Query 003088
Match_columns 849
No_of_seqs 582 out of 4958
Neff 8.2
Searched_HMMs 46136
Date Thu Mar 28 16:47:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003088.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003088hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0542 clpA ATP-binding subun 100.0 1E-118 3E-123 1029.2 64.1 696 84-849 1-703 (786)
2 CHL00095 clpC Clp protease ATP 100.0 5E-100 1E-104 923.9 68.8 720 81-848 1-729 (821)
3 TIGR03345 VI_ClpV1 type VI sec 100.0 2.3E-96 5E-101 885.4 70.0 725 85-848 1-777 (852)
4 TIGR02639 ClpA ATP-dependent C 100.0 2.2E-95 5E-100 874.4 67.0 658 85-848 1-659 (731)
5 TIGR03346 chaperone_ClpB ATP-d 100.0 3.4E-94 7.3E-99 874.9 68.8 713 85-849 1-774 (852)
6 PRK10865 protein disaggregatio 100.0 4.5E-93 9.7E-98 860.3 64.5 718 80-848 1-776 (857)
7 PRK11034 clpA ATP-dependent Cl 100.0 5.5E-92 1.2E-96 830.9 65.0 662 85-848 2-663 (758)
8 KOG1051 Chaperone HSP104 and r 100.0 2.7E-89 5.9E-94 795.6 54.6 726 76-848 3-781 (898)
9 KOG0733 Nuclear AAA ATPase (VC 100.0 7.6E-44 1.6E-48 388.1 31.8 451 288-848 188-689 (802)
10 KOG0730 AAA+-type ATPase [Post 100.0 5.7E-38 1.2E-42 348.3 27.5 394 290-848 184-612 (693)
11 TIGR01243 CDC48 AAA family ATP 100.0 3.5E-33 7.6E-38 337.5 33.3 413 287-848 175-632 (733)
12 KOG0735 AAA+-type ATPase [Post 100.0 8.7E-31 1.9E-35 290.3 25.5 381 309-848 429-845 (952)
13 KOG0736 Peroxisome assembly fa 100.0 2E-30 4.4E-35 290.2 27.7 394 292-841 403-846 (953)
14 KOG0741 AAA+-type ATPase [Post 100.0 1.1E-26 2.5E-31 250.2 24.1 352 304-755 249-628 (744)
15 TIGR00382 clpX endopeptidase C 99.9 4.7E-24 1E-28 236.2 17.1 215 619-848 67-328 (413)
16 COG2256 MGS1 ATPase related to 99.9 8.8E-24 1.9E-28 224.0 15.5 198 278-516 12-219 (436)
17 COG0464 SpoVK ATPases of the A 99.9 2.6E-22 5.7E-27 233.4 28.4 376 303-848 10-420 (494)
18 PF07724 AAA_2: AAA domain (Cd 99.9 4.1E-24 9E-29 211.1 11.0 155 657-832 1-171 (171)
19 COG1222 RPT1 ATP-dependent 26S 99.9 8.8E-23 1.9E-27 213.0 20.5 201 288-517 149-372 (406)
20 PRK05342 clpX ATP-dependent pr 99.9 4.3E-23 9.3E-28 230.2 16.0 217 618-848 60-322 (412)
21 COG1223 Predicted ATPase (AAA+ 99.9 1.4E-21 3E-26 194.6 18.8 195 280-497 111-319 (368)
22 KOG0730 AAA+-type ATPase [Post 99.9 9.1E-21 2E-25 211.7 22.2 202 288-519 432-654 (693)
23 KOG0738 AAA+-type ATPase [Post 99.9 1.7E-20 3.7E-25 196.8 22.1 203 287-517 209-432 (491)
24 COG2204 AtoC Response regulato 99.9 7.1E-21 1.5E-25 210.9 18.8 179 629-846 141-321 (464)
25 PF05496 RuvB_N: Holliday junc 99.9 5E-21 1.1E-25 191.5 13.4 190 277-514 11-226 (233)
26 KOG0733 Nuclear AAA ATPase (VC 99.8 1.5E-19 3.3E-24 198.8 24.8 180 309-516 543-732 (802)
27 KOG0736 Peroxisome assembly fa 99.8 1E-19 2.2E-24 204.9 23.0 205 287-518 669-896 (953)
28 PF00158 Sigma54_activat: Sigm 99.8 1.3E-20 2.8E-25 185.7 13.7 163 631-831 1-164 (168)
29 KOG0989 Replication factor C, 99.8 2.1E-20 4.6E-25 191.5 15.3 203 276-515 22-236 (346)
30 KOG2028 ATPase related to the 99.8 3.6E-20 7.8E-25 192.3 15.3 189 277-497 125-330 (554)
31 PRK14956 DNA polymerase III su 99.8 8.4E-20 1.8E-24 203.8 19.4 203 278-516 6-229 (484)
32 KOG0739 AAA+-type ATPase [Post 99.8 4E-19 8.6E-24 180.2 19.0 188 288-498 131-336 (439)
33 PRK07003 DNA polymerase III su 99.8 1.7E-19 3.7E-24 207.7 18.1 202 279-516 5-227 (830)
34 CHL00195 ycf46 Ycf46; Provisio 99.8 1.5E-18 3.3E-23 197.3 24.0 204 287-516 225-443 (489)
35 PRK12323 DNA polymerase III su 99.8 3.4E-19 7.3E-24 203.1 17.7 201 279-515 5-231 (700)
36 COG3604 FhlA Transcriptional r 99.8 5.2E-20 1.1E-24 200.0 9.7 174 629-846 223-403 (550)
37 CHL00195 ycf46 Ycf46; Provisio 99.8 1.9E-18 4.1E-23 196.6 22.7 300 383-848 82-402 (489)
38 COG3829 RocR Transcriptional r 99.8 8.2E-20 1.8E-24 201.4 10.2 182 628-846 244-426 (560)
39 COG1219 ClpX ATP-dependent pro 99.8 1.5E-19 3.2E-24 185.4 11.1 219 616-848 48-311 (408)
40 PRK13342 recombination factor 99.8 1.1E-18 2.3E-23 198.0 19.1 194 279-515 1-202 (413)
41 TIGR02881 spore_V_K stage V sp 99.8 2.4E-18 5.1E-23 183.3 20.4 215 288-519 4-240 (261)
42 PRK14949 DNA polymerase III su 99.8 1.6E-18 3.4E-23 203.6 20.0 202 278-515 4-226 (944)
43 KOG0734 AAA+-type ATPase conta 99.8 1E-18 2.3E-23 189.3 16.0 204 284-519 298-523 (752)
44 PRK14960 DNA polymerase III su 99.8 2E-18 4.3E-23 197.3 19.1 202 279-516 4-226 (702)
45 COG1222 RPT1 ATP-dependent 26S 99.8 3.7E-19 8E-24 186.1 12.0 160 629-849 151-333 (406)
46 PLN03025 replication factor C 99.8 2.1E-18 4.5E-23 189.2 17.0 196 279-511 2-202 (319)
47 PRK03992 proteasome-activating 99.8 4.5E-18 9.7E-23 190.7 19.5 200 288-517 129-352 (389)
48 CHL00181 cbbX CbbX; Provisiona 99.8 1.1E-17 2.4E-22 179.4 21.6 213 291-519 24-256 (287)
49 KOG0991 Replication factor C, 99.8 1E-18 2.3E-23 171.6 12.3 208 268-514 5-219 (333)
50 PRK07994 DNA polymerase III su 99.8 4E-18 8.6E-23 198.1 18.8 203 278-516 4-227 (647)
51 PRK14958 DNA polymerase III su 99.8 6.1E-18 1.3E-22 194.4 19.0 202 279-516 5-227 (509)
52 PRK14962 DNA polymerase III su 99.8 8.6E-18 1.9E-22 191.2 19.1 201 279-515 3-224 (472)
53 PTZ00454 26S protease regulato 99.8 1.1E-17 2.3E-22 186.7 19.3 202 288-518 143-367 (398)
54 PRK14964 DNA polymerase III su 99.8 9.9E-18 2.1E-22 189.6 19.1 203 279-517 2-225 (491)
55 PLN00020 ribulose bisphosphate 99.8 1.9E-17 4.1E-22 176.4 19.8 160 308-492 145-327 (413)
56 PRK13341 recombination factor 99.8 8.8E-18 1.9E-22 199.3 19.0 200 279-515 17-223 (725)
57 TIGR01243 CDC48 AAA family ATP 99.8 4.6E-17 9.9E-22 197.5 25.4 202 288-518 451-673 (733)
58 PRK14952 DNA polymerase III su 99.8 1.8E-17 3.9E-22 191.9 20.5 202 279-516 2-226 (584)
59 KOG0740 AAA+-type ATPase [Post 99.8 1.7E-17 3.8E-22 181.3 18.8 205 283-515 146-369 (428)
60 TIGR01241 FtsH_fam ATP-depende 99.8 1.2E-17 2.6E-22 193.8 18.2 203 287-516 52-274 (495)
61 KOG0735 AAA+-type ATPase [Post 99.8 1.4E-17 3E-22 186.1 16.9 197 288-513 665-881 (952)
62 PF05496 RuvB_N: Holliday junc 99.8 5.4E-18 1.2E-22 169.8 12.4 160 627-848 22-189 (233)
63 PRK14957 DNA polymerase III su 99.8 2.8E-17 6.1E-22 188.5 20.0 203 278-516 4-227 (546)
64 PRK14961 DNA polymerase III su 99.8 3.1E-17 6.7E-22 182.7 19.7 203 278-516 4-227 (363)
65 PRK14951 DNA polymerase III su 99.7 2.1E-17 4.6E-22 191.8 18.3 202 279-516 5-232 (618)
66 PRK07764 DNA polymerase III su 99.7 2.7E-17 5.8E-22 197.3 19.7 202 278-515 3-227 (824)
67 TIGR02880 cbbX_cfxQ probable R 99.7 9.9E-17 2.2E-21 172.2 22.1 212 291-518 23-254 (284)
68 COG2255 RuvB Holliday junction 99.7 8.8E-17 1.9E-21 163.4 20.0 192 279-518 15-232 (332)
69 PTZ00361 26 proteosome regulat 99.7 1.9E-17 4.1E-22 185.7 16.7 203 285-517 178-404 (438)
70 COG0464 SpoVK ATPases of the A 99.7 4.6E-17 1E-21 189.5 20.0 204 287-518 239-463 (494)
71 KOG0728 26S proteasome regulat 99.7 6.8E-17 1.5E-21 160.2 16.7 201 289-518 146-369 (404)
72 PRK06645 DNA polymerase III su 99.7 7E-17 1.5E-21 184.3 19.3 204 278-517 9-237 (507)
73 KOG0737 AAA+-type ATPase [Post 99.7 3.7E-17 8E-22 172.3 15.6 196 288-516 90-310 (386)
74 PRK08691 DNA polymerase III su 99.7 5.1E-17 1.1E-21 187.7 18.3 202 279-516 5-227 (709)
75 TIGR03689 pup_AAA proteasome A 99.7 3.1E-17 6.7E-22 186.2 15.8 179 285-471 177-379 (512)
76 PRK14959 DNA polymerase III su 99.7 7.9E-17 1.7E-21 185.6 19.2 200 279-514 5-225 (624)
77 PF01078 Mg_chelatase: Magnesi 99.7 4.2E-18 9.1E-23 169.8 7.1 179 629-842 3-206 (206)
78 TIGR02974 phageshock_pspF psp 99.7 1.5E-17 3.2E-22 182.0 12.1 179 631-847 1-183 (329)
79 CHL00176 ftsH cell division pr 99.7 1.2E-16 2.6E-21 187.4 20.4 204 287-517 180-403 (638)
80 PRK08451 DNA polymerase III su 99.7 1.5E-16 3.3E-21 181.6 19.6 203 279-517 3-226 (535)
81 TIGR00763 lon ATP-dependent pr 99.7 2.3E-16 5E-21 191.7 22.3 206 595-848 287-502 (775)
82 KOG0731 AAA+-type ATPase conta 99.7 1.9E-16 4.1E-21 182.9 20.2 204 287-516 308-532 (774)
83 PRK15424 propionate catabolism 99.7 2.6E-17 5.7E-22 189.1 12.8 181 629-846 219-411 (538)
84 PRK05896 DNA polymerase III su 99.7 2.1E-16 4.5E-21 181.2 20.0 203 278-516 4-227 (605)
85 CHL00181 cbbX CbbX; Provisiona 99.7 7.1E-17 1.5E-21 173.1 14.9 174 617-848 11-206 (287)
86 PRK00080 ruvB Holliday junctio 99.7 9E-16 2E-20 169.1 23.7 190 280-517 15-230 (328)
87 PRK09111 DNA polymerase III su 99.7 2.6E-16 5.7E-21 183.3 19.7 203 278-516 12-240 (598)
88 PRK07133 DNA polymerase III su 99.7 3E-16 6.6E-21 183.3 20.2 202 278-515 6-225 (725)
89 PRK14969 DNA polymerase III su 99.7 1.3E-16 2.9E-21 184.6 17.0 202 279-516 5-227 (527)
90 PRK05563 DNA polymerase III su 99.7 3.2E-16 6.9E-21 182.7 19.5 202 279-516 5-227 (559)
91 PRK14963 DNA polymerase III su 99.7 2.7E-16 5.8E-21 180.5 18.5 201 279-515 3-223 (504)
92 TIGR02329 propionate_PrpR prop 99.7 5.5E-17 1.2E-21 186.8 12.7 181 629-846 212-396 (526)
93 TIGR02902 spore_lonB ATP-depen 99.7 1.8E-16 3.8E-21 184.2 16.5 214 276-517 51-312 (531)
94 TIGR01242 26Sp45 26S proteasom 99.7 3.3E-16 7.1E-21 175.0 18.2 200 288-517 120-343 (364)
95 PRK14965 DNA polymerase III su 99.7 3.2E-16 6.9E-21 183.6 18.5 203 279-517 5-228 (576)
96 PHA02544 44 clamp loader, smal 99.7 4.7E-16 1E-20 170.9 18.7 186 278-495 9-201 (316)
97 KOG0727 26S proteasome regulat 99.7 1.9E-16 4E-21 157.3 13.8 148 308-474 186-343 (408)
98 COG2812 DnaX DNA polymerase II 99.7 1.4E-16 2.9E-21 179.5 14.3 203 279-517 5-228 (515)
99 TIGR00635 ruvB Holliday juncti 99.7 2.8E-15 6.1E-20 163.8 23.7 180 288-515 2-207 (305)
100 TIGR02880 cbbX_cfxQ probable R 99.7 1.9E-16 4.1E-21 170.1 14.1 176 617-848 10-205 (284)
101 PRK12402 replication factor C 99.7 8.2E-16 1.8E-20 170.5 19.6 202 279-513 4-230 (337)
102 TIGR02639 ClpA ATP-dependent C 99.7 3.9E-14 8.4E-19 171.5 35.4 179 290-493 454-690 (731)
103 KOG0745 Putative ATP-dependent 99.7 1E-16 2.2E-21 170.5 11.2 174 660-847 227-451 (564)
104 PRK11608 pspF phage shock prot 99.7 1.7E-16 3.7E-21 173.9 13.1 180 629-846 6-189 (326)
105 PRK06647 DNA polymerase III su 99.7 9.9E-16 2.1E-20 177.8 20.0 203 278-516 4-227 (563)
106 PRK04195 replication factor C 99.7 4.7E-16 1E-20 179.8 17.0 193 278-512 2-205 (482)
107 COG3283 TyrR Transcriptional r 99.7 1.6E-16 3.5E-21 165.1 11.6 170 628-839 203-373 (511)
108 KOG0652 26S proteasome regulat 99.7 3.4E-16 7.4E-21 156.1 12.8 199 289-516 170-391 (424)
109 TIGR01817 nifA Nif-specific re 99.7 1.7E-16 3.6E-21 186.3 12.4 181 629-847 196-380 (534)
110 KOG0732 AAA+-type ATPase conta 99.7 5.2E-16 1.1E-20 183.7 16.4 209 287-518 262-490 (1080)
111 COG1221 PspF Transcriptional r 99.7 1.2E-16 2.6E-21 174.5 9.5 178 626-847 75-257 (403)
112 PRK14953 DNA polymerase III su 99.7 2.1E-15 4.5E-20 172.6 19.8 202 279-516 5-227 (486)
113 COG1223 Predicted ATPase (AAA+ 99.7 1.6E-16 3.4E-21 158.8 8.9 157 628-848 120-294 (368)
114 KOG0726 26S proteasome regulat 99.7 2.5E-16 5.3E-21 159.5 10.3 168 287-473 182-372 (440)
115 PRK06305 DNA polymerase III su 99.7 3E-15 6.4E-20 170.4 20.4 202 278-515 5-228 (451)
116 PRK14955 DNA polymerase III su 99.7 1.6E-15 3.4E-20 171.0 17.7 202 279-516 5-235 (397)
117 TIGR02397 dnaX_nterm DNA polym 99.7 3.6E-15 7.8E-20 166.6 19.7 201 279-515 3-224 (355)
118 PRK05201 hslU ATP-dependent pr 99.7 5.7E-16 1.2E-20 169.2 12.6 193 620-848 6-345 (443)
119 PRK10820 DNA-binding transcrip 99.7 5.2E-16 1.1E-20 180.4 13.2 180 628-845 203-386 (520)
120 PRK14954 DNA polymerase III su 99.6 4.5E-15 9.7E-20 173.2 20.4 203 279-517 5-236 (620)
121 PRK05022 anaerobic nitric oxid 99.6 7.6E-16 1.6E-20 179.1 13.6 179 629-845 187-369 (509)
122 CHL00206 ycf2 Ycf2; Provisiona 99.6 1.7E-15 3.7E-20 186.3 16.8 178 310-519 1629-1859(2281)
123 KOG0729 26S proteasome regulat 99.6 8.7E-16 1.9E-20 153.7 11.5 201 288-517 175-398 (435)
124 PRK14971 DNA polymerase III su 99.6 4.7E-15 1E-19 174.1 19.1 203 278-516 5-229 (614)
125 PRK14970 DNA polymerase III su 99.6 5.3E-15 1.2E-19 165.8 18.7 203 278-516 5-216 (367)
126 PRK14948 DNA polymerase III su 99.6 5.4E-15 1.2E-19 173.6 19.2 200 278-513 4-226 (620)
127 PRK00440 rfc replication facto 99.6 4.3E-15 9.3E-20 163.4 17.1 201 278-515 5-209 (319)
