Query 003087
Match_columns 849
No_of_seqs 376 out of 1104
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 12:50:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003087.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003087hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ynn_A Coatomer subunit beta'; 100.0 5.7E-32 1.9E-36 292.9 31.5 261 9-340 12-278 (304)
2 4gqb_B Methylosome protein 50; 100.0 4.2E-32 1.4E-36 300.7 30.4 244 11-322 83-333 (344)
3 3ow8_A WD repeat-containing pr 100.0 2.1E-31 7.3E-36 291.5 30.9 261 8-340 30-298 (321)
4 1nr0_A Actin interacting prote 100.0 2.1E-31 7.3E-36 317.0 32.8 292 9-340 17-375 (611)
5 3ow8_A WD repeat-containing pr 100.0 2.2E-31 7.5E-36 291.4 29.9 240 8-319 78-320 (321)
6 1got_B GT-beta; complex (GTP-b 100.0 6.9E-31 2.4E-35 289.0 33.1 260 9-340 54-320 (340)
7 3fm0_A Protein CIAO1; WDR39,SG 100.0 8.4E-31 2.9E-35 289.1 33.8 283 9-342 14-313 (345)
8 1vyh_C Platelet-activating fac 100.0 4.2E-31 1.4E-35 298.9 31.9 259 9-340 107-388 (410)
9 2pm7_B Protein transport prote 100.0 1.6E-30 5.5E-35 280.5 34.5 256 8-320 7-285 (297)
10 4g56_B MGC81050 protein; prote 100.0 2.6E-31 8.8E-36 295.2 28.8 246 10-322 94-345 (357)
11 4gqb_B Methylosome protein 50; 100.0 3.5E-31 1.2E-35 293.3 27.6 265 11-341 31-308 (344)
12 3fm0_A Protein CIAO1; WDR39,SG 100.0 3E-30 1E-34 284.7 33.7 270 9-325 60-340 (345)
13 3frx_A Guanine nucleotide-bind 100.0 1.7E-30 5.8E-35 283.5 29.8 253 9-321 64-318 (319)
14 2hes_X YDR267CP; beta-propelle 100.0 6.3E-30 2.2E-34 280.3 33.5 275 8-340 12-303 (330)
15 4g56_B MGC81050 protein; prote 100.0 1.4E-30 4.9E-35 289.2 28.4 265 9-341 41-320 (357)
16 1vyh_C Platelet-activating fac 100.0 2.8E-30 9.7E-35 292.1 29.2 238 9-318 149-409 (410)
17 1erj_A Transcriptional repress 100.0 5.7E-30 2E-34 287.6 31.3 279 9-341 63-361 (393)
18 4h5i_A Guanine nucleotide-exch 100.0 2.3E-30 7.9E-35 288.6 27.6 206 56-321 135-344 (365)
19 2pbi_B Guanine nucleotide-bind 100.0 8.2E-30 2.8E-34 282.6 31.6 243 9-317 63-354 (354)
20 1got_B GT-beta; complex (GTP-b 100.0 8E-30 2.7E-34 280.5 30.2 240 9-317 96-340 (340)
21 3iz6_a 40S ribosomal protein R 100.0 2.9E-30 9.8E-35 288.7 26.6 274 9-340 65-352 (380)
22 3bg1_A Protein SEC13 homolog; 100.0 5.3E-30 1.8E-34 279.2 26.7 256 7-320 10-293 (316)
23 2xzm_R RACK1; ribosome, transl 100.0 2.6E-29 8.9E-34 276.5 32.3 247 8-323 19-288 (343)
24 1nr0_A Actin interacting prote 100.0 1.7E-29 5.9E-34 300.6 33.3 265 9-322 58-399 (611)
25 1erj_A Transcriptional repress 100.0 1.4E-29 4.7E-34 284.5 30.6 256 12-321 125-390 (393)
26 2xzm_R RACK1; ribosome, transl 100.0 5.4E-29 1.8E-33 274.0 34.6 263 9-322 75-342 (343)
27 2ymu_A WD-40 repeat protein; u 100.0 1.7E-29 5.8E-34 295.6 30.3 233 9-317 343-577 (577)
28 3frx_A Guanine nucleotide-bind 100.0 8.1E-29 2.8E-33 270.2 33.0 244 8-323 15-270 (319)
29 2hes_X YDR267CP; beta-propelle 100.0 4.4E-29 1.5E-33 273.6 29.4 255 9-320 57-328 (330)
30 4ery_A WD repeat-containing pr 100.0 1.4E-28 4.9E-33 265.6 32.6 264 8-341 21-288 (312)
31 4e54_B DNA damage-binding prot 100.0 3E-29 1E-33 285.4 27.3 206 11-263 120-330 (435)
32 2ynn_A Coatomer subunit beta'; 100.0 2E-28 6.9E-33 265.0 31.1 241 10-320 55-302 (304)
33 2ymu_A WD-40 repeat protein; u 100.0 3.4E-28 1.2E-32 284.7 31.9 254 9-340 302-557 (577)
34 3iz6_a 40S ribosomal protein R 100.0 1.4E-28 4.8E-33 275.0 24.6 260 9-323 107-378 (380)
35 3jrp_A Fusion protein of prote 100.0 1.4E-27 4.7E-32 262.1 31.7 255 9-322 10-289 (379)
36 3dwl_C Actin-related protein 2 100.0 2.4E-28 8.3E-33 270.1 23.0 256 11-320 12-281 (377)
37 3f3f_A Nucleoporin SEH1; struc 100.0 4.8E-27 1.6E-31 252.9 32.5 276 8-323 9-340 (351)
38 1k8k_C P40, ARP2/3 complex 41 100.0 3.5E-27 1.2E-31 258.9 31.0 260 9-320 7-274 (372)
39 3dm0_A Maltose-binding peripla 100.0 1.6E-27 5.3E-32 287.6 30.8 262 9-320 429-693 (694)
40 4aow_A Guanine nucleotide-bind 100.0 1.3E-26 4.5E-31 251.1 34.0 263 9-340 37-314 (340)
41 3dm0_A Maltose-binding peripla 100.0 3E-27 1E-31 285.2 31.7 249 8-324 380-636 (694)
42 1gxr_A ESG1, transducin-like e 100.0 8.8E-27 3E-31 251.4 30.8 246 9-325 50-301 (337)
43 3ei3_B DNA damage-binding prot 100.0 2.2E-27 7.5E-32 263.6 26.1 266 9-324 72-343 (383)
44 2j04_B YDR362CP, TAU91; beta p 100.0 6.1E-28 2.1E-32 282.4 22.4 242 11-321 134-429 (524)
45 2j04_A TAU60, YPL007P, hypothe 100.0 1.1E-27 3.8E-32 276.9 23.9 248 7-319 10-296 (588)
46 1gxr_A ESG1, transducin-like e 100.0 2.5E-26 8.7E-31 247.8 32.3 238 9-319 96-336 (337)
47 4h5i_A Guanine nucleotide-exch 100.0 2.1E-27 7.2E-32 264.6 24.4 204 11-261 134-344 (365)
48 3zwl_B Eukaryotic translation 100.0 1.6E-26 5.6E-31 252.1 29.9 247 9-322 31-348 (369)
49 2j04_B YDR362CP, TAU91; beta p 100.0 3.2E-27 1.1E-31 276.2 25.2 258 10-320 207-517 (524)
50 2pm9_A Protein WEB1, protein t 100.0 8E-27 2.7E-31 260.5 27.2 259 9-323 66-340 (416)
51 4ery_A WD repeat-containing pr 100.0 5.4E-26 1.8E-30 245.4 32.3 240 9-319 64-311 (312)
52 3k26_A Polycomb protein EED; W 100.0 9.9E-27 3.4E-31 254.0 26.5 273 7-320 66-366 (366)
53 4aow_A Guanine nucleotide-bind 100.0 4.6E-26 1.6E-30 246.8 31.3 252 10-322 86-339 (340)
54 1yfq_A Cell cycle arrest prote 100.0 4E-26 1.4E-30 247.8 30.7 271 8-339 9-301 (342)
55 4a11_B DNA excision repair pro 100.0 7.9E-26 2.7E-30 250.7 33.6 281 9-325 42-370 (408)
56 3vl1_A 26S proteasome regulato 100.0 1.2E-26 4.2E-31 260.0 27.3 256 11-323 57-325 (420)
57 3gre_A Serine/threonine-protei 99.9 5E-27 1.7E-31 265.5 22.7 269 9-324 62-363 (437)
58 3dw8_B Serine/threonine-protei 99.9 1.5E-26 5E-31 261.2 26.2 279 9-324 27-377 (447)
59 4ggc_A P55CDC, cell division c 99.9 9E-26 3.1E-30 242.1 31.0 248 14-321 29-316 (318)
60 1r5m_A SIR4-interacting protei 99.9 4.3E-26 1.5E-30 253.8 28.3 257 9-320 107-425 (425)
61 3vl1_A 26S proteasome regulato 99.9 5.4E-26 1.9E-30 254.7 29.0 254 11-322 98-367 (420)
62 3i2n_A WD repeat-containing pr 99.9 3.9E-26 1.3E-30 248.7 26.9 269 9-323 64-356 (357)
63 1r5m_A SIR4-interacting protei 99.9 3.9E-26 1.3E-30 254.2 25.9 255 11-324 46-323 (425)
64 3mkq_A Coatomer beta'-subunit; 99.9 6.9E-26 2.3E-30 276.3 30.4 246 9-324 12-263 (814)
65 3ei3_B DNA damage-binding prot 99.9 6.6E-26 2.2E-30 251.7 27.6 250 9-320 117-382 (383)
66 1k8k_C P40, ARP2/3 complex 41 99.9 5.7E-26 1.9E-30 249.3 26.5 276 9-325 51-366 (372)
67 4gga_A P55CDC, cell division c 99.9 1.2E-25 4.1E-30 254.2 29.8 248 14-322 109-397 (420)
68 3dwl_C Actin-related protein 2 99.9 5.2E-26 1.8E-30 251.4 26.0 273 9-318 54-377 (377)
69 2pm9_A Protein WEB1, protein t 99.9 2.5E-26 8.6E-31 256.4 23.3 262 8-324 10-298 (416)
70 3i2n_A WD repeat-containing pr 99.9 2.3E-25 7.7E-30 242.7 28.2 257 9-323 17-294 (357)
71 3jro_A Fusion protein of prote 99.9 1.2E-25 4.1E-30 274.3 28.1 256 8-322 7-287 (753)
72 3sfz_A APAF-1, apoptotic pepti 99.9 2.7E-25 9.1E-30 284.5 31.9 255 9-321 614-914 (1249)
73 3odt_A Protein DOA1; ubiquitin 99.9 4.4E-25 1.5E-29 235.9 28.2 241 9-325 58-301 (313)
74 3mmy_A MRNA export factor; mRN 99.9 2.8E-25 9.5E-30 242.3 26.1 264 9-318 38-344 (368)
75 3odt_A Protein DOA1; ubiquitin 99.9 8.3E-25 2.9E-29 233.7 29.0 238 8-324 16-259 (313)
76 2pm7_B Protein transport prote 99.9 6.2E-25 2.1E-29 236.7 27.7 211 53-322 8-240 (297)
77 2j04_A TAU60, YPL007P, hypothe 99.9 1E-25 3.5E-30 260.5 22.1 197 10-259 85-296 (588)
78 1sq9_A Antiviral protein SKI8; 99.9 5.6E-25 1.9E-29 244.3 27.3 269 8-324 14-326 (397)
79 2aq5_A Coronin-1A; WD40 repeat 99.9 3.7E-25 1.3E-29 248.1 25.9 250 9-322 80-344 (402)
80 1sq9_A Antiviral protein SKI8; 99.9 3.4E-25 1.2E-29 246.0 25.4 278 9-322 61-397 (397)
81 1pgu_A Actin interacting prote 99.9 8.1E-25 2.8E-29 256.8 29.6 275 9-340 17-347 (615)
82 2vdu_B TRNA (guanine-N(7)-)-me 99.9 1.1E-24 3.9E-29 248.5 29.6 266 11-321 5-342 (450)
83 3k26_A Polycomb protein EED; W 99.9 2E-24 6.7E-29 235.8 28.8 272 8-323 16-321 (366)
84 4aez_A CDC20, WD repeat-contai 99.9 1.4E-24 4.8E-29 243.8 27.8 243 10-325 134-385 (401)
85 2xyi_A Probable histone-bindin 99.9 1.3E-24 4.6E-29 246.8 26.7 261 11-322 129-412 (430)
86 2pbi_B Guanine nucleotide-bind 99.9 2.6E-24 8.9E-29 238.3 27.4 198 9-257 153-354 (354)
87 4aez_A CDC20, WD repeat-contai 99.9 5E-24 1.7E-28 239.2 29.3 236 13-322 96-338 (401)
88 4gq1_A NUP37; propeller, trans 99.9 3.5E-25 1.2E-29 248.8 19.8 261 13-320 92-389 (393)
89 3vu4_A KMHSV2; beta-propeller 99.9 6E-24 2E-28 235.5 27.6 246 9-322 18-273 (355)
90 3dw8_B Serine/threonine-protei 99.9 6.9E-24 2.4E-28 239.3 28.6 263 11-318 94-444 (447)
91 3sfz_A APAF-1, apoptotic pepti 99.9 9.9E-25 3.4E-29 279.2 24.4 249 11-324 962-1211(1249)
92 2aq5_A Coronin-1A; WD40 repeat 99.9 4.4E-24 1.5E-28 239.4 26.7 244 15-323 39-302 (402)
93 3bg1_A Protein SEC13 homolog; 99.9 1.9E-24 6.4E-29 235.3 22.4 207 53-320 12-247 (316)
94 1pgu_A Actin interacting prote 99.9 1.1E-23 3.8E-28 247.1 30.6 294 12-341 208-593 (615)
95 3v7d_B Cell division control p 99.9 2.6E-23 9.1E-28 236.8 32.1 259 8-340 160-441 (464)
96 3mkq_A Coatomer beta'-subunit; 99.9 1.4E-23 4.9E-28 255.8 30.4 244 9-323 54-305 (814)
97 3v7d_B Cell division control p 99.9 1.8E-23 6.2E-28 238.2 29.0 246 17-325 127-386 (464)
98 3lrv_A PRE-mRNA-splicing facto 99.9 3E-24 1E-28 235.8 21.1 240 16-323 42-295 (343)
99 4e54_B DNA damage-binding prot 99.9 3.2E-24 1.1E-28 243.8 21.9 207 54-323 119-330 (435)
100 2oaj_A Protein SNI1; WD40 repe 99.9 1.9E-24 6.6E-29 268.6 21.4 257 11-325 436-788 (902)
101 2oaj_A Protein SNI1; WD40 repe 99.9 1.5E-23 5.1E-28 260.6 29.2 274 9-319 16-311 (902)
102 3gre_A Serine/threonine-protei 99.9 1.3E-23 4.4E-28 237.5 24.7 273 9-317 110-437 (437)
103 2vdu_B TRNA (guanine-N(7)-)-me 99.9 6.7E-23 2.3E-27 233.8 30.7 258 11-321 103-392 (450)
104 2w18_A PALB2, fancn, partner a 99.9 1.1E-23 3.9E-28 230.0 20.3 210 10-258 111-355 (356)
105 1yfq_A Cell cycle arrest prote 99.9 2.7E-22 9.1E-27 217.6 27.9 240 9-312 55-315 (342)
106 3jrp_A Fusion protein of prote 99.9 2.8E-22 9.7E-27 219.7 28.1 211 53-322 10-242 (379)
107 3lrv_A PRE-mRNA-splicing facto 99.9 1.4E-22 5E-27 222.4 23.9 239 11-320 77-333 (343)
108 4a11_B DNA excision repair pro 99.9 1.2E-21 4E-26 217.0 29.7 224 9-262 98-367 (408)
109 2w18_A PALB2, fancn, partner a 99.9 2.5E-22 8.6E-27 219.4 22.7 258 13-318 42-355 (356)
110 3zwl_B Eukaryotic translation 99.9 8.2E-22 2.8E-26 214.9 26.9 219 53-324 31-253 (369)
111 1p22_A F-BOX/WD-repeat protein 99.9 8.4E-22 2.9E-26 223.5 27.4 232 11-322 134-367 (435)
112 4gga_A P55CDC, cell division c 99.9 6.5E-22 2.2E-26 223.6 26.1 208 9-261 146-396 (420)
113 4ggc_A P55CDC, cell division c 99.9 1.1E-21 3.8E-26 210.2 26.3 208 9-260 66-315 (318)
114 2ovr_B FBW7, F-BOX/WD repeat p 99.9 3.2E-21 1.1E-25 219.0 31.1 232 11-324 119-352 (445)
115 1l0q_A Surface layer protein; 99.9 2.5E-21 8.6E-26 214.8 28.2 238 11-323 32-278 (391)
116 4gq1_A NUP37; propeller, trans 99.9 2.4E-21 8.3E-26 217.5 26.4 283 12-324 17-352 (393)
117 2xyi_A Probable histone-bindin 99.9 3.1E-21 1E-25 219.1 27.3 212 53-321 127-354 (430)
118 1p22_A F-BOX/WD-repeat protein 99.9 1.2E-21 4.1E-26 222.2 23.8 242 9-324 172-418 (435)
119 3f3f_A Nucleoporin SEH1; struc 99.9 8.7E-21 3E-25 203.8 28.0 224 53-322 10-251 (351)
120 3vu4_A KMHSV2; beta-propeller 99.9 6.4E-21 2.2E-25 211.1 27.0 259 12-322 60-338 (355)
121 2ovr_B FBW7, F-BOX/WD repeat p 99.9 4.4E-20 1.5E-24 209.6 32.0 254 8-341 157-416 (445)
122 3bws_A Protein LP49; two-domai 99.9 1.4E-20 5E-25 211.7 27.0 235 10-320 169-432 (433)
123 3jro_A Fusion protein of prote 99.9 2.1E-20 7E-25 228.0 25.7 219 8-261 51-286 (753)
124 3mmy_A MRNA export factor; mRN 99.9 1.7E-20 6E-25 204.2 22.2 208 9-260 85-346 (368)
125 3bws_A Protein LP49; two-domai 99.9 2E-20 6.8E-25 210.5 21.8 249 11-324 123-394 (433)
126 2hqs_A Protein TOLB; TOLB, PAL 99.8 6.8E-19 2.3E-23 199.4 32.2 248 22-344 143-409 (415)
127 2hqs_A Protein TOLB; TOLB, PAL 99.8 5.5E-19 1.9E-23 200.2 28.6 217 11-301 179-408 (415)
128 1l0q_A Surface layer protein; 99.8 2.4E-19 8.4E-24 198.8 25.0 225 23-323 3-236 (391)
129 2ojh_A Uncharacterized protein 99.8 8.2E-19 2.8E-23 184.3 24.5 233 11-310 42-292 (297)
130 3hfq_A Uncharacterized protein 99.8 1.6E-18 5.6E-23 189.5 25.7 261 11-322 40-321 (347)
131 2ecf_A Dipeptidyl peptidase IV 99.8 2.8E-19 9.6E-24 216.2 19.4 263 10-319 36-366 (741)
132 3o4h_A Acylamino-acid-releasin 99.8 4.1E-19 1.4E-23 209.2 18.7 233 11-318 22-274 (582)
133 1ri6_A Putative isomerase YBHE 99.8 4.1E-18 1.4E-22 184.0 24.9 255 11-319 38-307 (343)
134 1xfd_A DIP, dipeptidyl aminope 99.8 1.4E-19 4.7E-24 218.1 13.9 228 11-263 17-292 (723)
135 1nir_A Nitrite reductase; hemo 99.8 9.2E-18 3.1E-22 197.1 26.7 251 13-324 181-462 (543)
136 1xfd_A DIP, dipeptidyl aminope 99.8 3.3E-18 1.1E-22 206.1 23.3 259 12-320 62-393 (723)
137 2ecf_A Dipeptidyl peptidase IV 99.8 4.1E-18 1.4E-22 206.0 22.3 252 12-320 110-413 (741)
138 2z3z_A Dipeptidyl aminopeptida 99.8 2.2E-17 7.5E-22 198.6 25.4 253 11-322 82-393 (706)
139 2z3z_A Dipeptidyl aminopeptida 99.8 2.2E-17 7.4E-22 198.7 24.4 246 11-322 121-437 (706)
140 3vgz_A Uncharacterized protein 99.8 3.2E-17 1.1E-21 178.3 23.5 247 11-324 41-307 (353)
141 3u4y_A Uncharacterized protein 99.8 2E-16 6.7E-21 171.1 28.9 253 11-322 41-306 (331)
142 1z68_A Fibroblast activation p 99.8 2.7E-18 9.3E-23 207.1 14.0 265 14-322 19-348 (719)
143 1pby_B Quinohemoprotein amine 99.8 2.2E-17 7.5E-22 177.9 19.6 248 12-324 35-314 (337)
144 1nir_A Nitrite reductase; hemo 99.7 1.1E-16 3.8E-21 187.8 27.0 243 17-320 144-402 (543)
145 3scy_A Hypothetical bacterial 99.7 6.5E-16 2.2E-20 169.9 30.5 262 11-322 50-341 (361)
146 2ojh_A Uncharacterized protein 99.7 2E-16 6.8E-21 166.0 24.4 223 30-322 21-260 (297)
147 4a5s_A Dipeptidyl peptidase 4 99.7 1E-17 3.5E-22 203.6 16.3 270 11-322 17-355 (740)
148 1jmx_B Amine dehydrogenase; ox 99.7 5.2E-17 1.8E-21 176.1 20.0 251 15-324 4-329 (349)
149 1jof_A Carboxy-CIS,CIS-muconat 99.7 7.1E-17 2.4E-21 178.9 20.7 261 12-321 41-342 (365)
150 2oit_A Nucleoporin 214KDA; NH2 99.7 4.2E-17 1.4E-21 186.1 18.8 213 55-321 37-279 (434)
151 1k32_A Tricorn protease; prote 99.7 7.1E-17 2.4E-21 203.7 22.6 235 12-321 246-503 (1045)
152 2oit_A Nucleoporin 214KDA; NH2 99.7 9.3E-17 3.2E-21 183.2 18.2 208 11-261 37-279 (434)
153 3hfq_A Uncharacterized protein 99.7 1.3E-15 4.5E-20 166.3 26.3 213 11-259 86-316 (347)
154 1ri6_A Putative isomerase YBHE 99.7 9E-16 3.1E-20 165.6 23.1 246 23-319 5-261 (343)
155 1z68_A Fibroblast activation p 99.7 6.5E-16 2.2E-20 186.3 22.7 252 13-320 62-391 (719)
156 3u4y_A Uncharacterized protein 99.7 1.6E-15 5.4E-20 164.0 23.3 242 16-323 3-255 (331)
157 3vgz_A Uncharacterized protein 99.7 2.5E-15 8.5E-20 163.3 25.0 230 11-310 89-334 (353)
158 1k32_A Tricorn protease; prote 99.7 5.7E-16 1.9E-20 195.5 21.2 203 12-260 297-502 (1045)
159 3fvz_A Peptidyl-glycine alpha- 99.6 5E-14 1.7E-18 153.9 25.0 259 9-321 22-323 (329)
160 1q7f_A NHL, brain tumor CG1071 99.6 2.7E-13 9.4E-18 143.8 29.5 247 7-321 26-281 (286)
161 3o4h_A Acylamino-acid-releasin 99.6 1.2E-14 4.2E-19 170.9 19.5 194 55-323 22-230 (582)
162 3pe7_A Oligogalacturonate lyas 99.6 9E-15 3.1E-19 161.7 16.2 253 16-322 41-331 (388)
163 3scy_A Hypothetical bacterial 99.6 4.4E-13 1.5E-17 147.3 28.9 208 12-259 101-336 (361)
164 3azo_A Aminopeptidase; POP fam 99.6 4.8E-14 1.6E-18 168.2 22.6 204 15-259 81-322 (662)
165 4a5s_A Dipeptidyl peptidase 4 99.6 2.8E-14 9.7E-19 173.3 18.9 161 55-257 17-199 (740)
166 3c5m_A Oligogalacturonate lyas 99.5 5.1E-14 1.8E-18 155.4 17.2 249 13-322 38-331 (396)
167 3azo_A Aminopeptidase; POP fam 99.5 2.5E-13 8.4E-18 162.0 24.1 257 10-319 23-322 (662)
168 1pby_B Quinohemoprotein amine 99.5 1.1E-13 3.8E-18 148.7 19.0 205 12-269 83-318 (337)
169 3pe7_A Oligogalacturonate lyas 99.5 1.3E-13 4.4E-18 152.4 19.1 255 13-320 83-382 (388)
170 1jof_A Carboxy-CIS,CIS-muconat 99.5 2.4E-13 8.1E-18 150.5 20.7 219 13-261 85-342 (365)
171 1jmx_B Amine dehydrogenase; ox 99.5 1.6E-13 5.3E-18 148.6 17.6 211 12-268 44-332 (349)
172 2gop_A Trilobed protease; beta 99.5 8.7E-13 3E-17 143.5 22.7 231 9-319 57-330 (347)
173 2gop_A Trilobed protease; beta 99.5 8.1E-13 2.8E-17 143.8 21.8 230 9-322 13-293 (347)
174 2oiz_A Aromatic amine dehydrog 99.5 4.1E-12 1.4E-16 141.0 23.2 253 15-324 54-340 (361)
175 2xdw_A Prolyl endopeptidase; a 99.4 8.8E-12 3E-16 150.6 27.4 245 12-322 126-416 (710)
176 3c5m_A Oligogalacturonate lyas 99.4 1E-12 3.5E-17 144.9 17.0 248 16-323 86-387 (396)
177 3e5z_A Putative gluconolactona 99.4 2.2E-11 7.6E-16 130.0 25.1 241 11-321 28-285 (296)
178 2dg1_A DRP35, lactonase; beta 99.4 3.2E-10 1.1E-14 122.6 30.9 243 11-311 45-301 (333)
179 1rwi_B Serine/threonine-protei 99.4 1.1E-10 3.8E-15 122.1 25.4 238 12-322 25-266 (270)
180 1q7f_A NHL, brain tumor CG1071 99.3 8.3E-11 2.8E-15 124.6 23.8 202 10-260 76-280 (286)
181 2bkl_A Prolyl endopeptidase; m 99.3 1.8E-11 6.1E-16 147.6 20.9 245 12-322 122-399 (695)
182 2xdw_A Prolyl endopeptidase; a 99.3 7.1E-11 2.4E-15 142.6 24.2 246 19-322 80-370 (710)
183 3fvz_A Peptidyl-glycine alpha- 99.3 2.2E-10 7.4E-15 124.9 25.2 215 11-261 91-323 (329)
184 2dg1_A DRP35, lactonase; beta 99.3 8.6E-11 3E-15 127.2 20.7 248 11-319 6-262 (333)
185 1yr2_A Prolyl oligopeptidase; 99.2 5E-10 1.7E-14 135.9 25.1 243 12-322 164-443 (741)
186 2bkl_A Prolyl endopeptidase; m 99.2 2.2E-10 7.6E-15 138.0 21.1 242 18-319 75-348 (695)
187 1yr2_A Prolyl oligopeptidase; 99.2 1E-09 3.4E-14 133.3 25.3 241 18-319 114-392 (741)
188 1pjx_A Dfpase, DIISOPROPYLFLUO 99.2 7.1E-09 2.4E-13 110.6 27.9 247 10-320 17-299 (314)
189 3e5z_A Putative gluconolactona 99.2 5.8E-10 2E-14 118.9 19.2 213 54-319 27-245 (296)
190 2oiz_A Aromatic amine dehydrog 99.2 6.3E-10 2.2E-14 123.3 19.4 233 12-303 109-360 (361)
191 2z2n_A Virginiamycin B lyase; 99.2 1.6E-08 5.5E-13 106.5 29.4 244 3-319 7-254 (299)
192 2mad_H Methylamine dehydrogena 99.1 1.2E-08 4.1E-13 113.7 27.2 250 15-324 70-354 (373)
193 2z2n_A Virginiamycin B lyase; 99.1 2.9E-08 1E-12 104.5 28.9 239 10-322 56-297 (299)
194 3dsm_A Uncharacterized protein 99.1 3E-09 1E-13 116.0 21.6 249 12-323 45-304 (328)
195 3no2_A Uncharacterized protein 99.1 4.6E-09 1.6E-13 112.0 21.9 229 20-311 3-233 (276)
196 1xip_A Nucleoporin NUP159; bet 99.1 1.4E-09 4.9E-14 121.5 17.1 182 11-247 38-231 (388)
197 1rwi_B Serine/threonine-protei 99.0 1E-08 3.5E-13 106.9 20.7 198 11-261 67-265 (270)
198 3hrp_A Uncharacterized protein 99.0 1.9E-08 6.3E-13 113.6 23.7 269 9-318 129-408 (409)
199 3iuj_A Prolyl endopeptidase; h 99.0 7.1E-09 2.4E-13 125.0 20.6 244 12-322 130-407 (693)
200 1qks_A Cytochrome CD1 nitrite 99.0 5.6E-08 1.9E-12 114.3 27.7 256 12-321 198-478 (567)
201 2qc5_A Streptogramin B lactona 99.0 2.9E-07 9.7E-12 96.9 29.0 243 4-319 13-259 (300)
202 3no2_A Uncharacterized protein 98.9 2.1E-08 7.1E-13 106.9 18.5 194 64-323 3-198 (276)
203 1qks_A Cytochrome CD1 nitrite 98.9 1.7E-07 5.7E-12 110.2 27.5 242 19-320 164-421 (567)
204 3g4e_A Regucalcin; six bladed 98.9 3.2E-07 1.1E-11 98.1 27.5 235 11-308 13-260 (297)
205 3dr2_A Exported gluconolactona 98.9 2.1E-07 7.1E-12 99.9 24.7 237 11-311 45-298 (305)
206 3sjl_D Methylamine dehydrogena 98.9 7.5E-08 2.6E-12 107.3 20.8 244 15-324 82-367 (386)
207 1pjx_A Dfpase, DIISOPROPYLFLUO 98.9 8.3E-08 2.8E-12 102.2 20.1 203 11-261 71-300 (314)
208 3c75_H MADH, methylamine dehyd 98.9 1E-07 3.5E-12 107.8 21.3 250 15-324 122-406 (426)
209 2qe8_A Uncharacterized protein 98.8 1.5E-07 5E-12 103.2 20.3 251 11-308 17-308 (343)
210 2qc5_A Streptogramin B lactona 98.8 1.4E-06 4.7E-11 91.6 27.2 238 7-318 58-298 (300)
211 2ghs_A AGR_C_1268P; regucalcin 98.8 2.7E-06 9.2E-11 92.4 28.4 231 12-308 50-290 (326)
212 1mda_H Methylamine dehydrogena 98.7 1.1E-07 3.7E-12 105.7 14.8 244 15-324 69-350 (368)
213 1xip_A Nucleoporin NUP159; bet 98.7 9.4E-08 3.2E-12 106.8 13.5 184 56-307 39-230 (388)
214 3iuj_A Prolyl endopeptidase; h 98.7 3.1E-07 1.1E-11 110.6 18.0 203 55-322 129-361 (693)
215 3dsm_A Uncharacterized protein 98.7 6.4E-07 2.2E-11 97.4 18.8 204 11-269 84-309 (328)
216 3g4e_A Regucalcin; six bladed 98.6 1.6E-06 5.3E-11 92.7 19.3 191 11-250 54-262 (297)
217 3hrp_A Uncharacterized protein 98.5 2.9E-06 9.9E-11 95.5 20.5 216 56-322 132-356 (409)
218 3dr2_A Exported gluconolactona 98.5 2E-06 6.7E-11 92.2 17.7 188 11-254 86-301 (305)
219 2mad_H Methylamine dehydrogena 98.5 9.3E-06 3.2E-10 90.2 23.0 215 13-263 127-353 (373)
220 2ghs_A AGR_C_1268P; regucalcin 98.4 1.1E-05 3.8E-10 87.5 20.4 188 11-250 90-292 (326)
221 3sjl_D Methylamine dehydrogena 98.4 1.7E-05 5.9E-10 88.3 20.5 217 12-269 138-371 (386)
222 2ece_A 462AA long hypothetical 98.3 7E-05 2.4E-09 84.3 24.5 216 19-259 90-351 (462)
223 2ece_A 462AA long hypothetical 98.3 5.5E-05 1.9E-09 85.2 21.8 213 13-248 140-399 (462)
224 2qe8_A Uncharacterized protein 98.2 2.4E-05 8.1E-10 85.4 17.7 206 9-253 65-314 (343)
225 2hz6_A Endoplasmic reticulum t 98.1 2E-06 7E-11 95.3 6.1 181 21-263 8-195 (369)
226 3c75_H MADH, methylamine dehyd 98.1 3.6E-05 1.2E-09 86.9 15.9 212 13-268 179-409 (426)
227 2hz6_A Endoplasmic reticulum t 98.0 1.6E-06 5.4E-11 96.2 1.4 183 65-324 8-196 (369)
228 2fp8_A Strictosidine synthase; 97.9 0.0012 4.1E-08 70.9 23.8 249 7-322 15-315 (322)
229 1fwx_A Nitrous oxide reductase 97.9 0.00012 4.1E-09 85.1 16.0 210 14-260 88-361 (595)
230 2xe4_A Oligopeptidase B; hydro 97.8 0.00043 1.5E-08 84.0 19.4 115 12-138 175-305 (751)
231 2p4o_A Hypothetical protein; p 97.8 0.0083 2.8E-07 63.9 27.4 206 11-260 32-242 (306)
232 1npe_A Nidogen, entactin; glyc 97.8 0.0033 1.1E-07 65.3 22.7 235 22-324 1-242 (267)
233 1npe_A Nidogen, entactin; glyc 97.7 0.0084 2.9E-07 62.2 25.3 196 12-262 37-240 (267)
234 2xe4_A Oligopeptidase B; hydro 97.7 0.001 3.5E-08 80.7 20.8 119 56-205 175-305 (751)
235 1yiq_A Quinohemoprotein alcoho 97.7 0.0013 4.3E-08 79.1 21.3 189 57-269 237-513 (689)
236 1mda_H Methylamine dehydrogena 97.7 0.00016 5.4E-09 80.1 11.9 84 164-269 267-354 (368)
237 1kb0_A Quinohemoprotein alcoho 97.6 0.00072 2.5E-08 81.0 17.4 190 57-269 245-515 (677)
238 2xbg_A YCF48-like protein; pho 97.6 0.013 4.4E-07 63.3 25.6 235 12-317 81-319 (327)
239 3qqz_A Putative uncharacterize 97.6 0.011 3.9E-07 61.7 23.2 210 8-253 24-246 (255)
240 1fwx_A Nitrous oxide reductase 97.4 0.0022 7.4E-08 74.6 16.3 215 12-263 135-434 (595)
241 2iwa_A Glutamine cyclotransfer 97.4 0.0075 2.6E-07 63.5 19.1 212 56-322 22-239 (266)
242 2xbg_A YCF48-like protein; pho 97.4 0.019 6.6E-07 61.9 22.9 198 11-257 122-319 (327)
243 1kb0_A Quinohemoprotein alcoho 97.3 0.0017 5.7E-08 77.8 15.4 72 234-325 397-512 (677)
244 1yiq_A Quinohemoprotein alcoho 97.3 0.0029 9.8E-08 76.0 16.7 55 250-324 454-509 (689)
245 3hxj_A Pyrrolo-quinoline quino 97.3 0.002 6.8E-08 68.4 13.4 225 12-322 61-285 (330)
246 2fp8_A Strictosidine synthase; 97.2 0.016 5.6E-07 61.8 19.8 210 11-260 80-313 (322)
247 2ism_A Putative oxidoreductase 97.2 0.03 1E-06 61.2 22.1 74 10-85 30-114 (352)
248 3a9g_A Putative uncharacterize 97.2 0.055 1.9E-06 59.2 23.9 75 10-86 28-115 (354)
249 3hxj_A Pyrrolo-quinoline quino 97.1 0.011 3.8E-07 62.5 17.6 218 21-320 107-324 (330)
250 2iwa_A Glutamine cyclotransfer 97.1 0.04 1.4E-06 57.9 20.6 209 12-260 22-237 (266)
251 4a2l_A BT_4663, two-component 97.1 0.21 7.1E-06 60.5 30.1 256 11-322 215-482 (795)
252 4a2l_A BT_4663, two-component 97.0 0.23 7.8E-06 60.1 30.1 251 11-322 357-616 (795)
253 3tc9_A Hypothetical hydrolase; 97.0 0.067 2.3E-06 60.2 23.1 264 9-319 135-429 (430)
254 2g8s_A Glucose/sorbosone dehyd 97.0 0.13 4.6E-06 56.0 24.9 75 10-84 17-106 (353)
255 4hw6_A Hypothetical protein, I 96.9 0.11 3.6E-06 58.6 23.7 266 9-319 137-432 (433)
256 3v9f_A Two-component system se 96.9 0.17 5.9E-06 61.0 26.9 248 11-322 363-613 (781)
257 3qqz_A Putative uncharacterize 96.8 0.2 6.9E-06 52.2 23.4 215 54-314 26-247 (255)
258 3v65_B Low-density lipoprotein 96.8 0.16 5.4E-06 56.1 23.4 234 16-322 82-320 (386)
259 1k3i_A Galactose oxidase precu 96.8 0.093 3.2E-06 62.2 22.8 73 14-86 189-275 (656)
260 3v9f_A Two-component system se 96.6 0.42 1.5E-05 57.6 27.7 249 11-322 313-570 (781)
261 3p5b_L Low density lipoprotein 96.6 0.44 1.5E-05 52.8 25.7 231 24-323 85-323 (400)
262 1ijq_A LDL receptor, low-densi 96.6 0.54 1.9E-05 50.1 25.6 229 24-322 3-240 (316)
263 3v64_C Agrin; beta propeller, 96.6 0.65 2.2E-05 50.3 26.5 236 15-322 38-277 (349)
264 3q7m_A Lipoprotein YFGL, BAMB; 96.5 0.19 6.6E-06 54.4 21.2 62 241-324 239-300 (376)
265 3kya_A Putative phosphatase; s 96.4 0.54 1.8E-05 53.7 24.6 281 10-324 138-479 (496)
266 3q7m_A Lipoprotein YFGL, BAMB; 96.3 0.28 9.5E-06 53.1 21.6 187 66-317 188-375 (376)
267 2p4o_A Hypothetical protein; p 96.2 0.31 1.1E-05 51.4 20.6 192 11-251 72-279 (306)
268 2p9w_A MAL S 1 allergenic prot 96.2 0.1 3.5E-06 56.4 16.3 179 58-260 16-215 (334)
269 3pbp_A Nucleoporin NUP82; beta 96.1 0.33 1.1E-05 54.0 20.3 154 16-179 26-198 (452)
270 3v64_C Agrin; beta propeller, 96.1 0.8 2.7E-05 49.6 23.3 199 11-261 73-276 (349)
271 3nol_A Glutamine cyclotransfer 96.0 0.04 1.4E-06 57.6 12.0 147 15-179 89-243 (262)
272 3sov_A LRP-6, low-density lipo 96.0 0.8 2.7E-05 49.0 22.5 229 25-322 7-240 (318)
273 3sre_A PON1, serum paraoxonase 95.9 1.8 6.2E-05 47.2 25.1 193 12-250 51-287 (355)
274 3v65_B Low-density lipoprotein 95.9 0.46 1.6E-05 52.3 20.7 199 11-261 116-319 (386)
275 3nol_A Glutamine cyclotransfer 95.9 0.54 1.9E-05 49.0 19.6 195 11-248 43-243 (262)
276 1kv9_A Type II quinohemoprotei 95.8 0.36 1.2E-05 57.4 20.6 187 57-269 232-496 (668)
277 3das_A Putative oxidoreductase 95.7 0.28 9.6E-06 53.5 17.6 171 55-247 32-219 (347)
278 3nok_A Glutaminyl cyclase; bet 95.5 0.054 1.9E-06 56.7 10.4 148 17-179 100-253 (268)
279 3pbp_A Nucleoporin NUP82; beta 95.4 0.17 5.8E-06 56.4 14.5 101 12-112 67-192 (452)
280 1kv9_A Type II quinohemoprotei 95.3 0.17 5.7E-06 60.3 15.2 74 249-341 436-520 (668)
281 2ad6_A Methanol dehydrogenase 95.3 0.61 2.1E-05 54.3 19.6 36 233-269 467-502 (571)
282 1ijq_A LDL receptor, low-densi 95.2 2.2 7.4E-05 45.3 22.5 205 11-261 30-239 (316)
283 2ism_A Putative oxidoreductase 95.2 1.8 6.3E-05 46.8 22.1 113 56-180 32-154 (352)
284 2p9w_A MAL S 1 allergenic prot 95.1 1.3 4.4E-05 47.7 19.9 152 12-181 14-205 (334)
285 3p5b_L Low density lipoprotein 95.1 3.2 0.00011 45.8 24.1 205 11-261 112-321 (400)
286 3nok_A Glutaminyl cyclase; bet 95.1 1.3 4.4E-05 46.2 19.3 196 11-248 55-253 (268)
287 2ad6_A Methanol dehydrogenase 95.0 0.51 1.8E-05 54.9 17.8 89 233-340 389-525 (571)
288 3mbr_X Glutamine cyclotransfer 94.9 0.29 9.8E-06 50.6 13.6 151 14-179 66-222 (243)
289 3a9g_A Putative uncharacterize 94.8 0.44 1.5E-05 51.9 15.8 115 56-180 30-154 (354)
290 3tc9_A Hypothetical hydrolase; 94.8 0.42 1.5E-05 53.5 16.1 155 58-260 140-301 (430)
291 3m0c_C LDL receptor, low-densi 94.8 2.6 9E-05 51.0 24.0 230 24-322 397-634 (791)
292 3sre_A PON1, serum paraoxonase 94.7 1.1 3.6E-05 49.1 18.4 176 57-260 52-252 (355)
293 4hw6_A Hypothetical protein, I 94.6 1.9 6.5E-05 48.2 20.8 114 11-136 182-303 (433)
294 3das_A Putative oxidoreductase 94.6 0.63 2.1E-05 50.7 15.9 76 10-85 31-116 (347)
295 1tl2_A L10, protein (tachylect 94.5 0.29 1E-05 49.7 12.2 146 11-178 41-199 (236)
296 1n7d_A LDL receptor, low-densi 94.4 0.16 5.4E-06 60.9 11.8 203 55-322 406-616 (699)
297 4a0p_A LRP6, LRP-6, low-densit 94.3 5.5 0.00019 46.8 24.6 227 24-322 8-239 (628)
298 1cru_A Protein (soluble quinop 94.2 1 3.4E-05 50.9 17.2 117 56-181 28-164 (454)
299 3mbr_X Glutamine cyclotransfer 94.1 3.8 0.00013 42.1 20.0 197 11-248 21-222 (243)
300 1tl2_A L10, protein (tachylect 94.0 0.64 2.2E-05 47.2 13.3 106 55-178 41-152 (236)
301 3sov_A LRP-6, low-density lipo 93.6 8.9 0.0003 40.7 22.7 201 11-261 35-239 (318)
302 2g8s_A Glucose/sorbosone dehyd 93.5 0.93 3.2E-05 49.2 14.9 54 56-110 19-76 (353)
303 1cru_A Protein (soluble quinop 93.4 1.2 4.1E-05 50.3 16.0 64 10-73 26-99 (454)
304 1flg_A Protein (quinoprotein e 93.3 1.1 3.7E-05 52.3 16.0 30 239-269 495-524 (582)
305 1w6s_A Methanol dehydrogenase 93.2 2.3 8E-05 49.7 18.6 42 300-341 483-535 (599)
306 1k3i_A Galactose oxidase precu 93.1 1.3 4.4E-05 52.3 16.3 69 12-86 244-324 (656)
307 3kya_A Putative phosphatase; s 92.9 1.3 4.3E-05 50.6 15.1 173 57-260 141-341 (496)
308 1n7d_A LDL receptor, low-densi 92.8 0.53 1.8E-05 56.3 12.5 205 11-261 406-615 (699)
309 3ei3_A DNA damage-binding prot 92.0 8.2 0.00028 48.7 22.4 138 126-320 862-999 (1158)
310 3m0c_C LDL receptor, low-densi 92.0 13 0.00043 45.0 23.3 149 11-180 424-577 (791)
311 1w6s_A Methanol dehydrogenase 90.0 9.7 0.00033 44.4 19.0 31 238-269 481-511 (599)
312 3s25_A Hypothetical 7-bladed b 89.9 4.2 0.00014 43.1 14.5 81 6-94 48-147 (302)
313 3s94_A LRP-6, low-density lipo 89.7 23 0.00079 41.3 22.1 148 10-180 39-190 (619)
314 3amr_A 3-phytase; beta-propell 88.6 30 0.001 37.4 20.2 160 65-259 39-207 (355)
315 3amr_A 3-phytase; beta-propell 87.9 33 0.0011 37.1 20.8 195 24-259 43-262 (355)
316 3s94_A LRP-6, low-density lipo 87.2 51 0.0017 38.4 24.7 189 24-261 319-511 (619)
317 4a0p_A LRP6, LRP-6, low-densit 86.3 56 0.0019 38.1 24.9 198 10-261 36-238 (628)
318 1flg_A Protein (quinoprotein e 86.1 3.5 0.00012 48.0 11.8 80 75-177 465-545 (582)
319 2wg3_C Hedgehog-interacting pr 81.8 9.8 0.00033 42.9 12.8 30 57-86 16-46 (463)
320 3k8p_D Protein transport prote 79.8 4.4 0.00015 47.2 8.9 203 529-743 5-224 (709)
321 1xi4_A Clathrin heavy chain; a 79.0 1.2E+02 0.0042 38.9 21.9 233 59-338 70-306 (1630)
322 3s25_A Hypothetical 7-bladed b 78.0 45 0.0015 35.0 15.8 67 18-92 21-104 (302)
323 4a9v_A PHOX; hydrolase, beta-p 58.2 40 0.0014 38.9 10.6 67 7-73 472-549 (592)
324 4gq2_M Nucleoporin NUP120; bet 52.8 23 0.00079 43.6 8.1 34 230-263 236-269 (950)
325 3zwu_A Alkaline phosphatase PH 45.7 87 0.003 36.3 10.9 62 10-72 475-548 (592)
326 4gq2_M Nucleoporin NUP120; bet 38.1 73 0.0025 39.2 9.3 36 55-90 236-272 (950)
327 2wg3_C Hedgehog-interacting pr 38.0 4.5E+02 0.015 29.0 28.5 64 10-73 13-91 (463)
328 3ei3_A DNA damage-binding prot 37.0 7.1E+02 0.024 31.1 23.7 33 230-262 554-593 (1158)
329 3ott_A Two-component system se 34.6 6E+02 0.021 29.5 21.1 195 11-255 419-622 (758)
330 1bpo_A Protein (clathrin); cla 31.6 5.9E+02 0.02 28.4 32.4 225 59-337 70-305 (494)
331 3f7f_A Nucleoporin NUP120; nuc 30.8 98 0.0034 36.6 8.2 31 238-269 228-258 (729)
332 3sbq_A Nitrous-oxide reductase 30.3 1.1E+02 0.0036 35.4 8.0 74 11-84 323-407 (638)
333 4fhn_B Nucleoporin NUP120; pro 23.2 45 0.0015 41.9 3.8 37 230-267 238-274 (1139)
334 2xvc_A ESCRT-III, SSO0910; cel 23.1 54 0.0019 25.5 2.7 37 388-424 10-46 (59)
335 1xi4_A Clathrin heavy chain; a 21.9 1.4E+03 0.047 29.5 20.2 220 6-263 60-292 (1630)
336 2be1_A Serine/threonine-protei 21.7 3.3E+02 0.011 28.9 9.8 29 240-269 110-138 (339)
337 4hvt_A Ritya.17583.B, post-pro 20.3 1.1E+03 0.036 27.6 21.6 31 291-321 350-382 (711)
338 3mkq_B Coatomer subunit alpha; 20.2 59 0.002 31.4 3.1 31 386-416 101-131 (177)
No 1
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=5.7e-32 Score=292.89 Aligned_cols=261 Identities=11% Similarity=0.127 Sum_probs=198.0
Q ss_pred cccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecC-Cc
Q 003087 9 KTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKAN-GE 86 (849)
Q Consensus 9 ~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~-g~ 86 (849)
+.+.|.+|+|||||++||+|+ |++|+||+...+ .....+.. +...|.+++|+|||++||+|+.|++|++||+. |+
T Consensus 12 h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~--~~~~~~~~-~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~ 88 (304)
T 2ynn_A 12 RSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQ--VEVRSIQV-TETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE 88 (304)
T ss_dssp ECSCEEEEEECSSSSEEEEEETTSEEEEEETTTT--EEEEEEEC-CSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCC
T ss_pred CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC--ceeEEeec-cCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence 457899999999999999998 689999997642 33333332 35689999999999999999999999999996 66
Q ss_pred cceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEE
Q 003087 87 EITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICT 166 (849)
Q Consensus 87 ~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~sv 166 (849)
.+..+..|. ..|.+++|+|++. .+++++.||+|++||+.++.... ..+. +|...|.++
T Consensus 89 ~~~~~~~h~----~~v~~~~~~~~~~-------~l~sgs~D~~v~lWd~~~~~~~~----------~~~~-~h~~~v~~v 146 (304)
T 2ynn_A 89 KVVDFEAHP----DYIRSIAVHPTKP-------YVLSGSDDLTVKLWNWENNWALE----------QTFE-GHEHFVMCV 146 (304)
T ss_dssp EEEEEECCS----SCEEEEEECSSSS-------EEEEEETTSCEEEEEGGGTTEEE----------EEEC-CCCSCEEEE
T ss_pred EEEEEeCCC----CcEEEEEEcCCCC-------EEEEECCCCeEEEEECCCCcchh----------hhhc-ccCCcEEEE
Confidence 666665443 5799999998654 36677999999999998653211 1233 446679999
Q ss_pred EEcC-CCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEcc--CCCE
Q 003087 167 DYHP-ELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISP--QGKF 243 (849)
Q Consensus 167 afsP-dg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSP--DG~~ 243 (849)
+|+| ++.+||+|+.|++ |++|++........+ ..+ |...|..++|+| |+++
T Consensus 147 ~~~p~~~~~l~sgs~D~~-------------v~iwd~~~~~~~~~~-----------~~~--~~~~v~~~~~~~~~~~~~ 200 (304)
T 2ynn_A 147 AFNPKDPSTFASGCLDRT-------------VKVWSLGQSTPNFTL-----------TTG--QERGVNYVDYYPLPDKPY 200 (304)
T ss_dssp EECTTCTTEEEEEETTSE-------------EEEEETTCSSCSEEE-----------ECC--CTTCEEEEEECCSTTCCE
T ss_pred EECCCCCCEEEEEeCCCe-------------EEEEECCCCCcccee-----------ccC--CcCcEEEEEEEEcCCCCE
Confidence 9999 6899999999973 899998654211111 122 556888999987 8899
Q ss_pred EEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EEEEEeCCcEEEEEecCCc
Q 003087 244 VATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LILARKSSIITMIDVLSGL 322 (849)
Q Consensus 244 LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~a~~dgti~lwdl~~~~ 322 (849)
|||++.||+|+|||+.++++ +..+. .|...|..++|+|++. +++++.||+|+|||+.+++
T Consensus 201 l~s~s~D~~i~iWd~~~~~~-~~~~~------------------~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~ 261 (304)
T 2ynn_A 201 MITASDDLTIKIWDYQTKSC-VATLE------------------GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK 261 (304)
T ss_dssp EEEEETTSEEEEEETTTTEE-EEEEE------------------CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCC
T ss_pred EEEEcCCCeEEEEeCCCCcc-ceeeC------------------CCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence 99999999999999998754 33332 3556799999999975 7889999999999999887
Q ss_pred cccccCCCCCCeEEEEEe
Q 003087 323 KVKETDPKLRGHVFLLES 340 (849)
Q Consensus 323 ~l~~~~~~~~g~~~~Le~ 340 (849)
.+.. ...+.+.+..+..
T Consensus 262 ~~~~-~~~~~~~~~~~~~ 278 (304)
T 2ynn_A 262 VEKT-LNVGLERSWCIAT 278 (304)
T ss_dssp EEEE-ECCSSSSEEEEEE
T ss_pred eeee-ccCCCccEEEEEE
Confidence 4331 2234455555553
No 2
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=4.2e-32 Score=300.70 Aligned_cols=244 Identities=11% Similarity=0.035 Sum_probs=181.3
Q ss_pred cceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeee-cCCCCEEEEEECCCCCEEEEEeCCCcEEEEecC-Ccc
Q 003087 11 KKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNC-TGLGASIYGAWSESHDVLGIVDDTHTVYFFKAN-GEE 87 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~-~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~-g~~ 87 (849)
..|.+|+||||++ |++|+ |++|+||+...+.......... .|...|++|+|||||++||+|+.||+|+|||+. |+.
T Consensus 83 ~~v~~~~~s~d~~-l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~ 161 (344)
T 4gqb_B 83 AGVADLTWVGERG-ILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVV 161 (344)
T ss_dssp SCEEEEEEETTTE-EEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE
T ss_pred CCEEEEEEeCCCe-EEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcE
Confidence 4699999999975 55565 7899999987542222222222 346789999999999999999999999999997 666
Q ss_pred ceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEE
Q 003087 88 ITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTD 167 (849)
Q Consensus 88 ~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~sva 167 (849)
+..+.+|. ..|.+++|++++.. .|++++.||+|++||+.+++....+. .. .+...|.+++
T Consensus 162 ~~~~~~h~----~~V~~~~~~~~~~~------~l~s~s~D~~v~iwd~~~~~~~~~~~---------~~-~~~~~~~~~~ 221 (344)
T 4gqb_B 162 LSSYRAHA----AQVTCVAASPHKDS------VFLSCSEDNRILLWDTRCPKPASQIG---------CS-APGYLPTSLA 221 (344)
T ss_dssp EEEECCCS----SCEEEEEECSSCTT------EEEEEETTSCEEEEETTSSSCEEECC--------------CCCEEEEE
T ss_pred EEEEcCcC----CceEEEEecCCCCC------ceeeeccccccccccccccceeeeee---------cc-eeeccceeee
Confidence 66665443 57999999885431 25667999999999998776533221 11 2233589999
Q ss_pred EcCC-CceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCC-CEEE
Q 003087 168 YHPE-LSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQG-KFVA 245 (849)
Q Consensus 168 fsPd-g~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG-~~LA 245 (849)
|+|+ +++||+|+.|+ +|++||+.++.. +. .+.+ |...|.+|+||||| ++||
T Consensus 222 ~~p~~~~~l~sg~~dg-------------~v~~wd~~~~~~---~~---------~~~~--h~~~v~~v~fsp~g~~~la 274 (344)
T 4gqb_B 222 WHPQQSEVFVFGDENG-------------TVSLVDTKSTSC---VL---------SSAV--HSQCVTGLVFSPHSVPFLA 274 (344)
T ss_dssp ECSSCTTEEEEEETTS-------------EEEEEESCC--C---CE---------EEEC--CSSCEEEEEECSSSSCCEE
T ss_pred ecCCCCcceEEeccCC-------------cEEEEECCCCcE---EE---------EEcC--CCCCEEEEEEccCCCeEEE
Confidence 9995 56788888886 389999876421 11 2234 88899999999998 5899
Q ss_pred EEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE--EEEEEeCCcEEEEEecCCc
Q 003087 246 TSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI--LILARKSSIITMIDVLSGL 322 (849)
Q Consensus 246 s~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~--la~a~~dgti~lwdl~~~~ 322 (849)
|++.||+|+|||+.++++ ..+ .+|...|.+++|+||+. +++++.||+|++|++++..
T Consensus 275 sgs~D~~i~vwd~~~~~~--~~~------------------~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 275 SLSEDCSLAVLDSSLSEL--FRS------------------QAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp EEETTSCEEEECTTCCEE--EEE------------------CCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred EEeCCCeEEEEECCCCcE--EEE------------------cCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence 999999999999987643 122 14667899999999874 5688999999999998754
No 3
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.1e-31 Score=291.49 Aligned_cols=261 Identities=12% Similarity=0.143 Sum_probs=196.7
Q ss_pred ccccceEEEEEcCC----CCeEEEEe-CCeEEEEecCCCCCcceeeeeec-CCCCEEEEEECCCCCEEEEEeCCCcEEEE
Q 003087 8 RKTKKQVSLFISPR----GERVAVAA-VNQVTILQKDDDYQEPCGIFNCT-GLGASIYGAWSESHDVLGIVDDTHTVYFF 81 (849)
Q Consensus 8 ~~~~~v~slafSPd----G~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~-~~~~v~~vafSPDG~~LAs~~~dgtIrlW 81 (849)
.+.+.|++|+|+|+ |++||+|+ |++|+||+..+. .....+... +...|.+++|+|++.+||+|+.||+|+||
T Consensus 30 ~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~--~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lW 107 (321)
T 3ow8_A 30 AHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDE--RLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLW 107 (321)
T ss_dssp SSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETT--EEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEE
T ss_pred cCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCC--CeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEE
Confidence 46689999999985 67999998 789999997643 111122222 36789999999999999999999999999
Q ss_pred ecC-CccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccC
Q 003087 82 KAN-GEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFP 160 (849)
Q Consensus 82 d~~-g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~ 160 (849)
|+. |+.+..+..+. ..+.+++|+|++. .+++++.||+|++|++.++.... ++. .+.
T Consensus 108 d~~~~~~~~~~~~~~----~~~~~~~~spdg~-------~l~~g~~dg~v~i~~~~~~~~~~-----------~~~-~~~ 164 (321)
T 3ow8_A 108 DLENGKQIKSIDAGP----VDAWTLAFSPDSQ-------YLATGTHVGKVNIFGVESGKKEY-----------SLD-TRG 164 (321)
T ss_dssp ETTTTEEEEEEECCT----TCCCCEEECTTSS-------EEEEECTTSEEEEEETTTCSEEE-----------EEE-CSS
T ss_pred ECCCCCEEEEEeCCC----ccEEEEEECCCCC-------EEEEEcCCCcEEEEEcCCCceeE-----------Eec-CCC
Confidence 996 66665554433 3577899998764 36667899999999998765432 222 234
Q ss_pred CceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccC
Q 003087 161 QNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQ 240 (849)
Q Consensus 161 ~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPD 240 (849)
..|.+++|+|||++||+++.|++ |++|++.++. .+ ....+ |...|.+++||||
T Consensus 165 ~~v~~~~~spdg~~lasg~~dg~-------------i~iwd~~~~~---~~---------~~~~~--h~~~v~~l~~spd 217 (321)
T 3ow8_A 165 KFILSIAYSPDGKYLASGAIDGI-------------INIFDIATGK---LL---------HTLEG--HAMPIRSLTFSPD 217 (321)
T ss_dssp SCEEEEEECTTSSEEEEEETTSC-------------EEEEETTTTE---EE---------EEECC--CSSCCCEEEECTT
T ss_pred ceEEEEEECCCCCEEEEEcCCCe-------------EEEEECCCCc---EE---------EEEcc--cCCceeEEEEcCC
Confidence 56999999999999999999873 8999987642 11 12234 7889999999999
Q ss_pred CCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EEEEEeCCcEEEEEec
Q 003087 241 GKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LILARKSSIITMIDVL 319 (849)
Q Consensus 241 G~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~a~~dgti~lwdl~ 319 (849)
|++||+++.||+|+|||+.+... +..+. .|...|.+++|+||+. +++++.||+|+|||+.
T Consensus 218 ~~~l~s~s~dg~i~iwd~~~~~~-~~~~~------------------~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~ 278 (321)
T 3ow8_A 218 SQLLVTASDDGYIKIYDVQHANL-AGTLS------------------GHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVG 278 (321)
T ss_dssp SCEEEEECTTSCEEEEETTTCCE-EEEEC------------------CCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred CCEEEEEcCCCeEEEEECCCcce-eEEEc------------------CCCCceEEEEECCCCCEEEEEeCCCcEEEEeCC
Confidence 99999999999999999987643 22322 3556799999999985 7889999999999999
Q ss_pred CCccccccCCCCCCeEEEEEe
Q 003087 320 SGLKVKETDPKLRGHVFLLES 340 (849)
Q Consensus 320 ~~~~l~~~~~~~~g~~~~Le~ 340 (849)
+++.+.. -..|.+.+..+..
T Consensus 279 ~~~~~~~-~~~h~~~v~~v~~ 298 (321)
T 3ow8_A 279 TRTCVHT-FFDHQDQVWGVKY 298 (321)
T ss_dssp TTEEEEE-ECCCSSCEEEEEE
T ss_pred CCEEEEE-EcCCCCcEEEEEE
Confidence 8875432 1235556665555
No 4
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2.1e-31 Score=317.04 Aligned_cols=292 Identities=15% Similarity=0.090 Sum_probs=200.8
Q ss_pred cccceEEEEEcCCCCeEEEEeCCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecC-Ccc
Q 003087 9 KTKKQVSLFISPRGERVAVAAVNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKAN-GEE 87 (849)
Q Consensus 9 ~~~~v~slafSPdG~~LAsas~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~-g~~ 87 (849)
.|+.+.+|+|||||++||++++++|+||+..+. .....+.. |...|++++|||||++||+|+.||+|+|||+. ++.
T Consensus 17 ~~g~~~~~~~spdg~~l~~~~~~~v~l~~~~~~--~~~~~~~~-h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~ 93 (611)
T 1nr0_A 17 ARGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSL--TDTEIYTE-HSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTH 93 (611)
T ss_dssp CTTCCCCCEECTTSSEEEEEETTEEEEEETTCS--SCCEEECC-CSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTC
T ss_pred ccCceeEEeeCCCCCEEEeCCCCEEEEecCCCc--ccCeEecC-CCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcc
Confidence 568899999999999999999999999997642 23333432 36789999999999999999999999999985 332
Q ss_pred --ceecccccccccccEEEEEecCCccccc------------------------------------ccc--eeEEEEeCC
Q 003087 88 --ITRFTNKHLKVSLPIIGLIAQDETDVQR------------------------------------SCL--CSFTVFTSD 127 (849)
Q Consensus 88 --~~~l~~~~~~~~~~V~~l~fs~~~~~~~------------------------------------s~~--~~~~~~s~D 127 (849)
...+..+ ...|.+|+|+|++...+ +.+ ..+++++.|
T Consensus 94 ~~~~~~~~~----~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D 169 (611)
T 1nr0_A 94 ILKTTIPVF----SGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDD 169 (611)
T ss_dssp CEEEEEECS----SSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETT
T ss_pred eeeEeeccc----CCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCC
Confidence 2233222 35688888887543111 011 147888999
Q ss_pred CcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcC
Q 003087 128 GFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLE 207 (849)
Q Consensus 128 g~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~ 207 (849)
|+|++|+..+++... ++. +|...|++++|||||++||++|.|++ |++|++..+..
T Consensus 170 ~~v~lwd~~~~~~~~-----------~l~-~H~~~V~~v~fspdg~~las~s~D~~-------------i~lwd~~~g~~ 224 (611)
T 1nr0_A 170 NTVAIFEGPPFKFKS-----------TFG-EHTKFVHSVRYNPDGSLFASTGGDGT-------------IVLYNGVDGTK 224 (611)
T ss_dssp SCEEEEETTTBEEEE-----------EEC-CCSSCEEEEEECTTSSEEEEEETTSC-------------EEEEETTTCCE
T ss_pred CeEEEEECCCCeEee-----------eec-cccCceEEEEECCCCCEEEEEECCCc-------------EEEEECCCCcE
Confidence 999999976543322 344 45668999999999999999999974 89999765421
Q ss_pred cccceeccccceeeccCCCccccccceEEEccCCCEEEEEeCCCcEEEEecCCCccccccccccccccccc---------
Q 003087 208 LEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQV--------- 278 (849)
Q Consensus 208 ~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~--------- 278 (849)
...+.. ..+ ...+ |.+.|.+|+|||||++|||++.||+|+|||+.++++ +..+..........
T Consensus 225 ~~~~~~----~~~-~~~~--h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 296 (611)
T 1nr0_A 225 TGVFED----DSL-KNVA--HSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKV-EKTIPVGTRIEDQQLGIIWTKQA 296 (611)
T ss_dssp EEECBC----TTS-SSCS--SSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE-EEEEECCSSGGGCEEEEEECSSC
T ss_pred eeeecc----ccc-cccc--cCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCce-eeeecCCCCccceeEEEEEcCCE
Confidence 111100 000 1124 889999999999999999999999999999987654 33332110000000
Q ss_pred ------------ccc----cCCCCCCCCCCcEEEEEecCCE-EEEEEeCCcEEEEEecCCccccccCCCCCCeEEEEEe
Q 003087 279 ------------ADS----LFDGRTKPISDITDFAWWSDNI-LILARKSSIITMIDVLSGLKVKETDPKLRGHVFLLES 340 (849)
Q Consensus 279 ------------~~~----l~~~~~~~~~~v~~vaws~D~~-la~a~~dgti~lwdl~~~~~l~~~~~~~~g~~~~Le~ 340 (849)
.+. ......+|...|.+++|+|||. +++++.||+|++||+.+++....-...|.+.+..+..
T Consensus 297 l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~ 375 (611)
T 1nr0_A 297 LVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKT 375 (611)
T ss_dssp EEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEE
T ss_pred EEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEE
Confidence 000 0000024677899999999985 7889999999999999887432211234444444443
No 5
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.2e-31 Score=291.39 Aligned_cols=240 Identities=13% Similarity=0.152 Sum_probs=189.9
Q ss_pred ccccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecC-C
Q 003087 8 RKTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKAN-G 85 (849)
Q Consensus 8 ~~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~-g 85 (849)
.+...|.+++|+|+++++|+++ |++|+||+...+ .....+. .+...+.+++|||||++||+|+.||+|++|++. +
T Consensus 78 gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~--~~~~~~~-~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~ 154 (321)
T 3ow8_A 78 GHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENG--KQIKSID-AGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESG 154 (321)
T ss_dssp CCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT--EEEEEEE-CCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTC
T ss_pred cCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCC--CEEEEEe-CCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCC
Confidence 3567899999999999999998 789999997653 3333333 235567899999999999999999999999997 5
Q ss_pred ccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEE
Q 003087 86 EEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVIC 165 (849)
Q Consensus 86 ~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~s 165 (849)
+....+..+ ...|.+++|+|++.. +++++.||+|++||+.+++.... +. .|...|++
T Consensus 155 ~~~~~~~~~----~~~v~~~~~spdg~~-------lasg~~dg~i~iwd~~~~~~~~~-----------~~-~h~~~v~~ 211 (321)
T 3ow8_A 155 KKEYSLDTR----GKFILSIAYSPDGKY-------LASGAIDGIINIFDIATGKLLHT-----------LE-GHAMPIRS 211 (321)
T ss_dssp SEEEEEECS----SSCEEEEEECTTSSE-------EEEEETTSCEEEEETTTTEEEEE-----------EC-CCSSCCCE
T ss_pred ceeEEecCC----CceEEEEEECCCCCE-------EEEEcCCCeEEEEECCCCcEEEE-----------Ec-ccCCceeE
Confidence 554444332 246899999997643 66779999999999987654322 33 34567999
Q ss_pred EEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEE
Q 003087 166 TDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVA 245 (849)
Q Consensus 166 vafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LA 245 (849)
++|+|||++||+++.|++ |++|++.... . .....+ |...|.+++|||||++||
T Consensus 212 l~~spd~~~l~s~s~dg~-------------i~iwd~~~~~---~---------~~~~~~--h~~~v~~~~~sp~~~~l~ 264 (321)
T 3ow8_A 212 LTFSPDSQLLVTASDDGY-------------IKIYDVQHAN---L---------AGTLSG--HASWVLNVAFCPDDTHFV 264 (321)
T ss_dssp EEECTTSCEEEEECTTSC-------------EEEEETTTCC---E---------EEEECC--CSSCEEEEEECTTSSEEE
T ss_pred EEEcCCCCEEEEEcCCCe-------------EEEEECCCcc---e---------eEEEcC--CCCceEEEEECCCCCEEE
Confidence 999999999999998863 8999987642 1 112235 888999999999999999
Q ss_pred EEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EEEEEeCCcEEEEEec
Q 003087 246 TSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LILARKSSIITMIDVL 319 (849)
Q Consensus 246 s~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~a~~dgti~lwdl~ 319 (849)
|++.||+|+|||+.++++ +..+. +|...|.+++|+||+. |++++.||+|+|||.+
T Consensus 265 s~s~D~~v~iwd~~~~~~-~~~~~------------------~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 265 SSSSDKSVKVWDVGTRTC-VHTFF------------------DHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp EEETTSCEEEEETTTTEE-EEEEC------------------CCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred EEeCCCcEEEEeCCCCEE-EEEEc------------------CCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 999999999999998754 33332 3456799999999974 7889999999999975
No 6
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=6.9e-31 Score=288.98 Aligned_cols=260 Identities=12% Similarity=0.103 Sum_probs=195.6
Q ss_pred cccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCCcc
Q 003087 9 KTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANGEE 87 (849)
Q Consensus 9 ~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~~ 87 (849)
+.+.|++++|||||++||+|+ |++|+||+.... .....+.. +...|.+++|||||++||+|+.||+|++|++....
T Consensus 54 H~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~--~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~ 130 (340)
T 1got_B 54 HLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTT--NKVHAIPL-RSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTRE 130 (340)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTTEEEEEETTTC--CEEEEEEC-SSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCS
T ss_pred CCCceEEEEECCCCCEEEEEeCCCcEEEEECCCC--CcceEeec-CCccEEEEEECCCCCEEEEEeCCCeEEEEECccCC
Confidence 458899999999999999998 689999997643 33333332 35679999999999999999999999999986421
Q ss_pred -----ceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCc
Q 003087 88 -----ITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQN 162 (849)
Q Consensus 88 -----~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 162 (849)
...+.+ +...|.++.|++++ .+++++.||+|++||+.++.... ++. +|...
T Consensus 131 ~~~~~~~~~~~----h~~~v~~~~~~~~~--------~l~s~s~d~~i~~wd~~~~~~~~-----------~~~-~h~~~ 186 (340)
T 1got_B 131 GNVRVSRELAG----HTGYLSCCRFLDDN--------QIVTSSGDTTCALWDIETGQQTT-----------TFT-GHTGD 186 (340)
T ss_dssp BSCEEEEEEEC----CSSCEEEEEEEETT--------EEEEEETTSCEEEEETTTTEEEE-----------EEC-CCSSC
T ss_pred CcceeEEEecC----CCccEEEEEECCCC--------cEEEEECCCcEEEEECCCCcEEE-----------EEc-CCCCc
Confidence 122222 23578889987654 25667899999999998765432 234 34567
Q ss_pred eEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCC
Q 003087 163 VICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGK 242 (849)
Q Consensus 163 V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~ 242 (849)
|.+++|+|+|+++++|+.|++ |++|++..+.. + ..+.+ |...|.+++|+|||+
T Consensus 187 v~~~~~~~~~~~l~sg~~d~~-------------v~~wd~~~~~~---~---------~~~~~--h~~~v~~v~~~p~~~ 239 (340)
T 1got_B 187 VMSLSLAPDTRLFVSGACDAS-------------AKLWDVREGMC---R---------QTFTG--HESDINAICFFPNGN 239 (340)
T ss_dssp EEEEEECTTSSEEEEEETTSC-------------EEEEETTTCSE---E---------EEECC--CSSCEEEEEECTTSS
T ss_pred eEEEEECCCCCEEEEEeCCCc-------------EEEEECCCCee---E---------EEEcC--CcCCEEEEEEcCCCC
Confidence 999999999999999999973 89999876421 1 12234 788999999999999
Q ss_pred EEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EEEEEeCCcEEEEEecCC
Q 003087 243 FVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LILARKSSIITMIDVLSG 321 (849)
Q Consensus 243 ~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~a~~dgti~lwdl~~~ 321 (849)
+||+++.||+|+|||+.+.+. +..+.. ..+...|.+++|+|||. +++++.||+|+|||+.++
T Consensus 240 ~l~s~s~d~~v~iwd~~~~~~-~~~~~~----------------~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~ 302 (340)
T 1got_B 240 AFATGSDDATCRLFDLRADQE-LMTYSH----------------DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 302 (340)
T ss_dssp EEEEEETTSCEEEEETTTTEE-EEEECC----------------TTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred EEEEEcCCCcEEEEECCCCcE-EEEEcc----------------CCcccceEEEEECCCCCEEEEECCCCeEEEEEcccC
Confidence 999999999999999987643 222220 12234689999999986 678899999999999887
Q ss_pred ccccccCCCCCCeEEEEEe
Q 003087 322 LKVKETDPKLRGHVFLLES 340 (849)
Q Consensus 322 ~~l~~~~~~~~g~~~~Le~ 340 (849)
+.+. .-.+|.+.|..+..
T Consensus 303 ~~~~-~~~~h~~~v~~~~~ 320 (340)
T 1got_B 303 DRAG-VLAGHDNRVSCLGV 320 (340)
T ss_dssp CEEE-EEECCSSCEEEEEE
T ss_pred cEee-EeecCCCcEEEEEE
Confidence 6432 12245666665554
No 7
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=8.4e-31 Score=289.12 Aligned_cols=283 Identities=16% Similarity=0.127 Sum_probs=197.7
Q ss_pred ccc-ceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeee--ecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecC
Q 003087 9 KTK-KQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFN--CTGLGASIYGAWSESHDVLGIVDDTHTVYFFKAN 84 (849)
Q Consensus 9 ~~~-~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~--~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~ 84 (849)
+.+ .|++|+|||||++||+|+ |++|+||+..++ ....... ..+...|.+++|||||++||+|+.|++|+||++.
T Consensus 14 h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~--~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~ 91 (345)
T 3fm0_A 14 HPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGD--SWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKN 91 (345)
T ss_dssp STTSCEEEEEECTTSSCEEEEETTSCEEEEEEETT--EEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEEC
T ss_pred CCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCC--cceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEcc
Confidence 344 899999999999999998 689999997643 1111111 2236789999999999999999999999999987
Q ss_pred Cc---cceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCC
Q 003087 85 GE---EITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQ 161 (849)
Q Consensus 85 g~---~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 161 (849)
.. .+..+.+| ...|.+++|+|++. .|++++.||+|++|++..+...... ..+. .|..
T Consensus 92 ~~~~~~~~~~~~h----~~~v~~v~~sp~~~-------~l~s~s~D~~v~iwd~~~~~~~~~~--------~~~~-~h~~ 151 (345)
T 3fm0_A 92 QDDFECVTTLEGH----ENEVKSVAWAPSGN-------LLATCSRDKSVWVWEVDEEDEYECV--------SVLN-SHTQ 151 (345)
T ss_dssp CC-EEEEEEECCC----SSCEEEEEECTTSS-------EEEEEETTSCEEEEEECTTSCEEEE--------EEEC-CCCS
T ss_pred CCCeEEEEEccCC----CCCceEEEEeCCCC-------EEEEEECCCeEEEEECCCCCCeEEE--------EEec-CcCC
Confidence 43 23444333 35799999998654 3667799999999999865432111 1233 3456
Q ss_pred ceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCC
Q 003087 162 NVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQG 241 (849)
Q Consensus 162 ~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG 241 (849)
.|.+++|+|+|++||+++.|++ |++|+..... ... .....+ |...|.+|+|||||
T Consensus 152 ~v~~~~~~p~~~~l~s~s~d~~-------------i~~w~~~~~~---~~~-------~~~~~~--h~~~v~~l~~sp~g 206 (345)
T 3fm0_A 152 DVKHVVWHPSQELLASASYDDT-------------VKLYREEEDD---WVC-------CATLEG--HESTVWSLAFDPSG 206 (345)
T ss_dssp CEEEEEECSSSSCEEEEETTSC-------------EEEEEEETTE---EEE-------EEEECC--CSSCEEEEEECTTS
T ss_pred CeEEEEECCCCCEEEEEeCCCc-------------EEEEEecCCC---EEE-------EEEecC--CCCceEEEEECCCC
Confidence 7999999999999999999974 8999987541 000 012345 88899999999999
Q ss_pred CEEEEEeCCCcEEEEecCCCcccccccccccc-cccccccccCCCCCCCCCCcEEEEEecCCE-EEEEEeCCcEEEEEec
Q 003087 242 KFVATSDTNGCLYIFEMDKDNFSLSKFACGER-FDLQVADSLFDGRTKPISDITDFAWWSDNI-LILARKSSIITMIDVL 319 (849)
Q Consensus 242 ~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~-~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~a~~dgti~lwdl~ 319 (849)
++|||++.||+|+||+...... ......... ........+. +.|...|.+++|+|++. +++++.|++|+||++.
T Consensus 207 ~~l~s~s~D~~v~iW~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~ 282 (345)
T 3fm0_A 207 QRLASCSDDRTVRIWRQYLPGN-EQGVACSGSDPSWKCICTLS---GFHSRTIYDIAWCQLTGALATACGDDAIRVFQED 282 (345)
T ss_dssp SEEEEEETTSCEEEEEEECTTC-TTCCCCC---CEEEEEEEEC---SSCSSCEEEEEECTTTCCEEEEETTSCEEEEEEC
T ss_pred CEEEEEeCCCeEEEeccccCCC-CccceeeccCCccceeEEec---CCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeC
Confidence 9999999999999999743211 011110000 0000000011 12556799999999874 8899999999999998
Q ss_pred CCcccc-------c-cCCCCCCeEEEEEecc
Q 003087 320 SGLKVK-------E-TDPKLRGHVFLLESKS 342 (849)
Q Consensus 320 ~~~~l~-------~-~~~~~~g~~~~Le~~~ 342 (849)
++.... . ...+|.+.|..+...+
T Consensus 283 ~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p 313 (345)
T 3fm0_A 283 PNSDPQQPTFSLTAHLHQAHSQDVNCVAWNP 313 (345)
T ss_dssp TTSCTTSCCEEEEEEETTSSSSCEEEEEECS
T ss_pred CCCCcceeeEEEEeeecccccCcEeEeEEeC
Confidence 654211 1 1235677777777644
No 8
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=4.2e-31 Score=298.93 Aligned_cols=259 Identities=11% Similarity=0.111 Sum_probs=200.6
Q ss_pred cccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCC-c
Q 003087 9 KTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANG-E 86 (849)
Q Consensus 9 ~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g-~ 86 (849)
+.+.|++++|+|+|++||+|+ |++|+||+...+ .....+.. +...|.+++|+|||++||+|+.||+|+|||+.+ +
T Consensus 107 h~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~--~~~~~l~~-h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~ 183 (410)
T 1vyh_C 107 HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG--DFERTLKG-HTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFE 183 (410)
T ss_dssp CSSCEEEEEECSSSSEEEEEESSSCEEEEETTTC--CCCEEECC-CSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSC
T ss_pred cCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--cEEEEEec-cCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc
Confidence 457899999999999999998 689999997653 33333332 367899999999999999999999999999975 4
Q ss_pred cceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEE
Q 003087 87 EITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICT 166 (849)
Q Consensus 87 ~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~sv 166 (849)
.+..+.+| ...|.+++|+|++. .+++++.||+|++||+.++.... ++. +|...|.++
T Consensus 184 ~~~~~~~h----~~~V~~v~~~p~~~-------~l~s~s~D~~i~~wd~~~~~~~~-----------~~~-~h~~~v~~~ 240 (410)
T 1vyh_C 184 CIRTMHGH----DHNVSSVSIMPNGD-------HIVSASRDKTIKMWEVQTGYCVK-----------TFT-GHREWVRMV 240 (410)
T ss_dssp EEECCCCC----SSCEEEEEECSSSS-------EEEEEETTSEEEEEETTTCCEEE-----------EEE-CCSSCEEEE
T ss_pred eeEEEcCC----CCCEEEEEEeCCCC-------EEEEEeCCCeEEEEECCCCcEEE-----------EEe-CCCccEEEE
Confidence 44454433 25799999998653 36677999999999998776532 234 345679999
Q ss_pred EEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccC------
Q 003087 167 DYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQ------ 240 (849)
Q Consensus 167 afsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPD------ 240 (849)
+|+|+|++|++++.|++ |++|++..+.. . ....+ |...|.+++|+|+
T Consensus 241 ~~~~~g~~l~s~s~D~~-------------v~vwd~~~~~~---~---------~~~~~--h~~~v~~~~~~~~~~~~~~ 293 (410)
T 1vyh_C 241 RPNQDGTLIASCSNDQT-------------VRVWVVATKEC---K---------AELRE--HRHVVECISWAPESSYSSI 293 (410)
T ss_dssp EECTTSSEEEEEETTSC-------------EEEEETTTCCE---E---------EEECC--CSSCEEEEEECCSCGGGGG
T ss_pred EECCCCCEEEEEcCCCe-------------EEEEECCCCce---e---------eEecC--CCceEEEEEEcCcccccch
Confidence 99999999999999974 89999876421 1 11234 7789999999997
Q ss_pred --------------CCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EE
Q 003087 241 --------------GKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LI 305 (849)
Q Consensus 241 --------------G~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la 305 (849)
|.+||+++.||+|+|||+.++.+ +..+. +|...|.+++|+|+|. ++
T Consensus 294 ~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~-~~~~~------------------~h~~~v~~v~~~~~g~~l~ 354 (410)
T 1vyh_C 294 SEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC-LMTLV------------------GHDNWVRGVLFHSGGKFIL 354 (410)
T ss_dssp GGCCSCC-------CCEEEEEETTSEEEEEETTTTEE-EEEEE------------------CCSSCEEEEEECSSSSCEE
T ss_pred hhhccccccccCCCCCEEEEEeCCCeEEEEECCCCce-EEEEE------------------CCCCcEEEEEEcCCCCEEE
Confidence 77999999999999999998754 33332 3456799999999985 78
Q ss_pred EEEeCCcEEEEEecCCccccccCCCCCCeEEEEEe
Q 003087 306 LARKSSIITMIDVLSGLKVKETDPKLRGHVFLLES 340 (849)
Q Consensus 306 ~a~~dgti~lwdl~~~~~l~~~~~~~~g~~~~Le~ 340 (849)
+++.||+|+|||+.+++.+.. -.+|.+.|..+..
T Consensus 355 s~s~D~~i~vwd~~~~~~~~~-~~~h~~~v~~l~~ 388 (410)
T 1vyh_C 355 SCADDKTLRVWDYKNKRCMKT-LNAHEHFVTSLDF 388 (410)
T ss_dssp EEETTTEEEEECCTTSCCCEE-EECCSSCEEEEEE
T ss_pred EEeCCCeEEEEECCCCceEEE-EcCCCCcEEEEEE
Confidence 899999999999988764331 2245555655554
No 9
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.6e-30 Score=280.54 Aligned_cols=256 Identities=14% Similarity=0.152 Sum_probs=187.1
Q ss_pred ccccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCC--CCEEEEEeCCCcEEEEecC
Q 003087 8 RKTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSES--HDVLGIVDDTHTVYFFKAN 84 (849)
Q Consensus 8 ~~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPD--G~~LAs~~~dgtIrlWd~~ 84 (849)
.+.+.|++++|||||++||+|+ |++|+||+..+....+...+.. |.+.|.+++|+|+ |++||+|+.||+|+|||+.
T Consensus 7 ~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~g-H~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~ 85 (297)
T 2pm7_B 7 AHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTG-HEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEE 85 (297)
T ss_dssp SCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECC-CSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBS
T ss_pred CCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEcc-ccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcC
Confidence 4567899999999999999998 6899999976433334444432 3678999999974 9999999999999999997
Q ss_pred Cc---cceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCC
Q 003087 85 GE---EITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQ 161 (849)
Q Consensus 85 g~---~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 161 (849)
+. .+..+..| ...|.+++|+|+... ..|++++.||+|++|++.++..... ..+. .|..
T Consensus 86 ~~~~~~~~~~~~h----~~~v~~v~~~p~~~g-----~~l~s~s~d~~v~~wd~~~~~~~~~---------~~~~-~h~~ 146 (297)
T 2pm7_B 86 NGRWSQIAVHAVH----SASVNSVQWAPHEYG-----PMLLVASSDGKVSVVEFKENGTTSP---------IIID-AHAI 146 (297)
T ss_dssp SSCBCCCEEECCC----SSCEEEEEECCGGGC-----SEEEEEETTSEEEEEEBCSSSCBCC---------EEEE-CCSS
T ss_pred CCceEEEEEeecC----CCceeEEEeCcCCCC-----cEEEEEECCCcEEEEEecCCCceee---------eeee-cccC
Confidence 43 22333222 357999999885210 1367789999999999976532111 1233 3456
Q ss_pred ceEEEEEcCC-------------CceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCcc
Q 003087 162 NVICTDYHPE-------------LSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEV 228 (849)
Q Consensus 162 ~V~svafsPd-------------g~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h 228 (849)
.|++++|+|+ +++||+||.|++ |++|++..+..... ....+.+ |
T Consensus 147 ~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~-------------v~lwd~~~~~~~~~--------~~~~l~~--H 203 (297)
T 2pm7_B 147 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNL-------------VKIWKYNSDAQTYV--------LESTLEG--H 203 (297)
T ss_dssp CEEEEEECCCC------------CCEEEEEETTSC-------------EEEEEEETTTTEEE--------EEEEECC--C
T ss_pred ccceEeecCCcccccccCCCCCCcceEEEEcCCCc-------------EEEEEEcCCCceEE--------EEEEecC--C
Confidence 7999999997 579999999974 89999876421000 1112345 8
Q ss_pred ccccceEEEccCC---CEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-E
Q 003087 229 QLAHPKVLISPQG---KFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-L 304 (849)
Q Consensus 229 ~~~V~~vafSPDG---~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-l 304 (849)
...|.+|+|||+| ++|||++.||+|+|||+.+......... +.. ..+...|.+++|+|||. |
T Consensus 204 ~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~------------~~~--~~~~~~v~~~~~s~~g~~l 269 (297)
T 2pm7_B 204 SDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTL------------LKE--EKFPDVLWRASWSLSGNVL 269 (297)
T ss_dssp SSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEE------------SSS--SCCSSCEEEEEECSSSCCE
T ss_pred CCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceee------------eec--ccCCCcEEEEEECCCCCEE
Confidence 8999999999995 8999999999999999986421000000 000 13456799999999986 7
Q ss_pred EEEEeCCcEEEEEecC
Q 003087 305 ILARKSSIITMIDVLS 320 (849)
Q Consensus 305 a~a~~dgti~lwdl~~ 320 (849)
|+++.||+|+||+...
T Consensus 270 as~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 270 ALSGGDNKVTLWKENL 285 (297)
T ss_dssp EEEETTSCEEEEEECT
T ss_pred EEEcCCCcEEEEEECC
Confidence 8899999999999863
No 10
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=2.6e-31 Score=295.22 Aligned_cols=246 Identities=10% Similarity=0.016 Sum_probs=180.2
Q ss_pred ccceEEEEEcCCCCeEEEEeCCeEEEEecCCCCCcceeeeee-cCCCCEEEEEECCCCCEEEEEeCCCcEEEEecC-Ccc
Q 003087 10 TKKQVSLFISPRGERVAVAAVNQVTILQKDDDYQEPCGIFNC-TGLGASIYGAWSESHDVLGIVDDTHTVYFFKAN-GEE 87 (849)
Q Consensus 10 ~~~v~slafSPdG~~LAsas~~~i~iw~~~~~~~~~~~~~~~-~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~-g~~ 87 (849)
...|.+|+|||||++|+++.+++|+||+...+.......+.. .+...|++|+|||||++||+|+.||+|+|||+. ++.
T Consensus 94 ~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~ 173 (357)
T 4g56_B 94 EAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAV 173 (357)
T ss_dssp SSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEE
T ss_pred CCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcE
Confidence 367999999999998887778999999976542222222222 236789999999999999999999999999997 555
Q ss_pred ceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEE
Q 003087 88 ITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTD 167 (849)
Q Consensus 88 ~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~sva 167 (849)
+..+..| ...|.+|+|++++.. .+++++.||+|++||+.++....... +. .+...|.+++
T Consensus 174 ~~~~~~h----~~~v~~v~~s~~~~~------~~~s~~~dg~v~~wd~~~~~~~~~~~---------~~-~~~~~v~~v~ 233 (357)
T 4g56_B 174 LKSYNAH----SSEVNCVAACPGKDT------IFLSCGEDGRILLWDTRKPKPATRID---------FC-ASDTIPTSVT 233 (357)
T ss_dssp EEEECCC----SSCEEEEEECTTCSS------CEEEEETTSCEEECCTTSSSCBCBCC---------CT-TCCSCEEEEE
T ss_pred EEEEcCC----CCCEEEEEEccCCCc------eeeeeccCCceEEEECCCCceeeeee---------ec-cccccccchh
Confidence 5555443 357999999875421 26677999999999998766533221 11 2345699999
Q ss_pred EcCCC-ceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCC-CEEE
Q 003087 168 YHPEL-SLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQG-KFVA 245 (849)
Q Consensus 168 fsPdg-~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG-~~LA 245 (849)
|||++ ++||+|+.|+ .|++|++..+.. + ..+.+ |...|.+|+||||| ++||
T Consensus 234 ~sp~~~~~la~g~~d~-------------~i~~wd~~~~~~---~---------~~~~~--~~~~v~~l~~sp~~~~~la 286 (357)
T 4g56_B 234 WHPEKDDTFACGDETG-------------NVSLVNIKNPDS---A---------QTSAV--HSQNITGLAYSYHSSPFLA 286 (357)
T ss_dssp ECTTSTTEEEEEESSS-------------CEEEEESSCGGG---C---------EEECC--CSSCEEEEEECSSSSCCEE
T ss_pred hhhcccceEEEeeccc-------------ceeEEECCCCcE---e---------EEEec--cceeEEEEEEcCCCCCEEE
Confidence 99985 6788888776 389999876421 1 11234 77899999999998 5799
Q ss_pred EEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEec-CC-EEEEEEeCCcEEEEEecCCc
Q 003087 246 TSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWS-DN-ILILARKSSIITMIDVLSGL 322 (849)
Q Consensus 246 s~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~-D~-~la~a~~dgti~lwdl~~~~ 322 (849)
|++.||+|+|||+.+++. +..+ +|...|.+|+|+| |+ .+++++.||+|++|++++..
T Consensus 287 sgs~D~~i~iwd~~~~~~-~~~~-------------------~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 287 SISEDCTVAVLDADFSEV-FRDL-------------------SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp EEETTSCEEEECTTSCEE-EEEC-------------------CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC---
T ss_pred EEeCCCEEEEEECCCCcE-eEEC-------------------CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence 999999999999987743 2211 3557799999998 66 57889999999999997643
No 11
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.98 E-value=3.5e-31 Score=293.32 Aligned_cols=265 Identities=12% Similarity=0.097 Sum_probs=189.4
Q ss_pred cceEEEEEcCCCCeEEEEeCCeEEEEecC-----CCCCcce-eee--eecCCCCEEEEEECCCCCEEEEEeCCCcEEEEe
Q 003087 11 KKQVSLFISPRGERVAVAAVNQVTILQKD-----DDYQEPC-GIF--NCTGLGASIYGAWSESHDVLGIVDDTHTVYFFK 82 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas~~~i~iw~~~-----~~~~~~~-~~~--~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd 82 (849)
+.|.+++|||||++||+++++++++|+.. +....+. +.+ ...+...|.+++||||+ .|++|+.||+|+|||
T Consensus 31 ~~v~~~~fs~dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd 109 (344)
T 4gqb_B 31 RQLEAARYRSDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAVELWE 109 (344)
T ss_dssp SEEEEEEECTTSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEEEEEE
T ss_pred CCEEEEEECCCCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEEEEEe
Confidence 56999999999999999998888888632 1000000 000 01124579999999996 577999999999999
Q ss_pred cC-CccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCC
Q 003087 83 AN-GEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQ 161 (849)
Q Consensus 83 ~~-g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 161 (849)
+. |+.+........++...|.+|+|+|++. .|++++.||+|++||+.++.... ++. +|..
T Consensus 110 ~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~-------~l~sgs~d~~i~iwd~~~~~~~~-----------~~~-~h~~ 170 (344)
T 4gqb_B 110 LDENETLIVSKFCKYEHDDIVSTVSVLSSGT-------QAVSGSKDICIKVWDLAQQVVLS-----------SYR-AHAA 170 (344)
T ss_dssp ECTTSSCEEEEEEEECCSSCEEEEEECTTSS-------EEEEEETTSCEEEEETTTTEEEE-----------EEC-CCSS
T ss_pred ccCCCceeEeeccccCCCCCEEEEEECCCCC-------EEEEEeCCCeEEEEECCCCcEEE-----------EEc-CcCC
Confidence 97 5544333211112346899999999764 36677999999999998766533 244 3466
Q ss_pred ceEEEEEcCCCc-eEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccC
Q 003087 162 NVICTDYHPELS-LLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQ 240 (849)
Q Consensus 162 ~V~svafsPdg~-lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPD 240 (849)
.|++++|+|+|. +|+++|.|++ |++||+..+.....+. ..+ |...+.+++|+|+
T Consensus 171 ~V~~~~~~~~~~~~l~s~s~D~~-------------v~iwd~~~~~~~~~~~----------~~~--~~~~~~~~~~~p~ 225 (344)
T 4gqb_B 171 QVTCVAASPHKDSVFLSCSEDNR-------------ILLWDTRCPKPASQIG----------CSA--PGYLPTSLAWHPQ 225 (344)
T ss_dssp CEEEEEECSSCTTEEEEEETTSC-------------EEEEETTSSSCEEECC----------------CCCEEEEEECSS
T ss_pred ceEEEEecCCCCCceeeeccccc-------------cccccccccceeeeee----------cce--eeccceeeeecCC
Confidence 899999999995 6788988873 8999987653211111 011 4457889999995
Q ss_pred -CCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCC-E-EEEEEeCCcEEEEE
Q 003087 241 -GKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDN-I-LILARKSSIITMID 317 (849)
Q Consensus 241 -G~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~-~-la~a~~dgti~lwd 317 (849)
+++||+++.||+|+|||+.++++ +..+. .|...|.+++|+||+ . |++++.||+|+|||
T Consensus 226 ~~~~l~sg~~dg~v~~wd~~~~~~-~~~~~------------------~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd 286 (344)
T 4gqb_B 226 QSEVFVFGDENGTVSLVDTKSTSC-VLSSA------------------VHSQCVTGLVFSPHSVPFLASLSEDCSLAVLD 286 (344)
T ss_dssp CTTEEEEEETTSEEEEEESCC--C-CEEEE------------------CCSSCEEEEEECSSSSCCEEEEETTSCEEEEC
T ss_pred CCcceEEeccCCcEEEEECCCCcE-EEEEc------------------CCCCCEEEEEEccCCCeEEEEEeCCCeEEEEE
Confidence 67899999999999999998754 34433 355679999999997 3 78899999999999
Q ss_pred ecCCccccccCCCCCCeEEEEEec
Q 003087 318 VLSGLKVKETDPKLRGHVFLLESK 341 (849)
Q Consensus 318 l~~~~~l~~~~~~~~g~~~~Le~~ 341 (849)
+.+++.+. ..+|.+.|..|...
T Consensus 287 ~~~~~~~~--~~~H~~~V~~v~~s 308 (344)
T 4gqb_B 287 SSLSELFR--SQAHRDFVRDATWS 308 (344)
T ss_dssp TTCCEEEE--ECCCSSCEEEEEEC
T ss_pred CCCCcEEE--EcCCCCCEEEEEEe
Confidence 99887432 23466777776653
No 12
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.98 E-value=3e-30 Score=284.68 Aligned_cols=270 Identities=14% Similarity=0.188 Sum_probs=187.6
Q ss_pred cccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCCc-
Q 003087 9 KTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANGE- 86 (849)
Q Consensus 9 ~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~- 86 (849)
+.+.|.+|+|||||++||+|+ |++|+||+...+.......+. .+...|.+++|||||++||+|+.||+|++||+...
T Consensus 60 h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~-~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~ 138 (345)
T 3fm0_A 60 HQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLE-GHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEED 138 (345)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTS
T ss_pred cCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEcc-CCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCC
Confidence 457899999999999999998 689999997643212222222 23678999999999999999999999999999643
Q ss_pred c---ceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCce
Q 003087 87 E---ITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNV 163 (849)
Q Consensus 87 ~---~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V 163 (849)
. +..+..| ...|.+++|+|++. .|++++.||+|++|++..+..... .++.+ |...|
T Consensus 139 ~~~~~~~~~~h----~~~v~~~~~~p~~~-------~l~s~s~d~~i~~w~~~~~~~~~~---------~~~~~-h~~~v 197 (345)
T 3fm0_A 139 EYECVSVLNSH----TQDVKHVVWHPSQE-------LLASASYDDTVKLYREEEDDWVCC---------ATLEG-HESTV 197 (345)
T ss_dssp CEEEEEEECCC----CSCEEEEEECSSSS-------CEEEEETTSCEEEEEEETTEEEEE---------EEECC-CSSCE
T ss_pred CeEEEEEecCc----CCCeEEEEECCCCC-------EEEEEeCCCcEEEEEecCCCEEEE---------EEecC-CCCce
Confidence 2 2223222 35799999998654 366779999999999876542211 13443 45679
Q ss_pred EEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceecccc---ceeeccCCCccccccceEEEccC
Q 003087 164 ICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIE---GLYCEPKGHEVQLAHPKVLISPQ 240 (849)
Q Consensus 164 ~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~---~~~~~~~g~~h~~~V~~vafSPD 240 (849)
++++|+|+|++||++|.|++ |++|+.........+...... ..+....+ .|...|++++|+|+
T Consensus 198 ~~l~~sp~g~~l~s~s~D~~-------------v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~v~~~~~ 263 (345)
T 3fm0_A 198 WSLAFDPSGQRLASCSDDRT-------------VRIWRQYLPGNEQGVACSGSDPSWKCICTLSG-FHSRTIYDIAWCQL 263 (345)
T ss_dssp EEEEECTTSSEEEEEETTSC-------------EEEEEEECTTCTTCCCCC---CEEEEEEEECS-SCSSCEEEEEECTT
T ss_pred EEEEECCCCCEEEEEeCCCe-------------EEEeccccCCCCccceeeccCCccceeEEecC-CCCCcEEEEEEecC
Confidence 99999999999999999974 899987543211111100000 00111111 17789999999999
Q ss_pred CCEEEEEeCCCcEEEEecCCCccccc-ccccccccccccccccCCCCCCCCCCcEEEEEecCC--EEEEEEeCCcEEEEE
Q 003087 241 GKFVATSDTNGCLYIFEMDKDNFSLS-KFACGERFDLQVADSLFDGRTKPISDITDFAWWSDN--ILILARKSSIITMID 317 (849)
Q Consensus 241 G~~LAs~s~Dgtv~LWd~~~~~~~l~-~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~--~la~a~~dgti~lwd 317 (849)
|..||+++.|++|++|+......... .+.... + + ...|...|.+|+|+|++ .+|+++.||+|++|+
T Consensus 264 ~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~---~-----~---~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~ 332 (345)
T 3fm0_A 264 TGALATACGDDAIRVFQEDPNSDPQQPTFSLTA---H-----L---HQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWK 332 (345)
T ss_dssp TCCEEEEETTSCEEEEEECTTSCTTSCCEEEEE---E-----E---TTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred CCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEe---e-----e---cccccCcEeEeEEeCCCceEEEEcCCCCcEEEEE
Confidence 99999999999999999976532100 010000 0 0 02466789999999985 588999999999999
Q ss_pred ecCCcccc
Q 003087 318 VLSGLKVK 325 (849)
Q Consensus 318 l~~~~~l~ 325 (849)
+.+++.+.
T Consensus 333 ~~~~~~~~ 340 (345)
T 3fm0_A 333 YQRPEGLH 340 (345)
T ss_dssp ECC-----
T ss_pred ecCCCCcc
Confidence 99987654
No 13
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.97 E-value=1.7e-30 Score=283.51 Aligned_cols=253 Identities=11% Similarity=0.145 Sum_probs=187.8
Q ss_pred cccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCCcc
Q 003087 9 KTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANGEE 87 (849)
Q Consensus 9 ~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~~ 87 (849)
+...|.+++|||||++||+|+ |++|+||+...+ .....+.. +...|.+++|+|+|++|++|+.||+|++||+.++.
T Consensus 64 h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~--~~~~~~~~-h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~ 140 (319)
T 3frx_A 64 HSHIVQDCTLTADGAYALSASWDKTLRLWDVATG--ETYQRFVG-HKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQC 140 (319)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT--EEEEEEEC-CSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCE
T ss_pred CcccEEEEEECCCCCEEEEEeCCCEEEEEECCCC--CeeEEEcc-CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe
Confidence 457899999999999999998 789999998653 33334432 36789999999999999999999999999999887
Q ss_pred ceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEE
Q 003087 88 ITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTD 167 (849)
Q Consensus 88 ~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~sva 167 (849)
+..+.+|. ..|.++.|.|...... ....+++++.||+|++||+.+..... .+. +|...|++++
T Consensus 141 ~~~~~~h~----~~v~~~~~~~~~~~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~-----------~~~-~h~~~v~~~~ 203 (319)
T 3frx_A 141 LATLLGHN----DWVSQVRVVPNEKADD-DSVTIISAGNDKMVKAWNLNQFQIEA-----------DFI-GHNSNINTLT 203 (319)
T ss_dssp EEEECCCS----SCEEEEEECCC-------CCEEEEEETTSCEEEEETTTTEEEE-----------EEC-CCCSCEEEEE
T ss_pred EEEEeccC----CcEEEEEEccCCCCCC-CccEEEEEeCCCEEEEEECCcchhhe-----------eec-CCCCcEEEEE
Confidence 77765543 5789999987433211 11247888999999999997654322 234 3456799999
Q ss_pred EcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEE
Q 003087 168 YHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATS 247 (849)
Q Consensus 168 fsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~ 247 (849)
|||||++||++|.|+ .|++|++.... .+.. + . +...|.+++|||||++||++
T Consensus 204 ~sp~g~~l~s~~~dg-------------~i~iwd~~~~~---~~~~------~---~---~~~~v~~~~~sp~~~~la~~ 255 (319)
T 3frx_A 204 ASPDGTLIASAGKDG-------------EIMLWNLAAKK---AMYT------L---S---AQDEVFSLAFSPNRYWLAAA 255 (319)
T ss_dssp ECTTSSEEEEEETTC-------------EEEEEETTTTE---EEEE------E---E---CCSCEEEEEECSSSSEEEEE
T ss_pred EcCCCCEEEEEeCCC-------------eEEEEECCCCc---EEEE------e---c---CCCcEEEEEEcCCCCEEEEE
Confidence 999999999999997 38999987642 1111 1 1 34589999999999999988
Q ss_pred eCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EEEEEeCCcEEEEEecCC
Q 003087 248 DTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LILARKSSIITMIDVLSG 321 (849)
Q Consensus 248 s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~a~~dgti~lwdl~~~ 321 (849)
+.+ .+++|++..... +..+... ... ....+...+.+++|+|||+ |++++.||+|+|||+.++
T Consensus 256 ~~~-~i~v~~~~~~~~-~~~~~~~----~~~------~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 256 TAT-GIKVFSLDPQYL-VDDLRPE----FAG------YSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp ETT-EEEEEEETTEEE-EEEECCC----CTT------CCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred cCC-CcEEEEeCcCee-eeccCcc----ccc------cccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 755 599999986532 2222110 000 0012345688999999986 778999999999999875
No 14
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=6.3e-30 Score=280.33 Aligned_cols=275 Identities=12% Similarity=0.125 Sum_probs=191.6
Q ss_pred ccccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeec-CCCCEEEEEECCCCCEEEEEeCCCcEEEEecCC
Q 003087 8 RKTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCT-GLGASIYGAWSESHDVLGIVDDTHTVYFFKANG 85 (849)
Q Consensus 8 ~~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~-~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g 85 (849)
.+.+.|++++|||+ +||+|+ |++|+||+...+.......+... +...|.+++|||||++||+|+.||+|+|||+.+
T Consensus 12 ~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~ 89 (330)
T 2hes_X 12 LYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEE 89 (330)
T ss_dssp CCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC--
T ss_pred cCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEccc
Confidence 45678999999998 999997 68999999764322222223222 456899999999999999999999999999842
Q ss_pred --------ccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCC-CcccccccccCCcceec
Q 003087 86 --------EEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDP-SASISSASASSSGLTLR 156 (849)
Q Consensus 86 --------~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~-~~~~~~~~~~~~~~~l~ 156 (849)
+.+..+.+| ...|.+++|+|++. .|++++.||+|++||+.... ..... ..+.
T Consensus 90 ~~~~~~~~~~~~~~~~h----~~~V~~v~~sp~g~-------~las~s~D~~v~iwd~~~~~~~~~~~--------~~~~ 150 (330)
T 2hes_X 90 SADRTFEMDLLAIIEGH----ENEVKGVAWSNDGY-------YLATCSRDKSVWIWETDESGEEYECI--------SVLQ 150 (330)
T ss_dssp -----CCCEEEEEEC--------CEEEEEECTTSC-------EEEEEETTSCEEEEECCTTCCCCEEE--------EEEC
T ss_pred CcCccccceeEEEEcCC----CCcEEEEEECCCCC-------EEEEEeCCCEEEEEeccCCCCCeEEE--------EEec
Confidence 223333332 35799999999654 36777999999999995322 11111 1244
Q ss_pred cccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEE
Q 003087 157 RQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVL 236 (849)
Q Consensus 157 ~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~va 236 (849)
+|...|.+++|+|+|++||++|.|++ |++|+...+. .+. +....+ |...|++++
T Consensus 151 -~h~~~v~~v~~~p~~~~l~s~s~D~~-------------i~iW~~~~~~-~~~---------~~~~~~--h~~~v~~~~ 204 (330)
T 2hes_X 151 -EHSQDVKHVIWHPSEALLASSSYDDT-------------VRIWKDYDDD-WEC---------VAVLNG--HEGTVWSSD 204 (330)
T ss_dssp -CCSSCEEEEEECSSSSEEEEEETTSC-------------EEEEEEETTE-EEE---------EEEECC--CSSCEEEEE
T ss_pred -cCCCceEEEEECCCCCEEEEEcCCCe-------------EEEEECCCCC-eeE---------EEEccC--CCCcEEEEE
Confidence 44667999999999999999999974 8999986531 011 112345 888999999
Q ss_pred EccC--CCEEEEEeCCCcEEEEecCCCccc-ccccccccccccccccccCCCCCCCCCCcEEEEEecCCEEEEEEeCCcE
Q 003087 237 ISPQ--GKFVATSDTNGCLYIFEMDKDNFS-LSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNILILARKSSII 313 (849)
Q Consensus 237 fSPD--G~~LAs~s~Dgtv~LWd~~~~~~~-l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~la~a~~dgti 313 (849)
|+|+ |.+|||++.||+|+||++.+.... ...+.... .+. +.|...|.+++|++++.+++++.||+|
T Consensus 205 ~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~--------~~~---~~h~~~v~~v~~s~~~~l~s~~~dg~v 273 (330)
T 2hes_X 205 FDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEA--------ILP---DVHKRQVYNVAWGFNGLIASVGADGVL 273 (330)
T ss_dssp ECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEE--------ECC---SCCSSCEEEEEECTTSCEEEEETTSCE
T ss_pred ecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEee--------ecc---cccccceEEEEEcCCCEEEEEeCCCEE
Confidence 9999 789999999999999999754210 00110000 011 125577999999999989999999999
Q ss_pred EEEEecCCc--cccccCCCCCC-eEEEEEe
Q 003087 314 TMIDVLSGL--KVKETDPKLRG-HVFLLES 340 (849)
Q Consensus 314 ~lwdl~~~~--~l~~~~~~~~g-~~~~Le~ 340 (849)
+||++.+++ .+......|.+ .+..+..
T Consensus 274 ~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~ 303 (330)
T 2hes_X 274 AVYEEVDGEWKVFAKRALCHGVYEINVVKW 303 (330)
T ss_dssp EEEEEETTEEEEEEEESCTTTTSCEEEEEE
T ss_pred EEEEcCCCceEEEeccccccccceEEEEEE
Confidence 999998774 22221223444 5555544
No 15
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.97 E-value=1.4e-30 Score=289.18 Aligned_cols=265 Identities=12% Similarity=0.115 Sum_probs=185.1
Q ss_pred cccceEEEEEcCCCCeEEEEeC-------CeEEEEecCCCCCcceeee---eecCCCCEEEEEECCCCCEEEEEeCCCcE
Q 003087 9 KTKKQVSLFISPRGERVAVAAV-------NQVTILQKDDDYQEPCGIF---NCTGLGASIYGAWSESHDVLGIVDDTHTV 78 (849)
Q Consensus 9 ~~~~v~slafSPdG~~LAsas~-------~~i~iw~~~~~~~~~~~~~---~~~~~~~v~~vafSPDG~~LAs~~~dgtI 78 (849)
+.+.|.+|+|||||++||+||+ ++|++|+...+ .+...+ ...+...|.+++|||||++| +++.||+|
T Consensus 41 H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~--~~~~~~~~~~~~~~~~V~~~~~s~d~~~l-~~s~dg~v 117 (357)
T 4g56_B 41 MEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEG--APNESLCTAGVQTEAGVTDVAWVSEKGIL-VASDSGAV 117 (357)
T ss_dssp CCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC-----CGGGCSEEEECSSCEEEEEEETTTEEE-EEETTSCE
T ss_pred ccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCC--CcceeEecccCCCCCCEEEEEEcCCCCEE-EEECCCEE
Confidence 4577999999999999999984 46777765432 111111 12246779999999999766 56789999
Q ss_pred EEEecC-CccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceecc
Q 003087 79 YFFKAN-GEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRR 157 (849)
Q Consensus 79 rlWd~~-g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~ 157 (849)
+|||+. |+..........++...|.+|+|+|++. .+++++.||+|++||+.++..... +.
T Consensus 118 ~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~-------~l~sgs~dg~v~iwd~~~~~~~~~-----------~~- 178 (357)
T 4g56_B 118 ELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGT-------QAVSGGKDFSVKVWDLSQKAVLKS-----------YN- 178 (357)
T ss_dssp EEC--------CCCCEEECCCSSCEEEEEECSSSS-------EEEEEETTSCEEEEETTTTEEEEE-----------EC-
T ss_pred EEeeccccceeEEEeeccCCCCCCEEEEEECCCCC-------EEEEEeCCCeEEEEECCCCcEEEE-----------Ec-
Confidence 999986 4432222111112346899999998764 366679999999999987664322 33
Q ss_pred ccCCceEEEEEcCCCc-eEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEE
Q 003087 158 QFPQNVICTDYHPELS-LLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVL 236 (849)
Q Consensus 158 ~~~~~V~svafsPdg~-lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~va 236 (849)
.|...|++++|+|++. ++++++.|++ |++||+..+.....+ .... |...|.+|+
T Consensus 179 ~h~~~v~~v~~s~~~~~~~~s~~~dg~-------------v~~wd~~~~~~~~~~----------~~~~--~~~~v~~v~ 233 (357)
T 4g56_B 179 AHSSEVNCVAACPGKDTIFLSCGEDGR-------------ILLWDTRKPKPATRI----------DFCA--SDTIPTSVT 233 (357)
T ss_dssp CCSSCEEEEEECTTCSSCEEEEETTSC-------------EEECCTTSSSCBCBC----------CCTT--CCSCEEEEE
T ss_pred CCCCCEEEEEEccCCCceeeeeccCCc-------------eEEEECCCCceeeee----------eecc--ccccccchh
Confidence 3456799999999986 7788888863 899998764321111 0112 566899999
Q ss_pred EccC-CCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCC-E-EEEEEeCCcE
Q 003087 237 ISPQ-GKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDN-I-LILARKSSII 313 (849)
Q Consensus 237 fSPD-G~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~-~-la~a~~dgti 313 (849)
|||+ +++||+++.||+|+|||+.+++. +..+. .+...|.+++|+||+ . ||+++.||+|
T Consensus 234 ~sp~~~~~la~g~~d~~i~~wd~~~~~~-~~~~~------------------~~~~~v~~l~~sp~~~~~lasgs~D~~i 294 (357)
T 4g56_B 234 WHPEKDDTFACGDETGNVSLVNIKNPDS-AQTSA------------------VHSQNITGLAYSYHSSPFLASISEDCTV 294 (357)
T ss_dssp ECTTSTTEEEEEESSSCEEEEESSCGGG-CEEEC------------------CCSSCEEEEEECSSSSCCEEEEETTSCE
T ss_pred hhhcccceEEEeecccceeEEECCCCcE-eEEEe------------------ccceeEEEEEEcCCCCCEEEEEeCCCEE
Confidence 9998 57899999999999999987754 33332 244679999999987 3 7789999999
Q ss_pred EEEEecCCccccccCCCCCCeEEEEEec
Q 003087 314 TMIDVLSGLKVKETDPKLRGHVFLLESK 341 (849)
Q Consensus 314 ~lwdl~~~~~l~~~~~~~~g~~~~Le~~ 341 (849)
+|||+.+++.+.. -+|.+.|..|...
T Consensus 295 ~iwd~~~~~~~~~--~~H~~~V~~vafs 320 (357)
T 4g56_B 295 AVLDADFSEVFRD--LSHRDFVTGVAWS 320 (357)
T ss_dssp EEECTTSCEEEEE--CCCSSCEEEEEEC
T ss_pred EEEECCCCcEeEE--CCCCCCEEEEEEe
Confidence 9999998874431 1456666666653
No 16
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.97 E-value=2.8e-30 Score=292.11 Aligned_cols=238 Identities=12% Similarity=0.159 Sum_probs=187.7
Q ss_pred cccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecC-Cc
Q 003087 9 KTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKAN-GE 86 (849)
Q Consensus 9 ~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~-g~ 86 (849)
+.+.|.+|+|+|||++||+|+ |++|+||+.... .....+.. +...|.+++|+|||++|++|+.||+|++||+. |.
T Consensus 149 h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~--~~~~~~~~-h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~ 225 (410)
T 1vyh_C 149 HTDSVQDISFDHSGKLLASCSADMTIKLWDFQGF--ECIRTMHG-HDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY 225 (410)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCCCEEETTSS--CEEECCCC-CSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC
T ss_pred cCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC--ceeEEEcC-CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc
Confidence 457899999999999999998 689999997642 23333322 35689999999999999999999999999996 66
Q ss_pred cceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEE
Q 003087 87 EITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICT 166 (849)
Q Consensus 87 ~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~sv 166 (849)
.+..+.+|. ..|..+.|++++.. +++++.||+|++||+.++.... ++. .|...|.++
T Consensus 226 ~~~~~~~h~----~~v~~~~~~~~g~~-------l~s~s~D~~v~vwd~~~~~~~~-----------~~~-~h~~~v~~~ 282 (410)
T 1vyh_C 226 CVKTFTGHR----EWVRMVRPNQDGTL-------IASCSNDQTVRVWVVATKECKA-----------ELR-EHRHVVECI 282 (410)
T ss_dssp EEEEEECCS----SCEEEEEECTTSSE-------EEEEETTSCEEEEETTTCCEEE-----------EEC-CCSSCEEEE
T ss_pred EEEEEeCCC----ccEEEEEECCCCCE-------EEEEcCCCeEEEEECCCCceee-----------Eec-CCCceEEEE
Confidence 666655433 57899999886543 6667999999999998765432 233 345679999
Q ss_pred EEcCC--------------------CceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCC
Q 003087 167 DYHPE--------------------LSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGH 226 (849)
Q Consensus 167 afsPd--------------------g~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~ 226 (849)
+|+|+ |.+|++|+.|+ .|++|++..+. .+ ....+
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~-------------~i~iwd~~~~~---~~---------~~~~~- 336 (410)
T 1vyh_C 283 SWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK-------------TIKMWDVSTGM---CL---------MTLVG- 336 (410)
T ss_dssp EECCSCGGGGGGGCCSCC-------CCEEEEEETTS-------------EEEEEETTTTE---EE---------EEEEC-
T ss_pred EEcCcccccchhhhccccccccCCCCCEEEEEeCCC-------------eEEEEECCCCc---eE---------EEEEC-
Confidence 99997 67899999987 38999987642 11 12234
Q ss_pred ccccccceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EE
Q 003087 227 EVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LI 305 (849)
Q Consensus 227 ~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la 305 (849)
|...|.+|+|||+|++|+|++.||+|++||+.+.++ +..+. .|...|.+++|+|++. ++
T Consensus 337 -h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~-~~~~~------------------~h~~~v~~l~~~~~~~~l~ 396 (410)
T 1vyh_C 337 -HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRC-MKTLN------------------AHEHFVTSLDFHKTAPYVV 396 (410)
T ss_dssp -CSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCC-CEEEE------------------CCSSCEEEEEECSSSSCEE
T ss_pred -CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCce-EEEEc------------------CCCCcEEEEEEcCCCCEEE
Confidence 888999999999999999999999999999987754 33332 3456799999999985 88
Q ss_pred EEEeCCcEEEEEe
Q 003087 306 LARKSSIITMIDV 318 (849)
Q Consensus 306 ~a~~dgti~lwdl 318 (849)
+|+.||+|+||++
T Consensus 397 sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 397 TGSVDQTVKVWEC 409 (410)
T ss_dssp EEETTSEEEEEC-
T ss_pred EEeCCCcEEEEeC
Confidence 9999999999986
No 17
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.97 E-value=5.7e-30 Score=287.58 Aligned_cols=279 Identities=11% Similarity=0.079 Sum_probs=194.1
Q ss_pred cccceEEEEEcCCCCeEEEEeCCeEEEEecCCCCCcceeeeeec-----------------CCCCEEEEEECCCCCEEEE
Q 003087 9 KTKKQVSLFISPRGERVAVAAVNQVTILQKDDDYQEPCGIFNCT-----------------GLGASIYGAWSESHDVLGI 71 (849)
Q Consensus 9 ~~~~v~slafSPdG~~LAsas~~~i~iw~~~~~~~~~~~~~~~~-----------------~~~~v~~vafSPDG~~LAs 71 (849)
+.+.|.+++|||||++||+|++++++||+..++ .....+..+ +...|++++|||||++||+
T Consensus 63 h~~~V~~v~fspdg~~la~g~~~~v~i~~~~~g--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s 140 (393)
T 1erj_A 63 HTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDG--SLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 140 (393)
T ss_dssp CSSCCCEEEECTTSSEEEEECBSCEEEEETTTC--CEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred CCCEEEEEEECCCCCEEEEEcCCcEEEEEecCC--CEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence 456799999999999999999999999997653 222222211 1124899999999999999
Q ss_pred EeCCCcEEEEecC-CccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccC
Q 003087 72 VDDTHTVYFFKAN-GEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASS 150 (849)
Q Consensus 72 ~~~dgtIrlWd~~-g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~ 150 (849)
|+.||+|+|||+. ++.+..+.+| ...|.+++|+|++. .+++++.||+|++||+.++.....
T Consensus 141 ~~~d~~i~iwd~~~~~~~~~~~~h----~~~v~~~~~~p~~~-------~l~s~s~d~~v~iwd~~~~~~~~~------- 202 (393)
T 1erj_A 141 GAEDRLIRIWDIENRKIVMILQGH----EQDIYSLDYFPSGD-------KLVSGSGDRTVRIWDLRTGQCSLT------- 202 (393)
T ss_dssp EETTSCEEEEETTTTEEEEEECCC----SSCEEEEEECTTSS-------EEEEEETTSEEEEEETTTTEEEEE-------
T ss_pred EcCCCeEEEEECCCCcEEEEEccC----CCCEEEEEEcCCCC-------EEEEecCCCcEEEEECCCCeeEEE-------
Confidence 9999999999997 4444444433 25799999998654 366779999999999987654322
Q ss_pred CcceeccccCCceEEEEEcC-CCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccc
Q 003087 151 SGLTLRRQFPQNVICTDYHP-ELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQ 229 (849)
Q Consensus 151 ~~~~l~~~~~~~V~svafsP-dg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~ 229 (849)
+. +...|.+++|+| +|++||+++.|++ |++|++..+.....+... .....+ |.
T Consensus 203 ----~~--~~~~v~~~~~~~~~~~~l~~~s~d~~-------------v~iwd~~~~~~~~~~~~~-----~~~~~~--h~ 256 (393)
T 1erj_A 203 ----LS--IEDGVTTVAVSPGDGKYIAAGSLDRA-------------VRVWDSETGFLVERLDSE-----NESGTG--HK 256 (393)
T ss_dssp ----EE--CSSCEEEEEECSTTCCEEEEEETTSC-------------EEEEETTTCCEEEEEC-----------CC--CS
T ss_pred ----EE--cCCCcEEEEEECCCCCEEEEEcCCCc-------------EEEEECCCCcEEEeeccc-----ccCCCC--CC
Confidence 21 234699999999 9999999999873 899998764211111000 001134 88
Q ss_pred cccceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EEEEE
Q 003087 230 LAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LILAR 308 (849)
Q Consensus 230 ~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~a~ 308 (849)
..|.+|+|+|||++||+++.||+|+|||+.+... ........ ... ....+ .+|...|.+++|+|++. +++++
T Consensus 257 ~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~-~~~~~~~~-~~~-~~~~~----~~h~~~v~~~~~~~~~~~l~sgs 329 (393)
T 1erj_A 257 DSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANN-KSDSKTPN-SGT-CEVTY----IGHKDFVLSVATTQNDEYILSGS 329 (393)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEEC-----------------C-EEEEE----ECCSSCEEEEEECGGGCEEEEEE
T ss_pred CCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCC-cccccCCC-CCc-ceEEE----ecccCcEEEEEECCCCCEEEEEe
Confidence 8999999999999999999999999999986422 11100000 000 00000 13556799999999875 77899
Q ss_pred eCCcEEEEEecCCccccccCCCCCCeEEEEEec
Q 003087 309 KSSIITMIDVLSGLKVKETDPKLRGHVFLLESK 341 (849)
Q Consensus 309 ~dgti~lwdl~~~~~l~~~~~~~~g~~~~Le~~ 341 (849)
.||+|++||+.+++.+.. ..+|.+.+..+...
T Consensus 330 ~D~~v~iwd~~~~~~~~~-l~~h~~~v~~v~~~ 361 (393)
T 1erj_A 330 KDRGVLFWDKKSGNPLLM-LQGHRNSVISVAVA 361 (393)
T ss_dssp TTSEEEEEETTTCCEEEE-EECCSSCEEEEEEC
T ss_pred CCCeEEEEECCCCeEEEE-ECCCCCCEEEEEec
Confidence 999999999998875431 23466667666653
No 18
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.97 E-value=2.3e-30 Score=288.59 Aligned_cols=206 Identities=9% Similarity=0.017 Sum_probs=149.8
Q ss_pred CEEEEEECCCCCEEEEEe--CCCcEEEEecC-CccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEE
Q 003087 56 ASIYGAWSESHDVLGIVD--DTHTVYFFKAN-GEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQ 132 (849)
Q Consensus 56 ~v~~vafSPDG~~LAs~~--~dgtIrlWd~~-g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~l 132 (849)
.++.|+|||||++||+|+ .|++|||||+. ++++..+ .++ ..|.+|+|+|++.. +++ +.++.+++
T Consensus 135 ~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~-~~~----~~V~~v~fspdg~~-------l~s-~s~~~~~~ 201 (365)
T 4h5i_A 135 YTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEI-ETR----GEVKDLHFSTDGKV-------VAY-ITGSSLEV 201 (365)
T ss_dssp CEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEE-ECS----SCCCEEEECTTSSE-------EEE-ECSSCEEE
T ss_pred CEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEe-CCC----CceEEEEEccCCce-------EEe-ccceeEEE
Confidence 367899999999987554 68999999997 5555554 232 46899999997753 333 34666778
Q ss_pred EEecCCCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccce
Q 003087 133 IEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLY 212 (849)
Q Consensus 133 w~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~ 212 (849)
|+..++...... ... .+...|++++|+|||+.+++++.+++. ...+++|+...... .+.
T Consensus 202 ~~~~~~~~~~~~---------~~~-~~~~~v~~v~fspdg~~l~~~s~d~~~---------~~~i~~~~~~~~~~--~~~ 260 (365)
T 4h5i_A 202 ISTVTGSCIARK---------TDF-DKNWSLSKINFIADDTVLIAASLKKGK---------GIVLTKISIKSGNT--SVL 260 (365)
T ss_dssp EETTTCCEEEEE---------CCC-CTTEEEEEEEEEETTEEEEEEEESSSC---------CEEEEEEEEETTEE--EEE
T ss_pred EEeccCcceeee---------ecC-CCCCCEEEEEEcCCCCEEEEEecCCcc---------eeEEeeccccccee--cce
Confidence 877665542110 111 345579999999999999999988631 22477788765311 000
Q ss_pred eccccceeeccCCCccccccceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCC
Q 003087 213 TTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISD 292 (849)
Q Consensus 213 ~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 292 (849)
. .....+ |..+|.+|+|||||++||+|+.||+|+|||+.++++ +..+. ..|...
T Consensus 261 ~------~~~~~~--~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~-~~~~~-----------------~gH~~~ 314 (365)
T 4h5i_A 261 R------SKQVTN--RFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSM-SKIFK-----------------QAHSFA 314 (365)
T ss_dssp E------EEEEES--SCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEE-EEEET-----------------TSSSSC
T ss_pred e------eeeecC--CCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcE-EEEec-----------------CcccCC
Confidence 0 011234 778999999999999999999999999999998754 33321 146678
Q ss_pred cEEEEEecCCE-EEEEEeCCcEEEEEecCC
Q 003087 293 ITDFAWWSDNI-LILARKSSIITMIDVLSG 321 (849)
Q Consensus 293 v~~vaws~D~~-la~a~~dgti~lwdl~~~ 321 (849)
|.+|+|+|||+ ||+++.||+|+||+++..
T Consensus 315 V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 315 ITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred EEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 99999999996 789999999999999865
No 19
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.97 E-value=8.2e-30 Score=282.60 Aligned_cols=243 Identities=10% Similarity=0.094 Sum_probs=182.6
Q ss_pred cccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCc-------------------------------------------
Q 003087 9 KTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQE------------------------------------------- 44 (849)
Q Consensus 9 ~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~------------------------------------------- 44 (849)
+.+.|++++|||||++||+|+ |++|+||+.......
T Consensus 63 H~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~ 142 (354)
T 2pbi_B 63 HGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNEN 142 (354)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCC
T ss_pred CCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEecccccc
Confidence 558899999999999999998 689999996432100
Q ss_pred ---ceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecC-CccceecccccccccccEEEEEecCCccccccccee
Q 003087 45 ---PCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKAN-GEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCS 120 (849)
Q Consensus 45 ---~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~-g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~ 120 (849)
....+ ..+...|.+++|+|+++.|++|+.||+|+|||+. |+.+..+.+|. ..|.++.|+|+.. ...
T Consensus 143 ~~~~~~~~-~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~----~~v~~~~~~~~~~-----g~~ 212 (354)
T 2pbi_B 143 MAAKKKSV-AMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHG----ADVLCLDLAPSET-----GNT 212 (354)
T ss_dssp SGGGCEEE-EECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCS----SCEEEEEECCCSS-----CCE
T ss_pred ccccceee-eccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCC----CCeEEEEEEeCCC-----CCE
Confidence 00000 1134568899999999999999999999999997 66555554433 5688888876321 024
Q ss_pred EEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEE
Q 003087 121 FTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLW 200 (849)
Q Consensus 121 ~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW 200 (849)
|++++.||+|++||+.++..... +. .|...|++++|+|+|++||++|.|++ |++|
T Consensus 213 l~sgs~Dg~v~~wd~~~~~~~~~-----------~~-~h~~~v~~v~~~p~~~~l~s~s~D~~-------------v~lw 267 (354)
T 2pbi_B 213 FVSGGCDKKAMVWDMRSGQCVQA-----------FE-THESDVNSVRYYPSGDAFASGSDDAT-------------CRLY 267 (354)
T ss_dssp EEEEETTSCEEEEETTTCCEEEE-----------EC-CCSSCEEEEEECTTSSEEEEEETTSC-------------EEEE
T ss_pred EEEEeCCCeEEEEECCCCcEEEE-----------ec-CCCCCeEEEEEeCCCCEEEEEeCCCe-------------EEEE
Confidence 77789999999999987665332 33 34567999999999999999999974 8999
Q ss_pred EecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEEeCCCcEEEEecCCCccccccccccccccccccc
Q 003087 201 RRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVAD 280 (849)
Q Consensus 201 ~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~ 280 (849)
++..... +. .+. ... +..++.+++|||||++||+++.||+|+|||+.++.. +..+.
T Consensus 268 d~~~~~~---~~------~~~-~~~--~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~-~~~l~----------- 323 (354)
T 2pbi_B 268 DLRADRE---VA------IYS-KES--IIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSR-VSILF----------- 323 (354)
T ss_dssp ETTTTEE---EE------EEC-CTT--CCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSE-EEEEC-----------
T ss_pred ECCCCcE---EE------EEc-CCC--cccceeEEEEeCCCCEEEEEECCCcEEEEECCCCce-EEEEE-----------
Confidence 9876421 10 111 111 334788999999999999999999999999987643 22322
Q ss_pred ccCCCCCCCCCCcEEEEEecCCE-EEEEEeCCcEEEEE
Q 003087 281 SLFDGRTKPISDITDFAWWSDNI-LILARKSSIITMID 317 (849)
Q Consensus 281 ~l~~~~~~~~~~v~~vaws~D~~-la~a~~dgti~lwd 317 (849)
+|...|.+++|+|||. |++++.||+|+||+
T Consensus 324 -------~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 324 -------GHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp -------CCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred -------CCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 3567899999999985 78999999999996
No 20
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.97 E-value=8e-30 Score=280.49 Aligned_cols=240 Identities=13% Similarity=0.149 Sum_probs=184.4
Q ss_pred cccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCc--ceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecC-
Q 003087 9 KTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQE--PCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKAN- 84 (849)
Q Consensus 9 ~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~--~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~- 84 (849)
+...|.+++|||||++||+|+ |+.|+||+....... ....+ ..+.+.|.+++|+|+++ |++++.||+|++||+.
T Consensus 96 ~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~ 173 (340)
T 1got_B 96 RSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSREL-AGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIET 173 (340)
T ss_dssp SSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEE-ECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTT
T ss_pred CCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEe-cCCCccEEEEEECCCCc-EEEEECCCcEEEEECCC
Confidence 446799999999999999998 689999997643221 11112 22367889999999987 8899999999999996
Q ss_pred CccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceE
Q 003087 85 GEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVI 164 (849)
Q Consensus 85 g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~ 164 (849)
|+.+..+..|. ..|.+++|+|++. .|++++.||+|++||+.++.... ++. .|...|+
T Consensus 174 ~~~~~~~~~h~----~~v~~~~~~~~~~-------~l~sg~~d~~v~~wd~~~~~~~~-----------~~~-~h~~~v~ 230 (340)
T 1got_B 174 GQQTTTFTGHT----GDVMSLSLAPDTR-------LFVSGACDASAKLWDVREGMCRQ-----------TFT-GHESDIN 230 (340)
T ss_dssp TEEEEEECCCS----SCEEEEEECTTSS-------EEEEEETTSCEEEEETTTCSEEE-----------EEC-CCSSCEE
T ss_pred CcEEEEEcCCC----CceEEEEECCCCC-------EEEEEeCCCcEEEEECCCCeeEE-----------EEc-CCcCCEE
Confidence 66655554433 5799999998653 36677999999999998765432 233 3456799
Q ss_pred EEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEE
Q 003087 165 CTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFV 244 (849)
Q Consensus 165 svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~L 244 (849)
+++|+|+|++||+||.|++ |++|++.... .+.. + .+.+ +..+|.+++|||||++|
T Consensus 231 ~v~~~p~~~~l~s~s~d~~-------------v~iwd~~~~~---~~~~------~-~~~~--~~~~v~~~~~s~~g~~l 285 (340)
T 1got_B 231 AICFFPNGNAFATGSDDAT-------------CRLFDLRADQ---ELMT------Y-SHDN--IICGITSVSFSKSGRLL 285 (340)
T ss_dssp EEEECTTSSEEEEEETTSC-------------EEEEETTTTE---EEEE------E-CCTT--CCSCEEEEEECTTSSEE
T ss_pred EEEEcCCCCEEEEEcCCCc-------------EEEEECCCCc---EEEE------E-ccCC--cccceEEEEECCCCCEE
Confidence 9999999999999999973 8999987642 1111 1 1112 34579999999999999
Q ss_pred EEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EEEEEeCCcEEEEE
Q 003087 245 ATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LILARKSSIITMID 317 (849)
Q Consensus 245 As~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~a~~dgti~lwd 317 (849)
|+++.||+|++||+.+... +..+. +|...|.+++|+|||. +++|+.||+|+|||
T Consensus 286 ~~g~~d~~i~vwd~~~~~~-~~~~~------------------~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 286 LAGYDDFNCNVWDALKADR-AGVLA------------------GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEETTSEEEEEETTTCCE-EEEEE------------------CCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEECCCCeEEEEEcccCcE-eeEee------------------cCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 9999999999999987643 23332 3557899999999985 88999999999996
No 21
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.97 E-value=2.9e-30 Score=288.71 Aligned_cols=274 Identities=12% Similarity=0.084 Sum_probs=196.2
Q ss_pred cccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCCcc
Q 003087 9 KTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANGEE 87 (849)
Q Consensus 9 ~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~~ 87 (849)
+.+.|++++|||||++||+|+ |++|+||+...+ .....+.. +...|.+++|||||++||+|+.|++|++|++....
T Consensus 65 H~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~--~~~~~~~~-h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~ 141 (380)
T 3iz6_a 65 HSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTS--QKTHAIKL-HCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQA 141 (380)
T ss_dssp CSSCEEEEEECTTSSCEEEEETTSEEEEEETTTT--EEEEEEEC-CCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCS
T ss_pred cccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--ccceEEec-CCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCc
Confidence 457899999999999999998 689999997642 23333332 36678999999999999999999999999986321
Q ss_pred --------ceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceecccc
Q 003087 88 --------ITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQF 159 (849)
Q Consensus 88 --------~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~ 159 (849)
...+.+ +...|.++.|.|+.. ..|++++.||+|++||+.++.....+. ..+..+|
T Consensus 142 ~~~~~~~~~~~~~g----h~~~v~~~~~~~~~~------~~l~s~s~D~~i~~wd~~~~~~~~~~~-------~~~~~~h 204 (380)
T 3iz6_a 142 DRDGNMPVSRVLTG----HKGYASSCQYVPDQE------TRLITGSGDQTCVLWDVTTGQRISIFG-------SEFPSGH 204 (380)
T ss_dssp SCCCSSTTCCBCCC----CSSCCCCCBCCSSSS------SCEEEECTTSCEEEECTTTCCEEEEEC-------CCSSSSC
T ss_pred cccCCccceeeccC----CCcceEEEEEecCCC------CEEEEECCCCcEEEEEcCCCcEEEEee-------cccCCCC
Confidence 112222 234577788876421 137778999999999998876543322 0111245
Q ss_pred CCceEEEEEcC-CCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEc
Q 003087 160 PQNVICTDYHP-ELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLIS 238 (849)
Q Consensus 160 ~~~V~svafsP-dg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafS 238 (849)
...|.+++|+| ++++|++||.|++ |++||+..... .+ ....+ |...|.+|+|+
T Consensus 205 ~~~v~~~~~~~~~~~~l~sgs~D~~-------------v~~wd~~~~~~--~~---------~~~~~--h~~~v~~v~~~ 258 (380)
T 3iz6_a 205 TADVLSLSINSLNANMFISGSCDTT-------------VRLWDLRITSR--AV---------RTYHG--HEGDINSVKFF 258 (380)
T ss_dssp CSCEEEEEECSSSCCEEEEEETTSC-------------EEEEETTTTCC--CC---------EEECC--CSSCCCEEEEC
T ss_pred ccCeEEEEeecCCCCEEEEEECCCe-------------EEEEECCCCCc--ce---------EEECC--cCCCeEEEEEe
Confidence 66799999987 8999999999974 89999864211 11 12235 88899999999
Q ss_pred cCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EEEEEeCCcEEEEE
Q 003087 239 PQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LILARKSSIITMID 317 (849)
Q Consensus 239 PDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~a~~dgti~lwd 317 (849)
|||++|||++.||+|+|||+.++.. +..+..... .. ..+...|.+++|+|+|. +++++.||+|+|||
T Consensus 259 p~~~~l~s~s~D~~i~lwd~~~~~~-~~~~~~~~~---------~~--~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd 326 (380)
T 3iz6_a 259 PDGQRFGTGSDDGTCRLFDMRTGHQ-LQVYNREPD---------RN--DNELPIVTSVAFSISGRLLFAGYSNGDCYVWD 326 (380)
T ss_dssp TTSSEEEEECSSSCEEEEETTTTEE-EEEECCCCS---------SS--CCSSCSCSEEEECSSSSEEEEECTTSCEEEEE
T ss_pred cCCCeEEEEcCCCeEEEEECCCCcE-EEEeccccc---------cc--ccccCceEEEEECCCCCEEEEEECCCCEEEEE
Confidence 9999999999999999999998754 333321110 00 12234588999999986 66788999999999
Q ss_pred ecCCcccc---ccCCCCCCeEEEEEe
Q 003087 318 VLSGLKVK---ETDPKLRGHVFLLES 340 (849)
Q Consensus 318 l~~~~~l~---~~~~~~~g~~~~Le~ 340 (849)
+.+++.+. ....+|.+.|..|..
T Consensus 327 ~~~~~~~~~~~~~~~~h~~~v~~l~~ 352 (380)
T 3iz6_a 327 TLLAEMVLNLGTLQNSHEGRISCLGL 352 (380)
T ss_dssp TTTCCEEEEECCSCSSCCCCCCEEEE
T ss_pred CCCCceEEEEecccCCCCCceEEEEE
Confidence 98877443 112355555555444
No 22
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.97 E-value=5.3e-30 Score=279.16 Aligned_cols=256 Identities=11% Similarity=0.115 Sum_probs=181.9
Q ss_pred cccccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECC--CCCEEEEEeCCCcEEEEec
Q 003087 7 PRKTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSE--SHDVLGIVDDTHTVYFFKA 83 (849)
Q Consensus 7 ~~~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSP--DG~~LAs~~~dgtIrlWd~ 83 (849)
+.+.+.|++++|||||++||+|+ |++|+||+...+.......+. .|...|.+|+|+| +|++||||+.||+|+|||+
T Consensus 10 ~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~-gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~ 88 (316)
T 3bg1_A 10 TSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLR-GHEGPVWQVAWAHPMYGNILASCSYDRKVIIWRE 88 (316)
T ss_dssp ----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEE-CCSSCEEEEEECCGGGSSCEEEEETTSCEEEECC
T ss_pred ccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEc-CCCccEEEEEeCCCCCCCEEEEEECCCEEEEEEC
Confidence 44668899999999999999998 689999997643211222333 2367899999997 4999999999999999999
Q ss_pred CCc---cceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccC
Q 003087 84 NGE---EITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFP 160 (849)
Q Consensus 84 ~g~---~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~ 160 (849)
... .+..+..| ...|.+++|+|+... ..|++++.||+|++|++..+...... ..+. .|.
T Consensus 89 ~~~~~~~~~~~~~h----~~~V~~v~~~p~~~g-----~~lasgs~D~~i~lwd~~~~~~~~~~--------~~~~-~h~ 150 (316)
T 3bg1_A 89 ENGTWEKSHEHAGH----DSSVNSVCWAPHDYG-----LILACGSSDGAISLLTYTGEGQWEVK--------KINN-AHT 150 (316)
T ss_dssp SSSCCCEEEEECCC----SSCCCEEEECCTTTC-----SCEEEECSSSCEEEEEECSSSCEEEC--------CBTT-SSS
T ss_pred CCCcceEEEEccCC----CCceEEEEECCCCCC-----cEEEEEcCCCCEEEEecCCCCCccee--------eeec-ccc
Confidence 743 22333222 357899999985211 13677799999999999765321100 1122 345
Q ss_pred CceEEEEEcCC-----------------CceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeecc
Q 003087 161 QNVICTDYHPE-----------------LSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEP 223 (849)
Q Consensus 161 ~~V~svafsPd-----------------g~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~ 223 (849)
..|.+++|+|+ +++||+||.|++ |++|++........ ...+
T Consensus 151 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~-------------v~lWd~~~~~~~~~---------~~~l 208 (316)
T 3bg1_A 151 IGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNL-------------IKLWKEEEDGQWKE---------EQKL 208 (316)
T ss_dssp SCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSB-------------CCEEEECTTSCEEE---------EECC
T ss_pred CCcceEEEccccCCccccccccccCccccceEEEecCCCe-------------EEEEEeCCCCccce---------eeec
Confidence 67999999998 478999988874 89999864311111 1123
Q ss_pred CCCccccccceEEEccCC----CEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEe
Q 003087 224 KGHEVQLAHPKVLISPQG----KFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWW 299 (849)
Q Consensus 224 ~g~~h~~~V~~vafSPDG----~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws 299 (849)
.+ |...|.+|+|||+| ++|||++.||+|+||++.+... ..+.... + ..|...|.+++|+
T Consensus 209 ~~--h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~--~~~~~~~---------~----~~~~~~v~~v~~s 271 (316)
T 3bg1_A 209 EA--HSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASS--NTWSPKL---------L----HKFNDVVWHVSWS 271 (316)
T ss_dssp BC--CSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTC--CCCBCCE---------E----EECSSCEEEEEEC
T ss_pred cc--CCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccc--cchhhhh---------h----hcCCCcEEEEEEc
Confidence 45 88899999999997 8999999999999999986311 0111000 0 0234679999999
Q ss_pred cCCE-EEEEEeCCcEEEEEecC
Q 003087 300 SDNI-LILARKSSIITMIDVLS 320 (849)
Q Consensus 300 ~D~~-la~a~~dgti~lwdl~~ 320 (849)
||+. ||+++.||+|+||+...
T Consensus 272 p~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 272 ITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp TTTCCEEEEESSSCEEEEEECT
T ss_pred CCCCEEEEEcCCCeEEEEEECC
Confidence 9985 78899999999999863
No 23
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.97 E-value=2.6e-29 Score=276.50 Aligned_cols=247 Identities=13% Similarity=0.147 Sum_probs=184.7
Q ss_pred ccccceEEEEE-----cC-CCCeEEEEe-CCeEEEEecCCCC-----CcceeeeeecCCCCEEEEEECCCCCEEEEEeCC
Q 003087 8 RKTKKQVSLFI-----SP-RGERVAVAA-VNQVTILQKDDDY-----QEPCGIFNCTGLGASIYGAWSESHDVLGIVDDT 75 (849)
Q Consensus 8 ~~~~~v~slaf-----SP-dG~~LAsas-~~~i~iw~~~~~~-----~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~d 75 (849)
.+.+.|++|+| +| ||++||+|+ |++|+||+..... +.+...+. .+...|.+++|||||++||+|+.|
T Consensus 19 gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~-~h~~~V~~~~~~~~~~~l~s~s~D 97 (343)
T 2xzm_R 19 GHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALT-GHNHFVSDLALSQENCFAISSSWD 97 (343)
T ss_dssp CCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEEC-CCSSCEEEEEECSSTTEEEEEETT
T ss_pred cchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhc-cCCCceEEEEECCCCCEEEEEcCC
Confidence 35688999999 77 999999998 6899999975431 11222222 236689999999999999999999
Q ss_pred CcEEEEecC-CccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcce
Q 003087 76 HTVYFFKAN-GEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLT 154 (849)
Q Consensus 76 gtIrlWd~~-g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~ 154 (849)
|+|+|||+. |+.+..+..|. ..|.+++|+|++. .+++++.||+|++||+......... .
T Consensus 98 ~~v~lwd~~~~~~~~~~~~h~----~~v~~v~~sp~~~-------~l~s~~~d~~i~~wd~~~~~~~~~~---------~ 157 (343)
T 2xzm_R 98 KTLRLWDLRTGTTYKRFVGHQ----SEVYSVAFSPDNR-------QILSAGAEREIKLWNILGECKFSSA---------E 157 (343)
T ss_dssp SEEEEEETTSSCEEEEEECCC----SCEEEEEECSSTT-------EEEEEETTSCEEEEESSSCEEEECC---------T
T ss_pred CcEEEEECCCCcEEEEEcCCC----CcEEEEEECCCCC-------EEEEEcCCCEEEEEeccCCceeeee---------c
Confidence 999999996 66655655443 5799999998654 3667799999999998632211110 0
Q ss_pred eccccCCceEEEEEcCCC----------ceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccC
Q 003087 155 LRRQFPQNVICTDYHPEL----------SLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPK 224 (849)
Q Consensus 155 l~~~~~~~V~svafsPdg----------~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~ 224 (849)
. ..|...|.+++|+|++ .+|++++.|+ .|++|+.... .. ....
T Consensus 158 ~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~-------------~i~iwd~~~~----~~---------~~~~ 210 (343)
T 2xzm_R 158 K-ENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDG-------------RLKVWNTNFQ----IR---------YTFK 210 (343)
T ss_dssp T-TSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTS-------------EEEEEETTTE----EE---------EEEE
T ss_pred c-cCCCceeeeeeeccccccccccCCCCCEEEEEcCCC-------------EEEEEcCCCc----ee---------EEEc
Confidence 1 1345679999999998 7899999997 3899994321 11 1123
Q ss_pred CCccccccceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCEE
Q 003087 225 GHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNIL 304 (849)
Q Consensus 225 g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~l 304 (849)
+ |...|.+++|||||++|||++.||+|+|||+.+.......+. +...|.+++|+|++.+
T Consensus 211 ~--h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~-------------------~~~~v~~v~~sp~~~~ 269 (343)
T 2xzm_R 211 A--HESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFD-------------------AGSTINQIAFNPKLQW 269 (343)
T ss_dssp C--CSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEE-------------------CSSCEEEEEECSSSCE
T ss_pred C--ccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeec-------------------CCCcEEEEEECCCCCE
Confidence 4 788999999999999999999999999999954322111111 1235899999999988
Q ss_pred EEEEeCCcEEEEEecCCcc
Q 003087 305 ILARKSSIITMIDVLSGLK 323 (849)
Q Consensus 305 a~a~~dgti~lwdl~~~~~ 323 (849)
++++.|++|+||++.+++.
T Consensus 270 la~~~d~~v~iw~~~~~~~ 288 (343)
T 2xzm_R 270 VAVGTDQGVKIFNLMTQSK 288 (343)
T ss_dssp EEEEESSCEEEEESSSCCS
T ss_pred EEEECCCCEEEEEeCCCCC
Confidence 8888899999999987753
No 24
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.97 E-value=1.7e-29 Score=300.57 Aligned_cols=265 Identities=14% Similarity=0.095 Sum_probs=187.7
Q ss_pred cccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeee-------------------------------------
Q 003087 9 KTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFN------------------------------------- 50 (849)
Q Consensus 9 ~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~------------------------------------- 50 (849)
+...|++++|||||++||+|+ |++|+||+...........+.
T Consensus 58 h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~ 137 (611)
T 1nr0_A 58 HSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTG 137 (611)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTC
T ss_pred CCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCC
Confidence 457899999999999999998 689999997532111110000
Q ss_pred -----e-cCCCCEEEEEECCCCC-EEEEEeCCCcEEEEecC-CccceecccccccccccEEEEEecCCcccccccceeEE
Q 003087 51 -----C-TGLGASIYGAWSESHD-VLGIVDDTHTVYFFKAN-GEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFT 122 (849)
Q Consensus 51 -----~-~~~~~v~~vafSPDG~-~LAs~~~dgtIrlWd~~-g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~ 122 (849)
. .+...|++++|||||. +||+|+.|++|++||.. ++.+..+.+| ...|.+++|+|++.. |+
T Consensus 138 ~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H----~~~V~~v~fspdg~~-------la 206 (611)
T 1nr0_A 138 TSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEH----TKFVHSVRYNPDGSL-------FA 206 (611)
T ss_dssp CBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCC----SSCEEEEEECTTSSE-------EE
T ss_pred CCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccc----cCceEEEEECCCCCE-------EE
Confidence 0 1234678888888886 59999999999999976 4444454433 357999999997643 66
Q ss_pred EEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEe
Q 003087 123 VFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRR 202 (849)
Q Consensus 123 ~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~ 202 (849)
+++.||+|++||+.++.....+. ....... +|...|.+++|||||++||++|.|++ |++|++
T Consensus 207 s~s~D~~i~lwd~~~g~~~~~~~----~~~~~~~-~h~~~V~~v~~spdg~~l~s~s~D~~-------------v~lWd~ 268 (611)
T 1nr0_A 207 STGGDGTIVLYNGVDGTKTGVFE----DDSLKNV-AHSGSVFGLTWSPDGTKIASASADKT-------------IKIWNV 268 (611)
T ss_dssp EEETTSCEEEEETTTCCEEEECB----CTTSSSC-SSSSCEEEEEECTTSSEEEEEETTSE-------------EEEEET
T ss_pred EEECCCcEEEEECCCCcEeeeec----ccccccc-ccCCCEEEEEECCCCCEEEEEeCCCe-------------EEEEeC
Confidence 77999999999988766533221 0000111 35668999999999999999999985 666665
Q ss_pred cCCcCccc--------------------ceeccccc-----------eeeccCCCccccccceEEEccCCCEEEEEeCCC
Q 003087 203 CHNLELEQ--------------------LYTTQIEG-----------LYCEPKGHEVQLAHPKVLISPQGKFVATSDTNG 251 (849)
Q Consensus 203 ~~~~~~~~--------------------l~~~~~~~-----------~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dg 251 (849)
.++..... +.+....+ ......| |...|.+++|||||++|||++.||
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~g--h~~~v~~l~~spdg~~l~s~s~D~ 346 (611)
T 1nr0_A 269 ATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYG--HNKAITALSSSADGKTLFSADAEG 346 (611)
T ss_dssp TTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECC--CSSCEEEEEECTTSSEEEEEETTS
T ss_pred CCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcC--CCCCEEEEEEeCCCCEEEEEeCCC
Confidence 43211000 00000000 1122346 889999999999999999999999
Q ss_pred cEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCEEEEEEeCCcEEEEEecCCc
Q 003087 252 CLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNILILARKSSIITMIDVLSGL 322 (849)
Q Consensus 252 tv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~la~a~~dgti~lwdl~~~~ 322 (849)
+|++||+.++.+ ...+. ..|...|.+++|++++.+++++.|+++++|++.++.
T Consensus 347 ~v~~Wd~~~~~~-~~~~~-----------------~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~ 399 (611)
T 1nr0_A 347 HINSWDISTGIS-NRVFP-----------------DVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSG 399 (611)
T ss_dssp CEEEEETTTCCE-EECSS-----------------CSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSS
T ss_pred cEEEEECCCCce-eeecc-----------------cCCcceEEEEEECCCCcEEEEEcCCceEEeecCCcc
Confidence 999999998743 22211 135567999999999999999999999999988754
No 25
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.97 E-value=1.4e-29 Score=284.47 Aligned_cols=256 Identities=10% Similarity=0.022 Sum_probs=183.5
Q ss_pred ceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecC-Cccce
Q 003087 12 KQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKAN-GEEIT 89 (849)
Q Consensus 12 ~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~-g~~~~ 89 (849)
.|.+++|||||++||+|+ |++|+||+.... .....+. .+...|.+++|+|||++|++|+.||+|++||+. |+...
T Consensus 125 ~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~--~~~~~~~-~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~ 201 (393)
T 1erj_A 125 YIRSVCFSPDGKFLATGAEDRLIRIWDIENR--KIVMILQ-GHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSL 201 (393)
T ss_dssp BEEEEEECTTSSEEEEEETTSCEEEEETTTT--EEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred eEEEEEECCCCCEEEEEcCCCeEEEEECCCC--cEEEEEc-cCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEE
Confidence 489999999999999998 689999997642 3333332 236689999999999999999999999999997 44433
Q ss_pred ecccccccccccEEEEEecC-CcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEE
Q 003087 90 RFTNKHLKVSLPIIGLIAQD-ETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDY 168 (849)
Q Consensus 90 ~l~~~~~~~~~~V~~l~fs~-~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svaf 168 (849)
.+. + ...|.+++|+| ++. .|++++.||+|++||+.++.....+. ....... +|...|.+++|
T Consensus 202 ~~~-~----~~~v~~~~~~~~~~~-------~l~~~s~d~~v~iwd~~~~~~~~~~~----~~~~~~~-~h~~~v~~v~~ 264 (393)
T 1erj_A 202 TLS-I----EDGVTTVAVSPGDGK-------YIAAGSLDRAVRVWDSETGFLVERLD----SENESGT-GHKDSVYSVVF 264 (393)
T ss_dssp EEE-C----SSCEEEEEECSTTCC-------EEEEEETTSCEEEEETTTCCEEEEEC----------C-CCSSCEEEEEE
T ss_pred EEE-c----CCCcEEEEEECCCCC-------EEEEEcCCCcEEEEECCCCcEEEeec----ccccCCC-CCCCCEEEEEE
Confidence 332 2 24688999987 443 36677999999999998765432221 0001112 34567999999
Q ss_pred cCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEEe
Q 003087 169 HPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSD 248 (849)
Q Consensus 169 sPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s 248 (849)
+|+|++||+++.|++ |++|++......................+ |...|.+++|+|+|++|||++
T Consensus 265 ~~~g~~l~s~s~d~~-------------v~~wd~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~sgs 329 (393)
T 1erj_A 265 TRDGQSVVSGSLDRS-------------VKLWNLQNANNKSDSKTPNSGTCEVTYIG--HKDFVLSVATTQNDEYILSGS 329 (393)
T ss_dssp CTTSSEEEEEETTSE-------------EEEEEC---------------CEEEEEEC--CSSCEEEEEECGGGCEEEEEE
T ss_pred CCCCCEEEEEeCCCE-------------EEEEECCCCCCcccccCCCCCcceEEEec--ccCcEEEEEECCCCCEEEEEe
Confidence 999999999999973 89999875321111100000011112345 888999999999999999999
Q ss_pred CCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEec------CC-EEEEEEeCCcEEEEEecCC
Q 003087 249 TNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWS------DN-ILILARKSSIITMIDVLSG 321 (849)
Q Consensus 249 ~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~------D~-~la~a~~dgti~lwdl~~~ 321 (849)
.||+|++||+.+++. +..+. .|...|.+++|++ ++ .+++|+.||+|+||++...
T Consensus 330 ~D~~v~iwd~~~~~~-~~~l~------------------~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 330 KDRGVLFWDKKSGNP-LLMLQ------------------GHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp TTSEEEEEETTTCCE-EEEEE------------------CCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred CCCeEEEEECCCCeE-EEEEC------------------CCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 999999999988754 33332 3557799999986 45 4788999999999998754
No 26
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.97 E-value=5.4e-29 Score=273.99 Aligned_cols=263 Identities=11% Similarity=0.059 Sum_probs=185.7
Q ss_pred cccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCCcc
Q 003087 9 KTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANGEE 87 (849)
Q Consensus 9 ~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~~ 87 (849)
+...|.+++|||||++||+|+ |++|+||+...+ .....+.. +...|.+++|||||++||+|+.||+|++||+.++.
T Consensus 75 h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~--~~~~~~~~-h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~ 151 (343)
T 2xzm_R 75 HNHFVSDLALSQENCFAISSSWDKTLRLWDLRTG--TTYKRFVG-HQSEVYSVAFSPDNRQILSAGAEREIKLWNILGEC 151 (343)
T ss_dssp CSSCEEEEEECSSTTEEEEEETTSEEEEEETTSS--CEEEEEEC-CCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCE
T ss_pred CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC--cEEEEEcC-CCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCc
Confidence 447899999999999999998 689999998653 33444432 36789999999999999999999999999998765
Q ss_pred ceecccccccccccEEEEEecCCcccc---cccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceE
Q 003087 88 ITRFTNKHLKVSLPIIGLIAQDETDVQ---RSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVI 164 (849)
Q Consensus 88 ~~~l~~~~~~~~~~V~~l~fs~~~~~~---~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~ 164 (849)
....... ..+...|.+++|+|+.... ......|++++.||+|++||.. .... .++. .|...|+
T Consensus 152 ~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~-----------~~~~-~h~~~v~ 217 (343)
T 2xzm_R 152 KFSSAEK-ENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-FQIR-----------YTFK-AHESNVN 217 (343)
T ss_dssp EEECCTT-TSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-TEEE-----------EEEE-CCSSCEE
T ss_pred eeeeecc-cCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC-Ccee-----------EEEc-Cccccce
Confidence 4443211 1234579999999854211 1111358888999999999943 2211 1334 3456799
Q ss_pred EEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEE
Q 003087 165 CTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFV 244 (849)
Q Consensus 165 svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~L 244 (849)
+++|||||++||+||.|+ .|++|++...... .. .+ . +...|.+++|||+|++|
T Consensus 218 ~~~~s~~g~~l~sgs~dg-------------~v~iwd~~~~~~~--~~------~~-~-----~~~~v~~v~~sp~~~~l 270 (343)
T 2xzm_R 218 HLSISPNGKYIATGGKDK-------------KLLIWDILNLTYP--QR------EF-D-----AGSTINQIAFNPKLQWV 270 (343)
T ss_dssp EEEECTTSSEEEEEETTC-------------EEEEEESSCCSSC--SE------EE-E-----CSSCEEEEEECSSSCEE
T ss_pred EEEECCCCCEEEEEcCCC-------------eEEEEECCCCccc--ce------ee-c-----CCCcEEEEEECCCCCEE
Confidence 999999999999999997 3899998442111 10 01 0 23469999999999998
Q ss_pred EEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EEEEEeCCcEEEEEecCCc
Q 003087 245 ATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LILARKSSIITMIDVLSGL 322 (849)
Q Consensus 245 As~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~a~~dgti~lwdl~~~~ 322 (849)
|+ +.|+.|+||++.+... ........ .+... .. ...+|...|.+++|+|||. |++|+.||+|++|++.++.
T Consensus 271 a~-~~d~~v~iw~~~~~~~-~~~~~~~~---~~~~~-~~-~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g~ 342 (343)
T 2xzm_R 271 AV-GTDQGVKIFNLMTQSK-APVCTIEA---EPITK-AE-GQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETSA 342 (343)
T ss_dssp EE-EESSCEEEEESSSCCS-CSEEECCC---CSGGG-BT-TBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEEE
T ss_pred EE-ECCCCEEEEEeCCCCC-CceEEeec---Ccchh-hh-hhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEccC
Confidence 75 5688999999987643 22111100 00000 00 0023556799999999986 7889999999999998765
No 27
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.97 E-value=1.7e-29 Score=295.65 Aligned_cols=233 Identities=15% Similarity=0.242 Sum_probs=184.7
Q ss_pred cccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCCcc
Q 003087 9 KTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANGEE 87 (849)
Q Consensus 9 ~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~~ 87 (849)
....|.+++|||||++||+++ +++|++|+... .....+.. +...|++++|||||++||+|+.|++|+|||.+|+.
T Consensus 343 ~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~---~~~~~~~~-~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~~ 418 (577)
T 2ymu_A 343 HSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG---QLLQTLTG-HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL 418 (577)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETTC---CEEEEEEC-CSSCEEEEEECTTSSCEEEEETTSEEEEECTTCCE
T ss_pred CCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCC---CEEEEecC-CCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCE
Confidence 346799999999999999998 67999999542 33333332 36789999999999999999999999999999887
Q ss_pred ceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEE
Q 003087 88 ITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTD 167 (849)
Q Consensus 88 ~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~sva 167 (849)
+..+..+. ..|.+++|+|++. .+++++.||+|++|+... +... ++. .|...|.+++
T Consensus 419 ~~~~~~~~----~~v~~~~~s~d~~-------~l~~~~~d~~v~~w~~~~-~~~~-----------~~~-~~~~~v~~~~ 474 (577)
T 2ymu_A 419 LQTLTGHS----SSVWGVAFSPDDQ-------TIASASDDKTVKLWNRNG-QLLQ-----------TLT-GHSSSVRGVA 474 (577)
T ss_dssp EEEEECCS----SCEEEEEECTTSS-------EEEEEETTSEEEEEETTS-CEEE-----------EEE-CCSSCEEEEE
T ss_pred EEEecCCC----CCeEEEEECCCCC-------EEEEEcCCCEEEEEECCC-CEEE-----------EEc-CCCCCEEEEE
Confidence 77665443 5799999998654 366779999999999642 2211 233 3456799999
Q ss_pred EcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEE
Q 003087 168 YHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATS 247 (849)
Q Consensus 168 fsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~ 247 (849)
|||||++||+++.|+ .|++|+..+. .+ ....+ |...|.+|+|||||++||++
T Consensus 475 ~spd~~~las~~~d~-------------~i~iw~~~~~----~~---------~~~~~--h~~~v~~l~~s~dg~~l~s~ 526 (577)
T 2ymu_A 475 FSPDGQTIASASDDK-------------TVKLWNRNGQ----LL---------QTLTG--HSSSVRGVAFSPDGQTIASA 526 (577)
T ss_dssp ECTTSCEEEEEETTS-------------EEEEEETTSC----EE---------EEEEC--CSSCEEEEEECTTSSCEEEE
T ss_pred EcCCCCEEEEEeCCC-------------EEEEEcCCCC----EE---------EEEeC--CCCCEEEEEEcCCCCEEEEE
Confidence 999999999999886 3899996542 11 12234 88899999999999999999
Q ss_pred eCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EEEEEeCCcEEEEE
Q 003087 248 DTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LILARKSSIITMID 317 (849)
Q Consensus 248 s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~a~~dgti~lwd 317 (849)
+.||+|+|||.++. + +..+. +|...|.+++|+|||+ |++++.||+|++||
T Consensus 527 ~~dg~v~lwd~~~~-~-~~~~~------------------~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 527 SDDKTVKLWNRNGQ-L-LQTLT------------------GHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp ETTSEEEEECTTSC-E-EEEEE------------------CCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred ECcCEEEEEeCCCC-E-EEEEc------------------CCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 99999999998653 2 33433 3567899999999986 78899999999997
No 28
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.97 E-value=8.1e-29 Score=270.16 Aligned_cols=244 Identities=12% Similarity=0.105 Sum_probs=186.2
Q ss_pred ccccceEEEEEcCCC-CeEEEEe-CCeEEEEecCCCC---CcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEe
Q 003087 8 RKTKKQVSLFISPRG-ERVAVAA-VNQVTILQKDDDY---QEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFK 82 (849)
Q Consensus 8 ~~~~~v~slafSPdG-~~LAsas-~~~i~iw~~~~~~---~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd 82 (849)
.+.+.|.+|+|+|++ ++||+|+ |++|++|+..... +.+...+. .+...|.+++|||||++||+|+.||+|+|||
T Consensus 15 gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~-~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd 93 (319)
T 3frx_A 15 GHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFK-GHSHIVQDCTLTADGAYALSASWDKTLRLWD 93 (319)
T ss_dssp CCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEE-CCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred cccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEe-CCcccEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 466889999999976 8999998 6899999875321 12222232 2367899999999999999999999999999
Q ss_pred cC-CccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCC
Q 003087 83 AN-GEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQ 161 (849)
Q Consensus 83 ~~-g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 161 (849)
+. |+.+..+.+|. ..|.+++|+|++. .+++++.||+|++|++..... .++. +|..
T Consensus 94 ~~~~~~~~~~~~h~----~~v~~~~~~~~~~-------~l~s~s~D~~i~vwd~~~~~~------------~~~~-~h~~ 149 (319)
T 3frx_A 94 VATGETYQRFVGHK----SDVMSVDIDKKAS-------MIISGSRDKTIKVWTIKGQCL------------ATLL-GHND 149 (319)
T ss_dssp TTTTEEEEEEECCS----SCEEEEEECTTSC-------EEEEEETTSCEEEEETTSCEE------------EEEC-CCSS
T ss_pred CCCCCeeEEEccCC----CcEEEEEEcCCCC-------EEEEEeCCCeEEEEECCCCeE------------EEEe-ccCC
Confidence 96 66655555443 5799999988653 366779999999999863221 1233 3456
Q ss_pred ceEEEEEcCC------CceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceE
Q 003087 162 NVICTDYHPE------LSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKV 235 (849)
Q Consensus 162 ~V~svafsPd------g~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~v 235 (849)
.|.+++|+|+ +..|++++.|++ |++|++.... .. ..+.+ |...|.++
T Consensus 150 ~v~~~~~~~~~~~~~~~~~l~s~~~d~~-------------i~~wd~~~~~---~~---------~~~~~--h~~~v~~~ 202 (319)
T 3frx_A 150 WVSQVRVVPNEKADDDSVTIISAGNDKM-------------VKAWNLNQFQ---IE---------ADFIG--HNSNINTL 202 (319)
T ss_dssp CEEEEEECCC------CCEEEEEETTSC-------------EEEEETTTTE---EE---------EEECC--CCSCEEEE
T ss_pred cEEEEEEccCCCCCCCccEEEEEeCCCE-------------EEEEECCcch---hh---------eeecC--CCCcEEEE
Confidence 7999999995 458999999873 8999987531 11 12235 88899999
Q ss_pred EEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCEEEEEEeCCcEEE
Q 003087 236 LISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNILILARKSSIITM 315 (849)
Q Consensus 236 afSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~la~a~~dgti~l 315 (849)
+|||||++|||++.||+|+|||+.+.+. +..+. ....|.+++|+||+.+++++.++.+++
T Consensus 203 ~~sp~g~~l~s~~~dg~i~iwd~~~~~~-~~~~~-------------------~~~~v~~~~~sp~~~~la~~~~~~i~v 262 (319)
T 3frx_A 203 TASPDGTLIASAGKDGEIMLWNLAAKKA-MYTLS-------------------AQDEVFSLAFSPNRYWLAAATATGIKV 262 (319)
T ss_dssp EECTTSSEEEEEETTCEEEEEETTTTEE-EEEEE-------------------CCSCEEEEEECSSSSEEEEEETTEEEE
T ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCcE-EEEec-------------------CCCcEEEEEEcCCCCEEEEEcCCCcEE
Confidence 9999999999999999999999997643 23322 124689999999998777777888999
Q ss_pred EEecCCcc
Q 003087 316 IDVLSGLK 323 (849)
Q Consensus 316 wdl~~~~~ 323 (849)
|++.++..
T Consensus 263 ~~~~~~~~ 270 (319)
T 3frx_A 263 FSLDPQYL 270 (319)
T ss_dssp EEETTEEE
T ss_pred EEeCcCee
Confidence 99987653
No 29
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.4e-29 Score=273.64 Aligned_cols=255 Identities=16% Similarity=0.197 Sum_probs=174.5
Q ss_pred cccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCC-----CcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEe
Q 003087 9 KTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDY-----QEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFK 82 (849)
Q Consensus 9 ~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~-----~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd 82 (849)
+.+.|.+|+|||||++||+|+ |++|+||+..... ..+...+. .+...|.+++|||||++||+|+.||+|++||
T Consensus 57 h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~-~h~~~V~~v~~sp~g~~las~s~D~~v~iwd 135 (330)
T 2hes_X 57 HKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIE-GHENEVKGVAWSNDGYYLATCSRDKSVWIWE 135 (330)
T ss_dssp CCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC-----CEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred ccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEc-CCCCcEEEEEECCCCCEEEEEeCCCEEEEEe
Confidence 557899999999999999998 6899999974311 11222222 2367899999999999999999999999999
Q ss_pred cC-C-c---cceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceecc
Q 003087 83 AN-G-E---EITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRR 157 (849)
Q Consensus 83 ~~-g-~---~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~ 157 (849)
+. + + .+..+..| ...|.+++|+|++. .|++++.||+|++|++.++..... ..+.
