BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003088
(849 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P42762|CLPD_ARATH Chaperone protein ClpD, chloroplastic OS=Arabidopsis thaliana
GN=CLPD PE=1 SV=1
Length = 945
Score = 1240 bits (3208), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 611/809 (75%), Positives = 694/809 (85%), Gaps = 7/809 (0%)
Query: 40 FFNISMISHKVQFFHSNYTSNNNNCNPICARKRRKIIPISSVFERFTERAVKAVIFSQRE 99
+ IS+ + + F + T N RKR+K PIS+VFERFTERA++A+IFSQ+E
Sbjct: 42 YLGISLSNRTIHRFSTTPT----NLRRFPQRKRKKFTPISAVFERFTERAIRAIIFSQKE 97
Query: 100 AKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAVVSIWHSTNNQDTDDAAAQ 159
AKSLGKDMV+TQHLLLGLIAEDR P GFL SGITIDKAREAV SIW N+ D+ A
Sbjct: 98 AKSLGKDMVYTQHLLLGLIAEDRDPQGFLGSGITIDKAREAVWSIWDEANS-DSKQEEAS 156
Query: 160 GKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLG 219
+S + MPFSISTKRVFEAAVEYSR+ +IAPEHIA+GLFTVDDGSAGRVLKRLG
Sbjct: 157 STSYSKSTDMPFSISTKRVFEAAVEYSRTMDCQYIAPEHIAVGLFTVDDGSAGRVLKRLG 216
Query: 220 VDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSI-SGKTAALKSPGRTRASALEQFCV 278
++N L A A++RL+GE+AK+GREPS + S SG+ A G+ + LEQFCV
Sbjct: 217 ANMNLLTAAALTRLKGEIAKDGREPSSSSKGSFESPPSGRIAGSGPGGKKAKNVLEQFCV 276
Query: 279 DLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQA 338
DLTARASE LIDPVIGRE E+QR+IQILCRRTKNNPILLGE+GVGKTAIAEGLAI I +A
Sbjct: 277 DLTARASEGLIDPVIGREKEVQRVIQILCRRTKNNPILLGEAGVGKTAIAEGLAISIAEA 336
Query: 339 EVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSG 398
P FLL+KRIMSLD+GLLMAGAKERGELEARVT LISE++KSG VILFIDEVHTLIGSG
Sbjct: 337 SAPGFLLTKRIMSLDIGLLMAGAKERGELEARVTALISEVKKSGKVILFIDEVHTLIGSG 396
Query: 399 TVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPS 458
TVGRGNKG+GLDI+NLLKPSLGRGELQCIASTT DE R+QFEKDKALARRFQPVLI+EPS
Sbjct: 397 TVGRGNKGSGLDIANLLKPSLGRGELQCIASTTLDEFRSQFEKDKALARRFQPVLINEPS 456
Query: 459 QEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAH 518
+EDAV+ILLGLREKYEAHHNCK+T+EAI+AAV+LS+RYI+DR+LPDKAIDL+DEAGSRA
Sbjct: 457 EEDAVKILLGLREKYEAHHNCKYTMEAIDAAVYLSSRYIADRFLPDKAIDLIDEAGSRAR 516
Query: 519 IELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVES 578
IE F++KKE CILSKPP+DYWQEI+TVQAMHEVV SR K DD A ++ E+V ES
Sbjct: 517 IEAFRKKKEDAICILSKPPNDYWQEIKTVQAMHEVVLSSRQKQDDGDAISDESGELVEES 576
Query: 579 SLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAV 638
SLP A+ DDEP +VGPDDIAAVAS+WSGIPVQQITADERMLL+ LE+QL+ RV+GQDEAV
Sbjct: 577 SLPPAAGDDEPILVGPDDIAAVASVWSGIPVQQITADERMLLMSLEDQLRGRVVGQDEAV 636
Query: 639 AAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEY 698
AAISRAVKRSRVGLKDP+RP AAMLFCGPTGVGKTEL K+LAA YFGSE SMLRLDMSEY
Sbjct: 637 AAISRAVKRSRVGLKDPDRPIAAMLFCGPTGVGKTELTKALAANYFGSEESMLRLDMSEY 696
Query: 699 MERHTVSKLIGSPPGYVGYEEGGLLTEAIRRRPFTLLLLDEIEKAHPDIFNILLQVFEDG 758
MERHTVSKLIGSPPGYVG+EEGG+LTEAIRRRPFT++L DEIEKAHPDIFNILLQ+FEDG
Sbjct: 697 MERHTVSKLIGSPPGYVGFEEGGMLTEAIRRRPFTVVLFDEIEKAHPDIFNILLQLFEDG 756
Query: 759 HLTDSHGRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDN-ESTSYAGMKTLVVEEL 817
HLTDS GRRVSFKNALI+MTSNVGS IAKGRHGSIGF+L+D+ E+ SY GMK LVVEEL
Sbjct: 757 HLTDSQGRRVSFKNALIIMTSNVGSLAIAKGRHGSIGFILDDDEEAASYTGMKALVVEEL 816
Query: 818 KAYFRPELLNRIDEVVVFRSLEKAQVCQL 846
K YFRPELLNRIDE+V+FR LEKAQ+ ++
Sbjct: 817 KNYFRPELLNRIDEIVIFRQLEKAQMMEI 845
>sp|Q7XL03|CLPD2_ORYSJ Chaperone protein ClpD2, chloroplastic OS=Oryza sativa subsp.
japonica GN=CLPD2 PE=2 SV=2
Length = 937
Score = 1042 bits (2695), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 526/783 (67%), Positives = 631/783 (80%), Gaps = 21/783 (2%)
Query: 76 IPISSVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITID 135
+ + +VFERFTERAVKAV+FSQREA+ +G + V HLLLGL+AEDR P GFL SG+ ++
Sbjct: 65 VVVRAVFERFTERAVKAVVFSQREARGMGDETVAPHHLLLGLVAEDRSPLGFLASGVRVE 124
Query: 136 KAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIA 195
+AREA + + AQ P A +PFS ++KRVFEAAVE+SR+ G NFI+
Sbjct: 125 RAREACRAAVGK-------EGLAQA-PVGLATDVPFSGASKRVFEAAVEFSRNMGCNFIS 176
Query: 196 PEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREP-SLAK-GVREN 253
PEHIALGLF ++D + VLK LGVD + LA A++R+QGELAK+GREP L+ VRE
Sbjct: 177 PEHIALGLFNLNDPTTNNVLKSLGVDSSQLAKQALTRVQGELAKDGREPVGLSSFKVREK 236
Query: 254 SI--SGKTAALKSPGRTR-ASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRT 310
GK+A +K + + SAL FC+DLT RAS LIDPVIGR+ EI+R++QI+CRRT
Sbjct: 237 FTPGGGKSAIVKYSNKNKEKSALALFCLDLTMRASGGLIDPVIGRKDEIERVVQIICRRT 296
Query: 311 KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEAR 370
KNNPILLGE+GVGKTAIAEGLA +I +VP+FL+ KRI+SLD+ LLMAGAKERGELEAR
Sbjct: 297 KNNPILLGEAGVGKTAIAEGLAHKIANGDVPIFLVGKRILSLDVALLMAGAKERGELEAR 356
Query: 371 VTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIAST 430
VT+LI E++K+GDVILFIDEVHTLIGSG GRG+KG GLDI+NLLKP+L RGELQCIAST
Sbjct: 357 VTSLIREVRKAGDVILFIDEVHTLIGSGIAGRGSKGAGLDIANLLKPALARGELQCIAST 416
Query: 431 TQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAV 490
T DEHR F+KDKALARRFQPVL++EPSQEDAV+ILLGLREKYE +H CK+TLE+INAAV
Sbjct: 417 TLDEHRLHFDKDKALARRFQPVLVNEPSQEDAVKILLGLREKYETYHKCKYTLESINAAV 476
Query: 491 HLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAM 550
+LSARYI+DR+LPDKAIDL+DEAGSRA +E FKRKKE+Q ILSK PD+YWQEIR VQ M
Sbjct: 477 YLSARYIADRHLPDKAIDLIDEAGSRARMESFKRKKEEQCSILSKSPDEYWQEIRAVQNM 536
Query: 551 HEVVQGSRLKYDDVVASMGDTS--EIVVESSLPSAS----DDDEPAVVGPDDIAAVASLW 604
HEV +++KY D E+V E AS D+P++VG ++IA V SLW
Sbjct: 537 HEVALTNKVKYSLNQNDQEDAVDIELVGEDKTSPASMLSTSTDKPSLVGSEEIARVTSLW 596
Query: 605 SGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLF 664
SGIPVQQ+TADER LLVGL+++L+KRVIGQD+AV AIS+AVKRSRVGL DP+RP A ++F
Sbjct: 597 SGIPVQQLTADERKLLVGLDDELRKRVIGQDDAVLAISKAVKRSRVGLNDPDRPIATLIF 656
Query: 665 CGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLT 724
CGPTGVGKTEL K+LAA YFGSES+ +RLDMSEYMERH VSKLIGSPPGY+G+ EGG LT
Sbjct: 657 CGPTGVGKTELTKALAASYFGSESATVRLDMSEYMERHAVSKLIGSPPGYMGFGEGGTLT 716
Query: 725 EAIRRRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGST 784
EA+RR+PFT++LLDEIEKAHPDIFNILLQ+FEDGHLTDS GRRVSFKN LIVMTSNVGST
Sbjct: 717 EAVRRKPFTVVLLDEIEKAHPDIFNILLQIFEDGHLTDSQGRRVSFKNTLIVMTSNVGST 776
Query: 785 TIAKGRHGSIGFLLE-DNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQV 843
+I+ G+ SIGF + D E SYA MK+LV+EELKA+FRPELLNRIDEVVVF LEK Q+
Sbjct: 777 SISNGKR-SIGFQTQTDTEEKSYAAMKSLVMEELKAFFRPELLNRIDEVVVFHPLEKTQM 835
Query: 844 CQL 846
+
Sbjct: 836 LAI 838
>sp|Q6H795|CLPD1_ORYSJ Chaperone protein ClpD1, chloroplastic OS=Oryza sativa subsp.
japonica GN=CLPD1 PE=2 SV=1
Length = 938
Score = 1032 bits (2668), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 524/773 (67%), Positives = 622/773 (80%), Gaps = 21/773 (2%)
Query: 82 FERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAV 141
FERFTERAVKAV+ SQREAK LG+ V +HLLLGLIAEDR GFL SGI I++ARE
Sbjct: 74 FERFTERAVKAVVLSQREAKGLGEGAVAPRHLLLGLIAEDRSAGGFLSSGINIERAREEC 133
Query: 142 VSIWHSTNNQDTDDAAAQGKPFSSAAKM--PFSISTKRVFEAAVEYSRSRGYNFIAPEHI 199
I D P S +M PFS S KRVFE AVE+SR+ G +FI+PEH+
Sbjct: 134 RGIGAR------DLTPGAPSPSGSGLEMDIPFSGSCKRVFEVAVEFSRNMGCSFISPEHL 187
Query: 200 ALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSIS--- 256
AL LFT+DD + +L+ LG D + LA+VA++RLQ ELAK+ REP+ A + S
Sbjct: 188 ALALFTLDDPTTNSLLRSLGADPSQLASVALTRLQAELAKDCREPAGASSFKVPKKSPAG 247
Query: 257 -GKTAALKS-PGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP 314
G++A KS + AL+QFC+DLT +AS IDP+IGRE EI+R++QI+CRRTKNNP
Sbjct: 248 AGRSAFSKSLNSKKEKGALDQFCLDLTTQASGGFIDPIIGREEEIERVVQIICRRTKNNP 307
Query: 315 ILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTL 374
ILLGE+GVGKTAIAEGLA+RI +VP++L++KRIMSLD+GLL+AGAKERGELE+RVT+L
Sbjct: 308 ILLGEAGVGKTAIAEGLALRIANGDVPIYLVAKRIMSLDVGLLIAGAKERGELESRVTSL 367
Query: 375 ISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDE 434
I E++++GDVILFIDEVH LIGSGTVG+G KG GLDI NLLKP L RGELQCIA+TT DE
Sbjct: 368 IREVREAGDVILFIDEVHNLIGSGTVGKG-KGAGLDIGNLLKPPLARGELQCIAATTLDE 426
Query: 435 HRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSA 494
HR FEKDKALARRFQPVL+ EPSQ+DAV+ILLGLREKYE +H CKFTLEAINAAV+LSA
Sbjct: 427 HRMHFEKDKALARRFQPVLVEEPSQDDAVKILLGLREKYETYHKCKFTLEAINAAVYLSA 486
Query: 495 RYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVV 554
RYI DR LPDKAIDL+DEAGSRA +E F RKKE Q+ IL K PD+YWQEIR Q MHEVV
Sbjct: 487 RYIPDRQLPDKAIDLIDEAGSRARMESFNRKKEGQSSILLKSPDEYWQEIRAAQNMHEVV 546
Query: 555 QGSRLKY----DDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQ 610
+++KY ++ A++ SE + E L S +EP VVG ++IA VASLWSGIPVQ
Sbjct: 547 SSNQMKYSPRQENGSAAIKAPSEDMNE--LTSELQVEEPIVVGTEEIARVASLWSGIPVQ 604
Query: 611 QITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGV 670
Q+TAD+R LLVGL+ +L+KRVIGQD+AV AISRAVKRSRVGL DP+RP A +LFCGPTGV
Sbjct: 605 QLTADDRKLLVGLDGELRKRVIGQDDAVMAISRAVKRSRVGLNDPDRPIATLLFCGPTGV 664
Query: 671 GKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRRR 730
GKTEL K+LAA YFGSES+MLRLDMSEYMERHTVSKLIGSPPGY+GY E G LTEA+RR+
Sbjct: 665 GKTELTKALAASYFGSESAMLRLDMSEYMERHTVSKLIGSPPGYIGYGETGTLTEAVRRK 724
Query: 731 PFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKGR 790
PFT++LLDEIEKAHPDIFNILLQ+FEDGHL+DS GRRVSFKN LIVMTSN+GST+I+KGR
Sbjct: 725 PFTVVLLDEIEKAHPDIFNILLQIFEDGHLSDSQGRRVSFKNTLIVMTSNIGSTSISKGR 784
Query: 791 HGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQV 843
S+GF+ ED ES+SY MK+LV+EELKA+FRPELLNRIDE+VVFR LEK Q+
Sbjct: 785 R-SMGFMTEDTESSSYVAMKSLVMEELKAFFRPELLNRIDEMVVFRPLEKTQM 836
>sp|Q9TM05|CLPC_CYACA ATP-dependent Clp protease ATP-binding subunit clpA homolog
OS=Cyanidium caldarium GN=clpC PE=3 SV=1
Length = 854
Score = 698 bits (1802), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/809 (46%), Positives = 521/809 (64%), Gaps = 78/809 (9%)
Query: 52 FFHSNYTSNNNNCNPICARKRRKIIPISSVFERFTERAVKAVIFSQREAKSLGKDMVFTQ 111
F + T N N +C ++ ++FERFTE+AVK ++ +Q EA+ LG + V T+
Sbjct: 9 FLKAMLTLLNIKGNNMCWAHKK------NMFERFTEKAVKVIMLAQEEARRLGHNFVGTE 62
Query: 112 HLLLGLIAEDR--HPNGFLESGITIDKAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKM 169
+LLG++ E GIT+ AR V I +G F A ++
Sbjct: 63 QILLGILGEGTGLAAKALKSMGITLKDARIEVEKII------------GRGSGFV-AIEI 109
Query: 170 PFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVA 229
PF+ K++ E A+E SR +N++ EH+ LGL +G A RVL+ LGVD+ L +
Sbjct: 110 PFTPRAKKILELAIEESRILTHNYVGTEHLLLGLIKEGEGVAARVLENLGVDLPKLRS-N 168
Query: 230 VSRLQGELAKEGREPSLAKGVRENSISGKTAALKSPGRTRASALEQFCVDLTARASEELI 289
+ R+ GE + + + + GR++ LE+F +LT A E +
Sbjct: 169 IIRMIGE-------------------TSEVSVGATSGRSKVPTLEEFGTNLTQMAVEGKL 209
Query: 290 DPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRI 349
DPV+GR EI+R++QIL RRTKNNP+L+GE GVGKTAIAEGLA RI+ EVP L K++
Sbjct: 210 DPVVGRAKEIERVVQILGRRTKNNPVLIGEPGVGKTAIAEGLAQRIINNEVPDTLEDKKV 269
Query: 350 MSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGL 409
++LD+ LL+AG K RGE E R+ ++ EI+ + +VIL IDEVHTLIG+G +
Sbjct: 270 ITLDVSLLVAGTKYRGEFEERLKKIMDEIRMADNVILVIDEVHTLIGAGAAE-----GAI 324
Query: 410 DISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGL 469
D +N+LKP+L RGELQCI +TT +E+R EKD AL RRFQPV++ EP+ E+ + IL GL
Sbjct: 325 DAANILKPALARGELQCIGATTLEEYRKHIEKDAALERRFQPVMVEEPTVEETIEILRGL 384
Query: 470 REKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQ 529
R++YEAHH K + AI AA LS +YI+DR+LPDKAIDLVDEA SR + +K
Sbjct: 385 RDRYEAHHRLKISDSAIVAAAKLSDQYIADRFLPDKAIDLVDEASSRVRLMNYKL----- 439
Query: 530 TCILSKPPDDYW--QEIRTVQAM-HEVV------QGSRLKYDDV-----VASMGDTSEIV 575
PP + +E+R +Q + +E++ + S+ + ++ +A++ +
Sbjct: 440 ------PPSAEYLDEELRHIQKIKNELIRSGDFEEASQFREREIEVKVQMAALMKAKKEA 493
Query: 576 VESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQD 635
+E L P +V DDIA + S W+GIPV ++T E L+ +EE L R++GQ+
Sbjct: 494 IEEELAL-----NPPIVNEDDIANIVSSWTGIPVSKLTKSESEKLLHMEETLHSRIVGQN 548
Query: 636 EAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDM 695
EAV A+S+A++R+RVGLK+PNRP A+ +F GPTGVGKTEL K++A+ +FGSE +M+RLDM
Sbjct: 549 EAVIAVSKAIRRARVGLKNPNRPIASFIFSGPTGVGKTELTKAMASYFFGSEEAMVRLDM 608
Query: 696 SEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRRRPFTLLLLDEIEKAHPDIFNILLQVF 755
SEYMERHTVSKLIGSPPGYVGY EGG LTEA+R+RP+T++L DEIEKAHPD+FN+LLQ+
Sbjct: 609 SEYMERHTVSKLIGSPPGYVGYNEGGQLTEAVRKRPYTVVLFDEIEKAHPDVFNLLLQIL 668
Query: 756 EDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDN-ESTSYAGMKTLVV 814
EDG LTDS GR + FKN L++MTSN+GS I K + G +GF LE+N E Y+ M+ LV
Sbjct: 669 EDGRLTDSKGRTIDFKNTLLIMTSNIGSKVIEK-KGGGLGFELEENIEELQYSRMRNLVN 727
Query: 815 EELKAYFRPELLNRIDEVVVFRSLEKAQV 843
EELK YFRPE LNR+DE++VFR L K +V
Sbjct: 728 EELKQYFRPEFLNRVDEIIVFRQLTKDEV 756
>sp|P35100|CLPC_PEA Chaperone protein ClpC, chloroplastic OS=Pisum sativum PE=2 SV=1
Length = 922
Score = 697 bits (1800), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 396/824 (48%), Positives = 529/824 (64%), Gaps = 60/824 (7%)
Query: 37 MSSFFNISMISHKVQFFHSNYTSNNNNCNPICARKRR--KIIPISSVFERFTERAVKAVI 94
MS F + +H ++ + +R+ R + IP ++FERFTE+A+K ++
Sbjct: 46 MSGFSGLRTFNHLNTMMRPGLDFHSKVSKAVSSRRARAKRFIP-RAMFERFTEKAIKVIM 104
Query: 95 FSQREAKSLGKDMVFTQHLLLGLIAEDRH-PNGFLES-GITIDKAREAVVSIWHSTNNQD 152
+Q EA+ LG + V T+ +LLGLI E L+S GI + AR V I
Sbjct: 105 LAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKII------- 157
Query: 153 TDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAG 212
+G F A ++PF+ KRV E + E +R G+N+I EH+ LGL +G A
Sbjct: 158 -----GRGSGFV-AVEIPFTPRAKRVLELSQEEARQLGHNYIGSEHLLLGLLREGEGVAA 211
Query: 213 RVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTAALKSPGRTRASA 272
RVL+ LG D ++ V R+ GE A +S++ + S +T
Sbjct: 212 RVLENLGADPTNIR-TQVIRMVGESA--------------DSVTATVGSGSSNNKT--PT 254
Query: 273 LEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLA 332
LE++ +LT A E +DPV+GR+ +I+R+ QIL RRTKNNP L+GE GVGKTAIAEGLA
Sbjct: 255 LEEYGTNLTKLAEEGKLDPVVGRQPQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLA 314
Query: 333 IRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVH 392
RI +VP + K++++LDMGLL+AG K RGE E R+ L+ EI++S D+ILFIDEVH
Sbjct: 315 QRIANGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDDIILFIDEVH 374
Query: 393 TLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPV 452
TLIG+G +D +N+LKP+L RGELQCI +TT DE+R EKD L RRFQPV
Sbjct: 375 TLIGAGAAE-----GAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPDLERRFQPV 429
Query: 453 LISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDE 512
+ EP+ ++ ++IL GLRE+YE HH ++T EA+ AA LS +YISDR+LPDKAIDLVDE
Sbjct: 430 KVPEPTVDETIQILKGLRERYEIHHKLRYTDEALIAAAQLSYQYISDRFLPDKAIDLVDE 489
Query: 513 AGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRT-VQAMHEVVQGS--------RLKYDD 563
AGSR + Q L + + +E+R V+ E V+ R K D
Sbjct: 490 AGSRVRL---------QHAQLPEEAKELDKEVRKIVKEKEEYVRNQDFEKAGELRDKEMD 540
Query: 564 VVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGL 623
+ A + E E S DE +V DI + S W+GIPV +++ADE L+ +
Sbjct: 541 LKAQISALIEKGKEMSKAETETADEGPIVTEVDIQHIVSSWTGIPVDKVSADESDRLLKM 600
Query: 624 EEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACY 683
E+ L KR+IGQDEAV AISRA++R+RVGLK+PNRP A+ +F GPTGVGK+ELAK+LAA Y
Sbjct: 601 EDTLHKRIIGQDEAVQAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYY 660
Query: 684 FGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRRRPFTLLLLDEIEKA 743
FGSE +M+RLDMSE+MERHTVSKLIGSPPGYVGY EGG LTEA+RRRP+T++L DEIEKA
Sbjct: 661 FGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKA 720
Query: 744 HPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLE-DNE 802
HPD+FN++LQ+ EDG LTDS GR V FKN L++MTSNVGS+ I KG IGF L+ D +
Sbjct: 721 HPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGR-RIGFDLDYDEK 779
Query: 803 STSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQL 846
+SY +K+LV EELK YFRPE LNR+DE++VFR L K +V ++
Sbjct: 780 DSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEI 823
>sp|Q1XDF4|CLPC_PORYE ATP-dependent Clp protease ATP-binding subunit clpA homolog
OS=Porphyra yezoensis GN=clpC PE=3 SV=1
Length = 821
Score = 692 bits (1787), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/774 (48%), Positives = 508/774 (65%), Gaps = 53/774 (6%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGL+ E +GI +
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLVGEG--------TGIAAQVLKSM 52
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
V++ + + + +G F A ++PF+ KRV E ++E +R G+N+I EH+
Sbjct: 53 NVNLKDA--RVEVEKIIGRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEHLL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
+GL +G A RVL+ L VDV+ + A + L GE A E ++SG
Sbjct: 110 MGLVREGEGVAARVLENLAVDVSSIRAEVIQML-GENA-------------EANVSGSNT 155
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
+ R++ LE+F +LT A E +DPV+GR+ EI+R+IQIL RRTKNNP+L+GE
Sbjct: 156 ---TQARSKTPTLEEFGSNLTQMAMEGGLDPVVGRQKEIERVIQILGRRTKNNPVLIGEP 212
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA RI +VP L K +++LD+GLL+AG K RGE E R+ ++ EI+
Sbjct: 213 GVGKTAIAEGLAQRIANRDVPSILEDKLVITLDVGLLVAGTKYRGEFEERLKRIMDEIKS 272
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+ +VIL IDEVHTLIG+G +D +NLLKP+L RGELQCI +TT +E+R E
Sbjct: 273 ADNVILVIDEVHTLIGAGAAE-----GAIDAANLLKPALARGELQCIGATTLEEYRKHIE 327
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQPV++ EPS E+ + IL GLR++YE HH + A+ AA + +YISDR
Sbjct: 328 KDPALERRFQPVVVGEPSVEETIEILFGLRDRYEKHHQLTMSDGALAAAAKYANQYISDR 387
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTV-QAMHEVVQGSRL 559
+LPDKAIDL+DEAGSR + L + +E+R V + E ++
Sbjct: 388 FLPDKAIDLIDEAGSRVRL---------LNSQLPPAARELDKELRAVLKTKDEAIRAQ-- 436
Query: 560 KYDDVVASMGDTSEIVVESSLPSASDDDEP------AVVGPDDIAAVASLWSGIPVQQIT 613
KY+ EI + + + S +EP VV DDIA + + W+GIPV ++T
Sbjct: 437 KYETAEQYRAREMEIKAQIAAIAQSKKNEPDLNLEDPVVTEDDIAEIVAAWTGIPVTKLT 496
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
E L+ +EE L R+IGQDEAV A+SRA++R+RVGLK+PNRP A+ +F GPTGVGKT
Sbjct: 497 KSESEKLMHMEETLHGRIIGQDEAVVAVSRAIRRARVGLKNPNRPIASFIFSGPTGVGKT 556
Query: 674 ELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRRRPFT 733
EL K+LA+ +FGSE+SM+RLDMSEYMERHTVSKLIGSPPGYVGY EGG LTEA+R++P+T
Sbjct: 557 ELTKALASYFFGSEASMIRLDMSEYMERHTVSKLIGSPPGYVGYSEGGYLTEAVRKKPYT 616
Query: 734 LLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKGRHGS 793
++L DEIEKAHPDIFN+LLQ+ EDG LTD+ GR + FKN L++MTSN+GS I KG GS
Sbjct: 617 VILFDEIEKAHPDIFNLLLQILEDGRLTDAKGRTIDFKNTLLIMTSNIGSKVIEKG-GGS 675
Query: 794 IGF-LLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQL 846
+GF L ED + Y +++LV EELK YFRPE LNR+DE++VFR L K +V ++
Sbjct: 676 LGFELSEDQTESQYTRVRSLVNEELKQYFRPEFLNRLDEIIVFRQLTKDEVREI 729
>sp|O78410|CLPC_GUITH ATP-dependent Clp protease ATP-binding subunit clpA homolog
OS=Guillardia theta GN=clpC PE=3 SV=1
Length = 819
Score = 691 bits (1782), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/776 (48%), Positives = 507/776 (65%), Gaps = 54/776 (6%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH-PNGFLES-GITIDKAR 138
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G+ + AR
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGVNLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F A ++PF+ KRV E ++E +R G+N+I EH
Sbjct: 61 VEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A RVL+ L +D+ + V RL G+ A+ ++ +G+
Sbjct: 108 LLLGLIREGEGVAARVLENLALDLTKVRT-QVIRLLGDTAEV------------SATNGQ 154
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
T K+P LE+F +LT +A+E +DPVIGR+ EI+R+IQIL RRTKNNPIL+G
Sbjct: 155 TKG-KTP------TLEEFGSNLTQKAAEGKLDPVIGRQKEIERVIQILGRRTKNNPILIG 207
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI +VP L KR+++LD+GLL+AG K RGE E R+ +I EI
Sbjct: 208 EPGVGKTAIAEGLAQRINNRDVPDILEDKRVVTLDIGLLVAGTKYRGEFEERLKKIIDEI 267
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ + +VIL IDEVHTLIG+G +D +N+LKP+L RGE+QCI +TT +E+R
Sbjct: 268 RVANNVILVIDEVHTLIGAGAAE-----GAIDAANILKPALARGEMQCIGATTLEEYRKH 322