128 COG0466 Lon ATP-dependent Lon 99.6 1.9E-14 4E-19 163.1 22.1 206 594-847 289-504 (782)
129 TIGR02881 spore_V_K stage V sp 99.6 2.5E-15 5.5E-20 160.1 13.6 164 629-848 6-188 (261)
130 PRK08084 DNA replication initi 99.6 1.6E-14 3.5E-19 151.1 18.9 178 289-497 21-203 (235)
131 PRK11388 DNA-binding transcrip 99.6 1.6E-15 3.4E-20 182.0 12.4 179 628-846 324-505 (638)
132 CHL00095 clpC Clp protease ATP 99.6 5.8E-13 1.2E-17 163.2 34.9 182 290-493 509-760 (821)
133 COG0465 HflB ATP-dependent Zn 99.6 4.6E-15 1E-19 169.0 15.3 203 287-517 147-370 (596)
134 PRK10787 DNA-binding ATP-depen 99.6 1.6E-14 3.5E-19 173.9 20.7 206 594-848 288-503 (784)
135 PRK14950 DNA polymerase III su 99.6 1.4E-14 3.1E-19 170.6 19.6 201 279-515 5-227 (585)
136 COG0542 clpA ATP-binding subun 99.6 1.8E-13 4E-18 159.8 28.2 183 290-494 491-734 (786)
137 TIGR00390 hslU ATP-dependent p 99.6 3.2E-15 6.9E-20 163.3 12.8 191 620-847 3-342 (441)
138 COG5271 MDN1 AAA ATPase contai 99.6 3E-13 6.5E-18 160.2 29.2 147 662-848 891-1044(4600)
139 PRK10733 hflB ATP-dependent me 99.6 1.2E-14 2.5E-19 172.9 17.7 204 288-518 150-373 (644)
140 PRK15429 formate hydrogenlyase 99.6 7.8E-15 1.7E-19 177.0 14.9 174 629-840 376-551 (686)
141 TIGR02903 spore_lon_C ATP-depe 99.6 7.3E-14 1.6E-18 164.8 21.7 213 277-517 141-402 (615)
142 PF00004 AAA: ATPase family as 99.6 1.5E-14 3.3E-19 137.1 12.8 123 314-455 1-131 (132)
143 TIGR00763 lon ATP-dependent pr 99.6 1.8E-14 3.9E-19 175.3 16.8 178 291-493 321-534 (775)
144 KOG0989 Replication factor C, 99.6 5.9E-15 1.3E-19 151.9 10.6 163 611-847 23-197 (346)
145 COG2256 MGS1 ATPase related to 99.6 4.5E-15 9.9E-20 158.2 9.8 143 629-848 24-173 (436)
146 KOG0727 26S proteasome regulat 99.6 9.3E-15 2E-19 145.3 11.2 156 630-846 156-334 (408)
147 COG2255 RuvB Holliday junction 99.6 1E-14 2.2E-19 148.5 11.6 161 626-848 23-191 (332)
148 TIGR02902 spore_lonB ATP-depen 99.6 1.5E-14 3.4E-19 168.1 14.6 175 629-848 65-273 (531)
149 PRK13531 regulatory ATPase Rav 99.6 3.1E-14 6.8E-19 158.7 14.9 178 617-847 8-190 (498)
150 KOG0734 AAA+-type ATPase conta 99.6 1E-14 2.2E-19 158.7 10.3 157 628-848 303-481 (752)
151 COG0606 Predicted ATPase with 99.5 4.1E-15 8.8E-20 162.6 6.6 210 589-843 139-384 (490)
152 TIGR02640 gas_vesic_GvpN gas v 99.5 6.5E-14 1.4E-18 149.1 15.0 147 662-848 24-195 (262)
153 PRK10923 glnG nitrogen regulat 99.5 2.1E-14 4.6E-19 166.5 11.8 172 630-839 139-312 (469)
154 KOG0651 26S proteasome regulat 99.5 2E-14 4.4E-19 147.5 10.0 185 288-496 130-337 (388)
155 KOG0738 AAA+-type ATPase [Post 99.5 3.8E-14 8.3E-19 149.4 11.5 150 595-782 192-362 (491)
156 KOG0728 26S proteasome regulat 99.5 4.1E-14 8.9E-19 140.7 10.6 159 630-849 148-329 (404)
157 PRK05201 hslU ATP-dependent pr 99.5 2E-13 4.3E-18 149.4 17.0 112 382-495 249-382 (443)
158 PRK07940 DNA polymerase III su 99.5 1.2E-13 2.5E-18 154.1 15.5 175 288-497 3-207 (394)
159 PRK06893 DNA replication initi 99.5 2.9E-13 6.2E-18 141.2 17.4 179 287-497 13-197 (229)
160 KOG2004 Mitochondrial ATP-depe 99.5 4.3E-13 9.4E-18 151.0 19.6 203 597-847 380-592 (906)
161 COG5271 MDN1 AAA ATPase contai 99.5 8.1E-13 1.8E-17 156.6 22.2 135 309-468 886-1045(4600)
162 TIGR00390 hslU ATP-dependent p 99.5 2.4E-13 5.2E-18 148.7 16.9 112 382-495 247-380 (441)
163 TIGR02915 PEP_resp_reg putativ 99.5 1E-13 2.2E-18 159.8 14.7 173 629-839 139-313 (445)
164 PRK14956 DNA polymerase III su 99.5 4.8E-14 1E-18 157.9 11.2 173 613-847 7-189 (484)
165 PLN03025 replication factor C 99.5 7.4E-14 1.6E-18 153.2 12.4 158 613-847 2-167 (319)
166 PRK07003 DNA polymerase III su 99.5 4.2E-14 9E-19 163.6 10.7 162 629-847 16-187 (830)
167 PRK15115 response regulator Gl 99.5 4.3E-13 9.4E-18 154.5 19.3 172 630-839 135-308 (444)
168 PRK12323 DNA polymerase III su 99.5 3.2E-14 6.9E-19 162.7 9.5 161 629-846 16-191 (700)
169 PRK03992 proteasome-activating 99.5 1E-13 2.2E-18 155.6 13.4 159 629-848 131-312 (389)
170 KOG0742 AAA+-type ATPase [Post 99.5 5.6E-13 1.2E-17 141.0 17.9 192 267-477 327-535 (630)
171 PTZ00112 origin recognition co 99.5 5.6E-13 1.2E-17 154.5 19.3 209 290-516 755-988 (1164)
172 KOG2035 Replication factor C, 99.5 4.8E-13 1E-17 135.5 16.4 202 280-513 3-232 (351)
173 PF14532 Sigma54_activ_2: Sigm 99.5 4.3E-14 9.2E-19 135.6 8.5 137 632-838 1-138 (138)
174 TIGR00368 Mg chelatase-related 99.5 6.7E-14 1.5E-18 160.1 11.5 187 629-844 192-397 (499)
175 COG3284 AcoR Transcriptional a 99.5 4E-14 8.6E-19 159.6 9.2 170 632-840 316-487 (606)
176 PRK05642 DNA replication initi 99.5 8.2E-13 1.8E-17 138.1 18.0 155 311-497 45-202 (234)
177 PRK14949 DNA polymerase III su 99.5 6.3E-14 1.4E-18 165.2 10.5 163 629-847 16-187 (944)
178 TIGR03689 pup_AAA proteasome A 99.5 1.2E-13 2.6E-18 157.2 12.0 158 630-848 183-375 (512)
179 KOG2170 ATPase of the AAA+ sup 99.5 7.2E-14 1.6E-18 143.4 9.2 211 619-847 72-296 (344)
180 KOG0726 26S proteasome regulat 99.5 8.8E-14 1.9E-18 141.2 9.7 160 629-849 185-367 (440)
181 KOG0729 26S proteasome regulat 99.5 1.1E-13 2.4E-18 138.7 10.3 160 629-849 177-359 (435)
182 PRK12422 chromosomal replicati 99.5 1.9E-12 4.2E-17 146.9 21.6 187 288-497 109-307 (445)
183 COG0466 Lon ATP-dependent Lon 99.5 2.6E-13 5.6E-18 154.0 14.2 199 290-513 323-557 (782)
184 PRK05342 clpX ATP-dependent pr 99.5 1.3E-12 2.9E-17 146.3 19.9 191 292-493 73-357 (412)
185 PRK07940 DNA polymerase III su 99.5 2.4E-13 5.2E-18 151.5 13.7 170 628-847 4-185 (394)
186 PRK08727 hypothetical protein; 99.5 2.7E-12 5.9E-17 134.2 20.7 188 288-513 17-208 (233)
187 PRK11361 acetoacetate metaboli 99.5 1.9E-13 4.2E-18 158.1 12.6 172 630-839 144-317 (457)
188 KOG2004 Mitochondrial ATP-depe 99.5 4E-13 8.7E-18 151.2 14.5 190 290-504 411-636 (906)
189 PRK14086 dnaA chromosomal repl 99.5 1.9E-12 4.2E-17 148.9 20.4 187 288-496 286-481 (617)
190 TIGR01818 ntrC nitrogen regula 99.5 2.4E-13 5.2E-18 157.5 12.9 180 630-847 135-318 (463)
191 PRK00149 dnaA chromosomal repl 99.5 2.3E-12 5.1E-17 148.0 20.3 188 288-497 120-316 (450)
192 PTZ00454 26S protease regulato 99.5 2.9E-13 6.3E-18 151.2 12.4 159 629-848 145-326 (398)
193 PRK07994 DNA polymerase III su 99.5 1.6E-13 3.5E-18 159.9 10.3 163 628-847 15-187 (647)
194 PRK11034 clpA ATP-dependent Cl 99.5 6.8E-12 1.5E-16 150.1 24.4 178 291-493 459-694 (758)
195 PLN00020 ribulose bisphosphate 99.5 5.5E-13 1.2E-17 142.6 13.3 136 660-848 149-308 (413)
196 PRK14088 dnaA chromosomal repl 99.4 4.5E-12 9.8E-17 144.3 21.3 187 288-497 103-299 (440)
197 PRK09112 DNA polymerase III su 99.4 1.8E-12 3.8E-17 142.8 17.3 201 284-514 17-245 (351)
198 TIGR03420 DnaA_homol_Hda DnaA 99.4 5.9E-12 1.3E-16 131.4 20.4 188 289-515 14-207 (226)
199 TIGR00362 DnaA chromosomal rep 99.4 2.7E-12 5.8E-17 145.8 19.2 187 288-496 108-303 (405)
200 TIGR00602 rad24 checkpoint pro 99.4 1.1E-12 2.5E-17 152.9 16.2 223 277-515 71-329 (637)
201 TIGR02928 orc1/cdc6 family rep 99.4 3.8E-12 8.2E-17 142.9 19.7 210 290-517 15-254 (365)
202 PRK10787 DNA-binding ATP-depen 99.4 1.3E-12 2.8E-17 157.5 16.6 177 289-491 320-533 (784)
203 PRK14958 DNA polymerase III su 99.4 2.7E-13 5.8E-18 156.2 10.1 170 615-845 7-185 (509)
204 PF00308 Bac_DnaA: Bacterial d 99.4 1.6E-12 3.5E-17 134.3 14.7 186 288-497 6-202 (219)
205 KOG0990 Replication factor C, 99.4 5.4E-13 1.2E-17 138.2 10.7 210 269-515 20-238 (360)
206 COG0714 MoxR-like ATPases [Gen 99.4 1E-12 2.3E-17 144.8 13.7 165 621-838 16-189 (329)
207 PRK07471 DNA polymerase III su 99.4 2.7E-12 5.8E-17 142.0 16.7 196 284-511 13-240 (365)
208 PRK00080 ruvB Holliday junctio 99.4 1.4E-12 3E-17 143.8 14.1 158 629-848 25-190 (328)
209 PRK14964 DNA polymerase III su 99.4 5.1E-13 1.1E-17 151.6 10.7 163 629-847 13-184 (491)
210 KOG0731 AAA+-type ATPase conta 99.4 6.2E-13 1.4E-17 154.1 11.4 159 628-848 310-492 (774)
211 TIGR00635 ruvB Holliday juncti 99.4 1.5E-12 3.2E-17 142.4 13.8 158 629-848 4-169 (305)
212 PRK08903 DnaA regulatory inact 99.4 8E-12 1.7E-16 130.5 18.6 182 287-512 15-202 (227)
213 PRK14960 DNA polymerase III su 99.4 8.4E-13 1.8E-17 151.6 12.0 162 629-847 15-186 (702)
214 TIGR01241 FtsH_fam ATP-depende 99.4 7.9E-13 1.7E-17 153.7 12.0 156 629-848 55-235 (495)
215 TIGR02640 gas_vesic_GvpN gas v 99.4 3.7E-12 7.9E-17 135.7 15.8 164 298-497 10-216 (262)
216 PRK07764 DNA polymerase III su 99.4 7.8E-13 1.7E-17 159.2 11.6 171 614-847 5-188 (824)
217 PRK07133 DNA polymerase III su 99.4 7.2E-13 1.6E-17 155.2 10.9 173 613-847 7-186 (725)
218 PRK13407 bchI magnesium chelat 99.4 1.3E-12 2.8E-17 142.2 11.7 174 629-846 8-211 (334)
219 PRK14952 DNA polymerase III su 99.4 1.2E-12 2.6E-17 152.0 12.0 163 629-847 13-186 (584)
220 PRK14961 DNA polymerase III su 99.4 9.7E-13 2.1E-17 146.7 10.6 163 629-847 16-187 (363)
221 PRK06620 hypothetical protein; 99.4 5.7E-12 1.2E-16 129.6 15.4 136 312-497 45-183 (214)
222 KOG0652 26S proteasome regulat 99.4 1.4E-12 3E-17 130.5 10.3 159 629-849 171-353 (424)
223 PRK00411 cdc6 cell division co 99.4 1.8E-11 3.9E-16 138.8 20.9 207 290-517 30-262 (394)
224 KOG0739 AAA+-type ATPase [Post 99.4 1.3E-12 2.7E-17 133.3 10.0 158 629-848 133-309 (439)
225 PRK09862 putative ATP-dependen 99.4 1.3E-12 2.8E-17 148.8 11.2 185 629-844 191-394 (506)
226 PRK14957 DNA polymerase III su 99.4 9.6E-13 2.1E-17 151.4 10.2 171 615-847 7-187 (546)
227 TIGR01650 PD_CobS cobaltochela 99.4 3.4E-12 7.3E-17 136.8 13.5 154 661-847 66-229 (327)
228 PRK14962 DNA polymerase III su 99.4 1.4E-12 3E-17 148.8 11.2 170 615-847 5-185 (472)
229 PHA02244 ATPase-like protein 99.4 8E-12 1.7E-16 135.1 16.4 168 628-840 95-263 (383)
230 PRK14951 DNA polymerase III su 99.4 1.2E-12 2.7E-17 152.4 10.9 162 629-847 16-192 (618)
231 PF07728 AAA_5: AAA domain (dy 99.4 1.6E-12 3.5E-17 124.8 10.0 114 661-783 1-125 (139)
232 COG1220 HslU ATP-dependent pro 99.4 1.3E-12 2.8E-17 135.7 9.7 76 620-699 6-87 (444)
233 PTZ00361 26 proteosome regulat 99.4 1.3E-12 2.9E-17 146.8 10.5 159 629-848 183-364 (438)
234 PRK14087 dnaA chromosomal repl 99.4 1.6E-11 3.5E-16 140.0 19.4 200 287-514 112-324 (450)
235 PRK14959 DNA polymerase III su 99.4 1E-12 2.2E-17 151.9 9.6 172 613-847 5-187 (624)
236 CHL00081 chlI Mg-protoporyphyr 99.4 1.5E-12 3.3E-17 141.7 10.4 175 628-847 16-228 (350)
237 PRK05564 DNA polymerase III su 99.4 1E-11 2.3E-16 136.0 16.6 174 288-495 2-182 (313)
238 PRK13342 recombination factor 99.4 3E-12 6.5E-17 145.4 12.7 143 629-847 12-160 (413)
239 TIGR02903 spore_lon_C ATP-depe 99.4 1.6E-11 3.4E-16 145.2 19.0 175 629-848 154-363 (615)
240 TIGR00382 clpX endopeptidase C 99.4 2.8E-11 6.1E-16 134.8 19.7 193 291-494 78-364 (413)
241 KOG0744 AAA+-type ATPase [Post 99.4 4.1E-12 8.8E-17 131.3 11.9 152 314-473 180-343 (423)
242 TIGR01242 26Sp45 26S proteasom 99.4 2.7E-12 5.9E-17 143.6 11.1 159 629-848 122-303 (364)
243 PF06068 TIP49: TIP49 C-termin 99.3 2.2E-11 4.8E-16 130.1 16.7 97 383-496 279-383 (398)
244 PRK10365 transcriptional regul 99.3 3.8E-12 8.2E-17 146.6 11.7 171 631-839 141-313 (441)
245 PRK06645 DNA polymerase III su 99.3 3.3E-12 7.1E-17 146.2 10.9 173 613-847 10-196 (507)
246 KOG2028 ATPase related to the 99.3 1.8E-12 3.8E-17 135.6 7.8 156 614-847 128-290 (554)
247 PRK07399 DNA polymerase III su 99.3 5E-12 1.1E-16 137.3 11.5 160 628-847 3-191 (314)
248 PRK05563 DNA polymerase III su 99.3 5.6E-12 1.2E-16 147.3 12.6 163 628-847 15-187 (559)
249 PRK05896 DNA polymerase III su 99.3 2.6E-12 5.5E-17 147.9 9.5 174 613-847 5-187 (605)
250 PF00004 AAA: ATPase family as 99.3 4.5E-12 9.7E-17 120.1 9.6 116 662-836 1-131 (132)
251 PRK08451 DNA polymerase III su 99.3 4.4E-12 9.5E-17 145.2 11.2 169 615-847 5-185 (535)
252 PRK14965 DNA polymerase III su 99.3 2.6E-12 5.7E-17 150.8 9.3 163 628-846 15-186 (576)
253 COG1224 TIP49 DNA helicase TIP 99.3 5E-11 1.1E-15 125.0 17.4 116 383-520 292-415 (450)
254 PRK12402 replication factor C 99.3 1E-11 2.2E-16 137.7 13.2 172 612-847 3-193 (337)
255 COG1224 TIP49 DNA helicase TIP 99.3 1.3E-11 2.8E-16 129.4 12.6 79 733-849 293-372 (450)