T Consensus 136 ~~~~~~~~~~~~~~~~h----~~~v~~v~~~p~~~-------~l~s~s~D~~i~iW~~~~~~~~~~---------~~~~- 194 (330)
T 2hes_X 136 TDESGEEYECISVLQEH----SQDVKHVIWHPSEA-------LLASSSYDDTVRIWKDYDDDWECV---------AVLN- 194 (330)
T ss_dssp CCTTCCCCEEEEEECCC----SSCEEEEEECSSSS-------EEEEEETTSCEEEEEEETTEEEEE---------EEEC-
T ss_pred ccCCCCCeEEEEEeccC----CCceEEEEECCCCC-------EEEEEcCCCeEEEEECCCCCeeEE---------EEcc-
Confidence 93 3 2 22333332 35799999998653 367779999999999876421111 1344
Q ss_pred ccCCceEEEEEcCC--CceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceE
Q 003087 158 QFPQNVICTDYHPE--LSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKV 235 (849)
Q Consensus 158 ~~~~~V~svafsPd--g~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~v 235 (849)
+|...|++++|+|+ +.+|+++|.|++ |++|++.+....... .......+ ... |...|++|
T Consensus 195 ~h~~~v~~~~~~~~~~~~~l~s~s~D~~-------------v~iw~~~~~~~~~~~-~~~~~~~~--~~~--h~~~v~~v 256 (330)
T 2hes_X 195 GHEGTVWSSDFDKTEGVFRLCSGSDDST-------------VRVWKYMGDDEDDQQ-EWVCEAIL--PDV--HKRQVYNV 256 (330)
T ss_dssp CCSSCEEEEEECCSSSSCEEEEEETTSC-------------EEEEEEEEECTTSCE-EEEEEEEC--CSC--CSSCEEEE
T ss_pred CCCCcEEEEEecCCCCeeEEEEEeCCCe-------------EEEEEecCCCccccc-eeEEeeec--ccc--cccceEEE
Confidence 34567999999999 778999999974 899998764211000 00000111 123 77899999
Q ss_pred EEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCC-CcEEEEEec--CCE-EEEEEeCC
Q 003087 236 LISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPIS-DITDFAWWS--DNI-LILARKSS 311 (849)
Q Consensus 236 afSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~-~v~~vaws~--D~~-la~a~~dg 311 (849)
+|||++ +||+++.||+|+||+..++.. ..... . + ..|.. .|.+++|+| |+. |++|+.||
T Consensus 257 ~~s~~~-~l~s~~~dg~v~iw~~~~~~~--~~~~~-~---------~----~~h~~~~v~~v~~~~~~~~~~las~s~Dg 319 (330)
T 2hes_X 257 AWGFNG-LIASVGADGVLAVYEEVDGEW--KVFAK-R---------A----LCHGVYEINVVKWLELNGKTILATGGDDG 319 (330)
T ss_dssp EECTTS-CEEEEETTSCEEEEEEETTEE--EEEEE-E---------S----CTTTTSCEEEEEEC-----CCEEEEETTS
T ss_pred EEcCCC-EEEEEeCCCEEEEEEcCCCce--EEEec-c---------c----cccccceEEEEEEecCCCceEEEEecCCC
Confidence 999776 899999999999999876521 01100 0 0 12334 689999999 554 88999999
Q ss_pred cEEEEEecC
Q 003087 312 IITMIDVLS 320 (849)
Q Consensus 312 ti~lwdl~~ 320 (849)
+|+||++.+
T Consensus 320 ~v~~W~~~~ 328 (330)
T 2hes_X 320 IVNFWSLEK 328 (330)
T ss_dssp EEEEEEC--
T ss_pred cEEEEEecc
Confidence 999999865
No 30
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.97 E-value=1.4e-28 Score=265.61 Aligned_cols=264 Identities=14% Similarity=0.154 Sum_probs=192.7
Q ss_pred ccccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecC-C
Q 003087 8 RKTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKAN-G 85 (849)
Q Consensus 8 ~~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~-g 85 (849)
.+.+.|.+++|||||++||+|+ |+.|+||+..++ .....+. .+...|.+++|||||++||+|+.||+|++||+. +
T Consensus 21 gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~--~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~ 97 (312)
T 4ery_A 21 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG--KFEKTIS-GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 97 (312)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC--CEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred ccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCc--ccchhhc-cCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCC
Confidence 3557899999999999999998 689999997643 2233332 236689999999999999999999999999997 5
Q ss_pred ccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEE
Q 003087 86 EEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVIC 165 (849)
Q Consensus 86 ~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~s 165 (849)
+.+..+..+ ...|.++.|+|++. .+++++.||+|++||+.++..... +. .|...|.+
T Consensus 98 ~~~~~~~~~----~~~v~~~~~~~~~~-------~l~s~~~d~~i~iwd~~~~~~~~~-----------~~-~~~~~v~~ 154 (312)
T 4ery_A 98 KCLKTLKGH----SNYVFCCNFNPQSN-------LIVSGSFDESVRIWDVKTGKCLKT-----------LP-AHSDPVSA 154 (312)
T ss_dssp CEEEEEECC----SSCEEEEEECSSSS-------EEEEEETTSCEEEEETTTCCEEEE-----------EC-CCSSCEEE
T ss_pred cEEEEEcCC----CCCEEEEEEcCCCC-------EEEEEeCCCcEEEEECCCCEEEEE-----------ec-CCCCcEEE
Confidence 555555443 25789999988653 367779999999999987654322 33 34567999
Q ss_pred EEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEE
Q 003087 166 TDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVA 245 (849)
Q Consensus 166 vafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LA 245 (849)
++|+|+|++|++++.|++ |++|++..+.....+ ... |...+..++|+|+|++|+
T Consensus 155 ~~~~~~~~~l~~~~~d~~-------------i~~wd~~~~~~~~~~-----------~~~--~~~~~~~~~~~~~~~~l~ 208 (312)
T 4ery_A 155 VHFNRDGSLIVSSSYDGL-------------CRIWDTASGQCLKTL-----------IDD--DNPPVSFVKFSPNGKYIL 208 (312)
T ss_dssp EEECTTSSEEEEEETTSC-------------EEEEETTTCCEEEEE-----------CCS--SCCCEEEEEECTTSSEEE
T ss_pred EEEcCCCCEEEEEeCCCc-------------EEEEECCCCceeeEE-----------ecc--CCCceEEEEECCCCCEEE
Confidence 999999999999998863 899998764211111 011 456788999999999999
Q ss_pred EEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEe-cCC-EEEEEEeCCcEEEEEecCCcc
Q 003087 246 TSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWW-SDN-ILILARKSSIITMIDVLSGLK 323 (849)
Q Consensus 246 s~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws-~D~-~la~a~~dgti~lwdl~~~~~ 323 (849)
+++.||+|++||+.++++ +..+..+. . ........|+ +++ .+++++.||+|++||+.+++.
T Consensus 209 ~~~~d~~i~iwd~~~~~~-~~~~~~~~---------------~-~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~ 271 (312)
T 4ery_A 209 AATLDNTLKLWDYSKGKC-LKTYTGHK---------------N-EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 271 (312)
T ss_dssp EEETTTEEEEEETTTTEE-EEEECSSC---------------C-SSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCE
T ss_pred EEcCCCeEEEEECCCCcE-EEEEEecC---------------C-ceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchh
Confidence 999999999999998754 33433111 0 0112223444 455 477889999999999998874
Q ss_pred ccccCCCCCCeEEEEEec
Q 003087 324 VKETDPKLRGHVFLLESK 341 (849)
Q Consensus 324 l~~~~~~~~g~~~~Le~~ 341 (849)
+.. -.+|.+.+..+...
T Consensus 272 ~~~-~~~h~~~v~~~~~~ 288 (312)
T 4ery_A 272 VQK-LQGHTDVVISTACH 288 (312)
T ss_dssp EEE-ECCCSSCEEEEEEC
T ss_pred hhh-hhccCCcEEEEeec
Confidence 431 23455666666553
No 31
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.97 E-value=3e-29 Score=285.43 Aligned_cols=206 Identities=12% Similarity=0.125 Sum_probs=155.4
Q ss_pred cceEEEEEcC-CCCeEEEEe-CCeEEEEecCCCCCcceeeeee-cCCCCEEEEEECC-CCCEEEEEeCCCcEEEEecCCc
Q 003087 11 KKQVSLFISP-RGERVAVAA-VNQVTILQKDDDYQEPCGIFNC-TGLGASIYGAWSE-SHDVLGIVDDTHTVYFFKANGE 86 (849)
Q Consensus 11 ~~v~slafSP-dG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~-~~~~~v~~vafSP-DG~~LAs~~~dgtIrlWd~~g~ 86 (849)
++|++|+|+| ++++||+|+ |++|+||+...+... ..... .|.+.|++|+||| ||++|+||+.||+|+|||+.++
T Consensus 120 ~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~--~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~ 197 (435)
T 4e54_B 120 RRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKP--TFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGN 197 (435)
T ss_dssp SCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCC--EEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSC
T ss_pred CCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCce--eEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCC
Confidence 5699999999 678999998 689999997643222 12222 2367899999999 7999999999999999999877
Q ss_pred cceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEE
Q 003087 87 EITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICT 166 (849)
Q Consensus 87 ~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~sv 166 (849)
.+..+..++ .....+.+++|++++. .|++++.||+|++||+..... .++. .|...|+++
T Consensus 198 ~~~~~~~~~-~~~~~~~~~~~~~~~~-------~l~~g~~dg~i~~wd~~~~~~------------~~~~-~h~~~v~~v 256 (435)
T 4e54_B 198 ILRVFASSD-TINIWFCSLDVSASSR-------MVVTGDNVGNVILLNMDGKEL------------WNLR-MHKKKVTHV 256 (435)
T ss_dssp EEEEEECCS-SCSCCCCCEEEETTTT-------EEEEECSSSBEEEEESSSCBC------------CCSB-CCSSCEEEE
T ss_pred ceeEEeccC-CCCccEEEEEECCCCC-------EEEEEeCCCcEeeeccCccee------------EEEe-cccceEEee
Confidence 655554433 2234577899988654 366679999999999864322 1233 345679999
Q ss_pred EEcCCCc-eEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEE
Q 003087 167 DYHPELS-LLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVA 245 (849)
Q Consensus 167 afsPdg~-lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LA 245 (849)
+|+|+|. +++++|.|++ |++||+........+. ...+ |...|.+|+|||||++||
T Consensus 257 ~~~p~~~~~~~s~s~d~~-------------v~iwd~~~~~~~~~~~---------~~~~--h~~~v~~~~~spdg~~l~ 312 (435)
T 4e54_B 257 ALNPCCDWFLATASVDQT-------------VKIWDLRQVRGKASFL---------YSLP--HRHPVNAACFSPDGARLL 312 (435)
T ss_dssp EECTTCSSEEEEEETTSB-------------CCEEETTTCCSSSCCS---------BCCB--CSSCEEECCBCTTSSEEE
T ss_pred eecCCCceEEEEecCcce-------------eeEEecccccccceEE---------Eeee--ccccccceeECCCCCeeE
Confidence 9999987 6778888863 8999987642211111 1123 888999999999999999
Q ss_pred EEeCCCcEEEEecCCCcc
Q 003087 246 TSDTNGCLYIFEMDKDNF 263 (849)
Q Consensus 246 s~s~Dgtv~LWd~~~~~~ 263 (849)
|++.||+|+|||+.+..+
T Consensus 313 s~~~D~~i~iwd~~~~~~ 330 (435)
T 4e54_B 313 TTDQKSEIRVYSASQWDC 330 (435)
T ss_dssp EEESSSCEEEEESSSSSS
T ss_pred EEcCCCEEEEEECCCCcc
Confidence 999999999999987654
No 32
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.97 E-value=2e-28 Score=264.99 Aligned_cols=241 Identities=12% Similarity=0.074 Sum_probs=181.2
Q ss_pred ccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecC-Ccc
Q 003087 10 TKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKAN-GEE 87 (849)
Q Consensus 10 ~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~-g~~ 87 (849)
...|.+++|+|||++||+|+ |++|++|+...+ .....+.. +...|.+++|+|||++||+|+.||+|+|||+. +..
T Consensus 55 ~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~--~~~~~~~~-h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~ 131 (304)
T 2ynn_A 55 ETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG--EKVVDFEA-HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA 131 (304)
T ss_dssp SSCEEEEEEEGGGTEEEEEETTSEEEEEETTTC--CEEEEEEC-CSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTE
T ss_pred CCcEEEEEEeCCCCEEEEECCCCEEEEEECCCC--cEEEEEeC-CCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcc
Confidence 36799999999999999998 679999997653 33434432 36789999999999999999999999999986 433
Q ss_pred ceecccccccccccEEEEEecC-CcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEE
Q 003087 88 ITRFTNKHLKVSLPIIGLIAQD-ETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICT 166 (849)
Q Consensus 88 ~~~l~~~~~~~~~~V~~l~fs~-~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~sv 166 (849)
+......| ...|.+++|+| ++. .|++++.||+|++||+.++.... .+..++...|..+
T Consensus 132 ~~~~~~~h---~~~v~~v~~~p~~~~-------~l~sgs~D~~v~iwd~~~~~~~~-----------~~~~~~~~~v~~~ 190 (304)
T 2ynn_A 132 LEQTFEGH---EHFVMCVAFNPKDPS-------TFASGCLDRTVKVWSLGQSTPNF-----------TLTTGQERGVNYV 190 (304)
T ss_dssp EEEEECCC---CSCEEEEEECTTCTT-------EEEEEETTSEEEEEETTCSSCSE-----------EEECCCTTCEEEE
T ss_pred hhhhhccc---CCcEEEEEECCCCCC-------EEEEEeCCCeEEEEECCCCCccc-----------eeccCCcCcEEEE
Confidence 33322222 35799999988 332 36777999999999987644321 2333455679999
Q ss_pred EEcC--CCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEE
Q 003087 167 DYHP--ELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFV 244 (849)
Q Consensus 167 afsP--dg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~L 244 (849)
+|+| ++++||++|.|+ +|++|++..+. .+ ....+ |...|..++|+|+|++|
T Consensus 191 ~~~~~~~~~~l~s~s~D~-------------~i~iWd~~~~~---~~---------~~~~~--h~~~v~~~~~~p~~~~l 243 (304)
T 2ynn_A 191 DYYPLPDKPYMITASDDL-------------TIKIWDYQTKS---CV---------ATLEG--HMSNVSFAVFHPTLPII 243 (304)
T ss_dssp EECCSTTCCEEEEEETTS-------------EEEEEETTTTE---EE---------EEEEC--CSSCEEEEEECSSSSEE
T ss_pred EEEEcCCCCEEEEEcCCC-------------eEEEEeCCCCc---cc---------eeeCC--CCCCEEEEEECCCCCEE
Confidence 9987 788999999997 38999987642 11 12235 88899999999999999
Q ss_pred EEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE--EEEEEeCCcEEEEEecC
Q 003087 245 ATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI--LILARKSSIITMIDVLS 320 (849)
Q Consensus 245 As~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~--la~a~~dgti~lwdl~~ 320 (849)
||++.||+|+|||+.+.++ ++.+. .+...++.++|+|++. +++++.++.+.+|++.+
T Consensus 244 ~s~s~Dg~i~iWd~~~~~~-~~~~~------------------~~~~~~~~~~~~~~~~~~~~asg~~~g~~~~~~~~ 302 (304)
T 2ynn_A 244 ISGSEDGTLKIWNSSTYKV-EKTLN------------------VGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGN 302 (304)
T ss_dssp EEEETTSCEEEEETTTCCE-EEEEC------------------CSSSSEEEEEECTTCGGGCEEEEETTEEEEEECC-
T ss_pred EEEcCCCeEEEEECCCCce-eeecc------------------CCCccEEEEEECCCCCceEEEEecCCceEEEEecc
Confidence 9999999999999998754 33332 2345789999999873 34444566677888765
No 33
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.96 E-value=3.4e-28 Score=284.65 Aligned_cols=254 Identities=15% Similarity=0.223 Sum_probs=193.8
Q ss_pred cccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCCcc
Q 003087 9 KTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANGEE 87 (849)
Q Consensus 9 ~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~~ 87 (849)
+.+.|++++|+|||++||+++ |++|++|+... .....+.. +...+.+++|||||++||+|+.||+|++||.+|+.
T Consensus 302 h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~---~~~~~~~~-~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~ 377 (577)
T 2ymu_A 302 HSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG---QHLQTLTG-HSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQL 377 (577)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTS---CEEEEECC-CSSCEEEEEECTTSSEEEEEETTSEEEEEETTCCE
T ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC---CeeEEEeC-CCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCCE
Confidence 457899999999999999998 57999999653 22333322 35689999999999999999999999999999988
Q ss_pred ceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEE
Q 003087 88 ITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTD 167 (849)
Q Consensus 88 ~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~sva 167 (849)
+..+..+. ..|.+++|+|++.. +++++.||+|++|+.. ++.. .++. .|...|.+++
T Consensus 378 ~~~~~~~~----~~v~~~~~s~dg~~-------l~~~~~d~~v~~~~~~-~~~~-----------~~~~-~~~~~v~~~~ 433 (577)
T 2ymu_A 378 LQTLTGHS----SSVRGVAFSPDGQT-------IASASDDKTVKLWNRN-GQLL-----------QTLT-GHSSSVWGVA 433 (577)
T ss_dssp EEEEECCS----SCEEEEEECTTSSC-------EEEEETTSEEEEECTT-CCEE-----------EEEE-CCSSCEEEEE
T ss_pred EEEecCCC----CCeEEEEECCCCCE-------EEEEeCCCEEEEEeCC-CCEE-----------EEec-CCCCCeEEEE
Confidence 77765543 57999999987643 5667899999999953 2221 1233 3456799999
Q ss_pred EcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEE
Q 003087 168 YHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATS 247 (849)
Q Consensus 168 fsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~ 247 (849)
|+||+++||+++.|+ .|++|+..+. .+ ....+ |...|.+++|||||++||++
T Consensus 434 ~s~d~~~l~~~~~d~-------------~v~~w~~~~~----~~---------~~~~~--~~~~v~~~~~spd~~~las~ 485 (577)
T 2ymu_A 434 FSPDDQTIASASDDK-------------TVKLWNRNGQ----LL---------QTLTG--HSSSVRGVAFSPDGQTIASA 485 (577)
T ss_dssp ECTTSSEEEEEETTS-------------EEEEEETTSC----EE---------EEEEC--CSSCEEEEEECTTSCEEEEE
T ss_pred ECCCCCEEEEEcCCC-------------EEEEEECCCC----EE---------EEEcC--CCCCEEEEEEcCCCCEEEEE
Confidence 999999999999887 3899996542 11 11234 77899999999999999999
Q ss_pred eCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EEEEEeCCcEEEEEecCCccccc
Q 003087 248 DTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LILARKSSIITMIDVLSGLKVKE 326 (849)
Q Consensus 248 s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~a~~dgti~lwdl~~~~~l~~ 326 (849)
+.||+|+||+..+. + ++.+. .|...|.+++|+|||. |++++.||+|+|||.+ ++.+.
T Consensus 486 ~~d~~i~iw~~~~~-~-~~~~~------------------~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~-~~~~~- 543 (577)
T 2ymu_A 486 SDDKTVKLWNRNGQ-L-LQTLT------------------GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQ- 543 (577)
T ss_dssp ETTSEEEEEETTSC-E-EEEEE------------------CCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-SCEEE-
T ss_pred eCCCEEEEEcCCCC-E-EEEEe------------------CCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCC-CCEEE-
Confidence 99999999997653 2 33433 3456799999999986 7889999999999964 44222
Q ss_pred cCCCCCCeEEEEEe
Q 003087 327 TDPKLRGHVFLLES 340 (849)
Q Consensus 327 ~~~~~~g~~~~Le~ 340 (849)
.-.+|.+.|..+..
T Consensus 544 ~~~~h~~~v~~~~f 557 (577)
T 2ymu_A 544 TLTGHSSSVWGVAF 557 (577)
T ss_dssp EEECCSSCEEEEEE
T ss_pred EEcCCCCCEEEEEE
Confidence 12245566655554
No 34
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.96 E-value=1.4e-28 Score=274.99 Aligned_cols=260 Identities=12% Similarity=0.141 Sum_probs=185.2
Q ss_pred cccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCC-----cceeeeeecCCCCEEEEEECCC-CCEEEEEeCCCcEEEE
Q 003087 9 KTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQ-----EPCGIFNCTGLGASIYGAWSES-HDVLGIVDDTHTVYFF 81 (849)
Q Consensus 9 ~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~-----~~~~~~~~~~~~~v~~vafSPD-G~~LAs~~~dgtIrlW 81 (849)
+...|.+++|||||++||+|+ |++|+||+...... .....+. .+.+.+.+++|+|+ +..|++|+.|++|++|
T Consensus 107 h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~-gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~w 185 (380)
T 3iz6_a 107 HCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLT-GHKGYASSCQYVPDQETRLITGSGDQTCVLW 185 (380)
T ss_dssp CCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCC-CCSSCCCCCBCCSSSSSCEEEECTTSCEEEE
T ss_pred CCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeecc-CCCcceEEEEEecCCCCEEEEECCCCcEEEE
Confidence 346789999999999999998 68999999753210 0111122 23567889999997 4679999999999999
Q ss_pred ecC-Cccceecccc-cccccccEEEEEecC-CcccccccceeEEEEeCCCcEEEEEecCC-CCcccccccccCCcceecc
Q 003087 82 KAN-GEEITRFTNK-HLKVSLPIIGLIAQD-ETDVQRSCLCSFTVFTSDGFLHQIEISQD-PSASISSASASSSGLTLRR 157 (849)
Q Consensus 82 d~~-g~~~~~l~~~-~~~~~~~V~~l~fs~-~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~-~~~~~~~~~~~~~~~~l~~ 157 (849)
|+. |+.+..+... ...+...|.++.|++ ++. .|++++.||+|++||+... .... ++.
T Consensus 186 d~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-------~l~sgs~D~~v~~wd~~~~~~~~~-----------~~~- 246 (380)
T 3iz6_a 186 DVTTGQRISIFGSEFPSGHTADVLSLSINSLNAN-------MFISGSCDTTVRLWDLRITSRAVR-----------TYH- 246 (380)
T ss_dssp CTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCC-------EEEEEETTSCEEEEETTTTCCCCE-----------EEC-
T ss_pred EcCCCcEEEEeecccCCCCccCeEEEEeecCCCC-------EEEEEECCCeEEEEECCCCCcceE-----------EEC-
Confidence 997 5554433211 112345789999965 332 3677799999999998743 2221 234
Q ss_pred ccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEE
Q 003087 158 QFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLI 237 (849)
Q Consensus 158 ~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vaf 237 (849)
+|...|++++|+|||++||+||.|++ |++||+..+.....+.. .. ..... +...|.+++|
T Consensus 247 ~h~~~v~~v~~~p~~~~l~s~s~D~~-------------i~lwd~~~~~~~~~~~~-~~----~~~~~--~~~~v~~~~~ 306 (380)
T 3iz6_a 247 GHEGDINSVKFFPDGQRFGTGSDDGT-------------CRLFDMRTGHQLQVYNR-EP----DRNDN--ELPIVTSVAF 306 (380)
T ss_dssp CCSSCCCEEEECTTSSEEEEECSSSC-------------EEEEETTTTEEEEEECC-CC----SSSCC--SSCSCSEEEE
T ss_pred CcCCCeEEEEEecCCCeEEEEcCCCe-------------EEEEECCCCcEEEEecc-cc----ccccc--ccCceEEEEE
Confidence 34667999999999999999999974 89999876532111100 00 00011 3346899999
Q ss_pred ccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EEEEEeCCcEEEE
Q 003087 238 SPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LILARKSSIITMI 316 (849)
Q Consensus 238 SPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~a~~dgti~lw 316 (849)
||+|++||+++.||+|++||+.+.+. +..+.. + ...|...|.+++|+|||. |++|+.||+|+||
T Consensus 307 s~~g~~l~~g~~dg~i~vwd~~~~~~-~~~~~~-----------~---~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW 371 (380)
T 3iz6_a 307 SISGRLLFAGYSNGDCYVWDTLLAEM-VLNLGT-----------L---QNSHEGRISCLGLSSDGSALCTGSWDKNLKIW 371 (380)
T ss_dssp CSSSSEEEEECTTSCEEEEETTTCCE-EEEECC-----------S---CSSCCCCCCEEEECSSSSEEEEECTTSCEEEE
T ss_pred CCCCCEEEEEECCCCEEEEECCCCce-EEEEec-----------c---cCCCCCceEEEEECCCCCEEEEeeCCCCEEEE
Confidence 99999999999999999999987643 222210 0 024667899999999985 7889999999999
Q ss_pred EecCCcc
Q 003087 317 DVLSGLK 323 (849)
Q Consensus 317 dl~~~~~ 323 (849)
++.+.++
T Consensus 372 ~~~~~~~ 378 (380)
T 3iz6_a 372 AFSGHRK 378 (380)
T ss_dssp ECCSSSS
T ss_pred ecCCCcc
Confidence 9998764
No 35
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.4e-27 Score=262.15 Aligned_cols=255 Identities=14% Similarity=0.161 Sum_probs=189.7
Q ss_pred cccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCC--CCEEEEEeCCCcEEEEecCC
Q 003087 9 KTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSES--HDVLGIVDDTHTVYFFKANG 85 (849)
Q Consensus 9 ~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPD--G~~LAs~~~dgtIrlWd~~g 85 (849)
+.+.|.+++|||||++||+|+ |++|+||+...........+. .+...|++++|+|+ |++||+|+.||+|+|||+.+
T Consensus 10 h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 88 (379)
T 3jrp_A 10 HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLT-GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEEN 88 (379)
T ss_dssp CCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEEC-CCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEET
T ss_pred CcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEec-CCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCC
Confidence 557899999999999999997 689999997643222222222 23678999999988 99999999999999999974
Q ss_pred c---cceecccccccccccEEEEEecCC--cccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccC
Q 003087 86 E---EITRFTNKHLKVSLPIIGLIAQDE--TDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFP 160 (849)
Q Consensus 86 ~---~~~~l~~~~~~~~~~V~~l~fs~~--~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~ 160 (849)
. .+..+..+ ...|.+++|+|+ +. .|++++.||+|++|++..+..... ..+. .+.
T Consensus 89 ~~~~~~~~~~~~----~~~v~~~~~~~~~~~~-------~l~~~~~d~~i~v~d~~~~~~~~~---------~~~~-~~~ 147 (379)
T 3jrp_A 89 GRWSQIAVHAVH----SASVNSVQWAPHEYGP-------LLLVASSDGKVSVVEFKENGTTSP---------IIID-AHA 147 (379)
T ss_dssp TEEEEEEEECCC----SSCEEEEEECCGGGCS-------EEEEEETTSEEEEEECCTTSCCCE---------EEEE-CCT
T ss_pred CceeEeeeecCC----CcceEEEEeCCCCCCC-------EEEEecCCCcEEEEecCCCCceee---------EEec-CCC
Confidence 4 33333322 357999999886 32 367789999999999987643222 1233 345
Q ss_pred CceEEEEEcC-------------CCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCc
Q 003087 161 QNVICTDYHP-------------ELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHE 227 (849)
Q Consensus 161 ~~V~svafsP-------------dg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~ 227 (849)
..|.+++|+| +|++|++++.|++ |++|++..+.....+ .....+
T Consensus 148 ~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~-------------i~i~d~~~~~~~~~~--------~~~~~~-- 204 (379)
T 3jrp_A 148 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNL-------------VKIWKYNSDAQTYVL--------ESTLEG-- 204 (379)
T ss_dssp TCEEEEEECCCC----------CTTCEEEEEETTSC-------------EEEEEEETTTTEEEE--------EEEECC--
T ss_pred CceEEEEEcCccccccccccCCCCCCEEEEEeCCCe-------------EEEEEecCCCcceee--------EEEEec--
Confidence 6799999999 7999999998863 899999764211111 112234
Q ss_pred cccccceEEEccC---CCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-
Q 003087 228 VQLAHPKVLISPQ---GKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI- 303 (849)
Q Consensus 228 h~~~V~~vafSPD---G~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~- 303 (849)
|...|.+++|||| |++||+++.||+|+|||+.+..... .... +. ...+...|.+++|+||+.
T Consensus 205 h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~-----------~~--~~~~~~~v~~~~~s~~g~~ 270 (379)
T 3jrp_A 205 HSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPW-KKTL-----------LK--EEKFPDVLWRASWSLSGNV 270 (379)
T ss_dssp CSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCC-EEEE-----------SS--SSCCSSCEEEEEECSSSCC
T ss_pred ccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccc-eeee-----------ec--cccCCCcEEEEEEcCCCCE
Confidence 7889999999999 9999999999999999998763210 1010 00 013556799999999986
Q ss_pred EEEEEeCCcEEEEEecCCc
Q 003087 304 LILARKSSIITMIDVLSGL 322 (849)
Q Consensus 304 la~a~~dgti~lwdl~~~~ 322 (849)
+++++.||.|+||++..+.
T Consensus 271 l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 271 LALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp EEEEESSSSEEEEEEEETT
T ss_pred EEEecCCCcEEEEeCCCCC
Confidence 7788999999999998654
No 36
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.96 E-value=2.4e-28 Score=270.12 Aligned_cols=256 Identities=12% Similarity=0.127 Sum_probs=176.7
Q ss_pred cceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCCcc--
Q 003087 11 KKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANGEE-- 87 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~~-- 87 (849)
+.|.+++|||||++||+|+ |++|+||+..++.......+. .+...|.+++|||||++||+|+.||+|+|||+....
T Consensus 12 ~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~ 90 (377)
T 3dwl_C 12 KPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFS-DHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTW 90 (377)
T ss_dssp SCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBC-CCSSCEEEEEECTTTCCEEEEETTSSEEEC------CC
T ss_pred CcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEe-cCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCce
Confidence 5799999999999999996 789999997642102222222 236789999999999999999999999999997433
Q ss_pred --ceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEE
Q 003087 88 --ITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVIC 165 (849)
Q Consensus 88 --~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~s 165 (849)
...+..+ ...|.+++|+|++. .|++++.||+|++|++.++...... ..+.+.|...|.+
T Consensus 91 ~~~~~~~~~----~~~v~~~~~~~~~~-------~l~~~~~d~~i~iwd~~~~~~~~~~--------~~~~~~h~~~v~~ 151 (377)
T 3dwl_C 91 KQTLVLLRL----NRAATFVRWSPNED-------KFAVGSGARVISVCYFEQENDWWVS--------KHLKRPLRSTILS 151 (377)
T ss_dssp CCEEECCCC----SSCEEEEECCTTSS-------CCEEEESSSCEEECCC-----CCCC--------EEECSSCCSCEEE
T ss_pred eeeeEeccc----CCceEEEEECCCCC-------EEEEEecCCeEEEEEECCcccceee--------eEeecccCCCeEE
Confidence 3333332 36799999998654 3566799999999999876531111 2344435678999
Q ss_pred EEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCc-Ccc---cceec--cccceeeccCCCccccccceEEEcc
Q 003087 166 TDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNL-ELE---QLYTT--QIEGLYCEPKGHEVQLAHPKVLISP 239 (849)
Q Consensus 166 vafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~-~~~---~l~~~--~~~~~~~~~~g~~h~~~V~~vafSP 239 (849)
++|+|+|++||+++.|++ |++|++.... +.. ..... ........+ + |...|.+++|||
T Consensus 152 ~~~~~~~~~l~~~~~d~~-------------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~v~~~~~sp 215 (377)
T 3dwl_C 152 LDWHPNNVLLAAGCADRK-------------AYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-P--SGGWVHAVGFSP 215 (377)
T ss_dssp EEECTTSSEEEEEESSSC-------------EEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-C--CSSSEEEEEECT
T ss_pred EEEcCCCCEEEEEeCCCE-------------EEEEEEEecccCCCccccccccccchhhhhhcc-c--CCceEEEEEECC
Confidence 999999999999999873 8999986321 000 00000 001122223 4 888999999999
Q ss_pred CCCEEEEEeCCCcEEEEecCCCccc---ccccccccccccccccccCCCCCCCCCCcEEEEEecCCEEEEEEeCCcEEEE
Q 003087 240 QGKFVATSDTNGCLYIFEMDKDNFS---LSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNILILARKSSIITMI 316 (849)
Q Consensus 240 DG~~LAs~s~Dgtv~LWd~~~~~~~---l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~la~a~~dgti~lw 316 (849)
||++||+++.||+|+|||+.++... +..+. .|...|.+++|+||+.+++++.++.+.+|
T Consensus 216 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~------------------~~~~~v~~~~~s~~~~~l~~~~~~~~~~~ 277 (377)
T 3dwl_C 216 SGNALAYAGHDSSVTIAYPSAPEQPPRALITVK------------------LSQLPLRSLLWANESAIVAAGYNYSPILL 277 (377)
T ss_dssp TSSCEEEEETTTEEC-CEECSTTSCEEECCCEE------------------CSSSCEEEEEEEETTEEEEEESSSSEEEE
T ss_pred CCCEEEEEeCCCcEEEEECCCCCCcceeeEeec------------------CCCCceEEEEEcCCCCEEEEEcCCcEEEE
Confidence 9999999999999999999987431 11211 34567999999999986665566666688
Q ss_pred EecC
Q 003087 317 DVLS 320 (849)
Q Consensus 317 dl~~ 320 (849)
+...
T Consensus 278 ~~~~ 281 (377)
T 3dwl_C 278 QGNE 281 (377)
T ss_dssp CCCC
T ss_pred EeCC
Confidence 7764
No 37
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.96 E-value=4.8e-27 Score=252.86 Aligned_cols=276 Identities=11% Similarity=0.132 Sum_probs=187.3
Q ss_pred ccccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCc--ceeeeeecCCCCEEEEEECC--CCCEEEEEeCCCcEEEEe
Q 003087 8 RKTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQE--PCGIFNCTGLGASIYGAWSE--SHDVLGIVDDTHTVYFFK 82 (849)
Q Consensus 8 ~~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~--~~~~~~~~~~~~v~~vafSP--DG~~LAs~~~dgtIrlWd 82 (849)
.+.+.|.+++|||||++||+|+ |++|+||+...+... ....+. .+...|.+++|+| ||++||+|+.||+|++||
T Consensus 9 gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd 87 (351)
T 3f3f_A 9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWR-AHDSSIVAIDWASPEYGRIIASASYDKTVKLWE 87 (351)
T ss_dssp CCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEE-CCSSCEEEEEECCGGGCSEEEEEETTSCEEEEE
T ss_pred ccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceec-cCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEe
Confidence 4568899999999999999998 689999998643221 122222 2367899999999 799999999999999999
Q ss_pred cCCc----------cceecccccccccccEEEEEecCC--cccccccceeEEEEeCCCcEEEEEecCCCCcccccc--cc
Q 003087 83 ANGE----------EITRFTNKHLKVSLPIIGLIAQDE--TDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSA--SA 148 (849)
Q Consensus 83 ~~g~----------~~~~l~~~~~~~~~~V~~l~fs~~--~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~--~~ 148 (849)
+... .+..+..+ ...|.+++|+|+ +. .+++++.||+|++||+.++.....+.. ..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~-------~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~ 156 (351)
T 3f3f_A 88 EDPDQEECSGRRWNKLCTLNDS----KGSLYSVKFAPAHLGL-------KLACLGNDGILRLYDALEPSDLRSWTLTSEM 156 (351)
T ss_dssp ECTTSCTTSSCSEEEEEEECCC----SSCEEEEEECCGGGCS-------EEEEEETTCEEEEEECSSTTCTTCCEEEEEE
T ss_pred cCCCcccccccCcceeeeeccc----CCceeEEEEcCCCCCc-------EEEEecCCCcEEEecCCChHHhccccccccc
Confidence 9742 23333322 357999999886 32 367779999999999987765433220 00
Q ss_pred cCCcceeccccCCceEEEEEcCC---CceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCC
Q 003087 149 SSSGLTLRRQFPQNVICTDYHPE---LSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKG 225 (849)
Q Consensus 149 ~~~~~~l~~~~~~~V~svafsPd---g~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g 225 (849)
...... ...+...|.+++|+|+ +.++++++.++ .+.+|....+. ... +....+
T Consensus 157 ~~~~~~-~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-------------~~~~~~~~~~~-~~~---------~~~~~~ 212 (351)
T 3f3f_A 157 KVLSIP-PANHLQSDFCLSWCPSRFSPEKLAVSALEQ-------------AIIYQRGKDGK-LHV---------AAKLPG 212 (351)
T ss_dssp ESCSCC-CSSCSCCCEEEEECCCSSSCCEEEEEETTE-------------EEEEEECTTSC-EEE---------EEECCC
T ss_pred cccccc-cCCcccceeEEEeccCCCCCcEEEEecCCC-------------cEEEEccCCCc-eee---------eeecCC
Confidence 000011 1133457999999998 99999998886 25455544321 111 112345
Q ss_pred CccccccceEEEccCC----CEEEEEeCCCcEEEEecCCCcccccccccccccc--------------------------
Q 003087 226 HEVQLAHPKVLISPQG----KFVATSDTNGCLYIFEMDKDNFSLSKFACGERFD-------------------------- 275 (849)
Q Consensus 226 ~~h~~~V~~vafSPDG----~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~-------------------------- 275 (849)
|...|.+++|+|+| ++||+++.||+|++||+.+..... .........
T Consensus 213 --h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (351)
T 3f3f_A 213 --HKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPL-ASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAE 289 (351)
T ss_dssp --CCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------
T ss_pred --CCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCcc-ccCCcccceeccCCCcccccccccccccccceeee
Confidence 88899999999999 899999999999999998642210 000000000
Q ss_pred ---cccccccCCCCCCCCCCcEEEEEecCCE-EEEEEeCCcEEEEEecCCcc
Q 003087 276 ---LQVADSLFDGRTKPISDITDFAWWSDNI-LILARKSSIITMIDVLSGLK 323 (849)
Q Consensus 276 ---~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~a~~dgti~lwdl~~~~~ 323 (849)
......+.. -..|...|.+++|+||+. +++++.||+|+||++.+++.
T Consensus 290 ~~~~~~~~~~~~-~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~ 340 (351)
T 3f3f_A 290 LQSNLQVELLSE-HDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNE 340 (351)
T ss_dssp -CCSEEEEEEEE-ECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSC
T ss_pred ecccccccEEEE-EecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcc
Confidence 000000000 023567899999999986 78899999999999998764
No 38
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.96 E-value=3.5e-27 Score=258.93 Aligned_cols=260 Identities=12% Similarity=0.124 Sum_probs=188.9
Q ss_pred cccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCCcc
Q 003087 9 KTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANGEE 87 (849)
Q Consensus 9 ~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~~ 87 (849)
..+.|.+++|||||++||+++ ++.|+||+...+.......+. .+...|.+++|+|||++||+++.||+|++||+....
T Consensus 7 ~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 85 (372)
T 1k8k_C 7 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELK-EHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRT 85 (372)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEE-CCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTE
T ss_pred cCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeec-CCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCe
Confidence 346799999999999999996 789999997643111333333 236789999999999999999999999999997443
Q ss_pred -ceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEE
Q 003087 88 -ITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICT 166 (849)
Q Consensus 88 -~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~sv 166 (849)
...... ..+...|.+++|+|++. .|++++.||.|++|++..+...... ..+...|...|.++
T Consensus 86 ~~~~~~~--~~~~~~v~~~~~~~~~~-------~l~~~~~d~~v~i~d~~~~~~~~~~--------~~~~~~~~~~i~~~ 148 (372)
T 1k8k_C 86 WKPTLVI--LRINRAARCVRWAPNEK-------KFAVGSGSRVISICYFEQENDWWVC--------KHIKKPIRSTVLSL 148 (372)
T ss_dssp EEEEEEC--CCCSSCEEEEEECTTSS-------EEEEEETTSSEEEEEEETTTTEEEE--------EEECTTCCSCEEEE
T ss_pred eeeeEEe--ecCCCceeEEEECCCCC-------EEEEEeCCCEEEEEEecCCCcceee--------eeeecccCCCeeEE
Confidence 222211 11235799999998653 3677799999999999876531111 11222445679999
Q ss_pred EEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCc----cccee--ccccceeeccCCCccccccceEEEccC
Q 003087 167 DYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLEL----EQLYT--TQIEGLYCEPKGHEVQLAHPKVLISPQ 240 (849)
Q Consensus 167 afsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~----~~l~~--~~~~~~~~~~~g~~h~~~V~~vafSPD 240 (849)
+|+|+|++|++++.|++ |++|++.....- ...+. ......+....+ |...|.+++|+||
T Consensus 149 ~~~~~~~~l~~~~~dg~-------------i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~ 213 (372)
T 1k8k_C 149 DWHPNSVLLAAGSCDFK-------------CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSS--SCGWVHGVCFSAN 213 (372)
T ss_dssp EECTTSSEEEEEETTSC-------------EEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCC--CSSCEEEEEECSS
T ss_pred EEcCCCCEEEEEcCCCC-------------EEEEEcccccccccccccccccccchhhheEecCC--CCCeEEEEEECCC
Confidence 99999999999998863 899997532100 00000 001112223344 7889999999999
Q ss_pred CCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCEEEEEEeCCcEEEEEecC
Q 003087 241 GKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNILILARKSSIITMIDVLS 320 (849)
Q Consensus 241 G~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~la~a~~dgti~lwdl~~ 320 (849)
|++|++++.||+|++||+.+.+. +..+. .+...|.+++|+||+.+++++.||.|++|++.+
T Consensus 214 ~~~l~~~~~d~~i~i~d~~~~~~-~~~~~------------------~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~ 274 (372)
T 1k8k_C 214 GSRVAWVSHDSTVCLADADKKMA-VATLA------------------SETLPLLAVTFITESSLVAAGHDCFPVLFTYDS 274 (372)
T ss_dssp SSEEEEEETTTEEEEEEGGGTTE-EEEEE------------------CSSCCEEEEEEEETTEEEEEETTSSCEEEEEET
T ss_pred CCEEEEEeCCCEEEEEECCCCce-eEEEc------------------cCCCCeEEEEEecCCCEEEEEeCCeEEEEEccC
Confidence 99999999999999999987654 33332 234578999999999877777999999999988
No 39
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.96 E-value=1.6e-27 Score=287.58 Aligned_cols=262 Identities=12% Similarity=0.117 Sum_probs=185.3
Q ss_pred cccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCCcc
Q 003087 9 KTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANGEE 87 (849)
Q Consensus 9 ~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~~ 87 (849)
+.+.|.+|+|||||++||+|+ |++|+||+...+ .....+. .|...|.+++|||||++|+||+.||+|+|||..+..
T Consensus 429 h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~--~~~~~~~-~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~ 505 (694)
T 3dm0_A 429 HSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAG--VSTRRFV-GHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGEC 505 (694)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT--EEEEEEE-CCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCE
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCC--cceeEEe-CCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCc
Confidence 447899999999999999998 689999997643 3333333 246789999999999999999999999999998765
Q ss_pred ceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEE
Q 003087 88 ITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTD 167 (849)
Q Consensus 88 ~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~sva 167 (849)
...+......+...|.+++|+|++.. ..+++++.||+|++||+.++.... ++. +|...|++++
T Consensus 506 ~~~~~~~~~~h~~~v~~~~~~~~~~~-----~~l~s~s~d~~v~vwd~~~~~~~~-----------~~~-~h~~~v~~v~ 568 (694)
T 3dm0_A 506 KYTISEGGEGHRDWVSCVRFSPNTLQ-----PTIVSASWDKTVKVWNLSNCKLRS-----------TLA-GHTGYVSTVA 568 (694)
T ss_dssp EEEECSSTTSCSSCEEEEEECSCSSS-----CEEEEEETTSCEEEEETTTCCEEE-----------EEC-CCSSCEEEEE
T ss_pred ceeeccCCCCCCCcEEEEEEeCCCCc-----ceEEEEeCCCeEEEEECCCCcEEE-----------EEc-CCCCCEEEEE
Confidence 55544332234467999999986421 136777999999999998655432 234 3456799999
Q ss_pred EcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEE
Q 003087 168 YHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATS 247 (849)
Q Consensus 168 fsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~ 247 (849)
|||||++|+++|.|++ |++|++..+. .+.. .. +...|.+++|||||.+|+++
T Consensus 569 ~spdg~~l~sg~~Dg~-------------i~iwd~~~~~---~~~~---------~~---~~~~v~~~~~sp~~~~l~~~ 620 (694)
T 3dm0_A 569 VSPDGSLCASGGKDGV-------------VLLWDLAEGK---KLYS---------LE---ANSVIHALCFSPNRYWLCAA 620 (694)
T ss_dssp ECTTSSEEEEEETTSB-------------CEEEETTTTE---EEEC---------CB---CSSCEEEEEECSSSSEEEEE
T ss_pred EeCCCCEEEEEeCCCe-------------EEEEECCCCc---eEEE---------ec---CCCcEEEEEEcCCCcEEEEE
Confidence 9999999999999973 8999987652 1111 11 33578999999999999876
Q ss_pred eCCCcEEEEecCCCcccccccccccccccccccccCCC-CCCCCCCcEEEEEecCCE-EEEEEeCCcEEEEEecC
Q 003087 248 DTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDG-RTKPISDITDFAWWSDNI-LILARKSSIITMIDVLS 320 (849)
Q Consensus 248 s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~-~~~~~~~v~~vaws~D~~-la~a~~dgti~lwdl~~ 320 (849)
+ |+.|+|||+.+... +..+...........+...+. ...+...+.+++|+|||. |++++.||+|+||++..
T Consensus 621 ~-~~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~~ 693 (694)
T 3dm0_A 621 T-EHGIKIWDLESKSI-VEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR 693 (694)
T ss_dssp E-TTEEEEEETTTTEE-EEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred c-CCCEEEEECCCCCC-hhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEeccC
Confidence 5 56699999998754 333322111000000000000 011223478899999985 77899999999999853
No 40
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.96 E-value=1.3e-26 Score=251.10 Aligned_cols=263 Identities=11% Similarity=0.109 Sum_probs=189.4
Q ss_pred cccceEEEEEcCC-CCeEEEEe-CCeEEEEecCCCCCc---ceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEec
Q 003087 9 KTKKQVSLFISPR-GERVAVAA-VNQVTILQKDDDYQE---PCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKA 83 (849)
Q Consensus 9 ~~~~v~slafSPd-G~~LAsas-~~~i~iw~~~~~~~~---~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~ 83 (849)
+.+.|++|+|||+ |++||||| |++|+||+....... +...+. .+...|.+++|||||++|++|+.||+|++|+.
T Consensus 37 H~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~-~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~ 115 (340)
T 4aow_A 37 HNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR-GHSHFVSDVVISSDGQFALSGSWDGTLRLWDL 115 (340)
T ss_dssp CSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred ccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEe-CCCCCEEEEEECCCCCEEEEEcccccceEEee
Confidence 6689999999998 68999998 689999997643211 122222 23678999999999999999999999999999
Q ss_pred CCccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCce
Q 003087 84 NGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNV 163 (849)
Q Consensus 84 ~g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V 163 (849)
...........+ ...+..+.+++++. .|++++.||.+++|++........ .+. .+...|
T Consensus 116 ~~~~~~~~~~~~---~~~~~~~~~~~~~~-------~l~s~s~d~~~~~~d~~~~~~~~~----------~~~-~~~~~v 174 (340)
T 4aow_A 116 TTGTTTRRFVGH---TKDVLSVAFSSDNR-------QIVSGSRDKTIKLWNTLGVCKYTV----------QDE-SHSEWV 174 (340)
T ss_dssp TTTEEEEEEECC---SSCEEEEEECTTSS-------CEEEEETTSCEEEECTTSCEEEEE----------CSS-SCSSCE
T ss_pred cccceeeeecCC---CCceeEEEEeecCc-------cceeecCCCeEEEEEeCCCceEEE----------Eec-cccCcc
Confidence 754433222222 23466667666432 366779999999999764332111 122 345679
Q ss_pred EEEEEcCCCc--eEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCC
Q 003087 164 ICTDYHPELS--LLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQG 241 (849)
Q Consensus 164 ~svafsPdg~--lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG 241 (849)
.+++|++++. ++++++.|++ |++|++.... .+ ....+ |...|.+|+|||||
T Consensus 175 ~~~~~~~~~~~~~~~s~~~d~~-------------i~i~d~~~~~---~~---------~~~~~--h~~~v~~~~~s~~~ 227 (340)
T 4aow_A 175 SCVRFSPNSSNPIIVSCGWDKL-------------VKVWNLANCK---LK---------TNHIG--HTGYLNTVTVSPDG 227 (340)
T ss_dssp EEEEECSCSSSCEEEEEETTSC-------------EEEEETTTTE---EE---------EEECC--CSSCEEEEEECTTS
T ss_pred cceEEccCCCCcEEEEEcCCCE-------------EEEEECCCCc---ee---------eEecC--CCCcEEEEEECCCC
Confidence 9999998864 6778888863 8999987642 11 12234 88899999999999
Q ss_pred CEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCEEEEEEeCCcEEEEEecCC
Q 003087 242 KFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNILILARKSSIITMIDVLSG 321 (849)
Q Consensus 242 ~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~la~a~~dgti~lwdl~~~ 321 (849)
++||+++.||+|+|||+.+.+. +..+. +...|..++|+|++.+++++.||+|+|||+.++
T Consensus 228 ~~l~s~s~Dg~i~iwd~~~~~~-~~~~~-------------------~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~ 287 (340)
T 4aow_A 228 SLCASGGKDGQAMLWDLNEGKH-LYTLD-------------------GGDIINALCFSPNRYWLCAATGPSIKIWDLEGK 287 (340)
T ss_dssp SEEEEEETTCEEEEEETTTTEE-EEEEE-------------------CSSCEEEEEECSSSSEEEEEETTEEEEEETTTT
T ss_pred CEEEEEeCCCeEEEEEeccCce-eeeec-------------------CCceEEeeecCCCCceeeccCCCEEEEEECCCC
Confidence 9999999999999999997643 22222 124688999999999999999999999999887
Q ss_pred ccccc--------cCCCCCCeEEEEEe
Q 003087 322 LKVKE--------TDPKLRGHVFLLES 340 (849)
Q Consensus 322 ~~l~~--------~~~~~~g~~~~Le~ 340 (849)
..+.. ...+|.+.|..+..
T Consensus 288 ~~~~~~~~~~~~~~~~~h~~~v~~l~~ 314 (340)
T 4aow_A 288 IIVDELKQEVISTSSKAEPPQCTSLAW 314 (340)
T ss_dssp EEEEEECCC-------CCCCCEEEEEE
T ss_pred eEEEeccccceeeeccCCCCCEEEEEE
Confidence 64321 11145666666554
No 41
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.96 E-value=3e-27 Score=285.17 Aligned_cols=249 Identities=12% Similarity=0.114 Sum_probs=188.4
Q ss_pred ccccceEEEEEcCCC-CeEEEEe-CCeEEEEecCCCC---CcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEe
Q 003087 8 RKTKKQVSLFISPRG-ERVAVAA-VNQVTILQKDDDY---QEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFK 82 (849)
Q Consensus 8 ~~~~~v~slafSPdG-~~LAsas-~~~i~iw~~~~~~---~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd 82 (849)
.+.+.|++|+|+|++ ++||+|| |++|+||+...+. +.....+. .|...|.+++|||||++|+||+.||+|+|||
T Consensus 380 ~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~-~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd 458 (694)
T 3dm0_A 380 AHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLT-GHSHFVEDVVLSSDGQFALSGSWDGELRLWD 458 (694)
T ss_dssp CCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEE-CCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred cCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 367899999999975 7999998 6899999976431 11112222 2467899999999999999999999999999
Q ss_pred cC-CccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCC
Q 003087 83 AN-GEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQ 161 (849)
Q Consensus 83 ~~-g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 161 (849)
+. |..+.++..|. ..|.+++|+|++. .+++++.||+|++||+.......... ... +|..
T Consensus 459 ~~~~~~~~~~~~h~----~~v~~~~~s~~~~-------~l~s~s~D~~i~iwd~~~~~~~~~~~--------~~~-~h~~ 518 (694)
T 3dm0_A 459 LAAGVSTRRFVGHT----KDVLSVAFSLDNR-------QIVSASRDRTIKLWNTLGECKYTISE--------GGE-GHRD 518 (694)
T ss_dssp TTTTEEEEEEECCS----SCEEEEEECTTSS-------CEEEEETTSCEEEECTTSCEEEEECS--------STT-SCSS
T ss_pred CCCCcceeEEeCCC----CCEEEEEEeCCCC-------EEEEEeCCCEEEEEECCCCcceeecc--------CCC-CCCC
Confidence 97 55555554433 5799999998654 36677999999999975432211110 011 3456
Q ss_pred ceEEEEEcCCC--ceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEcc
Q 003087 162 NVICTDYHPEL--SLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISP 239 (849)
Q Consensus 162 ~V~svafsPdg--~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSP 239 (849)
.|.+++|||++ ..|++++.|++ |++|++..... .....+ |...|.+|+|||
T Consensus 519 ~v~~~~~~~~~~~~~l~s~s~d~~-------------v~vwd~~~~~~------------~~~~~~--h~~~v~~v~~sp 571 (694)
T 3dm0_A 519 WVSCVRFSPNTLQPTIVSASWDKT-------------VKVWNLSNCKL------------RSTLAG--HTGYVSTVAVSP 571 (694)
T ss_dssp CEEEEEECSCSSSCEEEEEETTSC-------------EEEEETTTCCE------------EEEECC--CSSCEEEEEECT
T ss_pred cEEEEEEeCCCCcceEEEEeCCCe-------------EEEEECCCCcE------------EEEEcC--CCCCEEEEEEeC
Confidence 79999999998 57899998873 89999876421 112235 888999999999
Q ss_pred CCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCEEEEEEeCCcEEEEEec
Q 003087 240 QGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNILILARKSSIITMIDVL 319 (849)
Q Consensus 240 DG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~la~a~~dgti~lwdl~ 319 (849)
||++|||++.||+|+|||+.++++ +..+. +...|.+++|+||+.+++++.++.|+|||+.
T Consensus 572 dg~~l~sg~~Dg~i~iwd~~~~~~-~~~~~-------------------~~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~ 631 (694)
T 3dm0_A 572 DGSLCASGGKDGVVLLWDLAEGKK-LYSLE-------------------ANSVIHALCFSPNRYWLCAATEHGIKIWDLE 631 (694)
T ss_dssp TSSEEEEEETTSBCEEEETTTTEE-EECCB-------------------CSSCEEEEEECSSSSEEEEEETTEEEEEETT
T ss_pred CCCEEEEEeCCCeEEEEECCCCce-EEEec-------------------CCCcEEEEEEcCCCcEEEEEcCCCEEEEECC
Confidence 999999999999999999988754 22221 1245889999999988888889999999999
Q ss_pred CCccc
Q 003087 320 SGLKV 324 (849)
Q Consensus 320 ~~~~l 324 (849)
+++.+
T Consensus 632 ~~~~~ 636 (694)
T 3dm0_A 632 SKSIV 636 (694)
T ss_dssp TTEEE
T ss_pred CCCCh
Confidence 88744
No 42
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.96 E-value=8.8e-27 Score=251.38 Aligned_cols=246 Identities=11% Similarity=0.096 Sum_probs=187.8
Q ss_pred cccceEEEEEcCCCCeEEEEeCCeEEEEecCCCCC-cceeeeee-cCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCCc
Q 003087 9 KTKKQVSLFISPRGERVAVAAVNQVTILQKDDDYQ-EPCGIFNC-TGLGASIYGAWSESHDVLGIVDDTHTVYFFKANGE 86 (849)
Q Consensus 9 ~~~~v~slafSPdG~~LAsas~~~i~iw~~~~~~~-~~~~~~~~-~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~ 86 (849)
+.+.|.+++|||||++||++++++|+||+...+.. .....+.. .+...|.+++|+|||++|++++.||+|++||+.+.
T Consensus 50 h~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~ 129 (337)
T 1gxr_A 50 HGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAP 129 (337)
T ss_dssp CSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC
T ss_pred CCCceEEEEEecCCcEEEEcCCCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCC
Confidence 44789999999999999999999999999765321 12222221 23678999999999999999999999999999754
Q ss_pred c---ceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCce
Q 003087 87 E---ITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNV 163 (849)
Q Consensus 87 ~---~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V 163 (849)
. ...+.. +...|.+++|+|++. .+++++.||.|++|++.++.... .+. .|...|
T Consensus 130 ~~~~~~~~~~----~~~~i~~~~~~~~~~-------~l~~~~~dg~v~~~d~~~~~~~~-----------~~~-~~~~~i 186 (337)
T 1gxr_A 130 TPRIKAELTS----SAPACYALAISPDSK-------VCFSCCSDGNIAVWDLHNQTLVR-----------QFQ-GHTDGA 186 (337)
T ss_dssp --EEEEEEEC----SSSCEEEEEECTTSS-------EEEEEETTSCEEEEETTTTEEEE-----------EEC-CCSSCE
T ss_pred Ccceeeeccc----CCCceEEEEECCCCC-------EEEEEeCCCcEEEEeCCCCceee-----------eee-cccCce
Confidence 3 222222 235689999988643 36677899999999998655432 233 345679
Q ss_pred EEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCE
Q 003087 164 ICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKF 243 (849)
Q Consensus 164 ~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~ 243 (849)
.+++|+|+|++|++++.++ .|++|++..+. .+.. + . |...+.+++|||||++
T Consensus 187 ~~~~~~~~~~~l~~~~~dg-------------~i~~~d~~~~~---~~~~------~----~--~~~~v~~~~~s~~~~~ 238 (337)
T 1gxr_A 187 SCIDISNDGTKLWTGGLDN-------------TVRSWDLREGR---QLQQ------H----D--FTSQIFSLGYCPTGEW 238 (337)
T ss_dssp EEEEECTTSSEEEEEETTS-------------EEEEEETTTTE---EEEE------E----E--CSSCEEEEEECTTSSE
T ss_pred EEEEECCCCCEEEEEecCC-------------cEEEEECCCCc---eEee------e----c--CCCceEEEEECCCCCE
Confidence 9999999999999999886 38999987642 1111 1 1 4568999999999999
Q ss_pred EEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EEEEEeCCcEEEEEecCCc
Q 003087 244 VATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LILARKSSIITMIDVLSGL 322 (849)
Q Consensus 244 LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~a~~dgti~lwdl~~~~ 322 (849)
||+++.||.|++||+.+... ..+. .+...|.+++|+||+. +++++.||.|++|++.+++
T Consensus 239 l~~~~~~~~i~~~~~~~~~~--~~~~------------------~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~ 298 (337)
T 1gxr_A 239 LAVGMESSNVEVLHVNKPDK--YQLH------------------LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA 298 (337)
T ss_dssp EEEEETTSCEEEEETTSSCE--EEEC------------------CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred EEEEcCCCcEEEEECCCCCe--EEEc------------------CCccceeEEEECCCCCEEEEecCCCcEEEEECCCCe
Confidence 99999999999999987632 1211 2456799999999986 7788999999999999987
Q ss_pred ccc
Q 003087 323 KVK 325 (849)
Q Consensus 323 ~l~ 325 (849)
.+.
T Consensus 299 ~~~ 301 (337)
T 1gxr_A 299 SIF 301 (337)
T ss_dssp EEE
T ss_pred EEE
Confidence 553
No 43
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.96 E-value=2.2e-27 Score=263.63 Aligned_cols=266 Identities=14% Similarity=0.117 Sum_probs=189.7
Q ss_pred cccceEEEEEcCCC-CeEEEEe-CCeEEEEecCCCCCcceeeeee-cCCCCEEEEEECC-CCCEEEEEeCCCcEEEEecC
Q 003087 9 KTKKQVSLFISPRG-ERVAVAA-VNQVTILQKDDDYQEPCGIFNC-TGLGASIYGAWSE-SHDVLGIVDDTHTVYFFKAN 84 (849)
Q Consensus 9 ~~~~v~slafSPdG-~~LAsas-~~~i~iw~~~~~~~~~~~~~~~-~~~~~v~~vafSP-DG~~LAs~~~dgtIrlWd~~ 84 (849)
+.+.|.+++|+||| ++||+|+ |++|+||+.... .....+.. .+...|.+++||| |+++|++|+.||+|++||+.
T Consensus 72 h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~ 149 (383)
T 3ei3_B 72 FDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQ--NKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFS 149 (383)
T ss_dssp CSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTST--TCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETT
T ss_pred CCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCc--ccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECC
Confidence 44789999999999 9999998 689999998753 22223332 2467899999999 88999999999999999999
Q ss_pred CccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceE
Q 003087 85 GEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVI 164 (849)
Q Consensus 85 g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~ 164 (849)
++.+..+..+. .+...|.+++|+|++. .|++++.||+|++||+. +... .++. .|...|.
T Consensus 150 ~~~~~~~~~~~-~~~~~v~~~~~~~~~~-------~l~~~~~d~~i~i~d~~-~~~~-----------~~~~-~h~~~v~ 208 (383)
T 3ei3_B 150 GSVIQVFAKTD-SWDYWYCCVDVSVSRQ-------MLATGDSTGRLLLLGLD-GHEI-----------FKEK-LHKAKVT 208 (383)
T ss_dssp SCEEEEEECCC-CSSCCEEEEEEETTTT-------EEEEEETTSEEEEEETT-SCEE-----------EEEE-CSSSCEE
T ss_pred CCceEEEeccC-CCCCCeEEEEECCCCC-------EEEEECCCCCEEEEECC-CCEE-----------EEec-cCCCcEE
Confidence 87766655433 2346799999998654 36677999999999984 2221 1233 3456799
Q ss_pred EEEEcCCCc-eEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEcc-CCC
Q 003087 165 CTDYHPELS-LLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISP-QGK 242 (849)
Q Consensus 165 svafsPdg~-lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSP-DG~ 242 (849)
+++|+|+|+ +|++++.|+ .|++|++........+. ... + |...|.+++||| ||+
T Consensus 209 ~~~~~~~~~~~l~s~~~d~-------------~i~iwd~~~~~~~~~~~--------~~~-~--~~~~v~~~~~s~~~~~ 264 (383)
T 3ei3_B 209 HAEFNPRCDWLMATSSVDA-------------TVKLWDLRNIKDKNSYI--------AEM-P--HEKPVNAAYFNPTDST 264 (383)
T ss_dssp EEEECSSCTTEEEEEETTS-------------EEEEEEGGGCCSTTCEE--------EEE-E--CSSCEEEEEECTTTSC
T ss_pred EEEECCCCCCEEEEEeCCC-------------EEEEEeCCCCCcccceE--------EEe-c--CCCceEEEEEcCCCCC
Confidence 999999999 899999886 38999997632111111 011 2 778999999999 999
Q ss_pred EEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCEEEEEEeCCcEEEEEecCCc
Q 003087 243 FVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNILILARKSSIITMIDVLSGL 322 (849)
Q Consensus 243 ~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~la~a~~dgti~lwdl~~~~ 322 (849)
+||+++.||+|+|||+.+... +..+..+......-...+... -.....+..++|+||+++ +++.||+|+|||+.+++
T Consensus 265 ~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~s~dg~~-s~s~d~~i~iwd~~~~~ 341 (383)
T 3ei3_B 265 KLLTTDQRNEIRVYSSYDWSK-PDQIIIHPHRQFQHLTPIKAT-WHPMYDLIVAGRYPDDQL-LLNDKRTIDIYDANSGG 341 (383)
T ss_dssp EEEEEESSSEEEEEETTBTTS-CSEEEECCBCCCTTSCCCCCE-ECSSSSEEEEECBCCTTT-CTTCCCCEEEEETTTCC
T ss_pred EEEEEcCCCcEEEEECCCCcc-ccccccccccccccccceEEe-ccCCCCceEEEecCCccc-ccCCCCeEEEEecCCCc
Confidence 999999999999999998754 333332211000000000000 000123455777788777 77899999999999887
Q ss_pred cc
Q 003087 323 KV 324 (849)
Q Consensus 323 ~l 324 (849)
.+
T Consensus 342 ~~ 343 (383)
T 3ei3_B 342 LV 343 (383)
T ss_dssp EE
T ss_pred ee
Confidence 53
No 44
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.95 E-value=6.1e-28 Score=282.35 Aligned_cols=242 Identities=11% Similarity=0.071 Sum_probs=174.5
Q ss_pred cceEEEEEcCCC---------CeEEEEe--------------------CCeEEEEecCCCCCcceeeee-ecCCCCEEEE
Q 003087 11 KKQVSLFISPRG---------ERVAVAA--------------------VNQVTILQKDDDYQEPCGIFN-CTGLGASIYG 60 (849)
Q Consensus 11 ~~v~slafSPdG---------~~LAsas--------------------~~~i~iw~~~~~~~~~~~~~~-~~~~~~v~~v 60 (849)
+.|++|+|+|++ ++||+|+ |++|+||+...+......... .++.+.|.+|
T Consensus 134 ~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v 213 (524)
T 2j04_B 134 GLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDL 213 (524)
T ss_dssp C--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEE
T ss_pred CceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEE
Confidence 467788888887 6777643 458999997643211110111 2235789999
Q ss_pred EECCC------CCEEEEEeCCCcEEEEecCCccce------------ecccccccccccEEEEEecCCcccccccceeEE
Q 003087 61 AWSES------HDVLGIVDDTHTVYFFKANGEEIT------------RFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFT 122 (849)
Q Consensus 61 afSPD------G~~LAs~~~dgtIrlWd~~g~~~~------------~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~ 122 (849)
+|||+ |++||+|+.||+|+|||+.+.... .+.+ +...|.+++|+++. .|+
T Consensus 214 ~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~----h~~~v~sv~~s~~~--------~la 281 (524)
T 2j04_B 214 KWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSL----ADSLITTFDFLSPT--------TVV 281 (524)
T ss_dssp EECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECC----TTTCEEEEEESSSS--------EEE
T ss_pred EECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEc----CCCCEEEEEecCCC--------eEE
Confidence 99997 689999999999999999743211 2222 23579999998642 377
Q ss_pred EEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEE--EEcCCC-ceEEEEecCCCCccccCCCCCCceeeE
Q 003087 123 VFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICT--DYHPEL-SLLSVVSNTDTSSLTSSGNSGPCCISL 199 (849)
Q Consensus 123 ~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~sv--afsPdg-~lLas~g~d~t~~~~~~~~~G~~~I~l 199 (849)
+++.||+|++||+.++.... ..+. .|...|++| +|+|+| ++||++|.|+| |++
T Consensus 282 sgs~DgtV~lWD~~~~~~~~----------~~~~-~H~~~V~sv~~~~s~~g~~~laS~S~D~t-------------vkl 337 (524)
T 2j04_B 282 CGFKNGFVAEFDLTDPEVPS----------FYDQ-VHDSYILSVSTAYSDFEDTVVSTVAVDGY-------------FYI 337 (524)
T ss_dssp EEETTSEEEEEETTBCSSCS----------EEEE-CSSSCEEEEEEECCTTSCCEEEEEETTSE-------------EEE
T ss_pred EEeCCCEEEEEECCCCCCce----------EEee-cccccEEEEEEEcCCCCCeEEEEeccCCe-------------EEE
Confidence 78999999999998654321 1234 346679999 689998 89999999974 899
Q ss_pred EEecCCcCcccceeccccceeeccCCCccc--cccceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccc
Q 003087 200 WRRCHNLELEQLYTTQIEGLYCEPKGHEVQ--LAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQ 277 (849)
Q Consensus 200 W~~~~~~~~~~l~~~~~~~~~~~~~g~~h~--~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~ 277 (849)
||+....... .+. + |. ..|.+|+|||||+.+|+++.|++|+|||+.+..+ +..+.
T Consensus 338 WD~~~~~~~~---------~~~---~--~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~-~~~l~-------- 394 (524)
T 2j04_B 338 FNPKDIATTK---------TTV---S--RFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFA-VHPLV-------- 394 (524)
T ss_dssp ECGGGHHHHC---------EEE---E--ECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTC-CEEEE--------
T ss_pred EECCCCCccc---------ccc---c--ccccCcccceEeCCCcCeEEEeCCCCcEEEEECccccc-ceeee--------
Confidence 9987642111 111 1 33 2588999999999999999999999999987643 23322
Q ss_pred cccccCCCCCCCCCCcEEEEEecCCE-EEEEEeCCcEEEEEecCC
Q 003087 278 VADSLFDGRTKPISDITDFAWWSDNI-LILARKSSIITMIDVLSG 321 (849)
Q Consensus 278 ~~~~l~~~~~~~~~~v~~vaws~D~~-la~a~~dgti~lwdl~~~ 321 (849)
+|...|.+|+|+|||. |++|+.||+|+|||+..+
T Consensus 395 ----------gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~ 429 (524)
T 2j04_B 395 ----------SRETTITAIGVSRLHPMVLAGSADGSLIITNAARR 429 (524)
T ss_dssp ----------ECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS
T ss_pred ----------cCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh
Confidence 3557899999999986 789999999999998654
No 45
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.1e-27 Score=276.90 Aligned_cols=248 Identities=13% Similarity=0.067 Sum_probs=174.2
Q ss_pred cccc--cceEEEEEcCCCCeEEEEeC-CeEEEEecCCCC---------------------------CcceeeeeecCCCC
Q 003087 7 PRKT--KKQVSLFISPRGERVAVAAV-NQVTILQKDDDY---------------------------QEPCGIFNCTGLGA 56 (849)
Q Consensus 7 ~~~~--~~v~slafSPdG~~LAsas~-~~i~iw~~~~~~---------------------------~~~~~~~~~~~~~~ 56 (849)
+||. .+|.+|+|||||+++|+||+ ++|+ +..... +.....+...+.+.
T Consensus 10 ~~~~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~ 87 (588)
T 2j04_A 10 DRKEFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCY 87 (588)
T ss_dssp CSCCCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCC
T ss_pred cHhHhhccEEEEEECCCCCEEEEEcCCceee--cccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCc
Confidence 4554 89999999999999999985 5663 211100 00000111112567
Q ss_pred EEEEEECCCCCEEEEEeCCCcEEEEecCCccceeccccccc-ccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEe
Q 003087 57 SIYGAWSESHDVLGIVDDTHTVYFFKANGEEITRFTNKHLK-VSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEI 135 (849)
Q Consensus 57 v~~vafSPDG~~LAs~~~dgtIrlWd~~g~~~~~l~~~~~~-~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~ 135 (849)
|.+++|||||++||+++.||+|+|||..+ .+..+. ++.. .+..|.+++||||+.. +++++.||+|++|++
T Consensus 88 V~~vawSPdG~~LAs~s~dg~V~iwd~~~-~l~~l~-~~~~~~~~sv~svafSPDG~~-------LAsgs~DGtVkIWd~ 158 (588)
T 2j04_A 88 PRVCKPSPIDDWMAVLSNNGNVSVFKDNK-MLTNLD-SKGNLSSRTYHCFEWNPIESS-------IVVGNEDGELQFFSI 158 (588)
T ss_dssp EEEEEECSSSSCEEEEETTSCEEEEETTE-EEEECC-CSSCSTTTCEEEEEECSSSSC-------EEEEETTSEEEEEEC
T ss_pred EEEEEECCCCCEEEEEeCCCcEEEEeCCc-eeeecc-CCCccccccEEEEEEcCCCCE-------EEEEcCCCEEEEEEC
Confidence 99999999999999999999999999766 444444 3321 1235999999998764 566799999999999
Q ss_pred cCCCCccc--ccccccCCcceec---cccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCccc
Q 003087 136 SQDPSASI--SSASASSSGLTLR---RQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQ 210 (849)
Q Consensus 136 ~~~~~~~~--~~~~~~~~~~~l~---~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~ 210 (849)
.++..... +. ..++. ++|...|.+++||||| ||++|.|++ |++|++.++...+.
T Consensus 159 ~~~~l~~~~~i~------l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~t-------------VrlWd~~~~~~~~~ 217 (588)
T 2j04_A 159 RKNSENTPEFYF------ESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNS-------------VFSMTVSASSHQPV 217 (588)
T ss_dssp CCCTTTCCCCEE------EEEEECSCTTCCCCEEEEEEETTE--EEEEETTCC-------------EEEECCCSSSSCCC
T ss_pred CCCcccccccee------eeeeecccccccccEEEEEEcCCc--EEEEeCCCe-------------EEEEECCCCccccc
Confidence 87643110 00 01231 2345689999999999 677888863 89999987531100
Q ss_pred ceeccccceeeccCCCccccccceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCC
Q 003087 211 LYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPI 290 (849)
Q Consensus 211 l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~ 290 (849)
. ..+. .+ |...|.+|+|| |+.||+++ +|+|+|||+.++.. ..+. .+|.
T Consensus 218 ~------~tL~--~~--h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~--~~~~-----------------~gh~ 265 (588)
T 2j04_A 218 S------RMIQ--NA--SRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSI--SSLK-----------------TGSL 265 (588)
T ss_dssp E------EEEE--CC--CSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEE--EEEE-----------------CSCC
T ss_pred e------eeec--cc--ccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeE--EEEE-----------------cCCC
Confidence 0 0110 23 77899999999 79999998 79999999998633 1222 1356
Q ss_pred CCcEEEEE--ecCCE-EEEEEeCCcEEEEEec
Q 003087 291 SDITDFAW--WSDNI-LILARKSSIITMIDVL 319 (849)
Q Consensus 291 ~~v~~vaw--s~D~~-la~a~~dgti~lwdl~ 319 (849)
..|.+|+| +||+. +++|..||+ ++|...
T Consensus 266 ~~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 266 ENFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp SCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred ceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 78999999 99985 677888999 999974
No 46
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.95 E-value=2.5e-26 Score=247.78 Aligned_cols=238 Identities=11% Similarity=0.074 Sum_probs=183.5
Q ss_pred cccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecC-Cc
Q 003087 9 KTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKAN-GE 86 (849)
Q Consensus 9 ~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~-g~ 86 (849)
+...|.+++|+|||++||+++ +++|++|+...........+. .+...+.+++|+|||++|++++.||+|++||+. ++
T Consensus 96 ~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~ 174 (337)
T 1gxr_A 96 RDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELT-SSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQT 174 (337)
T ss_dssp TTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEE-CSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred CCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecc-cCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCc
Confidence 457899999999999999997 689999998653211222222 235679999999999999999999999999997 55
Q ss_pred cceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEE
Q 003087 87 EITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICT 166 (849)
Q Consensus 87 ~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~sv 166 (849)
.+..+..+ ...|.+++|+|++. .+++++.||.|++||+.++..... + .+...|.++
T Consensus 175 ~~~~~~~~----~~~i~~~~~~~~~~-------~l~~~~~dg~i~~~d~~~~~~~~~-----------~--~~~~~v~~~ 230 (337)
T 1gxr_A 175 LVRQFQGH----TDGASCIDISNDGT-------KLWTGGLDNTVRSWDLREGRQLQQ-----------H--DFTSQIFSL 230 (337)
T ss_dssp EEEEECCC----SSCEEEEEECTTSS-------EEEEEETTSEEEEEETTTTEEEEE-----------E--ECSSCEEEE
T ss_pred eeeeeecc----cCceEEEEECCCCC-------EEEEEecCCcEEEEECCCCceEee-----------e--cCCCceEEE
Confidence 55555433 25799999988653 366778999999999987654322 1 234569999
Q ss_pred EEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEE
Q 003087 167 DYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVAT 246 (849)
Q Consensus 167 afsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs 246 (849)
+|+|+|++|++++.+++ |++|++.... .. ...+ |...|.+++|||||++|++
T Consensus 231 ~~s~~~~~l~~~~~~~~-------------i~~~~~~~~~----~~---------~~~~--~~~~v~~~~~~~~~~~l~~ 282 (337)
T 1gxr_A 231 GYCPTGEWLAVGMESSN-------------VEVLHVNKPD----KY---------QLHL--HESCVLSLKFAYCGKWFVS 282 (337)
T ss_dssp EECTTSSEEEEEETTSC-------------EEEEETTSSC----EE---------EECC--CSSCEEEEEECTTSSEEEE
T ss_pred EECCCCCEEEEEcCCCc-------------EEEEECCCCC----eE---------EEcC--CccceeEEEECCCCCEEEE
Confidence 99999999999988863 8999987642 11 1123 7789999999999999999
Q ss_pred EeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EEEEEeCCcEEEEEec
Q 003087 247 SDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LILARKSSIITMIDVL 319 (849)
Q Consensus 247 ~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~a~~dgti~lwdl~ 319 (849)
++.||+|++|++.+++. +... .+...+.+++|+||+. +++++.||+|++|++.
T Consensus 283 ~~~dg~i~~~~~~~~~~-~~~~-------------------~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 283 TGKDNLLNAWRTPYGAS-IFQS-------------------KESSSVLSCDISVDDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp EETTSEEEEEETTTCCE-EEEE-------------------ECSSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred ecCCCcEEEEECCCCeE-EEEe-------------------cCCCcEEEEEECCCCCEEEEecCCCeEEEEEEe
Confidence 99999999999998743 2111 1335689999999985 6788999999999974
No 47
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.95 E-value=2.1e-27 Score=264.62 Aligned_cols=204 Identities=16% Similarity=0.138 Sum_probs=149.8
Q ss_pred cceEEEEEcCCCCeEEEEe---CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCCcc
Q 003087 11 KKQVSLFISPRGERVAVAA---VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANGEE 87 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas---~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~~ 87 (849)
..+..|+|||||++||+|+ |++|+||+..+. .+... .++...|.+|+|||||++||+++.++.+.+|..+|+.
T Consensus 134 ~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~--~~~~~--~~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~ 209 (365)
T 4h5i_A 134 DYTKLVYISREGTVAAIASSKVPAIMRIIDPSDL--TEKFE--IETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSC 209 (365)
T ss_dssp CCEEEEEECTTSSCEEEEESCSSCEEEEEETTTT--EEEEE--EECSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCE
T ss_pred cCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCC--cEEEE--eCCCCceEEEEEccCCceEEeccceeEEEEEeccCcc
Confidence 4578999999999998775 478999998653 33322 3345679999999999999999987766666666776
Q ss_pred ceecccccccccccEEEEEecCCcccccccceeEEEEeCCC----cEEEEEecCCCCcccccccccCCcceeccccCCce
Q 003087 88 ITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDG----FLHQIEISQDPSASISSASASSSGLTLRRQFPQNV 163 (849)
Q Consensus 88 ~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg----~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V 163 (849)
+...... .+...|.+++|+|++.. +++++.|+ +++.|++..+...... ...+.+ +...|
T Consensus 210 ~~~~~~~--~~~~~v~~v~fspdg~~-------l~~~s~d~~~~~~i~~~~~~~~~~~~~~-------~~~~~~-~~~~V 272 (365)
T 4h5i_A 210 IARKTDF--DKNWSLSKINFIADDTV-------LIAASLKKGKGIVLTKISIKSGNTSVLR-------SKQVTN-RFKGI 272 (365)
T ss_dssp EEEECCC--CTTEEEEEEEEEETTEE-------EEEEEESSSCCEEEEEEEEETTEEEEEE-------EEEEES-SCSCE
T ss_pred eeeeecC--CCCCCEEEEEEcCCCCE-------EEEEecCCcceeEEeecccccceeccee-------eeeecC-CCCCe
Confidence 5433221 12357899999987643 44456666 6888988754431110 122343 45579
Q ss_pred EEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCE
Q 003087 164 ICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKF 243 (849)
Q Consensus 164 ~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~ 243 (849)
++++|||||++||+|+.|++ |++||+.++. .+.. ...| |...|.+|+|||||++
T Consensus 273 ~~~~~Spdg~~lasgs~D~~-------------V~iwd~~~~~---~~~~--------~~~g--H~~~V~~v~fSpdg~~ 326 (365)
T 4h5i_A 273 TSMDVDMKGELAVLASNDNS-------------IALVKLKDLS---MSKI--------FKQA--HSFAITEVTISPDSTY 326 (365)
T ss_dssp EEEEECTTSCEEEEEETTSC-------------EEEEETTTTE---EEEE--------ETTS--SSSCEEEEEECTTSCE
T ss_pred EeEEECCCCCceEEEcCCCE-------------EEEEECCCCc---EEEE--------ecCc--ccCCEEEEEECCCCCE
Confidence 99999999999999999974 8999987642 1111 1245 8999999999999999
Q ss_pred EEEEeCCCcEEEEecCCC
Q 003087 244 VATSDTNGCLYIFEMDKD 261 (849)
Q Consensus 244 LAs~s~Dgtv~LWd~~~~ 261 (849)
|||+|.||+|+||+++..
T Consensus 327 laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 327 VASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEEEETTSEEEEEECCTT
T ss_pred EEEEeCCCeEEEEEcCCC
Confidence 999999999999999854
No 48
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.6e-26 Score=252.15 Aligned_cols=247 Identities=9% Similarity=0.073 Sum_probs=182.2
Q ss_pred cccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecC-Cc
Q 003087 9 KTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKAN-GE 86 (849)
Q Consensus 9 ~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~-g~ 86 (849)
+.+.|.+++|||||++||+++ ++.|+||+..++ .....+.. +...|.+++|+|||++||+++.||+|++||+. ++
T Consensus 31 h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~--~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 107 (369)
T 3zwl_B 31 HERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNG--ERLGTLDG-HTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQ 107 (369)
T ss_dssp CSSCEEEEEECTTSCEEEEEESSSCEEEEETTTC--CEEEEECC-CSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCC
T ss_pred eeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc--hhhhhhhh-cCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence 558899999999999999997 689999997653 33444332 36789999999999999999999999999997 55
Q ss_pred cceecccccccccccEEEEEecCCccccc---------------------------------------------------
Q 003087 87 EITRFTNKHLKVSLPIIGLIAQDETDVQR--------------------------------------------------- 115 (849)
Q Consensus 87 ~~~~l~~~~~~~~~~V~~l~fs~~~~~~~--------------------------------------------------- 115 (849)
.+..+. + ...|.++.|+|++....
T Consensus 108 ~~~~~~-~----~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (369)
T 3zwl_B 108 CVATWK-S----PVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAG 182 (369)
T ss_dssp EEEEEE-C----SSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEE
T ss_pred EEEEee-c----CCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEE
Confidence 544443 2 24677777776432110
Q ss_pred -ccc-eeEEEEeCCCcEEEEEecCC-CCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCC
Q 003087 116 -SCL-CSFTVFTSDGFLHQIEISQD-PSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNS 192 (849)
Q Consensus 116 -s~~-~~~~~~s~Dg~v~lw~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~ 192 (849)
+.+ ..+++++.||.|++||+.++ ... ..+. .+...|.+++|+|+|++|++++.|+
T Consensus 183 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-----------~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~---------- 240 (369)
T 3zwl_B 183 WSTKGKYIIAGHKDGKISKYDVSNNYEYV-----------DSID-LHEKSISDMQFSPDLTYFITSSRDT---------- 240 (369)
T ss_dssp ECGGGCEEEEEETTSEEEEEETTTTTEEE-----------EEEE-CCSSCEEEEEECTTSSEEEEEETTS----------
T ss_pred EcCCCCEEEEEcCCCEEEEEECCCCcEeE-----------EEEe-cCCCceeEEEECCCCCEEEEecCCc----------
Confidence 111 23556667777777776652 211 1233 3456799999999999999998886
Q ss_pred CCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEEeCCC--------------cEEEEec
Q 003087 193 GPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNG--------------CLYIFEM 258 (849)
Q Consensus 193 G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dg--------------tv~LWd~ 258 (849)
.|++|++.... .+.. +. +...+..++|+|+|+++++++.++ .+++||+
T Consensus 241 ---~i~v~d~~~~~---~~~~------~~------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~ 302 (369)
T 3zwl_B 241 ---NSFLVDVSTLQ---VLKK------YE------TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHK 302 (369)
T ss_dssp ---EEEEEETTTCC---EEEE------EE------CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEET
T ss_pred ---eEEEEECCCCc---eeee------ec------CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEec
Confidence 38999987642 1111 11 345889999999999999999999 8999999
Q ss_pred CCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EEEEEeCCcEEEEEecCCc
Q 003087 259 DKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LILARKSSIITMIDVLSGL 322 (849)
Q Consensus 259 ~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~a~~dgti~lwdl~~~~ 322 (849)
.+.+. +..+. .|...|.+++|+||+. +++++.||+|+||++.++.
T Consensus 303 ~~~~~-~~~~~------------------~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 348 (369)
T 3zwl_B 303 IFEEE-IGRVQ------------------GHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSY 348 (369)
T ss_dssp TTCCE-EEEEE------------------CCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHH
T ss_pred CCCcc-hhhee------------------cccCcEEEEEECCCCCEEEEEcCCCeEEEEECcccc
Confidence 87754 33332 2456799999999985 7788999999999998765
No 49
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.95 E-value=3.2e-27 Score=276.24 Aligned_cols=258 Identities=11% Similarity=0.044 Sum_probs=178.3
Q ss_pred ccceEEEEEcCC------CCeEEEEe-CCeEEEEecCCCCCc---------ceeeeeecCCCCEEEEEECCCCCEEEEEe
Q 003087 10 TKKQVSLFISPR------GERVAVAA-VNQVTILQKDDDYQE---------PCGIFNCTGLGASIYGAWSESHDVLGIVD 73 (849)
Q Consensus 10 ~~~v~slafSPd------G~~LAsas-~~~i~iw~~~~~~~~---------~~~~~~~~~~~~v~~vafSPDG~~LAs~~ 73 (849)
.+.|++|+|+|+ |++||+|+ |++|+||+...+... +...+.. +...|++++|+|++ .||+|+
T Consensus 207 ~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~-h~~~v~sv~~s~~~-~lasgs 284 (524)
T 2j04_B 207 FGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSL-ADSLITTFDFLSPT-TVVCGF 284 (524)
T ss_dssp CCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECC-TTTCEEEEEESSSS-EEEEEE
T ss_pred CCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEc-CCCCEEEEEecCCC-eEEEEe
Confidence 367999999997 68999998 689999998643211 1112221 35789999999975 899999
Q ss_pred CCCcEEEEecC-Cccc-eecccccccccccEEEE--EecCCc-ccccccceeEEEEeCCCcEEEEEecCCCCcccccccc
Q 003087 74 DTHTVYFFKAN-GEEI-TRFTNKHLKVSLPIIGL--IAQDET-DVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASA 148 (849)
Q Consensus 74 ~dgtIrlWd~~-g~~~-~~l~~~~~~~~~~V~~l--~fs~~~-~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~ 148 (849)
.||+|++||+. +... ..+..| ...|.+| +|++++ . .|++++.||+|++||+.++....
T Consensus 285 ~DgtV~lWD~~~~~~~~~~~~~H----~~~V~sv~~~~s~~g~~-------~laS~S~D~tvklWD~~~~~~~~------ 347 (524)
T 2j04_B 285 KNGFVAEFDLTDPEVPSFYDQVH----DSYILSVSTAYSDFEDT-------VVSTVAVDGYFYIFNPKDIATTK------ 347 (524)
T ss_dssp TTSEEEEEETTBCSSCSEEEECS----SSCEEEEEEECCTTSCC-------EEEEEETTSEEEEECGGGHHHHC------
T ss_pred CCCEEEEEECCCCCCceEEeecc----cccEEEEEEEcCCCCCe-------EEEEeccCCeEEEEECCCCCccc------
Confidence 99999999997 4332 233333 3579998 566653 2 26677999999999997654322
Q ss_pred cCCcceeccccCC-ceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCc
Q 003087 149 SSSGLTLRRQFPQ-NVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHE 227 (849)
Q Consensus 149 ~~~~~~l~~~~~~-~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~ 227 (849)
++.++... .|++|+|||+|+.+|+++.|+ +|++|++....... . ..+
T Consensus 348 -----~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~-------------tv~lwd~~~~~~~~---------~---l~g-- 395 (524)
T 2j04_B 348 -----TTVSRFRGSNLVPVVYCPQIYSYIYSDGAS-------------SLRAVPSRAAFAVH---------P---LVS-- 395 (524)
T ss_dssp -----EEEEECSCCSCCCEEEETTTTEEEEECSSS-------------EEEEEETTCTTCCE---------E---EEE--
T ss_pred -----ccccccccCcccceEeCCCcCeEEEeCCCC-------------cEEEEECcccccce---------e---eec--
Confidence 23334332 489999999999999988886 38999987642111 1 123
Q ss_pred cccccceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccc-------------cccccccc---cccc-----cC--C
Q 003087 228 VQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFA-------------CGERFDLQ---VADS-----LF--D 284 (849)
Q Consensus 228 h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~-------------~~~~~~~~---~~~~-----l~--~ 284 (849)
|.+.|++|+|||||++||||+.||+|+||++.... +.... .....+.. ..+. .+ .
T Consensus 396 H~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~--~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g 473 (524)
T 2j04_B 396 RETTITAIGVSRLHPMVLAGSADGSLIITNAARRL--LHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVND 473 (524)
T ss_dssp CSSCEEEEECCSSCCBCEEEETTTEEECCBSCSST--TTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-----
T ss_pred CCCceEEEEeCCCCCeEEEEECCCEEEEEechHhh--ccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCC
Confidence 88899999999999999999999999999986541 22211 00000000 0000 00 0
Q ss_pred C----CCCCCCCcEEEEEecCC----EEEEEEeCCcEEEEEecC
Q 003087 285 G----RTKPISDITDFAWWSDN----ILILARKSSIITMIDVLS 320 (849)
Q Consensus 285 ~----~~~~~~~v~~vaws~D~----~la~a~~dgti~lwdl~~ 320 (849)
. -.+|...|.+|+|+|++ .+|+|+.+|+|+||++..
T Consensus 474 ~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 474 VSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp --------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred cceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence 0 12355679999999996 478889999999999865
No 50
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.95 E-value=8e-27 Score=260.49 Aligned_cols=259 Identities=12% Similarity=0.104 Sum_probs=186.8
Q ss_pred cccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCC--CcceeeeeecCCCCEEEEEECCC-CCEEEEEeCCCcEEEEecC
Q 003087 9 KTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDY--QEPCGIFNCTGLGASIYGAWSES-HDVLGIVDDTHTVYFFKAN 84 (849)
Q Consensus 9 ~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~--~~~~~~~~~~~~~~v~~vafSPD-G~~LAs~~~dgtIrlWd~~ 84 (849)
....|.+++|||||++||+|+ +++|+||+..... ......+. .+...|.+++|+|| +++||+|+.||+|++||+.
T Consensus 66 ~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~ 144 (416)
T 2pm9_A 66 VDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFS-NHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMN 144 (416)
T ss_dssp CSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECC-CSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTT
T ss_pred cCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhcc-CCccceEEEEEcCCCCCEEEEEcCCCeEEEEECC
Confidence 347899999999999999997 6799999976421 11222222 23678999999999 9999999999999999997
Q ss_pred Ccc-------ceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceecc
Q 003087 85 GEE-------ITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRR 157 (849)
Q Consensus 85 g~~-------~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~ 157 (849)
... ...+ .....+...|.+++|+|++. ..|++++.||.|++||+.++.....+. .+ ....
T Consensus 145 ~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~------~~l~~~~~dg~v~iwd~~~~~~~~~~~----~~-~~~~- 211 (416)
T 2pm9_A 145 KCTESPSNYTPLTP-GQSMSSVDEVISLAWNQSLA------HVFASAGSSNFASIWDLKAKKEVIHLS----YT-SPNS- 211 (416)
T ss_dssp TTSSCTTTCCCBCC-CCSCCSSCCCCEEEECSSCT------TEEEEESSSSCEEEEETTTTEEEEEEC----CC-CCSS-
T ss_pred CCcccccccccccc-ccccCCCCCeeEEEeCCCCC------cEEEEEcCCCCEEEEECCCCCcceEEe----cc-cccc-
Confidence 432 2222 11112345789999988621 136677899999999998765432221 00 0000
Q ss_pred ccCCceEEEEEcCCC-ceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccC-CCccccccceE
Q 003087 158 QFPQNVICTDYHPEL-SLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPK-GHEVQLAHPKV 235 (849)
Q Consensus 158 ~~~~~V~svafsPdg-~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~-g~~h~~~V~~v 235 (849)
.+...|.+++|+|+| .++++++.++. ...|++|++..... .+ .... + |...|.++
T Consensus 212 ~~~~~v~~~~~~~~~~~~l~~~~~d~~----------~~~i~~~d~~~~~~--~~---------~~~~~~--~~~~v~~~ 268 (416)
T 2pm9_A 212 GIKQQLSVVEWHPKNSTRVATATGSDN----------DPSILIWDLRNANT--PL---------QTLNQG--HQKGILSL 268 (416)
T ss_dssp CCCCCEEEEEECSSCTTEEEEEECCSS----------SCCCCEEETTSTTS--CS---------BCCCSC--CSSCEEEE
T ss_pred ccCCceEEEEECCCCCCEEEEEECCCC----------CceEEEEeCCCCCC--Cc---------EEeecC--ccCceeEE
Confidence 114579999999998 58888877740 01289999876421 11 1122 4 78899999
Q ss_pred EEcc-CCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCC--EEEEEEeCCc
Q 003087 236 LISP-QGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDN--ILILARKSSI 312 (849)
Q Consensus 236 afSP-DG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~--~la~a~~dgt 312 (849)
+||| ||++||+++.||+|++||+.+.+. +..+. .|...|.+++|+||+ .+++++.||+
T Consensus 269 ~~s~~~~~~l~s~~~dg~v~~wd~~~~~~-~~~~~------------------~~~~~v~~~~~s~~~~~~l~s~~~d~~ 329 (416)
T 2pm9_A 269 DWCHQDEHLLLSSGRDNTVLLWNPESAEQ-LSQFP------------------ARGNWCFKTKFAPEAPDLFACASFDNK 329 (416)
T ss_dssp EECSSCSSCEEEEESSSEEEEECSSSCCE-EEEEE------------------CSSSCCCCEEECTTCTTEEEECCSSSE
T ss_pred EeCCCCCCeEEEEeCCCCEEEeeCCCCcc-ceeec------------------CCCCceEEEEECCCCCCEEEEEecCCc
Confidence 9999 999999999999999999988754 33332 244678899999987 4778899999
Q ss_pred EEEEEecCCcc
Q 003087 313 ITMIDVLSGLK 323 (849)
Q Consensus 313 i~lwdl~~~~~ 323 (849)
|+||++.+++.
T Consensus 330 i~iw~~~~~~~ 340 (416)
T 2pm9_A 330 IEVQTLQNLTN 340 (416)
T ss_dssp EEEEESCCCCC
T ss_pred EEEEEccCCCC
Confidence 99999998764
No 51
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.95 E-value=5.4e-26 Score=245.38 Aligned_cols=240 Identities=10% Similarity=0.119 Sum_probs=178.9
Q ss_pred cccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecC-Cc
Q 003087 9 KTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKAN-GE 86 (849)
Q Consensus 9 ~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~-g~ 86 (849)
+...|.+++|+|||++||+++ |++|+||+...+ .....+.. +...|.+++|+|+|++|++|+.||+|++||+. ++
T Consensus 64 h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~--~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 140 (312)
T 4ery_A 64 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG--KCLKTLKG-HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK 140 (312)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC--CEEEEEEC-CSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCC
T ss_pred CCCceEEEEEcCCCCEEEEECCCCEEEEEECCCC--cEEEEEcC-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCE
Confidence 446799999999999999998 679999997643 33333332 36679999999999999999999999999997 55
Q ss_pred cceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEE
Q 003087 87 EITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICT 166 (849)
Q Consensus 87 ~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~sv 166 (849)
.+..+..+ ..+|.+++|+|++. .|++++.||+|++||+.++..... +..++...|.++
T Consensus 141 ~~~~~~~~----~~~v~~~~~~~~~~-------~l~~~~~d~~i~~wd~~~~~~~~~-----------~~~~~~~~~~~~ 198 (312)
T 4ery_A 141 CLKTLPAH----SDPVSAVHFNRDGS-------LIVSSSYDGLCRIWDTASGQCLKT-----------LIDDDNPPVSFV 198 (312)
T ss_dssp EEEEECCC----SSCEEEEEECTTSS-------EEEEEETTSCEEEEETTTCCEEEE-----------ECCSSCCCEEEE
T ss_pred EEEEecCC----CCcEEEEEEcCCCC-------EEEEEeCCCcEEEEECCCCceeeE-----------EeccCCCceEEE
Confidence 55555443 25799999988653 366779999999999987654322 112334469999
Q ss_pred EEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccc---cceEEEccCCCE
Q 003087 167 DYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLA---HPKVLISPQGKF 243 (849)
Q Consensus 167 afsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~---V~~vafSPDG~~ 243 (849)
+|+|+|++|++++.|+ .|++|++..+.. + . ...+ |... +......|+|++
T Consensus 199 ~~~~~~~~l~~~~~d~-------------~i~iwd~~~~~~---~------~---~~~~--~~~~~~~~~~~~~~~~~~~ 251 (312)
T 4ery_A 199 KFSPNGKYILAATLDN-------------TLKLWDYSKGKC---L------K---TYTG--HKNEKYCIFANFSVTGGKW 251 (312)
T ss_dssp EECTTSSEEEEEETTT-------------EEEEEETTTTEE---E------E---EECS--SCCSSSCCCEEEECSSSCE
T ss_pred EECCCCCEEEEEcCCC-------------eEEEEECCCCcE---E------E---EEEe--cCCceEEEEEEEEeCCCcE
Confidence 9999999999998886 389999876421 1 1 1122 3322 223334478999
Q ss_pred EEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EEEEE--eCCcEEEEEec
Q 003087 244 VATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LILAR--KSSIITMIDVL 319 (849)
Q Consensus 244 LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~a~--~dgti~lwdl~ 319 (849)
||+++.||+|++||+.+.+. +..+. +|...|.+++|+|++. +++++ .||+|++|+..
T Consensus 252 l~sg~~dg~i~vwd~~~~~~-~~~~~------------------~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 252 IVSGSEDNLVYIWNLQTKEI-VQKLQ------------------GHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp EEECCTTSCEEEEETTTCCE-EEEEC------------------CCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred EEEECCCCEEEEEECCCchh-hhhhh------------------ccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 99999999999999987754 33332 3556799999999886 56665 59999999864
No 52
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.95 E-value=9.9e-27 Score=254.00 Aligned_cols=273 Identities=13% Similarity=0.053 Sum_probs=187.2
Q ss_pred cccccceEEEEEcCC----CCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECC-CCCEEEEEeCCCcEEE
Q 003087 7 PRKTKKQVSLFISPR----GERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSE-SHDVLGIVDDTHTVYF 80 (849)
Q Consensus 7 ~~~~~~v~slafSPd----G~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSP-DG~~LAs~~~dgtIrl 80 (849)
+...+.|.+++|+|+ |++||+|+ |++|+||+.... .....+. .+...|.+++|+| +|++||+|+.||+|++
T Consensus 66 ~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~--~~~~~~~-~~~~~i~~~~~~~~~~~~l~s~~~dg~i~i 142 (366)
T 3k26_A 66 ADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM--QCIKHYV-GHGNAINELKFHPRDPNLLLSVSKDHALRL 142 (366)
T ss_dssp SCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTC--CEEEEEE-SCCSCEEEEEECSSCTTEEEEEETTSCEEE
T ss_pred cCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhc--eEeeeec-CCCCcEEEEEECCCCCCEEEEEeCCCeEEE
Confidence 334577999999999 77999997 679999997643 3344443 2467899999999 9999999999999999
Q ss_pred EecC-CccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccc--cc---------
Q 003087 81 FKAN-GEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSA--SA--------- 148 (849)
Q Consensus 81 Wd~~-g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~--~~--------- 148 (849)
||+. ++.+..+.. ...+...|.+++|+|++. .|++++.||.|++||+.++.....+.. .+
T Consensus 143 wd~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~-------~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (366)
T 3k26_A 143 WNIQTDTLVAIFGG-VEGHRDEVLSADYDLLGE-------KIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPF 214 (366)
T ss_dssp EETTTTEEEEEECS-TTSCSSCEEEEEECTTSS-------EEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCC
T ss_pred EEeecCeEEEEecc-cccccCceeEEEECCCCC-------EEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccc
Confidence 9997 555444421 012236799999998653 366779999999999986543221110 00
Q ss_pred -----cCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCc-ccceec-cccceee
Q 003087 149 -----SSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLEL-EQLYTT-QIEGLYC 221 (849)
Q Consensus 149 -----~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~-~~l~~~-~~~~~~~ 221 (849)
....+.....+...|.+++|+ |++|++++.|+ .|++|++...... ..+... .....+.
T Consensus 215 ~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~-------------~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 279 (366)
T 3k26_A 215 ISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCEN-------------AIVCWKPGKMEDDIDKIKPSESNVTILG 279 (366)
T ss_dssp CCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSS-------------EEEEEEESSTTCCGGGCCTTCCCEEEEE
T ss_pred cceeeccCccccccCCcceEEEEEEc--CCEEEEEecCC-------------EEEEEeCCCccccccccccCCcchheec
Confidence 000011111256679999999 77999998886 3899998764221 111000 0001122
Q ss_pred ccCCCccccccceEEEccC--CCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEe
Q 003087 222 EPKGHEVQLAHPKVLISPQ--GKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWW 299 (849)
Q Consensus 222 ~~~g~~h~~~V~~vafSPD--G~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws 299 (849)
...+ |...|.+++|||| |++||+++.||+|++||+.+++. ...... . +.. ..+...|.+++|+
T Consensus 280 ~~~~--~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~-~---------~~~--~~~~~~v~~~~~s 344 (366)
T 3k26_A 280 RFDY--SQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDP-HKAKCT-T---------LTH--HKCGAAIRQTSFS 344 (366)
T ss_dssp EEEC--SSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSG-GGCEEE-E---------ECC--TTCCSCEEEEEEC
T ss_pred cccc--cCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCC-ccccce-E---------Ecc--cccCCceEEEEeC
Confidence 3344 7789999999999 99999999999999999998743 211100 0 000 1225679999999
Q ss_pred cCCE-EEEEEeCCcEEEEEecC
Q 003087 300 SDNI-LILARKSSIITMIDVLS 320 (849)
Q Consensus 300 ~D~~-la~a~~dgti~lwdl~~ 320 (849)
||+. |++++.||+|+|||+.+
T Consensus 345 ~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 345 RDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp TTSSEEEEEETTSEEEEEEC--
T ss_pred CCCCeEEEEeCCCEEEEEEecC
Confidence 9985 77899999999999864
No 53
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.95 E-value=4.6e-26 Score=246.83 Aligned_cols=252 Identities=12% Similarity=0.099 Sum_probs=181.3
Q ss_pred ccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCCccc
Q 003087 10 TKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANGEEI 88 (849)
Q Consensus 10 ~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~~~ 88 (849)
.+.|.+++|||||++||+++ |+.|++|+.... ...... ......+....|+|++++|++|+.||.+++||+.+...
T Consensus 86 ~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~ 162 (340)
T 4aow_A 86 SHFVSDVVISSDGQFALSGSWDGTLRLWDLTTG--TTTRRF-VGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCK 162 (340)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTT--EEEEEE-ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEE
T ss_pred CCCEEEEEECCCCCEEEEEcccccceEEeeccc--ceeeee-cCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCce
Confidence 47899999999999999998 689999997642 111111 22356778999999999999999999999999975443
Q ss_pred eecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEE
Q 003087 89 TRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDY 168 (849)
Q Consensus 89 ~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svaf 168 (849)
..... ..+...|..++|+++.... .+++++.|++|++|++.++..... +. .|...|++++|
T Consensus 163 ~~~~~--~~~~~~v~~~~~~~~~~~~-----~~~s~~~d~~i~i~d~~~~~~~~~-----------~~-~h~~~v~~~~~ 223 (340)
T 4aow_A 163 YTVQD--ESHSEWVSCVRFSPNSSNP-----IIVSCGWDKLVKVWNLANCKLKTN-----------HI-GHTGYLNTVTV 223 (340)
T ss_dssp EEECS--SSCSSCEEEEEECSCSSSC-----EEEEEETTSCEEEEETTTTEEEEE-----------EC-CCSSCEEEEEE
T ss_pred EEEEe--ccccCcccceEEccCCCCc-----EEEEEcCCCEEEEEECCCCceeeE-----------ec-CCCCcEEEEEE
Confidence 32221 1223578889997743211 256678999999999987654322 33 34567999999
Q ss_pred cCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEEe
Q 003087 169 HPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSD 248 (849)
Q Consensus 169 sPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s 248 (849)
+|||++||+|+.|+ .|++|++.... .+.. + . +...|..++|+|++.+++ ++
T Consensus 224 s~~~~~l~s~s~Dg-------------~i~iwd~~~~~---~~~~------~---~---~~~~v~~~~~~~~~~~~~-~~ 274 (340)
T 4aow_A 224 SPDGSLCASGGKDG-------------QAMLWDLNEGK---HLYT------L---D---GGDIINALCFSPNRYWLC-AA 274 (340)
T ss_dssp CTTSSEEEEEETTC-------------EEEEEETTTTE---EEEE------E---E---CSSCEEEEEECSSSSEEE-EE
T ss_pred CCCCCEEEEEeCCC-------------eEEEEEeccCc---eeee------e---c---CCceEEeeecCCCCceee-cc
Confidence 99999999999997 38999987642 1111 1 1 345789999999998776 55
Q ss_pred CCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EEEEEeCCcEEEEEecCCc
Q 003087 249 TNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LILARKSSIITMIDVLSGL 322 (849)
Q Consensus 249 ~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~a~~dgti~lwdl~~~~ 322 (849)
.||+|+|||+.+... +..+.... .......|...|.+++|+|||. |++|+.||+|+|||+.+|+
T Consensus 275 ~d~~i~iwd~~~~~~-~~~~~~~~---------~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 275 TGPSIKIWDLEGKII-VDELKQEV---------ISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp ETTEEEEEETTTTEE-EEEECCC----------------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred CCCEEEEEECCCCeE-EEeccccc---------eeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 799999999997643 22322110 0000124667899999999985 7889999999999999986
No 54
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.95 E-value=4e-26 Score=247.81 Aligned_cols=271 Identities=13% Similarity=0.126 Sum_probs=193.8
Q ss_pred ccccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCc-ceeeeeecCCCCEEEEEECCCCC-EEEEEeCCCcEEEEec-
Q 003087 8 RKTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQE-PCGIFNCTGLGASIYGAWSESHD-VLGIVDDTHTVYFFKA- 83 (849)
Q Consensus 8 ~~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~-~~~~~~~~~~~~v~~vafSPDG~-~LAs~~~dgtIrlWd~- 83 (849)
.+.+.|.+++|||||++||+++ |++|+||+....... +.... ..+...|.+++|+|||+ +|++|+.||+|++||+
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~ 87 (342)
T 1yfq_A 9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQS-LRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLI 87 (342)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEE-EECSSCEEEEEEEESSSEEEEEEETTSCEEEECSS
T ss_pred CCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceee-eecCCceEEEEECCCCCcEEEEEcCCCeEEEEEec
Confidence 4567899999999999999997 689999997653211 11112 23467899999999999 9999999999999999
Q ss_pred CCccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecC---------CCCcccccccccCCcce
Q 003087 84 NGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQ---------DPSASISSASASSSGLT 154 (849)
Q Consensus 84 ~g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~---------~~~~~~~~~~~~~~~~~ 154 (849)
.+.....+... .+...|.+++|+| +. .+++++.||+|++||+.+ +.....
T Consensus 88 ~~~~~~~~~~~--~~~~~v~~l~~~~-~~-------~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~----------- 146 (342)
T 1yfq_A 88 GSPSFQALTNN--EANLGICRICKYG-DD-------KLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNN----------- 146 (342)
T ss_dssp SSSSEEECBSC--CCCSCEEEEEEET-TT-------EEEEEETTSEEEEECHHHHTTBCEEEEESCSSS-----------
T ss_pred cCCceEecccc--CCCCceEEEEeCC-CC-------EEEEEcCCCeEEEEcccccccccccccCCeeeE-----------
Confidence 87665555441 0235799999987 32 367779999999999875 332211
Q ss_pred eccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecC-CcCcccceeccccceeeccCCCccccccc
Q 003087 155 LRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCH-NLELEQLYTTQIEGLYCEPKGHEVQLAHP 233 (849)
Q Consensus 155 l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~-~~~~~~l~~~~~~~~~~~~~g~~h~~~V~ 233 (849)
+. ++..|.+++|+|++ +++++.++ .|++|++.. ........ ..+ |...|.
T Consensus 147 ~~--~~~~v~~~~~~~~~--l~~~~~d~-------------~i~i~d~~~~~~~~~~~~----------~~~--~~~~i~ 197 (342)
T 1yfq_A 147 TK--VKNKIFTMDTNSSR--LIVGMNNS-------------QVQWFRLPLCEDDNGTIE----------ESG--LKYQIR 197 (342)
T ss_dssp SS--SCCCEEEEEECSSE--EEEEESTT-------------EEEEEESSCCTTCCCEEE----------ECS--CSSCEE
T ss_pred Ee--eCCceEEEEecCCc--EEEEeCCC-------------eEEEEECCccccccceee----------ecC--CCCcee
Confidence 22 34579999999999 77888886 389999876 32110000 112 567899
Q ss_pred eEEEcc-CCCEEEEEeCCCcEEEEecCCC-----cccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EEE
Q 003087 234 KVLISP-QGKFVATSDTNGCLYIFEMDKD-----NFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LIL 306 (849)
Q Consensus 234 ~vafSP-DG~~LAs~s~Dgtv~LWd~~~~-----~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~ 306 (849)
+++|+| ||++||+++.||+|+||++... ...+..+..+... . ....+...|.+++|+||+. +++
T Consensus 198 ~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~--------~-~~~~~~~~i~~~~~s~~~~~l~~ 268 (342)
T 1yfq_A 198 DVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLN--------L-KDTNLAYPVNSIEFSPRHKFLYT 268 (342)
T ss_dssp EEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCC--------T-TCCSSCCCEEEEEECTTTCCEEE
T ss_pred EEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeeccccc--------c-cccccceeEEEEEEcCCCCEEEE
Confidence 999999 9999999999999999999865 1112333321100 0 0012445899999999886 788
Q ss_pred EEeCCcEEEEEecCCccccccCCCC-CCeEEEEE
Q 003087 307 ARKSSIITMIDVLSGLKVKETDPKL-RGHVFLLE 339 (849)
Q Consensus 307 a~~dgti~lwdl~~~~~l~~~~~~~-~g~~~~Le 339 (849)
++.||+|++||+.+++.+.. -+.| .+.+..+.
T Consensus 269 ~~~dg~i~vwd~~~~~~~~~-~~~~h~~~v~~~~ 301 (342)
T 1yfq_A 269 AGSDGIISCWNLQTRKKIKN-FAKFNEDSVVKIA 301 (342)
T ss_dssp EETTSCEEEEETTTTEEEEE-CCCCSSSEEEEEE
T ss_pred ecCCceEEEEcCccHhHhhh-hhcccCCCceEec
Confidence 99999999999998875442 2334 55555544
No 55
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.95 E-value=7.9e-26 Score=250.67 Aligned_cols=281 Identities=10% Similarity=0.049 Sum_probs=187.8
Q ss_pred cccceEEEEEcC-CCCeEEEEe-CCeEEEEecCCCCCcceeeee----------ecCCCCEEEEEECC-CCCEEEEEeCC
Q 003087 9 KTKKQVSLFISP-RGERVAVAA-VNQVTILQKDDDYQEPCGIFN----------CTGLGASIYGAWSE-SHDVLGIVDDT 75 (849)
Q Consensus 9 ~~~~v~slafSP-dG~~LAsas-~~~i~iw~~~~~~~~~~~~~~----------~~~~~~v~~vafSP-DG~~LAs~~~d 75 (849)
+.+.|.+++||| ||++||+|+ |++|+||+..+.......... ..+...|.+++|+| ++++|++++.|
T Consensus 42 h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 121 (408)
T 4a11_B 42 HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFD 121 (408)
T ss_dssp CSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETT
T ss_pred cCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCC
Confidence 558999999999 999999998 689999998754222111110 01367899999999 88899999999
Q ss_pred CcEEEEecCCccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCccee
Q 003087 76 HTVYFFKANGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTL 155 (849)
Q Consensus 76 gtIrlWd~~g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l 155 (849)
|+|++||+.+........+ ...+.++.|.+.... ...+++++.||.|++||+.++..... +
T Consensus 122 ~~i~iwd~~~~~~~~~~~~----~~~~~~~~~~~~~~~----~~~~~~~~~~~~v~~~d~~~~~~~~~-----------~ 182 (408)
T 4a11_B 122 KTLKVWDTNTLQTADVFNF----EETVYSHHMSPVSTK----HCLVAVGTRGPKVQLCDLKSGSCSHI-----------L 182 (408)
T ss_dssp SEEEEEETTTTEEEEEEEC----SSCEEEEEECSSCSS----CCEEEEEESSSSEEEEESSSSCCCEE-----------E
T ss_pred CeEEEeeCCCCccceeccC----CCceeeeEeecCCCC----CcEEEEEcCCCeEEEEeCCCcceeee-----------e
Confidence 9999999975433322222 246888888774321 12477789999999999987654322 3
Q ss_pred ccccCCceEEEEEcCCCc-eEEEEecCCCCccccCCCCCCceeeEEEecCCcC-cccceec---cccceeeccCCCcccc
Q 003087 156 RRQFPQNVICTDYHPELS-LLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLE-LEQLYTT---QIEGLYCEPKGHEVQL 230 (849)
Q Consensus 156 ~~~~~~~V~svafsPdg~-lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~-~~~l~~~---~~~~~~~~~~g~~h~~ 230 (849)
. .|...|.+++|+|+|+ +|++++.|++ |++|++..... ...+... ..........+ |..
T Consensus 183 ~-~~~~~v~~~~~~~~~~~ll~~~~~dg~-------------i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 246 (408)
T 4a11_B 183 Q-GHRQEILAVSWSPRYDYILATASADSR-------------VKLWDVRRASGCLITLDQHNGKKSQAVESANTA--HNG 246 (408)
T ss_dssp C-CCCSCEEEEEECSSCTTEEEEEETTSC-------------EEEEETTCSSCCSEECCTTTTCSCCCTTTSSCS--CSS
T ss_pred c-CCCCcEEEEEECCCCCcEEEEEcCCCc-------------EEEEECCCCCcccccccccccccceeecccccc--ccC
Confidence 3 3456799999999999 5888888863 89999865421 1111000 00000011133 788
Q ss_pred ccceEEEccCCCEEEEEeCCCcEEEEecCCCccccccccccccccc--cc-----------------------ccccCCC
Q 003087 231 AHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDL--QV-----------------------ADSLFDG 285 (849)
Q Consensus 231 ~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~--~~-----------------------~~~l~~~ 285 (849)
.|.+++|||||++||+++.||+|++||+.+++. ............ .. .+.-+..
T Consensus 247 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~ 325 (408)
T 4a11_B 247 KVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGEN-TLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGE 325 (408)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTCCB-CCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCC
T ss_pred ceeEEEEcCCCCEEEEecCCCeEEEEECCCCcc-ceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCc
Confidence 999999999999999999999999999997643 111110000000 00 0000000
Q ss_pred ----CCCCCCCcEEEEEecCCE-EEEEEeCCcEEEEEecCCcccc
Q 003087 286 ----RTKPISDITDFAWWSDNI-LILARKSSIITMIDVLSGLKVK 325 (849)
Q Consensus 286 ----~~~~~~~v~~vaws~D~~-la~a~~dgti~lwdl~~~~~l~ 325 (849)
-..|...|.+++|+||+. +++++.||+|+||++.+++.+.
T Consensus 326 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~ 370 (408)
T 4a11_B 326 QITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVP 370 (408)
T ss_dssp EEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-----
T ss_pred ceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccC
Confidence 023667899999999975 7789999999999999987554
No 56
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.95 E-value=1.2e-26 Score=260.01 Aligned_cols=256 Identities=9% Similarity=0.036 Sum_probs=183.3
Q ss_pred cceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCCccce
Q 003087 11 KKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANGEEIT 89 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~~~~ 89 (849)
..+.+++|||||++||+++ +++|++|+.... ..... ...+..+...+|+|||++||+|+.||+|+|||+.+....
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~--~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 132 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIR--DGSKM--LKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQR 132 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSE--ETTTT--SCSCCEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEE
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEeccc--ceeeE--EecCCceEEEEEecCCCEEEEEECCCCEEEEeCCCccee
Confidence 3455899999999999997 789999997532 11111 112344456789999999999999999999999855444
Q ss_pred ecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEc
Q 003087 90 RFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYH 169 (849)
Q Consensus 90 ~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafs 169 (849)
.....| ...|.+++|+|++. .+++++.||+|++||+.++..... +. +|...|.+++|+
T Consensus 133 ~~~~~h---~~~v~~~~~~~~~~-------~l~s~s~d~~i~iwd~~~~~~~~~-----------~~-~h~~~v~~~~~~ 190 (420)
T 3vl1_A 133 EIDQAH---VSEITKLKFFPSGE-------ALISSSQDMQLKIWSVKDGSNPRT-----------LI-GHRATVTDIAII 190 (420)
T ss_dssp EETTSS---SSCEEEEEECTTSS-------EEEEEETTSEEEEEETTTCCCCEE-----------EE-CCSSCEEEEEEE
T ss_pred eecccc---cCccEEEEECCCCC-------EEEEEeCCCeEEEEeCCCCcCceE-----------Ec-CCCCcEEEEEEc
Confidence 443333 35799999998654 366779999999999987665332 33 446679999999
Q ss_pred CCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceec--ccc-----ceeeccC---CCccccccceEEEcc
Q 003087 170 PELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTT--QIE-----GLYCEPK---GHEVQLAHPKVLISP 239 (849)
Q Consensus 170 Pdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~--~~~-----~~~~~~~---g~~h~~~V~~vafSP 239 (849)
|+|++|++++.|++ |++|++..+.....+... ... .+..... ...|...+.+++|||
T Consensus 191 ~~~~~l~s~~~d~~-------------v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 257 (420)
T 3vl1_A 191 DRGRNVLSASLDGT-------------IRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT 257 (420)
T ss_dssp TTTTEEEEEETTSC-------------EEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSC
T ss_pred CCCCEEEEEcCCCc-------------EEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcC
Confidence 99999999999974 888987654211111000 000 0000000 001446788899999
Q ss_pred CCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE--EEEEEeCCcEEEEE
Q 003087 240 QGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI--LILARKSSIITMID 317 (849)
Q Consensus 240 DG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~--la~a~~dgti~lwd 317 (849)
||++||+++.||+|++||+.+.+. +..+. ..+...|.+++|+|++. +++++.||+|++||
T Consensus 258 ~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~-----------------~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd 319 (420)
T 3vl1_A 258 YGKYVIAGHVSGVITVHNVFSKEQ-TIQLP-----------------SKFTCSCNSLTVDGNNANYIYAGYENGMLAQWD 319 (420)
T ss_dssp TTEEEEEEETTSCEEEEETTTCCE-EEEEC-----------------CTTSSCEEEEEECSSCTTEEEEEETTSEEEEEE
T ss_pred CCCEEEEEcCCCeEEEEECCCCce-eEEcc-----------------cccCCCceeEEEeCCCCCEEEEEeCCCeEEEEE
Confidence 999999999999999999987643 22221 13456799999999975 78899999999999
Q ss_pred ecCCcc
Q 003087 318 VLSGLK 323 (849)
Q Consensus 318 l~~~~~ 323 (849)
+.+++.
T Consensus 320 ~~~~~~ 325 (420)
T 3vl1_A 320 LRSPEC 325 (420)
T ss_dssp TTCTTS
T ss_pred cCCCcC
Confidence 998764
No 57
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.95 E-value=5e-27 Score=265.50 Aligned_cols=269 Identities=11% Similarity=0.104 Sum_probs=185.4
Q ss_pred cccceEEEEEcC-CCCeEEEEe-CCeEEEEecCC---CCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEec
Q 003087 9 KTKKQVSLFISP-RGERVAVAA-VNQVTILQKDD---DYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKA 83 (849)
Q Consensus 9 ~~~~v~slafSP-dG~~LAsas-~~~i~iw~~~~---~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~ 83 (849)
+.+.|.+|+||| ||++||+|+ |++|+||+... +. .........+...|.+++|+|||++||+|+.||+|++||+
T Consensus 62 h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~ 140 (437)
T 3gre_A 62 EPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGE-VYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKV 140 (437)
T ss_dssp TTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTC-CCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEE
T ss_pred CCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCc-ccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEe
Confidence 458899999999 999999998 68999999753 21 0111222234678999999999999999999999999998
Q ss_pred ----CCccceecccccccccccEEEEEecCC---cccc-----ccc-ceeEEEEeCCCcEEEEEecCCCCcccccccccC
Q 003087 84 ----NGEEITRFTNKHLKVSLPIIGLIAQDE---TDVQ-----RSC-LCSFTVFTSDGFLHQIEISQDPSASISSASASS 150 (849)
Q Consensus 84 ----~g~~~~~l~~~~~~~~~~V~~l~fs~~---~~~~-----~s~-~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~ 150 (849)
.|+.+.....+ .|..+.|+++ .... .+. ...+++++.||+|++||+.++.....
T Consensus 141 ~~~~~~~~~~~~~~~------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~------- 207 (437)
T 3gre_A 141 NHYQQESEVKFLNCE------CIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQI------- 207 (437)
T ss_dssp EEEEETTEEEEEEEE------EEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEE-------
T ss_pred ccccCCceeeccccc------eeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEE-------
Confidence 35443332221 3455555431 0000 001 23578889999999999987665332
Q ss_pred Ccceeccc-cCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccc
Q 003087 151 SGLTLRRQ-FPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQ 229 (849)
Q Consensus 151 ~~~~l~~~-~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~ 229 (849)
+.++ |...|++++|+|+|++|++|+.|++ |++|++..+. .+.. +. .+ |.
T Consensus 208 ----~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~-------------i~iwd~~~~~---~~~~------~~--~~--~~ 257 (437)
T 3gre_A 208 ----IENSPRHGAVSSICIDEECCVLILGTTRGI-------------IDIWDIRFNV---LIRS------WS--FG--DH 257 (437)
T ss_dssp ----EECCGGGCCEEEEEECTTSCEEEEEETTSC-------------EEEEETTTTE---EEEE------EB--CT--TC
T ss_pred ----EccCCCCCceEEEEECCCCCEEEEEcCCCe-------------EEEEEcCCcc---EEEE------Ee--cC--CC
Confidence 3332 4567999999999999999999973 8999987642 1111 10 02 56
Q ss_pred cccceE----EEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCC----------CCCCCCcEE
Q 003087 230 LAHPKV----LISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGR----------TKPISDITD 295 (849)
Q Consensus 230 ~~V~~v----afSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~----------~~~~~~v~~ 295 (849)
..|.++ +|||||++||+++.||+|+|||+.++++ +..+..+.... ....++|+. ..+...|.+
T Consensus 258 ~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~v~~ 334 (437)
T 3gre_A 258 APITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHC-QYAFINSDEQP--SMEHFLPIEKGLEELNFCGIRSLNALST 334 (437)
T ss_dssp EEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEE-EEEEESSSSCC--CGGGGSCBCSSGGGCCCCCCCSGGGGCC
T ss_pred CceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcE-EEEEEcCCCCC--ccceecccccccccceecccccCCceEE
Confidence 689999 5667899999999999999999997754 34443221000 000122210 125566899
Q ss_pred EEEecCCEEEEEEeCCcEEEEEecCCccc
Q 003087 296 FAWWSDNILILARKSSIITMIDVLSGLKV 324 (849)
Q Consensus 296 vaws~D~~la~a~~dgti~lwdl~~~~~l 324 (849)
++|+++..+++++.||+|++||+.+++.+
T Consensus 335 l~~~~~~~l~s~~~d~~i~~wd~~~~~~~ 363 (437)
T 3gre_A 335 ISVSNDKILLTDEATSSIVMFSLNELSSS 363 (437)
T ss_dssp EEEETTEEEEEEGGGTEEEEEETTCGGGC
T ss_pred EEECCceEEEecCCCCeEEEEECCCcccc
Confidence 99994445788999999999999998754
No 58
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.95 E-value=1.5e-26 Score=261.22 Aligned_cols=279 Identities=12% Similarity=0.169 Sum_probs=181.5
Q ss_pred cccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCC-------c--ceeeeeecCC------------CCEEEEEECCCC
Q 003087 9 KTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQ-------E--PCGIFNCTGL------------GASIYGAWSESH 66 (849)
Q Consensus 9 ~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~-------~--~~~~~~~~~~------------~~v~~vafSPDG 66 (849)
..+.|.+|+|||||++||+|+ |+.|+||+...... . ....+.. +. ..|.+++|+|++
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~-h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQS-HEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEEC-CCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEeccccc-ccccccccccccccCceEEEEEcCCC
Confidence 348899999999999999998 68999999764320 0 1222222 23 679999999999
Q ss_pred --CEEEEEeCCCcEEEEecCCccce----------------------------------------ecccccccccccEEE
Q 003087 67 --DVLGIVDDTHTVYFFKANGEEIT----------------------------------------RFTNKHLKVSLPIIG 104 (849)
Q Consensus 67 --~~LAs~~~dgtIrlWd~~g~~~~----------------------------------------~l~~~~~~~~~~V~~ 104 (849)
..|++++.||+|++||+...... .+.. .+...|.+
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~h~~~v~~ 182 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFAN---AHTYHINS 182 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECS---CCSSCCCE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEecc---CCCcceEE
Confidence 89999999999999998642211 1111 23357889
Q ss_pred EEecCCcccccccceeEEEEeCCCcEEEEEecCC-CCcccccccccCCcceeccccCCceEEEEEcCCC-ceEEEEecCC
Q 003087 105 LIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQD-PSASISSASASSSGLTLRRQFPQNVICTDYHPEL-SLLSVVSNTD 182 (849)
Q Consensus 105 l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg-~lLas~g~d~ 182 (849)
++|+|++. .|+++ .||+|++||+.++ .....+. ....++. .|...|++++|+|+| ++||+++.|+
T Consensus 183 ~~~~~~~~-------~l~s~-~d~~i~iwd~~~~~~~~~~~~----~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~~~dg 249 (447)
T 3dw8_B 183 ISINSDYE-------TYLSA-DDLRINLWHLEITDRSFNIVD----IKPANME-ELTEVITAAEFHPNSCNTFVYSSSKG 249 (447)
T ss_dssp EEECTTSS-------EEEEE-CSSEEEEEETTEEEEEEEEEE----CCCSSGG-GCCCCEEEEEECSSCTTEEEEEETTS
T ss_pred EEEcCCCC-------EEEEe-CCCeEEEEECCCCCceeeeee----ccccccc-ccCcceEEEEECCCCCcEEEEEeCCC
Confidence 99988653 25555 7999999999742 2222111 0111233 345679999999999 9999999987
Q ss_pred CCccccCCCCCCceeeEEEecCCcCccc-ceeccc--c-ceeeccCCCccccccceEEEccCCCEEEEEeCCCcEEEEec
Q 003087 183 TSSLTSSGNSGPCCISLWRRCHNLELEQ-LYTTQI--E-GLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEM 258 (849)
Q Consensus 183 t~~~~~~~~~G~~~I~lW~~~~~~~~~~-l~~~~~--~-~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~ 258 (849)
+ |++|++..+..... +..... . .......+ |...|.+++|||||++||+++. |+|+|||+
T Consensus 250 ~-------------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~ 313 (447)
T 3dw8_B 250 T-------------IRLCDMRASALCDRHSKLFEEPEDPSNRSFFSE--IISSISDVKFSHSGRYMMTRDY-LSVKVWDL 313 (447)
T ss_dssp C-------------EEEEETTTCSSSCTTCEEECCC-----CCHHHH--HTTCEEEEEECTTSSEEEEEES-SEEEEEET
T ss_pred e-------------EEEEECcCCccccceeeEeccCCCccccccccc--cCceEEEEEECCCCCEEEEeeC-CeEEEEeC
Confidence 3 89999876532100 110000 0 00000001 2348999999999999999999 99999999
Q ss_pred CC-CcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EEEEEeCCcEEEEEecCCccc
Q 003087 259 DK-DNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LILARKSSIITMIDVLSGLKV 324 (849)
Q Consensus 259 ~~-~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~a~~dgti~lwdl~~~~~l 324 (849)
.+ .+. +..+..+............+ .....+..++|+||+. |++++.||+|+|||+.+++.+
T Consensus 314 ~~~~~~-~~~~~~~~~~~~~l~~~~~~---~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~ 377 (447)
T 3dw8_B 314 NMENRP-VETYQVHEYLRSKLCSLYEN---DCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDI 377 (447)
T ss_dssp TCCSSC-SCCEESCGGGTTTHHHHHHT---SGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEE
T ss_pred CCCccc-cceeeccccccccccccccc---cccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcce
Confidence 86 433 45554321100000000000 0111234599999985 788999999999999998753
No 59
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.95 E-value=9e-26 Score=242.11 Aligned_cols=248 Identities=13% Similarity=0.100 Sum_probs=171.5
Q ss_pred EEEEEcCCCCeEEEEeCCeEEEEecCCCCCcceeeeeecC-CCCEEEEEECCCCCEEEEEeCCCcEEEEecC-Cccceec
Q 003087 14 VSLFISPRGERVAVAAVNQVTILQKDDDYQEPCGIFNCTG-LGASIYGAWSESHDVLGIVDDTHTVYFFKAN-GEEITRF 91 (849)
Q Consensus 14 ~slafSPdG~~LAsas~~~i~iw~~~~~~~~~~~~~~~~~-~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~-g~~~~~l 91 (849)
..|+|||++ +||+|.|++|+|||..++ +....+..++ ...|++|+|||||++||+|+.||+|+|||+. |+.+..+
T Consensus 29 ~~l~WS~~~-~lAvg~D~tV~iWd~~tg--~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~ 105 (318)
T 4ggc_A 29 NLVDWSSGN-VLAVALDNSVYLWSASSG--DILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM 105 (318)
T ss_dssp BCEEECTTS-EEEEEETTEEEEEETTTC--CEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred eEEEECCCC-EEEEEeCCEEEEEECCCC--CEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEe
Confidence 569999987 899999999999997653 4444454333 5579999999999999999999999999997 5555555
Q ss_pred ccccccccccEEEEEecCCc---------------------------------cccccc-ceeEEEEeCCCcEEEEEecC
Q 003087 92 TNKHLKVSLPIIGLIAQDET---------------------------------DVQRSC-LCSFTVFTSDGFLHQIEISQ 137 (849)
Q Consensus 92 ~~~~~~~~~~V~~l~fs~~~---------------------------------~~~~s~-~~~~~~~s~Dg~v~lw~~~~ 137 (849)
..|.. .+..+.+.+.. ...... ...+++++.||+|++||+.+
T Consensus 106 ~~h~~----~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 181 (318)
T 4ggc_A 106 TSHSA----RVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP 181 (318)
T ss_dssp ECCSS----CEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSC
T ss_pred cCccc----eEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCC
Confidence 44321 12211111100 000111 13477889999999999987
Q ss_pred CCCcccccccccCCcceeccccCCceEEEEEcCCCceEE-EEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccc
Q 003087 138 DPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLS-VVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQI 216 (849)
Q Consensus 138 ~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLa-s~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~ 216 (849)
+....... .... .+...|.+++++|++..++ +++... ..+|++|+...... ...
T Consensus 182 ~~~~~~~~-------~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~-----------~~~i~lwd~~~~~~---~~~--- 236 (318)
T 4ggc_A 182 GEGGWVPL-------QTFT-QHQGAVKAVAWCPWQSNVLATGGGTS-----------DRHIRIWNVCSGAC---LSA--- 236 (318)
T ss_dssp BTTBSCCS-------EEEC-CCCSCEEEEEECTTSTTEEEEEECTT-----------TCEEEEEETTTCCE---EEE---
T ss_pred Ccccccce-------eeec-ccCCceEEEEecCCCCcEEEEEecCC-----------CCEEEEEecccccc---ccc---
Confidence 65432111 1111 3345799999999887554 332221 12589999765421 100
Q ss_pred cceeeccCCCccccccceEEEccCCCEEEEEe--CCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcE
Q 003087 217 EGLYCEPKGHEVQLAHPKVLISPQGKFVATSD--TNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDIT 294 (849)
Q Consensus 217 ~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s--~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~ 294 (849)
.. |...+..+.|+|+++.+++++ .||+|+|||+.++++ +..+. +|...|.
T Consensus 237 -------~~--~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~-~~~l~------------------gH~~~V~ 288 (318)
T 4ggc_A 237 -------VD--AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAK-VAELK------------------GHTSRVL 288 (318)
T ss_dssp -------EE--CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCE-EEEEC------------------CCSSCEE
T ss_pred -------cc--ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcE-EEEEc------------------CCCCCEE
Confidence 01 456789999999999988765 799999999998754 44443 3567899
Q ss_pred EEEEecCCE-EEEEEeCCcEEEEEecCC
Q 003087 295 DFAWWSDNI-LILARKSSIITMIDVLSG 321 (849)
Q Consensus 295 ~vaws~D~~-la~a~~dgti~lwdl~~~ 321 (849)
+++|+|||. |++|+.||+|+|||+...
T Consensus 289 ~l~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 289 SLTMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp EEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred EEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 999999985 789999999999998653
No 60
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.95 E-value=4.3e-26 Score=253.84 Aligned_cols=257 Identities=14% Similarity=0.133 Sum_probs=178.4
Q ss_pred cccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecC-Cc
Q 003087 9 KTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKAN-GE 86 (849)
Q Consensus 9 ~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~-g~ 86 (849)
..+.|.+++|||||++||+++ ++.|+||+.. +.....+. .+...|.+++|+|||++|++++.||+|++||+. ++
T Consensus 107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~---~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 182 (425)
T 1r5m_A 107 TTNQVTCLAWSHDGNSIVTGVENGELRLWNKT---GALLNVLN-FHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGT 182 (425)
T ss_dssp -CBCEEEEEECTTSSEEEEEETTSCEEEEETT---SCEEEEEC-CCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTE
T ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEeCC---CCeeeecc-CCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCc
Confidence 345899999999999999997 6799999943 23333333 236789999999999999999999999999996 54
Q ss_pred cceecccccc----------------------------------------------------cccccEEEEEecCCcccc
Q 003087 87 EITRFTNKHL----------------------------------------------------KVSLPIIGLIAQDETDVQ 114 (849)
Q Consensus 87 ~~~~l~~~~~----------------------------------------------------~~~~~V~~l~fs~~~~~~ 114 (849)
.+..+..+.. .+...|.+++|+|++.
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-- 260 (425)
T 1r5m_A 183 VMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNK-- 260 (425)
T ss_dssp EEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTT--
T ss_pred EEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCC--
Confidence 4433322111 1123466666666432
Q ss_pred cccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCC
Q 003087 115 RSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGP 194 (849)
Q Consensus 115 ~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~ 194 (849)
.|++++.||.|++|++.++..... +. .+...|.+++|+|+| ++++++.++
T Consensus 261 -----~l~~~~~d~~i~i~d~~~~~~~~~-----------~~-~~~~~i~~~~~~~~~-~l~~~~~d~------------ 310 (425)
T 1r5m_A 261 -----LLLSASDDGTLRIWHGGNGNSQNC-----------FY-GHSQSIVSASWVGDD-KVISCSMDG------------ 310 (425)
T ss_dssp -----EEEEEETTSCEEEECSSSBSCSEE-----------EC-CCSSCEEEEEEETTT-EEEEEETTS------------
T ss_pred -----EEEEEcCCCEEEEEECCCCccceE-----------ec-CCCccEEEEEECCCC-EEEEEeCCC------------
Confidence 367778999999999886554322 33 345679999999999 888888886
Q ss_pred ceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEEeCCCcEEEEecCCCccccccccccccc
Q 003087 195 CCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERF 274 (849)
Q Consensus 195 ~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~ 274 (849)
.|++|++..+. .+. ...+ |...|.+++|||||++||+++.||+|++|++.+.......+......
T Consensus 311 -~i~i~d~~~~~---~~~---------~~~~--~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~ 375 (425)
T 1r5m_A 311 -SVRLWSLKQNT---LLA---------LSIV--DGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDG 375 (425)
T ss_dssp -EEEEEETTTTE---EEE---------EEEC--TTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC-----------
T ss_pred -cEEEEECCCCc---EeE---------eccc--CCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeeccccc
Confidence 38999987642 111 1123 66799999999999999999999999999998654100000000000
Q ss_pred c-----cccccccCCCCCCCCC--CcEEEEEecCCE-EEEEEeCCcEEEEEecC
Q 003087 275 D-----LQVADSLFDGRTKPIS--DITDFAWWSDNI-LILARKSSIITMIDVLS 320 (849)
Q Consensus 275 ~-----~~~~~~l~~~~~~~~~--~v~~vaws~D~~-la~a~~dgti~lwdl~~ 320 (849)
. ......+ ..+.. .|.+++|+||+. |++++.||+|+||++++
T Consensus 376 ~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~g 425 (425)
T 1r5m_A 376 ILNPLPIPLYASY----QSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIPG 425 (425)
T ss_dssp ---CEECCEEEEE----CCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECCC
T ss_pred ccCcccchhhhhh----cCcccCCceEEEEccCCCceEEEEecCceEEEEeecC
Confidence 0 0000001 12323 799999999985 77899999999999864
No 61
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.95 E-value=5.4e-26 Score=254.72 Aligned_cols=254 Identities=8% Similarity=0.068 Sum_probs=180.7
Q ss_pred cceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecC-Cccc
Q 003087 11 KKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKAN-GEEI 88 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~-g~~~ 88 (849)
+.+...+|+|||++||+|+ ++.|+||+...+ .....+. .+...|++++|||||++||+|+.||+|++||+. ++.+
T Consensus 98 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~ 174 (420)
T 3vl1_A 98 DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFN--LQREIDQ-AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNP 174 (420)
T ss_dssp CEEEEEEECSSSCEEEEEETTSCEEEECTTSC--EEEEETT-SSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCC
T ss_pred CceEEEEEecCCCEEEEEECCCCEEEEeCCCc--ceeeecc-cccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCc
Confidence 3455568999999999998 679999997642 2222222 236789999999999999999999999999996 6666
Q ss_pred eecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccc--cCC--ccee--------c
Q 003087 89 TRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASA--SSS--GLTL--------R 156 (849)
Q Consensus 89 ~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~--~~~--~~~l--------~ 156 (849)
..+..| ...|.+++|+|++. .|++++.||+|++||+.++.....+.... ... ...+ .
T Consensus 175 ~~~~~h----~~~v~~~~~~~~~~-------~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 243 (420)
T 3vl1_A 175 RTLIGH----RATVTDIAIIDRGR-------NVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLH 243 (420)
T ss_dssp EEEECC----SSCEEEEEEETTTT-------EEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCG
T ss_pred eEEcCC----CCcEEEEEEcCCCC-------EEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceee
Confidence 665443 35799999998653 36677999999999998766533322000 000 0000 0
Q ss_pred cccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEE
Q 003087 157 RQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVL 236 (849)
Q Consensus 157 ~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~va 236 (849)
..+...|.+++|||+|++|++++.|++ |++|++..+. .+.. ...+ |...|.+++
T Consensus 244 ~~~~~~v~~~~~s~~~~~l~~~~~dg~-------------i~i~d~~~~~---~~~~--------~~~~--~~~~v~~~~ 297 (420)
T 3vl1_A 244 EISTSKKNNLEFGTYGKYVIAGHVSGV-------------ITVHNVFSKE---QTIQ--------LPSK--FTCSCNSLT 297 (420)
T ss_dssp GGCCCCCCTTCSSCTTEEEEEEETTSC-------------EEEEETTTCC---EEEE--------ECCT--TSSCEEEEE
T ss_pred ecccCcccceEEcCCCCEEEEEcCCCe-------------EEEEECCCCc---eeEE--------cccc--cCCCceeEE
Confidence 011235677778999999999998863 8999987642 1111 1123 778999999
Q ss_pred EccCCC-EEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCC-EEEEEEeCCcEE
Q 003087 237 ISPQGK-FVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDN-ILILARKSSIIT 314 (849)
Q Consensus 237 fSPDG~-~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~-~la~a~~dgti~ 314 (849)
|+|+|+ +|++++.||+|++||+.+++..+..+.. .+...+..+.| +++ .+++++.||+|+
T Consensus 298 ~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~-----------------~~~~~v~~~~~-~~~~~l~s~~~d~~v~ 359 (420)
T 3vl1_A 298 VDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLI-----------------NEGTPINNVYF-AAGALFVSSGFDTSIK 359 (420)
T ss_dssp ECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEE-----------------STTSCEEEEEE-ETTEEEEEETTTEEEE
T ss_pred EeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhc-----------------cCCCCceEEEe-CCCCEEEEecCCccEE
Confidence 999999 9999999999999999976432333321 12345677755 555 578889999999
Q ss_pred EEEecCCc
Q 003087 315 MIDVLSGL 322 (849)
Q Consensus 315 lwdl~~~~ 322 (849)
+|++.+..
T Consensus 360 iw~~~~~~ 367 (420)
T 3vl1_A 360 LDIISDPE 367 (420)
T ss_dssp EEEECCTT
T ss_pred EEeccCCC
Confidence 99998753
No 62
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.95 E-value=3.9e-26 Score=248.75 Aligned_cols=269 Identities=11% Similarity=0.015 Sum_probs=184.0
Q ss_pred cccceEEEEEcCC---CCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEE------EECCCCCEEEEEeCCCcE
Q 003087 9 KTKKQVSLFISPR---GERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYG------AWSESHDVLGIVDDTHTV 78 (849)
Q Consensus 9 ~~~~v~slafSPd---G~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~v------afSPDG~~LAs~~~dgtI 78 (849)
+.+.|.+++|+|+ |++||+|+ +++|++|+..... .+...+.. +...|.++ +|||||++|++|+.||+|
T Consensus 64 ~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~-~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i 141 (357)
T 3i2n_A 64 KAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPE-MPVYSVKG-HKEIINAIDGIGGLGIGEGAPEIVTGSRDGTV 141 (357)
T ss_dssp ESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCS-SCSEEECC-CSSCEEEEEEESGGGCC-CCCEEEEEETTSCE
T ss_pred ccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCC-ccEEEEEe-cccceEEEeeccccccCCCccEEEEEeCCCeE
Confidence 3468999999999 79999998 6899999976532 13333332 35678888 568999999999999999
Q ss_pred EEEecC-Cc-cceecccccccccccEEEEEe----cCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCc
Q 003087 79 YFFKAN-GE-EITRFTNKHLKVSLPIIGLIA----QDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSG 152 (849)
Q Consensus 79 rlWd~~-g~-~~~~l~~~~~~~~~~V~~l~f----s~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~ 152 (849)
++||+. ++ .+..+..+.......|.+++| ++++. .+++++.||.|++||+.++.....
T Consensus 142 ~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-------~l~~~~~d~~i~i~d~~~~~~~~~--------- 205 (357)
T 3i2n_A 142 KVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEER-------VVCAGYDNGDIKLFDLRNMALRWE--------- 205 (357)
T ss_dssp EEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCC-------EEEEEETTSEEEEEETTTTEEEEE---------
T ss_pred EEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCC-------EEEEEccCCeEEEEECccCceeee---------
Confidence 999997 43 455554433322347888885 44332 367778999999999987554211
Q ss_pred ceeccccCCceEEEEEcC---CCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccc
Q 003087 153 LTLRRQFPQNVICTDYHP---ELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQ 229 (849)
Q Consensus 153 ~~l~~~~~~~V~svafsP---dg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~ 229 (849)
. .+...|.+++|+| +|+.|++++.++ .|++|++........+.. ....+ |.
T Consensus 206 ---~-~~~~~v~~~~~~~~~~~~~~l~~~~~dg-------------~i~i~d~~~~~~~~~~~~-------~~~~~--~~ 259 (357)
T 3i2n_A 206 ---T-NIKNGVCSLEFDRKDISMNKLVATSLEG-------------KFHVFDMRTQHPTKGFAS-------VSEKA--HK 259 (357)
T ss_dssp ---E-ECSSCEEEEEESCSSSSCCEEEEEESTT-------------EEEEEEEEEEETTTEEEE-------EEEEC--CS
T ss_pred ---c-CCCCceEEEEcCCCCCCCCEEEEECCCC-------------eEEEEeCcCCCcccceee-------eccCC--Cc
Confidence 1 3456799999999 999999998886 389999876432111110 01124 78
Q ss_pred cccceEEEccCCC-EEEEEeCCCcEEEEecCCCccccccccccccccc-cc-ccccCCCCCCCCCCcEEEEEecCCE-EE
Q 003087 230 LAHPKVLISPQGK-FVATSDTNGCLYIFEMDKDNFSLSKFACGERFDL-QV-ADSLFDGRTKPISDITDFAWWSDNI-LI 305 (849)
Q Consensus 230 ~~V~~vafSPDG~-~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~-~~-~~~l~~~~~~~~~~v~~vaws~D~~-la 305 (849)
..|.+++|||+|+ +||+++.||+|++||+...... ..+...+.... .+ ...+.. -..|...|.+++|+||+. ++
T Consensus 260 ~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~g~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~ 337 (357)
T 3i2n_A 260 STVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQR-SKKDSEGIEMGVAGSVSLLQN-VTLSTQPISSLDWSPDKRGLC 337 (357)
T ss_dssp SCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC---CCTTSCCCCCCCEEEEEEE-EECCSSCEEEEEECSSSTTEE
T ss_pred CCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCccc-ccccCCCCccccccccceeec-cccCCCCeeEEEEcCCCCeEE
Confidence 8999999999999 8999999999999999865321 11100000000 00 000000 013557899999999986 66
Q ss_pred -EEEeCCcEEEEEecCCcc
Q 003087 306 -LARKSSIITMIDVLSGLK 323 (849)
Q Consensus 306 -~a~~dgti~lwdl~~~~~ 323 (849)
+++.||+|+|||+.++..
T Consensus 338 ~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 338 VCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp EEEETTSEEEEEEECC---
T ss_pred EEecCCCcEEEEECCCccc
Confidence 688999999999988653
No 63
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.94 E-value=3.9e-26 Score=254.21 Aligned_cols=255 Identities=9% Similarity=0.083 Sum_probs=183.9
Q ss_pred cceEEEEEcCCCC-eEEEEe-CCeEEEEec----CCCCCc----ceeeeee----c-----CCCCEEEEEECCCCCEEEE
Q 003087 11 KKQVSLFISPRGE-RVAVAA-VNQVTILQK----DDDYQE----PCGIFNC----T-----GLGASIYGAWSESHDVLGI 71 (849)
Q Consensus 11 ~~v~slafSPdG~-~LAsas-~~~i~iw~~----~~~~~~----~~~~~~~----~-----~~~~v~~vafSPDG~~LAs 71 (849)
+.|.+++|||||+ +||+|+ |++|+||+. .++... ....+.. + +...|.+++|||||++||+
T Consensus 46 ~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 125 (425)
T 1r5m_A 46 DNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVT 125 (425)
T ss_dssp SCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEE
T ss_pred CceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEE
Confidence 7899999999999 999998 689999998 543200 1111211 0 2348999999999999999
Q ss_pred EeCCCcEEEEecCCccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCccccccccc-C
Q 003087 72 VDDTHTVYFFKANGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASAS-S 150 (849)
Q Consensus 72 ~~~dgtIrlWd~~g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~-~ 150 (849)
|+.||+|++||.+|+.+..+..+. ..|.+++|+|++. .|++++.||.|++|++.++.....+..... .
T Consensus 126 ~~~dg~i~i~~~~~~~~~~~~~~~----~~v~~~~~~~~~~-------~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 194 (425)
T 1r5m_A 126 GVENGELRLWNKTGALLNVLNFHR----APIVSVKWNKDGT-------HIISMDVENVTILWNVISGTVMQHFELKETGG 194 (425)
T ss_dssp EETTSCEEEEETTSCEEEEECCCC----SCEEEEEECTTSS-------EEEEEETTCCEEEEETTTTEEEEEECCC----
T ss_pred EeCCCeEEEEeCCCCeeeeccCCC----ccEEEEEECCCCC-------EEEEEecCCeEEEEECCCCcEEEEeeccccCc
Confidence 999999999998888777765443 5799999988654 366779999999999987654332220000 0
Q ss_pred ---CcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCc
Q 003087 151 ---SGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHE 227 (849)
Q Consensus 151 ---~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~ 227 (849)
...... .....|.+++|+|++. +++++.++ .|++|++..... +. ...+
T Consensus 195 ~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~g-------------~i~~~d~~~~~~---~~---------~~~~-- 245 (425)
T 1r5m_A 195 SSINAENHS-GDGSLGVDVEWVDDDK-FVIPGPKG-------------AIFVYQITEKTP---TG---------KLIG-- 245 (425)
T ss_dssp ------------CCCBSCCEEEETTE-EEEECGGG-------------CEEEEETTCSSC---SE---------EECC--
T ss_pred cceeecccc-CCcceeeEEEEcCCCE-EEEEcCCC-------------eEEEEEcCCCce---ee---------eecc--
Confidence 000000 0011289999999986 55677775 389999876421 11 1123
Q ss_pred cccccceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCEEEEE
Q 003087 228 VQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNILILA 307 (849)
Q Consensus 228 h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~la~a 307 (849)
|...|.+++|+|+|++|++++.||+|++||+.+.+. +..+. .+...|.+++|+||+.++++
T Consensus 246 ~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~------------------~~~~~i~~~~~~~~~~l~~~ 306 (425)
T 1r5m_A 246 HHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNS-QNCFY------------------GHSQSIVSASWVGDDKVISC 306 (425)
T ss_dssp CSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSC-SEEEC------------------CCSSCEEEEEEETTTEEEEE
T ss_pred CCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCcc-ceEec------------------CCCccEEEEEECCCCEEEEE
Confidence 778999999999999999999999999999987643 22322 24467899999999988899
Q ss_pred EeCCcEEEEEecCCccc
Q 003087 308 RKSSIITMIDVLSGLKV 324 (849)
Q Consensus 308 ~~dgti~lwdl~~~~~l 324 (849)
+.||.|++||+.+++.+
T Consensus 307 ~~d~~i~i~d~~~~~~~ 323 (425)
T 1r5m_A 307 SMDGSVRLWSLKQNTLL 323 (425)
T ss_dssp ETTSEEEEEETTTTEEE
T ss_pred eCCCcEEEEECCCCcEe
Confidence 99999999999988743
No 64
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.94 E-value=6.9e-26 Score=276.25 Aligned_cols=246 Identities=11% Similarity=0.138 Sum_probs=190.5
Q ss_pred cccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecC-Cc
Q 003087 9 KTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKAN-GE 86 (849)
Q Consensus 9 ~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~-g~ 86 (849)
+.+.|.+++|||||++||+++ +++|+||+..++ .....+.. +...|++++|||||++||+|+.||+|+|||+. |+
T Consensus 12 h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~--~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~ 88 (814)
T 3mkq_A 12 RSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQ--VEVRSIQV-TETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE 88 (814)
T ss_dssp ECSCEEEEEECSSSSEEEEEETTSEEEEEETTTT--EEEEEEEC-CSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCC
T ss_pred CCCceEEEEECCCCCEEEEEeCCCEEEEEECCCC--ceEEEEec-CCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc
Confidence 457899999999999999998 679999997642 33334432 36789999999999999999999999999986 66
Q ss_pred cceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEE
Q 003087 87 EITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICT 166 (849)
Q Consensus 87 ~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~sv 166 (849)
.+..+..|. ..|.+++|+|++. .+++++.||+|++|++.++.... ..+. .|...|.++
T Consensus 89 ~~~~~~~~~----~~v~~~~~s~~~~-------~l~~~~~dg~i~vw~~~~~~~~~----------~~~~-~~~~~v~~~ 146 (814)
T 3mkq_A 89 KVVDFEAHP----DYIRSIAVHPTKP-------YVLSGSDDLTVKLWNWENNWALE----------QTFE-GHEHFVMCV 146 (814)
T ss_dssp EEEEEECCS----SCEEEEEECSSSS-------EEEEEETTSEEEEEEGGGTSEEE----------EEEE-CCSSCEEEE
T ss_pred EEEEEecCC----CCEEEEEEeCCCC-------EEEEEcCCCEEEEEECCCCceEE----------EEEc-CCCCcEEEE
Confidence 656654432 5799999998654 26677999999999998653211 1233 345679999
Q ss_pred EEcC-CCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEcc--CCCE
Q 003087 167 DYHP-ELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISP--QGKF 243 (849)
Q Consensus 167 afsP-dg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSP--DG~~ 243 (849)
+|+| +|+.|++++.|+ .|++|++.++.....+ . .+ |...|..++|+| ||++
T Consensus 147 ~~~p~~~~~l~~~~~dg-------------~v~vwd~~~~~~~~~~---------~--~~--~~~~v~~~~~~~~~~~~~ 200 (814)
T 3mkq_A 147 AFNPKDPSTFASGCLDR-------------TVKVWSLGQSTPNFTL---------T--TG--QERGVNYVDYYPLPDKPY 200 (814)
T ss_dssp EEETTEEEEEEEEETTS-------------EEEEEETTCSSCSEEE---------E--CC--CTTCCCEEEECCSTTCCE
T ss_pred EEEcCCCCEEEEEeCCC-------------eEEEEECCCCcceeEE---------e--cC--CCCCEEEEEEEECCCCCE
Confidence 9999 899999999886 3899998664211111 0 11 446899999999 9999
Q ss_pred EEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EEEEEeCCcEEEEEecCCc
Q 003087 244 VATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LILARKSSIITMIDVLSGL 322 (849)
Q Consensus 244 LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~a~~dgti~lwdl~~~~ 322 (849)
|++++.||+|++||+.++.. +..+. .|...|..++|+||+. +++++.||+|++||+.+++
T Consensus 201 l~~~~~dg~i~~~d~~~~~~-~~~~~------------------~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~ 261 (814)
T 3mkq_A 201 MITASDDLTIKIWDYQTKSC-VATLE------------------GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK 261 (814)
T ss_dssp EEEECTTSEEEEEETTTTEE-EEEEE------------------CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCS
T ss_pred EEEEeCCCEEEEEECCCCcE-EEEEc------------------CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence 99999999999999987643 33332 2446789999999985 7788999999999999877
Q ss_pred cc
Q 003087 323 KV 324 (849)
Q Consensus 323 ~l 324 (849)
.+
T Consensus 262 ~~ 263 (814)
T 3mkq_A 262 VE 263 (814)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 65
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.94 E-value=6.6e-26 Score=251.72 Aligned_cols=250 Identities=9% Similarity=0.026 Sum_probs=179.1
Q ss_pred cccceEEEEEcC-CCCeEEEEe-CCeEEEEecCCCCCcceeeeeec--CCCCEEEEEECCCCCEEEEEeCCCcEEEEecC
Q 003087 9 KTKKQVSLFISP-RGERVAVAA-VNQVTILQKDDDYQEPCGIFNCT--GLGASIYGAWSESHDVLGIVDDTHTVYFFKAN 84 (849)
Q Consensus 9 ~~~~v~slafSP-dG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~--~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~ 84 (849)
+.+.|.+++||| ||++||+++ |++|++|+..+ .....+... +...|.+++|||||++||+|+.||+|++||+.
T Consensus 117 h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~ 193 (383)
T 3ei3_B 117 PGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG---SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD 193 (383)
T ss_dssp TTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS---CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT
T ss_pred cCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC---CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC
Confidence 567899999999 789999998 68999999864 223333321 13679999999999999999999999999999
Q ss_pred CccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceE
Q 003087 85 GEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVI 164 (849)
Q Consensus 85 g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~ 164 (849)
++.+..+..+. ..|.+++|+|++.. .+++++.||+|++||+.++....... ..+ .+...|.
T Consensus 194 ~~~~~~~~~h~----~~v~~~~~~~~~~~------~l~s~~~d~~i~iwd~~~~~~~~~~~-------~~~--~~~~~v~ 254 (383)
T 3ei3_B 194 GHEIFKEKLHK----AKVTHAEFNPRCDW------LMATSSVDATVKLWDLRNIKDKNSYI-------AEM--PHEKPVN 254 (383)
T ss_dssp SCEEEEEECSS----SCEEEEEECSSCTT------EEEEEETTSEEEEEEGGGCCSTTCEE-------EEE--ECSSCEE
T ss_pred CCEEEEeccCC----CcEEEEEECCCCCC------EEEEEeCCCEEEEEeCCCCCcccceE-------EEe--cCCCceE
Confidence 88777765443 57999999986531 26677999999999998744311110 112 3456799
Q ss_pred EEEEcC-CCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccc----------cccc
Q 003087 165 CTDYHP-ELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQ----------LAHP 233 (849)
Q Consensus 165 svafsP-dg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~----------~~V~ 233 (849)
+++|+| +|++|++++.|+ .|++|++........+.... ....+ |. ..+.
T Consensus 255 ~~~~s~~~~~~l~~~~~d~-------------~i~iwd~~~~~~~~~~~~~~-----~~~~~--~~~~~~~~~~p~~~~~ 314 (383)
T 3ei3_B 255 AAYFNPTDSTKLLTTDQRN-------------EIRVYSSYDWSKPDQIIIHP-----HRQFQ--HLTPIKATWHPMYDLI 314 (383)
T ss_dssp EEEECTTTSCEEEEEESSS-------------EEEEEETTBTTSCSEEEECC-----BCCCT--TSCCCCCEECSSSSEE
T ss_pred EEEEcCCCCCEEEEEcCCC-------------cEEEEECCCCcccccccccc-----ccccc--cccceEEeccCCCCce
Confidence 999999 999999999886 38999987653322221100 00000 22 2444
Q ss_pred eEEEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCEE-EEEEeCCc
Q 003087 234 KVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNIL-ILARKSSI 312 (849)
Q Consensus 234 ~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~l-a~a~~dgt 312 (849)
.++|||||++ +++.||+|+|||+.+++. +..+... .+...+..++|+||+.+ +++ .||+
T Consensus 315 ~~~~s~dg~~--s~s~d~~i~iwd~~~~~~-~~~l~~~----------------~~~~~~~~~~~s~~g~~l~s~-sd~~ 374 (383)
T 3ei3_B 315 VAGRYPDDQL--LLNDKRTIDIYDANSGGL-VHQLRDP----------------NAAGIISLNKFSPTGDVLASG-MGFN 374 (383)
T ss_dssp EEECBCCTTT--CTTCCCCEEEEETTTCCE-EEEECBT----------------TBCSCCCEEEECTTSSEEEEE-ETTE
T ss_pred EEEecCCccc--ccCCCCeEEEEecCCCce-eeeecCC----------------CCCceEEEEEEecCccEEEEe-cCCc
Confidence 5788888888 888999999999988754 3443311 12344666799999875 455 4999
Q ss_pred EEEEEecC
Q 003087 313 ITMIDVLS 320 (849)
Q Consensus 313 i~lwdl~~ 320 (849)
|+|||+.+
T Consensus 375 i~iw~~~~ 382 (383)
T 3ei3_B 375 ILIWNRED 382 (383)
T ss_dssp EEEEECC-
T ss_pred EEEEecCC
Confidence 99999875
No 66
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.94 E-value=5.7e-26 Score=249.29 Aligned_cols=276 Identities=8% Similarity=0.000 Sum_probs=185.8
Q ss_pred cccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeee-ecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCCc
Q 003087 9 KTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFN-CTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANGE 86 (849)
Q Consensus 9 ~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~-~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~ 86 (849)
+.+.|.+++|+|||++||+++ |++|++|+...+ ....... ..+...|.+++|+|||++||+|+.||+|++||+...
T Consensus 51 h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~ 128 (372)
T 1k8k_C 51 HNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGR--TWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQE 128 (372)
T ss_dssp CSSCEEEEEEETTTTEEEEEETTSCEEEEEEETT--EEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETT
T ss_pred CCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCC--eeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCC
Confidence 457899999999999999998 679999997643 2122222 223568999999999999999999999999999744
Q ss_pred c----ceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCccc-----ccccc-cC-Cccee
Q 003087 87 E----ITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASI-----SSASA-SS-SGLTL 155 (849)
Q Consensus 87 ~----~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~-----~~~~~-~~-~~~~l 155 (849)
. ...+...| ...|.+++|+|++. .|++++.||.|++||+........ ..... .. ....+
T Consensus 129 ~~~~~~~~~~~~~---~~~i~~~~~~~~~~-------~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (372)
T 1k8k_C 129 NDWWVCKHIKKPI---RSTVLSLDWHPNSV-------LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFES 198 (372)
T ss_dssp TTEEEEEEECTTC---CSCEEEEEECTTSS-------EEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEEC
T ss_pred Ccceeeeeeeccc---CCCeeEEEEcCCCC-------EEEEEcCCCCEEEEEcccccccccccccccccccchhhheEec
Confidence 3 22332222 35799999998653 366778999999999753211000 00000 00 01123
Q ss_pred ccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceE
Q 003087 156 RRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKV 235 (849)
Q Consensus 156 ~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~v 235 (849)
. .|...|.+++|+|+|++|++++.|+ .|++|++..+. .+. ...+ |...|.++
T Consensus 199 ~-~~~~~v~~~~~~~~~~~l~~~~~d~-------------~i~i~d~~~~~---~~~---------~~~~--~~~~v~~~ 250 (372)
T 1k8k_C 199 S-SSCGWVHGVCFSANGSRVAWVSHDS-------------TVCLADADKKM---AVA---------TLAS--ETLPLLAV 250 (372)
T ss_dssp C-CCSSCEEEEEECSSSSEEEEEETTT-------------EEEEEEGGGTT---EEE---------EEEC--SSCCEEEE
T ss_pred C-CCCCeEEEEEECCCCCEEEEEeCCC-------------EEEEEECCCCc---eeE---------EEcc--CCCCeEEE
Confidence 3 3455799999999999999999886 38999987642 111 1123 66789999
Q ss_pred EEccCCCEEEEEeCCCcEEEEecCC--Cccc-cccccccc--------------ccccccccc-----cCCCCCCCCCCc
Q 003087 236 LISPQGKFVATSDTNGCLYIFEMDK--DNFS-LSKFACGE--------------RFDLQVADS-----LFDGRTKPISDI 293 (849)
Q Consensus 236 afSPDG~~LAs~s~Dgtv~LWd~~~--~~~~-l~~~~~~~--------------~~~~~~~~~-----l~~~~~~~~~~v 293 (849)
+|+|||++||++ .||.|++|++.+ +... +..+.... ..+...... ...-...|...|
T Consensus 251 ~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 329 (372)
T 1k8k_C 251 TFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSV 329 (372)
T ss_dssp EEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCE
T ss_pred EEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCc
Confidence 999999999988 999999999987 3110 00000000 000000000 000002467789
Q ss_pred EEEEEe-cCC----EEEEEEeCCcEEEEEecCCcccc
Q 003087 294 TDFAWW-SDN----ILILARKSSIITMIDVLSGLKVK 325 (849)
Q Consensus 294 ~~vaws-~D~----~la~a~~dgti~lwdl~~~~~l~ 325 (849)
.+++|. +|| .+++++.||+|+||++.+++.++
T Consensus 330 ~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~~~ 366 (372)
T 1k8k_C 330 SQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESAL 366 (372)
T ss_dssp EEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHHHC
T ss_pred ceeEEecCCCcceeeEEEecCCCceEEEEecChhHhh
Confidence 999977 564 68899999999999999887654
No 67
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.94 E-value=1.2e-25 Score=254.23 Aligned_cols=248 Identities=15% Similarity=0.153 Sum_probs=177.3
Q ss_pred EEEEEcCCCCeEEEEeCCeEEEEecCCCCCcceeeeeecC-CCCEEEEEECCCCCEEEEEeCCCcEEEEecC-Cccceec
Q 003087 14 VSLFISPRGERVAVAAVNQVTILQKDDDYQEPCGIFNCTG-LGASIYGAWSESHDVLGIVDDTHTVYFFKAN-GEEITRF 91 (849)
Q Consensus 14 ~slafSPdG~~LAsas~~~i~iw~~~~~~~~~~~~~~~~~-~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~-g~~~~~l 91 (849)
.-|+||++ ++||+|.|++|+||+..++ .....+..++ ...|++|+|||||++||+|+.||+|+|||+. |+.+..+
T Consensus 109 ~~l~wS~~-n~lAvgld~tV~lWd~~tg--~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~ 185 (420)
T 4gga_A 109 NLVDWSSG-NVLAVALDNSVYLWSASSG--DILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM 185 (420)
T ss_dssp BCEEECTT-SEEEEEETTEEEEEETTTC--CEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred eeEEECCC-CEEEEEeCCEEEEEECCCC--CEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEE
Confidence 45999986 5999999999999998753 3344444333 5679999999999999999999999999997 6666655
Q ss_pred ccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEcCC
Q 003087 92 TNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPE 171 (849)
Q Consensus 92 ~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPd 171 (849)
..|. ..|.++.+.+. .+++++.|+++++|+....... ..++. +|...|..+.|+|+
T Consensus 186 ~~h~----~~v~~~s~~~~---------~l~sgs~d~~i~~~d~~~~~~~----------~~~~~-~h~~~~~~~~~~~~ 241 (420)
T 4gga_A 186 TSHS----ARVGSLSWNSY---------ILSSGSRSGHIHHHDVRVAEHH----------VATLS-GHSQEVCGLRWAPD 241 (420)
T ss_dssp CCCS----SCEEEEEEETT---------EEEEEETTSEEEEEETTSSSCE----------EEEEE-CCSSCEEEEEECTT
T ss_pred eCCC----CceEEEeeCCC---------EEEEEeCCCceeEeeeccccee----------eEEec-ccccceeeeeecCC
Confidence 4432 46777776432 3566789999999998754321 11334 34567999999999
Q ss_pred CceEEEEecCCCCccccC--CCCC----------------------------------CceeeEEEecCCcCcccceecc
Q 003087 172 LSLLSVVSNTDTSSLTSS--GNSG----------------------------------PCCISLWRRCHNLELEQLYTTQ 215 (849)
Q Consensus 172 g~lLas~g~d~t~~~~~~--~~~G----------------------------------~~~I~lW~~~~~~~~~~l~~~~ 215 (849)
|+.+++++.|+++++|.. +... ..+|++|++.++.
T Consensus 242 g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~--------- 312 (420)
T 4gga_A 242 GRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA--------- 312 (420)
T ss_dssp SSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTE---------
T ss_pred CCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccc---------
Confidence 999999999986555522 1000 0123333322210
Q ss_pred ccceeeccCCCccccccceEEEccCCCEEEEEe--CCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCc
Q 003087 216 IEGLYCEPKGHEVQLAHPKVLISPQGKFVATSD--TNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDI 293 (849)
Q Consensus 216 ~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s--~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v 293 (849)
...... +...|.++.|+|+++.|++++ .||+|+|||+.+.++ +..+. +|...|
T Consensus 313 ---~~~~~~---~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~-v~~l~------------------gH~~~V 367 (420)
T 4gga_A 313 ---CLSAVD---AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAK-VAELK------------------GHTSRV 367 (420)
T ss_dssp ---EEEEEE---CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCE-EEEEC------------------CCSSCE
T ss_pred ---cceeec---cccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcE-EEEEc------------------CCCCCE
Confidence 000111 345788999999999998876 799999999998754 44443 466789
Q ss_pred EEEEEecCCE-EEEEEeCCcEEEEEecCCc
Q 003087 294 TDFAWWSDNI-LILARKSSIITMIDVLSGL 322 (849)
Q Consensus 294 ~~vaws~D~~-la~a~~dgti~lwdl~~~~ 322 (849)
.+++|+|||. |++|+.||+|+|||+....
T Consensus 368 ~~l~~spdg~~l~S~s~D~tvriWdv~~~~ 397 (420)
T 4gga_A 368 LSLTMSPDGATVASAAADETLRLWRCFELD 397 (420)
T ss_dssp EEEEECTTSSCEEEEETTTEEEEECCSCSS
T ss_pred EEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 9999999985 8899999999999997653
No 68
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.94 E-value=5.2e-26 Score=251.40 Aligned_cols=273 Identities=9% Similarity=0.060 Sum_probs=173.9
Q ss_pred cccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCC-CcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCCc
Q 003087 9 KTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDY-QEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANGE 86 (849)
Q Consensus 9 ~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~-~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~ 86 (849)
+.+.|.+++|||||++||+++ |++|+||+...+. ..+...+. .+...|.+++|||||++||+|+.||+|++||+...