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV++ EPS E+ + IL GLR++YE HH + EA++AA + +YI+
Sbjct: 323 IEKDSALERRFQPVMVGEPSVEETIEILYGLRDRYEKHHKLVISDEALSAAAKFADQYIA 382
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAGSR R Q ++ D +EI ++ E V+
Sbjct: 383 DRFLPDKAIDLIDEAGSRV------RLMNSQLPPAARELDKELREI--LKQKDEAVRSQD 434
Query: 559 L----KYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITA 614
+ D + + S + E +VV +DIA + + W+GIPV ++T
Sbjct: 435 FETAGQLRDREMEIKAQIAAIAHSKKGDEENTKEVSVVTEEDIAQIVAAWTGIPVNKMTR 494
Query: 615 DERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTE 674
E L+ +EE L R+IGQDEAV A+S+A++R+RVGLK+PNRP A+ +F GPTGVGKTE
Sbjct: 495 SESEKLLQMEETLHGRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFIFSGPTGVGKTE 554
Query: 675 LAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRRRPFTL 734
L K+LA+ +FGSE +M+RLDMSEYMERHTVSKLIGSPPGYVGY EGG LTE++RRRP+T+
Sbjct: 555 LTKALASYFFGSEEAMVRLDMSEYMERHTVSKLIGSPPGYVGYNEGGQLTESVRRRPYTV 614
Query: 735 LLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKGRHGSI 794
+L DEIEK HPD+FN+LLQ+ EDG LTDS GR V FKN L+++TSNVGS I KG G +
Sbjct: 615 VLFDEIEKGHPDVFNLLLQILEDGRLTDSKGRTVDFKNTLLILTSNVGSKVIEKG-GGGL 673
Query: 795 GF-LLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQLPLI 849
GF L ED + Y +K LV EELK YFRPE LNR+DE++VFR L K +V ++ I
Sbjct: 674 GFDLSEDQTESQYGRIKALVNEELKQYFRPEFLNRLDEIIVFRQLTKDEVGEIAEI 729
>sp|P51332|CLPC_PORPU ATP-dependent Clp protease ATP-binding subunit clpA homolog
OS=Porphyra purpurea GN=clpC PE=3 SV=1
Length = 821
Score = 690 bits (1781), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/774 (48%), Positives = 508/774 (65%), Gaps = 53/774 (6%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGL+ E +GI +
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLVGEG--------TGIAAQVLKSM 52
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
V++ + + + +G F A ++PF+ KRV E ++E +R G+N+I EH+
Sbjct: 53 NVNLKDA--RVEVEKIIGRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEHLL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
+GL +G A RVL+ L VDV+ + A + L GE A E ++SG A
Sbjct: 110 MGLVREGEGVAARVLENLAVDVSSIRAEVIQML-GENA-------------EANVSGSNA 155
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
+ R++ LE+F +LT A E +DPV+GR+ EI+R+IQIL RRTKNNP+L+GE
Sbjct: 156 ---TQARSKTPTLEEFGSNLTQMAIEGGLDPVVGRQKEIERVIQILGRRTKNNPVLIGEP 212
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA RI +VP L K +++LD+GLL+AG K RGE E R+ ++ EI+
Sbjct: 213 GVGKTAIAEGLAQRIANRDVPSILEDKLVITLDVGLLVAGTKYRGEFEERLKRIMDEIKS 272
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+ +VIL IDEVHTLIG+G +D +NLLKP+L RGELQCI +TT +E+R E
Sbjct: 273 ADNVILVIDEVHTLIGAGAAE-----GAIDAANLLKPALARGELQCIGATTLEEYRKHIE 327
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRF PV++ EPS E+ + IL GLR++YE HH + A+ AA + +YISDR
Sbjct: 328 KDPALERRFHPVVVGEPSVEETIEILFGLRDRYEKHHQLTMSDGALAAAAKYANQYISDR 387
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTV-QAMHEVVQGSRL 559
+LPDKAIDL+DEAGSR + L + +E+R V + E ++
Sbjct: 388 FLPDKAIDLIDEAGSRVRL---------LNSQLPPAARELDKELRAVLKTKDEAIRAQ-- 436
Query: 560 KYDDVVASMGDTSEIVVESSLPSASDDDEP------AVVGPDDIAAVASLWSGIPVQQIT 613
KY+ EI + + + S +EP VV DDIA + + W+GIPV ++T
Sbjct: 437 KYETAEQYRAREMEIKAQIAAIAQSKKNEPDLNLEDPVVTEDDIAEIVAAWTGIPVTKLT 496
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
E L+ +EE L R+IGQDEAV A+SRA++R+RVGLK+PNRP A+ +F GPTGVGKT
Sbjct: 497 KSESEKLMQMEETLHGRIIGQDEAVIAVSRAIRRARVGLKNPNRPIASFIFSGPTGVGKT 556
Query: 674 ELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRRRPFT 733
EL K+LA+ +FGSE+SM+RLDMSEYMERHTVSKLIGSPPGYVGY EGG LTEA+R++P+T
Sbjct: 557 ELTKALASYFFGSEASMIRLDMSEYMERHTVSKLIGSPPGYVGYSEGGYLTEAVRKKPYT 616
Query: 734 LLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKGRHGS 793
++L DEIEKAHPDIFN+LLQ+ EDG LTD+ GR + FKN L++MTSN+GS I KG GS
Sbjct: 617 VILFDEIEKAHPDIFNLLLQILEDGRLTDAKGRTIDFKNTLLIMTSNIGSKVIEKG-GGS 675
Query: 794 IGF-LLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQL 846
+GF L ED + Y +++LV EELK YFRPE LNR+DE++VFR L K +V ++
Sbjct: 676 LGFELSEDQTESQYTRVRSLVNEELKQYFRPEFLNRLDEIIVFRQLTKDEVREI 729
>sp|Q9FI56|CLPC1_ARATH Chaperone protein ClpC1, chloroplastic OS=Arabidopsis thaliana
GN=CLPC1 PE=1 SV=1
Length = 929
Score = 690 bits (1780), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/808 (48%), Positives = 528/808 (65%), Gaps = 63/808 (7%)
Query: 51 QFFHSNYTSNNNNCNPICARKRRKIIPISSVFERFTERAVKAVIFSQREAKSLGKDMVFT 110
Q FHS N +R + ++FERFTE+A+K ++ +Q EA+ LG + V T
Sbjct: 69 QDFHSKVRQAMNVPKGKASR-----FTVKAMFERFTEKAIKVIMLAQEEARRLGHNFVGT 123
Query: 111 QHLLLGLIAEDRH-PNGFLES-GITIDKAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAK 168
+ +LLGLI E L+S GI + AR V I +G F A +
Sbjct: 124 EQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKII------------GRGSGFV-AVE 170
Query: 169 MPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAV 228
+PF+ KRV E ++E +R G+N+I EH+ LGL +G A RVL+ LG D +++
Sbjct: 171 IPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIR-T 229
Query: 229 AVSRLQGELAKEGREPSLAKGVRENSISGKTAALKSPGRTRASALEQFCVDLTARASEEL 288
V R+ GE V N + G +++ K P LE++ +LT A E
Sbjct: 230 QVIRMVGE----------NNEVTAN-VGGGSSSNKMP------TLEEYGTNLTKLAEEGK 272
Query: 289 IDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKR 348
+DPV+GR+ +I+R++QIL RRTKNNP L+GE GVGKTAIAEGLA RI +VP + K+
Sbjct: 273 LDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPETIEGKK 332
Query: 349 IMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTG 408
+++LDMGLL+AG K RGE E R+ L+ EI++S ++ILFIDEVHTLIG+G
Sbjct: 333 VITLDMGLLVAGTKYRGEFEERLKKLMEEIRQSDEIILFIDEVHTLIGAGAAE-----GA 387
Query: 409 LDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLG 468
+D +N+LKP+L RGELQCI +TT DE+R EKD AL RRFQPV + EP+ ++ ++IL G
Sbjct: 388 IDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPTVDETIQILKG 447
Query: 469 LREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQ 528
LRE+YE HH ++T E++ AA LS +YISDR+LPDKAIDL+DEAGSR + + +E
Sbjct: 448 LRERYEIHHKLRYTDESLVAAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQVPEEA 507
Query: 529 QTCILSKPPDDYWQEIRTV-QAMHEVVQGSRLKY-----DDVVASMGDTSEIVV---ESS 579
+ + +E+R + + +E V+G + D + + S I E S
Sbjct: 508 R---------ELEKELRQITKEKNEAVRGQDFEKAGTLRDREIELRAEVSAIQAKGKEMS 558
Query: 580 LPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVA 639
+ +E +V DI + S W+GIPV++++ DE L+ +EE L KR+IGQDEAV
Sbjct: 559 KAESETGEEGPMVTESDIQHIVSSWTGIPVEKVSTDESDRLLKMEETLHKRIIGQDEAVK 618
Query: 640 AISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYM 699
AISRA++R+RVGLK+PNRP A+ +F GPTGVGK+ELAK+LAA YFGSE +M+RLDMSE+M
Sbjct: 619 AISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFM 678
Query: 700 ERHTVSKLIGSPPGYVGYEEGGLLTEAIRRRPFTLLLLDEIEKAHPDIFNILLQVFEDGH 759
ERHTVSKLIGSPPGYVGY EGG LTEA+RRRP+T++L DEIEKAHPD+FN++LQ+ EDG
Sbjct: 679 ERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGR 738
Query: 760 LTDSHGRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLE-DNESTSYAGMKTLVVEELK 818
LTDS GR V FKN L++MTSNVGS+ I KG IGF L+ D + +SY +K+LV EELK
Sbjct: 739 LTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGR-RIGFDLDYDEKDSSYNRIKSLVTEELK 797
Query: 819 AYFRPELLNRIDEVVVFRSLEKAQVCQL 846
YFRPE LNR+DE++VFR L K +V ++
Sbjct: 798 QYFRPEFLNRLDEMIVFRQLTKLEVKEI 825
>sp|P31541|CLPAA_SOLLC ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4A,
chloroplastic OS=Solanum lycopersicum GN=CD4A PE=3 SV=1
Length = 926
Score = 689 bits (1778), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/786 (49%), Positives = 519/786 (66%), Gaps = 59/786 (7%)
Query: 74 KIIPISSVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH-PNGFLES-G 131
+ +P ++FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G
Sbjct: 87 RFVP-KAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMG 145
Query: 132 ITIDKAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGY 191
I + AR V I +G F A ++PF+ KRV E ++E +R G+
Sbjct: 146 INLKDARVEVEKII------------GRGSGFI-AVEIPFTPRAKRVLELSLEEARQLGH 192
Query: 192 NFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVR 251
N+I EH+ LGL +G A RVL+ LG D ++ V R+ GE S A G
Sbjct: 193 NYIGSEHLLLGLLREGEGVAARVLENLGADPTNIR-TQVIRMVGE-------SSEAVGA- 243
Query: 252 ENSISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTK 311
S+ G T+ LK P LE++ +LT A E +DPV+GR+ +I+R+ QIL RRTK
Sbjct: 244 --SVGGGTSGLKMP------TLEEYGTNLTKLAEEGKLDPVVGRQAQIERVTQILGRRTK 295
Query: 312 NNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARV 371
NNP L+GE GVGKTAIAEGLA RI +VP + K++++LDMGLL+AG K RGE E R+
Sbjct: 296 NNPCLIGEPGVGKTAIAEGLAQRIANGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERL 355
Query: 372 TTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTT 431
L+ EI++S ++ILFIDEVHTLIG+G +D +N+LKP+L RGELQCI +TT
Sbjct: 356 KKLMEEIKQSDEIILFIDEVHTLIGAGAAE-----GAIDAANILKPALARGELQCIGATT 410
Query: 432 QDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVH 491
DE+R EKD AL RRFQPV + EPS ++ ++IL GLRE+YE HH +T EAI AA
Sbjct: 411 LDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLHYTDEAIEAAAK 470
Query: 492 LSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTV-QAM 550
LS +YISDR+LPDKAIDL+DEAGSR + + L + + +E+R + +
Sbjct: 471 LSHQYISDRFLPDKAIDLIDEAGSRVRL---------RHAQLPEEARELEKELRQITKEK 521
Query: 551 HEVVQGSRLKY-----DDVVASMGDTSEIVVESSLPSASDDDEPAVVGP----DDIAAVA 601
+E V+G + D + S ++ ++ S ++ + GP DI +
Sbjct: 522 NEAVRGQDFEKAGELRDREMDLKAQISALIDKNKEKSKAESEAGDAAGPIVTEADIQHIV 581
Query: 602 SLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAA 661
S W+GIPV++++ DE L+ +EE L RVIGQDEAV AISRA++R+RVGLK+PNRP A+
Sbjct: 582 SSWTGIPVEKVSTDESDRLLKMEETLHTRVIGQDEAVKAISRAIRRARVGLKNPNRPIAS 641
Query: 662 MLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGG 721
+F GPTGVGK+ELAKSLA YFGSE +M+RLDMSE+MERHTVSKLIGSPPGYVGY EGG
Sbjct: 642 FIFSGPTGVGKSELAKSLATYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGG 701
Query: 722 LLTEAIRRRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNV 781
LTEA+RRRP+T++L DEIEKAHPD+FN++LQ+ EDG LTDS GR V FKN L++MTSNV
Sbjct: 702 QLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNV 761
Query: 782 GSTTIAKGRHGSIGFLLE-DNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEK 840
GS+ I KG IGF L+ D + +SY +K+LV EELK YFRPE LNR+ E++VFR L K
Sbjct: 762 GSSVIEKGGR-RIGFDLDFDEKDSSYNRIKSLVTEELKQYFRPEFLNRLSEMIVFRQLTK 820
Query: 841 AQVCQL 846
+V ++
Sbjct: 821 LEVKEI 826
>sp|Q9SXJ7|CLPC2_ARATH Chaperone protein ClpC2, chloroplastic OS=Arabidopsis thaliana
GN=CLPC2 PE=2 SV=1
Length = 952
Score = 682 bits (1760), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/777 (48%), Positives = 521/777 (67%), Gaps = 53/777 (6%)
Query: 80 SVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKARE 139
++FERFTE+A+K ++ SQ EA+ LG + V T+ +LLGLI E +GI +
Sbjct: 113 AMFERFTEKAIKVIMLSQEEARRLGHNFVGTEQILLGLIGEG--------TGIAAKVLKS 164
Query: 140 AVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHI 199
+++ S + + +G F A ++PF+ KRV E ++E +R G+N+I EH+
Sbjct: 165 MGINLKDS--RVEVEKIIGRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHL 221
Query: 200 ALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKT 259
LGL +G A RVL+ LG D +++ V R+ GE N ++
Sbjct: 222 LLGLLREGEGVAARVLENLGADPSNIR-TQVIRMVGE---------------NNEVTASV 265
Query: 260 AALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGE 319
S ++ LE++ +LT A E +DPV+GR+ +I+R++QIL RRTKNNP L+GE
Sbjct: 266 GGGSSG-NSKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILARRTKNNPCLIGE 324
Query: 320 SGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ 379
GVGKTAIAEGLA RI +VP + K +++LDMGLL+AG K RGE E R+ L+ EI+
Sbjct: 325 PGVGKTAIAEGLAQRIASGDVPETIEGKTVITLDMGLLVAGTKYRGEFEERLKKLMEEIR 384
Query: 380 KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQF 439
+S ++ILFIDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 385 QSDEIILFIDEVHTLIGAGAAE-----GAIDAANILKPALARGELQCIGATTIDEYRKHI 439
Query: 440 EKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISD 499
EKD AL RRFQPV + EP+ E+A++IL GLRE+YE HH ++T EA+ AA LS +YISD
Sbjct: 440 EKDPALERRFQPVKVPEPTVEEAIQILQGLRERYEIHHKLRYTDEALVAAAQLSHQYISD 499
Query: 500 RYLPDKAIDLVDEAGSRA---HIELFK--RKKEQQTCILSKPPDDYWQEIRTVQAMHEVV 554
R+LPDKAIDL+DEAGSR H +L + R+ E+Q ++K ++ +R+ E+
Sbjct: 500 RFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKQLRQITKEKNEA---VRSQD--FEMA 554
Query: 555 QGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGP----DDIAAVASLWSGIPVQ 610
R + ++ A + + V+ A ++E GP DI + + W+GIPV+
Sbjct: 555 GSHRDREIELKAEIAN----VLSRGKEVAKAENEAEEGGPTVTESDIQHIVATWTGIPVE 610
Query: 611 QITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGV 670
++++DE L+ +E+ L RVIGQDEAV AISRA++R+RVGLK+PNRP A+ +F GPTGV
Sbjct: 611 KVSSDESSRLLQMEQTLHTRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGV 670
Query: 671 GKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRRR 730
GK+ELAK+LAA YFGSE +M+RLDMSE+MERHTVSKLIGSPPGYVGY EGG LTEA+RRR
Sbjct: 671 GKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRR 730
Query: 731 PFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKGR 790
P+TL+L DEIEKAHPD+FN++LQ+ EDG LTDS GR V FKN L++MTSNVGS+ I KG
Sbjct: 731 PYTLVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGG 790
Query: 791 HGSIGFLLE-DNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQL 846
IGF L+ D + +SY +K+LV EELK YFRPE LNR+DE++VFR L K +V ++
Sbjct: 791 R-RIGFDLDHDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEI 846
>sp|Q7F9I1|CLPC1_ORYSJ Chaperone protein ClpC1, chloroplastic OS=Oryza sativa subsp.
japonica GN=CLPC1 PE=2 SV=2
Length = 918
Score = 682 bits (1760), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/781 (48%), Positives = 512/781 (65%), Gaps = 57/781 (7%)
Query: 78 ISSVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH-PNGFLES-GITID 135
+ ++FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S GI +
Sbjct: 84 VRAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLK 143
Query: 136 KAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIA 195
AR V I +G F A ++PF+ KRV E ++E +R G+N+I
Sbjct: 144 DARVEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIG 190
Query: 196 PEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSI 255
EH+ LGL +G A RVL+ LG D N++ V R+ GE ++
Sbjct: 191 SEHLLLGLLREGEGVAARVLESLGADPNNIRT-QVIRMVGE----------------STE 233
Query: 256 SGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPI 315
+ + LE++ +LT A E +DPV+GR+ +I+R+ QIL RRTKNNP
Sbjct: 234 AVGAGVGGGSSGQKMPTLEEYGTNLTKLAEEGKLDPVVGRQDQIERVTQILGRRTKNNPC 293
Query: 316 LLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLI 375
L+GE GVGKTAIAEGLA RI +VP + K++++LDMGLL+AG K RGE E R+ L+
Sbjct: 294 LIGEPGVGKTAIAEGLAQRISNGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLM 353
Query: 376 SEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEH 435
EI+++ D+ILFIDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+
Sbjct: 354 EEIKQNDDIILFIDEVHTLIGAGAAE-----GAIDAANILKPALARGELQCIGATTLDEY 408
Query: 436 RTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495
R EKD AL RRFQPV + EP+ ++ ++IL GLRE+YE HH ++T +++ AA LS +
Sbjct: 409 RKHIEKDPALERRFQPVKVPEPTVDETIQILRGLRERYELHHKLRYTDDSLIAAAQLSYQ 468
Query: 496 YISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTV-QAMHEVV 554
YISDR+LPDKAIDL+DEAGSR + + L + +E+R V + +E V
Sbjct: 469 YISDRFLPDKAIDLIDEAGSRVRL---------RHAQLPDEAKELDKELRQVTKDKNEAV 519
Query: 555 QGSRLK----YDDVVASMGDTSEIVVESSLPSASDDDEPAVVGP----DDIAAVASLWSG 606
+G + D + +++ S + E VGP DI + S W+G
Sbjct: 520 RGQDFEKAGELRDREMELKAQITAIIDKSKEMVKAETESGEVGPLVTEADIQHIVSSWTG 579
Query: 607 IPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCG 666
IPV+++++DE L+ +EE L R+IGQDEAV AISRA++R+RVGLK+PNRP A+ +F G
Sbjct: 580 IPVEKVSSDESDRLLKMEETLHTRIIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSG 639
Query: 667 PTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEA 726
PTGVGK+ELAK+LAA YFGSE +M+RLDMSE+MERHTVSKLIGSPPGYVGY EGG LTEA
Sbjct: 640 PTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEA 699
Query: 727 IRRRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTI 786
+RRRP+T++L DEIEKAHPD+FN++LQ+ EDG LTDS GR V FKN L++MTSNVGS+ I
Sbjct: 700 VRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVI 759
Query: 787 AKGRHGSIGFLLE-DNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQ 845
KG IGF L+ D + TSY +K+LV EELK YFRPE LNR+DE++VFR L K +V +
Sbjct: 760 EKGGR-KIGFDLDYDEKDTSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKE 818
Query: 846 L 846
+
Sbjct: 819 I 819
>sp|P31542|CLPAB_SOLLC ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B,
chloroplastic OS=Solanum lycopersicum GN=CD4B PE=3 SV=1
Length = 923
Score = 681 bits (1758), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/784 (49%), Positives = 519/784 (66%), Gaps = 56/784 (7%)
Query: 74 KIIPISSVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH-PNGFLES-G 131
+ +P ++FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G
Sbjct: 85 RFVP-KAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMG 143
Query: 132 ITIDKAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGY 191
I + AR V I +G F A ++PF+ KRV E ++E +R G+
Sbjct: 144 INLKDARVEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGH 190
Query: 192 NFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVR 251
N+I EH+ LGL +G A RVL+ LG D +++ V R+ GE + A G
Sbjct: 191 NYIGSEHLLLGLLREGEGVAARVLENLGADPSNIR-TQVIRMVGE-------SNEAVGA- 241
Query: 252 ENSISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTK 311
S+ G T+ K P LE++ +LT A E +DPV+GR+ +I+R+ QIL RRTK
Sbjct: 242 --SVGGGTSGQKMP------TLEEYGTNLTKLAEEGKLDPVVGRQPQIERVTQILGRRTK 293
Query: 312 NNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARV 371
NNP L+GE GVGKTAIAEGLA RI +VP + K++++LDMGLL+AG K RGE E R+
Sbjct: 294 NNPCLIGEPGVGKTAIAEGLAQRIANGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERL 353
Query: 372 TTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTT 431
L+ EI++S ++ILFIDEVHTLIG+G +D +N+LKP+L RGELQCI +TT
Sbjct: 354 KKLMEEIKQSDEIILFIDEVHTLIGAGAAE-----GAIDAANILKPALARGELQCIGATT 408
Query: 432 QDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVH 491
DE+R EKD AL RRFQPV + EP+ ++ ++IL GLRE+YE HH ++T E + AA
Sbjct: 409 LDEYRKHIEKDPALERRFQPVKVPEPTVDETIQILKGLRERYEIHHKLRYTDEDLVAAAQ 468
Query: 492 LSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMH 551
LS +YISDR+LPDKAIDL+DEAGSR R + Q +K + ++I + +
Sbjct: 469 LSYQYISDRFLPDKAIDLIDEAGSRV------RLRHAQLPEEAKELEKELRQI--TKEKN 520
Query: 552 EVVQGS--------RLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASL 603
E V+G R + D+ A + + E S + D +V DI + S
Sbjct: 521 EAVRGQDFEKAGELRDREMDLKAQITALIDKNKEVSKAESEAADTGPLVTEADIQHIVSS 580
Query: 604 WSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAML 663
W+GIPV++++ DE L+ +EE L R+IGQDEAV AISRA++R+RVGLK+PNRP A+ +
Sbjct: 581 WTGIPVEKVSTDESDRLLKMEETLHTRIIGQDEAVKAISRAIRRARVGLKNPNRPIASFI 640
Query: 664 FCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLL 723
F GPTGVGK+ELAK+LAA YFGSE +M+RLDMSE+MERHTVSKLIGSPPGYVGY EGG L
Sbjct: 641 FSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQL 700
Query: 724 TEAIRRRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGS 783
TEA+RRRP+T++L DEIEKAHPD+FN++LQ+ EDG LTDS GR V FKN L++MTSNVGS
Sbjct: 701 TEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGS 760
Query: 784 TTIAKGRHGSIGFLLE-DNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQ 842
+ I KG IGF L+ D + +SY +K+LV EELK YFRPE LNR+DE++VFR L K +
Sbjct: 761 SVIEKGGR-RIGFDLDLDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLE 819
Query: 843 VCQL 846
V ++
Sbjct: 820 VKEI 823
>sp|Q2QVG9|CLPC2_ORYSJ Chaperone protein ClpC2, chloroplastic OS=Oryza sativa subsp.