256 PRK09087 hypothetical protein; 99.3 6.5E-11 1.4E-15 122.9 18.0 142 312-497 45-189 (226)
257 PRK14969 DNA polymerase III su 99.3 3.5E-12 7.6E-17 148.0 9.4 160 629-845 16-185 (527)
258 TIGR02442 Cob-chelat-sub cobal 99.3 7.5E-12 1.6E-16 148.9 12.3 162 629-839 4-201 (633)
259 CHL00176 ftsH cell division pr 99.3 6.3E-12 1.4E-16 147.9 11.4 156 629-848 183-363 (638)
260 PRK08691 DNA polymerase III su 99.3 3.2E-12 6.9E-17 148.4 8.7 163 629-847 16-187 (709)
261 PRK09111 DNA polymerase III su 99.3 4.9E-12 1.1E-16 147.8 10.3 163 629-847 24-200 (598)
262 PRK14953 DNA polymerase III su 99.3 4.9E-12 1.1E-16 145.0 10.0 173 614-847 6-187 (486)
263 TIGR02030 BchI-ChlI magnesium 99.3 8.7E-12 1.9E-16 136.1 11.3 175 629-847 4-215 (337)
264 PF13177 DNA_pol3_delta2: DNA 99.3 4.9E-12 1.1E-16 124.4 8.3 151 633-839 1-162 (162)
265 TIGR00678 holB DNA polymerase 99.3 3.3E-11 7.2E-16 122.0 14.6 160 301-496 3-184 (188)
266 PF07726 AAA_3: ATPase family 99.3 5.2E-12 1.1E-16 115.9 7.6 106 661-781 1-112 (131)
267 COG1474 CDC6 Cdc6-related prot 99.3 1.5E-10 3.2E-15 128.1 20.6 214 291-521 18-249 (366)
268 PRK07399 DNA polymerase III su 99.3 5.6E-11 1.2E-15 129.2 17.0 194 288-512 2-224 (314)
269 PRK14963 DNA polymerase III su 99.3 8.9E-12 1.9E-16 143.4 11.2 162 629-847 14-184 (504)
270 CHL00081 chlI Mg-protoporyphyr 99.3 8.1E-11 1.8E-15 128.3 18.0 171 279-469 5-231 (350)
271 PF05673 DUF815: Protein of un 99.3 2.1E-10 4.5E-15 117.2 19.4 166 287-486 24-219 (249)
272 PRK13407 bchI magnesium chelat 99.3 4E-11 8.7E-16 130.6 15.3 164 286-469 4-215 (334)
273 PF06068 TIP49: TIP49 C-termin 99.3 1.5E-11 3.3E-16 131.4 11.3 78 733-848 280-358 (398)
274 PRK06305 DNA polymerase III su 99.3 1E-11 2.2E-16 141.6 10.4 161 629-847 17-189 (451)
275 PF05621 TniB: Bacterial TniB 99.3 2.2E-10 4.8E-15 120.6 19.5 215 290-518 34-270 (302)
276 COG2812 DnaX DNA polymerase II 99.3 5.3E-12 1.2E-16 142.7 7.8 163 627-846 14-186 (515)
277 KOG0742 AAA+-type ATPase [Post 99.3 9.3E-12 2E-16 131.9 9.0 157 630-848 356-525 (630)
278 PRK07471 DNA polymerase III su 99.3 1.2E-11 2.7E-16 136.8 10.3 159 629-847 19-209 (365)
279 PRK09112 DNA polymerase III su 99.3 1.4E-11 3.1E-16 135.6 10.2 163 629-847 23-209 (351)
280 COG1219 ClpX ATP-dependent pro 99.3 9.2E-11 2E-15 121.3 15.3 175 310-495 96-348 (408)
281 PRK04195 replication factor C 99.3 2E-11 4.2E-16 141.5 11.4 163 612-847 2-169 (482)
282 COG0593 DnaA ATPase involved i 99.2 4.2E-10 9E-15 124.0 20.8 182 292-497 90-280 (408)
283 PRK11331 5-methylcytosine-spec 99.2 9.7E-11 2.1E-15 130.1 15.8 142 629-782 175-335 (459)
284 CHL00206 ycf2 Ycf2; Provisiona 99.2 1.8E-11 4E-16 151.6 10.8 142 659-845 1630-1811(2281)
285 PRK14955 DNA polymerase III su 99.2 1.5E-11 3.3E-16 138.8 9.1 160 629-846 16-194 (397)
286 PRK14948 DNA polymerase III su 99.2 2.4E-11 5.1E-16 143.1 10.7 160 629-845 16-187 (620)
287 PRK04132 replication factor C 99.2 9.4E-11 2E-15 140.3 15.8 160 315-515 568-737 (846)
288 PRK14954 DNA polymerase III su 99.2 2.5E-11 5.5E-16 142.0 10.7 160 629-846 16-194 (620)
289 COG1220 HslU ATP-dependent pro 99.2 1.1E-10 2.3E-15 121.7 13.9 111 383-495 251-383 (444)
290 COG0470 HolB ATPase involved i 99.2 1E-10 2.2E-15 129.0 14.9 155 290-466 1-177 (325)
291 PRK08058 DNA polymerase III su 99.2 6E-11 1.3E-15 130.4 12.8 154 289-467 4-179 (329)
292 TIGR02397 dnaX_nterm DNA polym 99.2 3E-11 6.6E-16 135.0 10.6 160 629-847 14-185 (355)
293 PRK13341 recombination factor 99.2 4.2E-11 9.2E-16 142.7 12.0 155 613-848 17-178 (725)
294 PTZ00111 DNA replication licen 99.2 1.3E-10 2.9E-15 138.0 15.9 171 591-782 422-610 (915)
295 PRK05564 DNA polymerase III su 99.2 5.3E-11 1.2E-15 130.4 11.8 154 629-847 4-161 (313)
296 TIGR03345 VI_ClpV1 type VI sec 99.2 1.8E-10 4E-15 140.6 17.5 184 290-495 566-811 (852)
297 KOG1969 DNA replication checkp 99.2 1.2E-10 2.5E-15 132.2 14.4 184 277-498 258-505 (877)
298 PHA02544 44 clamp loader, smal 99.2 4.4E-11 9.5E-16 131.5 10.9 156 611-846 8-168 (316)
299 PRK00440 rfc replication facto 99.2 7.9E-11 1.7E-15 129.6 13.0 160 611-847 4-170 (319)
300 PRK06647 DNA polymerase III su 99.2 4.5E-11 9.8E-16 139.2 11.3 161 629-847 16-187 (563)
301 PRK08058 DNA polymerase III su 99.2 3.8E-11 8.2E-16 132.0 10.1 163 629-847 5-178 (329)
302 TIGR01650 PD_CobS cobaltochela 99.2 4.8E-11 1E-15 128.0 10.6 153 292-470 47-233 (327)
303 COG1239 ChlI Mg-chelatase subu 99.2 7.1E-11 1.5E-15 128.1 11.5 174 627-847 15-228 (423)
304 smart00350 MCM minichromosome 99.2 1.8E-10 3.9E-15 134.0 15.7 193 620-846 194-395 (509)
305 COG0465 HflB ATP-dependent Zn 99.2 4.5E-11 9.8E-16 136.7 10.4 158 629-848 150-330 (596)
306 KOG0737 AAA+-type ATPase [Post 99.2 1.5E-11 3.3E-16 130.3 6.1 160 629-848 92-271 (386)
307 KOG0651 26S proteasome regulat 99.2 6.1E-11 1.3E-15 122.2 10.0 129 629-783 132-282 (388)
308 PRK10865 protein disaggregatio 99.2 9.7E-10 2.1E-14 134.8 22.3 183 289-493 567-807 (857)
309 PF13177 DNA_pol3_delta2: DNA 99.2 9.9E-11 2.1E-15 115.2 10.7 142 294-458 1-162 (162)
310 TIGR02030 BchI-ChlI magnesium 99.2 1.7E-10 3.7E-15 126.0 13.7 163 289-468 3-217 (337)
311 PRK14950 DNA polymerase III su 99.2 5.5E-11 1.2E-15 140.4 10.5 134 629-781 16-159 (585)
312 KOG0991 Replication factor C, 99.2 5.8E-11 1.3E-15 117.5 8.7 136 611-786 14-157 (333)
313 PRK13531 regulatory ATPase Rav 99.2 2.9E-10 6.2E-15 127.4 15.1 154 290-468 20-192 (498)
314 PRK05707 DNA polymerase III su 99.2 5.8E-10 1.3E-14 121.9 16.9 168 307-511 17-205 (328)
315 PRK06871 DNA polymerase III su 99.2 1.1E-10 2.5E-15 126.4 11.1 160 631-846 4-174 (325)
316 PRK08769 DNA polymerase III su 99.2 1.1E-10 2.3E-15 126.5 10.4 162 630-847 5-181 (319)
317 PRK14970 DNA polymerase III su 99.2 1.4E-10 3.1E-15 130.1 11.5 159 614-847 7-176 (367)
318 PRK14971 DNA polymerase III su 99.2 1.2E-10 2.6E-15 137.2 11.1 158 629-847 17-189 (614)
319 KOG0743 AAA+-type ATPase [Post 99.1 2.3E-10 5E-15 124.7 12.2 135 310-469 234-382 (457)
320 cd00009 AAA The AAA+ (ATPases 99.1 5.4E-10 1.2E-14 107.1 12.9 150 633-837 2-151 (151)
321 TIGR03346 chaperone_ClpB ATP-d 99.1 1.6E-09 3.4E-14 133.5 19.9 181 290-492 565-803 (852)
322 COG0470 HolB ATPase involved i 99.1 2.8E-10 6E-15 125.5 12.0 145 630-841 2-171 (325)
323 PF01078 Mg_chelatase: Magnesi 99.1 5E-11 1.1E-15 119.3 5.3 128 289-434 2-160 (206)
324 PRK08769 DNA polymerase III su 99.1 1.3E-09 2.7E-14 118.2 16.6 180 297-510 11-209 (319)
325 KOG0745 Putative ATP-dependent 99.1 1E-09 2.2E-14 117.8 15.3 174 310-494 225-488 (564)
326 TIGR02974 phageshock_pspF psp 99.1 3.2E-10 7E-15 124.4 11.8 180 292-491 1-212 (329)
327 COG0714 MoxR-like ATPases [Gen 99.1 7.6E-10 1.6E-14 122.1 14.4 152 291-467 25-200 (329)
328 PRK10733 hflB ATP-dependent me 99.1 3.2E-10 6.9E-15 135.2 12.1 128 661-848 187-332 (644)
329 PRK06090 DNA polymerase III su 99.1 2.9E-10 6.4E-15 122.9 10.5 160 630-847 4-176 (319)
330 TIGR00678 holB DNA polymerase 99.1 6.1E-10 1.3E-14 112.7 12.0 140 660-847 15-164 (188)
331 TIGR02031 BchD-ChlD magnesium 99.1 2.6E-10 5.7E-15 134.2 10.5 142 659-839 16-161 (589)
332 PRK11331 5-methylcytosine-spec 99.1 7.2E-10 1.6E-14 123.3 13.2 151 289-457 174-358 (459)
333 PRK05707 DNA polymerase III su 99.1 2.4E-10 5.1E-15 124.9 9.4 138 661-846 24-173 (328)
334 cd00009 AAA The AAA+ (ATPases 99.1 8.7E-10 1.9E-14 105.6 12.3 144 293-455 1-150 (151)
335 PRK07993 DNA polymerase III su 99.1 2.9E-10 6.3E-15 124.5 9.9 160 631-846 4-175 (334)
336 TIGR01817 nifA Nif-specific re 99.1 3E-10 6.4E-15 133.6 10.2 186 285-491 191-407 (534)
337 PRK07993 DNA polymerase III su 99.1 3.1E-09 6.6E-14 116.6 17.3 177 297-511 9-206 (334)
338 PHA02244 ATPase-like protein 99.1 8.2E-10 1.8E-14 119.6 12.5 124 309-459 117-263 (383)
339 KOG0744 AAA+-type ATPase [Post 99.1 6.9E-11 1.5E-15 122.4 4.0 136 662-848 180-337 (423)
340 TIGR03420 DnaA_homol_Hda DnaA 99.1 4.1E-10 9E-15 117.4 9.6 144 633-847 21-168 (226)
341 smart00763 AAA_PrkA PrkA AAA d 99.1 9.4E-10 2E-14 119.3 12.5 150 629-781 51-286 (361)
342 COG1221 PspF Transcriptional r 99.1 5.4E-10 1.2E-14 122.7 10.7 206 288-518 76-310 (403)
343 KOG0732 AAA+-type ATPase conta 99.1 3.8E-10 8.3E-15 134.6 9.9 160 629-849 265-449 (1080)
344 PRK08903 DnaA regulatory inact 99.1 7.6E-10 1.6E-14 115.6 11.1 121 661-847 44-166 (227)
345 PF01637 Arch_ATPase: Archaeal 99.1 6.5E-10 1.4E-14 116.0 10.6 194 292-496 1-227 (234)
346 KOG2035 Replication factor C, 99.1 8E-10 1.7E-14 112.4 10.6 149 614-787 3-172 (351)
347 TIGR00764 lon_rel lon-related 99.1 8.4E-10 1.8E-14 130.2 12.5 57 725-781 211-277 (608)
348 PRK06964 DNA polymerase III su 99.0 7.7E-10 1.7E-14 120.8 11.1 157 632-847 4-200 (342)
349 COG2204 AtoC Response regulato 99.0 1.3E-09 2.7E-14 121.9 12.8 189 288-490 139-352 (464)
350 TIGR02442 Cob-chelat-sub cobal 99.0 2.9E-09 6.3E-14 126.9 16.3 160 289-468 3-212 (633)
351 KOG0740 AAA+-type ATPase [Post 99.0 4.9E-10 1.1E-14 123.3 8.8 131 627-782 151-300 (428)
352 PF07724 AAA_2: AAA domain (Cd 99.0 2.9E-10 6.3E-15 112.6 6.4 112 310-434 2-131 (171)
353 PRK11608 pspF phage shock prot 99.0 1.2E-09 2.7E-14 119.9 11.8 178 289-491 5-219 (326)
354 PTZ00112 origin recognition co 99.0 7.2E-10 1.6E-14 129.2 10.1 175 628-848 754-946 (1164)
355 KOG1942 DNA helicase, TBP-inte 99.0 1.4E-09 3E-14 111.1 10.7 78 733-848 298-377 (456)
356 TIGR02928 orc1/cdc6 family rep 99.0 1.8E-09 3.8E-14 121.3 12.5 174 629-848 15-209 (365)
357 KOG1942 DNA helicase, TBP-inte 99.0 7.9E-09 1.7E-13 105.7 15.7 112 383-516 297-417 (456)
358 COG3604 FhlA Transcriptional r 99.0 1.1E-09 2.4E-14 120.3 9.9 188 288-491 221-435 (550)
359 PRK06871 DNA polymerase III su 99.0 8.5E-09 1.8E-13 111.9 16.6 147 298-468 10-177 (325)
360 TIGR00764 lon_rel lon-related 99.0 4E-09 8.7E-14 124.4 15.2 122 382-519 217-373 (608)
361 COG2607 Predicted ATPase (AAA+ 99.0 1.2E-08 2.5E-13 102.3 15.8 167 288-488 58-253 (287)
362 KOG0741 AAA+-type ATPase [Post 99.0 3.3E-10 7.2E-15 123.9 5.0 129 662-849 259-412 (744)
363 PRK15429 formate hydrogenlyase 99.0 4.9E-09 1.1E-13 126.9 15.7 185 287-491 373-588 (686)
364 TIGR03015 pepcterm_ATPase puta 99.0 2.5E-08 5.5E-13 106.9 19.5 171 309-497 41-232 (269)
365 PF00158 Sigma54_activat: Sigm 99.0 5.7E-09 1.2E-13 103.1 13.1 139 292-454 1-167 (168)
366 PRK13765 ATP-dependent proteas 99.0 1.7E-09 3.7E-14 126.9 10.8 58 725-782 220-287 (637)
367 PRK00411 cdc6 cell division co 99.0 4.2E-09 9.2E-14 119.5 13.5 172 629-848 30-217 (394)
368 TIGR02329 propionate_PrpR prop 99.0 6.4E-09 1.4E-13 120.4 14.9 178 287-488 209-419 (526)
369 PRK15424 propionate catabolism 99.0 5.7E-09 1.2E-13 120.7 14.2 183 288-487 217-433 (538)
370 COG4650 RtcR Sigma54-dependent 98.9 1.7E-09 3.7E-14 110.4 8.3 150 627-784 182-335 (531)
371 COG3829 RocR Transcriptional r 98.9 1.9E-09 4.2E-14 120.1 9.3 178 287-490 242-457 (560)
372 PF07728 AAA_5: AAA domain (dy 98.9 1.1E-09 2.3E-14 105.2 6.0 111 313-449 1-139 (139)
373 PRK06964 DNA polymerase III su 98.9 8.8E-09 1.9E-13 112.6 13.8 151 299-468 10-202 (342)
374 PRK06090 DNA polymerase III su 98.9 1.5E-08 3.2E-13 109.8 15.3 147 298-467 11-177 (319)
375 PRK06893 DNA replication initi 98.9 3.7E-09 8.1E-14 110.3 10.5 127 661-848 41-171 (229)
376 PRK05022 anaerobic nitric oxid 98.9 6E-09 1.3E-13 121.6 13.2 183 288-491 185-399 (509)
377 PRK05917 DNA polymerase III su 98.9 4E-09 8.6E-14 112.0 10.4 144 637-839 5-155 (290)
378 PRK08727 hypothetical protein; 98.9 6.7E-09 1.5E-13 108.7 12.0 125 661-848 43-172 (233)
379 smart00350 MCM minichromosome 98.9 7.2E-09 1.6E-13 120.6 13.2 205 290-518 203-454 (509)
380 KOG0743 AAA+-type ATPase [Post 98.9 3.2E-09 6.8E-14 116.0 9.4 121 662-847 238-379 (457)
381 PF05673 DUF815: Protein of un 98.9 1.1E-08 2.4E-13 104.7 12.4 175 629-848 27-204 (249)
382 PRK11388 DNA-binding transcrip 98.9 1.3E-08 2.8E-13 122.5 15.2 176 288-491 323-533 (638)
383 KOG0990 Replication factor C, 98.9 9.2E-10 2E-14 114.5 4.3 161 610-845 27-197 (360)
384 smart00763 AAA_PrkA PrkA AAA d 98.9 2.3E-08 4.9E-13 108.7 15.2 96 383-492 237-348 (361)