T Consensus 54 h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 132 (377)
T 3dwl_C 54 HDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLL-RLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQE 132 (377)
T ss_dssp CSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECC-CCSSCEEEEECCTTSSCCEEEESSSCEEECCC---
T ss_pred CCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEec-ccCCceEEEEECCCCCEEEEEecCCeEEEEEECCc
Confidence 457899999999999999998 6899999976532 11222222 23678999999999999999999999999999744
Q ss_pred c----ceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCccccc-----cc--ccCCccee
Q 003087 87 E----ITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISS-----AS--ASSSGLTL 155 (849)
Q Consensus 87 ~----~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~-----~~--~~~~~~~l 155 (849)
. ...+...| ...|.+++|+|++. .|++++.||+|++||+..+....... .. ......++
T Consensus 133 ~~~~~~~~~~~~h---~~~v~~~~~~~~~~-------~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (377)
T 3dwl_C 133 NDWWVSKHLKRPL---RSTILSLDWHPNNV-------LLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY 202 (377)
T ss_dssp --CCCCEEECSSC---CSCEEEEEECTTSS-------EEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC
T ss_pred ccceeeeEeeccc---CCCeEEEEEcCCCC-------EEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc
Confidence 3 44444312 36799999998653 36777999999999996433211000 00 00001123
Q ss_pred ccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceE
Q 003087 156 RRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKV 235 (849)
Q Consensus 156 ~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~v 235 (849)
.|...|.+++|+|+|++||+++.|+ .|++|++.++..... .+....+ |...|.++
T Consensus 203 --~~~~~v~~~~~sp~~~~l~~~~~d~-------------~i~iwd~~~~~~~~~--------~~~~~~~--~~~~v~~~ 257 (377)
T 3dwl_C 203 --PSGGWVHAVGFSPSGNALAYAGHDS-------------SVTIAYPSAPEQPPR--------ALITVKL--SQLPLRSL 257 (377)
T ss_dssp --CCSSSEEEEEECTTSSCEEEEETTT-------------EEC-CEECSTTSCEE--------ECCCEEC--SSSCEEEE
T ss_pred --cCCceEEEEEECCCCCEEEEEeCCC-------------cEEEEECCCCCCcce--------eeEeecC--CCCceEEE
Confidence 3456799999999999999999886 389999987532100 0111234 77899999
Q ss_pred EEccCCCEEEEEeCCCcEEEEecCCCccc-cccccccccccc-----------------------cccccc---------
Q 003087 236 LISPQGKFVATSDTNGCLYIFEMDKDNFS-LSKFACGERFDL-----------------------QVADSL--------- 282 (849)
Q Consensus 236 afSPDG~~LAs~s~Dgtv~LWd~~~~~~~-l~~~~~~~~~~~-----------------------~~~~~l--------- 282 (849)
+|||||++||+++.|+.+ +|+....... ...+........ ..+..+
T Consensus 258 ~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 336 (377)
T 3dwl_C 258 LWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSI 336 (377)
T ss_dssp EEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------
T ss_pred EEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccc
Confidence 999999999999877777 6665532110 111110000000 000000
Q ss_pred CCCCCCCCCCcEEEEEecCC-----EEEEEEeCCcEEEEEe
Q 003087 283 FDGRTKPISDITDFAWWSDN-----ILILARKSSIITMIDV 318 (849)
Q Consensus 283 ~~~~~~~~~~v~~vaws~D~-----~la~a~~dgti~lwdl 318 (849)
..-...|...|.++++.+++ .+++++.||+|+|||+
T Consensus 337 ~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 337 SSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 00011277789999977654 5899999999999986
No 69
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2.5e-26 Score=256.43 Aligned_cols=262 Identities=12% Similarity=0.163 Sum_probs=186.4
Q ss_pred ccccceEEEEEcCCCC-eEEEE----------e-CCeEEEEecCCCCC-cceeeeeecCCCCEEEEEECCCCCEEEEEeC
Q 003087 8 RKTKKQVSLFISPRGE-RVAVA----------A-VNQVTILQKDDDYQ-EPCGIFNCTGLGASIYGAWSESHDVLGIVDD 74 (849)
Q Consensus 8 ~~~~~v~slafSPdG~-~LAsa----------s-~~~i~iw~~~~~~~-~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~ 74 (849)
+....|.+++|||||+ +||+| + |++|+||+...+.. .+... ..+...|.+++|||||++||+|+.
T Consensus 10 ~~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~ 87 (416)
T 2pm9_A 10 AEFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIAS--LQVDSKFNDLDWSHNNKIIAGALD 87 (416)
T ss_dssp CEEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCC--CCCSSCEEEEEECSSSSCEEEEES
T ss_pred hhhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEE--EecCCceEEEEECCCCCeEEEEcc
Confidence 4456789999999998 99998 5 57899999764311 12211 224678999999999999999999
Q ss_pred CCcEEEEecCC-----ccceecccccccccccEEEEEecCC-cccccccceeEEEEeCCCcEEEEEecCCCCcc-ccccc
Q 003087 75 THTVYFFKANG-----EEITRFTNKHLKVSLPIIGLIAQDE-TDVQRSCLCSFTVFTSDGFLHQIEISQDPSAS-ISSAS 147 (849)
Q Consensus 75 dgtIrlWd~~g-----~~~~~l~~~~~~~~~~V~~l~fs~~-~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~-~~~~~ 147 (849)
||+|+|||+.. +.+..+..| ...|.+++|+|+ +. .+++++.||+|++||+.++.... .+. .
T Consensus 88 dg~v~vw~~~~~~~~~~~~~~~~~h----~~~v~~~~~~~~~~~-------~l~s~~~dg~v~iwd~~~~~~~~~~~~-~ 155 (416)
T 2pm9_A 88 NGSLELYSTNEANNAINSMARFSNH----SSSVKTVKFNAKQDN-------VLASGGNNGEIFIWDMNKCTESPSNYT-P 155 (416)
T ss_dssp SSCEEEECCSSTTSCCCEEEECCCS----SSCCCEEEECSSSTT-------BEEEECSSSCEEBCBTTTTSSCTTTCC-C
T ss_pred CCeEEEeecccccccccchhhccCC----ccceEEEEEcCCCCC-------EEEEEcCCCeEEEEECCCCcccccccc-c
Confidence 99999999975 244444333 357899999885 33 36677899999999998765110 000 0
Q ss_pred ccCCcceeccccCCceEEEEEcCC-CceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCC
Q 003087 148 ASSSGLTLRRQFPQNVICTDYHPE-LSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGH 226 (849)
Q Consensus 148 ~~~~~~~l~~~~~~~V~svafsPd-g~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~ 226 (849)
.....+. .|...|.+++|+|+ +.+|++++.|++ |++|++..+.....+ .. .....+
T Consensus 156 --~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~-------------v~iwd~~~~~~~~~~---~~---~~~~~~- 212 (416)
T 2pm9_A 156 --LTPGQSM-SSVDEVISLAWNQSLAHVFASAGSSNF-------------ASIWDLKAKKEVIHL---SY---TSPNSG- 212 (416)
T ss_dssp --BCCCCSC-CSSCCCCEEEECSSCTTEEEEESSSSC-------------EEEEETTTTEEEEEE---CC---CCCSSC-
T ss_pred --ccccccc-CCCCCeeEEEeCCCCCcEEEEEcCCCC-------------EEEEECCCCCcceEE---ec---cccccc-
Confidence 0000112 34567999999999 788999888863 899998764211111 00 001122
Q ss_pred ccccccceEEEccCC-CEEEEEeCCC---cEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEec-C
Q 003087 227 EVQLAHPKVLISPQG-KFVATSDTNG---CLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWS-D 301 (849)
Q Consensus 227 ~h~~~V~~vafSPDG-~~LAs~s~Dg---tv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~-D 301 (849)
|...|.+++|+|+| ++||+++.|| +|++||+.+....+..+. ..|...|.+++|+| |
T Consensus 213 -~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~-----------------~~~~~~v~~~~~s~~~ 274 (416)
T 2pm9_A 213 -IKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLN-----------------QGHQKGILSLDWCHQD 274 (416)
T ss_dssp -CCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCC-----------------SCCSSCEEEEEECSSC
T ss_pred -cCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEee-----------------cCccCceeEEEeCCCC
Confidence 46789999999998 6999999999 999999987532222221 02456799999999 7
Q ss_pred CE-EEEEEeCCcEEEEEecCCccc
Q 003087 302 NI-LILARKSSIITMIDVLSGLKV 324 (849)
Q Consensus 302 ~~-la~a~~dgti~lwdl~~~~~l 324 (849)
+. +++++.||+|+|||+.+++.+
T Consensus 275 ~~~l~s~~~dg~v~~wd~~~~~~~ 298 (416)
T 2pm9_A 275 EHLLLSSGRDNTVLLWNPESAEQL 298 (416)
T ss_dssp SSCEEEEESSSEEEEECSSSCCEE
T ss_pred CCeEEEEeCCCCEEEeeCCCCccc
Confidence 65 788999999999999988754
No 70
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.94 E-value=2.3e-25 Score=242.72 Aligned_cols=257 Identities=8% Similarity=0.034 Sum_probs=183.3
Q ss_pred cccceEEEEEcCCCCeEE-EEe----CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCC---CCEEEEEeCCCcEEE
Q 003087 9 KTKKQVSLFISPRGERVA-VAA----VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSES---HDVLGIVDDTHTVYF 80 (849)
Q Consensus 9 ~~~~v~slafSPdG~~LA-sas----~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPD---G~~LAs~~~dgtIrl 80 (849)
+.+.|.+++|||||+.++ +++ |++|+||+...+ .........+...|.+++|+|+ |++||+|+.||+|++
T Consensus 17 h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i 94 (357)
T 3i2n_A 17 FNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHG--DLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHI 94 (357)
T ss_dssp CSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSS--SEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEE
T ss_pred CCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCC--cccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEE
Confidence 447899999999997665 453 679999998653 2222222223678999999999 799999999999999
Q ss_pred EecC-Cc-cceecccccccccccEEEEEecCCcccccccc-eeEEEEeCCCcEEEEEecCCC-CcccccccccCCcceec
Q 003087 81 FKAN-GE-EITRFTNKHLKVSLPIIGLIAQDETDVQRSCL-CSFTVFTSDGFLHQIEISQDP-SASISSASASSSGLTLR 156 (849)
Q Consensus 81 Wd~~-g~-~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~-~~~~~~s~Dg~v~lw~~~~~~-~~~~~~~~~~~~~~~l~ 156 (849)
||+. ++ .+..+..+ ...|.++.|.+... ++.+ ..|++++.||+|++||+.++. ....+. ...
T Consensus 95 wd~~~~~~~~~~~~~~----~~~v~~~~~~~~~~--~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~--------~~~ 160 (357)
T 3i2n_A 95 WNLEAPEMPVYSVKGH----KEIINAIDGIGGLG--IGEGAPEIVTGSRDGTVKVWDPRQKDDPVANME--------PVQ 160 (357)
T ss_dssp ECTTSCSSCSEEECCC----SSCEEEEEEESGGG--CC-CCCEEEEEETTSCEEEECTTSCSSCSEEEC--------CCT
T ss_pred EeCCCCCccEEEEEec----ccceEEEeeccccc--cCCCccEEEEEeCCCeEEEEeCCCCCCcceecc--------ccC
Confidence 9997 44 45555433 25788887654211 1111 247788999999999998765 222211 112
Q ss_pred cccCCceEEEE----EcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCcccccc
Q 003087 157 RQFPQNVICTD----YHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAH 232 (849)
Q Consensus 157 ~~~~~~V~sva----fsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V 232 (849)
++....|++++ |+|+|++|++++.++ .|++|++.... .+.. .+ |...|
T Consensus 161 ~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~-------------~i~i~d~~~~~---~~~~----------~~--~~~~v 212 (357)
T 3i2n_A 161 GENKRDCWTVAFGNAYNQEERVVCAGYDNG-------------DIKLFDLRNMA---LRWE----------TN--IKNGV 212 (357)
T ss_dssp TSCCCCEEEEEEECCCC-CCCEEEEEETTS-------------EEEEEETTTTE---EEEE----------EE--CSSCE
T ss_pred CCCCCceEEEEEEeccCCCCCEEEEEccCC-------------eEEEEECccCc---eeee----------cC--CCCce
Confidence 23334699998 799999999998886 38999987642 1110 11 66789
Q ss_pred ceEEEcc---CCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE--EEEE
Q 003087 233 PKVLISP---QGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI--LILA 307 (849)
Q Consensus 233 ~~vafSP---DG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~--la~a 307 (849)
.+++|+| +|++|++++.||+|++||+.+... +..+.... + ..|...|.+++|+|++. ++++
T Consensus 213 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~---------~----~~~~~~v~~~~~~~~~~~~l~~~ 278 (357)
T 3i2n_A 213 CSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHP-TKGFASVS---------E----KAHKSTVWQVRHLPQNRELFLTA 278 (357)
T ss_dssp EEEEESCSSSSCCEEEEEESTTEEEEEEEEEEET-TTEEEEEE---------E----ECCSSCEEEEEEETTEEEEEEEE
T ss_pred EEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCc-ccceeeec---------c----CCCcCCEEEEEECCCCCcEEEEE
Confidence 9999999 999999999999999999987643 23322100 0 13456799999999986 6788
Q ss_pred EeCCcEEEEEecCCcc
Q 003087 308 RKSSIITMIDVLSGLK 323 (849)
Q Consensus 308 ~~dgti~lwdl~~~~~ 323 (849)
+.||.|+|||+.++..
T Consensus 279 ~~dg~i~iwd~~~~~~ 294 (357)
T 3i2n_A 279 GGAGGLHLWKYEYPIQ 294 (357)
T ss_dssp ETTSEEEEEEEECCSC
T ss_pred eCCCcEEEeecCCCcc
Confidence 9999999999997653
No 71
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.2e-25 Score=274.31 Aligned_cols=256 Identities=14% Similarity=0.157 Sum_probs=190.7
Q ss_pred ccccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCC--CCEEEEEeCCCcEEEEecC
Q 003087 8 RKTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSES--HDVLGIVDDTHTVYFFKAN 84 (849)
Q Consensus 8 ~~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPD--G~~LAs~~~dgtIrlWd~~ 84 (849)
.+.+.|.+++|||||++||+|+ |++|+||+..++.......+. .+.+.|++++|||+ |++|++|+.||+|++||+.
T Consensus 7 gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~-~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~ 85 (753)
T 3jro_A 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLT-GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEE 85 (753)
T ss_dssp -CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEEC-CCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEE
T ss_pred cCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceecc-CCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECC
Confidence 3568899999999999999997 689999997643223333332 23678999999999 9999999999999999997
Q ss_pred Cc---cceecccccccccccEEEEEecCC--cccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceecccc
Q 003087 85 GE---EITRFTNKHLKVSLPIIGLIAQDE--TDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQF 159 (849)
Q Consensus 85 g~---~~~~l~~~~~~~~~~V~~l~fs~~--~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~ 159 (849)
+. .+..+.. +...|.+++|+|+ +. .+++++.||+|++||+.++..... ..+. .+
T Consensus 86 ~~~~~~~~~~~~----h~~~V~~v~~sp~~~~~-------~l~sgs~dg~I~vwdl~~~~~~~~---------~~~~-~~ 144 (753)
T 3jro_A 86 NGRWSQIAVHAV----HSASVNSVQWAPHEYGP-------LLLVASSDGKVSVVEFKENGTTSP---------IIID-AH 144 (753)
T ss_dssp TTEEEEEEEECC----CSSCEEEEEECCGGGCS-------EEEEEETTSEEEEEECCSSSCCCC---------EEEE-CC
T ss_pred CCcccccccccC----CCCCeEEEEECCCCCCC-------EEEEEeCCCcEEEEEeecCCCcce---------eEee-cC
Confidence 54 3333322 2367999999986 32 477789999999999987643221 1233 34
Q ss_pred CCceEEEEEcC-------------CCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCC
Q 003087 160 PQNVICTDYHP-------------ELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGH 226 (849)
Q Consensus 160 ~~~V~svafsP-------------dg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~ 226 (849)
+..|.+++|+| ||++|++|+.|++ |++|++.++.....+ .....+
T Consensus 145 ~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~-------------I~iwd~~~~~~~~~~--------~~~~~~- 202 (753)
T 3jro_A 145 AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNL-------------VKIWKYNSDAQTYVL--------ESTLEG- 202 (753)
T ss_dssp SSCEEEEEECCCC---------CGGGCCEEEEETTSC-------------EEEEEEETTTTEEEE--------EEEECC-
T ss_pred CCceEEEEecCcccccccccccCCCCCEEEEEECCCe-------------EEEEeccCCccccee--------eeeecC-
Confidence 56799999999 6999999999873 899999765211111 112234
Q ss_pred ccccccceEEEccC---CCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE
Q 003087 227 EVQLAHPKVLISPQ---GKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI 303 (849)
Q Consensus 227 ~h~~~V~~vafSPD---G~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~ 303 (849)
|...|.+++|||+ |++||+++.||+|++||+.++........ .. ...+...|.+++|+|||.
T Consensus 203 -h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~------------~~--~~~~~~~v~~l~~spdg~ 267 (753)
T 3jro_A 203 -HSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTL------------LK--EEKFPDVLWRASWSLSGN 267 (753)
T ss_dssp -CSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCB------------SS--SSCCSSCCCCEEECTTTC
T ss_pred -CCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEE------------ec--cCCCCCceEEEEEcCCCC
Confidence 8889999999999 99999999999999999987632100100 00 013556789999999986
Q ss_pred -EEEEEeCCcEEEEEecCCc
Q 003087 304 -LILARKSSIITMIDVLSGL 322 (849)
Q Consensus 304 -la~a~~dgti~lwdl~~~~ 322 (849)
+++++.||.|+||++.++.
T Consensus 268 ~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 268 VLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp CEEEECSSSCEECCBCCSSS
T ss_pred EEEEEcCCCEEEEEecCCCC
Confidence 7788999999999998654
No 72
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.94 E-value=2.7e-25 Score=284.45 Aligned_cols=255 Identities=14% Similarity=0.198 Sum_probs=191.1
Q ss_pred cccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecC-Cc
Q 003087 9 KTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKAN-GE 86 (849)
Q Consensus 9 ~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~-g~ 86 (849)
+.+.|++++|||||++||+|+ |++|+||+..++ .....+. .+...|.+++|||||++||+|+.||+|+|||+. |+
T Consensus 614 h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~--~~~~~~~-~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~ 690 (1249)
T 3sfz_A 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETG--EKLLDIK-AHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGK 690 (1249)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC--CEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred ccccEEEEEECCCCCEEEEEeCCCeEEEEECCCC--CEEEEec-cCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCc
Confidence 458899999999999999998 689999998653 3333333 236789999999999999999999999999996 66
Q ss_pred cceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEE
Q 003087 87 EITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICT 166 (849)
Q Consensus 87 ~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~sv 166 (849)
.+..+..| ...|.+++|+|++... .+++++.||+|++||+.++.... ++. +|...|+++
T Consensus 691 ~~~~~~~~----~~~v~~~~~~~~~~~~-----~l~sg~~d~~v~vwd~~~~~~~~-----------~~~-~h~~~v~~~ 749 (1249)
T 3sfz_A 691 LVHTYDEH----SEQVNCCHFTNKSNHL-----LLATGSNDFFLKLWDLNQKECRN-----------TMF-GHTNSVNHC 749 (1249)
T ss_dssp EEEEEECC----SSCEEEEEECSSSSCC-----EEEEEETTSCEEEEETTSSSEEE-----------EEC-CCSSCEEEE
T ss_pred eEEEEcCC----CCcEEEEEEecCCCce-----EEEEEeCCCeEEEEECCCcchhh-----------eec-CCCCCEEEE
Confidence 66665543 3579999998843211 26677999999999998766432 233 346679999
Q ss_pred EEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCc--------------------------------ccce--
Q 003087 167 DYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLEL--------------------------------EQLY-- 212 (849)
Q Consensus 167 afsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~--------------------------------~~l~-- 212 (849)
+|+|+|++|++++.|++ |++|++..+... ..+.
T Consensus 750 ~~sp~~~~l~s~s~dg~-------------v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~ 816 (1249)
T 3sfz_A 750 RFSPDDELLASCSADGT-------------LRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVA 816 (1249)
T ss_dssp EECSSTTEEEEEESSSE-------------EEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEE
T ss_pred EEecCCCEEEEEECCCe-------------EEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEE
Confidence 99999999999999975 667766432100 0000
Q ss_pred --------eccccceee-ccCCCccccccceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccC
Q 003087 213 --------TTQIEGLYC-EPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLF 283 (849)
Q Consensus 213 --------~~~~~~~~~-~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~ 283 (849)
.....+... ...+ |...|.+++|||+|+++|+++.||+|++|++.++.. +..+.
T Consensus 817 ~~~~v~~~d~~~~~~~~~~~~~--~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~-~~~~~-------------- 879 (1249)
T 3sfz_A 817 AKNKVLLFDIHTSGLLAEIHTG--HHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLK-VADCR-------------- 879 (1249)
T ss_dssp ETTEEEEEETTTCCEEEEEECS--SSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEE-EEEEC--------------
T ss_pred cCCcEEEEEecCCCceeEEcCC--CCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCce-eeecC--------------
Confidence 000000111 1124 778999999999999999999999999999998643 22322
Q ss_pred CCCCCCCCCcEEEEEecCCE-EEEEEeCCcEEEEEecCC
Q 003087 284 DGRTKPISDITDFAWWSDNI-LILARKSSIITMIDVLSG 321 (849)
Q Consensus 284 ~~~~~~~~~v~~vaws~D~~-la~a~~dgti~lwdl~~~ 321 (849)
.|...|.+++|+|||. +++++.||+|++|++.++
T Consensus 880 ----~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~ 914 (1249)
T 3sfz_A 880 ----GHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKV 914 (1249)
T ss_dssp ----CCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHH
T ss_pred ----CCccceEEEEECCCCCEEEEEeCCCeEEEEEcccc
Confidence 3557899999999985 788999999999998754
No 73
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.94 E-value=4.4e-25 Score=235.86 Aligned_cols=241 Identities=10% Similarity=0.041 Sum_probs=182.0
Q ss_pred cccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCC-CcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCCc
Q 003087 9 KTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDY-QEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANGE 86 (849)
Q Consensus 9 ~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~-~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~ 86 (849)
..+.|.+++|+|||++||+++ ++.|++|+..+.. ..+...+. .+...|.+++| ++++|++++.||+|++|| .++
T Consensus 58 ~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d-~~~ 133 (313)
T 3odt_A 58 GQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLI-GHQGNVCSLSF--QDGVVISGSWDKTAKVWK-EGS 133 (313)
T ss_dssp CSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEEC-CCSSCEEEEEE--ETTEEEEEETTSEEEEEE-TTE
T ss_pred CCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchh-hcccCEEEEEe--cCCEEEEEeCCCCEEEEc-CCc
Confidence 357899999999999999998 6799999976432 12222332 23678999999 789999999999999999 666
Q ss_pred cceecccccccccccEEEEEecC-CcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEE
Q 003087 87 EITRFTNKHLKVSLPIIGLIAQD-ETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVIC 165 (849)
Q Consensus 87 ~~~~l~~~~~~~~~~V~~l~fs~-~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~s 165 (849)
.+..+..+. ..|.++.|.| ++. .+++++.||.|++||.. ... ..+.+.+...|.+
T Consensus 134 ~~~~~~~~~----~~v~~~~~~~~~~~-------~l~~~~~d~~i~i~d~~--~~~-----------~~~~~~~~~~i~~ 189 (313)
T 3odt_A 134 LVYNLQAHN----ASVWDAKVVSFSEN-------KFLTASADKTIKLWQND--KVI-----------KTFSGIHNDVVRH 189 (313)
T ss_dssp EEEEEECCS----SCEEEEEEEETTTT-------EEEEEETTSCEEEEETT--EEE-----------EEECSSCSSCEEE
T ss_pred EEEecccCC----CceeEEEEccCCCC-------EEEEEECCCCEEEEecC--ceE-----------EEEeccCcccEEE
Confidence 555554432 5788898865 332 36777999999999932 221 1233335667999
Q ss_pred EEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEE
Q 003087 166 TDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVA 245 (849)
Q Consensus 166 vafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LA 245 (849)
++|+|+|+ +++++.++ .|++|++..+. .+. ...+ |...|.+++|+||| .|+
T Consensus 190 ~~~~~~~~-~~~~~~dg-------------~i~i~d~~~~~---~~~---------~~~~--~~~~i~~~~~~~~~-~l~ 240 (313)
T 3odt_A 190 LAVVDDGH-FISCSNDG-------------LIKLVDMHTGD---VLR---------TYEG--HESFVYCIKLLPNG-DIV 240 (313)
T ss_dssp EEEEETTE-EEEEETTS-------------EEEEEETTTCC---EEE---------EEEC--CSSCEEEEEECTTS-CEE
T ss_pred EEEcCCCe-EEEccCCC-------------eEEEEECCchh---hhh---------hhhc--CCceEEEEEEecCC-CEE
Confidence 99999999 77888886 38999987642 111 1223 77899999999999 588
Q ss_pred EEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCEEEEEEeCCcEEEEEecCCcccc
Q 003087 246 TSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNILILARKSSIITMIDVLSGLKVK 325 (849)
Q Consensus 246 s~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~la~a~~dgti~lwdl~~~~~l~ 325 (849)
+++.||+|++||+.+++. +..+. .+...|.+++|+||+.+++++.||+|+||++.+++.+.
T Consensus 241 ~~~~dg~v~iwd~~~~~~-~~~~~------------------~~~~~i~~~~~~~~~~~~~~~~dg~i~iw~~~~~~~~~ 301 (313)
T 3odt_A 241 SCGEDRTVRIWSKENGSL-KQVIT------------------LPAISIWSVDCMSNGDIIVGSSDNLVRIFSQEKSRWAS 301 (313)
T ss_dssp EEETTSEEEEECTTTCCE-EEEEE------------------CSSSCEEEEEECTTSCEEEEETTSCEEEEESCGGGCCC
T ss_pred EEecCCEEEEEECCCCce-eEEEe------------------ccCceEEEEEEccCCCEEEEeCCCcEEEEeCCCCceee
Confidence 999999999999988754 33332 23357899999999999999999999999999877443
No 74
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.94 E-value=2.8e-25 Score=242.31 Aligned_cols=264 Identities=11% Similarity=0.072 Sum_probs=176.3
Q ss_pred cccceEEEEEcCC---CCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecC
Q 003087 9 KTKKQVSLFISPR---GERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKAN 84 (849)
Q Consensus 9 ~~~~v~slafSPd---G~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~ 84 (849)
+.+.|.+|+|||| |++||+|+ |++|+||+...........+. .+...|.+++|||||++||+|+.||+|++||+.
T Consensus 38 h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~ 116 (368)
T 3mmy_A 38 PDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQ-MHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLS 116 (368)
T ss_dssp CSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred CCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEec-cccCCEEEEEECcCCCEEEEEcCCCcEEEEEcC
Confidence 4588999999999 69999998 689999998652222112232 246789999999999999999999999999998
Q ss_pred CccceecccccccccccEEEEEe--cCCcccccccceeEEEEeCCCcEEEEEecCCCCccccccc---------------
Q 003087 85 GEEITRFTNKHLKVSLPIIGLIA--QDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSAS--------------- 147 (849)
Q Consensus 85 g~~~~~l~~~~~~~~~~V~~l~f--s~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~--------------- 147 (849)
+.....+..+ ...|.++.| ++++. .|++++.||+|++||+.++.....+...
T Consensus 117 ~~~~~~~~~~----~~~v~~~~~~~~~~~~-------~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (368)
T 3mmy_A 117 SNQAIQIAQH----DAPVKTIHWIKAPNYS-------CVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVV 185 (368)
T ss_dssp TTEEEEEEEC----SSCEEEEEEEECSSCE-------EEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEE
T ss_pred CCCceeeccc----cCceEEEEEEeCCCCC-------EEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEE
Confidence 6554444332 357999999 55543 3667799999999999876543322100
Q ss_pred -----------ccCCc---ceeccccCCceEEEEEcCCCce----EEEEecCCCCccccCCCCCCceeeEEEecCCcCcc
Q 003087 148 -----------ASSSG---LTLRRQFPQNVICTDYHPELSL----LSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELE 209 (849)
Q Consensus 148 -----------~~~~~---~~l~~~~~~~V~svafsPdg~l----Las~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~ 209 (849)
+.... ..+.......+.++++.+++.. +++++.++ .|++|++.......
T Consensus 186 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg-------------~i~i~~~~~~~~~~ 252 (368)
T 3mmy_A 186 ATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEG-------------RVAIHYINPPNPAK 252 (368)
T ss_dssp EEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTS-------------EEEEEESSCSCHHH
T ss_pred EeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCC-------------cEEEEecCCCCccc
Confidence 00000 0011111234566666666554 77777775 38899987642111
Q ss_pred cceeccc---cceeeccCCCccccccceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCC
Q 003087 210 QLYTTQI---EGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGR 286 (849)
Q Consensus 210 ~l~~~~~---~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~ 286 (849)
.+..... .+......+ |...|.+++|||||++||+++.||+|++||+.++++ +..+.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~----------------- 312 (368)
T 3mmy_A 253 DNFTFKCHRSNGTNTSAPQ--DIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTK-LKTSE----------------- 312 (368)
T ss_dssp HSEEEECSEEC----CCCE--EECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEE-EEECC-----------------
T ss_pred cceeeeeeecccccccccc--cccceEEEEEecCCCEEEEEccCCeEEEEECCCCcE-EEEec-----------------
Confidence 1111100 000000111 444799999999999999999999999999998754 33332
Q ss_pred CCCCCCcEEEEEecCCE-EEEEEeCCcEEEEEe
Q 003087 287 TKPISDITDFAWWSDNI-LILARKSSIITMIDV 318 (849)
Q Consensus 287 ~~~~~~v~~vaws~D~~-la~a~~dgti~lwdl 318 (849)
.|...|.+++|+|||. |++++.||..+.|++
T Consensus 313 -~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~ 344 (368)
T 3mmy_A 313 -QLDQPISACCFNHNGNIFAYASSYDWSKGHEF 344 (368)
T ss_dssp -CCSSCEEEEEECTTSSCEEEEECCCSTTCGGG
T ss_pred -CCCCCceEEEECCCCCeEEEEecccccccccc
Confidence 3456799999999986 788888885554443
No 75
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.94 E-value=8.3e-25 Score=233.66 Aligned_cols=238 Identities=11% Similarity=0.092 Sum_probs=179.7
Q ss_pred ccccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCC-
Q 003087 8 RKTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANG- 85 (849)
Q Consensus 8 ~~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g- 85 (849)
.+.+.|.+++| |||++||+|+ |+.|++|+..+. .....+. .+...|.+++|||||++|++|+.||+|++|++..
T Consensus 16 ~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~--~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~ 91 (313)
T 3odt_A 16 GHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQ--WLGTVVY-TGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFAT 91 (313)
T ss_dssp CCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSS--EEEEEEE-ECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCC
T ss_pred CCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCC--EEEEEee-cCCccEEEEEECCCCCEEEEecCCCeEEEEEeeec
Confidence 35588999999 9999999998 689999997542 2222222 2467899999999999999999999999999853
Q ss_pred ---ccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCc
Q 003087 86 ---EEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQN 162 (849)
Q Consensus 86 ---~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 162 (849)
+.+..+..+ ...|.++.|.++ .+++++.||+|++|| .+.... .+. .+...
T Consensus 92 ~~~~~~~~~~~~----~~~i~~~~~~~~---------~l~~~~~d~~i~~~d--~~~~~~-----------~~~-~~~~~ 144 (313)
T 3odt_A 92 SGEDPLYTLIGH----QGNVCSLSFQDG---------VVISGSWDKTAKVWK--EGSLVY-----------NLQ-AHNAS 144 (313)
T ss_dssp TTSCC-CEECCC----SSCEEEEEEETT---------EEEEEETTSEEEEEE--TTEEEE-----------EEE-CCSSC
T ss_pred CCCCcccchhhc----ccCEEEEEecCC---------EEEEEeCCCCEEEEc--CCcEEE-----------ecc-cCCCc
Confidence 233444332 357889998322 367779999999999 222211 233 34567
Q ss_pred eEEEEEcC-CCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCC
Q 003087 163 VICTDYHP-ELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQG 241 (849)
Q Consensus 163 V~svafsP-dg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG 241 (849)
|.+++|+| +++++++++.+++ |++|+.... +. .+. .. |...|.+++|+|+|
T Consensus 145 v~~~~~~~~~~~~l~~~~~d~~-------------i~i~d~~~~-----~~------~~~--~~--~~~~i~~~~~~~~~ 196 (313)
T 3odt_A 145 VWDAKVVSFSENKFLTASADKT-------------IKLWQNDKV-----IK------TFS--GI--HNDVVRHLAVVDDG 196 (313)
T ss_dssp EEEEEEEETTTTEEEEEETTSC-------------EEEEETTEE-----EE------EEC--SS--CSSCEEEEEEEETT
T ss_pred eeEEEEccCCCCEEEEEECCCC-------------EEEEecCce-----EE------EEe--cc--CcccEEEEEEcCCC
Confidence 99999999 9999999998863 899983221 11 111 11 56789999999999
Q ss_pred CEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCEEEEEEeCCcEEEEEecCC
Q 003087 242 KFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNILILARKSSIITMIDVLSG 321 (849)
Q Consensus 242 ~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~la~a~~dgti~lwdl~~~ 321 (849)
+ +++++.||+|++||+.+++. +..+. .|...|.+++|+||+.+++++.||+|++||+.++
T Consensus 197 ~-~~~~~~dg~i~i~d~~~~~~-~~~~~------------------~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~ 256 (313)
T 3odt_A 197 H-FISCSNDGLIKLVDMHTGDV-LRTYE------------------GHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENG 256 (313)
T ss_dssp E-EEEEETTSEEEEEETTTCCE-EEEEE------------------CCSSCEEEEEECTTSCEEEEETTSEEEEECTTTC
T ss_pred e-EEEccCCCeEEEEECCchhh-hhhhh------------------cCCceEEEEEEecCCCEEEEecCCEEEEEECCCC
Confidence 9 99999999999999997654 33332 2446799999999999999999999999999988
Q ss_pred ccc
Q 003087 322 LKV 324 (849)
Q Consensus 322 ~~l 324 (849)
+.+
T Consensus 257 ~~~ 259 (313)
T 3odt_A 257 SLK 259 (313)
T ss_dssp CEE
T ss_pred cee
Confidence 743
No 76
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.94 E-value=6.2e-25 Score=236.70 Aligned_cols=211 Identities=11% Similarity=0.084 Sum_probs=156.7
Q ss_pred CCCCEEEEEECCCCCEEEEEeCCCcEEEEecCC---ccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCc
Q 003087 53 GLGASIYGAWSESHDVLGIVDDTHTVYFFKANG---EEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGF 129 (849)
Q Consensus 53 ~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g---~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~ 129 (849)
|...|++++|||||++||+|+.||+|+|||+.+ +.+.++.+| ..+|.+|+|+++.. + ..|++++.||+
T Consensus 8 h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH----~~~V~~v~~s~~~~--g---~~l~s~s~D~~ 78 (297)
T 2pm7_B 8 HNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGH----EGPVWRVDWAHPKF--G---TILASCSYDGK 78 (297)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCC----SSCEEEEEECCGGG--C---SEEEEEETTTE
T ss_pred CcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccc----cCCeEEEEecCCCc--C---CEEEEEcCCCE
Confidence 367899999999999999999999999999964 344555443 36799999975311 0 13777899999
Q ss_pred EEEEEecCCCCcccccccccCCcceeccccCCceEEEEEcCC--CceEEEEecCCCCccccCCCCCCceeeEEEecCCcC
Q 003087 130 LHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPE--LSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLE 207 (849)
Q Consensus 130 v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPd--g~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~ 207 (849)
|++||+.++..... ..+. .|...|++++|+|+ |++||+++.|++ |++|++.....
T Consensus 79 v~iWd~~~~~~~~~---------~~~~-~h~~~v~~v~~~p~~~g~~l~s~s~d~~-------------v~~wd~~~~~~ 135 (297)
T 2pm7_B 79 VMIWKEENGRWSQI---------AVHA-VHSASVNSVQWAPHEYGPMLLVASSDGK-------------VSVVEFKENGT 135 (297)
T ss_dssp EEEEEBSSSCBCCC---------EEEC-CCSSCEEEEEECCGGGCSEEEEEETTSE-------------EEEEEBCSSSC
T ss_pred EEEEEcCCCceEEE---------EEee-cCCCceeEEEeCcCCCCcEEEEEECCCc-------------EEEEEecCCCc
Confidence 99999986543221 1233 34567999999998 899999999973 89999876421
Q ss_pred cccceeccccceeeccCCCccccccceEEEccC-------------CCEEEEEeCCCcEEEEecCCCccccccccccccc
Q 003087 208 LEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQ-------------GKFVATSDTNGCLYIFEMDKDNFSLSKFACGERF 274 (849)
Q Consensus 208 ~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPD-------------G~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~ 274 (849)
.... ...+ |...|.+++|+|+ |++|||++.||+|+|||+.+... .+....
T Consensus 136 ~~~~----------~~~~--h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~---~~~~~~-- 198 (297)
T 2pm7_B 136 TSPI----------IIDA--HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ---TYVLES-- 198 (297)
T ss_dssp BCCE----------EEEC--CSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTT---EEEEEE--
T ss_pred eeee----------eeec--ccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCc---eEEEEE--
Confidence 1110 1123 7889999999997 68999999999999999986532 110000
Q ss_pred ccccccccCCCCCCCCCCcEEEEEecCC----EEEEEEeCCcEEEEEecCCc
Q 003087 275 DLQVADSLFDGRTKPISDITDFAWWSDN----ILILARKSSIITMIDVLSGL 322 (849)
Q Consensus 275 ~~~~~~~l~~~~~~~~~~v~~vaws~D~----~la~a~~dgti~lwdl~~~~ 322 (849)
.+ .+|...|.+++|+|++ .+|+++.||+|+|||+.+..
T Consensus 199 ------~l----~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~ 240 (297)
T 2pm7_B 199 ------TL----EGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQ 240 (297)
T ss_dssp ------EE----CCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTT
T ss_pred ------Ee----cCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCC
Confidence 01 1466789999999984 47899999999999998753
No 77
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1e-25 Score=260.51 Aligned_cols=197 Identities=7% Similarity=0.043 Sum_probs=147.8
Q ss_pred ccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCC----CCEEEEEECCCCCEEEEEeCCCcEEEEecC
Q 003087 10 TKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGL----GASIYGAWSESHDVLGIVDDTHTVYFFKAN 84 (849)
Q Consensus 10 ~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~----~~v~~vafSPDG~~LAs~~~dgtIrlWd~~ 84 (849)
-..|++++|||||++||+++ +++|+||+... .+..+. ++. ..|.+++|||||++||+|+.||+|+|||+.
T Consensus 85 ~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~----~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~ 159 (588)
T 2j04_A 85 VCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK----MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIR 159 (588)
T ss_dssp SCCEEEEEECSSSSCEEEEETTSCEEEEETTE----EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECC
T ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc----eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECC
Confidence 46799999999999999998 68999998431 233333 221 259999999999999999999999999998
Q ss_pred Cccc--------eecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceec
Q 003087 85 GEEI--------TRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLR 156 (849)
Q Consensus 85 g~~~--------~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~ 156 (849)
++.+ .++..+..++...|.+++|+|++ . ++++.|++|++|++..+..... ..++.
T Consensus 160 ~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-L--------aass~D~tVrlWd~~~~~~~~~--------~~tL~ 222 (588)
T 2j04_A 160 KNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-L--------VAALSNNSVFSMTVSASSHQPV--------SRMIQ 222 (588)
T ss_dssp CCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-E--------EEEETTCCEEEECCCSSSSCCC--------EEEEE
T ss_pred CCccccccceeeeeeecccccccccEEEEEEcCCc-E--------EEEeCCCeEEEEECCCCccccc--------eeeec
Confidence 6642 44432222234689999999977 2 2347899999999976553211 01243
Q ss_pred cccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEE
Q 003087 157 RQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVL 236 (849)
Q Consensus 157 ~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~va 236 (849)
++|...|.+|+|| |+.||+++ ++ +|++|++.++. +.. ...| |+..|+.|+
T Consensus 223 ~~h~~~V~svaFs--g~~LASa~-~~-------------tIkLWd~~~~~----~~~--------~~~g--h~~~V~~va 272 (588)
T 2j04_A 223 NASRRKITDLKIV--DYKVVLTC-PG-------------YVHKIDLKNYS----ISS--------LKTG--SLENFHIIP 272 (588)
T ss_dssp CCCSSCCCCEEEE--TTEEEEEC-SS-------------EEEEEETTTTE----EEE--------EECS--CCSCCCEEE
T ss_pred ccccCcEEEEEEE--CCEEEEEe-CC-------------eEEEEECCCCe----EEE--------EEcC--CCceEEEEE
Confidence 3445679999999 68898886 45 39999988742 100 0115 889999999
Q ss_pred E--ccCCCEEEEEeCCCcEEEEecC
Q 003087 237 I--SPQGKFVATSDTNGCLYIFEMD 259 (849)
Q Consensus 237 f--SPDG~~LAs~s~Dgtv~LWd~~ 259 (849)
| ||||+.||+++.||+ +||..+
T Consensus 273 ~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 273 LNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp ETTCSSCEEEEECSSCEE-EEEESS
T ss_pred eeeCCCCCEEEEEcCCCC-EEEeec
Confidence 9 999999999999999 999974
No 78
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.94 E-value=5.6e-25 Score=244.26 Aligned_cols=269 Identities=11% Similarity=0.059 Sum_probs=186.6
Q ss_pred ccccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCC----CcceeeeeecCCCCEEEEEECCC----C---CEEEEEeCC
Q 003087 8 RKTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDY----QEPCGIFNCTGLGASIYGAWSES----H---DVLGIVDDT 75 (849)
Q Consensus 8 ~~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~----~~~~~~~~~~~~~~v~~vafSPD----G---~~LAs~~~d 75 (849)
.+.+.|.+|+|+| ++||+|+ |++|+||+..... ......+. .+...|.+++|+|+ | ++||+++.|
T Consensus 14 ~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~d 90 (397)
T 1sq9_A 14 AHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHF-VHKSGLHHVDVLQAIERDAFELCLVATTSFS 90 (397)
T ss_dssp CSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEE-CCTTCEEEEEEEEEEETTTEEEEEEEEEETT
T ss_pred hhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEe-cCCCcEEEEEEecccccCCccccEEEEEcCC
Confidence 3568999999999 7999997 6899999987532 01233333 23678999999999 9 999999999
Q ss_pred CcEEEEecCC-cc-----ceecccccccc--cccEEEEEec----CCccccccccee-EEEEeCCCcEEEEEecC-----
Q 003087 76 HTVYFFKANG-EE-----ITRFTNKHLKV--SLPIIGLIAQ----DETDVQRSCLCS-FTVFTSDGFLHQIEISQ----- 137 (849)
Q Consensus 76 gtIrlWd~~g-~~-----~~~l~~~~~~~--~~~V~~l~fs----~~~~~~~s~~~~-~~~~s~Dg~v~lw~~~~----- 137 (849)
|+|++||+.+ +. +..+..+. .. ...|.+++|+ |++. . |++++.||.|++|++.+
T Consensus 91 g~i~iw~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~-------~~l~~~~~dg~i~iwd~~~~~~~~ 162 (397)
T 1sq9_A 91 GDLLFYRITREDETKKVIFEKLDLLD-SDMKKHSFWALKWGASNDRLLS-------HRLVATDVKGTTYIWKFHPFADES 162 (397)
T ss_dssp SCEEEEEEEECTTTCCEEEEEECCSC-TTGGGSCEEEEEEECCC----C-------EEEEEEETTSCEEEEEEESSSSHH
T ss_pred CCEEEEEccCCcccccccceeecccc-cccCCCcEEEEEEeeccCCCCc-------eEEEEEeCCCcEEEEeCCcccccc
Confidence 9999999974 43 44544331 11 2579999998 6443 3 66778999999999987
Q ss_pred -CCCcccccccccCCcceec------cccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCccc
Q 003087 138 -DPSASISSASASSSGLTLR------RQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQ 210 (849)
Q Consensus 138 -~~~~~~~~~~~~~~~~~l~------~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~ 210 (849)
+....+. ...++. ..+...|.+++|+|+| +|++++.++ .|++|++.... .
T Consensus 163 ~~~~~~~~------~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg-------------~i~i~d~~~~~---~ 219 (397)
T 1sq9_A 163 NSLTLNWS------PTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNG-------------TVQISELSTLR---P 219 (397)
T ss_dssp HHTTTCCC------CEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTS-------------EEEEEETTTTE---E
T ss_pred ccceeecc------CcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCC-------------cEEEEECCCCc---e
Confidence 4433210 001232 1345579999999999 999888886 38999987642 1
Q ss_pred ceeccccceeeccCCCcc---ccccceEEEccCCCEEEEEeCC---CcEEEEecCCCcccccccccccccccccccccCC
Q 003087 211 LYTTQIEGLYCEPKGHEV---QLAHPKVLISPQGKFVATSDTN---GCLYIFEMDKDNFSLSKFACGERFDLQVADSLFD 284 (849)
Q Consensus 211 l~~~~~~~~~~~~~g~~h---~~~V~~vafSPDG~~LAs~s~D---gtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~ 284 (849)
+. .+....+ | ...|.+++|+|||++||+++.| |+|++||+.+.+. +..+.......... +.
T Consensus 220 ~~------~~~~~~~--h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~-~~~~~~~~~~~~~~---~~- 286 (397)
T 1sq9_A 220 LY------NFESQHS--MINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGER-IGSLSVPTHSSQAS---LG- 286 (397)
T ss_dssp EE------EEECCC-----CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCE-EEEECBC-----------C-
T ss_pred eE------EEecccc--ccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcc-cceeccCccccccc---cc-
Confidence 11 1111112 5 6789999999999999999999 9999999987754 33332100000000 00
Q ss_pred CCCCCCCCcEEEEEecCCE-EEEEEeCCcEEEEEecCCccc
Q 003087 285 GRTKPISDITDFAWWSDNI-LILARKSSIITMIDVLSGLKV 324 (849)
Q Consensus 285 ~~~~~~~~v~~vaws~D~~-la~a~~dgti~lwdl~~~~~l 324 (849)
...|...|.+++|+||+. +++++.||+|+|||+.+++.+
T Consensus 287 -~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 326 (397)
T 1sq9_A 287 -EFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERI 326 (397)
T ss_dssp -CBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEE
T ss_pred -ccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCcee
Confidence 001456799999999885 778899999999999988743
No 79
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.94 E-value=3.7e-25 Score=248.10 Aligned_cols=250 Identities=13% Similarity=0.122 Sum_probs=182.0
Q ss_pred cccceEEEEEcC-CCCeEEEEe-CCeEEEEecCCCCC-----cceeeeeecCCCCEEEEEECCCC-CEEEEEeCCCcEEE
Q 003087 9 KTKKQVSLFISP-RGERVAVAA-VNQVTILQKDDDYQ-----EPCGIFNCTGLGASIYGAWSESH-DVLGIVDDTHTVYF 80 (849)
Q Consensus 9 ~~~~v~slafSP-dG~~LAsas-~~~i~iw~~~~~~~-----~~~~~~~~~~~~~v~~vafSPDG-~~LAs~~~dgtIrl 80 (849)
+.+.|.+++|+| ||++||+|+ |++|+||+...+.. .+...+.. +...|.+++|+|+| ++|++|+.||+|++
T Consensus 80 h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~p~~~~~l~s~~~dg~i~i 158 (402)
T 2aq5_A 80 HTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEG-HTKRVGIVAWHPTAQNVLLSAGCDNVILV 158 (402)
T ss_dssp CSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEEC-CSSCEEEEEECSSBTTEEEEEETTSCEEE
T ss_pred CCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecC-CCCeEEEEEECcCCCCEEEEEcCCCEEEE
Confidence 457899999999 999999998 68999999765321 22333332 36789999999999 69999999999999
Q ss_pred EecC-Cccceecc-cccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCccee-cc
Q 003087 81 FKAN-GEEITRFT-NKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTL-RR 157 (849)
Q Consensus 81 Wd~~-g~~~~~l~-~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l-~~ 157 (849)
||+. |+.+..+. ..| ...|.+++|+|++. .|++++.||+|++||+.++..... + .+
T Consensus 159 wd~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~-------~l~~~~~d~~i~iwd~~~~~~~~~-----------~~~~ 217 (402)
T 2aq5_A 159 WDVGTGAAVLTLGPDVH---PDTIYSVDWSRDGA-------LICTSCRDKRVRVIEPRKGTVVAE-----------KDRP 217 (402)
T ss_dssp EETTTTEEEEEECTTTC---CSCEEEEEECTTSS-------CEEEEETTSEEEEEETTTTEEEEE-----------EECS
T ss_pred EECCCCCccEEEecCCC---CCceEEEEECCCCC-------EEEEEecCCcEEEEeCCCCceeee-----------eccC
Confidence 9997 55555552 222 35799999998654 366779999999999987654322 2 22
Q ss_pred ccCCceEEEEEcCCCceEEEE---ecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccce
Q 003087 158 QFPQNVICTDYHPELSLLSVV---SNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPK 234 (849)
Q Consensus 158 ~~~~~V~svafsPdg~lLas~---g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~ 234 (849)
|....+.+++|+|+|++|++| +.++ .|++|++........... .+ |...|..
T Consensus 218 ~~~~~~~~~~~~~~~~~l~~g~~~~~d~-------------~i~iwd~~~~~~~~~~~~----------~~--~~~~v~~ 272 (402)
T 2aq5_A 218 HEGTRPVHAVFVSEGKILTTGFSRMSER-------------QVALWDTKHLEEPLSLQE----------LD--TSSGVLL 272 (402)
T ss_dssp SCSSSCCEEEECSTTEEEEEEECTTCCE-------------EEEEEETTBCSSCSEEEE----------CC--CCSSCEE
T ss_pred CCCCcceEEEEcCCCcEEEEeccCCCCc-------------eEEEEcCccccCCceEEe----------cc--CCCceeE
Confidence 322248999999999999887 4454 489999876421111111 12 5568999
Q ss_pred EEEccCCCEEEEE-eCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCEEEEEEeCCcE
Q 003087 235 VLISPQGKFVATS-DTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNILILARKSSII 313 (849)
Q Consensus 235 vafSPDG~~LAs~-s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~la~a~~dgti 313 (849)
++|||||++|+++ +.||+|++|++.+++..+..+.. + .+...|.+++|+||+.+++ +.++.+
T Consensus 273 ~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~-----~-----------~~~~~v~~~~~sp~~~~~~-s~~~~~ 335 (402)
T 2aq5_A 273 PFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSM-----F-----------SSKESQRGMGYMPKRGLEV-NKCEIA 335 (402)
T ss_dssp EEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEE-----E-----------CCSSCCSEEEECCGGGSCG-GGTEEE
T ss_pred EEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecc-----c-----------ccCCcccceEEecccccce-ecceeE
Confidence 9999999999754 57999999999976421222221 0 1335789999999997643 467899
Q ss_pred EEEEecCCc
Q 003087 314 TMIDVLSGL 322 (849)
Q Consensus 314 ~lwdl~~~~ 322 (849)
++|++.+++
T Consensus 336 ~~~~l~~~~ 344 (402)
T 2aq5_A 336 RFYKLHERK 344 (402)
T ss_dssp EEEEEETTE
T ss_pred EEEEcCCCc
Confidence 999999865
No 80
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.94 E-value=3.4e-25 Score=245.95 Aligned_cols=278 Identities=10% Similarity=0.092 Sum_probs=184.0
Q ss_pred cccceEEEEEcCC----C---CeEEEEe-CCeEEEEecCCCCCcc---eeeeeecC----CCCEEEEEEC----CCCCE-
Q 003087 9 KTKKQVSLFISPR----G---ERVAVAA-VNQVTILQKDDDYQEP---CGIFNCTG----LGASIYGAWS----ESHDV- 68 (849)
Q Consensus 9 ~~~~v~slafSPd----G---~~LAsas-~~~i~iw~~~~~~~~~---~~~~~~~~----~~~v~~vafS----PDG~~- 68 (849)
+...|.+++|+|+ | ++||+++ +++|++|+...+.... ...+..+. ...|.+++|+ |||++
T Consensus 61 h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 140 (397)
T 1sq9_A 61 HKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHR 140 (397)
T ss_dssp CTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEE
T ss_pred CCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceE
Confidence 4478999999999 9 9999997 6899999976432100 22222211 2789999999 99999
Q ss_pred EEEEeCCCcEEEEecCC-------ccce-----ecccc---cccccccEEEEEecCCcccccccceeEEEEeCCCcEEEE
Q 003087 69 LGIVDDTHTVYFFKANG-------EEIT-----RFTNK---HLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQI 133 (849)
Q Consensus 69 LAs~~~dgtIrlWd~~g-------~~~~-----~l~~~---~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw 133 (849)
|++|+.||+|++||+.. +.+. .+... ...+...|.+++|+|++ . +++++.||.|++|
T Consensus 141 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~-------l~~~~~dg~i~i~ 212 (397)
T 1sq9_A 141 LVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-L-------IATGFNNGTVQIS 212 (397)
T ss_dssp EEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-E-------EEEECTTSEEEEE
T ss_pred EEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-e-------EEEEeCCCcEEEE
Confidence 99999999999999865 3333 33210 00123568899998865 2 6677899999999
Q ss_pred EecCCCCcccccccccCCcceecc--cc---CCceEEEEEcCCCceEEEEecC---CCCccccCCCCCCceeeEEEecCC
Q 003087 134 EISQDPSASISSASASSSGLTLRR--QF---PQNVICTDYHPELSLLSVVSNT---DTSSLTSSGNSGPCCISLWRRCHN 205 (849)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~l~~--~~---~~~V~svafsPdg~lLas~g~d---~t~~~~~~~~~G~~~I~lW~~~~~ 205 (849)
|+.++..... +.+ .| ...|.+++|+|+|++|++++.| + .|++|++...
T Consensus 213 d~~~~~~~~~-----------~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g-------------~i~i~d~~~~ 268 (397)
T 1sq9_A 213 ELSTLRPLYN-----------FESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFG-------------CITLYETEFG 268 (397)
T ss_dssp ETTTTEEEEE-----------EECCC---CCCCCEEEEEECSSTTEEEEEEEETTEE-------------EEEEEETTTC
T ss_pred ECCCCceeEE-----------EeccccccccCCccceEEECCCCCEEEEEecCCCCc-------------eEEEEECCCC
Confidence 9986554322 222 14 5579999999999999999888 5 3899998764
Q ss_pred cCcccceeccc-cceeeccCCCccccccceEEEccCCCEEEEEeCCCcEEEEecCCCccccccccccccc-ccccccccC
Q 003087 206 LELEQLYTTQI-EGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERF-DLQVADSLF 283 (849)
Q Consensus 206 ~~~~~l~~~~~-~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~-~~~~~~~l~ 283 (849)
.....+..... .... .....|...|.+++|+|||++||+++.||+|++||+.+.+. +..+...... .+ ..+...
T Consensus 269 ~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~-~~~~~~ 344 (397)
T 1sq9_A 269 ERIGSLSVPTHSSQAS--LGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKER-ITTLNMHCDDIEI-EEDILA 344 (397)
T ss_dssp CEEEEECBC----------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE-EEEEECCGGGCSS-GGGCCC
T ss_pred cccceeccCccccccc--ccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCce-eEEEecccCcccc-hhhhhc
Confidence 21111110000 0000 00111667999999999999999999999999999988754 4444310000 00 000000
Q ss_pred CC---CCCCCCCcEEEEEecCC-----------EEEEEEeCCcEEEEEecCCc
Q 003087 284 DG---RTKPISDITDFAWWSDN-----------ILILARKSSIITMIDVLSGL 322 (849)
Q Consensus 284 ~~---~~~~~~~v~~vaws~D~-----------~la~a~~dgti~lwdl~~~~ 322 (849)
.. ...|...|.+++|+||+ .+++++.||+|+||++.+|+
T Consensus 345 g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 345 VDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp BCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred cccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 00 00125789999999996 68889999999999999874
No 81
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.93 E-value=8.1e-25 Score=256.80 Aligned_cols=275 Identities=12% Similarity=0.037 Sum_probs=195.7
Q ss_pred cccceEEEEEcCCCCeEEEEeCCeEEEEecCCCCC--cceeeeeecCCCC-EEEEEECC--CCCEEEEEeCCCcEEEEec
Q 003087 9 KTKKQVSLFISPRGERVAVAAVNQVTILQKDDDYQ--EPCGIFNCTGLGA-SIYGAWSE--SHDVLGIVDDTHTVYFFKA 83 (849)
Q Consensus 9 ~~~~v~slafSPdG~~LAsas~~~i~iw~~~~~~~--~~~~~~~~~~~~~-v~~vafSP--DG~~LAs~~~dgtIrlWd~ 83 (849)
.++.|.+++|||||++||+++++.|+||+..++.. .....+.. +... |.+++||| ||++||+|+.||+|+|||+
T Consensus 17 ~~~~v~~~~~spdg~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~-h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~ 95 (615)
T 1pgu_A 17 QRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTG-HGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGW 95 (615)
T ss_dssp CTTCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECT-TTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEE
T ss_pred ccCceeEEEECCCCCEEEEecCCeEEEEECCCCCCccccceEEec-CCCceEEEEEECcCCCCCEEEEecCCCEEEEEeC
Confidence 56889999999999999999999999999764310 23333332 3567 99999999 9999999999999999999
Q ss_pred C-C--------ccceecccccccccccEEEEEecCCccccc--c----------------------------------cc
Q 003087 84 N-G--------EEITRFTNKHLKVSLPIIGLIAQDETDVQR--S----------------------------------CL 118 (849)
Q Consensus 84 ~-g--------~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~--s----------------------------------~~ 118 (849)
. | +.+..+..+ ...|.+++|+|++.... + .+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~ 171 (615)
T 1pgu_A 96 TFDKESNSVEVNVKSEFQVL----AGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQS 171 (615)
T ss_dssp EEEGGGTEEEEEEEEEEECC----SSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSS
T ss_pred CCCcccccccccccchhhcc----cccEEEEEEeCCCCEEEEeccCCCCccEEEEEECCCcceeeecCCccEEEEEECCC
Confidence 4 4 333333322 35688888887543211 1 11
Q ss_pred --eeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCC---ceEEEEEcCC-CceEEEEecCCCCccccCCCC
Q 003087 119 --CSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQ---NVICTDYHPE-LSLLSVVSNTDTSSLTSSGNS 192 (849)
Q Consensus 119 --~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~V~svafsPd-g~lLas~g~d~t~~~~~~~~~ 192 (849)
..+++++.||+|++||+.++.... ++.+ |.. .|.+++|+|+ |++|++++.+++
T Consensus 172 ~~~~l~~~~~d~~v~vwd~~~~~~~~-----------~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~--------- 230 (615)
T 1pgu_A 172 RPMRSMTVGDDGSVVFYQGPPFKFSA-----------SDRT-HHKQGSFVRDVEFSPDSGEFVITVGSDRK--------- 230 (615)
T ss_dssp SSCEEEEEETTTEEEEEETTTBEEEE-----------EECS-SSCTTCCEEEEEECSTTCCEEEEEETTCC---------
T ss_pred CCcEEEEEeCCCcEEEEeCCCcceee-----------eecc-cCCCCceEEEEEECCCCCCEEEEEeCCCe---------
Confidence 157888999999999987654432 2333 345 7999999999 999999998863
Q ss_pred CCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEEeCCCcEEEEecCCCccccccccccc
Q 003087 193 GPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGE 272 (849)
Q Consensus 193 G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~ 272 (849)
|++|++..+. .+.... ....+ |...|.+++|+ ||++|++++.||+|++||+.+++. +..+....
T Consensus 231 ----i~vwd~~~~~---~~~~~~-----~~~~~--~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~-~~~~~~~~ 294 (615)
T 1pgu_A 231 ----ISCFDGKSGE---FLKYIE-----DDQEP--VQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKC-VQKWTLDK 294 (615)
T ss_dssp ----EEEEETTTCC---EEEECC-----BTTBC--CCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEE-EEEEECCT
T ss_pred ----EEEEECCCCC---EeEEec-----ccccc--cCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcE-EEEEcCCC
Confidence 8999987642 111100 00003 78899999999 999999999999999999997754 33433211
Q ss_pred ccccccccccCCCCCCCCCCcEEEEEecCCEEEEEEeCCcEEEEEecCCccccccCCCCCCeEEEEEe
Q 003087 273 RFDLQVADSLFDGRTKPISDITDFAWWSDNILILARKSSIITMIDVLSGLKVKETDPKLRGHVFLLES 340 (849)
Q Consensus 273 ~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~la~a~~dgti~lwdl~~~~~l~~~~~~~~g~~~~Le~ 340 (849)
......+..+.|+.++.+++++.||.|++||+.+++.+.. -..|.+.+..+..
T Consensus 295 --------------~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~-~~~~~~~v~~~~~ 347 (615)
T 1pgu_A 295 --------------QQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKT-ISGHNKGITALTV 347 (615)
T ss_dssp --------------TCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEE-ECCCSSCEEEEET
T ss_pred --------------CcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEE-EeCCCCCEEEEEe
Confidence 0122457888887666789999999999999988664331 2234555554444
No 82
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.1e-24 Score=248.46 Aligned_cols=266 Identities=8% Similarity=0.051 Sum_probs=183.5
Q ss_pred cceEEEEEcCCCCeEEEEeCCeEEEEecCCCCC-cceeeeee--------------------------------------
Q 003087 11 KKQVSLFISPRGERVAVAAVNQVTILQKDDDYQ-EPCGIFNC-------------------------------------- 51 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas~~~i~iw~~~~~~~-~~~~~~~~-------------------------------------- 51 (849)
..+..|+|||||++|++++++.|.+|+..++.. ..+..+..
T Consensus 5 ~p~~~v~~s~dg~~l~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSI 84 (450)
T ss_dssp CCCCEEEECSSSSEEEEEETTEEEEEEEETTTEEEEEEEEECCC------------------------------------
T ss_pred ccEEEEEecCCCCEEEEEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCccc
Confidence 357889999999999988899999999765320 02222220
Q ss_pred ---------------cCCCCEEEEEECCCCCEE-EEEeCCCcEEEEecC---CccceecccccccccccEEEEEecCCcc
Q 003087 52 ---------------TGLGASIYGAWSESHDVL-GIVDDTHTVYFFKAN---GEEITRFTNKHLKVSLPIIGLIAQDETD 112 (849)
Q Consensus 52 ---------------~~~~~v~~vafSPDG~~L-As~~~dgtIrlWd~~---g~~~~~l~~~~~~~~~~V~~l~fs~~~~ 112 (849)
.+.+.|++++|||||++| |+|+.||+|+|||+. |+.+..+..+ .+...|.+++|+|++.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~ 162 (450)
T 2vdu_B 85 KRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRF--CFSKRPNAISIAEDDT 162 (450)
T ss_dssp ---------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEE--ECSSCEEEEEECTTSS
T ss_pred cccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecc--cCCCCceEEEEcCCCC
Confidence 012269999999999997 899999999999987 4444444321 1235789999998654
Q ss_pred cccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEcCC---CceEEEEecCCCCccccC
Q 003087 113 VQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPE---LSLLSVVSNTDTSSLTSS 189 (849)
Q Consensus 113 ~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPd---g~lLas~g~d~t~~~~~~ 189 (849)
.|++++.||.+++|++..+...... ...+. +|...|.+++|+|+ |++|++++.|++
T Consensus 163 -------~l~~~~~~g~v~~~~~~~~~~~~~~-------~~~~~-~h~~~v~~~~~sp~~~~~~~l~s~~~d~~------ 221 (450)
T 2vdu_B 163 -------TVIIADKFGDVYSIDINSIPEEKFT-------QEPIL-GHVSMLTDVHLIKDSDGHQFIITSDRDEH------ 221 (450)
T ss_dssp -------EEEEEETTSEEEEEETTSCCCSSCC-------CCCSE-ECSSCEEEEEEEECTTSCEEEEEEETTSC------
T ss_pred -------EEEEEeCCCcEEEEecCCccccccc-------ceeee-cccCceEEEEEcCCCCCCcEEEEEcCCCc------
Confidence 3666789999999999776543200 01233 34567999999999 999999998863
Q ss_pred CCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccc
Q 003087 190 GNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFA 269 (849)
Q Consensus 190 ~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~ 269 (849)
|++|++..+.....+ ..+ |...|.+++|| ||++||+++.||+|+|||+.++++ +..+.
T Consensus 222 -------i~vwd~~~~~~~~~~-----------~~~--h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~-~~~~~ 279 (450)
T 2vdu_B 222 -------IKISHYPQCFIVDKW-----------LFG--HKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKN-LSTFD 279 (450)
T ss_dssp -------EEEEEESCTTCEEEE-----------CCC--CSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCE-EEEEE
T ss_pred -------EEEEECCCCceeeee-----------ecC--CCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcE-eeeec
Confidence 899998764211110 234 78899999999 999999999999999999998764 44443
Q ss_pred ccccccc------ccccccCCCC-CCCCCCcEEEEEecCCE-EEEEE-eCCcEEEEEe--cCC
Q 003087 270 CGERFDL------QVADSLFDGR-TKPISDITDFAWWSDNI-LILAR-KSSIITMIDV--LSG 321 (849)
Q Consensus 270 ~~~~~~~------~~~~~l~~~~-~~~~~~v~~vaws~D~~-la~a~-~dgti~lwdl--~~~ 321 (849)
....... ..+..+.++. ......|.+++|+||+. +++++ .+|+|+||++ .++
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~ 342 (450)
T 2vdu_B 280 YNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQK 342 (450)
T ss_dssp CHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSST
T ss_pred chhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCC
Confidence 2110000 0000000000 01234688999999986 55666 7999999999 544
No 83
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.93 E-value=2e-24 Score=235.77 Aligned_cols=272 Identities=13% Similarity=0.115 Sum_probs=188.4
Q ss_pred ccccceEEEEEcCC---CC--eEEEEeCCeEEEEecCCCCCcceeeeee----cCCCCEEEEEECCC----CCEEEEEeC
Q 003087 8 RKTKKQVSLFISPR---GE--RVAVAAVNQVTILQKDDDYQEPCGIFNC----TGLGASIYGAWSES----HDVLGIVDD 74 (849)
Q Consensus 8 ~~~~~v~slafSPd---G~--~LAsas~~~i~iw~~~~~~~~~~~~~~~----~~~~~v~~vafSPD----G~~LAs~~~ 74 (849)
.+.+.|.+++|+|+ |+ ++|+++++.|+||+...+ .....+.. .+...|.+++|||+ |++||+|+.
T Consensus 16 ~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~ 93 (366)
T 3k26_A 16 DHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQ--GEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGS 93 (366)
T ss_dssp TTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGG--GCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEET
T ss_pred CCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCC--cEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecC
Confidence 35689999999994 54 667777889999997642 22333321 12467999999999 779999999
Q ss_pred CCcEEEEecC-CccceecccccccccccEEEEEecC-CcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCc
Q 003087 75 THTVYFFKAN-GEEITRFTNKHLKVSLPIIGLIAQD-ETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSG 152 (849)
Q Consensus 75 dgtIrlWd~~-g~~~~~l~~~~~~~~~~V~~l~fs~-~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~ 152 (849)
||+|++||+. ++.+..+..+ ...|.+++|+| ++. .|++++.||+|++||+.++.....+.
T Consensus 94 dg~i~v~d~~~~~~~~~~~~~----~~~i~~~~~~~~~~~-------~l~s~~~dg~i~iwd~~~~~~~~~~~------- 155 (366)
T 3k26_A 94 RGIIRIINPITMQCIKHYVGH----GNAINELKFHPRDPN-------LLLSVSKDHALRLWNIQTDTLVAIFG------- 155 (366)
T ss_dssp TCEEEEECTTTCCEEEEEESC----CSCEEEEEECSSCTT-------EEEEEETTSCEEEEETTTTEEEEEEC-------
T ss_pred CCEEEEEEchhceEeeeecCC----CCcEEEEEECCCCCC-------EEEEEeCCCeEEEEEeecCeEEEEec-------
Confidence 9999999987 6655555433 35799999988 543 36677999999999998765433221
Q ss_pred ceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccce-----ecc-----------c
Q 003087 153 LTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLY-----TTQ-----------I 216 (849)
Q Consensus 153 ~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~-----~~~-----------~ 216 (849)
.+. .|...|.+++|+|+|++|++++.|++ |++|++........+. ... .
T Consensus 156 -~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~-------------i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (366)
T 3k26_A 156 -GVE-GHRDEVLSADYDLLGEKIMSCGMDHS-------------LKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIH 220 (366)
T ss_dssp -STT-SCSSCEEEEEECTTSSEEEEEETTSC-------------EEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEEC
T ss_pred -ccc-cccCceeEEEECCCCCEEEEecCCCC-------------EEEEECCCCccccccceeEEecCCCCcccccceeec
Confidence 012 34567999999999999999998863 8999987641110000 000 0
Q ss_pred cceeeccCCCccccccceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEE
Q 003087 217 EGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDF 296 (849)
Q Consensus 217 ~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v 296 (849)
...+....+ |...|.+++|+ |++|++++.||+|++||+.+....+............ ...+ ..+...|..+
T Consensus 221 ~~~~~~~~~--~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~v~~~ 291 (366)
T 3k26_A 221 FPDFSTRDI--HRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTI-LGRF----DYSQCDIWYM 291 (366)
T ss_dssp CCSEEECSS--CSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEE-EEEE----ECSSCCSSCC
T ss_pred cCccccccC--CcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchhe-eccc----cccCCcEEEE
Confidence 011122234 78899999998 8899999999999999998764422222111100000 0001 1244568889
Q ss_pred EEecC--CE-EEEEEeCCcEEEEEecCCcc
Q 003087 297 AWWSD--NI-LILARKSSIITMIDVLSGLK 323 (849)
Q Consensus 297 aws~D--~~-la~a~~dgti~lwdl~~~~~ 323 (849)
+|+|| +. +++++.||.|+|||+.+++.
T Consensus 292 ~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~ 321 (366)
T 3k26_A 292 RFSMDFWQKMLALGNQVGKLYVWDLEVEDP 321 (366)
T ss_dssp CCEECTTSSEEEEECTTSCEEEEECCSSSG
T ss_pred EEcCCCCCcEEEEEecCCcEEEEECCCCCC
Confidence 99998 75 67889999999999998863
No 84
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.93 E-value=1.4e-24 Score=243.76 Aligned_cols=243 Identities=14% Similarity=0.130 Sum_probs=177.3
Q ss_pred ccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecC-C-c
Q 003087 10 TKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKAN-G-E 86 (849)
Q Consensus 10 ~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~-g-~ 86 (849)
.+.|.+++|||||++||+|+ ++.|+||+...+ .....+. .+...|.+++| ++++|++|+.||+|++||+. + .
T Consensus 134 ~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~-~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~ 208 (401)
T 4aez_A 134 STYVASVKWSHDGSFLSVGLGNGLVDIYDVESQ--TKLRTMA-GHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANH 208 (401)
T ss_dssp TCCEEEEEECTTSSEEEEEETTSCEEEEETTTC--CEEEEEC-CCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSC
T ss_pred CCCEEEEEECCCCCEEEEECCCCeEEEEECcCC--eEEEEec-CCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcc
Confidence 46799999999999999997 689999997643 3333333 23678999999 67899999999999999997 3 3
Q ss_pred cceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEE
Q 003087 87 EITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICT 166 (849)
Q Consensus 87 ~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~sv 166 (849)
.+..+..+ ...|.+++|+|++. .|++++.||+|++||+.++.... ++. .+...|.++
T Consensus 209 ~~~~~~~~----~~~v~~~~~~~~~~-------~l~s~~~d~~v~iwd~~~~~~~~-----------~~~-~~~~~v~~~ 265 (401)
T 4aez_A 209 QIGTLQGH----SSEVCGLAWRSDGL-------QLASGGNDNVVQIWDARSSIPKF-----------TKT-NHNAAVKAV 265 (401)
T ss_dssp EEEEEECC----SSCEEEEEECTTSS-------EEEEEETTSCEEEEETTCSSEEE-----------EEC-CCSSCCCEE
T ss_pred eeeEEcCC----CCCeeEEEEcCCCC-------EEEEEeCCCeEEEccCCCCCccE-----------Eec-CCcceEEEE
Confidence 34444332 35799999998653 36777999999999998654322 233 345679999
Q ss_pred EEcCCCce-EEEEe--cCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCE
Q 003087 167 DYHPELSL-LSVVS--NTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKF 243 (849)
Q Consensus 167 afsPdg~l-Las~g--~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~ 243 (849)
+|+|+|.. +++++ .|+ .|++|++..+. .+.. +. |...|.+++|||+|++
T Consensus 266 ~~~p~~~~ll~~~~gs~d~-------------~i~i~d~~~~~---~~~~------~~------~~~~v~~~~~s~~~~~ 317 (401)
T 4aez_A 266 AWCPWQSNLLATGGGTMDK-------------QIHFWNAATGA---RVNT------VD------AGSQVTSLIWSPHSKE 317 (401)
T ss_dssp EECTTSTTEEEEECCTTTC-------------EEEEEETTTCC---EEEE------EE------CSSCEEEEEECSSSSE
T ss_pred EECCCCCCEEEEecCCCCC-------------EEEEEECCCCC---EEEE------Ee------CCCcEEEEEECCCCCe
Confidence 99998764 45543 344 48999987642 1111 10 4458999999999999
Q ss_pred EEEEe--CCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EEEEEeCCcEEEEEecC
Q 003087 244 VATSD--TNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LILARKSSIITMIDVLS 320 (849)
Q Consensus 244 LAs~s--~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~a~~dgti~lwdl~~ 320 (849)
|++++ .||+|++|++.+... ...+.. ..|...|.+++|+||+. +++++.||+|++|++.+
T Consensus 318 l~~~~g~~dg~i~v~~~~~~~~-~~~~~~----------------~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~ 380 (401)
T 4aez_A 318 IMSTHGFPDNNLSIWSYSSSGL-TKQVDI----------------PAHDTRVLYSALSPDGRILSTAASDENLKFWRVYD 380 (401)
T ss_dssp EEEEECTTTCEEEEEEEETTEE-EEEEEE----------------ECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC
T ss_pred EEEEeecCCCcEEEEecCCccc-eeEEEe----------------cCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence 99954 899999999987533 122111 13456799999999985 77889999999999999
Q ss_pred Ccccc
Q 003087 321 GLKVK 325 (849)
Q Consensus 321 ~~~l~ 325 (849)
++.+.
T Consensus 381 ~~~~~ 385 (401)
T 4aez_A 381 GDHVK 385 (401)
T ss_dssp -----
T ss_pred Ccccc
Confidence 87554
No 85
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.93 E-value=1.3e-24 Score=246.77 Aligned_cols=261 Identities=15% Similarity=0.182 Sum_probs=181.3
Q ss_pred cceEEEEEcCC-CCeEEEEe-CCeEEEEecCCC--------CCcceeeeeecCCCCEEEEEECCCCC-EEEEEeCCCcEE
Q 003087 11 KKQVSLFISPR-GERVAVAA-VNQVTILQKDDD--------YQEPCGIFNCTGLGASIYGAWSESHD-VLGIVDDTHTVY 79 (849)
Q Consensus 11 ~~v~slafSPd-G~~LAsas-~~~i~iw~~~~~--------~~~~~~~~~~~~~~~v~~vafSPDG~-~LAs~~~dgtIr 79 (849)
+.|.+++|+|+ +++||+++ +++|+||+.... ...+...+. .+...+.+++|+|+|+ +|++|+.||+|+
T Consensus 129 ~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 207 (430)
T 2xyi_A 129 GEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLR-GHQKEGYGLSWNPNLNGYLLSASDDHTIC 207 (430)
T ss_dssp SCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEE-CCSSCCCCEEECTTSTTEEEEECTTSCEE
T ss_pred CcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEec-CCCCCeEEEEeCCCCCCeEEEEeCCCeEE
Confidence 78999999997 78999997 689999997641 122233333 2356789999999999 999999999999
Q ss_pred EEecCC-cc-------ceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCC
Q 003087 80 FFKANG-EE-------ITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSS 151 (849)
Q Consensus 80 lWd~~g-~~-------~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~ 151 (849)
||++.. .. ...+. .+...|.+++|+|+.. ..|++++.||.|++||+.++.....
T Consensus 208 vwd~~~~~~~~~~~~~~~~~~----~h~~~v~~v~~~p~~~------~~l~s~~~dg~i~i~d~~~~~~~~~-------- 269 (430)
T 2xyi_A 208 LWDINATPKEHRVIDAKNIFT----GHTAVVEDVAWHLLHE------SLFGSVADDQKLMIWDTRNNNTSKP-------- 269 (430)
T ss_dssp EEETTSCCBGGGEEECSEEEC----CCSSCEEEEEECSSCT------TEEEEEETTSEEEEEETTCSCSSSC--------
T ss_pred EEeCCCCCCCCceeccceeec----CCCCCEeeeEEeCCCC------CEEEEEeCCCeEEEEECCCCCCCcc--------
Confidence 999974 21 11121 2235799999988321 1367779999999999987532111
Q ss_pred cceeccccCCceEEEEEcCCCc-eEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCcccc
Q 003087 152 GLTLRRQFPQNVICTDYHPELS-LLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQL 230 (849)
Q Consensus 152 ~~~l~~~~~~~V~svafsPdg~-lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~ 230 (849)
...+. .|...|++++|+|+|+ +||+|+.|+ .|++|++.... ..+. ...+ |..
T Consensus 270 ~~~~~-~~~~~v~~i~~~p~~~~~l~tg~~dg-------------~v~vwd~~~~~--~~~~---------~~~~--h~~ 322 (430)
T 2xyi_A 270 SHTVD-AHTAEVNCLSFNPYSEFILATGSADK-------------TVALWDLRNLK--LKLH---------SFES--HKD 322 (430)
T ss_dssp SEEEE-CCSSCEEEEEECSSCTTEEEEEETTS-------------EEEEEETTCTT--SCSE---------EEEC--CSS
T ss_pred eeEee-cCCCCeEEEEeCCCCCCEEEEEeCCC-------------eEEEEeCCCCC--CCeE---------Eeec--CCC
Confidence 11233 3456799999999998 688888886 38999987631 1111 1123 778
Q ss_pred ccceEEEccCCC-EEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE--EEEE
Q 003087 231 AHPKVLISPQGK-FVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI--LILA 307 (849)
Q Consensus 231 ~V~~vafSPDG~-~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~--la~a 307 (849)
.|.+|+|||+|+ +||+++.||+|+|||+....... . .. ...+.+. ..+. ....|...|.+++|+|++. ++++
T Consensus 323 ~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~-~-~~-~~~~~~~-~~~~-~~~~h~~~v~~~~~~p~~~~~l~s~ 397 (430)
T 2xyi_A 323 EIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQ-S-TE-DAEDGPP-ELLF-IHGGHTAKISDFSWNPNEPWIICSV 397 (430)
T ss_dssp CEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCC-C-HH-HHHHCCT-TEEE-ECCCCSSCEEEEEECSSSTTEEEEE
T ss_pred CEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCcccc-C-cc-ccccCCc-ceEE-EcCCCCCCceEEEECCCCCCEEEEE
Confidence 999999999995 69999999999999998632100 0 00 0000000 0000 0024556799999999875 6788
Q ss_pred EeCCcEEEEEecCCc
Q 003087 308 RKSSIITMIDVLSGL 322 (849)
Q Consensus 308 ~~dgti~lwdl~~~~ 322 (849)
+.||.|+||++..+.
T Consensus 398 s~dg~i~iw~~~~~~ 412 (430)
T 2xyi_A 398 SEDNIMQVWQMAENV 412 (430)
T ss_dssp ETTSEEEEEEECHHH
T ss_pred ECCCCEEEeEccccc
Confidence 999999999997643
No 86
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.93 E-value=2.6e-24 Score=238.31 Aligned_cols=198 Identities=12% Similarity=0.118 Sum_probs=153.6
Q ss_pred cccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECC--CCCEEEEEeCCCcEEEEecC-
Q 003087 9 KTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSE--SHDVLGIVDDTHTVYFFKAN- 84 (849)
Q Consensus 9 ~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSP--DG~~LAs~~~dgtIrlWd~~- 84 (849)
+.+.|.+++|+|+|+.|++++ |++|+||+...+ .....+.. +...|.+++|+| +|++|++|+.||+|++||+.
T Consensus 153 h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~--~~~~~~~~-h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~ 229 (354)
T 2pbi_B 153 HTNYLSACSFTNSDMQILTASGDGTCALWDVESG--QLLQSFHG-HGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRS 229 (354)
T ss_dssp CSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC--CEEEEEEC-CSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTT
T ss_pred cCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCC--eEEEEEcC-CCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCC
Confidence 346799999999999999998 689999998653 34444432 356789999987 68999999999999999986
Q ss_pred CccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceE
Q 003087 85 GEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVI 164 (849)
Q Consensus 85 g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~ 164 (849)
|+.+..+..| ...|.+++|+|++. .|++++.||+|++||+..+.....+. ...+...+.
T Consensus 230 ~~~~~~~~~h----~~~v~~v~~~p~~~-------~l~s~s~D~~v~lwd~~~~~~~~~~~----------~~~~~~~~~ 288 (354)
T 2pbi_B 230 GQCVQAFETH----ESDVNSVRYYPSGD-------AFASGSDDATCRLYDLRADREVAIYS----------KESIIFGAS 288 (354)
T ss_dssp CCEEEEECCC----SSCEEEEEECTTSS-------EEEEEETTSCEEEEETTTTEEEEEEC----------CTTCCSCEE
T ss_pred CcEEEEecCC----CCCeEEEEEeCCCC-------EEEEEeCCCeEEEEECCCCcEEEEEc----------CCCccccee
Confidence 6555555443 25799999998653 36777999999999998654432211 001223689
Q ss_pred EEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEE
Q 003087 165 CTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFV 244 (849)
Q Consensus 165 svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~L 244 (849)
+++|||+|++|++++.|++ |++|++..+. .+ ....+ |...|.+++|||||++|
T Consensus 289 ~~~~s~~g~~l~~g~~d~~-------------i~vwd~~~~~---~~---------~~l~~--h~~~v~~l~~spdg~~l 341 (354)
T 2pbi_B 289 SVDFSLSGRLLFAGYNDYT-------------INVWDVLKGS---RV---------SILFG--HENRVSTLRVSPDGTAF 341 (354)
T ss_dssp EEEECTTSSEEEEEETTSC-------------EEEEETTTCS---EE---------EEECC--CSSCEEEEEECTTSSCE
T ss_pred EEEEeCCCCEEEEEECCCc-------------EEEEECCCCc---eE---------EEEEC--CCCcEEEEEECCCCCEE
Confidence 9999999999999998863 8999986542 11 11235 88899999999999999
Q ss_pred EEEeCCCcEEEEe
Q 003087 245 ATSDTNGCLYIFE 257 (849)
Q Consensus 245 As~s~Dgtv~LWd 257 (849)
||++.||+|+||+
T Consensus 342 ~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 342 CSGSWDHTLRVWA 354 (354)
T ss_dssp EEEETTSEEEEEC
T ss_pred EEEcCCCCEEecC
Confidence 9999999999996
No 87
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.93 E-value=5e-24 Score=239.21 Aligned_cols=236 Identities=13% Similarity=0.132 Sum_probs=172.6
Q ss_pred eEEEEEcCCCCeEEEEeCCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecC-Cccceec
Q 003087 13 QVSLFISPRGERVAVAAVNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKAN-GEEITRF 91 (849)
Q Consensus 13 v~slafSPdG~~LAsas~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~-g~~~~~l 91 (849)
+.+++||+ +.++|++.+++|+||+..++ .....+...+...|.+++|||||++||+|+.||+|++||+. ++.+..+
T Consensus 96 ~~~~~~s~-~~l~~~~~d~~v~lw~~~~~--~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 172 (401)
T 4aez_A 96 LNLLDWSN-LNVVAVALERNVYVWNADSG--SVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTM 172 (401)
T ss_dssp CBCEEECT-TSEEEEEETTEEEEEETTTC--CEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred EEEEeecC-CCEEEEECCCeEEEeeCCCC--cEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEe
Confidence 33477776 34555556899999998653 33333333246789999999999999999999999999997 5555555
Q ss_pred ccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEcCC
Q 003087 92 TNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPE 171 (849)
Q Consensus 92 ~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPd 171 (849)
..+ ...|.++.|.+. .+++++.||+|++||+....... ..+. .|...|.+++|+|+
T Consensus 173 ~~~----~~~v~~~~~~~~---------~l~~~~~dg~i~i~d~~~~~~~~----------~~~~-~~~~~v~~~~~~~~ 228 (401)
T 4aez_A 173 AGH----QARVGCLSWNRH---------VLSSGSRSGAIHHHDVRIANHQI----------GTLQ-GHSSEVCGLAWRSD 228 (401)
T ss_dssp CCC----SSCEEEEEEETT---------EEEEEETTSEEEEEETTSSSCEE----------EEEE-CCSSCEEEEEECTT
T ss_pred cCC----CCceEEEEECCC---------EEEEEcCCCCEEEEecccCccee----------eEEc-CCCCCeeEEEEcCC
Confidence 443 257889998432 36777999999999997533211 1233 34567999999999
Q ss_pred CceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCC-CEEEEEe--
Q 003087 172 LSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQG-KFVATSD-- 248 (849)
Q Consensus 172 g~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG-~~LAs~s-- 248 (849)
|++|++++.|++ |++|++.... .+. ...+ |...|.+++|+|+| .++++++
T Consensus 229 ~~~l~s~~~d~~-------------v~iwd~~~~~---~~~---------~~~~--~~~~v~~~~~~p~~~~ll~~~~gs 281 (401)
T 4aez_A 229 GLQLASGGNDNV-------------VQIWDARSSI---PKF---------TKTN--HNAAVKAVAWCPWQSNLLATGGGT 281 (401)
T ss_dssp SSEEEEEETTSC-------------EEEEETTCSS---EEE---------EECC--CSSCCCEEEECTTSTTEEEEECCT
T ss_pred CCEEEEEeCCCe-------------EEEccCCCCC---ccE---------EecC--CcceEEEEEECCCCCCEEEEecCC
Confidence 999999999863 8999987642 111 1223 77899999999987 5566655
Q ss_pred CCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EEEEE--eCCcEEEEEecCCc
Q 003087 249 TNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LILAR--KSSIITMIDVLSGL 322 (849)
Q Consensus 249 ~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~a~--~dgti~lwdl~~~~ 322 (849)
.||+|++||+.+++. +..+. +...|.+++|+|++. +++++ .||.|+||++.+++
T Consensus 282 ~d~~i~i~d~~~~~~-~~~~~-------------------~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~ 338 (401)
T 4aez_A 282 MDKQIHFWNAATGAR-VNTVD-------------------AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSG 338 (401)
T ss_dssp TTCEEEEEETTTCCE-EEEEE-------------------CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTE
T ss_pred CCCEEEEEECCCCCE-EEEEe-------------------CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCcc
Confidence 799999999998754 33322 224689999999986 45533 79999999999865
No 88
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.93 E-value=3.5e-25 Score=248.84 Aligned_cols=261 Identities=11% Similarity=0.064 Sum_probs=160.3
Q ss_pred eEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeee-ee-cCCCCEEEEEECC--------CCCEEEEEeCCCcEEEE
Q 003087 13 QVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIF-NC-TGLGASIYGAWSE--------SHDVLGIVDDTHTVYFF 81 (849)
Q Consensus 13 v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~-~~-~~~~~v~~vafSP--------DG~~LAs~~~dgtIrlW 81 (849)
+...+++|++++||+|+ |++|+||+...+........ .. .|.+.|.+|+||| ||++||||+.|+|||||
T Consensus 92 ~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~W 171 (393)
T 4gq1_A 92 GNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIW 171 (393)
T ss_dssp -----CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEE
T ss_pred cceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEE
Confidence 34456778889999998 68999999764311100011 11 2367899999998 99999999999999999
Q ss_pred ecC-CccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCccccccc------c----c-
Q 003087 82 KAN-GEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSAS------A----S- 149 (849)
Q Consensus 82 d~~-g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~------~----~- 149 (849)
|+. +..+..+..++ .+|.+|+|+|+.. ..|++++.||+|++||+.++......... . .
T Consensus 172 d~~~~~~~~~~~~~~----~~v~~v~~~p~~~------~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~ 241 (393)
T 4gq1_A 172 RLTDEGPILAGYPLS----SPGISVQFRPSNP------NQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNT 241 (393)
T ss_dssp EEETTEEEEEEEECS----SCEEEEEEETTEE------EEEEEEETTSEEEEEETTCCC----------CSCCCSEEEES
T ss_pred ECCCCceeeeecCCC----CCcEEEEECCCCC------ceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccc
Confidence 985 55555554444 5789999998542 13677799999999999876542211100 0 0
Q ss_pred ---CCcceeccccCCceEEEEEc-CCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceecc-------ccc
Q 003087 150 ---SSGLTLRRQFPQNVICTDYH-PELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQ-------IEG 218 (849)
Q Consensus 150 ---~~~~~l~~~~~~~V~svafs-Pdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~-------~~~ 218 (849)
....... ++...|.+++|+ |||+.|++++.|++ +++|++..+.....+.... ...
T Consensus 242 ~~~~~~~~~~-~~~~~v~~v~~~~~dg~~l~s~s~d~~-------------i~vwd~~~~~~~~~l~~~~~~~~~~~~~~ 307 (393)
T 4gq1_A 242 LPLVNTCHSS-GIASSLANVRWIGSDGSGILAMCKSGA-------------WLRWNLFANNDYNEISDSTMKLGPKNLLP 307 (393)
T ss_dssp GGGC-------CCSSSCSEEEEETTTTCEEEEECTTSE-------------EEEEEC-------------------CCSC
T ss_pred ccceeeeecc-cccccceeeeeecCCCCEEEEEeCCCC-------------EEEEECccCCCCceEeeecCccccEEEcc
Confidence 0000112 345579999987 89999999988873 8899987653322221000 000
Q ss_pred eeeccCCCccccccceEEEcc--CCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEE
Q 003087 219 LYCEPKGHEVQLAHPKVLISP--QGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDF 296 (849)
Q Consensus 219 ~~~~~~g~~h~~~V~~vafSP--DG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v 296 (849)
...... +...+....|+| ++.++|+++.||+|+|||+.+++. +.... .+..+|.++
T Consensus 308 ~~~~~~---~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~-~~~~~------------------~~~~~V~sv 365 (393)
T 4gq1_A 308 NVQGIS---LFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDS-NSIPI------------------QLGMPIVDF 365 (393)
T ss_dssp SEEEEC---SSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTC-CEEEE------------------ECSSCEEEE
T ss_pred cccccc---ccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcE-EEEec------------------CCCCcEEEE
Confidence 000000 122333444544 566788899999999999998754 22211 234579999
Q ss_pred EEecCCE-EEEEEeCCcEEEEEecC
Q 003087 297 AWWSDNI-LILARKSSIITMIDVLS 320 (849)
Q Consensus 297 aws~D~~-la~a~~dgti~lwdl~~ 320 (849)
+|+|||+ ||+++ ++.+.+|.+.+
T Consensus 366 afspdG~~LA~as-~~Gv~lvrL~g 389 (393)
T 4gq1_A 366 CWHQDGSHLAIAT-EGSVLLTRLMG 389 (393)
T ss_dssp EECTTSSEEEEEE-SSEEEEEEEGG
T ss_pred EEcCCCCEEEEEe-CCCeEEEEEeC
Confidence 9999997 45555 56677887754
No 89
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.92 E-value=6e-24 Score=235.48 Aligned_cols=246 Identities=12% Similarity=0.140 Sum_probs=170.5
Q ss_pred cccceEEEEEcCCCCeEEEEeCCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEE-EEeCCCcEEEEecC-Cc
Q 003087 9 KTKKQVSLFISPRGERVAVAAVNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLG-IVDDTHTVYFFKAN-GE 86 (849)
Q Consensus 9 ~~~~v~slafSPdG~~LAsas~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LA-s~~~dgtIrlWd~~-g~ 86 (849)
+.+.|++|+|||||++||+|+++.++||+.... .. .... ....+..++|+++++.++ +++.|++|+|||.. |+
T Consensus 18 h~~~V~~v~fs~dg~~la~g~~~~~~iw~~~~~--~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~ 92 (355)
T 3vu4_A 18 VSNPVTDYEFNQDQSCLILSTLKSFEIYNVHPV--AH--IMSQ-EMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQ 92 (355)
T ss_dssp -CCCCCEEEECTTSSEEEEECSSEEEEEEETTE--EE--EEEE-ECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTE
T ss_pred CCCceEEEEECCCCCEEEEEcCCEEEEEecCCc--ce--eeee-ecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCc
Confidence 457899999999999999999888999996531 11 1111 123577899999999996 57778999999986 66
Q ss_pred cceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCC-CCcccccccccCCcceeccccCCceEE
Q 003087 87 EITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQD-PSASISSASASSSGLTLRRQFPQNVIC 165 (849)
Q Consensus 87 ~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~V~s 165 (849)
.+..+. +...|.++.|+++..+ + ..|+.|++|++.++ +.... +.. ....
T Consensus 93 ~~~~~~-----~~~~v~~v~~~~~~~~---------~-~~~~~i~i~d~~~~~~~~~~-----------~~~----~~~~ 142 (355)
T 3vu4_A 93 DVSRIK-----VDAPVKDLFLSREFIV---------V-SYGDVISVFKFGNPWKRITD-----------DIR----FGGV 142 (355)
T ss_dssp EEEEEE-----CSSCEEEEEECSSEEE---------E-EETTEEEEEESSTTCCBSSC-----------CEE----EEEE
T ss_pred EEEEEE-----CCCceEEEEEcCCEEE---------E-EEcCEEEEEECCCCceeeEE-----------ecc----CCce
Confidence 655543 2357999999875432 2 45889999999876 33222 111 3455
Q ss_pred EEEcCCCceEEEE-ecCCCCccccCCCCCCceeeEEEecCCcCccc----ceeccccceeeccCCCccccccceEEEccC
Q 003087 166 TDYHPELSLLSVV-SNTDTSSLTSSGNSGPCCISLWRRCHNLELEQ----LYTTQIEGLYCEPKGHEVQLAHPKVLISPQ 240 (849)
Q Consensus 166 vafsPdg~lLas~-g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~----l~~~~~~~~~~~~~g~~h~~~V~~vafSPD 240 (849)
++++| +.+|++ |..+ | .|++|++..+..... ..............+ |...|.+|+||||
T Consensus 143 ~~~s~--~~la~~sg~~~----------g--~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~--h~~~v~~~~~s~~ 206 (355)
T 3vu4_A 143 CEFSN--GLLVYSNEFNL----------G--QIHITKLQSSGSATTQDQGVQQKAILGKGVLIKA--HTNPIKMVRLNRK 206 (355)
T ss_dssp EEEET--TEEEEEESSCT----------T--CEEEEECCC------------------CCEEECC--CSSCEEEEEECTT
T ss_pred EEEEc--cEEEEeCCCcC----------c--EEEEEECCCCCccccccccccccccCcccEEEEc--cCCceEEEEECCC
Confidence 67777 677765 3332 3 389999876421000 000000000122345 8899999999999
Q ss_pred CCEEEEEeCCCc-EEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EEEEEeCCcEEEEEe
Q 003087 241 GKFVATSDTNGC-LYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LILARKSSIITMIDV 318 (849)
Q Consensus 241 G~~LAs~s~Dgt-v~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~a~~dgti~lwdl 318 (849)
|++|||++.||+ |+|||+.++++ +..+.. +.|...|.+++|+||+. +++++.||+|+|||+
T Consensus 207 g~~l~s~s~d~~~v~iwd~~~~~~-~~~~~~----------------g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~ 269 (355)
T 3vu4_A 207 SDMVATCSQDGTIIRVFKTEDGVL-VREFRR----------------GLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEI 269 (355)
T ss_dssp SSEEEEEETTCSEEEEEETTTCCE-EEEEEC----------------TTCCSCEEEEEECTTSCEEEEEETTCEEEEEES
T ss_pred CCEEEEEeCCCCEEEEEECCCCcE-EEEEEc----------------CCCCCcEEEEEECCCCCEEEEEECCCEEEEEEc
Confidence 999999999999 99999998754 334320 12557899999999986 778999999999999
Q ss_pred cCCc
Q 003087 319 LSGL 322 (849)
Q Consensus 319 ~~~~ 322 (849)
..+.
T Consensus 270 ~~~~ 273 (355)
T 3vu4_A 270 FNDQ 273 (355)
T ss_dssp SCCS
T ss_pred cCCC
Confidence 7653
No 90
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.92 E-value=6.9e-24 Score=239.29 Aligned_cols=263 Identities=8% Similarity=0.081 Sum_probs=170.3
Q ss_pred cceEEEEEcCCC--CeEEEEe-CCeEEEEecCCCCCc-------------------------------------ceeeee
Q 003087 11 KKQVSLFISPRG--ERVAVAA-VNQVTILQKDDDYQE-------------------------------------PCGIFN 50 (849)
Q Consensus 11 ~~v~slafSPdG--~~LAsas-~~~i~iw~~~~~~~~-------------------------------------~~~~~~ 50 (849)
+.|.+|+|+|+| .+|++++ |++|+||+....... +...+.
T Consensus 94 ~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (447)
T 3dw8_B 94 EKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFA 173 (447)
T ss_dssp CCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEEC
T ss_pred CceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEec
Confidence 679999999999 7888887 789999997531100 000111
Q ss_pred ecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecC-Cccceecc---c-ccccccccEEEEEecCCc-ccccccceeEEEE
Q 003087 51 CTGLGASIYGAWSESHDVLGIVDDTHTVYFFKAN-GEEITRFT---N-KHLKVSLPIIGLIAQDET-DVQRSCLCSFTVF 124 (849)
Q Consensus 51 ~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~-g~~~~~l~---~-~~~~~~~~V~~l~fs~~~-~~~~s~~~~~~~~ 124 (849)
..+...|.+++|||||++||+| .||+|+|||+. +.....+. + ....+...|.+++|+|++ . .|+++
T Consensus 174 ~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-------~l~s~ 245 (447)
T 3dw8_B 174 NAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCN-------TFVYS 245 (447)
T ss_dssp SCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTT-------EEEEE
T ss_pred cCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCc-------EEEEE
Confidence 1236678999999999999999 79999999997 43322211 0 011234679999999865 3 36677
Q ss_pred eCCCcEEEEEecCCCCcccccccccCCcceecccc-----------CCceEEEEEcCCCceEEEEecCCCCccccCCCCC
Q 003087 125 TSDGFLHQIEISQDPSASISSASASSSGLTLRRQF-----------PQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSG 193 (849)
Q Consensus 125 s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~-----------~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G 193 (849)
+.||+|++||+.++..... ....+.++. ...|.+++|+|+|++|++++. +
T Consensus 246 ~~dg~i~iwd~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~----------- 306 (447)
T 3dw8_B 246 SSKGTIRLCDMRASALCDR-------HSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-L----------- 306 (447)
T ss_dssp ETTSCEEEEETTTCSSSCT-------TCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-S-----------
T ss_pred eCCCeEEEEECcCCccccc-------eeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-C-----------
Confidence 9999999999987664110 011222221 137999999999999998877 6
Q ss_pred CceeeEEEecC-CcCcccceeccccceeeccCCCcccc---------------ccceEEEccCCCEEEEEeCCCcEEEEe
Q 003087 194 PCCISLWRRCH-NLELEQLYTTQIEGLYCEPKGHEVQL---------------AHPKVLISPQGKFVATSDTNGCLYIFE 257 (849)
Q Consensus 194 ~~~I~lW~~~~-~~~~~~l~~~~~~~~~~~~~g~~h~~---------------~V~~vafSPDG~~LAs~s~Dgtv~LWd 257 (849)
.|++|++.. +.....+ .+ |.. .+..++|||||++||+++.||+|++||
T Consensus 307 --~v~iwd~~~~~~~~~~~------------~~--~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd 370 (447)
T 3dw8_B 307 --SVKVWDLNMENRPVETY------------QV--HEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFD 370 (447)
T ss_dssp --EEEEEETTCCSSCSCCE------------ES--CGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEE
T ss_pred --eEEEEeCCCCcccccee------------ec--cccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEE
Confidence 389999875 3211111 11 221 134599999999999999999999999
Q ss_pred cCCCccccccccccccccccc---------------ccccCCCCCCCCCCcEEEEEecCCEEEEEEeCCcEEEEEe
Q 003087 258 MDKDNFSLSKFACGERFDLQV---------------ADSLFDGRTKPISDITDFAWWSDNILILARKSSIITMIDV 318 (849)
Q Consensus 258 ~~~~~~~l~~~~~~~~~~~~~---------------~~~l~~~~~~~~~~v~~vaws~D~~la~a~~dgti~lwdl 318 (849)
+.+++. + .+..+.....+. ...+.....++...|..++|+|++.++++...+.+.+|+-
T Consensus 371 ~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~~~~~~~ 444 (447)
T 3dw8_B 371 RNTKRD-I-TLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNNLYIFQD 444 (447)
T ss_dssp TTTCCE-E-EEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSCEEEEEC
T ss_pred cCCCcc-e-eeeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecceeeeecc
Confidence 998743 1 211110000000 0000000012335688999999987555445556888874
No 91
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.92 E-value=9.9e-25 Score=279.17 Aligned_cols=249 Identities=14% Similarity=0.120 Sum_probs=187.7
Q ss_pred cceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCCccce
Q 003087 11 KKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANGEEIT 89 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~~~~ 89 (849)
..+.+++|||+|+++|+|+ ++.|.+|+...+ .....+. .+...|++++|||||++||+++.||+|++||+.+....
T Consensus 962 ~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~--~~~~~~~-~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~ 1038 (1249)
T 3sfz_A 962 AQVSCCCLSPHLEYVAFGDEDGAIKIIELPNN--RVFSSGV-GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV 1038 (1249)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCCEEEETTTT--SCEEECC-CCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEE
T ss_pred CcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCC--ceeeecc-cCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceE
Confidence 5689999999999999997 679999997643 3333332 23668899999999999999999999999999855444
Q ss_pred ecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEc
Q 003087 90 RFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYH 169 (849)
Q Consensus 90 ~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafs 169 (849)
.+..+ ...|.+++|++++ .+++++.||+|++||+.++..... +. .|...|.+++||
T Consensus 1039 ~~~~~----~~~v~~~~~~~~~--------~l~~~~~dg~v~vwd~~~~~~~~~-----------~~-~~~~~v~~~~~s 1094 (1249)
T 3sfz_A 1039 FLQAH----QETVKDFRLLQDS--------RLLSWSFDGTVKVWNVITGRIERD-----------FT-CHQGTVLSCAIS 1094 (1249)
T ss_dssp CCBCC----SSCEEEEEECSSS--------EEEEEESSSEEEEEETTTTCCCEE-----------EE-CCSSCCCCEEEC
T ss_pred EEecC----CCcEEEEEEcCCC--------cEEEEECCCcEEEEECCCCceeEE-----------Ec-ccCCcEEEEEEC
Confidence 44332 3578999998854 366779999999999987765433 33 345679999999
Q ss_pred CCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEEeC
Q 003087 170 PELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDT 249 (849)
Q Consensus 170 Pdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~ 249 (849)
|||++||+++.|++ |++|++.++... ....+ |...|.+++|||||++|||++.
T Consensus 1095 ~d~~~l~s~s~d~~-------------v~iwd~~~~~~~------------~~l~~--h~~~v~~~~~s~dg~~lat~~~ 1147 (1249)
T 3sfz_A 1095 SDATKFSSTSADKT-------------AKIWSFDLLSPL------------HELKG--HNGCVRCSAFSLDGILLATGDD 1147 (1249)
T ss_dssp SSSSSCEEECCSSC-------------CCEECSSSSSCS------------BCCCC--CSSCEEEEEECSSSSEEEEEET
T ss_pred CCCCEEEEEcCCCc-------------EEEEECCCccee------------eeecc--CCCcEEEEEECCCCCEEEEEeC
Confidence 99999999998874 899998764211 12234 7889999999999999999999
Q ss_pred CCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCEEEEEEeCCcEEEEEecCCccc
Q 003087 250 NGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNILILARKSSIITMIDVLSGLKV 324 (849)
Q Consensus 250 Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~la~a~~dgti~lwdl~~~~~l 324 (849)
||+|++||+.+++. +..+..... ......|...|.+++|+|||.++++. +|+|++||+.+++.+
T Consensus 1148 dg~i~vwd~~~~~~-~~~~~~~~~---------~~~~~~~~~~v~~l~fs~dg~~l~s~-~g~v~vwd~~~g~~~ 1211 (1249)
T 3sfz_A 1148 NGEIRIWNVSDGQL-LHSCAPISV---------EEGTATHGGWVTDVCFSPDSKTLVSA-GGYLKWWNVATGDSS 1211 (1249)
T ss_dssp TSCCCEEESSSSCC-CCCCCCCC----------------CCSCCCEEEECTTSSCEEEE-SSSEEEBCSSSCBCC
T ss_pred CCEEEEEECCCCce-EEEeccccc---------cccccccCceEEEEEECCCCCEEEEC-CCeEEEEECCCCcee
Confidence 99999999998754 333211000 00001355679999999999754333 499999999998754
No 92
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.92 E-value=4.4e-24 Score=239.35 Aligned_cols=244 Identities=10% Similarity=0.091 Sum_probs=175.5
Q ss_pred EEEEcCCCCeEEE-Ee-CCeEEEEecCCCCC--cceeeeeecCCCCEEEEEECC-CCCEEEEEeCCCcEEEEecCCc---
Q 003087 15 SLFISPRGERVAV-AA-VNQVTILQKDDDYQ--EPCGIFNCTGLGASIYGAWSE-SHDVLGIVDDTHTVYFFKANGE--- 86 (849)
Q Consensus 15 slafSPdG~~LAs-as-~~~i~iw~~~~~~~--~~~~~~~~~~~~~v~~vafSP-DG~~LAs~~~dgtIrlWd~~g~--- 86 (849)
.++++|+...++. ++ ++.|.||+...... .....+. .+.+.|.+++||| ||++||+|+.||+|+|||+...
T Consensus 39 ~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~-~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~ 117 (402)
T 2aq5_A 39 FCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVC-GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLV 117 (402)
T ss_dssp SEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBC-CCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCS
T ss_pred cEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEe-cCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCc
Confidence 4888988876543 44 68999999753210 1111122 2367899999999 9999999999999999999742
Q ss_pred -----cceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceec-cccC
Q 003087 87 -----EITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLR-RQFP 160 (849)
Q Consensus 87 -----~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~-~~~~ 160 (849)
.+..+..| ...|.+++|+|++. ..+++++.||+|++||+.++..... +. ..|.
T Consensus 118 ~~~~~~~~~~~~h----~~~v~~~~~~p~~~------~~l~s~~~dg~i~iwd~~~~~~~~~-----------~~~~~~~ 176 (402)
T 2aq5_A 118 LPLREPVITLEGH----TKRVGIVAWHPTAQ------NVLLSAGCDNVILVWDVGTGAAVLT-----------LGPDVHP 176 (402)
T ss_dssp SCBCSCSEEEECC----SSCEEEEEECSSBT------TEEEEEETTSCEEEEETTTTEEEEE-----------ECTTTCC
T ss_pred cccCCceEEecCC----CCeEEEEEECcCCC------CEEEEEcCCCEEEEEECCCCCccEE-----------EecCCCC
Confidence 33444333 36799999998652 1366779999999999987654322 31 1356
Q ss_pred CceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccc-cceEEEcc
Q 003087 161 QNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLA-HPKVLISP 239 (849)
Q Consensus 161 ~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~-V~~vafSP 239 (849)
..|.+++|+|+|++|++++.|+ .|++|++..+. .+.. +. .+ |... +.+++|+|
T Consensus 177 ~~v~~~~~~~~~~~l~~~~~d~-------------~i~iwd~~~~~---~~~~------~~--~~--~~~~~~~~~~~~~ 230 (402)
T 2aq5_A 177 DTIYSVDWSRDGALICTSCRDK-------------RVRVIEPRKGT---VVAE------KD--RP--HEGTRPVHAVFVS 230 (402)
T ss_dssp SCEEEEEECTTSSCEEEEETTS-------------EEEEEETTTTE---EEEE------EE--CS--SCSSSCCEEEECS
T ss_pred CceEEEEECCCCCEEEEEecCC-------------cEEEEeCCCCc---eeee------ec--cC--CCCCcceEEEEcC
Confidence 6799999999999999999886 38999987642 1111 10 12 5444 88999999
Q ss_pred CCCEEEEE---eCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EEEE-EeCCcEE
Q 003087 240 QGKFVATS---DTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LILA-RKSSIIT 314 (849)
Q Consensus 240 DG~~LAs~---s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~a-~~dgti~ 314 (849)
||++|+++ +.||+|++||+.+....+.... ..+...+..++|+||+. ++++ +.||+|+
T Consensus 231 ~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~-----------------~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~ 293 (402)
T 2aq5_A 231 EGKILTTGFSRMSERQVALWDTKHLEEPLSLQE-----------------LDTSSGVLLPFFDPDTNIVYLCGKGDSSIR 293 (402)
T ss_dssp TTEEEEEEECTTCCEEEEEEETTBCSSCSEEEE-----------------CCCCSSCEEEEEETTTTEEEEEETTCSCEE
T ss_pred CCcEEEEeccCCCCceEEEEcCccccCCceEEe-----------------ccCCCceeEEEEcCCCCEEEEEEcCCCeEE
Confidence 99999999 8999999999987643111111 12335689999999986 4444 4799999
Q ss_pred EEEecCCcc
Q 003087 315 MIDVLSGLK 323 (849)
Q Consensus 315 lwdl~~~~~ 323 (849)
+|++.+++.
T Consensus 294 i~d~~~~~~ 302 (402)
T 2aq5_A 294 YFEITSEAP 302 (402)
T ss_dssp EEEECSSTT
T ss_pred EEEecCCCc
Confidence 999998873
No 93
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.92 E-value=1.9e-24 Score=235.26 Aligned_cols=207 Identities=12% Similarity=0.043 Sum_probs=153.8
Q ss_pred CCCCEEEEEECCCCCEEEEEeCCCcEEEEecC-Cc--cceecccccccccccEEEEEecCCcccccccceeEEEEeCCCc
Q 003087 53 GLGASIYGAWSESHDVLGIVDDTHTVYFFKAN-GE--EITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGF 129 (849)
Q Consensus 53 ~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~-g~--~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~ 129 (849)
|...|++++|||||++||+|+.|++|+|||+. |+ .+..+.+| ...|.+|+|+++.. + ..|++++.||+
T Consensus 12 H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH----~~~V~~v~~~~~~~--~---~~l~s~s~D~~ 82 (316)
T 3bg1_A 12 HEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGH----EGPVWQVAWAHPMY--G---NILASCSYDRK 82 (316)
T ss_dssp --CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECC----SSCEEEEEECCGGG--S---SCEEEEETTSC
T ss_pred ccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCC----CccEEEEEeCCCCC--C---CEEEEEECCCE
Confidence 46789999999999999999999999999996 43 23344433 35799999975311 0 13777899999
Q ss_pred EEEEEecCCCCcccccccccCCcceeccccCCceEEEEEcCC--CceEEEEecCCCCccccCCCCCCceeeEEEecCCcC
Q 003087 130 LHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPE--LSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLE 207 (849)
Q Consensus 130 v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPd--g~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~ 207 (849)
|++||+.++..... .++. +|...|++++|+|+ |.+||+++.|++ |++|++.....
T Consensus 83 v~iWd~~~~~~~~~---------~~~~-~h~~~V~~v~~~p~~~g~~lasgs~D~~-------------i~lwd~~~~~~ 139 (316)
T 3bg1_A 83 VIIWREENGTWEKS---------HEHA-GHDSSVNSVCWAPHDYGLILACGSSDGA-------------ISLLTYTGEGQ 139 (316)
T ss_dssp EEEECCSSSCCCEE---------EEEC-CCSSCCCEEEECCTTTCSCEEEECSSSC-------------EEEEEECSSSC
T ss_pred EEEEECCCCcceEE---------EEcc-CCCCceEEEEECCCCCCcEEEEEcCCCC-------------EEEEecCCCCC
Confidence 99999986543221 1234 34667999999998 889999998873 89999876421
Q ss_pred cccceeccccceeeccCCCccccccceEEEccC-----------------CCEEEEEeCCCcEEEEecCCCcc--ccccc
Q 003087 208 LEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQ-----------------GKFVATSDTNGCLYIFEMDKDNF--SLSKF 268 (849)
Q Consensus 208 ~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPD-----------------G~~LAs~s~Dgtv~LWd~~~~~~--~l~~~ 268 (849)
... .....+ |...|.+++|+|+ |++|||++.||+|+|||+.+... .+..+
T Consensus 140 ~~~---------~~~~~~--h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l 208 (316)
T 3bg1_A 140 WEV---------KKINNA--HTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKL 208 (316)
T ss_dssp EEE---------CCBTTS--SSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECC
T ss_pred cce---------eeeecc--ccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeec
Confidence 100 011234 8889999999998 58999999999999999975321 01111
Q ss_pred ccccccccccccccCCCCCCCCCCcEEEEEecCC-----EEEEEEeCCcEEEEEecC
Q 003087 269 ACGERFDLQVADSLFDGRTKPISDITDFAWWSDN-----ILILARKSSIITMIDVLS 320 (849)
Q Consensus 269 ~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~-----~la~a~~dgti~lwdl~~ 320 (849)
..|...|.+++|+|++ .+++++.||+|+||++.+
T Consensus 209 ------------------~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~ 247 (316)
T 3bg1_A 209 ------------------EAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD 247 (316)
T ss_dssp ------------------BCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred ------------------ccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccC
Confidence 1356789999999985 588999999999999986
No 94
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.92 E-value=1.1e-23 Score=247.11 Aligned_cols=294 Identities=13% Similarity=0.144 Sum_probs=192.2
Q ss_pred ceEEEEEcCC-CCeEEEEe-CCeEEEEecCCCCCcceeeeee---cCCCCEEEEEECCCCCEEEEEeCCCcEEEEecC-C
Q 003087 12 KQVSLFISPR-GERVAVAA-VNQVTILQKDDDYQEPCGIFNC---TGLGASIYGAWSESHDVLGIVDDTHTVYFFKAN-G 85 (849)
Q Consensus 12 ~v~slafSPd-G~~LAsas-~~~i~iw~~~~~~~~~~~~~~~---~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~-g 85 (849)
.|.+++|+|| |++||+++ ++.|++|+...+ .....+.. .+...|.+++|+ ||++|++++.||+|++||+. +
T Consensus 208 ~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~ 284 (615)
T 1pgu_A 208 FVRDVEFSPDSGEFVITVGSDRKISCFDGKSG--EFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTS 284 (615)
T ss_dssp CEEEEEECSTTCCEEEEEETTCCEEEEETTTC--CEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTT
T ss_pred eEEEEEECCCCCCEEEEEeCCCeEEEEECCCC--CEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCC
Confidence 7999999999 99999997 689999997643 34444411 346789999999 99999999999999999997 6
Q ss_pred ccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCc-------------
Q 003087 86 EEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSG------------- 152 (849)
Q Consensus 86 ~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~------------- 152 (849)
+.+..+..+...+...+.++.|+++ ..+++++.||.|++|++.++.....+. .+.
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~~l~~~~~~g~i~~~d~~~~~~~~~~~----~~~~~v~~~~~~~l~~ 352 (615)
T 1pgu_A 285 KCVQKWTLDKQQLGNQQVGVVATGN--------GRIISLSLDGTLNFYELGHDEVLKTIS----GHNKGITALTVNPLIS 352 (615)
T ss_dssp EEEEEEECCTTCGGGCEEEEEEEET--------TEEEEEETTSCEEEEETTEEEEEEEEC----CCSSCEEEEETTTTEE
T ss_pred cEEEEEcCCCCcccCceeEEEeCCC--------CeEEEEECCCCEEEEECCCCcEEEEEe----CCCCCEEEEEecCcEE
Confidence 6655554432223356777777521 136677899999999987543321111 000
Q ss_pred ---------c---eeccccCCceEEEEEcCCCceEEEEecCCCCccccCCC--------------C-------CCceeeE
Q 003087 153 ---------L---TLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGN--------------S-------GPCCISL 199 (849)
Q Consensus 153 ---------~---~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~--------------~-------G~~~I~l 199 (849)
+ .+...|...|.+++| ++++.|++++.|+++++|.... . ....+.+
T Consensus 353 ~~~dg~i~~w~~~~~~~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 431 (615)
T 1pgu_A 353 GSYDGRIMEWSSSSMHQDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLI 431 (615)
T ss_dssp EETTSCEEETTTTEEECCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEE
T ss_pred ECCCCeEEEEEchhhcCcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEE
Confidence 0 000123445777777 4466677777777666664310 0 1112445
Q ss_pred EEecCCcC----------------cccceeccc-cce----------e--eccCCCccccccceEEEccCCCEEEEEeCC
Q 003087 200 WRRCHNLE----------------LEQLYTTQI-EGL----------Y--CEPKGHEVQLAHPKVLISPQGKFVATSDTN 250 (849)
Q Consensus 200 W~~~~~~~----------------~~~l~~~~~-~~~----------~--~~~~g~~h~~~V~~vafSPDG~~LAs~s~D 250 (849)
|+...+.. ...+..... .+. + ....+ |...|.+++|||||++||+++.|
T Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~g~~l~~~~~d 509 (615)
T 1pgu_A 432 LQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTP--LRAKPSYISISPSETYIAAGDVM 509 (615)
T ss_dssp EETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSC--CSSCEEEEEECTTSSEEEEEETT
T ss_pred EeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCC--ccCceEEEEECCCCCEEEEcCCC
Confidence 54322100 000111100 111 1 22344 78899999999999999999999
Q ss_pred CcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEec----------CCE-EEEEEeCCcEEEEEec
Q 003087 251 GCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWS----------DNI-LILARKSSIITMIDVL 319 (849)
Q Consensus 251 gtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~----------D~~-la~a~~dgti~lwdl~ 319 (849)
|+|++||+.+++. +..+. +.|...|.+++|+| |+. +++++.||+|+|||+.
T Consensus 510 g~i~iw~~~~~~~-~~~~~-----------------~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 571 (615)
T 1pgu_A 510 GKILLYDLQSREV-KTSRW-----------------AFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVK 571 (615)
T ss_dssp SCEEEEETTTTEE-EECCS-----------------CCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESS
T ss_pred CeEEEeeCCCCcc-eeEee-----------------cCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECC
Confidence 9999999988754 22321 12557799999999 875 6788999999999999
Q ss_pred CCccccccCCCCCCeEEEEEec
Q 003087 320 SGLKVKETDPKLRGHVFLLESK 341 (849)
Q Consensus 320 ~~~~l~~~~~~~~g~~~~Le~~ 341 (849)
++......-.+|.+.+..+...
T Consensus 572 ~~~~~~~~~~~h~~~v~~l~~s 593 (615)
T 1pgu_A 572 RPMKIIKALNAHKDGVNNLLWE 593 (615)
T ss_dssp CTTCCEEETTSSTTCEEEEEEE
T ss_pred CCceechhhhcCccceEEEEEc
Confidence 8844433344566666665553
No 95
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.92 E-value=2.6e-23 Score=236.81 Aligned_cols=259 Identities=12% Similarity=0.083 Sum_probs=182.5
Q ss_pred ccccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEEC--CCCCEEEEEeCCCcEEEEecC
Q 003087 8 RKTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWS--ESHDVLGIVDDTHTVYFFKAN 84 (849)
Q Consensus 8 ~~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafS--PDG~~LAs~~~dgtIrlWd~~ 84 (849)
.+.+.|++++|+|++ +||+|+ |++|++|+..++ .....+.. +...|.+++|+ |+|++|++|+.||+|++||+.
T Consensus 160 ~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~--~~~~~~~~-h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~ 235 (464)
T 3v7d_B 160 GHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKG--CCTHVFEG-HNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLP 235 (464)
T ss_dssp CCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTT--EEEEEECC-CSSCEEEEEEEESSSCEEEEEEETTSCEEEEECC
T ss_pred CCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCC--cEEEEECC-CCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCC
Confidence 356889999999999 888887 789999998643 33333332 36789999998 689999999999999999997
Q ss_pred Ccc-ceeccccc-------------------ccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccc
Q 003087 85 GEE-ITRFTNKH-------------------LKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASIS 144 (849)
Q Consensus 85 g~~-~~~l~~~~-------------------~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~ 144 (849)
... ........ .++...|.++... ...+++++.||+|++||+.++....
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---------~~~l~~~~~d~~i~vwd~~~~~~~~-- 304 (464)
T 3v7d_B 236 KESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGH---------GNIVVSGSYDNTLIVWDVAQMKCLY-- 304 (464)
T ss_dssp CCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEE---------TTEEEEEETTSCEEEEETTTTEEEE--
T ss_pred CCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCC---------CCEEEEEeCCCeEEEEECCCCcEEE--
Confidence 432 11110000 0011233333211 1247788999999999998665432
Q ss_pred cccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccC
Q 003087 145 SASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPK 224 (849)
Q Consensus 145 ~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~ 224 (849)
++. .|...|.+++|+|+|+.|++++.|++ |++|++..+. .+ ....
T Consensus 305 ---------~~~-~~~~~v~~~~~~~~~~~l~sg~~dg~-------------i~vwd~~~~~---~~---------~~~~ 349 (464)
T 3v7d_B 305 ---------ILS-GHTDRIYSTIYDHERKRCISASMDTT-------------IRIWDLENGE---LM---------YTLQ 349 (464)
T ss_dssp ---------EEC-CCSSCEEEEEEETTTTEEEEEETTSC-------------EEEEETTTTE---EE---------EEEC
T ss_pred ---------Eec-CCCCCEEEEEEcCCCCEEEEEeCCCc-------------EEEEECCCCc---EE---------EEEe
Confidence 233 34567999999999999999999873 8999987642 11 1223
Q ss_pred CCccccccceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCEE
Q 003087 225 GHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNIL 304 (849)
Q Consensus 225 g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~l 304 (849)
+ |...|.+++|+ |++|++++.||+|++||+.+... .+.. .+...+..++|++++.+
T Consensus 350 ~--h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~---~~~~-----------------~~~~~~~~~~~~~~~~~ 405 (464)
T 3v7d_B 350 G--HTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSR---KFSY-----------------HHTNLSAITTFYVSDNI 405 (464)
T ss_dssp C--CSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCE---EEEE-----------------ECTTCCCEEEEEECSSE
T ss_pred C--CCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCce---eeee-----------------cCCCCccEEEEEeCCCE
Confidence 4 78899999996 68999999999999999997643 2221 01234567889999876
Q ss_pred EEEEeCCcEEEEEecCCccccccCCCCCCeEEEEEe
Q 003087 305 ILARKSSIITMIDVLSGLKVKETDPKLRGHVFLLES 340 (849)
Q Consensus 305 a~a~~dgti~lwdl~~~~~l~~~~~~~~g~~~~Le~ 340 (849)
++++.||+|+|||+.+++.+......+.+.+..+..
T Consensus 406 l~~~~dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~ 441 (464)
T 3v7d_B 406 LVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNF 441 (464)
T ss_dssp EEEEETTEEEEEETTTCCEEESCTTTTCSEEEEEEE
T ss_pred EEEecCCeEEEEECCCCcEEehhhccCCCcEEEEEe
Confidence 655559999999999998664323345566666555
No 96
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.92 E-value=1.4e-23 Score=255.77 Aligned_cols=244 Identities=12% Similarity=0.072 Sum_probs=186.7
Q ss_pred cccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCCc-
Q 003087 9 KTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANGE- 86 (849)
Q Consensus 9 ~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~- 86 (849)
+.+.|.+++|||||++||+++ +++|+||+..++ .....+.. +...|++++|||||++||+|+.||+|++||+.+.
T Consensus 54 ~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~--~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~ 130 (814)
T 3mkq_A 54 TETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG--EKVVDFEA-HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW 130 (814)
T ss_dssp CSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTC--CEEEEEEC-CSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTS
T ss_pred CCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCC--cEEEEEec-CCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCc
Confidence 447899999999999999998 589999997653 33333332 3678999999999999999999999999999743
Q ss_pred c-ceecccccccccccEEEEEecC-CcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceE
Q 003087 87 E-ITRFTNKHLKVSLPIIGLIAQD-ETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVI 164 (849)
Q Consensus 87 ~-~~~l~~~~~~~~~~V~~l~fs~-~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~ 164 (849)
. ...+..+ ...|.+++|+| ++. .|++++.||+|++|++.++.... .+.+++...|.
T Consensus 131 ~~~~~~~~~----~~~v~~~~~~p~~~~-------~l~~~~~dg~v~vwd~~~~~~~~-----------~~~~~~~~~v~ 188 (814)
T 3mkq_A 131 ALEQTFEGH----EHFVMCVAFNPKDPS-------TFASGCLDRTVKVWSLGQSTPNF-----------TLTTGQERGVN 188 (814)
T ss_dssp EEEEEEECC----SSCEEEEEEETTEEE-------EEEEEETTSEEEEEETTCSSCSE-----------EEECCCTTCCC
T ss_pred eEEEEEcCC----CCcEEEEEEEcCCCC-------EEEEEeCCCeEEEEECCCCccee-----------EEecCCCCCEE
Confidence 3 3333322 35799999988 443 36777999999999987654422 23335546799
Q ss_pred EEEEcC--CCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCC
Q 003087 165 CTDYHP--ELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGK 242 (849)
Q Consensus 165 svafsP--dg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~ 242 (849)
+++|+| +|++|++++.++ .|++|++..+. .+. ...+ |...|.+++|||||+
T Consensus 189 ~~~~~~~~~~~~l~~~~~dg-------------~i~~~d~~~~~---~~~---------~~~~--~~~~v~~~~~~~~~~ 241 (814)
T 3mkq_A 189 YVDYYPLPDKPYMITASDDL-------------TIKIWDYQTKS---CVA---------TLEG--HMSNVSFAVFHPTLP 241 (814)
T ss_dssp EEEECCSTTCCEEEEECTTS-------------EEEEEETTTTE---EEE---------EEEC--CSSCEEEEEECSSSS
T ss_pred EEEEEECCCCCEEEEEeCCC-------------EEEEEECCCCc---EEE---------EEcC--CCCCEEEEEEcCCCC
Confidence 999999 999999998886 38999987642 111 1123 777999999999999
Q ss_pred EEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE--EEEEEeCCcEEEEEecC
Q 003087 243 FVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI--LILARKSSIITMIDVLS 320 (849)
Q Consensus 243 ~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~--la~a~~dgti~lwdl~~ 320 (849)
+||+++.||+|++||+.+.+. +..+. .+...+..++|+|++. +++++.++.+.+|++..
T Consensus 242 ~l~~~~~dg~v~vwd~~~~~~-~~~~~------------------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (814)
T 3mkq_A 242 IIISGSEDGTLKIWNSSTYKV-EKTLN------------------VGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGN 302 (814)
T ss_dssp EEEEEETTSCEEEEETTTCSE-EEEEC------------------CSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSC
T ss_pred EEEEEeCCCeEEEEECCCCcE-EEEee------------------cCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCC
Confidence 999999999999999997643 33322 2335789999999986 56667788899999877
Q ss_pred Ccc
Q 003087 321 GLK 323 (849)
Q Consensus 321 ~~~ 323 (849)
+..
T Consensus 303 ~~~ 305 (814)
T 3mkq_A 303 DEP 305 (814)
T ss_dssp CSC
T ss_pred CCc
Confidence 654
No 97
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.92 E-value=1.8e-23 Score=238.17 Aligned_cols=246 Identities=11% Similarity=0.059 Sum_probs=177.2
Q ss_pred EEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecC-Cccceecccc
Q 003087 17 FISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKAN-GEEITRFTNK 94 (849)
Q Consensus 17 afSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~-g~~~~~l~~~ 94 (849)
+++++|++||+|+ |++|++|+...+ .....+. .+.+.|.+++|+|++ +|++|+.||+|++||+. |+.+..+..|
T Consensus 127 ~~~~~~~~l~sgs~dg~i~vwd~~~~--~~~~~~~-~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h 202 (464)
T 3v7d_B 127 CLQFEDNYVITGADDKMIRVYDSINK--KFLLQLS-GHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGH 202 (464)
T ss_dssp EEEEETTEEEEEETTSCEEEEETTTT--EEEEEEC-CCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred EEEECCCEEEEEcCCCcEEEEECCCC--cEEEEEe-CCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCC
Confidence 3445788999998 689999997642 3333333 246789999999999 99999999999999997 6555555433
Q ss_pred cccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCccccccc--c-------cCC---cceeccccCCc
Q 003087 95 HLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSAS--A-------SSS---GLTLRRQFPQN 162 (849)
Q Consensus 95 ~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~--~-------~~~---~~~l~~~~~~~ 162 (849)
...|.+++|++... ...+++++.||+|++|++.++......... . ... ...+. +|...
T Consensus 203 ----~~~v~~l~~~~~~~-----~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 272 (464)
T 3v7d_B 203 ----NSTVRCLDIVEYKN-----IKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLR-GHMAS 272 (464)
T ss_dssp ----SSCEEEEEEEESSS-----CEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEEC-CCSSC
T ss_pred ----CCccEEEEEecCCC-----CCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEcc-Cccce
Confidence 35799999874211 124777899999999999876532211000 0 000 11233 33445
Q ss_pred eEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCC
Q 003087 163 VICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGK 242 (849)
Q Consensus 163 V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~ 242 (849)
|.++ +|+|+++++++.|++ |++|++.... .+ ....+ |...|.+++|+|||+
T Consensus 273 v~~~--~~~~~~l~~~~~d~~-------------i~vwd~~~~~---~~---------~~~~~--~~~~v~~~~~~~~~~ 323 (464)
T 3v7d_B 273 VRTV--SGHGNIVVSGSYDNT-------------LIVWDVAQMK---CL---------YILSG--HTDRIYSTIYDHERK 323 (464)
T ss_dssp EEEE--EEETTEEEEEETTSC-------------EEEEETTTTE---EE---------EEECC--CSSCEEEEEEETTTT
T ss_pred EEEE--cCCCCEEEEEeCCCe-------------EEEEECCCCc---EE---------EEecC--CCCCEEEEEEcCCCC
Confidence 7666 788999999998873 8999987642 11 12234 788999999999999
Q ss_pred EEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCEEEEEEeCCcEEEEEecCCc
Q 003087 243 FVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNILILARKSSIITMIDVLSGL 322 (849)
Q Consensus 243 ~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~la~a~~dgti~lwdl~~~~ 322 (849)
+||+++.||+|++||+.++++ +..+. .|...|..++|+ +..+++++.||+|++||+.+++
T Consensus 324 ~l~sg~~dg~i~vwd~~~~~~-~~~~~------------------~h~~~v~~~~~~-~~~l~s~s~dg~v~vwd~~~~~ 383 (464)
T 3v7d_B 324 RCISASMDTTIRIWDLENGEL-MYTLQ------------------GHTALVGLLRLS-DKFLVSAAADGSIRGWDANDYS 383 (464)
T ss_dssp EEEEEETTSCEEEEETTTTEE-EEEEC------------------CCSSCEEEEEEC-SSEEEEEETTSEEEEEETTTCC
T ss_pred EEEEEeCCCcEEEEECCCCcE-EEEEe------------------CCCCcEEEEEEc-CCEEEEEeCCCcEEEEECCCCc
Confidence 999999999999999988754 33332 345678999986 5678999999999999999887
Q ss_pred ccc
Q 003087 323 KVK 325 (849)
Q Consensus 323 ~l~ 325 (849)
...
T Consensus 384 ~~~ 386 (464)
T 3v7d_B 384 RKF 386 (464)
T ss_dssp EEE
T ss_pred eee
Confidence 543
No 98
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.92 E-value=3e-24 Score=235.83 Aligned_cols=240 Identities=10% Similarity=0.045 Sum_probs=168.7
Q ss_pred EEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCCcc-ceec--
Q 003087 16 LFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANGEE-ITRF-- 91 (849)
Q Consensus 16 lafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~~-~~~l-- 91 (849)
..+.+|+++||+|+ |++|+||+..++ .....+. .+.|.+++|+|+ +++|+.|++|++|+..+.. +..+
T Consensus 42 ~~~~~d~~~l~sg~~Dg~v~iwd~~~~--~~~~~~~---~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~ 113 (343)
T 3lrv_A 42 KSMYYDKWVCMCRCEDGALHFTQLKDS--KTITTIT---TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKT 113 (343)
T ss_dssp SSSSEEEEEEEEEEETTEEEEEEESSS--SCEEEEE---EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTT
T ss_pred hhhcCCCCEEEEECCCCcEEEEECCCC--cEEEEEe---cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCC
Confidence 34568999999997 789999998653 3333333 245778999999 9999999999999877542 1111
Q ss_pred ----ccccccccccEEEEEecC--CcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEE
Q 003087 92 ----TNKHLKVSLPIIGLIAQD--ETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVIC 165 (849)
Q Consensus 92 ----~~~~~~~~~~V~~l~fs~--~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~s 165 (849)
..+...+...|.+++|+| ++. .|++++.||+|++||+.++..... +.+++...|.+
T Consensus 114 ~~~~~~~~~~~~~~v~~~~~~~~~~~~-------~l~s~s~dg~i~~wd~~~~~~~~~-----------~~~~~~~~i~~ 175 (343)
T 3lrv_A 114 NKVLREIEVDSANEIIYMYGHNEVNTE-------YFIWADNRGTIGFQSYEDDSQYIV-----------HSAKSDVEYSS 175 (343)
T ss_dssp CCEEEEEECCCSSCEEEEECCC---CC-------EEEEEETTCCEEEEESSSSCEEEE-----------ECCCSSCCCCE
T ss_pred cceeEEeecCCCCCEEEEEcCCCCCCC-------EEEEEeCCCcEEEEECCCCcEEEE-----------EecCCCCceEE
Confidence 111112235699999988 543 366779999999999987665322 12244456999
Q ss_pred EEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEE
Q 003087 166 TDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVA 245 (849)
Q Consensus 166 vafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LA 245 (849)
++|||||++||+|+.|++ |++||+..+.... .. +. .+ |...|.+|+|||||++||
T Consensus 176 ~~~~pdg~~lasg~~dg~-------------i~iwd~~~~~~~~--~~------~~--~~--h~~~v~~l~fs~~g~~l~ 230 (343)
T 3lrv_A 176 GVLHKDSLLLALYSPDGI-------------LDVYNLSSPDQAS--SR------FP--VD--EEAKIKEVKFADNGYWMV 230 (343)
T ss_dssp EEECTTSCEEEEECTTSC-------------EEEEESSCTTSCC--EE------CC--CC--TTSCEEEEEECTTSSEEE
T ss_pred EEECCCCCEEEEEcCCCE-------------EEEEECCCCCCCc--cE------Ee--cc--CCCCEEEEEEeCCCCEEE
Confidence 999999999999988863 8999998753210 01 11 12 778999999999999999
Q ss_pred EEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCc--EEEEEecCCE-EEEEEe-CCcEEEEEecCC
Q 003087 246 TSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDI--TDFAWWSDNI-LILARK-SSIITMIDVLSG 321 (849)
Q Consensus 246 s~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v--~~vaws~D~~-la~a~~-dgti~lwdl~~~ 321 (849)
+++ |++|+|||+.+... +..+.... .+...+ ..++|+|+|. +++++. |+.|+||++.+.
T Consensus 231 s~~-~~~v~iwd~~~~~~-~~~~~~~~---------------~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~ 293 (343)
T 3lrv_A 231 VEC-DQTVVCFDLRKDVG-TLAYPTYT---------------IPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKK 293 (343)
T ss_dssp EEE-SSBEEEEETTSSTT-CBSSCCCB---------------C-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred EEe-CCeEEEEEcCCCCc-ceeecccc---------------cccccccceEEEECCCCCEEEEecCCCCcEEEEEEccc
Confidence 999 66999999997654 22222100 011112 4699999986 566676 999999999766
Q ss_pred cc
Q 003087 322 LK 323 (849)
Q Consensus 322 ~~ 323 (849)
.+
T Consensus 294 ~~ 295 (343)
T 3lrv_A 294 TK 295 (343)
T ss_dssp TC
T ss_pred cc
Confidence 54
No 99
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.92 E-value=3.2e-24 Score=243.82 Aligned_cols=207 Identities=12% Similarity=0.113 Sum_probs=153.2
Q ss_pred CCCEEEEEECC-CCCEEEEEeCCCcEEEEecCCcc-ceecccccccccccEEEEEecC-CcccccccceeEEEEeCCCcE
Q 003087 54 LGASIYGAWSE-SHDVLGIVDDTHTVYFFKANGEE-ITRFTNKHLKVSLPIIGLIAQD-ETDVQRSCLCSFTVFTSDGFL 130 (849)
Q Consensus 54 ~~~v~~vafSP-DG~~LAs~~~dgtIrlWd~~g~~-~~~l~~~~~~~~~~V~~l~fs~-~~~~~~s~~~~~~~~s~Dg~v 130 (849)
...|++|+||| ++++||+|+.||+|+|||+.... ...+.. .++...|.+|+|+| ++. .|++++.||+|
T Consensus 119 ~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~--~gH~~~V~~l~f~p~~~~-------~l~s~s~D~~v 189 (435)
T 4e54_B 119 DRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKG--IGAGGSITGLKFNPLNTN-------QFYASSMEGTT 189 (435)
T ss_dssp SSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECC--CSSSCCCCEEEECSSCTT-------EEEEECSSSCE
T ss_pred CCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEc--cCCCCCEEEEEEeCCCCC-------EEEEEeCCCEE
Confidence 45699999999 67899999999999999997432 222211 12246799999987 332 36777999999
Q ss_pred EEEEecCCCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCccc
Q 003087 131 HQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQ 210 (849)
Q Consensus 131 ~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~ 210 (849)
++||+.++....... ...+...+.+++|+|+|++||+|+.|++ |++|++.+. .
T Consensus 190 ~iwd~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~l~~g~~dg~-------------i~~wd~~~~----~ 242 (435)
T 4e54_B 190 RLQDFKGNILRVFAS----------SDTINIWFCSLDVSASSRMVVTGDNVGN-------------VILLNMDGK----E 242 (435)
T ss_dssp EEEETTSCEEEEEEC----------CSSCSCCCCCEEEETTTTEEEEECSSSB-------------EEEEESSSC----B
T ss_pred EEeeccCCceeEEec----------cCCCCccEEEEEECCCCCEEEEEeCCCc-------------EeeeccCcc----e
Confidence 999987543321111 0012235889999999999999988863 899998653 1
Q ss_pred ceeccccceeeccCCCccccccceEEEccCCC-EEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCC
Q 003087 211 LYTTQIEGLYCEPKGHEVQLAHPKVLISPQGK-FVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKP 289 (849)
Q Consensus 211 l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~-~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~ 289 (849)
+. ...+ |...|.+|+|+|+|+ +||+++.||+|+|||+.+.+. ...+... ..|
T Consensus 243 ~~---------~~~~--h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~-~~~~~~~---------------~~h 295 (435)
T 4e54_B 243 LW---------NLRM--HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRG-KASFLYS---------------LPH 295 (435)
T ss_dssp CC---------CSBC--CSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCS-SSCCSBC---------------CBC
T ss_pred eE---------EEec--ccceEEeeeecCCCceEEEEecCcceeeEEecccccc-cceEEEe---------------eec
Confidence 11 1234 888999999999987 788999999999999987543 1122100 135
Q ss_pred CCCcEEEEEecCCE-EEEEEeCCcEEEEEecCCcc
Q 003087 290 ISDITDFAWWSDNI-LILARKSSIITMIDVLSGLK 323 (849)
Q Consensus 290 ~~~v~~vaws~D~~-la~a~~dgti~lwdl~~~~~ 323 (849)
...|.+++|+|||. |++++.||+|+|||+.++..
T Consensus 296 ~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~ 330 (435)
T 4e54_B 296 RHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDC 330 (435)
T ss_dssp SSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSS
T ss_pred cccccceeECCCCCeeEEEcCCCEEEEEECCCCcc
Confidence 67899999999985 78899999999999998763
No 100
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.9e-24 Score=268.58 Aligned_cols=257 Identities=11% Similarity=0.000 Sum_probs=175.3
Q ss_pred cceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeee--e------cCCCCEEEEEECCCCCEEEEEeCCCcEEEE
Q 003087 11 KKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFN--C------TGLGASIYGAWSESHDVLGIVDDTHTVYFF 81 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~--~------~~~~~v~~vafSPDG~~LAs~~~dgtIrlW 81 (849)
..+.+|+|||||++||+|+ |++|++||..++.......+. . .+...|.+|+|||||++||+|+.||+|+||
T Consensus 436 ~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lw 515 (902)
T 2oaj_A 436 RTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLF 515 (902)
T ss_dssp CCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred CCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEE
Confidence 4577889999999999998 789999998754211001111 0 235689999999999999999999999999
Q ss_pred ecCCcc----------------------------------------------ceecccccccccccEEEEEecCCccccc
Q 003087 82 KANGEE----------------------------------------------ITRFTNKHLKVSLPIIGLIAQDETDVQR 115 (849)
Q Consensus 82 d~~g~~----------------------------------------------~~~l~~~~~~~~~~V~~l~fs~~~~~~~ 115 (849)
|+.+.. +..+.. +...|.+|+|+|++ .
T Consensus 516 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~----h~~~V~svafSpdG-~-- 588 (902)
T 2oaj_A 516 KYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHA----NKGKTSAINNSNIG-F-- 588 (902)
T ss_dssp EEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECC----CSCSEEEEEECBTS-E--
T ss_pred EecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEc----CCCcEEEEEecCCc-E--
Confidence 997431 222222 23689999999987 4
Q ss_pred ccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEc-----CCC---ceEEEEecCCCCccc
Q 003087 116 SCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYH-----PEL---SLLSVVSNTDTSSLT 187 (849)
Q Consensus 116 s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafs-----Pdg---~lLas~g~d~t~~~~ 187 (849)
+++++.||+|++||+.++....... ...+..+|...|++|+|| ||| ++||+|+.|+|
T Consensus 589 -----lAsgs~D~tv~lwd~~~~~~~~~~~------~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~t---- 653 (902)
T 2oaj_A 589 -----VGIAYAAGSLMLIDRRGPAIIYMEN------IREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGE---- 653 (902)
T ss_dssp -----EEEEETTSEEEEEETTTTEEEEEEE------GGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSE----
T ss_pred -----EEEEeCCCcEEEEECCCCeEEEEee------hhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCc----
Confidence 5566999999999986544311000 011221346679999999 886 89999999974
Q ss_pred cCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEE-Ec----------------------cCCCEE
Q 003087 188 SSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVL-IS----------------------PQGKFV 244 (849)
Q Consensus 188 ~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~va-fS----------------------PDG~~L 244 (849)
|++|++.....++.+. ++.|... .. |.+.|.+++ |+ |+|.+|
T Consensus 654 ---------v~~wd~~p~~~g~~~~--~~~~~~~--~~--~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l 718 (902)
T 2oaj_A 654 ---------VITYKILPASGGKFDV--QLMDITN--VT--SKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVL 718 (902)
T ss_dssp ---------EEEEEEEECGGGCEEE--EEEEEEE--CC--SSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEE
T ss_pred ---------EEEEEEecCCCCcEEE--EecCcee--cC--CCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEE
Confidence 8999983321111111 1111110 00 345677776 66 889888
Q ss_pred EEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEE---E------EecCCE-EEEEEeCCcEE
Q 003087 245 ATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDF---A------WWSDNI-LILARKSSIIT 314 (849)
Q Consensus 245 As~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v---a------ws~D~~-la~a~~dgti~ 314 (849)
|++ +..||||+++++++ +++.- ++...+.+| . |++++. |++...||+|+
T Consensus 719 ~~~--~~~ir~~~~~~~k~-~~k~~------------------~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~g~i~ 777 (902)
T 2oaj_A 719 ITG--FDDIRLITLGKSKS-THKGF------------------KYPLAATGLSYISTVEKNNDRKNLTVIITLEINGHLR 777 (902)
T ss_dssp EEC--SSEEEEECTTCCCE-EEEEC------------------SSCEEEEEEEEEEEECSSSCEEEEEEEEEEETTSEEE
T ss_pred EEe--ccceEEEeCccccc-eeeEc------------------ccceeeeEEEEEEeccccccccCceEEEEEeCCCcEE
Confidence 876 88999999998765 33321 111234454 5 778765 77889999999
Q ss_pred EEEecCCcccc
Q 003087 315 MIDVLSGLKVK 325 (849)
Q Consensus 315 lwdl~~~~~l~ 325 (849)
+|++++++.+.
T Consensus 778 ~~s~p~l~~~~ 788 (902)
T 2oaj_A 778 VFTIPDFKEQM 788 (902)
T ss_dssp EEETTTCCEEE
T ss_pred EEECcchHHHh
Confidence 99999998654
No 101
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.5e-23 Score=260.65 Aligned_cols=274 Identities=12% Similarity=0.107 Sum_probs=176.6
Q ss_pred cccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecC-Cc
Q 003087 9 KTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKAN-GE 86 (849)
Q Consensus 9 ~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~-g~ 86 (849)
..+.|.+|+|||||++||+|+ |++|+||+.... .. .....+...|.+|+||| |++||+++.|++|+|||+. |+
T Consensus 16 h~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~--~~--~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~ 90 (902)
T 2oaj_A 16 MSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQV--EV--VIKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQK 90 (902)
T ss_dssp CSSCEEEEEEETTTTEEEEEETTSEEEEECSTTC--EE--EEECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCS
T ss_pred CCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCc--EE--EEEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCc
Confidence 447899999999999999998 689999986532 11 12223467899999999 9999999999999999997 55
Q ss_pred cceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCc-ceeccccCCceEE
Q 003087 87 EITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSG-LTLRRQFPQNVIC 165 (849)
Q Consensus 87 ~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~V~s 165 (849)
.+..+. ++ ..|.+++|+|++. .+++++.||+|++||+.++......-... ... ..+. +|...|.+
T Consensus 91 ~~~~~~-~~----~~V~~v~~sp~g~-------~l~sgs~dg~V~lwd~~~~~~~~~~i~~~-~~~~~~~~-~h~~~V~s 156 (902)
T 2oaj_A 91 VLTTVF-VP----GKITSIDTDASLD-------WMLIGLQNGSMIVYDIDRDQLSSFKLDNL-QKSSFFPA-ARLSPIVS 156 (902)
T ss_dssp EEEEEE-CS----SCEEEEECCTTCS-------EEEEEETTSCEEEEETTTTEEEEEEECCH-HHHHTCSS-SCCCCCCE
T ss_pred EEEEEc-CC----CCEEEEEECCCCC-------EEEEEcCCCcEEEEECCCCccccceeccc-cccccccc-cCCCCeEE
Confidence 555543 22 4699999998654 36677999999999998765421100000 000 1123 34567999
Q ss_pred EEEcCC-CceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceec----cccce--eeccCCCccccccceEEEc
Q 003087 166 TDYHPE-LSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTT----QIEGL--YCEPKGHEVQLAHPKVLIS 238 (849)
Q Consensus 166 vafsPd-g~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~----~~~~~--~~~~~g~~h~~~V~~vafS 238 (849)
++|||+ +..|++|+.|+ .| +|++..+.....+... ...+. .....+ |...|.+|+||
T Consensus 157 l~~sp~~~~~l~~g~~dg-------------~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--h~~~V~~v~fs 220 (902)
T 2oaj_A 157 IQWNPRDIGTVLISYEYV-------------TL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEK--RTPKVIQSLYH 220 (902)
T ss_dssp EEEETTEEEEEEEECSSC-------------EE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSC--BCCCEEEEEEC
T ss_pred EEEccCCCCEEEEEeCCC-------------cE-EEECCCCceEEEEecccCCcCCCcccccccccc--cCCCeEEEEEc
Confidence 999996 56888887775 38 9998764211111000 00000 001123 56789999999
Q ss_pred cCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCC-CCCCCCCcEEEEEe----cCC-E-EEEEEeC-
Q 003087 239 PQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDG-RTKPISDITDFAWW----SDN-I-LILARKS- 310 (849)
Q Consensus 239 PDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~-~~~~~~~v~~vaws----~D~-~-la~a~~d- 310 (849)
|||++|||++.||+|+|||+.++++ +..........+... ...+. .-.+...|.+++|+ ||+ . +++++.+
T Consensus 221 pdg~~lasgs~Dg~i~lWd~~~g~~-~~~r~l~~~~~~~~~-~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~ 298 (902)
T 2oaj_A 221 PNSLHIITIHEDNSLVFWDANSGHM-IMARTVFETEINVPQ-PDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSIS 298 (902)
T ss_dssp TTSSEEEEEETTCCEEEEETTTCCE-EEEECSSCSCTTSCC-TTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECST
T ss_pred CCCCEEEEEECCCeEEEEECCCCcE-EEEEeecccccCCCC-CcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCC
Confidence 9999999999999999999987654 221111000000000 00000 00133468999996 443 3 4556555
Q ss_pred ----CcEEEEEec
Q 003087 311 ----SIITMIDVL 319 (849)
Q Consensus 311 ----gti~lwdl~ 319 (849)
+++++|++.
T Consensus 299 ~~~~~~v~~~~~~ 311 (902)
T 2oaj_A 299 RGDNQSLTMIDLG 311 (902)
T ss_dssp TSSCCCEEEEEEE
T ss_pred CCCCceEEEEecC
Confidence 379999863
No 102
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.3e-23 Score=237.48 Aligned_cols=273 Identities=12% Similarity=0.083 Sum_probs=179.3
Q ss_pred cccceEEEEEcCCCCeEEEEe-CCeEEEEecCCC-CCcceee--------eee-c--CCCCEEEEE--ECCCCCEEEEEe
Q 003087 9 KTKKQVSLFISPRGERVAVAA-VNQVTILQKDDD-YQEPCGI--------FNC-T--GLGASIYGA--WSESHDVLGIVD 73 (849)
Q Consensus 9 ~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~-~~~~~~~--------~~~-~--~~~~v~~va--fSPDG~~LAs~~ 73 (849)
+.+.|.+++|+|||++||+|+ |++|+||+.... .+..... +.. . +...+.+++ |+|||++|++|+
T Consensus 110 h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 189 (437)
T 3gre_A 110 CSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALT 189 (437)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEE
T ss_pred CCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEe
Confidence 357899999999999999998 689999987411 0111111 110 1 244566666 789999999999
Q ss_pred CCCcEEEEecC-CccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCc
Q 003087 74 DTHTVYFFKAN-GEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSG 152 (849)
Q Consensus 74 ~dgtIrlWd~~-g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~ 152 (849)
.||+|++||+. ++.+..+..+ .+...|.+++|+|++. .+++++.||+|++||+.++.....
T Consensus 190 ~d~~i~iwd~~~~~~~~~~~~~--~h~~~v~~~~~s~~~~-------~l~s~~~dg~i~iwd~~~~~~~~~--------- 251 (437)
T 3gre_A 190 NLSRVIIFDIRTLERLQIIENS--PRHGAVSSICIDEECC-------VLILGTTRGIIDIWDIRFNVLIRS--------- 251 (437)
T ss_dssp TTSEEEEEETTTCCEEEEEECC--GGGCCEEEEEECTTSC-------EEEEEETTSCEEEEETTTTEEEEE---------
T ss_pred CCCeEEEEeCCCCeeeEEEccC--CCCCceEEEEECCCCC-------EEEEEcCCCeEEEEEcCCccEEEE---------
Confidence 99999999996 5665665442 0235799999998643 366779999999999987554322
Q ss_pred ceeccccCCceEEE----EEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCccccee---------ccccc-
Q 003087 153 LTLRRQFPQNVICT----DYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYT---------TQIEG- 218 (849)
Q Consensus 153 ~~l~~~~~~~V~sv----afsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~---------~~~~~- 218 (849)
+.-.+...|.++ +|+|+|++|++++.|++ |++|++..+.....+.. ....+
T Consensus 252 --~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~-------------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (437)
T 3gre_A 252 --WSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTF-------------LTIWNFVKGHCQYAFINSDEQPSMEHFLPIEK 316 (437)
T ss_dssp --EBCTTCEEEEEEEECTTTCTTEEEEEEESTTEE-------------EEEEETTTTEEEEEEESSSSCCCGGGGSCBCS
T ss_pred --EecCCCCceEEEEeccccCCCccEEEEEcCCCc-------------EEEEEcCCCcEEEEEEcCCCCCccceeccccc
Confidence 211223469999 55567989999988863 88998875421111110 00000
Q ss_pred eee--ccCCCccccccceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccc-------------------
Q 003087 219 LYC--EPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQ------------------- 277 (849)
Q Consensus 219 ~~~--~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~------------------- 277 (849)
.+. ...|..|...|.+++|+ +|++|+|++.||+|++||+.++++ +..+..+......
T Consensus 317 ~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (437)
T 3gre_A 317 GLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSS-SKAVISPSRFSDVFIPTQVTANLTMLLRKMKR 394 (437)
T ss_dssp SGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGG-CEEEECC--CCCEEEEEEEETTEEEEEEECC-
T ss_pred ccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCccc-ceEEecccccCceEEEEEeecceEEEEEeccc
Confidence 000 01122277899999999 889999999999999999998754 3333321000000
Q ss_pred -cccccCCCCCCCCCCcEEEEEecC--C-EEEEEEeCCcEEEEE
Q 003087 278 -VADSLFDGRTKPISDITDFAWWSD--N-ILILARKSSIITMID 317 (849)
Q Consensus 278 -~~~~l~~~~~~~~~~v~~vaws~D--~-~la~a~~dgti~lwd 317 (849)
....+. ....|...|.+++|.++ + .+++|+.||+|+||+
T Consensus 395 ~~~~~~~-~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 395 TSTHSVD-DSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp -------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred ccccccC-cccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 000000 00136778999999998 5 477899999999995
No 103
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.91 E-value=6.7e-23 Score=233.80 Aligned_cols=258 Identities=14% Similarity=0.072 Sum_probs=174.9
Q ss_pred cceEEEEEcCCCCeE-EEEe-CCeEEEEecCCCCCcceeeeee-cCCCCEEEEEECCCCCEEEEEeCCCcEEEEecC-Cc
Q 003087 11 KKQVSLFISPRGERV-AVAA-VNQVTILQKDDDYQEPCGIFNC-TGLGASIYGAWSESHDVLGIVDDTHTVYFFKAN-GE 86 (849)
Q Consensus 11 ~~v~slafSPdG~~L-Asas-~~~i~iw~~~~~~~~~~~~~~~-~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~-g~ 86 (849)
+.|.+++|||||++| |+++ |++|+||+.....+.....+.. .+...|.+++|||||++|++|+.||+|++|++. ++
T Consensus 103 ~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~ 182 (450)
T 2vdu_B 103 SYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIP 182 (450)
T ss_dssp CCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCC
T ss_pred CceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcc
Confidence 369999999999996 8886 6899999976212334444432 235679999999999999999999999999986 33
Q ss_pred cce----ecccccccccccEEEEEecCC---cccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceecccc
Q 003087 87 EIT----RFTNKHLKVSLPIIGLIAQDE---TDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQF 159 (849)
Q Consensus 87 ~~~----~l~~~~~~~~~~V~~l~fs~~---~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~ 159 (849)
... .+.. +...|.+++|+|+ +. .|++++.||+|++||+.++..... +..+|
T Consensus 183 ~~~~~~~~~~~----h~~~v~~~~~sp~~~~~~-------~l~s~~~d~~i~vwd~~~~~~~~~-----------~~~~h 240 (450)
T 2vdu_B 183 EEKFTQEPILG----HVSMLTDVHLIKDSDGHQ-------FIITSDRDEHIKISHYPQCFIVDK-----------WLFGH 240 (450)
T ss_dssp CSSCCCCCSEE----CSSCEEEEEEEECTTSCE-------EEEEEETTSCEEEEEESCTTCEEE-----------ECCCC
T ss_pred cccccceeeec----ccCceEEEEEcCCCCCCc-------EEEEEcCCCcEEEEECCCCceeee-----------eecCC
Confidence 322 2222 2357999999986 42 367779999999999987654321 11145
Q ss_pred CCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccc-ccee----------eccCCCcc
Q 003087 160 PQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQI-EGLY----------CEPKGHEV 228 (849)
Q Consensus 160 ~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~-~~~~----------~~~~g~~h 228 (849)
...|.+++|+ ||++|++++.|+ .|++|++..+.....+..... ..+. ....+..+
T Consensus 241 ~~~v~~~~~s-d~~~l~s~~~d~-------------~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (450)
T 2vdu_B 241 KHFVSSICCG-KDYLLLSAGGDD-------------KIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDII 306 (450)
T ss_dssp SSCEEEEEEC-STTEEEEEESSS-------------EEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CB
T ss_pred CCceEEEEEC-CCCEEEEEeCCC-------------eEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccc
Confidence 6679999999 999999999886 389999876532111110000 0000 00000013
Q ss_pred ccccceEEEccCCCEEEEEe-CCCcEEEEec--CCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCEEE
Q 003087 229 QLAHPKVLISPQGKFVATSD-TNGCLYIFEM--DKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNILI 305 (849)
Q Consensus 229 ~~~V~~vafSPDG~~LAs~s-~Dgtv~LWd~--~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~la 305 (849)
...|.+|+|+|||++|++++ .||+|+||++ .+... +..... +. .+ ..|.+++|+|++.++
T Consensus 307 ~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~-l~~~~~-----------~~----~~-~~v~~~~~~~~~~~v 369 (450)
T 2vdu_B 307 EFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGD-LALKQI-----------IT----FP-YNVISLSAHNDEFQV 369 (450)
T ss_dssp CCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTC-EEEEEE-----------EE----CS-SCEEEEEEETTEEEE
T ss_pred eEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCc-eeeccE-----------ec----cC-CceEEEEecCCcEEE
Confidence 45789999999999999999 8999999999 43211 111110 00 12 568999999976555
Q ss_pred EEEe-------CCcEEEEEecCC
Q 003087 306 LARK-------SSIITMIDVLSG 321 (849)
Q Consensus 306 ~a~~-------dgti~lwdl~~~ 321 (849)
++.. ++.|.||.+...
T Consensus 370 ~~~~~~~~~~~~~~i~v~~~~~~ 392 (450)
T 2vdu_B 370 TLDNKESSGVQKNFAKFIEYNLN 392 (450)
T ss_dssp EECCTTCCSSCCCSEEEEEEETT
T ss_pred EEecccCCCCCCcceEEEEEEcC
Confidence 4432 456899988643
No 104
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.91 E-value=1.1e-23 Score=229.96 Aligned_cols=210 Identities=11% Similarity=0.027 Sum_probs=133.0
Q ss_pred ccceEEEEEcCC----CCeEEEEe---------------------CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECC
Q 003087 10 TKKQVSLFISPR----GERVAVAA---------------------VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSE 64 (849)
Q Consensus 10 ~~~v~slafSPd----G~~LAsas---------------------~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSP 64 (849)
++.|++|+|||| |+++|+++ +++|++|+...+ ++....+.. +.+.++.++|||
T Consensus 111 ~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~d-G~~~~s~~~-~~~~v~~l~fs~ 188 (356)
T 2w18_A 111 IREIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAED-GGGKENQFL-MPPEETILTFAE 188 (356)
T ss_dssp EEEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTT-SCEEEEEEE-CCCSSCEEEEEE
T ss_pred ccceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCC-Cceeeeecc-CCCceeeEEeec
Confidence 467899999999 99998755 345556654321 122222222 244566677777
Q ss_pred ---CCCEEEEEeCCCcEEEEecC-CccceecccccccccccEEEEEecCCccccc--ccc---eeEEEEeCCCcEEEEEe
Q 003087 65 ---SHDVLGIVDDTHTVYFFKAN-GEEITRFTNKHLKVSLPIIGLIAQDETDVQR--SCL---CSFTVFTSDGFLHQIEI 135 (849)
Q Consensus 65 ---DG~~LAs~~~dgtIrlWd~~-g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~--s~~---~~~~~~s~Dg~v~lw~~ 135 (849)
||.+||||+.|+||||||+. |+.+.++..++.. ...|..++|+|++.... +.+ ..+++++.|++|++||.
T Consensus 189 ~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~-v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~ 267 (356)
T 2w18_A 189 VQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSY-QASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINP 267 (356)
T ss_dssp EETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC----CCCEEEEEEETTEEEEEEC------------CCEEEEEEET
T ss_pred cCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcc-eeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEEC
Confidence 66889999999999999997 8877887655422 24678889999765331 111 12567789999999999
Q ss_pred cCCCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceecc
Q 003087 136 SQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQ 215 (849)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~ 215 (849)
.++.....+. +.+..+|...+.+.+++ |.++|+++.|+| |++||+..+...
T Consensus 268 ~tgk~l~v~~-------~~~p~Gh~~~~lsg~~s--g~~lASgS~DgT-------------IkIWDl~tGk~l------- 318 (356)
T 2w18_A 268 KTTLSVGVML-------YCLPPGQAGRFLEGDVK--DHCAAAILTSGT-------------IAIWDLLLGQCT------- 318 (356)
T ss_dssp TTTEEEEEEE-------ECCCTTCCCCEEEEEEE--TTEEEEEETTSC-------------EEEEETTTCSEE-------
T ss_pred CCCEEEEEEE-------eeccCCCcceeEccccC--CCEEEEEcCCCc-------------EEEEECCCCcEE-------
Confidence 8776533211 11111223334444444 889999988974 899999875311
Q ss_pred ccceeeccCCCccccccc-eEEEccCCCEEEEEeCCCcEEEEec
Q 003087 216 IEGLYCEPKGHEVQLAHP-KVLISPQGKFVATSDTNGCLYIFEM 258 (849)
Q Consensus 216 ~~~~~~~~~g~~h~~~V~-~vafSPDG~~LAs~s~Dgtv~LWd~ 258 (849)
..+.| |.+.+. .++|||||++|||++.||+|+|||+
T Consensus 319 -----~tL~g--H~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 319 -----ALLPP--VSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp -----EEECC--C--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred -----EEecC--CCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 12234 766666 5899999999999999999999986
No 105
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.90 E-value=2.7e-22 Score=217.62 Aligned_cols=240 Identities=10% Similarity=0.055 Sum_probs=171.2
Q ss_pred cccceEEEEEcCCCC-eEEEEe-CCeEEEEec-CCCCCcceeeeee-cCCCCEEEEEECCCCCEEEEEeCCCcEEEEecC
Q 003087 9 KTKKQVSLFISPRGE-RVAVAA-VNQVTILQK-DDDYQEPCGIFNC-TGLGASIYGAWSESHDVLGIVDDTHTVYFFKAN 84 (849)
Q Consensus 9 ~~~~v~slafSPdG~-~LAsas-~~~i~iw~~-~~~~~~~~~~~~~-~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~ 84 (849)
..+.|.+++|+|||+ +||+|+ +++|++|+. ..+ . ...+.. .+...|.+++|+| +++|++++.||+|++||+.
T Consensus 55 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~--~-~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~ 130 (342)
T 1yfq_A 55 YKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSP--S-FQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPR 130 (342)
T ss_dssp CSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSS--S-EEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHH
T ss_pred cCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCC--c-eEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEccc
Confidence 347899999999999 999998 689999997 643 1 222222 0467899999999 9999999999999999986
Q ss_pred C---------cc-ceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecC-CCCcccccccccCCcc
Q 003087 85 G---------EE-ITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQ-DPSASISSASASSSGL 153 (849)
Q Consensus 85 g---------~~-~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~-~~~~~~~~~~~~~~~~ 153 (849)
. .. +..+. +...|.+++|+++. +++++.||.|++|++.+ +.....
T Consensus 131 ~~~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~---------l~~~~~d~~i~i~d~~~~~~~~~~---------- 186 (342)
T 1yfq_A 131 NYGDGVIAVKNLNSNNTK-----VKNKIFTMDTNSSR---------LIVGMNNSQVQWFRLPLCEDDNGT---------- 186 (342)
T ss_dssp HHTTBCEEEEESCSSSSS-----SCCCEEEEEECSSE---------EEEEESTTEEEEEESSCCTTCCCE----------
T ss_pred ccccccccccCCeeeEEe-----eCCceEEEEecCCc---------EEEEeCCCeEEEEECCccccccce----------
Confidence 3 32 33322 23578999998754 55668999999999986 433111
Q ss_pred eeccccCCceEEEEEcC-CCceEEEEecCCCCccccCCCCCCceeeEEEecCCcC---cccceeccccceeeccCCCccc
Q 003087 154 TLRRQFPQNVICTDYHP-ELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLE---LEQLYTTQIEGLYCEPKGHEVQ 229 (849)
Q Consensus 154 ~l~~~~~~~V~svafsP-dg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~---~~~l~~~~~~~~~~~~~g~~h~ 229 (849)
.....+...|.+++|+| +|+++++++.++ .|++|++....+ ...+..... .-....+..|.
T Consensus 187 ~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg-------------~i~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 251 (342)
T 1yfq_A 187 IEESGLKYQIRDVALLPKEQEGYACSSIDG-------------RVAVEFFDDQGDDYNSSKRFAFRC--HRLNLKDTNLA 251 (342)
T ss_dssp EEECSCSSCEEEEEECSGGGCEEEEEETTS-------------EEEEEECCTTCCSTTCTTCEEEEC--CCCCTTCCSSC
T ss_pred eeecCCCCceeEEEECCCCCCEEEEEecCC-------------cEEEEEEcCCCcccccccceeeec--ccccccccccc
Confidence 11123455799999999 999999999886 389999876410 011111100 00000001145
Q ss_pred cccceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCC-CCCcEEEEEecCC-EEEEE
Q 003087 230 LAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKP-ISDITDFAWWSDN-ILILA 307 (849)
Q Consensus 230 ~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~-~~~v~~vaws~D~-~la~a 307 (849)
..|.+++|||||++||+++.||+|++||+.+++. +..+. .| ...|.+++ ||+ .++++
T Consensus 252 ~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~------------------~~h~~~v~~~~--~~~~~l~s~ 310 (342)
T 1yfq_A 252 YPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKK-IKNFA------------------KFNEDSVVKIA--CSDNILCLA 310 (342)
T ss_dssp CCEEEEEECTTTCCEEEEETTSCEEEEETTTTEE-EEECC------------------CCSSSEEEEEE--ECSSEEEEE
T ss_pred eeEEEEEEcCCCCEEEEecCCceEEEEcCccHhH-hhhhh------------------cccCCCceEec--CCCCeEEEE
Confidence 5999999999999999999999999999997754 33332 23 56788888 776 47889
Q ss_pred EeCCc
Q 003087 308 RKSSI 312 (849)
Q Consensus 308 ~~dgt 312 (849)
+.||+
T Consensus 311 s~Dg~ 315 (342)
T 1yfq_A 311 TSDDT 315 (342)
T ss_dssp EECTH
T ss_pred ecCCc
Confidence 99998
No 106
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.90 E-value=2.8e-22 Score=219.69 Aligned_cols=211 Identities=13% Similarity=0.078 Sum_probs=157.3
Q ss_pred CCCCEEEEEECCCCCEEEEEeCCCcEEEEecCC---ccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCc
Q 003087 53 GLGASIYGAWSESHDVLGIVDDTHTVYFFKANG---EEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGF 129 (849)
Q Consensus 53 ~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g---~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~ 129 (849)
|...|++++|||||++||+|+.||+|+|||+.+ +.+..+..| ...|.+++|+++.. ...|++++.||+
T Consensus 10 h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h----~~~v~~~~~~~~~~-----~~~l~s~~~dg~ 80 (379)
T 3jrp_A 10 HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGH----EGPVWRVDWAHPKF-----GTILASCSYDGK 80 (379)
T ss_dssp CCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCC----SSCEEEEEECCGGG-----CSEEEEEETTSC
T ss_pred CcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCC----CCcEEEEEeCCCCC-----CCEEEEeccCCE
Confidence 467899999999999999999999999999963 233344333 35799999976421 014777899999
Q ss_pred EEEEEecCCCCcccccccccCCcceeccccCCceEEEEEcCC--CceEEEEecCCCCccccCCCCCCceeeEEEecCCcC
Q 003087 130 LHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPE--LSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLE 207 (849)
Q Consensus 130 v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPd--g~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~ 207 (849)
|++||+.++..... ..+. .|...|.+++|+|+ |++|++++.|+ .|++|++.....