japonica GN=CLPC2 PE=2 SV=2
Length = 919
Score = 676 bits (1745), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/777 (48%), Positives = 516/777 (66%), Gaps = 47/777 (6%)
Query: 80 SVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH-PNGFLES-GITIDKA 137
S+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S GI + A
Sbjct: 87 SMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDA 146
Query: 138 REAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPE 197
R V I +G F A ++PF+ KRV E ++E +R G+N+I E
Sbjct: 147 RVEVEKII------------GRGNGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGSE 193
Query: 198 HIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISG 257
H+ LGL +G A RVL+ LG D +++ V R+ GE + +
Sbjct: 194 HLLLGLLREGEGVAARVLESLGADPSNIRT-QVIRMIGETTE----------------AV 236
Query: 258 KTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
+ LE++ +LT A E +DPV+GR+ +I+R++QIL RRTKNNP L+
Sbjct: 237 GAGVGGGSSGNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLI 296
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
GE GVGKTAIAEGLA RI +VP + K++++LDMGLL+AG K RGE E R+ L+ E
Sbjct: 297 GEPGVGKTAIAEGLAQRISTGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEE 356
Query: 378 IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
I++S ++ILFIDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 357 IKQSDEIILFIDEVHTLIGAGAAE-----GAIDAANILKPALARGELQCIGATTLDEYRK 411
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
EKD AL RRFQPV + EP+ ++ + IL GLRE+YE HH ++T +A+ +A LS +YI
Sbjct: 412 HIEKDPALERRFQPVRVPEPTVDETIEILRGLRERYEIHHKLRYTDDALISAAKLSYQYI 471
Query: 498 SDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCI--LSKPPDDYWQEIRTVQAMHEV-- 553
SDR+LPDKAIDL+DEAGSR + + +E + L + D + +R+ Q +
Sbjct: 472 SDRFLPDKAIDLIDEAGSRVRLRHAQVPEEARELDKELKQITKDKNEAVRS-QDFEKAGE 530
Query: 554 VQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
++ ++ + ++ D S+ E S + +V DI + S W+GIPV++++
Sbjct: 531 LRDREMELKAQITALIDKSK---EMSKAETESGETGPLVNEADIQHIVSSWTGIPVEKVS 587
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
+DE L+ +EE L +RVIGQDEAV AISR+++R+RVGLK+PNRP A+ +F GPTGVGK+
Sbjct: 588 SDESDKLLKMEETLHQRVIGQDEAVKAISRSIRRARVGLKNPNRPIASFIFAGPTGVGKS 647
Query: 674 ELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRRRPFT 733
ELAK+LAA YFGSE +M+RLDMSE+MERHTVSKLIGSPPGYVGY EGG LTEA+RRRP+T
Sbjct: 648 ELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYT 707
Query: 734 LLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKGRHGS 793
++L DEIEKAHPD+FN++LQ+ EDG LTDS GR V FKN L++MTSNVGS+ I KG
Sbjct: 708 VVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGR-K 766
Query: 794 IGFLLE-DNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQLPLI 849
IGF L+ D + +SY+ +K+LVVEE+K YFRPE LNR+DE++VFR L K +V ++ I
Sbjct: 767 IGFDLDYDEKDSSYSRIKSLVVEEMKQYFRPEFLNRLDEMIVFRQLTKLEVKEIAEI 823
>sp|P46523|CLPA_BRANA ATP-dependent Clp protease ATP-binding subunit clpA homolog,
chloroplastic (Fragment) OS=Brassica napus GN=CLPA PE=2
SV=1
Length = 874
Score = 671 bits (1731), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/779 (48%), Positives = 507/779 (65%), Gaps = 56/779 (7%)
Query: 78 ISSVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH-PNGFLES-GITID 135
+ ++FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S GI +
Sbjct: 38 VKAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLK 97
Query: 136 KAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIA 195
AR V I +G F A ++PF+ KRV E ++E +R G+N+I
Sbjct: 98 DARVEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIG 144
Query: 196 PEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSI 255
EH+ LGL +G A RVL+ LG D +++ V R+ GE N +
Sbjct: 145 SEHLLLGLLREGEGVAARVLENLGADPSNIRT-QVIRMVGE---------------NNEV 188
Query: 256 SGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPI 315
+ G + LE++ +LT A E +DPV+GR +I+R++QIL RRTKNNP
Sbjct: 189 TANVGG--GSGTNKMPTLEEYGTNLTKLAEEGKLDPVVGRHPQIERVVQILGRRTKNNPC 246
Query: 316 LLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLI 375
L+GE GVGKTAIAEGLA RI V K++++LDMGLL AG K RGE E RV L+
Sbjct: 247 LIGEPGVGKTAIAEGLAQRIASGVVRETSEGKKVITLDMGLLAAGTKYRGEFEERVKKLM 306
Query: 376 SEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEH 435
EI++S ++ILFIDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+
Sbjct: 307 EEIKQSDEIILFIDEVHTLIGAGAAE-----GAIDAANILKPALARGELQCIGATTLDEY 361
Query: 436 RTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495
R EKD AL RRFQPV + EP+ ++ ++IL GLRE+YE HH ++T E++ AA LS +
Sbjct: 362 RKHIEKDPALERRFQPVKVPEPTVDETIQILKGLRERYEIHHKLRYTDESLVAAAQLSYQ 421
Query: 496 YISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQ 555
YISDR+LPD+AIDL+DEAGSR + + +E + + +E+R + +E V+
Sbjct: 422 YISDRFLPDRAIDLMDEAGSRVRLRHAQVPEEAR---------ELEKELRQITKENEAVR 472
Query: 556 GSRLKY-----DDVVASMGDTSEIVV---ESSLPSASDDDEPAVVGPDDIAAVASLWSGI 607
G + D + + S I E S + DE +V DI + S W+GI
Sbjct: 473 GQDFEKAGTLRDREIELRAEVSAIQAKGKEMSKAESETGDEGPMVTESDIQHIVSSWTGI 532
Query: 608 PVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGP 667
V++++ DE LL+ +EE L KRVIGQDEAV AISRA++R+RVGLK+PNRP A+ +F GP
Sbjct: 533 LVEKVSTDESDLLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFFGP 592
Query: 668 TGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAI 727
TGVGK+ELAK+LAA YFG E +M+RLDMSE+MERHTVSKLIGSPPGYVGY E LTEA+
Sbjct: 593 TGVGKSELAKALAAYYFGCEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEPPQLTEAV 652
Query: 728 RRRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIA 787
RRRP+T++L DEIEKAHPD+FN++LQ+ EDG LT+S GR V FKN L++MTSNVGS+ I
Sbjct: 653 RRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTNSKGRTVDFKNTLLIMTSNVGSSVIE 712
Query: 788 KGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQL 846
KG IGF L+ + +SY +K+LV +ELK YFRPE LNR+DE+++FR L K +V ++
Sbjct: 713 KGGR-RIGFDLDYEKDSSYNRIKSLVTQELKQYFRPEFLNRLDEMILFRQLTKLEVKEI 770
>sp|Q8EU05|CLPB_OCEIH Chaperone protein ClpB OS=Oceanobacillus iheyensis (strain DSM
14371 / JCM 11309 / KCTC 3954 / HTE831) GN=clpB PE=3
SV=1
Length = 809
Score = 663 bits (1711), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/767 (46%), Positives = 487/767 (63%), Gaps = 56/767 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDR--HPNGFLESGITIDKAR 138
+F RFTERA K + SQ EA LG + + T+H+LLGL+ E G+ + K +
Sbjct: 2 MFGRFTERAQKVLALSQEEAVRLGHNNIGTEHILLGLVREGEGIAAKALQSLGLEVSKIQ 61
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
E V + +P S P K+V E + + +R G++++ EH
Sbjct: 62 EEVEKLI-----------GVGKQPTQSIHYTP---RAKKVVELSQDEARKLGHSYVGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A RVL LGV +N + L ++ GR+ SG+
Sbjct: 108 ILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNESQAGRQGR----------SGQ 157
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ +P L+ DLT A E IDPVIGR EI+R+IQ+L RRTKNNP+L+G
Sbjct: 158 QSNASTP------TLDSLARDLTVSAKEGKIDPVIGRSKEIERVIQVLSRRTKNNPVLIG 211
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+AEGLA +I+ EVP L KR+M+LDMG ++AG K RGE E R+ ++ EI
Sbjct: 212 EPGVGKTAVAEGLAQQIIDNEVPETLRDKRVMTLDMGTVVAGTKYRGEFEDRLKKVMEEI 271
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G++ILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE+R
Sbjct: 272 RQAGNIILFIDELHTLIGAG----GAEG-AIDASNILKPSLARGELQCIGATTLDEYRKY 326
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + EP+ E+ ++IL GLR++YEAHH T EAI AA LS RYI+
Sbjct: 327 IEKDAALERRFQPIQVDEPTLEETIQILNGLRDRYEAHHRVTITDEAIEAAASLSDRYIT 386
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAGS+ + + + PP+ E + + E +
Sbjct: 387 DRFLPDKAIDLIDEAGSKVRLRSY-----------TVPPNLKELEQKLDEVRKEKDAAVQ 435
Query: 559 LKYDDVVASMGDTSEIVVESSLPSASDDDEP-----AVVGPDDIAAVASLWSGIPVQQIT 613
+ + AS+ D+ + E + + E + V +DIAAV S W+G+PV ++T
Sbjct: 436 SQEFEKAASLRDSEQRFREELETTKNQWKEKQGQTDSEVTMEDIAAVVSTWTGVPVSKLT 495
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
DE L+ +E+ L RVIGQ EAV A+++A++R+R GLKDP RP + +F GPTGVGKT
Sbjct: 496 KDETDRLLNMEKILHDRVIGQSEAVNAVAKAIRRARAGLKDPKRPIGSFIFLGPTGVGKT 555
Query: 674 ELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRRRPFT 733
ELA++LA F E +M+R+DMSEYMERH S+L+GSPPGYVGY+EGG LTE +RR+P++
Sbjct: 556 ELARALAEVMFADEDAMIRIDMSEYMERHATSRLVGSPPGYVGYDEGGQLTEKVRRKPYS 615
Query: 734 LLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKGRHGS 793
++LLDE+EKAHP++FNILLQV EDG LTDS GR V F+N +I+MTSNVG++ + + ++
Sbjct: 616 VVLLDEVEKAHPEVFNILLQVLEDGRLTDSKGRVVDFRNTVIIMTSNVGASELKRNKY-- 673
Query: 794 IGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEK 840
+GF L DNE Y MK+ V+EELK FRPE LNRIDE +VF SLEK
Sbjct: 674 VGFAL-DNEEKDYKDMKSKVIEELKKAFRPEFLNRIDETIVFHSLEK 719
>sp|P37571|CLPC_BACSU Negative regulator of genetic competence ClpC/MecB OS=Bacillus
subtilis (strain 168) GN=clpC PE=1 SV=1
Length = 810
Score = 646 bits (1666), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/771 (46%), Positives = 500/771 (64%), Gaps = 55/771 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+F RFTERA K + +Q EA LG + + T+H+LLGL+ E GI KA +A
Sbjct: 2 MFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREG--------EGIAA-KALQA 52
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
+ + ++ + +G+ S + ++ K+V E +++ +R G++++ EHI
Sbjct: 53 L-GLGSEKIQKEVESLIGRGQEMSQT--IHYTPRAKKVIELSMDEARKLGHSYVGTEHIL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL +G A RVL LGV +N A V +L G N A
Sbjct: 110 LGLIREGEGVAARVLNNLGVSLNK-ARQQVLQLLGS----------------NETGSSAA 152
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
S T L+ DLTA A E+ +DPVIGR EIQR+I++L RRTKNNP+L+GE
Sbjct: 153 GTNSNANT--PTLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEP 210
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA +I+ EVP L KR+M+LDMG ++AG K RGE E R+ ++ EI++
Sbjct: 211 GVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQ 270
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+G++ILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE+R E
Sbjct: 271 AGNIILFIDELHTLIGAG----GAEG-AIDASNILKPSLARGELQCIGATTLDEYRKYIE 325
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQP+ + +PS +++++IL GLR++YEAHH T +AI AAV LS RYISDR
Sbjct: 326 KDAALERRFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDR 385
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLK 560
+LPDKAIDL+DEAGS+ + F + PP+ E + + E + +
Sbjct: 386 FLPDKAIDLIDEAGSKVRLRSF-----------TTPPNLKELEQKLDEVRKEKDAAVQSQ 434
Query: 561 YDDVVASMGDTSEIV---VESSLPSASDDD--EPAVVGPDDIAAVASLWSGIPVQQITAD 615
+ AS+ DT + + VE + S + E + V DDIA V S W+G+PV +I
Sbjct: 435 EFEKAASLRDTEQRLREQVEDTKKSWKEKQGQENSEVTVDDIAMVVSSWTGVPVSKIAQT 494
Query: 616 ERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTEL 675
E L+ +E L RVIGQDEAV A+++AV+R+R GLKDP RP + +F GPTGVGKTEL
Sbjct: 495 ETDKLLNMENILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTEL 554
Query: 676 AKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRRRPFTLL 735
A++LA FG E SM+R+DMSEYME+H+ S+L+GSPPGYVGY+EGG LTE +RR+P++++
Sbjct: 555 ARALAESIFGDEESMIRIDMSEYMEKHSTSRLVGSPPGYVGYDEGGQLTEKVRRKPYSVV 614
Query: 736 LLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKGRHGSIG 795
LLDEIEKAHPD+FNILLQV EDG LTDS GR V F+N +++MTSNVG++ + + ++ +G
Sbjct: 615 LLDEIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASELKRNKY--VG 672
Query: 796 FLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQL 846
F ++D E+ ++ MK V+ ELK FRPE +NRIDE++VF SLEK + ++
Sbjct: 673 FNVQD-ETQNHKDMKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEI 722
>sp|Q53LY0|CLPC3_ORYSJ Chaperone protein ClpC3, chloroplastic OS=Oryza sativa subsp.
japonica GN=CLPC3 PE=2 SV=1
Length = 932
Score = 632 bits (1631), Expect = e-180, Method: Compositional matrix adjust.
Identities = 346/773 (44%), Positives = 500/773 (64%), Gaps = 47/773 (6%)
Query: 82 FERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAV 141
F+ FT++A+KA++ +Q EA+ LG ++ LLLG+I E +GI R A
Sbjct: 99 FDMFTDKAIKAIMMAQEEARRLGHHAAGSEQLLLGVIGEG--------TGIGAKVLRGAG 150
Query: 142 VSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIAL 201
+S+ + + + A +G P ++ F+ + K V +A+ E + G+N++ EH+ L
Sbjct: 151 LSLKAA--RAEVEKMAGRG-PGMVPMEIKFTPAAKNVLQASQEEAHQLGHNYVGSEHLLL 207
Query: 202 GLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTAA 261
GL + G+A VLK D +++ + + + E +P A ++ G ++
Sbjct: 208 GLLR-EHGAALVVLKNFQADPSNIRSEVIRMISD--TSEDHQPVSA------AVGGGSST 258
Query: 262 LKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESG 321
K P L ++ +LT A E +DPV+GR+ ++ R++QIL RRTKNNP L+GE G
Sbjct: 259 TKIP------TLLEYGTNLTKLAEEGKLDPVVGRQNQVDRVVQILGRRTKNNPCLIGEPG 312
Query: 322 VGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKS 381
VGKTAIAEGLA RI VP + K +++LDMGLL+AG K RGE E R+ L+ E++++
Sbjct: 313 VGKTAIAEGLAQRIAAGNVPETIDGKTVITLDMGLLVAGTKYRGEFEERLKKLMDEVKQN 372
Query: 382 GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEK 441
G++ILF+DEVHTL+G+G +G +D +N+LKP+L RGELQCI +TT DE+R EK
Sbjct: 373 GEIILFLDEVHTLVGAGAA----EGA-IDAANILKPALARGELQCIGATTIDEYRKHIEK 427
Query: 442 DKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRY 501
D AL RRFQPV + EP+ ++ + IL GLRE+YE HH ++T E++ AA LS +YISDR+
Sbjct: 428 DPALERRFQPVKVPEPTVDETIGILKGLRERYEIHHKVQYTDESLIAAARLSYQYISDRF 487
Query: 502 LPDKAIDLVDEAGSRAHI-------ELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVV 554
LPDKAIDLVDEAGS + E + +K+ + + K Q+ A+
Sbjct: 488 LPDKAIDLVDEAGSLVRLRNAQLPDEAKELEKKLKKIMAEKSEAIRSQDFEKAGAL---- 543
Query: 555 QGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPA-VVGPDDIAAVASLWSGIPVQQIT 613
+G ++ + S+ D S+ E S + + P V D+ + S W+G+PV+++T
Sbjct: 544 RGEEVELKSEIMSLVDKSK---EMSKAAVDSGESPGPTVTEADVQHIVSSWTGVPVEKVT 600
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
DE L+ +E L +R++GQDEAV AISRA++R+RVGL+DP RP A+ +F GPTGVGK+
Sbjct: 601 VDESSRLLAMESSLHRRIVGQDEAVTAISRAIRRARVGLRDPRRPIASFIFAGPTGVGKS 660
Query: 674 ELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRRRPFT 733
ELAK+LAA Y+GS +M+RLDMSE+ME+HTV+KL+GSPPGYVGY EGG LTEAIRRRP+
Sbjct: 661 ELAKALAAYYYGSPEAMVRLDMSEFMEKHTVAKLVGSPPGYVGYAEGGQLTEAIRRRPYA 720
Query: 734 LLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKGRHGS 793
++L DE+EKAHPD+FN++LQ+ +DG LTDS GR V FKN+LI+MTSNVGS I KG
Sbjct: 721 VVLFDEVEKAHPDVFNMMLQILDDGRLTDSKGRTVDFKNSLIIMTSNVGSGVIEKGGR-Q 779
Query: 794 IGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQL 846
+GF + + Y +K +V EE+K YFRPE LNR+DE++VFR L K +V ++
Sbjct: 780 LGFAGDGSGDGGYGVIKNMVEEEMKRYFRPEFLNRLDEMIVFRQLTKLEVKEI 832
>sp|Q2YSD6|CLPC_STAAB ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain bovine RF122 / ET3-1)
GN=clpC PE=3 SV=1
Length = 818
Score = 623 bits (1606), Expect = e-177, Method: Compositional matrix adjust.
Identities = 345/786 (43%), Positives = 481/786 (61%), Gaps = 85/786 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGF----LES-GITID 135
+F R TERA + + +Q EA L + T+HLLLGL+ E P G LES IT D
Sbjct: 2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKE---PEGIAAKVLESFNITED 58
Query: 136 KAREAVVS-IWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFI 194
K E V I H ++ T + ++ K+V E +++ +R +NF+
Sbjct: 59 KVIEEVEKLIGHGQDHVGT---------------LHYTPRAKKVIELSMDEARKLHHNFV 103
Query: 195 APEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENS 254
EHI LGL ++G A RV L D+N +++ + ++ K P ++ + S
Sbjct: 104 GTEHILLGLIRENEGVAARVFANL--DLN------ITKARAQVVKALGNPEMSNKNAQAS 155
Query: 255 ISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP 314
S T L S R DLT A + +DPVIGR+ EI R+I++L RRTKNNP
Sbjct: 156 KSNNTPTLDSLAR-----------DLTVIAKDGTLDPVIGRDKEITRVIEVLSRRTKNNP 204
Query: 315 ILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTL 374
+L+GE GVGKTAIAEGLA IV EVP L KR+MSLDMG ++AG K RGE E R+ +
Sbjct: 205 VLIGEPGVGKTAIAEGLAQAIVNNEVPETLKDKRVMSLDMGTVVAGTKYRGEFEERLKKV 264
Query: 375 ISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDE 434
+ EIQ++G+VILFIDE+HTL+G+G G +G +D SN+LKP+L RGELQCI +TT DE
Sbjct: 265 MEEIQQAGNVILFIDELHTLVGAG----GAEG-AIDASNILKPALARGELQCIGATTLDE 319
Query: 435 HRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSA 494
+R EKD AL RRFQPV + EPS D V IL GLR++YEAHH + EAI AAV LS
Sbjct: 320 YRKNIEKDAALERRFQPVQVDEPSVVDTVAILKGLRDRYEAHHRINISDEAIEAAVKLSN 379
Query: 495 RYISDRYLPDKAIDLVDEAGSRAHI--------------ELFKRKKEQQTCILSKPPDDY 540
RY+SDR+LPDKAIDL+DEA S+ + E+ K K E+ + +
Sbjct: 380 RYVSDRFLPDKAIDLIDEASSKVRLKSHTTPNNLKEIEQEIEKVKNEKDAAV-------H 432
Query: 541 WQEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAV 600
QE + + +Y++ +T + S + +DIA V
Sbjct: 433 AQEFENAANLRDKQTKLEKQYEEAKNEWKNTQNGMSTS-------------LSEEDIAEV 479
Query: 601 ASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTA 660
+ W+GIP+ +I E L+ LE+ L +RVIGQ +AV +IS+AV+R+R GLKDP RP
Sbjct: 480 IAGWTGIPLTKINETESEKLLSLEDTLHERVIGQKDAVNSISKAVRRARAGLKDPKRPIG 539
Query: 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEG 720
+ +F GPTGVGKTELA++LA FG + +M+R+DMSE+ME+H VS+L+G+PPGYVG+++G
Sbjct: 540 SFIFLGPTGVGKTELARALAESMFGDDDAMIRVDMSEFMEKHAVSRLVGAPPGYVGHDDG 599
Query: 721 GLLTEAIRRRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSN 780
G LTE +RR+P++++L DEIEKAHPD+FNILLQV +DGHLTD+ GR V F+N +I+MTSN
Sbjct: 600 GQLTEKVRRKPYSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGRTVDFRNTIIIMTSN 659
Query: 781 VGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEK 840
VG+ + R G ++ Y ++ +++ELK FRPE LNR+D+++VF L K
Sbjct: 660 VGAQELQDQRFAGFGG---SSDGQDYETIRKTMLKELKNSFRPEFLNRVDDIIVFHKLTK 716
Query: 841 AQVCQL 846
++ ++
Sbjct: 717 EELKEI 722
>sp|Q6GBW3|CLPC_STAAS ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain MSSA476) GN=clpC PE=3
SV=1
Length = 818
Score = 621 bits (1602), Expect = e-177, Method: Compositional matrix adjust.