385 COG1474 CDC6 Cdc6-related prot 98.9 5.9E-09 1.3E-13 115.4 10.9 173 629-848 17-200 (366)
386 PRK08084 DNA replication initi 98.9 7.7E-09 1.7E-13 108.4 10.7 127 661-848 47-177 (235)
387 PRK10820 DNA-binding transcrip 98.9 1.1E-08 2.5E-13 119.3 12.7 180 287-490 201-415 (520)
388 PRK04132 replication factor C 98.9 5.9E-09 1.3E-13 125.1 10.1 127 658-847 563-698 (846)
389 PRK08699 DNA polymerase III su 98.9 7.2E-09 1.6E-13 113.2 9.4 156 632-845 4-179 (325)
390 PRK08181 transposase; Validate 98.8 1.1E-08 2.3E-13 108.5 10.0 165 262-458 66-243 (269)
391 KOG2680 DNA helicase TIP49, TB 98.8 4.6E-08 9.9E-13 100.5 13.9 114 383-518 289-410 (454)
392 COG1239 ChlI Mg-chelatase subu 98.8 6.4E-08 1.4E-12 105.4 15.5 161 289-471 16-233 (423)
393 PTZ00111 DNA replication licen 98.8 3.8E-08 8.2E-13 117.5 14.9 162 290-471 450-658 (915)
394 PF07726 AAA_3: ATPase family 98.8 6.4E-10 1.4E-14 102.2 -0.0 108 313-450 1-130 (131)
395 PRK06526 transposase; Provisio 98.8 8.8E-09 1.9E-13 108.6 8.4 163 261-460 58-237 (254)
396 PRK13765 ATP-dependent proteas 98.8 9.8E-08 2.1E-12 112.4 17.9 123 382-520 226-383 (637)
397 PRK07276 DNA polymerase III su 98.8 1.8E-08 3.8E-13 107.5 10.7 156 633-847 6-171 (290)
398 COG0606 Predicted ATPase with 98.8 2.7E-09 5.9E-14 117.4 4.5 148 288-461 177-383 (490)
399 TIGR02031 BchD-ChlD magnesium 98.8 9.1E-08 2E-12 112.9 17.0 161 308-494 13-217 (589)
400 KOG2680 DNA helicase TIP49, TB 98.8 1.9E-08 4.1E-13 103.3 9.5 79 733-849 290-369 (454)
401 PRK12377 putative replication 98.8 2.5E-08 5.4E-13 104.5 10.4 115 310-449 100-222 (248)
402 PRK05642 DNA replication initi 98.8 3.6E-08 7.9E-13 103.2 11.0 126 661-848 47-176 (234)
403 TIGR02915 PEP_resp_reg putativ 98.8 5E-08 1.1E-12 112.6 12.8 183 288-491 137-351 (445)
404 PRK08699 DNA polymerase III su 98.8 1.1E-07 2.4E-12 104.0 14.6 139 311-467 21-182 (325)
405 TIGR00362 DnaA chromosomal rep 98.7 2.4E-08 5.2E-13 113.5 9.4 135 661-848 138-278 (405)
406 PRK12377 putative replication 98.7 3.1E-08 6.7E-13 103.8 9.2 106 661-786 103-210 (248)
407 TIGR00368 Mg chelatase-related 98.7 1.5E-08 3.3E-13 116.5 7.3 150 288-461 190-395 (499)
408 PRK09183 transposase/IS protei 98.7 5.5E-08 1.2E-12 103.2 10.2 112 261-394 62-176 (259)
409 PRK08116 hypothetical protein; 98.7 2.2E-07 4.9E-12 99.0 14.7 136 312-468 115-258 (268)
410 PF14532 Sigma54_activ_2: Sigm 98.7 2E-08 4.4E-13 96.2 6.1 129 293-457 1-136 (138)
411 PRK05818 DNA polymerase III su 98.7 5.5E-08 1.2E-12 101.1 9.5 131 660-838 8-147 (261)
412 smart00382 AAA ATPases associa 98.7 1.2E-07 2.6E-12 89.8 11.0 126 311-456 2-146 (148)
413 PRK12422 chromosomal replicati 98.7 5.9E-08 1.3E-12 110.5 10.1 135 661-848 143-281 (445)
414 COG1484 DnaC DNA replication p 98.7 5.2E-08 1.1E-12 102.9 8.8 110 310-440 104-218 (254)
415 PRK05917 DNA polymerase III su 98.7 2.8E-07 6.1E-12 98.0 14.3 136 299-457 6-154 (290)
416 PF13173 AAA_14: AAA domain 98.7 6.1E-08 1.3E-12 91.6 8.4 123 312-461 3-126 (128)
417 PF03215 Rad17: Rad17 cell cyc 98.7 2.1E-07 4.6E-12 107.3 14.1 223 277-515 6-269 (519)
418 PF01695 IstB_IS21: IstB-like 98.7 1.8E-08 3.9E-13 100.7 4.7 111 261-394 7-120 (178)
419 PRK00149 dnaA chromosomal repl 98.7 3.5E-08 7.6E-13 113.6 7.7 135 661-848 150-290 (450)
420 PRK13406 bchD magnesium chelat 98.7 8.2E-08 1.8E-12 112.2 10.5 144 659-843 25-174 (584)
421 PF00308 Bac_DnaA: Bacterial d 98.6 5E-08 1.1E-12 100.9 7.3 135 661-848 36-176 (219)
422 PRK10923 glnG nitrogen regulat 98.6 1.1E-07 2.3E-12 110.6 9.9 182 289-491 137-350 (469)
423 PF02861 Clp_N: Clp amino term 98.6 5.7E-08 1.2E-12 76.4 5.3 51 96-146 1-53 (53)
424 PRK08116 hypothetical protein; 98.6 2.1E-07 4.6E-12 99.2 11.2 109 661-787 116-226 (268)
425 PRK14087 dnaA chromosomal repl 98.6 2.3E-07 5E-12 106.1 12.2 136 661-848 143-285 (450)
426 PRK09862 putative ATP-dependen 98.6 9.6E-08 2.1E-12 109.3 8.6 149 288-460 189-391 (506)
427 smart00382 AAA ATPases associa 98.6 2.3E-07 5E-12 87.9 10.0 118 661-781 4-125 (148)
428 PRK07952 DNA replication prote 98.6 2.2E-07 4.7E-12 97.2 10.5 116 312-449 100-221 (244)
429 PF01695 IstB_IS21: IstB-like 98.6 4.5E-08 9.8E-13 97.8 5.2 106 661-788 49-156 (178)
430 PRK14086 dnaA chromosomal repl 98.6 1.5E-07 3.4E-12 108.9 10.2 134 662-848 317-456 (617)
431 PF12775 AAA_7: P-loop contain 98.6 2.7E-07 5.8E-12 98.5 10.9 148 302-474 25-197 (272)
432 PF02861 Clp_N: Clp amino term 98.6 8.2E-08 1.8E-12 75.5 5.0 52 182-233 1-52 (53)
433 PRK14088 dnaA chromosomal repl 98.6 2.1E-07 4.6E-12 106.3 10.5 136 661-848 132-273 (440)
434 PRK07132 DNA polymerase III su 98.6 5.8E-07 1.2E-11 96.8 13.1 150 636-846 3-157 (299)
435 PF06309 Torsin: Torsin; Inte 98.6 1.3E-07 2.9E-12 86.9 6.9 74 618-693 14-89 (127)
436 PRK06526 transposase; Provisio 98.6 1.1E-07 2.3E-12 100.4 7.0 104 661-787 100-206 (254)
437 PF00493 MCM: MCM2/3/5 family 98.5 6.7E-08 1.5E-12 106.3 5.2 185 623-839 18-209 (331)
438 PRK07132 DNA polymerase III su 98.5 1.6E-06 3.6E-11 93.3 15.2 164 297-495 3-177 (299)
439 TIGR01818 ntrC nitrogen regula 98.5 3.7E-07 8E-12 105.9 10.6 182 290-492 134-347 (463)
440 KOG2227 Pre-initiation complex 98.5 1.7E-05 3.6E-10 87.2 22.3 213 279-517 142-379 (529)
441 PRK08181 transposase; Validate 98.5 1.8E-07 3.8E-12 99.3 7.0 105 661-787 108-214 (269)
442 PRK15115 response regulator Gl 98.5 2.9E-07 6.4E-12 106.2 9.3 180 291-491 135-346 (444)
443 PF13401 AAA_22: AAA domain; P 98.5 3.4E-07 7.3E-12 86.6 7.6 109 310-432 3-125 (131)
444 COG2607 Predicted ATPase (AAA+ 98.5 1E-06 2.3E-11 88.6 11.0 172 629-848 60-236 (287)
445 PRK07276 DNA polymerase III su 98.5 2E-06 4.4E-11 91.8 13.9 144 295-466 7-171 (290)
446 KOG1808 AAA ATPase containing 98.5 2E-06 4.2E-11 109.0 15.6 141 309-468 438-597 (1856)
447 PRK11361 acetoacetate metaboli 98.5 3.8E-07 8.2E-12 105.7 8.9 179 289-491 142-355 (457)
448 TIGR00602 rad24 checkpoint pro 98.4 5.2E-07 1.1E-11 106.0 9.7 63 612-683 72-134 (637)
449 KOG1970 Checkpoint RAD17-RFC c 98.4 3.8E-06 8.2E-11 93.7 15.7 204 276-498 68-310 (634)
450 PRK06620 hypothetical protein; 98.4 6.6E-07 1.4E-11 92.2 8.9 23 661-683 46-68 (214)
451 KOG1051 Chaperone HSP104 and r 98.4 9.4E-07 2E-11 105.7 11.0 121 291-433 563-711 (898)
452 PRK06835 DNA replication prote 98.4 5.6E-07 1.2E-11 98.3 8.4 108 660-786 184-293 (329)
453 KOG0478 DNA replication licens 98.4 5.8E-07 1.3E-11 102.0 8.6 186 621-841 421-616 (804)
454 PRK06835 DNA replication prote 98.4 1.9E-06 4E-11 94.3 12.4 128 310-458 182-318 (329)
455 PRK15455 PrkA family serine pr 98.4 2.2E-06 4.9E-11 97.5 13.0 149 628-781 75-305 (644)
456 PRK07952 DNA replication prote 98.4 1E-06 2.2E-11 92.2 9.0 108 661-787 101-210 (244)
457 PRK08939 primosomal protein Dn 98.4 1E-06 2.2E-11 95.6 8.8 100 310-433 155-261 (306)
458 COG1484 DnaC DNA replication p 98.4 1.3E-06 2.9E-11 92.2 9.3 106 661-787 107-214 (254)
459 COG1241 MCM2 Predicted ATPase 98.3 1.3E-06 2.7E-11 102.4 9.7 180 622-836 279-467 (682)
460 KOG1514 Origin recognition com 98.3 5.1E-05 1.1E-09 87.2 22.1 220 272-517 381-628 (767)
461 PF12775 AAA_7: P-loop contain 98.3 9.5E-07 2.1E-11 94.3 8.0 148 661-847 35-189 (272)
462 PRK09087 hypothetical protein; 98.3 1.9E-06 4.2E-11 89.5 10.0 116 661-848 46-163 (226)
463 KOG0480 DNA replication licens 98.3 2.7E-06 5.9E-11 95.9 11.3 187 619-839 335-530 (764)
464 PHA00729 NTP-binding motif con 98.3 3.4E-06 7.3E-11 86.4 10.7 125 302-468 8-138 (226)
465 PF05729 NACHT: NACHT domain 98.3 9.5E-06 2.1E-10 79.7 13.6 144 314-471 3-164 (166)
466 TIGR03015 pepcterm_ATPase puta 98.3 2.7E-06 5.9E-11 91.2 10.0 147 661-847 45-201 (269)
467 PF13173 AAA_14: AAA domain 98.3 4.2E-06 9E-11 79.1 9.8 120 662-843 5-127 (128)
468 PRK06921 hypothetical protein; 98.3 3.7E-06 8.1E-11 89.6 10.4 124 310-449 116-240 (266)
469 PRK05818 DNA polymerase III su 98.3 8.3E-06 1.8E-10 85.0 12.1 122 312-458 8-148 (261)
470 PF13191 AAA_16: AAA ATPase do 98.2 1.6E-06 3.4E-11 87.1 6.4 48 291-338 1-51 (185)
471 PF13401 AAA_22: AAA domain; P 98.2 1.2E-06 2.7E-11 82.7 5.4 109 661-782 6-126 (131)
472 PRK09183 transposase/IS protei 98.2 1.8E-06 4E-11 91.6 6.9 104 661-787 104-211 (259)
473 PRK10365 transcriptional regul 98.2 2.9E-06 6.2E-11 97.9 9.0 180 291-491 140-351 (441)
474 PRK15455 PrkA family serine pr 98.2 9.1E-06 2E-10 92.7 12.3 50 288-337 74-129 (644)
475 PRK13406 bchD magnesium chelat 98.2 9.2E-06 2E-10 95.2 12.2 177 310-519 24-232 (584)
476 PRK08939 primosomal protein Dn 98.2 4.9E-06 1.1E-10 90.3 9.3 107 661-788 158-267 (306)
477 PRK06921 hypothetical protein; 98.2 1.9E-06 4.2E-11 91.7 6.0 104 661-787 119-230 (266)
478 KOG1969 DNA replication checkp 98.2 8.4E-06 1.8E-10 93.6 10.9 78 661-756 328-412 (877)
479 PF00931 NB-ARC: NB-ARC domain 98.2 7.9E-06 1.7E-10 88.4 10.1 173 295-495 1-194 (287)
480 PF12774 AAA_6: Hydrolytic ATP 98.1 1.4E-05 3E-10 83.1 11.1 100 662-782 35-144 (231)
481 KOG2228 Origin recognition com 98.1 2.1E-05 4.5E-10 83.1 12.0 165 291-470 25-219 (408)
482 TIGR02688 conserved hypothetic 98.1 3.7E-05 7.9E-10 85.1 14.2 135 295-460 192-357 (449)
483 PF00910 RNA_helicase: RNA hel 98.1 5.7E-06 1.2E-10 75.4 6.5 94 662-781 1-107 (107)
484 PRK06581 DNA polymerase III su 98.1 2.5E-05 5.5E-10 79.6 11.2 127 661-844 17-154 (263)
485 COG1618 Predicted nucleotide k 98.1 5.2E-05 1.1E-09 72.1 12.0 141 312-472 6-174 (179)
486 PRK14700 recombination factor 98.0 1E-05 2.3E-10 85.3 8.0 91 416-515 1-93 (300)
487 COG3267 ExeA Type II secretory 98.0 0.00018 3.9E-09 73.8 16.4 177 309-496 49-238 (269)
488 COG3284 AcoR Transcriptional a 98.0 5.4E-06 1.2E-10 94.7 6.1 180 293-490 316-518 (606)
489 KOG2227 Pre-initiation complex 98.0 8.6E-06 1.9E-10 89.4 6.5 174 629-848 150-335 (529)
490 PF05729 NACHT: NACHT domain 98.0 2.1E-05 4.5E-10 77.2 7.9 111 662-782 3-130 (166)
491 PF01637 Arch_ATPase: Archaeal 98.0 1E-05 2.2E-10 84.2 6.0 44 631-683 1-44 (234)
492 COG0593 DnaA ATPase involved i 97.9 3.5E-05 7.6E-10 85.5 10.0 134 661-848 115-254 (408)
493 KOG0478 DNA replication licens 97.9 3.2E-05 7E-10 88.2 9.5 160 291-473 430-629 (804)
494 PF12774 AAA_6: Hydrolytic ATP 97.9 3.9E-05 8.4E-10 79.7 9.5 122 312-466 33-176 (231)
495 PF08298 AAA_PrkA: PrkA AAA do 97.9 3.9E-05 8.5E-10 82.9 9.5 68 424-492 275-345 (358)
496 PRK06581 DNA polymerase III su 97.9 0.00018 3.9E-09 73.5 13.7 151 300-470 3-161 (263)
497 COG1241 MCM2 Predicted ATPase 97.9 4.8E-05 1E-09 89.4 10.5 206 289-515 285-539 (682)
498 COG3283 TyrR Transcriptional r 97.9 0.00014 3.1E-09 77.2 12.1 176 288-489 202-409 (511)
499 COG3854 SpoIIIAA ncharacterize 97.8 0.00015 3.2E-09 72.8 11.5 90 302-394 128-230 (308)
500 TIGR02688 conserved hypothetic 97.8 4.2E-05 9E-10 84.6 8.2 99 661-783 211-314 (449)
No 1
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-118 Score=1029.24 Aligned_cols=696 Identities=49% Similarity=0.772 Sum_probs=613.4
Q ss_pred HhhHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhcCCChHHHHHHCCCCHHHHHHHHHHHhhhCCCCCCcchhccCCCC
Q 003088 84 RFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAVVSIWHSTNNQDTDDAAAQGKPF 163 (849)
Q Consensus 84 rft~~a~~~l~~A~~~A~~~~~~~v~~eHLLlaLl~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (849)
+||+++++++..|+.+|+.++|.+|++||||++|+.++.+..++..+|++++.++..+...+++.+.. .
T Consensus 1 ~~~~~~~~~l~~a~~~a~~~~h~~~~~eHll~~ll~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~-----------~ 69 (786)
T COG0542 1 KLTERAQKALELAQELARMRRHEYVTPEHLLLALLDQPKGDELLNLCGIDLDKLRQELEEFIDKLPKV-----------L 69 (786)
T ss_pred CcCHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHcCCchHHHHHHcCCCHHHHHHHHHHHHhccCCC-----------C
Confidence 59999999999999999999999999999999999998877999999999999999999999987641 1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHhhhcCCchhhHHHHhhcCCHHHHHHHHHHhhhhcccccCCC
Q 003088 164 SSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGRE 243 (849)
Q Consensus 164 ~~~~~~~~s~~~~~vl~~A~~~a~~~g~~~I~~ehlLlall~~~~~~a~~iL~~~gv~~~~l~~~~~~~~~~~~~~~~~~ 243 (849)
+ . +.+|+.++++++.|..+|+.+|+.||+++|||+|++.++++.+..+|...|++...+.+ +...+.+.....