T Consensus 81 v~iwd~~~~~~~~~---------~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~d~-------------~i~v~d~~~~~~ 137 (379)
T 3jrp_A 81 VLIWKEENGRWSQI---------AVHA-VHSASVNSVQWAPHEYGPLLLVASSDG-------------KVSVVEFKENGT 137 (379)
T ss_dssp EEEEEEETTEEEEE---------EEEC-CCSSCEEEEEECCGGGCSEEEEEETTS-------------EEEEEECCTTSC
T ss_pred EEEEEcCCCceeEe---------eeec-CCCcceEEEEeCCCCCCCEEEEecCCC-------------cEEEEecCCCCc
Confidence 99999987652111 1223 34567999999999 99999999987 389999876521
Q ss_pred cccceeccccceeeccCCCccccccceEEEcc-------------CCCEEEEEeCCCcEEEEecCCCccccccccccccc
Q 003087 208 LEQLYTTQIEGLYCEPKGHEVQLAHPKVLISP-------------QGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERF 274 (849)
Q Consensus 208 ~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSP-------------DG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~ 274 (849)
...+ ...+ |...|.+++|+| ||++||+++.||+|++||+.+.... .....
T Consensus 138 ~~~~----------~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~---- 200 (379)
T 3jrp_A 138 TSPI----------IIDA--HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT-YVLES---- 200 (379)
T ss_dssp CCEE----------EEEC--CTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTE-EEEEE----
T ss_pred eeeE----------EecC--CCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcc-eeeEE----
Confidence 1111 1123 778999999999 7999999999999999999865321 11110
Q ss_pred ccccccccCCCCCCCCCCcEEEEEecC---CE-EEEEEeCCcEEEEEecCCc
Q 003087 275 DLQVADSLFDGRTKPISDITDFAWWSD---NI-LILARKSSIITMIDVLSGL 322 (849)
Q Consensus 275 ~~~~~~~l~~~~~~~~~~v~~vaws~D---~~-la~a~~dgti~lwdl~~~~ 322 (849)
.+ ..|...|.+++|+|| +. +++++.||+|+|||+.++.
T Consensus 201 ------~~----~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~ 242 (379)
T 3jrp_A 201 ------TL----EGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ 242 (379)
T ss_dssp ------EE----CCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTT
T ss_pred ------EE----ecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCC
Confidence 00 135577999999999 65 6788999999999999874
No 107
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.4e-22 Score=222.37 Aligned_cols=239 Identities=12% Similarity=0.084 Sum_probs=161.9
Q ss_pred cceEEEEEcCCCCeEEEEe-CCeEEEEecCCC-------CCcceeeeeecCCCCEEEEEECC--CCCEEEEEeCCCcEEE
Q 003087 11 KKQVSLFISPRGERVAVAA-VNQVTILQKDDD-------YQEPCGIFNCTGLGASIYGAWSE--SHDVLGIVDDTHTVYF 80 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas-~~~i~iw~~~~~-------~~~~~~~~~~~~~~~v~~vafSP--DG~~LAs~~~dgtIrl 80 (849)
+.|.+++|+|+ +++++ |++|++|+.... .+.....+...+...|.+++|+| +|++||+|+.||+|++
T Consensus 77 ~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~ 153 (343)
T 3lrv_A 77 PNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGF 153 (343)
T ss_dssp ECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEE
T ss_pred CCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEE
Confidence 56778889998 88887 689999976521 11112222222346799999999 9999999999999999
Q ss_pred EecCCccceecc-cccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceecccc
Q 003087 81 FKANGEEITRFT-NKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQF 159 (849)
Q Consensus 81 Wd~~g~~~~~l~-~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~ 159 (849)
||+......... .++ ...|.+++|+|++.. |++++.||+|++||+.++.... .++.+.|
T Consensus 154 wd~~~~~~~~~~~~~~---~~~i~~~~~~pdg~~-------lasg~~dg~i~iwd~~~~~~~~----------~~~~~~h 213 (343)
T 3lrv_A 154 QSYEDDSQYIVHSAKS---DVEYSSGVLHKDSLL-------LALYSPDGILDVYNLSSPDQAS----------SRFPVDE 213 (343)
T ss_dssp EESSSSCEEEEECCCS---SCCCCEEEECTTSCE-------EEEECTTSCEEEEESSCTTSCC----------EECCCCT
T ss_pred EECCCCcEEEEEecCC---CCceEEEEECCCCCE-------EEEEcCCCEEEEEECCCCCCCc----------cEEeccC
Confidence 999744333322 222 246889999997643 5667899999999998766431 1234435
Q ss_pred CCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccc--eEEE
Q 003087 160 PQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHP--KVLI 237 (849)
Q Consensus 160 ~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~--~vaf 237 (849)
...|.+++|+|+|++|++++ +++ |++||+........+. .+.+ |...+. +++|
T Consensus 214 ~~~v~~l~fs~~g~~l~s~~-~~~-------------v~iwd~~~~~~~~~~~---------~~~~--~~~~~~~~~~~~ 268 (343)
T 3lrv_A 214 EAKIKEVKFADNGYWMVVEC-DQT-------------VVCFDLRKDVGTLAYP---------TYTI--PEFKTGTVTYDI 268 (343)
T ss_dssp TSCEEEEEECTTSSEEEEEE-SSB-------------EEEEETTSSTTCBSSC---------CCBC-------CCEEEEE
T ss_pred CCCEEEEEEeCCCCEEEEEe-CCe-------------EEEEEcCCCCcceeec---------cccc--ccccccceEEEE
Confidence 67899999999999999988 432 8999987653211111 1111 223344 5999
Q ss_pred ccCCCEEEEEeC-CCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEec---CC-EEEEEEeCCc
Q 003087 238 SPQGKFVATSDT-NGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWS---DN-ILILARKSSI 312 (849)
Q Consensus 238 SPDG~~LAs~s~-Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~---D~-~la~a~~dgt 312 (849)
+|+|++||+++. |+.|+||++.+... .|.. .++..++|.+ +. .+++++.||+
T Consensus 269 ~~~g~~l~~~s~~d~~i~v~~~~~~~~---~~~~--------------------~~~~~~~~~~~~~~~~~l~~~~~d~~ 325 (343)
T 3lrv_A 269 DDSGKNMIAYSNESNSLTIYKFDKKTK---NWTK--------------------DEESALCLQSDTADFTDMDVVCGDGG 325 (343)
T ss_dssp CTTSSEEEEEETTTTEEEEEEECTTTC---SEEE--------------------EEEEECCC----CCCCEEEEEEETTE
T ss_pred CCCCCEEEEecCCCCcEEEEEEccccc---ceEe--------------------cCceeEecCccccccceeEEEecCCc
Confidence 999999999998 99999999976532 3331 1244566666 54 4677788888
Q ss_pred EEEEEecC
Q 003087 313 ITMIDVLS 320 (849)
Q Consensus 313 i~lwdl~~ 320 (849)
+.++-...
T Consensus 326 ~~~~~~~~ 333 (343)
T 3lrv_A 326 IAAILKTN 333 (343)
T ss_dssp EEEEEECS
T ss_pred eEEEEecC
Confidence 88775443
No 108
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.90 E-value=1.2e-21 Score=217.03 Aligned_cols=224 Identities=8% Similarity=0.038 Sum_probs=155.3
Q ss_pred cccceEEEEEcC-CCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECC---CCCEEEEEeCCCcEEEEec
Q 003087 9 KTKKQVSLFISP-RGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSE---SHDVLGIVDDTHTVYFFKA 83 (849)
Q Consensus 9 ~~~~v~slafSP-dG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSP---DG~~LAs~~~dgtIrlWd~ 83 (849)
+.+.|.+++|+| ++++||+++ +++|++|+.... .....+. ....+.+++|+| ++.+|++|+.||+|++||+
T Consensus 98 ~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~ 173 (408)
T 4a11_B 98 HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTL--QTADVFN--FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDL 173 (408)
T ss_dssp CSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTT--EEEEEEE--CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEES
T ss_pred CCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCC--ccceecc--CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeC
Confidence 667899999999 888999998 789999997642 3333332 356789999999 4559999999999999999
Q ss_pred C-CccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCC-cccccc----cccCCcceecc
Q 003087 84 N-GEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPS-ASISSA----SASSSGLTLRR 157 (849)
Q Consensus 84 ~-g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~-~~~~~~----~~~~~~~~l~~ 157 (849)
. ++.+..+..+ ...|.+++|+|++.. .|++++.||.|++||+.++.. ...+.. ........+.
T Consensus 174 ~~~~~~~~~~~~----~~~v~~~~~~~~~~~------ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~- 242 (408)
T 4a11_B 174 KSGSCSHILQGH----RQEILAVSWSPRYDY------ILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANT- 242 (408)
T ss_dssp SSSCCCEEECCC----CSCEEEEEECSSCTT------EEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSC-
T ss_pred CCcceeeeecCC----CCcEEEEEECCCCCc------EEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccc-
Confidence 7 5555555433 257999999986531 256678999999999976542 111100 0000001112
Q ss_pred ccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCccc---------------------------
Q 003087 158 QFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQ--------------------------- 210 (849)
Q Consensus 158 ~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~--------------------------- 210 (849)
.+...|.+++|+|+|++|++++.|++ |++|++..+.....
T Consensus 243 ~~~~~v~~~~~~~~~~~l~~~~~dg~-------------i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (408)
T 4a11_B 243 AHNGKVNGLCFTSDGLHLLTVGTDNR-------------MRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVF 309 (408)
T ss_dssp SCSSCEEEEEECTTSSEEEEEETTSC-------------EEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEE
T ss_pred cccCceeEEEEcCCCCEEEEecCCCe-------------EEEEECCCCccceeccccccccccccceeEEecCCCceEEE
Confidence 34567999999999999999999975 56666544211000
Q ss_pred --------ceeccccceeeccCCCccccccceEEEccCCCEEEEEeCCCcEEEEecCCCc
Q 003087 211 --------LYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDN 262 (849)
Q Consensus 211 --------l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~ 262 (849)
++.......+....+ |...|.+++|||||++||+++.||+|++|++.+.+
T Consensus 310 ~~~~~~i~v~d~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 367 (408)
T 4a11_B 310 VPYGSTIAVYTVYSGEQITMLKG--HYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYE 367 (408)
T ss_dssp EEETTEEEEEETTTCCEEEEECC--CSSCEEEEEEETTTTEEEEEETTSCEEEEEECC--
T ss_pred EecCCEEEEEECcCCcceeeecc--CCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCC
Confidence 000000111223345 88899999999999999999999999999999764
No 109
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.89 E-value=2.5e-22 Score=219.39 Aligned_cols=258 Identities=12% Similarity=0.049 Sum_probs=150.1
Q ss_pred eEEEEEc-CCCC--eEEEEeCCeEEEEecCCCCC-cceeeeeec--------CCC----------------CEEEEEECC
Q 003087 13 QVSLFIS-PRGE--RVAVAAVNQVTILQKDDDYQ-EPCGIFNCT--------GLG----------------ASIYGAWSE 64 (849)
Q Consensus 13 v~slafS-PdG~--~LAsas~~~i~iw~~~~~~~-~~~~~~~~~--------~~~----------------~v~~vafSP 64 (849)
|.++.|- +.++ -+++|+..+|++|+..+..+ ....++..+ -.+ .|++|+|||
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~sp 121 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITACEDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSS 121 (356)
T ss_dssp EEEEEEC----CEEEEEEEESSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC--
T ss_pred EeeeeeccCCCCccEEEEeccceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECC
Confidence 3344443 4444 56788899999999876411 111111110 012 678999999
Q ss_pred C----CCEEEEEeCCCcEEEEecC-CccceecccccccccccEEEEEecCCcccccc-----------------cc-eeE
Q 003087 65 S----HDVLGIVDDTHTVYFFKAN-GEEITRFTNKHLKVSLPIIGLIAQDETDVQRS-----------------CL-CSF 121 (849)
Q Consensus 65 D----G~~LAs~~~dgtIrlWd~~-g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s-----------------~~-~~~ 121 (849)
| |+++++++. ++++|++. |+.+......| ...|..++|+|++....+ .+ ..+
T Consensus 122 d~~~~~~~l~s~g~--~~~v~~l~~g~lv~ss~~g~---d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~L 196 (356)
T 2w18_A 122 DDESEKQVLLKSGN--IKAVLGLTKRRLVSSSGTLS---DQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEAL 196 (356)
T ss_dssp ----CCEEEEEEEE--EEEEEEETTTEEEEEESSST---TCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEE
T ss_pred CccccccEEEeCCC--eEEEEecCCCcEEEecccCC---CCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceE
Confidence 9 999999874 25556654 22222211111 234555555543321110 01 236
Q ss_pred EEEeCCCcEEEEEecCCCCcccccccccCCcceecccc--CCceEEEEEcCCCceEEEEecCCCCccccC-CCCCCceee
Q 003087 122 TVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQF--PQNVICTDYHPELSLLSVVSNTDTSSLTSS-GNSGPCCIS 198 (849)
Q Consensus 122 ~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~V~svafsPdg~lLas~g~d~t~~~~~~-~~~G~~~I~ 198 (849)
++++.|++|++||+.+|+.... |.+|+ ...|.+++|||||+++++++.+. .+|.+ +++...+|+
T Consensus 197 aSgS~D~TIkIWDl~TGk~l~t-----------L~g~~~~v~~v~~vafSpdG~~lvs~s~~~--~~w~laSGs~D~tIk 263 (356)
T 2w18_A 197 LGTTIMNNIVIWNLKTGQLLKK-----------MHIDDSYQASVCHKAYSEMGLLFIVLSHPC--AKESESLRSPVFQLI 263 (356)
T ss_dssp EEEETTSEEEEEETTTCCEEEE-----------EECCC---CCCEEEEEEETTEEEEEEC--------------CCEEEE
T ss_pred EEecCCCcEEEEECCCCcEEEE-----------EcCCCcceeeeEEEEECCCCCEEEEeccCC--CcceeeccCCCcEEE
Confidence 6779999999999998876543 33332 23688999999999998766543 23322 233334699
Q ss_pred EEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEEeCCCcEEEEecCCCccccccccccccccccc
Q 003087 199 LWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQV 278 (849)
Q Consensus 199 lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~ 278 (849)
+|++.++.....+ . +..+.| |...+.+..+ +|.++|+++.||+|+|||+.++++ +.++.
T Consensus 264 lWd~~tgk~l~v~-~------~~~p~G--h~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~-l~tL~--------- 322 (356)
T 2w18_A 264 VINPKTTLSVGVM-L------YCLPPG--QAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQC-TALLP--------- 322 (356)
T ss_dssp EEETTTTEEEEEE-E------ECCCTT--CCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSE-EEEEC---------
T ss_pred EEECCCCEEEEEE-E------eeccCC--CcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcE-EEEec---------
Confidence 9998765311110 0 001234 5544434444 599999999999999999998865 44443
Q ss_pred ccccCCCCCCCCCCcE-EEEEecCCE-EEEEEeCCcEEEEEe
Q 003087 279 ADSLFDGRTKPISDIT-DFAWWSDNI-LILARKSSIITMIDV 318 (849)
Q Consensus 279 ~~~l~~~~~~~~~~v~-~vaws~D~~-la~a~~dgti~lwdl 318 (849)
+|...+. .++|+|||+ |++|+.||+|+|||+
T Consensus 323 ---------gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 323 ---------PVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp ---------CC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred ---------CCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 2333344 589999986 789999999999996
No 110
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.89 E-value=8.2e-22 Score=214.86 Aligned_cols=219 Identities=12% Similarity=0.114 Sum_probs=160.2
Q ss_pred CCCCEEEEEECCCCCEEEEEeCCCcEEEEecC-CccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEE
Q 003087 53 GLGASIYGAWSESHDVLGIVDDTHTVYFFKAN-GEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLH 131 (849)
Q Consensus 53 ~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~-g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~ 131 (849)
+...|++++|||||++||+|+.||+|++||+. ++.+..+..+ ...|.+++|+|++. .|++++.||+|+
T Consensus 31 h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h----~~~v~~~~~~~~~~-------~l~s~~~dg~i~ 99 (369)
T 3zwl_B 31 HERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGH----TGTIWSIDVDCFTK-------YCVTGSADYSIK 99 (369)
T ss_dssp CSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCC----SSCEEEEEECTTSS-------EEEEEETTTEEE
T ss_pred eeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhc----CCcEEEEEEcCCCC-------EEEEEeCCCeEE
Confidence 36789999999999999999999999999986 6665555443 25799999988653 366779999999
Q ss_pred EEEecCCCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccc
Q 003087 132 QIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQL 211 (849)
Q Consensus 132 lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l 211 (849)
+||+.++..... +. +...|.+++|+|+|+.+++++.+.. ...| .|++|++........+
T Consensus 100 iwd~~~~~~~~~-----------~~--~~~~v~~~~~~~~~~~l~~~~~~~~------~~~g--~i~~~d~~~~~~~~~~ 158 (369)
T 3zwl_B 100 LWDVSNGQCVAT-----------WK--SPVPVKRVEFSPCGNYFLAILDNVM------KNPG--SINIYEIERDSATHEL 158 (369)
T ss_dssp EEETTTCCEEEE-----------EE--CSSCEEEEEECTTSSEEEEEECCBT------TBCC--EEEEEEEEECTTTCCE
T ss_pred EEECCCCcEEEE-----------ee--cCCCeEEEEEccCCCEEEEecCCcc------CCCC--EEEEEEecCCccceee
Confidence 999987664322 22 3457999999999999999887710 0112 4899999775322222
Q ss_pred eeccccceeeccCCCcccc--ccceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCC
Q 003087 212 YTTQIEGLYCEPKGHEVQL--AHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKP 289 (849)
Q Consensus 212 ~~~~~~~~~~~~~g~~h~~--~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~ 289 (849)
..... .......+ |.. .+.+++|+|||++|++++.||+|++||+.+....+..+. .+
T Consensus 159 ~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------------------~~ 217 (369)
T 3zwl_B 159 TKVSE-EPIHKIIT--HEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSID------------------LH 217 (369)
T ss_dssp EEECS-SCSEEEEC--CTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEE------------------CC
T ss_pred ccccc-ceeeeccC--CcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEe------------------cC
Confidence 11100 01111122 333 899999999999999999999999999987322222322 24
Q ss_pred CCCcEEEEEecCCE-EEEEEeCCcEEEEEecCCccc
Q 003087 290 ISDITDFAWWSDNI-LILARKSSIITMIDVLSGLKV 324 (849)
Q Consensus 290 ~~~v~~vaws~D~~-la~a~~dgti~lwdl~~~~~l 324 (849)
...|.+++|+||+. +++++.||.|++||+.+++.+
T Consensus 218 ~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~ 253 (369)
T 3zwl_B 218 EKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVL 253 (369)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred CCceeEEEECCCCCEEEEecCCceEEEEECCCCcee
Confidence 46799999999985 678899999999999988743
No 111
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.89 E-value=8.4e-22 Score=223.51 Aligned_cols=232 Identities=12% Similarity=0.185 Sum_probs=174.2
Q ss_pred cceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecC-Cccc
Q 003087 11 KKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKAN-GEEI 88 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~-g~~~ 88 (849)
+.|.+++| ||++||+|+ |++|++|+.... .....+.. +.+.|.+++| ||++||+|+.||+|++||+. |+.+
T Consensus 134 ~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~--~~~~~~~~-h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~ 206 (435)
T 1p22_A 134 KGVYCLQY--DDQKIVSGLRDNTIKIWDKNTL--ECKRILTG-HTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEML 206 (435)
T ss_dssp CCEEEEEC--CSSEEEEEESSSCEEEEESSSC--CEEEEECC-CSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEE
T ss_pred CcEEEEEE--CCCEEEEEeCCCeEEEEeCCCC--eEEEEEcC-CCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEE
Confidence 44666654 899999997 689999997642 33333332 3678999998 89999999999999999997 6665
Q ss_pred eecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEE
Q 003087 89 TRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDY 168 (849)
Q Consensus 89 ~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svaf 168 (849)
..+..+ ...|.++.|+++ .+++++.||+|++||+.++...... ..+. +|...|.+++|
T Consensus 207 ~~~~~h----~~~v~~l~~~~~---------~l~s~s~dg~i~vwd~~~~~~~~~~--------~~~~-~~~~~v~~~~~ 264 (435)
T 1p22_A 207 NTLIHH----CEAVLHLRFNNG---------MMVTCSKDRSIAVWDMASPTDITLR--------RVLV-GHRAAVNVVDF 264 (435)
T ss_dssp EEECCC----CSCEEEEECCTT---------EEEEEETTSCEEEEECSSSSCCEEE--------EEEC-CCSSCEEEEEE
T ss_pred EEEcCC----CCcEEEEEEcCC---------EEEEeeCCCcEEEEeCCCCCCceee--------eEec-CCCCcEEEEEe
Confidence 555443 357899998653 3677799999999999876543211 1233 44567999999
Q ss_pred cCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEEe
Q 003087 169 HPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSD 248 (849)
Q Consensus 169 sPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s 248 (849)
+|+.|++|+.|+ .|++|++..+. .+. ...+ |...|.+++| +|++|++++
T Consensus 265 --~~~~l~s~~~dg-------------~i~vwd~~~~~---~~~---------~~~~--~~~~v~~~~~--~~~~l~~g~ 313 (435)
T 1p22_A 265 --DDKYIVSASGDR-------------TIKVWNTSTCE---FVR---------TLNG--HKRGIACLQY--RDRLVVSGS 313 (435)
T ss_dssp --ETTEEEEEETTS-------------EEEEEETTTCC---EEE---------EEEC--CSSCEEEEEE--ETTEEEEEE
T ss_pred --CCCEEEEEeCCC-------------eEEEEECCcCc---EEE---------EEcC--CCCcEEEEEe--CCCEEEEEe
Confidence 789999999886 38999987642 111 1224 7778999988 789999999
Q ss_pred CCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCEEEEEEeCCcEEEEEecCCc
Q 003087 249 TNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNILILARKSSIITMIDVLSGL 322 (849)
Q Consensus 249 ~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~la~a~~dgti~lwdl~~~~ 322 (849)
.||+|++||+.++.+ +..+. .|...|.+++| .+..+++|+.||+|+|||+.+++
T Consensus 314 ~dg~i~iwd~~~~~~-~~~~~------------------~h~~~v~~~~~-~~~~l~sg~~dg~i~vwd~~~~~ 367 (435)
T 1p22_A 314 SDNTIRLWDIECGAC-LRVLE------------------GHEELVRCIRF-DNKRIVSGAYDGKIKVWDLVAAL 367 (435)
T ss_dssp TTSCEEEEETTTCCE-EEEEC------------------CCSSCEEEEEC-CSSEEEEEETTSCEEEEEHHHHT
T ss_pred CCCeEEEEECCCCCE-EEEEe------------------CCcCcEEEEEe-cCCEEEEEeCCCcEEEEECCCCC
Confidence 999999999998754 33332 24567899998 44568899999999999998765
No 112
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.89 E-value=6.5e-22 Score=223.56 Aligned_cols=208 Identities=13% Similarity=0.067 Sum_probs=149.2
Q ss_pred cccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeee--------------------------------------
Q 003087 9 KTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIF-------------------------------------- 49 (849)
Q Consensus 9 ~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~-------------------------------------- 49 (849)
..+.|.+|+|||||++||+|+ |++|+||+...+. .+..+
T Consensus 146 ~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~--~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~ 223 (420)
T 4gga_A 146 PGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK--RLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHV 223 (420)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTE--EEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEE
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCc--EEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceee
Confidence 346799999999999999998 6899999976431 11000
Q ss_pred -e-ecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecC-CccceecccccccccccEEEEEecCCcc-cccccceeEEEEe
Q 003087 50 -N-CTGLGASIYGAWSESHDVLGIVDDTHTVYFFKAN-GEEITRFTNKHLKVSLPIIGLIAQDETD-VQRSCLCSFTVFT 125 (849)
Q Consensus 50 -~-~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~-g~~~~~l~~~~~~~~~~V~~l~fs~~~~-~~~s~~~~~~~~s 125 (849)
. ..+...+..+.|+|+|++|++++.||+|++|+.. |+...........+...|.+++|+|... ... ...++
T Consensus 224 ~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la-----~~~gs 298 (420)
T 4gga_A 224 ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLA-----TGGGT 298 (420)
T ss_dssp EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEE-----EEECT
T ss_pred EEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEE-----EEeec
Confidence 0 1124567899999999999999999999999986 3321111111122346799999988432 111 11236
Q ss_pred CCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCC
Q 003087 126 SDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHN 205 (849)
Q Consensus 126 ~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~ 205 (849)
.||+|++||+.++.....+ . + ...|.++.|+|+++.|++++.... | .|++|++.++
T Consensus 299 ~D~~I~iwd~~t~~~~~~~-----------~-~-~~~v~~~~~~~~~~~lv~~sg~~d---------~--~I~iwd~~~~ 354 (420)
T 4gga_A 299 SDRHIRIWNVCSGACLSAV-----------D-A-HSQVCSILWSPHYKELISGHGFAQ---------N--QLVIWKYPTM 354 (420)
T ss_dssp TTCEEEEEETTTTEEEEEE-----------E-C-SSCEEEEEEETTTTEEEEEECTTT---------C--CEEEEETTTC
T ss_pred CCCEEEEEeCCccccceee-----------c-c-ccceeeeeecCCCCeEEEEEecCC---------C--EEEEEECCCC
Confidence 8999999999877654322 1 2 235999999999999988764211 2 3999998764
Q ss_pred cCcccceeccccceeeccCCCccccccceEEEccCCCEEEEEeCCCcEEEEecCCC
Q 003087 206 LELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKD 261 (849)
Q Consensus 206 ~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~ 261 (849)
. .+ ..+.| |.+.|.+|+|||||++|||++.||+|+|||+...
T Consensus 355 ~---~v---------~~l~g--H~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~ 396 (420)
T 4gga_A 355 A---KV---------AELKG--HTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 396 (420)
T ss_dssp C---EE---------EEECC--CSSCEEEEEECTTSSCEEEEETTTEEEEECCSCS
T ss_pred c---EE---------EEEcC--CCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 2 22 12346 8999999999999999999999999999999764
No 113
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.89 E-value=1.1e-21 Score=210.18 Aligned_cols=208 Identities=13% Similarity=0.066 Sum_probs=148.3
Q ss_pred cccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeee--------------------------------------
Q 003087 9 KTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIF-------------------------------------- 49 (849)
Q Consensus 9 ~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~-------------------------------------- 49 (849)
+...|.+|+|+|||++||+|+ |++|+||+...+ +....+
T Consensus 66 ~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~--~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~ 143 (318)
T 4ggc_A 66 PGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ--KRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHV 143 (318)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTSEEEEEETTTT--EEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEE
T ss_pred CCCeEEEEEECCCCCEEEEEECCCcEEEeecCCc--eeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeE
Confidence 346799999999999999998 689999997643 111110
Q ss_pred -e-ecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecC-CccceecccccccccccEEEEEecCCcccccccceeEEEEeC
Q 003087 50 -N-CTGLGASIYGAWSESHDVLGIVDDTHTVYFFKAN-GEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTS 126 (849)
Q Consensus 50 -~-~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~-g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~ 126 (849)
. ..+...+..++|+|+|++|++++.||+|++||+. |+...............|.+++++++..... .++..+.
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----~~~~~~~ 219 (318)
T 4ggc_A 144 ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVL----ATGGGTS 219 (318)
T ss_dssp EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEE----EEEECTT
T ss_pred EEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEE----EEEecCC
Confidence 0 1124567899999999999999999999999986 3332222111222335788999987432110 1334578
Q ss_pred CCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCc
Q 003087 127 DGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNL 206 (849)
Q Consensus 127 Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~ 206 (849)
+++|++|+......... . .+...|..+.|+|+++.+++++.... | .|++|++.++.
T Consensus 220 ~~~i~lwd~~~~~~~~~------------~-~~~~~v~~~~~~~~~~~~~~~sg~~d---------~--~i~iwd~~~~~ 275 (318)
T 4ggc_A 220 DRHIRIWNVCSGACLSA------------V-DAHSQVCSILWSPHYKELISGHGFAQ---------N--QLVIWKYPTMA 275 (318)
T ss_dssp TCEEEEEETTTCCEEEE------------E-ECSSCEEEEEEETTTTEEEEEECTTT---------C--CEEEEETTTCC
T ss_pred CCEEEEEeccccccccc------------c-cceeeeeeeeecccccceEEEEEcCC---------C--EEEEEECCCCc
Confidence 99999999876543221 1 23346999999999999887763211 2 39999987642
Q ss_pred CcccceeccccceeeccCCCccccccceEEEccCCCEEEEEeCCCcEEEEecCC
Q 003087 207 ELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDK 260 (849)
Q Consensus 207 ~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~ 260 (849)
.+ ..+.| |.+.|.+|+|||||++|||+|.||+|+|||+..
T Consensus 276 ---~~---------~~l~g--H~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 276 ---KV---------AELKG--HTSRVLSLTMSPDGATVASAAADETLRLWRCFE 315 (318)
T ss_dssp ---EE---------EEECC--CSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred ---EE---------EEEcC--CCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 22 22346 889999999999999999999999999999864
No 114
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.89 E-value=3.2e-21 Score=219.04 Aligned_cols=232 Identities=13% Similarity=0.184 Sum_probs=174.4
Q ss_pred cceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecC-Cccc
Q 003087 11 KKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKAN-GEEI 88 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~-g~~~ 88 (849)
+.|.. +++++|++||+|+ |++|++|+...+ .....+. .+.+.|.+++|+ +++|++|+.||+|++||+. |+.+
T Consensus 119 ~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~--~~~~~~~-~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~ 192 (445)
T 2ovr_B 119 DHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTG--KCLRTLV-GHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECI 192 (445)
T ss_dssp TSCEE-EEEEETTEEEEEETTSCEEEEETTTC--CEEEECC-CCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEE
T ss_pred CCcEE-EEEEcCCEEEEEECCCcEEEEECCCC--cEEEEEc-CCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEE
Confidence 44433 4777899999998 689999997643 3333333 236789999998 6799999999999999997 6665
Q ss_pred eecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEE
Q 003087 89 TRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDY 168 (849)
Q Consensus 89 ~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svaf 168 (849)
..+..+ ...|.++.|+++ .+++++.||+|++||+.++..... +. .|...|.+++|
T Consensus 193 ~~~~~h----~~~v~~~~~~~~---------~l~s~s~dg~i~~wd~~~~~~~~~-----------~~-~~~~~v~~~~~ 247 (445)
T 2ovr_B 193 HTLYGH----TSTVRCMHLHEK---------RVVSGSRDATLRVWDIETGQCLHV-----------LM-GHVAAVRCVQY 247 (445)
T ss_dssp EEECCC----SSCEEEEEEETT---------EEEEEETTSEEEEEESSSCCEEEE-----------EE-CCSSCEEEEEE
T ss_pred EEECCC----CCcEEEEEecCC---------EEEEEeCCCEEEEEECCCCcEEEE-----------Ec-CCcccEEEEEE
Confidence 555443 357889988542 367779999999999987664322 33 34567999999
Q ss_pred cCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEEe
Q 003087 169 HPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSD 248 (849)
Q Consensus 169 sPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s 248 (849)
+|+.+++++.|++ |++|++..+. .+ ....+ |...|.+++| ||++|++++
T Consensus 248 --~~~~l~~~~~dg~-------------i~iwd~~~~~---~~---------~~~~~--~~~~v~~~~~--~~~~l~~~~ 296 (445)
T 2ovr_B 248 --DGRRVVSGAYDFM-------------VKVWDPETET---CL---------HTLQG--HTNRVYSLQF--DGIHVVSGS 296 (445)
T ss_dssp --CSSCEEEEETTSC-------------EEEEEGGGTE---EE---------EEECC--CSSCEEEEEE--CSSEEEEEE
T ss_pred --CCCEEEEEcCCCE-------------EEEEECCCCc---Ee---------EEecC--CCCceEEEEE--CCCEEEEEe
Confidence 7899999998863 8999987642 11 12234 7789999999 999999999
Q ss_pred CCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCEEEEEEeCCcEEEEEecCCccc
Q 003087 249 TNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNILILARKSSIITMIDVLSGLKV 324 (849)
Q Consensus 249 ~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~la~a~~dgti~lwdl~~~~~l 324 (849)
.||+|++||+.+++. +..+. .+...+..++| .++.+++++.||+|++||+.+++.+
T Consensus 297 ~d~~i~i~d~~~~~~-~~~~~------------------~~~~~v~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~ 352 (445)
T 2ovr_B 297 LDTSIRVWDVETGNC-IHTLT------------------GHQSLTSGMEL-KDNILVSGNADSTVKIWDIKTGQCL 352 (445)
T ss_dssp TTSCEEEEETTTCCE-EEEEC------------------CCCSCEEEEEE-ETTEEEEEETTSCEEEEETTTCCEE
T ss_pred CCCeEEEEECCCCCE-EEEEc------------------CCcccEEEEEE-eCCEEEEEeCCCeEEEEECCCCcEE
Confidence 999999999998754 33332 23456777777 3457889999999999999988744
No 115
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.89 E-value=2.5e-21 Score=214.83 Aligned_cols=238 Identities=13% Similarity=0.124 Sum_probs=168.8
Q ss_pred cceEEEEEcCCCCeE-EEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEE-EeCCCcEEEEecCC-c
Q 003087 11 KKQVSLFISPRGERV-AVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGI-VDDTHTVYFFKANG-E 86 (849)
Q Consensus 11 ~~v~slafSPdG~~L-Asas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs-~~~dgtIrlWd~~g-~ 86 (849)
..+.+++|||||++| ++++ +++|++|+..++ +....+. .+..+.+++|||||++|++ ++.+++|++||+.+ +
T Consensus 32 ~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~--~~~~~~~--~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~ 107 (391)
T 1l0q_A 32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATN--NVIATVP--AGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNT 107 (391)
T ss_dssp SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTT--EEEEEEE--CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred CCcceEEECCCCCEEEEECCCCCeEEEEECCCC--eEEEEEE--CCCCccceEECCCCCEEEEEECCCCEEEEEECCCCe
Confidence 458999999999988 4553 689999997642 3333332 3448999999999998865 55679999999974 4
Q ss_pred cceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEE
Q 003087 87 EITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICT 166 (849)
Q Consensus 87 ~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~sv 166 (849)
.+..+. ++ ..+.+++|+|++... +++.+.||.|++||+.+++.... +..+ ..+.++
T Consensus 108 ~~~~~~-~~----~~~~~~~~s~dg~~l------~~~~~~~~~v~~~d~~~~~~~~~-----------~~~~--~~~~~~ 163 (391)
T 1l0q_A 108 VAGTVK-TG----KSPLGLALSPDGKKL------YVTNNGDKTVSVINTVTKAVINT-----------VSVG--RSPKGI 163 (391)
T ss_dssp EEEEEE-CS----SSEEEEEECTTSSEE------EEEETTTTEEEEEETTTTEEEEE-----------EECC--SSEEEE
T ss_pred EEEEEe-CC----CCcceEEECCCCCEE------EEEeCCCCEEEEEECCCCcEEEE-----------EecC--CCcceE
Confidence 433332 22 357899998865421 24557799999999987654322 2222 358999
Q ss_pred EEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEE
Q 003087 167 DYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVAT 246 (849)
Q Consensus 167 afsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs 246 (849)
+|+|||+.|++++..+ | .|++|++.++.. +. .+. |...+..++|+|||++|++
T Consensus 164 ~~~~dg~~l~~~~~~~----------~--~v~~~d~~~~~~---~~------~~~------~~~~~~~~~~~~~g~~l~~ 216 (391)
T 1l0q_A 164 AVTPDGTKVYVANFDS----------M--SISVIDTVTNSV---ID------TVK------VEAAPSGIAVNPEGTKAYV 216 (391)
T ss_dssp EECTTSSEEEEEETTT----------T--EEEEEETTTTEE---EE------EEE------CSSEEEEEEECTTSSEEEE
T ss_pred EECCCCCEEEEEeCCC----------C--EEEEEECCCCeE---EE------EEe------cCCCccceEECCCCCEEEE
Confidence 9999999885544432 2 489999876421 11 110 3457889999999999999
Q ss_pred Ee---CCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-E-EEEEeCCcEEEEEecCC
Q 003087 247 SD---TNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-L-ILARKSSIITMIDVLSG 321 (849)
Q Consensus 247 ~s---~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-l-a~a~~dgti~lwdl~~~ 321 (849)
++ .++.|++||+.+++. +..+.. + ..+..++|+||+. + ++++.||+|++||+.++
T Consensus 217 ~~~~~~~~~v~~~d~~~~~~-~~~~~~------------------~-~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~ 276 (391)
T 1l0q_A 217 TNVDKYFNTVSMIDTGTNKI-TARIPV------------------G-PDPAGIAVTPDGKKVYVALSFXNTVSVIDTATN 276 (391)
T ss_dssp EEECSSCCEEEEEETTTTEE-EEEEEC------------------C-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred EecCcCCCcEEEEECCCCeE-EEEEec------------------C-CCccEEEEccCCCEEEEEcCCCCEEEEEECCCC
Confidence 98 699999999987643 233221 1 2468899999985 4 34578999999999988
Q ss_pred cc
Q 003087 322 LK 323 (849)
Q Consensus 322 ~~ 323 (849)
+.
T Consensus 277 ~~ 278 (391)
T 1l0q_A 277 TI 278 (391)
T ss_dssp EE
T ss_pred cE
Confidence 74
No 116
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.88 E-value=2.4e-21 Score=217.53 Aligned_cols=283 Identities=11% Similarity=0.039 Sum_probs=160.2
Q ss_pred ceEEEEE---cCCC-CeEEEEeCCeEEEEecCCCCCc-----ceeee-eecCCCCE--------------------EEEE
Q 003087 12 KQVSLFI---SPRG-ERVAVAAVNQVTILQKDDDYQE-----PCGIF-NCTGLGAS--------------------IYGA 61 (849)
Q Consensus 12 ~v~slaf---SPdG-~~LAsas~~~i~iw~~~~~~~~-----~~~~~-~~~~~~~v--------------------~~va 61 (849)
..+.+.| +|++ +++|+|.++.|++|+...+... ..... .......+ ....
T Consensus 17 ~p~~~~w~~~~~~~~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (393)
T 4gq1_A 17 RPYTTTWCSQSPSCSNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGNVNS 96 (393)
T ss_dssp CEEEEEECTTSGGGTTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC----------
T ss_pred CCeEEEEeCCCCCCCCEEEEECCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcceee
Confidence 4567777 4554 4667777899999975322110 00000 00111222 3445
Q ss_pred ECCCCCEEEEEeCCCcEEEEecCCcccee--cccccccccccEEEEEecCCcccccccc-eeEEEEeCCCcEEEEEecCC
Q 003087 62 WSESHDVLGIVDDTHTVYFFKANGEEITR--FTNKHLKVSLPIIGLIAQDETDVQRSCL-CSFTVFTSDGFLHQIEISQD 138 (849)
Q Consensus 62 fSPDG~~LAs~~~dgtIrlWd~~g~~~~~--l~~~~~~~~~~V~~l~fs~~~~~~~s~~-~~~~~~s~Dg~v~lw~~~~~ 138 (849)
++|++++||+|+.|++|||||+.+..... ......++...|.+|+|+|......+.+ ..|++++.|++|++||+.++
T Consensus 97 ~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~ 176 (393)
T 4gq1_A 97 SPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDE 176 (393)
T ss_dssp CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETT
T ss_pred cCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCC
Confidence 56778899999999999999997543221 1111122346899999987322222222 35788899999999999865
Q ss_pred CCcccccccccCCcceeccccCCceEEEEEcCCCc-eEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccc------
Q 003087 139 PSASISSASASSSGLTLRRQFPQNVICTDYHPELS-LLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQL------ 211 (849)
Q Consensus 139 ~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~-lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l------ 211 (849)
..... +.+| ...|.+|+|||++. +|++++.|++ |++||+..+......
T Consensus 177 ~~~~~-----------~~~~-~~~v~~v~~~p~~~~~l~~~~~d~~-------------v~~wd~~t~~~~~~~~~~~~~ 231 (393)
T 4gq1_A 177 GPILA-----------GYPL-SSPGISVQFRPSNPNQLIVGERNGN-------------IRIFDWTLNLSAEENSQTELV 231 (393)
T ss_dssp EEEEE-----------EEEC-SSCEEEEEEETTEEEEEEEEETTSE-------------EEEEETTCCC----------C
T ss_pred ceeee-----------ecCC-CCCcEEEEECCCCCceEEecCCCCE-------------EEEEECCCCcccccccccCCc
Confidence 54221 2223 45799999999985 7899988874 899998664211110
Q ss_pred -----eeccccc--eeeccCCCccccccceEEEc-cCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccC
Q 003087 212 -----YTTQIEG--LYCEPKGHEVQLAHPKVLIS-PQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLF 283 (849)
Q Consensus 212 -----~~~~~~~--~~~~~~g~~h~~~V~~vafS-PDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~ 283 (849)
.+..... ......+ |...|.+++|+ |||+.|++++.|+++++||+.+... ...+..+..... .-.+.
T Consensus 232 ~~~~~~s~~~~~~~~~~~~~~--~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~-~~~l~~~~~~~~--~~~~~ 306 (393)
T 4gq1_A 232 KNPWLLTLNTLPLVNTCHSSG--IASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANND-YNEISDSTMKLG--PKNLL 306 (393)
T ss_dssp SCCCSEEEESGGGC------C--CSSSCSEEEEETTTTCEEEEECTTSEEEEEEC----------------------CCS
T ss_pred ccceEEecccccceeeeeccc--ccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCC-CceEeeecCccc--cEEEc
Confidence 0100000 0111234 88899999997 8999999999999999999987643 222221110000 00011
Q ss_pred CCC--CCCCCCcEEEEEec--CCEE-EEEEeCCcEEEEEecCCccc
Q 003087 284 DGR--TKPISDITDFAWWS--DNIL-ILARKSSIITMIDVLSGLKV 324 (849)
Q Consensus 284 ~~~--~~~~~~v~~vaws~--D~~l-a~a~~dgti~lwdl~~~~~l 324 (849)
++. .........+.|+| |+.+ ++++.||+|+|||+.+++.+
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~ 352 (393)
T 4gq1_A 307 PNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSN 352 (393)
T ss_dssp CSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCC
T ss_pred cccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEE
Confidence 110 00112223345555 4554 45678999999999988743
No 117
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.88 E-value=3.1e-21 Score=219.07 Aligned_cols=212 Identities=13% Similarity=0.139 Sum_probs=154.9
Q ss_pred CCCCEEEEEECCC-CCEEEEEeCCCcEEEEecCC-----------ccceecccccccccccEEEEEecCCccccccccee
Q 003087 53 GLGASIYGAWSES-HDVLGIVDDTHTVYFFKANG-----------EEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCS 120 (849)
Q Consensus 53 ~~~~v~~vafSPD-G~~LAs~~~dgtIrlWd~~g-----------~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~ 120 (849)
+.+.|++++|+|+ +++||+|+.||+|+||++.. ..+..+..| ...|.+|+|+|++.. .
T Consensus 127 h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h----~~~v~~l~~~~~~~~------~ 196 (430)
T 2xyi_A 127 HEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGH----QKEGYGLSWNPNLNG------Y 196 (430)
T ss_dssp ESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECC----SSCCCCEEECTTSTT------E
T ss_pred CCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCC----CCCeEEEEeCCCCCC------e
Confidence 3678999999998 78999999999999999863 333344332 356888999885431 3
Q ss_pred EEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEcC-CCceEEEEecCCCCccccCCCCCCceeeE
Q 003087 121 FTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHP-ELSLLSVVSNTDTSSLTSSGNSGPCCISL 199 (849)
Q Consensus 121 ~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsP-dg~lLas~g~d~t~~~~~~~~~G~~~I~l 199 (849)
|++++.||+|++|++..+....... .....+. .|...|.+++|+| ++.++|+++.++ .|++
T Consensus 197 l~s~~~dg~i~vwd~~~~~~~~~~~----~~~~~~~-~h~~~v~~v~~~p~~~~~l~s~~~dg-------------~i~i 258 (430)
T 2xyi_A 197 LLSASDDHTICLWDINATPKEHRVI----DAKNIFT-GHTAVVEDVAWHLLHESLFGSVADDQ-------------KLMI 258 (430)
T ss_dssp EEEECTTSCEEEEETTSCCBGGGEE----ECSEEEC-CCSSCEEEEEECSSCTTEEEEEETTS-------------EEEE
T ss_pred EEEEeCCCeEEEEeCCCCCCCCcee----ccceeec-CCCCCEeeeEEeCCCCCEEEEEeCCC-------------eEEE
Confidence 6677899999999998744311100 0112333 3456799999999 778888988886 3899
Q ss_pred EEecCCcCcccceeccccceeeccCCCccccccceEEEccCCC-EEEEEeCCCcEEEEecCCCccccccccccccccccc
Q 003087 200 WRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGK-FVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQV 278 (849)
Q Consensus 200 W~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~-~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~ 278 (849)
|++........+.. ..+ |...|.+|+|+|+|+ +||+++.||+|++||+.+....+..+.
T Consensus 259 ~d~~~~~~~~~~~~---------~~~--~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~--------- 318 (430)
T 2xyi_A 259 WDTRNNNTSKPSHT---------VDA--HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFE--------- 318 (430)
T ss_dssp EETTCSCSSSCSEE---------EEC--CSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEE---------
T ss_pred EECCCCCCCcceeE---------eec--CCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEee---------
Confidence 99876421111111 123 778999999999998 699999999999999987432233332
Q ss_pred ccccCCCCCCCCCCcEEEEEecCCE--EEEEEeCCcEEEEEecCC
Q 003087 279 ADSLFDGRTKPISDITDFAWWSDNI--LILARKSSIITMIDVLSG 321 (849)
Q Consensus 279 ~~~l~~~~~~~~~~v~~vaws~D~~--la~a~~dgti~lwdl~~~ 321 (849)
.|...|.+++|+|++. +++++.||+|+|||+...
T Consensus 319 ---------~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~ 354 (430)
T 2xyi_A 319 ---------SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI 354 (430)
T ss_dssp ---------CCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGT
T ss_pred ---------cCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCC
Confidence 2456799999999883 788999999999999873
No 118
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.88 E-value=1.2e-21 Score=222.22 Aligned_cols=242 Identities=12% Similarity=0.120 Sum_probs=168.0
Q ss_pred cccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCC-c
Q 003087 9 KTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANG-E 86 (849)
Q Consensus 9 ~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g-~ 86 (849)
+.+.|.+++| ||++||+|+ |++|++|+...+ .....+. .+...|.+++|++ .+|++|+.||+|++||+.. +
T Consensus 172 h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~--~~~~~~~-~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~ 244 (435)
T 1p22_A 172 HTGSVLCLQY--DERVIITGSSDSTVRVWDVNTG--EMLNTLI-HHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPT 244 (435)
T ss_dssp CSSCEEEEEC--CSSEEEEEETTSCEEEEESSSC--CEEEEEC-CCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSS
T ss_pred CCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCC--cEEEEEc-CCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCC
Confidence 4578888888 899999998 689999998653 3333333 2367899999974 5999999999999999974 3
Q ss_pred cc---eecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCce
Q 003087 87 EI---TRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNV 163 (849)
Q Consensus 87 ~~---~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V 163 (849)
.. ..+.+ +...|.++.|.. ..+++++.||+|++||+.++.... ++. .|...|
T Consensus 245 ~~~~~~~~~~----~~~~v~~~~~~~---------~~l~s~~~dg~i~vwd~~~~~~~~-----------~~~-~~~~~v 299 (435)
T 1p22_A 245 DITLRRVLVG----HRAAVNVVDFDD---------KYIVSASGDRTIKVWNTSTCEFVR-----------TLN-GHKRGI 299 (435)
T ss_dssp CCEEEEEECC----CSSCEEEEEEET---------TEEEEEETTSEEEEEETTTCCEEE-----------EEE-CCSSCE
T ss_pred CceeeeEecC----CCCcEEEEEeCC---------CEEEEEeCCCeEEEEECCcCcEEE-----------EEc-CCCCcE
Confidence 32 22222 235788888822 146777999999999998765432 233 345679
Q ss_pred EEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCE
Q 003087 164 ICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKF 243 (849)
Q Consensus 164 ~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~ 243 (849)
.+++| +|+++++|+.|++ |++|++.++. .+ ....+ |...|.+++| ||++
T Consensus 300 ~~~~~--~~~~l~~g~~dg~-------------i~iwd~~~~~---~~---------~~~~~--h~~~v~~~~~--~~~~ 348 (435)
T 1p22_A 300 ACLQY--RDRLVVSGSSDNT-------------IRLWDIECGA---CL---------RVLEG--HEELVRCIRF--DNKR 348 (435)
T ss_dssp EEEEE--ETTEEEEEETTSC-------------EEEEETTTCC---EE---------EEECC--CSSCEEEEEC--CSSE
T ss_pred EEEEe--CCCEEEEEeCCCe-------------EEEEECCCCC---EE---------EEEeC--CcCcEEEEEe--cCCE
Confidence 99999 4789999998863 8999987642 11 12234 7889999999 9999
Q ss_pred EEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCEEEEEEeCCcEEEEEecCCcc
Q 003087 244 VATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNILILARKSSIITMIDVLSGLK 323 (849)
Q Consensus 244 LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~la~a~~dgti~lwdl~~~~~ 323 (849)
||+++.||+|++||+.+....... . ...... .+ ..|...|.+++| .+..+++++.||+|+|||+.+...
T Consensus 349 l~sg~~dg~i~vwd~~~~~~~~~~-~-~~~~~~----~~----~~h~~~v~~l~~-~~~~l~s~s~Dg~i~iwd~~~~~~ 417 (435)
T 1p22_A 349 IVSGAYDGKIKVWDLVAALDPRAP-A-GTLCLR----TL----VEHSGRVFRLQF-DEFQIVSSSHDDTILIWDFLNDPA 417 (435)
T ss_dssp EEEEETTSCEEEEEHHHHTSTTSC-T-TTTEEE----EE----CCCSSCCCCEEE-CSSCEEECCSSSEEEEEC------
T ss_pred EEEEeCCCcEEEEECCCCCCcccc-c-cchhee----ec----cCCCCCeEEEEe-CCCEEEEEeCCCEEEEEECCCCCC
Confidence 999999999999999764310000 0 000000 00 135567889999 444688999999999999988764
Q ss_pred c
Q 003087 324 V 324 (849)
Q Consensus 324 l 324 (849)
.
T Consensus 418 ~ 418 (435)
T 1p22_A 418 A 418 (435)
T ss_dssp -
T ss_pred c
Confidence 3
No 119
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.88 E-value=8.7e-21 Score=203.84 Aligned_cols=224 Identities=12% Similarity=0.062 Sum_probs=157.9
Q ss_pred CCCCEEEEEECCCCCEEEEEeCCCcEEEEecCCc-----cceecccccccccccEEEEEecCC--cccccccceeEEEEe
Q 003087 53 GLGASIYGAWSESHDVLGIVDDTHTVYFFKANGE-----EITRFTNKHLKVSLPIIGLIAQDE--TDVQRSCLCSFTVFT 125 (849)
Q Consensus 53 ~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~-----~~~~l~~~~~~~~~~V~~l~fs~~--~~~~~s~~~~~~~~s 125 (849)
|...|++++|||||++||+|+.||+|+|||+... .+..+.. +...|.+++|+|. +. .|++++
T Consensus 10 H~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~d~~-------~l~s~~ 78 (351)
T 3f3f_A 10 HDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRA----HDSSIVAIDWASPEYGR-------IIASAS 78 (351)
T ss_dssp CSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEEC----CSSCEEEEEECCGGGCS-------EEEEEE
T ss_pred cccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceecc----CCCcEEEEEEcCCCCCC-------EEEEEc
Confidence 4678999999999999999999999999999732 2222222 2367999999873 32 367779
Q ss_pred CCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEcCC--CceEEEEecCCCCccccCCCCCCceeeEEEec
Q 003087 126 SDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPE--LSLLSVVSNTDTSSLTSSGNSGPCCISLWRRC 203 (849)
Q Consensus 126 ~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPd--g~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~ 203 (849)
.||+|++||+.++....... .. .....+. .|...|.+++|+|+ |++|++++.|+ .|++|++.
T Consensus 79 ~dg~v~vwd~~~~~~~~~~~-~~-~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~dg-------------~v~iwd~~ 142 (351)
T 3f3f_A 79 YDKTVKLWEEDPDQEECSGR-RW-NKLCTLN-DSKGSLYSVKFAPAHLGLKLACLGNDG-------------ILRLYDAL 142 (351)
T ss_dssp TTSCEEEEEECTTSCTTSSC-SE-EEEEEEC-CCSSCEEEEEECCGGGCSEEEEEETTC-------------EEEEEECS
T ss_pred CCCeEEEEecCCCccccccc-Cc-ceeeeec-ccCCceeEEEEcCCCCCcEEEEecCCC-------------cEEEecCC
Confidence 99999999998764321100 00 0012333 34567999999999 99999999886 38999987
Q ss_pred CCcCcccceecccccee-eccCCCccccccceEEEccC---CCEEEEEeCCCcEEEEecCCCcccccccccccccccccc
Q 003087 204 HNLELEQLYTTQIEGLY-CEPKGHEVQLAHPKVLISPQ---GKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVA 279 (849)
Q Consensus 204 ~~~~~~~l~~~~~~~~~-~~~~g~~h~~~V~~vafSPD---G~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~ 279 (849)
.......+........+ ..+.+ |...+.+++|+|+ +++||+++.||.+.+|+...... .....
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~--------- 209 (351)
T 3f3f_A 143 EPSDLRSWTLTSEMKVLSIPPAN--HLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKL--HVAAK--------- 209 (351)
T ss_dssp STTCTTCCEEEEEEESCSCCCSS--CSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCE--EEEEE---------
T ss_pred ChHHhccccccccccccccccCC--cccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCce--eeeee---------
Confidence 65332222100000000 01223 7789999999998 99999999999998887776532 11110
Q ss_pred cccCCCCCCCCCCcEEEEEecCC-----EEEEEEeCCcEEEEEecCCc
Q 003087 280 DSLFDGRTKPISDITDFAWWSDN-----ILILARKSSIITMIDVLSGL 322 (849)
Q Consensus 280 ~~l~~~~~~~~~~v~~vaws~D~-----~la~a~~dgti~lwdl~~~~ 322 (849)
+ ..|...|.+++|+|++ .+++++.||+|++||+.++.
T Consensus 210 --~----~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~ 251 (351)
T 3f3f_A 210 --L----PGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKL 251 (351)
T ss_dssp --C----CCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC
T ss_pred --c----CCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCc
Confidence 0 1355789999999997 47889999999999998764
No 120
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.88 E-value=6.4e-21 Score=211.11 Aligned_cols=259 Identities=12% Similarity=0.048 Sum_probs=163.1
Q ss_pred ceEEEEEcCCCCeEEEEe--CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCCc--c
Q 003087 12 KQVSLFISPRGERVAVAA--VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANGE--E 87 (849)
Q Consensus 12 ~v~slafSPdG~~LAsas--~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~--~ 87 (849)
.+..++++++++.+|.++ +++|+|||...+ ..+..+. ....|.+++|+|++. +++ .|++|++||+... .
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~--~~~~~~~--~~~~v~~v~~~~~~~--~~~-~~~~i~i~d~~~~~~~ 132 (355)
T 3vu4_A 60 HLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKK--QDVSRIK--VDAPVKDLFLSREFI--VVS-YGDVISVFKFGNPWKR 132 (355)
T ss_dssp CCCEEEECTTSSEEEEECSSTTEEEEEETTTT--EEEEEEE--CSSCEEEEEECSSEE--EEE-ETTEEEEEESSTTCCB
T ss_pred CeEEEEEcCCCCEEEEEECCccEEEEEECCCC--cEEEEEE--CCCceEEEEEcCCEE--EEE-EcCEEEEEECCCCcee
Confidence 577899999999997653 469999997643 3443333 456899999998863 333 3789999999743 4
Q ss_pred ceecccccccccccEEEEEecCCcccccccceeEEE--EeCCCcEEEEEecCCCCcccccccc----cCC-cceeccccC
Q 003087 88 ITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTV--FTSDGFLHQIEISQDPSASISSASA----SSS-GLTLRRQFP 160 (849)
Q Consensus 88 ~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~--~s~Dg~v~lw~~~~~~~~~~~~~~~----~~~-~~~l~~~~~ 160 (849)
+..+.. +...++|++. .+++ .+.||+|++||+.++......+... ... ...+. .|.
T Consensus 133 ~~~~~~-------~~~~~~~s~~---------~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~-~h~ 195 (355)
T 3vu4_A 133 ITDDIR-------FGGVCEFSNG---------LLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIK-AHT 195 (355)
T ss_dssp SSCCEE-------EEEEEEEETT---------EEEEEESSCTTCEEEEECCC------------------CCEEEC-CCS
T ss_pred eEEecc-------CCceEEEEcc---------EEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEE-ccC
Confidence 433322 2223444441 2333 3789999999998754110000000 000 12345 446
Q ss_pred CceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccC
Q 003087 161 QNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQ 240 (849)
Q Consensus 161 ~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPD 240 (849)
..|++++|||||++||+||.|++ .|++|++.++.. +. .+.. .. |...|.+++||||
T Consensus 196 ~~v~~~~~s~~g~~l~s~s~d~~------------~v~iwd~~~~~~---~~------~~~~-g~--h~~~v~~~~~s~~ 251 (355)
T 3vu4_A 196 NPIKMVRLNRKSDMVATCSQDGT------------IIRVFKTEDGVL---VR------EFRR-GL--DRADVVDMKWSTD 251 (355)
T ss_dssp SCEEEEEECTTSSEEEEEETTCS------------EEEEEETTTCCE---EE------EEEC-TT--CCSCEEEEEECTT
T ss_pred CceEEEEECCCCCEEEEEeCCCC------------EEEEEECCCCcE---EE------EEEc-CC--CCCcEEEEEECCC
Confidence 68999999999999999999973 189999876521 11 1110 11 6679999999999
Q ss_pred CCEEEEEeCCCcEEEEecCCCcccccccccccc--ccc-----cc-ccccCCCCCCCCCCcEEEEEecCCE-EEEEEeCC
Q 003087 241 GKFVATSDTNGCLYIFEMDKDNFSLSKFACGER--FDL-----QV-ADSLFDGRTKPISDITDFAWWSDNI-LILARKSS 311 (849)
Q Consensus 241 G~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~--~~~-----~~-~~~l~~~~~~~~~~v~~vaws~D~~-la~a~~dg 311 (849)
|++||+++.||+|+|||+..... .+....... ... .. ...+.+ ........++|++|+. +++++.||
T Consensus 252 ~~~l~s~s~d~~v~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~a~~~d~~~l~~~~~dg 327 (355)
T 3vu4_A 252 GSKLAVVSDKWTLHVFEIFNDQD-NKRHALKGWINMKYFQSEWSLCNFKLSV---DKHVRGCKIAWISESSLVVVWPHTR 327 (355)
T ss_dssp SCEEEEEETTCEEEEEESSCCSC-CCSEETTTTEECCCCCCSSCSEEEECCC---CTTCCCCEEEESSSSEEEEEETTTT
T ss_pred CCEEEEEECCCEEEEEEccCCCC-cccccccceeeccccccccceeEEEecc---CCCCCceEEEEeCCCCEEEEEeCCC
Confidence 99999999999999999986521 111000000 000 00 000111 1112346689999985 67888999
Q ss_pred cEEEEEecCCc
Q 003087 312 IITMIDVLSGL 322 (849)
Q Consensus 312 ti~lwdl~~~~ 322 (849)
.+.+|++..+.
T Consensus 328 ~~~~~~~~~~~ 338 (355)
T 3vu4_A 328 MIETFKVVFDD 338 (355)
T ss_dssp EEEEEEEEEET
T ss_pred eEEEEEEEcCC
Confidence 99999997654
No 121
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.87 E-value=4.4e-20 Score=209.62 Aligned_cols=254 Identities=10% Similarity=0.094 Sum_probs=182.9
Q ss_pred ccccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecC-C
Q 003087 8 RKTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKAN-G 85 (849)
Q Consensus 8 ~~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~-g 85 (849)
.+.+.|++++|+ +++||+|+ |++|++|+...+ .....+. .+...|.+++|+ ++.|++|+.||+|++||+. +
T Consensus 157 ~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~--~~~~~~~-~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~ 229 (445)
T 2ovr_B 157 GHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETG--ECIHTLY-GHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETG 229 (445)
T ss_dssp CCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTT--EEEEEEC-CCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSC
T ss_pred CCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcC--cEEEEEC-CCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCC
Confidence 355789999998 66999997 689999997643 3333333 236689999995 7889999999999999997 5
Q ss_pred ccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEE
Q 003087 86 EEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVIC 165 (849)
Q Consensus 86 ~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~s 165 (849)
+.+..+..+ ...|.++.|.. ..+++++.||+|++||+.++.... ++. .|...|.+
T Consensus 230 ~~~~~~~~~----~~~v~~~~~~~---------~~l~~~~~dg~i~iwd~~~~~~~~-----------~~~-~~~~~v~~ 284 (445)
T 2ovr_B 230 QCLHVLMGH----VAAVRCVQYDG---------RRVVSGAYDFMVKVWDPETETCLH-----------TLQ-GHTNRVYS 284 (445)
T ss_dssp CEEEEEECC----SSCEEEEEECS---------SCEEEEETTSCEEEEEGGGTEEEE-----------EEC-CCSSCEEE
T ss_pred cEEEEEcCC----cccEEEEEECC---------CEEEEEcCCCEEEEEECCCCcEeE-----------Eec-CCCCceEE
Confidence 555555443 25788888822 136777999999999998765432 233 34567999
Q ss_pred EEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEE
Q 003087 166 TDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVA 245 (849)
Q Consensus 166 vafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LA 245 (849)
++| +|+.+++++.|++ |++|++..+. .+. ...+ |...+.++++ +|++|+
T Consensus 285 ~~~--~~~~l~~~~~d~~-------------i~i~d~~~~~---~~~---------~~~~--~~~~v~~~~~--~~~~l~ 333 (445)
T 2ovr_B 285 LQF--DGIHVVSGSLDTS-------------IRVWDVETGN---CIH---------TLTG--HQSLTSGMEL--KDNILV 333 (445)
T ss_dssp EEE--CSSEEEEEETTSC-------------EEEEETTTCC---EEE---------EECC--CCSCEEEEEE--ETTEEE
T ss_pred EEE--CCCEEEEEeCCCe-------------EEEEECCCCC---EEE---------EEcC--CcccEEEEEE--eCCEEE
Confidence 999 8999999998873 8999987642 111 1233 6667766665 788999
Q ss_pred EEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCEEEEEEeCCcEEEEEecCCcccc
Q 003087 246 TSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNILILARKSSIITMIDVLSGLKVK 325 (849)
Q Consensus 246 s~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~la~a~~dgti~lwdl~~~~~l~ 325 (849)
+++.||+|++||+.+++. +..+... ..+...|.+++|. +..+++++.||+|+|||+.+++.+.
T Consensus 334 ~~~~dg~i~vwd~~~~~~-~~~~~~~---------------~~~~~~v~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~ 396 (445)
T 2ovr_B 334 SGNADSTVKIWDIKTGQC-LQTLQGP---------------NKHQSAVTCLQFN-KNFVITSSDDGTVKLWDLKTGEFIR 396 (445)
T ss_dssp EEETTSCEEEEETTTCCE-EEEECST---------------TSCSSCEEEEEEC-SSEEEEEETTSEEEEEETTTCCEEE
T ss_pred EEeCCCeEEEEECCCCcE-EEEEccC---------------CCCCCCEEEEEEC-CCEEEEEeCCCeEEEEECCCCceee
Confidence 999999999999987654 3333210 1255678999995 4568899999999999999987432
Q ss_pred ----ccCCCCCCeEEEEEec
Q 003087 326 ----ETDPKLRGHVFLLESK 341 (849)
Q Consensus 326 ----~~~~~~~g~~~~Le~~ 341 (849)
.....+.+.+..+...
T Consensus 397 ~~~~~~~~~~~~~v~~~~~s 416 (445)
T 2ovr_B 397 NLVTLESGGSGGVVWRIRAS 416 (445)
T ss_dssp EEEECTTGGGTCEEEEEEEC
T ss_pred eeeccccCCCCceEEEEEec
Confidence 1123455666555543
No 122
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.87 E-value=1.4e-20 Score=211.66 Aligned_cols=235 Identities=13% Similarity=0.028 Sum_probs=167.7
Q ss_pred ccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEE-EEeCCCcEEEEecC-Cc
Q 003087 10 TKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLG-IVDDTHTVYFFKAN-GE 86 (849)
Q Consensus 10 ~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LA-s~~~dgtIrlWd~~-g~ 86 (849)
.+.|++++|+|+|+++|+++ +++|++|+.... .....+. .+...+.+++|+|||+.|+ +++.|++|++||+. |+
T Consensus 169 ~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~ 245 (433)
T 3bws_A 169 LGFVETISIPEHNELWVSQMQANAVHVFDLKTL--AYKATVD-LTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKL 245 (433)
T ss_dssp CCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTC--CEEEEEE-CSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTE
T ss_pred CCceeEEEEcCCCEEEEEECCCCEEEEEECCCc--eEEEEEc-CCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCc
Confidence 45799999999999999997 689999997642 3333333 2356789999999999885 55589999999986 55
Q ss_pred cceecccccccccccEEEEEecCCcccccccceeEEEEe--------CCCcEEEEEecCCCCcccccccccCCcceeccc
Q 003087 87 EITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFT--------SDGFLHQIEISQDPSASISSASASSSGLTLRRQ 158 (849)
Q Consensus 87 ~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s--------~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~ 158 (849)
.+..+.. + ..+.+++|+|++.. +++++ .||.|++||+.+++..... .
T Consensus 246 ~~~~~~~-~----~~~~~~~~~~~g~~-------l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-------------~ 300 (433)
T 3bws_A 246 EIRKTDK-I----GLPRGLLLSKDGKE-------LYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-------------G 300 (433)
T ss_dssp EEEECCC-C----SEEEEEEECTTSSE-------EEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-------------E
T ss_pred EEEEecC-C----CCceEEEEcCCCCE-------EEEEECCCCccccCCCeEEEEECCCCcEEeec-------------c
Confidence 5444432 2 34889999886542 33334 4899999999876543221 1
Q ss_pred cCCceEEEEEcCCCceEEEE-ecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEE
Q 003087 159 FPQNVICTDYHPELSLLSVV-SNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLI 237 (849)
Q Consensus 159 ~~~~V~svafsPdg~lLas~-g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vaf 237 (849)
+...+.+++|+|+|+.++++ +.++ .|++|++.++. .+. .+. +...+.+++|
T Consensus 301 ~~~~~~~~~~~~~g~~l~~~~~~~~-------------~v~v~d~~~~~---~~~------~~~------~~~~~~~~~~ 352 (433)
T 3bws_A 301 PPGNKRHIVSGNTENKIYVSDMCCS-------------KIEVYDLKEKK---VQK------SIP------VFDKPNTIAL 352 (433)
T ss_dssp EEECEEEEEECSSTTEEEEEETTTT-------------EEEEEETTTTE---EEE------EEE------CSSSEEEEEE
T ss_pred CCCCcceEEECCCCCEEEEEecCCC-------------EEEEEECCCCc---EEE------Eec------CCCCCCeEEE
Confidence 23368999999999866554 4454 48999987642 111 110 3457889999
Q ss_pred ccCCCEEEEEeC---------------CCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCC
Q 003087 238 SPQGKFVATSDT---------------NGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDN 302 (849)
Q Consensus 238 SPDG~~LAs~s~---------------Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~ 302 (849)
||||++|++++. ||.|++||+.+++. +..+. ....+.+++|+|||
T Consensus 353 s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~-~~~~~-------------------~~~~~~~~~~s~dg 412 (433)
T 3bws_A 353 SPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTV-KEFWE-------------------AGNQPTGLDVSPDN 412 (433)
T ss_dssp CTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEE-EEEEE-------------------CSSSEEEEEECTTS
T ss_pred cCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcE-EEEec-------------------CCCCCceEEEcCCC
Confidence 999999998887 57999999987643 22322 11357899999998
Q ss_pred E-EEEEE-eCCcEEEEEecC
Q 003087 303 I-LILAR-KSSIITMIDVLS 320 (849)
Q Consensus 303 ~-la~a~-~dgti~lwdl~~ 320 (849)
. +++++ .||+|++|++.+
T Consensus 413 ~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 413 RYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp CEEEEEETTTTEEEEEEETT
T ss_pred CEEEEEECCCCeEEEEEecC
Confidence 6 55565 499999999864
No 123
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.86 E-value=2.1e-20 Score=228.03 Aligned_cols=219 Identities=11% Similarity=0.065 Sum_probs=158.5
Q ss_pred ccccceEEEEEcCC--CCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCC--CCEEEEEeCCCcEEEEe
Q 003087 8 RKTKKQVSLFISPR--GERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSES--HDVLGIVDDTHTVYFFK 82 (849)
Q Consensus 8 ~~~~~v~slafSPd--G~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPD--G~~LAs~~~dgtIrlWd 82 (849)
.+.+.|.+++|||+ |++||+|+ |++|++|+..++.......+. .+...|.+++|||+ |++|++|+.||+|++||
T Consensus 51 ~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~-~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwd 129 (753)
T 3jro_A 51 GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHA-VHSASVNSVQWAPHEYGPLLLVASSDGKVSVVE 129 (753)
T ss_dssp CCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEEC-CCSSCEEEEEECCGGGCSEEEEEETTSEEEEEE
T ss_pred CCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCccccccccc-CCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEE
Confidence 35578999999999 99999998 689999997653111222222 23678999999999 99999999999999999
Q ss_pred cCCc---cceecccccccccccEEEEEecCCcc-----cccc-cceeEEEEeCCCcEEEEEecCCCCcccccccccCCcc
Q 003087 83 ANGE---EITRFTNKHLKVSLPIIGLIAQDETD-----VQRS-CLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGL 153 (849)
Q Consensus 83 ~~g~---~~~~l~~~~~~~~~~V~~l~fs~~~~-----~~~s-~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~ 153 (849)
+.+. ....+.. +...|.++.|+|... .... ....+++++.||+|++||+.++....... .
T Consensus 130 l~~~~~~~~~~~~~----~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~-------~ 198 (753)
T 3jro_A 130 FKENGTTSPIIIDA----HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLE-------S 198 (753)
T ss_dssp CCSSSCCCCEEEEC----CSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEE-------E
T ss_pred eecCCCcceeEeec----CCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceee-------e
Confidence 9743 2222222 235799999988421 0011 12358888999999999998764321111 1
Q ss_pred eeccccCCceEEEEEcCC---CceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCcccc
Q 003087 154 TLRRQFPQNVICTDYHPE---LSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQL 230 (849)
Q Consensus 154 ~l~~~~~~~V~svafsPd---g~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~ 230 (849)
++. .|...|.+++|+|+ |++|+++|.|++ |++|++..+...... ......+ |..
T Consensus 199 ~~~-~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~-------------I~iwd~~~~~~~~~~-------~~~~~~~--~~~ 255 (753)
T 3jro_A 199 TLE-GHSDWVRDVAWSPTVLLRSYLASVSQDRT-------------CIIWTQDNEQGPWKK-------TLLKEEK--FPD 255 (753)
T ss_dssp EEC-CCSSCEEEEEECCCCSSSEEEEEEESSSC-------------EEEEEESSSSSCCBC-------CBSSSSC--CSS
T ss_pred eec-CCCCcEEEEEeccCCCCCCEEEEEecCCE-------------EEEecCCCCCCccee-------EEeccCC--CCC
Confidence 334 34567999999999 999999999873 899999875211000 0111223 778
Q ss_pred ccceEEEccCCCEEEEEeCCCcEEEEecCCC
Q 003087 231 AHPKVLISPQGKFVATSDTNGCLYIFEMDKD 261 (849)
Q Consensus 231 ~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~ 261 (849)
.|.+++|||||++||+++.||+|++|++.+.
T Consensus 256 ~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 256 VLWRASWSLSGNVLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp CCCCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred ceEEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence 9999999999999999999999999999864
No 124
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.86 E-value=1.7e-20 Score=204.21 Aligned_cols=208 Identities=12% Similarity=0.090 Sum_probs=144.9
Q ss_pred cccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEE--CCCCCEEEEEeCCCcEEEEecC-
Q 003087 9 KTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAW--SESHDVLGIVDDTHTVYFFKAN- 84 (849)
Q Consensus 9 ~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vaf--SPDG~~LAs~~~dgtIrlWd~~- 84 (849)
+.+.|.+++|+|||++||+++ |++|++|+...+ .... . ..+...|.+++| +|+|++|++|+.||+|++||+.
T Consensus 85 h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~--~~~~-~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 160 (368)
T 3mmy_A 85 HTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSN--QAIQ-I-AQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRS 160 (368)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT--EEEE-E-EECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSC
T ss_pred ccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCC--Ccee-e-ccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCC
Confidence 457899999999999999998 689999997653 2222 1 224678999999 9999999999999999999986
Q ss_pred CccceecccccccccccEEEEEecCCccc---------cc-----------------------------c-cceeEEEEe
Q 003087 85 GEEITRFTNKHLKVSLPIIGLIAQDETDV---------QR-----------------------------S-CLCSFTVFT 125 (849)
Q Consensus 85 g~~~~~l~~~~~~~~~~V~~l~fs~~~~~---------~~-----------------------------s-~~~~~~~~s 125 (849)
++.+..+..+. .+..+.+.++... .+ . ....+++++
T Consensus 161 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (368)
T 3mmy_A 161 SNPMMVLQLPE-----RCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGS 235 (368)
T ss_dssp SSCSEEEECSS-----CEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEE
T ss_pred CcEEEEEecCC-----CceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEec
Confidence 55554443321 1222211110000 00 0 001278889
Q ss_pred CCCcEEEEEecCCCCcccccccccCCcceecccc-----------CCceEEEEEcCCCceEEEEecCCCCccccCCCCCC
Q 003087 126 SDGFLHQIEISQDPSASISSASASSSGLTLRRQF-----------PQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGP 194 (849)
Q Consensus 126 ~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~-----------~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~ 194 (849)
.||.|++|++......... ..+.+|. ...|.+++|||+|++||+++.|++
T Consensus 236 ~dg~i~i~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~----------- 296 (368)
T 3mmy_A 236 IEGRVAIHYINPPNPAKDN--------FTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGR----------- 296 (368)
T ss_dssp TTSEEEEEESSCSCHHHHS--------EEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSC-----------
T ss_pred CCCcEEEEecCCCCccccc--------eeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCe-----------
Confidence 9999999999765321110 1222221 125999999999999999999973
Q ss_pred ceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEEeCCCcEEEEecCC
Q 003087 195 CCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDK 260 (849)
Q Consensus 195 ~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~ 260 (849)
|++|++..+. .+ ....+ |...|.+++|||||++||+++.||..+.|++..
T Consensus 297 --i~iwd~~~~~---~~---------~~~~~--~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~ 346 (368)
T 3mmy_A 297 --FSFWDKDART---KL---------KTSEQ--LDQPISACCFNHNGNIFAYASSYDWSKGHEFYN 346 (368)
T ss_dssp --EEEEETTTTE---EE---------EECCC--CSSCEEEEEECTTSSCEEEEECCCSTTCGGGCC
T ss_pred --EEEEECCCCc---EE---------EEecC--CCCCceEEEECCCCCeEEEEecccccccccccC
Confidence 8999987642 11 12234 778999999999999999999998777666543
No 125
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.85 E-value=2e-20 Score=210.54 Aligned_cols=249 Identities=8% Similarity=-0.020 Sum_probs=171.7
Q ss_pred cceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeee----ecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecC-
Q 003087 11 KKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFN----CTGLGASIYGAWSESHDVLGIVDDTHTVYFFKAN- 84 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~----~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~- 84 (849)
+.+.+++|||+|+++++++ +++|++|+..++ ....... ..+...+.+++|+|+|+++++++.|++|++||+.
T Consensus 123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~ 200 (433)
T 3bws_A 123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSG--QTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKT 200 (433)
T ss_dssp SCBCCCEESSSSEEEEEBTTSSSEEEEETTTC--CEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTT
T ss_pred CCceEEEEeCCCeEEEEeCCCCeEEEEECCCC--eEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCC
Confidence 3466899999777777776 468999997653 2222111 1235578999999999999999999999999987
Q ss_pred CccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceE
Q 003087 85 GEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVI 164 (849)
Q Consensus 85 g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~ 164 (849)
++.+..+..+ ...+.+++|+|++... +++.+.||.|++||+.++..... +. . ...+.
T Consensus 201 ~~~~~~~~~~----~~~~~~~~~~~~~~~l------~~~~~~~~~i~~~d~~~~~~~~~-----------~~-~-~~~~~ 257 (433)
T 3bws_A 201 LAYKATVDLT----GKWSKILLYDPIRDLV------YCSNWISEDISVIDRKTKLEIRK-----------TD-K-IGLPR 257 (433)
T ss_dssp CCEEEEEECS----SSSEEEEEEETTTTEE------EEEETTTTEEEEEETTTTEEEEE-----------CC-C-CSEEE
T ss_pred ceEEEEEcCC----CCCeeEEEEcCCCCEE------EEEecCCCcEEEEECCCCcEEEE-----------ec-C-CCCce
Confidence 4555554322 2468899998865321 23335799999999986654322 12 1 23599
Q ss_pred EEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCE-
Q 003087 165 CTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKF- 243 (849)
Q Consensus 165 svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~- 243 (849)
+++|+|+|+.|++++.++. .+. +..| .|++|++.++. .+.. + + |...+..++|+|||+.
T Consensus 258 ~~~~~~~g~~l~~~~~~~~-~~~--~~dg--~i~~~d~~~~~---~~~~------~----~--~~~~~~~~~~~~~g~~l 317 (433)
T 3bws_A 258 GLLLSKDGKELYIAQFSAS-NQE--SGGG--RLGIYSMDKEK---LIDT------I----G--PPGNKRHIVSGNTENKI 317 (433)
T ss_dssp EEEECTTSSEEEEEEEESC-TTC--SCCE--EEEEEETTTTE---EEEE------E----E--EEECEEEEEECSSTTEE
T ss_pred EEEEcCCCCEEEEEECCCC-ccc--cCCC--eEEEEECCCCc---EEee------c----c--CCCCcceEEECCCCCEE
Confidence 9999999999988875320 000 0112 48999987642 1110 1 1 4457789999999975
Q ss_pred EEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EEEEEe-------------
Q 003087 244 VATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LILARK------------- 309 (849)
Q Consensus 244 LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~a~~------------- 309 (849)
+++++.||+|++||+.+++. +..++ +...+..++|+|||. ++++..
T Consensus 318 ~~~~~~~~~v~v~d~~~~~~-~~~~~-------------------~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g 377 (433)
T 3bws_A 318 YVSDMCCSKIEVYDLKEKKV-QKSIP-------------------VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKG 377 (433)
T ss_dssp EEEETTTTEEEEEETTTTEE-EEEEE-------------------CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCC
T ss_pred EEEecCCCEEEEEECCCCcE-EEEec-------------------CCCCCCeEEEcCCCCEEEEEecCCCcccccccccc
Confidence 56678999999999997643 22221 124578999999986 566654
Q ss_pred --CCcEEEEEecCCccc
Q 003087 310 --SSIITMIDVLSGLKV 324 (849)
Q Consensus 310 --dgti~lwdl~~~~~l 324 (849)
||.|.+||+.+++.+
T Consensus 378 ~~dg~v~~~d~~~~~~~ 394 (433)
T 3bws_A 378 LVLGKVYVIDTTTDTVK 394 (433)
T ss_dssp SSCCEEEEEETTTTEEE
T ss_pred ccceEEEEEECCCCcEE
Confidence 579999999988743
No 126
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.84 E-value=6.8e-19 Score=199.42 Aligned_cols=248 Identities=10% Similarity=0.065 Sum_probs=168.8
Q ss_pred CCeEEEEe-C------CeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCC---cEEEEecCCccceec
Q 003087 22 GERVAVAA-V------NQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTH---TVYFFKANGEEITRF 91 (849)
Q Consensus 22 G~~LAsas-~------~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dg---tIrlWd~~g~~~~~l 91 (849)
|..||.++ + ++|.+|+..+. ....+.. +...+.+++|||||+.||+++.++ +|++||+.+.....+
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~---~~~~l~~-~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l 218 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDGY---NQFVVHR-SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV 218 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTSC---SCEEEEE-ESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEE
T ss_pred CCEEEEEEecCCCCccceEEEEcCCCC---CCEEEeC-CCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEe
Confidence 77777765 2 58999997632 2223332 356799999999999999999885 999999975544455
Q ss_pred ccccccccccEEEEEecCCcccccccceeEEEEeCCCc--EEEEEecCCCCcccccccccCCcceeccccCCceEEEEEc
Q 003087 92 TNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGF--LHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYH 169 (849)
Q Consensus 92 ~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~--v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafs 169 (849)
..+. ..+.+++|+|++.... ++.+.||. |.+||+.++.... +. .+...+.+++||
T Consensus 219 ~~~~----~~~~~~~~spdg~~la------~~~~~~g~~~i~~~d~~~~~~~~------------l~-~~~~~~~~~~~s 275 (415)
T 2hqs_A 219 ASFP----RHNGAPAFSPDGSKLA------FALSKTGSLNLYVMDLASGQIRQ------------VT-DGRSNNTEPTWF 275 (415)
T ss_dssp ECCS----SCEEEEEECTTSSEEE------EEECTTSSCEEEEEETTTCCEEE------------CC-CCSSCEEEEEEC
T ss_pred ecCC----CcccCEEEcCCCCEEE------EEEecCCCceEEEEECCCCCEEe------------Cc-CCCCcccceEEC
Confidence 4332 4688999999765321 23355554 8889987655421 22 234569999999
Q ss_pred CCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEEeC
Q 003087 170 PELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDT 249 (849)
Q Consensus 170 Pdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~ 249 (849)
|||+.|++++.++ |...|.+|++.++. ...+ .. |...+.+++|||||++||+++.
T Consensus 276 pdg~~l~~~s~~~----------g~~~i~~~d~~~~~-~~~l------------~~--~~~~~~~~~~spdG~~l~~~~~ 330 (415)
T 2hqs_A 276 PDSQNLAFTSDQA----------GRPQVYKVNINGGA-PQRI------------TW--EGSQNQDADVSSDGKFMVMVSS 330 (415)
T ss_dssp TTSSEEEEEECTT----------SSCEEEEEETTSSC-CEEC------------CC--SSSEEEEEEECTTSSEEEEEEE
T ss_pred CCCCEEEEEECCC----------CCcEEEEEECCCCC-EEEE------------ec--CCCcccCeEECCCCCEEEEEEC
Confidence 9999998887643 22246667766542 1111 11 3457889999999999999987
Q ss_pred C---CcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EEEEEeCC---cEEEEEecCCc
Q 003087 250 N---GCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LILARKSS---IITMIDVLSGL 322 (849)
Q Consensus 250 D---gtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~a~~dg---ti~lwdl~~~~ 322 (849)
+ +.|.+||+.+++. ..+. .+ ..+.+++|+|||. |+.++.++ .|.+||+.++.
T Consensus 331 ~~g~~~i~~~d~~~~~~--~~l~------------------~~-~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~ 389 (415)
T 2hqs_A 331 NGGQQHIAKQDLATGGV--QVLS------------------ST-FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF 389 (415)
T ss_dssp CSSCEEEEEEETTTCCE--EECC------------------CS-SSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC
T ss_pred cCCceEEEEEECCCCCE--EEec------------------CC-CCcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCc
Confidence 5 6899999997643 2221 11 2578999999986 66676666 79999987554
Q ss_pred cccccCCCCCCeEEEEEecccc
Q 003087 323 KVKETDPKLRGHVFLLESKSVE 344 (849)
Q Consensus 323 ~l~~~~~~~~g~~~~Le~~~~~ 344 (849)
. . .-+.+.|.+..+...+..
T Consensus 390 ~-~-~l~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 390 K-A-RLPATDGQVKFPAWSPYL 409 (415)
T ss_dssp E-E-ECCCSSSEEEEEEECCCC
T ss_pred E-E-EeeCCCCCCcCCcccccc
Confidence 2 1 234467788777775543
No 127
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.83 E-value=5.5e-19 Score=200.18 Aligned_cols=217 Identities=14% Similarity=0.133 Sum_probs=152.5
Q ss_pred cceEEEEEcCCCCeEEEEeC-C---eEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEE-EEeCCCc--EEEEec
Q 003087 11 KKQVSLFISPRGERVAVAAV-N---QVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLG-IVDDTHT--VYFFKA 83 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas~-~---~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LA-s~~~dgt--IrlWd~ 83 (849)
+.|.+++|||||++||+++. + +|.+|+..++ ... .+. .+...+.+++|||||+.|| +++.||. |++||+
T Consensus 179 ~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg--~~~-~l~-~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~ 254 (415)
T 2hqs_A 179 QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG--AVR-QVA-SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL 254 (415)
T ss_dssp SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC--CEE-EEE-CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET
T ss_pred CcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCC--cEE-Eee-cCCCcccCEEEcCCCCEEEEEEecCCCceEEEEEC
Confidence 57899999999999999973 3 8999998653 222 222 2345789999999999999 6666655 999999
Q ss_pred CCccceecccccccccccEEEEEecCCcccccccceeEEEEeC-CC--cEEEEEecCCCCcccccccccCCcceeccccC
Q 003087 84 NGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTS-DG--FLHQIEISQDPSASISSASASSSGLTLRRQFP 160 (849)
Q Consensus 84 ~g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~-Dg--~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~ 160 (849)
.+..+..+..+. ..+.+++|+|++.. ++..+. +| .|.+|++.++.... +. .+.
T Consensus 255 ~~~~~~~l~~~~----~~~~~~~~spdg~~-------l~~~s~~~g~~~i~~~d~~~~~~~~------------l~-~~~ 310 (415)
T 2hqs_A 255 ASGQIRQVTDGR----SNNTEPTWFPDSQN-------LAFTSDQAGRPQVYKVNINGGAPQR------------IT-WEG 310 (415)
T ss_dssp TTCCEEECCCCS----SCEEEEEECTTSSE-------EEEEECTTSSCEEEEEETTSSCCEE------------CC-CSS
T ss_pred CCCCEEeCcCCC----CcccceEECCCCCE-------EEEEECCCCCcEEEEEECCCCCEEE------------Ee-cCC
Confidence 866556665433 46889999997643 333343 56 56666766554321 11 223
Q ss_pred CceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccC
Q 003087 161 QNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQ 240 (849)
Q Consensus 161 ~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPD 240 (849)
..+.+++|||||+.||+++.++ |...|.+|++.++.. ..+ .+ | ..+.+++||||
T Consensus 311 ~~~~~~~~spdG~~l~~~~~~~----------g~~~i~~~d~~~~~~-~~l------------~~--~-~~~~~~~~spd 364 (415)
T 2hqs_A 311 SQNQDADVSSDGKFMVMVSSNG----------GQQHIAKQDLATGGV-QVL------------SS--T-FLDETPSLAPN 364 (415)
T ss_dssp SEEEEEEECTTSSEEEEEEECS----------SCEEEEEEETTTCCE-EEC------------CC--S-SSCEEEEECTT
T ss_pred CcccCeEECCCCCEEEEEECcC----------CceEEEEEECCCCCE-EEe------------cC--C-CCcCCeEEcCC
Confidence 4689999999999999888763 223589999876421 111 11 3 27889999999
Q ss_pred CCEEEEEeCCC---cEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecC
Q 003087 241 GKFVATSDTNG---CLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSD 301 (849)
Q Consensus 241 G~~LAs~s~Dg---tv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D 301 (849)
|++|++++.++ .|.+||+.+.. +..++ .+...|.+++|+|-
T Consensus 365 g~~l~~~s~~~~~~~l~~~d~~g~~--~~~l~------------------~~~~~v~~~~~~~~ 408 (415)
T 2hqs_A 365 GTMVIYSSSQGMGSVLNLVSTDGRF--KARLP------------------ATDGQVKFPAWSPY 408 (415)
T ss_dssp SSEEEEEEEETTEEEEEEEETTSCC--EEECC------------------CSSSEEEEEEECCC
T ss_pred CCEEEEEEcCCCccEEEEEECCCCc--EEEee------------------CCCCCCcCCccccc
Confidence 99999999887 89999998652 23332 23467999999984
No 128
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.83 E-value=2.4e-19 Score=198.76 Aligned_cols=225 Identities=8% Similarity=0.084 Sum_probs=157.4
Q ss_pred CeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEE-EEEeCCCcEEEEecC-Cccceeccccccccc
Q 003087 23 ERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVL-GIVDDTHTVYFFKAN-GEEITRFTNKHLKVS 99 (849)
Q Consensus 23 ~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~L-As~~~dgtIrlWd~~-g~~~~~l~~~~~~~~ 99 (849)
.++++++ +++|++|+...+ +....+. ++..+.+++|||||++| ++++.|++|++||+. |+.+..+..+
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~--~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~----- 73 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSN--KVTATIP--VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAG----- 73 (391)
T ss_dssp EEEEEETTTTEEEEEETTTT--EEEEEEE--CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECS-----
T ss_pred EEEEEcCCCCEEEEEECCCC--eEEEEee--cCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECC-----
Confidence 3566665 689999997643 3333332 35668999999999987 677799999999996 5555444332
Q ss_pred ccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEcCCCceEE-EE
Q 003087 100 LPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLS-VV 178 (849)
Q Consensus 100 ~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLa-s~ 178 (849)
..+.+++|+|++... +++.+.||+|++||+.+++.... +. + ...+.+++|+|||+.|+ ++
T Consensus 74 ~~v~~~~~spdg~~l------~~~~~~~~~v~v~d~~~~~~~~~-----------~~-~-~~~~~~~~~s~dg~~l~~~~ 134 (391)
T 1l0q_A 74 SSPQGVAVSPDGKQV------YVTNMASSTLSVIDTTSNTVAGT-----------VK-T-GKSPLGLALSPDGKKLYVTN 134 (391)
T ss_dssp SSEEEEEECTTSSEE------EEEETTTTEEEEEETTTTEEEEE-----------EE-C-SSSEEEEEECTTSSEEEEEE
T ss_pred CCccceEECCCCCEE------EEEECCCCEEEEEECCCCeEEEE-----------Ee-C-CCCcceEEECCCCCEEEEEe
Confidence 368899999865421 12335679999999987654322 12 2 23589999999999885 44
Q ss_pred ecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEE-EEEeCCCcEEEEe
Q 003087 179 SNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFV-ATSDTNGCLYIFE 257 (849)
Q Consensus 179 g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~L-As~s~Dgtv~LWd 257 (849)
+.++ .|++|++.++. .+. .+. +...+..++|+|||+.| ++++.||+|++||
T Consensus 135 ~~~~-------------~v~~~d~~~~~---~~~------~~~------~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d 186 (391)
T 1l0q_A 135 NGDK-------------TVSVINTVTKA---VIN------TVS------VGRSPKGIAVTPDGTKVYVANFDSMSISVID 186 (391)
T ss_dssp TTTT-------------EEEEEETTTTE---EEE------EEE------CCSSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CCCC-------------EEEEEECCCCc---EEE------EEe------cCCCcceEEECCCCCEEEEEeCCCCEEEEEE
Confidence 4443 48999987642 111 111 12356899999999988 6778899999999
Q ss_pred cCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EEEEE---eCCcEEEEEecCCcc
Q 003087 258 MDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LILAR---KSSIITMIDVLSGLK 323 (849)
Q Consensus 258 ~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~a~---~dgti~lwdl~~~~~ 323 (849)
+.+++. +..+. +...+..++|+||+. +++++ .++.|++||+.+++.
T Consensus 187 ~~~~~~-~~~~~-------------------~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~ 236 (391)
T 1l0q_A 187 TVTNSV-IDTVK-------------------VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKI 236 (391)
T ss_dssp TTTTEE-EEEEE-------------------CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEE
T ss_pred CCCCeE-EEEEe-------------------cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeE
Confidence 987643 22221 123578899999985 56666 689999999998764
No 129
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.82 E-value=8.2e-19 Score=184.34 Aligned_cols=233 Identities=14% Similarity=0.059 Sum_probs=154.4
Q ss_pred cceEEEEEcCCCCeEEEEeCCeEEEEecCC-CCCcceeeeeecCCCCEEEEEECCCCCEEEEEe--CCCcEEEEec--CC
Q 003087 11 KKQVSLFISPRGERVAVAAVNQVTILQKDD-DYQEPCGIFNCTGLGASIYGAWSESHDVLGIVD--DTHTVYFFKA--NG 85 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas~~~i~iw~~~~-~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~--~dgtIrlWd~--~g 85 (849)
+.|.+++|||||++||+++++.|.+|+..+ + .+......+....+.+++|||||++|++++ .++.++||.+ .+
T Consensus 42 ~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~ 119 (297)
T 2ojh_A 42 ELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDP--SPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTG 119 (297)
T ss_dssp SCCEEEEECTTSSEEEEEETTEEEEEESSSCC--SCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTC
T ss_pred cceEeeEECCCCCEEEEEcCCeEEEEeCCCCC--CceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCC
Confidence 578999999999999999999999999764 3 222222111135678899999999999999 4455666654 55
Q ss_pred ccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEE
Q 003087 86 EEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVIC 165 (849)
Q Consensus 86 ~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~s 165 (849)
.....+..+ ..+..++|+|++... +++.+.||.+++|++...... . ..+. .+...+.+
T Consensus 120 ~~~~~~~~~-----~~~~~~~~spdg~~l------~~~~~~~~~~~l~~~~~~~~~-~---------~~~~-~~~~~~~~ 177 (297)
T 2ojh_A 120 GTPRLMTKN-----LPSYWHGWSPDGKSF------TYCGIRDQVFDIYSMDIDSGV-E---------TRLT-HGEGRNDG 177 (297)
T ss_dssp CCCEECCSS-----SSEEEEEECTTSSEE------EEEEEETTEEEEEEEETTTCC-E---------EECC-CSSSCEEE
T ss_pred CceEEeecC-----CCccceEECCCCCEE------EEEECCCCceEEEEEECCCCc-c---------eEcc-cCCCcccc
Confidence 554544332 247788998865421 234578999999998643211 0 1122 23456999
Q ss_pred EEEcCCCceEEEEec-CCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEE
Q 003087 166 TDYHPELSLLSVVSN-TDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFV 244 (849)
Q Consensus 166 vafsPdg~lLas~g~-d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~L 244 (849)
++|+|||+.|++++. ++ .+++|++.... ..+. .... |...+..++|||||++|
T Consensus 178 ~~~s~dg~~l~~~~~~~~-------------~~~i~~~~~~~--~~~~---------~~~~--~~~~~~~~~~s~dg~~l 231 (297)
T 2ojh_A 178 PDYSPDGRWIYFNSSRTG-------------QMQIWRVRVDG--SSVE---------RITD--SAYGDWFPHPSPSGDKV 231 (297)
T ss_dssp EEECTTSSEEEEEECTTS-------------SCEEEEEETTS--SCEE---------ECCC--CSEEEEEEEECTTSSEE
T ss_pred ceECCCCCEEEEEecCCC-------------CccEEEECCCC--CCcE---------EEec--CCcccCCeEECCCCCEE
Confidence 999999998887765 43 27889886321 0110 1112 45578899999999999
Q ss_pred EEEeCC-----------CcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EEEEEeC
Q 003087 245 ATSDTN-----------GCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LILARKS 310 (849)
Q Consensus 245 As~s~D-----------gtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~a~~d 310 (849)
|+++.+ +.|.+||+.++.. ..... + ..+...+..++|+||+. |++++.+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~--~~~~~-----------~----~~~~~~~~~~~~spdg~~l~~~~~~ 292 (297)
T 2ojh_A 232 VFVSYDADVFDHPRDLDVRVQLMDMDGGNV--ETLFD-----------L----FGGQGTMNSPNWSPDGDEFAYVRYF 292 (297)
T ss_dssp EEEEEETTCCSCCSSEEEEEEEEETTSCSC--EEEEE-----------E----EESTTTSCSCCBCTTSSEEEEEEEC
T ss_pred EEEEcCCCCCcccccCceEEEEEecCCCCc--eeeec-----------c----CCCCcccccceECCCCCEEEEEEec
Confidence 999876 5699999987632 11110 0 01234567789999986 5555543
No 130
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.81 E-value=1.6e-18 Score=189.53 Aligned_cols=261 Identities=12% Similarity=0.055 Sum_probs=157.0
Q ss_pred cceEEEEEcCCCCeEEEEe---CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEe-CCCcEEEEecC-C
Q 003087 11 KKQVSLFISPRGERVAVAA---VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVD-DTHTVYFFKAN-G 85 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas---~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~-~dgtIrlWd~~-g 85 (849)
..+..++|||||++++++. ++.|.+|+..++....+..... +...+..++|||||++|++++ .+++|++|++. +
T Consensus 40 ~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~-~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~ 118 (347)
T 3hfq_A 40 QNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVA-PGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAAD 118 (347)
T ss_dssp SCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEE-ESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTT
T ss_pred CCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeec-CCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCC
Confidence 4567799999999444443 3689999975432222222221 234567899999999999888 78999999985 2
Q ss_pred ccceecccc--ccc------ccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecC-CCCcccccccccCCcceec
Q 003087 86 EEITRFTNK--HLK------VSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQ-DPSASISSASASSSGLTLR 156 (849)
Q Consensus 86 ~~~~~l~~~--~~~------~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~-~~~~~~~~~~~~~~~~~l~ 156 (849)
..+..+... ... ....+.+++|+|++.. +++...++.|++|++.. +..... . .+.
T Consensus 119 g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l-------~v~~~~~~~v~~~~~~~~g~~~~~-~--------~~~ 182 (347)
T 3hfq_A 119 GALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRL-------AVIDLGSDKVYVYNVSDAGQLSEQ-S--------VLT 182 (347)
T ss_dssp SCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCE-------EEEETTTTEEEEEEECTTSCEEEE-E--------EEE
T ss_pred CCeeecceeecCCCCCCccccCCCceEEEECCCCcE-------EEEeCCCCEEEEEEECCCCcEEEe-e--------eEE
Confidence 222222110 000 1124778999987652 33335688999999983 332111 0 111
Q ss_pred cccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCc-Ccccceeccccceeec-cCCCccccccce
Q 003087 157 RQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNL-ELEQLYTTQIEGLYCE-PKGHEVQLAHPK 234 (849)
Q Consensus 157 ~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~-~~~~l~~~~~~~~~~~-~~g~~h~~~V~~ 234 (849)
......+..++|||||+.|++++..+ + .|.+|+++... .+..+.. +.. +.+......+..
T Consensus 183 ~~~g~~p~~~~~spdg~~l~v~~~~~----------~--~v~v~~~~~~~g~~~~~~~------~~~~~~~~~~~~~~~~ 244 (347)
T 3hfq_A 183 MEAGFGPRHLVFSPDGQYAFLAGELS----------S--QIASLKYDTQTGAFTQLGI------VKTIPADYTAHNGAAA 244 (347)
T ss_dssp CCTTCCEEEEEECTTSSEEEEEETTT----------T--EEEEEEEETTTTEEEEEEE------EESSCTTCCSCCEEEE
T ss_pred cCCCCCCceEEECCCCCEEEEEeCCC----------C--EEEEEEecCCCCceEEeee------eeecCCCCCCCCccee
Confidence 11123578899999999877765443 2 48899987521 1111111 000 011001245778
Q ss_pred EEEccCCCEE-EEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EEEEEe-CC
Q 003087 235 VLISPQGKFV-ATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LILARK-SS 311 (849)
Q Consensus 235 vafSPDG~~L-As~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~a~~-dg 311 (849)
++|||||++| ++...+++|.+|++..... +..... +. .+...+..++|+|||+ |+++.. ++
T Consensus 245 i~~spdG~~l~v~~~~~~~v~v~~~~~~g~-~~~~~~-----------~~----~~~~~~~~~~~spdg~~l~v~~~~~~ 308 (347)
T 3hfq_A 245 IRLSHDGHFLYVSNRGYNTLAVFAVTADGH-LTLIQQ-----------IS----TEGDFPRDFDLDPTEAFVVVVNQNTD 308 (347)
T ss_dssp EEECTTSCEEEEEEETTTEEEEEEECGGGC-EEEEEE-----------EE----CSSSCCCEEEECTTSSEEEEEETTTT
T ss_pred EEECCCCCEEEEEeCCCCEEEEEEECCCCc-EEEeEE-----------Ee----cCCCCcCeEEECCCCCEEEEEEcCCC
Confidence 9999999988 5556699999999973211 111110 00 1123467899999996 666664 58
Q ss_pred cEEEEEec--CCc
Q 003087 312 IITMIDVL--SGL 322 (849)
Q Consensus 312 ti~lwdl~--~~~ 322 (849)
+|.+|++. +++
T Consensus 309 ~v~v~~~d~~tg~ 321 (347)
T 3hfq_A 309 NATLYARDLTSGK 321 (347)
T ss_dssp EEEEEEECTTTCC
T ss_pred cEEEEEEeCCCCe
Confidence 99999664 454
No 131
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.81 E-value=2.8e-19 Score=216.19 Aligned_cols=263 Identities=8% Similarity=0.062 Sum_probs=165.6
Q ss_pred ccceEEEEEcCCCCeEEEEe--CC-----eEEEEecCCCCCcceeeeeecC-C----------------------CCEEE
Q 003087 10 TKKQVSLFISPRGERVAVAA--VN-----QVTILQKDDDYQEPCGIFNCTG-L----------------------GASIY 59 (849)
Q Consensus 10 ~~~v~slafSPdG~~LAsas--~~-----~i~iw~~~~~~~~~~~~~~~~~-~----------------------~~v~~ 59 (849)
.+.|.+++|||||++||+++ ++ +|.+|+..++ ........++ . ..+.+
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 113 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSG--QTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVD 113 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTC--CEEEEECGGGTC--------------------CCEESCC
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCC--ceeEccchhhcccccccccchhhhhhhhhhhccccCcce
Confidence 35689999999999999987 45 7999997653 2222222111 1 23678
Q ss_pred EEECCCCCEEEEEeCCCcEEEEecCCc---cceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEec
Q 003087 60 GAWSESHDVLGIVDDTHTVYFFKANGE---EITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEIS 136 (849)
Q Consensus 60 vafSPDG~~LAs~~~dgtIrlWd~~g~---~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~ 136 (849)
++|||||++||+++. ++|++||+.+. .+..+..+ ...+.+++|+||+.. ++. +.++.|.+|++.
T Consensus 114 ~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~----~~~~~~~~~SPDG~~-------la~-~~~~~i~~~d~~ 180 (741)
T 2ecf_A 114 YQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHG----EGFATDAKLSPKGGF-------VSF-IRGRNLWVIDLA 180 (741)
T ss_dssp CEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCS----SSCEEEEEECTTSSE-------EEE-EETTEEEEEETT
T ss_pred eEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccC----CcccccccCCCCCCE-------EEE-EeCCcEEEEecC
Confidence 999999999999987 99999999866 55555443 246889999998753 222 346799999998
Q ss_pred CCCCcccccccccCCcceeccccC--------CceEEEEEcCCCceEEEEecCCCC-ccc------------------cC
Q 003087 137 QDPSASISSASASSSGLTLRRQFP--------QNVICTDYHPELSLLSVVSNTDTS-SLT------------------SS 189 (849)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~l~~~~~--------~~V~svafsPdg~lLas~g~d~t~-~~~------------------~~ 189 (849)
++....... .....+..+.. ..+.+++|||||+.||+++.+++. ..+ ..
T Consensus 181 ~g~~~~~~~----~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~ 256 (741)
T 2ecf_A 181 SGRQMQLTA----DGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAA 256 (741)
T ss_dssp TTEEEECCC----CCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBT
T ss_pred CCCEEEecc----CCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCC
Confidence 765432211 00000000000 115889999999999998766410 000 00
Q ss_pred C-CCCCceeeEEEecC-CcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEEeC-----CCcEEEEecCCCc
Q 003087 190 G-NSGPCCISLWRRCH-NLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDT-----NGCLYIFEMDKDN 262 (849)
Q Consensus 190 ~-~~G~~~I~lW~~~~-~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~-----Dgtv~LWd~~~~~ 262 (849)
+ ..+...|.+|++.+ +.. ..+. ...+ |...+..++| |||++||+++. ++.|.+||+.+++
T Consensus 257 g~~~~~~~l~~~d~~~~~~~-~~~~---------~~~~--~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~ 323 (741)
T 2ecf_A 257 GDANVQVKLGVISPAEQAQT-QWID---------LGKE--QDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQ 323 (741)
T ss_dssp TSCCCEEEEEEECSSTTCCC-EEEC---------CCSC--SSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCC
T ss_pred CCCCCeeEEEEEECCCCCce-EEec---------CCCC--cceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCc
Confidence 0 01122466677665 421 1110 0012 5678899999 99999998764 6789999999874
Q ss_pred ccccccccccccccccccccCCCCCCCCCCcEEEEEecCCEE-EEEEeCCcEEEEEec
Q 003087 263 FSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNIL-ILARKSSIITMIDVL 319 (849)
Q Consensus 263 ~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~l-a~a~~dgti~lwdl~ 319 (849)
. ...+.... ......+.+++|+|||++ ++++.+|+++||.+.
T Consensus 324 ~-~~~~~~~~--------------~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~ 366 (741)
T 2ecf_A 324 Q-RVLAHETS--------------PTWVPLHNSLRFLDDGSILWSSERTGFQHLYRID 366 (741)
T ss_dssp E-EEEEEEEC--------------SSCCCCCSCCEECTTSCEEEEECTTSSCEEEEEC
T ss_pred e-EEEEEcCC--------------CCcCCcCCceEECCCCeEEEEecCCCccEEEEEc
Confidence 3 12221100 011113457899999974 466788988888876
No 132
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.80 E-value=4.1e-19 Score=209.24 Aligned_cols=233 Identities=15% Similarity=0.138 Sum_probs=153.3
Q ss_pred cceEEEEEcCCCCeEEEEe--CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeC---CCcEEEE--ec
Q 003087 11 KKQVSLFISPRGERVAVAA--VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDD---THTVYFF--KA 83 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas--~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~---dgtIrlW--d~ 83 (849)
..|++|+|||||++||+++ +++++||+..++ . ...++.++...+..++|||| ++|++++. ++..+|| +.
T Consensus 22 ~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g--~-~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~ 97 (582)
T 3o4h_A 22 VEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGG--E-TVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNT 97 (582)
T ss_dssp SCEEEEEEEETTTEEEEEEEETTEEEEEEEETT--E-EEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEET
T ss_pred cchheeecCCCCCeEEEEEccCCceeEEEEcCC--C-cEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEec
Confidence 5699999999999999986 679999997432 2 22223221246889999999 88888875 5555665 55
Q ss_pred --CCccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCC
Q 003087 84 --NGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQ 161 (849)
Q Consensus 84 --~g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 161 (849)
.|+.. .+.... .+...+|+|++... +++.+.++.+.+||+.++..... ..+ +.
T Consensus 98 ~~~g~~~-~l~~~~-----~~~~~~~s~dg~~~------~~~s~~~~~~~l~d~~~g~~~~l------------~~~-~~ 152 (582)
T 3o4h_A 98 SRPGEEQ-RLEAVK-----PMRILSGVDTGEAV------VFTGATEDRVALYALDGGGLREL------------ARL-PG 152 (582)
T ss_dssp TSTTCCE-ECTTSC-----SBEEEEEEECSSCE------EEEEECSSCEEEEEEETTEEEEE------------EEE-SS
T ss_pred cCCCccc-cccCCC-----CceeeeeCCCCCeE------EEEecCCCCceEEEccCCcEEEe------------ecC-CC
Confidence 55543 333322 12244666644321 22223445555999987654322 112 22
Q ss_pred ceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCC
Q 003087 162 NVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQG 241 (849)
Q Consensus 162 ~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG 241 (849)
.+++|||||+.||+++.++. +...|.+|++.++. ...+ .+ |...+..++|||||
T Consensus 153 --~~~~~spDG~~la~~~~~~~---------~~~~i~~~d~~~g~-~~~l------------~~--~~~~~~~~~~SpDG 206 (582)
T 3o4h_A 153 --FGFVSDIRGDLIAGLGFFGG---------GRVSLFTSNLSSGG-LRVF------------DS--GEGSFSSASISPGM 206 (582)
T ss_dssp --CEEEEEEETTEEEEEEEEET---------TEEEEEEEETTTCC-CEEE------------CC--SSCEEEEEEECTTS
T ss_pred --ceEEECCCCCEEEEEEEcCC---------CCeEEEEEcCCCCC-ceEe------------ec--CCCccccceECCCC
Confidence 89999999999998877631 11248888877642 1111 12 55678999999999
Q ss_pred CEEEEEeCCC--cEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEE--------EecCCEE-EEEEeC
Q 003087 242 KFVATSDTNG--CLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFA--------WWSDNIL-ILARKS 310 (849)
Q Consensus 242 ~~LAs~s~Dg--tv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~va--------ws~D~~l-a~a~~d 310 (849)
++||+++.+| +|.+||+.+++. .... .+...+.+++ |+|||.+ ++++.+
T Consensus 207 ~~l~~~~~~~~~~i~~~d~~~~~~--~~~~------------------~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~ 266 (582)
T 3o4h_A 207 KVTAGLETAREARLVTVDPRDGSV--EDLE------------------LPSKDFSSYRPTAITWLGYLPDGRLAVVARRE 266 (582)
T ss_dssp CEEEEEECSSCEEEEEECTTTCCE--EECC------------------CSCSHHHHHCCSEEEEEEECTTSCEEEEEEET
T ss_pred CEEEEccCCCeeEEEEEcCCCCcE--EEcc------------------CCCcChhhhhhccccceeEcCCCcEEEEEEcC
Confidence 9999989999 899999998754 2221 1112233344 9999964 567899
Q ss_pred CcEEEEEe
Q 003087 311 SIITMIDV 318 (849)
Q Consensus 311 gti~lwdl 318 (849)
|+++||++
T Consensus 267 g~~~l~~~ 274 (582)
T 3o4h_A 267 GRSAVFID 274 (582)
T ss_dssp TEEEEEET
T ss_pred CcEEEEEE
Confidence 99999999
No 133
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.80 E-value=4.1e-18 Score=184.04 Aligned_cols=255 Identities=13% Similarity=0.091 Sum_probs=156.5
Q ss_pred cceEEEEEcCCCCeEEEEeC--CeEEEEecCCCCCc--ceeeeeecCCCCEEEEEECCCCCEEEEEeC-CCcEEEEecC-
Q 003087 11 KKQVSLFISPRGERVAVAAV--NQVTILQKDDDYQE--PCGIFNCTGLGASIYGAWSESHDVLGIVDD-THTVYFFKAN- 84 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas~--~~i~iw~~~~~~~~--~~~~~~~~~~~~v~~vafSPDG~~LAs~~~-dgtIrlWd~~- 84 (849)
..+..++|||||++|++++. +.|.+|+.....+. ....+. ....+..++|||||++|++++. +++|++||+.
T Consensus 38 ~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~ 115 (343)
T 1ri6_A 38 GQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESA--LPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLED 115 (343)
T ss_dssp SCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEE--CSSCCSEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred CCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccc--cCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCC
Confidence 46788999999999998873 79999997622222 222222 2336789999999998876664 8899999993
Q ss_pred Cc---cceecccccccccccEEEEEecCCcccccccceeEEEEe-CCCcEEEEEecC-CCCcccccccccCCcceecccc
Q 003087 85 GE---EITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFT-SDGFLHQIEISQ-DPSASISSASASSSGLTLRRQF 159 (849)
Q Consensus 85 g~---~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s-~Dg~v~lw~~~~-~~~~~~~~~~~~~~~~~l~~~~ 159 (849)
|. .+..+.. ...+.+++|+|++.. +++.+ .++.|++|++.+ +....... ..+....
T Consensus 116 ~~~~~~~~~~~~-----~~~~~~~~~s~dg~~-------l~~~~~~~~~v~~~d~~~~~~~~~~~~-------~~~~~~~ 176 (343)
T 1ri6_A 116 GLPVGVVDVVEG-----LDGCHSANISPDNRT-------LWVPALKQDRICLFTVSDDGHLVAQDP-------AEVTTVE 176 (343)
T ss_dssp TEEEEEEEEECC-----CTTBCCCEECTTSSE-------EEEEEGGGTEEEEEEECTTSCEEEEEE-------EEEECST
T ss_pred CccccccccccC-----CCCceEEEECCCCCE-------EEEecCCCCEEEEEEecCCCceeeecc-------cccccCC
Confidence 32 2222211 134667888886542 44444 899999999986 43221110 0011112
Q ss_pred CCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCc-CcccceeccccceeeccCCCccccccceEEEc
Q 003087 160 PQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNL-ELEQLYTTQIEGLYCEPKGHEVQLAHPKVLIS 238 (849)
Q Consensus 160 ~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~-~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafS 238 (849)
...+.+++|+|||+.|++++..+ + .|.+|+++... .+..+... .. .+.++.....+..++||
T Consensus 177 ~~~~~~~~~~pdg~~l~~~~~~~----------~--~i~~~~~~~~~g~~~~~~~~---~~--~~~~~~~~~~~~~i~~s 239 (343)
T 1ri6_A 177 GAGPRHMVFHPNEQYAYCVNELN----------S--SVDVWELKDPHGNIECVQTL---DM--MPENFSDTRWAADIHIT 239 (343)
T ss_dssp TCCEEEEEECTTSSEEEEEETTT----------T--EEEEEESSCTTSCCEEEEEE---EC--SCTTCCSCCCEEEEEEC
T ss_pred CCCcceEEECCCCCEEEEEeCCC----------C--EEEEEEecCCCCcEEEEeec---cc--cCccccccCCccceEEC
Confidence 23588999999999887665332 1 48999986421 11111000 00 01110012356689999
Q ss_pred cCCCEEEE-EeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EEEEE-eCCcEEE
Q 003087 239 PQGKFVAT-SDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LILAR-KSSIITM 315 (849)
Q Consensus 239 PDG~~LAs-~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~a~-~dgti~l 315 (849)
|||++|+. .+.++.|++|++............ +. .. ..+..++|+|||. ++++. .+|.|.+
T Consensus 240 ~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~-----------~~----~~-~~~~~~~~s~dg~~l~~~~~~~~~v~v 303 (343)
T 1ri6_A 240 PDGRHLYACDRTASLITVFSVSEDGSVLSKEGF-----------QP----TE-TQPRGFNVDHSGKYLIAAGQKSHHISV 303 (343)
T ss_dssp TTSSEEEEEETTTTEEEEEEECTTSCCEEEEEE-----------EE----CS-SSCCCEEECTTSSEEEEECTTTCEEEE
T ss_pred CCCCEEEEEecCCCEEEEEEEcCCCCceEEeee-----------ec----CC-CccceEEECCCCCEEEEecCCCCeEEE
Confidence 99998874 457999999999831111111110 00 01 2267899999986 55665 5799999
Q ss_pred EEec
Q 003087 316 IDVL 319 (849)
Q Consensus 316 wdl~ 319 (849)
|++.
T Consensus 304 ~~~d 307 (343)
T 1ri6_A 304 YEIV 307 (343)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 9765
No 134
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.80 E-value=1.4e-19 Score=218.10 Aligned_cols=228 Identities=7% Similarity=-0.040 Sum_probs=142.3
Q ss_pred cceEEEEEcCCCCeEEEEeCCeEEEEecCCCCCcceeeeeecCCC---CEEEEEECCCCCEEEEEeCC---------CcE
Q 003087 11 KKQVSLFISPRGERVAVAAVNQVTILQKDDDYQEPCGIFNCTGLG---ASIYGAWSESHDVLGIVDDT---------HTV 78 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas~~~i~iw~~~~~~~~~~~~~~~~~~~---~v~~vafSPDG~~LAs~~~d---------gtI 78 (849)
..+.+++|||||++++++.+++|++|+..++ .....+.. +.. .|.+++|||||++||+++.+ ++|
T Consensus 17 ~~~~~~~~spdg~~~~~~~dg~i~~~d~~~g--~~~~~~~~-~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i 93 (723)
T 1xfd_A 17 IHDPEAKWISDTEFIYREQKGTVRLWNVETN--TSTVLIEG-KKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYY 93 (723)
T ss_dssp CCCCCCCBSSSSCBCCCCSSSCEEEBCGGGC--CCEEEECT-TTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEE
T ss_pred ccccccEEcCCCcEEEEeCCCCEEEEECCCC--cEEEEecc-ccccccccceEEECCCCCEEEEEecCccceeecceeeE
Confidence 4578999999999998866789999997653 22222221 111 48899999999999999875 788
Q ss_pred EEEecCCccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCc--ceec
Q 003087 79 YFFKANGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSG--LTLR 156 (849)
Q Consensus 79 rlWd~~g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~--~~l~ 156 (849)
++||+.+.....+.... .....+..++||||+... +. ..++.|.+|++.++....... ... ..+.
T Consensus 94 ~~~d~~~~~~~~l~~~~-~~~~~~~~~~~SPdG~~l-------a~-~~~~~i~~~~~~~g~~~~~~~----~~~~~~~~~ 160 (723)
T 1xfd_A 94 VLSKIPHGDPQSLDPPE-VSNAKLQYAGWGPKGQQL-------IF-IFENNIYYCAHVGKQAIRVVS----TGKEGVIYN 160 (723)
T ss_dssp EEEESSSCCCEECCCTT-CCSCCCSBCCBCSSTTCE-------EE-EETTEEEEESSSSSCCEEEEC----CCBTTTEEE
T ss_pred EEEECCCCceEeccCCc-cccccccccEECCCCCEE-------EE-EECCeEEEEECCCCceEEEec----CCCCCceEC
Confidence 89999865544444321 112346778899977543 23 334899999988765433211 000 0000
Q ss_pred cccC---------CceEEEEEcCCCceEEEEecCC-CCccccC----------------CCCC----CceeeEEEecCCc
Q 003087 157 RQFP---------QNVICTDYHPELSLLSVVSNTD-TSSLTSS----------------GNSG----PCCISLWRRCHNL 206 (849)
Q Consensus 157 ~~~~---------~~V~svafsPdg~lLas~g~d~-t~~~~~~----------------~~~G----~~~I~lW~~~~~~ 206 (849)
+++ ..+.+++|||||+.||+++.++ .+++|.. ...| ...|.+|++.++.
T Consensus 161 -g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~ 239 (723)
T 1xfd_A 161 -GLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPT 239 (723)
T ss_dssp -EECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSC
T ss_pred -cccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCc
Confidence 000 1248999999999999987653 1222211 0111 1257888877653
Q ss_pred CcccceeccccceeeccCCCccccccceEEEccCCCEEEEEeC----CCcEEEEecCCCcc
Q 003087 207 ELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDT----NGCLYIFEMDKDNF 263 (849)
Q Consensus 207 ~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~----Dgtv~LWd~~~~~~ 263 (849)
....+... . .+.+ |...+..++|||||++||+.+. ++.|.+||+.++++
T Consensus 240 ~~~~l~~~---~---~~~~--~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~ 292 (723)
T 1xfd_A 240 HDLEMMPP---D---DPRM--REYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVC 292 (723)
T ss_dssp CCEECCCC---C---CGGG--SSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCE
T ss_pred eeEEeeCC---c---cCCC--ccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcc
Confidence 11111100 0 0011 3457889999999999987753 36899999988743
No 135
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.79 E-value=9.2e-18 Score=197.08 Aligned_cols=251 Identities=8% Similarity=-0.007 Sum_probs=165.9
Q ss_pred eEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECC----CCCEEEEEeC-CCcEEEEecC-C
Q 003087 13 QVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSE----SHDVLGIVDD-THTVYFFKAN-G 85 (849)
Q Consensus 13 v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSP----DG~~LAs~~~-dgtIrlWd~~-g 85 (849)
+..++|||||++|++++ +++|.+||...........+. .....+.++||| ||++|++++. +++|+|||.. +
T Consensus 181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~--~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~ 258 (543)
T 1nir_A 181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK--IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETL 258 (543)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE--CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTC
T ss_pred cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe--cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecccc
Confidence 78999999999999997 689999998311233333333 345678999999 9999999984 8999999986 5
Q ss_pred ccceecccccc-------cccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccc
Q 003087 86 EEITRFTNKHL-------KVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQ 158 (849)
Q Consensus 86 ~~~~~l~~~~~-------~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~ 158 (849)
+.+.++..+.. .....+.+++|++++.. .++....+|+|.+||+.+++..... ++.
T Consensus 259 ~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~------~~vs~~~~g~i~vvd~~~~~~l~~~---------~i~-- 321 (543)
T 1nir_A 259 EPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPE------FIVNVKETGKVLLVNYKDIDNLTVT---------SIG-- 321 (543)
T ss_dssp CEEEEEECCEECSSSCCEESCCCEEEEEECSSSSE------EEEEETTTTEEEEEECTTSSSCEEE---------EEE--
T ss_pred ccceeecccCcccCccccccCCceEEEEECCCCCE------EEEEECCCCeEEEEEecCCCcceeE---------Eec--
Confidence 55555543210 01135788999885431 1445578999999999875543210 111
Q ss_pred cCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEc
Q 003087 159 FPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLIS 238 (849)
Q Consensus 159 ~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafS 238 (849)
+...+..++|+|||+++++++..+ + +|++||..++.-...+-. + ... |......+ ++
T Consensus 322 ~~~~~~~~~~spdg~~l~va~~~~----------~--~v~v~D~~tg~l~~~i~~----g----~~p--h~g~g~~~-~~ 378 (543)
T 1nir_A 322 AAPFLHDGGWDSSHRYFMTAANNS----------N--KVAVIDSKDRRLSALVDV----G----KTP--HPGRGANF-VH 378 (543)
T ss_dssp CCSSCCCEEECTTSCEEEEEEGGG----------T--EEEEEETTTTEEEEEEEC----S----SSB--CCTTCEEE-EE
T ss_pred cCcCccCceECCCCCEEEEEecCC----------C--eEEEEECCCCeEEEeecc----C----CCC--CCCCCccc-CC
Confidence 123578899999999877766532 1 489999876521111100 0 001 33322233 47
Q ss_pred cC-CCEEEEEe-CCCcEEEEecCC-------CcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EEEEE
Q 003087 239 PQ-GKFVATSD-TNGCLYIFEMDK-------DNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LILAR 308 (849)
Q Consensus 239 PD-G~~LAs~s-~Dgtv~LWd~~~-------~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~a~ 308 (849)
|+ |..+||++ .|++|++||+++ .++ ++++. .+..++..|+|+||++ |.+++
T Consensus 379 p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~-v~~l~------------------~~g~~~~~v~~~pdg~~l~v~~ 439 (543)
T 1nir_A 379 PKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKK-VAELQ------------------GQGGGSLFIKTHPKSSHLYVDT 439 (543)
T ss_dssp TTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSE-EEEEE------------------CSCSCCCCEECCTTCCEEEECC
T ss_pred CCCccEEEeccCCCceEEEEEeCCCCCchhcCeE-EEEEE------------------cCCCCceEEEcCCCCCcEEEec
Confidence 87 77788876 589999999987 222 22222 1224567799999997 45554
Q ss_pred -------eCCcEEEEEecCCccc
Q 003087 309 -------KSSIITMIDVLSGLKV 324 (849)
Q Consensus 309 -------~dgti~lwdl~~~~~l 324 (849)
.+++|.|||+.+++..
T Consensus 440 ~~~~~~~~~~~v~v~d~~~~~~~ 462 (543)
T 1nir_A 440 TFNPDARISQSVAVFDLKNLDAK 462 (543)
T ss_dssp TTCSSHHHHTCEEEEETTCTTSC
T ss_pred CCCCCcccCceEEEEECCCCCCC
Confidence 2789999999998755
No 136
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.79 E-value=3.3e-18 Score=206.06 Aligned_cols=259 Identities=10% Similarity=0.045 Sum_probs=152.2
Q ss_pred ceEEEEEcCCCCeEEEEeC----------CeEEEEecCCCCCcceeeeee-cC-CCCEEEEEECCCCCEEEEEeCCCcEE
Q 003087 12 KQVSLFISPRGERVAVAAV----------NQVTILQKDDDYQEPCGIFNC-TG-LGASIYGAWSESHDVLGIVDDTHTVY 79 (849)
Q Consensus 12 ~v~slafSPdG~~LAsas~----------~~i~iw~~~~~~~~~~~~~~~-~~-~~~v~~vafSPDG~~LAs~~~dgtIr 79 (849)
.|.+++|||||++||++++ ++|.+|+..++. . ..+.. .+ ...+..++|||||+.||+++. ++|+
T Consensus 62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~--~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~ 137 (723)
T 1xfd_A 62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGD--P-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIY 137 (723)
T ss_dssp TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCC--C-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEE
T ss_pred ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCc--e-EeccCCccccccccccEECCCCCEEEEEEC-CeEE
Confidence 4899999999999999974 578899976532 1 11221 11 234788999999999999987 7999
Q ss_pred EEecCCccceeccccc-ccc--------------cccEEEEEecCCccccccc--ce-eEEEE-----------------
Q 003087 80 FFKANGEEITRFTNKH-LKV--------------SLPIIGLIAQDETDVQRSC--LC-SFTVF----------------- 124 (849)
Q Consensus 80 lWd~~g~~~~~l~~~~-~~~--------------~~~V~~l~fs~~~~~~~s~--~~-~~~~~----------------- 124 (849)
+||+.+.....+...+ ..+ ...+.+++|+||+...+.. +. .+.++
T Consensus 138 ~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (723)
T 1xfd_A 138 YCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYH 217 (723)
T ss_dssp EESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEE
T ss_pred EEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceecc
Confidence 9999865444444322 111 0123689999976532211 00 00000
Q ss_pred -e------CCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCcee
Q 003087 125 -T------SDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCI 197 (849)
Q Consensus 125 -s------~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I 197 (849)
. .+.+|++||+.++.....+. . ...+. .+...|.+++|||||++|++.+..+. +...|
T Consensus 218 ~~~~G~~~~~~~l~~~d~~~~~~~~~l~----~-~~~~~-~~~~~~~~~~~SpDg~~l~~~~~~~~---------~~~~i 282 (723)
T 1xfd_A 218 YPKAGSENPSISLHVIGLNGPTHDLEMM----P-PDDPR-MREYYITMVKWATSTKVAVTWLNRAQ---------NVSIL 282 (723)
T ss_dssp CCBTTSCCCEEEEEEEESSSSCCCEECC----C-CCCGG-GSSEEEEEEEESSSSEEEEEEEETTS---------CEEEE
T ss_pred CCCCCCCCCeeEEEEEECCCCceeEEee----C-CccCC-CccceeEEEEEeCCCeEEEEEEcCCC---------CeEEE
Confidence 0 02278899987765322111 0 00011 12346899999999999977654421 11358
Q ss_pred eEEEecCCcCcccceeccccceeeccCCCcccccc----ceEEEccCCCEEEEE--eCCC------cEEEEe-cCCCcc-
Q 003087 198 SLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAH----PKVLISPQGKFVATS--DTNG------CLYIFE-MDKDNF- 263 (849)
Q Consensus 198 ~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V----~~vafSPDG~~LAs~--s~Dg------tv~LWd-~~~~~~- 263 (849)
.+|++.++.. ..+.. . + |...+ ..++|||||+.||.+ +.+| .|.+|| ..++..
T Consensus 283 ~~~d~~~g~~-~~~~~--------~--~--~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~ 349 (723)
T 1xfd_A 283 TLCDATTGVC-TKKHE--------D--E--SEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSND 349 (723)
T ss_dssp EEEETTTCCE-EEEEE--------E--E--CSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSC
T ss_pred EEEeCCCCcc-eEEEE--------e--c--cCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCcc
Confidence 8999876521 11111 0 0 22233 378999999988864 5677 455566 333320
Q ss_pred cccccccccccccccccccCCCCCCCCCCcEE-EEEecCCE-EEEEEeC---CcEEEEEecC
Q 003087 264 SLSKFACGERFDLQVADSLFDGRTKPISDITD-FAWWSDNI-LILARKS---SIITMIDVLS 320 (849)
Q Consensus 264 ~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~-vaws~D~~-la~a~~d---gti~lwdl~~ 320 (849)
....+ ++ ....+.. ++|+|||+ |+.++.+ ++++||++..
T Consensus 350 ~~~~l--------------~~----~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~ 393 (723)
T 1xfd_A 350 NIQSI--------------TS----GDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANT 393 (723)
T ss_dssp CCCBS--------------CC----SSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECS
T ss_pred ceeEe--------------ec----CCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeC
Confidence 01121 11 1123444 68999986 5445444 7899999974
No 137
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.78 E-value=4.1e-18 Score=206.02 Aligned_cols=252 Identities=10% Similarity=0.059 Sum_probs=160.6
Q ss_pred ceEEEEEcCCCCeEEEEeCCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCCccceec
Q 003087 12 KQVSLFISPRGERVAVAAVNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANGEEITRF 91 (849)
Q Consensus 12 ~v~slafSPdG~~LAsas~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~~~~~l 91 (849)
.|.+++|||||++||++++++|.+|+..++.......+.. +...+..++|||||++||+++. ++|++||+.+.....+
T Consensus 110 ~v~~~~~SpDg~~l~~~~~~~i~~~d~~~~~~~~~~~l~~-~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~~~ 187 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLGGELYLYDLKQEGKAAVRQLTH-GEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQMQL 187 (741)
T ss_dssp ESCCCEECTTSSEEEEEETTEEEEEESSSCSTTSCCBCCC-SSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEEEEC
T ss_pred CcceeEECCCCCEEEEEeCCcEEEEECCCCCcceEEEccc-CCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCEEEe
Confidence 3789999999999999999999999976531001112221 2457899999999999999985 6999999986554554
Q ss_pred cccccc-cc------------ccEEEEEecCCcccccccceeEEEEeCCC------------------------------
Q 003087 92 TNKHLK-VS------------LPIIGLIAQDETDVQRSCLCSFTVFTSDG------------------------------ 128 (849)
Q Consensus 92 ~~~~~~-~~------------~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg------------------------------ 128 (849)
...+.. +. ..+.+++|+||+.. ++..+.|+
T Consensus 188 ~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~-------l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~ 260 (741)
T 2ecf_A 188 TADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSA-------IAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDAN 260 (741)
T ss_dssp CCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSC-------EEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCC
T ss_pred ccCCccceeccccceeeeeccccccceEECCCCCE-------EEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCC
Confidence 432211 00 01366889987653 33333333
Q ss_pred ---cEEEEEecC-CCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecC
Q 003087 129 ---FLHQIEISQ-DPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCH 204 (849)
Q Consensus 129 ---~v~lw~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~ 204 (849)
.|.+||+.+ +....... ...+...|.+++| |||+.|++++.+... ....|.+|++.+
T Consensus 261 ~~~~l~~~d~~~~~~~~~~~~----------~~~~~~~~~~~~~-pDg~~l~~~~~~~~~--------~~~~i~~~d~~~ 321 (741)
T 2ecf_A 261 VQVKLGVISPAEQAQTQWIDL----------GKEQDIYLARVNW-RDPQHLSFQRQSRDQ--------KKLDLVEVTLAS 321 (741)
T ss_dssp CEEEEEEECSSTTCCCEEECC----------CSCSSEEEEEEEE-EETTEEEEEEEETTS--------SEEEEEEEETTT
T ss_pred CeeEEEEEECCCCCceEEecC----------CCCcceEEEEEEe-CCCCEEEEEEecccC--------CeEEEEEEECCC
Confidence 677788776 55422210 1123446999999 999999887654210 112488898876
Q ss_pred CcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCC
Q 003087 205 NLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFD 284 (849)
Q Consensus 205 ~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~ 284 (849)
+.. ..+.... ..+ ....+..++|||||+++++++.||+++||.++.... ...++
T Consensus 322 g~~-~~~~~~~-------~~~--~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~--------------- 375 (741)
T 2ecf_A 322 NQQ-RVLAHET-------SPT--WVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALT--------------- 375 (741)
T ss_dssp CCE-EEEEEEE-------CSS--CCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESC---------------
T ss_pred Cce-EEEEEcC-------CCC--cCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeee---------------
Confidence 521 1111100 001 111456899999999999999999999998763211 12221
Q ss_pred CCCCCCCCcEEE-EEecCCE-EE-EEEeCC--cEEEEEecC
Q 003087 285 GRTKPISDITDF-AWWSDNI-LI-LARKSS--IITMIDVLS 320 (849)
Q Consensus 285 ~~~~~~~~v~~v-aws~D~~-la-~a~~dg--ti~lwdl~~ 320 (849)
.+...+.++ +|+|||. ++ +++.++ +++||++..
T Consensus 376 ---~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 376 ---HGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL 413 (741)
T ss_dssp ---CSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred ---ecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence 123456777 5999985 54 445555 899999974
No 138
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.77 E-value=2.2e-17 Score=198.63 Aligned_cols=253 Identities=11% Similarity=0.110 Sum_probs=160.7
Q ss_pred cceEEEEEcCCCCeEEEEeCCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCC-----
Q 003087 11 KKQVSLFISPRGERVAVAAVNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANG----- 85 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g----- 85 (849)
..|.+++|||| ++++.+.+++|.+|+..++ ... ... .+...+.+++|||||+.||++ .|++|++|++.+
T Consensus 82 ~~v~~~~~spd-~~~~~~~~~~i~~~d~~~~--~~~-~l~-~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~ 155 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLFTQGGLVGFDMLAR--KVT-YLF-DTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGM 155 (706)
T ss_dssp CCCEEEEETTT-TEEEEEETTEEEEEETTTT--EEE-EEE-CCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCC
T ss_pred cCceeEEECCC-CeEEEEECCEEEEEECCCC--ceE-Ecc-CCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccC
Confidence 46999999999 7777778899999997643 221 122 124557789999999999996 679999999976
Q ss_pred ccceeccccccc-c----------cccEEEEEecCCcccccccceeEEEEe-----------------------------
Q 003087 86 EEITRFTNKHLK-V----------SLPIIGLIAQDETDVQRSCLCSFTVFT----------------------------- 125 (849)
Q Consensus 86 ~~~~~l~~~~~~-~----------~~~V~~l~fs~~~~~~~s~~~~~~~~s----------------------------- 125 (849)
.....+...... + ...+.++.|+||+.. ++.++
T Consensus 156 g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~-------la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~ 228 (706)
T 2z3z_A 156 SRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSC-------LAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMA 228 (706)
T ss_dssp CCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSE-------EEEEEEECTTSCCEEEEECCSSSCEEEEECCCBT
T ss_pred CCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCE-------EEEEEECCCCCceEEeeccCCCCCceEEeeCCCC
Confidence 544444332211 0 011467889987653 22223
Q ss_pred ----CCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEE
Q 003087 126 ----SDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWR 201 (849)
Q Consensus 126 ----~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~ 201 (849)
.++.|.+||+.++....... ...+...|.+++|||||+.|++++.++.. ....|.+|+
T Consensus 229 g~~~~~~~l~~~d~~~~~~~~~~~----------~~~~~~~~~~~~~spdg~~l~~~~~~~~~--------~~~~v~~~d 290 (706)
T 2z3z_A 229 GTPSHHVTVGIYHLATGKTVYLQT----------GEPKEKFLTNLSWSPDENILYVAEVNRAQ--------NECKVNAYD 290 (706)
T ss_dssp TSCCCEEEEEEEETTTTEEEECCC----------CSCTTCEEEEEEECTTSSEEEEEEECTTS--------CEEEEEEEE
T ss_pred CCCCCeeEEEEEECCCCceEeecc----------CCCCceeEeeEEEECCCCEEEEEEeCCCC--------CeeEEEEEE
Confidence 44679999987765422211 11234469999999999999887766410 123588899
Q ss_pred ecCCcCcccceeccccceeeccCCCccccccceEEEcc--CCCEEEEEeCCCcEEEEecC-CCccccccccccccccccc
Q 003087 202 RCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISP--QGKFVATSDTNGCLYIFEMD-KDNFSLSKFACGERFDLQV 278 (849)
Q Consensus 202 ~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSP--DG~~LAs~s~Dgtv~LWd~~-~~~~~l~~~~~~~~~~~~~ 278 (849)
+.++.....+... ...+ ....+..++||| ||++|++++.||+++||.++ +++. +..++
T Consensus 291 ~~~g~~~~~~~~~-------~~~~--~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~-~~~l~--------- 351 (706)
T 2z3z_A 291 AETGRFVRTLFVE-------TDKH--YVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRL-IRQVT--------- 351 (706)
T ss_dssp TTTCCEEEEEEEE-------ECSS--CCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCE-EEECC---------
T ss_pred CCCCceeeEEEEc-------cCCC--eECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCE-EEecC---------
Confidence 8765212222110 0011 112346899999 99999999999999999886 2221 22222
Q ss_pred ccccCCCCCCCCCCcEE-EEEecCCE-EEEEE-eCC----cEEEEEecCCc
Q 003087 279 ADSLFDGRTKPISDITD-FAWWSDNI-LILAR-KSS----IITMIDVLSGL 322 (849)
Q Consensus 279 ~~~l~~~~~~~~~~v~~-vaws~D~~-la~a~-~dg----ti~lwdl~~~~ 322 (849)
.+...+.+ ++|+|||. |+.++ .++ .|..||+.+++
T Consensus 352 ---------~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~ 393 (706)
T 2z3z_A 352 ---------KGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK 393 (706)
T ss_dssp ---------CSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC
T ss_pred ---------CCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC
Confidence 12244666 79999985 55444 444 55566666654
No 139
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.76 E-value=2.2e-17 Score=198.69 Aligned_cols=246 Identities=12% Similarity=0.128 Sum_probs=156.4
Q ss_pred cceEEEEEcCCCCeEEEEeCCeEEEEecCC-----CCCcceeeeeecCCCC--------------EEEEEECCCCCEEEE
Q 003087 11 KKQVSLFISPRGERVAVAAVNQVTILQKDD-----DYQEPCGIFNCTGLGA--------------SIYGAWSESHDVLGI 71 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas~~~i~iw~~~~-----~~~~~~~~~~~~~~~~--------------v~~vafSPDG~~LAs 71 (849)
+.+.+++|||||++||++.+++|.+|+..+ + .... .+..+... +.+++|||||++||+
T Consensus 121 ~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g--~~~~-~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~ 197 (706)
T 2z3z_A 121 EETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMS--RAIA-VTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAF 197 (706)
T ss_dssp TCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCC--CCEE-SCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEE
T ss_pred ccccCCcCCCCCCEEEEEECCeEEEEecCcccccCC--CcEE-eccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEE
Confidence 457789999999999998899999999764 3 1211 11111222 478999999999999
Q ss_pred Ee---------------------------------CCCcEEEEecCCccceecccccccccccEEEEEecCCcccccccc
Q 003087 72 VD---------------------------------DTHTVYFFKANGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCL 118 (849)
Q Consensus 72 ~~---------------------------------~dgtIrlWd~~g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~ 118 (849)
++ .+++|++||+.+.....+.... .....+.+++|+||+..
T Consensus 198 ~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~----- 271 (706)
T 2z3z_A 198 YRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGE-PKEKFLTNLSWSPDENI----- 271 (706)
T ss_dssp EEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCS-CTTCEEEEEEECTTSSE-----
T ss_pred EEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCC-CCceeEeeEEEECCCCE-----
Confidence 97 4578999999865544433211 12245889999997653
Q ss_pred eeEEEEeCCC-----cEEEEEecCC-CCcccccccccCCcceeccccCCceEEEEEcC--CCceEEEEecCCCCccccCC
Q 003087 119 CSFTVFTSDG-----FLHQIEISQD-PSASISSASASSSGLTLRRQFPQNVICTDYHP--ELSLLSVVSNTDTSSLTSSG 190 (849)
Q Consensus 119 ~~~~~~s~Dg-----~v~lw~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~V~svafsP--dg~lLas~g~d~t~~~~~~~ 190 (849)
+++.+.|+ .|.+||+.++ ....... .-.......+.+++||| ||+++++++.+++
T Consensus 272 --l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~--------~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~------- 334 (706)
T 2z3z_A 272 --LYVAEVNRAQNECKVNAYDAETGRFVRTLFV--------ETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGW------- 334 (706)
T ss_dssp --EEEEEECTTSCEEEEEEEETTTCCEEEEEEE--------EECSSCCCCCSCCEECTTCSSEEEEEECTTSS-------
T ss_pred --EEEEEeCCCCCeeEEEEEECCCCceeeEEEE--------ccCCCeECccCCceeecCCCCEEEEEEccCCc-------
Confidence 33334443 8999999876 3221111 00001111257889999 9999888766652
Q ss_pred CCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccce-EEEccCCCEEEEEeCC-C----cEEEEecCCCccc
Q 003087 191 NSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPK-VLISPQGKFVATSDTN-G----CLYIFEMDKDNFS 264 (849)
Q Consensus 191 ~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~-vafSPDG~~LAs~s~D-g----tv~LWd~~~~~~~ 264 (849)
+++|.++... ..+. ...+ |...+.. ++|||||+.|+.++.+ + .|..|++.++.
T Consensus 335 ------~~l~~~~~~~--~~~~---------~l~~--~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-- 393 (706)
T 2z3z_A 335 ------NHLYLYDTTG--RLIR---------QVTK--GEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-- 393 (706)
T ss_dssp ------CEEEEEETTS--CEEE---------ECCC--SSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC--
T ss_pred ------cEEEEEECCC--CEEE---------ecCC--CCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC--
Confidence 6788876211 1110 1112 3445666 7999999988766654 3 45555665542
Q ss_pred ccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EEEEEeC----CcEEEEEecCCc
Q 003087 265 LSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LILARKS----SIITMIDVLSGL 322 (849)
Q Consensus 265 l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~a~~d----gti~lwdl~~~~ 322 (849)
+..+. +...+.+++|+|||. ++.+..+ +.|.+||+.+++
T Consensus 394 ~~~l~-------------------~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 394 TKDLT-------------------PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp CEESC-------------------CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred ceecc-------------------CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 12221 124578999999986 5544333 469999998876
No 140
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.76 E-value=3.2e-17 Score=178.29 Aligned_cols=247 Identities=13% Similarity=0.050 Sum_probs=163.7
Q ss_pred cceEEEEEcCCCCeEEEEe--------CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEE-EEeCCCcEEEE
Q 003087 11 KKQVSLFISPRGERVAVAA--------VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLG-IVDDTHTVYFF 81 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas--------~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LA-s~~~dgtIrlW 81 (849)
..+..++|||||++|++++ +++|.+|+..+. +....+.. ......++|||||++|+ ++..+++|++|
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~--~~~~~~~~--~~~~~~~~~s~dg~~l~v~~~~~~~v~~~ 116 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTL--EVTQAIHN--DLKPFGATINNTTQTLWFGNTVNSAVTAI 116 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTC--CEEEEEEE--SSCCCSEEEETTTTEEEEEETTTTEEEEE
T ss_pred cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCC--eEEEEEec--CCCcceEEECCCCCEEEEEecCCCEEEEE
Confidence 4678999999999998887 457999987643 33333332 23456899999999655 55668999999
Q ss_pred ecC-Cccceecccccccc-----cccEEEEEecCCcccccccceeEEEE--eCCCcEEEEEecCCCCcccccccccCCcc
Q 003087 82 KAN-GEEITRFTNKHLKV-----SLPIIGLIAQDETDVQRSCLCSFTVF--TSDGFLHQIEISQDPSASISSASASSSGL 153 (849)
Q Consensus 82 d~~-g~~~~~l~~~~~~~-----~~~V~~l~fs~~~~~~~s~~~~~~~~--s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~ 153 (849)
|.. |+.+..+..+.... ...+.+++|+|++.. +++. +.++.|.+||..+++....
T Consensus 117 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~-------l~~~~~~~~~~i~~~d~~~~~~~~~---------- 179 (353)
T 3vgz_A 117 DAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNT-------VYISGIGKESVIWVVDGGNIKLKTA---------- 179 (353)
T ss_dssp ETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTE-------EEEEEESSSCEEEEEETTTTEEEEE----------
T ss_pred eCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCE-------EEEEecCCCceEEEEcCCCCceEEE----------
Confidence 996 55545544322110 012678999886542 2333 3588999999876654322
Q ss_pred eeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccc
Q 003087 154 TLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHP 233 (849)
Q Consensus 154 ~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~ 233 (849)
+. .....+.+++|+|||+.|++++.++ .|.+|+..++.....+.. ...+ +...+.
T Consensus 180 -~~-~~~~~~~~~~~s~dg~~l~~~~~~~-------------~i~~~d~~~~~~~~~~~~--------~~~~--~~~~~~ 234 (353)
T 3vgz_A 180 -IQ-NTGKMSTGLALDSEGKRLYTTNADG-------------ELITIDTADNKILSRKKL--------LDDG--KEHFFI 234 (353)
T ss_dssp -EC-CCCTTCCCCEEETTTTEEEEECTTS-------------EEEEEETTTTEEEEEEEC--------CCSS--SCCCEE
T ss_pred -ec-CCCCccceEEECCCCCEEEEEcCCC-------------eEEEEECCCCeEEEEEEc--------CCCC--CCcccc
Confidence 11 1123478899999999998887664 378898766421111100 0112 334667
Q ss_pred eEEEccCCCEEEEEeCC-CcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EEEEE-eC
Q 003087 234 KVLISPQGKFVATSDTN-GCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LILAR-KS 310 (849)
Q Consensus 234 ~vafSPDG~~LAs~s~D-gtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~a~-~d 310 (849)
.++|||||++|+.++.+ +.|.+||+.+++. +..+.. .....++|+|||. +.++. .+
T Consensus 235 ~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~-~~~~~~--------------------~~~~~~~~s~dg~~l~v~~~~~ 293 (353)
T 3vgz_A 235 NISLDTARQRAFITDSKAAEVLVVDTRNGNI-LAKVAA--------------------PESLAVLFNPARNEAYVTHRQA 293 (353)
T ss_dssp EEEEETTTTEEEEEESSSSEEEEEETTTCCE-EEEEEC--------------------SSCCCEEEETTTTEEEEEETTT
T ss_pred eEEECCCCCEEEEEeCCCCEEEEEECCCCcE-EEEEEc--------------------CCCceEEECCCCCEEEEEECCC
Confidence 89999999988777654 9999999987743 333321 0124589999986 55554 68
Q ss_pred CcEEEEEecCCccc
Q 003087 311 SIITMIDVLSGLKV 324 (849)
Q Consensus 311 gti~lwdl~~~~~l 324 (849)
++|.+||+.+++.+
T Consensus 294 ~~v~~~d~~~~~~~ 307 (353)
T 3vgz_A 294 GKVSVIDAKSYKVV 307 (353)
T ss_dssp TEEEEEETTTTEEE
T ss_pred CeEEEEECCCCeEE
Confidence 99999999988743
No 141
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.76 E-value=2e-16 Score=171.14 Aligned_cols=253 Identities=11% Similarity=0.099 Sum_probs=156.2
Q ss_pred cceEEEEEcCCCCeEEEEe--CCeEEEEecCCCCCcc-eeeeeecCCCCEEE-EEECCCCCEEEEEeCCC---cEEEEec
Q 003087 11 KKQVSLFISPRGERVAVAA--VNQVTILQKDDDYQEP-CGIFNCTGLGASIY-GAWSESHDVLGIVDDTH---TVYFFKA 83 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas--~~~i~iw~~~~~~~~~-~~~~~~~~~~~v~~-vafSPDG~~LAs~~~dg---tIrlWd~ 83 (849)
..+ .++|||||++|++++ +++|.+|+..++ .. ...... ...... ++|||||++|+++..++ +|++||+
T Consensus 41 ~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~--~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~ 115 (331)
T 3u4y_A 41 DFV-DTAITSDCSNVVVTSDFCQTLVQIETQLE--PPKVVAIQE--GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSF 115 (331)
T ss_dssp CEE-EEEECSSSCEEEEEESTTCEEEEEECSSS--SCEEEEEEE--CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEET
T ss_pred Ccc-eEEEcCCCCEEEEEeCCCCeEEEEECCCC--ceeEEeccc--CCCCccceEECCCCCEEEEecCCCCcccEEEEEC
Confidence 345 999999999887765 568999997653 22 222222 233344 99999999999655553 8999999
Q ss_pred C-CccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCc-EEEEEecCCCCcccccccccCCcceeccccCC
Q 003087 84 N-GEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGF-LHQIEISQDPSASISSASASSSGLTLRRQFPQ 161 (849)
Q Consensus 84 ~-g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~-v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 161 (849)
. ++.+..+..+ ....+++|+|++... +++...++. |.+|++..++...... ...+. ...
T Consensus 116 ~~~~~~~~~~~~-----~~~~~~~~spdg~~l------~~~~~~~~~~i~~~~~~~~g~~~~~~------~~~~~--~~~ 176 (331)
T 3u4y_A 116 LKNKFISTIPIP-----YDAVGIAISPNGNGL------ILIDRSSANTVRRFKIDADGVLFDTG------QEFIS--GGT 176 (331)
T ss_dssp TTTEEEEEEECC-----TTEEEEEECTTSSCE------EEEEETTTTEEEEEEECTTCCEEEEE------EEEEC--SSS
T ss_pred CCCCeEEEEECC-----CCccceEECCCCCEE------EEEecCCCceEEEEEECCCCcEeecC------Ccccc--CCC
Confidence 7 4444443221 345789999876421 222345678 9999997644321100 01111 123
Q ss_pred ceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCC
Q 003087 162 NVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQG 241 (849)
Q Consensus 162 ~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG 241 (849)
.+.+++|||||+.|++++..+ + .|.+|++.++.....+.. +. +...+..++|||||
T Consensus 177 ~~~~~~~spdg~~l~v~~~~~----------~--~v~v~d~~~~~~~~~~~~------~~------~~~~~~~~~~spdg 232 (331)
T 3u4y_A 177 RPFNITFTPDGNFAFVANLIG----------N--SIGILETQNPENITLLNA------VG------TNNLPGTIVVSRDG 232 (331)
T ss_dssp SEEEEEECTTSSEEEEEETTT----------T--EEEEEECSSTTSCEEEEE------EE------CSSCCCCEEECTTS
T ss_pred CccceEECCCCCEEEEEeCCC----------C--eEEEEECCCCcccceeee------cc------CCCCCceEEECCCC
Confidence 589999999999776665443 1 489999876432111111 11 12466789999999
Q ss_pred CEEEEEe-CCCcEEEEecCCCccc-ccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EEEEE-eCCcEEEEE
Q 003087 242 KFVATSD-TNGCLYIFEMDKDNFS-LSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LILAR-KSSIITMID 317 (849)
Q Consensus 242 ~~LAs~s-~Dgtv~LWd~~~~~~~-l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~a~-~dgti~lwd 317 (849)
++|+.++ .++.|.+||+.+++.. +..+... +... ......+..++|+|||+ +++++ .+|+|.|||
T Consensus 233 ~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~----------~~~~-~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d 301 (331)
T 3u4y_A 233 STVYVLTESTVDVFNFNQLSGTLSFVKSFGHG----------LLID-PRPLFGANQMALNKTETKLFISANISRELKVFT 301 (331)
T ss_dssp SEEEEECSSEEEEEEEETTTTEEEEEEEEECC----------CCCC-CGGGTTCCCEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CEEEEEEcCCCEEEEEECCCCceeeecccccc----------cccC-CCCcccccceEECCCCCEEEEecCCCCcEEEEE
Confidence 9876665 5889999999876321 0111100 0000 00111224589999986 54554 567999999
Q ss_pred ecCCc
Q 003087 318 VLSGL 322 (849)
Q Consensus 318 l~~~~ 322 (849)
+.+..
T Consensus 302 ~~~~~ 306 (331)
T 3u4y_A 302 ISGKV 306 (331)
T ss_dssp TTSCE
T ss_pred ecCCc
Confidence 98765
No 142
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.75 E-value=2.7e-18 Score=207.14 Aligned_cols=265 Identities=11% Similarity=0.001 Sum_probs=158.2
Q ss_pred EEEEEcCCCCeEEEEeCCeEEEEecCCCCCcceeeeeecC--CCCEEEEEECCCCCEEEEEeC---------CCcEEEEe
Q 003087 14 VSLFISPRGERVAVAAVNQVTILQKDDDYQEPCGIFNCTG--LGASIYGAWSESHDVLGIVDD---------THTVYFFK 82 (849)
Q Consensus 14 ~slafSPdG~~LAsas~~~i~iw~~~~~~~~~~~~~~~~~--~~~v~~vafSPDG~~LAs~~~---------dgtIrlWd 82 (849)
.+++|||||++++++.+++|.+|+..++ ........+. ...+.+++|||||++||+++. +++|++||
T Consensus 19 ~~~~~s~dg~~~~~~~d~~i~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d 96 (719)
T 1z68_A 19 FFPNWISGQEYLHQSADNNIVLYNIETG--QSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYD 96 (719)
T ss_dssp CCCEESSSSEEEEECTTSCEEEEESSSC--CEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred CccEECCCCeEEEEcCCCCEEEEEcCCC--cEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEE
Confidence 4789999998888777889999997653 2222221110 123789999999999999876 79999999
Q ss_pred cCCccc---eecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCc-ceeccc
Q 003087 83 ANGEEI---TRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSG-LTLRRQ 158 (849)
Q Consensus 83 ~~g~~~---~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~-~~l~~~ 158 (849)
+.+... ..+. ..+.+++||||+...+ . +.|+.|++|++.++....... .++. ..+. +
T Consensus 97 ~~~g~~~~~~~l~-------~~~~~~~~SPDG~~la-------~-~~~~~i~~~~~~~g~~~~l~~---~~~~~~v~~-g 157 (719)
T 1z68_A 97 LSNGEFVRGNELP-------RPIQYLCWSPVGSKLA-------Y-VYQNNIYLKQRPGDPPFQITF---NGRENKIFN-G 157 (719)
T ss_dssp TTTTEECCSSCCC-------SSBCCEEECSSTTCEE-------E-EETTEEEEESSTTSCCEECCC---CCBTTTEEE-S
T ss_pred CCCCccccceecC-------cccccceECCCCCEEE-------E-EECCeEEEEeCCCCCcEEEec---CCCcCCeEc-c
Confidence 986554 3331 3467789999876433 2 358899999998766432211 0000 0011 1
Q ss_pred cCCc---------eEEEEEcCCCceEEEEecCC-CCccccC----------------CC----CCCceeeEEEecCCcCc
Q 003087 159 FPQN---------VICTDYHPELSLLSVVSNTD-TSSLTSS----------------GN----SGPCCISLWRRCHNLEL 208 (849)
Q Consensus 159 ~~~~---------V~svafsPdg~lLas~g~d~-t~~~~~~----------------~~----~G~~~I~lW~~~~~~~~ 208 (849)
++.. ..+++|||||+.||+++.++ .++++.. .. .....|.+|++.++...
T Consensus 158 ~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~ 237 (719)
T 1z68_A 158 IPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYV 237 (719)
T ss_dssp SCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHH
T ss_pred cccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCcc
Confidence 1111 25899999999999988663 1222100 00 11225778888764210
Q ss_pred --ccceeccccceeeccCCCccccccceEEEccCCCEEEEEeCC----CcEEEEe----cCCCccccccccccccccccc
Q 003087 209 --EQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTN----GCLYIFE----MDKDNFSLSKFACGERFDLQV 278 (849)
Q Consensus 209 --~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~D----gtv~LWd----~~~~~~~l~~~~~~~~~~~~~ 278 (849)
..+..+ . ...+ |...+..++|||||+++++.... ..|.+|| +.++++ ...+.. ...
T Consensus 238 ~~~~~~~~---~---~~~~--~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~-~~~~~~-~~~---- 303 (719)
T 1z68_A 238 GPQEVPVP---A---MIAS--SDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDC-PKTQEH-IEE---- 303 (719)
T ss_dssp CCEECCCC---H---HHHT--SCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEEC-CGGGEE-EEE----
T ss_pred ceeEccCC---c---cCCC--CcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCce-EEEEec-ccc----
Confidence 011000 0 0113 56688999999999988885433 2488888 666533 111100 000
Q ss_pred ccccCCCCCCCCCCcE-----EEEEecCCE-EEE--EEeCC--cEEEEEecCCc
Q 003087 279 ADSLFDGRTKPISDIT-----DFAWWSDNI-LIL--ARKSS--IITMIDVLSGL 322 (849)
Q Consensus 279 ~~~l~~~~~~~~~~v~-----~vaws~D~~-la~--a~~dg--ti~lwdl~~~~ 322 (849)
.+...+. .++|+|||. ++. ...+| .|.+|++.+++
T Consensus 304 ---------~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~ 348 (719)
T 1z68_A 304 ---------SRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN 348 (719)
T ss_dssp ---------CSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT
T ss_pred ---------cCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc
Confidence 0112222 678999986 443 33556 46667776665
No 143
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.75 E-value=2.2e-17 Score=177.88 Aligned_cols=248 Identities=10% Similarity=0.060 Sum_probs=157.7
Q ss_pred ceEEEEEcCCCCeEEEEe--CCeEEEEecCCCCCcceeeeeecCC----CCEEEEEECCCCCEEEEEe------------
Q 003087 12 KQVSLFISPRGERVAVAA--VNQVTILQKDDDYQEPCGIFNCTGL----GASIYGAWSESHDVLGIVD------------ 73 (849)
Q Consensus 12 ~v~slafSPdG~~LAsas--~~~i~iw~~~~~~~~~~~~~~~~~~----~~v~~vafSPDG~~LAs~~------------ 73 (849)
.+..++|||||+++++++ ++.|.+|+..++ .....+...+. ..+..++|||||++|++++
T Consensus 35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~ 112 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTG--ETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEV 112 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETTTC--CEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEE
T ss_pred CccceEEcCCCCEEEEEeCCCCeEEEEECCCC--CeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccc
Confidence 478899999999876654 468999997643 33333332111 1456899999999999986
Q ss_pred CCCcEEEEecCC-ccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCc
Q 003087 74 DTHTVYFFKANG-EEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSG 152 (849)
Q Consensus 74 ~dgtIrlWd~~g-~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~ 152 (849)
.+++|++||+.+ +.+..+... ..+.+++|+|++.. +++. ++.|.+||+.++.....+.
T Consensus 113 ~~~~i~v~d~~~~~~~~~~~~~-----~~~~~~~~s~dg~~-------l~~~--~~~i~~~d~~~~~~~~~~~------- 171 (337)
T 1pby_B 113 QPTRVALYDAETLSRRKAFEAP-----RQITMLAWARDGSK-------LYGL--GRDLHVMDPEAGTLVEDKP------- 171 (337)
T ss_dssp CCCEEEEEETTTTEEEEEEECC-----SSCCCEEECTTSSC-------EEEE--SSSEEEEETTTTEEEEEEC-------
T ss_pred cCceEEEEECCCCcEEEEEeCC-----CCcceeEECCCCCE-------EEEe--CCeEEEEECCCCcEeeeee-------
Confidence 679999999974 443333221 24567888886542 3333 7899999998765432211
Q ss_pred ceeccccCCceEEEEEcCCCceEEEEecCCCCcc---ccC--CCCCC-------ceeeEEEecCCcCcccceecccccee
Q 003087 153 LTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSL---TSS--GNSGP-------CCISLWRRCHNLELEQLYTTQIEGLY 220 (849)
Q Consensus 153 ~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~---~~~--~~~G~-------~~I~lW~~~~~~~~~~l~~~~~~~~~ 220 (849)
. +.... .++|+|||+.|++++..+. .+ +.. ...|. ..|.+|++.++... .+ .
T Consensus 172 --~-~~~~~---~~~~s~dg~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~-~------- 235 (337)
T 1pby_B 172 --I-QSWEA---ETYAQPDVLAVWNQHESSG-VMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MR-E------- 235 (337)
T ss_dssp --S-TTTTT---TTBCCCBCCCCCCCCTTTT-EEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EE-E-------
T ss_pred --c-cccCC---CceeCCCccEEeeeccCCC-ceeeeeeccccccccccccccccceEEEeCCCCCce-Ee-e-------
Confidence 0 01112 2379999998766544321 00 000 00000 02567776654210 00 0
Q ss_pred eccCCCccccccceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEec
Q 003087 221 CEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWS 300 (849)
Q Consensus 221 ~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~ 300 (849)
... +...+..++|||||++|+++ ++.|.+||+.+++. +..+.. ...+.+++|+|
T Consensus 236 --~~~--~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~-~~~~~~-------------------~~~~~~~~~s~ 289 (337)
T 1pby_B 236 --VRI--MDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNAS-IKRVPL-------------------PHSYYSVNVST 289 (337)
T ss_dssp --EEE--CSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEE-EEEEEC-------------------SSCCCEEEECT
T ss_pred --cCC--CCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcC-cceecC-------------------CCceeeEEECC
Confidence 011 34467789999999999988 79999999987643 223221 12467899999
Q ss_pred CCE-EEEEEeCCcEEEEEecCCccc
Q 003087 301 DNI-LILARKSSIITMIDVLSGLKV 324 (849)
Q Consensus 301 D~~-la~a~~dgti~lwdl~~~~~l 324 (849)
||. +++++.+|.|.+||+.+++.+
T Consensus 290 dg~~l~~~~~~~~i~v~d~~~~~~~ 314 (337)
T 1pby_B 290 DGSTVWLGGALGDLAAYDAETLEKK 314 (337)
T ss_dssp TSCEEEEESBSSEEEEEETTTCCEE
T ss_pred CCCEEEEEcCCCcEEEEECcCCcEE
Confidence 986 667788999999999988743
No 144
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.75 E-value=1.1e-16 Score=187.84 Aligned_cols=243 Identities=10% Similarity=0.055 Sum_probs=159.7
Q ss_pred EEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEec--C-Cccceecc
Q 003087 17 FISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKA--N-GEEITRFT 92 (849)
Q Consensus 17 afSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~--~-g~~~~~l~ 92 (849)
+|||+|+++++++ +++|.+||... ++.+.++.. ++. +..++|||||++|++++.|++|++||+ . ++.+.++.
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t--~~~~~~i~~-g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~ 219 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDS--KKIVKVIDT-GYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK 219 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTT--CCEEEEEEC-STT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCC--ceEEEEEec-Ccc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe
Confidence 4899999998887 68999999764 344444442 233 889999999999999999999999999 3 66555554
Q ss_pred cccccccccEEEEEecC----CcccccccceeEEEEe-CCCcEEEEEecCCCCcccccccccCCcceecc--ccCC-ceE
Q 003087 93 NKHLKVSLPIIGLIAQD----ETDVQRSCLCSFTVFT-SDGFLHQIEISQDPSASISSASASSSGLTLRR--QFPQ-NVI 164 (849)
Q Consensus 93 ~~~~~~~~~V~~l~fs~----~~~~~~s~~~~~~~~s-~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~--~~~~-~V~ 164 (849)
.+ ....+++|+| ++.. +++.+ .+++|.+||..+++....+. .......+ .|+. .+.
T Consensus 220 ~g-----~~p~~va~sp~~~~dg~~-------l~v~~~~~~~v~v~D~~t~~~~~~i~----~~g~~~~~~~~~~~~~v~ 283 (543)
T 1nir_A 220 IG-----IEARSVESSKFKGYEDRY-------TIAGAYWPPQFAIMDGETLEPKQIVS----TRGMTVDTQTYHPEPRVA 283 (543)
T ss_dssp CC-----SEEEEEEECCSTTCTTTE-------EEEEEEESSEEEEEETTTCCEEEEEE----CCEECSSSCCEESCCCEE
T ss_pred cC-----CCcceEEeCCCcCCCCCE-------EEEEEccCCeEEEEeccccccceeec----ccCcccCccccccCCceE
Confidence 21 3468999998 7643 44445 48999999988766543322 00000000 1222 699
Q ss_pred EEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEE
Q 003087 165 CTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFV 244 (849)
Q Consensus 165 svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~L 244 (849)
+++|||+|..+++...+. | .|.+|+......+. +.. +. +...+..++|||||++|
T Consensus 284 ~i~~s~~~~~~~vs~~~~----------g--~i~vvd~~~~~~l~-~~~------i~------~~~~~~~~~~spdg~~l 338 (543)
T 1nir_A 284 AIIASHEHPEFIVNVKET----------G--KVLLVNYKDIDNLT-VTS------IG------AAPFLHDGGWDSSHRYF 338 (543)
T ss_dssp EEEECSSSSEEEEEETTT----------T--EEEEEECTTSSSCE-EEE------EE------CCSSCCCEEECTTSCEE
T ss_pred EEEECCCCCEEEEEECCC----------C--eEEEEEecCCCcce-eEE------ec------cCcCccCceECCCCCEE
Confidence 999999988776554432 2 48899987642211 101 10 23467789999999976
Q ss_pred EE-EeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecC-CEEEE-EE-eCCcEEEEEecC
Q 003087 245 AT-SDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSD-NILIL-AR-KSSIITMIDVLS 320 (849)
Q Consensus 245 As-~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D-~~la~-a~-~dgti~lwdl~~ 320 (849)
.+ +..+++|++||+.++++ +..+.... ..|......+ ++|| +.+.+ +. .|++|+|||+.+
T Consensus 339 ~va~~~~~~v~v~D~~tg~l-~~~i~~g~--------------~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~ 402 (543)
T 1nir_A 339 MTAANNSNKVAVIDSKDRRL-SALVDVGK--------------TPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDP 402 (543)
T ss_dssp EEEEGGGTEEEEEETTTTEE-EEEEECSS--------------SBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred EEEecCCCeEEEEECCCCeE-EEeeccCC--------------CCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCC
Confidence 54 45689999999998754 33333110 1133333333 3576 55544 33 579999999988
No 145
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.74 E-value=6.5e-16 Score=169.94 Aligned_cols=262 Identities=12% Similarity=0.120 Sum_probs=157.0
Q ss_pred cceEEEEEcCCCCeEEEEeC-----CeEEEEecCCCCCcceeeeeec-CCCCEEEEEECCCCCEEEEEe-CCCcEEEEec
Q 003087 11 KKQVSLFISPRGERVAVAAV-----NQVTILQKDDDYQEPCGIFNCT-GLGASIYGAWSESHDVLGIVD-DTHTVYFFKA 83 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas~-----~~i~iw~~~~~~~~~~~~~~~~-~~~~v~~vafSPDG~~LAs~~-~dgtIrlWd~ 83 (849)
..+..++|||||++|++++. +.|.+|+.....+......... +......++| ||++|++++ .+++|.+|++
T Consensus 50 ~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~ 127 (361)
T 3scy_A 50 ANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPI 127 (361)
T ss_dssp SCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEB
T ss_pred CCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEe
Confidence 45667899999999999875 5899998754322221111111 2345677888 999888776 5889999998
Q ss_pred C-Cccceeccc---ccc-------cccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCC------cccccc
Q 003087 84 N-GEEITRFTN---KHL-------KVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPS------ASISSA 146 (849)
Q Consensus 84 ~-g~~~~~l~~---~~~-------~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~------~~~~~~ 146 (849)
. +..+..+.. +.. .....+.+++|+|++... +++...++.|++|++..+.. .....