Identities = 346/778 (44%), Positives = 488/778 (62%), Gaps = 69/778 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGF----LES-GITID 135
+F R TERA + + +Q EA L + T+HLLLGL+ E P G LES IT D
Sbjct: 2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKE---PEGIAAKVLESFNITED 58
Query: 136 KAREAVVS-IWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFI 194
K E V I H ++ T + ++ K+V E +++ +R +NF+
Sbjct: 59 KVIEEVEKLIGHGQDHVGT---------------LHYTPRAKKVIELSMDEARKLHHNFV 103
Query: 195 APEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENS 254
EHI LGL ++G A RV L D+N +++ + ++ K P ++ + S
Sbjct: 104 GTEHILLGLIRENEGVAARVFANL--DLN------ITKARAQVVKALGNPEMSNKNAQAS 155
Query: 255 ISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP 314
S T L S R DLT A + +DPVIGR+ EI R+I++L RRTKNNP
Sbjct: 156 KSNNTPTLDSLAR-----------DLTVIAKDGTLDPVIGRDKEITRVIEVLSRRTKNNP 204
Query: 315 ILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTL 374
+L+GE GVGKTAIAEGLA IV EVP L KR+MSLDMG ++AG K RGE E R+ +
Sbjct: 205 VLIGEPGVGKTAIAEGLAQAIVNNEVPETLKDKRVMSLDMGTVVAGTKYRGEFEERLKKV 264
Query: 375 ISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDE 434
+ EIQ++G+VILFIDE+HTL+G+G G +G +D SN+LKP+L RGELQCI +TT DE
Sbjct: 265 MEEIQQAGNVILFIDELHTLVGAG----GAEG-AIDASNILKPALARGELQCIGATTLDE 319
Query: 435 HRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSA 494
+R EKD AL RRFQPV + EPS D V IL GLR++YEAHH + EAI AAV LS
Sbjct: 320 YRKNIEKDAALERRFQPVQVDEPSVVDTVAILKGLRDRYEAHHRINISDEAIEAAVKLSN 379
Query: 495 RYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVV 554
RY+SDR+LPDKAIDL+DEA S+ + ++ + QEI V+ +
Sbjct: 380 RYVSDRFLPDKAIDLIDEASSKVRL---------KSHTTPNNLKEIEQEIEKVKNEKDAA 430
Query: 555 QGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVG------PDDIAAVASLWSGIP 608
++ ++++ A++ D + +E A ++ + A G +DIA V + W+GIP
Sbjct: 431 VHAQ-EFEN-AANLRD-KQTKLEKQYEEAKNEWKNAQNGMSTSLSEEDIAEVIAGWTGIP 487
Query: 609 VQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPT 668
+ +I E L+ LE+ L +RVIGQ +AV +IS+AV+R+R GLKDP RP + +F GPT
Sbjct: 488 LTKINETESEKLLSLEDTLHERVIGQKDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPT 547
Query: 669 GVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIR 728
GVGKTELA++LA FG + +M+R+DMSE+ME+H VS+L+G+PPGYVG+++GG LTE +R
Sbjct: 548 GVGKTELARALAESMFGDDDAMIRVDMSEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVR 607
Query: 729 RRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAK 788
R+P++++L DEIEKAHPD+FNILLQV +DGHLTD+ GR V F+N +I+MTSNVG+ +
Sbjct: 608 RKPYSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGRTVDFRNTIIIMTSNVGAQELQD 667
Query: 789 GRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQL 846
R G ++ Y ++ +++ELK FRPE LNR+D+++VF L K ++ ++
Sbjct: 668 QRFAGFGG---SSDGQDYETIRKTMLKELKNSFRPEFLNRVDDIIVFHKLTKEELKEI 722
>sp|Q6GJE4|CLPC_STAAR ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain MRSA252) GN=clpC PE=3
SV=1
Length = 818
Score = 621 bits (1602), Expect = e-177, Method: Compositional matrix adjust.
Identities = 346/778 (44%), Positives = 488/778 (62%), Gaps = 69/778 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGF----LES-GITID 135
+F R TERA + + +Q EA L + T+HLLLGL+ E P G LES IT D
Sbjct: 2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKE---PEGIAAKVLESFNITED 58
Query: 136 KAREAVVS-IWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFI 194
K E V I H ++ T + ++ K+V E +++ +R +NF+
Sbjct: 59 KVIEEVEKLIGHGQDHVGT---------------LHYTPRAKKVIELSMDEARKLHHNFV 103
Query: 195 APEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENS 254
EHI LGL ++G A RV L D+N +++ + ++ K P ++ + S
Sbjct: 104 GTEHILLGLIRENEGVAARVFANL--DLN------ITKARAQVVKALGNPEMSNKNAQAS 155
Query: 255 ISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP 314
S T L S R DLT A + +DPVIGR+ EI R+I++L RRTKNNP
Sbjct: 156 KSNNTPTLDSLAR-----------DLTVIAKDGTLDPVIGRDKEITRVIEVLSRRTKNNP 204
Query: 315 ILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTL 374
+L+GE GVGKTAIAEGLA IV EVP L KR+MSLDMG ++AG K RGE E R+ +
Sbjct: 205 VLIGEPGVGKTAIAEGLAQAIVNNEVPETLKDKRVMSLDMGTVVAGTKYRGEFEERLKKV 264
Query: 375 ISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDE 434
+ EIQ++G+VILFIDE+HTL+G+G G +G +D SN+LKP+L RGELQCI +TT DE
Sbjct: 265 MEEIQQAGNVILFIDELHTLVGAG----GAEG-AIDASNILKPALARGELQCIGATTLDE 319
Query: 435 HRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSA 494
+R EKD AL RRFQPV + EPS D V IL GLR++YEAHH + EAI AAV LS
Sbjct: 320 YRKNIEKDAALERRFQPVQVDEPSVVDTVAILKGLRDRYEAHHRINISDEAIEAAVKLSN 379
Query: 495 RYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVV 554
RY+SDR+LPDKAIDL+DEA S+ + ++ + QEI V+ +
Sbjct: 380 RYVSDRFLPDKAIDLIDEASSKVRL---------KSHTTPNNLKEIEQEIEKVKNEKDAA 430
Query: 555 QGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVG------PDDIAAVASLWSGIP 608
++ ++++ A++ D + +E A ++ + A G +DIA V + W+GIP
Sbjct: 431 VHAQ-EFEN-AANLRD-KQTKLEKQYEEAKNEWKNAQNGMSTSLSEEDIAEVIAGWTGIP 487
Query: 609 VQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPT 668
+ +I E L+ LE+ L +RVIGQ +AV +IS+AV+R+R GLKDP RP + +F GPT
Sbjct: 488 LTKINETESEKLLSLEDTLHERVIGQKDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPT 547
Query: 669 GVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIR 728
GVGKTELA++LA FG + +M+R+DMSE+ME+H VS+L+G+PPGYVG+++GG LTE +R
Sbjct: 548 GVGKTELARALAESMFGDDDAMIRVDMSEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVR 607
Query: 729 RRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAK 788
R+P++++L DEIEKAHPD+FNILLQV +DGHLTD+ GR V F+N +I+MTSNVG+ +
Sbjct: 608 RKPYSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGRTVDFRNTIIIMTSNVGAQELQD 667
Query: 789 GRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQL 846
R G ++ Y ++ +++ELK FRPE LNR+D+++VF L K ++ ++
Sbjct: 668 QRFAGFGG---SSDGQDYETIRKTMLKELKNSFRPEFLNRVDDIIVFHKLTKEELKEI 722
>sp|Q7A797|CLPC_STAAN ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain N315) GN=clpC PE=1 SV=1
Length = 818
Score = 621 bits (1602), Expect = e-177, Method: Compositional matrix adjust.
Identities = 346/778 (44%), Positives = 488/778 (62%), Gaps = 69/778 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGF----LES-GITID 135
+F R TERA + + +Q EA L + T+HLLLGL+ E P G LES IT D
Sbjct: 2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKE---PEGIAAKVLESFNITED 58
Query: 136 KAREAVVS-IWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFI 194
K E V I H ++ T + ++ K+V E +++ +R +NF+
Sbjct: 59 KVIEEVEKLIGHGQDHVGT---------------LHYTPRAKKVIELSMDEARKLHHNFV 103
Query: 195 APEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENS 254
EHI LGL ++G A RV L D+N +++ + ++ K P ++ + S
Sbjct: 104 GTEHILLGLIRENEGVAARVFANL--DLN------ITKARAQVVKALGNPEMSNKNAQAS 155
Query: 255 ISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP 314
S T L S R DLT A + +DPVIGR+ EI R+I++L RRTKNNP
Sbjct: 156 KSNNTPTLDSLAR-----------DLTVIAKDGTLDPVIGRDKEITRVIEVLSRRTKNNP 204
Query: 315 ILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTL 374
+L+GE GVGKTAIAEGLA IV EVP L KR+MSLDMG ++AG K RGE E R+ +
Sbjct: 205 VLIGEPGVGKTAIAEGLAQAIVNNEVPETLKDKRVMSLDMGTVVAGTKYRGEFEERLKKV 264
Query: 375 ISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDE 434
+ EIQ++G+VILFIDE+HTL+G+G G +G +D SN+LKP+L RGELQCI +TT DE
Sbjct: 265 MEEIQQAGNVILFIDELHTLVGAG----GAEG-AIDASNILKPALARGELQCIGATTLDE 319
Query: 435 HRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSA 494
+R EKD AL RRFQPV + EPS D V IL GLR++YEAHH + EAI AAV LS
Sbjct: 320 YRKNIEKDAALERRFQPVQVDEPSVVDTVAILKGLRDRYEAHHRINISDEAIEAAVKLSN 379
Query: 495 RYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVV 554
RY+SDR+LPDKAIDL+DEA S+ + ++ + QEI V+ +
Sbjct: 380 RYVSDRFLPDKAIDLIDEASSKVRL---------KSHTTPNNLKEIEQEIEKVKNEKDAA 430
Query: 555 QGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVG------PDDIAAVASLWSGIP 608
++ ++++ A++ D + +E A ++ + A G +DIA V + W+GIP
Sbjct: 431 VHAQ-EFEN-AANLRD-KQTKLEKQYEEAKNEWKNAQNGMSTSLSEEDIAEVIAGWTGIP 487
Query: 609 VQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPT 668
+ +I E L+ LE+ L +RVIGQ +AV +IS+AV+R+R GLKDP RP + +F GPT
Sbjct: 488 LTKINETESEKLLSLEDTLHERVIGQKDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPT 547
Query: 669 GVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIR 728
GVGKTELA++LA FG + +M+R+DMSE+ME+H VS+L+G+PPGYVG+++GG LTE +R
Sbjct: 548 GVGKTELARALAESMFGDDDAMIRVDMSEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVR 607
Query: 729 RRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAK 788
R+P++++L DEIEKAHPD+FNILLQV +DGHLTD+ GR V F+N +I+MTSNVG+ +
Sbjct: 608 RKPYSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGRTVDFRNTIIIMTSNVGAQELQD 667
Query: 789 GRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQL 846
R G ++ Y ++ +++ELK FRPE LNR+D+++VF L K ++ ++
Sbjct: 668 QRFAGFGG---SSDGQDYETIRKTMLKELKNSFRPEFLNRVDDIIVFHKLTKEELKEI 722
>sp|Q99W78|CLPC_STAAM ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain Mu50 / ATCC 700699)
GN=clpC PE=1 SV=1
Length = 818
Score = 621 bits (1602), Expect = e-177, Method: Compositional matrix adjust.
Identities = 346/778 (44%), Positives = 488/778 (62%), Gaps = 69/778 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGF----LES-GITID 135
+F R TERA + + +Q EA L + T+HLLLGL+ E P G LES IT D
Sbjct: 2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKE---PEGIAAKVLESFNITED 58
Query: 136 KAREAVVS-IWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFI 194
K E V I H ++ T + ++ K+V E +++ +R +NF+
Sbjct: 59 KVIEEVEKLIGHGQDHVGT---------------LHYTPRAKKVIELSMDEARKLHHNFV 103
Query: 195 APEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENS 254
EHI LGL ++G A RV L D+N +++ + ++ K P ++ + S
Sbjct: 104 GTEHILLGLIRENEGVAARVFANL--DLN------ITKARAQVVKALGNPEMSNKNAQAS 155
Query: 255 ISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP 314
S T L S R DLT A + +DPVIGR+ EI R+I++L RRTKNNP
Sbjct: 156 KSNNTPTLDSLAR-----------DLTVIAKDGTLDPVIGRDKEITRVIEVLSRRTKNNP 204
Query: 315 ILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTL 374
+L+GE GVGKTAIAEGLA IV EVP L KR+MSLDMG ++AG K RGE E R+ +
Sbjct: 205 VLIGEPGVGKTAIAEGLAQAIVNNEVPETLKDKRVMSLDMGTVVAGTKYRGEFEERLKKV 264
Query: 375 ISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDE 434
+ EIQ++G+VILFIDE+HTL+G+G G +G +D SN+LKP+L RGELQCI +TT DE
Sbjct: 265 MEEIQQAGNVILFIDELHTLVGAG----GAEG-AIDASNILKPALARGELQCIGATTLDE 319
Query: 435 HRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSA 494
+R EKD AL RRFQPV + EPS D V IL GLR++YEAHH + EAI AAV LS
Sbjct: 320 YRKNIEKDAALERRFQPVQVDEPSVVDTVAILKGLRDRYEAHHRINISDEAIEAAVKLSN 379
Query: 495 RYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVV 554
RY+SDR+LPDKAIDL+DEA S+ + ++ + QEI V+ +
Sbjct: 380 RYVSDRFLPDKAIDLIDEASSKVRL---------KSHTTPNNLKEIEQEIEKVKNEKDAA 430
Query: 555 QGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVG------PDDIAAVASLWSGIP 608
++ ++++ A++ D + +E A ++ + A G +DIA V + W+GIP
Sbjct: 431 VHAQ-EFEN-AANLRD-KQTKLEKQYEEAKNEWKNAQNGMSTSLSEEDIAEVIAGWTGIP 487
Query: 609 VQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPT 668
+ +I E L+ LE+ L +RVIGQ +AV +IS+AV+R+R GLKDP RP + +F GPT
Sbjct: 488 LTKINETESEKLLSLEDTLHERVIGQKDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPT 547
Query: 669 GVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIR 728
GVGKTELA++LA FG + +M+R+DMSE+ME+H VS+L+G+PPGYVG+++GG LTE +R
Sbjct: 548 GVGKTELARALAESMFGDDDAMIRVDMSEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVR 607
Query: 729 RRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAK 788
R+P++++L DEIEKAHPD+FNILLQV +DGHLTD+ GR V F+N +I+MTSNVG+ +
Sbjct: 608 RKPYSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGRTVDFRNTIIIMTSNVGAQELQD 667
Query: 789 GRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQL 846
R G ++ Y ++ +++ELK FRPE LNR+D+++VF L K ++ ++
Sbjct: 668 QRFAGFGG---SSDGQDYETIRKTMLKELKNSFRPEFLNRVDDIIVFHKLTKEELKEI 722
>sp|P0C281|CLPC_STAAC ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain COL) GN=clpC PE=3 SV=1
Length = 818
Score = 621 bits (1602), Expect = e-177, Method: Compositional matrix adjust.
Identities = 346/778 (44%), Positives = 488/778 (62%), Gaps = 69/778 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGF----LES-GITID 135
+F R TERA + + +Q EA L + T+HLLLGL+ E P G LES IT D
Sbjct: 2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKE---PEGIAAKVLESFNITED 58
Query: 136 KAREAVVS-IWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFI 194
K E V I H ++ T + ++ K+V E +++ +R +NF+
Sbjct: 59 KVIEEVEKLIGHGQDHVGT---------------LHYTPRAKKVIELSMDEARKLHHNFV 103
Query: 195 APEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENS 254
EHI LGL ++G A RV L D+N +++ + ++ K P ++ + S
Sbjct: 104 GTEHILLGLIRENEGVAARVFANL--DLN------ITKARAQVVKALGNPEMSNKNAQAS 155
Query: 255 ISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP 314
S T L S R DLT A + +DPVIGR+ EI R+I++L RRTKNNP
Sbjct: 156 KSNNTPTLDSLAR-----------DLTVIAKDGTLDPVIGRDKEITRVIEVLSRRTKNNP 204
Query: 315 ILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTL 374
+L+GE GVGKTAIAEGLA IV EVP L KR+MSLDMG ++AG K RGE E R+ +
Sbjct: 205 VLIGEPGVGKTAIAEGLAQAIVNNEVPETLKDKRVMSLDMGTVVAGTKYRGEFEERLKKV 264
Query: 375 ISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDE 434
+ EIQ++G+VILFIDE+HTL+G+G G +G +D SN+LKP+L RGELQCI +TT DE
Sbjct: 265 MEEIQQAGNVILFIDELHTLVGAG----GAEG-AIDASNILKPALARGELQCIGATTLDE 319
Query: 435 HRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSA 494
+R EKD AL RRFQPV + EPS D V IL GLR++YEAHH + EAI AAV LS
Sbjct: 320 YRKNIEKDAALERRFQPVQVDEPSVVDTVAILKGLRDRYEAHHRINISDEAIEAAVKLSN 379
Query: 495 RYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVV 554
RY+SDR+LPDKAIDL+DEA S+ + ++ + QEI V+ +
Sbjct: 380 RYVSDRFLPDKAIDLIDEASSKVRL---------KSHTTPNNLKEIEQEIEKVKNEKDAA 430
Query: 555 QGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVG------PDDIAAVASLWSGIP 608
++ ++++ A++ D + +E A ++ + A G +DIA V + W+GIP
Sbjct: 431 VHAQ-EFEN-AANLRD-KQTKLEKQYEEAKNEWKNAQNGMSTSLSEEDIAEVIAGWTGIP 487
Query: 609 VQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPT 668
+ +I E L+ LE+ L +RVIGQ +AV +IS+AV+R+R GLKDP RP + +F GPT
Sbjct: 488 LTKINETESEKLLSLEDTLHERVIGQKDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPT 547
Query: 669 GVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIR 728
GVGKTELA++LA FG + +M+R+DMSE+ME+H VS+L+G+PPGYVG+++GG LTE +R
Sbjct: 548 GVGKTELARALAESMFGDDDAMIRVDMSEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVR 607
Query: 729 RRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAK 788
R+P++++L DEIEKAHPD+FNILLQV +DGHLTD+ GR V F+N +I+MTSNVG+ +
Sbjct: 608 RKPYSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGRTVDFRNTIIIMTSNVGAQELQD 667
Query: 789 GRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQL 846
R G ++ Y ++ +++ELK FRPE LNR+D+++VF L K ++ ++
Sbjct: 668 QRFAGFGG---SSDGQDYETIRKTMLKELKNSFRPEFLNRVDDIIVFHKLTKEELKEI 722
>sp|Q2G0P5|CLPC_STAA8 ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain NCTC 8325) GN=clpC PE=1
SV=1
Length = 818
Score = 621 bits (1602), Expect = e-177, Method: Compositional matrix adjust.
Identities = 346/778 (44%), Positives = 488/778 (62%), Gaps = 69/778 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGF----LES-GITID 135
+F R TERA + + +Q EA L + T+HLLLGL+ E P G LES IT D
Sbjct: 2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKE---PEGIAAKVLESFNITED 58
Query: 136 KAREAVVS-IWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFI 194
K E V I H ++ T + ++ K+V E +++ +R +NF+
Sbjct: 59 KVIEEVEKLIGHGQDHVGT---------------LHYTPRAKKVIELSMDEARKLHHNFV 103
Query: 195 APEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENS 254
EHI LGL ++G A RV L D+N +++ + ++ K P ++ + S
Sbjct: 104 GTEHILLGLIRENEGVAARVFANL--DLN------ITKARAQVVKALGNPEMSNKNAQAS 155
Query: 255 ISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP 314
S T L S R DLT A + +DPVIGR+ EI R+I++L RRTKNNP
Sbjct: 156 KSNNTPTLDSLAR-----------DLTVIAKDGTLDPVIGRDKEITRVIEVLSRRTKNNP 204
Query: 315 ILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTL 374
+L+GE GVGKTAIAEGLA IV EVP L KR+MSLDMG ++AG K RGE E R+ +
Sbjct: 205 VLIGEPGVGKTAIAEGLAQAIVNNEVPETLKDKRVMSLDMGTVVAGTKYRGEFEERLKKV 264
Query: 375 ISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDE 434
+ EIQ++G+VILFIDE+HTL+G+G G +G +D SN+LKP+L RGELQCI +TT DE
Sbjct: 265 MEEIQQAGNVILFIDELHTLVGAG----GAEG-AIDASNILKPALARGELQCIGATTLDE 319
Query: 435 HRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSA 494
+R EKD AL RRFQPV + EPS D V IL GLR++YEAHH + EAI AAV LS
Sbjct: 320 YRKNIEKDAALERRFQPVQVDEPSVVDTVAILKGLRDRYEAHHRINISDEAIEAAVKLSN 379
Query: 495 RYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVV 554
RY+SDR+LPDKAIDL+DEA S+ + ++ + QEI V+ +
Sbjct: 380 RYVSDRFLPDKAIDLIDEASSKVRL---------KSHTTPNNLKEIEQEIEKVKNEKDAA 430
Query: 555 QGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVG------PDDIAAVASLWSGIP 608
++ ++++ A++ D + +E A ++ + A G +DIA V + W+GIP
Sbjct: 431 VHAQ-EFEN-AANLRD-KQTKLEKQYEEAKNEWKNAQNGMSTSLSEEDIAEVIAGWTGIP 487
Query: 609 VQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPT 668
+ +I E L+ LE+ L +RVIGQ +AV +IS+AV+R+R GLKDP RP + +F GPT
Sbjct: 488 LTKINETESEKLLSLEDTLHERVIGQKDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPT 547
Query: 669 GVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIR 728
GVGKTELA++LA FG + +M+R+DMSE+ME+H VS+L+G+PPGYVG+++GG LTE +R
Sbjct: 548 GVGKTELARALAESMFGDDDAMIRVDMSEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVR 607
Query: 729 RRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAK 788
R+P++++L DEIEKAHPD+FNILLQV +DGHLTD+ GR V F+N +I+MTSNVG+ +
Sbjct: 608 RKPYSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGRTVDFRNTIIIMTSNVGAQELQD 667
Query: 789 GRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQL 846
R G ++ Y ++ +++ELK FRPE LNR+D+++VF L K ++ ++
Sbjct: 668 QRFAGFGG---SSDGQDYETIRKTMLKELKNSFRPEFLNRVDDIIVFHKLTKEELKEI 722
>sp|Q2FJB5|CLPC_STAA3 ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain USA300) GN=clpC PE=3
SV=1
Length = 818
Score = 621 bits (1602), Expect = e-177, Method: Compositional matrix adjust.