T Consensus 70 ~--~-~~~s~~~~~~~~~a~~~a~~~~~~~v~~~~llla~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~--- 142 (786)
T COG0542 70 G--S-PYLSPRLKRVLERAWLLAQSLGDEYVSTEHLLLALLNEPESVAAYILKKLGVTRKDVEE-LIEELRGGNEVD--- 142 (786)
T ss_pred C--C-CCCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhcccchHHHHHHHhccCCHHHHHH-HHHHHhcccccC---
Confidence 1 2 78899999999999999999999999999999999999999999999999999998844 444443221100
Q ss_pred CccccccccccccccccccCCCCCCcchhHHhhhhhhHHHHhhcCCCCccccHHHHHHHHHHHhcCCCCCCeEeCCCCCh
Q 003088 244 PSLAKGVRENSISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVG 323 (849)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~l~~iiG~~~~i~~l~~~l~~~~~~niLL~GppGtG 323 (849)
++ +.......|++|+.|+++.++.+++||+|||++++++++++|+|+++||++|+|+||||
T Consensus 143 -------------~~------~~~~~~~~L~~y~~dlt~~Ar~gklDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVG 203 (786)
T COG0542 143 -------------SK------NAEEDQDALEKYTRDLTELAREGKLDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVG 203 (786)
T ss_pred -------------Cc------ccccchhhHHHHhhhhHHHHhcCCCCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCC
Confidence 00 00123478999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCC
Q 003088 324 KTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRG 403 (849)
Q Consensus 324 KT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~ 403 (849)
||++|++||.++..++||..+.+++++++|++++++|++|+|+||++++.+++++++.++.||||||+|.++++|..
T Consensus 204 KTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~--- 280 (786)
T COG0542 204 KTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGAT--- 280 (786)
T ss_pred HHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcc---
Confidence 99999999999999999999999999999999999999999999999999999999988999999999999998876
Q ss_pred CCCc-cHHHHHHHhhhhcCCCeEEEEccChHHHHHHhhccHHHHhccccEEecCCCHHHHHHHHHHHHHHHHhhcCCccC
Q 003088 404 NKGT-GLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFT 482 (849)
Q Consensus 404 ~~~~-~~~~~~~L~~~le~~~i~vI~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~ 482 (849)
++ .+|+.|+|+|.|++|.+.||||||.+||++|++.|+||.|||++|.+.+||.++.+.||+++.++|+.||++.|+
T Consensus 281 --~G~a~DAaNiLKPaLARGeL~~IGATT~~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~ 358 (786)
T COG0542 281 --EGGAMDAANLLKPALARGELRCIGATTLDEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLKERYEAHHGVRIT 358 (786)
T ss_pred --cccccchhhhhHHHHhcCCeEEEEeccHHHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHHHHHHHccCceec
Confidence 23 599999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcccccCcchhhHHHHHHHHhhHHHHhhhhchhhhhhhhcCCCCchHHHHHHHHHHhHHHHHhccc---
Q 003088 483 LEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRL--- 559 (849)
Q Consensus 483 ~~~l~~~a~ls~~~~~~r~~p~~ai~ll~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--- 559 (849)
++++.+++.++++|+++|++||||||++|+||++.++... .|.+. ++...++.++....+.....+.
T Consensus 359 D~Al~aAv~LS~RYI~dR~LPDKAIDLiDeA~a~~~l~~~-~p~~l---------~~~~~~~~~l~~e~~~~~~e~~~~~ 428 (786)
T COG0542 359 DEALVAAVTLSDRYIPDRFLPDKAIDLLDEAGARVRLEID-KPEEL---------DELERELAQLEIEKEALEREQDEKE 428 (786)
T ss_pred HHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHhccc-CCcch---------hHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 9999999999999999999999999999999999999877 65532 2222222222222211111111
Q ss_pred ---ccchhhhccCCcchhHHhccCCCCCCCCCCCccCHhHHHHHHHhHhCCCcccCCHHHHHHHHHHHHHHhccccccHH
Q 003088 560 ---KYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDE 636 (849)
Q Consensus 560 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~i~Gq~~ 636 (849)
.+....+.. ......++++ .. .|+.++|+++++.|+|+|+.++...+...+.++++.|.++|+||++
T Consensus 429 k~~~~~~~~~~~--~~~~~~~~~~-------~~-~v~~~~Ia~vv~~~TgIPv~~l~~~e~~kll~le~~L~~rViGQd~ 498 (786)
T COG0542 429 KKLIDEIIKLKE--GRIPELEKEL-------EA-EVDEDDIAEVVARWTGIPVAKLLEDEKEKLLNLERRLKKRVIGQDE 498 (786)
T ss_pred HHHHHHHHHHhh--hhhhhHHHHH-------hh-ccCHHHHHHHHHHHHCCChhhhchhhHHHHHHHHHHHhcceeChHH
Confidence 000000000 0000011111 01 2999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccccccCCCCCccc
Q 003088 637 AVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVG 716 (849)
Q Consensus 637 ~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~vg 716 (849)
++..+.+++++++.|+..|++|.+++||.||+|+|||++|++||..+|+++.+++++|||+|+++|++++|+|+||||||
T Consensus 499 AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVG 578 (786)
T COG0542 499 AVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVG 578 (786)
T ss_pred HHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCcchhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCchhhhcccCCcccc
Q 003088 717 YEEGGLLTEAIRRRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKGRHGSIGF 796 (849)
Q Consensus 717 ~~~~~~l~~~i~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf 796 (849)
|+++|.|+++++++|++||+||||+|+||+++|.|||+||+|+++|++|++++|+|++||||||.|+..+.+.. ++
T Consensus 579 yeeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~----~~ 654 (786)
T COG0542 579 YEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDA----DG 654 (786)
T ss_pred eccccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhhc----cc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998876542 11
Q ss_pred ccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHHHccccCC
Q 003088 797 LLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQLPLI 849 (849)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~I~~l 849 (849)
......+.+...++..++++|+|||++|+|.+|+|.||+++++.+|+++
T Consensus 655 ----~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~ 703 (786)
T COG0542 655 ----DDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDL 703 (786)
T ss_pred ----cccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHH
Confidence 1123456678899999999999999999999999999999999999863
No 2
>CHL00095 clpC Clp protease ATP binding subunit
Probab=100.00 E-value=5e-100 Score=923.89 Aligned_cols=720 Identities=50% Similarity=0.812 Sum_probs=620.3
Q ss_pred hHHHhhHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhcCCC--hHHHHHHCCCCHHHHHHHHHHHhhhCCCCCCcchhc
Q 003088 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDR--HPNGFLESGITIDKAREAVVSIWHSTNNQDTDDAAA 158 (849)
Q Consensus 81 ~ferft~~a~~~l~~A~~~A~~~~~~~v~~eHLLlaLl~~~~--~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (849)
||+|||++|+++|..|+.+|++++|.+|+|||||+|||.+++ +.++|..+|+++..++.++...+++.+.
T Consensus 1 m~~rfT~~a~~vL~~A~~~A~~~~h~~V~~EHLLLaLL~~~~~~a~~iL~~~gid~~~l~~~l~~~l~~~~~-------- 72 (821)
T CHL00095 1 MFERFTEKAIKVIMLSQEEARRLGHNFVGTEQILLGLIGEGTGIAARALKSMGVTLKDARIEVEKIIGRGTG-------- 72 (821)
T ss_pred ChhhHhHHHHHHHHHHHHHHHHhCCCcCcHHHHHHHHHhCCCchHHHHHHHcCCCHHHHHHHHHHHHhcCCC--------
Confidence 899999999999999999999999999999999999999876 6889999999999999999988876431
Q ss_pred cCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHhhhcCCchhhHHHHhhcCCHHHHHHHHHHhhhhccc
Q 003088 159 QGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELA 238 (849)
Q Consensus 159 ~~~~~~~~~~~~~s~~~~~vl~~A~~~a~~~g~~~I~~ehlLlall~~~~~~a~~iL~~~gv~~~~l~~~~~~~~~~~~~ 238 (849)
....+++||+.++++|+.|..+|..+|+.+|+++|||+||++++++.+.++|+.+|++...+...+...+.+...
T Consensus 73 -----~~~~~~~~S~~~~~vL~~A~~~A~~~~~~~I~~eHLLlALL~~~ds~a~~iL~~~gvd~~~L~~~l~~~l~~~~e 147 (821)
T CHL00095 73 -----FVAVEIPFTPRAKRVLEMSLEEARDLGHNYIGTEHLLLALLEEGEGVAARVLENLGVDLSKIRSLILNLIGEIIE 147 (821)
T ss_pred -----CCccccccCHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHhCCCchHHHHHHHcCCCHHHHHHHHHHHhccccc
Confidence 122468999999999999999999999999999999999999988889999999999999988877665421100
Q ss_pred ccCCCCccccccccccccccccccCCCCCCcchhHHhhhhhhHHHHhhcCCCCccccHHHHHHHHHHHhcCCCCCCeEeC
Q 003088 239 KEGREPSLAKGVRENSISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318 (849)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~l~~iiG~~~~i~~l~~~l~~~~~~niLL~G 318 (849)
.. . . .+. .....+.|++||.||+++++.+++++++||++++++++++|+++.++|++|+|
T Consensus 148 ~~--~----~-------~~~-------~~~~~~~l~~~~~~l~~~a~~~~~~~~igr~~ei~~~~~~L~r~~~~n~lL~G 207 (821)
T CHL00095 148 AI--L----G-------AEQ-------SRSKTPTLEEFGTNLTKEAIDGNLDPVIGREKEIERVIQILGRRTKNNPILIG 207 (821)
T ss_pred cc--c----c-------ccc-------ccccchHHHHHHHHHHHHHHcCCCCCCCCcHHHHHHHHHHHcccccCCeEEEC
Confidence 00 0 0 000 00123589999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCC
Q 003088 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSG 398 (849)
Q Consensus 319 ppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~ 398 (849)
|||||||++|+++|+++..+++|..+.+++++.+|++.+++|.+++|++|++++.++++++..+++||||||+|.+++.+
T Consensus 208 ~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g 287 (821)
T CHL00095 208 EPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAG 287 (821)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999988888999999999999876
Q ss_pred CCCCCCCCccHHHHHHHhhhhcCCCeEEEEccChHHHHHHhhccHHHHhccccEEecCCCHHHHHHHHHHHHHHHHhhcC
Q 003088 399 TVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHN 478 (849)
Q Consensus 399 ~~~~~~~~~~~~~~~~L~~~le~~~i~vI~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL~~~~~~~~~~~~ 478 (849)
.. +++.++.++|++.+++|.+.|||+||.++|+++++.|++|.+||+.|.+++|+.++...|++.+...|+.+++
T Consensus 288 ~~-----~g~~~~a~lLkp~l~rg~l~~IgaTt~~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l~~~~e~~~~ 362 (821)
T CHL00095 288 AA-----EGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGLRSRYEKHHN 362 (821)
T ss_pred CC-----CCcccHHHHhHHHHhCCCcEEEEeCCHHHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHHHHHHHHHcC
Confidence 53 3456899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCHHHHHHHHHhhhcccccCcchhhHHHHHHHHhhHHHHhhhhchhhhhhhhcCCCCchHHHHHHHHHHhHHHHHhcc
Q 003088 479 CKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558 (849)
Q Consensus 479 ~~i~~~~l~~~a~ls~~~~~~r~~p~~ai~ll~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (849)
+.++++++..++.++++|+++|++|++|++++|+||+.+++.....+... +.++.+++.+....+......
T Consensus 363 v~i~deal~~i~~ls~~yi~~r~lPdkaidlld~a~a~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~ 433 (821)
T CHL00095 363 LSISDKALEAAAKLSDQYIADRFLPDKAIDLLDEAGSRVRLINSRLPPAA---------RELDKELREILKDKDEAIREQ 433 (821)
T ss_pred CCCCHHHHHHHHHHhhccCccccCchHHHHHHHHHHHHHHhhccCCchhH---------HHHHHHHHHHHHHHHHHHhCc
Confidence 99999999999999999999999999999999999999988665444321 223334444433333222222
Q ss_pred cccchhhhccCCc---chhHHhccCCCCC--CCCCCCccCHhHHHHHHHhHhCCCcccCCHHHHHHHHHHHHHHhccccc
Q 003088 559 LKYDDVVASMGDT---SEIVVESSLPSAS--DDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIG 633 (849)
Q Consensus 559 ~~~~~~~~~~~~~---~~~~~~~~~~~~~--~~~~~~~v~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~i~G 633 (849)
.++....+..... .........|... .......|+.++|+++++.|+|+|+..+..++..++..+++.|.+.|+|
T Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~tgip~~~~~~~~~~~l~~l~~~L~~~v~G 513 (821)
T CHL00095 434 DFETAKQLRDREMEVRAQIAAIIQSKKTEEEKRLEVPVVTEEDIAEIVSAWTGIPVNKLTKSESEKLLHMEETLHKRIIG 513 (821)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCccCHHHHHHHHHHHHCCCchhhchhHHHHHHHHHHHhcCcCcC
Confidence 2211111111000 0000000001000 1122367999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccccccCCCCC
Q 003088 634 QDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPG 713 (849)
Q Consensus 634 q~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g 713 (849)
|+++++.|..++...+.|+..|.+|.+++||+||+|||||++|++||+.+|+...+++++||+++.+.+.+++++|+|+|
T Consensus 514 Q~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~g 593 (821)
T CHL00095 514 QDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPG 593 (821)
T ss_pred hHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCc
Confidence 99999999999999999999999999999999999999999999999999998899999999999999999999999999
Q ss_pred ccccccCcchhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCchhhhcccCCc
Q 003088 714 YVGYEEGGLLTEAIRRRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKGRHGS 793 (849)
Q Consensus 714 ~vg~~~~~~l~~~i~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~~~~~~~ 793 (849)
|+|+++.+.++++++..|++||+|||||++++++++.|+++||+|+++|..|+++++.|++||+|||.+...+.... ..
T Consensus 594 yvg~~~~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~~-~~ 672 (821)
T CHL00095 594 YVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIETNS-GG 672 (821)
T ss_pred ccCcCccchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCcchHHHHhhc-cc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988776432 36
Q ss_pred cccccccCC--cccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHHHccccC
Q 003088 794 IGFLLEDNE--STSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQLPL 848 (849)
Q Consensus 794 ~gf~~~~~~--~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~I~~ 848 (849)
+||...... ...++.+...++..++++|+|||++|+|.+|+|.||+.+++.+|++
T Consensus 673 ~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~ 729 (821)
T CHL00095 673 LGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAE 729 (821)
T ss_pred cCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHHH
Confidence 888754322 3346778888999999999999999999999999999999999875
No 3
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=100.00 E-value=2.3e-96 Score=885.43 Aligned_cols=725 Identities=37% Similarity=0.573 Sum_probs=594.8
Q ss_pred hhHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhcCCC--hHHHHHHCCCCHHHHHHHHHHHhhhCCCCCCcchhccCCC
Q 003088 85 FTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDR--HPNGFLESGITIDKAREAVVSIWHSTNNQDTDDAAAQGKP 162 (849)
Q Consensus 85 ft~~a~~~l~~A~~~A~~~~~~~v~~eHLLlaLl~~~~--~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (849)
+|++++++|..|+.+|++++|++|+|||||+|||.+++ +..+|..+|++++.++.++...+...+.
T Consensus 1 Lt~~a~~~L~~A~~~A~~~~h~~I~~eHLLlaLL~~~~~~~~~iL~~~Gvd~~~Lr~~le~~l~~~p~------------ 68 (852)
T TIGR03345 1 LNPTSRRALEQAAALCVARGHPEVELEHWLLALLDQPDSDLAAILRHFGVDLGRLKADLARALDKLPR------------ 68 (852)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHhccCcHHHHHHHHcCCCHHHHHHHHHHHhccCCC------------
Confidence 58999999999999999999999999999999999865 5789999999999999999988876542
Q ss_pred CCCCCCCCCCHHHHHHHHHHHH-HHHHcCCCcCCHHHHHHHhhhcCCc--hhhHHHHhh-cCCHHHHHHHHHHhhhhccc
Q 003088 163 FSSAAKMPFSISTKRVFEAAVE-YSRSRGYNFIAPEHIALGLFTVDDG--SAGRVLKRL-GVDVNHLAAVAVSRLQGELA 238 (849)
Q Consensus 163 ~~~~~~~~~s~~~~~vl~~A~~-~a~~~g~~~I~~ehlLlall~~~~~--~a~~iL~~~-gv~~~~l~~~~~~~~~~~~~ 238 (849)
+.+..++||+.++++|+.|.. .+..+|+.+|+++|||+||++++++ .+..++..+ |++.+.+.+.+.+...+...
T Consensus 69 -~~~~~~~~S~~l~~vL~~A~~~~a~~~g~~~I~teHLLlALl~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (852)
T TIGR03345 69 -GNTRTPVFSPHLVELLQEAWLLASLELGDGRIRSGHLLLALLTDPELRRLLGSISPELAKIDREALREALPALVEGSAE 147 (852)
T ss_pred -CCCCCCCcCHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHccccchhHHHHHHHHHhCCCHHHHHHHHHHHhcCCcc
Confidence 112367899999999999997 4667999999999999999988765 566788888 99999887776543221100
Q ss_pred ccCCCCccccccccccccccccccCCCCCCcchhHHhhhhhhHHHHhhcCCCCccccHHHHHHHHHHHhcCCCCCCeEeC
Q 003088 239 KEGREPSLAKGVRENSISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318 (849)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~l~~iiG~~~~i~~l~~~l~~~~~~niLL~G 318 (849)
+....... ......+ .......|++||+||++++|+++++++|||++++++++++|+++.++|++|+|
T Consensus 148 ----~~~~~~~~-~~~~~~~-------~~~~~~~l~~~~~~L~~~~r~~~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG 215 (852)
T TIGR03345 148 ----ASAAAADA-GPAAAAA-------GAAGTSALDQYTTDLTAQAREGKIDPVLGRDDEIRQMIDILLRRRQNNPILTG 215 (852)
T ss_pred ----cccccccc-ccccccc-------cccchhhHHHHhhhHHHHhcCCCCCcccCCHHHHHHHHHHHhcCCcCceeEEC
Confidence 00000000 0000000 00133589999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhccccccchHHHHHHHHHHHHHh-cCCeEEEEcCcchhhhC
Q 003088 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK-SGDVILFIDEVHTLIGS 397 (849)
Q Consensus 319 ppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~~~~~~g~~e~~l~~l~~~~~~-~~~~ILfIDEi~~l~~~ 397 (849)
|||||||++|++||+++..+.+|..+.+.+++.++++.+.++.+++|+++++++.++++++. .+++||||||+|.++++
T Consensus 216 ~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~ 295 (852)
T TIGR03345 216 EAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGA 295 (852)
T ss_pred CCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999999975 46799999999999887
Q ss_pred CCCCCCCCCccHHHHHHHhhhhcCCCeEEEEccChHHHHHHhhccHHHHhccccEEecCCCHHHHHHHHHHHHHHHHhhc
Q 003088 398 GTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHH 477 (849)
Q Consensus 398 ~~~~~~~~~~~~~~~~~L~~~le~~~i~vI~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL~~~~~~~~~~~ 477 (849)
|+. .++.++.++|++++++|.+.||||||.++|++++++|++|.|||+.|.|++|+.+++.+||+++...|+.+|
T Consensus 296 g~~-----~~~~d~~n~Lkp~l~~G~l~~IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~ 370 (852)
T TIGR03345 296 GGQ-----AGQGDAANLLKPALARGELRTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHH 370 (852)
T ss_pred CCc-----cccccHHHHhhHHhhCCCeEEEEecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcC
Confidence 643 345678899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCHHHHHHHHHhhhcccccCcchhhHHHHHHHHhhHHHHhhhhchhhhhh------------hhcCCC------Cch
Q 003088 478 NCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQT------------CILSKP------PDD 539 (849)
Q Consensus 478 ~~~i~~~~l~~~a~ls~~~~~~r~~p~~ai~ll~~a~~~~~~~~~~~~~~~~~------------~~l~~~------~~~ 539 (849)
++.++++++..++.+++||+.++++||+|||++|+||+++++.....+..... ..+.+. ...