T Consensus 128 ~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l------~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~- 200 (361)
T 3scy_A 128 GQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYL------LADDLGTDQIHKFNINPNANADNKEKFLTKG- 200 (361)
T ss_dssp CTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEE------EEEETTTTEEEEEEECTTCCTTTCCCCEEEE-
T ss_pred CCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEE------EEEeCCCCEEEEEEEcCCCCcccccceeecc-
Confidence 6 332222211 000 011235789999876421 22224588999999975432 10000
Q ss_pred cccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCC
Q 003087 147 SASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGH 226 (849)
Q Consensus 147 ~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~ 226 (849)
....+.......+..++|||||++|++++..+ + .|.+|++.++. +..+.. +....+
T Consensus 201 ----~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~----------~--~v~v~~~~~g~-~~~~~~------~~~~~~- 256 (361)
T 3scy_A 201 ----TPEAFKVAPGSGPRHLIFNSDGKFAYLINEIG----------G--TVIAFRYADGM-LDEIQT------VAADTV- 256 (361)
T ss_dssp ----EEEEEECCTTCCEEEEEECTTSSEEEEEETTT----------C--EEEEEEEETTE-EEEEEE------EESCSS-
T ss_pred ----cccceecCCCCCCeEEEEcCCCCEEEEEcCCC----------C--eEEEEEecCCc-eEEeEE------EecCCC-
Confidence 00000111223588999999999888876432 1 48999987531 111111 111111
Q ss_pred ccccccceEEEccCCCEEEEEeCC--CcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-
Q 003087 227 EVQLAHPKVLISPQGKFVATSDTN--GCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI- 303 (849)
Q Consensus 227 ~h~~~V~~vafSPDG~~LAs~s~D--gtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~- 303 (849)
+......++|||||++|++++.+ ++|.+|+++...-.+..... +. . ...+.+++|+|||+
T Consensus 257 -~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~-----------~~----~-g~~~~~~~~spdg~~ 319 (361)
T 3scy_A 257 -NAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGY-----------QL----T-GIHPRNFIITPNGKY 319 (361)
T ss_dssp -CCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEE-----------EE----C-SSCCCEEEECTTSCE
T ss_pred -CCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeE-----------ec----C-CCCCceEEECCCCCE
Confidence 33456799999999999776654 89999999621101111110 00 0 13467899999997
Q ss_pred EEEEE-eCCcEEEEEec--CCc
Q 003087 304 LILAR-KSSIITMIDVL--SGL 322 (849)
Q Consensus 304 la~a~-~dgti~lwdl~--~~~ 322 (849)
|+++. .+++|.+|.+. +++
T Consensus 320 l~~~~~~~~~v~v~~~d~~~g~ 341 (361)
T 3scy_A 320 LLVACRDTNVIQIFERDQATGL 341 (361)
T ss_dssp EEEEETTTTEEEEEEECTTTCC
T ss_pred EEEEECCCCCEEEEEEECCCCc
Confidence 66665 67899997665 554
No 146
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.74 E-value=2e-16 Score=166.05 Aligned_cols=223 Identities=8% Similarity=0.022 Sum_probs=145.4
Q ss_pred CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCC-ccceecccccccccccEEEEEec
Q 003087 30 VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANG-EEITRFTNKHLKVSLPIIGLIAQ 108 (849)
Q Consensus 30 ~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g-~~~~~l~~~~~~~~~~V~~l~fs 108 (849)
+++|.+|+..++ ... .+.. +...+.+++|||||++||+++ +++|++||+.+ .....+...+. ...|.+++|+
T Consensus 21 ~~~i~~~d~~~~--~~~-~~~~-~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~--~~~~~~~~~s 93 (297)
T 2ojh_A 21 RSSIEIFNIRTR--KMR-VVWQ-TPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFA--TICNNDHGIS 93 (297)
T ss_dssp CEEEEEEETTTT--EEE-EEEE-ESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTC--CCBCSCCEEC
T ss_pred ceeEEEEeCCCC--cee-eecc-CCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccc--cccccceEEC
Confidence 468999997643 222 2222 256789999999999999987 78999999987 65555443321 1356778898
Q ss_pred CCcccccccceeEEEEe--CCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEcCCCceEE-EEecCCCCc
Q 003087 109 DETDVQRSCLCSFTVFT--SDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLS-VVSNTDTSS 185 (849)
Q Consensus 109 ~~~~~~~s~~~~~~~~s--~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLa-s~g~d~t~~ 185 (849)
|++.. ++..+ .++..++|.+....... ..+. .. ..+.+++|||||+.|+ +++.++
T Consensus 94 pdg~~-------l~~~~~~~~~~~~l~~~~~~~~~~----------~~~~-~~-~~~~~~~~spdg~~l~~~~~~~~--- 151 (297)
T 2ojh_A 94 PDGAL-------YAISDKVEFGKSAIYLLPSTGGTP----------RLMT-KN-LPSYWHGWSPDGKSFTYCGIRDQ--- 151 (297)
T ss_dssp TTSSE-------EEEEECTTTSSCEEEEEETTCCCC----------EECC-SS-SSEEEEEECTTSSEEEEEEEETT---
T ss_pred CCCCE-------EEEEEeCCCCcceEEEEECCCCce----------EEee-cC-CCccceEECCCCCEEEEEECCCC---
Confidence 86643 34445 44677777775322111 1112 11 2489999999999887 555554
Q ss_pred cccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEEe-CCCcEEEEecCCCccc
Q 003087 186 LTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSD-TNGCLYIFEMDKDNFS 264 (849)
Q Consensus 186 ~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s-~Dgtv~LWd~~~~~~~ 264 (849)
.+++|+++.... .. ..... |...+..++|||||++|+.++ .++.++||++......
T Consensus 152 ----------~~~l~~~~~~~~--~~---------~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~ 208 (297)
T 2ojh_A 152 ----------VFDIYSMDIDSG--VE---------TRLTH--GEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSS 208 (297)
T ss_dssp ----------EEEEEEEETTTC--CE---------EECCC--SSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC
T ss_pred ----------ceEEEEEECCCC--cc---------eEccc--CCCccccceECCCCCEEEEEecCCCCccEEEECCCCCC
Confidence 378898754210 01 01112 456788999999999888776 5999999998632111
Q ss_pred ccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EEEEEeC-----------CcEEEEEecCCc
Q 003087 265 LSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LILARKS-----------SIITMIDVLSGL 322 (849)
Q Consensus 265 l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~a~~d-----------gti~lwdl~~~~ 322 (849)
+..+. .+...+..++|+|||. |++++.+ +.|.+||+.+++
T Consensus 209 ~~~~~------------------~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~ 260 (297)
T 2ojh_A 209 VERIT------------------DSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGN 260 (297)
T ss_dssp EEECC------------------CCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCS
T ss_pred cEEEe------------------cCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCC
Confidence 22221 1224578899999986 5566554 569999998876
No 147
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.74 E-value=1e-17 Score=203.63 Aligned_cols=270 Identities=9% Similarity=-0.041 Sum_probs=164.4
Q ss_pred cceEEEEEcCCCCeEEEEeCCeEEEEecCCCCCcceeeeeecCCC----CEEEEEECCCCCEEEEEeCC---------Cc
Q 003087 11 KKQVSLFISPRGERVAVAAVNQVTILQKDDDYQEPCGIFNCTGLG----ASIYGAWSESHDVLGIVDDT---------HT 77 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas~~~i~iw~~~~~~~~~~~~~~~~~~~----~v~~vafSPDG~~LAs~~~d---------gt 77 (849)
....+++|||||++|+++ +++|++|+..++. ....+..+... .+..++|||||++||+++.+ +.
T Consensus 17 ~~~~~~~w~~dg~~~~~~-~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~ 93 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ-ENNILVFNAEYGN--SSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTAS 93 (740)
T ss_dssp CCCCCEEECSSSEEEEEE-TTEEEEEETTTCC--EEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred ccccccEECCCCcEEEEc-CCcEEEEECCCCc--eEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceE
Confidence 346789999999999997 8999999987542 22222211111 22458999999999999887 55
Q ss_pred EEEEecCCccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCc-ceec
Q 003087 78 VYFFKANGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSG-LTLR 156 (849)
Q Consensus 78 IrlWd~~g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~-~~l~ 156 (849)
+++||+.++++..+..+. ..+..++||||+...+. ..|+.|.+|++.++...+.-. .++. ..+.
T Consensus 94 ~~~~d~~~~~~~~l~~~~----~~~~~~~~SPdG~~la~--------~~~~~i~~~~~~~~~~~~lt~---~g~~~~~~~ 158 (740)
T 4a5s_A 94 YDIYDLNKRQLITEERIP----NNTQWVTWSPVGHKLAY--------VWNNDIYVKIEPNLPSYRITW---TGKEDIIYN 158 (740)
T ss_dssp EEEEETTTTEECCSSCCC----TTEEEEEECSSTTCEEE--------EETTEEEEESSTTSCCEECCS---CCBTTTEEE
T ss_pred EEEEECCCCcEEEcccCC----CcceeeEECCCCCEEEE--------EECCeEEEEECCCCceEEEcC---CCCccceec
Confidence 679999876666665432 45889999998765432 367899999987765432210 0000 1111
Q ss_pred cccCC---------ceEEEEEcCCCceEEEEecCCC-CccccC------------------CCCC----CceeeEEEecC
Q 003087 157 RQFPQ---------NVICTDYHPELSLLSVVSNTDT-SSLTSS------------------GNSG----PCCISLWRRCH 204 (849)
Q Consensus 157 ~~~~~---------~V~svafsPdg~lLas~g~d~t-~~~~~~------------------~~~G----~~~I~lW~~~~ 204 (849)
| ++. ...+++|||||+.||.++.|.+ +++|.+ +.+| ...|.+|++.+
T Consensus 159 g-~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~ 237 (740)
T 4a5s_A 159 G-ITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDS 237 (740)
T ss_dssp S-BCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTS
T ss_pred C-cccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCC
Confidence 1 111 1245899999999999887654 333311 0112 12467787776
Q ss_pred ---CcCcc--cceeccccceeeccCCCccccccceEEEccCCCEEEEEeC----CCcEEEEecCCCc----ccccccccc
Q 003087 205 ---NLELE--QLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDT----NGCLYIFEMDKDN----FSLSKFACG 271 (849)
Q Consensus 205 ---~~~~~--~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~----Dgtv~LWd~~~~~----~~l~~~~~~ 271 (849)
+.... .+..+ . ...+ |...+..++|||||+++|.... +.+|.+||+.+++ + .......
T Consensus 238 ~~~~~~~~~~~l~~~---~---~~~~--~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~-~~~~~l~ 308 (740)
T 4a5s_A 238 LSSVTNATSIQITAP---A---SMLI--GDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNC-LVARQHI 308 (740)
T ss_dssp CCSSSCCCEEEECCC---H---HHHT--SCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEE-CGGGCEE
T ss_pred CCCCCcceEEEecCC---c---cCCC--CCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccce-eEEEEee
Confidence 42101 11100 0 0012 5567899999999997776543 3479999999875 2 1111100
Q ss_pred cccccccccccCCCCCCCCCC-----cEEEEEecCCE-EE-EEE-eCC--cEEEEEecCCc
Q 003087 272 ERFDLQVADSLFDGRTKPISD-----ITDFAWWSDNI-LI-LAR-KSS--IITMIDVLSGL 322 (849)
Q Consensus 272 ~~~~~~~~~~l~~~~~~~~~~-----v~~vaws~D~~-la-~a~-~dg--ti~lwdl~~~~ 322 (849)
. + .+... ..+++|+|||+ ++ .++ .+| .|.+||+.+++
T Consensus 309 ~-~-------------~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~ 355 (740)
T 4a5s_A 309 E-M-------------STTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKD 355 (740)
T ss_dssp E-E-------------CSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSS
T ss_pred e-c-------------cCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCc
Confidence 0 0 01111 23578999996 45 454 455 57788887765
No 148
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.74 E-value=5.2e-17 Score=176.07 Aligned_cols=251 Identities=11% Similarity=-0.009 Sum_probs=155.9
Q ss_pred EEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEE-EEeCCCcEEEEecC-Cccceec
Q 003087 15 SLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLG-IVDDTHTVYFFKAN-GEEITRF 91 (849)
Q Consensus 15 slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LA-s~~~dgtIrlWd~~-g~~~~~l 91 (849)
.++++++++++++++ +++|.+||..++ +....+..........++|||||++++ +++.+++|++||+. |+.+..+
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~--~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~ 81 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASD--TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHA 81 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTT--EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCC--cEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEE
Confidence 467899999999987 689999997642 333333322112467899999999665 55678999999997 5544444
Q ss_pred ccccc--cccccEEEEEecCCcccccccceeEEEEeC------------CCcEEEEEecCCCCcccccccccCCcceecc
Q 003087 92 TNKHL--KVSLPIIGLIAQDETDVQRSCLCSFTVFTS------------DGFLHQIEISQDPSASISSASASSSGLTLRR 157 (849)
Q Consensus 92 ~~~~~--~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~------------Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~ 157 (849)
...+. .....+.+++|+|++.. +++.+. ++.|.+||+.+++...... .+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~spdg~~-------l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~--------~~~- 145 (349)
T 1jmx_B 82 NLSSVPGEVGRSMYSFAISPDGKE-------VYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVR--------TFP- 145 (349)
T ss_dssp ESCCSTTEEEECSSCEEECTTSSE-------EEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSE--------EEE-
T ss_pred EcccccccccccccceEECCCCCE-------EEEEcccccccccccccCCCeEEEEECCCccccceee--------ecc-
Confidence 32210 00123567889886542 344443 4899999998754322211 111
Q ss_pred ccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceecc-------------------cc-
Q 003087 158 QFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQ-------------------IE- 217 (849)
Q Consensus 158 ~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~-------------------~~- 217 (849)
++..+.+++|+|||+ +++++.+ |.+|++.++.....+.... ..
T Consensus 146 -~~~~~~~~~~s~dg~-l~~~~~~---------------i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (349)
T 1jmx_B 146 -MPRQVYLMRAADDGS-LYVAGPD---------------IYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRH 208 (349)
T ss_dssp -CCSSCCCEEECTTSC-EEEESSS---------------EEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTC
T ss_pred -CCCcccceeECCCCc-EEEccCc---------------EEEEeCCCCceeccccccccCCccccCccceeeecCCCcce
Confidence 233589999999999 5554332 4555554321000000000 00
Q ss_pred ----------------------------------ceee--ccCCCccccccceEEEcc-CCCEEEEEeCCCcEEEEecCC
Q 003087 218 ----------------------------------GLYC--EPKGHEVQLAHPKVLISP-QGKFVATSDTNGCLYIFEMDK 260 (849)
Q Consensus 218 ----------------------------------~~~~--~~~g~~h~~~V~~vafSP-DG~~LAs~s~Dgtv~LWd~~~ 260 (849)
+.+. .... +...+..++||| ||++|+++ ++.|.+||+.+
T Consensus 209 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~ 284 (349)
T 1jmx_B 209 EFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFAD--LTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQ 284 (349)
T ss_dssp EEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEE--CSSCEEEEEECSSCTTEEEEE--ESEEEEEETTT
T ss_pred eEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEeccccc--CCCcceeeEecCCCCCEEEEE--cCeEEEEECcc
Confidence 0000 0000 122567889999 99999988 89999999987
Q ss_pred CcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EEEEEeCCcEEEEEecCCccc
Q 003087 261 DNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LILARKSSIITMIDVLSGLKV 324 (849)
Q Consensus 261 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~a~~dgti~lwdl~~~~~l 324 (849)
++. ++.+.. ...+..++|+|||. +++++.+++|.+||+.+++.+
T Consensus 285 ~~~-~~~~~~-------------------~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~ 329 (349)
T 1jmx_B 285 RKL-IKAANL-------------------DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKV 329 (349)
T ss_dssp TEE-EEEEEC-------------------SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEE
T ss_pred CeE-EEEEcC-------------------CCCccceEECCCCCEEEEecCCCeEEEEecccccee
Confidence 643 223221 12357899999975 677788899999999988743
No 149
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.73 E-value=7.1e-17 Score=178.94 Aligned_cols=261 Identities=10% Similarity=0.002 Sum_probs=156.0
Q ss_pred ceEEEEEcCCCCeEEEEeCCeEEEEecC-CCCCcceeeeeecCCCCEEEEEECCCCCE--EEEEe-------------CC
Q 003087 12 KQVSLFISPRGERVAVAAVNQVTILQKD-DDYQEPCGIFNCTGLGASIYGAWSESHDV--LGIVD-------------DT 75 (849)
Q Consensus 12 ~v~slafSPdG~~LAsas~~~i~iw~~~-~~~~~~~~~~~~~~~~~v~~vafSPDG~~--LAs~~-------------~d 75 (849)
.+..++|||||++|++++.++|.+|+.. ++ ...........+....++|||||++ +++++ .+
T Consensus 41 ~~~~~a~spdg~~l~~~~~~~v~~~~~~~~g--~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~ 118 (365)
T 1jof_A 41 PISWMTFDHERKNIYGAAMKKWSSFAVKSPT--EIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFA 118 (365)
T ss_dssp CCSEEEECTTSSEEEEEEBTEEEEEEEEETT--EEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSC
T ss_pred CCcEEEECCCCCEEEEEccceEEEEEECCCC--CEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCC
Confidence 5778999999999998876699999975 32 2222111111123456999999994 55664 68
Q ss_pred CcEEEEecC--CccceecccccccccccEEEEEecCCcccccccceeEEEEe-CCCcEEEEEec-CCCCcccccccccCC
Q 003087 76 HTVYFFKAN--GEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFT-SDGFLHQIEIS-QDPSASISSASASSS 151 (849)
Q Consensus 76 gtIrlWd~~--g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s-~Dg~v~lw~~~-~~~~~~~~~~~~~~~ 151 (849)
|++++|++. |+....+..........+.+++|+|++.. +++.+ .++.|++|++. +++.....
T Consensus 119 g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~-------l~~~~~~~~~v~~~~~~~~g~~~~~~------- 184 (365)
T 1jof_A 119 GYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETY-------LYSADLTANKLWTHRKLASGEVELVG------- 184 (365)
T ss_dssp CEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSE-------EEEEETTTTEEEEEEECTTSCEEEEE-------
T ss_pred ceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCE-------EEEEcCCCCEEEEEEECCCCCEEEee-------
Confidence 999999985 54332222100011245789999997642 33333 46899999997 55432110
Q ss_pred cceeccc-cCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceee-ccCCCccc
Q 003087 152 GLTLRRQ-FPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYC-EPKGHEVQ 229 (849)
Q Consensus 152 ~~~l~~~-~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~-~~~g~~h~ 229 (849)
.+... +...+..++|||||+.|++++..+ + .|.+|+++... .......+....+. ...+ |.
T Consensus 185 --~~~~~~~g~~p~~~~~spdg~~l~v~~~~~----------~--~v~v~~~~~~~-g~~~~~~~~~~~~~~~~~g--~~ 247 (365)
T 1jof_A 185 --SVDAPDPGDHPRWVAMHPTGNYLYALMEAG----------N--RICEYVIDPAT-HMPVYTHHSFPLIPPGIPD--RD 247 (365)
T ss_dssp --EEECSSTTCCEEEEEECTTSSEEEEEETTT----------T--EEEEEEECTTT-CCEEEEEEEEESSCTTCCC--BC
T ss_pred --eEecCCCCCCCCEeEECCCCCEEEEEECCC----------C--eEEEEEEeCCC-CcEEEccceEEcCCCCcCC--cc
Confidence 11100 124589999999999998877543 1 48889876321 00000000000000 0112 22
Q ss_pred c------ccceEE-EccCCCEEEEEeCCC------cEEEEecC-CCcccccccccccccccccccccCCCCCCCCCCcEE
Q 003087 230 L------AHPKVL-ISPQGKFVATSDTNG------CLYIFEMD-KDNFSLSKFACGERFDLQVADSLFDGRTKPISDITD 295 (849)
Q Consensus 230 ~------~V~~va-fSPDG~~LAs~s~Dg------tv~LWd~~-~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~ 295 (849)
. .+..++ |||||++|++++.++ +|++|++. +++ +....... . .+...+..
T Consensus 248 ~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~--~~~~~~~~----------~----~~~~~~~~ 311 (365)
T 1jof_A 248 PETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGS--IEKQLFLS----------P----TPTSGGHS 311 (365)
T ss_dssp TTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSC--EEEEEEEE----------E----CSSCCTTC
T ss_pred cccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCC--EEEeeeee----------e----cCCCCccc
Confidence 2 477899 999999998776533 89999996 332 22110000 0 01123456
Q ss_pred EEEec---CCE-EEEEEe-CCcEEEEEecCC
Q 003087 296 FAWWS---DNI-LILARK-SSIITMIDVLSG 321 (849)
Q Consensus 296 vaws~---D~~-la~a~~-dgti~lwdl~~~ 321 (849)
++|+| ||+ |+++.. +++|+||++...
T Consensus 312 ~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 312 NAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp CCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred ceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 78999 675 667765 589999999765
No 150
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.73 E-value=4.2e-17 Score=186.07 Aligned_cols=213 Identities=13% Similarity=0.110 Sum_probs=142.0
Q ss_pred CCEEEEEECCCCCEEEEEeCCCcEEEEecCCcc-----------ceecc-cccccccccEEEEEecCCcccccccceeEE
Q 003087 55 GASIYGAWSESHDVLGIVDDTHTVYFFKANGEE-----------ITRFT-NKHLKVSLPIIGLIAQDETDVQRSCLCSFT 122 (849)
Q Consensus 55 ~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~~-----------~~~l~-~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~ 122 (849)
..+..++|||++.+||+|+.|| |+||+..... +.... .....+...|.+++|+|++.. ++
T Consensus 37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~-------la 108 (434)
T 2oit_A 37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLT-------LS 108 (434)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCE-------EE
T ss_pred CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCE-------EE
Confidence 3567899999999999999988 9998753110 00000 001112346999999987543 33
Q ss_pred ----EEeCCCcEEEEEecCCC-----CcccccccccCCcceeccccCCceEEEEEcCC-CceEEEEecCCCCccccCCCC
Q 003087 123 ----VFTSDGFLHQIEISQDP-----SASISSASASSSGLTLRRQFPQNVICTDYHPE-LSLLSVVSNTDTSSLTSSGNS 192 (849)
Q Consensus 123 ----~~s~Dg~v~lw~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~V~svafsPd-g~lLas~g~d~t~~~~~~~~~ 192 (849)
+++.||+|++||+.++. ....+. ....+. +|...|.+++|||+ +.+||+++.|++
T Consensus 109 v~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~-----~~~~~~-~h~~~V~~v~~~p~~~~~las~s~Dg~--------- 173 (434)
T 2oit_A 109 ACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFA-----YHKLLK-DAGGMVIDMKWNPTVPSMVAVCLADGS--------- 173 (434)
T ss_dssp EEEEETTTEEEEEEEEHHHHHCTTCSSCCCSE-----EEECCC-SGGGSEEEEEECSSCTTEEEEEETTSC---------
T ss_pred EEEeccCCCceEEEEEccccccCCcCCcceee-----eeeccC-CCCCceEEEEECCCCCCEEEEEECCCe---------
Confidence 45789999999997541 100000 001223 34567999999998 889999999974
Q ss_pred CCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEEeCCCcEEEEecCCCccccccccccc
Q 003087 193 GPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGE 272 (849)
Q Consensus 193 G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~ 272 (849)
|++||+..+. .+. ...+ |...|.+++|||||++||+++.||+|++||+.+. . ...+....
T Consensus 174 ----v~iwD~~~~~---~~~---------~~~~--~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~~-~-~~~~~~~~ 233 (434)
T 2oit_A 174 ----IAVLQVTETV---KVC---------ATLP--STVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQ-E-KKVIPCPP 233 (434)
T ss_dssp ----EEEEEESSSE---EEE---------EEEC--GGGCEEEEEECTTSSCEEEEETTSCEEEECTTCC-E-EEEECCCT
T ss_pred ----EEEEEcCCCc---cee---------eccC--CCCceeEEEEcCCCCEEEEEcCCCcEEEEccCCc-c-cccccCCc
Confidence 8999997641 111 1123 7789999999999999999999999999999832 1 22322111
Q ss_pred ccccccccccCCCCCCCCCCcEEEEEecCCEEEEEE--eCC------cEEEEEecCC
Q 003087 273 RFDLQVADSLFDGRTKPISDITDFAWWSDNILILAR--KSS------IITMIDVLSG 321 (849)
Q Consensus 273 ~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~la~a~--~dg------ti~lwdl~~~ 321 (849)
. +. .++...|.+++|++++.++++. .+| .+++|++...
T Consensus 234 ~--------~~---~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 234 F--------YE---SDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp T--------CC---TTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred c--------cC---CCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 0 00 1233468999999999765443 343 3899999865
No 151
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.73 E-value=7.1e-17 Score=203.68 Aligned_cols=235 Identities=11% Similarity=0.079 Sum_probs=166.1
Q ss_pred ceEEEEEcCCCCeEEEEeCCeEEEEecCCCCCcceeeeeec----------CCCCEEEEEEC-CCCCEEEEEeCCCcEEE
Q 003087 12 KQVSLFISPRGERVAVAAVNQVTILQKDDDYQEPCGIFNCT----------GLGASIYGAWS-ESHDVLGIVDDTHTVYF 80 (849)
Q Consensus 12 ~v~slafSPdG~~LAsas~~~i~iw~~~~~~~~~~~~~~~~----------~~~~v~~vafS-PDG~~LAs~~~dgtIrl 80 (849)
.+..++|||||++||+++++.|.+|+... . .+..+... +...+.+++|| |||++||+++ +++|++
T Consensus 246 ~~~~~~~SpDG~~la~~~~~~i~~~d~~~--~-~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~ 321 (1045)
T 1k32_A 246 DYYPRHLNTDGRRILFSKGGSIYIFNPDT--E-KIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFI 321 (1045)
T ss_dssp SSCEEEEEESSSCEEEEETTEEEEECTTT--C-CEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEE
T ss_pred CcceeeEcCCCCEEEEEeCCEEEEecCCc--e-EeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEE
Confidence 35678999999999999999999998632 1 12222110 01257899999 9999999998 789999
Q ss_pred EecCCccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEE-EEEecCCCCcccccccccCCcceecccc
Q 003087 81 FKANGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLH-QIEISQDPSASISSASASSSGLTLRRQF 159 (849)
Q Consensus 81 Wd~~g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~-lw~~~~~~~~~~~~~~~~~~~~~l~~~~ 159 (849)
|++.+.....+..+.. ..+.+++|+ ++. .++.++.++.+. +|++.++... .+. ++
T Consensus 322 ~~~~~~~~~~~~~~~~---~~~~~~~~s-dg~-------~l~~~s~~~~l~~~~d~~~~~~~------------~l~-~~ 377 (1045)
T 1k32_A 322 QDVSGTYVLKVPEPLR---IRYVRRGGD-TKV-------AFIHGTREGDFLGIYDYRTGKAE------------KFE-EN 377 (1045)
T ss_dssp ECTTSSBEEECSCCSC---EEEEEECSS-SEE-------EEEEEETTEEEEEEEETTTCCEE------------ECC-CC
T ss_pred EcCCCCceEEccCCCc---ceEEeeeEc-CCC-------eEEEEECCCceEEEEECCCCCce------------Eec-CC
Confidence 9998655455543321 157788887 543 255556677777 8887654421 122 33
Q ss_pred CCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEcc
Q 003087 160 PQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISP 239 (849)
Q Consensus 160 ~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSP 239 (849)
...+.+++|||||+.||+++.++ .|++|++.++.. ..+. .+ |...|..++|||
T Consensus 378 ~~~~~~~~~SpDG~~la~~~~~~-------------~v~~~d~~tg~~-~~~~-----------~~--~~~~v~~~~~Sp 430 (1045)
T 1k32_A 378 LGNVFAMGVDRNGKFAVVANDRF-------------EIMTVDLETGKP-TVIE-----------RS--REAMITDFTISD 430 (1045)
T ss_dssp CCSEEEEEECTTSSEEEEEETTS-------------EEEEEETTTCCE-EEEE-----------EC--SSSCCCCEEECT
T ss_pred ccceeeeEECCCCCEEEEECCCC-------------eEEEEECCCCce-EEec-----------cC--CCCCccceEECC
Confidence 45699999999999999988775 389999876421 1111 12 566889999999
Q ss_pred CCCEEEEEeCCC----------cEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EEEEE
Q 003087 240 QGKFVATSDTNG----------CLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LILAR 308 (849)
Q Consensus 240 DG~~LAs~s~Dg----------tv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~a~ 308 (849)
||++||+++.++ +|++||+.+++ +..+. .+...+.+++|+|||+ |+.++
T Consensus 431 DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~--~~~l~------------------~~~~~~~~~~~spdG~~l~~~s 490 (1045)
T 1k32_A 431 NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK--IFAAT------------------TENSHDYAPAFDADSKNLYYLS 490 (1045)
T ss_dssp TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE--EEECS------------------CSSSBEEEEEECTTSCEEEEEE
T ss_pred CCCeEEEEecCccccccCCCCCeEEEEECCCCc--EEEee------------------CCCcccCCceEcCCCCEEEEEe
Confidence 999999988754 99999998763 22222 1234577899999996 67788
Q ss_pred eCCcEEEEEecCC
Q 003087 309 KSSIITMIDVLSG 321 (849)
Q Consensus 309 ~dgti~lwdl~~~ 321 (849)
.++...+|+....
T Consensus 491 ~~~~~~~~~~~~~ 503 (1045)
T 1k32_A 491 YRSLDPSPDRVVL 503 (1045)
T ss_dssp SCCCCCEECSSSS
T ss_pred cccCCcCcchhcc
Confidence 8888888886543
No 152
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.71 E-value=9.3e-17 Score=183.24 Aligned_cols=208 Identities=11% Similarity=0.018 Sum_probs=140.6
Q ss_pred cceEEEEEcCCCCeEEEEeCCeEEEEecCCCCC--------cceeee----eecCCCCEEEEEECCCCCEEE----EEeC
Q 003087 11 KKQVSLFISPRGERVAVAAVNQVTILQKDDDYQ--------EPCGIF----NCTGLGASIYGAWSESHDVLG----IVDD 74 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas~~~i~iw~~~~~~~--------~~~~~~----~~~~~~~v~~vafSPDG~~LA----s~~~ 74 (849)
..+..|++||++.+||+++.+.++||+..+... .....+ .......|.+++|||||++|| +|+.
T Consensus 37 ~~~n~lavs~~~~~l~~~~~dgv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~ 116 (434)
T 2oit_A 37 ERSSLLAVSNKYGLVFAGGASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEY 116 (434)
T ss_dssp SCCBCEEEETTTTEEEEEETTEEEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTT
T ss_pred CCccEEEEecCCCEEEEECCCEEEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCC
Confidence 357899999999999999877799986431000 001111 111245699999999999999 8889
Q ss_pred CCcEEEEecCCc---------cc--eecccccccccccEEEEEecCC-cccccccceeEEEEeCCCcEEEEEecCCCCcc
Q 003087 75 THTVYFFKANGE---------EI--TRFTNKHLKVSLPIIGLIAQDE-TDVQRSCLCSFTVFTSDGFLHQIEISQDPSAS 142 (849)
Q Consensus 75 dgtIrlWd~~g~---------~~--~~l~~~~~~~~~~V~~l~fs~~-~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~ 142 (849)
|++|+|||+... .+ ..... ++...|.+|+|+|+ +. .|++++.||+|++||+.++....
T Consensus 117 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~---~h~~~V~~v~~~p~~~~-------~las~s~Dg~v~iwD~~~~~~~~ 186 (434)
T 2oit_A 117 GSIIAFFDVRTFSNEAKQQKRPFAYHKLLK---DAGGMVIDMKWNPTVPS-------MVAVCLADGSIAVLQVTETVKVC 186 (434)
T ss_dssp EEEEEEEEHHHHHCTTCSSCCCSEEEECCC---SGGGSEEEEEECSSCTT-------EEEEEETTSCEEEEEESSSEEEE
T ss_pred CceEEEEEccccccCCcCCcceeeeeeccC---CCCCceEEEEECCCCCC-------EEEEEECCCeEEEEEcCCCccee
Confidence 999999998532 11 11111 12467999999985 32 36777999999999998763211
Q ss_pred cccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeec
Q 003087 143 ISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCE 222 (849)
Q Consensus 143 ~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~ 222 (849)
... +|...|.+++|||+|++||+|+.|++ |++|++.+.. ...+.. . ...
T Consensus 187 -----------~~~-~~~~~v~~v~wspdg~~lasgs~dg~-------------v~iwd~~~~~-~~~~~~-~----~~~ 235 (434)
T 2oit_A 187 -----------ATL-PSTVAVTSVCWSPKGKQLAVGKQNGT-------------VVQYLPTLQE-KKVIPC-P----PFY 235 (434)
T ss_dssp -----------EEE-CGGGCEEEEEECTTSSCEEEEETTSC-------------EEEECTTCCE-EEEECC-C----TTC
T ss_pred -----------ecc-CCCCceeEEEEcCCCCEEEEEcCCCc-------------EEEEccCCcc-cccccC-C----ccc
Confidence 112 23457999999999999999998863 8999887321 000100 0 000
Q ss_pred cCCCccccccceEEEccCCCEEEEEe-CCCc------EEEEecCCC
Q 003087 223 PKGHEVQLAHPKVLISPQGKFVATSD-TNGC------LYIFEMDKD 261 (849)
Q Consensus 223 ~~g~~h~~~V~~vafSPDG~~LAs~s-~Dgt------v~LWd~~~~ 261 (849)
..+ |...|.+++|+|++.++++.+ .||. +++|++.+.
T Consensus 236 ~~~--~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 236 ESD--HPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp CTT--SCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred CCC--CceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 011 445899999999999986643 4443 899999864
No 153
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.71 E-value=1.3e-15 Score=166.35 Aligned_cols=213 Identities=9% Similarity=0.100 Sum_probs=133.4
Q ss_pred cceEEEEEcCCCCeEEEEe--CCeEEEEecCCC-CCcceeeeeecC--------CCCEEEEEECCCCCEEEEEeCCCcEE
Q 003087 11 KKQVSLFISPRGERVAVAA--VNQVTILQKDDD-YQEPCGIFNCTG--------LGASIYGAWSESHDVLGIVDDTHTVY 79 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas--~~~i~iw~~~~~-~~~~~~~~~~~~--------~~~v~~vafSPDG~~LAs~~~dgtIr 79 (849)
..+..|+|||||++|++++ +++|.+|+...+ ....+......+ ...+.+++|||||+++++...+++|+
T Consensus 86 ~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~ 165 (347)
T 3hfq_A 86 TPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVY 165 (347)
T ss_dssp CCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEE
T ss_pred CCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEE
Confidence 4678899999999999887 478999997532 111222221111 12478999999999777777899999
Q ss_pred EEecC-CccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecC--CCCcccccccccCCcceec
Q 003087 80 FFKAN-GEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQ--DPSASISSASASSSGLTLR 156 (849)
Q Consensus 80 lWd~~-g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~--~~~~~~~~~~~~~~~~~l~ 156 (849)
+|++. +..+..+.............++|+|++... +++...++.|++|++.. +....... + ..+.
T Consensus 166 ~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l------~v~~~~~~~v~v~~~~~~~g~~~~~~~--~----~~~~ 233 (347)
T 3hfq_A 166 VYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYA------FLAGELSSQIASLKYDTQTGAFTQLGI--V----KTIP 233 (347)
T ss_dssp EEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEE------EEEETTTTEEEEEEEETTTTEEEEEEE--E----ESSC
T ss_pred EEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEE------EEEeCCCCEEEEEEecCCCCceEEeee--e----eecC
Confidence 99997 333332211111111346789999876421 22235788999999875 32211100 0 0001
Q ss_pred ccc--CCceEEEEEcCCCceEEEEec-CCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccc
Q 003087 157 RQF--PQNVICTDYHPELSLLSVVSN-TDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHP 233 (849)
Q Consensus 157 ~~~--~~~V~svafsPdg~lLas~g~-d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~ 233 (849)
.+. ...+..++|||||++|++++. ++ .|.+|++.....+..+.. +. . +...+.
T Consensus 234 ~~~~~~~~~~~i~~spdG~~l~v~~~~~~-------------~v~v~~~~~~g~~~~~~~------~~---~--~~~~~~ 289 (347)
T 3hfq_A 234 ADYTAHNGAAAIRLSHDGHFLYVSNRGYN-------------TLAVFAVTADGHLTLIQQ------IS---T--EGDFPR 289 (347)
T ss_dssp TTCCSCCEEEEEEECTTSCEEEEEEETTT-------------EEEEEEECGGGCEEEEEE------EE---C--SSSCCC
T ss_pred CCCCCCCcceeEEECCCCCEEEEEeCCCC-------------EEEEEEECCCCcEEEeEE------Ee---c--CCCCcC
Confidence 110 135899999999998865544 33 489999874211111111 11 1 334678
Q ss_pred eEEEccCCCEEEEEeCC-CcEEEEecC
Q 003087 234 KVLISPQGKFVATSDTN-GCLYIFEMD 259 (849)
Q Consensus 234 ~vafSPDG~~LAs~s~D-gtv~LWd~~ 259 (849)
.++|||||++|++++.+ ++|.+|+++
T Consensus 290 ~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 290 DFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred eEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 99999999999988865 999999665
No 154
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.70 E-value=9e-16 Score=165.61 Aligned_cols=246 Identities=12% Similarity=0.090 Sum_probs=145.8
Q ss_pred CeEEEE-e-CCeEEEEecCCC-CCcceeeeeecCCCCEEEEEECCCCCEEEEEeCC-CcEEEEecC--Cccceecccccc
Q 003087 23 ERVAVA-A-VNQVTILQKDDD-YQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDT-HTVYFFKAN--GEEITRFTNKHL 96 (849)
Q Consensus 23 ~~LAsa-s-~~~i~iw~~~~~-~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~d-gtIrlWd~~--g~~~~~l~~~~~ 96 (849)
++|.++ + +++|.+|+.... ....... ..+...+..++|||||++|++++.+ ++|++|++. +..+..+.....
T Consensus 5 ~~l~~~~~~~~~v~~~~~~~~~~~~~~~~--~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 82 (343)
T 1ri6_A 5 QTVYIASPESQQIHVWNLNHEGALTLTQV--VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESAL 82 (343)
T ss_dssp EEEEEEEGGGTEEEEEEECTTSCEEEEEE--EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEC
T ss_pred EEEEEeCCCCCeEEEEEECCCCcEEEeee--EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeecccccc
Confidence 444444 4 689999987531 1111221 1234567889999999999988886 999999986 333222211111
Q ss_pred cccccEEEEEecCCcccccccceeEEEEe-CCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEcCCCceE
Q 003087 97 KVSLPIIGLIAQDETDVQRSCLCSFTVFT-SDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLL 175 (849)
Q Consensus 97 ~~~~~V~~l~fs~~~~~~~s~~~~~~~~s-~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lL 175 (849)
...+.+++|+|++.. +++.+ .+|.|.+|++..+...... ..+. . ...+.+++|+|||+.|
T Consensus 83 --~~~~~~~~~s~dg~~-------l~~~~~~~~~i~~~d~~~~~~~~~~--------~~~~-~-~~~~~~~~~s~dg~~l 143 (343)
T 1ri6_A 83 --PGSLTHISTDHQGQF-------VFVGSYNAGNVSVTRLEDGLPVGVV--------DVVE-G-LDGCHSANISPDNRTL 143 (343)
T ss_dssp --SSCCSEEEECTTSSE-------EEEEETTTTEEEEEEEETTEEEEEE--------EEEC-C-CTTBCCCEECTTSSEE
T ss_pred --CCCCcEEEEcCCCCE-------EEEEecCCCeEEEEECCCCcccccc--------cccc-C-CCCceEEEECCCCCEE
Confidence 124678899886542 33334 4899999999522211111 1122 1 1248999999999988
Q ss_pred EEEe-cCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEEe-CCCcE
Q 003087 176 SVVS-NTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSD-TNGCL 253 (849)
Q Consensus 176 as~g-~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s-~Dgtv 253 (849)
++++ .++ .|.+|++........+.. ..+... ....+..++|+|||++|++++ .+++|
T Consensus 144 ~~~~~~~~-------------~v~~~d~~~~~~~~~~~~----~~~~~~----~~~~~~~~~~~pdg~~l~~~~~~~~~i 202 (343)
T 1ri6_A 144 WVPALKQD-------------RICLFTVSDDGHLVAQDP----AEVTTV----EGAGPRHMVFHPNEQYAYCVNELNSSV 202 (343)
T ss_dssp EEEEGGGT-------------EEEEEEECTTSCEEEEEE----EEEECS----TTCCEEEEEECTTSSEEEEEETTTTEE
T ss_pred EEecCCCC-------------EEEEEEecCCCceeeecc----cccccC----CCCCcceEEECCCCCEEEEEeCCCCEE
Confidence 8876 443 389999975211111110 001111 123677899999999776555 89999
Q ss_pred EEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EEEE-EeCCcEEEEEec
Q 003087 254 YIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LILA-RKSSIITMIDVL 319 (849)
Q Consensus 254 ~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~a-~~dgti~lwdl~ 319 (849)
++|++....-.+...... . .+... ......+..++|+|||. ++++ +.+|.|.+|++.
T Consensus 203 ~~~~~~~~~g~~~~~~~~----~----~~~~~-~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~ 261 (343)
T 1ri6_A 203 DVWELKDPHGNIECVQTL----D----MMPEN-FSDTRWAADIHITPDGRHLYACDRTASLITVFSVS 261 (343)
T ss_dssp EEEESSCTTSCCEEEEEE----E----CSCTT-CCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred EEEEecCCCCcEEEEeec----c----ccCcc-ccccCCccceEECCCCCEEEEEecCCCEEEEEEEc
Confidence 999996421111111100 0 00000 01123567899999985 4434 478999999998
No 155
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.69 E-value=6.5e-16 Score=186.29 Aligned_cols=252 Identities=9% Similarity=-0.024 Sum_probs=147.7
Q ss_pred eEEEEEcCCCCeEEEEeC----------CeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEe
Q 003087 13 QVSLFISPRGERVAVAAV----------NQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFK 82 (849)
Q Consensus 13 v~slafSPdG~~LAsas~----------~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd 82 (849)
|.+++|||||++||++++ ++|.+|+..++ ........ ...+..++|||||+.||+++ +++|++|+
T Consensus 62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g--~~~~~~~l--~~~~~~~~~SPDG~~la~~~-~~~i~~~~ 136 (719)
T 1z68_A 62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNG--EFVRGNEL--PRPIQYLCWSPVGSKLAYVY-QNNIYLKQ 136 (719)
T ss_dssp CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTT--EECCSSCC--CSSBCCEEECSSTTCEEEEE-TTEEEEES
T ss_pred eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCC--ccccceec--CcccccceECCCCCEEEEEE-CCeEEEEe
Confidence 889999999999999864 68999997653 21100111 24578899999999999986 68999999
Q ss_pred cCCccceecccc-ccc-----cc---------ccEEEEEecCCcccccccceeEEEEeCC--------------------
Q 003087 83 ANGEEITRFTNK-HLK-----VS---------LPIIGLIAQDETDVQRSCLCSFTVFTSD-------------------- 127 (849)
Q Consensus 83 ~~g~~~~~l~~~-~~~-----~~---------~~V~~l~fs~~~~~~~s~~~~~~~~s~D-------------------- 127 (849)
+.+....++... +.. +. ....+++|+||+...+ ..+.|
T Consensus 137 ~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la-------~~~~d~~~~~~~~~~~~~~~~~~~~ 209 (719)
T 1z68_A 137 RPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLA-------YAEFNDTDIPVIAYSYYGDEQYPRT 209 (719)
T ss_dssp STTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEE-------EEEEECTTSCEEEEEECCSSSSCEE
T ss_pred CCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEE-------EEEECCCCCceEEeeccCCCCCccc
Confidence 975444444321 110 00 1114789999765332 22222
Q ss_pred --------------CcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCC
Q 003087 128 --------------GFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSG 193 (849)
Q Consensus 128 --------------g~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G 193 (849)
.+|++||+.++....... + .....+. .+...|.+++|||||+++++....+. +
T Consensus 210 ~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~--~-~~~~~~~-~~~~~~~~~~~SpD~~~~~~~~~~~~---------~ 276 (719)
T 1z68_A 210 INIPYPKAGAKNPVVRIFIIDTTYPAYVGPQE--V-PVPAMIA-SSDYYFSWLTWVTDERVCLQWLKRVQ---------N 276 (719)
T ss_dssp EEEECCBTTSCCCEEEEEEEESSCHHHHCCEE--C-CCCHHHH-TSCEEEEEEEESSSSEEEEEEEESST---------T
T ss_pred eeecCCCCCCCCCeeEEEEEECCCCCccceeE--c-cCCccCC-CCcceEEEeEEeCCCeEEEEEecccc---------C
Confidence 278889887654310000 0 0001122 23446899999999988776443321 1
Q ss_pred CceeeEEE----ecCCcCcccceeccccceeeccCCCccccccc-----eEEEccCCCEEEE--EeCCCc--EEEEecCC
Q 003087 194 PCCISLWR----RCHNLELEQLYTTQIEGLYCEPKGHEVQLAHP-----KVLISPQGKFVAT--SDTNGC--LYIFEMDK 260 (849)
Q Consensus 194 ~~~I~lW~----~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~-----~vafSPDG~~LAs--~s~Dgt--v~LWd~~~ 260 (849)
...|.+|+ +.++. ...+.. .. ..+ |...|. .++|||||+.|+. ...+|. |.+|++.+
T Consensus 277 ~~~l~~~d~~~~~~~g~-~~~~~~-----~~--~~~--~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~ 346 (719)
T 1z68_A 277 VSVLSICDFREDWQTWD-CPKTQE-----HI--EES--RTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTV 346 (719)
T ss_dssp EEEEEEEEECSSSSSEE-CCGGGE-----EE--EEC--SSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCS
T ss_pred eEEEEEEcccCCCCCCc-eEEEEe-----cc--ccc--CCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCC
Confidence 12367777 44432 111110 00 012 445565 8999999997664 456664 55566655
Q ss_pred CcccccccccccccccccccccCCCCCCCCCCcEEEEEecCC-EEEEEEe-----CCcEEEEEecC
Q 003087 261 DNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDN-ILILARK-----SSIITMIDVLS 320 (849)
Q Consensus 261 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~-~la~a~~-----dgti~lwdl~~ 320 (849)
++ ...++ . +...+..+.|| |+ .|+.++. +++.+||.+..
T Consensus 347 ~~--~~~lt--------------~----~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 347 EN--AIQIT--------------S----GKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp TT--CEECS--------------C----SSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred Cc--eEecc--------------c----CceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence 42 12221 1 12346778888 65 5655554 48899999864
No 156
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.69 E-value=1.6e-15 Score=163.98 Aligned_cols=242 Identities=10% Similarity=0.080 Sum_probs=147.8
Q ss_pred EEEcCCCCeEE-EEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeC-CCcEEEEecCCcc--cee
Q 003087 16 LFISPRGERVA-VAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDD-THTVYFFKANGEE--ITR 90 (849)
Q Consensus 16 lafSPdG~~LA-sas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~-dgtIrlWd~~g~~--~~~ 90 (849)
..|+++++++. +++ +++|.+|+..++ +....... +.... .++|||||++|++++. +++|++||..+.. ...
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~--~~~~~~~~-~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~ 78 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTL--EILNQITL-GYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVA 78 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTC--CEEEEEEC-CCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCccc--ceeeeEEc-cCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEe
Confidence 46788888754 444 689999997643 33333332 23445 9999999997766655 8999999997444 333
Q ss_pred cccccccccccEEEEEecCCcccccccceeEEEEeCC-C--cEEEEEecCCCCcccccccccCCcceeccccCCceEEEE
Q 003087 91 FTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSD-G--FLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTD 167 (849)
Q Consensus 91 l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~D-g--~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~sva 167 (849)
+..+ ..++.+++|+|++.. +++...+ + .|.+|++.+++....+ . . .....+++
T Consensus 79 ~~~~----~~~~~~~~~s~dg~~-------l~~~~~~~~~~~i~v~d~~~~~~~~~~-----------~-~-~~~~~~~~ 134 (331)
T 3u4y_A 79 IQEG----QSSMADVDITPDDQF-------AVTVTGLNHPFNMQSYSFLKNKFISTI-----------P-I-PYDAVGIA 134 (331)
T ss_dssp EEEC----SSCCCCEEECTTSSE-------EEECCCSSSSCEEEEEETTTTEEEEEE-----------E-C-CTTEEEEE
T ss_pred cccC----CCCccceEECCCCCE-------EEEecCCCCcccEEEEECCCCCeEEEE-----------E-C-CCCccceE
Confidence 3221 123334889886542 2322333 2 8999999876543221 1 1 23479999
Q ss_pred EcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEE
Q 003087 168 YHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATS 247 (849)
Q Consensus 168 fsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~ 247 (849)
|+|||+.|++++.++ + ..|.+|++..... +.... ...+ . +......++|||||++|+.+
T Consensus 135 ~spdg~~l~~~~~~~----------~-~~i~~~~~~~~g~---~~~~~-~~~~--~----~~~~~~~~~~spdg~~l~v~ 193 (331)
T 3u4y_A 135 ISPNGNGLILIDRSS----------A-NTVRRFKIDADGV---LFDTG-QEFI--S----GGTRPFNITFTPDGNFAFVA 193 (331)
T ss_dssp ECTTSSCEEEEEETT----------T-TEEEEEEECTTCC---EEEEE-EEEE--C----SSSSEEEEEECTTSSEEEEE
T ss_pred ECCCCCEEEEEecCC----------C-ceEEEEEECCCCc---EeecC-Cccc--c----CCCCccceEECCCCCEEEEE
Confidence 999999777665542 1 1278999875321 11110 0111 1 22356799999999966554
Q ss_pred -eCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EEEE-EeCCcEEEEEecCCcc
Q 003087 248 -DTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LILA-RKSSIITMIDVLSGLK 323 (849)
Q Consensus 248 -s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~a-~~dgti~lwdl~~~~~ 323 (849)
..+++|++||+.+++. +..... +. ....+..++|+|||+ ++++ ..++.|.+||+.+++.
T Consensus 194 ~~~~~~v~v~d~~~~~~-~~~~~~-----------~~-----~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~ 255 (331)
T 3u4y_A 194 NLIGNSIGILETQNPEN-ITLLNA-----------VG-----TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTL 255 (331)
T ss_dssp ETTTTEEEEEECSSTTS-CEEEEE-----------EE-----CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEE
T ss_pred eCCCCeEEEEECCCCcc-cceeee-----------cc-----CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCce
Confidence 4689999999987642 110110 00 113457799999997 4444 3577899999998764
No 157
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.69 E-value=2.5e-15 Score=163.30 Aligned_cols=230 Identities=13% Similarity=0.073 Sum_probs=151.7
Q ss_pred cceEEEEEcCCCCeEEEEe--CCeEEEEecCCCCCcceeeeeecCCC--------CEEEEEECCCCCEEEEEe--CCCcE
Q 003087 11 KKQVSLFISPRGERVAVAA--VNQVTILQKDDDYQEPCGIFNCTGLG--------ASIYGAWSESHDVLGIVD--DTHTV 78 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas--~~~i~iw~~~~~~~~~~~~~~~~~~~--------~v~~vafSPDG~~LAs~~--~dgtI 78 (849)
..+..++|||||+++++++ +++|.+|+..++ +....+..++.. ....++|||||++|++++ .+++|
T Consensus 89 ~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i 166 (353)
T 3vgz_A 89 LKPFGATINNTTQTLWFGNTVNSAVTAIDAKTG--EVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVI 166 (353)
T ss_dssp SCCCSEEEETTTTEEEEEETTTTEEEEEETTTC--CEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEE
T ss_pred CCcceEEECCCCCEEEEEecCCCEEEEEeCCCC--eeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceE
Confidence 3467899999999777664 479999997643 333333321111 268899999999888776 48899
Q ss_pred EEEecC-CccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceecc
Q 003087 79 YFFKAN-GEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRR 157 (849)
Q Consensus 79 rlWd~~-g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~ 157 (849)
++||.. ++.+..+.... ..+.+++|+|++. .+++.+.+|.|.+||..+++...... ..+
T Consensus 167 ~~~d~~~~~~~~~~~~~~----~~~~~~~~s~dg~-------~l~~~~~~~~i~~~d~~~~~~~~~~~---------~~~ 226 (353)
T 3vgz_A 167 WVVDGGNIKLKTAIQNTG----KMSTGLALDSEGK-------RLYTTNADGELITIDTADNKILSRKK---------LLD 226 (353)
T ss_dssp EEEETTTTEEEEEECCCC----TTCCCCEEETTTT-------EEEEECTTSEEEEEETTTTEEEEEEE---------CCC
T ss_pred EEEcCCCCceEEEecCCC----CccceEEECCCCC-------EEEEEcCCCeEEEEECCCCeEEEEEE---------cCC
Confidence 999997 54444443111 2356778887654 25566789999999988765432211 100
Q ss_pred -ccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEE
Q 003087 158 -QFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVL 236 (849)
Q Consensus 158 -~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~va 236 (849)
.+...+.+++|+|||+.|++++.++ + .|.+|+..++. .+.. +.. + ....++
T Consensus 227 ~~~~~~~~~~~~s~dg~~l~~~~~~~----------~--~v~~~d~~~~~---~~~~------~~~--~-----~~~~~~ 278 (353)
T 3vgz_A 227 DGKEHFFINISLDTARQRAFITDSKA----------A--EVLVVDTRNGN---ILAK------VAA--P-----ESLAVL 278 (353)
T ss_dssp SSSCCCEEEEEEETTTTEEEEEESSS----------S--EEEEEETTTCC---EEEE------EEC--S-----SCCCEE
T ss_pred CCCCcccceEEECCCCCEEEEEeCCC----------C--EEEEEECCCCc---EEEE------EEc--C-----CCceEE
Confidence 1233588999999999887776553 1 48899986642 1111 110 1 124799
Q ss_pred EccCCCEEEEEe-CCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EEEEEeC
Q 003087 237 ISPQGKFVATSD-TNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LILARKS 310 (849)
Q Consensus 237 fSPDG~~LAs~s-~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~a~~d 310 (849)
|||||++|+.++ .+++|.+||+.+++. +..+.. ...+..++|+|||. +.++..+
T Consensus 279 ~s~dg~~l~v~~~~~~~v~~~d~~~~~~-~~~~~~-------------------~~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 279 FNPARNEAYVTHRQAGKVSVIDAKSYKV-VKTFDT-------------------PTHPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTTTEE-EEEEEC-------------------CSEEEEEEECTTSCEEEEEEEC
T ss_pred ECCCCCEEEEEECCCCeEEEEECCCCeE-EEEEec-------------------CCCCCeEEEcCCCCEEEEEEcc
Confidence 999999766555 699999999987743 233221 13468899999997 5566554
No 158
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.68 E-value=5.7e-16 Score=195.46 Aligned_cols=203 Identities=6% Similarity=-0.077 Sum_probs=146.9
Q ss_pred ceEEEEEc-CCCCeEEEEeCCeEEEEecCCCCCcceeeeeecCCC-CEEEEEECCCCCEEEEEeCCCcEE-EEecCCccc
Q 003087 12 KQVSLFIS-PRGERVAVAAVNQVTILQKDDDYQEPCGIFNCTGLG-ASIYGAWSESHDVLGIVDDTHTVY-FFKANGEEI 88 (849)
Q Consensus 12 ~v~slafS-PdG~~LAsas~~~i~iw~~~~~~~~~~~~~~~~~~~-~v~~vafSPDG~~LAs~~~dgtIr-lWd~~g~~~ 88 (849)
.+.+++|| |||++||+++++.|.+|+..++ .. ..... +.. .+..++|| ||+.|++++.++++. +|++.+...
T Consensus 297 ~v~~~~~S~pdG~~la~~~~~~i~~~~~~~~--~~-~~~~~-~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~ 371 (1045)
T 1k32_A 297 SKFAEDFSPLDGDLIAFVSRGQAFIQDVSGT--YV-LKVPE-PLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKA 371 (1045)
T ss_dssp GGGEEEEEECGGGCEEEEETTEEEEECTTSS--BE-EECSC-CSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCE
T ss_pred ccceeeecCCCCCEEEEEEcCEEEEEcCCCC--ce-EEccC-CCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCc
Confidence 58899999 9999999999999999986542 21 12221 234 67899999 999999999988898 999987665
Q ss_pred eecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEE
Q 003087 89 TRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDY 168 (849)
Q Consensus 89 ~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svaf 168 (849)
..+.. + ...+..++|+|++.. +++.+.++.|++||+.++...... . .+...|.+++|
T Consensus 372 ~~l~~-~---~~~~~~~~~SpDG~~-------la~~~~~~~v~~~d~~tg~~~~~~-----------~-~~~~~v~~~~~ 428 (1045)
T 1k32_A 372 EKFEE-N---LGNVFAMGVDRNGKF-------AVVANDRFEIMTVDLETGKPTVIE-----------R-SREAMITDFTI 428 (1045)
T ss_dssp EECCC-C---CCSEEEEEECTTSSE-------EEEEETTSEEEEEETTTCCEEEEE-----------E-CSSSCCCCEEE
T ss_pred eEecC-C---ccceeeeEECCCCCE-------EEEECCCCeEEEEECCCCceEEec-----------c-CCCCCccceEE
Confidence 66653 2 246889999997653 455688999999999876653322 1 23456899999
Q ss_pred cCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEEe
Q 003087 169 HPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSD 248 (849)
Q Consensus 169 sPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s 248 (849)
||||+.||+++.++... . ...+...|.+|++.++. ... ..+ |...+..++|||||++|++++
T Consensus 429 SpDG~~la~~~~~~~~~-~--~~~~~~~i~l~d~~~g~-~~~------------l~~--~~~~~~~~~~spdG~~l~~~s 490 (1045)
T 1k32_A 429 SDNSRFIAYGFPLKHGE-T--DGYVMQAIHVYDMEGRK-IFA------------ATT--ENSHDYAPAFDADSKNLYYLS 490 (1045)
T ss_dssp CTTSCEEEEEEEECSST-T--CSCCEEEEEEEETTTTE-EEE------------CSC--SSSBEEEEEECTTSCEEEEEE
T ss_pred CCCCCeEEEEecCcccc-c--cCCCCCeEEEEECCCCc-EEE------------eeC--CCcccCCceEcCCCCEEEEEe
Confidence 99999998887642000 0 00011258999987642 111 112 556788899999999999999
Q ss_pred CCCcEEEEecCC
Q 003087 249 TNGCLYIFEMDK 260 (849)
Q Consensus 249 ~Dgtv~LWd~~~ 260 (849)
.++..++|+...
T Consensus 491 ~~~~~~~~~~~~ 502 (1045)
T 1k32_A 491 YRSLDPSPDRVV 502 (1045)
T ss_dssp SCCCCCEECSSS
T ss_pred cccCCcCcchhc
Confidence 999988888653
No 159
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.62 E-value=5e-14 Score=153.92 Aligned_cols=259 Identities=7% Similarity=-0.023 Sum_probs=160.0
Q ss_pred cccceEEEEEcCCCCeEEEEeCC-------------------------eEEEEecCCCCCcceeeeeecCCCCEEEEEEC
Q 003087 9 KTKKQVSLFISPRGERVAVAAVN-------------------------QVTILQKDDDYQEPCGIFNCTGLGASIYGAWS 63 (849)
Q Consensus 9 ~~~~v~slafSPdG~~LAsas~~-------------------------~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafS 63 (849)
+.+.|.+|+|+|||+++++.+++ +|.+|+..++ .....+..........|+|+
T Consensus 22 ~l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g--~~~~~~~~~~~~~p~gia~d 99 (329)
T 3fvz_A 22 LPGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNA--EILQSSGKNLFYLPHGLSID 99 (329)
T ss_dssp CCSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTC--CEEEEECTTTCSSEEEEEEC
T ss_pred ecCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCC--eEEeccCCCccCCceEEEEC
Confidence 67899999999999999888754 6888886532 22222211113467899999
Q ss_pred CCCCEEEEEeCCCcEEEEecCCc--cceeccccc-----ccccccEEEEEecC-CcccccccceeEEEEe--CCCcEEEE
Q 003087 64 ESHDVLGIVDDTHTVYFFKANGE--EITRFTNKH-----LKVSLPIIGLIAQD-ETDVQRSCLCSFTVFT--SDGFLHQI 133 (849)
Q Consensus 64 PDG~~LAs~~~dgtIrlWd~~g~--~~~~l~~~~-----~~~~~~V~~l~fs~-~~~~~~s~~~~~~~~s--~Dg~v~lw 133 (849)
|||+++++...+++|++|+.+|+ .+..+.... ...-....+|+|+| ++. ++++. .++.|+.|
T Consensus 100 ~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~--------lyv~d~~~~~~I~~~ 171 (329)
T 3fvz_A 100 TDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGA--------VFVSDGYCNSRIVQF 171 (329)
T ss_dssp TTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCC--------EEEEECSSCCEEEEE
T ss_pred CCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCe--------EEEEeCCCCCeEEEE
Confidence 99999999999999999999987 444442110 01112467899987 443 33334 47888888
Q ss_pred EecCCCCcccccccccCCcceeccccCCceEEEEEcCC-CceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccce
Q 003087 134 EISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPE-LSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLY 212 (849)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPd-g~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~ 212 (849)
+. .+.....+...- .......++. ....+++|+|+ |+++++...++ .|++|+..++. .+.
T Consensus 172 ~~-~g~~~~~~~~~g-~~~~~~~~~~-~~p~gia~d~~~g~l~v~d~~~~-------------~I~~~~~~~G~---~~~ 232 (329)
T 3fvz_A 172 SP-SGKFVTQWGEES-SGSSPRPGQF-SVPHSLALVPHLDQLCVADRENG-------------RIQCFKTDTKE---FVR 232 (329)
T ss_dssp CT-TSCEEEEECEEC-CSSSCCTTEE-SCEEEEEEETTTTEEEEEETTTT-------------EEEEEETTTCC---EEE
T ss_pred cC-CCCEEEEeccCC-CCCCCCCccc-CCCcEEEEECCCCEEEEEECCCC-------------EEEEEECCCCc---EEE
Confidence 83 333322211000 0000000111 23799999999 66665543333 48999987432 111
Q ss_pred eccccceeeccCCCccccccceEEEcc------CCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCC
Q 003087 213 TTQIEGLYCEPKGHEVQLAHPKVLISP------QGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGR 286 (849)
Q Consensus 213 ~~~~~~~~~~~~g~~h~~~V~~vafSP------DG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~ 286 (849)
.+. ..+ +...++.++|+| +|+..++...+++|++|+..+++. +..+.. .
T Consensus 233 ------~~~-~~~--~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~-~~~~~~--------------~- 287 (329)
T 3fvz_A 233 ------EIK-HAS--FGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEI-IDVFKP--------------V- 287 (329)
T ss_dssp ------EEC-CTT--TTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCE-EEEECC--------------S-
T ss_pred ------EEe-ccc--cCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeE-EEEEcC--------------C-
Confidence 110 012 445788999999 444444344456999999987754 333321 0
Q ss_pred CCCCCCcEEEEEecCCEEEE-EEeCCcEEEEEecCC
Q 003087 287 TKPISDITDFAWWSDNILIL-ARKSSIITMIDVLSG 321 (849)
Q Consensus 287 ~~~~~~v~~vaws~D~~la~-a~~dgti~lwdl~~~ 321 (849)
..+...+.+|+++|||.+.+ ...++.|++|++.+.
T Consensus 288 ~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 288 RKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp SSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEEC
T ss_pred CCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCcc
Confidence 12345689999999997655 457889999998753
No 160
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.61 E-value=2.7e-13 Score=143.84 Aligned_cols=247 Identities=13% Similarity=0.113 Sum_probs=162.8
Q ss_pred cccccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeec-----CCCCEEEEEE-CCCCCEEEEEeC-CCcE
Q 003087 7 PRKTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCT-----GLGASIYGAW-SESHDVLGIVDD-THTV 78 (849)
Q Consensus 7 ~~~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~-----~~~~v~~vaf-SPDG~~LAs~~~-dgtI 78 (849)
+.+...+.+|+++|||+++++.+ ++.|.+|+... .....+... +......++| .++|+++++... ++.|
T Consensus 26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g---~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i 102 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEG---RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQI 102 (286)
T ss_dssp TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTS---CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEE
T ss_pred CCccCCCceEEECCCCCEEEEECCCCEEEEECCCC---cEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEE
Confidence 34557799999999999888765 57899998653 223223211 1235789999 689988888754 8999
Q ss_pred EEEecCCccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccc
Q 003087 79 YFFKANGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQ 158 (849)
Q Consensus 79 rlWd~~g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~ 158 (849)
++||.+|+.+..+...+ ...+.+++|.+++.. +++.+.++.|.+|+.. +.....+. ..++
T Consensus 103 ~~~d~~g~~~~~~~~~~---~~~~~~i~~~~~g~l-------~v~~~~~~~i~~~~~~-g~~~~~~~---------~~~~ 162 (286)
T 1q7f_A 103 QIYNQYGQFVRKFGATI---LQHPRGVTVDNKGRI-------IVVECKVMRVIIFDQN-GNVLHKFG---------CSKH 162 (286)
T ss_dssp EEECTTSCEEEEECTTT---CSCEEEEEECTTSCE-------EEEETTTTEEEEECTT-SCEEEEEE---------CTTT
T ss_pred EEECCCCcEEEEecCcc---CCCceEEEEeCCCCE-------EEEECCCCEEEEEcCC-CCEEEEeC---------CCCc
Confidence 99998888765553322 135678999875432 2222467889999853 22211111 0112
Q ss_pred cCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEc
Q 003087 159 FPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLIS 238 (849)
Q Consensus 159 ~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafS 238 (849)
...+.+++++|+|+++++.+.++ .|.+|+..+. .+.... ..+ +...+..|+|+
T Consensus 163 -~~~p~~i~~~~~g~l~v~~~~~~-------------~i~~~~~~g~----~~~~~~-------~~g--~~~~p~~i~~d 215 (286)
T 1q7f_A 163 -LEFPNGVVVNDKQEIFISDNRAH-------------CVKVFNYEGQ----YLRQIG-------GEG--ITNYPIGVGIN 215 (286)
T ss_dssp -CSSEEEEEECSSSEEEEEEGGGT-------------EEEEEETTCC----EEEEES-------CTT--TSCSEEEEEEC
T ss_pred -cCCcEEEEECCCCCEEEEECCCC-------------EEEEEcCCCC----EEEEEc-------cCC--ccCCCcEEEEC
Confidence 23589999999999776654443 3888986542 111100 011 23467789999
Q ss_pred cCCCEEEEEeCCC-cEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCEEEEEEeCCcEEEEE
Q 003087 239 PQGKFVATSDTNG-CLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNILILARKSSIITMID 317 (849)
Q Consensus 239 PDG~~LAs~s~Dg-tv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~la~a~~dgti~lwd 317 (849)
|||+++++...++ .|++|+..+. .+..+... .....+.+++|.|||.+.+++.+++|++|+
T Consensus 216 ~~G~l~v~~~~~~~~i~~~~~~g~--~~~~~~~~----------------~~~~~~~~i~~~~~g~l~vs~~~~~v~v~~ 277 (286)
T 1q7f_A 216 SNGEILIADNHNNFNLTIFTQDGQ--LISALESK----------------VKHAQCFDVALMDDGSVVLASKDYRLYIYR 277 (286)
T ss_dssp TTCCEEEEECSSSCEEEEECTTSC--EEEEEEES----------------SCCSCEEEEEEETTTEEEEEETTTEEEEEE
T ss_pred CCCCEEEEeCCCCEEEEEECCCCC--EEEEEccc----------------CCCCcceeEEECCCCcEEEECCCCeEEEEE
Confidence 9999999988886 9999997653 23343311 112347889999999988778899999999
Q ss_pred ecCC
Q 003087 318 VLSG 321 (849)
Q Consensus 318 l~~~ 321 (849)
+...
T Consensus 278 ~~~~ 281 (286)
T 1q7f_A 278 YVQL 281 (286)
T ss_dssp CSCC
T ss_pred cccc
Confidence 8653
No 161
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.60 E-value=1.2e-14 Score=170.91 Aligned_cols=194 Identities=9% Similarity=-0.003 Sum_probs=132.0
Q ss_pred CCEEEEEECCCCCEEEEEeC-CCcEEEEecCCccceecccccccccccEEEEEecCCcccccccceeEEEEe---CCCcE
Q 003087 55 GASIYGAWSESHDVLGIVDD-THTVYFFKANGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFT---SDGFL 130 (849)
Q Consensus 55 ~~v~~vafSPDG~~LAs~~~-dgtIrlWd~~g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s---~Dg~v 130 (849)
..|.+++|||||++||+++. ||+++||++.|....+++.++. ..|.+++|+||. . +++.+ .+...
T Consensus 22 ~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~---~~~~~~~~spd~-~-------l~~~~~~~g~~~~ 90 (582)
T 3o4h_A 22 VEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPI---NSVLDPHYGVGR-V-------ILVRDVSKGAEQH 90 (582)
T ss_dssp SCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCC---SEECEECTTCSE-E-------EEEEECSTTSCCE
T ss_pred cchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccc---cccccccCCCCe-E-------EEEeccCCCCcce
Confidence 46899999999999999887 9999999998777677765441 357788888872 2 22223 25667
Q ss_pred EEEEecC--CCCcccccccccCCcceeccccCCceEEEEEcCCCceE--EEEecCCCCccccCCCCCCceeeEEEecCCc
Q 003087 131 HQIEISQ--DPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLL--SVVSNTDTSSLTSSGNSGPCCISLWRRCHNL 206 (849)
Q Consensus 131 ~lw~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lL--as~g~d~t~~~~~~~~~G~~~I~lW~~~~~~ 206 (849)
++|.+.. .+.... +... .++...+|||||+.+ ++++.++ +.+|++.++.
T Consensus 91 ~l~~~~~~~~g~~~~-----------l~~~--~~~~~~~~s~dg~~~~~~s~~~~~--------------~~l~d~~~g~ 143 (582)
T 3o4h_A 91 ALFKVNTSRPGEEQR-----------LEAV--KPMRILSGVDTGEAVVFTGATEDR--------------VALYALDGGG 143 (582)
T ss_dssp EEEEEETTSTTCCEE-----------CTTS--CSBEEEEEEECSSCEEEEEECSSC--------------EEEEEEETTE
T ss_pred EEEEEeccCCCcccc-----------ccCC--CCceeeeeCCCCCeEEEEecCCCC--------------ceEEEccCCc
Confidence 8887765 332111 1111 134566888888643 3333332 4599987652
Q ss_pred CcccceeccccceeeccCCCccccccceEEEccCCCEEEEEeCC----CcEEEEecCCCccccccccccccccccccccc
Q 003087 207 ELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTN----GCLYIFEMDKDNFSLSKFACGERFDLQVADSL 282 (849)
Q Consensus 207 ~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~D----gtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l 282 (849)
...+.. +.. .+++|||||++||+++.+ ++|++||+.+++. ..+.
T Consensus 144 -~~~l~~--------------~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~--~~l~------------- 191 (582)
T 3o4h_A 144 -LRELAR--------------LPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGL--RVFD------------- 191 (582)
T ss_dssp -EEEEEE--------------ESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCC--EEEC-------------
T ss_pred -EEEeec--------------CCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCc--eEee-------------
Confidence 111111 112 799999999999998887 8899999987743 2322
Q ss_pred CCCCCCCCCCcEEEEEecCCE-EEEEEeCC--cEEEEEecCCcc
Q 003087 283 FDGRTKPISDITDFAWWSDNI-LILARKSS--IITMIDVLSGLK 323 (849)
Q Consensus 283 ~~~~~~~~~~v~~vaws~D~~-la~a~~dg--ti~lwdl~~~~~ 323 (849)
.+...+.+++|||||+ |+++..+| +|.+||+.+++.
T Consensus 192 -----~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~ 230 (582)
T 3o4h_A 192 -----SGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSV 230 (582)
T ss_dssp -----CSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCE
T ss_pred -----cCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcE
Confidence 1234578999999997 56666788 899999988763
No 162
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.59 E-value=9e-15 Score=161.71 Aligned_cols=253 Identities=11% Similarity=0.042 Sum_probs=140.7
Q ss_pred EEEcCCCCeEEEEeC--C--eEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCCccceec
Q 003087 16 LFISPRGERVAVAAV--N--QVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANGEEITRF 91 (849)
Q Consensus 16 lafSPdG~~LAsas~--~--~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~~~~~l 91 (849)
.+|||||++||.+++ + .|.+|+..++ ... ..+..+...+..++|||||+.||.++.+++|++||+.+.+...+
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g--~~~-~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~ 117 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQ--VAT-QLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVV 117 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTC--EEE-ECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEE
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCC--ceE-EeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceee
Confidence 789999999999974 3 3666776532 222 12211122233678999999999999999999999985443333
Q ss_pred ccccccccccEEEE--EecCCcccccccc---e------------eEEEEeCCCcEEEEEecCCCCcccccccccCCcce
Q 003087 92 TNKHLKVSLPIIGL--IAQDETDVQRSCL---C------------SFTVFTSDGFLHQIEISQDPSASISSASASSSGLT 154 (849)
Q Consensus 92 ~~~~~~~~~~V~~l--~fs~~~~~~~s~~---~------------~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~ 154 (849)
...+. ..+... .+++++....... . .+...+.++.|.+||+.++.....
T Consensus 118 ~~~~~---~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l----------- 183 (388)
T 3pe7_A 118 YQVPA---EWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVI----------- 183 (388)
T ss_dssp EECCT---TEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEE-----------
T ss_pred eechh---hcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEe-----------
Confidence 22221 112222 3355443221000 0 000013457788999887654222
Q ss_pred eccccCCceEEEEEcC-CCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccc-ccc
Q 003087 155 LRRQFPQNVICTDYHP-ELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQ-LAH 232 (849)
Q Consensus 155 l~~~~~~~V~svafsP-dg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~-~~V 232 (849)
. .+...+..++||| ||+.||.++.... ..+...|.+|+..+.. ...+.. + +. ..+
T Consensus 184 -~-~~~~~~~~~~~sp~dg~~l~~~~~~~~-------~~~~~~l~~~d~~~~~-~~~l~~-----------~--~~~~~~ 240 (388)
T 3pe7_A 184 -L-QENQWLGHPIYRPYDDSTVAFCHEGPH-------DLVDARMWLINEDGTN-MRKVKT-----------H--AEGESC 240 (388)
T ss_dssp -E-EESSCEEEEEEETTEEEEEEEEECSCT-------TTSSCSEEEEETTSCC-CEESCC-----------C--CTTEEE
T ss_pred -e-cCCccccccEECCCCCCEEEEEEecCC-------CCCcceEEEEeCCCCc-eEEeee-----------C--CCCccc
Confidence 1 2234589999999 9999988765420 0011124555544431 111111 1 11 246
Q ss_pred ceEEEccCCCEEEEEeCC-C----cEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EEE
Q 003087 233 PKVLISPQGKFVATSDTN-G----CLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LIL 306 (849)
Q Consensus 233 ~~vafSPDG~~LAs~s~D-g----tv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~ 306 (849)
..++|||||+.||..+.+ | .|.+||+.+++. ..+.......+ .. ..+..++|+|||+ |+.
T Consensus 241 ~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~--~~l~~~~~~~~-----~~-------~~~~~~~~spdg~~l~~ 306 (388)
T 3pe7_A 241 THEFWVPDGSALVYVSYLKGSPDRFIYSADPETLEN--RQLTSMPACSH-----LM-------SNYDGSLMVGDGSDAPV 306 (388)
T ss_dssp EEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCE--EEEEEECCEEE-----EE-------ECTTSSEEEEEECCC--
T ss_pred ccceECCCCCEEEEEecCCCCCcceEEEEecCCCce--EEEEcCCCcee-----ee-------ecCCCCeEccCCCccee
Confidence 788999999988776542 2 399999998743 12211000000 00 0011137999986 443
Q ss_pred E---------EeCCcEEEEEecCCc
Q 003087 307 A---------RKSSIITMIDVLSGL 322 (849)
Q Consensus 307 a---------~~dgti~lwdl~~~~ 322 (849)
+ ..++.|.+||+.+++
T Consensus 307 ~~~~~~~~~~~~~~~i~~~d~~~~~ 331 (388)
T 3pe7_A 307 DVQDDSGYKIENDPFLYVFNMKNGT 331 (388)
T ss_dssp ----------CCCCEEEEEETTTTE
T ss_pred EeeeccccccCCCCEEEEEeccCCc
Confidence 3 345589999998876
No 163
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.59 E-value=4.4e-13 Score=147.27 Aligned_cols=208 Identities=13% Similarity=0.136 Sum_probs=127.2
Q ss_pred ceEEEEEcCCCCeEEEEe--CCeEEEEecCCCCC--cceeeeeecC---------CCCEEEEEECCCCCEEEEEe-CCCc
Q 003087 12 KQVSLFISPRGERVAVAA--VNQVTILQKDDDYQ--EPCGIFNCTG---------LGASIYGAWSESHDVLGIVD-DTHT 77 (849)
Q Consensus 12 ~v~slafSPdG~~LAsas--~~~i~iw~~~~~~~--~~~~~~~~~~---------~~~v~~vafSPDG~~LAs~~-~dgt 77 (849)
.+..+++ ||++|++++ +++|.+|+...+.. .........+ .+.+.+++|||||++|++++ .+++
T Consensus 101 ~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~ 178 (361)
T 3scy_A 101 DPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQ 178 (361)
T ss_dssp CEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTE
T ss_pred CcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCE
Confidence 4566777 999998886 57899999753211 1111111111 23458899999999776555 5899
Q ss_pred EEEEecCCcc-------ceec---ccccccccccEEEEEecCCcccccccceeEEEEe-CCCcEEEEEecCCCCcccccc
Q 003087 78 VYFFKANGEE-------ITRF---TNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFT-SDGFLHQIEISQDPSASISSA 146 (849)
Q Consensus 78 IrlWd~~g~~-------~~~l---~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s-~Dg~v~lw~~~~~~~~~~~~~ 146 (849)
|++|++.... +... .............++|+|++.. +++.+ .++.|++|++.++.......
T Consensus 179 v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~-------l~v~~~~~~~v~v~~~~~g~~~~~~~- 250 (361)
T 3scy_A 179 IHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKF-------AYLINEIGGTVIAFRYADGMLDEIQT- 250 (361)
T ss_dssp EEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSE-------EEEEETTTCEEEEEEEETTEEEEEEE-
T ss_pred EEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCE-------EEEEcCCCCeEEEEEecCCceEEeEE-
Confidence 9999886321 2111 0000111234678999997642 33444 68999999998654321111
Q ss_pred cccCCcceeccccCCceEEEEEcCCCceEEEEecC-CCCccccCCCCCCceeeEEEecCCc-CcccceeccccceeeccC
Q 003087 147 SASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNT-DTSSLTSSGNSGPCCISLWRRCHNL-ELEQLYTTQIEGLYCEPK 224 (849)
Q Consensus 147 ~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d-~t~~~~~~~~~G~~~I~lW~~~~~~-~~~~l~~~~~~~~~~~~~ 224 (849)
+ .....+ .....+++|||||++|++++.+ . + .|.+|+++... .+..+.. +..
T Consensus 251 -~----~~~~~~-~~~~~~i~~spdg~~l~v~~~~~~----------~--~i~v~~~~~~~g~~~~~~~------~~~-- 304 (361)
T 3scy_A 251 -V----AADTVN-AQGSGDIHLSPDGKYLYASNRLKA----------D--GVAIFKVDETNGTLTKVGY------QLT-- 304 (361)
T ss_dssp -E----ESCSSC-CCCEEEEEECTTSSEEEEEECSSS----------C--EEEEEEECTTTCCEEEEEE------EEC--
T ss_pred -E----ecCCCC-CCCcccEEECCCCCEEEEECCCCC----------C--EEEEEEEcCCCCcEEEeeE------ecC--
Confidence 0 011111 2347899999999998776655 2 1 48999986321 1111111 111
Q ss_pred CCccccccceEEEccCCCEEEEEe-CCCcEEEEecC
Q 003087 225 GHEVQLAHPKVLISPQGKFVATSD-TNGCLYIFEMD 259 (849)
Q Consensus 225 g~~h~~~V~~vafSPDG~~LAs~s-~Dgtv~LWd~~ 259 (849)
+ ..+..++|||||++|++++ .+++|.+|+++
T Consensus 305 g----~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 305 G----IHPRNFIITPNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp S----SCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred C----CCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence 1 3567899999999998888 67999997665
No 164
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.58 E-value=4.8e-14 Score=168.16 Aligned_cols=204 Identities=12% Similarity=0.046 Sum_probs=123.1
Q ss_pred EEEEc--CCCCe-EEEEeCCeEEEEecCCC--C-Ccceeeeeec----CCCCEEEEEECCCCCEEEEEeCC---------
Q 003087 15 SLFIS--PRGER-VAVAAVNQVTILQKDDD--Y-QEPCGIFNCT----GLGASIYGAWSESHDVLGIVDDT--------- 75 (849)
Q Consensus 15 slafS--PdG~~-LAsas~~~i~iw~~~~~--~-~~~~~~~~~~----~~~~v~~vafSPDG~~LAs~~~d--------- 75 (849)
+.+|| |||++ ||.+++...+||..+.+ . +. ...++.. +...+..++|||||+.||+++.+
T Consensus 81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~ 159 (662)
T 3azo_A 81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDV 159 (662)
T ss_dssp CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCE
T ss_pred cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCc
Confidence 45454 99999 99887644445543321 1 12 1222221 13356899999999999999877
Q ss_pred -CcEEEEecCC------ccceecc-cccccccccEEEEEecCCcccccccceeEEEEeCC--------CcEEEEEec-CC
Q 003087 76 -HTVYFFKANG------EEITRFT-NKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSD--------GFLHQIEIS-QD 138 (849)
Q Consensus 76 -gtIrlWd~~g------~~~~~l~-~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~D--------g~v~lw~~~-~~ 138 (849)
.+|++||+.| .....+. .++ ..+.+++|+||+.. ++..+.+ ..|.+|++. ++
T Consensus 160 ~~~i~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~SpDG~~-------la~~~~~~~~~~~~~~~i~~~d~~~~g 228 (662)
T 3azo_A 160 RRFLAAVPLDGSAAADRSAVRELSDDAH----RFVTGPRLSPDGRQ-------AVWLAWDHPRMPWEGTELKTARVTEDG 228 (662)
T ss_dssp EEEEEEEETTSTTTTCGGGSEESSCSCS----SEECCCEECTTSSE-------EEEEEECTTCCTTTCEEEEEEEECTTS
T ss_pred eeEEEEEECCCCccccCCceeEEEecCC----CcccCceECCCCCE-------EEEEECCCCCCCCCCcEEEEEEECCCC
Confidence 5899999987 6666665 433 34667889997753 2222333 479999998 44
Q ss_pred CCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEec--CCcCcccceeccc
Q 003087 139 PSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRC--HNLELEQLYTTQI 216 (849)
Q Consensus 139 ~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~--~~~~~~~l~~~~~ 216 (849)
..... ..+..++...+.+++|||||+++++++.+++ .++|.++ ++. ...+.....
T Consensus 229 ~~~~~---------~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~-------------~~l~~~~~~~~~-~~~l~~~~~ 285 (662)
T 3azo_A 229 RFADT---------RTLLGGPEEAIAQAEWAPDGSLIVATDRTGW-------------WNLHRVDPATGA-ATQLCRREE 285 (662)
T ss_dssp CEEEE---------EEEEEETTBCEEEEEECTTSCEEEEECTTSS-------------CEEEEECTTTCC-EEESSCCSS
T ss_pred ccccc---------EEeCCCCCceEcceEECCCCeEEEEECCCCC-------------eEEEEEECCCCc-eeecccccc
Confidence 21111 1222233456999999999997766555542 3455443 321 112211100
Q ss_pred cceeeccCCCccccccceEEEccCCCEEEEEeCCCcEEEEecC
Q 003087 217 EGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMD 259 (849)
Q Consensus 217 ~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~ 259 (849)
-...+. -...+..++|||||+++++++. |+++||.++
T Consensus 286 --~~~~p~---w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d 322 (662)
T 3azo_A 286 --EFAGPL---WTPGMRWFAPLANGLIAVVHGK-GAAVLGILD 322 (662)
T ss_dssp --BSSCCC---CSTTCCSEEECTTSCEEEEEBS-SSCEEEEEE
T ss_pred --cccCcc---ccccCceEeEeCCCEEEEEEEc-CccEEEEEE
Confidence 000000 0112568999999999999999 999999554
No 165
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.57 E-value=2.8e-14 Score=173.29 Aligned_cols=161 Identities=16% Similarity=0.157 Sum_probs=100.0
Q ss_pred CCEEEEEECCCCCEEEEEeCCCcEEEEecC-Cccceeccccccc-ccccEEEEEecCCcccccccceeEEEEeCC-----
Q 003087 55 GASIYGAWSESHDVLGIVDDTHTVYFFKAN-GEEITRFTNKHLK-VSLPIIGLIAQDETDVQRSCLCSFTVFTSD----- 127 (849)
Q Consensus 55 ~~v~~vafSPDG~~LAs~~~dgtIrlWd~~-g~~~~~l~~~~~~-~~~~V~~l~fs~~~~~~~s~~~~~~~~s~D----- 127 (849)
+...+++|||||++|+++ ||+|++||+. |+....+..+... ......+++||||+... +..+.+
T Consensus 17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l-------~~~~~~~~~~r 87 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFI-------LLEYNYVKQWR 87 (740)
T ss_dssp CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEE-------EEEEEEEECSS
T ss_pred ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEE-------EEEECCeeeEE
Confidence 345689999999999997 8999999997 4443333333221 11123457889977532 222332
Q ss_pred ----CcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEec
Q 003087 128 ----GFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRC 203 (849)
Q Consensus 128 ----g~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~ 203 (849)
|.+.+||+.++..... . .++..+..++|||||+.||.+... .|.+|+..
T Consensus 88 ~~~~~~~~~~d~~~~~~~~l------------~-~~~~~~~~~~~SPdG~~la~~~~~--------------~i~~~~~~ 140 (740)
T 4a5s_A 88 HSYTASYDIYDLNKRQLITE------------E-RIPNNTQWVTWSPVGHKLAYVWNN--------------DIYVKIEP 140 (740)
T ss_dssp SCEEEEEEEEETTTTEECCS------------S-CCCTTEEEEEECSSTTCEEEEETT--------------EEEEESST
T ss_pred EccceEEEEEECCCCcEEEc------------c-cCCCcceeeEECCCCCEEEEEECC--------------eEEEEECC
Confidence 6778999988765322 2 234469999999999999987543 28889887
Q ss_pred CCcCcccce-eccccceeeccCCCcccccc---------ceEEEccCCCEEEEEeCCCc-EEEEe
Q 003087 204 HNLELEQLY-TTQIEGLYCEPKGHEVQLAH---------PKVLISPQGKFVATSDTNGC-LYIFE 257 (849)
Q Consensus 204 ~~~~~~~l~-~~~~~~~~~~~~g~~h~~~V---------~~vafSPDG~~LAs~s~Dgt-v~LWd 257 (849)
++.. .++. .......+ .| +.++| ..++|||||+.||.++.|.+ +++|+
T Consensus 141 ~~~~-~~lt~~g~~~~~~---~g--~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~ 199 (740)
T 4a5s_A 141 NLPS-YRITWTGKEDIIY---NG--ITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIE 199 (740)
T ss_dssp TSCC-EECCSCCBTTTEE---ES--BCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEE
T ss_pred CCce-EEEcCCCCcccee---cC--cccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEE
Confidence 6531 1221 11110011 12 22223 45999999999999876544 44443
No 166
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.55 E-value=5.1e-14 Score=155.42 Aligned_cols=249 Identities=10% Similarity=0.025 Sum_probs=144.0
Q ss_pred eEEEEEcCCCCeEEEEeC--C--eEEEEecCCCCCcceeeeeecCCCCE-EEEEECCCCCEEEEEeCCCcEEEEecCCcc
Q 003087 13 QVSLFISPRGERVAVAAV--N--QVTILQKDDDYQEPCGIFNCTGLGAS-IYGAWSESHDVLGIVDDTHTVYFFKANGEE 87 (849)
Q Consensus 13 v~slafSPdG~~LAsas~--~--~i~iw~~~~~~~~~~~~~~~~~~~~v-~~vafSPDG~~LAs~~~dgtIrlWd~~g~~ 87 (849)
+.+++|||||++||.+++ + .|.+|+..++ ... .+.. +.... ..++|||||+.||.++.+++|++||+.+..
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~--~~~-~l~~-~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~ 113 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQ--QAV-QLTE-GKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLE 113 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTT--EEE-ECCC-SSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCC
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCC--cEE-Eeec-CCCCccccceECCCCCEEEEEEcCCcEEEEECCCCC
Confidence 677899999999998853 2 6777776542 211 1221 22222 237899999999999999999999998655
Q ss_pred ceecccccccccccEEEEEe----------------cCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCC
Q 003087 88 ITRFTNKHLKVSLPIIGLIA----------------QDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSS 151 (849)
Q Consensus 88 ~~~l~~~~~~~~~~V~~l~f----------------s~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~ 151 (849)
...+...+......-..++| +|++....... ......++.|.+|++.++.....
T Consensus 114 ~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~--~~~~~~~~~l~~~d~~~g~~~~~-------- 183 (396)
T 3c5m_A 114 EQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAE--FYHTNPTCRLIKVDIETGELEVI-------- 183 (396)
T ss_dssp EEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHH--HHHTCCCEEEEEEETTTCCEEEE--------
T ss_pred cEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeee--eccCCCcceEEEEECCCCcEEee--------
Confidence 44443322111111112433 33222110000 00003456788898876554222
Q ss_pred cceeccccCCceEEEEEcC-CCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCcccc
Q 003087 152 GLTLRRQFPQNVICTDYHP-ELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQL 230 (849)
Q Consensus 152 ~~~l~~~~~~~V~svafsP-dg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~ 230 (849)
. .....+..++||| ||+.|+.++.+.. ......|.+|++.++. ...+.. .. ...
T Consensus 184 ----~-~~~~~~~~~~~sp~dg~~l~~~~~~~~-------~~~~~~l~~~d~~~~~-~~~l~~---------~~---~~~ 238 (396)
T 3c5m_A 184 ----H-QDTAWLGHPIYRPFDDSTVGFCHEGPH-------DLVDARMWLVNEDGSN-VRKIKE---------HA---EGE 238 (396)
T ss_dssp ----E-EESSCEEEEEEETTEEEEEEEEECSCS-------SSCSCCCEEEETTSCC-CEESSC---------CC---TTE
T ss_pred ----c-cCCcccccceECCCCCCEEEEEecCCC-------CCCCceEEEEECCCCc-eeEeec---------cC---CCc
Confidence 1 1234589999999 8998877764321 0000136666665431 111110 00 012
Q ss_pred ccceEEEccCCCEEEEEeCC-----CcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEec-CCEE
Q 003087 231 AHPKVLISPQGKFVATSDTN-----GCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWS-DNIL 304 (849)
Q Consensus 231 ~V~~vafSPDG~~LAs~s~D-----gtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~-D~~l 304 (849)
.+..++|||||+.||.++.+ +.|.+||+.+++. ..... . .... ++|+| ||++
T Consensus 239 ~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~--~~l~~------------------~-~~~~-~~~s~~dg~~ 296 (396)
T 3c5m_A 239 SCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLEN--EEVMV------------------M-PPCS-HLMSNFDGSL 296 (396)
T ss_dssp EEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCE--EEEEE------------------C-CSEE-EEEECSSSSE
T ss_pred cccceEECCCCCEEEEEecCCCCccceEEEEECCCCCe--EEeee------------------C-CCCC-CCccCCCCce
Confidence 56789999999998888665 5599999987632 12110 0 1122 88999 9975
Q ss_pred EEE-E----------------eCCcEEEEEecCCc
Q 003087 305 ILA-R----------------KSSIITMIDVLSGL 322 (849)
Q Consensus 305 a~a-~----------------~dgti~lwdl~~~~ 322 (849)
++. + .++.|.+||+.+++
T Consensus 297 l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~ 331 (396)
T 3c5m_A 297 MVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKS 331 (396)
T ss_dssp EEEEECCC----------CCCCCCEEEEEETTTTB
T ss_pred EEEecCCcceeeccccccccCCCCcEEEEecccCc
Confidence 443 2 23689999998775
No 167
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.55 E-value=2.5e-13 Score=161.98 Aligned_cols=257 Identities=11% Similarity=0.030 Sum_probs=153.6
Q ss_pred ccceEEEEEcCCCCeEEEE--e-CCeEEEEecCCCCCcceeeeeecCCCCEE---------EEEEC--CCCCE-EEEEeC
Q 003087 10 TKKQVSLFISPRGERVAVA--A-VNQVTILQKDDDYQEPCGIFNCTGLGASI---------YGAWS--ESHDV-LGIVDD 74 (849)
Q Consensus 10 ~~~v~slafSPdG~~LAsa--s-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~---------~vafS--PDG~~-LAs~~~ 74 (849)
-..|.+++||||+.++++. + +++..||....+ +. ...++.+ ...+. ..+|| |||+. ||.++.
T Consensus 23 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~-~~-~~~l~~~-~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~ 99 (662)
T 3azo_A 23 SGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRAD-GA-EESALPA-PWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHF 99 (662)
T ss_dssp CSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTT-SC-EEESSCT-TCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBT
T ss_pred CCccceeEEcCCeEEEEecCcccCCcEEEEEECCC-CC-cceeCCC-CccccccccccCCccceeeeecCCCeEEEEEEC
Confidence 3679999999988777777 3 467889975322 22 2222221 22333 45565 99999 887664
Q ss_pred -CCcEEEEecC--C-ccceeccccccc-ccccEEEEEecCCcccccccceeEEEEeCC----------CcEEEEEecC--
Q 003087 75 -THTVYFFKAN--G-EEITRFTNKHLK-VSLPIIGLIAQDETDVQRSCLCSFTVFTSD----------GFLHQIEISQ-- 137 (849)
Q Consensus 75 -dgtIrlWd~~--g-~~~~~l~~~~~~-~~~~V~~l~fs~~~~~~~s~~~~~~~~s~D----------g~v~lw~~~~-- 137 (849)
+..|++|++. | .....+...... ....+.+++|+||+.. ++..+.| .+|.+|++.+
T Consensus 100 ~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~-------l~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 172 (662)
T 3azo_A 100 GDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGE-------VWCMAEEFTGEGPSDVRRFLAAVPLDGSA 172 (662)
T ss_dssp TTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTE-------EEEEEEEECSSSTTCEEEEEEEEETTSTT
T ss_pred CCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCE-------EEEEEecccCCCCCCceeEEEEEECCCCc
Confidence 6678888877 4 555555542100 1235778999997753 3333444 5788999876
Q ss_pred ----CCCcccccccccCCcceec-cccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecC-Cc--Ccc
Q 003087 138 ----DPSASISSASASSSGLTLR-RQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCH-NL--ELE 209 (849)
Q Consensus 138 ----~~~~~~~~~~~~~~~~~l~-~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~-~~--~~~ 209 (849)
+.... +. .+ ...+.+++|||||+.||.++.+++...| +...|.+|++.+ +. ...
T Consensus 173 ~~~~~~~~~------------l~~~~-~~~~~~~~~SpDG~~la~~~~~~~~~~~-----~~~~i~~~d~~~~g~~~~~~ 234 (662)
T 3azo_A 173 AADRSAVRE------------LSDDA-HRFVTGPRLSPDGRQAVWLAWDHPRMPW-----EGTELKTARVTEDGRFADTR 234 (662)
T ss_dssp TTCGGGSEE------------SSCSC-SSEECCCEECTTSSEEEEEEECTTCCTT-----TCEEEEEEEECTTSCEEEEE
T ss_pred cccCCceeE------------EEecC-CCcccCceECCCCCEEEEEECCCCCCCC-----CCcEEEEEEECCCCcccccE
Confidence 33221 11 12 2458889999999999988866421111 112588999873 31 111
Q ss_pred cceeccccceeeccCCCccccccceEEEccCCCEEEEEeCCCcEEE--EecCCCcccccccccccccccccccccCCCCC
Q 003087 210 QLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYI--FEMDKDNFSLSKFACGERFDLQVADSLFDGRT 287 (849)
Q Consensus 210 ~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~L--Wd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~ 287 (849)
.+.. + |...+..++|||||+++++++.+|+.+| |++.+++. ..+.... ... ..|
T Consensus 235 ~l~~-----------~--~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~--~~l~~~~-~~~-----~~p--- 290 (662)
T 3azo_A 235 TLLG-----------G--PEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAA--TQLCRRE-EEF-----AGP--- 290 (662)
T ss_dssp EEEE-----------E--TTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCE--EESSCCS-SBS-----SCC---
T ss_pred EeCC-----------C--CCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCce--eeccccc-ccc-----cCc---
Confidence 1111 1 3467889999999999999999995555 55544422 2222110 000 000
Q ss_pred CCCCCcEEEEEecCCEEE-EEEeCCcEEEEEec
Q 003087 288 KPISDITDFAWWSDNILI-LARKSSIITMIDVL 319 (849)
Q Consensus 288 ~~~~~v~~vaws~D~~la-~a~~dgti~lwdl~ 319 (849)
.....+.+++|+||+.++ +++. |+++||.+.
T Consensus 291 ~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d 322 (662)
T 3azo_A 291 LWTPGMRWFAPLANGLIAVVHGK-GAAVLGILD 322 (662)
T ss_dssp CCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEE
T ss_pred cccccCceEeEeCCCEEEEEEEc-CccEEEEEE
Confidence 111224678999988755 5566 999999543
No 168
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.54 E-value=1.1e-13 Score=148.72 Aligned_cols=205 Identities=12% Similarity=0.069 Sum_probs=131.7
Q ss_pred ceEEEEEcCCCCeEEEEe-------------CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcE
Q 003087 12 KQVSLFISPRGERVAVAA-------------VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTV 78 (849)
Q Consensus 12 ~v~slafSPdG~~LAsas-------------~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtI 78 (849)
.+..++|||||++|++++ ++.|.+|+..+. .....+. ....+..++|||||++|+++ ++.|
T Consensus 83 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~--~~~~~~~--~~~~~~~~~~s~dg~~l~~~--~~~i 156 (337)
T 1pby_B 83 SLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETL--SRRKAFE--APRQITMLAWARDGSKLYGL--GRDL 156 (337)
T ss_dssp CTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTT--EEEEEEE--CCSSCCCEEECTTSSCEEEE--SSSE
T ss_pred cccceEECCCCCEEEEEecccccccccccccCceEEEEECCCC--cEEEEEe--CCCCcceeEECCCCCEEEEe--CCeE
Confidence 567899999999999884 589999997642 3333332 23456789999999999988 6899
Q ss_pred EEEecC-CccceecccccccccccEEEEEecCCccccccc---ceeE---E-EEeCCC----------cEEEEEecCCCC
Q 003087 79 YFFKAN-GEEITRFTNKHLKVSLPIIGLIAQDETDVQRSC---LCSF---T-VFTSDG----------FLHQIEISQDPS 140 (849)
Q Consensus 79 rlWd~~-g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~---~~~~---~-~~s~Dg----------~v~lw~~~~~~~ 140 (849)
++||+. |+.+..+..+... . .+.|+|++...+.. ...+ + ....++ .|.+||+.+++.
T Consensus 157 ~~~d~~~~~~~~~~~~~~~~--~---~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 231 (337)
T 1pby_B 157 HVMDPEAGTLVEDKPIQSWE--A---ETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEM 231 (337)
T ss_dssp EEEETTTTEEEEEECSTTTT--T---TTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCE
T ss_pred EEEECCCCcEeeeeeccccC--C---CceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCc
Confidence 999997 4444444322211 1 12566654322211 0000 0 111111 578888877654
Q ss_pred cccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceecccccee
Q 003087 141 ASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLY 220 (849)
Q Consensus 141 ~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~ 220 (849)
. .. .+. .+...+.+++|+|||+.++++ ++ .|.+|++.+.. .+. .+
T Consensus 232 ~-~~---------~~~-~~~~~~~~~~~s~dg~~l~~~--~~-------------~v~~~d~~~~~---~~~------~~ 276 (337)
T 1pby_B 232 A-MR---------EVR-IMDVFYFSTAVNPAKTRAFGA--YN-------------VLESFDLEKNA---SIK------RV 276 (337)
T ss_dssp E-EE---------EEE-ECSSCEEEEEECTTSSEEEEE--ES-------------EEEEEETTTTE---EEE------EE
T ss_pred e-Ee---------ecC-CCCCceeeEEECCCCCEEEEe--CC-------------eEEEEECCCCc---Ccc------ee
Confidence 3 11 122 223458899999999999887 33 38999986642 111 11
Q ss_pred eccCCCccccccceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccc
Q 003087 221 CEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFA 269 (849)
Q Consensus 221 ~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~ 269 (849)
. ....+.+++|||||++|++++.++.|++||+.+++. +..++
T Consensus 277 ~------~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~-~~~~~ 318 (337)
T 1pby_B 277 P------LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEK-KGQVD 318 (337)
T ss_dssp E------CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCE-EEEEE
T ss_pred c------CCCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcE-EEEEE
Confidence 1 113577999999999999999999999999998754 44443
No 169
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.54 E-value=1.3e-13 Score=152.41 Aligned_cols=255 Identities=11% Similarity=0.016 Sum_probs=144.4
Q ss_pred eEEEEEcCCCCeEEEEeC-CeEEEEecCCCCCcceeeeeecCCCCEEEE--EECCCCCEEEEE-----------------
Q 003087 13 QVSLFISPRGERVAVAAV-NQVTILQKDDDYQEPCGIFNCTGLGASIYG--AWSESHDVLGIV----------------- 72 (849)
Q Consensus 13 v~slafSPdG~~LAsas~-~~i~iw~~~~~~~~~~~~~~~~~~~~v~~v--afSPDG~~LAs~----------------- 72 (849)
+.+++|||||++||.++. +.|.+|+..++. ....... ....+... .+||||++|+..
T Consensus 83 ~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~--~~~~~~~-~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~ 159 (388)
T 3pe7_A 83 TFGGFLSPDDDALFYVKDGRNLMRVDLATLE--ENVVYQV-PAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFH 159 (388)
T ss_dssp SSSCEECTTSSEEEEEETTTEEEEEETTTCC--EEEEEEC-CTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHH
T ss_pred ccceEEcCCCCEEEEEeCCCeEEEEECCCCc--ceeeeec-hhhcccccceeECCCCCeeccccccCcccccccccchhh
Confidence 346789999999999984 689999977532 2222221 12233333 459999999853
Q ss_pred -----eCCCcEEEEecCCccceecccccccccccEEEEEecC-CcccccccceeEEEEeC------CCcEEEEEecCCCC
Q 003087 73 -----DDTHTVYFFKANGEEITRFTNKHLKVSLPIIGLIAQD-ETDVQRSCLCSFTVFTS------DGFLHQIEISQDPS 140 (849)
Q Consensus 73 -----~~dgtIrlWd~~g~~~~~l~~~~~~~~~~V~~l~fs~-~~~~~~s~~~~~~~~s~------Dg~v~lw~~~~~~~ 140 (849)
+.++.|++||+.+.+...+..+. ..+..+.|+| ++... +..+. +..|.++++..+..
T Consensus 160 ~~~~~~~~~~l~~~d~~~g~~~~l~~~~----~~~~~~~~sp~dg~~l-------~~~~~~~~~~~~~~l~~~d~~~~~~ 228 (388)
T 3pe7_A 160 EFYFTKPCCRLMRVDLKTGESTVILQEN----QWLGHPIYRPYDDSTV-------AFCHEGPHDLVDARMWLINEDGTNM 228 (388)
T ss_dssp HHGGGCCCEEEEEEETTTCCEEEEEEES----SCEEEEEEETTEEEEE-------EEEECSCTTTSSCSEEEEETTSCCC
T ss_pred hhhccCCcceEEEEECCCCceEEeecCC----ccccccEECCCCCCEE-------EEEEecCCCCCcceEEEEeCCCCce
Confidence 24478999999755555554332 3577899998 76432 22222 23566666544332
Q ss_pred cccccccccCCcceeccccC-CceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccce
Q 003087 141 ASISSASASSSGLTLRRQFP-QNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGL 219 (849)
Q Consensus 141 ~~~~~~~~~~~~~~l~~~~~-~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~ 219 (849)
.. +..+.. ..+..++|||||+.||.++.... . ....|.+|++.++. ...+.... +.
T Consensus 229 ~~------------l~~~~~~~~~~~~~~spdg~~l~~~~~~~~-------~-~~~~l~~~d~~~g~-~~~l~~~~--~~ 285 (388)
T 3pe7_A 229 RK------------VKTHAEGESCTHEFWVPDGSALVYVSYLKG-------S-PDRFIYSADPETLE-NRQLTSMP--AC 285 (388)
T ss_dssp EE------------SCCCCTTEEEEEEEECTTSSCEEEEEEETT-------C-CCEEEEEECTTTCC-EEEEEEEC--CE
T ss_pred EE------------eeeCCCCcccccceECCCCCEEEEEecCCC-------C-CcceEEEEecCCCc-eEEEEcCC--Cc
Confidence 21 111221 24788999999998877665430 0 11137888887652 11121110 10
Q ss_pred eeccCCCccc-cccceEEEccCCCEEEEE---------eCCCcEEEEecCCCcccccccccccccccccccccCCCCCCC
Q 003087 220 YCEPKGHEVQ-LAHPKVLISPQGKFVATS---------DTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKP 289 (849)
Q Consensus 220 ~~~~~g~~h~-~~V~~vafSPDG~~LAs~---------s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~ 289 (849)
. |. .....++|||||+.||.. +.++.|.+||+.+++. ..+..+.. ....+.. +.
T Consensus 286 ~-------~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~--~~l~~~~~----~~~~~~~---~~ 349 (388)
T 3pe7_A 286 S-------HLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ--HRVARHDT----SWKVFEG---DR 349 (388)
T ss_dssp E-------EEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE--EEEEECCC----CCCCBTT---BS
T ss_pred e-------eeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce--EEeccccC----ccccccc---cc
Confidence 0 10 012345899999999864 5567999999998632 23321110 0000000 00
Q ss_pred CCCcEEEEEecCCE-EEEEE-eCCcEEEEEecC
Q 003087 290 ISDITDFAWWSDNI-LILAR-KSSIITMIDVLS 320 (849)
Q Consensus 290 ~~~v~~vaws~D~~-la~a~-~dgti~lwdl~~ 320 (849)
...+.+++|+|||+ |+.++ .+|...||.+.-
T Consensus 350 ~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l 382 (388)
T 3pe7_A 350 QVTHPHPSFTPDDKQILFTSDVHGKPALYLATL 382 (388)
T ss_dssp STTCCCCEECTTSSEEEEEECTTSSCEEEEEEC
T ss_pred ccCCCCccCCCCCCEEEEEecCCCceeEEEEEC
Confidence 11356789999995 55444 678777877653
No 170
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.53 E-value=2.4e-13 Score=150.49 Aligned_cols=219 Identities=8% Similarity=-0.033 Sum_probs=131.0
Q ss_pred eEEEEEcCCCCe--EEEE--------------eCCeEEEEecCCCCCcceeeeee---cCCCCEEEEEECCCCCEEEEEe
Q 003087 13 QVSLFISPRGER--VAVA--------------AVNQVTILQKDDDYQEPCGIFNC---TGLGASIYGAWSESHDVLGIVD 73 (849)
Q Consensus 13 v~slafSPdG~~--LAsa--------------s~~~i~iw~~~~~~~~~~~~~~~---~~~~~v~~vafSPDG~~LAs~~ 73 (849)
+..++|||||++ ++++ .++++.+|+...+ +........ .+...+..++|||||++|++++
T Consensus 85 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 163 (365)
T 1jof_A 85 PRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSET-GKLEKNVQNYEYQENTGIHGMVFDPTETYLYSAD 163 (365)
T ss_dssp GGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTT-CCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEE
T ss_pred CccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCC-CcCcceEeeEEeCCCCcceEEEECCCCCEEEEEc
Confidence 456899999994 5555 3578999987532 222222221 1245789999999999998776
Q ss_pred C-CCcEEEEecC-Cccceeccccccc-ccccEEEEEecCCcccccccceeEEEEe-CCCcEEEEEecC--CCCcc---cc
Q 003087 74 D-THTVYFFKAN-GEEITRFTNKHLK-VSLPIIGLIAQDETDVQRSCLCSFTVFT-SDGFLHQIEISQ--DPSAS---IS 144 (849)
Q Consensus 74 ~-dgtIrlWd~~-g~~~~~l~~~~~~-~~~~V~~l~fs~~~~~~~s~~~~~~~~s-~Dg~v~lw~~~~--~~~~~---~~ 144 (849)
. +++|++|++. +..+..+...... ....+..++|+|++.. +++.+ .+++|++|++.. +.... ..
T Consensus 164 ~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~-------l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~ 236 (365)
T 1jof_A 164 LTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNY-------LYALMEAGNRICEYVIDPATHMPVYTHHSF 236 (365)
T ss_dssp TTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSE-------EEEEETTTTEEEEEEECTTTCCEEEEEEEE
T ss_pred CCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCE-------EEEEECCCCeEEEEEEeCCCCcEEEccceE
Confidence 4 6899999996 3332221110000 0134788999997643 33334 478999998763 33210 00
Q ss_pred cccccCCcceeccccCC------ceEEEE-EcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceecccc
Q 003087 145 SASASSSGLTLRRQFPQ------NVICTD-YHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIE 217 (849)
Q Consensus 145 ~~~~~~~~~~l~~~~~~------~V~sva-fsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~ 217 (849)
. .+ ...+.++ .. .+.+++ |||||+.|++++..... ...| .|++|+++....+..+..
T Consensus 237 ~-~~---~~~~~g~-~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~-----~~~~--~i~v~~~~~~g~~~~~~~---- 300 (365)
T 1jof_A 237 P-LI---PPGIPDR-DPETGKGLYRADVCALTFSGKYMFASSRANKF-----ELQG--YIAGFKLRDCGSIEKQLF---- 300 (365)
T ss_dssp E-SS---CTTCCCB-CTTTSSBSEEEEEEEECTTSSEEEEEEEESST-----TSCC--EEEEEEECTTSCEEEEEE----
T ss_pred E-cC---CCCcCCc-ccccccccccccEEEECCCCCEEEEECCCCCC-----CCCC--eEEEEEECCCCCEEEeee----
Confidence 0 00 0001111 11 488999 99999998876543200 0011 389999863211111100
Q ss_pred ceeeccCCCccccccceEEEcc---CCCEEEEEeCC-CcEEEEecCCC
Q 003087 218 GLYCEPKGHEVQLAHPKVLISP---QGKFVATSDTN-GCLYIFEMDKD 261 (849)
Q Consensus 218 ~~~~~~~g~~h~~~V~~vafSP---DG~~LAs~s~D-gtv~LWd~~~~ 261 (849)
.+. . +...+..++||| ||++|++++.+ ++|++|+++..
T Consensus 301 -~~~---~--~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 301 -LSP---T--PTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp -EEE---C--SSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred -eee---c--CCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 010 1 223567899999 89999999875 99999999865
No 171
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.52 E-value=1.6e-13 Score=148.57 Aligned_cols=211 Identities=9% Similarity=0.008 Sum_probs=130.6
Q ss_pred ceEEEEEcCCCCeEEEEe--CCeEEEEecCCCCCcceeeeeecC-----CCCEEEEEECCCCCEEEEEeCC---------
Q 003087 12 KQVSLFISPRGERVAVAA--VNQVTILQKDDDYQEPCGIFNCTG-----LGASIYGAWSESHDVLGIVDDT--------- 75 (849)
Q Consensus 12 ~v~slafSPdG~~LAsas--~~~i~iw~~~~~~~~~~~~~~~~~-----~~~v~~vafSPDG~~LAs~~~d--------- 75 (849)
.+..++|||||+++++++ +++|.+|+..++ .........+ ...+..++|||||++|++++.+
T Consensus 44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~--~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~ 121 (349)
T 1jmx_B 44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTC--KNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYV 121 (349)
T ss_dssp SSCEEEECTTSSEEEEEETTTTEEEEEETTTT--EEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEE
T ss_pred CCceeEECCCCCEEEEEeCCCCcEEEEeCCCC--cEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccc
Confidence 478999999999776554 578999997642 3333332111 1125789999999999999865
Q ss_pred ---CcEEEEecCC-ccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccc---
Q 003087 76 ---HTVYFFKANG-EEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASA--- 148 (849)
Q Consensus 76 ---gtIrlWd~~g-~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~--- 148 (849)
++|++||+.+ +....+.. ......+.+++|+|++. +++. ++.|.+||+.++.....+....
T Consensus 122 ~~~~~i~~~d~~~~~~~~~~~~--~~~~~~~~~~~~s~dg~--------l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~ 189 (349)
T 1jmx_B 122 VKPPRLEVFSTADGLEAKPVRT--FPMPRQVYLMRAADDGS--------LYVA--GPDIYKMDVKTGKYTVALPLRNWNR 189 (349)
T ss_dssp ECCCEEEEEEGGGGGGBCCSEE--EECCSSCCCEEECTTSC--------EEEE--SSSEEEECTTTCCEEEEECSTTCCC
T ss_pred cCCCeEEEEECCCccccceeee--ccCCCcccceeECCCCc--------EEEc--cCcEEEEeCCCCceeccccccccCC
Confidence 8999999874 32221111 11112467788988664 2222 3348888877655322111000
Q ss_pred c--------------C--Cc--------------------------------------ceeccccCCceEEEEEcC-CCc
Q 003087 149 S--------------S--SG--------------------------------------LTLRRQFPQNVICTDYHP-ELS 173 (849)
Q Consensus 149 ~--------------~--~~--------------------------------------~~l~~~~~~~V~svafsP-dg~ 173 (849)
. . +. +.+. .....+.+++||| ||+
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~sp~dg~ 268 (349)
T 1jmx_B 190 KGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFA-DLTELYFTGLRSPKDPN 268 (349)
T ss_dssp TTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEE-ECSSCEEEEEECSSCTT
T ss_pred ccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccc-cCCCcceeeEecCCCCC
Confidence 0 0 00 0000 0012467889999 999
Q ss_pred eEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEEeCCCcE
Q 003087 174 LLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCL 253 (849)
Q Consensus 174 lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv 253 (849)
.++++ ++ .|.+|++.++. .+. .+. ....+..++|||||++|++++.+++|
T Consensus 269 ~l~~~--~~-------------~v~~~d~~~~~---~~~------~~~------~~~~~~~~~~s~dg~~l~~~~~~~~v 318 (349)
T 1jmx_B 269 QIYGV--LN-------------RLAKYDLKQRK---LIK------AAN------LDHTYYCVAFDKKGDKLYLGGTFNDL 318 (349)
T ss_dssp EEEEE--ES-------------EEEEEETTTTE---EEE------EEE------CSSCCCEEEECSSSSCEEEESBSSEE
T ss_pred EEEEE--cC-------------eEEEEECccCe---EEE------EEc------CCCCccceEECCCCCEEEEecCCCeE
Confidence 99887 43 38899987642 111 111 11246789999999999999999999
Q ss_pred EEEecCCCccccccc
Q 003087 254 YIFEMDKDNFSLSKF 268 (849)
Q Consensus 254 ~LWd~~~~~~~l~~~ 268 (849)
++||+.+.+. +..+
T Consensus 319 ~v~d~~~~~~-~~~~ 332 (349)
T 1jmx_B 319 AVFNPDTLEK-VKNI 332 (349)
T ss_dssp EEEETTTTEE-EEEE
T ss_pred EEEeccccce-eeee
Confidence 9999987754 4444
No 172
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.51 E-value=8.7e-13 Score=143.52 Aligned_cols=231 Identities=12% Similarity=0.097 Sum_probs=140.5
Q ss_pred cccceEEEEEcCCCCeEEEEeC----Ce--EEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCC-------
Q 003087 9 KTKKQVSLFISPRGERVAVAAV----NQ--VTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDT------- 75 (849)
Q Consensus 9 ~~~~v~slafSPdG~~LAsas~----~~--i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~d------- 75 (849)
+...+.+++|||||++||.++. +. |.+|+..+ +.... .... .. +..++|||||+.||.++.+
T Consensus 57 ~l~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~--g~~~~-l~~~-~~-~~~~~wspdg~~l~~~~~~~~~~~~~ 131 (347)
T 2gop_A 57 FIENATMPRISPDGKKIAFMRANEEKKVSEIWVADLET--LSSKK-ILEA-KN-IRSLEWNEDSRKLLIVGFKRREDEDF 131 (347)
T ss_dssp EEESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTT--TEEEE-EEEE-SE-EEEEEECTTSSEEEEEEECCCC----
T ss_pred EcccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCC--CceEE-EEcC-CC-ccceeECCCCCEEEEEEccCCCcCCc
Confidence 3356788999999999998863 34 55556543 22222 2221 23 8899999999999988642
Q ss_pred --------------------CcEEEEecCCccc-eecccccccccccEEEEEecCCcccccccceeEEEEeCC------C
Q 003087 76 --------------------HTVYFFKANGEEI-TRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSD------G 128 (849)
Q Consensus 76 --------------------gtIrlWd~~g~~~-~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~D------g 128 (849)
..|++||+.+... ..+.. . .+.+++|+|++ . +++.+.+ .
T Consensus 132 ~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-----~~~~~~~spdg-~-------~~~~~~~~~~~~~~ 197 (347)
T 2gop_A 132 IFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-----RFSSGIWHRDK-I-------VVNVPHREIIPQYF 197 (347)
T ss_dssp -----CCCC---------CEEEEEEEETTTTEEEEEEEE-E-----TTCEEEEETTE-E-------EEEEECCCSSCCSS
T ss_pred EEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-----CcccccCCCCe-E-------EEEEeccccccccc
Confidence 5799999976554 44433 1 35678888876 2 2222333 2
Q ss_pred -cEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcC
Q 003087 129 -FLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLE 207 (849)
Q Consensus 129 -~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~ 207 (849)
..++|.+.++... .+..+ ..+.++ ||||+.||.++.++.. +......|.+|+ ++ .
T Consensus 198 ~~~~l~~~d~~~~~------------~l~~~--~~~~~~--spdg~~l~~~~~~~~~-----~~~~~~~l~~~d--~~-~ 253 (347)
T 2gop_A 198 KFWDIYIWEDGKEE------------KMFEK--VSFYAV--DSDGERILLYGKPEKK-----YMSEHNKLYIYD--GK-E 253 (347)
T ss_dssp CCEEEEEEETTEEE------------EEEEE--ESEEEE--EECSSCEEEEECCSSS-----CCCSSCEEEEEC--SS-C
T ss_pred ccccEEEeCCCceE------------EeccC--cceeeE--CCCCCEEEEEEccccC-----CccccceEEEEC--CC-c
Confidence 5566666532221 11212 234544 9999999888766410 000112355555 22 1
Q ss_pred cccceeccccceeeccCCCccccccce-EEEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCC
Q 003087 208 LEQLYTTQIEGLYCEPKGHEVQLAHPK-VLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGR 286 (849)
Q Consensus 208 ~~~l~~~~~~~~~~~~~g~~h~~~V~~-vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~ 286 (849)
...+. .+ |...+.. ++|| || ++++++.+|+++|| +.+++ .....
T Consensus 254 ~~~l~-----------~~--~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~--~~~~~----------------- 298 (347)
T 2gop_A 254 VMGIL-----------DE--VDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGE--IKPIA----------------- 298 (347)
T ss_dssp EEESS-----------TT--CCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSS--EEEEE-----------------
T ss_pred eEecc-----------cc--CCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCc--eEEEe-----------------
Confidence 11111 12 3456775 9999 99 99999999999999 87432 11211
Q ss_pred CCCCCCcEEEEEecCCEEEEEEeCCcE-EEEEec
Q 003087 287 TKPISDITDFAWWSDNILILARKSSII-TMIDVL 319 (849)
Q Consensus 287 ~~~~~~v~~vaws~D~~la~a~~dgti-~lwdl~ 319 (849)
.+...|.+++|+| ..+++++.+++. .||.+.
T Consensus 299 -~~~~~v~~~~~s~-~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 299 -KGRHWIMGFDVDE-IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp -CSSSEEEEEEESS-SEEEEEECSSSCCEEEEES
T ss_pred -cCCCeEEeeeeeC-cEEEEEcCCCChHHheEeC
Confidence 0124578899999 655666767765 788876
No 173
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.50 E-value=8.1e-13 Score=143.79 Aligned_cols=230 Identities=9% Similarity=0.101 Sum_probs=138.1
Q ss_pred cccceEEEEEcCCCCeEEEEe----------CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCC---
Q 003087 9 KTKKQVSLFISPRGERVAVAA----------VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDT--- 75 (849)
Q Consensus 9 ~~~~v~slafSPdG~~LAsas----------~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~d--- 75 (849)
+...+..++| ||++||... ++.|.+|+..++ .+. .+ ..+..++|||||+.||.++.+
T Consensus 13 ~~~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~--~~~-~l-----~~~~~~~~SpDg~~la~~~~~~~~ 82 (347)
T 2gop_A 13 KFAYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNN--ARR-FI-----ENATMPRISPDGKKIAFMRANEEK 82 (347)
T ss_dssp CSCEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTC--CEE-EE-----ESCEEEEECTTSSEEEEEEEETTT
T ss_pred eeEEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCC--ceE-Ec-----ccCCCeEECCCCCEEEEEEeccCC
Confidence 3456788888 999998763 235777776543 211 11 356789999999999988754
Q ss_pred Cc--EEEEecCCccceecccccccccccEEEEEecCCcccccccceeEEEEeC---------------------------
Q 003087 76 HT--VYFFKANGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTS--------------------------- 126 (849)
Q Consensus 76 gt--IrlWd~~g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~--------------------------- 126 (849)
+. |++|++.+.+...+.... . +.+++|+|++.. |+..+.
T Consensus 83 ~~~~l~~~~~~~g~~~~l~~~~----~-~~~~~wspdg~~-------l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 150 (347)
T 2gop_A 83 KVSEIWVADLETLSSKKILEAK----N-IRSLEWNEDSRK-------LLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGE 150 (347)
T ss_dssp TEEEEEEEETTTTEEEEEEEES----E-EEEEEECTTSSE-------EEEEEECCCC---------CCCC---------C
T ss_pred CcceEEEEECCCCceEEEEcCC----C-ccceeECCCCCE-------EEEEEccCCCcCCcEEEcccceeecCcccccCc
Confidence 33 778888765545554322 2 778999987643 222221
Q ss_pred CCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCc
Q 003087 127 DGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNL 206 (849)
Q Consensus 127 Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~ 206 (849)
.+.|.+|++.++..... +.. + .+..++||||| ++++++.+... .+ ..+ ...+|.++++
T Consensus 151 ~~~l~~~d~~~~~~~~~-----------l~~--~-~~~~~~~spdg-~~~~~~~~~~~-~~---~~~--~~~l~~~d~~- 208 (347)
T 2gop_A 151 KTTFWIFDTESEEVIEE-----------FEK--P-RFSSGIWHRDK-IVVNVPHREII-PQ---YFK--FWDIYIWEDG- 208 (347)
T ss_dssp EEEEEEEETTTTEEEEE-----------EEE--E-TTCEEEEETTE-EEEEEECCCSS-CC---SSC--CEEEEEEETT-
T ss_pred cceEEEEECCCCeEEee-----------ecC--C-CcccccCCCCe-EEEEEeccccc-cc---ccc--cccEEEeCCC-
Confidence 25678888766543111 221 2 58899999999 77766544210 00 000 1356665522
Q ss_pred CcccceeccccceeeccCCCccccccceEEEccCCCEEEEEeCCC--------cEEEEecCCCccccccccccccccccc
Q 003087 207 ELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNG--------CLYIFEMDKDNFSLSKFACGERFDLQV 278 (849)
Q Consensus 207 ~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dg--------tv~LWd~~~~~~~l~~~~~~~~~~~~~ 278 (849)
....+.. + ..+.. +||||+.||.++.++ .|.+|| +++. ....
T Consensus 209 ~~~~l~~--------------~-~~~~~--~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~--~~l~--------- 258 (347)
T 2gop_A 209 KEEKMFE--------------K-VSFYA--VDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEV--MGIL--------- 258 (347)
T ss_dssp EEEEEEE--------------E-ESEEE--EEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCE--EESS---------
T ss_pred ceEEecc--------------C-cceee--ECCCCCEEEEEEccccCCccccceEEEEC--CCce--Eecc---------
Confidence 1111211 2 23333 499999999888653 577777 3321 1211
Q ss_pred ccccCCCCCCCCCCcEE-EEEecCCEEEEEEeCCcEEEEEecCCc
Q 003087 279 ADSLFDGRTKPISDITD-FAWWSDNILILARKSSIITMIDVLSGL 322 (849)
Q Consensus 279 ~~~l~~~~~~~~~~v~~-vaws~D~~la~a~~dgti~lwdl~~~~ 322 (849)
+ .+...+.+ ++|+ |+.+++++.+|.++|| +.+++
T Consensus 259 -----~---~~~~~~~~~~~~s-dg~~~~~~~~~~~~l~-~~~g~ 293 (347)
T 2gop_A 259 -----D---EVDRGVGQAKIKD-GKVYFTLFEEGSVNLY-IWDGE 293 (347)
T ss_dssp -----T---TCCSEEEEEEEET-TEEEEEEEETTEEEEE-EESSS
T ss_pred -----c---cCCcccCCccEEc-CcEEEEEecCCcEEEE-EcCCc
Confidence 1 12234665 8898 8855678899999999 88554
No 174
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.46 E-value=4.1e-12 Score=140.98 Aligned_cols=253 Identities=10% Similarity=0.036 Sum_probs=147.8
Q ss_pred EEEEcCCCCeEEEEe-----------CCeEEEEecCCCCCcceeeeeec-----CCCCEEEEEECCCCCEEEEEeC--CC
Q 003087 15 SLFISPRGERVAVAA-----------VNQVTILQKDDDYQEPCGIFNCT-----GLGASIYGAWSESHDVLGIVDD--TH 76 (849)
Q Consensus 15 slafSPdG~~LAsas-----------~~~i~iw~~~~~~~~~~~~~~~~-----~~~~v~~vafSPDG~~LAs~~~--dg 76 (849)
.++|||||++|.+++ +++|.+||... .+..+..... +......++|||||++|.++.. ++
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t--~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~ 131 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADK--LTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPAT 131 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTT--CCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSE
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcC--CcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCC
Confidence 899999999998885 35799999653 2344444321 1123457999999999998864 68
Q ss_pred cEEEEecC-Ccccee-cccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcce
Q 003087 77 TVYFFKAN-GEEITR-FTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLT 154 (849)
Q Consensus 77 tIrlWd~~-g~~~~~-l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~ 154 (849)
+|.+||+. ++.+.+ +... ...++.+.|++. ..++..+.||.+..|+............. ...+.
T Consensus 132 ~v~v~d~~~~~~~~~~i~~~------~~~~v~~~p~~~------~~~~~~~~dg~~~~v~~~~~g~~~~~~~~--~~~~~ 197 (361)
T 2oiz_A 132 SIGIVDVAKGDYVEDVTAAA------GCWSVIPQPNRP------RSFMTICGDGGLLTINLGEDGKVASQSRS--KQMFS 197 (361)
T ss_dssp EEEEEETTTTEEEEEEGGGT------TEEEEEECTTSS------SEEEEEETTSSEEEEEECTTSSEEEEEEC--CCCSC
T ss_pred eEEEEECCCCcEEEEEecCC------CcceeEEcCCCC------eeEEEECCCCcEEEEEECCCCcEeeeccc--cceEc
Confidence 99999997 554444 3221 123455555331 13566689999999988652221100000 00000
Q ss_pred eccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccce
Q 003087 155 LRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPK 234 (849)
Q Consensus 155 l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~ 234 (849)
.+ . .-..+.++|+|..++..+.++ .|.+|++.+.. ...+........-....+. ...+...
T Consensus 198 --~~-~-~~~~~~~~~~g~~~~~~~~~~-------------~v~v~d~~~~~-~~~~~~~~~~~~~~~~~~~-~p~g~~~ 258 (361)
T 2oiz_A 198 --VK-D-DPIFIAPALDKDKAHFVSYYG-------------NVYSADFSGDE-VKVDGPWSLLNDEDKAKNW-VPGGYNL 258 (361)
T ss_dssp --TT-T-SCBCSCCEECSSEEEEEBTTS-------------EEEEEECSSSS-CEEEEEEESCCHHHHHTTC-EECCSSC
T ss_pred --CC-C-CceEEEecccCCEEEEEeCCC-------------eEEEEEecCCC-ceecccccccCcccccccc-ccCCeeE
Confidence 00 1 112344578887777766654 26777765431 0000000000000000000 0112335
Q ss_pred EEEccCCCEEEEEeC-----------CCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE
Q 003087 235 VLISPQGKFVATSDT-----------NGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI 303 (849)
Q Consensus 235 vafSPDG~~LAs~s~-----------Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~ 303 (849)
++|+|||+.+..+.. +++|.+||+.+.+. ++.++. + . +..++|+|||+
T Consensus 259 ~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~-v~~i~~------------------~-~-p~~ia~spdg~ 317 (361)
T 2oiz_A 259 VGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQR-VARIPG------------------R-D-ALSMTIDQQRN 317 (361)
T ss_dssp EEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEE-EEEEEC------------------T-T-CCEEEEETTTT
T ss_pred EEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcE-EEEEec------------------C-C-eeEEEECCCCC
Confidence 899999998887643 45899999998754 444431 1 2 78999999987
Q ss_pred E-EEEEeCCcEEEEEecCC--ccc
Q 003087 304 L-ILARKSSIITMIDVLSG--LKV 324 (849)
Q Consensus 304 l-a~a~~dgti~lwdl~~~--~~l 324 (849)
. +++.. ++|.|||..++ +.+
T Consensus 318 ~l~v~n~-~~v~v~D~~t~~l~~~ 340 (361)
T 2oiz_A 318 LMLTLDG-GNVNVYDISQPEPKLL 340 (361)
T ss_dssp EEEEECS-SCEEEEECSSSSCEEE
T ss_pred EEEEeCC-CeEEEEECCCCcceee
Confidence 4 44554 99999999998 643
No 175
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.45 E-value=8.8e-12 Score=150.57 Aligned_cols=245 Identities=9% Similarity=-0.013 Sum_probs=150.7
Q ss_pred ceEEEEEcCCCCeEEEEeC--C----eEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCc--------
Q 003087 12 KQVSLFISPRGERVAVAAV--N----QVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHT-------- 77 (849)
Q Consensus 12 ~v~slafSPdG~~LAsas~--~----~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgt-------- 77 (849)
.+.+++|||||++||.+++ + +|.+|+..++ .... .+.. ...+..++|||||+.|+.++.+++
T Consensus 126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg--~~~~-~~~~-~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~ 201 (710)
T 2xdw_A 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGA--KELP-DVLE-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTE 201 (710)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTT--EEEE-EEEE-EECSCCEEECTTSSEEEEEECCCCSSCCSSSC
T ss_pred EEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCC--CCCc-cccc-CcccceEEEEeCCCEEEEEEECCccccccccc
Confidence 4778999999999998852 2 7999998653 2221 1111 112567999999999999998877
Q ss_pred --------EEEEecCCccc--eecccccccccccEEEEEecCCcccccccceeEEEEeC-----CCcEEEEEecC-----
Q 003087 78 --------VYFFKANGEEI--TRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTS-----DGFLHQIEISQ----- 137 (849)
Q Consensus 78 --------IrlWd~~g~~~--~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~-----Dg~v~lw~~~~----- 137 (849)
|++|++.+... ..+... ......+.++.|+||+... ++.+. +..|.+|++.+
T Consensus 202 ~~~~~~~~v~~~~l~t~~~~~~~v~~~-~~~~~~~~~~~~SpDg~~l-------~~~~~~~~~~~~~l~~~d~~~~~~~~ 273 (710)
T 2xdw_A 202 TSTNLHQKLYYHVLGTDQSEDILCAEF-PDEPKWMGGAELSDDGRYV-------LLSIREGCDPVNRLWYCDLQQESNGI 273 (710)
T ss_dssp CCCCCCCEEEEEETTSCGGGCEEEECC-TTCTTCEEEEEECTTSCEE-------EEEEECSSSSCCEEEEEEGGGSSSSS
T ss_pred cccCCCCEEEEEECCCCcccceEEecc-CCCCeEEEEEEEcCCCCEE-------EEEEEccCCCccEEEEEECccccccc
Confidence 99999964331 111111 1112346788999876432 22222 56899999876
Q ss_pred -CCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCc--Ccccceec
Q 003087 138 -DPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNL--ELEQLYTT 214 (849)
Q Consensus 138 -~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~--~~~~l~~~ 214 (849)
+.. .. ..+..+ ...+.. .|+|||+.|+..++.+. ....|.+|++.++. ..+.+..
T Consensus 274 ~~~~-~~---------~~l~~~-~~~~~~-~~s~dg~~l~~~s~~~~---------~~~~l~~~d~~~~~~~~~~~l~~- 331 (710)
T 2xdw_A 274 TGIL-KW---------VKLIDN-FEGEYD-YVTNEGTVFTFKTNRHS---------PNYRLINIDFTDPEESKWKVLVP- 331 (710)
T ss_dssp CSSC-CC---------EEEECS-SSSCEE-EEEEETTEEEEEECTTC---------TTCEEEEEETTSCCGGGCEEEEC-
T ss_pred CCcc-ce---------EEeeCC-CCcEEE-EEeccCCEEEEEECCCC---------CCCEEEEEeCCCCCcccceeccC-
Confidence 321 01 122222 223444 58999999888776531 12247778776541 1111211
Q ss_pred cccceeeccCCCccc--cccceEEEccCCCEEEEEeCCCcEEE--EecCCCcccccccccccccccccccccCCCCCCCC
Q 003087 215 QIEGLYCEPKGHEVQ--LAHPKVLISPQGKFVATSDTNGCLYI--FEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPI 290 (849)
Q Consensus 215 ~~~~~~~~~~g~~h~--~~V~~vafSPDG~~LAs~s~Dgtv~L--Wd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~ 290 (849)
|. ..+..++|+|++.++++...||..+| |++.+++. +..++. +.
T Consensus 332 -------------~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~-~~~l~~------------------~~ 379 (710)
T 2xdw_A 332 -------------EHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGAL-LKIFPL------------------EV 379 (710)
T ss_dssp -------------CCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCE-EEEECC------------------CS
T ss_pred -------------CCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCE-EEecCC------------------CC
Confidence 22 25778999999999999999996655 55534422 222221 12
Q ss_pred CCcEEEEEecCC-EEEEEE----eCCcEEEEEecCCc
Q 003087 291 SDITDFAWWSDN-ILILAR----KSSIITMIDVLSGL 322 (849)
Q Consensus 291 ~~v~~vaws~D~-~la~a~----~dgti~lwdl~~~~ 322 (849)
..+..++|+||+ .++.+. ..++|.+||+.+++
T Consensus 380 ~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 380 GSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp SEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred ceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 347788999987 455443 34689999998876
No 176
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.44 E-value=1e-12 Score=144.91 Aligned_cols=248 Identities=10% Similarity=0.036 Sum_probs=141.5
Q ss_pred EEEcCCCCeEEEEeC-CeEEEEecCCCCCcceeeeeecCCCCEEE-------------------EEECCCCCEEEEE---
Q 003087 16 LFISPRGERVAVAAV-NQVTILQKDDDYQEPCGIFNCTGLGASIY-------------------GAWSESHDVLGIV--- 72 (849)
Q Consensus 16 lafSPdG~~LAsas~-~~i~iw~~~~~~~~~~~~~~~~~~~~v~~-------------------vafSPDG~~LAs~--- 72 (849)
++|||||++||.++. ++|.+|+..++ ........+ ...... ++|||||+.++.+
T Consensus 86 ~~~spdg~~l~~~~~~~~l~~~d~~~~--~~~~~~~~~-~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~ 162 (396)
T 3c5m_A 86 GFISTDERAFFYVKNELNLMKVDLETL--EEQVIYTVD-EEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFY 162 (396)
T ss_dssp CEECTTSSEEEEEETTTEEEEEETTTC--CEEEEEECC-TTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHH
T ss_pred ceECCCCCEEEEEEcCCcEEEEECCCC--CcEEEEecc-cccCCCCCEEEeccCCccccccccccccCCCCcceeeeeec
Confidence 789999999998874 67999997643 222111111 111122 4679999988865
Q ss_pred --eCCCcEEEEecCCccceecccccccccccEEEEEecC-CcccccccceeEEEEeCC------CcEEEEEecCCCCccc
Q 003087 73 --DDTHTVYFFKANGEEITRFTNKHLKVSLPIIGLIAQD-ETDVQRSCLCSFTVFTSD------GFLHQIEISQDPSASI 143 (849)
Q Consensus 73 --~~dgtIrlWd~~g~~~~~l~~~~~~~~~~V~~l~fs~-~~~~~~s~~~~~~~~s~D------g~v~lw~~~~~~~~~~ 143 (849)
..++.|++||+.+.....+..+ ...+..+.|+| ++.. ++..+.+ ..|.+|++..+.....
T Consensus 163 ~~~~~~~l~~~d~~~g~~~~~~~~----~~~~~~~~~sp~dg~~-------l~~~~~~~~~~~~~~l~~~d~~~~~~~~l 231 (396)
T 3c5m_A 163 HTNPTCRLIKVDIETGELEVIHQD----TAWLGHPIYRPFDDST-------VGFCHEGPHDLVDARMWLVNEDGSNVRKI 231 (396)
T ss_dssp HTCCCEEEEEEETTTCCEEEEEEE----SSCEEEEEEETTEEEE-------EEEEECSCSSSCSCCCEEEETTSCCCEES
T ss_pred cCCCcceEEEEECCCCcEEeeccC----CcccccceECCCCCCE-------EEEEecCCCCCCCceEEEEECCCCceeEe
Confidence 4667899999976554444432 24577888888 5432 2222322 3567777654332111
Q ss_pred ccccccCCcceecccc-CCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeec
Q 003087 144 SSASASSSGLTLRRQF-PQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCE 222 (849)
Q Consensus 144 ~~~~~~~~~~~l~~~~-~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~ 222 (849)
..+. ...+..++|||||+.|+.++.++. .....|.+|++.++. ...+. .
T Consensus 232 ------------~~~~~~~~~~~~~~spdg~~l~~~~~~~~--------~~~~~l~~~d~~~g~-~~~l~---------~ 281 (396)
T 3c5m_A 232 ------------KEHAEGESCTHEFWIPDGSAMAYVSYFKG--------QTDRVIYKANPETLE-NEEVM---------V 281 (396)
T ss_dssp ------------SCCCTTEEEEEEEECTTSSCEEEEEEETT--------TCCEEEEEECTTTCC-EEEEE---------E
T ss_pred ------------eccCCCccccceEECCCCCEEEEEecCCC--------CccceEEEEECCCCC-eEEee---------e
Confidence 1111 224888999999998887766530 011238888876542 11111 1
Q ss_pred cCCCccccccceEEEcc-CCCEEEEEe----------------CCCcEEEEecCCCcccccccccccccccccccccCCC
Q 003087 223 PKGHEVQLAHPKVLISP-QGKFVATSD----------------TNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDG 285 (849)
Q Consensus 223 ~~g~~h~~~V~~vafSP-DG~~LAs~s----------------~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~ 285 (849)
..+ .. ++||| ||++|++++ .++.|.+||+.+++. ..+..... . ...+..+
T Consensus 282 ~~~------~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~--~~l~~~~~--~--~~~~~~~ 348 (396)
T 3c5m_A 282 MPP------CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA--QKLCKHST--S--WDVLDGD 348 (396)
T ss_dssp CCS------EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBC--CEEEECCC--C--CCCBTTB
T ss_pred CCC------CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCce--EEccCCCC--c--ccccccc
Confidence 111 22 89999 999999865 347899999987632 23321100 0 0000000
Q ss_pred CCCCCCCcEEEEEecCCE-EEEEE-eCCcEEEEEe--cCCcc
Q 003087 286 RTKPISDITDFAWWSDNI-LILAR-KSSIITMIDV--LSGLK 323 (849)
Q Consensus 286 ~~~~~~~v~~vaws~D~~-la~a~-~dgti~lwdl--~~~~~ 323 (849)
....+.+++|+|||. |+.++ .+|...||.+ .+++.
T Consensus 349 ---~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~~ 387 (396)
T 3c5m_A 349 ---RQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESYK 387 (396)
T ss_dssp ---SSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTCC
T ss_pred ---ccCCCCCceEccCCCeEEEEecCCCCceEEEEEEccccc
Confidence 001245578999985 55554 4566666655 45543
No 177
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.42 E-value=2.2e-11 Score=130.00 Aligned_cols=241 Identities=10% Similarity=0.000 Sum_probs=140.5
Q ss_pred cceEEEEEcCCCC-eEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEec-CCcc
Q 003087 11 KKQVSLFISPRGE-RVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKA-NGEE 87 (849)
Q Consensus 11 ~~v~slafSPdG~-~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~-~g~~ 87 (849)
....+++|+|||+ +++++. ++.|.+|+..++ ...+.. ....+..++|+|||+++++...++.|.+||. +|+.
T Consensus 28 ~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~----~~~~~~-~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~ 102 (296)
T 3e5z_A 28 TWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ----LSPEMH-PSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEW 102 (296)
T ss_dssp SSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC----EEEEES-SCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCE
T ss_pred ccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC----eEEEEC-CCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcE
Confidence 5678999999999 566665 578999997642 223332 2456789999999999998888899999999 5653
Q ss_pred ceecccc-cccccccEEEEEecCCcccccccceeEEEEe-----------CCCcEEEEEecCCCCcccccccccCCccee
Q 003087 88 ITRFTNK-HLKVSLPIIGLIAQDETDVQRSCLCSFTVFT-----------SDGFLHQIEISQDPSASISSASASSSGLTL 155 (849)
Q Consensus 88 ~~~l~~~-~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s-----------~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l 155 (849)
..+... .......+.++++.|++..-.+.. .. .+ ..+.-.+|.+..++.... +
T Consensus 103 -~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~-~~--g~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~-----------~ 167 (296)
T 3e5z_A 103 -ESIADSFEGKKLNSPNDVCLAPDGSLWFSDP-TY--GIDKPEEGYGGEMELPGRWVFRLAPDGTLSA-----------P 167 (296)
T ss_dssp -EEEECEETTEECCCCCCEEECTTSCEEEEEC-SH--HHHCGGGSSCCCCCSSSCEEEEECTTSCEEE-----------E
T ss_pred -EEEeeccCCCCCCCCCCEEECCCCCEEEECC-cc--ccccccccccccccCCCcEEEEECCCCCEEE-----------e
Confidence 333221 111112355678877553211000 00 01 001224555544321111 1
Q ss_pred ccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceE
Q 003087 156 RRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKV 235 (849)
Q Consensus 156 ~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~v 235 (849)
.++ ....++++|+|||++|++.+.++ .|..|++.....+. ... ..+ . . +...+..|
T Consensus 168 ~~~-~~~~~gi~~s~dg~~lv~~~~~~-------------~i~~~~~~~~g~~~--~~~---~~~-~--~--~~~~p~~i 223 (296)
T 3e5z_A 168 IRD-RVKPNGLAFLPSGNLLVSDTGDN-------------ATHRYCLNARGETE--YQG---VHF-T--V--EPGKTDGL 223 (296)
T ss_dssp ECC-CSSEEEEEECTTSCEEEEETTTT-------------EEEEEEECSSSCEE--EEE---EEE-C--C--SSSCCCSE
T ss_pred ecC-CCCCccEEECCCCCEEEEeCCCC-------------eEEEEEECCCCcCc--CCC---eEe-e--C--CCCCCCeE
Confidence 112 23478999999999984433333 38888886321110 000 111 1 1 23456789
Q ss_pred EEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEE-ecCCE-EEEEEeCCcE
Q 003087 236 LISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAW-WSDNI-LILARKSSII 313 (849)
Q Consensus 236 afSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaw-s~D~~-la~a~~dgti 313 (849)
+|+|||++.++. ++.|.+|+..+. . +..+.. ... +.+++| .||+. |.+++.+ .
T Consensus 224 ~~d~~G~l~v~~--~~~v~~~~~~g~-~-~~~~~~------------------~~~-~~~~~f~~~d~~~L~v~t~~-~- 278 (296)
T 3e5z_A 224 RVDAGGLIWASA--GDGVHVLTPDGD-E-LGRVLT------------------PQT-TSNLCFGGPEGRTLYMTVST-E- 278 (296)
T ss_dssp EEBTTSCEEEEE--TTEEEEECTTSC-E-EEEEEC------------------SSC-CCEEEEESTTSCEEEEEETT-E-
T ss_pred EECCCCCEEEEc--CCeEEEECCCCC-E-EEEEEC------------------CCC-ceeEEEECCCCCEEEEEcCC-e-
Confidence 999999988876 899999998754 2 333321 112 678899 47765 6666654 3
Q ss_pred EEEEecCC
Q 003087 314 TMIDVLSG 321 (849)
Q Consensus 314 ~lwdl~~~ 321 (849)
+|.+...
T Consensus 279 -l~~~~~~ 285 (296)
T 3e5z_A 279 -FWSIETN 285 (296)
T ss_dssp -EEEEECS
T ss_pred -EEEEEcc
Confidence 4444443
No 178
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.37 E-value=3.2e-10 Score=122.63 Aligned_cols=243 Identities=9% Similarity=0.036 Sum_probs=145.6
Q ss_pred cceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCC----CcEEEEecCC
Q 003087 11 KKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDT----HTVYFFKANG 85 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~d----gtIrlWd~~g 85 (849)
..+.+++|+|||++++++. ++.|.+|+..++ ... .+.......+.+++|+|||++++++..+ +.|.+||..+
T Consensus 45 ~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~--~~~-~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~ 121 (333)
T 2dg1_A 45 LQLEGLNFDRQGQLFLLDVFEGNIFKINPETK--EIK-RPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENG 121 (333)
T ss_dssp CCEEEEEECTTSCEEEEETTTCEEEEECTTTC--CEE-EEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTS
T ss_pred ccccCcEECCCCCEEEEECCCCEEEEEeCCCC--cEE-EEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCC
Confidence 4578999999999887776 578999986543 211 2221224578999999999999988777 7899999987
Q ss_pred ccceecccccccccccEEEEEecCCcccccccceeEEEEeCC-----CcEEEEEecCC--CCcccccccccCCcceeccc
Q 003087 86 EEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSD-----GFLHQIEISQD--PSASISSASASSSGLTLRRQ 158 (849)
Q Consensus 86 ~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~D-----g~v~lw~~~~~--~~~~~~~~~~~~~~~~l~~~ 158 (849)
..+..+.... .....+.+++++|++. +++.+.. +...+|.+... .... +..+
T Consensus 122 ~~~~~~~~~~-~~~~~~~~i~~d~~g~--------l~v~~~~~~~~~~~~~l~~~~~~~~~~~~------------~~~~ 180 (333)
T 2dg1_A 122 DNLQDIIEDL-STAYCIDDMVFDSKGG--------FYFTDFRGYSTNPLGGVYYVSPDFRTVTP------------IIQN 180 (333)
T ss_dssp CSCEEEECSS-SSCCCEEEEEECTTSC--------EEEEECCCBTTBCCEEEEEECTTSCCEEE------------EEEE
T ss_pred CEEEEEEccC-ccCCcccceEECCCCC--------EEEEeccccccCCCceEEEEeCCCCEEEE------------eecC
Confidence 6654332111 1124578899987653 2222321 23455555432 2111 1111
Q ss_pred cCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCC-cCcccceeccccceeeccCCCccccccceEEE
Q 003087 159 FPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHN-LELEQLYTTQIEGLYCEPKGHEVQLAHPKVLI 237 (849)
Q Consensus 159 ~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~-~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vaf 237 (849)
. ..+++++|+|||+.|+++.... + .|.+|++... ..+..+.. ..+....+ + ..+..+++
T Consensus 181 ~-~~~~~i~~~~dg~~l~v~~~~~----------~--~i~~~d~~~~g~~~~~~~~----~~~~~~~~--~-~~~~~i~~ 240 (333)
T 2dg1_A 181 I-SVANGIALSTDEKVLWVTETTA----------N--RLHRIALEDDGVTIQPFGA----TIPYYFTG--H-EGPDSCCI 240 (333)
T ss_dssp E-SSEEEEEECTTSSEEEEEEGGG----------T--EEEEEEECTTSSSEEEEEE----EEEEECCS--S-SEEEEEEE
T ss_pred C-CcccceEECCCCCEEEEEeCCC----------C--eEEEEEecCCCcCcccccc----eEEEecCC--C-CCCCceEE
Confidence 1 2478999999999776654322 1 3788888531 11111100 00001111 1 35668999
Q ss_pred ccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCC-EEEEEEeCC
Q 003087 238 SPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDN-ILILARKSS 311 (849)
Q Consensus 238 SPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~-~la~a~~dg 311 (849)
+|||++.++...++.|.+|+..+. . +..+..... . .++...+.+++|+||+ .|.+++.+|
T Consensus 241 d~~G~l~v~~~~~~~v~~~d~~g~-~-~~~~~~~~~----------~--~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 241 DSDDNLYVAMYGQGRVLVFNKRGY-P-IGQILIPGR----------D--EGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp BTTCCEEEEEETTTEEEEECTTSC-E-EEEEECTTG----------G--GTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred CCCCCEEEEEcCCCEEEEECCCCC-E-EEEEEcCCC----------c--cccccCcceEEECCCCCEEEEEeCcc
Confidence 999999998888999999998643 2 333321100 0 0122347889999996 676666554
No 179
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.36 E-value=1.1e-10 Score=122.06 Aligned_cols=238 Identities=10% Similarity=-0.005 Sum_probs=150.8
Q ss_pred ceEEEEEcCCCCeEE-EEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCCccce
Q 003087 12 KQVSLFISPRGERVA-VAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANGEEIT 89 (849)
Q Consensus 12 ~v~slafSPdG~~LA-sas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~~~~ 89 (849)
...+++++|||++.+ +.+ ++.|.+|+..... .......+......++|+|||+++++.. ++.|.+||..|....
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~ 100 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTG---TTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT 100 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC--------EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcc---cceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe
Confidence 789999999999777 433 5789888754321 1111111234567899999999777766 889999999887655
Q ss_pred ecccccccccccEEEEEecCCcccccccceeEEEE-eCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEE
Q 003087 90 RFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVF-TSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDY 168 (849)
Q Consensus 90 ~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~-s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svaf 168 (849)
.+.... ...+.++++.+++. +++. ..++.|..|+..+...... ...+ ...+.++++
T Consensus 101 ~~~~~~---~~~p~~i~~~~~g~--------l~v~~~~~~~i~~~~~~~~~~~~~-----------~~~~-~~~p~~i~~ 157 (270)
T 1rwi_B 101 VLPFDG---LNYPEGLAVDTQGA--------VYVADRGNNRVVKLAAGSKTQTVL-----------PFTG-LNDPDGVAV 157 (270)
T ss_dssp ECCCCS---CSSEEEEEECTTCC--------EEEEEGGGTEEEEECTTCCSCEEC-----------CCCS-CCSCCCEEE
T ss_pred eeecCC---cCCCcceEECCCCC--------EEEEECCCCEEEEEECCCceeEee-----------cccc-CCCceeEEE
Confidence 443221 13477889877543 2222 4567888885432221100 0011 124788999
Q ss_pred cCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEEe
Q 003087 169 HPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSD 248 (849)
Q Consensus 169 sPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s 248 (849)
+|+|++.++...++ .|..|+..+.. .... ... +...+..|+++|+|++.++..
T Consensus 158 ~~~g~l~v~~~~~~-------------~i~~~~~~~~~----~~~~--------~~~--~~~~p~~i~~d~~g~l~v~~~ 210 (270)
T 1rwi_B 158 DNSGNVYVTDTDNN-------------RVVKLEAESNN----QVVL--------PFT--DITAPWGIAVDEAGTVYVTEH 210 (270)
T ss_dssp CTTCCEEEEEGGGT-------------EEEEECTTTCC----EEEC--------CCS--SCCSEEEEEECTTCCEEEEET
T ss_pred eCCCCEEEEECCCC-------------EEEEEecCCCc----eEee--------ccc--CCCCceEEEECCCCCEEEEEC
Confidence 99999776544333 37778766531 1000 001 124567899999998888888
Q ss_pred CCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCEEEEE-EeCCcEEEEEecCCc
Q 003087 249 TNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNILILA-RKSSIITMIDVLSGL 322 (849)
Q Consensus 249 ~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~la~a-~~dgti~lwdl~~~~ 322 (849)
.++.|..|+..+... .... ......+.++++.+||.+.++ ..++.|+++++...+
T Consensus 211 ~~~~v~~~~~~~~~~--~~~~-----------------~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 211 NTNQVVKLLAGSTTS--TVLP-----------------FTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp TTSCEEEECTTCSCC--EECC-----------------CCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred CCCcEEEEcCCCCcc--eeec-----------------cCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence 899999999876522 1111 012245789999999886554 578899999987654
No 180
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.35 E-value=8.3e-11 Score=124.57 Aligned_cols=202 Identities=11% Similarity=0.093 Sum_probs=132.0
Q ss_pred ccceEEEEE-cCCCCeEEEEe--CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCCc
Q 003087 10 TKKQVSLFI-SPRGERVAVAA--VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANGE 86 (849)
Q Consensus 10 ~~~v~slaf-SPdG~~LAsas--~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~ 86 (849)
...+..++| +++|+++++.. ++.|.+|+... .....+..........++++|||+++++...++.|++||.+|+
T Consensus 76 ~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~g---~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~ 152 (286)
T 1q7f_A 76 LLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYG---QFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN 152 (286)
T ss_dssp BSSEEEEEEETTTTEEEEEECGGGCEEEEECTTS---CEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC
T ss_pred ccCceEEEEEcCCCeEEEEcCCCCCEEEEECCCC---cEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCC
Confidence 356899999 68898887774 67899998432 2333332112346789999999999998888999999999887
Q ss_pred cceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEE
Q 003087 87 EITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICT 166 (849)
Q Consensus 87 ~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~sv 166 (849)
.+..+.... ....+.+|+|++++.. +++-+.++.|++|+... .....+. ..++ ...+.++
T Consensus 153 ~~~~~~~~~--~~~~p~~i~~~~~g~l-------~v~~~~~~~i~~~~~~g-~~~~~~~---------~~g~-~~~p~~i 212 (286)
T 1q7f_A 153 VLHKFGCSK--HLEFPNGVVVNDKQEI-------FISDNRAHCVKVFNYEG-QYLRQIG---------GEGI-TNYPIGV 212 (286)
T ss_dssp EEEEEECTT--TCSSEEEEEECSSSEE-------EEEEGGGTEEEEEETTC-CEEEEES---------CTTT-SCSEEEE
T ss_pred EEEEeCCCC--ccCCcEEEEECCCCCE-------EEEECCCCEEEEEcCCC-CEEEEEc---------cCCc-cCCCcEE
Confidence 665553211 1134778999876532 22224688999998642 2211111 0111 1358999
Q ss_pred EEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEE
Q 003087 167 DYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVAT 246 (849)
Q Consensus 167 afsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs 246 (849)
+++|+|+++++...++ ..|.+|+..+. .+.. +... . ....+..++|+|||+++++
T Consensus 213 ~~d~~G~l~v~~~~~~------------~~i~~~~~~g~----~~~~------~~~~-~--~~~~~~~i~~~~~g~l~vs 267 (286)
T 1q7f_A 213 GINSNGEILIADNHNN------------FNLTIFTQDGQ----LISA------LESK-V--KHAQCFDVALMDDGSVVLA 267 (286)
T ss_dssp EECTTCCEEEEECSSS------------CEEEEECTTSC----EEEE------EEES-S--CCSCEEEEEEETTTEEEEE
T ss_pred EECCCCCEEEEeCCCC------------EEEEEECCCCC----EEEE------Eccc-C--CCCcceeEEECCCCcEEEE
Confidence 9999999887665442 03888986542 1111 1111 0 1224668999999998887
Q ss_pred EeCCCcEEEEecCC
Q 003087 247 SDTNGCLYIFEMDK 260 (849)
Q Consensus 247 ~s~Dgtv~LWd~~~ 260 (849)
+.|++|++|+...
T Consensus 268 -~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 268 -SKDYRLYIYRYVQ 280 (286)
T ss_dssp -ETTTEEEEEECSC
T ss_pred -CCCCeEEEEEccc
Confidence 6799999998864
No 181
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.35 E-value=1.8e-11 Score=147.58 Aligned_cols=245 Identities=8% Similarity=-0.052 Sum_probs=143.0
Q ss_pred ceEEEEEcCCCCeEEEEe-----C-CeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCc--------
Q 003087 12 KQVSLFISPRGERVAVAA-----V-NQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHT-------- 77 (849)
Q Consensus 12 ~v~slafSPdG~~LAsas-----~-~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgt-------- 77 (849)
.+.+++|||||++||.+. + .+|++|++.++. ....-... ......++|||||+.|++++.|++
T Consensus 122 ~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~--~~~~~~~~-~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~ 198 (695)
T 2bkl_A 122 SLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGE--WSKVDVIE-GGKYATPKWTPDSKGFYYEWLPTDPSIKVDER 198 (695)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCC--BCSSCCBS-CCTTCCCEECTTSSEEEEEECCCCTTSCGGGG
T ss_pred EEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCC--CcCCcccC-cccccceEEecCCCEEEEEEecCCCCCccccC
Confidence 588999999999999553 2 479999987542 11000111 111257999999999999999887
Q ss_pred -----EEEEecCCccc--eecccccccccccEEEEEecCCcccccccceeEEEEeCC--CcEEEEEecC--CCCcccccc
Q 003087 78 -----VYFFKANGEEI--TRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSD--GFLHQIEISQ--DPSASISSA 146 (849)
Q Consensus 78 -----IrlWd~~g~~~--~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~D--g~v~lw~~~~--~~~~~~~~~ 146 (849)
|++|++.+... ..+.... +....+.++.|+||+.. +++.+.+ ++..+|-+.. +..
T Consensus 199 ~~~~~v~~~~l~t~~~~~~lv~~~~-~~~~~~~~~~~SpDG~~-------l~~~~~~~~~~~~l~~~~~~~~~~------ 264 (695)
T 2bkl_A 199 PGYTTIRYHTLGTEPSKDTVVHERT-GDPTTFLQSDLSRDGKY-------LFVYILRGWSENDVYWKRPGEKDF------ 264 (695)
T ss_dssp GGGCEEEEEETTSCGGGCEEEECCC-CCTTCEEEEEECTTSCC-------EEEEEEETTTEEEEEEECTTCSSC------
T ss_pred CCCCEEEEEECCCCchhceEEEecC-CCCEEEEEEEECCCCCE-------EEEEEeCCCCceEEEEEcCCCCce------
Confidence 99999974321 1121111 11235778999997743 2222333 3444554432 221
Q ss_pred cccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcC--cccceeccccceeeccC
Q 003087 147 SASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLE--LEQLYTTQIEGLYCEPK 224 (849)
Q Consensus 147 ~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~--~~~l~~~~~~~~~~~~~ 224 (849)
..+..+. ..+....+ |+|+ ++..++.+ .+...|.+|++.++.. ...+.. +
T Consensus 265 ------~~l~~~~-~~~~~~~~-~~g~-l~~~s~~~---------~~~~~l~~~d~~~~~~~~~~~l~~---------~- 316 (695)
T 2bkl_A 265 ------RLLVKGV-GAKYEVHA-WKDR-FYVLTDEG---------APRQRVFEVDPAKPARASWKEIVP---------E- 316 (695)
T ss_dssp ------EEEEECS-SCCEEEEE-ETTE-EEEEECTT---------CTTCEEEEEBTTBCSGGGCEEEEC---------C-
T ss_pred ------EEeecCC-CceEEEEe-cCCc-EEEEECCC---------CCCCEEEEEeCCCCCccCCeEEec---------C-
Confidence 1222232 34666667 6777 55554422 0122477788765311 111211 0
Q ss_pred CCccccccceEEEccCCCEEEEEeCCCcEEEEecCC-CcccccccccccccccccccccCCCCCCCCCCcEEEEEecCC-
Q 003087 225 GHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDK-DNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDN- 302 (849)
Q Consensus 225 g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~-~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~- 302 (849)
. +...+..++|+ +|+++++...||+.+||.++. ++. +..+... ....+..++|+||+
T Consensus 317 ~--~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~-~~~l~~~-----------------~~~~v~~~~~s~d~~ 375 (695)
T 2bkl_A 317 D--SSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKP-VRTVQLP-----------------GVGAASNLMGLEDLD 375 (695)
T ss_dssp C--SSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCE-EEECCCS-----------------SSSEECCCBSCTTCS
T ss_pred C--CCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCe-eEEecCC-----------------CCeEEEEeecCCCCC
Confidence 0 13457789998 899999999999999997762 211 2222110 11335567888887
Q ss_pred EEEEEE----eCCcEEEEEecCCc
Q 003087 303 ILILAR----KSSIITMIDVLSGL 322 (849)
Q Consensus 303 ~la~a~----~dgti~lwdl~~~~ 322 (849)
.++.+. ..++|.+||+.+++
T Consensus 376 ~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 376 DAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp EEEEEEEETTEEEEEEEEETTTCC
T ss_pred EEEEEEcCCCCCCEEEEEECCCCc
Confidence 455333 34689999998876
No 182
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.33 E-value=7.1e-11 Score=142.60 Aligned_cols=246 Identities=12% Similarity=0.023 Sum_probs=142.7
Q ss_pred cCCCCeEEEEe-C-C--eEEEEecCCCCCcceeeeee----cC-CCCEEEEEECCCCCEEEEEeCCC-----cEEEEecC
Q 003087 19 SPRGERVAVAA-V-N--QVTILQKDDDYQEPCGIFNC----TG-LGASIYGAWSESHDVLGIVDDTH-----TVYFFKAN 84 (849)
Q Consensus 19 SPdG~~LAsas-~-~--~i~iw~~~~~~~~~~~~~~~----~~-~~~v~~vafSPDG~~LAs~~~dg-----tIrlWd~~ 84 (849)
+|||++++... + + .-.||......+.....+.. .+ ...+..++|||||++||.+++++ +|++||+.
T Consensus 80 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~ 159 (710)
T 2xdw_A 80 FKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVD 159 (710)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETT
T ss_pred EEECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECC
Confidence 39999998774 2 2 23566543221222111111 11 12467999999999999876644 89999998
Q ss_pred CccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCc----------------EEEEEecCCCCcccccccc
Q 003087 85 GEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGF----------------LHQIEISQDPSASISSASA 148 (849)
Q Consensus 85 g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~----------------v~lw~~~~~~~~~~~~~~~ 148 (849)
+.+........ ..+.+++|+||+.. |+..+.++. |.+|++.++......
T Consensus 160 tg~~~~~~~~~----~~~~~~~wspDg~~-------l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~---- 224 (710)
T 2xdw_A 160 GAKELPDVLER----VKFSCMAWTHDGKG-------MFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDIL---- 224 (710)
T ss_dssp TTEEEEEEEEE----ECSCCEEECTTSSE-------EEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEE----
T ss_pred CCCCCcccccC----cccceEEEEeCCCE-------EEEEEECCccccccccccccCCCCEEEEEECCCCcccceE----
Confidence 65544332211 12456788886642 444455554 999998776532110
Q ss_pred cCCcceecc-ccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecC------Cc-Ccccceecccccee
Q 003087 149 SSSGLTLRR-QFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCH------NL-ELEQLYTTQIEGLY 220 (849)
Q Consensus 149 ~~~~~~l~~-~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~------~~-~~~~l~~~~~~~~~ 220 (849)
.+.+ .++..+.+++|||||+.|+.++..++ . ....|.+|++.+ +. ....+.
T Consensus 225 -----v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~-------~-~~~~l~~~d~~~~~~~~~~~~~~~~l~-------- 283 (710)
T 2xdw_A 225 -----CAEFPDEPKWMGGAELSDDGRYVLLSIREGC-------D-PVNRLWYCDLQQESNGITGILKWVKLI-------- 283 (710)
T ss_dssp -----EECCTTCTTCEEEEEECTTSCEEEEEEECSS-------S-SCCEEEEEEGGGSSSSSCSSCCCEEEE--------
T ss_pred -----EeccCCCCeEEEEEEEcCCCCEEEEEEEccC-------C-CccEEEEEECcccccccCCccceEEee--------
Confidence 0111 12345789999999999988776431 0 012488888875 21 111121
Q ss_pred eccCCCccccccceEEEccCCCEEEEEeCCC----cEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEE
Q 003087 221 CEPKGHEVQLAHPKVLISPQGKFVATSDTNG----CLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDF 296 (849)
Q Consensus 221 ~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dg----tv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v 296 (849)
+ +...+.. .|||||+.|+..+..+ .|.+|++.+... ..|. .+.+. .....+.++
T Consensus 284 ----~--~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~--~~~~-----------~l~~~--~~~~~~~~~ 341 (710)
T 2xdw_A 284 ----D--NFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEE--SKWK-----------VLVPE--HEKDVLEWV 341 (710)
T ss_dssp ----C--SSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCG--GGCE-----------EEECC--CSSCEEEEE
T ss_pred ----C--CCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCc--ccce-----------eccCC--CCCCeEEEE
Confidence 1 2334443 5999999988776543 599999887531 1121 11111 001246778
Q ss_pred EEecCCEE-EEEEeCCc--EEEEEecCCc
Q 003087 297 AWWSDNIL-ILARKSSI--ITMIDVLSGL 322 (849)
Q Consensus 297 aws~D~~l-a~a~~dgt--i~lwdl~~~~ 322 (849)
+|++++.+ ++++.+|. |.+|++.+++
T Consensus 342 ~~~~~~~lv~~~~~~g~~~l~~~~~~~g~ 370 (710)
T 2xdw_A 342 ACVRSNFLVLCYLHDVKNTLQLHDLATGA 370 (710)
T ss_dssp EEETTTEEEEEEEETTEEEEEEEETTTCC
T ss_pred EEEcCCEEEEEEEECCEEEEEEEECCCCC
Confidence 99877765 45677885 5556765555
No 183
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.32 E-value=2.2e-10 Score=124.92 Aligned_cols=215 Identities=13% Similarity=0.083 Sum_probs=138.8
Q ss_pred cceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeee-------cC-CCCEEEEEECC-CCCEEEEEe-CCCcEE
Q 003087 11 KKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNC-------TG-LGASIYGAWSE-SHDVLGIVD-DTHTVY 79 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~-------~~-~~~v~~vafSP-DG~~LAs~~-~dgtIr 79 (849)
..+..|+|+|||+++++.+ +++|.+|+..+... .+..+.. .+ ......|+|+| +|+++++.+ .++.|+
T Consensus 91 ~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~-~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~ 169 (329)
T 3fvz_A 91 YLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEG-PLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIV 169 (329)
T ss_dssp SSEEEEEECTTSCEEEEETTTTEEEEECTTCSSC-CSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEE
T ss_pred CCceEEEECCCCCEEEEECCCCEEEEEeCCCCeE-EEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEE
Confidence 5788999999999888776 57899998654210 1222210 01 22568999999 899999886 799999
Q ss_pred EEecCCccceecccccc------cccccEEEEEecCC-cccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCc
Q 003087 80 FFKANGEEITRFTNKHL------KVSLPIIGLIAQDE-TDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSG 152 (849)
Q Consensus 80 lWd~~g~~~~~l~~~~~------~~~~~V~~l~fs~~-~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~ 152 (849)
+|+.+|+.+..+..... ..-....+|+|+|+ +.. +++-..++.|++|+..++.....+.
T Consensus 170 ~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l-------~v~d~~~~~I~~~~~~~G~~~~~~~------- 235 (329)
T 3fvz_A 170 QFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQL-------CVADRENGRIQCFKTDTKEFVREIK------- 235 (329)
T ss_dssp EECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEE-------EEEETTTTEEEEEETTTCCEEEEEC-------
T ss_pred EEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEE-------EEEECCCCEEEEEECCCCcEEEEEe-------
Confidence 99988887666532110 00123678998775 322 2223578899999987665533221
Q ss_pred ceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCcccccc
Q 003087 153 LTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAH 232 (849)
Q Consensus 153 ~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V 232 (849)
.. .+...+.+++|+| |.++++.|.. + +...+...|.+|+..++. .+. .+....+ +....