Identities = 346/778 (44%), Positives = 488/778 (62%), Gaps = 69/778 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGF----LES-GITID 135
+F R TERA + + +Q EA L + T+HLLLGL+ E P G LES IT D
Sbjct: 2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKE---PEGIAAKVLESFNITED 58
Query: 136 KAREAVVS-IWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFI 194
K E V I H ++ T + ++ K+V E +++ +R +NF+
Sbjct: 59 KVIEEVEKLIGHGQDHVGT---------------LHYTPRAKKVIELSMDEARKLHHNFV 103
Query: 195 APEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENS 254
EHI LGL ++G A RV L D+N +++ + ++ K P ++ + S
Sbjct: 104 GTEHILLGLIRENEGVAARVFANL--DLN------ITKARAQVVKALGNPEMSNKNAQAS 155
Query: 255 ISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP 314
S T L S R DLT A + +DPVIGR+ EI R+I++L RRTKNNP
Sbjct: 156 KSNNTPTLDSLAR-----------DLTVIAKDGTLDPVIGRDKEITRVIEVLSRRTKNNP 204
Query: 315 ILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTL 374
+L+GE GVGKTAIAEGLA IV EVP L KR+MSLDMG ++AG K RGE E R+ +
Sbjct: 205 VLIGEPGVGKTAIAEGLAQAIVNNEVPETLKDKRVMSLDMGTVVAGTKYRGEFEERLKKV 264
Query: 375 ISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDE 434
+ EIQ++G+VILFIDE+HTL+G+G G +G +D SN+LKP+L RGELQCI +TT DE
Sbjct: 265 MEEIQQAGNVILFIDELHTLVGAG----GAEG-AIDASNILKPALARGELQCIGATTLDE 319
Query: 435 HRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSA 494
+R EKD AL RRFQPV + EPS D V IL GLR++YEAHH + EAI AAV LS
Sbjct: 320 YRKNIEKDAALERRFQPVQVDEPSVVDTVAILKGLRDRYEAHHRINISDEAIEAAVKLSN 379
Query: 495 RYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVV 554
RY+SDR+LPDKAIDL+DEA S+ + ++ + QEI V+ +
Sbjct: 380 RYVSDRFLPDKAIDLIDEASSKVRL---------KSHTTPNNLKEIEQEIEKVKNEKDAA 430
Query: 555 QGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVG------PDDIAAVASLWSGIP 608
++ ++++ A++ D + +E A ++ + A G +DIA V + W+GIP
Sbjct: 431 VHAQ-EFEN-AANLRD-KQTKLEKQYEEAKNEWKNAQNGMSTSLSEEDIAEVIAGWTGIP 487
Query: 609 VQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPT 668
+ +I E L+ LE+ L +RVIGQ +AV +IS+AV+R+R GLKDP RP + +F GPT
Sbjct: 488 LTKINETESEKLLSLEDTLHERVIGQKDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPT 547
Query: 669 GVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIR 728
GVGKTELA++LA FG + +M+R+DMSE+ME+H VS+L+G+PPGYVG+++GG LTE +R
Sbjct: 548 GVGKTELARALAESMFGDDDAMIRVDMSEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVR 607
Query: 729 RRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAK 788
R+P++++L DEIEKAHPD+FNILLQV +DGHLTD+ GR V F+N +I+MTSNVG+ +
Sbjct: 608 RKPYSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGRTVDFRNTIIIMTSNVGAQELQD 667
Query: 789 GRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQL 846
R G ++ Y ++ +++ELK FRPE LNR+D+++VF L K ++ ++
Sbjct: 668 QRFAGFGG---SSDGQDYETIRKTMLKELKNSFRPEFLNRVDDIIVFHKLTKEELKEI 722
>sp|Q4L3I4|CLPC_STAHJ ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus haemolyticus (strain JCSC1435) GN=clpC
PE=3 SV=1
Length = 824
Score = 619 bits (1595), Expect = e-176, Method: Compositional matrix adjust.
Identities = 337/785 (42%), Positives = 470/785 (59%), Gaps = 83/785 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGF----LES-GITID 135
+F R TERA + + +Q EA L + T+HLLLGL+ E P G LES IT D
Sbjct: 2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKE---PEGIAAKVLESFNITED 58
Query: 136 KAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIA 195
K E V + +Q + ++ K+V E +++ +R +NF+
Sbjct: 59 KVIEEVEKLIGHGQDQ--------------TGTLHYTPRAKKVIELSMDEARKLHHNFVG 104
Query: 196 PEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSI 255
EHI LGL ++G A RV L +++ A V K + +
Sbjct: 105 TEHILLGLIRENEGVAARVFANLDLNITKARAQVV-----------------KALGSPEM 147
Query: 256 SGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPI 315
S K A T L+ DLT A + +DPV+GR+ EI R+I++L RRTKNNP+
Sbjct: 148 SNKNATANKSNNT--PTLDGLARDLTVIAKDGTLDPVVGRDKEITRVIEVLSRRTKNNPV 205
Query: 316 LLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLI 375
L+GE GVGKTAIAEGLA IV EVP L KR+MSLDMG ++AG K RGE E R+ ++
Sbjct: 206 LIGEPGVGKTAIAEGLAQAIVNNEVPETLKGKRVMSLDMGTVVAGTKYRGEFEERLKKVM 265
Query: 376 SEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEH 435
EI ++G+VILFIDE+HTL+G+G G +G +D SN+LKP+L RGELQCI +TT DE+
Sbjct: 266 EEIHQAGNVILFIDELHTLVGAG----GAEG-AIDASNILKPALARGELQCIGATTLDEY 320
Query: 436 RTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495
R EKD AL RRFQP+ + EP+ ED + IL GLR++YEAHH + EA+ AA LS
Sbjct: 321 RKNIEKDAALERRFQPIQVDEPTVEDTIAILKGLRDRYEAHHRINISDEALEAAAKLSDC 380
Query: 496 YISDRYLPDKAIDLVDEAGSRAHI--------------ELFKRKKEQQTCILSKPPDDYW 541
Y+SDR+LPDKAIDL+DEA S+ + E+ K K E+ + +
Sbjct: 381 YVSDRFLPDKAIDLIDEASSKVRLKSHTTPNNLKEIEQEIEKVKNEKDAAV-------HA 433
Query: 542 QEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVA 601
QE + + +Y+D T D+ + +DI V
Sbjct: 434 QEFENAANLRDKQTKLEKQYEDAKNEWKTTQ-------------GDQSTSLSKEDIGEVI 480
Query: 602 SLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAA 661
+ W+GIP+ +I E L+ LE+ L RVIGQ++AV +IS+AV+R+R GLKDP RP +
Sbjct: 481 AGWTGIPLTKINETESDRLLNLEQTLHDRVIGQNDAVTSISKAVRRARAGLKDPKRPIGS 540
Query: 662 MLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGG 721
+F GPTGVGKTELA++LA FG E +M+R+DMSE+ME+H VS+L+G+PPGYVG++EGG
Sbjct: 541 FIFLGPTGVGKTELARALAESMFGEEDAMIRVDMSEFMEKHAVSRLVGAPPGYVGHDEGG 600
Query: 722 LLTEAIRRRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNV 781
LTE +RR+P++++L DEIEKAHPD+FNILLQV +DGHLTD+ GR+V F+N +I+MTSNV
Sbjct: 601 QLTEKVRRKPYSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGRQVDFRNTVIIMTSNV 660
Query: 782 GSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKA 841
G+ + R G +E Y ++ +++ELK FRPE LNR+D+++VF L K
Sbjct: 661 GAQELQDQRFAGFGG---GSEGHDYETIRKTMMKELKNSFRPEFLNRVDDIIVFHKLSKD 717
Query: 842 QVCQL 846
++ ++
Sbjct: 718 ELKEI 722
>sp|Q8NXY8|CLPC_STAAW ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain MW2) GN=clpC PE=3 SV=1
Length = 818
Score = 617 bits (1592), Expect = e-176, Method: Compositional matrix adjust.
Identities = 345/778 (44%), Positives = 487/778 (62%), Gaps = 69/778 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGF----LES-GITID 135
+F R TERA + + +Q EA L + T+HLLLGL+ E P G LES IT D
Sbjct: 2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKE---PEGIAAKVLESFNITED 58
Query: 136 KAREAVVS-IWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFI 194
K E V I H ++ T + ++ K+V E +++ +R +NF+
Sbjct: 59 KVIEEVEKLIGHGQDHVGT---------------LHYTPRAKKVIELSMDEARKLHHNFV 103
Query: 195 APEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENS 254
EHI LGL ++G A RV L D+N +++ + ++ K P ++ + S
Sbjct: 104 GTEHILLGLIRENEGVAARVFANL--DLN------ITKARAQVVKALGNPEMSNKNAQAS 155
Query: 255 ISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP 314
S T L S R DLT A + +DPVIGR+ EI R+I++L RRTKNNP
Sbjct: 156 KSNNTPTLDSLAR-----------DLTVIAKDGTLDPVIGRDKEITRVIEVLSRRTKNNP 204
Query: 315 ILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTL 374
+L+GE GVGKTAIAEGLA IV EVP L KR+MSLDMG ++AG K RGE E R+ +
Sbjct: 205 VLIGEPGVGKTAIAEGLAQAIVNNEVPETLKDKRVMSLDMGTVVAGTKYRGEFEERLKKV 264
Query: 375 ISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDE 434
+ EIQ++G+VILFIDE+HTL+G+G G +G +D SN+LKP+L RGELQCI +TT DE
Sbjct: 265 MEEIQQAGNVILFIDELHTLVGAG----GAEG-AIDASNILKPALARGELQCIGATTLDE 319
Query: 435 HRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSA 494
+R EKD AL RRFQPV + EPS D V IL GLR++YEAHH + EAI AAV LS
Sbjct: 320 YRKNIEKDAALERRFQPVQVDEPSVVDTVAILKGLRDRYEAHHRINISDEAIEAAVKLSN 379
Query: 495 RYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVV 554
RY+SDR+LPDKAIDL+DEA S+ + ++ + QEI V+ +
Sbjct: 380 RYVSDRFLPDKAIDLIDEASSKVRL---------KSHTTPNNLKEIEQEIEKVKNEKDAA 430
Query: 555 QGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVG------PDDIAAVASLWSGIP 608
++ ++++ A++ D + +E A ++ + A G +DIA V + W+GIP
Sbjct: 431 VHAQ-EFEN-AANLRD-KQTKLEKQYEEAKNEWKNAQNGMSTSLSEEDIAEVIAGWTGIP 487
Query: 609 VQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPT 668
+ +I E L+ LE+ L +RVIGQ +AV +IS+AV+R+R GLKDP RP + +F GPT
Sbjct: 488 LTKINETESEKLLSLEDTLHERVIGQKDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPT 547
Query: 669 GVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIR 728
GVGKTELA++LA FG + +M+R+DMSE+ME+H VS+L+G+P GYVG+++GG LTE +R
Sbjct: 548 GVGKTELARALAESMFGDDDAMIRVDMSEFMEKHAVSRLVGAPLGYVGHDDGGQLTEKVR 607
Query: 729 RRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAK 788
R+P++++L DEIEKAHPD+FNILLQV +DGHLTD+ GR V F+N +I+MTSNVG+ +
Sbjct: 608 RKPYSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGRTVDFRNTIIIMTSNVGAQELQD 667
Query: 789 GRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQL 846
R G ++ Y ++ +++ELK FRPE LNR+D+++VF L K ++ ++
Sbjct: 668 QRFAGFGG---SSDGQDYETIRKTMLKELKNSFRPEFLNRVDDIIVFHKLTKEELKEI 722
>sp|Q8CQ88|CLPC_STAES ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus epidermidis (strain ATCC 12228)
GN=clpC PE=3 SV=1
Length = 817
Score = 617 bits (1591), Expect = e-175, Method: Compositional matrix adjust.
Identities = 336/786 (42%), Positives = 474/786 (60%), Gaps = 85/786 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-----FLESGITID 135
+F R TERA + + +Q EA L + T+HLLLGL+ E P G + IT D
Sbjct: 2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKE---PEGIAAKVLVSFNITED 58
Query: 136 KAREAVVS-IWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFI 194
K E V I H T + ++ K+V E +++ +R +NF+
Sbjct: 59 KVIEEVEKLIGHGQEQMGT---------------LHYTPRAKKVIELSMDEARKLHHNFV 103
Query: 195 APEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENS 254
EHI LGL ++G A RV L +++ A V K +
Sbjct: 104 GTEHILLGLIRENEGVAARVFANLDLNITKARAQVV-----------------KALGSPE 146
Query: 255 ISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP 314
+S K A T L+ DLT A + +DPV+GR+ EI R+I++L RRTKNNP
Sbjct: 147 MSNKNAQANKSNNT--PTLDGLARDLTVIAKDGTLDPVVGRDKEITRVIEVLSRRTKNNP 204
Query: 315 ILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTL 374
+L+GE GVGKTAIAEGLA IV+ EVP L KR+MSLDMG ++AG K RGE E R+ +
Sbjct: 205 VLIGEPGVGKTAIAEGLAQAIVKNEVPETLKDKRVMSLDMGTVVAGTKYRGEFEERLKKV 264
Query: 375 ISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDE 434
+ EI ++G+VILFIDE+HTL+G+G G +G +D SN+LKP+L RGELQCI +TT DE
Sbjct: 265 MEEIHQAGNVILFIDELHTLVGAG----GAEG-AIDASNILKPALARGELQCIGATTLDE 319
Query: 435 HRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSA 494
+R EKD AL RRFQP+ + EP+ ED + IL GLR++YEAHH + EA+ AA LS
Sbjct: 320 YRKNIEKDAALERRFQPIQVDEPTVEDTIEILKGLRDRYEAHHRINISDEALEAAAKLSD 379
Query: 495 RYISDRYLPDKAIDLVDEAGSRAHI--------------ELFKRKKEQQTCILSKPPDDY 540
RY+SDR+LPDKAIDL+DEA S+ + E+ K K E+ + +
Sbjct: 380 RYVSDRFLPDKAIDLIDEASSKVRLKSHTTPSNLKEIEQEIDKVKNEKDAAV-------H 432
Query: 541 WQEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAV 600
QE + + +Y+D + + L +A + ++IA V
Sbjct: 433 AQEFENAANLRDKQSKLEKQYEDAKNEWKN-----AQGGLDTA--------LSEENIAEV 479
Query: 601 ASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTA 660
+ W+GIP+ +I E L+ LE+ L KRVIGQ++AV +IS+AV+R+R GLKDP RP
Sbjct: 480 IAGWTGIPLTKINETESDRLLNLEDTLHKRVIGQNDAVNSISKAVRRARAGLKDPKRPIG 539
Query: 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEG 720
+ +F GPTGVGKTELA++LA FG + +M+R+DMSE+ME+H VS+L+G+PPGYVG+++G
Sbjct: 540 SFIFLGPTGVGKTELARALAESMFGEDDAMIRVDMSEFMEKHAVSRLVGAPPGYVGHDDG 599
Query: 721 GLLTEAIRRRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSN 780
G LTE +RR+P++++L DEIEKAHPD+FNILLQV +DGHLTD+ GR V F+N +I+MTSN
Sbjct: 600 GQLTEKVRRKPYSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGRTVDFRNTVIIMTSN 659
Query: 781 VGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEK 840
VG+ + R G +E + Y ++ +++ELK FRPE LNR+D+++VF L K
Sbjct: 660 VGAQELQDQRFAGFGGA---SEGSDYETVRKTMMKELKNSFRPEFLNRVDDIIVFHKLTK 716
Query: 841 AQVCQL 846
++ ++
Sbjct: 717 DELKEI 722
>sp|Q5HRM8|CLPC_STAEQ ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus epidermidis (strain ATCC 35984 /
RP62A) GN=clpC PE=3 SV=1
Length = 817
Score = 617 bits (1591), Expect = e-175, Method: Compositional matrix adjust.
Identities = 336/786 (42%), Positives = 474/786 (60%), Gaps = 85/786 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-----FLESGITID 135
+F R TERA + + +Q EA L + T+HLLLGL+ E P G + IT D
Sbjct: 2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKE---PEGIAAKVLVSFNITED 58
Query: 136 KAREAVVS-IWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFI 194
K E V I H T + ++ K+V E +++ +R +NF+
Sbjct: 59 KVIEEVEKLIGHGQEQMGT---------------LHYTPRAKKVIELSMDEARKLHHNFV 103
Query: 195 APEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENS 254
EHI LGL ++G A RV L +++ A V K +
Sbjct: 104 GTEHILLGLIRENEGVAARVFANLDLNITKARAQVV-----------------KALGSPE 146
Query: 255 ISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP 314
+S K A T L+ DLT A + +DPV+GR+ EI R+I++L RRTKNNP
Sbjct: 147 MSNKNAQANKSNNT--PTLDGLARDLTVIAKDGTLDPVVGRDKEITRVIEVLSRRTKNNP 204
Query: 315 ILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTL 374
+L+GE GVGKTAIAEGLA IV+ EVP L KR+MSLDMG ++AG K RGE E R+ +
Sbjct: 205 VLIGEPGVGKTAIAEGLAQAIVKNEVPETLKDKRVMSLDMGTVVAGTKYRGEFEERLKKV 264
Query: 375 ISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDE 434
+ EI ++G+VILFIDE+HTL+G+G G +G +D SN+LKP+L RGELQCI +TT DE
Sbjct: 265 MEEIHQAGNVILFIDELHTLVGAG----GAEG-AIDASNILKPALARGELQCIGATTLDE 319
Query: 435 HRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSA 494
+R EKD AL RRFQP+ + EP+ ED + IL GLR++YEAHH + EA+ AA LS
Sbjct: 320 YRKNIEKDAALERRFQPIQVDEPTVEDTIEILKGLRDRYEAHHRINISDEALEAAAKLSD 379
Query: 495 RYISDRYLPDKAIDLVDEAGSRAHI--------------ELFKRKKEQQTCILSKPPDDY 540
RY+SDR+LPDKAIDL+DEA S+ + E+ K K E+ + +
Sbjct: 380 RYVSDRFLPDKAIDLIDEASSKVRLKSHTTPSNLKEIEQEIDKVKNEKDAAV-------H 432
Query: 541 WQEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAV 600
QE + + +Y+D + + L +A + ++IA V
Sbjct: 433 AQEFENAANLRDKQSKLEKQYEDAKNEWKN-----AQGGLDTA--------LSEENIAEV 479
Query: 601 ASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTA 660
+ W+GIP+ +I E L+ LE+ L KRVIGQ++AV +IS+AV+R+R GLKDP RP
Sbjct: 480 IAGWTGIPLTKINETESDRLLNLEDTLHKRVIGQNDAVNSISKAVRRARAGLKDPKRPIG 539
Query: 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEG 720
+ +F GPTGVGKTELA++LA FG + +M+R+DMSE+ME+H VS+L+G+PPGYVG+++G
Sbjct: 540 SFIFLGPTGVGKTELARALAESMFGEDDAMIRVDMSEFMEKHAVSRLVGAPPGYVGHDDG 599
Query: 721 GLLTEAIRRRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSN 780
G LTE +RR+P++++L DEIEKAHPD+FNILLQV +DGHLTD+ GR V F+N +I+MTSN
Sbjct: 600 GQLTEKVRRKPYSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGRTVDFRNTVIIMTSN 659
Query: 781 VGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEK 840
VG+ + R G +E + Y ++ +++ELK FRPE LNR+D+++VF L K
Sbjct: 660 VGAQELQDQRFAGFGGA---SEGSDYETVRKTMMKELKNSFRPEFLNRVDDIIVFHKLTK 716
Query: 841 AQVCQL 846
++ ++
Sbjct: 717 DELKEI 722
>sp|Q49V34|CLPC_STAS1 ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus saprophyticus subsp. saprophyticus
(strain ATCC 15305 / DSM 20229) GN=clpC PE=3 SV=1
Length = 820
Score = 615 bits (1585), Expect = e-175, Method: Compositional matrix adjust.
Identities = 330/773 (42%), Positives = 469/773 (60%), Gaps = 59/773 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+F R TERA + + +Q EA L + T+HLLLGL+ E P G A +
Sbjct: 2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKE---PEGI---------AAKV 49
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
+ + + + G + ++ K+V E +++ +R +NF+ EHI
Sbjct: 50 LETFEITEEKVVEEVEKLIGHGQEQMGALHYTPRAKKVIELSMDEARKLHHNFVGTEHIL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL ++G A RV L +++ A V L P ++ + + S T
Sbjct: 110 LGLIRENEGVAARVFANLDLNITKARAQVVKALGS--------PEMSNKNAQANKSNNTP 161
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
L S R DLT A + +DPVIGR+ EI R+I++L RRTKNNP+L+GE
Sbjct: 162 TLDSLAR-----------DLTVIAKDGTLDPVIGRDKEITRVIEVLSRRTKNNPVLIGEP 210
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA IV EVP L KR+MSLDMG ++AG K RGE E R+ ++ EI +
Sbjct: 211 GVGKTAIAEGLAQAIVNNEVPETLKGKRVMSLDMGTVVAGTKYRGEFEERLKKVMEEIHQ 270
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+G+VILFIDE+HTL+G+G G +G +D SN+LKP+L RGELQCI +TT DE+R E
Sbjct: 271 AGNVILFIDELHTLVGAG----GAEG-AIDASNILKPALARGELQCIGATTLDEYRKNIE 325
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQPV + EP+ ED + IL GLR++YEAHH + EA+ +A LS RY+SDR
Sbjct: 326 KDAALERRFQPVQVDEPTVEDTIEILKGLRDRYEAHHRINISDEALVSAAKLSHRYVSDR 385
Query: 501 YLPDKAIDLVDEAGSRAHIELFK-----RKKEQQTCILSKPPDD--YWQEIRTVQAMHEV 553
+LPDKAIDL+DEA S+ ++ ++ EQQ + D + QE + +
Sbjct: 386 FLPDKAIDLIDEASSKVRLKSHTTPPNLKEIEQQIEQVKNEKDAAVHAQEFENAANLRDK 445
Query: 554 VQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+Y++ + +T + + + +DI V + W+GIP+ +I
Sbjct: 446 QTKLEKQYEEANTNWKNTQ-------------NGDNTSLSEEDIGEVIAGWTGIPLTKIN 492
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
E L+ LE+ L RVIGQ +AV +IS+AV+R+R GLKDP RP + +F GPTGVGKT
Sbjct: 493 ETESDRLLNLEDTLHNRVIGQKDAVTSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKT 552
Query: 674 ELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRRRPFT 733
ELA++LA FG + +M+R+DMSE+ME+H VS+L+G+PPGYVG+++GG LTE +RR+P++
Sbjct: 553 ELARALAESMFGEDDAMIRVDMSEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVRRKPYS 612
Query: 734 LLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKGRHGS 793
++L DEIEKAHPD+FNILLQV +DGHLTD+ GRRV F+N +I+MTSNVG+ + R
Sbjct: 613 VILFDEIEKAHPDVFNILLQVLDDGHLTDTKGRRVDFRNTVIIMTSNVGAQELQDQRFAG 672
Query: 794 IGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQL 846
G E Y ++ +++ELK FRPE LNR+D+++VF L K ++ Q+
Sbjct: 673 FGGA---TEGQDYESIRKTMMKELKNAFRPEFLNRVDDIIVFHKLSKDELKQI 722
>sp|P24428|CLPC_MYCLE Probable ATP-dependent Clp protease ATP-binding subunit
OS=Mycobacterium leprae (strain TN) GN=clpC PE=3 SV=2
Length = 848
Score = 603 bits (1554), Expect = e-171, Method: Compositional matrix adjust.
Identities = 330/773 (42%), Positives = 474/773 (61%), Gaps = 50/773 (6%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDR--HPNGFLESGITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKSLDSLGISLEAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V +D QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 SQV------------EDIIGQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG ++ + + L G KE E E+
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGAELTRVRQQVIQLLSGYQGKEAAEAGTGGRGGESGSPST 167
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ L +QF +LTA A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 168 SLVL-----------DQFGRNLTAAAMESKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 216
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV EVP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 217 EPGVGKTAVVEGLAQAIVHGEVPETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEI 276
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 277 NTRGDIILFIDELHTLVGAGAAE-----GAIDAASILKPKLARGELQTIGATTLDEYRKY 331
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + EP+ E + IL GLR++YEAHH T A+ AA L+ RYI+
Sbjct: 332 IEKDAALERRFQPVQVGEPTVEHTIEILKGLRDRYEAHHRVSITDSAMVAAATLADRYIN 391
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAG+R I ++ PPD + + +A E
Sbjct: 392 DRFLPDKAIDLIDEAGARMRIRR-----------MTAPPDLREFDEKIAEARREKESAID 440
Query: 559 LKYDDVVASMGDTSEIVVESSLPS-----ASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + AS+ D + +V + D D A V + IA V W+GIPV ++T
Sbjct: 441 AQDFEKAASLRDREKQLVAQRAEREKQWRSGDLDVIAEVDDEQIAEVLGNWTGIPVFKLT 500
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
E L+ +EE+L KR+IGQ++AV A+S+A++R+R GLKDP RP+ + +F GP+GVGKT
Sbjct: 501 EAETTRLLRMEEELHKRIIGQEDAVKAVSKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKT 560
Query: 674 ELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRRRPFT 733
EL+K+LA FG + +++++DM E+ +R T S+L G+PPGYVGYEEGG LTE +RR+PF+
Sbjct: 561 ELSKALANFLFGDDDALIQIDMGEFHDRFTASRLFGAPPGYVGYEEGGQLTEKVRRKPFS 620
Query: 734 LLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKGRHGS 793
++L DEIEKAH +I+N LLQV EDG LTD GR V FKN +++ TSN+G++ I+K
Sbjct: 621 VVLFDEIEKAHQEIYNSLLQVLEDGRLTDGQGRTVDFKNTVLIFTSNLGTSDISKPV--G 678
Query: 794 IGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQL 846
+GF E+ Y MK V +ELK +FRPE LNRID+++VF L + ++ ++
Sbjct: 679 LGFTQGSGEN-DYERMKQKVNDELKKHFRPEFLNRIDDIIVFHQLSRDEIIRM 730
>sp|P0A522|CLPC_MYCTU Probable ATP-dependent Clp protease ATP-binding subunit
OS=Mycobacterium tuberculosis GN=clpC PE=1 SV=1
Length = 848
Score = 592 bits (1527), Expect = e-168, Method: Compositional matrix adjust.