T Consensus 371 ~v~i~d~al~~~~~ls~ryi~~r~LPDKAIdlldea~a~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (852)
T TIGR03345 371 GVLILDEAVVAAVELSHRYIPGRQLPDKAVSLLDTACARVALSQNATPAALEDLRRRIAALELELDALEREAALGADHDE 450 (852)
T ss_pred CCeeCHHHHHHHHHHcccccccccCccHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHhhhhccccchHH
Confidence 99999999999999999999999999999999999999998875544432110 011110 000
Q ss_pred ----HHHHHHHHHHhHHHHHhcccccch--------------hhhccCCc------c-hhHHhcc--CCCCCCCCCCCcc
Q 003088 540 ----YWQEIRTVQAMHEVVQGSRLKYDD--------------VVASMGDT------S-EIVVESS--LPSASDDDEPAVV 592 (849)
Q Consensus 540 ----~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~------~-~~~~~~~--~~~~~~~~~~~~v 592 (849)
+..++..+....+. ....+..+. ........ . ....+.. ............|
T Consensus 451 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 529 (852)
T TIGR03345 451 RLAELRAELAALEAELAA-LEARWQQEKELVEAILALRAELEADADAPADDDAALRAQLAELEAALASAQGEEPLVFPEV 529 (852)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhHHHHHHHHHHHHHHHHHhhcccccccee
Confidence 00011111100000 000000000 00000000 0 0000000 0011122344679
Q ss_pred CHhHHHHHHHhHhCCCcccCCHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCch
Q 003088 593 GPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGK 672 (849)
Q Consensus 593 ~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGK 672 (849)
+..+|+++++.|+|+|+.++..++..++.++++.|.+.|+||+++++.+..++..++.|+..|.+|.+++||+|||||||
T Consensus 530 ~~~~i~~vv~~~tgip~~~~~~~e~~~l~~l~~~L~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGK 609 (852)
T TIGR03345 530 DAQAVAEVVADWTGIPVGRMVRDEIEAVLSLPDRLAERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGK 609 (852)
T ss_pred cHHHHHHHHHHHHCCCchhhchhHHHHHHHHHHHhcCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCceeEeeccccccccccccccCCCCCccccccCcchhHHHHhCCCeEEEEeCccccCHHHHHHHH
Q 003088 673 TELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRRRPFTLLLLDEIEKAHPDIFNILL 752 (849)
Q Consensus 673 t~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~i~~~~~~vl~lDEid~l~~~~~~~Ll 752 (849)
|++|++||+.+|+....++.+||+++.+.+.++.|+|+|+||+|+.+++.++++++++|++||+|||||++++++++.|+
T Consensus 610 T~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~g~L~~~v~~~p~svvllDEieka~~~v~~~Ll 689 (852)
T TIGR03345 610 TETALALAELLYGGEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFY 689 (852)
T ss_pred HHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhccccCCCCCcccccccchHHHHHHhCCCcEEEEechhhcCHHHHHHHH
Confidence 99999999999998889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCeeecCCCceeecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccE
Q 003088 753 QVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEV 832 (849)
Q Consensus 753 ~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~ 832 (849)
++|++|.++|..|+.+++.|++||+|||.+...+.+... ++. .....+.+...++..++++|.|+|++|++ +
T Consensus 690 q~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~---~~~----~~~~~~~~~~~~~~~~~~~f~PEflnRi~-i 761 (852)
T TIGR03345 690 QVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMALCA---DPE----TAPDPEALLEALRPELLKVFKPAFLGRMT-V 761 (852)
T ss_pred HHhhcceeecCCCcEEeccccEEEEeCCCchHHHHHhcc---Ccc----cCcchHHHHHHHHHHHHHhccHHHhccee-E
Confidence 999999999999999999999999999999887654321 111 11234556778888999999999999997 8
Q ss_pred EEcCCCCHHHHccccC
Q 003088 833 VVFRSLEKAQVCQLPL 848 (849)
Q Consensus 833 i~f~pl~~~~~~~I~~ 848 (849)
|+|.||+.+++.+|++
T Consensus 762 I~F~pLs~e~l~~Iv~ 777 (852)
T TIGR03345 762 IPYLPLDDDVLAAIVR 777 (852)
T ss_pred EEeCCCCHHHHHHHHH
Confidence 9999999999999875
No 4
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=100.00 E-value=2.2e-95 Score=874.45 Aligned_cols=658 Identities=44% Similarity=0.723 Sum_probs=585.5
Q ss_pred hhHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhcCCChHHHHHHCCCCHHHHHHHHHHHhh-hCCCCCCcchhccCCCC
Q 003088 85 FTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAVVSIWH-STNNQDTDDAAAQGKPF 163 (849)
Q Consensus 85 ft~~a~~~l~~A~~~A~~~~~~~v~~eHLLlaLl~~~~~~~~l~~~gi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 163 (849)
||++|+++|..|+.+|++++|.+|++||||+|||.++++.++|..+|++++.+++++...++ ..+.. ..
T Consensus 1 ~~~~a~~~L~~A~~~A~~~~h~~V~~EHLLlaLL~~~~~~~iL~~~gid~~~l~~~l~~~l~~~~p~~----------~~ 70 (731)
T TIGR02639 1 ISEELERILDAALEEAKKRRHEFVTLEHILLALLFDSDAIEILEECGGDVEALRKDLEDYLENNLPSI----------TE 70 (731)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCcCcHHHHHHHHHcCchHHHHHHHcCCCHHHHHHHHHHHHhhcCCCC----------CC
Confidence 68999999999999999999999999999999999988889999999999999999999887 33320 11
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHhhhcCCchhhHHHHhhcCCHHHHHHHHHHhhhhcccccCCC
Q 003088 164 SSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGRE 243 (849)
Q Consensus 164 ~~~~~~~~s~~~~~vl~~A~~~a~~~g~~~I~~ehlLlall~~~~~~a~~iL~~~gv~~~~l~~~~~~~~~~~~~~~~~~ 243 (849)
..+++++||+.++++|+.|.++|..+|+++|+++|||+||++++++.+.++|..+|++.+.+...+....... . ....
T Consensus 71 ~~~~~~~~S~~lk~vL~~A~~~A~~~g~~~I~teHLLLALl~~~~~~a~~lL~~~gi~~~~l~~~l~~~~~~~-~-~~~~ 148 (731)
T TIGR02639 71 ENEADPEQTVGVQRVLQRALLHVKSAGKKEIGIGDILVALFDEEDSHASYFLKSQGITRLDILEYISHGIPKD-D-GKNR 148 (731)
T ss_pred CCCCCCCcCHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHhcCcccHHHHHHHHcCCCHHHHHHHHHhhcccc-c-cccc
Confidence 1224689999999999999999999999999999999999999888899999999999998877664321100 0 0000
Q ss_pred CccccccccccccccccccCCCCCCcchhHHhhhhhhHHHHhhcCCCCccccHHHHHHHHHHHhcCCCCCCeEeCCCCCh
Q 003088 244 PSLAKGVRENSISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVG 323 (849)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~l~~iiG~~~~i~~l~~~l~~~~~~niLL~GppGtG 323 (849)
. ... .... ........|++||.||++++++++++++|||++++++++++|+++.++|+||+||||||
T Consensus 149 ~----~~~----~~~~-----~~~~~~~~l~~~~~~l~~~~r~~~l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~G 215 (731)
T TIGR02639 149 D----AEE----AGKE-----EAKKQEDALEKYTVDLTEKAKNGKIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVG 215 (731)
T ss_pred c----ccc----cccc-----ccccchhHHHHHhhhHHHHHhcCCCCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCC
Confidence 0 000 0000 00113468999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCC
Q 003088 324 KTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRG 403 (849)
Q Consensus 324 KT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~ 403 (849)
||++|+++|+++..+++|..+.+++++.++++.+.++.+++|+++++++.+++++++.+++||||||+|.+++++...
T Consensus 216 KT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~-- 293 (731)
T TIGR02639 216 KTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATS-- 293 (731)
T ss_pred HHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCC--
Confidence 999999999999999999999999999999999999999999999999999999987788999999999999876432
Q ss_pred CCCccHHHHHHHhhhhcCCCeEEEEccChHHHHHHhhccHHHHhccccEEecCCCHHHHHHHHHHHHHHHHhhcCCccCH
Q 003088 404 NKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTL 483 (849)
Q Consensus 404 ~~~~~~~~~~~L~~~le~~~i~vI~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~ 483 (849)
+++.+++++|++.+++|.+.|||+||..+|+++++.|++|.|||+.|.|++|+.+++.+||+.+..+|+.+|++.+++
T Consensus 294 --~~~~~~~~~L~~~l~~g~i~~IgaTt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~ 371 (731)
T TIGR02639 294 --GGSMDASNLLKPALSSGKLRCIGSTTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLKEKYEEFHHVKYSD 371 (731)
T ss_pred --CccHHHHHHHHHHHhCCCeEEEEecCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHHHHHHhccCcccCH
Confidence 345788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcccccCcchhhHHHHHHHHhhHHHHhhhhchhhhhhhhcCCCCchHHHHHHHHHHhHHHHHhcccccch
Q 003088 484 EAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLKYDD 563 (849)
Q Consensus 484 ~~l~~~a~ls~~~~~~r~~p~~ai~ll~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (849)
+++..++.++++|+.++++|++|++++|+|++.+++.....
T Consensus 372 ~al~~~~~ls~ryi~~r~~P~kai~lld~a~a~~~~~~~~~--------------------------------------- 412 (731)
T TIGR02639 372 EALEAAVELSARYINDRFLPDKAIDVIDEAGASFRLRPKAK--------------------------------------- 412 (731)
T ss_pred HHHHHHHHhhhcccccccCCHHHHHHHHHhhhhhhcCcccc---------------------------------------
Confidence 99999999999999999999999999999998776531110
Q ss_pred hhhccCCcchhHHhccCCCCCCCCCCCccCHhHHHHHHHhHhCCCcccCCHHHHHHHHHHHHHHhccccccHHHHHHHHH
Q 003088 564 VVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISR 643 (849)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~i~Gq~~~i~~l~~ 643 (849)
....|+.++|.++++.|+|+|+..+.+++...+..++..|.+.|+||+++++.+..
T Consensus 413 ------------------------~~~~v~~~~i~~~i~~~tgiP~~~~~~~~~~~l~~l~~~l~~~v~GQ~~ai~~l~~ 468 (731)
T TIGR02639 413 ------------------------KKANVSVKDIENVVAKMAHIPVKTVSVDDREKLKNLEKNLKAKIFGQDEAIDSLVS 468 (731)
T ss_pred ------------------------cccccCHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhcceeCcHHHHHHHHH
Confidence 12458999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccccccCCCCCccccccCcch
Q 003088 644 AVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLL 723 (849)
Q Consensus 644 ~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~vg~~~~~~l 723 (849)
++...+.|+..|.+|.+++||+||||||||++|++||+.+ +.+++.+||+++.+.+.++.++|+|+||+|+++++.+
T Consensus 469 ~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l---~~~~~~~d~se~~~~~~~~~lig~~~gyvg~~~~~~l 545 (731)
T TIGR02639 469 SIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL---GVHLERFDMSEYMEKHTVSRLIGAPPGYVGFEQGGLL 545 (731)
T ss_pred HHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh---cCCeEEEeCchhhhcccHHHHhcCCCCCcccchhhHH
Confidence 9999999999999999999999999999999999999998 4679999999999999999999999999999999999
Q ss_pred hHHHHhCCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCchhhhcccCCccccccccCCc
Q 003088 724 TEAIRRRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNES 803 (849)
Q Consensus 724 ~~~i~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~ 803 (849)
+++++..|++||||||||++++++++.|+++||+|.++|..|++++++|++||+|||.+...+.+. .+||...
T Consensus 546 ~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~~~~~~---~~~f~~~---- 618 (731)
T TIGR02639 546 TEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGASEMSKP---PIGFGSE---- 618 (731)
T ss_pred HHHHHhCCCeEEEEechhhcCHHHHHHHHHhhccCeeecCCCcccCCCCCEEEECCCcchhhhhhc---cCCcchh----
Confidence 999999999999999999999999999999999999999999999999999999999998776542 3676431
Q ss_pred ccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHHHccccC
Q 003088 804 TSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQLPL 848 (849)
Q Consensus 804 ~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~I~~ 848 (849)
.....++..++++|.|+|++|||.+|+|.||+.+++.+|++
T Consensus 619 ----~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~ 659 (731)
T TIGR02639 619 ----NVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQ 659 (731)
T ss_pred ----hhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHH
Confidence 12345677888999999999999999999999999999875
No 5
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=100.00 E-value=3.4e-94 Score=874.87 Aligned_cols=713 Identities=46% Similarity=0.745 Sum_probs=598.7
Q ss_pred hhHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhcCCC--hHHHHHHCCCCHHHHHHHHHHHhhhCCCCCCcchhccCCC
Q 003088 85 FTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDR--HPNGFLESGITIDKAREAVVSIWHSTNNQDTDDAAAQGKP 162 (849)
Q Consensus 85 ft~~a~~~l~~A~~~A~~~~~~~v~~eHLLlaLl~~~~--~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (849)
||++|+++|..|+.+|++++|++|+|||||+||+.+++ +.++|..+|++++.+++++...+++.+..
T Consensus 1 fT~~a~~vL~~A~~~A~~~~h~~V~~EHLLlaLl~~~~g~a~~iL~~~Gvd~~~l~~~l~~~l~~~~~~----------- 69 (852)
T TIGR03346 1 FTEKFQEALQAAQSLALGRDHQQIEPEHLLKALLDQEGGLARRLLQKAGVNVGALRQALEKELEKLPKV----------- 69 (852)
T ss_pred CCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhCCccHHHHHHHHcCCCHHHHHHHHHHHhcccccC-----------
Confidence 79999999999999999999999999999999999876 57899999999999999999988775431
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHhhhcCCchhhHHHHhhcCCHHHHHHHHHHhhhhcccccCC
Q 003088 163 FSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGR 242 (849)
Q Consensus 163 ~~~~~~~~~s~~~~~vl~~A~~~a~~~g~~~I~~ehlLlall~~~~~~a~~iL~~~gv~~~~l~~~~~~~~~~~~~~~~~ 242 (849)
.+.+++++||+.++++|+.|..+|..+|+.+|+++|||+||++++++ ++++|..+|++.+.+.+.+.+...+. ..
T Consensus 70 ~~~~~~~~~S~~~~~vLe~A~~~A~~~g~~~I~teHLLlALl~e~~~-a~~iL~~~gi~~~~l~~~l~~~~~~~----~~ 144 (852)
T TIGR03346 70 SGPGGQVYLSPELNRLLNLAEKLAQKRGDEFISSEHLLLALLDDKGT-LGKLLKEAGATADALEAAINAVRGGQ----KV 144 (852)
T ss_pred CCCCCCCCcCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHcCCcc-HHHHHHHcCCCHHHHHHHHHhhccCc----cc
Confidence 11125689999999999999999999999999999999999998776 67899999999998877765422100 00
Q ss_pred CCccccccccccccccccccCCCCCCcchhHHhhhhhhHHHHhhcCCCCccccHHHHHHHHHHHhcCCCCCCeEeCCCCC
Q 003088 243 EPSLAKGVRENSISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGV 322 (849)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~l~~iiG~~~~i~~l~~~l~~~~~~niLL~GppGt 322 (849)
. . .. .......|++||+||++++++++++++|||++++++++++|+++.++|++|+|||||
T Consensus 145 ~-----~------~~--------~~~~~~~l~~~~~~l~~~~~~~~~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGv 205 (852)
T TIGR03346 145 T-----S------AN--------AEDQYEALEKYARDLTERAREGKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGV 205 (852)
T ss_pred c-----c------cc--------cccchhHHHHHhhhHHHHhhCCCCCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCC
Confidence 0 0 00 001346899999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhccccccchHHHHHHHHHHHHHh-cCCeEEEEcCcchhhhCCCCC
Q 003088 323 GKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK-SGDVILFIDEVHTLIGSGTVG 401 (849)
Q Consensus 323 GKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~~~~~~g~~e~~l~~l~~~~~~-~~~~ILfIDEi~~l~~~~~~~ 401 (849)
|||++|+++|+.+..+.+|..+.+++++.++++.++++.+++|+++.+++.+++++.. .+++||||||+|.|+++|..
T Consensus 206 GKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~- 284 (852)
T TIGR03346 206 GKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKA- 284 (852)
T ss_pred CHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCC-
Confidence 9999999999999999999999999999999999999999999999999999999875 45899999999999876543
Q ss_pred CCCCCccHHHHHHHhhhhcCCCeEEEEccChHHHHHHhhccHHHHhccccEEecCCCHHHHHHHHHHHHHHHHhhcCCcc
Q 003088 402 RGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKF 481 (849)
Q Consensus 402 ~~~~~~~~~~~~~L~~~le~~~i~vI~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i 481 (849)
.++.++.++|++.+++|.+.|||+||.++|++++.+|++|.|||+.|.+++|+.+++..||+.+..+|+.+|++.+
T Consensus 285 ----~~~~d~~~~Lk~~l~~g~i~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~ 360 (852)
T TIGR03346 285 ----EGAMDAGNMLKPALARGELHCIGATTLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLKERYEVHHGVRI 360 (852)
T ss_pred ----cchhHHHHHhchhhhcCceEEEEeCcHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHHHHhccccCCCC
Confidence 3467899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHhhhcccccCcchhhHHHHHHHHhhHHHHhhhhchhhhhh------------hhcCCCCch--------HH
Q 003088 482 TLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQT------------CILSKPPDD--------YW 541 (849)
Q Consensus 482 ~~~~l~~~a~ls~~~~~~r~~p~~ai~ll~~a~~~~~~~~~~~~~~~~~------------~~l~~~~~~--------~~ 541 (849)
+++++..++.++++|+.+|++||||++++|+||+.+++.....|..... ..+.+..+. +.