T Consensus 236 --~~-~~~~~~~~~~~~p-g~~~~~~g~~-----~-v~~~~~~~v~~~~~~~g~---~~~------~~~~~~~--~~~~p 294 (329)
T 3fvz_A 236 --HA-SFGRNVFAISYIP-GFLFAVNGKP-----Y-FGDQEPVQGFVMNFSSGE---IID------VFKPVRK--HFDMP 294 (329)
T ss_dssp --CT-TTTTCEEEEEEET-TEEEEEECCC-----C-TTCSCCCCEEEEETTTCC---EEE------EECCSSS--CCSSE
T ss_pred --cc-ccCCCcceeeecC-CEEEEeCCCE-----E-eccCCCcEEEEEEcCCCe---EEE------EEcCCCC--ccCCe
Confidence 01 2234689999999 6655554322 1 111222348899876542 111 1111112 45677
Q ss_pred ceEEEccCCCEEEEEeCCCcEEEEecCCC
Q 003087 233 PKVLISPQGKFVATSDTNGCLYIFEMDKD 261 (849)
Q Consensus 233 ~~vafSPDG~~LAs~s~Dgtv~LWd~~~~ 261 (849)
..|+|+|||+++++...+++|++|++.+.
T Consensus 295 ~~ia~~~dG~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 295 HDIVASEDGTVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp EEEEECTTSEEEEEESSSCCEEEEEEEEC
T ss_pred eEEEECCCCCEEEEECCCCEEEEEeCCcc
Confidence 89999999999999999999999998753
No 184
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.30 E-value=8.6e-11 Score=127.18 Aligned_cols=248 Identities=10% Similarity=0.034 Sum_probs=150.3
Q ss_pred cceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCCccce
Q 003087 11 KKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANGEEIT 89 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~~~~ 89 (849)
..|.+|+|+|++..+++.+ ++.++.|.. .+...+. .+.....+++|+|||++++++..++.|++||..+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~-~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~ 79 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTITA-----EPWLEIS-KKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIK 79 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEEC-----EEEEEEE-SSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE
T ss_pred cccceeeecCCccceeEEeecccCccccc-----ceeEEEe-ccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEE
Confidence 3578999999999988764 567788831 2222222 23456789999999998889999999999999865544
Q ss_pred ecccccccccccEEEEEecCCcccccccceeEEEEe-CC----CcEEEEEecCCCCcccccccccCCcceeccccCCceE
Q 003087 90 RFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFT-SD----GFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVI 164 (849)
Q Consensus 90 ~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s-~D----g~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~ 164 (849)
.+...+ ...+.+++|++++. +.+++ .+ +.|.+|+..++....... .......++
T Consensus 80 ~~~~~~---~~~~~~i~~~~dg~--------l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~----------~~~~~~~~~ 138 (333)
T 2dg1_A 80 RPFVSH---KANPAAIKIHKDGR--------LFVCYLGDFKSTGGIFAATENGDNLQDIIE----------DLSTAYCID 138 (333)
T ss_dssp EEEECS---SSSEEEEEECTTSC--------EEEEECTTSSSCCEEEEECTTSCSCEEEEC----------SSSSCCCEE
T ss_pred EEeeCC---CCCcceEEECCCCc--------EEEEeCCCCCCCceEEEEeCCCCEEEEEEc----------cCccCCccc
Confidence 443111 24588999987653 22223 33 578889876554321111 001123589
Q ss_pred EEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCc-CcccceeccccceeeccCCCccccccceEEEccCCCE
Q 003087 165 CTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNL-ELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKF 243 (849)
Q Consensus 165 svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~-~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~ 243 (849)
+++++|+|+++++...+.. ..+ ...+|.++... ....+.. +...+..++|+|||+.
T Consensus 139 ~i~~d~~g~l~v~~~~~~~-------~~~--~~~l~~~~~~~~~~~~~~~--------------~~~~~~~i~~~~dg~~ 195 (333)
T 2dg1_A 139 DMVFDSKGGFYFTDFRGYS-------TNP--LGGVYYVSPDFRTVTPIIQ--------------NISVANGIALSTDEKV 195 (333)
T ss_dssp EEEECTTSCEEEEECCCBT-------TBC--CEEEEEECTTSCCEEEEEE--------------EESSEEEEEECTTSSE
T ss_pred ceEECCCCCEEEEeccccc-------cCC--CceEEEEeCCCCEEEEeec--------------CCCcccceEECCCCCE
Confidence 9999999998876543210 001 13566665321 1111110 1224668999999996
Q ss_pred EEE-EeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCEEEEEE-eCCcEEEEEec
Q 003087 244 VAT-SDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNILILAR-KSSIITMIDVL 319 (849)
Q Consensus 244 LAs-~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~la~a~-~dgti~lwdl~ 319 (849)
|.. .+.++.|.+|++.+....+..+... ....+. .+ ..+..+++.+||.+.++. .++.|.+||..
T Consensus 196 l~v~~~~~~~i~~~d~~~~g~~~~~~~~~------~~~~~~----~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~ 262 (333)
T 2dg1_A 196 LWVTETTANRLHRIALEDDGVTIQPFGAT------IPYYFT----GH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKR 262 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSSSEEEEEEE------EEEECC----SS-SEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred EEEEeCCCCeEEEEEecCCCcCcccccce------EEEecC----CC-CCCCceEECCCCCEEEEEcCCCEEEEECCC
Confidence 654 4568999999996421112221100 000001 11 246779999999876654 56899999974
No 185
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.24 E-value=5e-10 Score=135.95 Aligned_cols=243 Identities=11% Similarity=0.015 Sum_probs=146.6
Q ss_pred ceEEEEEcCCCCeEEEEeC------CeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCc--------
Q 003087 12 KQVSLFISPRGERVAVAAV------NQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHT-------- 77 (849)
Q Consensus 12 ~v~slafSPdG~~LAsas~------~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgt-------- 77 (849)
.+.+++|||||++||.+++ .+|.+|+..++. .... ... ...+..++|||| +.|+.++.+++
T Consensus 164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~--~~~~-~~~-~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~ 238 (741)
T 1yr2_A 164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGK--PLAD-ELK-WVKFSGLAWLGN-DALLYSRFAEPKEGQAFQA 238 (741)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCC--EEEE-EEE-EEESCCCEESTT-SEEEEEECCCC--------
T ss_pred EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCC--CCCc-cCC-CceeccEEEECC-CEEEEEEecCccccccccc
Confidence 5778999999999998853 268899987542 2211 111 111247899999 99999887765
Q ss_pred ------EEEEecCCccc--eecccccccccccEEEEEecCCcccccccceeEEEEeC-----CCcEEEEEecCC--C-Cc
Q 003087 78 ------VYFFKANGEEI--TRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTS-----DGFLHQIEISQD--P-SA 141 (849)
Q Consensus 78 ------IrlWd~~g~~~--~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~-----Dg~v~lw~~~~~--~-~~ 141 (849)
|++|++.+... ..+.... .....+.++.|+||+.. +++.+. +..|.+|++.++ . ..
T Consensus 239 ~~~~~~v~~~~lgt~~~~~~lv~~~~-~~~~~~~~~~~SpDG~~-------l~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 310 (741)
T 1yr2_A 239 LNYNQTVWLHRLGTPQSADQPVFATP-ELPKRGHGASVSSDGRW-------VVITSSEGTDPVNTVHVARVTNGKIGPVT 310 (741)
T ss_dssp CCCCCEEEEEETTSCGGGCEEEECCT-TCTTCEEEEEECTTSCE-------EEEEEECTTCSCCEEEEEEEETTEECCCE
T ss_pred CCCCCEEEEEECCCCchhCEEEeccC-CCCeEEEEEEECCCCCE-------EEEEEEccCCCcceEEEEECCCCCCcccE
Confidence 88999853321 1111111 11124778899987643 222232 347899998765 3 21
Q ss_pred ccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCc-Ccccceecccccee
Q 003087 142 SISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNL-ELEQLYTTQIEGLY 220 (849)
Q Consensus 142 ~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~-~~~~l~~~~~~~~~ 220 (849)
.+..+. ..+.... +|||+.|+..++++. ....|.+|++.++. ..+.+.
T Consensus 311 ------------~l~~~~-~~~~~~~-~~dg~~l~~~s~~~~---------~~~~l~~~d~~~~~~~~~~l~-------- 359 (741)
T 1yr2_A 311 ------------ALIPDL-KAQWDFV-DGVGDQLWFVSGDGA---------PLKKIVRVDLSGSTPRFDTVV-------- 359 (741)
T ss_dssp ------------EEECSS-SSCEEEE-EEETTEEEEEECTTC---------TTCEEEEEECSSSSCEEEEEE--------
T ss_pred ------------EecCCC-CceEEEE-eccCCEEEEEECCCC---------CCCEEEEEeCCCCccccEEEe--------
Confidence 122222 2344443 499999988876541 12247778776531 111221
Q ss_pred eccCCCccccccceEEEccCCCEEEEEeCCCcEEEEecCC-CcccccccccccccccccccccCCCCCCCCCCcEEEEEe
Q 003087 221 CEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDK-DNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWW 299 (849)
Q Consensus 221 ~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~-~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws 299 (849)
.+ +...+..++|+ +++++++...||..+||.++. ++. ++.+.. .....+..++|+
T Consensus 360 ---~~--~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~-~~~l~~-----------------~~~~~v~~~~~s 415 (741)
T 1yr2_A 360 ---PE--SKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKP-AGAVSL-----------------PGIGSASGLSGR 415 (741)
T ss_dssp ---CC--CSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCE-EEECBC-----------------SSSCEEEEEECC
T ss_pred ---cC--CCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCc-eeeccC-----------------CCCeEEEEeecC
Confidence 11 33356678887 788899999999999987652 211 222211 012347788999
Q ss_pred cCCE-EEEEE----eCCcEEEEEecCCc
Q 003087 300 SDNI-LILAR----KSSIITMIDVLSGL 322 (849)
Q Consensus 300 ~D~~-la~a~----~dgti~lwdl~~~~ 322 (849)
||+. ++.+. ..++|.+||+.+++
T Consensus 416 ~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 416 PGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp BTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred CCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 9874 55332 34689999998876
No 186
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.23 E-value=2.2e-10 Score=137.99 Aligned_cols=242 Identities=9% Similarity=-0.034 Sum_probs=137.1
Q ss_pred EcCCCCeEEEEe-C-C--eEEEEecCCCCCcceeeee-e----cC-CCCEEEEEECCCCCEEE-----EEeCCCcEEEEe
Q 003087 18 ISPRGERVAVAA-V-N--QVTILQKDDDYQEPCGIFN-C----TG-LGASIYGAWSESHDVLG-----IVDDTHTVYFFK 82 (849)
Q Consensus 18 fSPdG~~LAsas-~-~--~i~iw~~~~~~~~~~~~~~-~----~~-~~~v~~vafSPDG~~LA-----s~~~dgtIrlWd 82 (849)
.+|||++++... + + .-.||......+... .+. . .+ ...+..++|||||++|| +|+.+.+|++||
T Consensus 75 p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~d 153 (695)
T 2bkl_A 75 PSRRNGRFFYVRTHKDKEKAILYWRQGESGQEK-VLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVID 153 (695)
T ss_dssp CEEETTEEEEEEECTTCSSCEEEEEESTTSCCE-EEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEE
T ss_pred CEEECCEEEEEEEcCCCeEEEEEEEcCCCCCcE-EEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEE
Confidence 459999999875 2 2 456775432112221 222 1 11 22468999999999999 444567899999
Q ss_pred cCCccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCc-------------EEEEEecCCCCccccccccc
Q 003087 83 ANGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGF-------------LHQIEISQDPSASISSASAS 149 (849)
Q Consensus 83 ~~g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~-------------v~lw~~~~~~~~~~~~~~~~ 149 (849)
+.+.+.... .+.... ...+++|+||+.. |+..+.|+. |.+|++.++......-
T Consensus 154 l~tg~~~~~-~~~~~~--~~~~~~wspDg~~-------l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv---- 219 (695)
T 2bkl_A 154 VDSGEWSKV-DVIEGG--KYATPKWTPDSKG-------FYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVV---- 219 (695)
T ss_dssp TTTCCBCSS-CCBSCC--TTCCCEECTTSSE-------EEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEE----
T ss_pred CCCCCCcCC-cccCcc--cccceEEecCCCE-------EEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEE----
Confidence 986553311 111110 1146778886642 444456655 9999998765321100
Q ss_pred CCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccc
Q 003087 150 SSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQ 229 (849)
Q Consensus 150 ~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~ 229 (849)
+... .++..+.+++|||||+.|++++.+++ +...|.+|+..++ ....+.. +.
T Consensus 220 ---~~~~-~~~~~~~~~~~SpDG~~l~~~~~~~~---------~~~~l~~~~~~~~-~~~~l~~--------------~~ 271 (695)
T 2bkl_A 220 ---HERT-GDPTTFLQSDLSRDGKYLFVYILRGW---------SENDVYWKRPGEK-DFRLLVK--------------GV 271 (695)
T ss_dssp ---ECCC-CCTTCEEEEEECTTSCCEEEEEEETT---------TEEEEEEECTTCS-SCEEEEE--------------CS
T ss_pred ---EecC-CCCEEEEEEEECCCCCEEEEEEeCCC---------CceEEEEEcCCCC-ceEEeec--------------CC
Confidence 0111 22346899999999999988776641 1112444432221 1111211 23
Q ss_pred cccceEEEccCCCEEEEEe---CCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EE
Q 003087 230 LAHPKVLISPQGKFVATSD---TNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LI 305 (849)
Q Consensus 230 ~~V~~vafSPDG~~LAs~s---~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la 305 (849)
..+....+ |||+++++.+ .++.|.+|++.++.. ..|.. +.+. .....+.+++|+ ++. ++
T Consensus 272 ~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~--~~~~~-----------l~~~--~~~~~l~~~~~~-~~~lv~ 334 (695)
T 2bkl_A 272 GAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPAR--ASWKE-----------IVPE--DSSASLLSVSIV-GGHLSL 334 (695)
T ss_dssp SCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSG--GGCEE-----------EECC--CSSCEEEEEEEE-TTEEEE
T ss_pred CceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCc--cCCeE-----------EecC--CCCCeEEEEEEE-CCEEEE
Confidence 45556666 7787555444 258999999976532 11211 1111 012346778887 555 56
Q ss_pred EEEeCCcEEEEEec
Q 003087 306 LARKSSIITMIDVL 319 (849)
Q Consensus 306 ~a~~dgti~lwdl~ 319 (849)
+.+.||..+||.+.
T Consensus 335 ~~~~dg~~~l~~~~ 348 (695)
T 2bkl_A 335 EYLKDATSEVRVAT 348 (695)
T ss_dssp EEEETTEEEEEEEE
T ss_pred EEEECCEEEEEEEe
Confidence 77899998888775
No 187
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.20 E-value=1e-09 Score=133.31 Aligned_cols=241 Identities=11% Similarity=0.042 Sum_probs=137.7
Q ss_pred EcCCCCeEEEEe-C-C--eEEEEecCCC---CCcceeeeee----cC-CCCEEEEEECCCCCEEEEEeCC-----CcEEE
Q 003087 18 ISPRGERVAVAA-V-N--QVTILQKDDD---YQEPCGIFNC----TG-LGASIYGAWSESHDVLGIVDDT-----HTVYF 80 (849)
Q Consensus 18 fSPdG~~LAsas-~-~--~i~iw~~~~~---~~~~~~~~~~----~~-~~~v~~vafSPDG~~LAs~~~d-----gtIrl 80 (849)
.+|||++++... + + ...||..... .+.....+.. .+ ...+..++|||||++||.++++ .+|++
T Consensus 114 p~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v 193 (741)
T 1yr2_A 114 PQRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKF 193 (741)
T ss_dssp CEEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEE
T ss_pred CEEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEE
Confidence 359999999875 2 2 3567764321 1121111111 11 1246789999999999987654 46999
Q ss_pred EecCCccceecccccccccccEEEEEecCCcccccccceeEEEEeCCC--------------cEEEEEecCCCCcccccc
Q 003087 81 FKANGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDG--------------FLHQIEISQDPSASISSA 146 (849)
Q Consensus 81 Wd~~g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg--------------~v~lw~~~~~~~~~~~~~ 146 (849)
||+.+.+........ ..+.+++|+|| .. |+..+.|+ .|.+|++.++......
T Consensus 194 ~dl~tg~~~~~~~~~----~~~~~~~wspD-~~-------l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~l-- 259 (741)
T 1yr2_A 194 VGVADGKPLADELKW----VKFSGLAWLGN-DA-------LLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQP-- 259 (741)
T ss_dssp EETTTCCEEEEEEEE----EESCCCEESTT-SE-------EEEEECCCC--------CCCCCEEEEEETTSCGGGCEE--
T ss_pred EECCCCCCCCccCCC----ceeccEEEECC-CE-------EEEEEecCcccccccccCCCCCEEEEEECCCCchhCEE--
Confidence 999865543321111 11235667776 32 33334444 3888888765432110
Q ss_pred cccCCcceecc-ccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCc-C-cccceeccccceeecc
Q 003087 147 SASSSGLTLRR-QFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNL-E-LEQLYTTQIEGLYCEP 223 (849)
Q Consensus 147 ~~~~~~~~l~~-~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~-~-~~~l~~~~~~~~~~~~ 223 (849)
.+.. .++..+.++.|||||+.|+.++.+++ .+...|.+|++.++. . ...+..
T Consensus 260 -------v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~--------~~~~~l~~~d~~~~~~~~~~~l~~---------- 314 (741)
T 1yr2_A 260 -------VFATPELPKRGHGASVSSDGRWVVITSSEGT--------DPVNTVHVARVTNGKIGPVTALIP---------- 314 (741)
T ss_dssp -------EECCTTCTTCEEEEEECTTSCEEEEEEECTT--------CSCCEEEEEEEETTEECCCEEEEC----------
T ss_pred -------EeccCCCCeEEEEEEECCCCCEEEEEEEccC--------CCcceEEEEECCCCCCcccEEecC----------
Confidence 0111 12235889999999999988776541 012258889887641 1 222211
Q ss_pred CCCccccccceEEEccCCCEEEEEeCC----CcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEe
Q 003087 224 KGHEVQLAHPKVLISPQGKFVATSDTN----GCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWW 299 (849)
Q Consensus 224 ~g~~h~~~V~~vafSPDG~~LAs~s~D----gtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws 299 (849)
+...+... ++|||+.|+..+.+ +.|.+|++.+.. ..+. .+.++ +...+.+++|.
T Consensus 315 ----~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~---~~~~-----------~l~~~---~~~~l~~~~~~ 372 (741)
T 1yr2_A 315 ----DLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGST---PRFD-----------TVVPE---SKDNLESVGIA 372 (741)
T ss_dssp ----SSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSS---CEEE-----------EEECC---CSSEEEEEEEE
T ss_pred ----CCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCc---cccE-----------EEecC---CCCeEEEEEEE
Confidence 22334444 45999999988764 459999987641 0111 01111 12235678887
Q ss_pred cCCEEEEEEeCCcEEEEEec
Q 003087 300 SDNILILARKSSIITMIDVL 319 (849)
Q Consensus 300 ~D~~la~a~~dgti~lwdl~ 319 (849)
.+..+++++.||..+||.+.
T Consensus 373 ~~~lv~~~~~dg~~~l~~~~ 392 (741)
T 1yr2_A 373 GNRLFASYIHDAKSQVLAFD 392 (741)
T ss_dssp BTEEEEEEEETTEEEEEEEE
T ss_pred CCEEEEEEEECCEEEEEEEe
Confidence 44345677889988888765
No 188
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.18 E-value=7.1e-09 Score=110.58 Aligned_cols=247 Identities=7% Similarity=0.030 Sum_probs=145.0
Q ss_pred ccceEEEEEcCCCCeEEE-------E-eCCeEEEEecCCCCCcceeeeee---c-CCCCEEEEEECCC-CCEEEEEeCCC
Q 003087 10 TKKQVSLFISPRGERVAV-------A-AVNQVTILQKDDDYQEPCGIFNC---T-GLGASIYGAWSES-HDVLGIVDDTH 76 (849)
Q Consensus 10 ~~~v~slafSPdG~~LAs-------a-s~~~i~iw~~~~~~~~~~~~~~~---~-~~~~v~~vafSPD-G~~LAs~~~dg 76 (849)
.....+++|+|||+++++ + .++.|.+|+..++ .. ..+.. . ....+..++|+|| |+++++... +
T Consensus 17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g--~~-~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~-~ 92 (314)
T 1pjx_A 17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTG--KK-TVICKPEVNGYGGIPAGCQCDRDANQLFVADMR-L 92 (314)
T ss_dssp CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTC--CE-EEEECCEETTEECCEEEEEECSSSSEEEEEETT-T
T ss_pred CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCC--cE-EEEEecccCCCCCCCceEEEecCCCcEEEEECC-C
Confidence 356789999999998887 3 4678999986443 11 11211 0 1246789999999 876666554 4
Q ss_pred cEEEEecCCccceec-cccc-ccccccEEEEEecCCcccccccceeEEEEe-CCC-------------cEEEEEecCCCC
Q 003087 77 TVYFFKANGEEITRF-TNKH-LKVSLPIIGLIAQDETDVQRSCLCSFTVFT-SDG-------------FLHQIEISQDPS 140 (849)
Q Consensus 77 tIrlWd~~g~~~~~l-~~~~-~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s-~Dg-------------~v~lw~~~~~~~ 140 (849)
.|.+||..|+. ..+ .... ......+.++++.+++. +.+.+ .++ .-.+|.+...+.
T Consensus 93 ~l~~~d~~g~~-~~~~~~~~~~~~~~~~~~i~~d~~g~--------l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~ 163 (314)
T 1pjx_A 93 GLLVVQTDGTF-EEIAKKDSEGRRMQGCNDCAFDYEGN--------LWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQ 163 (314)
T ss_dssp EEEEEETTSCE-EECCSBCTTSCBCBCCCEEEECTTSC--------EEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSC
T ss_pred CEEEEeCCCCE-EEEEeccCCCccccCCcCEEECCCCC--------EEEEecCcccccccccccccCCCCeEEEECCCCC
Confidence 78999988543 333 2211 11113467888877543 22222 221 133444432221
Q ss_pred cccccccccCCcceeccccCCceEEEEEc----CCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccc
Q 003087 141 ASISSASASSSGLTLRRQFPQNVICTDYH----PELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQI 216 (849)
Q Consensus 141 ~~~~~~~~~~~~~~l~~~~~~~V~svafs----Pdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~ 216 (849)
... +..+. ...+.++|+ |||+.|.++.... + .|..|+......+.. .
T Consensus 164 ~~~-----------~~~~~-~~~~~i~~~~~~d~dg~~l~v~~~~~----------~--~i~~~~~~~~g~~~~---~-- 214 (314)
T 1pjx_A 164 MIQ-----------VDTAF-QFPNGIAVRHMNDGRPYQLIVAETPT----------K--KLWSYDIKGPAKIEN---K-- 214 (314)
T ss_dssp EEE-----------EEEEE-SSEEEEEEEECTTSCEEEEEEEETTT----------T--EEEEEEEEETTEEEE---E--
T ss_pred EEE-----------eccCC-CCcceEEEecccCCCCCEEEEEECCC----------C--eEEEEECCCCCcccc---c--
Confidence 111 11111 236889999 9998766654332 1 378888762110000 0
Q ss_pred cceeeccCCCccc-cccceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEE
Q 003087 217 EGLYCEPKGHEVQ-LAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITD 295 (849)
Q Consensus 217 ~~~~~~~~g~~h~-~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~ 295 (849)
..+....+ +. .....++++|||++.++...++.|..|+..+++. +..+.. +...+.+
T Consensus 215 -~~~~~~~~--~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~-~~~~~~------------------~~~~~~~ 272 (314)
T 1pjx_A 215 -KVWGHIPG--THEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQP-KMRIRC------------------PFEKPSN 272 (314)
T ss_dssp -EEEEECCC--CSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSC-SEEEEC------------------SSSCEEE
T ss_pred -eEEEECCC--CCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcE-eEEEeC------------------CCCCcee
Confidence 01111112 22 3567899999999999888899999999885432 222211 1145789
Q ss_pred EEEecCCE-EEEEE-eCCcEEEEEecC
Q 003087 296 FAWWSDNI-LILAR-KSSIITMIDVLS 320 (849)
Q Consensus 296 vaws~D~~-la~a~-~dgti~lwdl~~ 320 (849)
++|.+|+. |.++. .+|.|..+++..
T Consensus 273 i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 273 LHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 99999987 65554 557899999865
No 189
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.18 E-value=5.8e-10 Score=118.91 Aligned_cols=213 Identities=7% Similarity=-0.018 Sum_probs=129.2
Q ss_pred CCCEEEEEECCCCC-EEEEEeCCCcEEEEecCCccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEE
Q 003087 54 LGASIYGAWSESHD-VLGIVDDTHTVYFFKANGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQ 132 (849)
Q Consensus 54 ~~~v~~vafSPDG~-~LAs~~~dgtIrlWd~~g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~l 132 (849)
.....+++|+|||+ +++++..++.|+.|+..+. ...+... ...+.+++|++++.. ++....++.|.+
T Consensus 27 ~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~~~~~~----~~~~~~l~~~~dg~l-------~v~~~~~~~i~~ 94 (296)
T 3e5z_A 27 FTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LSPEMHP----SHHQNGHCLNKQGHL-------IACSHGLRRLER 94 (296)
T ss_dssp CSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EEEEESS----CSSEEEEEECTTCCE-------EEEETTTTEEEE
T ss_pred CccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eEEEECC----CCCcceeeECCCCcE-------EEEecCCCeEEE
Confidence 34567899999999 8888889999999999876 4444322 135788999876542 112234678999
Q ss_pred EEecCCCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccc----cCCCCCCceeeEEEecCCcCc
Q 003087 133 IEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLT----SSGNSGPCCISLWRRCHNLEL 208 (849)
Q Consensus 133 w~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~----~~~~~G~~~I~lW~~~~~~~~ 208 (849)
|+..++....... ...+.....++.++++|+|+++++.+..++...+ .....+. -.+|+++.....
T Consensus 95 ~d~~~g~~~~~~~--------~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~--~~l~~~~~~g~~ 164 (296)
T 3e5z_A 95 QREPGGEWESIAD--------SFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPG--RWVFRLAPDGTL 164 (296)
T ss_dssp ECSTTCCEEEEEC--------EETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSS--CEEEEECTTSCE
T ss_pred EcCCCCcEEEEee--------ccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCC--cEEEEECCCCCE
Confidence 9986665432211 0111112347889999999988864211110000 0000011 256776543111
Q ss_pred ccceeccccceeeccCCCccccccceEEEccCCCEEEEEeCCCcEEEEecCCCcccc-cccccccccccccccccCCCCC
Q 003087 209 EQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSL-SKFACGERFDLQVADSLFDGRT 287 (849)
Q Consensus 209 ~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l-~~~~~~~~~~~~~~~~l~~~~~ 287 (849)
..+. + +......++|||||++|++.+.++.|.+|++..... + .... .+ .
T Consensus 165 ~~~~------------~--~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~-~~~~~~-----------~~-~--- 214 (296)
T 3e5z_A 165 SAPI------------R--DRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGE-TEYQGV-----------HF-T--- 214 (296)
T ss_dssp EEEE------------C--CCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSC-EEEEEE-----------EE-C---
T ss_pred EEee------------c--CCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCc-CcCCCe-----------Ee-e---
Confidence 1110 1 233557899999999997777889999999972211 1 0000 00 0
Q ss_pred CCCCCcEEEEEecCCEEEEEEeCCcEEEEEec
Q 003087 288 KPISDITDFAWWSDNILILARKSSIITMIDVL 319 (849)
Q Consensus 288 ~~~~~v~~vaws~D~~la~a~~dgti~lwdl~ 319 (849)
.....+..+++.+||.+.++. ++.|.+|+..
T Consensus 215 ~~~~~p~~i~~d~~G~l~v~~-~~~v~~~~~~ 245 (296)
T 3e5z_A 215 VEPGKTDGLRVDAGGLIWASA-GDGVHVLTPD 245 (296)
T ss_dssp CSSSCCCSEEEBTTSCEEEEE-TTEEEEECTT
T ss_pred CCCCCCCeEEECCCCCEEEEc-CCeEEEECCC
Confidence 011234568999999887777 8999999976
No 190
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.17 E-value=6.3e-10 Score=123.28 Aligned_cols=233 Identities=9% Similarity=0.051 Sum_probs=134.8
Q ss_pred ceEEEEEcCCCCeEEEEe---CCeEEEEecCCCCCcceee-eeecCCCCEEEEEECCCC-CEEEEEeCCCcEEEEecC--
Q 003087 12 KQVSLFISPRGERVAVAA---VNQVTILQKDDDYQEPCGI-FNCTGLGASIYGAWSESH-DVLGIVDDTHTVYFFKAN-- 84 (849)
Q Consensus 12 ~v~slafSPdG~~LAsas---~~~i~iw~~~~~~~~~~~~-~~~~~~~~v~~vafSPDG-~~LAs~~~dgtIrlWd~~-- 84 (849)
....++|||||++|.++. +++|.+||.... +.+.. .. .+....+.+.|+| ..+++.+.||++.+|+..
T Consensus 109 ~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~--~~~~~~i~---~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~ 183 (361)
T 2oiz_A 109 YDGLFRQTTDGKFIVLQNASPATSIGIVDVAKG--DYVEDVTA---AAGCWSVIPQPNRPRSFMTICGDGGLLTINLGED 183 (361)
T ss_dssp CGGGEEECTTSSEEEEEEESSSEEEEEEETTTT--EEEEEEGG---GTTEEEEEECTTSSSEEEEEETTSSEEEEEECTT
T ss_pred CcceEEECCCCCEEEEECCCCCCeEEEEECCCC--cEEEEEec---CCCcceeEEcCCCCeeEEEECCCCcEEEEEECCC
Confidence 356799999999998874 468999997643 33333 22 1223346788887 677888999999999874
Q ss_pred Cccceeccc-ccccc-cccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceec------
Q 003087 85 GEEITRFTN-KHLKV-SLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLR------ 156 (849)
Q Consensus 85 g~~~~~l~~-~~~~~-~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~------ 156 (849)
|+....... ..... ..++ .+.+++++ ..++..+.+|.|.++|+..+... ... .+++.
T Consensus 184 g~~~~~~~~~~~~~~~~~~~-~~~~~~~g-------~~~~~~~~~~~v~v~d~~~~~~~-~~~------~~~~~~~~~~~ 248 (361)
T 2oiz_A 184 GKVASQSRSKQMFSVKDDPI-FIAPALDK-------DKAHFVSYYGNVYSADFSGDEVK-VDG------PWSLLNDEDKA 248 (361)
T ss_dssp SSEEEEEECCCCSCTTTSCB-CSCCEECS-------SEEEEEBTTSEEEEEECSSSSCE-EEE------EEESCCHHHHH
T ss_pred CcEeeeccccceEcCCCCce-EEEecccC-------CEEEEEeCCCeEEEEEecCCCce-ecc------cccccCccccc
Confidence 443211100 00000 0011 11122221 13455578899999998754321 100 00000
Q ss_pred -cccCCceEEEEEcCCCceEEEEec-CCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccce
Q 003087 157 -RQFPQNVICTDYHPELSLLSVVSN-TDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPK 234 (849)
Q Consensus 157 -~~~~~~V~svafsPdg~lLas~g~-d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~ 234 (849)
+..+.+...++|||||+.+.++.. ++. ..+ .+.+...|.+||+.+.. .+.. + .. +. ++.
T Consensus 249 ~~~~p~g~~~~a~~~dg~~lyv~~~~~~~--~~~-~~~~~~~v~viD~~t~~---~v~~------i---~~--~~--p~~ 309 (361)
T 2oiz_A 249 KNWVPGGYNLVGLHRASGRMYVFMHPDGK--EGT-HKFPAAEIWVMDTKTKQ---RVAR------I---PG--RD--ALS 309 (361)
T ss_dssp TTCEECCSSCEEEETTTTEEEEEEESSCC--TTC-TTCCCSEEEEEETTTTE---EEEE------E---EC--TT--CCE
T ss_pred cccccCCeeEEEEecCCCeEEEEEccCCC--ccc-ccCCCceEEEEECCCCc---EEEE------E---ec--CC--eeE
Confidence 001122234799999998887654 220 000 01112358888877642 1111 1 11 33 889
Q ss_pred EEEccCCCEEEEEeCCCcEEEEecCCC--cccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE
Q 003087 235 VLISPQGKFVATSDTNGCLYIFEMDKD--NFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI 303 (849)
Q Consensus 235 vafSPDG~~LAs~s~Dgtv~LWd~~~~--~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~ 303 (849)
|+|||||++|++++. ++|.+||..++ +. ++.+. .....+..++++|||.
T Consensus 310 ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~-~~~i~------------------~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 310 MTIDQQRNLMLTLDG-GNVNVYDISQPEPKL-LRTIE------------------GAAEASLQVQFHPVGG 360 (361)
T ss_dssp EEEETTTTEEEEECS-SCEEEEECSSSSCEE-EEEET------------------TSCSSEEEEEECCCSC
T ss_pred EEECCCCCEEEEeCC-CeEEEEECCCCccee-eEEec------------------cCCCCcEEEEecCCCC
Confidence 999999999999987 99999999987 43 23321 0113467889999874
No 191
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.17 E-value=1.6e-08 Score=106.52 Aligned_cols=244 Identities=8% Similarity=0.001 Sum_probs=156.0
Q ss_pred cccCcccccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeee-ecCCCCEEEEEECCCCCEEEEEeCCCcEEE
Q 003087 3 LYRQPRKTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFN-CTGLGASIYGAWSESHDVLGIVDDTHTVYF 80 (849)
Q Consensus 3 ~~~~~~~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~-~~~~~~v~~vafSPDG~~LAs~~~dgtIrl 80 (849)
+|.-|.....+.+|+++|||++.++.. ++.|.+|+.. + . ...+. ......+..++++|||++.++...++.|..
T Consensus 7 ~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~--~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~ 82 (299)
T 2z2n_A 7 ELNLTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-G--K-ITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGR 82 (299)
T ss_dssp EEECCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-C--C-EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEE
T ss_pred EEcCCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-C--C-eEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEE
Confidence 344566667899999999999887765 5789999865 2 1 22222 112456889999999999998888899999
Q ss_pred EecCCccceecccccccccccEEEEEecCCcccccccceeEEEE-eCCCcEEEEEecCCCCcccccccccCCcceecccc
Q 003087 81 FKANGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVF-TSDGFLHQIEISQDPSASISSASASSSGLTLRRQF 159 (849)
Q Consensus 81 Wd~~g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~-s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~ 159 (849)
|+..|+. ..+.... ....+.++++.+++. +.+. ..++.|..|+. ++..... .+...
T Consensus 83 ~~~~g~~-~~~~~~~--~~~~~~~i~~~~~g~--------l~v~~~~~~~i~~~d~-~g~~~~~----------~~~~~- 139 (299)
T 2z2n_A 83 ITKKGII-KEYTLPN--PDSAPYGITEGPNGD--------IWFTEMNGNRIGRITD-DGKIREY----------ELPNK- 139 (299)
T ss_dssp ECTTSCE-EEEECSS--TTCCEEEEEECTTSC--------EEEEETTTTEEEEECT-TCCEEEE----------ECSST-
T ss_pred ECCCCcE-EEEeCCC--cCCCceeeEECCCCC--------EEEEecCCceEEEECC-CCCEEEe----------cCCCC-
Confidence 9988653 2222110 123577888876543 2222 34677888876 3332111 11111
Q ss_pred CCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEcc
Q 003087 160 PQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISP 239 (849)
Q Consensus 160 ~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSP 239 (849)
...+.+++++|+|++.++....+ .|..|+..+. ...+ . . .. +...+..++++|
T Consensus 140 ~~~~~~i~~~~~g~l~v~~~~~~-------------~i~~~~~~g~--~~~~-~--------~-~~--~~~~~~~i~~~~ 192 (299)
T 2z2n_A 140 GSYPSFITLGSDNALWFTENQNN-------------AIGRITESGD--ITEF-K--------I-PT--PASGPVGITKGN 192 (299)
T ss_dssp TCCEEEEEECTTSCEEEEETTTT-------------EEEEECTTCC--EEEE-E--------C-SS--TTCCEEEEEECT
T ss_pred CCCCceEEEcCCCCEEEEeCCCC-------------EEEEEcCCCc--EEEe-e--------C-CC--CCCcceeEEECC
Confidence 23589999999998876543332 2666665221 1111 0 0 01 223567899999
Q ss_pred CCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCEEEEEE-eCCcEEEEEe
Q 003087 240 QGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNILILAR-KSSIITMIDV 318 (849)
Q Consensus 240 DG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~la~a~-~dgti~lwdl 318 (849)
+|++.++...++.|..|+. ++.. ..+.. . .....+.++++.++|.+.++. .++.|.+||.
T Consensus 193 ~g~l~v~~~~~~~i~~~~~-~g~~--~~~~~------------~----~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 193 DDALWFVEIIGNKIGRITT-SGEI--TEFKI------------P----TPNARPHAITAGAGIDLWFTEWGANKIGRLTS 253 (299)
T ss_dssp TSSEEEEETTTTEEEEECT-TCCE--EEEEC------------S----STTCCEEEEEECSTTCEEEEETTTTEEEEEET
T ss_pred CCCEEEEccCCceEEEECC-CCcE--EEEEC------------C----CCCCCceeEEECCCCCEEEeccCCceEEEECC
Confidence 9999888777899999998 4422 22211 0 122457899999999876665 6789999997
Q ss_pred c
Q 003087 319 L 319 (849)
Q Consensus 319 ~ 319 (849)
.
T Consensus 254 ~ 254 (299)
T 2z2n_A 254 N 254 (299)
T ss_dssp T
T ss_pred C
Confidence 3
No 192
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.12 E-value=1.2e-08 Score=113.72 Aligned_cols=250 Identities=9% Similarity=-0.064 Sum_probs=141.7
Q ss_pred EEEEcCCCCeEEEEe-----------CCeEEEEecCCCCCcceeeeeec--C----CCCEEEEEECCCCCEEEEEeC--C
Q 003087 15 SLFISPRGERVAVAA-----------VNQVTILQKDDDYQEPCGIFNCT--G----LGASIYGAWSESHDVLGIVDD--T 75 (849)
Q Consensus 15 slafSPdG~~LAsas-----------~~~i~iw~~~~~~~~~~~~~~~~--~----~~~v~~vafSPDG~~LAs~~~--d 75 (849)
.++|||||++|.++. ++.|.++|... .+..+..... . ...-..++|||||++|.++.. +
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t--~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~ 147 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVT--FLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAG 147 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCC--CcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCC
Confidence 899999999998884 46788998753 2333333211 0 012247999999999998874 5
Q ss_pred CcEEEEecCC-cccee-cccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcc
Q 003087 76 HTVYFFKANG-EEITR-FTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGL 153 (849)
Q Consensus 76 gtIrlWd~~g-~~~~~-l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~ 153 (849)
++|.++| .+ +.+.+ +... . ++.+.|++.. .++..+.||.+..++. +++...... ...
T Consensus 148 ~~v~viD-~t~~~~~~~i~~~-----~---~~~~~~~~~~------~~~~~~~dg~~~~vd~-~g~~~~~~~----~~~- 206 (373)
T 2mad_H 148 PAVGLVV-QGGSSDDQLLSSP-----T---CYHIHPGAPS------TFYLLCAQGGLAKTDH-AGGAAGAGL----VGA- 206 (373)
T ss_pred CeEEEEE-CCCCEEeEEcCCC-----c---eEEEEeCCCc------eEEEEcCCCCEEEEEC-CCcEEEEEe----ccc-
Confidence 7899999 74 44434 3211 1 1233332211 2444578999999998 655431110 000
Q ss_pred eeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccc-eeeccCCCcccccc
Q 003087 154 TLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEG-LYCEPKGHEVQLAH 232 (849)
Q Consensus 154 ~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~-~~~~~~g~~h~~~V 232 (849)
.+.+..+ .....+|++++..++..+..++ +.+.|+.+.. ...+....... ....... ...+.
T Consensus 207 ~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~-------------v~vid~~~~~-~~v~~~~~~~~~~~~~~~~--~p~g~ 269 (373)
T 2mad_H 207 MLTAAQN-LLTQPAQANKSGRIVWPVYSGK-------------ILQADISAAG-ATNKAPIDALSGGRKADTW--RPGGW 269 (373)
T ss_pred cccCCcc-eeecceeEecCCEEEEEcCCce-------------EEEEeccCCc-ceEeeeeeecCCcccccce--ecCce
Confidence 0011111 1234678888765555444431 4555554321 00000000000 0000000 11234
Q ss_pred ceEEEccCCCEEEEEeC----------CCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCC
Q 003087 233 PKVLISPQGKFVATSDT----------NGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDN 302 (849)
Q Consensus 233 ~~vafSPDG~~LAs~s~----------Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~ 302 (849)
.-++|+|||+.|..+.. ++.|.+.|+.+.+. ++.++. ...+..++|+|||
T Consensus 270 ~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~v-v~~i~~-------------------g~~p~~i~~s~Dg 329 (373)
T 2mad_H 270 QQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQT-SSQISL-------------------GHDVDAISVAQDG 329 (373)
T ss_pred EeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEE-EEEEEC-------------------CCCcCeEEECCCC
Confidence 45899999999887653 45799999987754 344431 1236889999998
Q ss_pred E-E-EEEE-eCCcEEEEEecCCccc
Q 003087 303 I-L-ILAR-KSSIITMIDVLSGLKV 324 (849)
Q Consensus 303 ~-l-a~a~-~dgti~lwdl~~~~~l 324 (849)
+ + .++. .+++|.++|+.+++.+
T Consensus 330 ~~~l~v~~~~~~~V~ViD~~t~~vv 354 (373)
T 2mad_H 330 GPDLYALSAGTEVLHIYDAGAGDQD 354 (373)
T ss_pred CeEEEEEcCCCCeEEEEECCCCCEE
Confidence 7 4 4555 4899999999998854
No 193
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.12 E-value=2.9e-08 Score=104.51 Aligned_cols=239 Identities=8% Similarity=-0.022 Sum_probs=150.7
Q ss_pred ccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeec-CCCCEEEEEECCCCCEEEEEeCCCcEEEEecCCcc
Q 003087 10 TKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCT-GLGASIYGAWSESHDVLGIVDDTHTVYFFKANGEE 87 (849)
Q Consensus 10 ~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~-~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~~ 87 (849)
...+.+++++|||++.++.. ++.|..|+... . ...+... ....+..++++|||++.++...++.|.+||.+|+.
T Consensus 56 ~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g---~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g~~ 131 (299)
T 2z2n_A 56 DAKVMCLTISSDGEVWFTENAANKIGRITKKG---I-IKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITDDGKI 131 (299)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTTS---C-EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTCCE
T ss_pred cCceeeEEECCCCCEEEeCCCCCeEEEECCCC---c-EEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECCCCCE
Confidence 35689999999999888775 57888887542 1 2222211 24467899999999999988888999999996654
Q ss_pred ceecccccccccccEEEEEecCCcccccccceeEEEE-eCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEE
Q 003087 88 ITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVF-TSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICT 166 (849)
Q Consensus 88 ~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~-s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~sv 166 (849)
........ ...+.++++.+++. +.+. ..++.|..|+. ++..... .+... ...+.++
T Consensus 132 ~~~~~~~~---~~~~~~i~~~~~g~--------l~v~~~~~~~i~~~~~-~g~~~~~----------~~~~~-~~~~~~i 188 (299)
T 2z2n_A 132 REYELPNK---GSYPSFITLGSDNA--------LWFTENQNNAIGRITE-SGDITEF----------KIPTP-ASGPVGI 188 (299)
T ss_dssp EEEECSST---TCCEEEEEECTTSC--------EEEEETTTTEEEEECT-TCCEEEE----------ECSST-TCCEEEE
T ss_pred EEecCCCC---CCCCceEEEcCCCC--------EEEEeCCCCEEEEEcC-CCcEEEe----------eCCCC-CCcceeE
Confidence 22211111 13577888876543 2222 34577888876 4432211 01111 2358899
Q ss_pred EEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEE
Q 003087 167 DYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVAT 246 (849)
Q Consensus 167 afsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs 246 (849)
+++|+|++.++....+ .|..|+..+. ...+ . . .. +...+..++++|+|++.++
T Consensus 189 ~~~~~g~l~v~~~~~~-------------~i~~~~~~g~--~~~~-~--------~-~~--~~~~~~~i~~~~~g~l~v~ 241 (299)
T 2z2n_A 189 TKGNDDALWFVEIIGN-------------KIGRITTSGE--ITEF-K--------I-PT--PNARPHAITAGAGIDLWFT 241 (299)
T ss_dssp EECTTSSEEEEETTTT-------------EEEEECTTCC--EEEE-E--------C-SS--TTCCEEEEEECSTTCEEEE
T ss_pred EECCCCCEEEEccCCc-------------eEEEECCCCc--EEEE-E--------C-CC--CCCCceeEEECCCCCEEEe
Confidence 9999999776543332 3667766221 1111 0 0 11 2346789999999998887
Q ss_pred EeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCEEEEEEeCCcEEEEEecCCc
Q 003087 247 SDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNILILARKSSIITMIDVLSGL 322 (849)
Q Consensus 247 ~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~la~a~~dgti~lwdl~~~~ 322 (849)
...++.|..||..+ . +..+... .....+.++++ ++|.+.++...+.|..++..+++
T Consensus 242 ~~~~~~i~~~d~~g-~--~~~~~~~----------------~~~~~~~~i~~-~~g~l~v~~~~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 242 EWGANKIGRLTSNN-I--IEEYPIQ----------------IKSAEPHGICF-DGETIWFAMECDKIGKLTLIKDN 297 (299)
T ss_dssp ETTTTEEEEEETTT-E--EEEEECS----------------SSSCCEEEEEE-CSSCEEEEETTTEEEEEEEC---
T ss_pred ccCCceEEEECCCC-c--eEEEeCC----------------CCCCccceEEe-cCCCEEEEecCCcEEEEEcCccc
Confidence 77889999999843 2 2233210 11245788999 99988777667888888877653
No 194
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.12 E-value=3e-09 Score=115.99 Aligned_cols=249 Identities=8% Similarity=-0.033 Sum_probs=146.5
Q ss_pred ceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCC-ccce
Q 003087 12 KQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANG-EEIT 89 (849)
Q Consensus 12 ~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g-~~~~ 89 (849)
.+..++++ ++++.++.. +++|.+||... ++.+..+. .......++|||||++.++...+++|.+||..+ +...
T Consensus 45 ~~~~i~~~-~~~lyv~~~~~~~v~viD~~t--~~~~~~i~--~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~ 119 (328)
T 3dsm_A 45 VAQSMVIR-DGIGWIVVNNSHVIFAIDINT--FKEVGRIT--GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITG 119 (328)
T ss_dssp CEEEEEEE-TTEEEEEEGGGTEEEEEETTT--CCEEEEEE--CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEE
T ss_pred cceEEEEE-CCEEEEEEcCCCEEEEEECcc--cEEEEEcC--CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEE
Confidence 36778885 345445554 58999999764 33444443 245678999999997666665899999999874 4333
Q ss_pred ecccccc-cccccEEEEEecCCcccccccceeEEEEe--CCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEE
Q 003087 90 RFTNKHL-KVSLPIIGLIAQDETDVQRSCLCSFTVFT--SDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICT 166 (849)
Q Consensus 90 ~l~~~~~-~~~~~V~~l~fs~~~~~~~s~~~~~~~~s--~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~sv 166 (849)
++..... .......+|++ ++ ..+++.+ .+++|.++|..+++....+. .+ .....+
T Consensus 120 ~i~~g~~~~~~~~p~~i~~-~~--------~~lyv~~~~~~~~v~viD~~t~~~~~~i~-----------~g--~~p~~i 177 (328)
T 3dsm_A 120 YIECPDMDMESGSTEQMVQ-YG--------KYVYVNCWSYQNRILKIDTETDKVVDELT-----------IG--IQPTSL 177 (328)
T ss_dssp EEECTTCCTTTCBCCCEEE-ET--------TEEEEEECTTCCEEEEEETTTTEEEEEEE-----------CS--SCBCCC
T ss_pred EEEcCCccccCCCcceEEE-EC--------CEEEEEcCCCCCEEEEEECCCCeEEEEEE-----------cC--CCccce
Confidence 4332110 00002234555 21 1344444 48899999988766432211 11 235678
Q ss_pred EEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEE
Q 003087 167 DYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVAT 246 (849)
Q Consensus 167 afsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs 246 (849)
+++|||++++++..+.. ...-.+.++ .|..+|..+.. +. ..+..+.| .....|+|||||++|..
T Consensus 178 ~~~~dG~l~v~~~~~~~-~~~~~~~~~--~v~~id~~t~~----v~-----~~~~~~~g----~~p~~la~~~d~~~lyv 241 (328)
T 3dsm_A 178 VMDKYNKMWTITDGGYE-GSPYGYEAP--SLYRIDAETFT----VE-----KQFKFKLG----DWPSEVQLNGTRDTLYW 241 (328)
T ss_dssp EECTTSEEEEEBCCBCT-TCSSCBCCC--EEEEEETTTTE----EE-----EEEECCTT----CCCEEEEECTTSCEEEE
T ss_pred EEcCCCCEEEEECCCcc-CCccccCCc--eEEEEECCCCe----EE-----EEEecCCC----CCceeEEEecCCCEEEE
Confidence 99999997765433200 000000012 37777765431 11 11111111 25678999999999988
Q ss_pred EeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEec-CCEEEEEE-----eCCcEEEEEecC
Q 003087 247 SDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWS-DNILILAR-----KSSIITMIDVLS 320 (849)
Q Consensus 247 ~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~-D~~la~a~-----~dgti~lwdl~~ 320 (849)
++. +|.+||..+++. ..... +. .....+..+++.| ++.+.++. .+|+|.+||..
T Consensus 242 ~~~--~v~~~d~~t~~~--~~~~~-----------~~----~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~- 301 (328)
T 3dsm_A 242 INN--DIWRMPVEADRV--PVRPF-----------LE----FRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ- 301 (328)
T ss_dssp ESS--SEEEEETTCSSC--CSSCS-----------BC----CCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-
T ss_pred Ecc--EEEEEECCCCce--eeeee-----------ec----CCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-
Confidence 765 899999987643 11110 00 0124578899998 56665554 67899999988
Q ss_pred Ccc
Q 003087 321 GLK 323 (849)
Q Consensus 321 ~~~ 323 (849)
++.
T Consensus 302 g~~ 304 (328)
T 3dsm_A 302 GKL 304 (328)
T ss_dssp CCE
T ss_pred CCE
Confidence 653
No 195
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.11 E-value=4.6e-09 Score=112.03 Aligned_cols=229 Identities=7% Similarity=0.054 Sum_probs=136.4
Q ss_pred CCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCCccceecccccccc
Q 003087 20 PRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANGEEITRFTNKHLKV 98 (849)
Q Consensus 20 PdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~~~~~l~~~~~~~ 98 (849)
..|++|++++ ++.|.+|+..+ ++..-++..++...+.+++++|||++|+ +.++.|+.||.+|+.+.++..+.
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~t--G~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~~G~~~W~~~~~~--- 75 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDT--KEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITRDGRELWNIAAPA--- 75 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTT--TEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECTTSCEEEEEECCT---
T ss_pred CCCcEEEeeCCCCEEEEEECCC--CeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECCCCCEEEEEcCCC---
Confidence 3467888887 57999999754 3444333322123578999999999999 35778999999999888775431
Q ss_pred cccEEEEEecCCcccccccceeEEEEeC-CCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEcCCCceEEE
Q 003087 99 SLPIIGLIAQDETDVQRSCLCSFTVFTS-DGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSV 177 (849)
Q Consensus 99 ~~~V~~l~fs~~~~~~~s~~~~~~~~s~-Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas 177 (849)
...+.++.+.+++... ++.+. ++.+..++. .|+....+. + . ....+++ .....+++.|+|+++++
T Consensus 76 ~~~~~~~~~~~dG~~l-------v~~~~~~~~v~~vd~-~Gk~l~~~~--~-~--~~~~~~~-~~~~~v~~~~~G~~lv~ 141 (276)
T 3no2_A 76 GCEMQTARILPDGNAL-------VAWCGHPSTILEVNM-KGEVLSKTE--F-E--TGIERPH-AQFRQINKNKKGNYLVP 141 (276)
T ss_dssp TCEEEEEEECTTSCEE-------EEEESTTEEEEEECT-TSCEEEEEE--E-C--CSCSSGG-GSCSCCEECTTSCEEEE
T ss_pred CccccccEECCCCCEE-------EEecCCCCEEEEEeC-CCCEEEEEe--c-c--CCCCccc-ccccCceECCCCCEEEE
Confidence 1246777887755321 11122 333333332 122211110 0 0 0001121 13556789999999987
Q ss_pred EecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEEeCCCcEEEEe
Q 003087 178 VSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFE 257 (849)
Q Consensus 178 ~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd 257 (849)
.+.++ .|..|+..+. .++... ......++.+.|+|++|++++.+++|..+|
T Consensus 142 ~~~~~-------------~v~~~d~~G~----~~w~~~------------~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d 192 (276)
T 3no2_A 142 LFATS-------------EVREIAPNGQ----LLNSVK------------LSGTPFSSAFLDNGDCLVACGDAHCFVQLN 192 (276)
T ss_dssp ETTTT-------------EEEEECTTSC----EEEEEE------------CSSCCCEEEECTTSCEEEECBTTSEEEEEC
T ss_pred ecCCC-------------EEEEECCCCC----EEEEEE------------CCCCccceeEcCCCCEEEEeCCCCeEEEEe
Confidence 76554 3677776532 222211 012456788999999999988889999999
Q ss_pred cCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCEEEEEEeCC
Q 003087 258 MDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNILILARKSS 311 (849)
Q Consensus 258 ~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~la~a~~dg 311 (849)
..+++. ++++.... +. +.....+..++.-++|.+.++..+|
T Consensus 193 ~~tG~~-~w~~~~~~---------~~---~~~l~~~~~~~~~~~G~i~v~~~~g 233 (276)
T 3no2_A 193 LESNRI-VRRVNAND---------IE---GVQLFFVAQLFPLQNGGLYICNWQG 233 (276)
T ss_dssp TTTCCE-EEEEEGGG---------SB---SCCCSEEEEEEECTTSCEEEEEECT
T ss_pred CcCCcE-EEEecCCC---------CC---CccccccccceEcCCCCEEEEeccC
Confidence 997754 55554211 00 0112345667777788776666433
No 196
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.08 E-value=1.4e-09 Score=121.50 Aligned_cols=182 Identities=13% Similarity=0.073 Sum_probs=121.0
Q ss_pred cceEEEEEcCCCCeEEEEeCCeEEEEecCCCC---------CcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEE
Q 003087 11 KKQVSLFISPRGERVAVAAVNQVTILQKDDDY---------QEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFF 81 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas~~~i~iw~~~~~~---------~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlW 81 (849)
..+..|++||++.++|+|+.+.+++|+..+-. -.+. ....... |..|+| ||++|+++ .+|.|++|
T Consensus 38 ~~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~--~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~ 111 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFK--WEKEIPD-VIFVCF--HGDQVLVS-TRNALYSL 111 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCS--EEEECTT-EEEEEE--ETTEEEEE-ESSEEEEE
T ss_pred ccccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccce--EEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEE
Confidence 36899999999999999998899999854210 0111 1111234 999999 99999999 88999999
Q ss_pred ecCCcc-ceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccC
Q 003087 82 KANGEE-ITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFP 160 (849)
Q Consensus 82 d~~g~~-~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~ 160 (849)
|+.... ......+ ...|.++.+.+. .+++++.||+|.+|++..+.... +.
T Consensus 112 dv~sl~~~~~~~~~----~~~v~~i~~~~p---------~~av~~~dG~L~v~dl~~~~~~~----------------~~ 162 (388)
T 1xip_A 112 DLEELSEFRTVTSF----EKPVFQLKNVNN---------TLVILNSVNDLSALDLRTKSTKQ----------------LA 162 (388)
T ss_dssp ESSSTTCEEEEEEC----SSCEEEEEECSS---------EEEEEETTSEEEEEETTTCCEEE----------------EE
T ss_pred EchhhhccCcccee----ecceeeEEecCC---------CEEEEECCCCEEEEEccCCcccc----------------cc
Confidence 986432 1122111 234666665432 17788999999999998655321 12
Q ss_pred CceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcC--cccceeccccceeeccCCCccccccceEEEc
Q 003087 161 QNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLE--LEQLYTTQIEGLYCEPKGHEVQLAHPKVLIS 238 (849)
Q Consensus 161 ~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~--~~~l~~~~~~~~~~~~~g~~h~~~V~~vafS 238 (849)
..|.|++|||+| +++|..|++ |++|+..+... -..|-.+. .+....+ |...|.+|.|.
T Consensus 163 ~~Vs~v~WSpkG--~~vg~~dg~-------------i~~~~~~~~~~~~k~~I~~Pp---~~~~~~~--~~~~V~sI~wl 222 (388)
T 1xip_A 163 QNVTSFDVTNSQ--LAVLLKDRS-------------FQSFAWRNGEMEKQFEFSLPS---ELEELPV--EEYSPLSVTIL 222 (388)
T ss_dssp ESEEEEEECSSE--EEEEETTSC-------------EEEEEEETTEEEEEEEECCCH---HHHTSCT--TTSEEEEEEES
T ss_pred CCceEEEEcCCc--eEEEEcCCc-------------EEEEcCCCccccccceecCCc---ccccccC--CCeeEEEEEEe
Confidence 369999999999 567777763 78897766420 00110000 0000112 56789999999
Q ss_pred cCCCEEEEE
Q 003087 239 PQGKFVATS 247 (849)
Q Consensus 239 PDG~~LAs~ 247 (849)
+++++|++=
T Consensus 223 ~~~~flv~y 231 (388)
T 1xip_A 223 SPQDFLAVF 231 (388)
T ss_dssp SSSEEEEEE
T ss_pred cCCeEEEEE
Confidence 999999973
No 197
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.04 E-value=1e-08 Score=106.93 Aligned_cols=198 Identities=11% Similarity=0.006 Sum_probs=126.8
Q ss_pred cceEEEEEcCCCCeEEEEeCCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCCcccee
Q 003087 11 KKQVSLFISPRGERVAVAAVNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANGEEITR 90 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~~~~~ 90 (849)
..+..|+|+|||+++++..++.|.+|+..+.. ...+...+......++++|||+++++...++.|.+|+..+.....
T Consensus 67 ~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~---~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~ 143 (270)
T 1rwi_B 67 YQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNN---QTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTV 143 (270)
T ss_dssp CSCCCEEECTTCCEEEEETTTEEEEECTTCSC---CEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEE
T ss_pred CCcceeEECCCCCEEEEcCCCEEEEEeCCCce---EeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEe
Confidence 46789999999997766556789999865421 111211123567899999999998888888999999765433222
Q ss_pred cccccccccccEEEEEecCCcccccccceeEEEE-eCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEc
Q 003087 91 FTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVF-TSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYH 169 (849)
Q Consensus 91 l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~-s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafs 169 (849)
..... .....++++.+++. +++. ..++.|..|+...+..... .. .+. ..+.+++++
T Consensus 144 ~~~~~---~~~p~~i~~~~~g~--------l~v~~~~~~~i~~~~~~~~~~~~~----------~~-~~~-~~p~~i~~d 200 (270)
T 1rwi_B 144 LPFTG---LNDPDGVAVDNSGN--------VYVTDTDNNRVVKLEAESNNQVVL----------PF-TDI-TAPWGIAVD 200 (270)
T ss_dssp CCCCS---CCSCCCEEECTTCC--------EEEEEGGGTEEEEECTTTCCEEEC----------CC-SSC-CSEEEEEEC
T ss_pred ecccc---CCCceeEEEeCCCC--------EEEEECCCCEEEEEecCCCceEee----------cc-cCC-CCceEEEEC
Confidence 11111 12355778776443 2222 3567899998764332111 00 111 358999999
Q ss_pred CCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEEeC
Q 003087 170 PELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDT 249 (849)
Q Consensus 170 Pdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~ 249 (849)
|+|.+.++...++ .|..|+..+.. .... ... +...+..|+|+|||++.++...
T Consensus 201 ~~g~l~v~~~~~~-------------~v~~~~~~~~~----~~~~--------~~~--~~~~p~~i~~~~~g~l~v~~~~ 253 (270)
T 1rwi_B 201 EAGTVYVTEHNTN-------------QVVKLLAGSTT----STVL--------PFT--GLNTPLAVAVDSDRTVYVADRG 253 (270)
T ss_dssp TTCCEEEEETTTS-------------CEEEECTTCSC----CEEC--------CCC--SCSCEEEEEECTTCCEEEEEGG
T ss_pred CCCCEEEEECCCC-------------cEEEEcCCCCc----ceee--------ccC--CCCCceeEEECCCCCEEEEECC
Confidence 9997776543343 27778765531 0000 001 2246779999999999999999
Q ss_pred CCcEEEEecCCC
Q 003087 250 NGCLYIFEMDKD 261 (849)
Q Consensus 250 Dgtv~LWd~~~~ 261 (849)
+++|+++++...
T Consensus 254 ~~~v~~~~~~~~ 265 (270)
T 1rwi_B 254 NDRVVKLTSLEH 265 (270)
T ss_dssp GTEEEEECCCGG
T ss_pred CCEEEEEcCCCc
Confidence 999999998754
No 198
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.03 E-value=1.9e-08 Score=113.59 Aligned_cols=269 Identities=12% Similarity=0.030 Sum_probs=148.5
Q ss_pred cccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCC--cEEEEecCC
Q 003087 9 KTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTH--TVYFFKANG 85 (849)
Q Consensus 9 ~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dg--tIrlWd~~g 85 (849)
+......|+|+|||+++++.. ++.|++|+..++ . +..+... ..... ++|+|+|+.|.+++.++ .|.+|+..+
T Consensus 129 ~~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g--~-~~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~ 203 (409)
T 3hrp_A 129 KFKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDN--K-VTTVHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKAS 203 (409)
T ss_dssp CCCCEEEEEECSTTEEEEEETTTTEEEEEETTTT--E-EEEEEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGG
T ss_pred ccCCceEEEEeCCCCEEEEecCCCcEEEEECCCC--E-EEEeecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCC
Confidence 457889999999999777765 478999997642 1 2222221 12223 99999999999998876 788888875
Q ss_pred ccc-eecccccccccccEEEEEecC-CcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCce
Q 003087 86 EEI-TRFTNKHLKVSLPIIGLIAQD-ETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNV 163 (849)
Q Consensus 86 ~~~-~~l~~~~~~~~~~V~~l~fs~-~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V 163 (849)
... ..+............+++++| ++ .+++...+|.|..|+..++... .+. . ....+. ...-
T Consensus 204 ~~~~~~~g~~~~~~~~~p~~iav~p~~g--------~lyv~d~~~~I~~~d~~~~~~~-~~~----~--~~~~g~-~~~~ 267 (409)
T 3hrp_A 204 GWAPTRIGQLGSTFSGKIGAVALDETEE--------WLYFVDSNKNFGRFNVKTQEVT-LIK----Q--LELSGS-LGTN 267 (409)
T ss_dssp TTCEEEEEECCTTSCSCCCBCEECTTSS--------EEEEECTTCEEEEEETTTCCEE-EEE----E--CCCCSC-CCCS
T ss_pred CceeEEeeeccchhcCCcEEEEEeCCCC--------eEEEEECCCcEEEEECCCCCEE-EEe----c--ccccCC-CCCC
Confidence 432 222000000112355677776 33 3455567888999998755421 110 0 000111 1111
Q ss_pred --EEEEEcCC-CceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceecc-ccceeeccCCCccccccceEEEcc
Q 003087 164 --ICTDYHPE-LSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQ-IEGLYCEPKGHEVQLAHPKVLISP 239 (849)
Q Consensus 164 --~svafsPd-g~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~-~~~~~~~~~g~~h~~~V~~vafSP 239 (849)
+.++|+|+ |.+.+ +.... ..|..|+.++. ...+.... ..|................|+|+|
T Consensus 268 P~~~ia~~p~~g~lyv-~d~~~------------~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~ 332 (409)
T 3hrp_A 268 PGPYLIYYFVDSNFYM-SDQNL------------SSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDE 332 (409)
T ss_dssp SCCEEEEETTTTEEEE-EETTT------------TEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECT
T ss_pred ccccEEEeCCCCEEEE-EeCCC------------CEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeC
Confidence 39999995 55554 43332 13666665542 11111100 000000000000123456899999
Q ss_pred CCCEEEEEe-CCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCEEEEEE-eCCcEEEEE
Q 003087 240 QGKFVATSD-TNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNILILAR-KSSIITMID 317 (849)
Q Consensus 240 DG~~LAs~s-~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~la~a~-~dgti~lwd 317 (849)
||++.++-. .+++|+.|+++++. +..+.... ...+...-.+. ...+..+..|++.+||.|.++. .++.|+.++
T Consensus 333 dG~lyvad~~~~~~I~~~~~~~G~--v~~~~g~~--~~~g~~~g~~~-~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~ 407 (409)
T 3hrp_A 333 DGNFYIVDGFKGYCLRKLDILDGY--VSTVAGQV--DVASQIDGTPL-EATFNYPYDICYDGEGGYWIAEAWGKAIRKYA 407 (409)
T ss_dssp TCCEEEEETTTTCEEEEEETTTTE--EEEEEECT--TCBSCCCBSTT-TCCBSSEEEEEECSSSEEEEEESTTCEEEEEE
T ss_pred CCCEEEEeCCCCCEEEEEECCCCE--EEEEeCCC--CCCCcCCCChh-ceEeCCceEEEEcCCCCEEEEECCCCeEEEEE
Confidence 999888777 79999999977653 33332210 00000000000 1123568999999999877664 566787776
Q ss_pred e
Q 003087 318 V 318 (849)
Q Consensus 318 l 318 (849)
+
T Consensus 408 ~ 408 (409)
T 3hrp_A 408 V 408 (409)
T ss_dssp E
T ss_pred e
Confidence 5
No 199
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.01 E-value=7.1e-09 Score=124.96 Aligned_cols=244 Identities=11% Similarity=0.105 Sum_probs=139.5
Q ss_pred ceEEEEEcCCCCeEEEEe-----C-CeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCc--------
Q 003087 12 KQVSLFISPRGERVAVAA-----V-NQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHT-------- 77 (849)
Q Consensus 12 ~v~slafSPdG~~LAsas-----~-~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgt-------- 77 (849)
.+.+++|||||++||.+. + .+|++|++.++ ..... ...+ .....++|| ||+.|+.++.+++
T Consensus 130 ~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg--~~~~~-~~~~-~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~ 204 (693)
T 3iuj_A 130 ALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESK--QPLET-PLKD-VKFSGISWL-GNEGFFYSSYDKPDGSELSAR 204 (693)
T ss_dssp EEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTC--SEEEE-EEEE-EESCCCEEE-TTTEEEEEESSCCC-------
T ss_pred EEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCC--CCCcc-ccCC-ceeccEEEe-CCCEEEEEEecCccccccccc
Confidence 578899999999999763 1 26889998753 22211 1110 012468999 9999999988854
Q ss_pred -----EEEEecCCccc--eecccccccccccEEEEEecCCcccccccceeEEEEe---CCCcEEEEEecCCCCccccccc
Q 003087 78 -----VYFFKANGEEI--TRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFT---SDGFLHQIEISQDPSASISSAS 147 (849)
Q Consensus 78 -----IrlWd~~g~~~--~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s---~Dg~v~lw~~~~~~~~~~~~~~ 147 (849)
|++|++.+... ..+..........+.++.|+||+... +++.+ .+..|.++++.++... .
T Consensus 205 ~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l------~~~~~~~~~~~~i~~~d~~~~~~~-~---- 273 (693)
T 3iuj_A 205 TDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFL------LISAANSTSGNRLYVKDLSQENAP-L---- 273 (693)
T ss_dssp CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEE------EEEEESSSSCCEEEEEETTSTTCC-C----
T ss_pred CCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEE------EEEEccCCCCcEEEEEECCCCCCc-e----
Confidence 99999853221 12211111011246788888876432 11112 2357888888654311 0
Q ss_pred ccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcC--cccceeccccceeeccCC
Q 003087 148 ASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLE--LEQLYTTQIEGLYCEPKG 225 (849)
Q Consensus 148 ~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~--~~~l~~~~~~~~~~~~~g 225 (849)
..+..+ ...+... |+|+|..|+..++.+ ...+ .|..|++.++.. .+.+. .
T Consensus 274 -----~~l~~~-~~~~~~~-~~~~g~~l~~~t~~~-------~~~~--~l~~~d~~~~~~~~~~~l~------------~ 325 (693)
T 3iuj_A 274 -----LTVQGD-LDADVSL-VDNKGSTLYLLTNRD-------APNR--RLVTVDAANPGPAHWRDLI------------P 325 (693)
T ss_dssp -----EEEECS-SSSCEEE-EEEETTEEEEEECTT-------CTTC--EEEEEETTSCCGGGCEEEE------------C
T ss_pred -----EEEeCC-CCceEEE-EeccCCEEEEEECCC-------CCCC--EEEEEeCCCCCccccEEEe------------c
Confidence 122222 2234444 677777776655543 0112 366677665321 11111 1
Q ss_pred CccccccceEEEccCCCEEEEEeCCC---cEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCC
Q 003087 226 HEVQLAHPKVLISPQGKFVATSDTNG---CLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDN 302 (849)
Q Consensus 226 ~~h~~~V~~vafSPDG~~LAs~s~Dg---tv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~ 302 (849)
|...+. +|||+|+.|+....++ .|++|++.+.. ...... .....+..+++++|+
T Consensus 326 --~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~--~~~l~~-----------------p~~~~~~~~~~~~d~ 382 (693)
T 3iuj_A 326 --ERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKR--VREVAL-----------------PGLGSVSGFNGKHDD 382 (693)
T ss_dssp --CCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCE--EEEECC-----------------SSSSEEEECCCCTTC
T ss_pred --CCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCe--eEEeec-----------------CCCceEEeeecCCCC
Confidence 333443 9999999988776654 68889888652 122211 011235567777776
Q ss_pred E-EEEEEeC----CcEEEEEecCCc
Q 003087 303 I-LILARKS----SIITMIDVLSGL 322 (849)
Q Consensus 303 ~-la~a~~d----gti~lwdl~~~~ 322 (849)
. ++....+ ++|..||+.+++
T Consensus 383 ~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 383 PALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp SCEEEEEECSSSCCEEEEECTTTCC
T ss_pred CEEEEEecCCCCCCEEEEEECCCCe
Confidence 4 5555545 789999998775
No 200
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.01 E-value=5.6e-08 Score=114.25 Aligned_cols=256 Identities=7% Similarity=-0.048 Sum_probs=147.2
Q ss_pred ceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEEC----CCCCEEEEEeC-CCcEEEEecC-
Q 003087 12 KQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWS----ESHDVLGIVDD-THTVYFFKAN- 84 (849)
Q Consensus 12 ~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafS----PDG~~LAs~~~-dgtIrlWd~~- 84 (849)
.+..++|||||++|.+++ ++.|.+||......+....... ...-+.++|| |||++|.+++. +++|.|+|..
T Consensus 198 ~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~--G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t 275 (567)
T 1qks_A 198 AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI--GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGET 275 (567)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC--CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTT
T ss_pred CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEec--CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCC
Confidence 567899999999998887 5799999974222233443332 2345789999 79999987665 5999999975
Q ss_pred Cccceecccccccc-------cccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceecc
Q 003087 85 GEEITRFTNKHLKV-------SLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRR 157 (849)
Q Consensus 85 g~~~~~l~~~~~~~-------~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~ 157 (849)
.+.+.++.-....+ ...+.++.+++++.. -++....+|.|.++|.......... ++.
T Consensus 276 ~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~------~vv~~~~~g~v~~vd~~~~~~~~v~---------~i~- 339 (567)
T 1qks_A 276 LEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPE------FIVNVKETGKILLVDYTDLNNLKTT---------EIS- 339 (567)
T ss_dssp CCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSE------EEEEETTTTEEEEEETTCSSEEEEE---------EEE-
T ss_pred CcEEEEEeccccccccccccCCCceEEEEEcCCCCE------EEEEecCCCeEEEEecCCCccceee---------eee-
Confidence 44444443211000 125677777775321 1333467899999987653321110 111
Q ss_pred ccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEE-
Q 003087 158 QFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVL- 236 (849)
Q Consensus 158 ~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~va- 236 (849)
.......+.|+|||++++++.... ..|.++|..++. .+......|- . . |-+ ....
T Consensus 340 -~~~~~~d~~~~pdgr~~~va~~~s------------n~V~ViD~~t~k---l~~~i~vgg~--~--P--hpg--~g~~~ 395 (567)
T 1qks_A 340 -AERFLHDGGLDGSHRYFITAANAR------------NKLVVIDTKEGK---LVAIEDTGGQ--T--P--HPG--RGANF 395 (567)
T ss_dssp -CCSSEEEEEECTTSCEEEEEEGGG------------TEEEEEETTTTE---EEEEEECSSS--S--B--CCT--TCEEE
T ss_pred -ccccccCceECCCCCEEEEEeCCC------------CeEEEEECCCCc---EEEEEeccCc--C--C--CCc--cceee
Confidence 112467889999999988776543 137888887642 1111110000 0 0 221 1222
Q ss_pred EccCCCE-EEEEe-CCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCEEE-EEEe----
Q 003087 237 ISPQGKF-VATSD-TNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNILI-LARK---- 309 (849)
Q Consensus 237 fSPDG~~-LAs~s-~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~la-~a~~---- 309 (849)
++|+|.. .+|.. .+++|.++|.++....-..|..-. .+.. .. .+..-|..+||++.+ +...
T Consensus 396 ~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~--------~i~~---~g-~g~~~i~~~p~~~~l~v~~~~~~~ 463 (567)
T 1qks_A 396 VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILD--------SFPA---LG-GGSLFIKTHPNSQYLYVDATLNPE 463 (567)
T ss_dssp EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEE--------EEEC---SC-SCCCCEECCTTCSEEEEECTTCSS
T ss_pred ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEE--------EEec---CC-CCCEEEEeCCCCCeEEEecCCCCC
Confidence 6898555 45554 468999999986321000121100 0000 00 122336678998644 4332
Q ss_pred ---CCcEEEEEecCC
Q 003087 310 ---SSIITMIDVLSG 321 (849)
Q Consensus 310 ---dgti~lwdl~~~ 321 (849)
+++|.|+|+.+.
T Consensus 464 ~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 464 AEISGSVAVFDIKAM 478 (567)
T ss_dssp HHHHTCEEEEEGGGC
T ss_pred cccCceEEEEECCcc
Confidence 469999999987
No 201
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.98 E-value=2.9e-07 Score=96.88 Aligned_cols=243 Identities=9% Similarity=0.003 Sum_probs=151.5
Q ss_pred ccCcccccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeee-cCCCCEEEEEECCCCCEEEEEeCCCcEEEE
Q 003087 4 YRQPRKTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNC-TGLGASIYGAWSESHDVLGIVDDTHTVYFF 81 (849)
Q Consensus 4 ~~~~~~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~-~~~~~v~~vafSPDG~~LAs~~~dgtIrlW 81 (849)
+.-|.....+.+|+++|||++.++.. ++.|.+++.. + .. ..+.. .+...+..++++|+|++.++...++.|..+
T Consensus 13 ~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~--~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~ 88 (300)
T 2qc5_A 13 FNLSIPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-G--RI-KEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKL 88 (300)
T ss_dssp EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S--CE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEE
T ss_pred EecCCCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-C--ce-EEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEE
Confidence 33455567899999999999887764 5789998854 2 21 12221 123568899999999999888878999999
Q ss_pred ecCCccceecccccccccccEEEEEecCCcccccccceeEEEEe-CCCcEEEEEecCCCCcccccccccCCcceeccccC
Q 003087 82 KANGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFT-SDGFLHQIEISQDPSASISSASASSSGLTLRRQFP 160 (849)
Q Consensus 82 d~~g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s-~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~ 160 (849)
|..|+. ..+.... ....+.++++.+++. +.+.+ .++.|..++.. +..... .+.. ..
T Consensus 89 d~~g~~-~~~~~~~--~~~~~~~i~~~~~g~--------l~v~~~~~~~i~~~~~~-g~~~~~----------~~~~-~~ 145 (300)
T 2qc5_A 89 SKKGGF-TEYPLPQ--PDSGPYGITEGLNGD--------IWFTQLNGDRIGKLTAD-GTIYEY----------DLPN-KG 145 (300)
T ss_dssp CTTSCE-EEEECSS--TTCCEEEEEECSTTC--------EEEEETTTTEEEEECTT-SCEEEE----------ECSS-TT
T ss_pred CCCCCe-EEecCCC--CCCCCccceECCCCC--------EEEEccCCCeEEEECCC-CCEEEc----------cCCC-CC
Confidence 988654 3222111 113577888876443 22223 36677777654 332111 1111 12
Q ss_pred CceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccC
Q 003087 161 QNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQ 240 (849)
Q Consensus 161 ~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPD 240 (849)
..+.+++++|+|++.++....+ .|..++..+. ...+ .. .+ +...+..++++|+
T Consensus 146 ~~~~~i~~d~~g~l~v~~~~~~-------------~i~~~~~~g~--~~~~---------~~-~~--~~~~~~~i~~d~~ 198 (300)
T 2qc5_A 146 SYPAFITLGSDNALWFTENQNN-------------SIGRITNTGK--LEEY---------PL-PT--NAAAPVGITSGND 198 (300)
T ss_dssp CCEEEEEECTTSSEEEEETTTT-------------EEEEECTTCC--EEEE---------EC-SS--TTCCEEEEEECTT
T ss_pred CCceeEEECCCCCEEEEecCCC-------------eEEEECCCCc--EEEe---------eC-CC--CCCCcceEEECCC
Confidence 3589999999999665433232 2555554221 1111 00 11 2345778999999
Q ss_pred CCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCEEEEEE-eCCcEEEEEec
Q 003087 241 GKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNILILAR-KSSIITMIDVL 319 (849)
Q Consensus 241 G~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~la~a~-~dgti~lwdl~ 319 (849)
|++.++....+.|..|+..+. . ..+.. . .....+.++++.++|.+.++. .++.|..++..
T Consensus 199 g~l~v~~~~~~~i~~~~~~g~-~--~~~~~------------~----~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~ 259 (300)
T 2qc5_A 199 GALWFVEIMGNKIGRITTTGE-I--SEYDI------------P----TPNARPHAITAGKNSEIWFTEWGANQIGRITND 259 (300)
T ss_dssp SSEEEEETTTTEEEEECTTCC-E--EEEEC------------S----STTCCEEEEEECSTTCEEEEETTTTEEEEECTT
T ss_pred CCEEEEccCCCEEEEEcCCCc-E--EEEEC------------C----CCCCCceEEEECCCCCEEEeccCCCeEEEECCC
Confidence 998888777888999998432 1 22211 0 112457889999999876665 45889999873
No 202
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=98.94 E-value=2.1e-08 Score=106.94 Aligned_cols=194 Identities=8% Similarity=0.011 Sum_probs=123.0
Q ss_pred CCCCEEEEEeCCCcEEEEec-CCccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcc
Q 003087 64 ESHDVLGIVDDTHTVYFFKA-NGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSAS 142 (849)
Q Consensus 64 PDG~~LAs~~~dgtIrlWd~-~g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~ 142 (849)
..|++|++++.|++|++||. +|+.+.++..+.. ..+.++++.|++.. ++ +.++.|..||. +++...
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~---~~~~~~~~~pdG~i--------lv-s~~~~V~~~d~-~G~~~W 69 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKG---WECNSVAATKAGEI--------LF-SYSKGAKMITR-DGRELW 69 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTT---CCCCEEEECTTSCE--------EE-ECBSEEEEECT-TSCEEE
T ss_pred CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCcc---CCCcCeEECCCCCE--------EE-eCCCCEEEECC-CCCEEE
Confidence 45789999999999999999 7998887765421 23567788776532 22 45677887876 455432
Q ss_pred cccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeec
Q 003087 143 ISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCE 222 (849)
Q Consensus 143 ~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~ 222 (849)
. +..+....+.++.+.|||+++++.+.+. .+++.+...|. .+|... ..+..
T Consensus 70 ~-----------~~~~~~~~~~~~~~~~dG~~lv~~~~~~-~~v~~vd~~Gk---~l~~~~------------~~~~~-- 120 (276)
T 3no2_A 70 N-----------IAAPAGCEMQTARILPDGNALVAWCGHP-STILEVNMKGE---VLSKTE------------FETGI-- 120 (276)
T ss_dssp E-----------EECCTTCEEEEEEECTTSCEEEEEESTT-EEEEEECTTSC---EEEEEE------------ECCSC--
T ss_pred E-----------EcCCCCccccccEECCCCCEEEEecCCC-CEEEEEeCCCC---EEEEEe------------ccCCC--
Confidence 2 2222123588999999999998776522 12222222222 122211 00000
Q ss_pred cCCCccccccceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCC
Q 003087 223 PKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDN 302 (849)
Q Consensus 223 ~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~ 302 (849)
.+ +......++++|||++|++...++.|..||.. ++. ++++.. ...+.++...++|
T Consensus 121 -~~--~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~-~w~~~~-------------------~~~~~~~~~~~~g 176 (276)
T 3no2_A 121 -ER--PHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQL-LNSVKL-------------------SGTPFSSAFLDNG 176 (276)
T ss_dssp -SS--GGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCE-EEEEEC-------------------SSCCCEEEECTTS
T ss_pred -Cc--ccccccCceECCCCCEEEEecCCCEEEEECCC-CCE-EEEEEC-------------------CCCccceeEcCCC
Confidence 11 22355678899999999999999999999998 443 455431 1234566777887
Q ss_pred EEEEE-EeCCcEEEEEecCCcc
Q 003087 303 ILILA-RKSSIITMIDVLSGLK 323 (849)
Q Consensus 303 ~la~a-~~dgti~lwdl~~~~~ 323 (849)
.++++ ..++.|..+|..+|+.
T Consensus 177 ~~~v~~~~~~~v~~~d~~tG~~ 198 (276)
T 3no2_A 177 DCLVACGDAHCFVQLNLESNRI 198 (276)
T ss_dssp CEEEECBTTSEEEEECTTTCCE
T ss_pred CEEEEeCCCCeEEEEeCcCCcE
Confidence 65554 4556798899887774
No 203
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=98.93 E-value=1.7e-07 Score=110.21 Aligned_cols=242 Identities=10% Similarity=0.014 Sum_probs=142.1
Q ss_pred cCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEec---CCccceecccc
Q 003087 19 SPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKA---NGEEITRFTNK 94 (849)
Q Consensus 19 SPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~---~g~~~~~l~~~ 94 (849)
+|++.++++.. +++|.++|... ++.+.++.. ...+..++|||||++|.+++.|++|.+||+ +++.+.++..+
T Consensus 164 d~~~~~~V~~~~~~~V~viD~~t--~~v~~~i~~--g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G 239 (567)
T 1qks_A 164 DLENLFSVTLRDAGQIALIDGST--YEIKTVLDT--GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG 239 (567)
T ss_dssp CGGGEEEEEETTTTEEEEEETTT--CCEEEEEEC--SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC
T ss_pred CCCceEEEEeCCCCeEEEEECCC--CeEEEEEeC--CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC
Confidence 34444444444 57999999764 344444432 235678999999999999999999999999 45555555332
Q ss_pred cccccccEEEEEec----CCcccccccceeEEEEe-CCCcEEEEEecCCCCcccccccccCCcceec--cccCC-ceEEE
Q 003087 95 HLKVSLPIIGLIAQ----DETDVQRSCLCSFTVFT-SDGFLHQIEISQDPSASISSASASSSGLTLR--RQFPQ-NVICT 166 (849)
Q Consensus 95 ~~~~~~~V~~l~fs----~~~~~~~s~~~~~~~~s-~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~--~~~~~-~V~sv 166 (849)
..-.+++|+ |++.. +++.+ .+++|.++|..+.+....+. ....... +.++. .+..+
T Consensus 240 -----~~P~~ia~s~~~~pDGk~-------l~v~n~~~~~v~ViD~~t~~~~~~i~----~~~~~~~~~~~~p~~rva~i 303 (567)
T 1qks_A 240 -----SEARSIETSKMEGWEDKY-------AIAGAYWPPQYVIMDGETLEPKKIQS----TRGMTYDEQEYHPEPRVAAI 303 (567)
T ss_dssp -----SEEEEEEECCSTTCTTTE-------EEEEEEETTEEEEEETTTCCEEEEEE----CCEECTTTCCEESCCCEEEE
T ss_pred -----CCCceeEEccccCCCCCE-------EEEEEccCCeEEEEECCCCcEEEEEe----ccccccccccccCCCceEEE
Confidence 224689998 56543 33333 45899999976655433221 0000000 01222 58899
Q ss_pred EEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEE
Q 003087 167 DYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVAT 246 (849)
Q Consensus 167 afsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs 246 (849)
.+||++..+++.-.+. | .|.+++..+...+. +.... .......+.|+|||+++.+
T Consensus 304 ~~s~~~~~~vv~~~~~----------g--~v~~vd~~~~~~~~-v~~i~------------~~~~~~d~~~~pdgr~~~v 358 (567)
T 1qks_A 304 LASHYRPEFIVNVKET----------G--KILLVDYTDLNNLK-TTEIS------------AERFLHDGGLDGSHRYFIT 358 (567)
T ss_dssp EECSSSSEEEEEETTT----------T--EEEEEETTCSSEEE-EEEEE------------CCSSEEEEEECTTSCEEEE
T ss_pred EEcCCCCEEEEEecCC----------C--eEEEEecCCCccce-eeeee------------ccccccCceECCCCCEEEE
Confidence 9999988766544332 3 36666654421110 11100 1123347899999998766
Q ss_pred Ee-CCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecC-CEEEEEE--eCCcEEEEEecC
Q 003087 247 SD-TNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSD-NILILAR--KSSIITMIDVLS 320 (849)
Q Consensus 247 ~s-~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D-~~la~a~--~dgti~lwdl~~ 320 (849)
+. .+++|.++|+.+++. +........ ..|++.-..+ +.|+ +.+.+++ .+++|.++|..+
T Consensus 359 a~~~sn~V~ViD~~t~kl-~~~i~vgg~-------------~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~ 421 (567)
T 1qks_A 359 AANARNKLVVIDTKEGKL-VAIEDTGGQ-------------TPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDP 421 (567)
T ss_dssp EEGGGTEEEEEETTTTEE-EEEEECSSS-------------SBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred EeCCCCeEEEEECCCCcE-EEEEeccCc-------------CCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCC
Confidence 55 689999999998743 233321000 1122222222 4676 4454444 468999999987
No 204
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.93 E-value=3.2e-07 Score=98.09 Aligned_cols=235 Identities=6% Similarity=-0.048 Sum_probs=135.7
Q ss_pred cceEEEEEcCCCCeEEEE-e-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCCccc
Q 003087 11 KKQVSLFISPRGERVAVA-A-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANGEEI 88 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsa-s-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~~~ 88 (849)
.-....+|+|+++.|..+ . +++|..|+..++. ...+. ....+..++|+|||+++++. ++.|.+||..+..+
T Consensus 13 ~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~---~~~~~--~~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~~ 85 (297)
T 3g4e_A 13 RCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQ---VQRVT--MDAPVSSVALRQSGGYVATI--GTKFCALNWKEQSA 85 (297)
T ss_dssp SBEEEEEEETTTTEEEEEETTTTEEEEEETTTCC---EEEEE--CSSCEEEEEEBTTSSEEEEE--TTEEEEEETTTTEE
T ss_pred ccccCCeEECCCCEEEEEECCCCEEEEEECCCCc---EEEEe--CCCceEEEEECCCCCEEEEE--CCeEEEEECCCCcE
Confidence 345688999976655444 3 5789999876431 22222 23568899999999976664 56799999875444
Q ss_pred eecccccc-cccccEEEEEecCCcccccccceeEEEEeC--------CCcEEEEEecCCCCcccccccccCCcceecccc
Q 003087 89 TRFTNKHL-KVSLPIIGLIAQDETDVQRSCLCSFTVFTS--------DGFLHQIEISQDPSASISSASASSSGLTLRRQF 159 (849)
Q Consensus 89 ~~l~~~~~-~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~--------Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~ 159 (849)
..+..... .....+..+++.|++.. | +..... .+.-.+|.+..+..... +..+.
T Consensus 86 ~~~~~~~~~~~~~~~~di~~d~dG~l-~-----~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-----------~~~~~ 148 (297)
T 3g4e_A 86 VVLATVDNDKKNNRFNDGKVDPAGRY-F-----AGTMAEETAPAVLERHQGALYSLFPDHHVKK-----------YFDQV 148 (297)
T ss_dssp EEEEECCTTCSSEEEEEEEECTTSCE-E-----EEEEECCSBTTBCCTTCEEEEEECTTSCEEE-----------EEEEE
T ss_pred EEEEecCCCCCCCCCCCEEECCCCCE-E-----EecCCcccccccccCCCcEEEEEECCCCEEE-----------Eeecc
Confidence 44322111 11134678888776542 1 111111 23456676654332111 11111
Q ss_pred CCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEcc
Q 003087 160 PQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISP 239 (849)
Q Consensus 160 ~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSP 239 (849)
...+.++|+|||+.|+++.... + .|..|+++... .. +... ..+..... +......|+++|
T Consensus 149 -~~pngi~~spdg~~lyv~~~~~----------~--~i~~~~~d~~~-G~-~~~~---~~~~~~~~--~~~~p~g~~~d~ 208 (297)
T 3g4e_A 149 -DISNGLDWSLDHKIFYYIDSLS----------Y--SVDAFDYDLQT-GQ-ISNR---RSVYKLEK--EEQIPDGMCIDA 208 (297)
T ss_dssp -SBEEEEEECTTSCEEEEEEGGG----------T--EEEEEEECTTT-CC-EEEE---EEEEECCG--GGCEEEEEEEBT
T ss_pred -ccccceEEcCCCCEEEEecCCC----------C--cEEEEeccCCC-Cc-ccCc---EEEEECCC--CCCCCCeeEECC
Confidence 2368999999999886665432 1 37777764211 00 1000 01111111 223566899999
Q ss_pred CCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEe-cCC-EEEEEE
Q 003087 240 QGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWW-SDN-ILILAR 308 (849)
Q Consensus 240 DG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws-~D~-~la~a~ 308 (849)
||++.++...++.|..||..+++. +..+.. ....+.+++|. ||+ .|.+++
T Consensus 209 ~G~lwva~~~~~~v~~~d~~tG~~-~~~i~~------------------p~~~~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 209 EGKLWVACYNGGRVIRLDPVTGKR-LQTVKL------------------PVDKTTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp TSCEEEEEETTTEEEEECTTTCCE-EEEEEC------------------SSSBEEEEEEESGGGCEEEEEE
T ss_pred CCCEEEEEcCCCEEEEEcCCCceE-EEEEEC------------------CCCCceEEEEeCCCCCEEEEEc
Confidence 999998888889999999986643 333321 11347889998 775 455554
No 205
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.90 E-value=2.1e-07 Score=99.92 Aligned_cols=237 Identities=9% Similarity=0.038 Sum_probs=131.5
Q ss_pred cceEEEEEcCCCCeE-EEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCCccc
Q 003087 11 KKQVSLFISPRGERV-AVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANGEEI 88 (849)
Q Consensus 11 ~~v~slafSPdG~~L-Asas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~~~ 88 (849)
......+|+|||+.| .+.. ++.|..|+... . ...+.. ....+..++|+|||+++++...++.|.+|+.+|+.
T Consensus 45 ~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g---~-~~~~~~-~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~g~~- 118 (305)
T 3dr2_A 45 TWSEGPAWWEAQRTLVWSDLVGRRVLGWREDG---T-VDVLLD-ATAFTNGNAVDAQQRLVHCEHGRRAITRSDADGQA- 118 (305)
T ss_dssp SSEEEEEEEGGGTEEEEEETTTTEEEEEETTS---C-EEEEEE-SCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCE-
T ss_pred cCccCCeEeCCCCEEEEEECCCCEEEEEeCCC---C-EEEEeC-CCCccceeeECCCCCEEEEECCCCEEEEECCCCCE-
Confidence 456789999999954 4443 57888887532 1 223332 24567899999999988887777899999988653
Q ss_pred eeccccc-ccccccEEEEEecCCcccccccceeEEEEe-------------CCCcEEEEEecCCCCcccccccccCCcce
Q 003087 89 TRFTNKH-LKVSLPIIGLIAQDETDVQRSCLCSFTVFT-------------SDGFLHQIEISQDPSASISSASASSSGLT 154 (849)
Q Consensus 89 ~~l~~~~-~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s-------------~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~ 154 (849)
..+.... ......+.++++.+++..-.+ +..+ .+ ..+.|..++..++....
T Consensus 119 ~~~~~~~~~~~~~~~~~i~~d~dG~l~~t-d~~~--g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~------------ 183 (305)
T 3dr2_A 119 HLLVGRYAGKRLNSPNDLIVARDGAIWFT-DPPF--GLRKPSQGCPADPELAHHSVYRLPPDGSPLQR------------ 183 (305)
T ss_dssp EEEECEETTEECSCCCCEEECTTSCEEEE-CCSG--GGSCGGGSCCCCCSSSCEEEEEECSSSCCCEE------------
T ss_pred EEEEeccCCCccCCCCCEEECCCCCEEEe-CcCC--CccccccccccccccCCCeEEEEcCCCCcEEE------------
Confidence 3332211 111123556777665432110 0000 01 02334444443333211
Q ss_pred eccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccce
Q 003087 155 LRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPK 234 (849)
Q Consensus 155 l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~ 234 (849)
+. +. ...+.++|+|||+.|+++..... ..+...|..|++.+.. +... ..+... .......
T Consensus 184 ~~-~~-~~p~gl~~spdg~~lyv~~~~~~-------~~~~~~i~~~~~~~~~----l~~~---~~~~~~----~~~~pdg 243 (305)
T 3dr2_A 184 MA-DL-DHPNGLAFSPDEQTLYVSQTPEQ-------GHGSVEITAFAWRDGA----LHDR---RHFASV----PDGLPDG 243 (305)
T ss_dssp EE-EE-SSEEEEEECTTSSEEEEEECCC----------CCCEEEEEEEETTE----EEEE---EEEECC----SSSCCCS
T ss_pred Ee-cC-CCCcceEEcCCCCEEEEEecCCc-------CCCCCEEEEEEecCCC----ccCC---eEEEEC----CCCCCCe
Confidence 11 11 23688999999998877755410 0011247778776531 1100 011000 1123457
Q ss_pred EEEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EEEEEeCC
Q 003087 235 VLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LILARKSS 311 (849)
Q Consensus 235 vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~a~~dg 311 (849)
+++++||++.++. .+ .|.+|+..+. .+..+.. ...+.+++|.+|+. |.+++.++
T Consensus 244 i~~d~~G~lwv~~-~~-gv~~~~~~g~--~~~~~~~-------------------~~~~~~~~f~~d~~~L~it~~~~ 298 (305)
T 3dr2_A 244 FCVDRGGWLWSSS-GT-GVCVFDSDGQ--LLGHIPT-------------------PGTASNCTFDQAQQRLFITGGPC 298 (305)
T ss_dssp EEECTTSCEEECC-SS-EEEEECTTSC--EEEEEEC-------------------SSCCCEEEECTTSCEEEEEETTE
T ss_pred EEECCCCCEEEec-CC-cEEEECCCCC--EEEEEEC-------------------CCceeEEEEeCCCCEEEEEcCCe
Confidence 9999999966554 44 4999998654 2233321 12367899998874 65665543
No 206
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.88 E-value=7.5e-08 Score=107.30 Aligned_cols=244 Identities=12% Similarity=0.065 Sum_probs=143.7
Q ss_pred EEEEcCCCCeEEEEe-----------CCeEEEEecCCCCCcceeeeeecC------CCCEEEEEECCCCCEEEEEeC--C
Q 003087 15 SLFISPRGERVAVAA-----------VNQVTILQKDDDYQEPCGIFNCTG------LGASIYGAWSESHDVLGIVDD--T 75 (849)
Q Consensus 15 slafSPdG~~LAsas-----------~~~i~iw~~~~~~~~~~~~~~~~~------~~~v~~vafSPDG~~LAs~~~--d 75 (849)
.++|||||++|.+++ ++.|.+||... .+..+...... ...-..++|||||++|.++.. +
T Consensus 82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t--~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~ 159 (386)
T 3sjl_D 82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVT--LLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPA 159 (386)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT--CCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSS
T ss_pred cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCC--CeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCC
Confidence 499999999987764 46799999764 34444443211 012346999999999988863 6
Q ss_pred CcEEEEecC-CccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecC-CCCcccccccccCCcc
Q 003087 76 HTVYFFKAN-GEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQ-DPSASISSASASSSGL 153 (849)
Q Consensus 76 gtIrlWd~~-g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~-~~~~~~~~~~~~~~~~ 153 (849)
++|.++|+. ++.+.++.-. . . ..+++.+. ..|+..+.||.+-..++.+ +....... ..+
T Consensus 160 ~~VsVID~~t~~vv~tI~v~-----g-~-~~~~P~g~-------~~~~~~~~DG~~~~v~~~~~g~v~~~~~-----~~~ 220 (386)
T 3sjl_D 160 PAVGVVDLEGKAFKRMLDVP-----D-C-YHIFPTAP-------DTFFMHCRDGSLAKVAFGTEGTPEITHT-----EVF 220 (386)
T ss_dssp CEEEEEETTTTEEEEEEECC-----S-E-EEEEEEET-------TEEEEEETTSCEEEEECCSSSCCEEEEC-----CCC
T ss_pred CeEEEEECCCCcEEEEEECC-----C-c-ceeecCCC-------ceeEEECCCCCEEEEECCCCCeEEEeec-----cee
Confidence 899999997 5555555321 1 1 22332211 1255567888888887765 33311000 000
Q ss_pred eeccccCCce-EEEEE-cCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcC--cccc--eecc--ccceeeccCC
Q 003087 154 TLRRQFPQNV-ICTDY-HPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLE--LEQL--YTTQ--IEGLYCEPKG 225 (849)
Q Consensus 154 ~l~~~~~~~V-~svaf-sPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~--~~~l--~~~~--~~~~~~~~~g 225 (849)
. . . ...+ ...+| .|+|+++. .+.++ .|.+.|..+..- ..++ +..+ ..| +
T Consensus 221 ~-~-~-~~~~~~~~~~~~~dG~~~~-vs~~g-------------~V~v~d~~~~~~~v~~~~~~~~~~~~~~g-~----- 277 (386)
T 3sjl_D 221 H-P-E-DEFLINHPAYSQKAGRLVW-PTYTG-------------KIHQIDLSSGDAKFLPAVEALTEAERADG-W----- 277 (386)
T ss_dssp S-C-T-TSCBCSCCEEETTTTEEEE-EBTTS-------------EEEEEECTTSSCEECCCEESSCHHHHHTT-E-----
T ss_pred c-c-c-cccccccceeEcCCCcEEE-EeCCC-------------EEEEEECCCCcceeecceecccccccccc-c-----
Confidence 0 0 0 0112 22466 48998765 34444 266666654310 0001 0000 001 0
Q ss_pred CccccccceEEEccCCCEEEEEeC----------CCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEE
Q 003087 226 HEVQLAHPKVLISPQGKFVATSDT----------NGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITD 295 (849)
Q Consensus 226 ~~h~~~V~~vafSPDG~~LAs~s~----------Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~ 295 (849)
.-.+...++++|||+.|..+.. .++|.+.|+.+.+. ++.++.. ..+++
T Consensus 278 --~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv-~~~i~vg-------------------~~~~~ 335 (386)
T 3sjl_D 278 --RPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGER-LAKFEMG-------------------HEIDS 335 (386)
T ss_dssp --EECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE-EEEEEEE-------------------EEECE
T ss_pred --cCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeE-EEEEECC-------------------CCcce
Confidence 1124557999999999998753 25788888888765 4555421 24678
Q ss_pred EEEecCCE--EEEEE-eCCcEEEEEecCCccc
Q 003087 296 FAWWSDNI--LILAR-KSSIITMIDVLSGLKV 324 (849)
Q Consensus 296 vaws~D~~--la~a~-~dgti~lwdl~~~~~l 324 (849)
+++++|++ +.++. .+|+|.++|..+++.+
T Consensus 336 lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~ 367 (386)
T 3sjl_D 336 INVSQDEKPLLYALSTGDKTLYIHDAESGEEL 367 (386)
T ss_dssp EEECSSSSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred EEECCCCCeEEEEEcCCCCeEEEEECCCCcEE
Confidence 99999985 44443 4899999999999854
No 207
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.87 E-value=8.3e-08 Score=102.21 Aligned_cols=203 Identities=12% Similarity=0.063 Sum_probs=123.4
Q ss_pred cceEEEEEcCC-CCeEEEEeCCeEEEEecCCCCCcceee-eee-cC--CCCEEEEEECCCCCEEEEEeCC----------
Q 003087 11 KKQVSLFISPR-GERVAVAAVNQVTILQKDDDYQEPCGI-FNC-TG--LGASIYGAWSESHDVLGIVDDT---------- 75 (849)
Q Consensus 11 ~~v~slafSPd-G~~LAsas~~~i~iw~~~~~~~~~~~~-~~~-~~--~~~v~~vafSPDG~~LAs~~~d---------- 75 (849)
..+..++++|| |+++++..++.|.+|+.. + ..... ... .+ ...+..++++|||++.++...+
T Consensus 71 ~~~~~i~~~~~~g~l~v~~~~~~l~~~d~~-g--~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~ 147 (314)
T 1pjx_A 71 GIPAGCQCDRDANQLFVADMRLGLLVVQTD-G--TFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRS 147 (314)
T ss_dssp CCEEEEEECSSSSEEEEEETTTEEEEEETT-S--CEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBT
T ss_pred CCCceEEEecCCCcEEEEECCCCEEEEeCC-C--CEEEEEeccCCCccccCCcCEEECCCCCEEEEecCccccccccccc
Confidence 56889999999 887766666688888865 2 21111 111 01 2346899999999999887765
Q ss_pred -----CcEEEEecCCccceecccccccccccEEEEEec----CCcccccccceeEEEE-eCCCcEEEEEec-CCCCcccc
Q 003087 76 -----HTVYFFKANGEEITRFTNKHLKVSLPIIGLIAQ----DETDVQRSCLCSFTVF-TSDGFLHQIEIS-QDPSASIS 144 (849)
Q Consensus 76 -----gtIrlWd~~g~~~~~l~~~~~~~~~~V~~l~fs----~~~~~~~s~~~~~~~~-s~Dg~v~lw~~~-~~~~~~~~ 144 (849)
+.|..|+..|+. ..+..+ .....+++|+ +++.. +++. +.++.|..|++. .+......
T Consensus 148 ~~~~~~~l~~~~~~g~~-~~~~~~----~~~~~~i~~~~~~d~dg~~-------l~v~~~~~~~i~~~~~~~~g~~~~~~ 215 (314)
T 1pjx_A 148 MQEKFGSIYCFTTDGQM-IQVDTA----FQFPNGIAVRHMNDGRPYQ-------LIVAETPTKKLWSYDIKGPAKIENKK 215 (314)
T ss_dssp TSSSCEEEEEECTTSCE-EEEEEE----ESSEEEEEEEECTTSCEEE-------EEEEETTTTEEEEEEEEETTEEEEEE
T ss_pred ccCCCCeEEEECCCCCE-EEeccC----CCCcceEEEecccCCCCCE-------EEEEECCCCeEEEEECCCCCccccce
Confidence 567777766543 222111 1234677887 65432 3333 467889999986 33221100
Q ss_pred cccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccC
Q 003087 145 SASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPK 224 (849)
Q Consensus 145 ~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~ 224 (849)
. ...+.++....+..++++|+|++.++...++ .|..|+..++. .+. .+..
T Consensus 216 ~------~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~-------------~i~~~d~~~g~---~~~------~~~~-- 265 (314)
T 1pjx_A 216 V------WGHIPGTHEGGADGMDFDEDNNLLVANWGSS-------------HIEVFGPDGGQ---PKM------RIRC-- 265 (314)
T ss_dssp E------EEECCCCSSCEEEEEEEBTTCCEEEEEETTT-------------EEEEECTTCBS---CSE------EEEC--
T ss_pred E------EEECCCCCCCCCCceEECCCCCEEEEEcCCC-------------EEEEEcCCCCc---EeE------EEeC--
Confidence 0 0012212103478899999999887654443 37888776321 111 1111
Q ss_pred CCccccccceEEEccCCCEE-EEEeCCCcEEEEecCCC
Q 003087 225 GHEVQLAHPKVLISPQGKFV-ATSDTNGCLYIFEMDKD 261 (849)
Q Consensus 225 g~~h~~~V~~vafSPDG~~L-As~s~Dgtv~LWd~~~~ 261 (849)
+...+.+++|+|||+.| ++.+.++.|..|++...
T Consensus 266 ---~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 266 ---PFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp ---SSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred ---CCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 23467899999999954 55556789999998754
No 208
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.86 E-value=1e-07 Score=107.80 Aligned_cols=250 Identities=10% Similarity=-0.012 Sum_probs=145.0
Q ss_pred EEEEcCCCCeEEEEe-----------CCeEEEEecCCCCCcceeeeeecC------CCCEEEEEECCCCCEEEEEeC--C
Q 003087 15 SLFISPRGERVAVAA-----------VNQVTILQKDDDYQEPCGIFNCTG------LGASIYGAWSESHDVLGIVDD--T 75 (849)
Q Consensus 15 slafSPdG~~LAsas-----------~~~i~iw~~~~~~~~~~~~~~~~~------~~~v~~vafSPDG~~LAs~~~--d 75 (849)
.++|||||++|.++. ++.|.++|..+ .+..+.....+ ...-..++|||||++|.++.. +
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t--~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~ 199 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVT--FLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPA 199 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT--CCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSS
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCC--CcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCC
Confidence 899999999997774 46788998764 23444443210 012246899999999998874 6
Q ss_pred CcEEEEecC-CccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcce
Q 003087 76 HTVYFFKAN-GEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLT 154 (849)
Q Consensus 76 gtIrlWd~~-g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~ 154 (849)
++|.++|+. ++.+.++.-.. . ... .|++. ..++..+.||.+-..+..+++..... ...+.
T Consensus 200 ~~VsVID~~t~kvv~~I~v~g------~-~~~-~p~g~------~~~v~~~~dG~~~~V~~~~~~v~~~~-----~~~~~ 260 (426)
T 3c75_H 200 PAVGVVDLEGKTFDRMLDVPD------C-YHI-FPASP------TVFYMNCRDGSLARVDFADGETKVTN-----TEVFH 260 (426)
T ss_dssp CEEEEEETTTTEEEEEEECCS------E-EEE-EEEET------TEEEEEETTSSEEEEECCTTCCEEEE-----CCCCS
T ss_pred CeEEEEECCCCeEEEEEEcCC------c-eee-ccCCC------cEEEEEcCCCCEEEEECCCCcEEEEe-----eeeec
Confidence 899999997 45444543211 1 111 22111 12445577888777776433322100 00000
Q ss_pred eccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceecccc--ceeeccCCCcccccc
Q 003087 155 LRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIE--GLYCEPKGHEVQLAH 232 (849)
Q Consensus 155 l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~--~~~~~~~g~~h~~~V 232 (849)
.. ..+ ....++|+|+|..++.....+ .|.+.|+.+.. ...+...... ..+ . .+ ....+.
T Consensus 261 v~-~~p-~~~~~~~~~dg~~~~~~s~~g-------------~V~ViD~~~~~-~~v~~~~~~~~~~~i-~-~g-~~p~g~ 321 (426)
T 3c75_H 261 TE-DEL-LINHPAFSLRSGRLVWPTYTG-------------KIFQADLTAEG-ATFRAPIEALTEAER-A-DD-WRPGGW 321 (426)
T ss_dssp CT-TSC-BCSCCEECTTTCEEEEEBTTS-------------EEEEEEECSSC-EEECCCEESSCTTTG-G-GT-EEECSS
T ss_pred cC-CCc-eeeEeeecCCCCEEEEEeCCC-------------cEEEEeccCCc-eEEeeeeeecccccc-c-cc-cccCCc
Confidence 11 111 123467899998877765554 25666664421 0000000000 000 0 00 011234
Q ss_pred ceEEEccCCCEEEEEeC----------CCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCC
Q 003087 233 PKVLISPQGKFVATSDT----------NGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDN 302 (849)
Q Consensus 233 ~~vafSPDG~~LAs~s~----------Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~ 302 (849)
..++|+|||+.|..+.. +++|.+.|+.+.+. ++.++.. ..++.++|+|||
T Consensus 322 ~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kv-v~~I~vg-------------------~~P~gia~spDg 381 (426)
T 3c75_H 322 QQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGER-INKIELG-------------------HEIDSINVSQDA 381 (426)
T ss_dssp SCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE-EEEEEEE-------------------EEECEEEECCSS
T ss_pred eeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeE-EEEEECC-------------------CCcCeEEEccCC
Confidence 46899999998777643 46899999998765 4555421 136789999998
Q ss_pred E-E-EEEE-eCCcEEEEEecCCccc
Q 003087 303 I-L-ILAR-KSSIITMIDVLSGLKV 324 (849)
Q Consensus 303 ~-l-a~a~-~dgti~lwdl~~~~~l 324 (849)
+ + .++. .+++|.|+|+.+++.+
T Consensus 382 ~~~lyv~n~~s~~VsVID~~t~kvv 406 (426)
T 3c75_H 382 EPLLYALSAGTQTLHIYDAATGEEL 406 (426)
T ss_dssp SCEEEEEETTTTEEEEEETTTCCEE
T ss_pred CEEEEEEcCCCCeEEEEECCCCCEE
Confidence 7 4 4565 4899999999999854
No 209
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.82 E-value=1.5e-07 Score=103.17 Aligned_cols=251 Identities=9% Similarity=0.000 Sum_probs=141.5
Q ss_pred cceEEEEEcCCCCeEEEEe---CCeEEEEecCCCCCcceeeee------ecCCCCEEEEEECCCCCEEEEEeC-----CC
Q 003087 11 KKQVSLFISPRGERVAVAA---VNQVTILQKDDDYQEPCGIFN------CTGLGASIYGAWSESHDVLGIVDD-----TH 76 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas---~~~i~iw~~~~~~~~~~~~~~------~~~~~~v~~vafSPDG~~LAs~~~-----dg 76 (849)
..+..|+++|||+++++.. ++.++||...+ +.. ..+. ..+...+..|+|+|+|++.++-.. ++
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~--g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~ 93 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQ--DGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVP 93 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEET--TEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCC
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECC--CCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCC
Confidence 4688999999999998863 23256665542 221 1111 011346789999999998776544 57
Q ss_pred cEEEEecC-Cccceecccc-c-ccccccEEEEEecCC-cccccccceeEEEE-e---CCCcEEEEEecCCCCcccccc--
Q 003087 77 TVYFFKAN-GEEITRFTNK-H-LKVSLPIIGLIAQDE-TDVQRSCLCSFTVF-T---SDGFLHQIEISQDPSASISSA-- 146 (849)
Q Consensus 77 tIrlWd~~-g~~~~~l~~~-~-~~~~~~V~~l~fs~~-~~~~~s~~~~~~~~-s---~Dg~v~lw~~~~~~~~~~~~~-- 146 (849)
.|.+||+. |+.+.++... . ........+++|.++ +. +++. + .++.|.+|+..++........
T Consensus 94 ~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~--------~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~ 165 (343)
T 2qe8_A 94 KLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNF--------VYISDPAPDDKAALIRVDLQTGLAARVLQGYP 165 (343)
T ss_dssp EEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTE--------EEEEECCSGGGCEEEEEETTTCCEEEECTTCT
T ss_pred eEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCE--------EEEEcCccCCCCeEEEEECCCCCEEEEecCCC
Confidence 89999986 6644444321 1 111123567888753 32 2222 2 567888888876543222210
Q ss_pred cc-c-CCcceeccc-------------cCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCc--Ccc
Q 003087 147 SA-S-SSGLTLRRQ-------------FPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNL--ELE 209 (849)
Q Consensus 147 ~~-~-~~~~~l~~~-------------~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~--~~~ 209 (849)
.. . ...+...|. ....++.++|||||+.|+++...+ -++|++.... +.
T Consensus 166 ~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~--------------~~l~~~~~~~~~~~- 230 (343)
T 2qe8_A 166 GIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHS--------------TSMYRIKSADLSNL- 230 (343)
T ss_dssp TTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSC--------------SEEEEEEHHHHTCT-
T ss_pred cccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCC--------------CeEEEEEHHHhcCC-
Confidence 00 0 000011110 113479999999999998876654 2667765320 00
Q ss_pred cceeccccceeeccCCCccccccceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCC
Q 003087 210 QLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKP 289 (849)
Q Consensus 210 ~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~ 289 (849)
.+...+....+.. .| +......++++|||++.++...+++|..|+..+++ +...... ..
T Consensus 231 ~~~~~~~~~~~~~-~g--~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~--~~~~~~~----------------~~ 289 (343)
T 2qe8_A 231 QLTDAELGSKIER-YS--EKPICDGISIDKDHNIYVGDLAHSAIGVITSADRA--YKLLVTD----------------EK 289 (343)
T ss_dssp TCCHHHHHTTCEE-EE--ECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTE--EEEEEEC----------------GG
T ss_pred CCChhhhhcceEe-cc--cCCCCceEEECCCCCEEEEccCCCeEEEEECCCCC--EEEEEEC----------------Cc
Confidence 0000000000000 01 22245579999999999999999999999983332 2222100 01
Q ss_pred CCCcEEEEEecCCEEEEEE
Q 003087 290 ISDITDFAWWSDNILILAR 308 (849)
Q Consensus 290 ~~~v~~vaws~D~~la~a~ 308 (849)
...+.+++|.+|+.+.++.
T Consensus 290 ~~~p~~va~~~~g~l~v~~ 308 (343)
T 2qe8_A 290 LSWTDSFNFGSDGYLYFDC 308 (343)
T ss_dssp GSCEEEEEECTTSCEEEEE
T ss_pred eecCCeeEECCCCcEEEEe
Confidence 2347889998888765544
No 210
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.82 E-value=1.4e-06 Score=91.61 Aligned_cols=238 Identities=9% Similarity=0.004 Sum_probs=145.4
Q ss_pred cccccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeec-CCCCEEEEEECCCCCEEEEEeCCCcEEEEecC
Q 003087 7 PRKTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCT-GLGASIYGAWSESHDVLGIVDDTHTVYFFKAN 84 (849)
Q Consensus 7 ~~~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~-~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~ 84 (849)
|.....+.+++++|+|++.++.. ++.|..++... .. ..+... ....+..+++.|+|++.++...++.|..+|..
T Consensus 58 ~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~g---~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~ 133 (300)
T 2qc5_A 58 PTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKKG---GF-TEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD 133 (300)
T ss_dssp SSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTS---CE-EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT
T ss_pred CCCCCcceeEEECCCCCEEEEecCCCeEEEECCCC---Ce-EEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC
Confidence 33346789999999999877665 57888887552 21 122211 23567899999999999888878899999988
Q ss_pred CccceecccccccccccEEEEEecCCcccccccceeEEEEe-CCCcEEEEEecCCCCcccccccccCCcceeccccCCce
Q 003087 85 GEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFT-SDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNV 163 (849)
Q Consensus 85 g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s-~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V 163 (849)
|+.. .+.... ....+.++++.+++. +++.+ .++.|..++. ++..... .+.++ ...+
T Consensus 134 g~~~-~~~~~~--~~~~~~~i~~d~~g~--------l~v~~~~~~~i~~~~~-~g~~~~~----------~~~~~-~~~~ 190 (300)
T 2qc5_A 134 GTIY-EYDLPN--KGSYPAFITLGSDNA--------LWFTENQNNSIGRITN-TGKLEEY----------PLPTN-AAAP 190 (300)
T ss_dssp SCEE-EEECSS--TTCCEEEEEECTTSS--------EEEEETTTTEEEEECT-TCCEEEE----------ECSST-TCCE
T ss_pred CCEE-EccCCC--CCCCceeEEECCCCC--------EEEEecCCCeEEEECC-CCcEEEe----------eCCCC-CCCc
Confidence 6543 221110 113467888876543 22223 3567777776 3332111 11111 2358
Q ss_pred EEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCE
Q 003087 164 ICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKF 243 (849)
Q Consensus 164 ~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~ 243 (849)
.+++++|+|++.++....+ .|..++..+. ...+ . . .. +...+..|+++|+|++
T Consensus 191 ~~i~~d~~g~l~v~~~~~~-------------~i~~~~~~g~--~~~~-~--------~-~~--~~~~~~~i~~d~~g~l 243 (300)
T 2qc5_A 191 VGITSGNDGALWFVEIMGN-------------KIGRITTTGE--ISEY-D--------I-PT--PNARPHAITAGKNSEI 243 (300)
T ss_dssp EEEEECTTSSEEEEETTTT-------------EEEEECTTCC--EEEE-E--------C-SS--TTCCEEEEEECSTTCE
T ss_pred ceEEECCCCCEEEEccCCC-------------EEEEEcCCCc--EEEE-E--------C-CC--CCCCceEEEECCCCCE
Confidence 9999999998775543332 2666665221 0011 0 0 01 2345779999999998
Q ss_pred EEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCEEEEEEeCCcEEEEEe
Q 003087 244 VATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNILILARKSSIITMIDV 318 (849)
Q Consensus 244 LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~la~a~~dgti~lwdl 318 (849)
.++...++.|..|+..+. +..+... .....+.+++..++|.+.++..+ .|..++.
T Consensus 244 ~v~~~~~~~i~~~~~~g~---~~~~~~~----------------~~~~~~~~i~~~~~g~l~v~~~~-~i~~~~p 298 (300)
T 2qc5_A 244 WFTEWGANQIGRITNDNT---IQEYQLQ----------------TENAEPHGITFGKDGSVWFALKC-KIGKLNL 298 (300)
T ss_dssp EEEETTTTEEEEECTTSC---EEEEECC----------------STTCCCCCEEECTTSCEEEECSS-EEEEEEE
T ss_pred EEeccCCCeEEEECCCCc---EEEEECC----------------ccCCccceeEeCCCCCEEEEccC-ceEEeCC
Confidence 887777899999998432 2232210 01234677888899988777664 6666654
No 211
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.77 E-value=2.7e-06 Score=92.38 Aligned_cols=231 Identities=8% Similarity=0.001 Sum_probs=130.6
Q ss_pred ceEEEEEcCCCCeEEEE-e-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCCccce
Q 003087 12 KQVSLFISPRGERVAVA-A-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANGEEIT 89 (849)
Q Consensus 12 ~v~slafSPdG~~LAsa-s-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~~~~ 89 (849)
.....+|+||++.|... . ++.|.+|+..++ . ...+. ....+.+++|+|||+++++. .+ .|.+||..+..+.
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~--~-~~~~~--~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~ 122 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASG--R-KTVHA--LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLT 122 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTT--E-EEEEE--CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCC--c-EEEEE--CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEE
Confidence 35789999987665444 3 578988986542 1 22222 23468999999999988875 33 4999998654444
Q ss_pred ecccccc-cccccEEEEEecCCcccccccceeEEEEeC---CCcEEEEEecCCCCcccccccccCCcceeccccCCceEE
Q 003087 90 RFTNKHL-KVSLPIIGLIAQDETDVQRSCLCSFTVFTS---DGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVIC 165 (849)
Q Consensus 90 ~l~~~~~-~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~---Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~s 165 (849)
.+..... .....+.++++++++.. | +...+. .+...+|.+.++..... ..+. ...++
T Consensus 123 ~~~~~~~~~~~~~~~~i~~d~~G~l-~-----v~~~~~~~~~~~~~l~~~~~g~~~~~------------~~~~-~~~~~ 183 (326)
T 2ghs_A 123 LHAELESDLPGNRSNDGRMHPSGAL-W-----IGTMGRKAETGAGSIYHVAKGKVTKL------------FADI-SIPNS 183 (326)
T ss_dssp EEECSSTTCTTEEEEEEEECTTSCE-E-----EEEEETTCCTTCEEEEEEETTEEEEE------------EEEE-SSEEE
T ss_pred EEeeCCCCCCCCCCCCEEECCCCCE-E-----EEeCCCcCCCCceEEEEEeCCcEEEe------------eCCC-cccCC
Confidence 3322110 11134778888876542 1 111111 12344555442222111 1111 24689
Q ss_pred EEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEec--CCcCcccceeccccceeeccCCCccccccceEEEccCCCE
Q 003087 166 TDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRC--HNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKF 243 (849)
Q Consensus 166 vafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~--~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~ 243 (849)
++|+|||+.|+++.... + .|.+|+++ ++..+... ..+....+ +......+++++||++
T Consensus 184 i~~s~dg~~lyv~~~~~----------~--~I~~~d~~~~~Gl~~~~~------~~~~~~~~--~~~~p~gi~~d~~G~l 243 (326)
T 2ghs_A 184 ICFSPDGTTGYFVDTKV----------N--RLMRVPLDARTGLPTGKA------EVFIDSTG--IKGGMDGSVCDAEGHI 243 (326)
T ss_dssp EEECTTSCEEEEEETTT----------C--EEEEEEBCTTTCCBSSCC------EEEEECTT--SSSEEEEEEECTTSCE
T ss_pred eEEcCCCCEEEEEECCC----------C--EEEEEEcccccCCcccCc------eEEEECCC--CCCCCCeeEECCCCCE
Confidence 99999999887664432 1 37778765 22011100 01111111 1234568999999999
Q ss_pred EEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEe-cCC-EEEEEE
Q 003087 244 VATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWW-SDN-ILILAR 308 (849)
Q Consensus 244 LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws-~D~-~la~a~ 308 (849)
.++...++.|..|+..+. . +..+.. ....+.+++|. +|+ .|.+++
T Consensus 244 wva~~~~~~v~~~d~~g~-~-~~~i~~------------------~~~~~~~~af~g~d~~~L~vt~ 290 (326)
T 2ghs_A 244 WNARWGEGAVDRYDTDGN-H-IARYEV------------------PGKQTTCPAFIGPDASRLLVTS 290 (326)
T ss_dssp EEEEETTTEEEEECTTCC-E-EEEEEC------------------SCSBEEEEEEESTTSCEEEEEE
T ss_pred EEEEeCCCEEEEECCCCC-E-EEEEEC------------------CCCCcEEEEEecCCCCEEEEEe
Confidence 888777889999998543 2 223221 11347889998 775 454544
No 212
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.70 E-value=1.1e-07 Score=105.72 Aligned_cols=244 Identities=8% Similarity=-0.090 Sum_probs=133.8
Q ss_pred EEEEcCCCCeEEEEe-----------CCeEEEEecCCCCCcceeeeeecCC------CCEEEEEECCCCCEEEEEeC--C
Q 003087 15 SLFISPRGERVAVAA-----------VNQVTILQKDDDYQEPCGIFNCTGL------GASIYGAWSESHDVLGIVDD--T 75 (849)
Q Consensus 15 slafSPdG~~LAsas-----------~~~i~iw~~~~~~~~~~~~~~~~~~------~~v~~vafSPDG~~LAs~~~--d 75 (849)
.++|||||++|.++. +++|.+||... .+..++....+. ..-..++|||||++|.++.. +
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T--~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~ 146 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVT--FLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSS 146 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTT--CCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSS
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCC--CCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCC
Confidence 799999999998885 47899999764 344555432210 12357999999999999874 4
Q ss_pred CcEEE--EecCCccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecC-----CCCcccccccc
Q 003087 76 HTVYF--FKANGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQ-----DPSASISSASA 148 (849)
Q Consensus 76 gtIrl--Wd~~g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~-----~~~~~~~~~~~ 148 (849)
++|.+ ||+.. +.++.-.. .+ .+.|++.. .++..+.||.+...++.+ ++.... .
T Consensus 147 ~~v~V~~iD~~t--v~~i~v~~-----~~---~~~p~g~~------~~~~~~~dg~~~~vd~~~~~~~~~~v~~~-~--- 206 (368)
T 1mda_H 147 AAAGLSVPGASD--DQLTKSAS-----CF---HIHPGAAA------THYLGSCPASLAASDLAAAPAAAGIVGAQ-C--- 206 (368)
T ss_dssp CEEEEEETTTEE--EEEEECSS-----CC---CCEEEETT------EEECCCCTTSCEEEECCSSCCCCEECCCC-S---
T ss_pred CeEEEEEEchhh--ceEEECCC-----ce---EEccCCCe------EEEEEcCCCCEEEEECccccccCCeEEEE-e---
Confidence 67888 98855 33332110 00 11121111 123346788887777765 221100 0
Q ss_pred cCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCcc
Q 003087 149 SSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEV 228 (849)
Q Consensus 149 ~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h 228 (849)
...+.. +. .+. + +|++..++.++. ++ |..-|..+... ..+........-....+ ..
T Consensus 207 -t~~i~v-g~--~P~---~-~~~~~~~~~vs~-~~-------------V~viD~~~~~~-~v~~~~~~~~~~~~~~~-~~ 262 (368)
T 1mda_H 207 -TGAQNC-SS--QAA---Q-ANYPGMLVWAVA-SS-------------ILQGDIPAAGA-TMKAAIDGNESGRKADN-FR 262 (368)
T ss_dssp -CTTSCB-CS--CCE---E-ETTTTEEEECBS-SC-------------CEEEECCSSCC-EEECCCCSSCTHHHHTT-EE
T ss_pred -eeeeeC-CC--Ccc---c-cccCCEEEEEcC-CE-------------EEEEECCCCcc-eEEEEEEeccccccccc-cc
Confidence 000011 11 122 3 666665555555 52 44444432110 00000000000000000 00
Q ss_pred ccccceEEEccCCCEEEEEeC---------CCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEe
Q 003087 229 QLAHPKVLISPQGKFVATSDT---------NGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWW 299 (849)
Q Consensus 229 ~~~V~~vafSPDG~~LAs~s~---------Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws 299 (849)
..+...++|+|||+.|..+.. ++.+.++|+.+.+. +..++.. ..+..++|+
T Consensus 263 p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~v-v~~i~vg-------------------~~p~gi~~s 322 (368)
T 1mda_H 263 SAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQT-SGPISNG-------------------HDSDAIIAA 322 (368)
T ss_dssp ECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCE-EECCEEE-------------------EEECEEEEC
T ss_pred cCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeE-EEEEECC-------------------CCcceEEEC
Confidence 112334899999999887543 23566999998764 4555421 136789999
Q ss_pred cCCE-EEEE-E-eCCcEEEEEecCCccc
Q 003087 300 SDNI-LILA-R-KSSIITMIDVLSGLKV 324 (849)
Q Consensus 300 ~D~~-la~a-~-~dgti~lwdl~~~~~l 324 (849)
|||+ +.++ . .+++|.|+|+.+++.+
T Consensus 323 ~Dg~~l~va~~~~~~~VsVID~~t~kvv 350 (368)
T 1mda_H 323 QDGASDNYANSAGTEVLDIYDAASDQDQ 350 (368)
T ss_dssp CSSSCEEEEEETTTTEEEEEESSSCEEE
T ss_pred CCCCEEEEEccCCCCeEEEEECCCCcEE
Confidence 9986 5554 4 4899999999998854
No 213
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.68 E-value=9.4e-08 Score=106.76 Aligned_cols=184 Identities=10% Similarity=0.016 Sum_probs=117.4
Q ss_pred CEEEEEECCCCCEEEEEeCCCcEEEEecCCcc--ce----eccc-ccccccccEEEEEecCCcccccccceeEEEEeCCC
Q 003087 56 ASIYGAWSESHDVLGIVDDTHTVYFFKANGEE--IT----RFTN-KHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDG 128 (849)
Q Consensus 56 ~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~~--~~----~l~~-~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg 128 (849)
.+..+++|+.+.++++|+.++ +++|++..-. +. .... ....+.. |..|+| + +. .++++ .+|
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f-d-~~-------~L~v~-~~~ 106 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF-H-GD-------QVLVS-TRN 106 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE-E-TT-------EEEEE-ESS
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE-C-CC-------EEEEE-cCC
Confidence 578899999999999999985 6679864211 00 0111 1112335 889999 3 22 24554 889
Q ss_pred cEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCc
Q 003087 129 FLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLEL 208 (849)
Q Consensus 129 ~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~ 208 (849)
.|++|++..-..... +. .+...|.++.+.+.. +|++..|+ .|.+|++..+..
T Consensus 107 ~l~v~dv~sl~~~~~-----------~~-~~~~~v~~i~~~~p~--~av~~~dG-------------~L~v~dl~~~~~- 158 (388)
T 1xip_A 107 ALYSLDLEELSEFRT-----------VT-SFEKPVFQLKNVNNT--LVILNSVN-------------DLSALDLRTKST- 158 (388)
T ss_dssp EEEEEESSSTTCEEE-----------EE-ECSSCEEEEEECSSE--EEEEETTS-------------EEEEEETTTCCE-
T ss_pred cEEEEEchhhhccCc-----------cc-eeecceeeEEecCCC--EEEEECCC-------------CEEEEEccCCcc-
Confidence 999999875332111 11 234468888877653 77787886 389999875421
Q ss_pred ccceeccccceeeccCCCccccccceEEEccCCCEEEEEeCCCcEEEEecCCCccc-ccccccccccccccccccCCCCC
Q 003087 209 EQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFS-LSKFACGERFDLQVADSLFDGRT 287 (849)
Q Consensus 209 ~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~-l~~~~~~~~~~~~~~~~l~~~~~ 287 (849)
.. +...|.+++|||+| ++.+..||++++|+.++.... .+.++.-. .+..+ .
T Consensus 159 ~~-----------------~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp--------~~~~~-~ 210 (388)
T 1xip_A 159 KQ-----------------LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPS--------ELEEL-P 210 (388)
T ss_dssp EE-----------------EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCH--------HHHTS-C
T ss_pred cc-----------------ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCc--------ccccc-c
Confidence 00 33479999999999 678999999999988876321 12232110 11100 1
Q ss_pred CCCCCcEEEEEecCCEEEEE
Q 003087 288 KPISDITDFAWWSDNILILA 307 (849)
Q Consensus 288 ~~~~~v~~vaws~D~~la~a 307 (849)
.+...|.+|.|.+++..+++
T Consensus 211 ~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 211 VEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp TTTSEEEEEEESSSSEEEEE
T ss_pred CCCeeEEEEEEecCCeEEEE
Confidence 13467999999999986554
No 214
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.66 E-value=3.1e-07 Score=110.61 Aligned_cols=203 Identities=9% Similarity=0.024 Sum_probs=113.4
Q ss_pred CCEEEEEECCCCCEEEEE-----eCCCcEEEEecCCccceecccccccccccEEEEEecCCcccccccceeEEEEeCCC-
Q 003087 55 GASIYGAWSESHDVLGIV-----DDTHTVYFFKANGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDG- 128 (849)
Q Consensus 55 ~~v~~vafSPDG~~LAs~-----~~dgtIrlWd~~g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg- 128 (849)
..+..++|||||++||.+ +...+|++||+.+.+......... ...+++|+ |+. .|+..+.++
T Consensus 129 ~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~----k~~~~~Ws-Dg~-------~l~y~~~~~~ 196 (693)
T 3iuj_A 129 TALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDV----KFSGISWL-GNE-------GFFYSSYDKP 196 (693)
T ss_dssp CEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEE----ESCCCEEE-TTT-------EEEEEESSCC
T ss_pred EEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCc----eeccEEEe-CCC-------EEEEEEecCc
Confidence 356789999999999953 333689999998554322211000 01234555 332 244445553
Q ss_pred ------------cEEEEEecCCCCcc--cccccccCCcceeccc-cCCceEEEEEcCCCceEEEEecCCCCccccCCCCC
Q 003087 129 ------------FLHQIEISQDPSAS--ISSASASSSGLTLRRQ-FPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSG 193 (849)
Q Consensus 129 ------------~v~lw~~~~~~~~~--~~~~~~~~~~~~l~~~-~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G 193 (849)
.|.+|++.++.... +++ .. . ++..+.++.|||||+.|+.....++ .
T Consensus 197 ~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~---------~~-~~~~~~~~~~~~SpDg~~l~~~~~~~~---------~ 257 (693)
T 3iuj_A 197 DGSELSARTDQHKVYFHRLGTAQEDDRLVFG---------AI-PAQHHRYVGATVTEDDRFLLISAANST---------S 257 (693)
T ss_dssp C-------CCCCEEEEEETTSCGGGCEEEES---------CS-GGGCCSEEEEEECTTSCEEEEEEESSS---------S
T ss_pred ccccccccCCCcEEEEEECCCCcccceEEEe---------cC-CCCCeEEEEEEEcCCCCEEEEEEccCC---------C
Confidence 38889887654321 111 11 1 2335788999999998876554431 1
Q ss_pred CceeeEEEecCCc-CcccceeccccceeeccCCCccccccceEEEccCCCEEEEEe-CC---CcEEEEecCCCccccccc
Q 003087 194 PCCISLWRRCHNL-ELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSD-TN---GCLYIFEMDKDNFSLSKF 268 (849)
Q Consensus 194 ~~~I~lW~~~~~~-~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s-~D---gtv~LWd~~~~~~~l~~~ 268 (849)
...|.+|++.++. ....+.. +.+.+... |+|+|..|+..+ .+ +.|..|++.+... ..|
T Consensus 258 ~~~i~~~d~~~~~~~~~~l~~--------------~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~--~~~ 320 (693)
T 3iuj_A 258 GNRLYVKDLSQENAPLLTVQG--------------DLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGP--AHW 320 (693)
T ss_dssp CCEEEEEETTSTTCCCEEEEC--------------SSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCG--GGC
T ss_pred CcEEEEEECCCCCCceEEEeC--------------CCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCc--ccc
Confidence 1247788876542 1122211 23344444 677777665544 33 5788888887532 123
Q ss_pred ccccccccccccccCCCCCCCCCCcEEEEEecCC-EEEEE-EeCC--cEEEEEecCCc
Q 003087 269 ACGERFDLQVADSLFDGRTKPISDITDFAWWSDN-ILILA-RKSS--IITMIDVLSGL 322 (849)
Q Consensus 269 ~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~-~la~a-~~dg--ti~lwdl~~~~ 322 (849)
. .+.++ ...+. .|++++ .|+.. ..+| .|.+|++.++.
T Consensus 321 ~-----------~l~~~----~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~ 361 (693)
T 3iuj_A 321 R-----------DLIPE----RQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKR 361 (693)
T ss_dssp E-----------EEECC----CSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCE
T ss_pred E-----------EEecC----CCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCe
Confidence 2 12222 12233 778876 45554 4555 68889887654
No 215
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.65 E-value=6.4e-07 Score=97.43 Aligned_cols=204 Identities=10% Similarity=0.060 Sum_probs=120.9
Q ss_pred cceEEEEEcCCCCeEEEE-eCCeEEEEecCCCCCcceeeeeecC----CCCEEEEEECCCCCEEEEEe-CCCcEEEEecC
Q 003087 11 KKQVSLFISPRGERVAVA-AVNQVTILQKDDDYQEPCGIFNCTG----LGASIYGAWSESHDVLGIVD-DTHTVYFFKAN 84 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsa-s~~~i~iw~~~~~~~~~~~~~~~~~----~~~v~~vafSPDG~~LAs~~-~dgtIrlWd~~ 84 (849)
..+..|+|||||+..++. .++.|.+||..+. +....+.... ......+++ .+|+++++.. .+++|.+||..
T Consensus 84 ~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~--~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~ 160 (328)
T 3dsm_A 84 TSPRYIHFLSDEKAYVTQIWDYRIFIINPKTY--EITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTE 160 (328)
T ss_dssp SSEEEEEEEETTEEEEEEBSCSEEEEEETTTT--EEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETT
T ss_pred CCCcEEEEeCCCeEEEEECCCCeEEEEECCCC--eEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECC
Confidence 567899999999665555 3689999997642 2333332111 013456777 4555555544 48999999987
Q ss_pred -CccceecccccccccccEEEEEecCCcccccccceeEEEEeC----------CCcEEEEEecCCCCcccccccccCCcc
Q 003087 85 -GEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTS----------DGFLHQIEISQDPSASISSASASSSGL 153 (849)
Q Consensus 85 -g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~----------Dg~v~lw~~~~~~~~~~~~~~~~~~~~ 153 (849)
++.+.++... ....++++++++.. +++... .+.|.++|..+++....+.
T Consensus 161 t~~~~~~i~~g-----~~p~~i~~~~dG~l-------~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~-------- 220 (328)
T 3dsm_A 161 TDKVVDELTIG-----IQPTSLVMDKYNKM-------WTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFK-------- 220 (328)
T ss_dssp TTEEEEEEECS-----SCBCCCEECTTSEE-------EEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEE--------
T ss_pred CCeEEEEEEcC-----CCccceEEcCCCCE-------EEEECCCccCCccccCCceEEEEECCCCeEEEEEe--------
Confidence 5554444321 12345677665432 112122 2689999987655432211
Q ss_pred eeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccc
Q 003087 154 TLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHP 233 (849)
Q Consensus 154 ~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~ 233 (849)
+.. ....+.++|+|||+.|.++.. . |..||..++.-. .. ..+. . +.....
T Consensus 221 -~~~--g~~p~~la~~~d~~~lyv~~~-~--------------v~~~d~~t~~~~----~~---~~~~---~--~~~~p~ 270 (328)
T 3dsm_A 221 -FKL--GDWPSEVQLNGTRDTLYWINN-D--------------IWRMPVEADRVP----VR---PFLE---F--RDTKYY 270 (328)
T ss_dssp -CCT--TCCCEEEEECTTSCEEEEESS-S--------------EEEEETTCSSCC----SS---CSBC---C--CSSCEE
T ss_pred -cCC--CCCceeEEEecCCCEEEEEcc-E--------------EEEEECCCCcee----ee---eeec---C--CCCceE
Confidence 111 124799999999999987643 2 777887654210 00 0010 0 123567
Q ss_pred eEEEcc-CCCEEEEE----eCCCcEEEEecCCCcccccccc
Q 003087 234 KVLISP-QGKFVATS----DTNGCLYIFEMDKDNFSLSKFA 269 (849)
Q Consensus 234 ~vafSP-DG~~LAs~----s~Dgtv~LWd~~~~~~~l~~~~ 269 (849)
.|+++| +|++.++. ..+|+|.+||.. ++. ++.++
T Consensus 271 gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~-~~~i~ 309 (328)
T 3dsm_A 271 GLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKL-IDEFY 309 (328)
T ss_dssp EEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCE-EEEEE
T ss_pred EEEEcCCCCeEEEEcccccccCCEEEEECCC-CCE-EEEEE
Confidence 899999 55666665 578999999998 433 45554
No 216
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.59 E-value=1.6e-06 Score=92.71 Aligned_cols=191 Identities=8% Similarity=-0.048 Sum_probs=109.7
Q ss_pred cceEEEEEcCCCCeEEEEeCCeEEEEecCCCCCcceeeeee--cC--CCCEEEEEECCCCCEEEEEeCC---------Cc
Q 003087 11 KKQVSLFISPRGERVAVAAVNQVTILQKDDDYQEPCGIFNC--TG--LGASIYGAWSESHDVLGIVDDT---------HT 77 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas~~~i~iw~~~~~~~~~~~~~~~--~~--~~~v~~vafSPDG~~LAs~~~d---------gt 77 (849)
..+.+++|+|||+++++ .++.|.+++..++ . ...+.. .+ ...+..++++|||++.++.... ++
T Consensus 54 ~~~~~i~~~~dG~l~v~-~~~~l~~~d~~~g--~-~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~ 129 (297)
T 3g4e_A 54 APVSSVALRQSGGYVAT-IGTKFCALNWKEQ--S-AVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQ 129 (297)
T ss_dssp SCEEEEEEBTTSSEEEE-ETTEEEEEETTTT--E-EEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTC
T ss_pred CceEEEEECCCCCEEEE-ECCeEEEEECCCC--c-EEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCC
Confidence 56889999999996654 4778889987543 1 111111 11 2346789999999988865332 23
Q ss_pred EEEEec--CCccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEec--CCCCcccccccccCCcc
Q 003087 78 VYFFKA--NGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEIS--QDPSASISSASASSSGL 153 (849)
Q Consensus 78 IrlWd~--~g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~--~~~~~~~~~~~~~~~~~ 153 (849)
.+||.+ .|+. ..+... . ....+++|+|++... +++-+.++.|..|++. ++..... . . ..
T Consensus 130 ~~l~~~d~~g~~-~~~~~~-~---~~pngi~~spdg~~l------yv~~~~~~~i~~~~~d~~~G~~~~~-~-~----~~ 192 (297)
T 3g4e_A 130 GALYSLFPDHHV-KKYFDQ-V---DISNGLDWSLDHKIF------YYIDSLSYSVDAFDYDLQTGQISNR-R-S----VY 192 (297)
T ss_dssp EEEEEECTTSCE-EEEEEE-E---SBEEEEEECTTSCEE------EEEEGGGTEEEEEEECTTTCCEEEE-E-E----EE
T ss_pred cEEEEEECCCCE-EEEeec-c---ccccceEEcCCCCEE------EEecCCCCcEEEEeccCCCCcccCc-E-E----EE
Confidence 345544 4543 222211 1 235689998865421 1222567889999874 3332100 0 0 01
Q ss_pred eeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccc
Q 003087 154 TLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHP 233 (849)
Q Consensus 154 ~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~ 233 (849)
.+.. .......++++++|++.++....+ .|..|+..++. .+ ..+.. +...+.
T Consensus 193 ~~~~-~~~~p~g~~~d~~G~lwva~~~~~-------------~v~~~d~~tG~---~~------~~i~~-----p~~~~t 244 (297)
T 3g4e_A 193 KLEK-EEQIPDGMCIDAEGKLWVACYNGG-------------RVIRLDPVTGK---RL------QTVKL-----PVDKTT 244 (297)
T ss_dssp ECCG-GGCEEEEEEEBTTSCEEEEEETTT-------------EEEEECTTTCC---EE------EEEEC-----SSSBEE
T ss_pred ECCC-CCCCCCeeEECCCCCEEEEEcCCC-------------EEEEEcCCCce---EE------EEEEC-----CCCCce
Confidence 1111 123578999999998776554333 26777765331 11 11111 224678
Q ss_pred eEEEc-cCCCEEEEEeCC
Q 003087 234 KVLIS-PQGKFVATSDTN 250 (849)
Q Consensus 234 ~vafS-PDG~~LAs~s~D 250 (849)
+++|+ ||++.|..++..
T Consensus 245 ~~~f~g~d~~~L~vt~~~ 262 (297)
T 3g4e_A 245 SCCFGGKNYSEMYVTCAR 262 (297)
T ss_dssp EEEEESGGGCEEEEEEBC
T ss_pred EEEEeCCCCCEEEEEcCC
Confidence 99999 999987766553
No 217
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.54 E-value=2.9e-06 Score=95.53 Aligned_cols=216 Identities=12% Similarity=0.082 Sum_probs=124.4
Q ss_pred CEEEEEECCCCCEEEEEeCCCcEEEEecCCccceecccccccccccEEEEEecCCcccccccceeEEEEeCCC--cEEEE
Q 003087 56 ASIYGAWSESHDVLGIVDDTHTVYFFKANGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDG--FLHQI 133 (849)
Q Consensus 56 ~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg--~v~lw 133 (849)
....|+|+|||+++++...++.|++||..+..+.++.... .... ++|++++. .+++...++ .|..+
T Consensus 132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~----~~~~-ia~~~~g~-------~l~~~d~~~~~~I~~~ 199 (409)
T 3hrp_A 132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGF----KGGK-PAVTKDKQ-------RVYSIGWEGTHTVYVY 199 (409)
T ss_dssp CEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETC----CBCB-CEECTTSS-------EEEEEBSSTTCEEEEE
T ss_pred CceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccC----CCCc-eeEecCCC-------cEEEEecCCCceEEEE
Confidence 4579999999999998888899999999866655553321 1122 77777543 244445555 67777
Q ss_pred EecCCCCcccccccccCCcceeccccCCceEEEEEcC-CCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccce
Q 003087 134 EISQDPSASISSASASSSGLTLRRQFPQNVICTDYHP-ELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLY 212 (849)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsP-dg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~ 212 (849)
+...+....... .+..+....+.+++++| +|.+. ++..++ .|..|+..++. ..+.
T Consensus 200 d~~~~~~~~~~g--------~~~~~~~~~p~~iav~p~~g~ly-v~d~~~-------------~I~~~d~~~~~--~~~~ 255 (409)
T 3hrp_A 200 MKASGWAPTRIG--------QLGSTFSGKIGAVALDETEEWLY-FVDSNK-------------NFGRFNVKTQE--VTLI 255 (409)
T ss_dssp EGGGTTCEEEEE--------ECCTTSCSCCCBCEECTTSSEEE-EECTTC-------------EEEEEETTTCC--EEEE
T ss_pred EcCCCceeEEee--------eccchhcCCcEEEEEeCCCCeEE-EEECCC-------------cEEEEECCCCC--EEEE
Confidence 765433211110 00011223578899999 56555 443332 36777766542 1111
Q ss_pred eccccceeeccCCCcccccc--ceEEEcc-CCCEEEEEeCCCcEEEEecCCCccccccccccc-ccccccccccCCCCCC
Q 003087 213 TTQIEGLYCEPKGHEVQLAH--PKVLISP-QGKFVATSDTNGCLYIFEMDKDNFSLSKFACGE-RFDLQVADSLFDGRTK 288 (849)
Q Consensus 213 ~~~~~~~~~~~~g~~h~~~V--~~vafSP-DG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~-~~~~~~~~~l~~~~~~ 288 (849)
... + ..+ +...- ..++|+| +|.+.++-..+++|+.|+.++. +..+.... .... .+.... ..
T Consensus 256 ~~~--~----~~g--~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~---~~~~~g~~~~~g~--~dg~~~--~~ 320 (409)
T 3hrp_A 256 KQL--E----LSG--SLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE---CEWFCGSATQKTV--QDGLRE--EA 320 (409)
T ss_dssp EEC--C----CCS--CCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC---EEEEEECTTCCSC--BCEEGG--GC
T ss_pred ecc--c----ccC--CCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC---EEEEEeCCCCCCc--CCCccc--cc
Confidence 000 0 011 11122 2899999 5777777777899999998764 22222110 0000 000000 01
Q ss_pred CCCCcEEEEEecCCEEEEEE--eCCcEEEEEecCCc
Q 003087 289 PISDITDFAWWSDNILILAR--KSSIITMIDVLSGL 322 (849)
Q Consensus 289 ~~~~v~~vaws~D~~la~a~--~dgti~lwdl~~~~ 322 (849)
....+..+++.+||.|.++. .++.|++|++.+++
T Consensus 321 ~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~ 356 (409)
T 3hrp_A 321 LFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGY 356 (409)
T ss_dssp BCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTE
T ss_pred EeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCE
Confidence 13457899999999876664 57799999987775
No 218
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.52 E-value=2e-06 Score=92.22 Aligned_cols=188 Identities=11% Similarity=-0.020 Sum_probs=111.6
Q ss_pred cceEEEEEcCCCCeEEEEeC-CeEEEEecCCCCCcceeeee--ecC--CCCEEEEEECCCCCEEEE----EeC-------
Q 003087 11 KKQVSLFISPRGERVAVAAV-NQVTILQKDDDYQEPCGIFN--CTG--LGASIYGAWSESHDVLGI----VDD------- 74 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas~-~~i~iw~~~~~~~~~~~~~~--~~~--~~~v~~vafSPDG~~LAs----~~~------- 74 (849)
+.+..++++|||+++++... +.|.+++... .. ..+. ..+ ...+..++++|||++.++ |..
T Consensus 86 ~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~g---~~-~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~ 161 (305)
T 3dr2_A 86 AFTNGNAVDAQQRLVHCEHGRRAITRSDADG---QA-HLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCP 161 (305)
T ss_dssp SCEEEEEECTTSCEEEEETTTTEEEEECTTS---CE-EEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCC
T ss_pred CccceeeECCCCCEEEEECCCCEEEEECCCC---CE-EEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccc
Confidence 45789999999998776644 6888888642 21 1111 111 234568999999999987 332
Q ss_pred ------CCcEEEEecCCccceecccccccccccEEEEEecCCcccccccceeEEEEeCC------CcEEEEEecCCCCcc
Q 003087 75 ------THTVYFFKANGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSD------GFLHQIEISQDPSAS 142 (849)
Q Consensus 75 ------dgtIrlWd~~g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~D------g~v~lw~~~~~~~~~ 142 (849)
.+.|..+|..+..+..+. . . ....+++|+|++.. +++.... +.|..|++..+.. .
T Consensus 162 ~~~~~~~~~v~~~d~~~g~~~~~~-~-~---~~p~gl~~spdg~~-------lyv~~~~~~~~~~~~i~~~~~~~~~l-~ 228 (305)
T 3dr2_A 162 ADPELAHHSVYRLPPDGSPLQRMA-D-L---DHPNGLAFSPDEQT-------LYVSQTPEQGHGSVEITAFAWRDGAL-H 228 (305)
T ss_dssp CCCSSSCEEEEEECSSSCCCEEEE-E-E---SSEEEEEECTTSSE-------EEEEECCC---CCCEEEEEEEETTEE-E
T ss_pred cccccCCCeEEEEcCCCCcEEEEe-c-C---CCCcceEEcCCCCE-------EEEEecCCcCCCCCEEEEEEecCCCc-c
Confidence 256777787533334332 1 1 23568999887642 3333333 6899999875441 1
Q ss_pred cccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeec
Q 003087 143 ISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCE 222 (849)
Q Consensus 143 ~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~ 222 (849)
... .+..........++++++|++.+ +..+ .|.+|+..+. .+ +.+..
T Consensus 229 ~~~--------~~~~~~~~~pdgi~~d~~G~lwv-~~~~--------------gv~~~~~~g~----~~------~~~~~ 275 (305)
T 3dr2_A 229 DRR--------HFASVPDGLPDGFCVDRGGWLWS-SSGT--------------GVCVFDSDGQ----LL------GHIPT 275 (305)
T ss_dssp EEE--------EEECCSSSCCCSEEECTTSCEEE-CCSS--------------EEEEECTTSC----EE------EEEEC
T ss_pred CCe--------EEEECCCCCCCeEEECCCCCEEE-ecCC--------------cEEEECCCCC----EE------EEEEC
Confidence 000 01000112356789999999654 3333 2777776442 11 11111
Q ss_pred cCCCccccccceEEEccCCCEEEEEeCCCcEE
Q 003087 223 PKGHEVQLAHPKVLISPQGKFVATSDTNGCLY 254 (849)
Q Consensus 223 ~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~ 254 (849)
+ ..+.+++|+|||+.|..++.++..+
T Consensus 276 -----~-~~~~~~~f~~d~~~L~it~~~~l~~ 301 (305)
T 3dr2_A 276 -----P-GTASNCTFDQAQQRLFITGGPCLWM 301 (305)
T ss_dssp -----S-SCCCEEEECTTSCEEEEEETTEEEE
T ss_pred -----C-CceeEEEEeCCCCEEEEEcCCeEEE
Confidence 1 2578999999999988887765443
No 219
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.50 E-value=9.3e-06 Score=90.25 Aligned_cols=215 Identities=7% Similarity=-0.037 Sum_probs=116.1
Q ss_pred eEEEEEcCCCCeEEEEe---CCeEEEEecCCCCCcceee-eeecCCCCEEEEEECCCC-CEEEEEeCCCcEEEEecCCcc
Q 003087 13 QVSLFISPRGERVAVAA---VNQVTILQKDDDYQEPCGI-FNCTGLGASIYGAWSESH-DVLGIVDDTHTVYFFKANGEE 87 (849)
Q Consensus 13 v~slafSPdG~~LAsas---~~~i~iw~~~~~~~~~~~~-~~~~~~~~v~~vafSPDG-~~LAs~~~dgtIrlWd~~g~~ 87 (849)
...++|||||++|.+++ +++|.++| .+. +.... .... .++.+.|+| +.+++.+.||++.+||.+|+.
T Consensus 127 p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~--~~~~~~i~~~-----~~~~~~~~~~~~~~~~~~dg~~~~vd~~g~~ 198 (373)
T 2mad_H 127 SWMNANTPNNADLLFFQFAAGPAVGLVV-QGG--SSDDQLLSSP-----TCYHIHPGAPSTFYLLCAQGGLAKTDHAGGA 198 (373)
T ss_pred ccceEECCCCCEEEEEecCCCCeEEEEE-CCC--CEEeEEcCCC-----ceEEEEeCCCceEEEEcCCCCEEEEECCCcE
Confidence 45789999999999885 36788888 643 34433 3211 125566766 445567788888888885544
Q ss_pred ceeccccc--ccccccE-EEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCccccccccc--CCcceeccccCCc
Q 003087 88 ITRFTNKH--LKVSLPI-IGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASAS--SSGLTLRRQFPQN 162 (849)
Q Consensus 88 ~~~l~~~~--~~~~~~V-~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~ 162 (849)
........ .+ ..++ ....|.+++ ..++..+..|.+.+.|+..+... ... .+. .......+..+.+
T Consensus 199 ~~~~~~~~~~~~-~~p~~~~~~~~~~~-------~~~~~~~~~~~v~vid~~~~~~~-v~~-~~~~~~~~~~~~~~~p~g 268 (373)
T 2mad_H 199 AGAGLVGAMLTA-AQNLLTQPAQANKS-------GRIVWPVYSGKILQADISAAGAT-NKA-PIDALSGGRKADTWRPGG 268 (373)
T ss_pred EEEEeccccccC-CcceeecceeEecC-------CEEEEEcCCceEEEEeccCCcce-Eee-eeeecCCcccccceecCc
Confidence 32211000 00 0111 122333321 12333356788888887643221 100 000 0000001112334
Q ss_pred eEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCC
Q 003087 163 VICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGK 242 (849)
Q Consensus 163 V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~ 242 (849)
...++|+|||+.+.++...+. -+. .+.+...|.+.|..+.. .+. .+. -| ...+.++|||||+
T Consensus 269 ~~~~~~s~d~~~lyV~~~~~~--~~~-~~~~~~~V~VID~~t~~---vv~------~i~--~g----~~p~~i~~s~Dg~ 330 (373)
T 2mad_H 269 WQQVAYLKSSDGIYLLTSEQS--AWK-LHAAAKEVTSVTGLVGQ---TSS------QIS--LG----HDVDAISVAQDGG 330 (373)
T ss_pred eEeEEECCCCCEEEEEeccCC--ccc-ccCCCCeEEEEECCCCE---EEE------EEE--CC----CCcCeEEECCCCC
Confidence 566899999998887654320 000 00011136666665431 111 110 11 2467999999999
Q ss_pred -EEEEEe-CCCcEEEEecCCCcc
Q 003087 243 -FVATSD-TNGCLYIFEMDKDNF 263 (849)
Q Consensus 243 -~LAs~s-~Dgtv~LWd~~~~~~ 263 (849)
+|+++. .+++|.++|+.+.+.
T Consensus 331 ~~l~v~~~~~~~V~ViD~~t~~v 353 (373)
T 2mad_H 331 PDLYALSAGTEVLHIYDAGAGDQ 353 (373)
T ss_pred eEEEEEcCCCCeEEEEECCCCCE
Confidence 788887 599999999998754
No 220
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.41 E-value=1.1e-05 Score=87.47 Aligned_cols=188 Identities=7% Similarity=-0.008 Sum_probs=108.7
Q ss_pred cceEEEEEcCCCCeEEEEeCCeEEEEecCCCCCcceeeee-e-cC--CCCEEEEEECCCCCEEEEEeC------CCcEEE
Q 003087 11 KKQVSLFISPRGERVAVAAVNQVTILQKDDDYQEPCGIFN-C-TG--LGASIYGAWSESHDVLGIVDD------THTVYF 80 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas~~~i~iw~~~~~~~~~~~~~~-~-~~--~~~v~~vafSPDG~~LAs~~~------dgtIrl 80 (849)
..+.+++|+|||+++++. .+.|.+|+..++. . ..+. . .+ ...+..++|+|||++.++... .+.|..
T Consensus 90 ~~v~~i~~~~dg~l~v~~-~~gl~~~d~~~g~--~-~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~ 165 (326)
T 2ghs_A 90 FMGSALAKISDSKQLIAS-DDGLFLRDTATGV--L-TLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYH 165 (326)
T ss_dssp SCEEEEEEEETTEEEEEE-TTEEEEEETTTCC--E-EEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEE
T ss_pred CcceEEEEeCCCeEEEEE-CCCEEEEECCCCc--E-EEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEE
Confidence 468899999999988765 5568888865432 1 1121 1 11 234789999999998876543 245555
Q ss_pred EecCCccceecccccccccccEEEEEecCCcccccccceeEEEE-eCCCcEEEEEec--CC-CCcccccccccCCcceec
Q 003087 81 FKANGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVF-TSDGFLHQIEIS--QD-PSASISSASASSSGLTLR 156 (849)
Q Consensus 81 Wd~~g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~-s~Dg~v~lw~~~--~~-~~~~~~~~~~~~~~~~l~ 156 (849)
++ +|+. ..+... .....+++|+|++.. +++. +.++.|.+|++. ++ ..... . . ...+.
T Consensus 166 ~~-~g~~-~~~~~~----~~~~~~i~~s~dg~~-------lyv~~~~~~~I~~~d~~~~~Gl~~~~~-~-~----~~~~~ 226 (326)
T 2ghs_A 166 VA-KGKV-TKLFAD----ISIPNSICFSPDGTT-------GYFVDTKVNRLMRVPLDARTGLPTGKA-E-V----FIDST 226 (326)
T ss_dssp EE-TTEE-EEEEEE----ESSEEEEEECTTSCE-------EEEEETTTCEEEEEEBCTTTCCBSSCC-E-E----EEECT
T ss_pred Ee-CCcE-EEeeCC----CcccCCeEEcCCCCE-------EEEEECCCCEEEEEEcccccCCcccCc-e-E----EEECC
Confidence 55 4543 332211 123568899886542 2222 457889999985 44 22110 0 0 00111
Q ss_pred cccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEE
Q 003087 157 RQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVL 236 (849)
Q Consensus 157 ~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~va 236 (849)
.......+++++++|++.++....+ .|..|+..+. .+.. +.. +...+.+++
T Consensus 227 -~~~~~p~gi~~d~~G~lwva~~~~~-------------~v~~~d~~g~----~~~~------i~~-----~~~~~~~~a 277 (326)
T 2ghs_A 227 -GIKGGMDGSVCDAEGHIWNARWGEG-------------AVDRYDTDGN----HIAR------YEV-----PGKQTTCPA 277 (326)
T ss_dssp -TSSSEEEEEEECTTSCEEEEEETTT-------------EEEEECTTCC----EEEE------EEC-----SCSBEEEEE
T ss_pred -CCCCCCCeeEECCCCCEEEEEeCCC-------------EEEEECCCCC----EEEE------EEC-----CCCCcEEEE
Confidence 1123468899999999876543333 3777766332 1111 111 234688999
Q ss_pred Ec-cCCCEEEEEeCC
Q 003087 237 IS-PQGKFVATSDTN 250 (849)
Q Consensus 237 fS-PDG~~LAs~s~D 250 (849)
|+ |||+.|..++..
T Consensus 278 f~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 278 FIGPDASRLLVTSAR 292 (326)
T ss_dssp EESTTSCEEEEEEBC
T ss_pred EecCCCCEEEEEecC
Confidence 98 999877655443
No 221
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.36 E-value=1.7e-05 Score=88.26 Aligned_cols=217 Identities=12% Similarity=0.109 Sum_probs=112.9
Q ss_pred ceEEEEEcCCCCeEEEEe---CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecC--Cc
Q 003087 12 KQVSLFISPRGERVAVAA---VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKAN--GE 86 (849)
Q Consensus 12 ~v~slafSPdG~~LAsas---~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~--g~ 86 (849)
....++|||||++|.++. +++|.++|.... +.+.++...+ ....+.+..+.+++.+.||++-+.++. |+
T Consensus 138 ~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~--~vv~tI~v~g----~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~ 211 (386)
T 3sjl_D 138 YPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGK--AFKRMLDVPD----CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGT 211 (386)
T ss_dssp CGGGEEECTTSSEEEEEECSSSCEEEEEETTTT--EEEEEEECCS----EEEEEEEETTEEEEEETTSCEEEEECCSSSC
T ss_pred CCceEEEcCCCCEEEEEEcCCCCeEEEEECCCC--cEEEEEECCC----cceeecCCCceeEEECCCCCEEEEECCCCCe
Confidence 355689999999887774 478999997643 3444443111 123343344455555556665555553 22
Q ss_pred cceeccccccccc-ccEE-EEEec-CCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcce-------ec
Q 003087 87 EITRFTNKHLKVS-LPII-GLIAQ-DETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLT-------LR 156 (849)
Q Consensus 87 ~~~~l~~~~~~~~-~~V~-~l~fs-~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~-------l~ 156 (849)
...... +..... .++. ...|. +++ +++..+++|+|.+.|...+... ... .++ -.
T Consensus 212 v~~~~~-~~~~~~~~~~~~~~~~~~~dG--------~~~~vs~~g~V~v~d~~~~~~~-v~~------~~~~~~~~~~~~ 275 (386)
T 3sjl_D 212 PEITHT-EVFHPEDEFLINHPAYSQKAG--------RLVWPTYTGKIHQIDLSSGDAK-FLP------AVEALTEAERAD 275 (386)
T ss_dssp CEEEEC-CCCSCTTSCBCSCCEEETTTT--------EEEEEBTTSEEEEEECTTSSCE-ECC------CEESSCHHHHHT
T ss_pred EEEeec-ceeccccccccccceeEcCCC--------cEEEEeCCCEEEEEECCCCcce-eec------ceeccccccccc
Confidence 211110 110000 1111 12331 222 3434578899999998755421 111 011 01
Q ss_pred cccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEE
Q 003087 157 RQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVL 236 (849)
Q Consensus 157 ~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~va 236 (849)
|-.+.++..++++|+++.|.++-.++ ..++....+ ..|.+-|+.+.. .+.. +. -...+++|+
T Consensus 276 g~~p~g~q~~a~~~~~~~lyV~~~~~--~~~~hk~~~-~~V~viD~~t~k---v~~~------i~------vg~~~~~la 337 (386)
T 3sjl_D 276 GWRPGGWQQVAYHRALDRIYLLVDQR--DEWRHKTAS-RFVVVLDAKTGE---RLAK------FE------MGHEIDSIN 337 (386)
T ss_dssp TEEECSSSCEEEETTTTEEEEEEEEC--CTTCTTSCE-EEEEEEETTTCC---EEEE------EE------EEEEECEEE
T ss_pred cccCCCcceeeECCCCCeEEEEeccc--cccccCCCC-CEEEEEECCCCe---EEEE------EE------CCCCcceEE
Confidence 11233456688899999998875422 001111111 124344433321 1111 10 013678999
Q ss_pred EccCCC-EEEEE-eCCCcEEEEecCCCcccccccc
Q 003087 237 ISPQGK-FVATS-DTNGCLYIFEMDKDNFSLSKFA 269 (849)
Q Consensus 237 fSPDG~-~LAs~-s~Dgtv~LWd~~~~~~~l~~~~ 269 (849)
|||||+ +|.++ ..+|+|.++|..+++. +++++
T Consensus 338 vs~D~~~~ly~tn~~~~~VsViD~~t~k~-~~~i~ 371 (386)
T 3sjl_D 338 VSQDEKPLLYALSTGDKTLYIHDAESGEE-LRSVN 371 (386)
T ss_dssp ECSSSSCEEEEEETTTTEEEEEETTTCCE-EEEEC
T ss_pred ECCCCCeEEEEEcCCCCeEEEEECCCCcE-EEEec
Confidence 999997 66665 4599999999998764 45544
No 222
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.32 E-value=7e-05 Score=84.32 Aligned_cols=216 Identities=12% Similarity=0.032 Sum_probs=117.8
Q ss_pred c--CCCCeEEEEe--CCeEEEEecCCCCCcceeeeee-------c-CCCCEEEEEECCCCCEEEEEeCC------CcEEE
Q 003087 19 S--PRGERVAVAA--VNQVTILQKDDDYQEPCGIFNC-------T-GLGASIYGAWSESHDVLGIVDDT------HTVYF 80 (849)
Q Consensus 19 S--PdG~~LAsas--~~~i~iw~~~~~~~~~~~~~~~-------~-~~~~v~~vafSPDG~~LAs~~~d------gtIrl 80 (849)
| +|+++|.+.+ +++|.+.|...+..+|.-.-+. + +...-..+..+||| +.+++..+ |.|-+
T Consensus 90 ~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~v 168 (462)
T 2ece_A 90 KPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILM 168 (462)
T ss_dssp CTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEE
T ss_pred CCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEE
Confidence 8 9999998876 5789999976443333221111 0 11123578999999 77777666 78999
Q ss_pred EecC-CccceecccccccccccEEEEEecCCcccccccc----ee----EEE----EeCCCcEEEEEecCCCCccccccc
Q 003087 81 FKAN-GEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCL----CS----FTV----FTSDGFLHQIEISQDPSASISSAS 147 (849)
Q Consensus 81 Wd~~-g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~----~~----~~~----~s~Dg~v~lw~~~~~~~~~~~~~~ 147 (849)
.|.. ++.+.++.......... ..+.|+|++...-+.+ .. +.. ..+..+|.+||+.+++....+.
T Consensus 169 lD~~T~~v~~~~~~~~~~~~~~-Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~-- 245 (462)
T 2ece_A 169 LDHYSFEPLGKWEIDRGDQYLA-YDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLT-- 245 (462)
T ss_dssp ECTTTCCEEEECCSBCTTCCCC-CCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEE--
T ss_pred EECCCCeEEEEEccCCCCcccc-ceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEe--
Confidence 9987 56666664321110011 1345566543211100 00 000 0247899999998754332221
Q ss_pred ccCCcceeccccCCceEEEEE--cCCCceEEEEec-----CCCCccccCCCCCCceeeEEEecCCcCccc--ceecc---
Q 003087 148 ASSSGLTLRRQFPQNVICTDY--HPELSLLSVVSN-----TDTSSLTSSGNSGPCCISLWRRCHNLELEQ--LYTTQ--- 215 (849)
Q Consensus 148 ~~~~~~~l~~~~~~~V~svaf--sPdg~lLas~g~-----d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~--l~~~~--- 215 (849)
+. ........++| ||+|+.+.++.. .. ..|.+|..+++. ++. +.+..
T Consensus 246 -------vg-~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Ls------------s~V~v~~~d~g~-~~~~~vIdi~~~~ 304 (462)
T 2ece_A 246 -------LG-EENRMALELRPLHDPTKLMGFINMVVSLKDLS------------SSIWLWFYEDGK-WNAEKVIEIPAEP 304 (462)
T ss_dssp -------SC-TTEEEEEEEEECSSTTCCEEEEEEEEETTTCC------------EEEEEEEEETTE-EEEEEEEEECCEE
T ss_pred -------cC-CCCCccceeEeeECCCCCEEEEEEeeeccCCC------------ceEEEEEecCCc-eeEEEEEeCCCcc
Confidence 11 00112345555 999999988765 32 136666665421 111 11000
Q ss_pred ccceee-ccCCCc-cccccceEEEccCCCEEEEEeC-CCcEEEEecC
Q 003087 216 IEGLYC-EPKGHE-VQLAHPKVLISPQGKFVATSDT-NGCLYIFEMD 259 (849)
Q Consensus 216 ~~~~~~-~~~g~~-h~~~V~~vafSPDG~~LAs~s~-Dgtv~LWd~~ 259 (849)
..+.+. .+.+.. .......|.+||||++|.++.. .++|.++|+.