Identities = 333/773 (43%), Positives = 476/773 (61%), Gaps = 50/773 (6%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKSLESLGISLEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 SQVEEI------------IGQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG ++ + + L G KE E E+
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGAELTRVRQQVIQLLSGYQGKEAAEAGTGGRGGESGSPST 167
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ L +QF +LTA A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 168 SLVL-----------DQFGRNLTAAAMEGKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 216
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV EVP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 217 EPGVGKTAVVEGLAQAIVHGEVPETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEI 276
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 277 NTRGDIILFIDELHTLVGAGAAE-----GAIDAASILKPKLARGELQTIGATTLDEYRKY 331
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + EP+ E + IL GLR++YEAHH T A+ AA L+ RYI+
Sbjct: 332 IEKDAALERRFQPVQVGEPTVEHTIEILKGLRDRYEAHHRVSITDAAMVAAATLADRYIN 391
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAG+R I ++ PPD + + +A E
Sbjct: 392 DRFLPDKAIDLIDEAGARMRIRR-----------MTAPPDLREFDEKIAEARREKESAID 440
Query: 559 LKYDDVVASMGDTSEIVVESSLPS-----ASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + AS+ D + +V + D D A V + IA V W+GIPV ++T
Sbjct: 441 AQDFEKAASLRDREKTLVAQRAEREKQWRSGDLDVVAEVDDEQIAEVLGNWTGIPVFKLT 500
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
E L+ +EE+L KR+IGQ++AV A+S+A++R+R GLKDP RP+ + +F GP+GVGKT
Sbjct: 501 EAETTRLLRMEEELHKRIIGQEDAVKAVSKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKT 560
Query: 674 ELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRRRPFT 733
EL+K+LA FG + +++++DM E+ +R T S+L G+PPGYVGYEEGG LTE +RR+PF+
Sbjct: 561 ELSKALANFLFGDDDALIQIDMGEFHDRFTASRLFGAPPGYVGYEEGGQLTEKVRRKPFS 620
Query: 734 LLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKGRHGS 793
++L DEIEKAH +I+N LLQV EDG LTD GR V FKN +++ TSN+G++ I+K
Sbjct: 621 VVLFDEIEKAHQEIYNSLLQVLEDGRLTDGQGRTVDFKNTVLIFTSNLGTSDISK--PVG 678
Query: 794 IGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQL 846
+GF E+ Y MK V +ELK +FRPE LNRID+++VF L + ++ ++
Sbjct: 679 LGFSKGGGEN-DYERMKQKVNDELKKHFRPEFLNRIDDIIVFHQLTREEIIRM 730
>sp|P0A523|CLPC_MYCBO Probable ATP-dependent Clp protease ATP-binding subunit
OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
GN=clpC PE=3 SV=1
Length = 848
Score = 592 bits (1527), Expect = e-168, Method: Compositional matrix adjust.
Identities = 333/773 (43%), Positives = 476/773 (61%), Gaps = 50/773 (6%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKSLESLGISLEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 SQVEEI------------IGQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG ++ + + L G KE E E+
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGAELTRVRQQVIQLLSGYQGKEAAEAGTGGRGGESGSPST 167
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ L +QF +LTA A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 168 SLVL-----------DQFGRNLTAAAMEGKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 216
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV EVP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 217 EPGVGKTAVVEGLAQAIVHGEVPETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEI 276
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 277 NTRGDIILFIDELHTLVGAGAAE-----GAIDAASILKPKLARGELQTIGATTLDEYRKY 331
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + EP+ E + IL GLR++YEAHH T A+ AA L+ RYI+
Sbjct: 332 IEKDAALERRFQPVQVGEPTVEHTIEILKGLRDRYEAHHRVSITDAAMVAAATLADRYIN 391
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAG+R I ++ PPD + + +A E
Sbjct: 392 DRFLPDKAIDLIDEAGARMRIRR-----------MTAPPDLREFDEKIAEARREKESAID 440
Query: 559 LKYDDVVASMGDTSEIVVESSLPS-----ASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + AS+ D + +V + D D A V + IA V W+GIPV ++T
Sbjct: 441 AQDFEKAASLRDREKTLVAQRAEREKQWRSGDLDVVAEVDDEQIAEVLGNWTGIPVFKLT 500
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
E L+ +EE+L KR+IGQ++AV A+S+A++R+R GLKDP RP+ + +F GP+GVGKT
Sbjct: 501 EAETTRLLRMEEELHKRIIGQEDAVKAVSKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKT 560
Query: 674 ELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRRRPFT 733
EL+K+LA FG + +++++DM E+ +R T S+L G+PPGYVGYEEGG LTE +RR+PF+
Sbjct: 561 ELSKALANFLFGDDDALIQIDMGEFHDRFTASRLFGAPPGYVGYEEGGQLTEKVRRKPFS 620
Query: 734 LLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKGRHGS 793
++L DEIEKAH +I+N LLQV EDG LTD GR V FKN +++ TSN+G++ I+K
Sbjct: 621 VVLFDEIEKAHQEIYNSLLQVLEDGRLTDGQGRTVDFKNTVLIFTSNLGTSDISK--PVG 678
Query: 794 IGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQL 846
+GF E+ Y MK V +ELK +FRPE LNRID+++VF L + ++ ++
Sbjct: 679 LGFSKGGGEN-DYERMKQKVNDELKKHFRPEFLNRIDDIIVFHQLTREEIIRM 730
>sp|P49574|CLPC_ODOSI ATP-dependent Clp protease ATP-binding subunit clpA homolog
OS=Odontella sinensis GN=clpC PE=3 SV=1
Length = 885
Score = 586 bits (1510), Expect = e-166, Method: Compositional matrix adjust.
Identities = 320/798 (40%), Positives = 486/798 (60%), Gaps = 70/798 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG---FLESGITIDKA 137
+FE+FTE A+K ++ SQ EA+ +G + V T+ LLLG+I + RH G + +T+ KA
Sbjct: 1 MFEKFTEGAIKVIMLSQEEARRMGHNFVGTEQLLLGIIGQ-RHGIGARALKKQKVTLKKA 59
Query: 138 REAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPE 197
R ++ + +G F A+++PF+ KRV E AV + G NF+ E
Sbjct: 60 R------------REIELYIGRGTGFV-ASEIPFTPRAKRVLEMAVHEGKDLGQNFVGTE 106
Query: 198 HIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISG 257
HI L L + DG A R L +LGV++ L + + ++ E +E L R + +
Sbjct: 107 HILLALISESDGVAMRTLDKLGVNIPKLRNLILMYIE-----ENQEEIL----RPLTQAE 157
Query: 258 KTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
K + + L+++ +++ A + +DPVIGR+ EI +I++L RR KNNP+L+
Sbjct: 158 KFLLEREKKGSSTPTLDEYSENISKEAVDGKLDPVIGRDKEIHEVIKVLARRRKNNPVLI 217
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
GE GVGKTA+AEGLA I+ + P FL +M+LD+G ++AG K RGE E R+ ++ E
Sbjct: 218 GEPGVGKTAVAEGLAQLIIAEKAPDFLDGNLLMALDLGSILAGTKYRGEFEERIKRIVEE 277
Query: 378 IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
+Q +IL IDE+HTL+G+G +D +N+LKP+L RG+ +CI +TT DE+R
Sbjct: 278 VQNDSAIILVIDEIHTLVGAGAAE-----GAVDAANILKPALARGKFRCIGATTIDEYRK 332
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
E+D AL RRFQPV + EP+ + ILLGLR K+E HH + +A+ A L+ ++I
Sbjct: 333 YIERDPALERRFQPVHVKEPTVGVTIEILLGLRSKFEEHHTLSYHDKAVEQAAILADKFI 392
Query: 498 SDRYLPDKAIDLVDEAGSRAHIE-------LFKRKKEQQTCILSKPPDDYWQEIRTVQAM 550
+DR+LPDKAID++DEAGSR +E + + KE Q + K + + +
Sbjct: 393 ADRFLPDKAIDVLDEAGSRVRLENRRLPRGMKRLLKELQDTLRDKEESIKEHDFDIAKQL 452
Query: 551 --HEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIP 608
HE+ + ++ I+ +L A + + + G D+A V + W+GIP
Sbjct: 453 VDHEMEVRTHIRIM--------KQSILTNETLGLARKEIDTVLEG--DVAEVIAGWTGIP 502
Query: 609 VQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPT 668
V +I+ E L+ +EE L +R+IGQ A+ ++S+A++R+RVGL++P+RP A+ +F GPT
Sbjct: 503 VNKISDSESKRLLTMEETLHERLIGQHHAIVSVSKAIRRARVGLRNPDRPIASFIFAGPT 562
Query: 669 GVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIR 728
GVGKTEL K+L+ FG+E SM+RLDMSEYME+HTV+KLIGSPPGYVGY EGG LTEA++
Sbjct: 563 GVGKTELTKALSEYMFGNEDSMIRLDMSEYMEKHTVAKLIGSPPGYVGYNEGGQLTEAVQ 622
Query: 729 RRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIA- 787
+P++++LLDE+EKAHPD+FN+LLQ+ +DG LTDS GR + F+N +I+MT+N+G+ I
Sbjct: 623 TKPYSVVLLDEVEKAHPDVFNLLLQILDDGRLTDSKGRTIDFRNTMIIMTTNLGAKIIEK 682
Query: 788 ------KGRHGSIGFLLEDN-------------ESTSYAGMKTLVVEELKAYFRPELLNR 828
K + F ++++ +S + + LV EELK +FRPE LNR
Sbjct: 683 ESGIKPKTKQDKPAFRIDESGCLGWEPTPEPIKDSALFEKVTELVNEELKEFFRPEFLNR 742
Query: 829 IDEVVVFRSLEKAQVCQL 846
IDE++VF L K + ++
Sbjct: 743 IDEIIVFNHLTKYDIWEI 760
>sp|Q9A9T4|CLPB_CAUCR Chaperone protein ClpB OS=Caulobacter crescentus (strain ATCC 19089
/ CB15) GN=clpB PE=3 SV=1
Length = 859
Score = 575 bits (1482), Expect = e-163, Method: Compositional matrix adjust.
Identities = 347/813 (42%), Positives = 479/813 (58%), Gaps = 109/813 (13%)
Query: 85 FTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAE-DRHPNGFLES-GITIDKAREAVV 142
+++RA +AV +Q A + G +H+L L+ E D ++S G D+ V
Sbjct: 6 YSDRAKQAVQSAQSLALARGHQQFAPEHILKVLLEEKDGLSRALIQSAGGRPDQLDGGVE 65
Query: 143 SIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALG 202
++ T D + ++ T RVF A + +++ G F+ E + +
Sbjct: 66 TLLAKTPRVD-----------GAGGQLYMKPDTARVFAEAEKSAKAAGDAFVTTERLLIA 114
Query: 203 LFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTAAL 262
+ + G A ++ K GV L A + +G A N+ G
Sbjct: 115 I-AKEGGEAAKLFKEAGVSAQSLETAANAMRKGRTADSA-----------NAEEGY---- 158
Query: 263 KSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGV 322
AL+++ DLTA A + +DPVIGR+ EI+R IQ+L RRTKNNP+L+GE GV
Sbjct: 159 --------EALKRYARDLTAAARDGKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGV 210
Query: 323 GKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKS- 381
GKTAI EGLA+RIV +VP L K+++SLDMG L+AGAK RGE E R+ ++ E+ +
Sbjct: 211 GKTAIVEGLALRIVNGDVPESLKDKKLLSLDMGSLIAGAKYRGEFEERLKAVLGEVTAAE 270
Query: 382 GDVILFIDEVHTLIGSGTVGRGNKGTG-LDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
G +ILFIDE+HTL+G+G KG G +D SNLLKP+L RGEL C+ +TT DE+R E
Sbjct: 271 GSIILFIDEMHTLVGAG------KGDGAMDASNLLKPALARGELHCVGATTLDEYRKHVE 324
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD ALARRFQPV +SEP+ ED V IL GL+EKYE HH + + AI AA LS RYI+DR
Sbjct: 325 KDAALARRFQPVFVSEPTVEDTVSILRGLKEKYEVHHGVRISDSAIVAAATLSNRYIADR 384
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTC------------ILSKPPD--------DY 540
+LPDKAIDLVDEA SR +++ + +E LSK D +
Sbjct: 385 FLPDKAIDLVDEASSRVRMQIDSKPEELDEIDRRLVQLKIEREALSKETDAASKQRLENL 444
Query: 541 WQEIRTVQ-----------AMHEVVQGS--------RLKYDDVVAS-MGDTS-------- 572
EI +Q A E V G+ RL+ D A GD +
Sbjct: 445 EVEIDDLQFRSDEMTARWKAEKEKVGGAAQAREALDRLRADLANAQRAGDFARAGQIQYG 504
Query: 573 EI-VVESSLPSASDDD----EPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQL 627
EI +E L A D P VV + IAAV S W+G+PV+++ ER L+ +E++L
Sbjct: 505 EIPALERRLAEAEAGDTQALTPEVVDAEQIAAVVSRWTGVPVEKMLEGEREKLLKMEDEL 564
Query: 628 KKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSE 687
+ RV+GQDEA+ A+S AV+R+R GL+DP++P + LF GPTGVGKTEL KSLA F E
Sbjct: 565 RGRVVGQDEALEAVSDAVRRARAGLQDPSKPIGSFLFLGPTGVGKTELTKSLAEFLFADE 624
Query: 688 SSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRRRPFTLLLLDEIEKAHPDI 747
+++ R+DMSEYME+H+VS+LIG+PPGYVGY+EGG LTEAIRRRP+ ++L DEIEKAHPD+
Sbjct: 625 AAITRMDMSEYMEKHSVSRLIGAPPGYVGYDEGGALTEAIRRRPYQVVLFDEIEKAHPDV 684
Query: 748 FNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYA 807
FN+LLQV +DG LTD GR V F+N LI+MTSN+G+ +A G ED E+
Sbjct: 685 FNVLLQVLDDGRLTDGQGRTVDFRNTLIIMTSNLGAEYLASQEDG------EDVEA---- 734
Query: 808 GMKTLVVEELKAYFRPELLNRIDEVVVFRSLEK 840
++ +V+ ++ +FRPE LNRIDE+++F+ L +
Sbjct: 735 -VRPMVMNTVRGHFRPEFLNRIDEIILFKRLSR 766
>sp|O87444|CLPB_PLEBO Chaperone protein ClpB OS=Plectonema boryanum GN=clpB PE=2 SV=2
Length = 873
Score = 573 bits (1477), Expect = e-162, Method: Compositional matrix adjust.
Identities = 342/830 (41%), Positives = 475/830 (57%), Gaps = 120/830 (14%)
Query: 83 ERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHP-NGFLESGITIDKAREAV 141
E+FTE+ +A+ +Q K + + T+HL+ L+ +D + F + + +D+ R+
Sbjct: 7 EKFTEKVWEAIYRTQEMYKQAQQQQIETEHLMKALLEQDGLAISIFNKLAVPVDRVRDR- 65
Query: 142 VSIWHSTNNQDTDD-AAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
TDD Q K S + + + A EY + +FI+ EH+
Sbjct: 66 -----------TDDFIRRQPKVSGSGTSVYWGRRADALLXRAEEYRKQFEDSFISIEHLL 114
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRE--NSISGK 258
LG + D SR L E R P AK +R + G
Sbjct: 115 LG-YAQD-----------------------SRFGKALLSEFRYPDEAK-LRNAIEQVRGN 149
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ +LE++ DLT A E +DPVIGR+ EI+R IQIL RRTKNNP+L+G
Sbjct: 150 QKVTDQTPENKYESLEKYGRDLTQYAREGKLDPVIGRDDEIRRTIQILSRRTKNNPVLIG 209
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI+ +VP L +++++LDMG L+AGAK RGE E R+ ++ E+
Sbjct: 210 EPGVGKTAIAEGLAQRILSGDVPQSLKDRKLIALDMGALIAGAKYRGEFEERLKAVLKEV 269
Query: 379 QKS-GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
S G++ILFIDE+HT++G+G +G +D NLLKP L RGEL+CI +TT DE+R
Sbjct: 270 TDSRGNIILFIDEIHTVVGAG----ATQG-AMDAGNLLKPMLARGELRCIGATTLDEYRK 324
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
EKD AL RRFQ V + +PS ED + IL GL+E+YE HH K + A+ AA LS RYI
Sbjct: 325 YIEKDAALERRFQQVFVDQPSVEDTISILRGLKERYEVHHGVKISDSALVAAATLSTRYI 384
Query: 498 SDRYLPDKAIDLVDEA--------------------------------------GSRAHI 519
SDR+LP KAIDLVDEA GSR +
Sbjct: 385 SDRFLPSKAIDLVDEAAAKLKMEITSKPEELDEVDRKVLQLEMERLSLQKENDAGSRDRL 444
Query: 520 ELFKRK----KEQQTCI----------------LSKPPDDYWQEIRTVQAMHEVVQGSRL 559
E +R+ KE Q+ + L + D EI+ + +++ + + L
Sbjct: 445 ERLERELADFKEDQSKLNAQWQAEKSVITDLQKLKEEIDRVNLEIQQAERDYDLNRAAEL 504
Query: 560 KYDDVVASMGDTSEIVVESSLPSASDDDEPAV---VGPDDIAAVASLWSGIPVQQITADE 616
KY + E ES L + V DIA + S W+GIPV ++ E
Sbjct: 505 KYGKLNELNRKVEE--TESQLSQIQKSGATLLREEVLESDIAEIISKWTGIPVSKLVESE 562
Query: 617 RMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELA 676
L+ L++ L +RVIGQDEAV A+S A++RSR GL DPNRPTA+ +F GPTGVGKTELA
Sbjct: 563 MQKLLQLDDVLHQRVIGQDEAVTAVSDAIQRSRAGLSDPNRPTASFIFLGPTGVGKTELA 622
Query: 677 KSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRRRPFTLLL 736
K+LAA F +E +M+R+DMSEYME+H+VS+LIG+PPGYVGYEEGG LTEA+RRRP++++L
Sbjct: 623 KALAAFLFDTEEAMVRIDMSEYMEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVIL 682
Query: 737 LDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKGRHGSIGF 796
DEIEKAHPD+FN++LQ+ +DG +TDS GR V FKN +I+MTSN+GS I + +G
Sbjct: 683 FDEIEKAHPDVFNVMLQILDDGRVTDSQGRTVDFKNTIIIMTSNIGSQYIFE--YG---- 736
Query: 797 LLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQL 846
+ Y + + V+E + + FRPE LNRIDE+++F SL+KAQ+ ++
Sbjct: 737 ----GDDDRYEEILSRVMEAMLSNFRPEFLNRIDEIIIFHSLQKAQLREI 782
>sp|Q9LF37|CLPB3_ARATH Chaperone protein ClpB3, chloroplastic OS=Arabidopsis thaliana
GN=CLPB3 PE=1 SV=1
Length = 968
Score = 570 bits (1468), Expect = e-161, Method: Compositional matrix adjust.
Identities = 331/830 (39%), Positives = 472/830 (56%), Gaps = 117/830 (14%)
Query: 83 ERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-----FLESGITIDKA 137
+ FTE A ++++ S AK + +V T+HL+ L+ + NG F + G+ K
Sbjct: 80 QEFTEMAWQSIVSSPDVAKENKQQIVETEHLMKALLEQ---KNGLARRIFSKIGVDNTKV 136
Query: 138 REAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPE 197
EA Q K + AA + +F+ A ++ + ++++ E
Sbjct: 137 LEATEKFIQR-----------QPKVYGDAAGSMLGRDLEALFQRARQFKKDLKDSYVSVE 185
Query: 198 HIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISG 257
H+ L DD G+ L +S E SL + SI G
Sbjct: 186 HLVLAF--ADDKRFGKQL---------FKDFQIS-----------ERSLKSAI--ESIRG 221
Query: 258 KTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
K + + + ALE++ DLTA A E +DPVIGR+ EI+R IQIL RRTKNNP+L+
Sbjct: 222 KQSVIDQDPEGKYEALEKYGKDLTAMAREGKLDPVIGRDDEIRRCIQILSRRTKNNPVLI 281
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
GE GVGKTAI+EGLA RIVQ +VP L++++++SLDMG L+AGAK RGE E R+ ++ E
Sbjct: 282 GEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKE 341
Query: 378 IQKS-GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHR 436
+ S G +ILFIDE+HT++G+G +D NLLKP LGRGEL+CI +TT DE+R
Sbjct: 342 VTDSEGQIILFIDEIHTVVGAGAT-----NGAMDAGNLLKPMLGRGELRCIGATTLDEYR 396
Query: 437 TQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496
EKD AL RRFQ V + +P+ ED + IL GLRE+YE HH + + A+ A LS RY
Sbjct: 397 KYIEKDPALERRFQQVYVDQPTVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRY 456
Query: 497 ISDRYLPDKAIDLVDEAGSRAHIELFKR------------KKEQQTCILSKPPD------ 538
IS R+LPDKAIDLVDEA ++ +E+ + K E + L+ D
Sbjct: 457 ISGRFLPDKAIDLVDEAAAKLKMEITSKPTALDELDRSVIKLEMERLSLTNDTDKASRER 516
Query: 539 -------------------DYWQ---------------------EIRTVQAMHEVVQGSR 558
+ W+ EI+ + +++ + +
Sbjct: 517 LNRIETELVLLKEKQAELTEQWEHERSVMSRLQSIKEEIDRVNLEIQQAEREYDLNRAAE 576
Query: 559 LKYDDV--VASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADE 616
LKY + + + +E + L S V+G DIA + S W+GIPV ++ E
Sbjct: 577 LKYGSLNSLQRQLNEAEKELNEYLSSGKSMFREEVLGS-DIAEIVSKWTGIPVSKLQQSE 635
Query: 617 RMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELA 676
R L+ LEE+L KRV+GQ+ AV A++ A++RSR GL DP RP A+ +F GPTGVGKTELA
Sbjct: 636 RDKLLHLEEELHKRVVGQNPAVTAVAEAIQRSRAGLSDPGRPIASFMFMGPTGVGKTELA 695
Query: 677 KSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRRRPFTLLL 736
K+LA+ F +E +++R+DMSEYME+H VS+LIG+PPGYVGYEEGG LTE +RRRP++++L
Sbjct: 696 KALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTETVRRRPYSVIL 755
Query: 737 LDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKGRHGSIGF 796
DEIEKAH D+FN+ LQ+ +DG +TDS GR VSF N +I+MTSNVGS I
Sbjct: 756 FDEIEKAHGDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQFILNNTD----- 810
Query: 797 LLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQL 846
+D SY +K V+ ++ FRPE +NR+DE +VF+ L++ Q+ ++
Sbjct: 811 --DDANELSYETIKERVMNAARSIFRPEFMNRVDEYIVFKPLDREQINRI 858
>sp|Q7V8B1|CLPB_PROMM Chaperone protein ClpB OS=Prochlorococcus marinus (strain MIT 9313)
GN=clpB PE=3 SV=1
Length = 865
Score = 570 bits (1468), Expect = e-161, Method: Compositional matrix adjust.