T Consensus 361 ~d~~i~~~~~ls~~yi~~r~lPdkAidlld~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (852)
T TIGR03346 361 TDPAIVAAATLSHRYITDRFLPDKAIDLIDEAAARIRMEIDSKPEELDELDRRIIQLEIEREALKKEKDEASKERLEDLE 440 (852)
T ss_pred CHHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 9999999999999999999999999999999999998875544432110 111111110 11
Q ss_pred HHHHHHHHhHHHHHhcccc--------------------------------cchhhhccCCcch----h-HHhccCC-CC
Q 003088 542 QEIRTVQAMHEVVQGSRLK--------------------------------YDDVVASMGDTSE----I-VVESSLP-SA 583 (849)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~----~-~~~~~~~-~~ 583 (849)
.++..+....+.. ...+. .....+....... + ..+.... ..
T Consensus 441 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (852)
T TIGR03346 441 KELAELEEEYADL-EEQWKAEKAAIQGIQQIKEEIEQVRLELEQAEREGDLAKAAELQYGKLPELEKRLQAAEAKLGEET 519 (852)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcchHHHHHHHHHHHHHhhhcc
Confidence 1111111111000 00000 0000000000000 0 0000000 00
Q ss_pred CCCCCCCccCHhHHHHHHHhHhCCCcccCCHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHhhcCCCCCCCCCccce
Q 003088 584 SDDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAML 663 (849)
Q Consensus 584 ~~~~~~~~v~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL 663 (849)
........|+.++|+.+++.|+|+|+..+..++...+..++..|.+.|+||+.+++.+..++...+.|+..|.+|.+++|
T Consensus 520 ~~~l~~~~v~~~~i~~v~~~~tgip~~~~~~~e~~~l~~l~~~l~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~L 599 (852)
T TIGR03346 520 KPRLLREEVTAEEIAEVVSRWTGIPVSKMLEGEREKLLHMEEVLHERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFL 599 (852)
T ss_pred ccccccCCcCHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEE
Confidence 12233467999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccccccCCCCCccccccCcchhHHHHhCCCeEEEEeCcccc
Q 003088 664 FCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRRRPFTLLLLDEIEKA 743 (849)
Q Consensus 664 ~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~i~~~~~~vl~lDEid~l 743 (849)
|+||+|||||++|++||+.+++.+.+++.+||+++.+.+..+.++|.|+||+|+.+++.++++++..|++||||||||++
T Consensus 600 f~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka 679 (852)
T TIGR03346 600 FLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKA 679 (852)
T ss_pred EEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCCh
Q 003088 744 HPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRP 823 (849)
Q Consensus 744 ~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~p 823 (849)
++++++.|+++|++|.++|..|++++++|++||+|||.++..+.+.. + ...+..+...+++.++++|+|
T Consensus 680 ~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~~----~-------~~~~~~~~~~~~~~~~~~F~p 748 (852)
T TIGR03346 680 HPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQELA----G-------GDDYEEMREAVMEVLRAHFRP 748 (852)
T ss_pred CHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcchHhHhhhc----c-------cccHHHHHHHHHHHHHhhcCH
Confidence 99999999999999999999999999999999999999987665321 1 112455667788889999999
Q ss_pred HHhhccccEEEcCCCCHHHHccccCC
Q 003088 824 ELLNRIDEVVVFRSLEKAQVCQLPLI 849 (849)
Q Consensus 824 ell~R~d~~i~f~pl~~~~~~~I~~l 849 (849)
+|++|||.+++|.|++++++.+|+++
T Consensus 749 el~~Rid~IivF~PL~~e~l~~I~~l 774 (852)
T TIGR03346 749 EFLNRIDEIVVFHPLGREQIARIVEI 774 (852)
T ss_pred HHhcCcCeEEecCCcCHHHHHHHHHH
Confidence 99999999999999999999998753
No 6
>PRK10865 protein disaggregation chaperone; Provisional
Probab=100.00 E-value=4.5e-93 Score=860.25 Aligned_cols=718 Identities=43% Similarity=0.697 Sum_probs=597.5
Q ss_pred chHHHhhHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhcCCC--hHHHHHHCCCCHHHHHHHHHHHhhhCCCCCCcchh
Q 003088 80 SVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDR--HPNGFLESGITIDKAREAVVSIWHSTNNQDTDDAA 157 (849)
Q Consensus 80 ~~ferft~~a~~~l~~A~~~A~~~~~~~v~~eHLLlaLl~~~~--~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (849)
|||++||+.++.+|..|+.+|++++|.+|++||||+||+.++. ...+|..+|+++..++.++...+++.+..
T Consensus 1 ~~~~~~~~~~~~~l~~a~~~a~~~~~~~~~~~hll~~l~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~------ 74 (857)
T PRK10865 1 MRLDRLTNKFQLALADAQSLALGHDNQFIEPLHLMSALLNQEGGSVRPLLTSAGINAGQLRTDINQALSRLPQV------ 74 (857)
T ss_pred CChHHhCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhCCccHHHHHHHHcCCCHHHHHHHHHHHHhhCCCC------
Confidence 4689999999999999999999999999999999999999876 57899999999999999999988876531
Q ss_pred ccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHhhhcCCchhhHHHHhhcCCHHHHHHHHHHhhhhcc
Q 003088 158 AQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGEL 237 (849)
Q Consensus 158 ~~~~~~~~~~~~~~s~~~~~vl~~A~~~a~~~g~~~I~~ehlLlall~~~~~~a~~iL~~~gv~~~~l~~~~~~~~~~~~ 237 (849)
.+....+++|+.++++|+.|..+|..+|+.+|+++|||+|++.++++ .+.+|..+|++.+.+...+.+...+.
T Consensus 75 -----~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~i~~~~ll~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~- 147 (857)
T PRK10865 75 -----EGTGGDVQPSQDLVRVLNLCDKLAQKRGDNFISSELFVLAALESRGT-LADILKAAGATTANITQAIEQMRGGE- 147 (857)
T ss_pred -----CCCCCCCCcCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHcCcch-HHHHHHHcCCCHHHHHHHHHHhhccc-
Confidence 11225688999999999999999999999999999999999987554 44689999999999877655432110
Q ss_pred cccCCCCccccccccccccccccccCCCCCCcchhHHhhhhhhHHHHhhcCCCCccccHHHHHHHHHHHhcCCCCCCeEe
Q 003088 238 AKEGREPSLAKGVRENSISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317 (849)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~l~~iiG~~~~i~~l~~~l~~~~~~niLL~ 317 (849)
... +.. + ......|++||+||++++++++++++|||++++++++++|+++.++|+||+
T Consensus 148 ---~~~------------~~~------~-~~~~~~l~~~~~~l~~~~r~~~l~~vigr~~ei~~~i~iL~r~~~~n~lL~ 205 (857)
T PRK10865 148 ---SVN------------DQG------A-EDQRQALKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLI 205 (857)
T ss_pred ---ccc------------ccc------c-ccchhHHHHHhhhHHHHHhcCCCCcCCCCHHHHHHHHHHHhcCCcCceEEE
Confidence 000 000 0 013468999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhccccccchHHHHHHHHHHHHHh-cCCeEEEEcCcchhhh
Q 003088 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK-SGDVILFIDEVHTLIG 396 (849)
Q Consensus 318 GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~~~~~~g~~e~~l~~l~~~~~~-~~~~ILfIDEi~~l~~ 396 (849)
||||||||++|++||.++..+.+|..+.+.+++.++++.++++.+++|+++++++.+++++.. .+++||||||+|.+++
T Consensus 206 G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~ 285 (857)
T PRK10865 206 GEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVG 285 (857)
T ss_pred CCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhcc
Confidence 999999999999999999999999999999999999999999999999999999999998755 5689999999999987
Q ss_pred CCCCCCCCCCccHHHHHHHhhhhcCCCeEEEEccChHHHHHHhhccHHHHhccccEEecCCCHHHHHHHHHHHHHHHHhh
Q 003088 397 SGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAH 476 (849)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~L~~~le~~~i~vI~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL~~~~~~~~~~ 476 (849)
++.. +++.+++++|++.+++|.+.|||+||.++|++++++|++|.|||+.|.+++|+.+++..||+.+.++|+.+
T Consensus 286 ~~~~-----~~~~d~~~~lkp~l~~g~l~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~~~~e~~ 360 (857)
T PRK10865 286 AGKA-----DGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELH 360 (857)
T ss_pred CCCC-----ccchhHHHHhcchhhcCCCeEEEcCCCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHhhhhccC
Confidence 7643 45788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccCHHHHHHHHHhhhcccccCcchhhHHHHHHHHhhHHHHhhhhchhhhhh------------hhcCCCCchH----
Q 003088 477 HNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQT------------CILSKPPDDY---- 540 (849)
Q Consensus 477 ~~~~i~~~~l~~~a~ls~~~~~~r~~p~~ai~ll~~a~~~~~~~~~~~~~~~~~------------~~l~~~~~~~---- 540 (849)
|++.++++++..++.++++|+.++++|++|++++|.+++..++....++..... ..+..+.+..
T Consensus 361 ~~v~~~d~a~~~a~~ls~ry~~~~~~pdkAi~LiD~aaa~~rl~~~~kp~~L~rLer~l~~L~~E~e~l~~e~~~~~~~~ 440 (857)
T PRK10865 361 HHVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAASSIRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASKKR 440 (857)
T ss_pred CCCCcCHHHHHHHHHHhhccccCCCCChHHHHHHHHHhcccccccccChHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 999999999999999999999999999999999999999988876655543210 1111111000
Q ss_pred ----HHHHHHHHHhH-------HHHH----------------------hccccc--chhhhccCCcchh----HHhccCC
Q 003088 541 ----WQEIRTVQAMH-------EVVQ----------------------GSRLKY--DDVVASMGDTSEI----VVESSLP 581 (849)
Q Consensus 541 ----~~~~~~~~~~~-------~~~~----------------------~~~~~~--~~~~~~~~~~~~~----~~~~~~~ 581 (849)
.+++...+... +... +....+ ....+........ .......
T Consensus 441 ~~~l~~~l~~lq~e~~~L~eq~k~~k~el~~~~~~~~ele~l~~kie~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 (857)
T PRK10865 441 LDMLNEELSDKERQYSELEEEWKAEKASLSGTQTIKAELEQAKIAIEQARRVGDLARMSELQYGKIPELEKQLAAATQLE 520 (857)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhhhHHHHHHHHHHHhhh
Confidence 00000000000 0000 000000 0000000000000 0000000
Q ss_pred CCCCCCCCCccCHhHHHHHHHhHhCCCcccCCHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHhhcCCCCCCCCCcc
Q 003088 582 SASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAA 661 (849)
Q Consensus 582 ~~~~~~~~~~v~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~ 661 (849)
..........|+.++|+++++.|+|+|+.++..++..++..+++.|.+.++||+.+++.+..++...+.|+..|.+|.++
T Consensus 521 ~~~~~~~~~~v~~~~i~~vv~~~tgip~~~~~~~~~~~l~~l~~~l~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~ 600 (857)
T PRK10865 521 GKTMRLLRNKVTDAEIAEVLARWTGIPVSRMLESEREKLLRMEQELHHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGS 600 (857)
T ss_pred ccccccccCccCHHHHHHHHHHHHCCCchhhhhhHHHHHHHHHHHhCCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCce
Confidence 01122334579999999999999999999999999999999999999999999999999999999999999999999989
Q ss_pred ceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccccccCCCCCccccccCcchhHHHHhCCCeEEEEeCcc
Q 003088 662 MLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRRRPFTLLLLDEIE 741 (849)
Q Consensus 662 lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~i~~~~~~vl~lDEid 741 (849)
+||+||+|||||++|++||+.+++.+.+++.++|+++.+.+..+.++|.|+||+|+.+++.++++++..|++||||||++
T Consensus 601 ~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEie 680 (857)
T PRK10865 601 FLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVE 680 (857)
T ss_pred EEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehh
Confidence 99999999999999999999999888899999999999888889999999999999998899999999999999999999
Q ss_pred ccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhC
Q 003088 742 KAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYF 821 (849)
Q Consensus 742 ~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~ 821 (849)
++++.+++.|+++|++|.+++..|++++++|++||+|||.++..+.+. +|. .....+...+...+.++|
T Consensus 681 ka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~----~~~-------~~~~~~~~~~~~~~~~~f 749 (857)
T PRK10865 681 KAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQER----FGE-------LDYAHMKELVLGVVSHNF 749 (857)
T ss_pred hCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeCCcchHHHHHh----ccc-------cchHHHHHHHHHHHcccc
Confidence 999999999999999999999999999999999999999998766532 221 123445666777788899
Q ss_pred ChHHhhccccEEEcCCCCHHHHccccC
Q 003088 822 RPELLNRIDEVVVFRSLEKAQVCQLPL 848 (849)
Q Consensus 822 ~pell~R~d~~i~f~pl~~~~~~~I~~ 848 (849)
+|+|++|+|.++.|.|++++++.+|++
T Consensus 750 ~PELlnRld~iivF~PL~~edl~~Iv~ 776 (857)
T PRK10865 750 RPEFINRIDEVVVFHPLGEQHIASIAQ 776 (857)
T ss_pred cHHHHHhCCeeEecCCCCHHHHHHHHH
Confidence 999999999999999999999998875
No 7
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=100.00 E-value=5.5e-92 Score=830.87 Aligned_cols=662 Identities=40% Similarity=0.665 Sum_probs=579.1
Q ss_pred hhHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhcCCChHHHHHHCCCCHHHHHHHHHHHhhhCCCCCCcchhccCCCCC
Q 003088 85 FTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAVVSIWHSTNNQDTDDAAAQGKPFS 164 (849)
Q Consensus 85 ft~~a~~~l~~A~~~A~~~~~~~v~~eHLLlaLl~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (849)
+|+.++.+|..|+.+|+.++|.+|++||||+||+.++....+|..+|++...++..+...++...+.. + ...
T Consensus 2 ~~~~~~~~l~~a~~~a~~~~~~~~~~~h~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~---~~~ 73 (758)
T PRK11034 2 LNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPVL-----P---ASE 73 (758)
T ss_pred cCHHHHHHHHHHHHHHHHcCCCcchHHHHHHHHHcChhHHHHHHHcCCCHHHHHHHHHHHHhhcCCcC-----C---CCC
Confidence 68899999999999999999999999999999998877888999999999999999998876321100 0 001
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHhhhcCCchhhHHHHhhcCCHHHHHHHHHHhhhhcccccCCCC
Q 003088 165 SAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREP 244 (849)
Q Consensus 165 ~~~~~~~s~~~~~vl~~A~~~a~~~g~~~I~~ehlLlall~~~~~~a~~iL~~~gv~~~~l~~~~~~~~~~~~~~~~~~~ 244 (849)
...+++++..++++|+.|..+|..+|+.+|+++|||+||++++++.+..+|..+|++...+...+... .. .....+.
T Consensus 74 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~~i~~~~ll~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~-~~~~~~~ 150 (758)
T PRK11034 74 EERDTQPTLSFQRVLQRAVFHVQSSGRSEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHG--TR-KDEPSQS 150 (758)
T ss_pred CcCCcCCCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHhcCCcchHHHHHHHcCCCHHHHHHHHHhC--Cc-ccccccc
Confidence 11357899999999999999999999999999999999999988999999999999998876543211 00 0000000
Q ss_pred ccccccccccccccccccCCCCCCcchhHHhhhhhhHHHHhhcCCCCccccHHHHHHHHHHHhcCCCCCCeEeCCCCChH
Q 003088 245 SLAKGVRENSISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGK 324 (849)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~l~~iiG~~~~i~~l~~~l~~~~~~niLL~GppGtGK 324 (849)
+.... ...+. ........|++||+||++.++.|++++++||++++++++++|+++.++|+||+|||||||
T Consensus 151 ---~~~~~-~~~~~------~~~~~~~~l~~~~~~l~~~a~~g~~~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGK 220 (758)
T PRK11034 151 ---SDPGS-QPNSE------EQAGGEERMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGK 220 (758)
T ss_pred ---ccccc-ccccc------ccccchhHHHHHHHhHHHHHHcCCCCcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCH
Confidence 00000 00000 000123589999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCC
Q 003088 325 TAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGN 404 (849)
Q Consensus 325 T~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~ 404 (849)
|++|+++|+.+...++|..+.++.++.++++.+++|.+++|+++.+++.++++++..+++||||||+|.+++.+...
T Consensus 221 T~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~--- 297 (758)
T PRK11034 221 TAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAAS--- 297 (758)
T ss_pred HHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCC---
Confidence 99999999999999999999999999999999999999999999999999999988788999999999999876431
Q ss_pred CCccHHHHHHHhhhhcCCCeEEEEccChHHHHHHhhccHHHHhccccEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHH
Q 003088 405 KGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLE 484 (849)
Q Consensus 405 ~~~~~~~~~~L~~~le~~~i~vI~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~ 484 (849)
++..++.++|++++++|++.|||+||.++|++++..|++|.|||+.|.|++|+.+++.+||+.+..+|+.+|++.++++
T Consensus 298 -~g~~d~~nlLkp~L~~g~i~vIgATt~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~ 376 (758)
T PRK11034 298 -GGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAK 376 (758)
T ss_pred -CcHHHHHHHHHHHHhCCCeEEEecCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHH
Confidence 3467899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcccccCcchhhHHHHHHHHhhHHHHhhhhchhhhhhhhcCCCCchHHHHHHHHHHhHHHHHhcccccchh
Q 003088 485 AINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLKYDDV 564 (849)
Q Consensus 485 ~l~~~a~ls~~~~~~r~~p~~ai~ll~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (849)
++..++.++.+|++++++|++|++++|+||++.++.....