T Consensus 305 v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~ 351 (462)
T 2ece_A 305 LEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDIS 351 (462)
T ss_dssp CCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECS
T ss_pred ccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEec
Confidence 011110 000000 0135678999999999988775 7899999986
No 223
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.26 E-value=5.5e-05 Score=85.17 Aligned_cols=213 Identities=14% Similarity=0.108 Sum_probs=113.7
Q ss_pred eEEEEEcCCCCeEEEE-eC------CeEEEEecCCCCCcceeeeeec-CCCCE-EEEEECCCCCEEEEEe----------
Q 003087 13 QVSLFISPRGERVAVA-AV------NQVTILQKDDDYQEPCGIFNCT-GLGAS-IYGAWSESHDVLGIVD---------- 73 (849)
Q Consensus 13 v~slafSPdG~~LAsa-s~------~~i~iw~~~~~~~~~~~~~~~~-~~~~v-~~vafSPDG~~LAs~~---------- 73 (849)
...+..+||| ..+++ ++ +.|.+.|..+ ...++++... +...+ -.+.|+||++++.+++
T Consensus 140 Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T--~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g 216 (462)
T 2ece_A 140 LHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYS--FEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDG 216 (462)
T ss_dssp EEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTT--CCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTC
T ss_pred ccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCC--CeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccc
Confidence 3456899999 55554 33 5788888654 3455666522 22223 3588999999999885
Q ss_pred ---------CCCcEEEEecC-CccceecccccccccccEEEEEe--cCCcccccccceeEEEEe-----CCCcEEEEEec
Q 003087 74 ---------DTHTVYFFKAN-GEEITRFTNKHLKVSLPIIGLIA--QDETDVQRSCLCSFTVFT-----SDGFLHQIEIS 136 (849)
Q Consensus 74 ---------~dgtIrlWd~~-g~~~~~l~~~~~~~~~~V~~l~f--s~~~~~~~s~~~~~~~~s-----~Dg~v~lw~~~ 136 (849)
.+++|.+||+. ++.+.++.-... ...-..|.| +|++... +.+.- .+++|.+|...
T Consensus 217 ~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~--g~~P~~i~f~~~Pdg~~a------YV~~e~~~~~Lss~V~v~~~d 288 (462)
T 2ece_A 217 LKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEE--NRMALELRPLHDPTKLMG------FINMVVSLKDLSSSIWLWFYE 288 (462)
T ss_dssp CCTTTHHHHSCCEEEEEETTTTEEEEEEESCTT--EEEEEEEEECSSTTCCEE------EEEEEEETTTCCEEEEEEEEE
T ss_pred cchhhhhhccCCEEEEEECCCCcEeeEEecCCC--CCccceeEeeECCCCCEE------EEEEeeeccCCCceEEEEEec
Confidence 47899999997 444444433210 012234545 7765421 22223 55677666554
Q ss_pred CCCCcccccccccCC--ccee---cc---ccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCc
Q 003087 137 QDPSASISSASASSS--GLTL---RR---QFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLEL 208 (849)
Q Consensus 137 ~~~~~~~~~~~~~~~--~~~l---~~---~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~ 208 (849)
.+.......-++... ..++ .. ........+.+||||++|.++-... + .|.++++.....+
T Consensus 289 ~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~----------d--~VavfdV~d~~~~ 356 (462)
T 2ece_A 289 DGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGI----------G--EVRQYDISNPFKP 356 (462)
T ss_dssp TTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTT----------T--EEEEEECSSTTSC
T ss_pred CCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCC----------C--EEEEEEecCCCCc
Confidence 322110000000000 0000 00 0013478899999999998765432 2 4889998643222
Q ss_pred ccceeccccceeecc---CCCccccccceEEEccCCCEEEEEe
Q 003087 209 EQLYTTQIEGLYCEP---KGHEVQLAHPKVLISPQGKFVATSD 248 (849)
Q Consensus 209 ~~l~~~~~~~~~~~~---~g~~h~~~V~~vafSPDG~~LAs~s 248 (849)
..+.....+|.++.. +|..-..+-..+++||||++|.++.
T Consensus 357 ~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 357 VLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp EEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred EEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 222222222221100 1100011346899999999999887
No 224
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.23 E-value=2.4e-05 Score=85.43 Aligned_cols=206 Identities=8% Similarity=-0.029 Sum_probs=114.2
Q ss_pred cccceEEEEEcCCCCeEEEEe------CCeEEEEecCCCCCcceeeeeec-C----CCCEEEEEECCCCC-EEEEEe---
Q 003087 9 KTKKQVSLFISPRGERVAVAA------VNQVTILQKDDDYQEPCGIFNCT-G----LGASIYGAWSESHD-VLGIVD--- 73 (849)
Q Consensus 9 ~~~~v~slafSPdG~~LAsas------~~~i~iw~~~~~~~~~~~~~~~~-~----~~~v~~vafSPDG~-~LAs~~--- 73 (849)
+...+..|+|+|+|++.++-+ ++.|.+|+..++ +....+... . ......++++|++. ..++..
T Consensus 65 ~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg--~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~ 142 (343)
T 2qe8_A 65 TFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNN--QLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPD 142 (343)
T ss_dssp CCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTT--EEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSG
T ss_pred ceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCC--eEEEEEECChhhcccccccceEEEecCCCEEEEEcCccC
Confidence 457899999999999877654 368889987542 333333321 1 23457999998754 445555
Q ss_pred CCCcEEEEecC-Cccceecccccc------c-------------------ccccEEEEEecCCcccccccceeEEEEeCC
Q 003087 74 DTHTVYFFKAN-GEEITRFTNKHL------K-------------------VSLPIIGLIAQDETDVQRSCLCSFTVFTSD 127 (849)
Q Consensus 74 ~dgtIrlWd~~-g~~~~~l~~~~~------~-------------------~~~~V~~l~fs~~~~~~~s~~~~~~~~s~D 127 (849)
.+++|.+||.. |+....+..+.. . ....+.+|+|+|++.. +++...+
T Consensus 143 ~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~-------ly~~~~~ 215 (343)
T 2qe8_A 143 DKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEW-------LYLSPMH 215 (343)
T ss_dssp GGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCE-------EEEEESS
T ss_pred CCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCE-------EEEEeCC
Confidence 67899999987 543332322100 0 0012467888775532 4444444
Q ss_pred CcEEEEEecCCCCc--ccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEe-cC
Q 003087 128 GFLHQIEISQDPSA--SISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRR-CH 204 (849)
Q Consensus 128 g~v~lw~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~-~~ 204 (849)
+. ++|.+.+.... ..-.... ...+...++ ......++++|+|++.++....+ .|..|+. .+
T Consensus 216 ~~-~l~~~~~~~~~~~~~~~~~~-~~~~~~~g~-~g~pdgia~d~~G~l~va~~~~~-------------~V~~~d~~~G 279 (343)
T 2qe8_A 216 ST-SMYRIKSADLSNLQLTDAEL-GSKIERYSE-KPICDGISIDKDHNIYVGDLAHS-------------AIGVITSADR 279 (343)
T ss_dssp CS-EEEEEEHHHHTCTTCCHHHH-HTTCEEEEE-CCSCSCEEECTTCCEEEEEGGGT-------------EEEEEETTTT
T ss_pred CC-eEEEEEHHHhcCCCCChhhh-hcceEeccc-CCCCceEEECCCCCEEEEccCCC-------------eEEEEECCCC
Confidence 43 55655431100 0000000 000111112 12357789999999887654443 3888987 43
Q ss_pred CcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEEeCCCcE
Q 003087 205 NLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCL 253 (849)
Q Consensus 205 ~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv 253 (849)
. +..+... + +.....+|+|+|||+++++.+..+.+
T Consensus 280 ~--~~~~~~~--------~----~~~~p~~va~~~~g~l~v~~~~~~~~ 314 (343)
T 2qe8_A 280 A--YKLLVTD--------E----KLSWTDSFNFGSDGYLYFDCNQLHHS 314 (343)
T ss_dssp E--EEEEEEC--------G----GGSCEEEEEECTTSCEEEEECCGGGS
T ss_pred C--EEEEEEC--------C----ceecCCeeEECCCCcEEEEeCccccc
Confidence 2 1111110 0 12356789999999998887655444
No 225
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.11 E-value=2e-06 Score=95.30 Aligned_cols=181 Identities=9% Similarity=0.052 Sum_probs=91.8
Q ss_pred CCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEec-CCccceecccccccc
Q 003087 21 RGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKA-NGEEITRFTNKHLKV 98 (849)
Q Consensus 21 dG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~-~g~~~~~l~~~~~~~ 98 (849)
+|.+|++++ ++.|..||..++ +..-++. . +.+.+..+.++|+++++++.||+|+.||. +|+.+..+..+....
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG--~~~W~~~--~-~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~ 82 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTG--SIKWTLK--E-DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPEL 82 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTC--CEEEEEE--C-CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHH
T ss_pred eCCEEEEEcCCCEEEEEECCCC--CEEEEec--C-CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccc
Confidence 577888887 689999997653 3332222 2 34555667789999999999999999999 477665553221110
Q ss_pred --cccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEcCCCceEE
Q 003087 99 --SLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLS 176 (849)
Q Consensus 99 --~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLa 176 (849)
+.++ +.. ++.+++++.||.|..||..+|+....+. .+ ..+.++|++..++
T Consensus 83 ~~~sp~----~~~--------~~~v~~g~~dg~v~a~D~~tG~~~w~~~-----------~~-----~~~~~~p~~~~v~ 134 (369)
T 2hz6_A 83 VQASPC----RSS--------DGILYMGKKQDIWYVIDLLTGEKQQTLS-----------SA-----FADSLSPSTSLLY 134 (369)
T ss_dssp HTTCSC----C-------------CCCCEEEEEEEEECCC--------------------------------------EE
T ss_pred cccCce----Eec--------CCEEEEEeCCCEEEEEECCCCcEEEEec-----------CC-----CcccccccCCEEE
Confidence 0111 001 1234555789999999999887643321 11 1245678888898
Q ss_pred EEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCC---CEEEEEeCCCcE
Q 003087 177 VVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQG---KFVATSDTNGCL 253 (849)
Q Consensus 177 s~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG---~~LAs~s~Dgtv 253 (849)
+++.++ .|..||..++. .++..+. ......++++++ ..+++++.||.|
T Consensus 135 ~~~~dg-------------~v~a~d~~tG~---~~W~~~~-------------~~~~~~~~~~~~~~~~~v~~~~~dg~v 185 (369)
T 2hz6_A 135 LGRTEY-------------TITMYDTKTRE---LRWNATY-------------FDYAASLPEDDVDYKMSHFVSNGDGLV 185 (369)
T ss_dssp EEEEEE-------------EEECCCSSSSS---CCCEEEE-------------EEECCBCCCCCTTCCCCEEEEETSCEE
T ss_pred EEecCC-------------EEEEEECCCCC---EEEeEec-------------ccccCccccCCccccceEEEECCCCEE
Confidence 888775 26777776542 2222110 011234445543 456678899999
Q ss_pred EEEecCCCcc
Q 003087 254 YIFEMDKDNF 263 (849)
Q Consensus 254 ~LWd~~~~~~ 263 (849)
..||..+++.
T Consensus 186 ~a~d~~tG~~ 195 (369)
T 2hz6_A 186 VTVDSESGDV 195 (369)
T ss_dssp EEECTTTCCE
T ss_pred EEEECCCCcE
Confidence 9999988754
No 226
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.09 E-value=3.6e-05 Score=86.94 Aligned_cols=212 Identities=8% Similarity=0.068 Sum_probs=110.8
Q ss_pred eEEEEEcCCCCeEEEEe---CCeEEEEecCCCCCcceeeeeecCC------CCEEEEEECCCCCEEEEEeCCCcEEEEec
Q 003087 13 QVSLFISPRGERVAVAA---VNQVTILQKDDDYQEPCGIFNCTGL------GASIYGAWSESHDVLGIVDDTHTVYFFKA 83 (849)
Q Consensus 13 v~slafSPdG~~LAsas---~~~i~iw~~~~~~~~~~~~~~~~~~------~~v~~vafSPDG~~LAs~~~dgtIrlWd~ 83 (849)
...++|||||++|.++. +++|.+.|.... +....+...+. +...-+++++||+++.....++++.. ..
T Consensus 179 P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~--kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~-~~ 255 (426)
T 3c75_H 179 QWMNALTPDNKNLLFYQFSPAPAVGVVDLEGK--TFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKV-TN 255 (426)
T ss_dssp GGGSEECTTSSEEEEEECSSSCEEEEEETTTT--EEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEE-EE
T ss_pred cceEEEcCCCCEEEEEecCCCCeEEEEECCCC--eEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEE-Ee
Confidence 45789999999998875 368988887642 33333331110 01122566666666655555554431 00
Q ss_pred CCccceecccccccccccE-EEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCccee-------
Q 003087 84 NGEEITRFTNKHLKVSLPI-IGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTL------- 155 (849)
Q Consensus 84 ~g~~~~~l~~~~~~~~~~V-~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l------- 155 (849)
. ....... .++ ..+.|.+++. +++..+..|.|.+.|...+... ... .+++
T Consensus 256 ~--~~~~v~~------~p~~~~~~~~~dg~-------~~~~~s~~g~V~ViD~~~~~~~-v~~------~~~~~~~~~i~ 313 (426)
T 3c75_H 256 T--EVFHTED------ELLINHPAFSLRSG-------RLVWPTYTGKIFQADLTAEGAT-FRA------PIEALTEAERA 313 (426)
T ss_dssp C--CCCSCTT------SCBCSCCEECTTTC-------EEEEEBTTSEEEEEEECSSCEE-ECC------CEESSCTTTGG
T ss_pred e--eeeccCC------CceeeEeeecCCCC-------EEEEEeCCCcEEEEeccCCceE-Eee------eeeeccccccc
Confidence 0 0000000 011 1233444322 2344467788888888643321 100 0010
Q ss_pred ccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceE
Q 003087 156 RRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKV 235 (849)
Q Consensus 156 ~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~v 235 (849)
.+..+.+...++|+|||+.+.++-..+. .++ .+.+...|.+.|..+.. .+..... | ...+.|
T Consensus 314 ~g~~p~g~~~va~s~dg~rlyVa~~~~~--~gt-hk~~s~~VsVID~~T~k---vv~~I~v--------g----~~P~gi 375 (426)
T 3c75_H 314 DDWRPGGWQQTAYHRQSDRIYLLVDQRD--EWK-HKAASRFVVVLNAETGE---RINKIEL--------G----HEIDSI 375 (426)
T ss_dssp GTEEECSSSCEEEEGGGTEEEEEEEECC--TTC-TTSCEEEEEEEETTTCC---EEEEEEE--------E----EEECEE
T ss_pred cccccCCceeeEEcCCCCEEEEEecccc--ccc-ccCCCCEEEEEECCCCe---EEEEEEC--------C----CCcCeE
Confidence 0111223445799999998877643210 000 00011236777765532 1111110 1 145689
Q ss_pred EEccCCC-EEEEEe-CCCcEEEEecCCCccccccc
Q 003087 236 LISPQGK-FVATSD-TNGCLYIFEMDKDNFSLSKF 268 (849)
Q Consensus 236 afSPDG~-~LAs~s-~Dgtv~LWd~~~~~~~l~~~ 268 (849)
+|+|||+ +|+++. .+++|.++|+.+.+. ++.+
T Consensus 376 a~spDg~~~lyv~n~~s~~VsVID~~t~kv-v~tI 409 (426)
T 3c75_H 376 NVSQDAEPLLYALSAGTQTLHIYDAATGEE-LRSV 409 (426)
T ss_dssp EECCSSSCEEEEEETTTTEEEEEETTTCCE-EEEE
T ss_pred EEccCCCEEEEEEcCCCCeEEEEECCCCCE-EEEe
Confidence 9999999 999988 599999999998864 4443
No 227
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=97.96 E-value=1.6e-06 Score=96.21 Aligned_cols=183 Identities=10% Similarity=0.061 Sum_probs=91.4
Q ss_pred CCCEEEEEeCCCcEEEEecC-CccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCccc
Q 003087 65 SHDVLGIVDDTHTVYFFKAN-GEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASI 143 (849)
Q Consensus 65 DG~~LAs~~~dgtIrlWd~~-g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~ 143 (849)
+|.++++++.||+|+.||.. |+.+.+.... .+.+..+.+++ ..+++.+.||.|..||..+|+....
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~~------~~~s~p~~~~g-------~~~v~~s~dg~l~a~d~~tG~~~w~ 74 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKED------PVLQVPTHVEE-------PAFLPDPNDGSLYTLGSKNNEGLTK 74 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEECC------CSCCCC------------CCEEECTTTCCEEEC-----CCSEE
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecCC------CceecceEcCC-------CEEEEeCCCCEEEEEECCCCceeee
Confidence 68899999999999999974 8776665431 11111111111 1233447899999999987765432
Q ss_pred ccccccCCcceeccccCCce-EEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeec
Q 003087 144 SSASASSSGLTLRRQFPQNV-ICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCE 222 (849)
Q Consensus 144 ~~~~~~~~~~~l~~~~~~~V-~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~ 222 (849)
.. + +.+..+ .+..++.++ .+++++.++ .|..||..++. .++...
T Consensus 75 ~~---------~--~~~~~~~~sp~~~~~~-~v~~g~~dg-------------~v~a~D~~tG~---~~w~~~------- 119 (369)
T 2hz6_A 75 LP---------F--TIPELVQASPCRSSDG-ILYMGKKQD-------------IWYVIDLLTGE---KQQTLS------- 119 (369)
T ss_dssp CS---------C--CHHHHHTTCSCC------CCCCEEEE-------------EEEEECCC-------------------
T ss_pred ee---------c--cCccccccCceEecCC-EEEEEeCCC-------------EEEEEECCCCc---EEEEec-------
Confidence 21 0 100011 111122344 455555554 37788876542 222111
Q ss_pred cCCCccccccceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEec--
Q 003087 223 PKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWS-- 300 (849)
Q Consensus 223 ~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~-- 300 (849)
. +. .+.++|+|..|++++.||.|+.||..+++. ++.+.... . ...++..
T Consensus 120 --~--~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~-~W~~~~~~---~-----------------~~~~~~~~~ 170 (369)
T 2hz6_A 120 --S--AF----ADSLSPSTSLLYLGRTEYTITMYDTKTREL-RWNATYFD---Y-----------------AASLPEDDV 170 (369)
T ss_dssp ---------------------EEEEEEEEEEECCCSSSSSC-CCEEEEEE---E-----------------CCBCCCCCT
T ss_pred --C--CC----cccccccCCEEEEEecCCEEEEEECCCCCE-EEeEeccc---c-----------------cCccccCCc
Confidence 0 11 256788999999999999999999998754 34433111 0 0011112
Q ss_pred --CCEEEEEEeCCcEEEEEecCCccc
Q 003087 301 --DNILILARKSSIITMIDVLSGLKV 324 (849)
Q Consensus 301 --D~~la~a~~dgti~lwdl~~~~~l 324 (849)
++.+.+++.+|.|..||..+|+.+
T Consensus 171 ~~~~~v~~~~~dg~v~a~d~~tG~~~ 196 (369)
T 2hz6_A 171 DYKMSHFVSNGDGLVVTVDSESGDVL 196 (369)
T ss_dssp TCCCCEEEEETSCEEEEECTTTCCEE
T ss_pred cccceEEEECCCCEEEEEECCCCcEE
Confidence 366778889999999999988754
No 228
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.94 E-value=0.0012 Score=70.90 Aligned_cols=249 Identities=8% Similarity=-0.016 Sum_probs=133.0
Q ss_pred cccccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeec----------C---------CCCEEEEEECC-C
Q 003087 7 PRKTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCT----------G---------LGASIYGAWSE-S 65 (849)
Q Consensus 7 ~~~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~----------~---------~~~v~~vafSP-D 65 (849)
|........++++|+|+++-++. ++.|..|+..+.. ...+... + ......+++.| +
T Consensus 15 ~g~~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~ 91 (322)
T 2fp8_A 15 EAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSG---FVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQN 91 (322)
T ss_dssp ECSSSCCCCEECCTTCSSEEEECTTSEEEEECCTTTC---EEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTT
T ss_pred CCccCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCc---eEEEecccccccccccccccchhccccCCCCceEEEcCCC
Confidence 44456678899999999666664 5788888754321 1112110 0 12467899998 6
Q ss_pred CCEEEEEeCCCcEEEEecCCccceecccccc-cccccEEEEEecC-CcccccccceeEEEEe------------------
Q 003087 66 HDVLGIVDDTHTVYFFKANGEEITRFTNKHL-KVSLPIIGLIAQD-ETDVQRSCLCSFTVFT------------------ 125 (849)
Q Consensus 66 G~~LAs~~~dgtIrlWd~~g~~~~~l~~~~~-~~~~~V~~l~fs~-~~~~~~s~~~~~~~~s------------------ 125 (849)
|++++ ++..+.|..+|..+..+..+..... .......++++.+ ++. +++..
T Consensus 92 g~l~v-~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~--------l~v~d~~~~~~~~~~~~~~~~~~ 162 (322)
T 2fp8_A 92 NQLYI-VDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGI--------VYFTDVSTLYDDRGVQQIMDTSD 162 (322)
T ss_dssp TEEEE-EETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCC--------EEEEESCSSCCTTCHHHHHHHTC
T ss_pred CcEEE-EECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCE--------EEEECCcccccccccceehcccC
Confidence 66555 4444558888987654443322110 0012345677765 542 22211
Q ss_pred CCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCC
Q 003087 126 SDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHN 205 (849)
Q Consensus 126 ~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~ 205 (849)
.+|.|..++..++...... ... ...+.++|+|||+.|.++.... ..|..+++.+.
T Consensus 163 ~~g~v~~~d~~~~~~~~~~------------~~~-~~p~gia~~~dg~~lyv~d~~~------------~~I~~~~~~~~ 217 (322)
T 2fp8_A 163 KTGRLIKYDPSTKETTLLL------------KEL-HVPGGAEVSADSSFVLVAEFLS------------HQIVKYWLEGP 217 (322)
T ss_dssp CCEEEEEEETTTTEEEEEE------------EEE-SCCCEEEECTTSSEEEEEEGGG------------TEEEEEESSST
T ss_pred CCceEEEEeCCCCEEEEec------------cCC-ccCcceEECCCCCEEEEEeCCC------------CeEEEEECCCC
Confidence 2355666665433321110 011 1357799999999776654332 13666666542
Q ss_pred cCcccceeccccceeeccCCCccccccceEEEccCCCEEEEEeC----------CCcEEEEecCCCcccccccccccccc
Q 003087 206 LELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDT----------NGCLYIFEMDKDNFSLSKFACGERFD 275 (849)
Q Consensus 206 ~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~----------Dgtv~LWd~~~~~~~l~~~~~~~~~~ 275 (849)
... .. ..+... .. ...|++.|+|++.++... .+.|..++..+. .+..+..
T Consensus 218 ~~~-~~------~~~~~~-----~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~--~~~~~~~----- 277 (322)
T 2fp8_A 218 KKG-TA------EVLVKI-----PN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGN--ILEVIPL----- 277 (322)
T ss_dssp TTT-CE------EEEEEC-----SS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSC--EEEEEEC-----
T ss_pred cCC-cc------ceEEeC-----CC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCCCC--EEEEEEC-----
Confidence 100 00 001000 01 456899999998777654 466777776543 1223321
Q ss_pred cccccccCCCCCCCCCCcEEEEEecCCEEEEEE-eCCcEEEEEecCCc
Q 003087 276 LQVADSLFDGRTKPISDITDFAWWSDNILILAR-KSSIITMIDVLSGL 322 (849)
Q Consensus 276 ~~~~~~l~~~~~~~~~~v~~vaws~D~~la~a~-~dgti~lwdl~~~~ 322 (849)
++ +.....+..+++ .++.|.+++ .++.|.++++....
T Consensus 278 --------~~-g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~~ 315 (322)
T 2fp8_A 278 --------PP-PFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDKKG 315 (322)
T ss_dssp --------CT-TTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC----
T ss_pred --------CC-CCccccceEEEE-eCCEEEEeecCCCceEEEeccccc
Confidence 00 111234566776 577877665 56789999887544
No 229
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=97.91 E-value=0.00012 Score=85.09 Aligned_cols=210 Identities=10% Similarity=-0.025 Sum_probs=113.4
Q ss_pred EEEEEcC-----CCCeEEEEe--CCeEEEEecCCCCCcceeeeeecCCCCEEEEEE-C-CCCCEEEEEe-----------
Q 003087 14 VSLFISP-----RGERVAVAA--VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAW-S-ESHDVLGIVD----------- 73 (849)
Q Consensus 14 ~slafSP-----dG~~LAsas--~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vaf-S-PDG~~LAs~~----------- 73 (849)
..+++|. ||++|-+.. ++.|.+.|.... +...+...........++| + |||+++.+++
T Consensus 88 hh~~~s~t~g~~DG~~lfVnd~~~~rVavIdl~t~--~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~ 165 (595)
T 1fwx_A 88 HHVHMSFTEGKYDGRFLFMNDKANTRVARVRCDVM--KCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGT 165 (595)
T ss_dssp CCEEEEEETTEEEEEEEEEEETTTTEEEEEETTTT--EEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSS
T ss_pred CccccCCCCCCcCCCEEEEEcCCCCEEEEEECCCc--eEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCc
Confidence 3466676 999997764 357888887642 2233223212345788998 6 9999999884
Q ss_pred -------CCCcEEEEecCC-ccceecccccccccccEEEEEecCCcccccc--cc---------------eeEEEEe---
Q 003087 74 -------DTHTVYFFKANG-EEITRFTNKHLKVSLPIIGLIAQDETDVQRS--CL---------------CSFTVFT--- 125 (849)
Q Consensus 74 -------~dgtIrlWd~~g-~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s--~~---------------~~~~~~s--- 125 (849)
.+++|.++|... +...++.-. ..-..++++|++..... ++ ..+.+..
T Consensus 166 ~l~~~~~~~~~vtvID~~t~~v~~qI~Vg-----g~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~ 240 (595)
T 1fwx_A 166 NMEDVANYVNVFTAVDADKWEVAWQVLVS-----GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAE 240 (595)
T ss_dssp STTCGGGEEEEEEEEETTTTEEEEEEEES-----SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHH
T ss_pred ccccccccCceEEEEECCCCeEEEEEEeC-----CCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccc
Confidence 356888999874 333443211 00123444443321100 00 0000000
Q ss_pred -----C------CCcEEEEEecC--CCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCC
Q 003087 126 -----S------DGFLHQIEISQ--DPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNS 192 (849)
Q Consensus 126 -----~------Dg~v~lw~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~ 192 (849)
. -+.|.+.|..+ +.. +. ..+.. +...-+++|||||+++++++...
T Consensus 241 ~~~~v~~Gk~~~i~~V~VID~~~~~~~~--~~--------~~Ipv--g~~PhGv~~sPDGk~v~V~~~~s---------- 298 (595)
T 1fwx_A 241 IEKAIAAGDYQELNGVKVVDGRKEASSL--FT--------RYIPI--ANNPHGCNMAPDKKHLCVAGKLS---------- 298 (595)
T ss_dssp HHHHHHHTCSEEETTEEEEECSGGGCCS--SE--------EEEEE--ESSCCCEEECTTSSEEEEECTTS----------
T ss_pred eeEeccCCCeeEECcEEEEeCcccCCce--eE--------EEEec--CCCceEEEEcCCCCEEEEeCCCC----------
Confidence 0 03466666654 221 00 01111 12367889999999988765443
Q ss_pred CCceeeEEEecCCcCc--ccceecccccee-eccCCCccccccceEEEccCCCEEEEEeCCCcEEEEecCC
Q 003087 193 GPCCISLWRRCHNLEL--EQLYTTQIEGLY-CEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDK 260 (849)
Q Consensus 193 G~~~I~lW~~~~~~~~--~~l~~~~~~~~~-~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~ 260 (849)
.+|.+.|+...... ..| .... ... ....| .+-+.++|+|||..-.+.-.|++|..|++++
T Consensus 299 --~~VsVid~~~~~~~~~~~l-~~~~-~v~~~v~vG----~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 299 --PTVTVLDVTRFDAVFYENA-DPRS-AVVAEPELG----LGPLHTAFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp --SBEEEEEGGGHHHHHHSCC-CGGG-GEEECCBCC----SCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred --CeEEEEECccccccccccc-Cccc-ceEEEcCCC----CCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence 24888988753100 000 0000 000 00112 3566899999995555667899999999986
No 230
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.81 E-value=0.00043 Score=83.97 Aligned_cols=115 Identities=12% Similarity=0.111 Sum_probs=65.2
Q ss_pred ceEEEEEc-CCCCeEEEEeC--C----eEEEEecCCC-CCcceeeeeecCCCCEEEEEECCCCCEEEEEeCC-----CcE
Q 003087 12 KQVSLFIS-PRGERVAVAAV--N----QVTILQKDDD-YQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDT-----HTV 78 (849)
Q Consensus 12 ~v~slafS-PdG~~LAsas~--~----~i~iw~~~~~-~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~d-----gtI 78 (849)
.+.+.+|| |||++||.+.+ + +|.+++..++ ...+ ..+. .....++|||||+.|+....| ..|
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~-~~~~----~~~~~~~WspDg~~l~y~~~d~~~~~~~v 249 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA-DKVS----GTNGEIVWGPDHTSLFYVTKDETLRENKV 249 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC-CCEE----EECSCCEECSSTTEEEEEEECTTCCEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC-cccc----CceeeEEEecCCCEEEEEEECCCCCCCEE
Confidence 46789999 99999997742 1 4888887653 2101 1111 112468999999999988765 257
Q ss_pred EEEecCCccc--eecccccccccccEEEEEecCCcccccccceeEEEE-eCCCcEEEEEecCC
Q 003087 79 YFFKANGEEI--TRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVF-TSDGFLHQIEISQD 138 (849)
Q Consensus 79 rlWd~~g~~~--~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~-s~Dg~v~lw~~~~~ 138 (849)
+++++.+... ..+..... .....++.++||+.... +... .....|.++++.++
T Consensus 250 ~~~~lgt~~~~~~lv~~~~~--~~~~~~~~~SpDg~~l~-----~~~~~~~~~~l~~~d~~~~ 305 (751)
T 2xe4_A 250 WRHVMGKLQSEDVCLYEEHN--PLFSAFMYKAADTNTLC-----IGSQSPETAEVHLLDLRKG 305 (751)
T ss_dssp EEEETTSCGGGCEEEEECCC--TTCEEEEEECTTSSEEE-----EEEECSSCEEEEEEESSSC
T ss_pred EEEECCCCchhcEEEEecCC--CceEEEEEECCCCCEEE-----EEecCCCCceEEEEECCCC
Confidence 7788764321 11111110 12345778888764321 1111 12334666776654
No 231
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=97.80 E-value=0.0083 Score=63.87 Aligned_cols=206 Identities=10% Similarity=0.065 Sum_probs=105.6
Q ss_pred cceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCC--cEEEEecCCcc
Q 003087 11 KKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTH--TVYFFKANGEE 87 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dg--tIrlWd~~g~~ 87 (849)
.....++|+|||+++++-. ++.|..++..+ .....+.. ......++|+|||+++++....+ .|..++..+..
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g---~~~~~~~~--~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~ 106 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDG---NQQIHATV--EGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGT 106 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTC---CEEEEEEC--SSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSC
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCC---ceEEEEeC--CCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCe
Confidence 4578899999999776664 57888887543 22222221 24568899999999776654433 35555654332
Q ss_pred ceecccccccccccEEEEEecCCcccccccceeEEEEe-CCCcEEEEEecCCCCcccc-cccccCCcceeccccCCceEE
Q 003087 88 ITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFT-SDGFLHQIEISQDPSASIS-SASASSSGLTLRRQFPQNVIC 165 (849)
Q Consensus 88 ~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s-~Dg~v~lw~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~V~s 165 (849)
+..+.... . ...-.++++.+++ .+++.. .+|.|..+|...+...... .... . .....+.. ...+.
T Consensus 107 ~~~~~~~~-~-~~~~~g~~~~~~~--------~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~-~-~~~~~~~~-~~png 173 (306)
T 2p4o_A 107 VETLLTLP-D-AIFLNGITPLSDT--------QYLTADSYRGAIWLIDVVQPSGSIWLEHPML-A-RSNSESVF-PAANG 173 (306)
T ss_dssp EEEEEECT-T-CSCEEEEEESSSS--------EEEEEETTTTEEEEEETTTTEEEEEEECGGG-S-CSSTTCCS-CSEEE
T ss_pred EEEEEeCC-C-ccccCcccccCCC--------cEEEEECCCCeEEEEeCCCCcEeEEEECCcc-c-cccccCCC-CcCCC
Confidence 23221110 0 0112344433322 122222 4666666664432100000 0000 0 00000111 12455
Q ss_pred EEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEE
Q 003087 166 TDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVA 245 (849)
Q Consensus 166 vafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LA 245 (849)
+ +|||+.|.++.... ..|..+++++...+.. . ..+.. ......|+++|||++.+
T Consensus 174 i--s~dg~~lyv~d~~~------------~~I~~~~~~~~g~~~~---~---~~~~~------~~~P~gi~vd~dG~l~v 227 (306)
T 2p4o_A 174 L--KRFGNFLYVSNTEK------------MLLLRIPVDSTDKPGE---P---EIFVE------QTNIDDFAFDVEGNLYG 227 (306)
T ss_dssp E--EEETTEEEEEETTT------------TEEEEEEBCTTSCBCC---C---EEEEE------SCCCSSEEEBTTCCEEE
T ss_pred c--CcCCCEEEEEeCCC------------CEEEEEEeCCCCCCCc---c---EEEec------cCCCCCeEECCCCCEEE
Confidence 6 89998887765443 1366676654110100 0 11100 01334699999999888
Q ss_pred EEeCCCcEEEEecCC
Q 003087 246 TSDTNGCLYIFEMDK 260 (849)
Q Consensus 246 s~s~Dgtv~LWd~~~ 260 (849)
+....+.|..++..+
T Consensus 228 a~~~~~~V~~~~~~G 242 (306)
T 2p4o_A 228 ATHIYNSVVRIAPDR 242 (306)
T ss_dssp ECBTTCCEEEECTTC
T ss_pred EeCCCCeEEEECCCC
Confidence 777789999998764
No 232
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=97.75 E-value=0.0033 Score=65.32 Aligned_cols=235 Identities=9% Similarity=-0.028 Sum_probs=126.5
Q ss_pred CCeEEEEeCCeEEEEecCCCCCcce---eeeeecCCCCEEEEEECCCCCEEEEEe-CCCcEEEEecCCccceeccccccc
Q 003087 22 GERVAVAAVNQVTILQKDDDYQEPC---GIFNCTGLGASIYGAWSESHDVLGIVD-DTHTVYFFKANGEEITRFTNKHLK 97 (849)
Q Consensus 22 G~~LAsas~~~i~iw~~~~~~~~~~---~~~~~~~~~~v~~vafSPDG~~LAs~~-~dgtIrlWd~~g~~~~~l~~~~~~ 97 (849)
|++|..+..+.|..++......... ..+... ......++|+|+++.|-.++ .+++|..++..|.....+.....
T Consensus 1 ~~~l~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~-~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~- 78 (267)
T 1npe_A 1 GTHLLFAQTGKIERLPLERNTMKKTEAKAFLHIP-AKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDL- 78 (267)
T ss_dssp CEEEEEEEEEEEEEEEESSSCBCGGGCEEEEEEE-EEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTC-
T ss_pred CcEEEEEcCCeEEEEEecCcccccccceeeecCC-CCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCC-
Confidence 4556666556777777654321110 011110 12457899999766665544 57899999998865443322111
Q ss_pred ccccEEEEEecCCcccccccceeEEEE-eCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEcCCCceEE
Q 003087 98 VSLPIIGLIAQDETDVQRSCLCSFTVF-TSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLS 176 (849)
Q Consensus 98 ~~~~V~~l~fs~~~~~~~s~~~~~~~~-s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLa 176 (849)
....++++.+++. .++++ ...+.|..++.......... .... ...+.++++|++..|.
T Consensus 79 --~~p~~ia~d~~~~-------~lyv~d~~~~~I~~~~~~g~~~~~~~-----------~~~~-~~P~~i~vd~~~g~ly 137 (267)
T 1npe_A 79 --GSPEGIALDHLGR-------TIFWTDSQLDRIEVAKMDGTQRRVLF-----------DTGL-VNPRGIVTDPVRGNLY 137 (267)
T ss_dssp --CCEEEEEEETTTT-------EEEEEETTTTEEEEEETTSCSCEEEE-----------CSSC-SSEEEEEEETTTTEEE
T ss_pred --CCccEEEEEecCC-------eEEEEECCCCEEEEEEcCCCCEEEEE-----------ECCC-CCccEEEEeeCCCEEE
Confidence 2356788866321 12222 34567777776432211110 1111 2468999999766555
Q ss_pred EEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEEe-CCCcEEE
Q 003087 177 VVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSD-TNGCLYI 255 (849)
Q Consensus 177 s~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s-~Dgtv~L 255 (849)
++.... ..+ .|...++++.. ...+... .......++|+|||+.|..++ ..++|..
T Consensus 138 v~~~~~--------~~~--~I~~~~~dg~~-~~~~~~~-------------~~~~P~gia~d~~~~~lyv~d~~~~~I~~ 193 (267)
T 1npe_A 138 WTDWNR--------DNP--KIETSHMDGTN-RRILAQD-------------NLGLPNGLTFDAFSSQLCWVDAGTHRAEC 193 (267)
T ss_dssp EEECCS--------SSC--EEEEEETTSCC-CEEEECT-------------TCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred EEECCC--------CCc--EEEEEecCCCC-cEEEEEC-------------CCCCCcEEEEcCCCCEEEEEECCCCEEEE
Confidence 554321 001 25555554421 1111110 012345799999987765555 5689999
Q ss_pred EecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCEEEEEE-eCCcEEEEEecCCccc
Q 003087 256 FEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNILILAR-KSSIITMIDVLSGLKV 324 (849)
Q Consensus 256 Wd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~la~a~-~dgti~lwdl~~~~~l 324 (849)
++..+... ..+.. ....+..++.. ++.+.++. .++.|.++|..+++.+
T Consensus 194 ~~~~g~~~--~~~~~------------------~~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~ 242 (267)
T 1npe_A 194 LNPAQPGR--RKVLE------------------GLQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEM 242 (267)
T ss_dssp EETTEEEE--EEEEE------------------CCCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEE
T ss_pred EecCCCce--EEEec------------------CCCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCce
Confidence 99876421 12110 01224566653 56666665 4678999998887643
No 233
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=97.72 E-value=0.0084 Score=62.19 Aligned_cols=196 Identities=8% Similarity=-0.039 Sum_probs=110.5
Q ss_pred ceEEEEEcCCCCeEEEEe--CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEE-EeCCCcEEEEecCCccc
Q 003087 12 KQVSLFISPRGERVAVAA--VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGI-VDDTHTVYFFKANGEEI 88 (849)
Q Consensus 12 ~v~slafSPdG~~LAsas--~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs-~~~dgtIrlWd~~g~~~ 88 (849)
.+..++|+|+++.|-.+. .+.|..++..+.. .......+......++++|++..|-. -..+++|.+++.+|+..
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~---~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~ 113 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE---PTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR 113 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCC---CEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEecCCCC---cEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE
Confidence 467899999888776664 4688888865421 11121122345689999998665554 45578999999988654
Q ss_pred eecccccccccccEEEEEecCC-cccccccceeEEEEeC---CCcEEEEEecCCCCcccccccccCCcceeccccCCceE
Q 003087 89 TRFTNKHLKVSLPIIGLIAQDE-TDVQRSCLCSFTVFTS---DGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVI 164 (849)
Q Consensus 89 ~~l~~~~~~~~~~V~~l~fs~~-~~~~~s~~~~~~~~s~---Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~ 164 (849)
..+.... . ..-.++++.|+ +. +++... .+.|..+++.. .....+. .... ...+
T Consensus 114 ~~~~~~~--~-~~P~~i~vd~~~g~--------lyv~~~~~~~~~I~~~~~dg-~~~~~~~----------~~~~-~~P~ 170 (267)
T 1npe_A 114 RVLFDTG--L-VNPRGIVTDPVRGN--------LYWTDWNRDNPKIETSHMDG-TNRRILA----------QDNL-GLPN 170 (267)
T ss_dssp EEEECSS--C-SSEEEEEEETTTTE--------EEEEECCSSSCEEEEEETTS-CCCEEEE----------CTTC-SCEE
T ss_pred EEEEECC--C-CCccEEEEeeCCCE--------EEEEECCCCCcEEEEEecCC-CCcEEEE----------ECCC-CCCc
Confidence 4332211 1 23467888763 32 223222 35666666542 1111110 0111 2468
Q ss_pred EEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEE
Q 003087 165 CTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFV 244 (849)
Q Consensus 165 svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~L 244 (849)
.++++|++..|.++.... + .|...+.++.. ...+.. . + ..-..|++ |+..|
T Consensus 171 gia~d~~~~~lyv~d~~~----------~--~I~~~~~~g~~-~~~~~~--------~--~----~~P~gi~~--d~~~l 221 (267)
T 1npe_A 171 GLTFDAFSSQLCWVDAGT----------H--RAECLNPAQPG-RRKVLE--------G--L----QYPFAVTS--YGKNL 221 (267)
T ss_dssp EEEEETTTTEEEEEETTT----------T--EEEEEETTEEE-EEEEEE--------C--C----CSEEEEEE--ETTEE
T ss_pred EEEEcCCCCEEEEEECCC----------C--EEEEEecCCCc-eEEEec--------C--C----CCceEEEE--eCCEE
Confidence 999999988777665442 1 36666655421 111111 0 0 11234554 56666
Q ss_pred EEEe-CCCcEEEEecCCCc
Q 003087 245 ATSD-TNGCLYIFEMDKDN 262 (849)
Q Consensus 245 As~s-~Dgtv~LWd~~~~~ 262 (849)
..++ .++.|..+|..+++
T Consensus 222 yva~~~~~~v~~~d~~~g~ 240 (267)
T 1npe_A 222 YYTDWKTNSVIAMDLAISK 240 (267)
T ss_dssp EEEETTTTEEEEEETTTTE
T ss_pred EEEECCCCeEEEEeCCCCC
Confidence 6565 46899999998764
No 234
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.72 E-value=0.001 Score=80.65 Aligned_cols=119 Identities=10% Similarity=0.054 Sum_probs=66.2
Q ss_pred CEEEEEEC-CCCCEEEEEeC-C----CcEEEEecCCc-cceecccccccccccEEEEEecCCcccccccceeEEEEeCC-
Q 003087 56 ASIYGAWS-ESHDVLGIVDD-T----HTVYFFKANGE-EITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSD- 127 (849)
Q Consensus 56 ~v~~vafS-PDG~~LAs~~~-d----gtIrlWd~~g~-~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~D- 127 (849)
.+...+|| |||++||.+.+ + .+|+++|+.|. +. +.. ... ....+++|+||+.. |+....|
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~--l~~-~~~--~~~~~~~WspDg~~-------l~y~~~d~ 242 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQT--IAD-KVS--GTNGEIVWGPDHTS-------LFYVTKDE 242 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCC--CCC-CEE--EECSCCEECSSTTE-------EEEEEECT
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEe--CCc-ccc--CceeeEEEecCCCE-------EEEEEECC
Confidence 45789999 99999996543 2 25999999865 42 111 111 11234667766532 3222333
Q ss_pred ----CcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEec
Q 003087 128 ----GFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRC 203 (849)
Q Consensus 128 ----g~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~ 203 (849)
..|..+++.++..... ..+.........++.|||||+.|+..+... +...|.++++.
T Consensus 243 ~~~~~~v~~~~lgt~~~~~~---------lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~----------~~~~l~~~d~~ 303 (751)
T 2xe4_A 243 TLRENKVWRHVMGKLQSEDV---------CLYEEHNPLFSAFMYKAADTNTLCIGSQSP----------ETAEVHLLDLR 303 (751)
T ss_dssp TCCEEEEEEEETTSCGGGCE---------EEEECCCTTCEEEEEECTTSSEEEEEEECS----------SCEEEEEEESS
T ss_pred CCCCCEEEEEECCCCchhcE---------EEEecCCCceEEEEEECCCCCEEEEEecCC----------CCceEEEEECC
Confidence 2466666655432111 011111122467899999999998776543 12236667766
Q ss_pred CC
Q 003087 204 HN 205 (849)
Q Consensus 204 ~~ 205 (849)
++
T Consensus 304 ~~ 305 (751)
T 2xe4_A 304 KG 305 (751)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 235
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=97.72 E-value=0.0013 Score=79.09 Aligned_cols=189 Identities=13% Similarity=0.128 Sum_probs=106.6
Q ss_pred EEEEEECCCCCEEEEEeCCCc-------------------EEEEecC-Cccceeccccccc-----cccc-EE-EEEecC
Q 003087 57 SIYGAWSESHDVLGIVDDTHT-------------------VYFFKAN-GEEITRFTNKHLK-----VSLP-II-GLIAQD 109 (849)
Q Consensus 57 v~~vafSPDG~~LAs~~~dgt-------------------IrlWd~~-g~~~~~l~~~~~~-----~~~~-V~-~l~fs~ 109 (849)
+..++++|++.++..+..+++ |.-||.. |+.+.+....+.. ...+ +. .+.+
T Consensus 237 w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~-- 314 (689)
T 1yiq_A 237 WDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPI-- 314 (689)
T ss_dssp CSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEE--
T ss_pred ccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeecc--
Confidence 347899999999999988874 9999986 8776655432111 1111 11 1111
Q ss_pred CcccccccceeEEEEeCCCcEEEEEecCCCCccccc---ccc----------------------cCCc-c---eeccccC
Q 003087 110 ETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISS---ASA----------------------SSSG-L---TLRRQFP 160 (849)
Q Consensus 110 ~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~---~~~----------------------~~~~-~---~l~~~~~ 160 (849)
++. ....++..+.+|.++.+|..+|+...... ..+ +... . ...|++
T Consensus 315 ~G~----~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~- 389 (689)
T 1yiq_A 315 DGK----PRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAH- 389 (689)
T ss_dssp TTE----EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSS-
T ss_pred CCc----EEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCccccc-
Confidence 111 01136667899999999998887642111 000 0000 0 000111
Q ss_pred CceEEEEEcCCCceEEEEecCCCCccccCC------------CCC--------------------CceeeEEEecCCcCc
Q 003087 161 QNVICTDYHPELSLLSVVSNTDTSSLTSSG------------NSG--------------------PCCISLWRRCHNLEL 208 (849)
Q Consensus 161 ~~V~svafsPdg~lLas~g~d~t~~~~~~~------------~~G--------------------~~~I~lW~~~~~~~~ 208 (849)
.-..++|+|+..++++...+.....+... ..| ...|..||+.++.
T Consensus 390 -~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~-- 466 (689)
T 1yiq_A 390 -DWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQ-- 466 (689)
T ss_dssp -CSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTE--
T ss_pred -CCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCC--
Confidence 12348999999999887544100000000 000 0237778776542
Q ss_pred ccceeccccceeeccCCCccccccceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccc
Q 003087 209 EQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFA 269 (849)
Q Consensus 209 ~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~ 269 (849)
.++... +...+..-.++..|.+|++++.||.|+.||..+++. ++++.
T Consensus 467 -~~W~~~------------~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~-lw~~~ 513 (689)
T 1yiq_A 467 -AAWEVP------------YVTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEK-LWEQP 513 (689)
T ss_dssp -EEEEEE------------ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCE-EEEEE
T ss_pred -eEeEcc------------CCCCccCccceECCCEEEEECCCCcEEEEECCCCcc-ceeee
Confidence 222211 112344457788999999999999999999999865 55554
No 236
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=97.69 E-value=0.00016 Score=80.14 Aligned_cols=84 Identities=8% Similarity=0.019 Sum_probs=51.1
Q ss_pred EEEEEcCCCceEEEEec-C-CCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCC
Q 003087 164 ICTDYHPELSLLSVVSN-T-DTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQG 241 (849)
Q Consensus 164 ~svafsPdg~lLas~g~-d-~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG 241 (849)
..++|+|||+.+.++.. . +. . +...+ .+.++|+.+..-...|-. | .....|+|+|||
T Consensus 267 ~~v~~s~dg~~lyV~~~~~~~~-~---~~~~~--~~~ViD~~t~~vv~~i~v-----------g----~~p~gi~~s~Dg 325 (368)
T 1mda_H 267 QMVAKLKNTDGIMILTVEHSRS-C---LAAAE--NTSSVTASVGQTSGPISN-----------G----HDSDAIIAAQDG 325 (368)
T ss_dssp SCEEEETTTTEEEEEEEECSSC-T---TSCEE--EEEEEESSSCCEEECCEE-----------E----EEECEEEECCSS
T ss_pred eeeEEcCCCCEEEEEeccccCc-c---cccCC--CEEEEECCCCeEEEEEEC-----------C----CCcceEEECCCC
Confidence 34789999998887643 2 10 0 00000 145888776421111110 1 246689999999
Q ss_pred C-EEEEEe-CCCcEEEEecCCCcccccccc
Q 003087 242 K-FVATSD-TNGCLYIFEMDKDNFSLSKFA 269 (849)
Q Consensus 242 ~-~LAs~s-~Dgtv~LWd~~~~~~~l~~~~ 269 (849)
+ ++++.. .+++|.++|+.+.+. ++.++
T Consensus 326 ~~l~va~~~~~~~VsVID~~t~kv-v~~I~ 354 (368)
T 1mda_H 326 ASDNYANSAGTEVLDIYDAASDQD-QSSVE 354 (368)
T ss_dssp SCEEEEEETTTTEEEEEESSSCEE-EEECC
T ss_pred CEEEEEccCCCCeEEEEECCCCcE-EEEEE
Confidence 8 566666 599999999998864 44443
No 237
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=97.64 E-value=0.00072 Score=81.04 Aligned_cols=190 Identities=8% Similarity=0.054 Sum_probs=105.7
Q ss_pred EEEEEECCCCCEEEEEeCCC-------------------cEEEEecC-Cccceeccccccc------ccccEEEEEecCC
Q 003087 57 SIYGAWSESHDVLGIVDDTH-------------------TVYFFKAN-GEEITRFTNKHLK------VSLPIIGLIAQDE 110 (849)
Q Consensus 57 v~~vafSPDG~~LAs~~~dg-------------------tIrlWd~~-g~~~~~l~~~~~~------~~~~V~~l~fs~~ 110 (849)
+..++++|++.+|..+..++ +|..+|.. |+.+.+....+.+ .+.++. +.+..+
T Consensus 245 w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l-~~~~~d 323 (677)
T 1kb0_A 245 WDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMIL-ADIKIA 323 (677)
T ss_dssp CSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEE-EEEEET
T ss_pred ccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEE-EecccC
Confidence 34789999999999887764 58899986 7776554322110 011111 111112
Q ss_pred cccccccceeEEEEeCCCcEEEEEecCCCCccccc---cc----ccCCc---------------c---eeccccCCceEE
Q 003087 111 TDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISS---AS----ASSSG---------------L---TLRRQFPQNVIC 165 (849)
Q Consensus 111 ~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~---~~----~~~~~---------------~---~l~~~~~~~V~s 165 (849)
+.. ...+++.+.+|.|.++|..+|+...... .. ++... . .+.|++. =..
T Consensus 324 G~~----~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~--w~~ 397 (677)
T 1kb0_A 324 GKP----RKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHN--WHP 397 (677)
T ss_dssp TEE----EEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSC--SSC
T ss_pred CcE----eeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccC--CCC
Confidence 210 0236667889999999998887643211 00 00000 0 0011111 136
Q ss_pred EEEcCCCceEEEEecCCCCccccC------------------CC------------CCCceeeEEEecCCcCcccceecc
Q 003087 166 TDYHPELSLLSVVSNTDTSSLTSS------------------GN------------SGPCCISLWRRCHNLELEQLYTTQ 215 (849)
Q Consensus 166 vafsPdg~lLas~g~d~t~~~~~~------------------~~------------~G~~~I~lW~~~~~~~~~~l~~~~ 215 (849)
++|+|++.++++...+-....+.. .. .....|..||+.++ +.++...
T Consensus 398 ~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG---~~~W~~~ 474 (677)
T 1kb0_A 398 MSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQ---KAAWSVE 474 (677)
T ss_dssp CEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTT---EEEEEEE
T ss_pred ceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCC---cEEeecC
Confidence 899999999888654310000000 00 00124677777654 1222211
Q ss_pred ccceeeccCCCccccccceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccc
Q 003087 216 IEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFA 269 (849)
Q Consensus 216 ~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~ 269 (849)
+...++...++++|.+++.++.||.|+.||..+++. ++.+.
T Consensus 475 ------------~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~-lw~~~ 515 (677)
T 1kb0_A 475 ------------HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEK-LWEAP 515 (677)
T ss_dssp ------------ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCE-EEEEE
T ss_pred ------------CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCce-eeeee
Confidence 223456677888999999999999999999998865 55553
No 238
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.62 E-value=0.013 Score=63.30 Aligned_cols=235 Identities=11% Similarity=0.080 Sum_probs=121.8
Q ss_pred ceEEEEEcCCCCeEEEEeCCeEEEEecCCCCCcceeeeee--cCCCCEEEEEECCCCCEEEEEeCCCcEEEEecC-Cccc
Q 003087 12 KQVSLFISPRGERVAVAAVNQVTILQKDDDYQEPCGIFNC--TGLGASIYGAWSESHDVLGIVDDTHTVYFFKAN-GEEI 88 (849)
Q Consensus 12 ~v~slafSPdG~~LAsas~~~i~iw~~~~~~~~~~~~~~~--~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~-g~~~ 88 (849)
.+.+|+|+| ++.+|++..+.|.. . .|+ +..-..... .....+..++++++++.+|+++ +|.|.. ..+ |+.-
T Consensus 81 ~~~~i~~~~-~~~~~~g~~g~i~~-S-~Dg-G~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~g~v~~-S~DgG~tW 154 (327)
T 2xbg_A 81 RFNSVSFQG-NEGWIVGEPPIMLH-T-TDG-GQSWSQIPLDPKLPGSPRLIKALGNGSAEMITN-VGAIYR-TKDSGKNW 154 (327)
T ss_dssp EEEEEEEET-TEEEEEEETTEEEE-E-SST-TSSCEECCCCTTCSSCEEEEEEEETTEEEEEET-TCCEEE-ESSTTSSE
T ss_pred cEEEEEecC-CeEEEEECCCeEEE-E-CCC-CCCceECccccCCCCCeEEEEEECCCCEEEEeC-CccEEE-EcCCCCCC
Confidence 588999987 66666665664433 2 222 221111111 0123577899988898888775 565532 223 4332
Q ss_pred eecccccccccccEEEEEecCCcccccccceeEEEEeCCCcE-EEEEecCCCCcccccccccCCcceeccccCCceEEEE
Q 003087 89 TRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFL-HQIEISQDPSASISSASASSSGLTLRRQFPQNVICTD 167 (849)
Q Consensus 89 ~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v-~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~sva 167 (849)
..+... ....+.+++|.+++. ++..+.+|.+ +.+|-. +.. . . .+.......+..++
T Consensus 155 ~~~~~~---~~~~~~~~~~~~~~~--------~~~~g~~G~~~~S~d~g-G~t--W-~--------~~~~~~~~~~~~~~ 211 (327)
T 2xbg_A 155 QALVQE---AIGVMRNLNRSPSGE--------YVAVSSRGSFYSTWEPG-QTA--W-E--------PHNRTTSRRLHNMG 211 (327)
T ss_dssp EEEECS---CCCCEEEEEECTTSC--------EEEEETTSSEEEEECTT-CSS--C-E--------EEECCSSSCEEEEE
T ss_pred EEeecC---CCcceEEEEEcCCCc--------EEEEECCCcEEEEeCCC-CCc--e-e--------ECCCCCCCccceeE
Confidence 222111 123577888876432 3333455544 333210 111 1 0 01111234689999
Q ss_pred EcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEE
Q 003087 168 YHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATS 247 (849)
Q Consensus 168 fsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~ 247 (849)
++|+|+++++ +.++ .+..++.+++...+.+..+. .. +...+..|+|.|+++++|++
T Consensus 212 ~~~~g~~~~~-~~~G-------------~~~~s~~D~G~tW~~~~~~~--------~~--~~~~~~~v~~~~~~~~~~~g 267 (327)
T 2xbg_A 212 FTPDGRLWMI-VNGG-------------KIAFSDPDNSENWGELLSPL--------RR--NSVGFLDLAYRTPNEVWLAG 267 (327)
T ss_dssp ECTTSCEEEE-ETTT-------------EEEEEETTEEEEECCCBCTT--------SS--CCSCEEEEEESSSSCEEEEE
T ss_pred ECCCCCEEEE-eCCc-------------eEEEecCCCCCeeEeccCCc--------cc--CCcceEEEEecCCCEEEEEe
Confidence 9999987754 4444 13333222221111111000 00 22357899999999988865
Q ss_pred eCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCEEEEEEeCCcEEEEE
Q 003087 248 DTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNILILARKSSIITMID 317 (849)
Q Consensus 248 s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~la~a~~dgti~lwd 317 (849)
. +|.| ++..+++ ++|...... . .....+.+|.|.+++.+++++.+|+|.-++
T Consensus 268 ~-~g~i-~~S~DgG----~tW~~~~~~-------~-----~~~~~~~~v~~~~~~~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 268 G-AGAL-LCSQDGG----QTWQQDVDV-------K-----KVPSNFYKILFFSPDQGFILGQKGILLRYV 319 (327)
T ss_dssp S-TTCE-EEESSTT----SSCEECGGG-------T-----TSSSCCCEEEEEETTEEEEECSTTEEEEEC
T ss_pred C-CCeE-EEeCCCC----cccEEcCcc-------C-----CCCCCeEEEEEECCCceEEEcCCceEEEEc
Confidence 4 7777 5566654 244321100 0 012346788898888888888899776554
No 239
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.56 E-value=0.011 Score=61.68 Aligned_cols=210 Identities=12% Similarity=0.096 Sum_probs=115.0
Q ss_pred ccccceEEEEEcCCCCeEEEEeC--CeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecC-
Q 003087 8 RKTKKQVSLFISPRGERVAVAAV--NQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKAN- 84 (849)
Q Consensus 8 ~~~~~v~slafSPdG~~LAsas~--~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~- 84 (849)
.-.+.+..|+++|++++|.++++ +.|...+.. +.........+......|++.++|++.++...++.+.++++.
T Consensus 24 g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~---g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~ 100 (255)
T 3qqz_A 24 GITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN---GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTP 100 (255)
T ss_dssp TCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT---CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECT
T ss_pred CcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC---CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCC
Confidence 34467899999999988877664 466666654 344444443345678899999999988888888999999875
Q ss_pred -Cc--cceecccc--cccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCC----cccccccccCCccee
Q 003087 85 -GE--EITRFTNK--HLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPS----ASISSASASSSGLTL 155 (849)
Q Consensus 85 -g~--~~~~l~~~--~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~----~~~~~~~~~~~~~~l 155 (849)
+. .+....-. ....+.-.-+|++.|++. +|+++...+...+|.+. +.. ..... . ..+
T Consensus 101 ~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~-------~L~va~E~~p~~i~~~~-g~~~~~~l~i~~-----~-~~~ 166 (255)
T 3qqz_A 101 NSEVKILKKIKIPLQESPTNCGFEGLAYSRQDH-------TFWFFKEKNPIEVYKVN-GLLSSNELHISK-----D-KAL 166 (255)
T ss_dssp TCCEEEEEEEECCCSSCCCSSCCEEEEEETTTT-------EEEEEEESSSEEEEEEE-STTCSSCCEEEE-----C-HHH
T ss_pred CCeeeeeeeeccccccccccCCcceEEEeCCCC-------EEEEEECcCCceEEEEc-ccccCCceeeec-----c-hhh
Confidence 32 11111100 011123457888877542 24555665566777765 210 11110 0 001
Q ss_pred cc-ccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccce
Q 003087 156 RR-QFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPK 234 (849)
Q Consensus 156 ~~-~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~ 234 (849)
.+ .....+.+++|+|....|.+.|..+ ..+..+...|. .++.+.+..+.. |+-.. ...--.
T Consensus 167 ~~~~~~~d~S~l~~dp~tg~lliLS~~s-~~L~~~d~~g~-~~~~~~L~~g~~----------~l~~~------~~qpEG 228 (255)
T 3qqz_A 167 QRQFTLDDVSGAEFNQQKNTLLVLSHES-RALQEVTLVGE-VIGEMSLTKGSR----------GLSHN------IKQAEG 228 (255)
T ss_dssp HHTCCSSCCCEEEEETTTTEEEEEETTT-TEEEEECTTCC-EEEEEECSTTGG----------GCSSC------CCSEEE
T ss_pred ccccccCCceeEEEcCCCCeEEEEECCC-CeEEEEcCCCC-EEEEEEcCCccC----------Ccccc------cCCCCe
Confidence 10 1123479999999876666666554 12222222332 233333332110 10000 012236
Q ss_pred EEEccCCCEEEEEeCCCcE
Q 003087 235 VLISPQGKFVATSDTNGCL 253 (849)
Q Consensus 235 vafSPDG~~LAs~s~Dgtv 253 (849)
|+|.|+|++.++ +.-.-+
T Consensus 229 ia~d~~G~lyIv-sE~n~~ 246 (255)
T 3qqz_A 229 VAMDASGNIYIV-SEPNRF 246 (255)
T ss_dssp EEECTTCCEEEE-ETTTEE
T ss_pred eEECCCCCEEEE-cCCceE
Confidence 999999986555 555533
No 240
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=97.39 E-value=0.0022 Score=74.63 Aligned_cols=215 Identities=8% Similarity=-0.025 Sum_probs=116.9
Q ss_pred ceEEEEE-c-CCCCeEEEEe-------------------CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEE
Q 003087 12 KQVSLFI-S-PRGERVAVAA-------------------VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLG 70 (849)
Q Consensus 12 ~v~slaf-S-PdG~~LAsas-------------------~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LA 70 (849)
.+..++| + |||++|.+++ ++.+.+.|.+. .+......-.+ .-..+++||||+++.
T Consensus 135 ~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t--~~v~~qI~Vgg--~pd~~~~spdGk~~~ 210 (595)
T 1fwx_A 135 GIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADK--WEVAWQVLVSG--NLDNCDADYEGKWAF 210 (595)
T ss_dssp SEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTT--TEEEEEEEESS--CCCCEEECSSSSEEE
T ss_pred CCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCC--CeEEEEEEeCC--CccceEECCCCCEEE
Confidence 3677888 6 9999997774 23677777653 22222222112 234689999999999
Q ss_pred EEeCCC--------------------------------------cEEEEecCC---cc-ceecccccccccccEEEEEec
Q 003087 71 IVDDTH--------------------------------------TVYFFKANG---EE-ITRFTNKHLKVSLPIIGLIAQ 108 (849)
Q Consensus 71 s~~~dg--------------------------------------tIrlWd~~g---~~-~~~l~~~~~~~~~~V~~l~fs 108 (849)
+++.+. .|.|.|... +. +..+.- ...-.++.|+
T Consensus 211 vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv-----g~~PhGv~~s 285 (595)
T 1fwx_A 211 STSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI-----ANNPHGCNMA 285 (595)
T ss_dssp EEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEE-----ESSCCCEEEC
T ss_pred EEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEec-----CCCceEEEEc
Confidence 988653 355555432 11 112211 1123467777
Q ss_pred CCcccccccceeEEEEeCCCcEEEEEecCCCCcc--cccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCcc
Q 003087 109 DETDVQRSCLCSFTVFTSDGFLHQIEISQDPSAS--ISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSL 186 (849)
Q Consensus 109 ~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~ 186 (849)
||+... ++....+.+|.++|+.+..... .+.... ....+.. -..+-..++|+||| .+.+.-.-+
T Consensus 286 PDGk~v------~V~~~~s~~VsVid~~~~~~~~~~~l~~~~-~v~~~v~--vG~gP~h~aF~~dG-~aY~t~~ld---- 351 (595)
T 1fwx_A 286 PDKKHL------CVAGKLSPTVTVLDVTRFDAVFYENADPRS-AVVAEPE--LGLGPLHTAFDGRG-NAYTSLFLD---- 351 (595)
T ss_dssp TTSSEE------EEECTTSSBEEEEEGGGHHHHHHSCCCGGG-GEEECCB--CCSCEEEEEECTTS-EEEEEETTT----
T ss_pred CCCCEE------EEeCCCCCeEEEEECcccccccccccCccc-ceEEEcC--CCCCcceEEECCCC-eEEEEEecC----
Confidence 766421 2223567899999998532100 000000 0000111 11357899999999 555554432
Q ss_pred ccCCCCCCceeeEEEecCCc------Ccccce-eccccceeeccCCCccccccceEEEccCCCEEEEEeC---CCc----
Q 003087 187 TSSGNSGPCCISLWRRCHNL------ELEQLY-TTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDT---NGC---- 252 (849)
Q Consensus 187 ~~~~~~G~~~I~lW~~~~~~------~~~~l~-~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~---Dgt---- 252 (849)
+ .|..|+++... ...++. .... + -..| |......+.++|||++|.++.. |+-
T Consensus 352 ------s--qV~kwdi~~a~~~~~g~~~~~vi~kidV-~---yqpG--h~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~g 417 (595)
T 1fwx_A 352 ------S--QVVKWNIEDAIRAYAGEKVDPIKDKLDV-H---YQPG--HLKTVMGETLDATNDWLVCLSKFSKDRFLNVG 417 (595)
T ss_dssp ------T--EEEEEEHHHHHHHHHTCSCCCEEEEEEC-S---SCEE--EEEETTTTSTTCCSSEEEEEESCCTTSSCCCC
T ss_pred ------C--cEEEEEhhHhhhhhcccccceeEEEeec-c---cccc--cceeccceEeCCCCCEEEEcCCCCccccccCC
Confidence 1 37889987621 101111 1000 0 0113 4444556788999999998853 332
Q ss_pred ------EEEEecCCCcc
Q 003087 253 ------LYIFEMDKDNF 263 (849)
Q Consensus 253 ------v~LWd~~~~~~ 263 (849)
-.|.|+.++++
T Consensus 418 p~~~~~~ql~dis~~~m 434 (595)
T 1fwx_A 418 PLKPENDQLIDISGDKM 434 (595)
T ss_dssp SSCCEEEEEEECSSSSC
T ss_pred CCCCCcceEEEcCCCcE
Confidence 28999987754
No 241
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.38 E-value=0.0075 Score=63.50 Aligned_cols=212 Identities=10% Similarity=-0.005 Sum_probs=118.7
Q ss_pred CEEEEEECCCCCEEEEEeC--CCcEEEEecC-CccceecccccccccccEEEEEecCCcccccccceeEEEE-eCCCcEE
Q 003087 56 ASIYGAWSESHDVLGIVDD--THTVYFFKAN-GEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVF-TSDGFLH 131 (849)
Q Consensus 56 ~v~~vafSPDG~~LAs~~~--dgtIrlWd~~-g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~-s~Dg~v~ 131 (849)
....++|+|||++.++.+. +++|+++|+. |+.+.++.-.. .....++++..+ ++++. -.++.+.
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~---~~fgeGi~~~g~---------~lyv~t~~~~~v~ 89 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDD---SYFGEGLTLLNE---------KLYQVVWLKNIGF 89 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCT---TCCEEEEEEETT---------EEEEEETTCSEEE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCC---CcceEEEEEeCC---------EEEEEEecCCEEE
Confidence 4578999999877777654 6899999996 66655543211 112335555432 23333 3678899
Q ss_pred EEEecCCCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccc
Q 003087 132 QIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQL 211 (849)
Q Consensus 132 lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l 211 (849)
++|..+.+....+. . +.+.+ ..++|||+.|+++..++ .|.+.|..+..-...+
T Consensus 90 viD~~t~~v~~~i~---------~--g~~~g---~glt~Dg~~l~vs~gs~-------------~l~viD~~t~~v~~~I 142 (266)
T 2iwa_A 90 IYDRRTLSNIKNFT---------H--QMKDG---WGLATDGKILYGSDGTS-------------ILYEIDPHTFKLIKKH 142 (266)
T ss_dssp EEETTTTEEEEEEE---------C--CSSSC---CEEEECSSSEEEECSSS-------------EEEEECTTTCCEEEEE
T ss_pred EEECCCCcEEEEEE---------C--CCCCe---EEEEECCCEEEEECCCC-------------eEEEEECCCCcEEEEE
Confidence 99987655432211 1 11112 33666888877653222 3666766543111111
Q ss_pred eeccccceeeccCCCccccccceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCC
Q 003087 212 YTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPIS 291 (849)
Q Consensus 212 ~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~ 291 (849)
.... .+. .....+.+.|. ||++.|+...+++|.+-|..+++. +..+...+..... .. .......
T Consensus 143 ~Vg~--------~~~-p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V-~~~I~~~g~~~~~----~~-~~~~~~~ 206 (266)
T 2iwa_A 143 NVKY--------NGH-RVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTL-LGWILLPNLRKKL----ID-EGFRDID 206 (266)
T ss_dssp ECEE--------TTE-ECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCE-EEEEECHHHHHHH----HH-TTCTTCC
T ss_pred EECC--------CCc-ccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcE-EEEEECCCccccc----cc-ccccccC
Confidence 1100 010 11135578888 887777776789999999998865 4454432100000 00 0001113
Q ss_pred CcEEEEEecCCE-E-EEEEeCCcEEEEEecCCc
Q 003087 292 DITDFAWWSDNI-L-ILARKSSIITMIDVLSGL 322 (849)
Q Consensus 292 ~v~~vaws~D~~-l-a~a~~dgti~lwdl~~~~ 322 (849)
.+..|+|.||+. + +++...++|.+.++....
T Consensus 207 v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~~ 239 (266)
T 2iwa_A 207 VLNGIAWDQENKRIFVTGKLWPKLFEIKLHLVR 239 (266)
T ss_dssp CEEEEEEETTTTEEEEEETTCSEEEEEEEEECC
T ss_pred ceEEEEEcCCCCEEEEECCCCCeEEEEEEeccc
Confidence 457899999874 4 455577888888887643
No 242
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.37 E-value=0.019 Score=61.88 Aligned_cols=198 Identities=10% Similarity=0.014 Sum_probs=103.7
Q ss_pred cceEEEEEcCCCCeEEEEeCCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCCcccee
Q 003087 11 KKQVSLFISPRGERVAVAAVNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANGEEITR 90 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~~~~~ 90 (849)
+.+..|+++++++.+|++.++.| +.-.|+ +..-..........+..++|+|+|+++|++...+..+-+|-.|+.-..
T Consensus 122 ~~~~~i~~~~~~~~~~~~~~g~v--~~S~Dg-G~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~ 198 (327)
T 2xbg_A 122 GSPRLIKALGNGSAEMITNVGAI--YRTKDS-GKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEP 198 (327)
T ss_dssp SCEEEEEEEETTEEEEEETTCCE--EEESST-TSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEE
T ss_pred CCeEEEEEECCCCEEEEeCCccE--EEEcCC-CCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeE
Confidence 35788999999998888766654 322221 221111111124568899999999999887654444444432443222
Q ss_pred cccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEcC
Q 003087 91 FTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHP 170 (849)
Q Consensus 91 l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsP 170 (849)
+... ....+.++++.+++. +.+.+.+|.+.......+..-.... . . .+. ....+.+++|.|
T Consensus 199 ~~~~---~~~~~~~~~~~~~g~--------~~~~~~~G~~~~s~~D~G~tW~~~~----~-~-~~~--~~~~~~~v~~~~ 259 (327)
T 2xbg_A 199 HNRT---TSRRLHNMGFTPDGR--------LWMIVNGGKIAFSDPDNSENWGELL----S-P-LRR--NSVGFLDLAYRT 259 (327)
T ss_dssp EECC---SSSCEEEEEECTTSC--------EEEEETTTEEEEEETTEEEEECCCB----C-T-TSS--CCSCEEEEEESS
T ss_pred CCCC---CCCccceeEECCCCC--------EEEEeCCceEEEecCCCCCeeEecc----C-C-ccc--CCcceEEEEecC
Confidence 2111 123577788766432 4445677776654311111100000 0 0 001 112589999999
Q ss_pred CCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEEeCC
Q 003087 171 ELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTN 250 (849)
Q Consensus 171 dg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~D 250 (849)
++.++|++ .+++ | ++..+++...+.+... .+ +...+++|+|+++++. +.++.+
T Consensus 260 ~~~~~~~g-~~g~-------------i-~~S~DgG~tW~~~~~~---------~~--~~~~~~~v~~~~~~~~-~~~G~~ 312 (327)
T 2xbg_A 260 PNEVWLAG-GAGA-------------L-LCSQDGGQTWQQDVDV---------KK--VPSNFYKILFFSPDQG-FILGQK 312 (327)
T ss_dssp SSCEEEEE-STTC-------------E-EEESSTTSSCEECGGG---------TT--SSSCCCEEEEEETTEE-EEECST
T ss_pred CCEEEEEe-CCCe-------------E-EEeCCCCcccEEcCcc---------CC--CCCCeEEEEEECCCce-EEEcCC
Confidence 99887765 4431 2 2333333222111100 01 1235778999877764 456788
Q ss_pred CcEEEEe
Q 003087 251 GCLYIFE 257 (849)
Q Consensus 251 gtv~LWd 257 (849)
|+|.-++
T Consensus 313 G~i~~~~ 319 (327)
T 2xbg_A 313 GILLRYV 319 (327)
T ss_dssp TEEEEEC
T ss_pred ceEEEEc
Confidence 9765443
No 243
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=97.35 E-value=0.0017 Score=77.84 Aligned_cols=72 Identities=14% Similarity=0.097 Sum_probs=50.1
Q ss_pred eEEEccCCCEEEEEeCC-------------------------------------------CcEEEEecCCCccccccccc
Q 003087 234 KVLISPQGKFVATSDTN-------------------------------------------GCLYIFEMDKDNFSLSKFAC 270 (849)
Q Consensus 234 ~vafSPDG~~LAs~s~D-------------------------------------------gtv~LWd~~~~~~~l~~~~~ 270 (849)
.++|+|+++++.+...+ |+|..||+.+++. +++++.
T Consensus 397 ~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~-~W~~~~ 475 (677)
T 1kb0_A 397 PMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKA-AWSVEH 475 (677)
T ss_dssp CCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEE-EEEEEE
T ss_pred CceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcE-EeecCC
Confidence 79999999998876432 7899999998754 444331
Q ss_pred ccccccccccccCCCCCCCCCCcEEEEEec-CCEEEEEEeCCcEEEEEecCCcccc
Q 003087 271 GERFDLQVADSLFDGRTKPISDITDFAWWS-DNILILARKSSIITMIDVLSGLKVK 325 (849)
Q Consensus 271 ~~~~~~~~~~~l~~~~~~~~~~v~~vaws~-D~~la~a~~dgti~lwdl~~~~~l~ 325 (849)
. .++....++. ++.+.+++.||.+++||..+++.+-
T Consensus 476 ~-------------------~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw 512 (677)
T 1kb0_A 476 V-------------------SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLW 512 (677)
T ss_dssp S-------------------SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred C-------------------CCCcCcceEeCCCEEEEECCCCcEEEEECCCCceee
Confidence 1 0112222334 5567788899999999999998653
No 244
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=97.30 E-value=0.0029 Score=75.96 Aligned_cols=55 Identities=11% Similarity=0.037 Sum_probs=36.6
Q ss_pred CCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEe-cCCEEEEEEeCCcEEEEEecCCccc
Q 003087 250 NGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWW-SDNILILARKSSIITMIDVLSGLKV 324 (849)
Q Consensus 250 Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws-~D~~la~a~~dgti~lwdl~~~~~l 324 (849)
+|+|+-||+.+++. +++++... ..... .+. .++.+.+++.||.|+.||..+|+.+
T Consensus 454 ~g~l~A~D~~tG~~-~W~~~~~~---------------~~~~g----~~~tagglvf~gt~dg~l~a~D~~tG~~l 509 (689)
T 1yiq_A 454 SGKLIAWDPVKQQA-AWEVPYVT---------------IFNGG----TLSTAGNLVFEGSADGRVIAYAADTGEKL 509 (689)
T ss_dssp EEEEEEEETTTTEE-EEEEEESS---------------SCCCC----EEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred ceeEEEEECCCCCe-EeEccCCC---------------CccCc----cceECCCEEEEECCCCcEEEEECCCCccc
Confidence 48899999998854 34433110 00111 223 4566778899999999999999865
No 245
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=97.27 E-value=0.002 Score=68.44 Aligned_cols=225 Identities=13% Similarity=0.099 Sum_probs=119.6
Q ss_pred ceEEEEEcCCCCeEEEEeCCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCCccceec
Q 003087 12 KQVSLFISPRGERVAVAAVNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANGEEITRF 91 (849)
Q Consensus 12 ~v~slafSPdG~~LAsas~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~~~~~l 91 (849)
.+.++++.++|++.+ ++.+ +..++.. +...-.+... .......++. +..|..++.++.|..+|..|+.....
T Consensus 61 ~~~~~~~~~~g~l~v-~t~~-l~~~d~~---g~~~~~~~~~-~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~g~~~~~~ 132 (330)
T 3hxj_A 61 IECRPSIGKDGTIYF-GSDK-VYAINPD---GTEKWRFDTK-KAIVSDFTIF--EDILYVTSMDGHLYAINTDGTEKWRF 132 (330)
T ss_dssp EEECCEETTTTEECC-SSCE-EEEECCC---GGGGGGSCC------CCEEEE--TTEEEEECTTSEEEEECTTSCEEEEE
T ss_pred cccceEEecCCcEEE-ecCc-EEEECCC---CcEEEEEECC-CCcccCceEE--CCEEEEEecCCEEEEEcCCCCEEEEE
Confidence 457788888887654 3334 6666642 2222111111 1112222333 44566677788899999887655444
Q ss_pred ccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEcCC
Q 003087 92 TNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPE 171 (849)
Q Consensus 92 ~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPd 171 (849)
.... ..+.+++..++ ..+.+++.++.|..++.. +..... +... ...+.++.+.++
T Consensus 133 ~~~~----~~~~~~~~~~~--------g~l~vgt~~~~l~~~d~~-g~~~~~-----------~~~~-~~~~~~~~~d~~ 187 (330)
T 3hxj_A 133 KTKK----AIYATPIVSED--------GTIYVGSNDNYLYAINPD-GTEKWR-----------FKTN-DAITSAASIGKD 187 (330)
T ss_dssp ECSS----CCCSCCEECTT--------SCEEEECTTSEEEEECTT-SCEEEE-----------EECS-SCCCSCCEECTT
T ss_pred cCCC----ceeeeeEEcCC--------CEEEEEcCCCEEEEECCC-CCEeEE-----------EecC-CCceeeeEEcCC
Confidence 3221 11222232222 235566777888888876 443211 1111 224777888889
Q ss_pred CceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEEeCCC
Q 003087 172 LSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNG 251 (849)
Q Consensus 172 g~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dg 251 (849)
|.+.+ ++ .+ |..++..+ ..++... . ....+.++.+.+||++.+ ++.+|
T Consensus 188 g~l~v-~t-~~--------------l~~~d~~g----~~~~~~~---------~--~~~~~~~~~~~~~g~l~v-~t~~~ 235 (330)
T 3hxj_A 188 GTIYF-GS-DK--------------VYAINPDG----TEKWNFY---------A--GYWTVTRPAISEDGTIYV-TSLDG 235 (330)
T ss_dssp CCEEE-ES-SS--------------EEEECTTS----CEEEEEC---------C--SSCCCSCCEECTTSCEEE-EETTT
T ss_pred CEEEE-Ee-CE--------------EEEECCCC----cEEEEEc---------c--CCcceeceEECCCCeEEE-EcCCC
Confidence 98764 33 32 55555221 1111110 0 224577899999997666 55677
Q ss_pred cEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCEEEEEEeCCcEEEEEecCCc
Q 003087 252 CLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNILILARKSSIITMIDVLSGL 322 (849)
Q Consensus 252 tv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~la~a~~dgti~lwdl~~~~ 322 (849)
.|..++..+. .++.+... . ..+..+...+++.|.+++.+|.|..+|. +++
T Consensus 236 gl~~~~~~g~--~~~~~~~~---------------~---~~~~~~~~~~~g~l~v~t~~ggl~~~d~-~g~ 285 (330)
T 3hxj_A 236 HLYAINPDGT--EKWRFKTG---------------K---RIESSPVIGNTDTIYFGSYDGHLYAINP-DGT 285 (330)
T ss_dssp EEEEECTTSC--EEEEEECS---------------S---CCCSCCEECTTSCEEEECTTCEEEEECT-TSC
T ss_pred eEEEECCCCC--EeEEeeCC---------------C---CccccceEcCCCeEEEecCCCCEEEECC-CCc
Confidence 7877775443 22332210 0 1112234456788888988888998884 554
No 246
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.20 E-value=0.016 Score=61.85 Aligned_cols=210 Identities=9% Similarity=-0.031 Sum_probs=108.7
Q ss_pred cceEEEEEcC-CCCeEEEEeCCeEEEEecCCCCCcceeeee--ecC--CCCEEEEEECC-CCCEEEEEeC----------
Q 003087 11 KKQVSLFISP-RGERVAVAAVNQVTILQKDDDYQEPCGIFN--CTG--LGASIYGAWSE-SHDVLGIVDD---------- 74 (849)
Q Consensus 11 ~~v~slafSP-dG~~LAsas~~~i~iw~~~~~~~~~~~~~~--~~~--~~~v~~vafSP-DG~~LAs~~~---------- 74 (849)
+.+..++++| +|+++++...+.|..++..++. ...+. ..+ ......+++.| ||++.++-..
T Consensus 80 ~~p~gi~~~~~~g~l~v~d~~~~i~~~d~~~g~---~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~ 156 (322)
T 2fp8_A 80 GRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGH---ATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQ 156 (322)
T ss_dssp CCEEEEEEETTTTEEEEEETTTEEEEECTTCEE---CEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHH
T ss_pred CCCceEEEcCCCCcEEEEECCCCEEEEeCCCCE---EEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccce
Confidence 3578999998 7776655455567777654221 11111 111 23457899999 9998876543
Q ss_pred -------CCcEEEEecCCccceecccccccccccEEEEEecCCcccccccceeEEEE-eCCCcEEEEEecCCCCcccccc
Q 003087 75 -------THTVYFFKANGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVF-TSDGFLHQIEISQDPSASISSA 146 (849)
Q Consensus 75 -------dgtIrlWd~~g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~-s~Dg~v~lw~~~~~~~~~~~~~ 146 (849)
+|.|..+|..+..+..+... . ..-.+|+|++++.. ++++ +.++.|..+++..+..... +
T Consensus 157 ~~~~~~~~g~v~~~d~~~~~~~~~~~~-~---~~p~gia~~~dg~~-------lyv~d~~~~~I~~~~~~~~~~~~~-~- 223 (322)
T 2fp8_A 157 IMDTSDKTGRLIKYDPSTKETTLLLKE-L---HVPGGAEVSADSSF-------VLVAEFLSHQIVKYWLEGPKKGTA-E- 223 (322)
T ss_dssp HHHHTCCCEEEEEEETTTTEEEEEEEE-E---SCCCEEEECTTSSE-------EEEEEGGGTEEEEEESSSTTTTCE-E-
T ss_pred ehcccCCCceEEEEeCCCCEEEEeccC-C---ccCcceEECCCCCE-------EEEEeCCCCeEEEEECCCCcCCcc-c-
Confidence 36788888764443332111 0 12346788776432 3333 4567888888764321110 0
Q ss_pred cccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCC
Q 003087 147 SASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGH 226 (849)
Q Consensus 147 ~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~ 226 (849)
.+. ..+. ...+++.++|++.++...... .. ...+ ..-+++.++.. .+.+. .+..+.|.
T Consensus 224 -------~~~-~~~g-P~gi~~d~~G~l~va~~~~~~-~~---~~~~-~~~~v~~~d~~--G~~~~------~~~~~~g~ 281 (322)
T 2fp8_A 224 -------VLV-KIPN-PGNIKRNADGHFWVSSSEELD-GN---MHGR-VDPKGIKFDEF--GNILE------VIPLPPPF 281 (322)
T ss_dssp -------EEE-ECSS-EEEEEECTTSCEEEEEEEETT-SS---TTSC-EEEEEEEECTT--SCEEE------EEECCTTT
T ss_pred -------eEE-eCCC-CCCeEECCCCCEEEEecCccc-cc---ccCC-CccEEEEECCC--CCEEE------EEECCCCC
Confidence 111 1122 577899999997765433100 00 0000 00123333321 11111 11111110
Q ss_pred ccccccceEEEccCCCEEEEEeCCCcEEEEecCC
Q 003087 227 EVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDK 260 (849)
Q Consensus 227 ~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~ 260 (849)
....+..+++ .+|++.++...++.|..++++.
T Consensus 282 -~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 282 -AGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp -TTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred -ccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 0234566777 5787777767788899888764
No 247
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.18 E-value=0.03 Score=61.20 Aligned_cols=74 Identities=11% Similarity=0.080 Sum_probs=46.6
Q ss_pred ccceEEEEEcCCCCeEEEEeCCeEEEEecCCCCCcceeeee--ecCCCCEEEEEECCC----CCEEEEEeCC-----CcE
Q 003087 10 TKKQVSLFISPRGERVAVAAVNQVTILQKDDDYQEPCGIFN--CTGLGASIYGAWSES----HDVLGIVDDT-----HTV 78 (849)
Q Consensus 10 ~~~v~slafSPdG~~LAsas~~~i~iw~~~~~~~~~~~~~~--~~~~~~v~~vafSPD----G~~LAs~~~d-----gtI 78 (849)
....+.++|+|||+++++-..+.|.+++ ++...+..... ..+......|+|+|| |.+.++-... +.|
T Consensus 30 l~~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 30 LEVPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp CSCEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CCCceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 3567899999999977766678888887 22111111111 112346689999999 4444444332 567
Q ss_pred EEEecCC
Q 003087 79 YFFKANG 85 (849)
Q Consensus 79 rlWd~~g 85 (849)
..++..+
T Consensus 108 ~r~~~~~ 114 (352)
T 2ism_A 108 VRLRHLG 114 (352)
T ss_dssp EEEEECS
T ss_pred EEEEeCC
Confidence 7787764
No 248
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.17 E-value=0.055 Score=59.22 Aligned_cols=75 Identities=11% Similarity=0.010 Sum_probs=47.3
Q ss_pred ccceEEEEEcCCCCeEEEEeCCeEEEEecCCCCCcceeeee--ecCCCCEEEEEECCC----CCEEEEEeC---C----C
Q 003087 10 TKKQVSLFISPRGERVAVAAVNQVTILQKDDDYQEPCGIFN--CTGLGASIYGAWSES----HDVLGIVDD---T----H 76 (849)
Q Consensus 10 ~~~v~slafSPdG~~LAsas~~~i~iw~~~~~~~~~~~~~~--~~~~~~v~~vafSPD----G~~LAs~~~---d----g 76 (849)
....+.++|.|||+++++-.++.|.+++. ++. .+..... ..+......|+|+|| |.+.++-.. + +
T Consensus 28 l~~P~~ia~~pdG~l~V~e~~g~I~~~d~-~G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLVTERPGRLVLISP-SGK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp CSCEEEEEEEETTEEEEEETTTEEEEECS-SCE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCCeEEEEcCCCeEEEEeCCCEEEEEeC-CCc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 45678999999999777766788888763 221 2222111 112356789999998 555554432 3 5
Q ss_pred cEEEEecCCc
Q 003087 77 TVYFFKANGE 86 (849)
Q Consensus 77 tIrlWd~~g~ 86 (849)
.|..|+..+.
T Consensus 106 ~v~r~~~~~~ 115 (354)
T 3a9g_A 106 RVIRGRLDGS 115 (354)
T ss_dssp EEEEEEECSS
T ss_pred EEEEEEECCC
Confidence 6777776653
No 249
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=97.14 E-value=0.011 Score=62.49 Aligned_cols=218 Identities=9% Similarity=-0.000 Sum_probs=116.3
Q ss_pred CCCeEEEEeCCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCCccceecccccccccc
Q 003087 21 RGERVAVAAVNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANGEEITRFTNKHLKVSL 100 (849)
Q Consensus 21 dG~~LAsas~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~~~~~l~~~~~~~~~ 100 (849)
+|.+.+...++.+..++.. + ...-.... ....+.+++..++|++. .++.++.|..+|..|+.+....... .
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g--~~~~~~~~-~~~~~~~~~~~~~g~l~-vgt~~~~l~~~d~~g~~~~~~~~~~----~ 177 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-G--TEKWRFKT-KKAIYATPIVSEDGTIY-VGSNDNYLYAINPDGTEKWRFKTND----A 177 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-S--CEEEEEEC-SSCCCSCCEECTTSCEE-EECTTSEEEEECTTSCEEEEEECSS----C
T ss_pred CCEEEEEecCCEEEEEcCC-C--CEEEEEcC-CCceeeeeEEcCCCEEE-EEcCCCEEEEECCCCCEeEEEecCC----C
Confidence 5554443336778888754 2 22222221 23345677888899855 4667789999998876554443211 1
Q ss_pred cEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEec
Q 003087 101 PIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSN 180 (849)
Q Consensus 101 ~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~ 180 (849)
.+.++.+.+++ .+.+++ +.|..++ .++..... +. .....+.++...++|.+.+ ++.
T Consensus 178 ~~~~~~~d~~g--------~l~v~t--~~l~~~d-~~g~~~~~-----------~~-~~~~~~~~~~~~~~g~l~v-~t~ 233 (330)
T 3hxj_A 178 ITSAASIGKDG--------TIYFGS--DKVYAIN-PDGTEKWN-----------FY-AGYWTVTRPAISEDGTIYV-TSL 233 (330)
T ss_dssp CCSCCEECTTC--------CEEEES--SSEEEEC-TTSCEEEE-----------EC-CSSCCCSCCEECTTSCEEE-EET
T ss_pred ceeeeEEcCCC--------EEEEEe--CEEEEEC-CCCcEEEE-----------Ec-cCCcceeceEECCCCeEEE-EcC
Confidence 23333332222 244445 7777777 44332211 11 1123488899999998764 444
Q ss_pred CCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEEeCCCcEEEEecCC
Q 003087 181 TDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDK 260 (849)
Q Consensus 181 d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~ 260 (849)
++ .|..++..+ ..++... . ....+.++.+.++|++. .++.+|.|..+|..
T Consensus 234 ~~-------------gl~~~~~~g----~~~~~~~------~-----~~~~~~~~~~~~~g~l~-v~t~~ggl~~~d~~- 283 (330)
T 3hxj_A 234 DG-------------HLYAINPDG----TEKWRFK------T-----GKRIESSPVIGNTDTIY-FGSYDGHLYAINPD- 283 (330)
T ss_dssp TT-------------EEEEECTTS----CEEEEEE------C-----SSCCCSCCEECTTSCEE-EECTTCEEEEECTT-
T ss_pred CC-------------eEEEECCCC----CEeEEee------C-----CCCccccceEcCCCeEE-EecCCCCEEEECCC-
Confidence 43 133343222 1111100 0 11223456677777654 46778889999864
Q ss_pred CcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCEEEEEEeCCcEEEEEecC
Q 003087 261 DNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNILILARKSSIITMIDVLS 320 (849)
Q Consensus 261 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~la~a~~dgti~lwdl~~ 320 (849)
++. ++.+.. . ...+.++...+||.|.+++.+|.+.+.....
T Consensus 284 g~~-~~~~~~------------~------~~~~~~~~~d~~g~l~~gt~~G~~~~~~~~~ 324 (330)
T 3hxj_A 284 GTE-KWNFET------------G------SWIIATPVIDENGTIYFGTRNGKFYALFNLE 324 (330)
T ss_dssp SCE-EEEEEC------------S------SCCCSCCEECTTCCEEEECTTSCEEEEEC--
T ss_pred CcE-EEEEEc------------C------CccccceEEcCCCEEEEEcCCCeEEEEeccc
Confidence 322 223221 0 0123344555788899999999998876543
No 250
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.07 E-value=0.04 Score=57.89 Aligned_cols=209 Identities=11% Similarity=0.020 Sum_probs=110.1
Q ss_pred ceEEEEEcCCCCeEEEEe---CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecC-Ccc
Q 003087 12 KQVSLFISPRGERVAVAA---VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKAN-GEE 87 (849)
Q Consensus 12 ~v~slafSPdG~~LAsas---~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~-g~~ 87 (849)
....|+|+|||++.++.+ +++|.+.|...+ +...............++++ ++++.++.-.+++|.++|.. ++.
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg--~v~~~i~l~~~~fgeGi~~~-g~~lyv~t~~~~~v~viD~~t~~v 98 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTG--KVENIHKMDDSYFGEGLTLL-NEKLYQVVWLKNIGFIYDRRTLSN 98 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTC--CEEEEEECCTTCCEEEEEEE-TTEEEEEETTCSEEEEEETTTTEE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCC--CEEEEEecCCCcceEEEEEe-CCEEEEEEecCCEEEEEECCCCcE
Confidence 357899999986666554 368999997643 44444332222333456665 23444566678999999986 566
Q ss_pred ceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEE
Q 003087 88 ITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTD 167 (849)
Q Consensus 88 ~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~sva 167 (849)
+.++.-.. . .=+++. +|+ ..+++...+++|+.+|..+.+....+. ....+..-...+.+.
T Consensus 99 ~~~i~~g~-~---~g~glt--~Dg-------~~l~vs~gs~~l~viD~~t~~v~~~I~-------Vg~~~~p~~~~nele 158 (266)
T 2iwa_A 99 IKNFTHQM-K---DGWGLA--TDG-------KILYGSDGTSILYEIDPHTFKLIKKHN-------VKYNGHRVIRLNELE 158 (266)
T ss_dssp EEEEECCS-S---SCCEEE--ECS-------SSEEEECSSSEEEEECTTTCCEEEEEE-------CEETTEECCCEEEEE
T ss_pred EEEEECCC-C---CeEEEE--ECC-------CEEEEECCCCeEEEEECCCCcEEEEEE-------ECCCCcccccceeEE
Confidence 66654220 0 012233 222 135555678899999987655432221 000011112378889
Q ss_pred EcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeec--cCCCccccccceEEEccCCCE-E
Q 003087 168 YHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCE--PKGHEVQLAHPKVLISPQGKF-V 244 (849)
Q Consensus 168 fsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~--~~g~~h~~~V~~vafSPDG~~-L 244 (849)
|. ||++.|....++ .|.+=|+.++.-...+ ...++... ..+.........|+|+|||+. +
T Consensus 159 ~~-dg~lyvn~~~~~-------------~V~vID~~tg~V~~~I---~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lf 221 (266)
T 2iwa_A 159 YI-NGEVWANIWQTD-------------CIARISAKDGTLLGWI---LLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIF 221 (266)
T ss_dssp EE-TTEEEEEETTSS-------------EEEEEETTTCCEEEEE---ECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEE
T ss_pred EE-CCEEEEecCCCC-------------eEEEEECCCCcEEEEE---ECCCcccccccccccccCceEEEEEcCCCCEEE
Confidence 99 887655432233 2444444332111111 00011000 000000124568999999875 5
Q ss_pred EEEeCCCcEEEEecCC
Q 003087 245 ATSDTNGCLYIFEMDK 260 (849)
Q Consensus 245 As~s~Dgtv~LWd~~~ 260 (849)
+|+...++|..-++..
T Consensus 222 VTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 222 VTGKLWPKLFEIKLHL 237 (266)
T ss_dssp EEETTCSEEEEEEEEE
T ss_pred EECCCCCeEEEEEEec
Confidence 5555788888777764
No 251
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=97.07 E-value=0.21 Score=60.48 Aligned_cols=256 Identities=9% Similarity=0.037 Sum_probs=148.4
Q ss_pred cceEEEEEcCCCCeEEEEeCCeEEEEecCCCCCcceeeeeec-------CCCCEEEEEECCCCCEEEEEeCCCcEEEEec
Q 003087 11 KKQVSLFISPRGERVAVAAVNQVTILQKDDDYQEPCGIFNCT-------GLGASIYGAWSESHDVLGIVDDTHTVYFFKA 83 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas~~~i~iw~~~~~~~~~~~~~~~~-------~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~ 83 (849)
..|.++...++|++.+...++.+.+++...+ ....+... ....|.++...++|.+.+... + .|.+||.
T Consensus 215 ~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~---~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~-~-Gl~~~~~ 289 (795)
T 4a2l_A 215 KQIQAILQQSPTRIWVATEGAGLFLINPKTK---EIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTF-N-DLNIYHE 289 (795)
T ss_dssp CCEEEEEEEETTEEEEEEBSSCEEEEETTTT---EEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEES-S-CEEEEET
T ss_pred CeeEEEEEcCCCCEEEEECCCCeEEEeCCCC---eEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEeC-C-hhheEcC
Confidence 4688999999999887655556778875432 11122110 135689999999999776554 4 4889998
Q ss_pred CCccceecccccc---c-ccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceecccc
Q 003087 84 NGEEITRFTNKHL---K-VSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQF 159 (849)
Q Consensus 84 ~g~~~~~l~~~~~---~-~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~ 159 (849)
.+.....+..... . ....|.++...+++. +-+++.+|-|..++..++........ .....+ .
T Consensus 290 ~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~--------lWigt~~~Gl~~~~~~~~~~~~~~~~---~~~~~l---~ 355 (795)
T 4a2l_A 290 GTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG--------MWLGTYFGGLNYYHPIRNRFKNIRNI---PYKNSL---S 355 (795)
T ss_dssp TTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC--------EEEEESSSCEEEECGGGGSSEEECCC---TTSSSC---S
T ss_pred CCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC--------EEEEECCCCeEEeCCCcccceEEcCC---CCCCCC---C
Confidence 7655444432110 1 124688887654332 33446777788887654433211100 000011 1
Q ss_pred CCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccC-CCccccccceEEEc
Q 003087 160 PQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPK-GHEVQLAHPKVLIS 238 (849)
Q Consensus 160 ~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~-g~~h~~~V~~vafS 238 (849)
...|.++...++|++.+ |..++ +|..|+..++. +..+.... + ... + .....|.++...
T Consensus 356 ~~~V~~i~~d~~g~lWi-Gt~~~-------------Gl~~~~~~~~~-~~~~~~~~--~---~~~~~-l~~~~v~~i~~d 414 (795)
T 4a2l_A 356 DNVVSCIVEDKDKNLWI-GTNDG-------------GLNLYNPITQR-FTSYTLQE--D---ESARG-IGSNNIKAVYVD 414 (795)
T ss_dssp CSSEEEEEECTTSCEEE-EESSS-------------CEEEECTTTCC-EEEECCC-----------C-CSCSCEEEEEEE
T ss_pred CCeeEEEEECCCCCEEE-EECCC-------------CeEEEcCCCCc-EEEEecCC--C---CcccC-CCCccEEEEEEc
Confidence 23599999999999774 44443 26677655421 11110000 0 000 0 023578999999
Q ss_pred cCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCEEEEEEeCCcEEEEEe
Q 003087 239 PQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNILILARKSSIITMIDV 318 (849)
Q Consensus 239 PDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~la~a~~dgti~lwdl 318 (849)
++|++|-.|..++-|.+++..+++. ..+... . + .-....|.++..-++|.|-+|+. +.|.+++.
T Consensus 415 ~~g~~lWigt~~~Gl~~~d~~~~~~--~~~~~~---~--------~--~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~ 478 (795)
T 4a2l_A 415 EKKSLVYIGTHAGGLSILHRNSGQV--ENFNQR---N--------S--QLVNENVYAILPDGEGNLWLGTL-SALVRFNP 478 (795)
T ss_dssp TTTTEEEEEETTTEEEEEETTTCCE--EEECTT---T--------S--CCSCSCEEEEEECSSSCEEEEES-SCEEEEET
T ss_pred CCCCEEEEEeCcCceeEEeCCCCcE--EEeecC---C--------C--CcCCCeeEEEEECCCCCEEEEec-CceeEEeC
Confidence 9999455566767799999887632 233210 0 0 01124588888877888878776 56888887
Q ss_pred cCCc
Q 003087 319 LSGL 322 (849)
Q Consensus 319 ~~~~ 322 (849)
.+++
T Consensus 479 ~~~~ 482 (795)
T 4a2l_A 479 EQRS 482 (795)
T ss_dssp TTTE
T ss_pred CCCe
Confidence 7654
No 252
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=97.04 E-value=0.23 Score=60.12 Aligned_cols=251 Identities=10% Similarity=0.043 Sum_probs=143.8
Q ss_pred cceEEEEEcCCCCeEEEEeCCeEEEEecCCCCCcceeeeeec--------CCCCEEEEEECCCCCEEEEEeCCCcEEEEe
Q 003087 11 KKQVSLFISPRGERVAVAAVNQVTILQKDDDYQEPCGIFNCT--------GLGASIYGAWSESHDVLGIVDDTHTVYFFK 82 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas~~~i~iw~~~~~~~~~~~~~~~~--------~~~~v~~vafSPDG~~LAs~~~dgtIrlWd 82 (849)
+.|.++...++|++.+...++.+..++...+ ....+... ....|.+++..++|++|-.|..++.|.++|
T Consensus 357 ~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~---~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d 433 (795)
T 4a2l_A 357 NVVSCIVEDKDKNLWIGTNDGGLNLYNPITQ---RFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILH 433 (795)
T ss_dssp SSEEEEEECTTSCEEEEESSSCEEEECTTTC---CEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEE
T ss_pred CeeEEEEECCCCCEEEEECCCCeEEEcCCCC---cEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEe
Confidence 5699999999999776444567888875432 11122110 135689999999999556677767799999
Q ss_pred cCCccceecccccc-cccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCC
Q 003087 83 ANGEEITRFTNKHL-KVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQ 161 (849)
Q Consensus 83 ~~g~~~~~l~~~~~-~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 161 (849)
..++....+..... -....|.++...+++. +.+++.+ -+..|+..++........ ..... ....
T Consensus 434 ~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~--------lwigt~~-Gl~~~~~~~~~~~~~~~~---~~~~~---~~~~ 498 (795)
T 4a2l_A 434 RNSGQVENFNQRNSQLVNENVYAILPDGEGN--------LWLGTLS-ALVRFNPEQRSFTTIEKE---KDGTP---VVSK 498 (795)
T ss_dssp TTTCCEEEECTTTSCCSCSCEEEEEECSSSC--------EEEEESS-CEEEEETTTTEEEECCBC---TTCCB---CCCC
T ss_pred CCCCcEEEeecCCCCcCCCeeEEEEECCCCC--------EEEEecC-ceeEEeCCCCeEEEcccc---ccccc---cCCc
Confidence 87555444432110 1124577777644332 3344554 467787665443221100 00001 1124
Q ss_pred ceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCC
Q 003087 162 NVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQG 241 (849)
Q Consensus 162 ~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG 241 (849)
.|.++...++|++.+.. ..+ |..|+..+.. . .+.... ...+ .+...|.+|...++|
T Consensus 499 ~i~~i~~d~~g~lWigt-~~G--------------l~~~~~~~~~-~-~~~~~~------~~~~-l~~~~i~~i~~d~~g 554 (795)
T 4a2l_A 499 QITTLFRDSHKRLWIGG-EEG--------------LSVFKQEGLD-I-QKASIL------PVSN-VTKLFTNCIYEASNG 554 (795)
T ss_dssp CEEEEEECTTCCEEEEE-SSC--------------EEEEEEETTE-E-EECCCS------CSCG-GGGSCEEEEEECTTS
T ss_pred eEEEEEECCCCCEEEEe-CCc--------------eEEEeCCCCe-E-EEecCC------CCCC-CCCCeeEEEEECCCC
Confidence 69999999999987644 332 6777766531 1 110000 0000 134578899999999
Q ss_pred CEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCEEEEEEeCCcEEEEEecCC
Q 003087 242 KFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNILILARKSSIITMIDVLSG 321 (849)
Q Consensus 242 ~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~la~a~~dgti~lwdl~~~ 321 (849)
++.++.. +-|..||..+.+. ..+... +.|. ...|.++...++|.|-+++ ++.|..++..++
T Consensus 555 ~lWigT~--~Gl~~~d~~~~~~--~~~~~~--------~gl~------~~~i~~i~~d~~g~lWi~t-~~Gl~~~~~~~~ 615 (795)
T 4a2l_A 555 IIWVGTR--EGFYCFNEKDKQI--KRYNTT--------NGLP------NNVVYGILEDSFGRLWLST-NRGISCFNPETE 615 (795)
T ss_dssp CEEEEES--SCEEEEETTTTEE--EEECGG--------GTCS------CSCEEEEEECTTSCEEEEE-TTEEEEEETTTT
T ss_pred CEEEEeC--CCceeECCCCCcE--EEeCCC--------CCCc------hhheEEEEECCCCCEEEEc-CCceEEEcCCCC
Confidence 9876544 3577888876532 233210 0011 1347788877788876666 455667776655
Q ss_pred c
Q 003087 322 L 322 (849)
Q Consensus 322 ~ 322 (849)
+
T Consensus 616 ~ 616 (795)
T 4a2l_A 616 K 616 (795)
T ss_dssp E
T ss_pred c
Confidence 4
No 253
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.00 E-value=0.067 Score=60.15 Aligned_cols=264 Identities=13% Similarity=0.127 Sum_probs=129.8
Q ss_pred cccceEEEEEcC-CCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCC-C----cEEEE
Q 003087 9 KTKKQVSLFISP-RGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDT-H----TVYFF 81 (849)
Q Consensus 9 ~~~~v~slafSP-dG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~d-g----tIrlW 81 (849)
+......|+|+| ++..|-++. .+.|..++.... . +..+.. .......|+|+|+|++|.+++.. + .+.+.
T Consensus 135 ~~~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~--~-v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~ 210 (430)
T 3tc9_A 135 GFGGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKE--Y-VSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYIL 210 (430)
T ss_dssp CCSCCCEEEEETTEEEEEEEEEBTEEEEEEETTTT--E-EEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEE
T ss_pred CCCCCCEEEECCCCCCeEEEEeCCCcEEEEECCCC--E-EEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEE
Confidence 456678999999 455555554 367777776532 1 222221 23456899999999966666542 2 34445
Q ss_pred ecCCccc--eecccccccccccEEEEEecC-CcccccccceeEEEE-eCCCcEEEEEecCCCCcccccccccCCcceecc
Q 003087 82 KANGEEI--TRFTNKHLKVSLPIIGLIAQD-ETDVQRSCLCSFTVF-TSDGFLHQIEISQDPSASISSASASSSGLTLRR 157 (849)
Q Consensus 82 d~~g~~~--~~l~~~~~~~~~~V~~l~fs~-~~~~~~s~~~~~~~~-s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~ 157 (849)
+..|... ..+.. . ....++++.| ++. +++. ..++.|..++...+...... .+.
T Consensus 211 ~~~g~~~~~~~l~~--~---~~p~giavdp~~g~--------lyv~d~~~~~V~~~~~~~~~~~~~~---------~~~- 267 (430)
T 3tc9_A 211 TRESGFKVITELTK--G---QNCNGAETHPINGE--------LYFNSWNAGQVFRYDFTTQETTPLF---------TIQ- 267 (430)
T ss_dssp EGGGTSCSEEEEEE--C---SSCCCEEECTTTCC--------EEEEETTTTEEEEEETTTTEEEEEE---------ECS-
T ss_pred eCCCceeeeeeecc--C---CCceEEEEeCCCCE--------EEEEECCCCEEEEEECCCCcEEEEE---------EcC-
Confidence 5555432 11110 0 1233566655 332 3332 35677777776543321111 111
Q ss_pred ccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCc-Cccc--ceeccc--cceeec--cCCCcccc
Q 003087 158 QFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNL-ELEQ--LYTTQI--EGLYCE--PKGHEVQL 230 (849)
Q Consensus 158 ~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~-~~~~--l~~~~~--~~~~~~--~~g~~h~~ 230 (849)
. ...-+.++|+|+|+.|.++.... ..|..++.++.. .+.. .+.... .|.-.. ... ...
T Consensus 268 ~-~~~P~gia~~pdG~~lyv~d~~~------------~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a--~~~ 332 (430)
T 3tc9_A 268 D-SGWEFHIQFHPSGNYAYIVVVNQ------------HYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKA--RMH 332 (430)
T ss_dssp S-SSCCEEEEECTTSSEEEEEETTT------------TEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGC--BBS
T ss_pred C-CCcceeEEEcCCCCEEEEEECCC------------CEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcce--EeC
Confidence 1 12357899999999766665443 136666665421 0100 011100 000000 000 001
Q ss_pred ccc-eEEEc--------cCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccc-cc-cCCCCCCCCCCcEEEEEe
Q 003087 231 AHP-KVLIS--------PQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVA-DS-LFDGRTKPISDITDFAWW 299 (849)
Q Consensus 231 ~V~-~vafS--------PDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~-~~-l~~~~~~~~~~v~~vaws 299 (849)
.-. .+++. ++|.+.++=...+.|+.++..+ . +..+.........+. +- +.. ...+..+..|++.
T Consensus 333 ~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~~G-~--v~~~~g~g~~~~~G~~dG~~~~--~~~~~~P~giavd 407 (430)
T 3tc9_A 333 APRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTPQG-R--VTTFAGRGSNGTSGYNDGDLRQ--EARFNHPEGIVYD 407 (430)
T ss_dssp SEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECTTS-E--EEEEEECCTTSSSSCBCEETTT--TCBCSSEEEEEEE
T ss_pred CCcceEEEccccccccCCCCeEEEEECCCcEEEEECCCC-c--EEEEEeCCCCCCCcccCCCchh--hcEeCCCcEEEEE
Confidence 111 35553 4577777666678888888443 2 223221100000000 00 000 1123568899999
Q ss_pred c-CCEEEEEE-eCCcEEEEEec
Q 003087 300 S-DNILILAR-KSSIITMIDVL 319 (849)
Q Consensus 300 ~-D~~la~a~-~dgti~lwdl~ 319 (849)
| ++.|.++. .++.|+..++.
T Consensus 408 ~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 408 EERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp TTTTEEEEEEGGGTEEEEEEEC
T ss_pred CCCCEEEEEECCCCeEEEEccC
Confidence 8 58887775 45678777653
No 254
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.99 E-value=0.13 Score=55.98 Aligned_cols=75 Identities=9% Similarity=0.061 Sum_probs=44.1
Q ss_pred ccceEEEEEcCCCC-eEEEEeCCeEEEEecCCCCCcceeeee---ecCCCCEEEEEECCC----CCEEEEEeC-------
Q 003087 10 TKKQVSLFISPRGE-RVAVAAVNQVTILQKDDDYQEPCGIFN---CTGLGASIYGAWSES----HDVLGIVDD------- 74 (849)
Q Consensus 10 ~~~v~slafSPdG~-~LAsas~~~i~iw~~~~~~~~~~~~~~---~~~~~~v~~vafSPD----G~~LAs~~~------- 74 (849)
....+.|+|.|||+ ++++-..+.|.+++.......++.... ..+......|+|+|| |.+.++-..
T Consensus 17 l~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 17 LDHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp ESSEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CCCcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 35678999999999 776655788888874321111111110 112345689999996 555555332
Q ss_pred CCcEEEEecC
Q 003087 75 THTVYFFKAN 84 (849)
Q Consensus 75 dgtIrlWd~~ 84 (849)
...|..++.+
T Consensus 97 ~~~v~r~~~~ 106 (353)
T 2g8s_A 97 GTAVGYGRLS 106 (353)
T ss_dssp EEEEEEEEEC
T ss_pred eeEEEEEEEC
Confidence 2245555654
No 255
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=96.90 E-value=0.11 Score=58.62 Aligned_cols=266 Identities=9% Similarity=0.057 Sum_probs=127.5
Q ss_pred cccceEEEEEcCC---CCeEEEEeCCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCC---C-cEEEE
Q 003087 9 KTKKQVSLFISPR---GERVAVAAVNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDT---H-TVYFF 81 (849)
Q Consensus 9 ~~~~v~slafSPd---G~~LAsas~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~d---g-tIrlW 81 (849)
+......|+|+|+ |.+.++-..+.|+.++..++ . ...+. ........|+|+|||+++++-... . .+...
T Consensus 137 ~~~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g--~-v~~~~-~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~ 212 (433)
T 4hw6_A 137 AFDNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQ--Y-VDIKT-TNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLF 212 (433)
T ss_dssp CCSCCCEEEECTTTTTCEEEEECBTSCEEEEETTTT--E-EEEEC-CCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEE
T ss_pred ccCCCceEEEccccCCCEEEEEeCCCCEEEEECCCC--E-EEEee-cCCCCccEEEECCCCCEEEEcCCCCcccceEEEE
Confidence 4567789999995 55444333477888886432 1 11221 123456899999999955444321 1 12223
Q ss_pred ecCCccce--ecccccccccccEEEEEecC-CcccccccceeEEEEe-CCCcEEEEEecCCCC-cccccccccCCcceec
Q 003087 82 KANGEEIT--RFTNKHLKVSLPIIGLIAQD-ETDVQRSCLCSFTVFT-SDGFLHQIEISQDPS-ASISSASASSSGLTLR 156 (849)
Q Consensus 82 d~~g~~~~--~l~~~~~~~~~~V~~l~fs~-~~~~~~s~~~~~~~~s-~Dg~v~lw~~~~~~~-~~~~~~~~~~~~~~l~ 156 (849)
+..+.... .+. .. ..-.++++.+ ++ .+++.. .++.|+.++..++.. ..... ..
T Consensus 213 ~~~~~~~~~~~~~--~~---~~P~giavd~~~G--------~lyv~d~~~~~V~~~d~~~g~~~~~~~~---------~~ 270 (433)
T 4hw6_A 213 TRASGFTERLSLC--NA---RGAKTCAVHPQNG--------KIYYTRYHHAMISSYDPATGTLTEEEVM---------MD 270 (433)
T ss_dssp CGGGTTCCEEEEE--EC---SSBCCCEECTTTC--------CEEECBTTCSEEEEECTTTCCEEEEEEE---------CS
T ss_pred ECCCCeecccccc--cc---CCCCEEEEeCCCC--------eEEEEECCCCEEEEEECCCCeEEEEEec---------cC
Confidence 33222110 000 00 0112344444 22 233332 456677776654432 11110 00
Q ss_pred cccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCc-Cccc--ceecc--ccceeeccCCCccccc
Q 003087 157 RQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNL-ELEQ--LYTTQ--IEGLYCEPKGHEVQLA 231 (849)
Q Consensus 157 ~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~-~~~~--l~~~~--~~~~~~~~~g~~h~~~ 231 (849)
. ...-..++|+|+|+.|.++.... ..|..++.+... .+.. .+..+ ..|.............
T Consensus 271 -~-~~~~~~ia~dpdG~~LYvad~~~------------~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~ 336 (433)
T 4hw6_A 271 -T-KGSNFHIVWHPTGDWAYIIYNGK------------HCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWG 336 (433)
T ss_dssp -C-CSSCEEEEECTTSSEEEEEETTT------------TEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSS
T ss_pred -C-CCCcccEEEeCCCCEEEEEeCCC------------CEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcC
Confidence 1 11235799999999776665442 125454444311 0110 11111 0010000000000122
Q ss_pred cceEEE---------ccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccc-cc-cCCCCCCCCCCcEEEEEe-
Q 003087 232 HPKVLI---------SPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVA-DS-LFDGRTKPISDITDFAWW- 299 (849)
Q Consensus 232 V~~vaf---------SPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~-~~-l~~~~~~~~~~v~~vaws- 299 (849)
-..|+| .++|.+.++-...+.|+.++..+. +..+.........++ +- +.. ...+..+..|++.
T Consensus 337 P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~~G~---v~t~~G~g~~~~~G~~dG~~~~--~~~~~~P~giavd~ 411 (433)
T 4hw6_A 337 PNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTPEGR---VTTYAGRGNSREWGYVDGELRS--QALFNHPTSIAYDM 411 (433)
T ss_dssp EEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECTTSE---EEEEECCCTTCSSCCBCEETTT--TCBCSSEEEEEEET
T ss_pred CccEEEEccccccccCCCCcEEEEECCCCEEEEECCCCC---EEEEEeCCCCCccccCCCcccc--ccEeCCCcEEEEEC
Confidence 346999 788888887777889999986432 333321110000000 00 000 1124567899999
Q ss_pred cCCEEEEEE-eCCcEEEEEec
Q 003087 300 SDNILILAR-KSSIITMIDVL 319 (849)
Q Consensus 300 ~D~~la~a~-~dgti~lwdl~ 319 (849)
++|.|.++. .++.|+..++.
T Consensus 412 ~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 412 KRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp TTTEEEEEEGGGTEEEEEEEC
T ss_pred CCCEEEEEeCCCCEEEEEecC
Confidence 788887775 45678877753
No 256
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=96.87 E-value=0.17 Score=61.05 Aligned_cols=248 Identities=8% Similarity=0.021 Sum_probs=139.1
Q ss_pred cceEEEEEcCCCCeEEEEeCCeEEEEecCCCCCcceeeeee--c-CCCCEEEEEECCCCCEEEEEeCCCcEEEEecCCcc
Q 003087 11 KKQVSLFISPRGERVAVAAVNQVTILQKDDDYQEPCGIFNC--T-GLGASIYGAWSESHDVLGIVDDTHTVYFFKANGEE 87 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas~~~i~iw~~~~~~~~~~~~~~~--~-~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~~ 87 (849)
+.|.+++..++|++.+...++.+.+++.... ....+.. . ....|.+++..++|++.+ |..++.|..++..+..
T Consensus 363 ~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~---~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~ 438 (781)
T 3v9f_A 363 KVVSSVCDDGQGKLWIGTDGGGINVFENGKR---VAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKK 438 (781)
T ss_dssp SCEEEEEECTTSCEEEEEBSSCEEEEETTEE---EEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCE
T ss_pred cceEEEEEcCCCCEEEEeCCCcEEEEECCCC---eEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCc
Confidence 5699999999998775443566777775421 0111110 1 145789999999999777 5555668888886544
Q ss_pred ceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEE
Q 003087 88 ITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTD 167 (849)
Q Consensus 88 ~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~sva 167 (849)
...+..... ....|.++...+++. +.+++. +-|..++..++....... ... .+.....|.++.
T Consensus 439 ~~~~~~~~~-~~~~v~~i~~d~~g~--------lwigt~-~Gl~~~~~~~~~~~~~~~----~~~---~~~~~~~i~~i~ 501 (781)
T 3v9f_A 439 FQIIELEKN-ELLDVRVFYEDKNKK--------IWIGTH-AGVFVIDLASKKVIHHYD----TSN---SQLLENFVRSIA 501 (781)
T ss_dssp EEECCSTTT-CCCCEEEEEECTTSE--------EEEEET-TEEEEEESSSSSCCEEEC----TTT---SSCSCSCEEEEE
T ss_pred EEEeccCCC-CCCeEEEEEECCCCC--------EEEEEC-CceEEEeCCCCeEEeccc----Ccc---cccccceeEEEE
Confidence 444432100 124577777544332 334455 447778876554422211 000 001124699999
Q ss_pred EcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEE
Q 003087 168 YHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATS 247 (849)
Q Consensus 168 fsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~ 247 (849)
..++|++.+. ...+ | |..++..+.. ...+. ...+ .....|.++...++|++.++.
T Consensus 502 ~d~~g~lWig-t~~~----------G---l~~~~~~~~~-~~~~~---------~~~~-l~~~~i~~i~~d~~g~lWi~T 556 (781)
T 3v9f_A 502 QDSEGRFWIG-TFGG----------G---VGIYTPDMQL-VRKFN---------QYEG-FCSNTINQIYRSSKGQMWLAT 556 (781)
T ss_dssp ECTTCCEEEE-ESSS----------C---EEEECTTCCE-EEEEC---------TTTT-CSCSCEEEEEECTTSCEEEEE
T ss_pred EcCCCCEEEE-EcCC----------C---EEEEeCCCCe-EEEcc---------CCCC-CCCCeeEEEEECCCCCEEEEE
Confidence 9999998753 3322 2 5555543321 11110 0011 023578899999999987765
Q ss_pred eCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCEEEEEEeCCcEEEEEecCCc
Q 003087 248 DTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNILILARKSSIITMIDVLSGL 322 (849)
Q Consensus 248 s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~la~a~~dgti~lwdl~~~~ 322 (849)
. +|-|..||..+.+. ..+... +.|. ...|.++...++|.|-+++.+| |..++..+++
T Consensus 557 ~-~Glv~~~d~~~~~~--~~~~~~--------~gl~------~~~i~~i~~d~~g~lW~~t~~G-l~~~~~~~~~ 613 (781)
T 3v9f_A 557 G-EGLVCFPSARNFDY--QVFQRK--------EGLP------NTHIRAISEDKNGNIWASTNTG-ISCYITSKKC 613 (781)
T ss_dssp T-TEEEEESCTTTCCC--EEECGG--------GTCS------CCCCCEEEECSSSCEEEECSSC-EEEEETTTTE
T ss_pred C-CCceEEECCCCCcE--EEcccc--------CCCC------CceEEEEEECCCCCEEEEcCCc-eEEEECCCCc
Confidence 5 77658888876532 233210 0111 1236677777788877776555 6666655443
No 257
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=96.83 E-value=0.2 Score=52.17 Aligned_cols=215 Identities=10% Similarity=0.094 Sum_probs=116.0
Q ss_pred CCCEEEEEECCCCCEEE-EEeCCCcEEEEecCCccceecccccccccccEEEEEecCCcccccccceeEEEEe-CCCcEE
Q 003087 54 LGASIYGAWSESHDVLG-IVDDTHTVYFFKANGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFT-SDGFLH 131 (849)
Q Consensus 54 ~~~v~~vafSPDG~~LA-s~~~dgtIrlWd~~g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s-~Dg~v~ 131 (849)
...+..++|.||++.|. +.+.++.|...|.+|+.+.++.-. + ....-+|++.+++. +++.. .++.+.
T Consensus 26 ~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g~v~~~i~l~--g-~~D~EGIa~~~~g~--------~~vs~E~~~~l~ 94 (255)
T 3qqz_A 26 TNNISSLTWSAQSNTLFSTINKPAAIVEMTTNGDLIRTIPLD--F-VKDLETIEYIGDNQ--------FVISDERDYAIY 94 (255)
T ss_dssp CSCEEEEEEETTTTEEEEEEETTEEEEEEETTCCEEEEEECS--S-CSSEEEEEECSTTE--------EEEEETTTTEEE
T ss_pred ccCcceeEEeCCCCEEEEEECCCCeEEEEeCCCCEEEEEecC--C-CCChHHeEEeCCCE--------EEEEECCCCcEE
Confidence 45789999999876555 578889999999998876665321 1 12456777654332 32222 445666
Q ss_pred EEEecCCCCcccccccccCCcceec-cccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCccc
Q 003087 132 QIEISQDPSASISSASASSSGLTLR-RQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQ 210 (849)
Q Consensus 132 lw~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~ 210 (849)
++++.......... ...+.+. .....+.-+++|+|+++.|.++...+. ..+|.+.+-.....
T Consensus 95 ~~~v~~~~~i~~~~----~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p-------------~~i~~~~g~~~~~~ 157 (255)
T 3qqz_A 95 VISLTPNSEVKILK----KIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNP-------------IEVYKVNGLLSSNE 157 (255)
T ss_dssp EEEECTTCCEEEEE----EEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSS-------------EEEEEEESTTCSSC
T ss_pred EEEcCCCCeeeeee----eeccccccccccCCcceEEEeCCCCEEEEEECcCC-------------ceEEEEcccccCCc
Confidence 66665433211101 0000111 112346899999999977766654431 45666653211111
Q ss_pred c--e-eccccceeeccCCCccccccceEEEccCCC-EEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCC
Q 003087 211 L--Y-TTQIEGLYCEPKGHEVQLAHPKVLISPQGK-FVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGR 286 (849)
Q Consensus 211 l--~-~~~~~~~~~~~~g~~h~~~V~~vafSPDG~-~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~ 286 (849)
+ . .....+.+ +-..+.+++|.|.-. +++..+.++.|-..|..+. .+..+.+.. +.+.+.
T Consensus 158 l~i~~~~~~~~~~-------~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~--~~~~~~L~~-----g~~~l~--- 220 (255)
T 3qqz_A 158 LHISKDKALQRQF-------TLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGE--VIGEMSLTK-----GSRGLS--- 220 (255)
T ss_dssp CEEEECHHHHHTC-------CSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECST-----TGGGCS---
T ss_pred eeeecchhhcccc-------ccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCC--EEEEEEcCC-----ccCCcc---
Confidence 1 0 00000000 122456899988654 4555566777888888765 233333211 111111
Q ss_pred CCCCCCcEEEEEecCCEEEEEEeCCcEE
Q 003087 287 TKPISDITDFAWWSDNILILARKSSIIT 314 (849)
Q Consensus 287 ~~~~~~v~~vaws~D~~la~a~~dgti~ 314 (849)
......-.|+|-++|.|-+++.-+-+.
T Consensus 221 -~~~~qpEGia~d~~G~lyIvsE~n~~y 247 (255)
T 3qqz_A 221 -HNIKQAEGVAMDASGNIYIVSEPNRFY 247 (255)
T ss_dssp -SCCCSEEEEEECTTCCEEEEETTTEEE
T ss_pred -cccCCCCeeEECCCCCEEEEcCCceEE
Confidence 112345779999999887777655333
No 258
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=96.77 E-value=0.16 Score=56.09 Aligned_cols=234 Identities=10% Similarity=0.036 Sum_probs=119.9
Q ss_pred EEEcCCCCeEEEEeCCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEE-EEeCCCcEEEEecCCccceecccc
Q 003087 16 LFISPRGERVAVAAVNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLG-IVDDTHTVYFFKANGEEITRFTNK 94 (849)
Q Consensus 16 lafSPdG~~LAsas~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LA-s~~~dgtIrlWd~~g~~~~~l~~~ 94 (849)
.+..+++ +|..+..+.|+..+.... . .... ..+......++|.|.++.|- +-...+.|+.++..|.....+...
T Consensus 82 ~~~~~~~-~l~~~~~~~I~~i~~~~~--~-~~~~-~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~ 156 (386)
T 3v65_B 82 KALGPEP-VLLFANRIDIRQVLPHRS--E-YTLL-LNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST 156 (386)
T ss_dssp EECSSCC-EEEEECBSCEEEECTTSC--C-CEEE-ECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECS
T ss_pred CCccccc-eeEeecCccceeeccCCC--c-EEEE-ecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeC
Confidence 3444533 344444566776665432 1 1111 12345678999998655555 445678899999987654443221
Q ss_pred cccccccEEEEEecC-CcccccccceeEEEE-eCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEcCCC
Q 003087 95 HLKVSLPIIGLIAQD-ETDVQRSCLCSFTVF-TSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPEL 172 (849)
Q Consensus 95 ~~~~~~~V~~l~fs~-~~~~~~s~~~~~~~~-s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg 172 (849)
.. ....++++.+ ++. ++.. ...+.|...+..... ...+ +.+.. ...+.++++|++
T Consensus 157 ~~---~~p~glavd~~~g~--------lY~~d~~~~~I~~~~~dg~~-~~~l----------~~~~l-~~P~giavdp~~ 213 (386)
T 3v65_B 157 GL---ESPGGLAVDWVHDK--------LYWTDSGTSRIEVANLDGAH-RKVL----------LWQSL-EKPRAIALHPME 213 (386)
T ss_dssp SC---SCCCCEEEETTTTE--------EEEEETTTTEEEECBTTSCS-CEEE----------ECSSC-SCEEEEEEETTT
T ss_pred CC---CCccEEEEEeCCCe--------EEEEcCCCCeEEEEeCCCCc-eEEe----------ecCCC-CCCcEEEEEcCC
Confidence 11 1123566643 221 2221 334555555443211 1110 11111 236899999987
Q ss_pred ceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEEeC-CC
Q 003087 173 SLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDT-NG 251 (849)
Q Consensus 173 ~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~-Dg 251 (849)
..|..+..... + .|...++++.. ...+... ....-..|+|+|+++.|..++. .+
T Consensus 214 g~ly~td~~~~---------~--~I~r~~~dG~~-~~~~~~~-------------~~~~PnGlavd~~~~~lY~aD~~~~ 268 (386)
T 3v65_B 214 GTIYWTDWGNT---------P--RIEASSMDGSG-RRIIADT-------------HLFWPNGLTIDYAGRRMYWVDAKHH 268 (386)
T ss_dssp TEEEEEECSSS---------C--EEEEEETTSCS-CEEEECS-------------SCSCEEEEEEEGGGTEEEEEETTTT
T ss_pred CeEEEeccCCC---------C--EEEEEeCCCCC-cEEEEEC-------------CCCCeeeEEEeCCCCEEEEEECCCC
Confidence 77766543321 1 24333333321 1111110 0123457999998887777764 56
Q ss_pred cEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCEEEEE-EeCCcEEEEEecCCc
Q 003087 252 CLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNILILA-RKSSIITMIDVLSGL 322 (849)
Q Consensus 252 tv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~la~a-~~dgti~lwdl~~~~ 322 (849)
.|..+++++... ..+.. .....+..++. .++.+..+ ..++.|..++..+|+
T Consensus 269 ~I~~~d~dG~~~--~~~~~-----------------~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~ 320 (386)
T 3v65_B 269 VIERANLDGSHR--KAVIS-----------------QGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGK 320 (386)
T ss_dssp EEEEECTTSCSC--EEEEC-----------------SSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCC
T ss_pred EEEEEeCCCCee--EEEEE-----------------CCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCc
Confidence 788888876422 12210 01234567777 44555444 456778888866665
No 259
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=96.75 E-value=0.093 Score=62.21 Aligned_cols=73 Identities=5% Similarity=-0.005 Sum_probs=46.7
Q ss_pred EEEEEcC-CCCeEEEEeC-C-----------eEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeC-CCcEE
Q 003087 14 VSLFISP-RGERVAVAAV-N-----------QVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDD-THTVY 79 (849)
Q Consensus 14 ~slafSP-dG~~LAsas~-~-----------~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~-dgtIr 79 (849)
.+.++.| +|++++.|+. + .+.+||...+.-..+............++++.+||++++.|+. +++++
T Consensus 189 ~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~ 268 (656)
T 1k3i_A 189 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTS 268 (656)
T ss_dssp SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEE
T ss_pred eeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceE
Confidence 3678888 9999998862 1 4677876543211121111111122246899999999999984 56899
Q ss_pred EEecCCc
Q 003087 80 FFKANGE 86 (849)
Q Consensus 80 lWd~~g~ 86 (849)
+||....
T Consensus 269 ~yd~~t~ 275 (656)
T 1k3i_A 269 LYDSSSD 275 (656)
T ss_dssp EEEGGGT
T ss_pred EecCcCC
Confidence 9998644
No 260
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=96.62 E-value=0.42 Score=57.58 Aligned_cols=249 Identities=9% Similarity=-0.007 Sum_probs=141.2
Q ss_pred cceEEEEEcCCCCeEEEEeCCeEEEEecCCCCCcceeeeee-------c--CCCCEEEEEECCCCCEEEEEeCCCcEEEE
Q 003087 11 KKQVSLFISPRGERVAVAAVNQVTILQKDDDYQEPCGIFNC-------T--GLGASIYGAWSESHDVLGIVDDTHTVYFF 81 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas~~~i~iw~~~~~~~~~~~~~~~-------~--~~~~v~~vafSPDG~~LAs~~~dgtIrlW 81 (849)
+.|.++...++|.+-+...++.|..++.... ....+.. . ....|.+++..++|++.+. ..++.|..+
T Consensus 313 ~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWig-t~~~Gl~~~ 388 (781)
T 3v9f_A 313 ASARYIFQDSFNNIWIGTWGGGINFISNAPP---TFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIG-TDGGGINVF 388 (781)
T ss_dssp SCEEEEEECSSCCEEEEEBSSCEEEECSSCC---SCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEE-EBSSCEEEE
T ss_pred CeEEEEEEeCCCCEEEEecCCeEEEeCCCCC---cceeeccCccccccCCCCCcceEEEEEcCCCCEEEE-eCCCcEEEE
Confidence 5799999999998775444677777775432 1111210 1 1356899999999987654 444558888
Q ss_pred ecCCccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCC
Q 003087 82 KANGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQ 161 (849)
Q Consensus 82 d~~g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 161 (849)
+..+.....+..........|.++...+++ .+-+++.++-+..++..++....... .+....
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g--------~lWigt~~~Gl~~~~~~~~~~~~~~~----------~~~~~~ 450 (781)
T 3v9f_A 389 ENGKRVAIYNKENRELLSNSVLCSLKDSEG--------NLWFGTYLGNISYYNTRLKKFQIIEL----------EKNELL 450 (781)
T ss_dssp ETTEEEEECC-----CCCSBEEEEEECTTS--------CEEEEETTEEEEEECSSSCEEEECCS----------TTTCCC
T ss_pred ECCCCeEEEccCCCCCCCcceEEEEECCCC--------CEEEEeccCCEEEEcCCCCcEEEecc----------CCCCCC
Confidence 886544333321111112457777754332 23344666667777765544321100 011124
Q ss_pred ceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCC
Q 003087 162 NVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQG 241 (849)
Q Consensus 162 ~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG 241 (849)
.|.++...++|++.+. ...+ |..++..+.. +..+.... .... ....|.++...++|
T Consensus 451 ~v~~i~~d~~g~lwig-t~~G--------------l~~~~~~~~~-~~~~~~~~------~~~~--~~~~i~~i~~d~~g 506 (781)
T 3v9f_A 451 DVRVFYEDKNKKIWIG-THAG--------------VFVIDLASKK-VIHHYDTS------NSQL--LENFVRSIAQDSEG 506 (781)
T ss_dssp CEEEEEECTTSEEEEE-ETTE--------------EEEEESSSSS-CCEEECTT------TSSC--SCSCEEEEEECTTC
T ss_pred eEEEEEECCCCCEEEE-ECCc--------------eEEEeCCCCe-EEecccCc------cccc--ccceeEEEEEcCCC
Confidence 6999999999997753 3332 6666655431 11111000 0000 13578899999999
Q ss_pred CEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCEEEEEEeCCcEEEEEecCC
Q 003087 242 KFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNILILARKSSIITMIDVLSG 321 (849)
Q Consensus 242 ~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~la~a~~dgti~lwdl~~~ 321 (849)
++.+.....| |..++..+.+ +..+.. .+.+ ....|.++...++|.|-+++.+|-|..+|..++
T Consensus 507 ~lWigt~~~G-l~~~~~~~~~--~~~~~~--------~~~l------~~~~i~~i~~d~~g~lWi~T~~Glv~~~d~~~~ 569 (781)
T 3v9f_A 507 RFWIGTFGGG-VGIYTPDMQL--VRKFNQ--------YEGF------CSNTINQIYRSSKGQMWLATGEGLVCFPSARNF 569 (781)
T ss_dssp CEEEEESSSC-EEEECTTCCE--EEEECT--------TTTC------SCSCEEEEEECTTSCEEEEETTEEEEESCTTTC
T ss_pred CEEEEEcCCC-EEEEeCCCCe--EEEccC--------CCCC------CCCeeEEEEECCCCCEEEEECCCceEEECCCCC
Confidence 9887544345 6678876652 223321 0001 124578888878888877776665477877665
Q ss_pred c
Q 003087 322 L 322 (849)
Q Consensus 322 ~ 322 (849)
+
T Consensus 570 ~ 570 (781)
T 3v9f_A 570 D 570 (781)
T ss_dssp C
T ss_pred c
Confidence 4
No 261
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=96.61 E-value=0.44 Score=52.83 Aligned_cols=231 Identities=9% Similarity=-0.018 Sum_probs=120.2
Q ss_pred eEEEEeCCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEE-eCCCcEEEEecCCcc----ceecccccccc
Q 003087 24 RVAVAAVNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIV-DDTHTVYFFKANGEE----ITRFTNKHLKV 98 (849)
Q Consensus 24 ~LAsas~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~-~~dgtIrlWd~~g~~----~~~l~~~~~~~ 98 (849)
+|..+..+.|+..+.... ... .. ..+...+..|+|+|.++.|-.+ ...+.|+.++++|.. ...+.....
T Consensus 85 ~ll~~~~~~I~~i~l~~~--~~~-~~-~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~-- 158 (400)
T 3p5b_L 85 YLFFTNRHEVRKMTLDRS--EYT-SL-IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI-- 158 (400)
T ss_dssp EEEEEETTEEEEECTTSC--SCE-EE-ECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSC--
T ss_pred eeEEeccceeEEEccCCc--cee-Ee-ccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCC--
Confidence 555556677877776532 111 11 1234567899999966666555 456889999988632 222221111
Q ss_pred cccEEEEEecC-CcccccccceeEEEE-eCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEcCCCceEE
Q 003087 99 SLPIIGLIAQD-ETDVQRSCLCSFTVF-TSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLS 176 (849)
Q Consensus 99 ~~~V~~l~fs~-~~~~~~s~~~~~~~~-s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLa 176 (849)
....+|++.+ .+. ++.. ...+.|.+.++........ +.... .....++++|.+..|.
T Consensus 159 -~~p~glavD~~~~~--------lY~~d~~~~~I~~~~~~g~~~~~l-----------~~~~~-~~P~~iavdp~~g~ly 217 (400)
T 3p5b_L 159 -QAPDGLAVDWIHSN--------IYWTDSVLGTVSVADTKGVKRKTL-----------FRENG-SKPRAIVVDPVHGFMY 217 (400)
T ss_dssp -SCEEEEEEETTTTE--------EEEEETTTTEEEEECTTTCSEEEE-----------EECSS-CCEEEEEEETTTTEEE
T ss_pred -CCcccEEEEecCCc--------eEEEECCCCeEEEEeCCCCceEEE-----------EeCCC-CCcceEEEecccCeEE
Confidence 2345677654 222 2222 3456666665542211111 11111 2368999999776666
Q ss_pred EEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEEeC-CCcEEE
Q 003087 177 VVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDT-NGCLYI 255 (849)
Q Consensus 177 s~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~-Dgtv~L 255 (849)
.+..... + .|...++++.. ...+... ....-..|+|+|+++.|..++. .++|..
T Consensus 218 ~td~~~~---------~--~I~~~~~dG~~-~~~~~~~-------------~l~~P~glavd~~~~~lY~aD~~~~~I~~ 272 (400)
T 3p5b_L 218 WTDWGTP---------A--KIKKGGLNGVD-IYSLVTE-------------NIQWPNGITLDLLSGRLYWVDSKLHSISS 272 (400)
T ss_dssp EEECSSS---------C--CEEEEETTSCS-CEEEECS-------------SCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred EEeCCCC---------C--EEEEEeCCCCc-cEEEEEC-------------CCCceEEEEEEeCCCEEEEEECCCCEEEE
Confidence 5543210 1 14444444421 1111110 0124457999999988888865 578888
Q ss_pred EecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCEEEEEEeCCcEEEEEecCCcc
Q 003087 256 FEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNILILARKSSIITMIDVLSGLK 323 (849)
Q Consensus 256 Wd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~la~a~~dgti~lwdl~~~~~ 323 (849)
.++++... ..+... ......+..++...+..+.+....+.|..+|..+|+.
T Consensus 273 ~d~dG~~~--~~~~~~---------------~~~l~~P~gl~v~~~~lywtd~~~~~V~~~~~~~G~~ 323 (400)
T 3p5b_L 273 IDVNGGNR--KTILED---------------EKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSD 323 (400)
T ss_dssp EETTSCCC--EEEEEC---------------SSTTSSEEEEEEETTEEEEEESSSCSEEEEESSSCCC
T ss_pred EeCCCCcc--EEEEeC---------------CCCCCCCEEEEEeCCEEEEecCCCCeEEEEEcCCCCc
Confidence 88876532 232210 0122345667763333334445667888888777753
No 262
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=96.60 E-value=0.54 Score=50.06 Aligned_cols=229 Identities=8% Similarity=-0.024 Sum_probs=118.5
Q ss_pred eEEEEeCCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEE-eCCCcEEEEecCC----ccceecccccccc
Q 003087 24 RVAVAAVNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIV-DDTHTVYFFKANG----EEITRFTNKHLKV 98 (849)
Q Consensus 24 ~LAsas~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~-~~dgtIrlWd~~g----~~~~~l~~~~~~~ 98 (849)
+|..+..+.|+..+.... ...... ........++|+|+++.|-.+ ..++.|+.++..| .....+.....
T Consensus 3 ~ll~~~~~~I~~i~~~~~--~~~~~~--~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~-- 76 (316)
T 1ijq_A 3 YLFFTNRHEVRKMTLDRS--EYTSLI--PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI-- 76 (316)
T ss_dssp EEEEECBSSEEEEETTSC--CCEEEE--CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSC--
T ss_pred EEEEECCCeEEEEECCCc--ceEehh--cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCC--
Confidence 355555677877776542 111111 123457899999976655544 4568999999887 33222211111
Q ss_pred cccEEEEEecC-CcccccccceeEEEE-eCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEcCCCceEE
Q 003087 99 SLPIIGLIAQD-ETDVQRSCLCSFTVF-TSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLS 176 (849)
Q Consensus 99 ~~~V~~l~fs~-~~~~~~s~~~~~~~~-s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLa 176 (849)
....+|++.+ ++. ++.. ..++.|...+...... ..+ +.... .....++++|++..|.
T Consensus 77 -~~p~glavd~~~~~--------ly~~d~~~~~I~~~~~~g~~~-~~~----------~~~~~-~~P~~iavdp~~g~ly 135 (316)
T 1ijq_A 77 -QAPDGLAVDWIHSN--------IYWTDSVLGTVSVADTKGVKR-KTL----------FRENG-SKPRAIVVDPVHGFMY 135 (316)
T ss_dssp -SCCCEEEEETTTTE--------EEEEETTTTEEEEEETTSSSE-EEE----------EECTT-CCEEEEEEETTTTEEE
T ss_pred -CCcCEEEEeecCCe--------EEEEECCCCEEEEEeCCCCce-EEE----------EECCC-CCcceEEeCCCCCEEE
Confidence 1234666643 221 2222 3566777776542211 110 01111 2368999999766665
Q ss_pred EEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEEeC-CCcEEE
Q 003087 177 VVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDT-NGCLYI 255 (849)
Q Consensus 177 s~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~-Dgtv~L 255 (849)
.+..... + .|...++++.. ...+... ....-..|+|+|+++.|..++. .+.|..
T Consensus 136 ~~d~~~~---------~--~I~~~~~dG~~-~~~~~~~-------------~~~~P~gla~d~~~~~lY~~D~~~~~I~~ 190 (316)
T 1ijq_A 136 WTDWGTP---------A--KIKKGGLNGVD-IYSLVTE-------------NIQWPNGITLDLLSGRLYWVDSKLHSISS 190 (316)
T ss_dssp EEECSSS---------C--EEEEEETTSCC-EEEEECS-------------SCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred EEccCCC---------C--eEEEEcCCCCC-eEEEEEC-------------CCCCceEEEEeccCCEEEEEECCCCeEEE
Confidence 5543310 1 24333444321 1111110 0123457999999888877764 568999
Q ss_pred EecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCEEEEE-EeCCcEEEEEecCCc
Q 003087 256 FEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNILILA-RKSSIITMIDVLSGL 322 (849)
Q Consensus 256 Wd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~la~a-~~dgti~lwdl~~~~ 322 (849)
.++++... ..+... ......+..++.. ++.+..+ ..++.|..++..+++
T Consensus 191 ~d~dg~~~--~~~~~~---------------~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 191 IDVNGGNR--KTILED---------------EKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGS 240 (316)
T ss_dssp EETTSCSC--EEEEEC---------------TTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCC
T ss_pred EecCCCce--EEEeec---------------CCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCc
Confidence 99886422 232210 0112345677774 4555544 456788888876665
No 263
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=96.60 E-value=0.65 Score=50.33 Aligned_cols=236 Identities=9% Similarity=0.034 Sum_probs=121.7
Q ss_pred EEEEcCCCCeEEEEeCCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEE-eCCCcEEEEecCCccceeccc
Q 003087 15 SLFISPRGERVAVAAVNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIV-DDTHTVYFFKANGEEITRFTN 93 (849)
Q Consensus 15 slafSPdG~~LAsas~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~-~~dgtIrlWd~~g~~~~~l~~ 93 (849)
..+..|++ +|..+..+.|+..+.... ..... ..+......++|.|.++.|-.+ ...+.|+.++..|.....+..
T Consensus 38 C~~~~~~~-~ll~~~~~~I~~i~~~g~---~~~~~-~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~ 112 (349)
T 3v64_C 38 CKALGPEP-VLLFANRIDIRQVLPHRS---EYTLL-LNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS 112 (349)
T ss_dssp EEESSSCC-EEEEECBSCEEEECTTSC---CEEEE-ECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC
T ss_pred ccccccCc-eeEeecccceEEEeCCCC---eeEEe-ecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEe
Confidence 34445543 333444556666665431 11111 1234457899999866665544 467889999998765444322
Q ss_pred ccccccccEEEEEecC-CcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEcCCC
Q 003087 94 KHLKVSLPIIGLIAQD-ETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPEL 172 (849)
Q Consensus 94 ~~~~~~~~V~~l~fs~-~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg 172 (849)
... ....++++.+ ++..-| +-...+.|...+...... ..+ +.+.. ...+.++++|++
T Consensus 113 ~~~---~~p~glavd~~~g~ly~-------~d~~~~~I~~~~~dG~~~-~~l----------~~~~l-~~P~~iavdp~~ 170 (349)
T 3v64_C 113 TGL---ESPGGLAVDWVHDKLYW-------TDSGTSRIEVANLDGAHR-KVL----------LWQSL-EKPRAIALHPME 170 (349)
T ss_dssp SSC---SCCCEEEEETTTTEEEE-------EETTTTEEEEEETTSCSC-EEE----------ECTTC-SCEEEEEEETTT
T ss_pred CCC---CCccEEEEecCCCeEEE-------EcCCCCeEEEEcCCCCce-EEE----------EeCCC-CCcceEEEecCc
Confidence 111 1234667654 222111 113455666666542211 110 11111 236899999977
Q ss_pred ceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEEeC-CC
Q 003087 173 SLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDT-NG 251 (849)
Q Consensus 173 ~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~-Dg 251 (849)
..|..+..... + .|...++++.. ...+... ....-..|+|+|+++.|..++. .+
T Consensus 171 g~ly~td~~~~---------~--~I~r~~~dG~~-~~~~~~~-------------~~~~PnGla~d~~~~~lY~aD~~~~ 225 (349)
T 3v64_C 171 GTIYWTDWGNT---------P--RIEASSMDGSG-RRIIADT-------------HLFWPNGLTIDYAGRRMYWVDAKHH 225 (349)
T ss_dssp TEEEEEECSSS---------C--EEEEEETTSCS-CEESCCS-------------SCSCEEEEEEETTTTEEEEEETTTT
T ss_pred CeEEEeccCCC---------C--EEEEEeCCCCC-cEEEEEC-------------CCCCcceEEEeCCCCEEEEEECCCC
Confidence 66665543320 1 24444444421 1111110 0123457999998888777764 56
Q ss_pred cEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCEEEEEE-eCCcEEEEEecCCc
Q 003087 252 CLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNILILAR-KSSIITMIDVLSGL 322 (849)
Q Consensus 252 tv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~la~a~-~dgti~lwdl~~~~ 322 (849)
.|..+++++... ..+.. .....+..++. .++.+..+. .++.|...+..+|+
T Consensus 226 ~I~~~~~dG~~~--~~~~~-----------------~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~ 277 (349)
T 3v64_C 226 VIERANLDGSHR--KAVIS-----------------QGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGK 277 (349)
T ss_dssp EEEEEETTSCSC--EEEEC-----------------SSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCC
T ss_pred EEEEEeCCCCce--EEEEe-----------------CCCCCceEEEE-ECCEEEEecCCCCeEEEEEccCCC
Confidence 788888876422 12210 01234566777 455555554 56678777755665
No 264
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=96.46 E-value=0.19 Score=54.39 Aligned_cols=62 Identities=16% Similarity=0.267 Sum_probs=42.5
Q ss_pred CCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCEEEEEEeCCcEEEEEecC
Q 003087 241 GKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNILILARKSSIITMIDVLS 320 (849)
Q Consensus 241 G~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~la~a~~dgti~lwdl~~ 320 (849)
+..|..++.+|.|..+|..+++. ++.... .....+.. .++.+.+++.+|.|..+|..+
T Consensus 239 ~~~v~~~~~~g~l~~~d~~tG~~-~w~~~~--------------------~~~~~~~~-~~~~l~~~~~~g~l~~~d~~t 296 (376)
T 3q7m_A 239 NGVVFALAYNGNLTALDLRSGQI-MWKREL--------------------GSVNDFIV-DGNRIYLVDQNDRVMALTIDG 296 (376)
T ss_dssp TTEEEEECTTSCEEEEETTTCCE-EEEECC--------------------CCEEEEEE-ETTEEEEEETTCCEEEEETTT
T ss_pred CCEEEEEecCcEEEEEECCCCcE-EeeccC--------------------CCCCCceE-ECCEEEEEcCCCeEEEEECCC
Confidence 45666678899999999988754 332210 11233332 477788888899999999998
Q ss_pred Cccc
Q 003087 321 GLKV 324 (849)
Q Consensus 321 ~~~l 324 (849)
++.+
T Consensus 297 G~~~ 300 (376)
T 3q7m_A 297 GVTL 300 (376)
T ss_dssp CCEE
T ss_pred CcEE
Confidence 8754
No 265
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=96.36 E-value=0.54 Score=53.68 Aligned_cols=281 Identities=10% Similarity=0.030 Sum_probs=134.6
Q ss_pred ccceEEEEEcC-CCCeEEEEe-C-CeEEEEecCCCCCcceeeeeecC---CCCEEEEEE-------CCCCCEEEEEeCCC
Q 003087 10 TKKQVSLFISP-RGERVAVAA-V-NQVTILQKDDDYQEPCGIFNCTG---LGASIYGAW-------SESHDVLGIVDDTH 76 (849)
Q Consensus 10 ~~~v~slafSP-dG~~LAsas-~-~~i~iw~~~~~~~~~~~~~~~~~---~~~v~~vaf-------SPDG~~LAs~~~dg 76 (849)
......|+|+| ++..|-++. . +.|++.|..++ . +..+...+ ......|+| +++|++|.+++..+
T Consensus 138 ~~~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~--~-v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~ 214 (496)
T 3kya_A 138 FSDNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNR--M-LSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYD 214 (496)
T ss_dssp CCSEEEEEEETTEEEEEEEEEETEEEEEEEETTTT--E-EEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCC
T ss_pred cCCCCEEEEccCCCCEEEEEECCCCeEEEEECCCC--E-EEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCC
Confidence 34578999999 455554444 3 46777776542 1 22221111 224689999 99999777666654
Q ss_pred -c------EEEEecCC--ccc-----eecccccccccccEEEEEecCCcccccccceeEEEE-eCCCcEEEEEec-----
Q 003087 77 -T------VYFFKANG--EEI-----TRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVF-TSDGFLHQIEIS----- 136 (849)
Q Consensus 77 -t------IrlWd~~g--~~~-----~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~-s~Dg~v~lw~~~----- 136 (849)
. |.+++... ... ..+. .. ..-.++++.|+. ..++++ ..+|.|..+++.
T Consensus 215 ~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~--~~---~~p~giavdp~~-------g~LYvtd~~~g~V~r~d~~~~~~~ 282 (496)
T 3kya_A 215 GKGDESPSVYIIKRNADGTFDDRSDIQLIA--AY---KQCNGATIHPIN-------GELYFNSYEKGQVFRLDLVDYFKT 282 (496)
T ss_dssp TTGGGEEEEEEEECCTTSCCSTTSCEEEEE--EE---SCCCCEEECTTT-------CCEEEEETTTTEEEEECHHHHHHH
T ss_pred CCcccCceEEEEecCCCCceeecccceeec--cC---CCceEEEEcCCC-------CeEEEEECCCCEEEEEeccccccc
Confidence 2 66665432 221 0110 00 112345554421 123333 466778888886
Q ss_pred --CCCCcccccccccC---CcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcC-cc-
Q 003087 137 --QDPSASISSASASS---SGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLE-LE- 209 (849)
Q Consensus 137 --~~~~~~~~~~~~~~---~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~-~~- 209 (849)
++..-........+ ...+... ...-+.++|+|+|+.|.++-... ..|+.++.++... +.
T Consensus 283 ~~tg~~~tp~~~~~~g~~~~l~~~~~--~~~p~~ia~~p~G~~lYvaD~~~------------h~I~kid~dg~~~~~~~ 348 (496)
T 3kya_A 283 IKNGGSWDPIVKNNPNTFKQLFTIAD--PSWEFQIFIHPTGKYAYFGVINN------------HYFMRSDYDEIKKEFIT 348 (496)
T ss_dssp HHTTCCCCCBGGGCTTTEEEEEECSS--SSCCEEEEECTTSSEEEEEETTT------------TEEEEEEEETTTTEECC
T ss_pred ccCceeecccccccccccceeEecCC--CCCceEEEEcCCCCEEEEEeCCC------------CEEEEEecCCCcceecc
Confidence 44320000000000 0011111 12357999999999766664443 1244444444210 00
Q ss_pred -cceecc--ccceeeccCCCccccccc-eEEEc-------cCCCEEEEEeCCCcEEEEecCCCcccccccccccccc---
Q 003087 210 -QLYTTQ--IEGLYCEPKGHEVQLAHP-KVLIS-------PQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFD--- 275 (849)
Q Consensus 210 -~l~~~~--~~~~~~~~~g~~h~~~V~-~vafS-------PDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~--- 275 (849)
..+... ..|.-..+........-. .++.. ++|.+.++=..+..|+.++..+ .+.++.......
T Consensus 349 ~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~~G---~v~TiaG~g~~~~~~ 425 (496)
T 3kya_A 349 PYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTPEG---IVSTYAGRGASTSLA 425 (496)
T ss_dssp CEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECTTC---BEEEEEESCTTHHHH
T ss_pred cEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeCCC---CEEEEeccccccccc
Confidence 011111 001000000000001112 34554 5777777666788999998443 234443221100
Q ss_pred --cc-cc-cc-cCCCCCCCCCCcEEEEEecC-CEEEEEE-eCCcEEEEEecCCccc
Q 003087 276 --LQ-VA-DS-LFDGRTKPISDITDFAWWSD-NILILAR-KSSIITMIDVLSGLKV 324 (849)
Q Consensus 276 --~~-~~-~~-l~~~~~~~~~~v~~vaws~D-~~la~a~-~dgti~lwdl~~~~~l 324 (849)
.. ++ +- +.. ...+..+..|++.++ |.|.++. .++.|+.+++.....+
T Consensus 426 ~~~~~G~~dG~~~~--~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~ 479 (496)
T 3kya_A 426 DGNQWGTDDGDLRE--VARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENV 479 (496)
T ss_dssp HSCSCCCCCEETTT--TCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC--
T ss_pred CccccccCCCCchh--hhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCccc
Confidence 00 00 00 000 123456889999997 8888875 4568998888765533
No 266
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=96.34 E-value=0.28 Score=53.10 Aligned_cols=187 Identities=13% Similarity=0.076 Sum_probs=94.5
Q ss_pred CCEEEEEeCCCcEEEEecC-CccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccc
Q 003087 66 HDVLGIVDDTHTVYFFKAN-GEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASIS 144 (849)
Q Consensus 66 G~~LAs~~~dgtIrlWd~~-g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~ 144 (849)
+..+..+..+|.|..+|.. |+.+.+...........+..+.-....-. ..+..+++.+.+|.+..+|..+|+.....
T Consensus 188 ~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~v~~~~~~g~l~~~d~~tG~~~w~~ 265 (376)
T 3q7m_A 188 FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPV--VVNGVVFALAYNGNLTALDLRSGQIMWKR 265 (376)
T ss_dssp TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCE--EETTEEEEECTTSCEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcE--EECCEEEEEecCcEEEEEECCCCcEEeec
Confidence 3456677788999999984 77655543221000000000000000000 01235677788999999998877653221
Q ss_pred cccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccC
Q 003087 145 SASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPK 224 (849)
Q Consensus 145 ~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~ 224 (849)
. .....++... +..+.+++.++. |..++..++. .++.... .
T Consensus 266 -----------~---~~~~~~~~~~--~~~l~~~~~~g~-------------l~~~d~~tG~---~~w~~~~------~- 306 (376)
T 3q7m_A 266 -----------E---LGSVNDFIVD--GNRIYLVDQNDR-------------VMALTIDGGV---TLWTQSD------L- 306 (376)
T ss_dssp -----------C---CCCEEEEEEE--TTEEEEEETTCC-------------EEEEETTTCC---EEEEECT------T-
T ss_pred -----------c---CCCCCCceEE--CCEEEEEcCCCe-------------EEEEECCCCc---EEEeecc------c-
Confidence 1 1123444443 444555555541 5555554431 1111100 0
Q ss_pred CCccccccceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCEE
Q 003087 225 GHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNIL 304 (849)
Q Consensus 225 g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~l 304 (849)
....+.+..+ .+..|..++.+|.|..+|..+++. ++.+.... ......+ . -.++.|
T Consensus 307 ---~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~-~~~~~~~~--------------~~~~~~~---~-~~~~~l 362 (376)
T 3q7m_A 307 ---LHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRF-VAQQKVDS--------------SGFQTEP---V-AADGKL 362 (376)
T ss_dssp ---TTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCE-EEEEECCT--------------TCBCSCC---E-EETTEE
T ss_pred ---CCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcE-EEEEecCC--------------CcceeCC---E-EECCEE
Confidence 0011222333 356777888999999999998754 33332100 0011111 1 147889
Q ss_pred EEEEeCCcEEEEE
Q 003087 305 ILARKSSIITMID 317 (849)
Q Consensus 305 a~a~~dgti~lwd 317 (849)
.+++.+|.|..++
T Consensus 363 ~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 363 LIQAKDGTVYSIT 375 (376)
T ss_dssp EEEBTTSCEEEEE
T ss_pred EEEeCCCEEEEEe
Confidence 9999999998886
No 267
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=96.21 E-value=0.31 Score=51.43 Aligned_cols=192 Identities=12% Similarity=0.017 Sum_probs=96.3
Q ss_pred cceEEEEEcCCCCeEEEEeC-Ce--EEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCCc-
Q 003087 11 KKQVSLFISPRGERVAVAAV-NQ--VTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANGE- 86 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas~-~~--i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~- 86 (849)
+.+..++|+|||+++++..+ +. |..++..++ .........+...-..++..+++..+++-..+|.|+++|..+.
T Consensus 72 ~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g--~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~ 149 (306)
T 2p4o_A 72 GKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDG--TVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPS 149 (306)
T ss_dssp SEEEEEEECTTSCEEEEEECTTSCEEEEEECTTS--CEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTE
T ss_pred CCceeEEEcCCCcEEEEeccCCcceEEEEcCCCC--eEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCc
Confidence 35788999999997665543 33 444453332 2211111111222356677777777776667899999987642
Q ss_pred -cceecccc------cccccccEEEEEecCCcccccccceeEEEE-eCCCcEEEEEecC-CCCcccccccccCCcceecc
Q 003087 87 -EITRFTNK------HLKVSLPIIGLIAQDETDVQRSCLCSFTVF-TSDGFLHQIEISQ-DPSASISSASASSSGLTLRR 157 (849)
Q Consensus 87 -~~~~l~~~------~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~-s~Dg~v~lw~~~~-~~~~~~~~~~~~~~~~~l~~ 157 (849)
.+...... ...+ ..-.+| ++++. .+++. +..+.|..+++.. +..... + .+.
T Consensus 150 ~~v~~~~~~~~~~~~~~~~-~~pngi--s~dg~-------~lyv~d~~~~~I~~~~~~~~g~~~~~-~--------~~~- 209 (306)
T 2p4o_A 150 GSIWLEHPMLARSNSESVF-PAANGL--KRFGN-------FLYVSNTEKMLLLRIPVDSTDKPGEP-E--------IFV- 209 (306)
T ss_dssp EEEEEECGGGSCSSTTCCS-CSEEEE--EEETT-------EEEEEETTTTEEEEEEBCTTSCBCCC-E--------EEE-
T ss_pred EeEEEECCccccccccCCC-CcCCCc--CcCCC-------EEEEEeCCCCEEEEEEeCCCCCCCcc-E--------EEe-
Confidence 22111110 0000 112333 33221 23333 4567888888864 221100 0 111
Q ss_pred ccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEE
Q 003087 158 QFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLI 237 (849)
Q Consensus 158 ~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vaf 237 (849)
.. .....++++|+|++.++....+ .|..++..+.. ..+.... . ......+++|
T Consensus 210 ~~-~~P~gi~vd~dG~l~va~~~~~-------------~V~~~~~~G~~--~~~~~~~------~-----~~~~p~~~a~ 262 (306)
T 2p4o_A 210 EQ-TNIDDFAFDVEGNLYGATHIYN-------------SVVRIAPDRST--TIIAQAE------Q-----GVIGSTAVAF 262 (306)
T ss_dssp ES-CCCSSEEEBTTCCEEEECBTTC-------------CEEEECTTCCE--EEEECGG------G-----TCTTEEEEEE
T ss_pred cc-CCCCCeEECCCCCEEEEeCCCC-------------eEEEECCCCCE--EEEeecc------c-----ccCCceEEEE
Confidence 11 1246689999998764432222 25666544321 0010000 0 1134678999
Q ss_pred c---cCCCEEEEEeCCC
Q 003087 238 S---PQGKFVATSDTNG 251 (849)
Q Consensus 238 S---PDG~~LAs~s~Dg 251 (849)
+ |||+.|..++..+
T Consensus 263 ~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 263 GQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp CCSTTTTTEEEEEECTT
T ss_pred ecccCCCCEEEEECCCC
Confidence 9 9988877766543
No 268
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=96.17 E-value=0.1 Score=56.38 Aligned_cols=179 Identities=8% Similarity=0.026 Sum_probs=97.7
Q ss_pred EEEEECC-CCCEEEEEeCCCcEEEEecCCccceeccccc----ccccccEEEEEe---cCCcccccccce--eEEE----
Q 003087 58 IYGAWSE-SHDVLGIVDDTHTVYFFKANGEEITRFTNKH----LKVSLPIIGLIA---QDETDVQRSCLC--SFTV---- 123 (849)
Q Consensus 58 ~~vafSP-DG~~LAs~~~dgtIrlWd~~g~~~~~l~~~~----~~~~~~V~~l~f---s~~~~~~~s~~~--~~~~---- 123 (849)
.+++|.+ +|++++|.-..|+|..|+..++....+.-.. ..-...+.+|.+ .+++......+. .|-+
T Consensus 16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~ 95 (334)
T 2p9w_A 16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQS 95 (334)
T ss_dssp SCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCC
T ss_pred cCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccc
Confidence 4689976 6777777768999999999854322221111 111123568888 343321110000 0000
Q ss_pred EeCCCcEEEEEec---CCCCcccccccccCCcc---eeccccCCceEEEEEcCCCceEEEEecC-CCCccccCCCCCCce
Q 003087 124 FTSDGFLHQIEIS---QDPSASISSASASSSGL---TLRRQFPQNVICTDYHPELSLLSVVSNT-DTSSLTSSGNSGPCC 196 (849)
Q Consensus 124 ~s~Dg~v~lw~~~---~~~~~~~~~~~~~~~~~---~l~~~~~~~V~svafsPdg~lLas~g~d-~t~~~~~~~~~G~~~ 196 (849)
.+.+..|..+|+. +++...... ++.... .+.|+-....+.++..++|+.-++++.. + .|+-+...|. .
T Consensus 96 ~~g~~~v~~~Dl~~~~tg~~~~~~d--L~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~--~I~rV~pdG~-~ 170 (334)
T 2p9w_A 96 SHGASSFHSFNLPLSENSKPVWSVN--FEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMP--AIARVSADGK-T 170 (334)
T ss_dssp SSSCCEEEEEESSCCTTCCCSEEEE--SHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSC--EEEEECTTSC-C
T ss_pred cCCCCEEEEEcCCcCCCCCEEEEec--CccccccccccccccccCCceeEECCCCCEEEeCCCCCC--eEEEEeCCCC-E
Confidence 0136778889987 555432211 000000 0001111248999999999988776655 4 3343333333 2
Q ss_pred eeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEEeCCCcEEEEecCC
Q 003087 197 ISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDK 260 (849)
Q Consensus 197 I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~ 260 (849)
+..|.+.... .. ...+...|++.|||++|+....+|.|.-+|+..
T Consensus 171 ~~~~~~~~~~-----------------~~--~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 171 VSTFAWESGN-----------------GG--QRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp EEEEEECCCC-----------------SS--SCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred EeeeeecCCC-----------------cc--cccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 3334332210 00 122566899999999999998899999999884
No 269
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.11 E-value=0.33 Score=54.01 Aligned_cols=154 Identities=14% Similarity=0.189 Sum_probs=94.5
Q ss_pred EEEcCCCCeEEEEeCCeEEEEecCCCCCcceeeeeec---CCCCEEEEEECCCCCEEEEEeCCCcEEEEecC-Cccce--
Q 003087 16 LFISPRGERVAVAAVNQVTILQKDDDYQEPCGIFNCT---GLGASIYGAWSESHDVLGIVDDTHTVYFFKAN-GEEIT-- 89 (849)
Q Consensus 16 lafSPdG~~LAsas~~~i~iw~~~~~~~~~~~~~~~~---~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~-g~~~~-- 89 (849)
...+-||..|.++.++.||.=+..++. .-..+... .-..+..+..||+|++||..+. .+|+|-.+. +....
T Consensus 26 ~~~~~n~t~i~~a~~n~iR~~~i~~~~--~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~ 102 (452)
T 3pbp_A 26 IFSSQNGTRIVFIQDNIIRWYNVLTDS--LYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVED 102 (452)
T ss_dssp EEEETTTTEEEEEETTEEEEEETTTCS--SCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCC
T ss_pred EEEEcCCCEEEEEECCEEEEEECCCCC--cceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcc
Confidence 345689999999988888765655321 11122211 1235788999999999999876 479999886 42110
Q ss_pred ----------eccccccc--ccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcc-cccccccCCcceec
Q 003087 90 ----------RFTNKHLK--VSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSAS-ISSASASSSGLTLR 156 (849)
Q Consensus 90 ----------~l~~~~~~--~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~-~~~~~~~~~~~~l~ 156 (849)
...-+... ...+|..+.|+|-+.. ++ .+.+.+.|++||+||+....... .+.+. ...+.+.
T Consensus 103 ~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~-ds---~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~--~~~fg~d 176 (452)
T 3pbp_A 103 VSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYR-DS---CIVVLKEDDTITMFDILNSQEKPIVLNKP--NNSFGLD 176 (452)
T ss_dssp HHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGG-GC---EEEEEETTSCEEEEETTCTTSCCEEESCC--CSEEESC
T ss_pred cccccccceeEEEcCCcccCCCCceeEEEeccccCC-CC---eEEEEecCCEEEEEEcccCCCCCcchhcc--ccccCCC
Confidence 11111111 1356999999994432 23 48888999999999998632211 11100 0111111
Q ss_pred cccCCceEEEEEcCCCceEEEEe
Q 003087 157 RQFPQNVICTDYHPELSLLSVVS 179 (849)
Q Consensus 157 ~~~~~~V~svafsPdg~lLas~g 179 (849)
.. ...|.+++|+++|-.|.+..
T Consensus 177 ~~-~~ev~S~~Fg~~~lTLYvl~ 198 (452)
T 3pbp_A 177 AR-VNDITDLEFSKDGLTLYCLN 198 (452)
T ss_dssp SS-CCCEEEEEECTTSSCEEEEE
T ss_pred cc-cceEEEEEEcCCCcEEEEEe
Confidence 11 13589999999998888765
No 270
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=96.05 E-value=0.8 Score=49.60 Aligned_cols=199 Identities=10% Similarity=-0.069 Sum_probs=106.4
Q ss_pred cceEEEEEcCCCCeEEEEe--CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEE-EEEeCCCcEEEEecCCcc
Q 003087 11 KKQVSLFISPRGERVAVAA--VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVL-GIVDDTHTVYFFKANGEE 87 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas--~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~L-As~~~dgtIrlWd~~g~~ 87 (849)
..+..|+|+|.++.|-.+. .+.|..++..+.. .......+......+|+.+.+..| .+-...+.|.+.+.+|..