Identities = 334/838 (39%), Positives = 491/838 (58%), Gaps = 136/838 (16%)
Query: 83 ERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLE-SGITIDKAREAV 141
++FTE+ A++ +Q+ A+ + T+HLLL L+ ++ LE +G++I + AV
Sbjct: 6 DQFTEKGWAAIVLAQQLAQQRKHQQLETEHLLLSLLQQNALAGRILEKAGVSIGNLQTAV 65
Query: 142 VSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSI----STKRVFEAAVEYSRSRGYNFIAPE 197
+A Q +P AA P S+ + + A ++ ++ G +FI+ E
Sbjct: 66 -------------EAHLQEQPTMQAA--PDSVYLGKGVNDLLDQAEKHKQAFGDSFISIE 110
Query: 198 HIALGLFTVDDGSAGR-VLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSIS 256
H+ L L D GR +L + GVD L VA+ ++G + P +G E
Sbjct: 111 HLLLAL--AGDNRCGRKLLNQAGVDAGKLK-VAIDAVRGNQKVTDQNP---EGTYE---- 160
Query: 257 GKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPIL 316
+LE++ DL+A A E +DPVIGR+ EI+R IQIL RRTKNNP+L
Sbjct: 161 ---------------SLEKYGRDLSAAAREGKLDPVIGRDDEIRRTIQILSRRTKNNPVL 205
Query: 317 LGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLIS 376
+GE GVGKTAI EGLA RIV +VP L ++++++LDMG L+AGAK RGE E R+ ++
Sbjct: 206 IGEPGVGKTAIVEGLAQRIVNGDVPAALQNRQLITLDMGALIAGAKYRGEFEERLKAVLK 265
Query: 377 EIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEH 435
E+ S G ++LFIDE+HT++G+G G +D SNLLKP L RGEL+CI +TT DEH
Sbjct: 266 EVTASEGQIVLFIDEIHTVVGAGATG-----GAMDASNLLKPMLARGELRCIGATTLDEH 320
Query: 436 RTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495
R EKD AL RRFQ VL+ +P+ +D + IL GL+E+YE HH + A+ AA LS+R
Sbjct: 321 RQHIEKDPALERRFQQVLVDQPTVQDTISILRGLKERYEVHHGVRIADNALVAAAVLSSR 380
Query: 496 YISDRYLPDKAIDLVDEAG--------------------------------------SRA 517
YI+DR+LPDKAIDL+DE+ S+
Sbjct: 381 YIADRFLPDKAIDLMDESAARLKMEITSKPEEIDEIDRKIVQLEMEKLSLGRESDSVSKE 440
Query: 518 HIELFKRK----KEQQTCILSKPPDDYWQ--------------EIRTVQAM-------HE 552
+E +R+ EQQ+ + ++ WQ EI VQ ++
Sbjct: 441 RLEKLERELAELAEQQSALNAQ-----WQQEKGAIDDLSSLKEEIERVQLQVEQAKRSYD 495
Query: 553 VVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAV----VGPDDIAAVASLWSGIP 608
+ + + L+Y + SE E++L + + ++ V DDIA V + W+GIP
Sbjct: 496 LNKAAELEYGTLAGLQKQLSE--KETALAQDGEAGDKSLLREEVTEDDIADVIAKWTGIP 553
Query: 609 VQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPT 668
V ++ E L+GLE +L +RVIGQ++AV A++ A++RSR GL DPNRP A+ LF GPT
Sbjct: 554 VAKLVQSEMEKLLGLEAELHQRVIGQEQAVQAVADAIQRSRAGLSDPNRPIASFLFLGPT 613
Query: 669 GVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIR 728
GVGKTEL+K+LA+ F SE++++R+DMSEYME+H+VS+LIG+PPGYVGYE GG LTEA+R
Sbjct: 614 GVGKTELSKALASQLFDSEAALVRIDMSEYMEKHSVSRLIGAPPGYVGYEAGGQLTEAVR 673
Query: 729 RRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAK 788
RRP+ ++L DE+EKAH D+FN++LQ+ +DG +TD GR V F N ++++TSN+GS +I
Sbjct: 674 RRPYAVILFDEVEKAHQDVFNVMLQILDDGRVTDGQGRTVDFTNTVLILTSNIGSQSIL- 732
Query: 789 GRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQL 846
+G + + Y M+ V + L A+FRPE LNR+DE ++F SL + ++ Q+
Sbjct: 733 ----DLG-----GDDSQYREMERRVHDALHAHFRPEFLNRLDETIIFHSLRREELRQI 781
>sp|Q54316|HLYB_TREHY Hemolysin B OS=Treponema hyodysenteriae GN=tlyB PE=3 SV=1
Length = 828
Score = 569 bits (1466), Expect = e-161, Method: Compositional matrix adjust.
Identities = 324/759 (42%), Positives = 474/759 (62%), Gaps = 42/759 (5%)
Query: 85 FTERAVKAV-IFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAVVS 143
T +A K + +++Q EAK L DMV +H+LLGL+ E + + ID R +
Sbjct: 6 LTSKAKKVIELYAQEEAKRLNHDMVTPEHILLGLLYESEALATRVLMRLKIDLDRLKL-- 63
Query: 144 IWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGL 203
+ + A + +P + +++ + E +R+ +N+I EH+ LGL
Sbjct: 64 --------ELESAMVKSSTTKVFGTLPTAPRVQKLISRSAEEARALSHNYIGTEHLLLGL 115
Query: 204 FTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISG--KTAA 261
+ G+A VL +G+++ L + L GV ++IS +T+
Sbjct: 116 LREESGTAYNVLTSMGLELTILRQEILKML---------------GVAGSNISSMEQTSQ 160
Query: 262 LKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESG 321
+ + + L+QF DLT A ++ +D VIGRE E+ R++QIL RR KNNPILLGE G
Sbjct: 161 EDNVKKVKTPTLDQFARDLTKMARDKALDRVIGRENEVMRVVQILSRRKKNNPILLGEPG 220
Query: 322 VGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKS 381
VGKTAI EGLA +IV A+VP LL KR+++LD+ ++AG K RGE E R+ ++ EI+K+
Sbjct: 221 VGKTAIVEGLAEKIVAADVPDILLKKRVLTLDLSSVVAGTKYRGEFEERIKNIVLEIKKA 280
Query: 382 GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEK 441
++I+FIDE+HTLIG+G G +G LD +N+LKP+L RGE+QCI +TT +E++ EK
Sbjct: 281 SNIIIFIDELHTLIGAG----GAEG-ALDAANMLKPALSRGEIQCIGATTINEYKKYIEK 335
Query: 442 DKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRY 501
D AL RRFQP+ + EPS ED + IL G++ KYE HH K+T EAINAA LS RYI +R+
Sbjct: 336 DGALVRRFQPINVEEPSIEDTIEILNGIKGKYEEHHKVKYTDEAINAAAVLSKRYIFERH 395
Query: 502 LPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLKY 561
LPDKAIDL+DEAGSRA L + Q+ L K ++ Q+ + V ++++
Sbjct: 396 LPDKAIDLIDEAGSRAR--LLNMTRPQEFKDLEKKIEELNQQKKRVVESQNFEDAAKIR- 452
Query: 562 DDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLV 621
D + S+ + E+ + + + DDI V S + IP++++ E L+
Sbjct: 453 -DEITSLQE--ELSKKEEKCREEREKIETFIEEDDIRHVISEITNIPIKRLLNSESKRLI 509
Query: 622 GLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAA 681
G+EE+L ++V+GQ EA+++IS+A++RSR GLK RP + +F GPTGVGKT LAK L+
Sbjct: 510 GMEEELHQKVVGQKEAISSISKAIRRSRAGLKTSKRPLGSFIFLGPTGVGKTALAKVLSE 569
Query: 682 CYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRRRPFTLLLLDEIE 741
FG +++R+DMSE+ME+ VS+LIG+PPGYVGYEEGG LTE +RR+P++L+L DEIE
Sbjct: 570 FMFGDSDALIRIDMSEFMEKFAVSRLIGAPPGYVGYEEGGGLTEKVRRKPYSLILFDEIE 629
Query: 742 KAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDN 801
KAHPD+ NILLQV E+G LTD+ GR+V F N +I++TSN+G+ I KG S+GF +
Sbjct: 630 KAHPDVTNILLQVLEEGQLTDNFGRKVDFSNTIIIITSNLGARDIVKG--SSLGFNAVGS 687
Query: 802 ESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEK 840
E + +K +EELK F PE LNRID+++VF +L K
Sbjct: 688 EKDA-NDIKNFALEELKQNFNPEFLNRIDDIIVFHTLSK 725
>sp|Q9PGC1|CLPB_XYLFA Chaperone protein ClpB OS=Xylella fastidiosa (strain 9a5c) GN=clpB
PE=3 SV=1
Length = 861
Score = 568 bits (1463), Expect = e-161, Method: Compositional matrix adjust.
Identities = 324/730 (44%), Positives = 445/730 (60%), Gaps = 95/730 (13%)
Query: 177 RVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGE 236
R+F + ++ G F+A E L + D G G+ L+ G + + A A+ +L+G
Sbjct: 89 RLFHRTDKLAQQHGDQFMASEWFVLAVVD-DSGGLGQALRAAGAEKKKIEA-AIDKLRG- 145
Query: 237 LAKEGREPSLAKGVRENSISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRE 296
G+T ++ R ALE++ +DLTARA +DPVIGR+
Sbjct: 146 --------------------GETVQTENAEEQR-QALEKYTIDLTARAESGKLDPVIGRD 184
Query: 297 TEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGL 356
EI+R IQ+L RRTKNNP+L+GE GVGKTAI EGLA RIV EVP L SKR++SLD+G
Sbjct: 185 EEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGEVPEGLRSKRLLSLDLGA 244
Query: 357 LMAGAKERGELEARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTG-LDISNL 414
L+AGAK RGE E R+ +++++ K+ G VILFIDE+HT++G+G K G +D N+
Sbjct: 245 LIAGAKFRGEFEERLKGVLNDLAKNEGRVILFIDELHTMVGAG------KADGAMDAGNM 298
Query: 415 LKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYE 474
LKP+L RGEL CI +TT DE+R EKD AL RRFQ V + EP+ ED + IL GL+EKY
Sbjct: 299 LKPALARGELHCIGATTLDEYRKYIEKDAALERRFQKVFVGEPTVEDTIAILRGLKEKYA 358
Query: 475 AHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIE-------------- 520
HH + T AI AA LS RYI+DR LPDKAIDL+DEA SR +E
Sbjct: 359 LHHGVEITDPAIVAAATLSNRYITDRQLPDKAIDLMDEAASRIRMEIDSKPEELDRLERR 418
Query: 521 ---------LFKRKK-----------EQQTCILSKPPDDYWQEIRTVQA-------MHEV 553
+ K++K E+ +L + D + R+ +A + E
Sbjct: 419 LIQLKIQREMLKKEKDEASKQRLADLERDIEVLDREFSDLEEVWRSEKAALQGATKIKES 478
Query: 554 VQGSRLKYDDVV--ASMGDTSEI------VVESSLPSASDDDE------PAVVGPDDIAA 599
++ ++L + SEI +E L +AS ++ V ++IA
Sbjct: 479 IEQAKLDLEAAQRRQDYAKMSEIQYGVLPALEKQLVAASQAEQHDFTLVQEKVTAEEIAE 538
Query: 600 VASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPT 659
V S W+GIPV ++ ER L+ +E L +RV+GQ+EA+ +S AV+RSR GL DPNRP+
Sbjct: 539 VVSRWTGIPVSKMLEGERDKLLRMEADLGRRVVGQEEAIKVVSDAVRRSRTGLSDPNRPS 598
Query: 660 AAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEE 719
+ LF GPTGVGKTEL K+LA F S+ +M+R+DMSE+ME+H+V++LIG+PPGYVGYEE
Sbjct: 599 GSFLFLGPTGVGKTELCKALAEFLFDSQDAMVRIDMSEFMEKHSVARLIGAPPGYVGYEE 658
Query: 720 GGLLTEAIRRRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTS 779
GG LTE +RRRP++L+LLDE+EKAH D+FNILLQV +DG LTD GR V F+N +IVMTS
Sbjct: 659 GGYLTELVRRRPYSLILLDEVEKAHSDVFNILLQVLDDGRLTDGQGRTVDFRNTVIVMTS 718
Query: 780 NVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLE 839
N+GS I + L D+ Y MK V+E ++A+FRPE +NR+D++VVF L+
Sbjct: 719 NLGSHQIQE--------LSGDDSPEVYTQMKAAVMEVVQAHFRPEFINRLDDIVVFHPLD 770
Query: 840 KAQVCQLPLI 849
KAQ+ Q+ I
Sbjct: 771 KAQIKQIARI 780
>sp|Q87AX8|CLPB_XYLFT Chaperone protein ClpB OS=Xylella fastidiosa (strain Temecula1 /
ATCC 700964) GN=clpB PE=3 SV=1
Length = 861
Score = 567 bits (1461), Expect = e-160, Method: Compositional matrix adjust.
Identities = 324/730 (44%), Positives = 444/730 (60%), Gaps = 95/730 (13%)
Query: 177 RVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGE 236
R+F + ++ G F+A E L + D G G+ L+ G + + A A+ +L+G
Sbjct: 89 RLFHRTDKLAQQHGDQFMASEWFVLAVVD-DSGGLGQALRAAGAEKKKIEA-AIDKLRG- 145
Query: 237 LAKEGREPSLAKGVRENSISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRE 296
G+T ++ R ALE++ +DLTARA +DPVIGR+
Sbjct: 146 --------------------GETVQTENAEEQR-QALEKYTIDLTARAESGKLDPVIGRD 184
Query: 297 TEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGL 356
EI+R IQ+L RRTKNNP+L+GE GVGKTAI EGLA RIV EVP L SKR++SLD+G
Sbjct: 185 EEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGEVPEGLRSKRLLSLDLGA 244
Query: 357 LMAGAKERGELEARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTG-LDISNL 414
L+AGAK RGE E R+ +++++ K+ G VILFIDE+HT++G+G K G +D N+
Sbjct: 245 LIAGAKFRGEFEERLKGVLNDLAKNEGRVILFIDELHTMVGAG------KAEGAMDAGNM 298
Query: 415 LKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYE 474
LKP+L RGEL CI +TT DE+R EKD AL RRFQ V + EP+ ED + IL GL+EKY
Sbjct: 299 LKPALARGELHCIGATTLDEYRKYIEKDAALERRFQKVFVGEPTVEDTIAILRGLKEKYA 358
Query: 475 AHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIE-------------- 520
HH + T AI AA LS RYI+DR LPDKAIDL+DEA SR +E
Sbjct: 359 LHHGVEITDPAIVAAATLSNRYITDRQLPDKAIDLMDEAASRIRMEIDSKPEELDRLERR 418
Query: 521 ---------LFKRKK-----------EQQTCILSKPPDDYWQEIRTVQA-------MHEV 553
+ K++K E+ +L + D + R+ +A + E
Sbjct: 419 LIQLKIQREMLKKEKDEASKQRLVDLERDIEVLDREFSDLEEVWRSEKAALQGATKIKES 478
Query: 554 VQGSRLKYDDVV--ASMGDTSEI------VVESSLPSASDDDEPAV------VGPDDIAA 599
++ ++L + SEI +E L +AS ++ V ++IA
Sbjct: 479 IEQAKLDLEAAQRRQDYAKMSEIQYGVLPALEKQLVAASQAEQHDFTLVQEKVTAEEIAE 538
Query: 600 VASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPT 659
V S W+GIPV ++ ER L+ +E L +RV+GQDEA+ +S AV+RSR GL DPNRP+
Sbjct: 539 VVSRWTGIPVSKMLEGERDKLLRMEADLGRRVVGQDEAIKVVSDAVRRSRTGLSDPNRPS 598
Query: 660 AAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEE 719
+ LF GPTGVGKTEL K+LA F S+ +M+R+DMSE+ME+H+V++LIG+PPGYVGYEE
Sbjct: 599 GSFLFLGPTGVGKTELCKALAEFLFDSQDAMVRIDMSEFMEKHSVARLIGAPPGYVGYEE 658
Query: 720 GGLLTEAIRRRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTS 779
GG LTE +RRRP++L+LLDE+EKAH D+FNILLQV +DG LTD GR V F+N +IVMTS
Sbjct: 659 GGYLTELVRRRPYSLILLDEVEKAHSDVFNILLQVLDDGRLTDGQGRTVDFRNTVIVMTS 718
Query: 780 NVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLE 839
N+GS I + L D+ Y MK V+ ++A+FRPE +NR+D++VVF L+
Sbjct: 719 NLGSHQIQE--------LSGDDSPEVYTQMKAAVMGVVQAHFRPEFINRLDDIVVFHPLD 770
Query: 840 KAQVCQLPLI 849
KAQ+ Q+ I
Sbjct: 771 KAQIKQIARI 780
>sp|Q7X2S8|CLPB_MEIRU Chaperone protein ClpB OS=Meiothermus ruber GN=clpB PE=3 SV=1
Length = 854
Score = 567 bits (1460), Expect = e-160, Method: Compositional matrix adjust.
Identities = 306/632 (48%), Positives = 408/632 (64%), Gaps = 73/632 (11%)
Query: 271 SALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEG 330
+ALEQ+ +DLT +A E +DPVIGR+ EI+R+IQIL RRTKNNP+L+GE GVGKTA+ EG
Sbjct: 151 NALEQYGLDLTRQAEEGKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAVVEG 210
Query: 331 LAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE-IQKSGDVILFID 389
LA RIV+ +VP L KRI+SL MG L+AGAK RGE E R+ +I E +Q +G +ILFID
Sbjct: 211 LAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQETVQSAGQIILFID 270
Query: 390 EVHTLIGSGTVGRGNKGTG-LDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARR 448
E+HT++G+G K G +D N+LKP+L RGEL I +TT DE+R + EKD AL RR
Sbjct: 271 EIHTVVGAG------KAEGAVDAGNMLKPALARGELHLIGATTLDEYR-EIEKDPALERR 323
Query: 449 FQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAID 508
FQPV + EPS E+ V IL G++EKYE HH + + A+ AA LS RYI+DR LPDKAID
Sbjct: 324 FQPVFVDEPSLEETVSILRGIKEKYEVHHGVRISDPALIAAAQLSHRYIADRKLPDKAID 383
Query: 509 LVDEAGSRAHIEL---------FKRKKEQ---QTCILSKPPD---------------DYW 541
LVDEA +R + L R+K Q + L K D D
Sbjct: 384 LVDEAAARLRMALESSPESIDALNRRKLQLEIEREALKKETDAESKFRLGELEKEIADLE 443
Query: 542 QEIRTVQAMHEV-------VQGSRLKYDDVVASMGDTSEIV---------------VESS 579
+EIR QA E ++ ++ + D+V + +E
Sbjct: 444 EEIRKQQAEWEAEREIMQKLRAAQQRLDEVRTQIEQAERAYDLNKAAPLRYGELPKLEQE 503
Query: 580 LPSASDDDEPA-----VVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQ 634
+ +D A +V +DIAA+ S W+GIPV ++ ER L+ LE++L KRV+GQ
Sbjct: 504 VNELADRMAGAQFVRPMVTEEDIAAIVSRWTGIPVAKLMEGEREKLLRLEDELHKRVVGQ 563
Query: 635 DEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLD 694
DEA+ A++ A++R+R GLKDPNRP + LF GPTGVGKTELAK+LAA F +E +M+R+D
Sbjct: 564 DEAIVAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAASLFDTEENMVRID 623
Query: 695 MSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRRRPFTLLLLDEIEKAHPDIFNILLQV 754
MSEY E+HTV++LIG+PPGYVGYEEGG LTEA+RRRP++++L DEIEKAHPD+FN+LLQV
Sbjct: 624 MSEYQEKHTVARLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAHPDVFNVLLQV 683
Query: 755 FEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVV 814
+DG LTD GR V F+N +I++TSN+GS I +G SY ++ V
Sbjct: 684 LDDGRLTDGQGRTVDFRNTVIILTSNIGSPLIFEGIQS----------GQSYETIRERVF 733
Query: 815 EELKAYFRPELLNRIDEVVVFRSLEKAQVCQL 846
L+ +FRPE LNR+DE+VVFR L + Q+ +
Sbjct: 734 GVLQQHFRPEFLNRLDEIVVFRPLAREQIAAI 765
>sp|Q7NFE9|CLPB_GLOVI Chaperone protein ClpB OS=Gloeobacter violaceus (strain PCC 7421)
GN=clpB PE=3 SV=1
Length = 872
Score = 566 bits (1458), Expect = e-160, Method: Compositional matrix adjust.
Identities = 335/830 (40%), Positives = 484/830 (58%), Gaps = 122/830 (14%)
Query: 84 RFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG--FLESGITIDKAREAV 141
+FTE+A A++ + AK + + ++HL L+ +D G F ++G+ + K E V
Sbjct: 8 QFTEKAWDAIVRTTEVAKEYRQQQLESEHLFKALLDQDGGLAGSIFTKAGVNLTKLGERV 67
Query: 142 VSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIAL 201
+ Q K + + S + + A + + G +FI+ EH+ L
Sbjct: 68 EQFINR-----------QPKLTNPGQSVYLGRSLDALLDRAEGFRKEYGDDFISIEHLVL 116
Query: 202 GLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTAA 261
F D ++L+ +D L AV V++++G +
Sbjct: 117 A-FAKDVRFGQQILREFSLDEAKLKAV-VAQVRG---------------------NQKVT 153
Query: 262 LKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESG 321
++P T S L+++ DLT A E +DPVIGR+ EI+R IQIL RRTKNNP+L+GE G
Sbjct: 154 SQNPESTYES-LDKYGRDLTQLAREGKLDPVIGRDEEIRRTIQILSRRTKNNPVLIGEPG 212
Query: 322 VGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKS 381
VGKTAIAEGLA RIV +VP L +++++LDMG L+AG+K RGE E R+ +++E+ KS
Sbjct: 213 VGKTAIAEGLAQRIVSGDVPESLQGRKLIALDMGALIAGSKYRGEFEERLKAVLNEVTKS 272
Query: 382 -GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
G ++LFIDE+HT++G+G +G +D NLLKP L RGEL+CI +TT DE+R E
Sbjct: 273 EGQIVLFIDEIHTVVGAG----ATQG-AMDAGNLLKPMLARGELRCIGATTLDEYRKYIE 327
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQ V + +P+ ED + IL GL+E+YE HH + + A+ AA LS RYISDR
Sbjct: 328 KDAALERRFQQVYVDQPTVEDTISILRGLKERYEVHHGVRISDSALVAAAVLSHRYISDR 387
Query: 501 YLPDKAIDLVDE--------------------------------------AGSRAHIELF 522
+LPDKAIDL+DE A SR +E
Sbjct: 388 FLPDKAIDLMDEAAAKLKMEITSKPEALDEVDRKILQLEMERLSLAKESDAASRDRLERL 447
Query: 523 KRK----KEQQTCILSKPPDDYWQE----IRTVQAMHE-------VVQGSRLKYDDVVAS 567
+++ KE+Q + ++ WQ I VQA+ E +Q + YD A+
Sbjct: 448 EKELADLKEEQRSLNAQ-----WQAEKDIIDQVQAVKEEIDQVNVQIQQAERDYDLNRAA 502
Query: 568 ---MGDTSEI-----VVESSLPSASDDDEPAV---VGPDDIAAVASLWSGIPVQQITADE 616
G SE+ + L + V +DIA + S W+GIPV ++ A E
Sbjct: 503 ELKYGKLSELQKRLDAADKQLSETQTSGRSLLREEVTEEDIAEIISKWTGIPVSKLVASE 562
Query: 617 RMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELA 676
R L+ LE++L KRV+GQ+EAV +S A++RSR GL DPNRP A+ +F GPTGVGKTELA
Sbjct: 563 REKLLHLEDELHKRVVGQEEAVRIVSEAIQRSRAGLADPNRPIASFIFLGPTGVGKTELA 622
Query: 677 KSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRRRPFTLLL 736
K+LA+ F E++M+R+DMSEYME+H+VS+LIG+PPGYVGY+EGG LTEA+RRRP+ ++L
Sbjct: 623 KALASFLFDDENAMVRIDMSEYMEKHSVSRLIGAPPGYVGYDEGGQLTEAVRRRPYAVVL 682
Query: 737 LDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKGRHGSIGF 796
DEIEKAH D+FN+LLQV +DG +TDS GR + FKNA+I+MTSN+GS I +
Sbjct: 683 FDEIEKAHNDVFNVLLQVLDDGRITDSQGRTIDFKNAVIIMTSNIGSDAILR-------- 734
Query: 797 LLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQL 846
L N++ Y M+ V+ ++ +FRPE LNR+D++++FR+L + Q+ +
Sbjct: 735 -LGGNDAY-YEQMREEVMRAMQVHFRPEFLNRVDDIIIFRNLRRDQLAAI 782
>sp|Q8DJ40|CLPB1_THEEB Chaperone protein ClpB 1 OS=Thermosynechococcus elongatus (strain
BP-1) GN=clpB1 PE=3 SV=1
Length = 871
Score = 563 bits (1452), Expect = e-159, Method: Compositional matrix adjust.
Identities = 335/831 (40%), Positives = 481/831 (57%), Gaps = 126/831 (15%)
Query: 84 RFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLESGITIDKAREAVV 142
+FTE+A A+ + AK + ++HL+ L+ ++ F ++G ++ + R+
Sbjct: 8 QFTEKAWAAIARTPDLAKQAQHQNLESEHLMKSLLEQEGLATQIFQKAGCSVQRIRDL-- 65
Query: 143 SIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALG 202
TD+ ++ S + + S ++ + A E + G FI+ EH+ L
Sbjct: 66 ----------TDEFISRQPKISHPSGVYLGQSLDKLLDRAEEARKQFGDEFISIEHLVLA 115
Query: 203 LFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTAAL 262
F DD ++ + +G+ L A+ +++G ++ V + + GK AAL
Sbjct: 116 -FAQDDRFGKKLFQDIGLSEKVLRE-AIQQIRG-----------SQKVTDQNPEGKYAAL 162
Query: 263 KSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGV 322
+ GR DLT A + +DPVIGR+ EI+R+IQIL RRTKNNP+L+GE GV
Sbjct: 163 EKYGR-----------DLTLLARQGKLDPVIGRDDEIRRVIQILSRRTKNNPVLIGEPGV 211
Query: 323 GKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKS- 381
GKTAIAEGLA RIV +VP L +++++LDMG L+AGAK RGE E R+ ++ E+ S
Sbjct: 212 GKTAIAEGLAQRIVARDVPDSLRDRQLIALDMGALIAGAKYRGEFEERLKAVLKEVTDSN 271
Query: 382 GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEK 441
G +ILFIDE+HT++G+G +G +D NLLKP L RGEL+CI +TT DE+R EK
Sbjct: 272 GQIILFIDEIHTVVGAG----ATQG-AMDAGNLLKPMLARGELRCIGATTLDEYRKYIEK 326
Query: 442 DKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRY 501
D AL RRFQ V + +PS ED + IL GL+E+YE HH K + A+ AA LSARYISDR+
Sbjct: 327 DAALERRFQQVYVDQPSVEDTISILRGLKERYEIHHGVKISDTALVAAATLSARYISDRF 386
Query: 502 LPDKA---------------------IDLVDE-----------------AGSRAHIELFK 523
LPDKA +D +D A SR +E +
Sbjct: 387 LPDKAIDLVDEAAAKLKMEITSKPEELDEIDRKILQLEMERLSLQKETSAASRDRLEKLE 446
Query: 524 RK----KEQQTCILSKPPDDYWQ---------------------EIRTVQAMHEVVQGSR 558
R+ KE+Q+ + ++ WQ EI+ + +++ + +
Sbjct: 447 RELADLKEEQSRLNAQ-----WQAEKEVIDRLQSIKEEIEKVNIEIQQAERNYDLNRAAE 501
Query: 559 LKYDDVVASMGDTSEIVVESSLPSASDDDEPAV---VGPDDIAAVASLWSGIPVQQITAD 615
LKY + +E E+ L + V DIA + S W+GIPV ++
Sbjct: 502 LKYGKLTELHKKLAE--AEAKLREIQVGGRSLLRDEVTEADIAEIISKWTGIPVSKLVES 559
Query: 616 ERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTEL 675
E L+ LEE+L KRV+GQDEAV+A++ A++RSR GL DPNRP A+ +F GPTGVGKTEL
Sbjct: 560 EAQKLLHLEEELHKRVVGQDEAVSAVAEAIQRSRAGLADPNRPIASFIFLGPTGVGKTEL 619
Query: 676 AKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRRRPFTLL 735
AK+LAA F +E +++R+DMSEYME+H VS+LIG+PPGYVGY+EGG LTEAIRRRP+ ++
Sbjct: 620 AKALAAFMFDTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYDEGGQLTEAIRRRPYAVV 679
Query: 736 LLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKGRHGSIG 795
L DEIEKAHPD+FN+ LQ+ +DG +TDS GR V FKN +I+MTSN+GS I
Sbjct: 680 LFDEIEKAHPDVFNVFLQILDDGRVTDSQGRTVDFKNTIIIMTSNIGSQYI--------- 730
Query: 796 FLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQL 846
L + + Y+ M V+E ++A+FRPE LNR+DE ++F SL K Q+ Q+
Sbjct: 731 -LDVAGDDSRYSEMYNRVMEAMRAHFRPEFLNRVDEFIIFHSLRKDQLRQI 780
>sp|Q889C2|CLPB_PSESM Chaperone protein ClpB OS=Pseudomonas syringae pv. tomato (strain
DC3000) GN=clpB PE=3 SV=1
Length = 854
Score = 562 bits (1448), Expect = e-159, Method: Compositional matrix adjust.
Identities = 322/727 (44%), Positives = 439/727 (60%), Gaps = 104/727 (14%)
Query: 177 RVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGE 236
R+ A ++ +G FI+ E + L ++ G++L GV L A++ L+GE
Sbjct: 89 RLLNQADRLAQQKGDQFISSELVLLAAMD-ENSKLGKLLLGQGVSKKALEN-AINNLRGE 146
Query: 237 LAKEGREPSLAKGVRENSISGKTAALKSPGRTRA-SALEQFCVDLTARASEELIDPVIGR 295
A+ P + AL+++ VDLT RA E +DPVIGR
Sbjct: 147 -----------------------GAVNDPNIEESRQALDKYTVDLTKRAEEGKLDPVIGR 183
Query: 296 ETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMG 355
+ EI+R IQ+L RRTKNNP+L+GE GVGKTAIAEGLA RI+ EVP L KR++SLDMG
Sbjct: 184 DDEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIAEGLAQRIINGEVPDGLRGKRLLSLDMG 243
Query: 356 LLMAGAKERGELEARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTG-LDISN 413
L+AGAK RGE E R+ +L++E+ K G +ILFIDE+HT++G+G KG G +D N
Sbjct: 244 ALIAGAKYRGEFEERLKSLLNELSKQEGQIILFIDELHTMVGAG------KGEGSMDAGN 297
Query: 414 LLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKY 473
+LKP+L RGEL C+ +TT +E+R EKD AL RRFQ VL+ EPS+ED + IL GL+E+Y
Sbjct: 298 MLKPALARGELHCVGATTLNEYRQYIEKDAALERRFQKVLVDEPSEEDTIAILRGLKERY 357
Query: 474 EAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHI------ELFKR--- 524
E HH T AI AA LS RYI+DR LPDKAIDL+DEA SR + E+ R
Sbjct: 358 EVHHKVAITDGAIIAAAKLSHRYITDRQLPDKAIDLIDEAASRIRMEIDSKPEVLDRLER 417
Query: 525 ------------KKEQQTCILSKPP----------------DDYWQ----EIRTVQAMHE 552
KKE+ + + ++ W E+ + +
Sbjct: 418 RLIQLKVEAQALKKEKDEAAIKRLEKLQEEIVRLEKEYADLEEIWTSEKAEVTGSAQIQQ 477
Query: 553 VVQGSRLKYDDVVASMGDTSEIV---------VESSLPSASDDDEP------AVVGPDDI 597
++ SR + + GD + + +E SL +P + V ++I
Sbjct: 478 KIEQSRQELE-AARRRGDLNRMAELQYGIIPDLERSLQMVDQHGKPENQLLRSKVTEEEI 536
Query: 598 AAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNR 657
A V S W+GIPV ++ ER L+ +E L RVIGQ+EAV A+S AV+RSR GL DPNR
Sbjct: 537 AEVVSKWTGIPVSKMLEGEREKLLRMETLLHNRVIGQEEAVVAVSNAVRRSRAGLSDPNR 596
Query: 658 PTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGY 717
P+ + +F GPTGVGKTEL K+LA F +E +M+R+DMSE+ME+H+V++LIG+PPGYVGY
Sbjct: 597 PSGSFMFLGPTGVGKTELCKALAEFLFDTEEAMVRIDMSEFMEKHSVARLIGAPPGYVGY 656
Query: 718 EEGGLLTEAIRRRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVM 777
EEGG LTEA+RR+P++++LLDE+EKAH D+FNILLQV EDG LTDSHGR V F+N +IVM
Sbjct: 657 EEGGYLTEAVRRKPYSVILLDEVEKAHSDVFNILLQVLEDGRLTDSHGRTVDFRNTVIVM 716
Query: 778 TSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRS 837
TSN+GS I + L+ D E+ A V++ + +FRPE +NRIDEVV+F
Sbjct: 717 TSNLGSAQIQE--------LVGDREAQRAA-----VMDAVSTHFRPEFVNRIDEVVIFEP 763
Query: 838 LEKAQVC 844
L + Q+
Sbjct: 764 LARDQIA 770
>sp|Q9RVI3|CLPB_DEIRA Chaperone protein ClpB OS=Deinococcus radiodurans (strain ATCC
13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 /
NCIMB 9279 / R1 / VKM B-1422) GN=clpB PE=3 SV=2
Length = 852
Score = 559 bits (1441), Expect = e-158, Method: Compositional matrix adjust.
Identities = 340/817 (41%), Positives = 475/817 (58%), Gaps = 124/817 (15%)
Query: 83 ERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAVV 142
ERFTE + A+ +Q+ A+ + H+L L+ D +G ++ AR A+
Sbjct: 4 ERFTEASAVAINAAQQLAQENHNQNLTHFHVLRTLLDNDTASRALTLAGGDLNTARAALD 63
Query: 143 SIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALG 202
+ + A K S ++ + R F+ A + G +F+A + + L
Sbjct: 64 A-----------EIAKLPKVQGSDGQLYLDPALNRAFQKADTLAAQLGDSFVAADTLLLA 112
Query: 203 LFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEG--REPSLAKGVRENSISGKTA 260
L +GE G E SL + V E GKT
Sbjct: 113 L------------------------------RGEYRGRGLPDEVSLNRAVTEQR-KGKTV 141
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
K+ + AL ++ DLT RA + DPVIGR+ EI+R++QIL RR+KNNP+L+GE
Sbjct: 142 TNKT-SEQQFDALNKYGTDLTQRARDGKFDPVIGRDEEIRRVMQILLRRSKNNPVLIGEP 200
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA+RIV+ +VP L K+I+SL+MG L+AGAK RGE E R+ +I E+ K
Sbjct: 201 GVGKTAIAEGLAMRIVKGDVPEGLRDKKIVSLEMGSLLAGAKFRGEFEERLKGVIDEVVK 260
Query: 381 S-GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQF 439
S G++ILF+DE+HT++G+G +G+ D N+LKP+L RGEL I +TT DE+R +
Sbjct: 261 SAGEIILFVDEIHTIVGAGKT----EGSP-DAGNMLKPALARGELHLIGATTLDEYR-EI 314
Query: 440 EKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISD 499
EKD AL RRFQPV + EPS ED + IL G++E+Y+ HHN + T A+ AA LS RYI+D
Sbjct: 315 EKDAALERRFQPVFVDEPSVEDTISILRGIKERYQVHHNVEITDPALVAAATLSNRYITD 374
Query: 500 RYLPDKAIDLVDEAGSRAHI-----------------------ELFKRKKE--QQTCILS 534
R LPDKAIDL+DE+ +R + E KR+K+ Q +L
Sbjct: 375 RQLPDKAIDLIDESAARLRMALESSPERIDQLSRRKLQLEIEREALKREKDVDSQNRLLD 434
Query: 535 -----KPPDDYWQEIRT--------VQAMHE--------------------VVQGSRLKY 561
K D E+R+ V A+ E + + +RL+Y
Sbjct: 435 IENQLKTLTDELNEVRSRWEAERGEVAALREKREKLDAVRTQIEKARRDYDLEEAARLEY 494
Query: 562 DDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLV 621
++ A D ++ E L SA + V +DIAAV S W+GIPV ++ ER L+
Sbjct: 495 GELPALEKDVQDL--EKKLKSA--EFAHMEVTEEDIAAVVSRWTGIPVSKLMEGEREKLL 550
Query: 622 GLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAA 681
LEEQL RVIGQD A+ ++S A++R+R GL DPNRP + +F GP+GVGKTELAK+LA
Sbjct: 551 HLEEQLHGRVIGQDRAIVSVSDAIRRARAGLNDPNRPLGSFMFLGPSGVGKTELAKALAE 610
Query: 682 CYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRRRPFTLLLLDEIE 741
F S +M+R+DMSEYME+HTV++LIG+PPGYVG+EEGG LTEA+RRRP+ ++L DEIE
Sbjct: 611 FLFDSSDAMVRIDMSEYMEKHTVARLIGAPPGYVGFEEGGQLTEAVRRRPYAVILFDEIE 670
Query: 742 KAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDN 801
KAHPD+FN+LLQV +DG LTD GR V F+N LI+MTSN+GS I + + ED
Sbjct: 671 KAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTLIIMTSNIGSPLILEMQQRG-----EDA 725
Query: 802 ESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSL 838
E+ +K+ V++EL+ FRPE LNR+D+++VF +L
Sbjct: 726 ET-----IKSAVMDELRGEFRPEFLNRVDDIIVFDAL 757
>sp|Q73IE4|CLPB_WOLPM Chaperone protein ClpB OS=Wolbachia pipientis wMel GN=clpB PE=3
SV=1
Length = 853
Score = 559 bits (1440), Expect = e-158, Method: Compositional matrix adjust.
Identities = 323/821 (39%), Positives = 476/821 (57%), Gaps = 110/821 (13%)
Query: 82 FERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAV 141
+FTE+A + +Q +A G + +HLL ++ ED ESG+ D
Sbjct: 3 LNKFTEKAKSLIQSAQMKALGAGHQIFMPEHLL-KVMLED-------ESGLVQDLINACG 54
Query: 142 VSIWHSTNNQDTDDAAAQGKPF---SSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
++ + D D+A + P + + S +VFE ++ ++ +F+A E
Sbjct: 55 GNVQSIS---DAVDSAIKKLPVIEGPGSGGLQLSREIAKVFEDSIGIAKRNKDSFVAVER 111
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ GL D + G++L GV L +V +G
Sbjct: 112 LLQGLTAQKDDTVGKILAENGVTPQKLNSVVAEMRKG----------------------- 148
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
++A + +A +++ D+T A + +DPVIGR+ EI+R +Q+ RRTKNNP+L+G
Sbjct: 149 SSADSPNSEEKLNAAKKYTKDVTELAMQGKLDPVIGRDEEIRRTMQVSLRRTKNNPVLIG 208
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAI EGLA RIV +VP+ L ++++LD+G L+AG K RGE E R+ +I+E+
Sbjct: 209 EPGVGKTAIVEGLANRIVANDVPLGLHDAKVLALDLGALIAGTKFRGEFEERLKAVINEL 268
Query: 379 QKS-GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
++ G VILFIDE+HTL+G+G +D SNLLKP+L RGE++CI +TT DE+R
Sbjct: 269 SRAEGKVILFIDELHTLVGAGATS-----GAMDASNLLKPALARGEVRCIGATTLDEYRQ 323
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
EKD ALARRFQPV IS+P++ D + IL GL+E+YE HH + T AI AA LS RYI
Sbjct: 324 HIEKDPALARRFQPVFISQPTETDTISILRGLKERYEVHHGIRITDGAIIAAATLSNRYI 383
Query: 498 SDRYLPDKAIDLVDEAGSRAHIEL-----------------------------------F 522
+DR+LPDKAIDL+DEA SR IE+
Sbjct: 384 TDRFLPDKAIDLIDEAASRVRIEMDSKPEVIDELERKVIQLKIEAEALKKESDENSKQRL 443
Query: 523 KRKKEQQTCILSKPPD--DYWQ----EIRTVQAMHEVVQGSRLKYDDVVAS--MGDTSEI 574
K+ E+ + SK D WQ +I +Q E + +R + + V S +G E+
Sbjct: 444 KKINEEIENLNSKFADLNSKWQMEKNKIARIQETAEKLDNARKELELVQRSGNLGRAGEL 503
Query: 575 V------VESSLPS---ASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEE 625
+ +E+ L + +D V DDIA + S W+GIPV + E+ L+ +E
Sbjct: 504 MYGVIPQLENELKNQEKVTDSFLKKEVTGDDIANIVSKWTGIPVDNMMHSEKEKLLNMEN 563
Query: 626 QLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFG 685
++ +RVIGQ +A+ AIS AV+RSR G++D N+P + LF GPTGVGKTELAK+LA F
Sbjct: 564 EIGRRVIGQKDAIEAISNAVRRSRSGVQDTNKPFGSFLFLGPTGVGKTELAKALAEFLFD 623
Query: 686 SESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRRRPFTLLLLDEIEKAHP 745
+S++LR DMSEYME+H+VSKLIG+PPGYVGYE+GG LTEA+RRRP+ ++L DEIEKA+P
Sbjct: 624 DQSALLRFDMSEYMEKHSVSKLIGAPPGYVGYEQGGRLTEAVRRRPYQVILFDEIEKANP 683
Query: 746 DIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTS 805
DIFN+LLQ+ ++G LTDSHG+ + F+N ++++TSN+G+ + KG S+
Sbjct: 684 DIFNLLLQILDEGRLTDSHGKLIDFRNTILILTSNLGAEIMLKGNVDSV----------- 732
Query: 806 YAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQL 846
+ V++ +K+ FRPE LNR+DE+++F SL + + ++
Sbjct: 733 ----RNEVMQIVKSAFRPEFLNRLDEIIIFHSLTRDDIYKI 769
>sp|Q9PKA8|CLPC_CHLMU Probable ATP-dependent Clp protease ATP-binding subunit
OS=Chlamydia muridarum (strain MoPn / Nigg) GN=clpC PE=3
SV=1
Length = 870
Score = 558 bits (1439), Expect = e-158, Method: Compositional matrix adjust.
Identities = 320/785 (40%), Positives = 473/785 (60%), Gaps = 56/785 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHP--NGFLESGITIDKAR 138
+FE+FT RA + + +++EA+ L + + T+H+LLGL+ + N G+ D A+
Sbjct: 17 MFEKFTNRAKQVIKLAKKEAQRLNHNYLGTEHILLGLLKLGQGVAVNVLRTLGVDFDTAK 76
Query: 139 EAVVS-IWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPE 197
V I + Q D A G+ K+ FE+A E + +N++ E
Sbjct: 77 NEVERLIGYGPEIQVYGDPALTGR-------------VKKSFESANEEASILEHNYVGTE 123
Query: 198 HIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQ---------GELAKEGREPSLAK 248
H+ LG+ DG A +VL+ L +D + + L+ + S +
Sbjct: 124 HLLLGILNQADGVALQVLENLHIDPKEIRKEILKELETFNLQLPPSSSITPRNTNSSSSS 183
Query: 249 GVRENSISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCR 308
+ +S+ G + P + SAL+ + DLT E +DPVIGR E++R+I ILCR
Sbjct: 184 SSKSSSLGGHSLGGDKP--EKLSALKAYGYDLTEMFKEARLDPVIGRSAEVERLILILCR 241
Query: 309 RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELE 368
R KNNP+L+GE+GVGKTAI EGLA +IV EVP L KR+++LD+ L++AG K RG+ E
Sbjct: 242 RRKNNPVLIGEAGVGKTAIVEGLAQKIVSGEVPEALRKKRLITLDLALMIAGTKYRGQFE 301
Query: 369 ARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIA 428
R+ ++ E++K G+++LFIDE+HT++G+G +D S++LKP+L RGE+QCI
Sbjct: 302 ERIKAVMDEVRKHGNILLFIDELHTIVGAGAAE-----GAIDASHILKPALARGEIQCIG 356
Query: 429 STTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINA 488
+TT DE+R EKD AL RRFQ +++ PS ++ V IL GL++KYE HHN T EA+ A
Sbjct: 357 ATTLDEYRKHIEKDAALERRFQKIVVQPPSVDETVEILRGLKKKYEEHHNVFITDEALVA 416
Query: 489 AVHLSARYISDRYLPDKAIDLVDEAGSRAHI-------ELFKRKKEQQTCILSKPPDDYW 541
A LS +Y+ R+LPDKAIDL+DEAG+R + EL + + E ++ +K
Sbjct: 417 AAKLSDQYVHGRFLPDKAIDLLDEAGARVRVNTMGQPSELLRLEAEIESTKQAKEQAIGT 476
Query: 542 QEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVA 601
QE ++ + + R K ++ E E +P DE AV A V
Sbjct: 477 QEYEKAASLRDEEKKLREKLSNMKQQWESNKE---EHQVPV----DEEAV------AQVV 523
Query: 602 SLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAA 661
S+ +GIP ++T E L+ LE L+K+VIGQD+AVA+I RA++RSR G+KDPNRP +
Sbjct: 524 SVQTGIPAARLTEAESEKLLMLENTLQKKVIGQDQAVASICRAIRRSRTGIKDPNRPMGS 583
Query: 662 MLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGG 721
LF GPTGVGKT LA+ +A FG E S++++DMSEYME+ +K++GSPPGYVG+EEGG
Sbjct: 584 FLFLGPTGVGKTLLAQQIAVEMFGGEDSLIQVDMSEYMEKFAATKMMGSPPGYVGHEEGG 643
Query: 722 LLTEAIRRRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNV 781
LTE +RRRP+ ++L DEIEKAHPDI +++LQ+ E G LTDS GR++ F+N +I+MTSN+
Sbjct: 644 HLTEQVRRRPYCVVLFDEIEKAHPDIMDLMLQILEQGRLTDSFGRKIDFRNTIIIMTSNL 703
Query: 782 GSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKA 841
G+ I K G IGF L + Y +K + +K + +PE +NR+DE V+F+ LEK
Sbjct: 704 GADLIRKT--GEIGFGLRSH--MDYGVIKEKIDAAVKKHLKPEFINRLDESVIFKPLEKE 759
Query: 842 QVCQL 846
+ ++
Sbjct: 760 ALSEI 764
>sp|Q9JTP9|CLPB_NEIMA Chaperone protein ClpB OS=Neisseria meningitidis serogroup A /
serotype 4A (strain Z2491) GN=clpB PE=3 SV=1
Length = 859
Score = 558 bits (1438), Expect = e-158, Method: Compositional matrix adjust.
Identities = 313/720 (43%), Positives = 430/720 (59%), Gaps = 111/720 (15%)
Query: 189 RGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAK 248
RG +IA E L L +D +AG++LK G ++ A
Sbjct: 101 RGDAYIASELFLLALVQQND-AAGKILKEAGATEQNINAAI------------------- 140
Query: 249 GVRENSISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCR 308
+++ G + + AL+++ +DLT RA + +DPVIGR+ EI+R IQ+L R
Sbjct: 141 ----DAVRGGQNVNDANAEDQRDALKKYTLDLTQRARDGKLDPVIGRDDEIRRAIQVLQR 196
Query: 309 RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELE 368
RTKNNP+L+GE GVGKTAI EGLA RIV EVP L +KR++ LD+ L+AGAK RGE E
Sbjct: 197 RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGEVPESLRNKRLLVLDLAALIAGAKYRGEFE 256
Query: 369 ARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCI 427
R+ +++++ K G+ ++FIDE+HTL+G+G +D N+LKP+L RGEL CI
Sbjct: 257 ERLKGVLNDLAKDDGNTLIFIDEIHTLVGAGKTD-----GAMDAGNMLKPALARGELHCI 311
Query: 428 ASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAIN 487
+TT DE+R EKD AL RRFQ VL+ EPS ED + IL GL+E+YE HH T AI
Sbjct: 312 GATTLDEYRQYIEKDAALERRFQKVLVGEPSVEDTIAILRGLQERYEIHHGIDITDPAIV 371
Query: 488 AAVHLSARYISDRYLPDKAIDLVDEAGS--------------------------RAHIEL 521
AA LS RYI+DR+LPDKAIDL+DEA S +AH+E
Sbjct: 372 AAAELSDRYITDRFLPDKAIDLIDEAASRVKMEKETKPEAMDKIDRRLIQLRMEKAHVEK 431
Query: 522 FKRKKEQQTCILSKPP-----------DDYWQ-------------------EIRTVQAMH 551
K ++ L D+ W+ +I+ QA
Sbjct: 432 EKDDASKKRLELIDEEINGLQKEYADLDEIWKAEKAISDGAANIKKQIDEVKIKIEQAKR 491
Query: 552 E--VVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAV------VGPDDIAAVASL 603
+ + S+L Y+D+ + E ++ + +D +PA VG ++IA V S
Sbjct: 492 QGDLALASKLMYEDL-----EHLEKQRAAAERADTDSTKPANKLLRNNVGAEEIAEVVSR 546
Query: 604 WSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAML 663
+GIPV ++ ER L+ +EE L +RV+GQDEAV A+S A++RSR GL DPN+P + L
Sbjct: 547 MTGIPVSKMMEGERDKLLKMEEVLHRRVVGQDEAVRAVSDAIRRSRSGLADPNKPYGSFL 606
Query: 664 FCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLL 723
F GPTGVGKTEL K+LA F SE ++R+DMSEYME+H V++LIG+PPGYVGYEEGG L
Sbjct: 607 FLGPTGVGKTELCKALAGFLFDSEDHLIRIDMSEYMEKHAVARLIGAPPGYVGYEEGGYL 666
Query: 724 TEAIRRRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGS 783
TE +RR+P++++LLDE+EKAHPD+FNILLQV +DG LTD GR V FKN +IVMTSN+GS
Sbjct: 667 TEQVRRKPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFKNTVIVMTSNIGS 726
Query: 784 TTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQV 843
I + +G Y +K +V+E++K +FRPE++NRIDEVVVF L++A +
Sbjct: 727 QHIQQ-----MGI-------QDYEAVKEVVMEDVKEHFRPEMINRIDEVVVFHGLDQANI 774
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 307,063,481
Number of Sequences: 539616
Number of extensions: 13036414
Number of successful extensions: 54110
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 239
Number of HSP's successfully gapped in prelim test: 1220
Number of HSP's that attempted gapping in prelim test: 51073
Number of HSP's gapped (non-prelim): 3171
length of query: 849
length of database: 191,569,459
effective HSP length: 126
effective length of query: 723
effective length of database: 123,577,843
effective search space: 89346780489
effective search space used: 89346780489
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)