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~---~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~ 149 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSN---VEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH 149 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS---CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCC---ceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCc
Confidence 4568899998777775553 4677777765321 111211122334678999865555 555567899999999876
Q ss_pred ceecccccccccccEEEEEecC-CcccccccceeEEEEeCC-CcEEEEEecCCCCcccccccccCCcceeccccCCceEE
Q 003087 88 ITRFTNKHLKVSLPIIGLIAQD-ETDVQRSCLCSFTVFTSD-GFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVIC 165 (849)
Q Consensus 88 ~~~l~~~~~~~~~~V~~l~fs~-~~~~~~s~~~~~~~~s~D-g~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~s 165 (849)
...+..... ..-.++++.| ++..-|+ -... +.|...+..... ...+. .... ..-+.
T Consensus 150 ~~~l~~~~l---~~P~~iavdp~~g~ly~t-------d~~~~~~I~r~~~dG~~-~~~~~----------~~~~-~~PnG 207 (349)
T 3v64_C 150 RKVLLWQSL---EKPRAIALHPMEGTIYWT-------DWGNTPRIEASSMDGSG-RRIIA----------DTHL-FWPNG 207 (349)
T ss_dssp CEEEECTTC---SCEEEEEEETTTTEEEEE-------ECSSSCEEEEEETTSCS-CEESC----------CSSC-SCEEE
T ss_pred eEEEEeCCC---CCcceEEEecCcCeEEEe-------ccCCCCEEEEEeCCCCC-cEEEE----------ECCC-CCcce
Confidence 444432211 2346788876 3322221 1122 556555543211 11110 0011 23689
Q ss_pred EEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEE
Q 003087 166 TDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVA 245 (849)
Q Consensus 166 vafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LA 245 (849)
++|+|++..|..+-... + .|...++++.. ...+... ....-..|++ .+|.+..
T Consensus 208 la~d~~~~~lY~aD~~~----------~--~I~~~~~dG~~-~~~~~~~-------------~~~~P~giav-~~~~ly~ 260 (349)
T 3v64_C 208 LTIDYAGRRMYWVDAKH----------H--VIERANLDGSH-RKAVISQ-------------GLPHPFAITV-FEDSLYW 260 (349)
T ss_dssp EEEETTTTEEEEEETTT----------T--EEEEEETTSCS-CEEEECS-------------SCSSEEEEEE-ETTEEEE
T ss_pred EEEeCCCCEEEEEECCC----------C--EEEEEeCCCCc-eEEEEeC-------------CCCCceEEEE-ECCEEEE
Confidence 99999888887764432 1 35556655431 1111111 0112346777 4555555
Q ss_pred EEeCCCcEEEEecCCC
Q 003087 246 TSDTNGCLYIFEMDKD 261 (849)
Q Consensus 246 s~s~Dgtv~LWd~~~~ 261 (849)
+-...+.|...+..++
T Consensus 261 td~~~~~V~~~~~~~G 276 (349)
T 3v64_C 261 TDWHTKSINSANKFTG 276 (349)
T ss_dssp EETTTTEEEEEETTTC
T ss_pred ecCCCCeEEEEEccCC
Confidence 5556777777774443
No 271
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=96.03 E-value=0.04 Score=57.56 Aligned_cols=147 Identities=13% Similarity=0.014 Sum_probs=82.8
Q ss_pred EEEEcCCCCeEEEEe--CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecC-Cccceec
Q 003087 15 SLFISPRGERVAVAA--VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKAN-GEEITRF 91 (849)
Q Consensus 15 slafSPdG~~LAsas--~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~-g~~~~~l 91 (849)
...++++|+.|-.+. ++.+.++|..+ .+.++++...+.+ .++++||+.|..++.+++|+++|.. .+.+.++
T Consensus 89 geGit~~g~~ly~ltw~~~~v~v~D~~t--~~~~~ti~~~~eG----~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I 162 (262)
T 3nol_A 89 GEGISDWKDKIVGLTWKNGLGFVWNIRN--LRQVRSFNYDGEG----WGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTI 162 (262)
T ss_dssp EEEEEEETTEEEEEESSSSEEEEEETTT--CCEEEEEECSSCC----CCEEECSSCEEECCSSSEEEEECTTTCSEEEEE
T ss_pred eeEEEEeCCEEEEEEeeCCEEEEEECcc--CcEEEEEECCCCc----eEEecCCCEEEEECCCCeEEEEcCCCCeEEEEE
Confidence 344556677776554 67888888654 3455555532212 3455789988888888899999987 4555554
Q ss_pred cccc-ccccccEEEEEecCCcccccccceeEEEE-eCCCcEEEEEecCCCCcccccccccCCcceec--ccc-CCceEEE
Q 003087 92 TNKH-LKVSLPIIGLIAQDETDVQRSCLCSFTVF-TSDGFLHQIEISQDPSASISSASASSSGLTLR--RQF-PQNVICT 166 (849)
Q Consensus 92 ~~~~-~~~~~~V~~l~fs~~~~~~~s~~~~~~~~-s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~--~~~-~~~V~sv 166 (849)
.-.. ......++.+.+.++. +++. -.++.|.+.|..+++....+... ....-. ... ...-+.+
T Consensus 163 ~V~~~g~~~~~lNELe~~~G~---------lyan~w~~~~I~vIDp~tG~V~~~Id~~---~L~~~~~~~~~~~~vlNGI 230 (262)
T 3nol_A 163 TVTAHGEELPELNELEWVDGE---------IFANVWQTNKIVRIDPETGKVTGIIDLN---GILAEAGPLPSPIDVLNGI 230 (262)
T ss_dssp ECEETTEECCCEEEEEEETTE---------EEEEETTSSEEEEECTTTCBEEEEEECT---TGGGGSCSCCSSCCCEEEE
T ss_pred EeccCCccccccceeEEECCE---------EEEEEccCCeEEEEECCCCcEEEEEECC---cCccccccccCcCCceEEE
Confidence 3321 0000123345554322 2222 24567888888777764433300 000000 001 1246999
Q ss_pred EEcCCCceEEEEe
Q 003087 167 DYHPELSLLSVVS 179 (849)
Q Consensus 167 afsPdg~lLas~g 179 (849)
||+|+++.|.++|
T Consensus 231 A~dp~~~~lfVTG 243 (262)
T 3nol_A 231 AWDKEHHRLFVTG 243 (262)
T ss_dssp EEETTTTEEEEEE
T ss_pred EEcCCCCEEEEEC
Confidence 9999999888775
No 272
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=95.97 E-value=0.8 Score=49.01 Aligned_cols=229 Identities=8% Similarity=0.006 Sum_probs=117.0
Q ss_pred EEEEeCCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEE-EEEeCCCcEEEEecCCccc-eecccccccccccE
Q 003087 25 VAVAAVNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVL-GIVDDTHTVYFFKANGEEI-TRFTNKHLKVSLPI 102 (849)
Q Consensus 25 LAsas~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~L-As~~~dgtIrlWd~~g~~~-~~l~~~~~~~~~~V 102 (849)
|..+..+.|+..+.+....... ....+......|+|.+.++.| .+-...+.|+.++.+|... ..+..... ...
T Consensus 7 ll~~~~~~I~~i~l~~~~~~~~--~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l---~~p 81 (318)
T 3sov_A 7 LLYANRRDLRLVDATNGKENAT--IVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGL---LSP 81 (318)
T ss_dssp EEEECEEEEEEEETTCTTSCCE--EEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECC---SCC
T ss_pred EEEEccCeEEEEECCCCceEEE--EEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCC---CCc
Confidence 4444456788777654310111 111112345789999965544 4555678899999887531 11111110 123
Q ss_pred EEEEecC-CcccccccceeEEEE-eCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEec
Q 003087 103 IGLIAQD-ETDVQRSCLCSFTVF-TSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSN 180 (849)
Q Consensus 103 ~~l~fs~-~~~~~~s~~~~~~~~-s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~ 180 (849)
.++++.+ ++. ++.. ...+.|.+++...... ..+ +.... ..-+.++++|.+..|..+..
T Consensus 82 ~glavd~~~g~--------ly~~d~~~~~I~~~~~dG~~~-~~l----------~~~~~-~~P~giavdp~~g~ly~td~ 141 (318)
T 3sov_A 82 DGLACDWLGEK--------LYWTDSETNRIEVSNLDGSLR-KVL----------FWQEL-DQPRAIALDPSSGFMYWTDW 141 (318)
T ss_dssp CEEEEETTTTE--------EEEEETTTTEEEEEETTSCSC-EEE----------ECSSC-SSEEEEEEEGGGTEEEEEEC
T ss_pred cEEEEEcCCCe--------EEEEECCCCEEEEEECCCCcE-EEE----------EeCCC-CCccEEEEeCCCCEEEEEec
Confidence 4566643 222 2221 3456677776543211 111 01111 23689999997666665543
Q ss_pred CCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEEeC-CCcEEEEecC
Q 003087 181 TDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDT-NGCLYIFEMD 259 (849)
Q Consensus 181 d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~-Dgtv~LWd~~ 259 (849)
... + .|...++++.. ...+... + -..-..|+|+|+++.|..++. .+.|..++++
T Consensus 142 ~~~---------~--~I~r~~~dG~~-~~~~~~~---~----------l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~d 196 (318)
T 3sov_A 142 GEV---------P--KIERAGMDGSS-RFIIINS---E----------IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLD 196 (318)
T ss_dssp SSS---------C--EEEEEETTSCS-CEEEECS---S----------CSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCC---------C--EEEEEEcCCCC-eEEEEEC---C----------CCCccEEEEeccCCEEEEEECCCCEEEEEcCC
Confidence 211 1 13333333321 1111110 0 113357999998888777764 6788888887
Q ss_pred CCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCEEEEEEeCCcEEEEEecCCc
Q 003087 260 KDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNILILARKSSIITMIDVLSGL 322 (849)
Q Consensus 260 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~la~a~~dgti~lwdl~~~~ 322 (849)
+... ..+.. .....+..++...++.+.+-...+.|...+..+|+
T Consensus 197 G~~~--~~~~~-----------------~~~~~P~glav~~~~lywtd~~~~~V~~~~~~~G~ 240 (318)
T 3sov_A 197 GTNR--QAVVK-----------------GSLPHPFALTLFEDILYWTDWSTHSILACNKYTGE 240 (318)
T ss_dssp SCSC--EEEEC-----------------SCCSCEEEEEEETTEEEEEETTTTEEEEEETTTCC
T ss_pred CCce--EEEec-----------------CCCCCceEEEEeCCEEEEEecCCCeEEEEECCCCC
Confidence 6422 22210 01234566776444333444466788888887665
No 273
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=95.90 E-value=1.8 Score=47.17 Aligned_cols=193 Identities=11% Similarity=0.101 Sum_probs=95.3
Q ss_pred ceEEEEEcCCCCeEEEE-------------eCCeEEEEecCCCCCcceeeeeecC------CCCEEEEEECC--CCC--E
Q 003087 12 KQVSLFISPRGERVAVA-------------AVNQVTILQKDDDYQEPCGIFNCTG------LGASIYGAWSE--SHD--V 68 (849)
Q Consensus 12 ~v~slafSPdG~~LAsa-------------s~~~i~iw~~~~~~~~~~~~~~~~~------~~~v~~vafSP--DG~--~ 68 (849)
....+++.|+|..+.+. .++.|-+++......+.. .+...+ .-.-..+.+-+ ||+ +
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~-~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L 129 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVS-ELEIIGNTLDISSFNPHGISTFIDDDNTVYL 129 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEE-ECEEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceE-EEEccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence 45789999999877665 356788888653211211 122111 11335566654 565 4
Q ss_pred EEEEeC--CCcEEEEecC--CccceecccccccccccEEEEEecCCcccccccceeEEEEe----------------CCC
Q 003087 69 LGIVDD--THTVYFFKAN--GEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFT----------------SDG 128 (849)
Q Consensus 69 LAs~~~--dgtIrlWd~~--g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s----------------~Dg 128 (849)
+++-.. +.+|.||+++ ++....+..-....-...+.+++.+++. |++.+ ..+
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~--------fyvt~~~~ftd~~~~~~e~~~~~~ 201 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH--------FYATNDHYFIDPYLKSWEMHLGLA 201 (355)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE--------EEEEESCSCSSHHHHHHHHHTTCC
T ss_pred EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCC--------EEecCCcEeCCcccccchhhccCC
Confidence 444333 5688888774 3332222111111112355666644332 11110 011
Q ss_pred cEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCc
Q 003087 129 FLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLEL 208 (849)
Q Consensus 129 ~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~ 208 (849)
.=++|.+..+..... ..+. ..-|.++|||||+.|.++.... ..|..++++....+
T Consensus 202 ~g~vyr~d~~~~~~~------------~~~l-~~pNGia~spDg~~lYvadt~~------------~~I~~~~~~~~g~l 256 (355)
T 3sre_A 202 WSFVTYYSPNDVRVV------------AEGF-DFANGINISPDGKYVYIAELLA------------HKIHVYEKHANWTL 256 (355)
T ss_dssp CEEEEEECTTCCEEE------------EEEE-SSEEEEEECTTSSEEEEEEGGG------------TEEEEEEECTTSCE
T ss_pred ccEEEEEECCeEEEe------------ecCC-cccCcceECCCCCEEEEEeCCC------------CeEEEEEECCCCcE
Confidence 234444443322111 1121 1369999999999998875543 13666666532111
Q ss_pred ccceeccccceeeccCCCccccccceEEEcc-CCCEEEEEeCC
Q 003087 209 EQLYTTQIEGLYCEPKGHEVQLAHPKVLISP-QGKFVATSDTN 250 (849)
Q Consensus 209 ~~l~~~~~~~~~~~~~g~~h~~~V~~vafSP-DG~~LAs~s~D 250 (849)
.. . ..+ ... ...-.+++.+ +|++.+++..+
T Consensus 257 ~~---~---~~~-~~~-----g~PDGi~vD~e~G~lwva~~~~ 287 (355)
T 3sre_A 257 TP---L---RVL-SFD-----TLVDNISVDPVTGDLWVGCHPN 287 (355)
T ss_dssp EE---E---EEE-ECS-----SEEEEEEECTTTCCEEEEEESC
T ss_pred ec---C---EEE-eCC-----CCCceEEEeCCCCcEEEEecCC
Confidence 11 0 111 111 1334688888 59988877655
No 274
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=95.89 E-value=0.46 Score=52.33 Aligned_cols=199 Identities=10% Similarity=-0.066 Sum_probs=105.3
Q ss_pred cceEEEEEcCCCCeEEEEe--CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEE-EEEeCCCcEEEEecCCcc
Q 003087 11 KKQVSLFISPRGERVAVAA--VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVL-GIVDDTHTVYFFKANGEE 87 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas--~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~L-As~~~dgtIrlWd~~g~~ 87 (849)
+.+..|+|+|.++.|-.+. .+.|..++..+.. .......+......+|+.|.+..| .+-...++|.+.+.+|..
T Consensus 116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~---~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~ 192 (386)
T 3v65_B 116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSN---VEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH 192 (386)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC---EEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCS
T ss_pred CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCC---cEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCc
Confidence 4578899998777765553 4678777765321 112211122234578999865555 455557889999998876
Q ss_pred ceecccccccccccEEEEEecC-CcccccccceeEEEEeCC-CcEEEEEecCCCCcccccccccCCcceeccccCCceEE
Q 003087 88 ITRFTNKHLKVSLPIIGLIAQD-ETDVQRSCLCSFTVFTSD-GFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVIC 165 (849)
Q Consensus 88 ~~~l~~~~~~~~~~V~~l~fs~-~~~~~~s~~~~~~~~s~D-g~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~s 165 (849)
...+..... ..-.+|++.| ++..-|+ -... +.|...+.... ....+. .... ..-+.
T Consensus 193 ~~~l~~~~l---~~P~giavdp~~g~ly~t-------d~~~~~~I~r~~~dG~-~~~~~~----------~~~~-~~PnG 250 (386)
T 3v65_B 193 RKVLLWQSL---EKPRAIALHPMEGTIYWT-------DWGNTPRIEASSMDGS-GRRIIA----------DTHL-FWPNG 250 (386)
T ss_dssp CEEEECSSC---SCEEEEEEETTTTEEEEE-------ECSSSCEEEEEETTSC-SCEEEE----------CSSC-SCEEE
T ss_pred eEEeecCCC---CCCcEEEEEcCCCeEEEe-------ccCCCCEEEEEeCCCC-CcEEEE----------ECCC-CCeee
Confidence 444432221 2346777765 3322111 0122 45555554321 111110 0111 23689
Q ss_pred EEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEE
Q 003087 166 TDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVA 245 (849)
Q Consensus 166 vafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LA 245 (849)
++|+|++..|..+-... + .|...++++.. ...+... ....-..|++ ..|.+..
T Consensus 251 lavd~~~~~lY~aD~~~----------~--~I~~~d~dG~~-~~~~~~~-------------~~~~P~giav-~~~~ly~ 303 (386)
T 3v65_B 251 LTIDYAGRRMYWVDAKH----------H--VIERANLDGSH-RKAVISQ-------------GLPHPFAITV-FEDSLYW 303 (386)
T ss_dssp EEEEGGGTEEEEEETTT----------T--EEEEECTTSCS-CEEEECS-------------SCSSEEEEEE-ETTEEEE
T ss_pred EEEeCCCCEEEEEECCC----------C--EEEEEeCCCCe-eEEEEEC-------------CCCCceEEEE-ECCEEEE
Confidence 99999888887764432 1 25555554421 1111110 0112346777 4566666
Q ss_pred EEeCCCcEEEEecCCC
Q 003087 246 TSDTNGCLYIFEMDKD 261 (849)
Q Consensus 246 s~s~Dgtv~LWd~~~~ 261 (849)
+-...+.|...+..++
T Consensus 304 td~~~~~V~~~~~~~G 319 (386)
T 3v65_B 304 TDWHTKSINSANKFTG 319 (386)
T ss_dssp EETTTTEEEEEETTTC
T ss_pred eeCCCCeEEEEECCCC
Confidence 6666788887775444
No 275
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=95.85 E-value=0.54 Score=48.99 Aligned_cols=195 Identities=6% Similarity=-0.048 Sum_probs=99.5
Q ss_pred cceEEEEEcCCCCeEEEEe-CC--eEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEE-EeCCCcEEEEecC-C
Q 003087 11 KKQVSLFISPRGERVAVAA-VN--QVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGI-VDDTHTVYFFKAN-G 85 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas-~~--~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs-~~~dgtIrlWd~~-g 85 (849)
...-.|.|+ ||.+..+.+ ++ +|+..|..+ ++............-..+++ +|+.|-. .-.++++.++|.. +
T Consensus 43 ~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~T--gkv~~~~~l~~~~FgeGit~--~g~~ly~ltw~~~~v~v~D~~t~ 117 (262)
T 3nol_A 43 AFTEGFFYR-NGYFYESTGLNGRSSIRKVDIES--GKTLQQIELGKRYFGEGISD--WKDKIVGLTWKNGLGFVWNIRNL 117 (262)
T ss_dssp CEEEEEEEE-TTEEEEEEEETTEEEEEEECTTT--CCEEEEEECCTTCCEEEEEE--ETTEEEEEESSSSEEEEEETTTC
T ss_pred cccceEEEE-CCEEEEECCCCCCceEEEEECCC--CcEEEEEecCCccceeEEEE--eCCEEEEEEeeCCEEEEEECccC
Confidence 345678899 787666665 34 788888764 34444443211111133444 4555554 4458899999986 5
Q ss_pred ccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEE
Q 003087 86 EEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVIC 165 (849)
Q Consensus 86 ~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~s 165 (849)
+.+.++.-... =+++++ ++ ..+++...++.|+.+|..+.+....+. ....|..-..++.
T Consensus 118 ~~~~ti~~~~e-----G~glt~--dg-------~~L~~SdGs~~i~~iDp~T~~v~~~I~-------V~~~g~~~~~lNE 176 (262)
T 3nol_A 118 RQVRSFNYDGE-----GWGLTH--ND-------QYLIMSDGTPVLRFLDPESLTPVRTIT-------VTAHGEELPELNE 176 (262)
T ss_dssp CEEEEEECSSC-----CCCEEE--CS-------SCEEECCSSSEEEEECTTTCSEEEEEE-------CEETTEECCCEEE
T ss_pred cEEEEEECCCC-----ceEEec--CC-------CEEEEECCCCeEEEEcCCCCeEEEEEE-------eccCCccccccce
Confidence 66655543210 123332 11 134444556778888877655433222 0111111134677
Q ss_pred EEEcCCCceEEEEecCCCCccccC-CCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEE
Q 003087 166 TDYHPELSLLSVVSNTDTSSLTSS-GNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFV 244 (849)
Q Consensus 166 vafsPdg~lLas~g~d~t~~~~~~-~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~L 244 (849)
+.|. +|++.|..-.++ .+.-| ..+|. .+..+++.+- .. .. +. ... -.+.-+.|||+|+++.|
T Consensus 177 Le~~-~G~lyan~w~~~--~I~vIDp~tG~-V~~~Id~~~L------~~-~~-~~-~~~----~~~vlNGIA~dp~~~~l 239 (262)
T 3nol_A 177 LEWV-DGEIFANVWQTN--KIVRIDPETGK-VTGIIDLNGI------LA-EA-GP-LPS----PIDVLNGIAWDKEHHRL 239 (262)
T ss_dssp EEEE-TTEEEEEETTSS--EEEEECTTTCB-EEEEEECTTG------GG-GS-CS-CCS----SCCCEEEEEEETTTTEE
T ss_pred eEEE-CCEEEEEEccCC--eEEEEECCCCc-EEEEEECCcC------cc-cc-cc-ccC----cCCceEEEEEcCCCCEE
Confidence 8887 887665432232 23322 33343 2233333221 00 00 00 000 11345689999999888
Q ss_pred EEEe
Q 003087 245 ATSD 248 (849)
Q Consensus 245 As~s 248 (849)
...+
T Consensus 240 fVTG 243 (262)
T 3nol_A 240 FVTG 243 (262)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 7766
No 276
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=95.80 E-value=0.36 Score=57.38 Aligned_cols=187 Identities=12% Similarity=0.133 Sum_probs=100.1
Q ss_pred EEEEEECCCCCEEEEEeCCCc-------------------EEEEecC-Cccceeccccccc-----ccccEE--EEEecC
Q 003087 57 SIYGAWSESHDVLGIVDDTHT-------------------VYFFKAN-GEEITRFTNKHLK-----VSLPII--GLIAQD 109 (849)
Q Consensus 57 v~~vafSPDG~~LAs~~~dgt-------------------IrlWd~~-g~~~~~l~~~~~~-----~~~~V~--~l~fs~ 109 (849)
+..+++.|++.++..+..+++ |.-+|.. |+.+.+....+.. ...+.. .+.+
T Consensus 232 w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~-- 309 (668)
T 1kv9_A 232 WDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNI-- 309 (668)
T ss_dssp CSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEE--
T ss_pred ccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEecc--
Confidence 346899999999988887764 8899975 7776655432111 011111 1111
Q ss_pred CcccccccceeEEEEeCCCcEEEEEecCCCCccccc--c-----ccc---CCc-------------cee---ccccCCce
Q 003087 110 ETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISS--A-----SAS---SSG-------------LTL---RRQFPQNV 163 (849)
Q Consensus 110 ~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~--~-----~~~---~~~-------------~~l---~~~~~~~V 163 (849)
++.. ...+++.+.+|.+..+|..+|+...... . .++ ... ..+ .|.+ .-
T Consensus 310 ~G~~----~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~--~w 383 (668)
T 1kv9_A 310 DGKP----RKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAH--NW 383 (668)
T ss_dssp TTEE----EEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSS--CS
T ss_pred CCcE----EEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCcccc--CC
Confidence 1110 0125666889999999988877542111 0 000 000 000 0000 01
Q ss_pred EEEEEcCCCceEEEEecCCCC------ccc------cCC-------------CCCCceeeEEEecCCcCcccceeccccc
Q 003087 164 ICTDYHPELSLLSVVSNTDTS------SLT------SSG-------------NSGPCCISLWRRCHNLELEQLYTTQIEG 218 (849)
Q Consensus 164 ~svafsPdg~lLas~g~d~t~------~~~------~~~-------------~~G~~~I~lW~~~~~~~~~~l~~~~~~~ 218 (849)
..++|+|+..++.+...+--. ..+ ..+ ..| .|..||+.++. .++...
T Consensus 384 ~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g--~l~A~D~~tG~---~~W~~~--- 455 (668)
T 1kv9_A 384 HSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSG--ALLAWDPVKQK---AAWKVP--- 455 (668)
T ss_dssp SCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEE--EEEEEETTTTE---EEEEEE---
T ss_pred CcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccc--eEEEEeCCCCc---EEEEcc---
Confidence 247899998887764332100 000 000 012 36677765541 222211
Q ss_pred eeeccCCCccccccceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccc
Q 003087 219 LYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFA 269 (849)
Q Consensus 219 ~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~ 269 (849)
+...+....++..|.+|+.++.||.|+.||..+++. ++.+.
T Consensus 456 ---------~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~-l~~~~ 496 (668)
T 1kv9_A 456 ---------YPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEA-LWQFE 496 (668)
T ss_dssp ---------ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCE-EEEEE
T ss_pred ---------CCCCCcCceeEeCCCEEEEECCcccchhhhhhcChh-heEec
Confidence 112334456667899999999999999999998865 45543
No 277
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=95.71 E-value=0.28 Score=53.47 Aligned_cols=171 Identities=12% Similarity=0.082 Sum_probs=84.3
Q ss_pred CCEEEEEECCCCCEEEEEeCCCcEEEEecCCccceec---ccccccccccEEEEEecCCcccccccceeEEEE---eCCC
Q 003087 55 GASIYGAWSESHDVLGIVDDTHTVYFFKANGEEITRF---TNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVF---TSDG 128 (849)
Q Consensus 55 ~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~~~~~l---~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~---s~Dg 128 (849)
..-+.++|.|||+++++-...|+|++++..+.....+ ..-...-..-..+|+|+|+-.... .|++. ..++
T Consensus 32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g----~lYv~yt~~~~~ 107 (347)
T 3das_A 32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDH----MVYAYFTSASDN 107 (347)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHC----EEEEEEECSSSE
T ss_pred CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCC----EEEEEEecCCCC
Confidence 4457899999999887776689999998753322222 110000013467899988532111 23332 1334
Q ss_pred cEEEEEecCCC----CcccccccccCCccee--ccccCCceEEEEEcCCCceEEEEecCCCCccccC--CCCCCceeeEE
Q 003087 129 FLHQIEISQDP----SASISSASASSSGLTL--RRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSS--GNSGPCCISLW 200 (849)
Q Consensus 129 ~v~lw~~~~~~----~~~~~~~~~~~~~~~l--~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~--~~~G~~~I~lW 200 (849)
.|--|....+. .....+..+ ..+ .++| .-..++|.|||.+.++.|..+.....+- ...| ++|
T Consensus 108 ~v~R~~~~~~~~~~~~~~~~~~i~----~~~p~~~~H--~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G----~Il 177 (347)
T 3das_A 108 RIVRMLYDEKKPSGEQLGAPDTVF----RGIPKGVIH--NGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGG----KIL 177 (347)
T ss_dssp EEEEEEBCTTSCTTCCBCCCEEEE----EEECCCSSC--CCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTT----CEE
T ss_pred EEEEEEeCCCCcccccCCCcEEEE----EcCCCCCCc--cCccccCCCCCCEEEEECCCCCCccccCCCCCCC----EEE
Confidence 45455544321 000000000 011 1122 3578999999998877665431110000 1123 467
Q ss_pred EecCCcCc---ccceeccccceeeccCCCccccccceEEEccCCCEEEEE
Q 003087 201 RRCHNLEL---EQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATS 247 (849)
Q Consensus 201 ~~~~~~~~---~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~ 247 (849)
+++..... .++... ..+. .| |. ....++|.|+|++.++=
T Consensus 178 Ri~~dG~ip~~nPf~~~---~i~a--~G--~R-Np~Gla~dp~G~L~~~d 219 (347)
T 3das_A 178 RMTPDGEPAPGNPFPGS---PVYS--YG--HR-NVQGLAWDDKQRLFASE 219 (347)
T ss_dssp EECTTSSBCTTCSSTTC---CEEE--BC--CS-BCCEEEECTTCCEEEEE
T ss_pred EEeCCCCccCCCCCCCC---eEEe--eC--CC-CcceEEECCCCCEEEEe
Confidence 77542110 011000 1111 12 32 34589999999877654
No 278
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=95.49 E-value=0.054 Score=56.69 Aligned_cols=148 Identities=10% Similarity=-0.041 Sum_probs=81.5
Q ss_pred EEcCCCCeEEEEe--CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecC-Cccceeccc
Q 003087 17 FISPRGERVAVAA--VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKAN-GEEITRFTN 93 (849)
Q Consensus 17 afSPdG~~LAsas--~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~-g~~~~~l~~ 93 (849)
.++++|+.|-.+. ++.+.++|..+ .+.++++...+.+ .+.++||+.|..++.+++|+++|.. .+.+.++.-
T Consensus 100 Git~~g~~Ly~ltw~~~~v~V~D~~T--l~~~~ti~~~~eG----wGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V 173 (268)
T 3nok_A 100 GLASDGERLYQLTWTEGLLFTWSGMP--PQRERTTRYSGEG----WGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQV 173 (268)
T ss_dssp EEEECSSCEEEEESSSCEEEEEETTT--TEEEEEEECSSCC----CCEEEETTEEEEECSSSEEEEECTTTCCEEEEEEC
T ss_pred EEEEeCCEEEEEEccCCEEEEEECCc--CcEEEEEeCCCce----eEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEe
Confidence 3455666665554 67888888654 3455555532222 2444789999988889999999986 455444432
Q ss_pred cc-ccccccEEEEEecCCcccccccceeEEEE-eCCCcEEEEEecCCCCccccccc-ccCCcceeccccCCceEEEEEcC
Q 003087 94 KH-LKVSLPIIGLIAQDETDVQRSCLCSFTVF-TSDGFLHQIEISQDPSASISSAS-ASSSGLTLRRQFPQNVICTDYHP 170 (849)
Q Consensus 94 ~~-~~~~~~V~~l~fs~~~~~~~s~~~~~~~~-s~Dg~v~lw~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~V~svafsP 170 (849)
.. ......++.+.+.++. +++. -.+..|.+.|..+++....+... +.....+.......--+.|||+|
T Consensus 174 ~~~g~~v~~lNeLe~~dG~---------lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp 244 (268)
T 3nok_A 174 KLRGQPVELINELECANGV---------IYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEP 244 (268)
T ss_dssp EETTEECCCEEEEEEETTE---------EEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECT
T ss_pred CCCCcccccccccEEeCCE---------EEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcC
Confidence 11 1101234455554332 2221 24567888888777654433300 00000000001112469999999
Q ss_pred CCceEEEEe
Q 003087 171 ELSLLSVVS 179 (849)
Q Consensus 171 dg~lLas~g 179 (849)
+++.|.+.|
T Consensus 245 ~~~rlfVTG 253 (268)
T 3nok_A 245 GSGRIFMTG 253 (268)
T ss_dssp TTCCEEEEE
T ss_pred CCCEEEEeC
Confidence 988777764
No 279
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=95.43 E-value=0.17 Score=56.36 Aligned_cols=101 Identities=9% Similarity=0.085 Sum_probs=66.4
Q ss_pred ceEEEEEcCCCCeEEEEeCCeEEEEecCCCCCcce----------eeeeec-----CCCCEEEEEECCC---CCEEEEEe
Q 003087 12 KQVSLFISPRGERVAVAAVNQVTILQKDDDYQEPC----------GIFNCT-----GLGASIYGAWSES---HDVLGIVD 73 (849)
Q Consensus 12 ~v~slafSPdG~~LAsas~~~i~iw~~~~~~~~~~----------~~~~~~-----~~~~v~~vafSPD---G~~LAs~~ 73 (849)
.|..+..||+|++||..++.+|.|-.+..++.... ..+..+ ....|..+-|.|- |..|++--
T Consensus 67 ~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLt 146 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLK 146 (452)
T ss_dssp TTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEE
T ss_pred ceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEe
Confidence 47789999999999999999998887653321111 122211 1467999999995 56899999
Q ss_pred CCCcEEEEecC-Cccc-eeccccccccc-----ccEEEEEecCCcc
Q 003087 74 DTHTVYFFKAN-GEEI-TRFTNKHLKVS-----LPIIGLIAQDETD 112 (849)
Q Consensus 74 ~dgtIrlWd~~-g~~~-~~l~~~~~~~~-----~~V~~l~fs~~~~ 112 (849)
.|++||+||+. +... ..+......++ ..|.+++|..++.
T Consensus 147 sD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~l 192 (452)
T 3pbp_A 147 EDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGL 192 (452)
T ss_dssp TTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSS
T ss_pred cCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCc
Confidence 99999999997 3221 12322111111 3577888876543
No 280
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=95.29 E-value=0.17 Score=60.32 Aligned_cols=74 Identities=12% Similarity=0.139 Sum_probs=45.3
Q ss_pred CCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCEEEEEEeCCcEEEEEecCCcccc---
Q 003087 249 TNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNILILARKSSIITMIDVLSGLKVK--- 325 (849)
Q Consensus 249 ~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~la~a~~dgti~lwdl~~~~~l~--- 325 (849)
.+|.|.-||+.+++. +++.+... .....+ ++ ..++.+.+++.||.|+.||..+++.+-
T Consensus 436 ~~g~l~A~D~~tG~~-~W~~~~~~---------------~~~~~~--~~-t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~ 496 (668)
T 1kv9_A 436 VSGALLAWDPVKQKA-AWKVPYPT---------------HWNGGT--LS-TAGNLVFQGTAAGQMHAYSADKGEALWQFE 496 (668)
T ss_dssp CEEEEEEEETTTTEE-EEEEEESS---------------SCCCCE--EE-ETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred ccceEEEEeCCCCcE-EEEccCCC---------------CCcCce--eE-eCCCEEEEECCcccchhhhhhcChhheEec
Confidence 348899999998854 34433110 000111 11 146677788899999999999998653
Q ss_pred cc-----CC---CCCCeEEEEEec
Q 003087 326 ET-----DP---KLRGHVFLLESK 341 (849)
Q Consensus 326 ~~-----~~---~~~g~~~~Le~~ 341 (849)
.. .| .++|+.|+..+.
T Consensus 497 ~~~~~~~~p~~~~~~G~~yva~~~ 520 (668)
T 1kv9_A 497 AQSGIVAAPMTFELAGRQYVAIMA 520 (668)
T ss_dssp CSSCCCSCCEEEEETTEEEEEEEE
T ss_pred CCCCcccCceEEEECCEEEEEEEe
Confidence 11 22 257887776554
No 281
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=95.26 E-value=0.61 Score=54.28 Aligned_cols=36 Identities=17% Similarity=0.141 Sum_probs=26.4
Q ss_pred ceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccc
Q 003087 233 PKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFA 269 (849)
Q Consensus 233 ~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~ 269 (849)
.+..+...|.+|..++.||.|+.||..+++. ++++.
T Consensus 467 ~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~-lw~~~ 502 (571)
T 2ad6_A 467 WGGTLYTKGGLVWYATLDGYLKALDNKDGKE-LWNFK 502 (571)
T ss_dssp CSBCEEETTTEEEEECTTSEEEEEETTTCCE-EEEEE
T ss_pred cceeEEECCCEEEEEcCCCeEEEEECCCCCE-EEEEe
Confidence 3344445677788899999999999998865 45543
No 282
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=95.24 E-value=2.2 Score=45.31 Aligned_cols=205 Identities=9% Similarity=-0.075 Sum_probs=106.3
Q ss_pred cceEEEEEcCCCCeEEEEe--CCeEEEEecCCCC-CcceeeeeecCCCCEEEEEECCCCCEE-EEEeCCCcEEEEecCCc
Q 003087 11 KKQVSLFISPRGERVAVAA--VNQVTILQKDDDY-QEPCGIFNCTGLGASIYGAWSESHDVL-GIVDDTHTVYFFKANGE 86 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas--~~~i~iw~~~~~~-~~~~~~~~~~~~~~v~~vafSPDG~~L-As~~~dgtIrlWd~~g~ 86 (849)
+.+..++|+|+++.|-.+. .+.|...+..+.. +.........+......+|+.+.++.| .+-..+++|.+.+..|+
T Consensus 30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~ 109 (316)
T 1ijq_A 30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 109 (316)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC
Confidence 4578999999887776654 4678777765310 011111111122334689998765555 55567789999999987
Q ss_pred cceecccccccccccEEEEEecC-CcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEE
Q 003087 87 EITRFTNKHLKVSLPIIGLIAQD-ETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVIC 165 (849)
Q Consensus 87 ~~~~l~~~~~~~~~~V~~l~fs~-~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~s 165 (849)
....+..... ..-.++++.| ++..-|+. ++..+.|...+... .....+. .... ..-+.
T Consensus 110 ~~~~~~~~~~---~~P~~iavdp~~g~ly~~d------~~~~~~I~~~~~dG-~~~~~~~----------~~~~-~~P~g 168 (316)
T 1ijq_A 110 KRKTLFRENG---SKPRAIVVDPVHGFMYWTD------WGTPAKIKKGGLNG-VDIYSLV----------TENI-QWPNG 168 (316)
T ss_dssp SEEEEEECTT---CCEEEEEEETTTTEEEEEE------CSSSCEEEEEETTS-CCEEEEE----------CSSC-SCEEE
T ss_pred ceEEEEECCC---CCcceEEeCCCCCEEEEEc------cCCCCeEEEEcCCC-CCeEEEE----------ECCC-CCceE
Confidence 6544432111 2346778765 33221210 11124555555431 1111110 0111 24689
Q ss_pred EEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEE
Q 003087 166 TDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVA 245 (849)
Q Consensus 166 vafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LA 245 (849)
++++|++..|..+.... + .|...++++. ....+.... + ....-..|++. .|.+..
T Consensus 169 la~d~~~~~lY~~D~~~----------~--~I~~~d~dg~-~~~~~~~~~---------~--~~~~P~giav~-~~~ly~ 223 (316)
T 1ijq_A 169 ITLDLLSGRLYWVDSKL----------H--SISSIDVNGG-NRKTILEDE---------K--RLAHPFSLAVF-EDKVFW 223 (316)
T ss_dssp EEEETTTTEEEEEETTT----------T--EEEEEETTSC-SCEEEEECT---------T--TTSSEEEEEEE-TTEEEE
T ss_pred EEEeccCCEEEEEECCC----------C--eEEEEecCCC-ceEEEeecC---------C--ccCCcEEEEEE-CCEEEE
Confidence 99999888887764432 1 3666666542 111221100 0 01123467773 455555
Q ss_pred EEeCCCcEEEEecCCC
Q 003087 246 TSDTNGCLYIFEMDKD 261 (849)
Q Consensus 246 s~s~Dgtv~LWd~~~~ 261 (849)
+-...+.|...+..++
T Consensus 224 ~d~~~~~V~~~~~~~g 239 (316)
T 1ijq_A 224 TDIINEAIFSANRLTG 239 (316)
T ss_dssp EETTTTEEEEEETTTC
T ss_pred EECCCCeEEEEeCCCC
Confidence 5556778888876544
No 283
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=95.18 E-value=1.8 Score=46.77 Aligned_cols=113 Identities=7% Similarity=0.027 Sum_probs=57.5
Q ss_pred CEEEEEECCCCCEEEEEeCCCcEEEEecCCcc--ceecccccccccccEEEEEecCCcccccccceeEEEEeC-C-----
Q 003087 56 ASIYGAWSESHDVLGIVDDTHTVYFFKANGEE--ITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTS-D----- 127 (849)
Q Consensus 56 ~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~~--~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~-D----- 127 (849)
.-+.++|.|||+++++ +.+|.|++++ +|+. +..+. ....-.....+|+|+|+-... ..+++... +
T Consensus 32 ~P~~ia~~pdG~l~V~-e~~g~I~~i~-~g~~~~~~~~~-v~~~g~~~p~gia~~pdf~~~----g~lYv~~~~~~~~~~ 104 (352)
T 2ism_A 32 VPWALAFLPDGGMLIA-ERPGRIRLFR-EGRLSTYAELS-VYHRGESGLLGLALHPRFPQE----PYVYAYRTVAEGGLR 104 (352)
T ss_dssp CEEEEEECTTSCEEEE-ETTTEEEEEE-TTEEEEEEECC-CCCSTTCSEEEEEECTTTTTS----CEEEEEEEECTTSSE
T ss_pred CceEEEEcCCCeEEEE-eCCCeEEEEE-CCCccEeecce-EeecCCCCceeEEECCCCCCC----CEEEEEEecCCCCCc
Confidence 3468999999996655 5669999998 6642 11111 000001246789998862110 12333322 1
Q ss_pred CcEEEEEecCCCCcccccccccCCcceec--cccCCceEEEEEcCCCceEEEEec
Q 003087 128 GFLHQIEISQDPSASISSASASSSGLTLR--RQFPQNVICTDYHPELSLLSVVSN 180 (849)
Q Consensus 128 g~v~lw~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~V~svafsPdg~lLas~g~ 180 (849)
+.|..++...+.... .+..+ ..+. .........++|.|||.+.++.|.
T Consensus 105 ~~v~r~~~~~~~~~~-~~~l~----~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~ 154 (352)
T 2ism_A 105 NQVVRLRHLGERGVL-DRVVL----DGIPARPHGLHSGGRIAFGPDGMLYVTTGE 154 (352)
T ss_dssp EEEEEEEECSSCEEE-EEEEE----EEECCCTTCCCCCCCEEECTTSCEEEECCC
T ss_pred cEEEEEEeCCCCcCc-eEEEE----EeCCCCCCCCcCCceEEECCCCCEEEEECC
Confidence 556666665332100 00000 0011 010112468999999987766543
No 284
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=95.11 E-value=1.3 Score=47.74 Aligned_cols=152 Identities=5% Similarity=0.054 Sum_probs=82.3
Q ss_pred ceEEEEEcCCCCeEEEEe--CCeEEEEecCCCCCcceeeeee-c--CCC--CEEEEEE---CCCCCEEEEEeC-------
Q 003087 12 KQVSLFISPRGERVAVAA--VNQVTILQKDDDYQEPCGIFNC-T--GLG--ASIYGAW---SESHDVLGIVDD------- 74 (849)
Q Consensus 12 ~v~slafSPdG~~LAsas--~~~i~iw~~~~~~~~~~~~~~~-~--~~~--~v~~vaf---SPDG~~LAs~~~------- 74 (849)
...+++|.++..++-.++ .++|..|+..++....+ .+.. . +.+ ....|.| -|+|++++++..
T Consensus 14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~ 92 (334)
T 2p9w_A 14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFA 92 (334)
T ss_dssp CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTT
T ss_pred CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccc
Confidence 345678877544444444 68999998753321111 1110 0 222 3468999 589999997552
Q ss_pred ------CCcEEEEecC----Cccceecccc--ccc-------ccccEEEEEecCCccc--ccccc-eeEEEEeCCCc-EE
Q 003087 75 ------THTVYFFKAN----GEEITRFTNK--HLK-------VSLPIIGLIAQDETDV--QRSCL-CSFTVFTSDGF-LH 131 (849)
Q Consensus 75 ------dgtIrlWd~~----g~~~~~l~~~--~~~-------~~~~V~~l~fs~~~~~--~~s~~-~~~~~~s~Dg~-v~ 131 (849)
+..|..+|+. |+.+....-. ..+ .......|+..+++.+ ..+.. ..++-.+.||. +.
T Consensus 93 g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~ 172 (334)
T 2p9w_A 93 DQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVS 172 (334)
T ss_dssp SCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEE
T ss_pred ccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEe
Confidence 6778899988 6655433211 000 0113567777664421 12211 22444455554 44
Q ss_pred EEEecCCCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecC
Q 003087 132 QIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNT 181 (849)
Q Consensus 132 lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d 181 (849)
.|....... ....+.+.++|+|||++|++....
T Consensus 173 ~~~~~~~~~-----------------~~~~G~nGIv~~pdg~~Liv~~~~ 205 (334)
T 2p9w_A 173 TFAWESGNG-----------------GQRPGYSGITFDPHSNKLIAFGGP 205 (334)
T ss_dssp EEEECCCCS-----------------SSCCSCSEEEEETTTTEEEEESSS
T ss_pred eeeecCCCc-----------------ccccCcceEEEeCCCCEEEEEcCC
Confidence 454321100 111257899999999999887653
No 285
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=95.10 E-value=3.2 Score=45.76 Aligned_cols=205 Identities=9% Similarity=-0.080 Sum_probs=106.3
Q ss_pred cceEEEEEcCCCCeEEEEe--CCeEEEEecCCCCC-cceeeeeecCCCCEEEEEECCCCC-EEEEEeCCCcEEEEecCCc
Q 003087 11 KKQVSLFISPRGERVAVAA--VNQVTILQKDDDYQ-EPCGIFNCTGLGASIYGAWSESHD-VLGIVDDTHTVYFFKANGE 86 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas--~~~i~iw~~~~~~~-~~~~~~~~~~~~~v~~vafSPDG~-~LAs~~~dgtIrlWd~~g~ 86 (849)
+.+..|+|+|+++.|-.+. .+.|..++..+... .........+......||+.+.++ +..+-...+.|.+.+++|.
T Consensus 112 ~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~ 191 (400)
T 3p5b_L 112 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 191 (400)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTC
T ss_pred CcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCC
Confidence 5688999999877775553 46777777543110 001111111234567899998544 4455556789999999987
Q ss_pred cceecccccccccccEEEEEecC-CcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEE
Q 003087 87 EITRFTNKHLKVSLPIIGLIAQD-ETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVIC 165 (849)
Q Consensus 87 ~~~~l~~~~~~~~~~V~~l~fs~-~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~s 165 (849)
....+..... ..-.+|++.| ++..-|+ -++..+.|...+..... ...+ ..... ..-+.
T Consensus 192 ~~~~l~~~~~---~~P~~iavdp~~g~ly~t------d~~~~~~I~~~~~dG~~-~~~~----------~~~~l-~~P~g 250 (400)
T 3p5b_L 192 KRKTLFRENG---SKPRAIVVDPVHGFMYWT------DWGTPAKIKKGGLNGVD-IYSL----------VTENI-QWPNG 250 (400)
T ss_dssp SEEEEEECSS---CCEEEEEEETTTTEEEEE------ECSSSCCEEEEETTSCS-CEEE----------ECSSC-SCEEE
T ss_pred ceEEEEeCCC---CCcceEEEecccCeEEEE------eCCCCCEEEEEeCCCCc-cEEE----------EECCC-CceEE
Confidence 6554433221 2346788766 3322221 11223556555543211 1111 01111 24689
Q ss_pred EEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEE
Q 003087 166 TDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVA 245 (849)
Q Consensus 166 vafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LA 245 (849)
++++|++..|..+-... ..|...++++.. ...+... . + ....-..|++ ..+.+..
T Consensus 251 lavd~~~~~lY~aD~~~------------~~I~~~d~dG~~-~~~~~~~--------~-~--~l~~P~gl~v-~~~~lyw 305 (400)
T 3p5b_L 251 ITLDLLSGRLYWVDSKL------------HSISSIDVNGGN-RKTILED--------E-K--RLAHPFSLAV-FEDKVFW 305 (400)
T ss_dssp EEEETTTTEEEEEETTT------------TEEEEEETTSCC-CEEEEEC--------S-S--TTSSEEEEEE-ETTEEEE
T ss_pred EEEEeCCCEEEEEECCC------------CEEEEEeCCCCc-cEEEEeC--------C-C--CCCCCEEEEE-eCCEEEE
Confidence 99999988888774432 125555554421 1112110 0 0 0112235666 2444455
Q ss_pred EEeCCCcEEEEecCCC
Q 003087 246 TSDTNGCLYIFEMDKD 261 (849)
Q Consensus 246 s~s~Dgtv~LWd~~~~ 261 (849)
+-...+.|..++..++
T Consensus 306 td~~~~~V~~~~~~~G 321 (400)
T 3p5b_L 306 TDIINEAIFSANRLTG 321 (400)
T ss_dssp EESSSCSEEEEESSSC
T ss_pred ecCCCCeEEEEEcCCC
Confidence 5555678888875554
No 286
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=95.10 E-value=1.3 Score=46.22 Aligned_cols=196 Identities=8% Similarity=-0.013 Sum_probs=101.0
Q ss_pred cceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecC-Cccc
Q 003087 11 KKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKAN-GEEI 88 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~-g~~~ 88 (849)
...-.|.|+ ++++..+.+ ++.|++.|..++ +..... ......-..+++.. +++.+..-.++++.++|.. ++.+
T Consensus 55 ~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tg--kv~~~~-l~~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~ 129 (268)
T 3nok_A 55 AFTQGLVFH-QGHFFESTGHQGTLRQLSLESA--QPVWME-RLGNIFAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQRE 129 (268)
T ss_dssp CCEEEEEEE-TTEEEEEETTTTEEEECCSSCS--SCSEEE-ECTTCCEEEEEECS-SCEEEEESSSCEEEEEETTTTEEE
T ss_pred cccceEEEE-CCEEEEEcCCCCEEEEEECCCC--cEEeEE-CCCCcceeEEEEeC-CEEEEEEccCCEEEEEECCcCcEE
Confidence 345678887 355555555 468888887653 444444 32222224466643 3555556678999999986 6666
Q ss_pred eecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEE
Q 003087 89 TRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDY 168 (849)
Q Consensus 89 ~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svaf 168 (849)
.++.-.. .=+++++ ++ ..+++...++.|+.+|..+.+....+. ....+..-..++.+.|
T Consensus 130 ~ti~~~~-----eGwGLt~--Dg-------~~L~vSdGs~~l~~iDp~T~~v~~~I~-------V~~~g~~v~~lNeLe~ 188 (268)
T 3nok_A 130 RTTRYSG-----EGWGLCY--WN-------GKLVRSDGGTMLTFHEPDGFALVGAVQ-------VKLRGQPVELINELEC 188 (268)
T ss_dssp EEEECSS-----CCCCEEE--ET-------TEEEEECSSSEEEEECTTTCCEEEEEE-------CEETTEECCCEEEEEE
T ss_pred EEEeCCC-----ceeEEec--CC-------CEEEEECCCCEEEEEcCCCCeEEEEEE-------eCCCCcccccccccEE
Confidence 5554321 1123332 11 245565668889999987655433222 0111111124678888
Q ss_pred cCCCceEEEEecCCCCccccC-CCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEE
Q 003087 169 HPELSLLSVVSNTDTSSLTSS-GNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATS 247 (849)
Q Consensus 169 sPdg~lLas~g~d~t~~~~~~-~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~ 247 (849)
. +|++.|..-.++ .+.-| ..+|. .+..+++.+- .. .... .. .. -.+-.+.||++|+++.|...
T Consensus 189 ~-dG~lyanvw~s~--~I~vIDp~TG~-V~~~Idl~~L------~~-~~~~--~~-~~--~~~vlNGIA~dp~~~rlfVT 252 (268)
T 3nok_A 189 A-NGVIYANIWHSS--DVLEIDPATGT-VVGVIDASAL------TR-AVAG--QV-TN--PEAVLNGIAVEPGSGRIFMT 252 (268)
T ss_dssp E-TTEEEEEETTCS--EEEEECTTTCB-EEEEEECHHH------HH-HHTT--TC-CC--TTCCEEEEEECTTTCCEEEE
T ss_pred e-CCEEEEEECCCC--eEEEEeCCCCc-EEEEEECCCC------cc-cccc--cc-cC--cCCceEEEEEcCCCCEEEEe
Confidence 8 887665432232 33323 33443 2344443321 00 0000 00 00 11345689999998877665
Q ss_pred e
Q 003087 248 D 248 (849)
Q Consensus 248 s 248 (849)
+
T Consensus 253 G 253 (268)
T 3nok_A 253 G 253 (268)
T ss_dssp E
T ss_pred C
Confidence 4
No 287
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=94.96 E-value=0.51 Score=54.94 Aligned_cols=89 Identities=9% Similarity=0.078 Sum_probs=55.9
Q ss_pred ceEEEccCCCEEEEEe-------------------------------------CCCcEEEEecCCCcccccccccccccc
Q 003087 233 PKVLISPQGKFVATSD-------------------------------------TNGCLYIFEMDKDNFSLSKFACGERFD 275 (849)
Q Consensus 233 ~~vafSPDG~~LAs~s-------------------------------------~Dgtv~LWd~~~~~~~l~~~~~~~~~~ 275 (849)
..++|+|++.+|.... .+|.|..||+.+++. ++++....
T Consensus 389 ~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~-~W~~~~~~--- 464 (571)
T 2ad6_A 389 GVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKA-KWTKWEKF--- 464 (571)
T ss_dssp CBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCE-EEEEEESS---
T ss_pred CCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCE-EEEecCCC---
Confidence 3689999988887754 357888899887754 33332110
Q ss_pred cccccccCCCCCCCCCCcEEEEEecCCEEEEEEeCCcEEEEEecCCcccc----c----cCCC---CCCeEEEEEe
Q 003087 276 LQVADSLFDGRTKPISDITDFAWWSDNILILARKSSIITMIDVLSGLKVK----E----TDPK---LRGHVFLLES 340 (849)
Q Consensus 276 ~~~~~~l~~~~~~~~~~v~~vaws~D~~la~a~~dgti~lwdl~~~~~l~----~----~~~~---~~g~~~~Le~ 340 (849)
.....+. -..++.+.+++.||.|..+|..+|+.+- + .+|. .+|++|+...
T Consensus 465 ------------~~~~~~~---~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv~~~ 525 (571)
T 2ad6_A 465 ------------AAWGGTL---YTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIGSM 525 (571)
T ss_dssp ------------CCCSBCE---EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred ------------CccceeE---EECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEEEEE
Confidence 0001111 1246777788899999999999998542 1 1232 4777776443
No 288
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=94.91 E-value=0.29 Score=50.57 Aligned_cols=151 Identities=11% Similarity=0.011 Sum_probs=80.9
Q ss_pred EEEEEcCCCCeEEEEe--CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecC-Ccccee
Q 003087 14 VSLFISPRGERVAVAA--VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKAN-GEEITR 90 (849)
Q Consensus 14 ~slafSPdG~~LAsas--~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~-g~~~~~ 90 (849)
....++++|+.|-... ++.+.++|..+ .+.++++...+.+ .++++||+.|..++.+++|+++|.. .+.+.+
T Consensus 66 fgeGi~~~~~~ly~ltw~~~~v~v~D~~t--l~~~~ti~~~~~G----wglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~ 139 (243)
T 3mbr_X 66 FGAGIVAWRDRLIQLTWRNHEGFVYDLAT--LTPRARFRYPGEG----WALTSDDSHLYMSDGTAVIRKLDPDTLQQVGS 139 (243)
T ss_dssp CEEEEEEETTEEEEEESSSSEEEEEETTT--TEEEEEEECSSCC----CEEEECSSCEEEECSSSEEEEECTTTCCEEEE
T ss_pred ceeEEEEeCCEEEEEEeeCCEEEEEECCc--CcEEEEEeCCCCc----eEEeeCCCEEEEECCCCeEEEEeCCCCeEEEE
Confidence 3344555677775554 67888888654 3455665532222 3444789988888889999999986 444444
Q ss_pred ccccccc-ccccEEEEEecCCcccccccceeEEEE-eCCCcEEEEEecCCCCccccccc-ccCCcceeccccCCceEEEE
Q 003087 91 FTNKHLK-VSLPIIGLIAQDETDVQRSCLCSFTVF-TSDGFLHQIEISQDPSASISSAS-ASSSGLTLRRQFPQNVICTD 167 (849)
Q Consensus 91 l~~~~~~-~~~~V~~l~fs~~~~~~~s~~~~~~~~-s~Dg~v~lw~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~V~sva 167 (849)
+.-...+ .-..++.+.+.++. ++.. -.+..|.+.|..+++....+... +.............--++||
T Consensus 140 I~V~~~g~~~~~lNeLe~~~G~---------lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA 210 (243)
T 3mbr_X 140 IKVTAGGRPLDNLNELEWVNGE---------LLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIA 210 (243)
T ss_dssp EECEETTEECCCEEEEEEETTE---------EEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEE
T ss_pred EEEccCCcccccceeeEEeCCE---------EEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEE
Confidence 4321100 00123344443222 2211 13456777777776654332200 00000000000112469999
Q ss_pred EcCCCceEEEEe
Q 003087 168 YHPELSLLSVVS 179 (849)
Q Consensus 168 fsPdg~lLas~g 179 (849)
|+|+++.|.+.|
T Consensus 211 ~d~~~~~lfVTG 222 (243)
T 3mbr_X 211 FDAEHDRLFVTG 222 (243)
T ss_dssp EETTTTEEEEEE
T ss_pred EcCCCCEEEEEC
Confidence 999988887765
No 289
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=94.84 E-value=0.44 Score=51.90 Aligned_cols=115 Identities=10% Similarity=0.026 Sum_probs=58.6
Q ss_pred CEEEEEECCCCCEEEEEeCCCcEEEEecCCc-cceecccccccccccEEEEEecCCcccccccceeEEEEeC----C---
Q 003087 56 ASIYGAWSESHDVLGIVDDTHTVYFFKANGE-EITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTS----D--- 127 (849)
Q Consensus 56 ~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~-~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~----D--- 127 (849)
.-+.++|.|||+++++ +.+|.|++++.+|+ .+..+. ....-.....+|+|.|+-... ..|++... +
T Consensus 30 ~P~~ia~~pdG~l~V~-e~~g~I~~~d~~G~~~~~~~~-v~~~g~~g~~gia~~pdf~~~----g~lyv~~~~~~~~~~~ 103 (354)
T 3a9g_A 30 VPWSIAPLGGGRYLVT-ERPGRLVLISPSGKKLVASFD-VANVGEAGLLGLALHPEFPKK----SWVYLYASYFAEGGHI 103 (354)
T ss_dssp CEEEEEEEETTEEEEE-ETTTEEEEECSSCEEEEEECC-CCCSTTCSEEEEEECTTTTTS----CEEEEEEEEECGGGCE
T ss_pred CCeEEEEcCCCeEEEE-eCCCEEEEEeCCCceEeeccc-eeecCCCceeeEEeCCCCCcC----CEEEEEEeccCCCCCc
Confidence 4578999999985555 56699999987775 222211 000001246789998852111 12333322 2
Q ss_pred -CcEEEEEecCCC-CcccccccccCCcceeccccCCceEEEEEcCCCceEEEEec
Q 003087 128 -GFLHQIEISQDP-SASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSN 180 (849)
Q Consensus 128 -g~v~lw~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~ 180 (849)
+.|..++...+. .....+..+ ..+.....+....++|.|||.+.++.|.
T Consensus 104 ~~~v~r~~~~~~~~~~~~~~~l~----~~~~~~~~h~~~~l~~~pDG~Lyvt~G~ 154 (354)
T 3a9g_A 104 RNRVIRGRLDGSTFKLKEVKTLI----DGIPGAYIHNGGRIRFGPDGMLYITTGD 154 (354)
T ss_dssp EEEEEEEEECSSSCCEEEEEEEE----EEEECCSSCCCCCEEECTTSCEEEECCC
T ss_pred ceEEEEEEECCCCcCcCccEEEE----EcCCCCCCcCCceEEECCCCcEEEEECC
Confidence 455556654331 000000000 0011111113477999999997766544
No 290
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=94.83 E-value=0.42 Score=53.51 Aligned_cols=155 Identities=14% Similarity=0.127 Sum_probs=82.9
Q ss_pred EEEEECC-CCCEEEEEeCCCcEEEEecCCccceecccccccccccEEEEEecCCcccccccceeEEEEeC-CCc---EEE
Q 003087 58 IYGAWSE-SHDVLGIVDDTHTVYFFKANGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTS-DGF---LHQ 132 (849)
Q Consensus 58 ~~vafSP-DG~~LAs~~~dgtIrlWd~~g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~-Dg~---v~l 132 (849)
..|+|+| ++..|-+++..+.|+.+|..+..+..+... ...-.+|+|++++.. +++... ++. ..+
T Consensus 140 ~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~----~~~P~~ia~d~~G~~-------lyvad~~~~~~~~~v~ 208 (430)
T 3tc9_A 140 VWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSG----LSKVRTICWTHEADS-------MIITNDQNNNDRPNNY 208 (430)
T ss_dssp CEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECC----CSCEEEEEECTTSSE-------EEEEECCSCTTSEEEE
T ss_pred CEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecC----CCCcceEEEeCCCCE-------EEEEeCCCCcccceEE
Confidence 5899999 466666666558899999987665555331 134568898775531 333332 111 122
Q ss_pred EEecCCCCcccccccccCCcceeccccCCceEEEEEcC-CCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccc
Q 003087 133 IEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHP-ELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQL 211 (849)
Q Consensus 133 w~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsP-dg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l 211 (849)
|....+..... ..+. .. ....+++++| +|.+.++ .... + .|..++..+.. ...+
T Consensus 209 ~~~~~g~~~~~---------~~l~-~~-~~p~giavdp~~g~lyv~-d~~~----------~--~V~~~~~~~~~-~~~~ 263 (430)
T 3tc9_A 209 ILTRESGFKVI---------TELT-KG-QNCNGAETHPINGELYFN-SWNA----------G--QVFRYDFTTQE-TTPL 263 (430)
T ss_dssp EEEGGGTSCSE---------EEEE-EC-SSCCCEEECTTTCCEEEE-ETTT----------T--EEEEEETTTTE-EEEE
T ss_pred EEeCCCceeee---------eeec-cC-CCceEEEEeCCCCEEEEE-ECCC----------C--EEEEEECCCCc-EEEE
Confidence 22222222100 0111 11 2357789999 6776544 3322 1 25555554321 0011
Q ss_pred eeccccceeeccCCCccccccceEEEccCCCEEEEE-eCCCcEEEEecCC
Q 003087 212 YTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATS-DTNGCLYIFEMDK 260 (849)
Q Consensus 212 ~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~-s~Dgtv~LWd~~~ 260 (849)
.. . .+ ...-..|+|+|||++|..+ ...+.|..++.++
T Consensus 264 ~~--------~-~~---~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 264 FT--------I-QD---SGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp EE--------C-SS---SSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred EE--------c-CC---CCcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence 10 0 00 1234579999999955544 4678899988764
No 291
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=94.83 E-value=2.6 Score=50.95 Aligned_cols=230 Identities=8% Similarity=-0.041 Sum_probs=113.5
Q ss_pred eEEEEeCCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCC-CEEEEEeCCCcEEEEecCCcc----ceecccccccc
Q 003087 24 RVAVAAVNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESH-DVLGIVDDTHTVYFFKANGEE----ITRFTNKHLKV 98 (849)
Q Consensus 24 ~LAsas~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG-~~LAs~~~dgtIrlWd~~g~~----~~~l~~~~~~~ 98 (849)
+|..+....|+..+.... . ...+ ..+...+..|+|.+.+ ++..+-...+.|+.+++.|.. ...+.....
T Consensus 397 ~Ll~an~~~Ir~i~l~~~--~-~~~l-~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l-- 470 (791)
T 3m0c_C 397 YLFFTNRHEVRKMTLDRS--E-YTSL-IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI-- 470 (791)
T ss_dssp EEEEECBSSEEEECTTSC--C-CEEE-ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSC--
T ss_pred ccccccccceeEeeccCC--c-ceee-ecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCC--
Confidence 344444556666555422 1 1111 1234567899999954 455555567889999988632 122211111
Q ss_pred cccEEEEEecCCcccccccceeEEEE-eCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEcCCCceEEE
Q 003087 99 SLPIIGLIAQDETDVQRSCLCSFTVF-TSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSV 177 (849)
Q Consensus 99 ~~~V~~l~fs~~~~~~~s~~~~~~~~-s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas 177 (849)
....+|++.+.+. .|+.. ...+.|.+.++.... ...+ +.+.. .....|+++|.+..|..
T Consensus 471 -~~P~GLAvD~~~~-------~LY~tD~~~~~I~v~~ldG~~-~~~l----------~~~~l-~~P~gIaVDp~~g~LYw 530 (791)
T 3m0c_C 471 -QAPDGLAVDWIHS-------NIYWTDSVLGTVSVADTKGVK-RKTL----------FRENG-SKPRAIVVDPVHGFMYW 530 (791)
T ss_dssp -SCCCEEEEETTTT-------EEEEEETTTTEEEEEETTSSS-EEEE----------EECTT-CCEEEEEEETTTTEEEE
T ss_pred -CCcceeeeeecCC-------cEEEEecCCCeEEEEeCCCCe-EEEE----------EeCCC-CCcceEEEecCCCCEEE
Confidence 1234666643210 12222 455677777654221 1111 01111 23789999998666666
Q ss_pred EecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEEeC-CCcEEEE
Q 003087 178 VSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDT-NGCLYIF 256 (849)
Q Consensus 178 ~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~-Dgtv~LW 256 (849)
+..... + .|..-++++.. ...+... .......|+++|+++.|..++. .+.|...
T Consensus 531 tD~g~~---------~--~I~~~~~dG~~-~~~lv~~-------------~l~~P~GLavD~~~~~LYwaD~~~~~I~~~ 585 (791)
T 3m0c_C 531 TDWGTP---------A--KIKKGGLNGVD-IYSLVTE-------------NIQWPNGITLDLLSGRLYWVDSKLHSISSI 585 (791)
T ss_dssp EECSSS---------C--EEEEEETTSCC-EEEEECS-------------SCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred ecCCCC---------C--eEEEEecCCCc-eEEEEeC-------------CCCCceEEEEecCCCeEEEEeCCCCcEEEE
Confidence 543210 1 24444444321 1111110 1124557999988888887765 4678888
Q ss_pred ecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCEEEEEE-eCCcEEEEEecCCc
Q 003087 257 EMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNILILAR-KSSIITMIDVLSGL 322 (849)
Q Consensus 257 d~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~la~a~-~dgti~lwdl~~~~ 322 (849)
++++... ..+... ......+..|+... +.|..+. ..+.|...+..+|+
T Consensus 586 d~dG~~~--~~v~~~---------------~~~l~~P~glav~~-~~lYwtD~~~~~I~~~dk~tG~ 634 (791)
T 3m0c_C 586 DVNGGNR--KTILED---------------EKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTGS 634 (791)
T ss_dssp ETTSCSC--EEEEEC---------------TTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTCC
T ss_pred ecCCCce--EEEecC---------------CCccCCCCEEEEeC-CEEEEEECCCCEEEEEeCCCCc
Confidence 8876532 222210 01123455666533 3554443 55677777765654
No 292
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=94.74 E-value=1.1 Score=49.05 Aligned_cols=176 Identities=11% Similarity=0.047 Sum_probs=91.7
Q ss_pred EEEEEECCCCCEEEEE------------eCCCcEEEEecCCc--cceec--ccc-cccccccEEEEEecCCcccccccce
Q 003087 57 SIYGAWSESHDVLGIV------------DDTHTVYFFKANGE--EITRF--TNK-HLKVSLPIIGLIAQDETDVQRSCLC 119 (849)
Q Consensus 57 v~~vafSPDG~~LAs~------------~~dgtIrlWd~~g~--~~~~l--~~~-~~~~~~~V~~l~fs~~~~~~~s~~~ 119 (849)
-..++..|+|..+.++ ..+|.|.++|.+.. ....+ .+. .......-.++.+.++.. + ..
T Consensus 52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~d--g--~~ 127 (355)
T 3sre_A 52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDD--N--TV 127 (355)
T ss_dssp CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTT--C--CE
T ss_pred cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCC--C--cE
Confidence 4577889999887776 27899999998621 22222 111 000112345666533210 0 01
Q ss_pred eEEEEe---CCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCC---ccccC-CCC
Q 003087 120 SFTVFT---SDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTS---SLTSS-GNS 192 (849)
Q Consensus 120 ~~~~~s---~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~---~~~~~-~~~ 192 (849)
.++++. .+.+|.+|++..+...... ..++.+..-...+.+++.|+|++.++...--|. +.+.. ...
T Consensus 128 ~L~Vvnh~~~~s~ielf~~d~~~~~~~~-------~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~ 200 (355)
T 3sre_A 128 YLLVVNHPGSSSTVEVFKFQEEEKSLLH-------LKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGL 200 (355)
T ss_dssp EEEEEECSTTCCEEEEEEEETTTTEEEE-------EEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTC
T ss_pred EEEEEECCCCCCeEEEEEEECCCCEEEE-------EeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccC
Confidence 355543 2567888888764321111 112332222358999999999987654211000 00000 000
Q ss_pred CCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEEe-CCCcEEEEecCC
Q 003087 193 GPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSD-TNGCLYIFEMDK 260 (849)
Q Consensus 193 G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s-~Dgtv~LWd~~~ 260 (849)
. .=++|+++.+ ....+.. + + ..-+.|+|||||++|..++ ..++|..|++..
T Consensus 201 ~--~g~vyr~d~~-~~~~~~~----~-l---------~~pNGia~spDg~~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 201 A--WSFVTYYSPN-DVRVVAE----G-F---------DFANGINISPDGKYVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp C--CEEEEEECTT-CCEEEEE----E-E---------SSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred C--ccEEEEEECC-eEEEeec----C-C---------cccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence 1 1256666653 1111111 1 1 1235699999999888776 478899998864
No 293
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=94.62 E-value=1.9 Score=48.22 Aligned_cols=114 Identities=6% Similarity=0.036 Sum_probs=62.0
Q ss_pred cceEEEEEcCCCCeEEEEeCC----e-EEEEecCCCCCcceeeeeecCCCCEEEEEECC-CCCEEEEEeCCCcEEEEecC
Q 003087 11 KKQVSLFISPRGERVAVAAVN----Q-VTILQKDDDYQEPCGIFNCTGLGASIYGAWSE-SHDVLGIVDDTHTVYFFKAN 84 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas~~----~-i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSP-DG~~LAs~~~dgtIrlWd~~ 84 (849)
.....|+|+|||++.++-..+ . +...+........ .... . ...-..+++.| +|.+.++-..++.|+.++..
T Consensus 182 ~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~-~~~~-~-~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~ 258 (433)
T 4hw6_A 182 GQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTER-LSLC-N-ARGAKTCAVHPQNGKIYYTRYHHAMISSYDPA 258 (433)
T ss_dssp SCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCE-EEEE-E-CSSBCCCEECTTTCCEEECBTTCSEEEEECTT
T ss_pred CCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeecc-cccc-c-cCCCCEEEEeCCCCeEEEEECCCCEEEEEECC
Confidence 458899999999955554322 2 2222322211110 0111 1 12235689999 78777776678899999987
Q ss_pred -CccceecccccccccccEEEEEecCCcccccccceeEEEE-eCCCcEEEEEec
Q 003087 85 -GEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVF-TSDGFLHQIEIS 136 (849)
Q Consensus 85 -g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~-s~Dg~v~lw~~~ 136 (849)
|.....+.... . ...-.+|+|+|++.. ++++ ...+.|+.++..
T Consensus 259 ~g~~~~~~~~~~-~-~~~~~~ia~dpdG~~-------LYvad~~~~~I~~~~~d 303 (433)
T 4hw6_A 259 TGTLTEEEVMMD-T-KGSNFHIVWHPTGDW-------AYIIYNGKHCIYRVDYN 303 (433)
T ss_dssp TCCEEEEEEECS-C-CSSCEEEEECTTSSE-------EEEEETTTTEEEEEEBC
T ss_pred CCeEEEEEeccC-C-CCCcccEEEeCCCCE-------EEEEeCCCCEEEEEeCC
Confidence 54312222111 1 112246888886531 3332 445677777654
No 294
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=94.55 E-value=0.63 Score=50.69 Aligned_cols=76 Identities=14% Similarity=0.110 Sum_probs=46.3
Q ss_pred ccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeee---ecCCCCEEEEEECCC----CCEEEEEe--CCCcEE
Q 003087 10 TKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFN---CTGLGASIYGAWSES----HDVLGIVD--DTHTVY 79 (849)
Q Consensus 10 ~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~---~~~~~~v~~vafSPD----G~~LAs~~--~dgtIr 79 (849)
....+.++|.|||+++++-. .+.|.+++..++...++.... ..+......|||+|| |.+.++-+ .++.|.
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~ 110 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV 110 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEE
Confidence 36678999999999888776 688888764432211221111 123456789999996 66655422 334444
Q ss_pred EEecCC
Q 003087 80 FFKANG 85 (849)
Q Consensus 80 lWd~~g 85 (849)
-|...+
T Consensus 111 R~~~~~ 116 (347)
T 3das_A 111 RMLYDE 116 (347)
T ss_dssp EEEBCT
T ss_pred EEEeCC
Confidence 455544
No 295
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=94.53 E-value=0.29 Score=49.71 Aligned_cols=146 Identities=10% Similarity=0.046 Sum_probs=78.2
Q ss_pred cceEEEEEcCCCCeEEEEeCCeEEEEecCCCC---Ccce--eeeee-cCCCCEEEEEECCCCCEEEEEeCCCcEEEEec-
Q 003087 11 KKQVSLFISPRGERVAVAAVNQVTILQKDDDY---QEPC--GIFNC-TGLGASIYGAWSESHDVLGIVDDTHTVYFFKA- 83 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas~~~i~iw~~~~~~---~~~~--~~~~~-~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~- 83 (849)
..+..++|+|||.+-|+ +++. ||...... +.-. .+... .+-..+..+.|-|+|.+.|+ .||.|+=|+.
T Consensus 41 ~~~~~laf~P~G~LYaV-~~G~--Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP 115 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV-LNDK--IYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPP 115 (236)
T ss_dssp TTCSEEEECTTSCEEEE-ETTE--EEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred ccceeEEECCCccEEEE-eCCe--EEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence 45779999999999998 6664 55533211 0000 11111 12223579999999999999 5599988876
Q ss_pred -CCccceeccccccccc----ccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceec-c
Q 003087 84 -NGEEITRFTNKHLKVS----LPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLR-R 157 (849)
Q Consensus 84 -~g~~~~~l~~~~~~~~----~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~-~ 157 (849)
++.. +.......+. ..+..|+|.|++. ++.++ ||.+.-+...++.....+. ....+. +
T Consensus 116 ~~~~~--~Wl~~a~~vg~~gw~~~~~lff~p~G~--------Lyav~-dg~lyr~~~P~~~~~~wl~-----~~~~~g~~ 179 (236)
T 1tl2_A 116 QSDTD--NWIARATEVGSGGWSGFKFLFFHPNGY--------LYAVH-GQQFYKALPPVSNQDNWLA-----RATKIGQG 179 (236)
T ss_dssp CSTTC--CHHHHSEEEECSSGGGEEEEEECTTSC--------EEEEE-TTEEEEECCCSSTTCCHHH-----HCEEEESS
T ss_pred cCCCC--ceeccccEeccCCCCceEEEEECCCce--------EEEEe-CCcEEecCCCCCCCccccc-----ccceeccC
Confidence 3322 1111111110 2467788877664 33446 8875432222112111111 011111 1
Q ss_pred ccCCceEEEEEcCCCceEEEE
Q 003087 158 QFPQNVICTDYHPELSLLSVV 178 (849)
Q Consensus 158 ~~~~~V~svafsPdg~lLas~ 178 (849)
+. +.-.-+.|.|+|.+.++.
T Consensus 180 g~-~~yr~l~f~~~G~l~~v~ 199 (236)
T 1tl2_A 180 GW-DTFKFLFFSSVGTLFGVQ 199 (236)
T ss_dssp SG-GGEEEEEECTTSCEEEEE
T ss_pred Cc-ceEEEEEECCCCcEEEEe
Confidence 11 124557799999998765
No 296
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=94.40 E-value=0.16 Score=60.89 Aligned_cols=203 Identities=9% Similarity=-0.023 Sum_probs=100.4
Q ss_pred CCEEEEEECCCCCEEEEEe-CCCcEEEEecCC----ccceecccccccccccEEEEEecC-CcccccccceeEEEE-eCC
Q 003087 55 GASIYGAWSESHDVLGIVD-DTHTVYFFKANG----EEITRFTNKHLKVSLPIIGLIAQD-ETDVQRSCLCSFTVF-TSD 127 (849)
Q Consensus 55 ~~v~~vafSPDG~~LAs~~-~dgtIrlWd~~g----~~~~~l~~~~~~~~~~V~~l~fs~-~~~~~~s~~~~~~~~-s~D 127 (849)
.....|+|+|+++.|-.++ ..+.|+.+++.| .....+..... ....+|++.+ ++. |++. ...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~---~~P~glavD~~~g~--------LY~tD~~~ 474 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI---QAPDGLAVDWIHSN--------IYWTDSVL 474 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC-----CCCEECCCSSSB--------CEECCTTT
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCC---CCcceEEEEeeCCc--------EEEEeccC
Confidence 3456899999777766654 457899999876 22222211110 1123566542 222 2221 345
Q ss_pred CcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcC
Q 003087 128 GFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLE 207 (849)
Q Consensus 128 g~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~ 207 (849)
+.|.+++........+. .... .....++++|++..|+.+.... .+ .|...++++..
T Consensus 475 ~~I~v~d~dg~~~~~l~-----------~~~~-~~P~giavDp~~g~ly~td~~~---------~~--~I~~~~~dG~~- 530 (699)
T 1n7d_A 475 GTVSVADTKGVKRKTLF-----------REQG-SKPRAIVVDPVHGFMYWTDWGT---------PA--KIKKGGLNGVD- 530 (699)
T ss_dssp SCEEEEBSSSCCEEEEC-----------CCSS-CCCCCEECCSSSSCCEECCCSS---------SC--CEEBCCSSSCC-
T ss_pred CeEEEEecCCCceEEEE-----------eCCC-CCcceEEEccCCCcEEEcccCC---------CC--eEEEEeCCCCC-
Confidence 66766665432211111 0011 1256789999766665543221 01 14333333321
Q ss_pred cccceeccccceeeccCCCccccccceEEEccCCCEEEEEe-CCCcEEEEecCCCcccccccccccccccccccccCCCC
Q 003087 208 LEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSD-TNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGR 286 (849)
Q Consensus 208 ~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s-~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~ 286 (849)
...+... ....-..|+|+|+++.|..++ ..++|...++.+... ..+....
T Consensus 531 ~~~l~~~-------------~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~--~~~~~~~-------------- 581 (699)
T 1n7d_A 531 IYSLVTE-------------NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR--KTILEDE-------------- 581 (699)
T ss_dssp CCEESCS-------------SCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCC--EEECCCS--------------
T ss_pred eeEEEeC-------------CCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCce--EEEEecC--------------
Confidence 1111110 011334799999877776665 467888888876422 2221100
Q ss_pred CCCCCCcEEEEEecCCEEEEEEeCCcEEEEEecCCc
Q 003087 287 TKPISDITDFAWWSDNILILARKSSIITMIDVLSGL 322 (849)
Q Consensus 287 ~~~~~~v~~vaws~D~~la~a~~dgti~lwdl~~~~ 322 (849)
.....+..+++-.++.+.+....+.|..++..+++
T Consensus 582 -~~~~~P~glavd~~~lywtd~~~~~V~~~d~~~G~ 616 (699)
T 1n7d_A 582 -KRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGS 616 (699)
T ss_dssp -SSCSSCCCCEEETTEEEEECSTTTCEEEEETTTEE
T ss_pred -CcCCCceEeEEECCEEEEEeCCCCeEEEEEccCCC
Confidence 01122334454444333444566788888876665
No 297
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=94.31 E-value=5.5 Score=46.81 Aligned_cols=227 Identities=8% Similarity=-0.031 Sum_probs=121.1
Q ss_pred eEEEEeCCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEE-EEeCCCcEEEEecCCccceecccccccccccE
Q 003087 24 RVAVAAVNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLG-IVDDTHTVYFFKANGEEITRFTNKHLKVSLPI 102 (849)
Q Consensus 24 ~LAsas~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LA-s~~~dgtIrlWd~~g~~~~~l~~~~~~~~~~V 102 (849)
+|..+..+.|+..+++... ........+-.....|+|.|++..|- +-..++.|+.++++|.....+..... ...
T Consensus 8 ~Ll~s~~~~I~~i~l~~~~--~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~---~~P 82 (628)
T 4a0p_A 8 FLLFSRRADIRRISLETNN--NNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGL---DYP 82 (628)
T ss_dssp EEEEEETTEEEEEESSCTT--CEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSC---SCC
T ss_pred EEEEEeCCcEEEEECCCCC--cceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCC---CCc
Confidence 5555667788888875421 11111112234678999999766655 44567899999998865444322111 123
Q ss_pred EEEEecC-CcccccccceeEEEE-eCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEec
Q 003087 103 IGLIAQD-ETDVQRSCLCSFTVF-TSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSN 180 (849)
Q Consensus 103 ~~l~fs~-~~~~~~s~~~~~~~~-s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~ 180 (849)
.+|++.+ ++. ++.. ...+.|...++.... ...+ +.... ..-..++++|....|..+..
T Consensus 83 ~GlAvD~~~~~--------LY~tD~~~~~I~v~~~dG~~-~~~l----------~~~~l-~~P~~iavdp~~G~lY~tD~ 142 (628)
T 4a0p_A 83 EGMAVDWLGKN--------LYWADTGTNRIEVSKLDGQH-RQVL----------VWKDL-DSPRALALDPAEGFMYWTEW 142 (628)
T ss_dssp CEEEEETTTTE--------EEEEETTTTEEEEEETTSTT-CEEE----------ECSSC-CCEEEEEEETTTTEEEEEEC
T ss_pred ceEEEEeCCCE--------EEEEECCCCEEEEEecCCCc-EEEE----------EeCCC-CCcccEEEccCCCeEEEeCC
Confidence 4666643 222 2222 344566666654221 1111 00121 23689999996555555443
Q ss_pred CCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEEeC-CCcEEEEecC
Q 003087 181 TDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDT-NGCLYIFEMD 259 (849)
Q Consensus 181 d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~-Dgtv~LWd~~ 259 (849)
... + .|...++++.. .+.+.. ....-..|+++|+++.|..++. .+.|...+++
T Consensus 143 g~~---------~--~I~r~~~dG~~-~~~l~~--------------~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~d 196 (628)
T 4a0p_A 143 GGK---------P--KIDRAAMDGSE-RTTLVP--------------NVGRANGLTIDYAKRRLYWTDLDTNLIESSNML 196 (628)
T ss_dssp SSS---------C--EEEEEETTSCS-CEEEEC--------------SCSSEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCC---------C--EEEEEeCCCCc-eEEEEC--------------CCCCcceEEEccccCEEEEEECCCCEEEEEcCC
Confidence 211 1 24333444431 111211 0123457999999888877765 5788888887
Q ss_pred CCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCEEEEEE-eCCcEEEEEecCCc
Q 003087 260 KDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNILILAR-KSSIITMIDVLSGL 322 (849)
Q Consensus 260 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~la~a~-~dgti~lwdl~~~~ 322 (849)
+... ..+. .....+..++.-. +.+..+. .++.|...|..+++
T Consensus 197 G~~~--~v~~------------------~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~ 239 (628)
T 4a0p_A 197 GLNR--EVIA------------------DDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQ 239 (628)
T ss_dssp SCSC--EEEE------------------ECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCC
T ss_pred CCce--EEee------------------ccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCC
Confidence 6532 1211 0123356677644 4555554 46788888876665
No 298
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=94.15 E-value=1 Score=50.90 Aligned_cols=117 Identities=6% Similarity=0.041 Sum_probs=59.3
Q ss_pred CEEEEEECCCCCEEEEEeCCCcEEEEecC-Ccc--ceecccccc--cccccEEEEEecCCcccccccceeEEEEeC----
Q 003087 56 ASIYGAWSESHDVLGIVDDTHTVYFFKAN-GEE--ITRFTNKHL--KVSLPIIGLIAQDETDVQRSCLCSFTVFTS---- 126 (849)
Q Consensus 56 ~v~~vafSPDG~~LAs~~~dgtIrlWd~~-g~~--~~~l~~~~~--~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~---- 126 (849)
.-+.++|.|||+++++-...+.|++++.. |.. +..+..... .-..-..+|+|+|+-... ..|++...
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~----g~lYv~~s~~~~ 103 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNN----PYIYISGTFKNP 103 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTS----CEEEEEEEEECT
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcC----CEEEEEEecccc
Confidence 44689999999988776554578888764 432 122211100 001236689998852111 12333221
Q ss_pred ---------CCcEEEEEecCCCC-cccccccccCCcc-eeccccCCceEEEEEcCCCceEEEEecC
Q 003087 127 ---------DGFLHQIEISQDPS-ASISSASASSSGL-TLRRQFPQNVICTDYHPELSLLSVVSNT 181 (849)
Q Consensus 127 ---------Dg~v~lw~~~~~~~-~~~~~~~~~~~~~-~l~~~~~~~V~svafsPdg~lLas~g~d 181 (849)
...|..++...+.. ....+ .+ + .+.....+....++|.|||++.++.|..
T Consensus 104 ~~~~~~~~~~~~v~r~~~~~~~~~~~~~~-~i----~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd~ 164 (454)
T 1cru_A 104 KSTDKELPNQTIIRRYTYNKSTDTLEKPV-DL----LAGLPSSKDHQSGRLVIGPDQKIYYTIGDQ 164 (454)
T ss_dssp TC--CCSCEEEEEEEEEEETTTTEEEEEE-EE----EEEECCCSSCCEEEEEECTTSCEEEEECCT
T ss_pred CCCccccccccEEEEEEECCCCCCcCCcE-EE----EEcCCCCCCCCCCeEeECCCCeEEEEECCC
Confidence 12344454433211 00000 00 0 0111111247999999999988776643
No 299
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=94.15 E-value=3.8 Score=42.07 Aligned_cols=197 Identities=9% Similarity=-0.003 Sum_probs=101.2
Q ss_pred cceEEEEEcCCCCeEEEEeC---CeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecC-Cc
Q 003087 11 KKQVSLFISPRGERVAVAAV---NQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKAN-GE 86 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas~---~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~-g~ 86 (849)
...-.|.|++ |.+..+.+. +.|+..|..++ +............-..+++. ++++.+..-.++++.++|.. .+
T Consensus 21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tg--kv~~~~~l~~~~fgeGi~~~-~~~ly~ltw~~~~v~v~D~~tl~ 96 (243)
T 3mbr_X 21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETG--RILQRAEVPPPYFGAGIVAW-RDRLIQLTWRNHEGFVYDLATLT 96 (243)
T ss_dssp CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTC--CEEEEEECCTTCCEEEEEEE-TTEEEEEESSSSEEEEEETTTTE
T ss_pred cccccEEEEC-CEEEEECCCCCCceEEEEECCCC--CEEEEEeCCCCcceeEEEEe-CCEEEEEEeeCCEEEEEECCcCc
Confidence 3456789987 666565553 48999997653 44444332212212344443 34445555678999999986 66
Q ss_pred cceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEE
Q 003087 87 EITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICT 166 (849)
Q Consensus 87 ~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~sv 166 (849)
.+.++.-.. .=++++. + + .++++...++.|+++|..+.+....++ ....+..-..++.+
T Consensus 97 ~~~ti~~~~-----~Gwglt~-d-g-------~~L~vSdgs~~l~~iDp~t~~~~~~I~-------V~~~g~~~~~lNeL 155 (243)
T 3mbr_X 97 PRARFRYPG-----EGWALTS-D-D-------SHLYMSDGTAVIRKLDPDTLQQVGSIK-------VTAGGRPLDNLNEL 155 (243)
T ss_dssp EEEEEECSS-----CCCEEEE-C-S-------SCEEEECSSSEEEEECTTTCCEEEEEE-------CEETTEECCCEEEE
T ss_pred EEEEEeCCC-----CceEEee-C-C-------CEEEEECCCCeEEEEeCCCCeEEEEEE-------EccCCcccccceee
Confidence 666654321 1124442 1 1 235555678889999877655433222 01111111246777
Q ss_pred EEcCCCceEEEEecCCCCccccC-CCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEE
Q 003087 167 DYHPELSLLSVVSNTDTSSLTSS-GNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVA 245 (849)
Q Consensus 167 afsPdg~lLas~g~d~t~~~~~~-~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LA 245 (849)
.|. +|++.|..-.++ .+.-| ..+|. .+..+++.+-.. .. .....+ -.+-.+.||++|+++.|.
T Consensus 156 e~~-~G~lyanvw~s~--~I~vIDp~tG~-V~~~idl~~l~~-------~~-~~~~~~----~~~vlNGIA~d~~~~~lf 219 (243)
T 3mbr_X 156 EWV-NGELLANVWLTS--RIARIDPASGK-VVAWIDLQALVP-------DA-DALTDS----TNDVLNGIAFDAEHDRLF 219 (243)
T ss_dssp EEE-TTEEEEEETTTT--EEEEECTTTCB-EEEEEECGGGST-------TT-TSCCCT----TSSCEEEEEEETTTTEEE
T ss_pred EEe-CCEEEEEECCCC--eEEEEECCCCC-EEEEEECCcCcc-------cc-ccccCC----cCCceEEEEEcCCCCEEE
Confidence 777 888665442232 23322 33443 233444332100 00 000000 113456899999988877
Q ss_pred EEe
Q 003087 246 TSD 248 (849)
Q Consensus 246 s~s 248 (849)
..+
T Consensus 220 VTG 222 (243)
T 3mbr_X 220 VTG 222 (243)
T ss_dssp EEE
T ss_pred EEC
Confidence 665
No 300
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=93.99 E-value=0.64 Score=47.24 Aligned_cols=106 Identities=10% Similarity=0.067 Sum_probs=57.1
Q ss_pred CCEEEEEECCCCCEEEEEeCCCcEEEEecCCccceecccc--cc---cccccEEEEEecCCcccccccceeEEEEeCCCc
Q 003087 55 GASIYGAWSESHDVLGIVDDTHTVYFFKANGEEITRFTNK--HL---KVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGF 129 (849)
Q Consensus 55 ~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~~~~~l~~~--~~---~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~ 129 (849)
..+..+||+|||.+-|+ .+|.++-.+.....-..+... ++ +... -..+.|.+++. |+.. .||.
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~--------LYav-~dG~ 108 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGY--------LYAV-SKDK 108 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSC--------EEEE-ETTE
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCC--------EEEe-CCCE
Confidence 46779999999998888 677765555422110111110 00 0001 24566766553 4443 6798
Q ss_pred EEEEEecCCCCcccccccccCCcceec-cccCCceEEEEEcCCCceEEEE
Q 003087 130 LHQIEISQDPSASISSASASSSGLTLR-RQFPQNVICTDYHPELSLLSVV 178 (849)
Q Consensus 130 v~lw~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~V~svafsPdg~lLas~ 178 (849)
|.-++-.+......+. ....+. ++. ..+..|.|.|+|.+-|+.
T Consensus 109 iyr~~pP~~~~~~Wl~-----~a~~vg~~gw-~~~~~lff~p~G~Lyav~ 152 (236)
T 1tl2_A 109 LYKASPPQSDTDNWIA-----RATEVGSGGW-SGFKFLFFHPNGYLYAVH 152 (236)
T ss_dssp EEEESCCCSTTCCHHH-----HSEEEECSSG-GGEEEEEECTTSCEEEEE
T ss_pred EEEeCCCcCCCCceec-----cccEeccCCC-CceEEEEECCCceEEEEe
Confidence 8777643333222211 001111 111 248999999999988776
No 301
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=93.55 E-value=8.9 Score=40.69 Aligned_cols=201 Identities=6% Similarity=-0.142 Sum_probs=104.3
Q ss_pred cceEEEEEcCCCCeEEEEe--CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEE-EEEeCCCcEEEEecCCcc
Q 003087 11 KKQVSLFISPRGERVAVAA--VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVL-GIVDDTHTVYFFKANGEE 87 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas--~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~L-As~~~dgtIrlWd~~g~~ 87 (849)
..+.+|+|++.++.|-.+. .+.|..++..+.... . .....+-.....+|+.+.+..| .+-...+.|.+++.+|..
T Consensus 35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~-~-~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~ 112 (318)
T 3sov_A 35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESV-Q-NVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL 112 (318)
T ss_dssp EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCC-C-EEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCce-E-EEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCc
Confidence 4567899999766665443 467777776542111 1 1111122344678998855544 555567899999999876
Q ss_pred ceecccccccccccEEEEEecC-CcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEE
Q 003087 88 ITRFTNKHLKVSLPIIGLIAQD-ETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICT 166 (849)
Q Consensus 88 ~~~l~~~~~~~~~~V~~l~fs~-~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~sv 166 (849)
...+..... ..-.++++.| ++..-|+ -++..+.|...+... .....+. .... ..-+.+
T Consensus 113 ~~~l~~~~~---~~P~giavdp~~g~ly~t------d~~~~~~I~r~~~dG-~~~~~~~----------~~~l-~~Pngl 171 (318)
T 3sov_A 113 RKVLFWQEL---DQPRAIALDPSSGFMYWT------DWGEVPKIERAGMDG-SSRFIII----------NSEI-YWPNGL 171 (318)
T ss_dssp CEEEECSSC---SSEEEEEEEGGGTEEEEE------ECSSSCEEEEEETTS-CSCEEEE----------CSSC-SCEEEE
T ss_pred EEEEEeCCC---CCccEEEEeCCCCEEEEE------ecCCCCEEEEEEcCC-CCeEEEE----------ECCC-CCccEE
Confidence 544432211 2345777765 2222111 011234555554431 1111110 0111 135899
Q ss_pred EEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEE
Q 003087 167 DYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVAT 246 (849)
Q Consensus 167 afsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs 246 (849)
+|+|++..|..+-... + .|...++++.. .+.+.... ...-..|++. .+.+..+
T Consensus 172 avd~~~~~lY~aD~~~----------~--~I~~~d~dG~~-~~~~~~~~-------------~~~P~glav~-~~~lywt 224 (318)
T 3sov_A 172 TLDYEEQKLYWADAKL----------N--FIHKSNLDGTN-RQAVVKGS-------------LPHPFALTLF-EDILYWT 224 (318)
T ss_dssp EEETTTTEEEEEETTT----------T--EEEEEETTSCS-CEEEECSC-------------CSCEEEEEEE-TTEEEEE
T ss_pred EEeccCCEEEEEECCC----------C--EEEEEcCCCCc-eEEEecCC-------------CCCceEEEEe-CCEEEEE
Confidence 9999888887764432 1 35556655431 11122100 1123456763 3444555
Q ss_pred EeCCCcEEEEecCCC
Q 003087 247 SDTNGCLYIFEMDKD 261 (849)
Q Consensus 247 ~s~Dgtv~LWd~~~~ 261 (849)
-...+.|...+..++
T Consensus 225 d~~~~~V~~~~~~~G 239 (318)
T 3sov_A 225 DWSTHSILACNKYTG 239 (318)
T ss_dssp ETTTTEEEEEETTTC
T ss_pred ecCCCeEEEEECCCC
Confidence 445678888887655
No 302
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=93.51 E-value=0.93 Score=49.20 Aligned_cols=54 Identities=7% Similarity=0.049 Sum_probs=33.5
Q ss_pred CEEEEEECCCCC-EEEEEeCCCcEEEEecCCccceecccc-cc--cccccEEEEEecCC
Q 003087 56 ASIYGAWSESHD-VLGIVDDTHTVYFFKANGEEITRFTNK-HL--KVSLPIIGLIAQDE 110 (849)
Q Consensus 56 ~v~~vafSPDG~-~LAs~~~dgtIrlWd~~g~~~~~l~~~-~~--~~~~~V~~l~fs~~ 110 (849)
.-+.|+|.|||+ ++ +++..|.|++++..|+....+... .. ....-..+|+|+|+
T Consensus 19 ~P~~i~~~pdG~~l~-V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pd 76 (353)
T 2g8s_A 19 HPWALAFLPDNHGML-ITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPD 76 (353)
T ss_dssp SEEEEEECSTTCCEE-EEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTT
T ss_pred CcEEEEEcCCCCEEE-EEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCC
Confidence 347899999999 55 556679999998776532111110 00 00123578999885
No 303
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=93.39 E-value=1.2 Score=50.26 Aligned_cols=64 Identities=8% Similarity=-0.022 Sum_probs=39.3
Q ss_pred ccceEEEEEcCCCCeEEEEeC-CeEEEEecCCCCCcceeeeee-----cCCCCEEEEEECCC----CCEEEEEe
Q 003087 10 TKKQVSLFISPRGERVAVAAV-NQVTILQKDDDYQEPCGIFNC-----TGLGASIYGAWSES----HDVLGIVD 73 (849)
Q Consensus 10 ~~~v~slafSPdG~~LAsas~-~~i~iw~~~~~~~~~~~~~~~-----~~~~~v~~vafSPD----G~~LAs~~ 73 (849)
....++++|.|||+++++-.. +.|.+++..++.......+.. .+......|||+|| |.+.++-+
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s 99 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGT 99 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEE
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEe
Confidence 467889999999998887655 467777643322111111110 12456779999994 55555543
No 304
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=93.31 E-value=1.1 Score=52.31 Aligned_cols=30 Identities=27% Similarity=0.411 Sum_probs=24.4
Q ss_pred cCCCEEEEEeCCCcEEEEecCCCcccccccc
Q 003087 239 PQGKFVATSDTNGCLYIFEMDKDNFSLSKFA 269 (849)
Q Consensus 239 PDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~ 269 (849)
..|.+++.++.||.|+.||..+++. ++++.
T Consensus 495 tagglvf~g~~dg~l~A~D~~tG~~-lW~~~ 524 (582)
T 1flg_A 495 TAGNLVFTGTGDGYFKAFDAKSGKE-LWKFQ 524 (582)
T ss_dssp ETTTEEEEECTTSEEEEEETTTCCE-EEEEE
T ss_pred eCCCEEEEECCCCcEEEEECCCCCE-EEEec
Confidence 3677888899999999999999875 55554
No 305
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=93.22 E-value=2.3 Score=49.70 Aligned_cols=42 Identities=10% Similarity=0.135 Sum_probs=29.5
Q ss_pred cCCEEEEEEeCCcEEEEEecCCccccc--------cCC---CCCCeEEEEEec
Q 003087 300 SDNILILARKSSIITMIDVLSGLKVKE--------TDP---KLRGHVFLLESK 341 (849)
Q Consensus 300 ~D~~la~a~~dgti~lwdl~~~~~l~~--------~~~---~~~g~~~~Le~~ 341 (849)
.++.+.+++.||.++.+|..+|+.+-. ..| .++|+.|+.-..
T Consensus 483 agg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~qyv~~~~ 535 (599)
T 1w6s_A 483 AGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAIYY 535 (599)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred cCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEEEEEEEc
Confidence 466677788999999999999986531 123 257887775443
No 306
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=93.06 E-value=1.3 Score=52.33 Aligned_cols=69 Identities=9% Similarity=0.054 Sum_probs=47.6
Q ss_pred ceEEEEEcCCCCeEEEEe--CCeEEEEecCCCCCcceeeeee--cC-CCCE-EEEEECCCCCEEEEEe-CC-----CcEE
Q 003087 12 KQVSLFISPRGERVAVAA--VNQVTILQKDDDYQEPCGIFNC--TG-LGAS-IYGAWSESHDVLGIVD-DT-----HTVY 79 (849)
Q Consensus 12 ~v~slafSPdG~~LAsas--~~~i~iw~~~~~~~~~~~~~~~--~~-~~~v-~~vafSPDG~~LAs~~-~d-----gtIr 79 (849)
...++++.+||++++.|+ ++.+.+||...+ .+.. .. .+.. .+++..|||++++.|+ .+ .++.
T Consensus 244 ~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~------~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e 317 (656)
T 1k3i_A 244 FCPGISMDGNGQIVVTGGNDAKKTSLYDSSSD------SWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGE 317 (656)
T ss_dssp SSCEEEECTTSCEEEECSSSTTCEEEEEGGGT------EEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEE
T ss_pred ccccccCCCCCCEEEeCCCCCCceEEecCcCC------ceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccce
Confidence 344688999999999997 357889986532 2221 00 1222 4677889999999998 44 5799
Q ss_pred EEecCCc
Q 003087 80 FFKANGE 86 (849)
Q Consensus 80 lWd~~g~ 86 (849)
+||....
T Consensus 318 ~yd~~t~ 324 (656)
T 1k3i_A 318 VYSPSSK 324 (656)
T ss_dssp EEETTTT
T ss_pred EeCCCCC
Confidence 9998644
No 307
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=92.90 E-value=1.3 Score=50.64 Aligned_cols=173 Identities=12% Similarity=0.062 Sum_probs=85.9
Q ss_pred EEEEEECCC--CCEEEEEeCCCcEEEEecCCccceecccccccccccEEEEEe-------cCCcccccccceeEEEEeCC
Q 003087 57 SIYGAWSES--HDVLGIVDDTHTVYFFKANGEEITRFTNKHLKVSLPIIGLIA-------QDETDVQRSCLCSFTVFTSD 127 (849)
Q Consensus 57 v~~vafSPD--G~~LAs~~~dgtIrlWd~~g~~~~~l~~~~~~~~~~V~~l~f-------s~~~~~~~s~~~~~~~~s~D 127 (849)
-..|+|+|. +++.++-...+.|+++|..++.+.++............+|+| .+++. .+++....
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~-------~lyvad~~ 213 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAE-------YMIVAIDY 213 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTC-------EEEEEECC
T ss_pred CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCC-------EEEEEeCC
Confidence 358999993 555555555578999999877666654321111124678898 65442 24444443
Q ss_pred C-----cEEEEEe--cC-CCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeE
Q 003087 128 G-----FLHQIEI--SQ-DPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISL 199 (849)
Q Consensus 128 g-----~v~lw~~--~~-~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~l 199 (849)
+ ...++-+ .. +....... ...+. .+. ....++++|++..|.++.... | .|..
T Consensus 214 ~~~~~~~~~V~~i~r~~~G~~~~~~~------~~~v~-~~~-~p~giavdp~~g~LYvtd~~~----------g--~V~r 273 (496)
T 3kya_A 214 DGKGDESPSVYIIKRNADGTFDDRSD------IQLIA-AYK-QCNGATIHPINGELYFNSYEK----------G--QVFR 273 (496)
T ss_dssp CTTGGGEEEEEEEECCTTSCCSTTSC------EEEEE-EES-CCCCEEECTTTCCEEEEETTT----------T--EEEE
T ss_pred CCCcccCceEEEEecCCCCceeeccc------ceeec-cCC-CceEEEEcCCCCeEEEEECCC----------C--EEEE
Confidence 3 2223333 22 11110000 00111 112 246789999655555544332 2 2666
Q ss_pred EEec-------CCcCcccceecc---ccceeeccCCCccccccceEEEccCCCEEEEEe-CCCcEEEEecCC
Q 003087 200 WRRC-------HNLELEQLYTTQ---IEGLYCEPKGHEVQLAHPKVLISPQGKFVATSD-TNGCLYIFEMDK 260 (849)
Q Consensus 200 W~~~-------~~~~~~~l~~~~---~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s-~Dgtv~LWd~~~ 260 (849)
+++. ++....+..... ...++.... ..+-+.|+|+|+|++|..++ ....|+.++.++
T Consensus 274 ~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~----~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg 341 (496)
T 3kya_A 274 LDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIAD----PSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDE 341 (496)
T ss_dssp ECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSS----SSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred EecccccccccCceeecccccccccccceeEecCC----CCCceEEEEcCCCCEEEEEeCCCCEEEEEecCC
Confidence 6665 221100000000 001111111 12456899999999655555 567787766654
No 308
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=92.77 E-value=0.53 Score=56.25 Aligned_cols=205 Identities=9% Similarity=-0.077 Sum_probs=100.7
Q ss_pred cceEEEEEcCCCCeEEEEe--CCeEEEEecCCCC-CcceeeeeecCCCCEEEEEECCCC-CEEEEEeCCCcEEEEecCCc
Q 003087 11 KKQVSLFISPRGERVAVAA--VNQVTILQKDDDY-QEPCGIFNCTGLGASIYGAWSESH-DVLGIVDDTHTVYFFKANGE 86 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas--~~~i~iw~~~~~~-~~~~~~~~~~~~~~v~~vafSPDG-~~LAs~~~dgtIrlWd~~g~ 86 (849)
+.+..|+|+|+++.|-.+. .+.|..++..+.. +.........+......||+.+.+ ++.++-...++|.+++..|.
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 4567899999888776663 4678777765310 000001111111223568998655 44455456789999999987
Q ss_pred cceecccccccccccEEEEEecC-CcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEE
Q 003087 87 EITRFTNKHLKVSLPIIGLIAQD-ETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVIC 165 (849)
Q Consensus 87 ~~~~l~~~~~~~~~~V~~l~fs~-~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~s 165 (849)
....+..... ..-.+|++.| ++.+-|+. ++..+.|...++.. .....+. .... ..-+.
T Consensus 486 ~~~~l~~~~~---~~P~giavDp~~g~ly~td------~~~~~~I~~~~~dG-~~~~~l~----------~~~l-~~PnG 544 (699)
T 1n7d_A 486 KRKTLFREQG---SKPRAIVVDPVHGFMYWTD------WGTPAKIKKGGLNG-VDIYSLV----------TENI-QWPNG 544 (699)
T ss_dssp CEEEECCCSS---CCCCCEECCSSSSCCEECC------CSSSCCEEBCCSSS-CCCCEES----------CSSC-SSCCC
T ss_pred ceEEEEeCCC---CCcceEEEccCCCcEEEcc------cCCCCeEEEEeCCC-CCeeEEE----------eCCC-CCccE
Confidence 6554433211 1234567665 33222211 01124555544332 1111100 0011 13578
Q ss_pred EEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEE
Q 003087 166 TDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVA 245 (849)
Q Consensus 166 vafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LA 245 (849)
|+|+|++..|.++-... + .|...++++.. ...+.... + .......|++..+ .++.
T Consensus 545 lavd~~~~~LY~aD~~~----------~--~I~~~d~dG~~-~~~~~~~~--~---------~~~~P~glavd~~-~lyw 599 (699)
T 1n7d_A 545 ITLDLLSGRLYWVDSKL----------H--SISSIDVNGGN-RKTILEDE--K---------RLAHPFSLAVFED-KVFW 599 (699)
T ss_dssp EEECTTTCCEEEEETTT----------T--EEEEECSSSSC-CEEECCCS--S---------SCSSCCCCEEETT-EEEE
T ss_pred EEEeccCCEEEEEecCC----------C--eEEEEccCCCc-eEEEEecC--C---------cCCCceEeEEECC-EEEE
Confidence 99999987777664332 1 35555554421 11111100 0 0112235666333 3444
Q ss_pred EEeCCCcEEEEecCCC
Q 003087 246 TSDTNGCLYIFEMDKD 261 (849)
Q Consensus 246 s~s~Dgtv~LWd~~~~ 261 (849)
+....+.|..++..++
T Consensus 600 td~~~~~V~~~d~~~G 615 (699)
T 1n7d_A 600 TDIINEAIFSANRLTG 615 (699)
T ss_dssp ECSTTTCEEEEETTTE
T ss_pred EeCCCCeEEEEEccCC
Confidence 4445678888887655
No 309
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=92.05 E-value=8.2 Score=48.75 Aligned_cols=138 Identities=11% Similarity=0.095 Sum_probs=81.0
Q ss_pred CCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCC
Q 003087 126 SDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHN 205 (849)
Q Consensus 126 ~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~ 205 (849)
..|.|.++++..++.....+ . ..+..|.+++=- +|++||..| . .|++|+....
T Consensus 862 ~~Gri~vf~v~~~kL~lv~~-------~----~v~g~v~al~~~-~g~Lla~ig-~--------------~l~vy~l~~~ 914 (1158)
T 3ei3_A 862 KQGRIVVFQYSDGKLQTVAE-------K----EVKGAVYSMVEF-NGKLLASIN-S--------------TVRLYEWTTE 914 (1158)
T ss_dssp CCEEEEEEEEETTEEEEEEE-------E----EESSCEEEEEEE-TTEEEEEET-T--------------EEEEEEECTT
T ss_pred CceEEEEEEEECCEEEEEEE-------E----EcCCcCEEEeee-CCEEEEEcC-C--------------EEEEEECCCC
Confidence 35889999987333211111 1 123457777633 477776543 2 2888888653
Q ss_pred cCcccceeccccceeeccCCCccccccceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCC
Q 003087 206 LELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDG 285 (849)
Q Consensus 206 ~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~ 285 (849)
..+. ... . +...|..+.+.-.|++++.|+.-..|.+.......-.+..+.. .
T Consensus 915 ~~L~--~~~---~---------~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~----------D---- 966 (1158)
T 3ei3_A 915 KELR--TEC---N---------HYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIAR----------D---- 966 (1158)
T ss_dssp SCEE--EEE---E---------ECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEE----------C----
T ss_pred ceEE--EEe---e---------ccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEe----------e----
Confidence 2111 010 0 1122444455557899999999998888654322111222211 0
Q ss_pred CCCCCCCcEEEEEecCCEEEEEEeCCcEEEEEecC
Q 003087 286 RTKPISDITDFAWWSDNILILARKSSIITMIDVLS 320 (849)
Q Consensus 286 ~~~~~~~v~~vaws~D~~la~a~~dgti~lwdl~~ 320 (849)
-...++.++.+-.++.++.+..+|+|.+...+.
T Consensus 967 --~~~~~vta~~~ld~~t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 967 --FNPNWMSAVEILDDDNFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp --CSCBCEEEEEEEETTEEEEEETTSEEEEEEECT
T ss_pred --cccccEEEEEEEccCcEEEEcCCCcEEEEecCC
Confidence 123568889988888888999999999988765
No 310
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=92.01 E-value=13 Score=44.97 Aligned_cols=149 Identities=9% Similarity=-0.076 Sum_probs=80.1
Q ss_pred cceEEEEEcCCCCeEEEEe--CCeEEEEecCCCCC-cceeeeeecCCCCEEEEEECCCCCEEE-EEeCCCcEEEEecCCc
Q 003087 11 KKQVSLFISPRGERVAVAA--VNQVTILQKDDDYQ-EPCGIFNCTGLGASIYGAWSESHDVLG-IVDDTHTVYFFKANGE 86 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas--~~~i~iw~~~~~~~-~~~~~~~~~~~~~v~~vafSPDG~~LA-s~~~dgtIrlWd~~g~ 86 (849)
+.+.+|+|++.+..|-.+. .+.|..++..+... .........+......||+.+.|+.|- +-...++|.+.+++|.
T Consensus 424 ~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~ 503 (791)
T 3m0c_C 424 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 503 (791)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred CceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCC
Confidence 5678999999766665543 46777777543100 001111111223446799998886555 4456789999999987
Q ss_pred cceecccccccccccEEEEEecCC-cccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEE
Q 003087 87 EITRFTNKHLKVSLPIIGLIAQDE-TDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVIC 165 (849)
Q Consensus 87 ~~~~l~~~~~~~~~~V~~l~fs~~-~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~s 165 (849)
....+..... ....+|++.|. +..-|+ -++..+.|...++.. .....+ +.+.. ...+.
T Consensus 504 ~~~~l~~~~l---~~P~gIaVDp~~g~LYwt------D~g~~~~I~~~~~dG-~~~~~l----------v~~~l-~~P~G 562 (791)
T 3m0c_C 504 KRKTLFRENG---SKPRAIVVDPVHGFMYWT------DWGTPAKIKKGGLNG-VDIYSL----------VTENI-QWPNG 562 (791)
T ss_dssp SEEEEEECTT---CCEEEEEEETTTTEEEEE------ECSSSCEEEEEETTS-CCEEEE----------ECSSC-SCEEE
T ss_pred eEEEEEeCCC---CCcceEEEecCCCCEEEe------cCCCCCeEEEEecCC-CceEEE----------EeCCC-CCceE
Confidence 7555533221 23567888663 322221 112224455554432 111111 01111 24789
Q ss_pred EEEcCCCceEEEEec
Q 003087 166 TDYHPELSLLSVVSN 180 (849)
Q Consensus 166 vafsPdg~lLas~g~ 180 (849)
|+++|.+..|..+-.
T Consensus 563 LavD~~~~~LYwaD~ 577 (791)
T 3m0c_C 563 ITLDLLSGRLYWVDS 577 (791)
T ss_dssp EEEETTTTEEEEEET
T ss_pred EEEecCCCeEEEEeC
Confidence 999988888877643
No 311
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=89.96 E-value=9.7 Score=44.40 Aligned_cols=31 Identities=26% Similarity=0.383 Sum_probs=25.0
Q ss_pred ccCCCEEEEEeCCCcEEEEecCCCcccccccc
Q 003087 238 SPQGKFVATSDTNGCLYIFEMDKDNFSLSKFA 269 (849)
Q Consensus 238 SPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~ 269 (849)
+-.|.+|..++.||.|+.+|..+++. ++++.
T Consensus 481 ~tagg~vf~gt~dg~l~A~D~~tG~~-lW~~~ 511 (599)
T 1w6s_A 481 ATAGDLVFYGTLDGYLKARDSDTGDL-LWKFK 511 (599)
T ss_dssp EETTTEEEEECTTSEEEEEETTTCCE-EEEEE
T ss_pred EecCCEEEEECCCCeEEEEECCCCCE-EEEee
Confidence 34778888899999999999999875 55554
No 312
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=89.85 E-value=4.2 Score=43.11 Aligned_cols=81 Identities=12% Similarity=0.197 Sum_probs=49.9
Q ss_pred CcccccceEEEEEcCCCCeEEEEeC-C--------------eEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEE
Q 003087 6 QPRKTKKQVSLFISPRGERVAVAAV-N--------------QVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLG 70 (849)
Q Consensus 6 ~~~~~~~v~slafSPdG~~LAsas~-~--------------~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LA 70 (849)
+|+|+..-.+-.|+|+|++|.-+.. + .|...+.++. . ...+. . . ...+|||+|+.|+
T Consensus 48 ~~~~l~~~~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~--~-~~~l~-~--~--~~~~~s~~g~~Iy 119 (302)
T 3s25_A 48 NIHKLSNDTAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGH--G-STVLD-P--D--PCIYASLIGNYIY 119 (302)
T ss_dssp SCEEEEEEEEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSC--C-CEEEE-C--S--CEEEEEEETTEEE
T ss_pred CCEEccCCceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCC--c-ceEee-c--C--CccEEEEeCCEEE
Confidence 3666655556678999999988753 1 3444454432 1 11111 1 1 2348999999999
Q ss_pred EEe----CCCcEEEEecCCccceecccc
Q 003087 71 IVD----DTHTVYFFKANGEEITRFTNK 94 (849)
Q Consensus 71 s~~----~dgtIrlWd~~g~~~~~l~~~ 94 (849)
-.+ .+..|+.-+++|....++..+
T Consensus 120 ~~~~~~~~~~~Iy~~~~dGs~~~~lt~~ 147 (302)
T 3s25_A 120 YLHYDTQTATSLYRIRIDGEEKKKIKNH 147 (302)
T ss_dssp EEEESSSSCEEEEEEETTSCCCEEEESS
T ss_pred EEeecCCCCceEEEEECCCCCeEEEeCC
Confidence 876 345676777788776666543
No 313
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=89.68 E-value=23 Score=41.31 Aligned_cols=148 Identities=7% Similarity=-0.093 Sum_probs=80.1
Q ss_pred ccceEEEEEcCCCCeEEEEe--CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEE-eCCCcEEEEecCCc
Q 003087 10 TKKQVSLFISPRGERVAVAA--VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIV-DDTHTVYFFKANGE 86 (849)
Q Consensus 10 ~~~v~slafSPdG~~LAsas--~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~-~~dgtIrlWd~~g~ 86 (849)
.+.+..|+|+|++..|-.+. .+.|..++..+.. ...... ..+......||+.+.++.|..+ ...+.|.+.+.+|.
T Consensus 39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~-~~~~v~-~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~ 116 (619)
T 3s94_A 39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTE-SVQNVV-VSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGS 116 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CEEEE-CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCC-ceEEEE-eCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCC
Confidence 46688999999888776663 4678777754321 111111 1223456789999976666555 45789999999987
Q ss_pred cceecccccccccccEEEEEecC-CcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEE
Q 003087 87 EITRFTNKHLKVSLPIIGLIAQD-ETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVIC 165 (849)
Q Consensus 87 ~~~~l~~~~~~~~~~V~~l~fs~-~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~s 165 (849)
....+...... .-.+|++.| ++..-|+ -++..+.|...+... .....+. .... ..-+.
T Consensus 117 ~~~~l~~~~l~---~P~~Iavdp~~g~ly~t------D~g~~~~I~r~~~dG-~~~~~l~----------~~~~-~~P~G 175 (619)
T 3s94_A 117 LRKVLFWQELD---QPRAIALDPSSGFMYWT------DWGEVPKIERAGMDG-SSRFIII----------NSEI-YWPNG 175 (619)
T ss_dssp SCEEEECSSCS---CCCCEEEETTTTEEEEE------ECSSSCEEEEEETTS-CSCEEEE----------CSSC-SSEEE
T ss_pred CEEEEEeCCCC---CCceEEEecCCCeEEEe------ccCCCCEEEEEECCC-CceEEEE----------eCCC-CCCcE
Confidence 65555322221 233566655 2322111 112234444333321 1111110 0011 24689
Q ss_pred EEEcCCCceEEEEec
Q 003087 166 TDYHPELSLLSVVSN 180 (849)
Q Consensus 166 vafsPdg~lLas~g~ 180 (849)
++++|+++.|..+-.
T Consensus 176 lald~~~~~LY~aD~ 190 (619)
T 3s94_A 176 LTLDYEEQKLYWADA 190 (619)
T ss_dssp EEEETTTTEEEEEET
T ss_pred EEEEccCCEEEEEeC
Confidence 999998877777643
No 314
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=88.64 E-value=30 Score=37.42 Aligned_cols=160 Identities=4% Similarity=0.003 Sum_probs=82.5
Q ss_pred CCCEEEEEeCCCcEEEEecCCccceecccccccccccEEEEEecCCccccccc-ceeEEEEeC--CCcEEEEEecC--CC
Q 003087 65 SHDVLGIVDDTHTVYFFKANGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSC-LCSFTVFTS--DGFLHQIEISQ--DP 139 (849)
Q Consensus 65 DG~~LAs~~~dgtIrlWd~~g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~-~~~~~~~s~--Dg~v~lw~~~~--~~ 139 (849)
...++......+.+.|+|++|+++..+... .+++|..-|+-...+.. +--+++-.. +++|+++++.. ++
T Consensus 39 ~~s~ii~t~k~~gL~Vydl~G~~l~~~~~g------~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~ 112 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSLDGKMLHSYNTG------KLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT 112 (355)
T ss_dssp GGCEEEEEETTTEEEEEETTSCEEEEECCS------CEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC
T ss_pred CccEEEEEcCCCCEEEEcCCCcEEEEccCC------CcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc
Confidence 344555555667899999999998887542 34555554422111110 001233334 67899998843 22
Q ss_pred CcccccccccCCcceeccccCCceEEEEE--cCC-Cce-EEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceecc
Q 003087 140 SASISSASASSSGLTLRRQFPQNVICTDY--HPE-LSL-LSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQ 215 (849)
Q Consensus 140 ~~~~~~~~~~~~~~~l~~~~~~~V~svaf--sPd-g~l-Las~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~ 215 (849)
. .... .....+.... ..+..+++ +|. |++ +.+.+.++ .+..|++....+.. + +.+
T Consensus 113 l-~~i~----~~~~pv~t~~-~~pyGlcly~~~~~g~~yafV~~k~G-------------~~~q~~l~~~~~g~-~-~~~ 171 (355)
T 3amr_A 113 L-QSMT----DPDHPIATAI-NEVYGFTLYHSQKTGKYYAMVTGKEG-------------EFEQYELKADKNGY-I-SGK 171 (355)
T ss_dssp E-EECS----CTTSCEECCC-SSCCCEEEEECTTTCCEEEEEECSSS-------------EEEEEEEEECTTSC-E-EEE
T ss_pred e-eecc----ccccCcCCCC-CCeeEEEEEecCCCCcEEEEEECCCC-------------eEEEEEEEeCCCCc-c-cce
Confidence 1 1110 0000000010 34677777 785 553 43433333 37778875421110 0 111
Q ss_pred ccceeeccCCCccccccceEEEccCCCEEEEEeCCCcEEEEecC
Q 003087 216 IEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMD 259 (849)
Q Consensus 216 ~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~ 259 (849)
....|.. ...+-.++..|....|..+-.+.- ||.++
T Consensus 172 lVR~f~l------gsq~EgcvvDd~~g~Lyv~eEd~G--Iw~~d 207 (355)
T 3amr_A 172 KVRAFKM------NSQTEGMAADDEYGRLYIAEEDEA--IWKFS 207 (355)
T ss_dssp EEEEEEC------SSCEEEEEEETTTTEEEEEETTTE--EEEEE
T ss_pred EEEEecC------CCCcceEEEcCCCCeEEEecccce--EEEEe
Confidence 1111111 125668899999999999988854 67665
No 315
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=87.88 E-value=33 Score=37.05 Aligned_cols=195 Identities=12% Similarity=0.166 Sum_probs=100.7
Q ss_pred eEEEEeCCeEEEEecCCCCCcceeeeeecCCCCEEEEEECC----CCCE--EEE--EeC--CCcEEEEecC--Cccceec
Q 003087 24 RVAVAAVNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSE----SHDV--LGI--VDD--THTVYFFKAN--GEEITRF 91 (849)
Q Consensus 24 ~LAsas~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSP----DG~~--LAs--~~~--dgtIrlWd~~--g~~~~~l 91 (849)
+|++.-.+.+.++++. ++.+..+. .+.++.|..-| .|+. ||. ... +++|+|++++ .+.+..+
T Consensus 43 ii~t~k~~gL~Vydl~---G~~l~~~~---~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i 116 (355)
T 3amr_A 43 LITTNKKSGLVVYSLD---GKMLHSYN---TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSM 116 (355)
T ss_dssp EEEEETTTEEEEEETT---SCEEEEEC---CSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEEC
T ss_pred EEEEcCCCCEEEEcCC---CcEEEEcc---CCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeec
Confidence 3333335678888874 33443332 23455555555 3333 333 333 6899999764 3344444
Q ss_pred ccc--ccccc-ccEEEEEe--cCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEE
Q 003087 92 TNK--HLKVS-LPIIGLIA--QDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICT 166 (849)
Q Consensus 92 ~~~--~~~~~-~~V~~l~f--s~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~sv 166 (849)
... ...-. ..+.++++ ++.... .++++...+|.+..|++.......... ....+|.- ...+-.+
T Consensus 117 ~~~~~pv~t~~~~pyGlcly~~~~~g~-----~yafV~~k~G~~~q~~l~~~~~g~~~~----~lVR~f~l--gsq~Egc 185 (355)
T 3amr_A 117 TDPDHPIATAINEVYGFTLYHSQKTGK-----YYAMVTGKEGEFEQYELKADKNGYISG----KKVRAFKM--NSQTEGM 185 (355)
T ss_dssp SCTTSCEECCCSSCCCEEEEECTTTCC-----EEEEEECSSSEEEEEEEEECTTSCEEE----EEEEEEEC--SSCEEEE
T ss_pred cccccCcCCCCCCeeEEEEEecCCCCc-----EEEEEECCCCeEEEEEEEeCCCCcccc----eEEEEecC--CCCcceE
Confidence 221 00000 23445555 442110 136667889999999985422110100 00012221 2347888
Q ss_pred EEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCc----ccceeccccceeeccCCCccccccceEEE--ccC
Q 003087 167 DYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLEL----EQLYTTQIEGLYCEPKGHEVQLAHPKVLI--SPQ 240 (849)
Q Consensus 167 afsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~----~~l~~~~~~~~~~~~~g~~h~~~V~~vaf--SPD 240 (849)
++.|....|.++-.+ +.+|++...... ..+.... .+. -...+-.|++ .++
T Consensus 186 vvDd~~g~Lyv~eEd---------------~GIw~~da~p~~~~~~~~v~~~~--------~g~-l~aDvEGLai~~~~~ 241 (355)
T 3amr_A 186 AADDEYGRLYIAEED---------------EAIWKFSAEPDGGSNGTVIDRAD--------GRH-LTRDIEGLTIYYAAD 241 (355)
T ss_dssp EEETTTTEEEEEETT---------------TEEEEEECSTTSCSCCEEEEEBS--------SSS-BCSCEEEEEEEECGG
T ss_pred EEcCCCCeEEEeccc---------------ceEEEEeCCcCCCCCceEEEEec--------CCc-cccCcceEEEEecCC
Confidence 889887788776555 246877633211 1111100 110 1124667888 677
Q ss_pred CC-EEEEEe-CCCcEEEEecC
Q 003087 241 GK-FVATSD-TNGCLYIFEMD 259 (849)
Q Consensus 241 G~-~LAs~s-~Dgtv~LWd~~ 259 (849)
|+ +|.+++ .+.++.+||..
T Consensus 242 g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 242 GKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp GCEEEEEEEGGGTEEEEEESS
T ss_pred CCEEEEEEcCCCCEEEEEECC
Confidence 77 555555 67899999997
No 316
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=87.15 E-value=51 Score=38.39 Aligned_cols=189 Identities=7% Similarity=-0.025 Sum_probs=96.4
Q ss_pred eEEEEeCCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEE-EEeCCCcEEEEecCCccceecccccccccccE
Q 003087 24 RVAVAAVNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLG-IVDDTHTVYFFKANGEEITRFTNKHLKVSLPI 102 (849)
Q Consensus 24 ~LAsas~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LA-s~~~dgtIrlWd~~g~~~~~l~~~~~~~~~~V 102 (849)
+|..+..+.|+..+......... .....+-.....|+|.|.+..|- +-...+.|+-++.+|.....+..... ...
T Consensus 319 ~Ll~~~~~~i~~i~l~~~~~~~~-~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~---~~p 394 (619)
T 3s94_A 319 LLLLARRTDLRRISLDTPDFTDI-VLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQI---AHP 394 (619)
T ss_dssp EEEEEESSCEEEEESSSTTCCCE-ECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSC---SCC
T ss_pred EEEEEcccceEEEecCCCcccee-EEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCC---CCc
Confidence 45555556666666543211111 11112234578899998555444 44567899999998754333322111 124
Q ss_pred EEEEecC-CcccccccceeEEEE-eCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEec
Q 003087 103 IGLIAQD-ETDVQRSCLCSFTVF-TSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSN 180 (849)
Q Consensus 103 ~~l~fs~-~~~~~~s~~~~~~~~-s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~ 180 (849)
.+|++.. ++. ++.. +..+.|.+.++.... ...+ +.+.. ..-++++++|....|..+..
T Consensus 395 ~GlAvD~~~~~--------lY~tD~~~~~I~v~~~~G~~-~~~l----------~~~~l-~~P~~iavdp~~G~ly~tD~ 454 (619)
T 3s94_A 395 DGIAVDWVARN--------LYWTDTGTDRIEVTRLNGTM-RKIL----------ISEDL-EEPRAIVLDPMVGYMYWTDW 454 (619)
T ss_dssp CEEEEETTTTE--------EEEEETTTTEEEEEETTSCS-CEEE----------ECTTC-CSEEEEEEETTTTEEEEEEC
T ss_pred CceEEecccCc--------EEEEeCCCCcEEEEeCCCCe-EEEE----------EECCC-CCeeeEEEEcCCCcEEEecC
Confidence 4677643 222 2222 345667666654221 1111 01111 24789999997444444432
Q ss_pred CCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEEeC-CCcEEEEecC
Q 003087 181 TDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDT-NGCLYIFEMD 259 (849)
Q Consensus 181 d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~-Dgtv~LWd~~ 259 (849)
... + .|.-.++++.. ...+... .-..-..|+++|+++.|..++. .+.|...+++
T Consensus 455 g~~---------~--~I~r~~~dG~~-~~~l~~~-------------~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~d 509 (619)
T 3s94_A 455 GEI---------P--KIERAALDGSD-RVVLVNT-------------SLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTD 509 (619)
T ss_dssp SSS---------C--EEEEEETTSCS-CEEEECS-------------SCSCEEEEEEETTTTEEEEEETTTTEEEEEESS
T ss_pred CCC---------C--EEEEEccCCCc-cEEEEeC-------------CCCCCeeeEEcccCCEEEEEECCCCEEEEEecC
Confidence 210 1 13333334321 1112111 1124457999998888877765 4678888887
Q ss_pred CC
Q 003087 260 KD 261 (849)
Q Consensus 260 ~~ 261 (849)
+.
T Consensus 510 G~ 511 (619)
T 3s94_A 510 GT 511 (619)
T ss_dssp SC
T ss_pred CC
Confidence 65
No 317
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=86.30 E-value=56 Score=38.07 Aligned_cols=198 Identities=9% Similarity=-0.070 Sum_probs=106.0
Q ss_pred ccceEEEEEcCCCCeEEEEe--CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEE-EEeCCCcEEEEecCCc
Q 003087 10 TKKQVSLFISPRGERVAVAA--VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLG-IVDDTHTVYFFKANGE 86 (849)
Q Consensus 10 ~~~v~slafSPdG~~LAsas--~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LA-s~~~dgtIrlWd~~g~ 86 (849)
.+.+..|+|+|++..|-.+. .+.|..++.++.. .......+......||+.+.++.|- +-...+.|.+.+++|.
T Consensus 36 ~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~---~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~ 112 (628)
T 4a0p_A 36 VKEASALDFDVTDNRIYWTDISLKTISRAFMNGSA---LEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQ 112 (628)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS---CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTST
T ss_pred CCceEEEEEECCCCEEEEEECCCCeEEEEECCCCC---cEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCC
Confidence 45688999999887776553 5678777765321 1112111223346788887766554 4455788999999987
Q ss_pred cceecccccccccccEEEEEecC-CcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEE
Q 003087 87 EITRFTNKHLKVSLPIIGLIAQD-ETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVIC 165 (849)
Q Consensus 87 ~~~~l~~~~~~~~~~V~~l~fs~-~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~s 165 (849)
....+..... ..-.+|++.| .+..-|+ -++..+.|...++..... .. +.... ..-+.
T Consensus 113 ~~~~l~~~~l---~~P~~iavdp~~G~lY~t------D~g~~~~I~r~~~dG~~~-~~-----------l~~~~-~~P~G 170 (628)
T 4a0p_A 113 HRQVLVWKDL---DSPRALALDPAEGFMYWT------EWGGKPKIDRAAMDGSER-TT-----------LVPNV-GRANG 170 (628)
T ss_dssp TCEEEECSSC---CCEEEEEEETTTTEEEEE------ECSSSCEEEEEETTSCSC-EE-----------EECSC-SSEEE
T ss_pred cEEEEEeCCC---CCcccEEEccCCCeEEEe------CCCCCCEEEEEeCCCCce-EE-----------EECCC-CCcce
Confidence 6544432221 2246788866 3322221 112234454444432111 11 11111 24689
Q ss_pred EEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEE
Q 003087 166 TDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVA 245 (849)
Q Consensus 166 vafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LA 245 (849)
++++++++.|..+-... + .|...++++.. . .+.... ...-..|++. +..|.
T Consensus 171 lalD~~~~~LY~aD~~~----------~--~I~~~d~dG~~-~-~v~~~~-------------l~~P~glav~--~~~ly 221 (628)
T 4a0p_A 171 LTIDYAKRRLYWTDLDT----------N--LIESSNMLGLN-R-EVIADD-------------LPHPFGLTQY--QDYIY 221 (628)
T ss_dssp EEEETTTTEEEEEETTT----------T--EEEEEETTSCS-C-EEEEEC-------------CSCEEEEEEE--TTEEE
T ss_pred EEEccccCEEEEEECCC----------C--EEEEEcCCCCc-e-EEeecc-------------CCCceEEEEE--CCEEE
Confidence 99999988887764432 1 25555554431 1 111100 0122367774 34455
Q ss_pred EEe-CCCcEEEEecCCC
Q 003087 246 TSD-TNGCLYIFEMDKD 261 (849)
Q Consensus 246 s~s-~Dgtv~LWd~~~~ 261 (849)
.++ ..++|...|..++
T Consensus 222 ~tD~~~~~I~~~dk~tg 238 (628)
T 4a0p_A 222 WTDWSRRSIERANKTSG 238 (628)
T ss_dssp EEETTTTEEEEEETTTC
T ss_pred EecCCCCEEEEEECCCC
Confidence 455 4778877776544
No 318
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=86.11 E-value=3.5 Score=48.02 Aligned_cols=80 Identities=8% Similarity=-0.011 Sum_probs=44.6
Q ss_pred CCcEEEEecC-CccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcc
Q 003087 75 THTVYFFKAN-GEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGL 153 (849)
Q Consensus 75 dgtIrlWd~~-g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~ 153 (849)
+|+|+-||+. |+.+.+..... ++. +.........+++++.||.|+.+|..+|+....+.
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~~-----~~~-------~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~-------- 524 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEHL-----PLW-------AGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQ-------- 524 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESS-----CCC-------SCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE--------
T ss_pred cceEEEEECCCCCEEEEecCCC-----CCc-------ccceEeCCCEEEEECCCCcEEEEECCCCCEEEEec--------
Confidence 5778888875 66655443211 010 00001112246677899999999999888653322
Q ss_pred eeccccCCceEEEEEcCCCceEEE
Q 003087 154 TLRRQFPQNVICTDYHPELSLLSV 177 (849)
Q Consensus 154 ~l~~~~~~~V~svafsPdg~lLas 177 (849)
+.+. ....-+.|..||+..++
T Consensus 525 -~~~g--~~a~P~~y~~~G~qYv~ 545 (582)
T 1flg_A 525 -TGSG--IVSPPITWEQDGEQYLG 545 (582)
T ss_dssp -CSSC--CCSCCEEEEETTEEEEE
T ss_pred -CCCC--cccCceEEEECCEEEEE
Confidence 1111 11233778899986544
No 319
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=81.77 E-value=9.8 Score=42.87 Aligned_cols=30 Identities=20% Similarity=0.193 Sum_probs=24.0
Q ss_pred EEEEEECCCCC-EEEEEeCCCcEEEEecCCc
Q 003087 57 SIYGAWSESHD-VLGIVDDTHTVYFFKANGE 86 (849)
Q Consensus 57 v~~vafSPDG~-~LAs~~~dgtIrlWd~~g~ 86 (849)
-+.|+|.|||+ .|.++...|.|++++.+|.
T Consensus 16 P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~ 46 (463)
T 2wg3_C 16 PVGALHSGDGSQRLFILEKEGYVKILTPEGE 46 (463)
T ss_dssp EEEEECCSSSSCCEEEEETTTEEEEECTTSC
T ss_pred ceEEEECCCCCeEEEEEeCCceEEEEeCCCC
Confidence 46899999996 4556678899999987664
No 320
>3k8p_D Protein transport protein SEC39; intracellular trafficking, DSL1 complex, multisubunit tethering complex, snare proteins; 2.60A {Saccharomyces cerevisiae}
Probab=79.78 E-value=4.4 Score=47.17 Aligned_cols=203 Identities=16% Similarity=0.176 Sum_probs=82.2
Q ss_pred cHHHHHHHHHHcCCcchHHHHHHHCCCCccHHHH-HHHhhCCCCCCcccccccCCC---CCCCCCccCccccch----hh
Q 003087 529 PIHEAGVNLAESGKIGALNLLFKRHPYSLASSVL-QILAAIPETVPVQTYTQLLPG---RSPPMTVAMREEDWV----EC 600 (849)
Q Consensus 529 ~lv~~A~~~A~~g~i~aL~~L~~rh~~~l~p~~l-~ILs~lPEt~~P~~Y~~LLP~---~~~~~~~~~r~~Dw~----e~ 600 (849)
.+..+|.-||+.+|+..+..|+.+... ....+ +|.-.=||--+|....-|... ......-...+.|-+ |.
T Consensus 5 qLylla~vfasraD~~~~~~l~~~~~~--~~~~~~~icvlWPElddP~~l~f~~~~~~~~~~~~~~~~~~~~l~v~Ll~~ 82 (709)
T 3k8p_D 5 QLYLLACIFASRADTRNIKKLSTRLGS--QSKYLEILCVLWPELDDPKNLLFLRELEEEVQSPEGEETTDEDVIVELLES 82 (709)
T ss_dssp -------------------------CC--SHHHHHHHHHHSCTTSCGGGGTHHHHHHHCC--------------------
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhcc--HHHHHHHHHhcccccCCchhhhhhhccchhhcccccCCCCcchHHHHHHcC
Confidence 478899999999999999999988777 33445 667789999999865554110 000000011111211 10
Q ss_pred -hhhhHHhhcCCCccccccccccc-hhhhcccCCCCCChHHHHHHHHHHHHHHHhhcCC-chhHHHHHHHH-HHcCChhH
Q 003087 601 -DKMVRFIRRLPENHEISDQIRTE-PIVRRSLRSLWPSINELTIWYKSRARDIDCYSGQ-LDNCLCLIDFA-CRKGLTEL 676 (849)
Q Consensus 601 -~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~l~~Wy~~RA~~ID~~sG~-~~~al~Ll~~~-~~~g~~~L 676 (849)
...++.|+- ..+- ...++... ..+...+. ..+.+....|++.|..-.++..-. +-.=--|.+.. .......+
T Consensus 83 d~~Li~~vE~-d~~~-~~~R~~~~~~~v~~~l~--~~~~~~~~~wlr~Ril~cne~~~~~~lfy~plw~~~~~~~~~~~f 158 (709)
T 3k8p_D 83 DSSLIPLIES-DTTT-RSNRYHELQEFISKKLN--NKTLENFEEWLRERILICNEMIPETPLLYSVLWETAKSKVLSTKF 158 (709)
T ss_dssp --------------------CGGGHHHHHHHTT--TCCCCSHHHHHHHHHHHHHTTCTTCTTTTHHHHHTCCTTSSCHHH
T ss_pred Ccccceeeec-CcHH-HHHHHHHHHHHHHHHHh--hhhhhhhHHHHHHHheeeccCCCcchhHhhHHHHHhhccccchHH
Confidence 111111110 0000 00111111 11111111 111111222999998877754222 21111222221 11134678
Q ss_pred HHHHH-hHHHHHHhhcccCCCCccccccchHHHhcCChHHHHHHhhCCCCc--h-h-HHHHhhhcccccccc
Q 003087 677 QQFHE-DTSYLYQLIYSDETDGEISFSMSLTAWEQLSDYEKFNTMLKGVKE--E-N-VIKRLRDKAIPFMQS 743 (849)
Q Consensus 677 ~~l~~-~l~~L~~lvye~~~~~~~~~~lsL~~~e~l~~~~~~~~lL~~~~~--~-~-v~~dl~~~v~P~l~~ 743 (849)
-.|.+ -|.||.-++.-.+ ..++..+||+|++.+++.++++...+ + . +..-+.+-++|||.-
T Consensus 159 ~~Wi~gil~PL~h~n~r~~------~~~~i~~fe~m~~~~~~~~~~~~~~~~~~~~~~~~v~~~el~pyl~y 224 (709)
T 3k8p_D 159 IGWVEGVLKPLDHLNKRLH------LIFKINEWEKMPDSELFKIIFDGVEDMQGYIGIADVIEDELAPTLSY 224 (709)
T ss_dssp HHHHHHTHHHHHHHHHHTT------CCCCHHHHHHSCHHHHHHHHCC-----------CHHHHHTHHHHHHH
T ss_pred HHHHHHhhhhHHHHhhhcC------CceeHHHHhcCCHHHHHHHHhccccccccchhHHHHHHHHhhhHhhc
Confidence 89997 7999999887743 35889999999999999999877654 2 2 234467778999865
No 321
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=79.00 E-value=1.2e+02 Score=38.92 Aligned_cols=233 Identities=10% Similarity=0.095 Sum_probs=108.5
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEecCCccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCC
Q 003087 59 YGAWSESHDVLGIVDDTHTVYFFKANGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQD 138 (849)
Q Consensus 59 ~vafSPDG~~LAs~~~dgtIrlWd~~g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~ 138 (849)
+.--+|..+.||-=. ..+++++|+..+.. +..+.. .. .|.|+. |.....+++. .+..|-.|++..+
T Consensus 70 sAIMnP~~~iiALra-g~~lQiFnl~~k~k--lks~~~--~e---~VvfWk-----Wis~~~l~lV-T~~aVyHW~~~~~ 135 (1630)
T 1xi4_A 70 SAIMNPASKVIALKA-GKTLQIFNIEMKSK--MKAHTM--TD---DVTFWK-----WISLNTVALV-TDNAVYHWSMEGE 135 (1630)
T ss_pred hhccCCCcceEEEec-CCeEEEeehHHhhh--hccccc--CC---CceEEE-----ecCCCeeEEE-cCCeEEEeccCCC
Confidence 455678888888765 57899999975431 111111 11 233421 2222234443 3456888998542
Q ss_pred CC-cccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceecccc
Q 003087 139 PS-ASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIE 217 (849)
Q Consensus 139 ~~-~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~ 217 (849)
.. ...+. .+-+|.+ ..|-.-.-+|++++++..|-....+ .-.| .+.|+.+.... ++...+..
T Consensus 136 s~P~k~fd-----R~~~L~~---~QIinY~~d~~~kW~~l~gi~~~~~----~v~G--~mQLyS~er~~--sQ~iegha- 198 (1630)
T 1xi4_A 136 SQPVKMFD-----RHSSLAG---CQIINYRTDAKQKWLLLTGISAQQN----RVVG--AMQLYSVDRKV--SQPIEGHA- 198 (1630)
T ss_pred CccHHHHh-----cchhccc---CeeEEeeeCCCCCeEEEEeeccCCC----cccc--eeeeeeccccc--chhhhHhH-
Confidence 21 12222 1112321 2477888899999998877532100 0113 36777665431 11111110
Q ss_pred ceee--ccCCCccccccceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEE
Q 003087 218 GLYC--EPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITD 295 (849)
Q Consensus 218 ~~~~--~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~ 295 (849)
+.|. +..|..+...+.+.+.- ....|+++|=++......-..|+.-... + .+.|+.. . +-+..
T Consensus 199 ~~F~~~~~~~~~~~~~l~~f~~~--------~~~g~kLhi~Ei~~~~~~~~~f~kk~~~---~--~~~~~~~-~-Dfpv~ 263 (1630)
T 1xi4_A 199 ASFAQFKMEGNAEESTLFCFAVR--------GQAGGKLHIIEVGTPPTGNQPFPKKAVD---V--FFPPEAQ-N-DFPVA 263 (1630)
T ss_pred hhhheeccCCCCCCceEEEEEEe--------cCCCceEEEEecCCCccCCCCCcccccc---c--cCCcccc-c-CcceE
Confidence 0110 11110011112222221 0112688888885430000111110000 0 1233211 1 11233
Q ss_pred EEEec-CCEEEEEEeCCcEEEEEecCCccccccCCCCCCeEEEE
Q 003087 296 FAWWS-DNILILARKSSIITMIDVLSGLKVKETDPKLRGHVFLL 338 (849)
Q Consensus 296 vaws~-D~~la~a~~dgti~lwdl~~~~~l~~~~~~~~g~~~~L 338 (849)
+.-|+ -|.+-+.++-|.|.++|+.||..++. .....++||+.
T Consensus 264 ~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~-~ris~~~iF~~ 306 (1630)
T 1xi4_A 264 MQISEKHDVVFLITKYGYIHLYDLETGTCIYM-NRISGETIFVT 306 (1630)
T ss_pred EEeccccCEEEEEecCceEEEEecccchhhhh-ccccCCceEEe
Confidence 44344 35566788899999999999998773 22334455553
No 322
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=77.99 E-value=45 Score=34.97 Aligned_cols=67 Identities=10% Similarity=0.083 Sum_probs=40.7
Q ss_pred EcCCCCeEEEEe---CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCC--------------CcEEE
Q 003087 18 ISPRGERVAVAA---VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDT--------------HTVYF 80 (849)
Q Consensus 18 fSPdG~~LAsas---~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~d--------------gtIrl 80 (849)
|+++|++|.-.. ++.+-..+.++. . ..++.. -.+--|+|+|+.|..++.. +.|+.
T Consensus 21 ~~~~g~~iy~~n~~d~~~ly~~~~dg~--~-~~~l~~-----~~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~ 92 (302)
T 3s25_A 21 FCESDGEVFFSNTNDNGRLYAMNIDGS--N-IHKLSN-----DTAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCR 92 (302)
T ss_dssp EEEETTEEEEEEGGGTTEEEEEETTSC--S-CEEEEE-----EEEEEEEECSSEEEEEEECC------CCSSCCSEEEEE
T ss_pred EEEeCCEEEEEeCCCCceEEEEcCCCC--C-CEEccC-----CceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEE
Confidence 567899887774 345555554321 1 222221 1234568999999987653 36888
Q ss_pred EecCCccceecc
Q 003087 81 FKANGEEITRFT 92 (849)
Q Consensus 81 Wd~~g~~~~~l~ 92 (849)
.++.|.....+.
T Consensus 93 i~~dg~~~~~l~ 104 (302)
T 3s25_A 93 IKRNGHGSTVLD 104 (302)
T ss_dssp EETTSCCCEEEE
T ss_pred EeCCCCcceEee
Confidence 888877655543
No 323
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=58.22 E-value=40 Score=38.88 Aligned_cols=67 Identities=10% Similarity=-0.110 Sum_probs=39.8
Q ss_pred cccccceEEEEEcCCCCeEEEE-eC----------CeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEe
Q 003087 7 PRKTKKQVSLFISPRGERVAVA-AV----------NQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVD 73 (849)
Q Consensus 7 ~~~~~~v~slafSPdG~~LAsa-s~----------~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~ 73 (849)
.++.+....|+|+|+|.+...- .. +.=.+|......+.....+.......++.++||||+++|-++-
T Consensus 472 ~~~fnsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 472 QNMFNSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp TTCCCCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred cCccCCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 3567889999999999977632 11 0003443332223322222211134679999999999987763
No 324
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=52.84 E-value=23 Score=43.63 Aligned_cols=34 Identities=3% Similarity=0.027 Sum_probs=30.1
Q ss_pred cccceEEEccCCCEEEEEeCCCcEEEEecCCCcc
Q 003087 230 LAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNF 263 (849)
Q Consensus 230 ~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~ 263 (849)
..+.+++.++|..+|.|.+.|+++|+|++.++++
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~ 269 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQC 269 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCe
Confidence 3567788889999999999999999999998865
No 325
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=45.71 E-value=87 Score=36.27 Aligned_cols=62 Identities=11% Similarity=-0.094 Sum_probs=37.0
Q ss_pred ccceEEEEEcCCCCeEEEEeCC------------eEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEE
Q 003087 10 TKKQVSLFISPRGERVAVAAVN------------QVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIV 72 (849)
Q Consensus 10 ~~~v~slafSPdG~~LAsas~~------------~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~ 72 (849)
....-.|+|+|+|.++..- |+ .-.+|-.....+.....+.......++.++|||||++|-+.
T Consensus 475 f~~PDNL~fd~~G~LwI~e-Dg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 475 FNSPDGLGFDKAGRLWILT-DGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CCCEEEEEECTTCCEEEEE-CCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred ccCCcceEECCCCCEEEEe-cCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 4567889999999966543 21 11244322222232222222224678999999999988665
No 326
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=38.06 E-value=73 Score=39.15 Aligned_cols=36 Identities=8% Similarity=0.066 Sum_probs=30.1
Q ss_pred CCEEEEEECCCCCEEEEEeCCCcEEEEecC-Ccccee
Q 003087 55 GASIYGAWSESHDVLGIVDDTHTVYFFKAN-GEEITR 90 (849)
Q Consensus 55 ~~v~~vafSPDG~~LAs~~~dgtIrlWd~~-g~~~~~ 90 (849)
..+.+++.++|..+|.+-+.|+++|+|++. |+.+.+
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t 272 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVET 272 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEee
Confidence 356788999999999999999999999986 655444
No 327
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=37.95 E-value=4.5e+02 Score=29.03 Aligned_cols=64 Identities=14% Similarity=0.109 Sum_probs=39.2
Q ss_pred ccceEEEEEcCCCC--eEEEEeCCeEEEEecCCCC-Ccceeeee---ec-----CCCCEEEEEECCC----CCEEEEEe
Q 003087 10 TKKQVSLFISPRGE--RVAVAAVNQVTILQKDDDY-QEPCGIFN---CT-----GLGASIYGAWSES----HDVLGIVD 73 (849)
Q Consensus 10 ~~~v~slafSPdG~--~LAsas~~~i~iw~~~~~~-~~~~~~~~---~~-----~~~~v~~vafSPD----G~~LAs~~ 73 (849)
....++++|.|||. ++++-..+.|++++..+.. ..++.... .. +......|||+|| |.+.++-+
T Consensus 13 L~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt 91 (463)
T 2wg3_C 13 LRQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYT 91 (463)
T ss_dssp ESSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEE
T ss_pred CCCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEe
Confidence 35678999999996 6665557888888643221 11211111 11 1356789999997 66666543
No 328
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=36.98 E-value=7.1e+02 Score=31.06 Aligned_cols=33 Identities=12% Similarity=0.003 Sum_probs=27.2
Q ss_pred cccceEEEccC------CCEEEEEeC-CCcEEEEecCCCc
Q 003087 230 LAHPKVLISPQ------GKFVATSDT-NGCLYIFEMDKDN 262 (849)
Q Consensus 230 ~~V~~vafSPD------G~~LAs~s~-Dgtv~LWd~~~~~ 262 (849)
..|.+++++|. ++++|.|-+ |++|+|.++++.+
T Consensus 554 ~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~ 593 (1158)
T 3ei3_A 554 HEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFE 593 (1158)
T ss_dssp SCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCC
T ss_pred CceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCC
Confidence 36888999874 479999987 9999999998653
No 329
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=34.63 E-value=6e+02 Score=29.49 Aligned_cols=195 Identities=11% Similarity=0.068 Sum_probs=0.0
Q ss_pred cceEEEEEcCCCCeEEEEeCCeEEEEecCCCCCcceeeee-------ecC--CCCEEEEEECCCCCEEEEEeCCCcEEEE
Q 003087 11 KKQVSLFISPRGERVAVAAVNQVTILQKDDDYQEPCGIFN-------CTG--LGASIYGAWSESHDVLGIVDDTHTVYFF 81 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas~~~i~iw~~~~~~~~~~~~~~-------~~~--~~~v~~vafSPDG~~LAs~~~dgtIrlW 81 (849)
..|.++...++|++.+...++.+.+++...........+. ..+ ...|.++...++|++-+.++..+-|..+
T Consensus 419 ~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~ 498 (758)
T 3ott_A 419 NWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKI 498 (758)
T ss_dssp SSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEE
T ss_pred ceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEE
Q ss_pred ecCCccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCC
Q 003087 82 KANGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQ 161 (849)
Q Consensus 82 d~~g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 161 (849)
|...+.+..+..........+.++....++. +-+++..| +..++..++....+ +..+-...
T Consensus 499 d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~--------lWigt~~G-l~~~~~~~~~~~~~----------~~~gl~~~ 559 (758)
T 3ott_A 499 NPRTREVTKLFADELTGEKSPNYLLCDEDGL--------LWVGFHGG-VMRINPKDESQQSI----------SFGSFSNN 559 (758)
T ss_dssp ETTTTEEEEECTTTSCGGGCEEEEEECTTSC--------EEEEETTE-EEEECC--CCCCBC----------CCCC---C
T ss_pred eCCCCceEEecCCCcCCCcccceEEECCCCC--------EEEEecCc-eEEEecCCCceEEe----------cccCCCcc
Q ss_pred ceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCC
Q 003087 162 NVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQG 241 (849)
Q Consensus 162 ~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG 241 (849)
.|.++... +|++.++. ..+ |..++... ..+..+.- ....+....+....
T Consensus 560 ~i~~i~~~-~g~lWi~t-~~G--------------l~~~~~~~-------------~~~~~~~~--~~~~~~~~~~~~~~ 608 (758)
T 3ott_A 560 EILSMTCV-KNSIWVST-TNG--------------LWIIDRKT-------------MDARQQNM--TNKRFTSLLFDPKE 608 (758)
T ss_dssp CEEEEEEE-TTEEEEEE-SSC--------------EEEEETTT-------------CCEEEC----CCCCCSEEEEETTT
T ss_pred ceEEEEEC-CCCEEEEC-CCC--------------eEEEcCCC-------------ceeEEecC--CCCceeeeEEECCC
Q ss_pred CEEEEEeCCCcEEE
Q 003087 242 KFVATSDTNGCLYI 255 (849)
Q Consensus 242 ~~LAs~s~Dgtv~L 255 (849)
..|.-|+.+|-+.+
T Consensus 609 G~l~fG~~~Gl~~f 622 (758)
T 3ott_A 609 DCVYLGGADGFGIS 622 (758)
T ss_dssp TEEEEECBSEEEEE
T ss_pred CcEEEecCCceEEE
No 330
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=31.58 E-value=5.9e+02 Score=28.43 Aligned_cols=225 Identities=11% Similarity=0.109 Sum_probs=109.2
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEecCCccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCC
Q 003087 59 YGAWSESHDVLGIVDDTHTVYFFKANGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQD 138 (849)
Q Consensus 59 ~vafSPDG~~LAs~~~dgtIrlWd~~g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~ 138 (849)
+.--+|..+.||-=. ..+++++|+..+.. +..+.. ... |.|+ .|..+..+++. .+..|..|++..+
T Consensus 70 sAIMnP~~~iiALra-g~~lQiFnle~K~k--lks~~~--~e~---VvfW-----kWis~~~l~lV-T~taVyHWsi~~~ 135 (494)
T 1bpo_A 70 SAIMNPASKVIALKA-GKTLQIFNIEMKSK--MKAHTM--TDD---VTFW-----KWISLNTVALV-TDNAVYHWSMEGE 135 (494)
T ss_dssp EEEECSSSSCEEEEE-TTEEEEEETTTTEE--EEEEEC--SSC---CCEE-----EEEETTEEEEE-CSSEEEEEESSSS
T ss_pred eeeeCCCCcEEEEec-CCeEEEEchHHhhh--hcceec--CCC---ceEE-----EecCCCeEEEE-cCCeeEEecccCC
Confidence 566788889888765 57999999986542 111110 011 1221 12112234443 3456888998642
Q ss_pred CC-cccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCC-CccccCCCCCCceeeEEEecCCcCcccceeccc
Q 003087 139 PS-ASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDT-SSLTSSGNSGPCCISLWRRCHNLELEQLYTTQI 216 (849)
Q Consensus 139 ~~-~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t-~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~ 216 (849)
.. ...++ .+-+|.+ ..|-.-.-++|+++++..|-... .++ .| .+.|+.+.... ++..
T Consensus 136 s~P~kvFd-----R~~~L~~---~QIInY~~d~~~kW~~l~GI~~~~~~v-----~G--~mQLYS~er~~--sQ~i---- 194 (494)
T 1bpo_A 136 SQPVKMFD-----RHSSLAG---CQIINYRTDAKQKWLLLTGISAQQNRV-----VG--AMQLYSVDRKV--SQPI---- 194 (494)
T ss_dssp CCCEEEEE-----CCGGGTT---CEEEEEEECTTSSEEEEEEEEEETTEE-----EE--EEEEEESTTCC--EEEE----
T ss_pred CCchhhee-----cchhccc---ceEEEEEECCCCCeEEEEeecccCCcc-----cc--eEEEeeccccc--cchh----
Confidence 21 12222 1112221 24778888999999987764210 000 12 25666655431 1111
Q ss_pred cceeeccCCCccccccceEEEccCC-----CEEEEEeC---CCcEEEEecCCCcccccccccccccccccccccCCCCCC
Q 003087 217 EGLYCEPKGHEVQLAHPKVLISPQG-----KFVATSDT---NGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTK 288 (849)
Q Consensus 217 ~~~~~~~~g~~h~~~V~~vafSPDG-----~~LAs~s~---Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~ 288 (849)
.| |...- ..|-.+| ++++-+.. .++++|-++......-..|+.-... + .+.|+.
T Consensus 195 -------eG--haa~F--~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vd---v--~fppe~-- 256 (494)
T 1bpo_A 195 -------EG--HAASF--AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVD---V--FFPPEA-- 256 (494)
T ss_dssp -------CC--SEEEE--EEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEE---C--CCCTTS--
T ss_pred -------ee--eeeee--EEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeee---e--eCCccc--
Confidence 11 21111 0111122 22333332 3788888885430000111110000 0 122321
Q ss_pred CCCCcEEEEEec-CCEEEEEEeCCcEEEEEecCCccccccCCCCCCeEEE
Q 003087 289 PISDITDFAWWS-DNILILARKSSIITMIDVLSGLKVKETDPKLRGHVFL 337 (849)
Q Consensus 289 ~~~~v~~vaws~-D~~la~a~~dgti~lwdl~~~~~l~~~~~~~~g~~~~ 337 (849)
..+-+..+--|+ -|.+-+.++-|.|.++|+.|+..++.. ....+++|+
T Consensus 257 ~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~n-rIs~~~iF~ 305 (494)
T 1bpo_A 257 QNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMN-RISGETIFV 305 (494)
T ss_dssp TTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEE
T ss_pred ccCceeEEEecccCCEEEEEecCceEEEEecccceeeeee-cccCCceEE
Confidence 112244555555 355668889999999999999987731 233455555
No 331
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=30.81 E-value=98 Score=36.63 Aligned_cols=31 Identities=10% Similarity=0.250 Sum_probs=25.3
Q ss_pred ccCCCEEEEEeCCCcEEEEecCCCcccccccc
Q 003087 238 SPQGKFVATSDTNGCLYIFEMDKDNFSLSKFA 269 (849)
Q Consensus 238 SPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~ 269 (849)
.++.++|+|...|.++|+|++.++++ +....
T Consensus 228 ~~~~~fLftL~~Dh~LRiWsL~t~~l-v~t~D 258 (729)
T 3f7f_A 228 LFHERYLIVLTQNCHLKIWDLTSFTL-IQDYD 258 (729)
T ss_dssp EETTTEEEEEETTCEEEEEETTTTEE-EEEEE
T ss_pred ccCCcEEEEEEcCCeEEEEEcCCCce-EEeec
Confidence 44789999999999999999999864 44433
No 332
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=30.33 E-value=1.1e+02 Score=35.42 Aligned_cols=74 Identities=9% Similarity=0.060 Sum_probs=48.2
Q ss_pred cceEEEEEcCCCCeEEEEe--CCeEEEEecCC-------CCCcceeee--eecCCCCEEEEEECCCCCEEEEEeCCCcEE
Q 003087 11 KKQVSLFISPRGERVAVAA--VNQVTILQKDD-------DYQEPCGIF--NCTGLGASIYGAWSESHDVLGIVDDTHTVY 79 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas--~~~i~iw~~~~-------~~~~~~~~~--~~~~~~~v~~vafSPDG~~LAs~~~dgtIr 79 (849)
+....+.+||||+++.+++ +.++.+.+... +.-.+.... +.+-.-.-.-.+|.++|.-..|---|..|-
T Consensus 323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqvv 402 (638)
T 3sbq_A 323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQVV 402 (638)
T ss_dssp SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEE
T ss_pred CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceEE
Confidence 3456789999999998886 57899988651 000011001 111112335689999996556677899999
Q ss_pred EEecC
Q 003087 80 FFKAN 84 (849)
Q Consensus 80 lWd~~ 84 (849)
-|++.
T Consensus 403 kWni~ 407 (638)
T 3sbq_A 403 KWNME 407 (638)
T ss_dssp EEEHH
T ss_pred EEecc
Confidence 99985
No 333
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=23.20 E-value=45 Score=41.88 Aligned_cols=37 Identities=3% Similarity=0.044 Sum_probs=31.1
Q ss_pred cccceEEEccCCCEEEEEeCCCcEEEEecCCCcccccc
Q 003087 230 LAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSK 267 (849)
Q Consensus 230 ~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~ 267 (849)
..+-+++..+|.++|.|.+.|+++|+|++.++++ +..
T Consensus 238 ~~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~-v~t 274 (1139)
T 4fhn_B 238 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQC-VET 274 (1139)
T ss_dssp TCBSCCEEETTTTEEEEEBTTCEEEEEETTTTEE-EEE
T ss_pred ceeEEeeccCCccEEEEEeCCCEEEEEECCCCCe-EEe
Confidence 3566778889999999999999999999998865 444
No 334
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=23.08 E-value=54 Score=25.49 Aligned_cols=37 Identities=16% Similarity=0.344 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHcccCHHHHHHHHHHhCCChhHHHHHH
Q 003087 388 RSVPEMYNILISHRNYQTAIDFANYHGLDTDEVLKSQ 424 (849)
Q Consensus 388 ~tp~e~~~~~i~~~~~~~A~~lA~~~~ld~d~Vyk~~ 424 (849)
.|-+++|+-.-.++=+=.-..||..||.++|.||+.-
T Consensus 10 ~~e~~lL~yIr~sGGildI~~~a~kygV~kdeV~~~L 46 (59)
T 2xvc_A 10 ITERELLDYIVNNGGFLDIEHFSKVYGVEKQEVVKLL 46 (59)
T ss_dssp CCHHHHHHHHHHTTSEEEHHHHHHHHCCCHHHHHHHH
T ss_pred ccHHHHHHHHHHcCCEEeHHHHHHHhCCCHHHHHHHH
Confidence 4667777777777777788899999999999999853
No 335
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=21.89 E-value=1.4e+03 Score=29.55 Aligned_cols=220 Identities=12% Similarity=0.190 Sum_probs=106.1
Q ss_pred Ccccc-cceEEEEEcCCCCeEEEEeCCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecC
Q 003087 6 QPRKT-KKQVSLFISPRGERVAVAAVNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKAN 84 (849)
Q Consensus 6 ~~~~~-~~v~slafSPdG~~LAsas~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~ 84 (849)
+|.|| -.--+.-..|..+.||.-.+.++.|++.+.. ...+.++. ...|.-=.|= +-+.||-... ..|+-|++.
T Consensus 60 ~~~rrpi~AdsAIMnP~~~iiALrag~~lQiFnl~~k--~klks~~~--~e~VvfWkWi-s~~~l~lVT~-~aVyHW~~~ 133 (1630)
T 1xi4_A 60 NPIRRPISADSAIMNPASKVIALKAGKTLQIFNIEMK--SKMKAHTM--TDDVTFWKWI-SLNTVALVTD-NAVYHWSME 133 (1630)
T ss_pred CcccccccchhhccCCCcceEEEecCCeEEEeehHHh--hhhccccc--CCCceEEEec-CCCeeEEEcC-CeEEEeccC
Confidence 45444 3345677899999999888889999997642 22333332 2334333443 3456665554 369999997
Q ss_pred Ccc-ceecccccccc-cccEEEEEecCCcccccccceeEEE--EeCCCcEEEEEecCCCCcccccccccCCccee-----
Q 003087 85 GEE-ITRFTNKHLKV-SLPIIGLIAQDETDVQRSCLCSFTV--FTSDGFLHQIEISQDPSASISSASASSSGLTL----- 155 (849)
Q Consensus 85 g~~-~~~l~~~~~~~-~~~V~~l~fs~~~~~~~s~~~~~~~--~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l----- 155 (849)
|.. ...+...|... +..|.+-..+++. .|.....+.. ..-.|.+.++.+..+..+ .++ +|.-+|
T Consensus 134 ~~s~P~k~fdR~~~L~~~QIinY~~d~~~--kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ-~ie----gha~~F~~~~~ 206 (1630)
T 1xi4_A 134 GESQPVKMFDRHSSLAGCQIINYRTDAKQ--KWLLLTGISAQQNRVVGAMQLYSVDRKVSQ-PIE----GHAASFAQFKM 206 (1630)
T ss_pred CCCccHHHHhcchhcccCeeEEeeeCCCC--CeEEEEeeccCCCcccceeeeeecccccch-hhh----HhHhhhheecc
Confidence 631 11111112111 2345444444433 2311000100 024578899998765543 333 332222
Q ss_pred ccc-cCCceEEEEEc-CCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCc-ccceeccccceeeccCCCcccccc
Q 003087 156 RRQ-FPQNVICTDYH-PELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLEL-EQLYTTQIEGLYCEPKGHEVQLAH 232 (849)
Q Consensus 156 ~~~-~~~~V~svafs-Pdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~-~~l~~~~~~~~~~~~~g~~h~~~V 232 (849)
.|. .+..+.|++.- |.|. .+.+=++...... .++.. .....+..+.. ..+--
T Consensus 207 ~~~~~~~~l~~f~~~~~~g~----------------------kLhi~Ei~~~~~~~~~f~k-k~~~~~~~~~~--~~Dfp 261 (1630)
T 1xi4_A 207 EGNAEESTLFCFAVRGQAGG----------------------KLHIIEVGTPPTGNQPFPK-KAVDVFFPPEA--QNDFP 261 (1630)
T ss_pred CCCCCCceEEEEEEecCCCc----------------------eEEEEecCCCccCCCCCcc-ccccccCCccc--ccCcc
Confidence 111 01113332221 1111 1333333221000 01100 00011111111 11222
Q ss_pred ceEEEccCCCEEEEEeCCCcEEEEecCCCcc
Q 003087 233 PKVLISPQGKFVATSDTNGCLYIFEMDKDNF 263 (849)
Q Consensus 233 ~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~ 263 (849)
-+|..||.-..+....--|-|+++|+.++.+
T Consensus 262 v~~~vs~k~g~iy~itk~G~~~~~d~~t~~~ 292 (1630)
T 1xi4_A 262 VAMQISEKHDVVFLITKYGYIHLYDLETGTC 292 (1630)
T ss_pred eEEEeccccCEEEEEecCceEEEEecccchh
Confidence 3788899888888899999999999999865
No 336
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=21.68 E-value=3.3e+02 Score=28.88 Aligned_cols=29 Identities=21% Similarity=0.334 Sum_probs=21.2
Q ss_pred CCCEEEEEeCCCcEEEEecCCCcccccccc
Q 003087 240 QGKFVATSDTNGCLYIFEMDKDNFSLSKFA 269 (849)
Q Consensus 240 DG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~ 269 (849)
++..+.+++.+|++.--|+.+++. ++.+.
T Consensus 110 ~~g~Vy~Gs~~g~l~ald~~tG~~-~W~~~ 138 (339)
T 2be1_A 110 EDEKVYTGSMRTIMYTINMLNGEI-ISAFG 138 (339)
T ss_dssp CCEEEEECEEEEEEEEEETTTCCE-EEEES
T ss_pred cCCEEEEEecCCEEEEEECCCCcE-EEEEe
Confidence 345667788899999899888865 45544
No 337
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=20.32 E-value=1.1e+03 Score=27.60 Aligned_cols=31 Identities=3% Similarity=0.068 Sum_probs=22.5
Q ss_pred CCcEEEEEecCCEEEEEEeCCc--EEEEEecCC
Q 003087 291 SDITDFAWWSDNILILARKSSI--ITMIDVLSG 321 (849)
Q Consensus 291 ~~v~~vaws~D~~la~a~~dgt--i~lwdl~~~ 321 (849)
..+.+++|..|..+++...+|. |.++++.++
T Consensus 350 ~~l~~~~~~~~~l~~~~~~~~~~~l~~~~~~~g 382 (711)
T 4hvt_A 350 EVFNFISTTKDRVFLATYDNVVAKVVTFTLENE 382 (711)
T ss_dssp EEEEEEEECSSCEEEEEEETTEEEEEEECEETT
T ss_pred CeEEEEEEECCEEEEEEEECCEEEEEEEECCCC
Confidence 3467899988876677778874 667777666
No 338
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=20.24 E-value=59 Score=31.44 Aligned_cols=31 Identities=19% Similarity=0.144 Sum_probs=27.2
Q ss_pred ccCCHHHHHHHHHcccCHHHHHHHHHHhCCC
Q 003087 386 SERSVPEMYNILISHRNYQTAIDFANYHGLD 416 (849)
Q Consensus 386 ~~~tp~e~~~~~i~~~~~~~A~~lA~~~~ld 416 (849)
---..+++.+.+++.++|.+|..+|++||++
T Consensus 101 ~lGdv~~~i~lL~~~~r~~eA~~~A~t~g~~ 131 (177)
T 3mkq_B 101 YNNSTKERSSIFAEGGSLPLAYAVAKANGDE 131 (177)
T ss_dssp HHTCHHHHHHHHHHTTCHHHHHHHHHHTTCH
T ss_pred HcCCHHHHHHHHHHCCChHHHHHHHHHcCcH
Confidence 3446789999999999999999999999984
Done!