T Consensus 377 al~~a~~ls~ryi~~r~lPdKaidlldea~a~~~~~~~~~---------------------------------------- 416 (758)
T PRK11034 377 AVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSK---------------------------------------- 416 (758)
T ss_pred HHHHHHHHhhccccCccChHHHHHHHHHHHHhhccCcccc----------------------------------------
Confidence 9999999999999999999999999999999776411000
Q ss_pred hhccCCcchhHHhccCCCCCCCCCCCccCHhHHHHHHHhHhCCCcccCCHHHHHHHHHHHHHHhccccccHHHHHHHHHH
Q 003088 565 VASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRA 644 (849)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~i~Gq~~~i~~l~~~ 644 (849)
....|+.++|.++++.|+|+|+..+..++...+..++..|.+.|+||+++++.|..+
T Consensus 417 -----------------------~~~~v~~~~i~~v~~~~tgip~~~~~~~~~~~l~~l~~~L~~~ViGQ~~ai~~l~~~ 473 (758)
T PRK11034 417 -----------------------RKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEA 473 (758)
T ss_pred -----------------------cccccChhhHHHHHHHHhCCChhhhhhhHHHHHHHHHHHhcceEeCcHHHHHHHHHH
Confidence 013478899999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccccccCCCCCccccccCcchh
Q 003088 645 VKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLT 724 (849)
Q Consensus 645 l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~vg~~~~~~l~ 724 (849)
+...+.|+..+++|.+++||+||||||||++|+.+|+.+ +.+|+.+||+++.+.+.++.++|.|+||+|+..++.++
T Consensus 474 i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l---~~~~i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~ 550 (758)
T PRK11034 474 IKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL---GIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLT 550 (758)
T ss_pred HHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh---CCCcEEeechhhcccccHHHHcCCCCCcccccccchHH
Confidence 999999999999999999999999999999999999998 46899999999999999999999999999999889999
Q ss_pred HHHHhCCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCchhhhcccCCccccccccCCcc
Q 003088 725 EAIRRRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNEST 804 (849)
Q Consensus 725 ~~i~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~ 804 (849)
+++++.|++||||||||++++++++.|+++||+|.+++..|++++++|++||+|||.+.+.+.+. .+||...+.
T Consensus 551 ~~v~~~p~sVlllDEieka~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~~~~~~~---~~g~~~~~~--- 624 (758)
T PRK11034 551 DAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERK---SIGLIHQDN--- 624 (758)
T ss_pred HHHHhCCCcEEEeccHhhhhHHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcCHHHHhhc---ccCcccchh---
Confidence 99999999999999999999999999999999999999999999999999999999998776543 467753221
Q ss_pred cHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHHHccccC
Q 003088 805 SYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQLPL 848 (849)
Q Consensus 805 ~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~I~~ 848 (849)
...+...++++|+|+|++|||.+|.|+||+.+++.+|++
T Consensus 625 -----~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~ 663 (758)
T PRK11034 625 -----STDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVD 663 (758)
T ss_pred -----hHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHH
Confidence 123446778899999999999999999999999999875
No 8
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-89 Score=795.64 Aligned_cols=726 Identities=41% Similarity=0.602 Sum_probs=612.3
Q ss_pred CCccchHHHhhHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhcCCC--hHHHHHHCC-CCHHHHHHHHHHHhhhCCCCC
Q 003088 76 IPISSVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDR--HPNGFLESG-ITIDKAREAVVSIWHSTNNQD 152 (849)
Q Consensus 76 ~~~~~~ferft~~a~~~l~~A~~~A~~~~~~~v~~eHLLlaLl~~~~--~~~~l~~~g-i~~~~~~~~~~~~~~~~~~~~ 152 (849)
.+++.+++.||++|..||..|+.+|+++||.+++|+|++.+||.+++ ..+++.+.+ +++.++..++...+.+.|.
T Consensus 3 t~~~t~~q~lT~~Aa~~L~~a~~~Arrrgh~qvtplH~~~~LLs~~t~~lr~ac~~~~~l~~ralelc~~v~l~rlpt-- 80 (898)
T KOG1051|consen 3 TGVYTVQQTLTEEAATVLKQAVTEARRRGHAQVTPLHVASTLLSSPTGILRRACIKSHPLQCRALELCFNVSLNRLPT-- 80 (898)
T ss_pred CcccchHhhhCHHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHcCCchHHHHHHHhcCcccHHHHHHHHHHHHHhccC--
Confidence 45678899999999999999999999999999999999999999988 578899988 9999999999999999886
Q ss_pred CcchhccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHhhhcCCchhhHHHHhhcCCHHHHHHHHHHh
Q 003088 153 TDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSR 232 (849)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~s~~~~~vl~~A~~~a~~~g~~~I~~ehlLlall~~~~~~a~~iL~~~gv~~~~l~~~~~~~ 232 (849)
..+++...+++..+++++..+.+....+++.+|.+||+.|.++-.+++.+.++++++|++..+++..|++.
T Consensus 81 ---------~~~p~~sn~l~aalkr~qa~qrr~~~~~~~~~vkvE~~~li~silDdp~vsrv~reag~~s~~vK~~ve~~ 151 (898)
T KOG1051|consen 81 ---------SYGPPVSNALMAALKRAQAHQRRGCEEQQQQAVKVELEQLILSILDDPSVSRVMREAGFSSSAVKSAVEQP 151 (898)
T ss_pred ---------CCCCccchHhHHHHHHHHHHHHhcchhhccchhhHhHHhhheeeecCchHHHHHHHhcCChHHHHHHHHhh
Confidence 33456677889999999999999999999999999999777777788999999999999999999998877
Q ss_pred hhhcccccCCCCccccccccccccccccccCCCCCCcchhHHhhhhhhHHHHhhcCCCCcccc-HHHHHHHHHHHhcCCC
Q 003088 233 LQGELAKEGREPSLAKGVRENSISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGR-ETEIQRIIQILCRRTK 311 (849)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~l~~iiG~-~~~i~~l~~~l~~~~~ 311 (849)
.... +.++ . +| ......|.+|+.+++++++.+++++++|+ ++++++++++|+++++
T Consensus 152 ~g~~----~~~~-----------~-------~~-~~~~~~L~~~~~dl~p~a~~gkldPvigr~deeirRvi~iL~Rrtk 208 (898)
T KOG1051|consen 152 VGQF----RSPS-----------R-------GP-LWPLLFLENYGTDLTPRARQGKLDPVIGRHDEEIRRVIEILSRKTK 208 (898)
T ss_pred cccc----CCCC-----------c-------CC-ccchhHHHhcccccChhhhccCCCCccCCchHHHHHHHHHHhccCC
Confidence 6211 1111 0 11 12457899999999999999999999999 9999999999999999
Q ss_pred CCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhccccccchHHHHHHHHHHHHH-hcCCeEEEEcC
Q 003088 312 NNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ-KSGDVILFIDE 390 (849)
Q Consensus 312 ~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~~~~~~g~~e~~l~~l~~~~~-~~~~~ILfIDE 390 (849)
+|++|+|+||+|||.+++.+++++..+++|..+.++.++.++++.+.+|.+++|++|.+++.+.+++. .++++||||||
T Consensus 209 ~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfige 288 (898)
T KOG1051|consen 209 NNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGE 288 (898)
T ss_pred CCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 45789999999
Q ss_pred cchhhhCCCCCCCCCCccHHHHHHHhhhhcCCCeEEEEccChHHHHHHhhccHHHHhccccEEecCCCHHHHHHHHHHHH
Q 003088 391 VHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLR 470 (849)
Q Consensus 391 i~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~~i~vI~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL~~~~ 470 (849)
+|++++.+.. ++.+++.++|++.+.++.++||||||.++|++|++.+|+|.+||+.+.++.|+.++...||+++.
T Consensus 289 lh~lvg~g~~-----~~~~d~~nlLkp~L~rg~l~~IGatT~e~Y~k~iekdPalErrw~l~~v~~pS~~~~~~iL~~l~ 363 (898)
T KOG1051|consen 289 LHWLVGSGSN-----YGAIDAANLLKPLLARGGLWCIGATTLETYRKCIEKDPALERRWQLVLVPIPSVENLSLILPGLS 363 (898)
T ss_pred eeeeecCCCc-----chHHHHHHhhHHHHhcCCeEEEecccHHHHHHHHhhCcchhhCcceeEeccCcccchhhhhhhhh
Confidence 9999987765 45889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCccCHHHHHHHHHhhhcccccCcchhhHHHHHHHHhhHHHHhhhhchhhhhhhhcCCCCchHHHHHHHHHHh
Q 003088 471 EKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAM 550 (849)
Q Consensus 471 ~~~~~~~~~~i~~~~l~~~a~ls~~~~~~r~~p~~ai~ll~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 550 (849)
.+|+.+|++.++++++..++.++.+|++.+++|+++++++++|++..+......|...+. +.+.......++..+...
T Consensus 364 ~~~e~~hg~~~s~~a~~~a~~~s~~~~t~r~lpd~aidl~dEa~a~~~~~~~~lP~wL~~--~~~~~~~~~~e~~~L~kk 441 (898)
T KOG1051|consen 364 ERYEVHHGVRISDESLFSAAQLSARYITLSFLPDCAIDLEDEAAALVKSQAESLPPWLQN--LERVDIKLQDEISELQKK 441 (898)
T ss_pred hhhccccCCcccccccccccchhhhhcccCcCchhcccHHHHHHHHHhhhhhhCCHHHHh--hhhhhhhhHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999988777764331 111111111122222211
Q ss_pred HHHHHhcc--------cccchhhh-----------ccC-------CcchhHHhcc-CCCCCC----------------CC
Q 003088 551 HEVVQGSR--------LKYDDVVA-----------SMG-------DTSEIVVESS-LPSASD----------------DD 587 (849)
Q Consensus 551 ~~~~~~~~--------~~~~~~~~-----------~~~-------~~~~~~~~~~-~~~~~~----------------~~ 587 (849)
...+.-.+ .......+ ... ....+ ..+. ...... ..
T Consensus 442 ~d~~~h~r~~~~~~~~~~~~~~~l~~~~~~~~s~~~~l~~~~~~~~~~~~-~~k~~r~~d~~~~~~l~~~~~p~~~~~~~ 520 (898)
T KOG1051|consen 442 WNQALHKRPSLESLAPSKPTQQPLSASVDSERSVIEELKLKKNSLDRNSL-LAKAHRPNDYTRETDLRYGRIPDELSEKS 520 (898)
T ss_pred hhhhhccccccccccccccccccchhhhccchhHHhhhccccCCcccchh-hhcccCCCCcchhhhccccccchhhhhhc
Confidence 11000000 00000000 000 00000 0000 000000 00
Q ss_pred CCCccCHhHHHHHHHhHhCCCcccCCHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecC
Q 003088 588 EPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGP 667 (849)
Q Consensus 588 ~~~~v~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp 667 (849)
.....+..+|..+++.|+|+|.......+..++..+++.|.+.|+||++++..|..++..++.|..+| +|.+|+||.||
T Consensus 521 ~~~~~~~~~i~~~~s~~tgip~~~~~~~e~~~l~~L~~~L~~~V~gQ~eAv~aIa~AI~~sr~gl~~~-~~~awflflGp 599 (898)
T KOG1051|consen 521 NDNQGGESDISEVVSRWTGIPVDRLAEAEAERLKKLEERLHERVIGQDEAVAAIAAAIRRSRAGLKDP-NPDAWFLFLGP 599 (898)
T ss_pred ccccCCccchhhhhhhhcCCchhhhhhhHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhhhcccCCC-CCCeEEEEECC
Confidence 01111677999999999999999999999999999999999999999999999999999999999998 89999999999
Q ss_pred CCCchHHHHHHHHHHhcCCCCceeEeeccccccccccccccCCCCCccccccCcchhHHHHhCCCeEEEEeCccccCHHH
Q 003088 668 TGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRRRPFTLLLLDEIEKAHPDI 747 (849)
Q Consensus 668 ~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~i~~~~~~vl~lDEid~l~~~~ 747 (849)
+|+|||.+|++||..+|+++..||++||+++++ +++++|.|+||+|+.+++.|++++++.|++||+|||||++|+.+
T Consensus 600 dgvGKt~lAkaLA~~~Fgse~~~IriDmse~~e---vskligsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkAh~~v 676 (898)
T KOG1051|consen 600 DGVGKTELAKALAEYVFGSEENFIRLDMSEFQE---VSKLIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKAHPDV 676 (898)
T ss_pred CchhHHHHHHHHHHHHcCCccceEEechhhhhh---hhhccCCCcccccchhHHHHHHHHhcCCceEEEEechhhcCHHH
Confidence 999999999999999999999999999999998 89999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCchhhhcccCCccccccccCC-cccHHhHHHHHHHHHH----hhCC
Q 003088 748 FNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNE-STSYAGMKTLVVEELK----AYFR 822 (849)
Q Consensus 748 ~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~-~~~~~~~~~~~~~~l~----~~~~ 822 (849)
++.|+|+||+|+++|+.|+.++++|++||||+|.+...+..... ..++...+.. ...+.....++.+..+ .+|+
T Consensus 677 ~n~llq~lD~GrltDs~Gr~Vd~kN~I~IMTsn~~~~~i~~~~~-~~~~l~~~~~~~~~~~~~k~~v~~~~~~~~~~~~r 755 (898)
T KOG1051|consen 677 LNILLQLLDRGRLTDSHGREVDFKNAIFIMTSNVGSSAIANDAS-LEEKLLDMDEKRGSYRLKKVQVSDAVRIYNKQFFR 755 (898)
T ss_pred HHHHHHHHhcCccccCCCcEeeccceEEEEecccchHhhhcccc-cccccccchhhhhhhhhhhhhhhhhhhcccccccC
Confidence 99999999999999999999999999999999999887765432 2333332222 2223334567777777 8899
Q ss_pred hHHhhccccEEEcCCCCHHHHccccC
Q 003088 823 PELLNRIDEVVVFRSLEKAQVCQLPL 848 (849)
Q Consensus 823 pell~R~d~~i~f~pl~~~~~~~I~~ 848 (849)
|||++|+|.++.|.|++++++.+|+.
T Consensus 756 ~Ef~nrid~i~lf~~l~~~~~~~i~~ 781 (898)
T KOG1051|consen 756 KEFLNRIDELDLNLPLDRDELIEIVN 781 (898)
T ss_pred hHHhcccceeeeecccchhhHhhhhh
Confidence 99999999999999999999888864
No 9
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.6e-44 Score=388.07 Aligned_cols=451 Identities=20% Similarity=0.327 Sum_probs=315.6
Q ss_pred CCCCccccHHHHHHHHHHHhc------------CCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehh
Q 003088 288 LIDPVIGRETEIQRIIQILCR------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMG 355 (849)
Q Consensus 288 ~l~~iiG~~~~i~~l~~~l~~------------~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~ 355 (849)
+|.++-|.+..+..|.+++.. ...+.+||+||||||||.+|++||.++ +.+++.+...
T Consensus 188 ~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel----------~vPf~~isAp 257 (802)
T KOG0733|consen 188 SFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL----------GVPFLSISAP 257 (802)
T ss_pred chhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc----------CCceEeecch
Confidence 588899999999887775521 345789999999999999999999999 7888999888
Q ss_pred hhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhc--------CCCeEEE
Q 003088 356 LLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG--------RGELQCI 427 (849)
Q Consensus 356 ~~~~~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le--------~~~i~vI 427 (849)
.++.|. .|+.|++++++|++++...|||+||||||.+.+.+... .++....+...|+..|+ ...++||
T Consensus 258 eivSGv--SGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~a--qreMErRiVaQLlt~mD~l~~~~~~g~~VlVI 333 (802)
T KOG0733|consen 258 EIVSGV--SGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEA--QREMERRIVAQLLTSMDELSNEKTKGDPVLVI 333 (802)
T ss_pred hhhccc--CcccHHHHHHHHHHHhccCCeEEEeecccccccchhhH--HHHHHHHHHHHHHHhhhcccccccCCCCeEEE
Confidence 888665 79999999999999999999999999999998876542 22344445566666554 2458999
Q ss_pred EccChHHHHHHhhccHHHHh--ccc-cEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhcccccCcchh
Q 003088 428 ASTTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPD 504 (849)
Q Consensus 428 ~at~~~~~~~~~~~d~al~~--Rf~-~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~~~r~~p~ 504 (849)
||||.++ .+||+|+| ||+ .|.+..|+..+|.+||+.+++.+. +...+ ....+|+++.+|.. .
T Consensus 334 gATnRPD-----slDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lr--l~g~~---d~~qlA~lTPGfVG-----A 398 (802)
T KOG0733|consen 334 GATNRPD-----SLDPALRRAGRFDREICLGVPSETAREEILRIICRGLR--LSGDF---DFKQLAKLTPGFVG-----A 398 (802)
T ss_pred ecCCCCc-----ccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCC--CCCCc---CHHHHHhcCCCccc-----h
Confidence 9999998 99999999 998 699999999999999999988442 22222 25678889988875 6
Q ss_pred hHHHHHHHHhhHHHHhhhhchhhhhh-hhcCCC--CchHHHHHHHHHHhHHHHHhcccccchhhhccCCcchhH---Hhc
Q 003088 505 KAIDLVDEAGSRAHIELFKRKKEQQT-CILSKP--PDDYWQEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIV---VES 578 (849)
Q Consensus 505 ~ai~ll~~a~~~~~~~~~~~~~~~~~-~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 578 (849)
+...|+.+|+..+-.+.......-.+ ...+.. ..+...+...+. . +.+...+....+..+ ...
T Consensus 399 DL~AL~~~Aa~vAikR~ld~~~~p~~~~~~~ed~~~~~~~~d~S~i~-~----------~~~~~~~~~ld~v~~~~i~~~ 467 (802)
T KOG0733|consen 399 DLMALCREAAFVAIKRILDQSSSPLTKVPISEDSSNKDAEEDQSSIK-I----------TSNAERPLELDRVVQDAILNN 467 (802)
T ss_pred hHHHHHHHHHHHHHHHHhhcccCccccCCccccccCCCccchhhhhh-c----------CCcccccccHHHHHHHHHHhC
Confidence 77888888876654443322110000 000000 000100000000 0 000000000000000 001
Q ss_pred cCCCCCCCCCCCccCHhHHHHHHHhHh------CC-CcccCCHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHhhcC
Q 003088 579 SLPSASDDDEPAVVGPDDIAAVASLWS------GI-PVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVG 651 (849)
Q Consensus 579 ~~~~~~~~~~~~~v~~~~i~~~~~~~~------g~-~~~~~~~~~~~~~~~l~~~l~~~i~Gq~~~i~~l~~~l~~~~~g 651 (849)
....+...+....|..+|+.+++..+. |. .+...+|++...+..++.+|...|+. -++..=.+.+.|
T Consensus 468 ~d~~S~E~~~~L~i~~eDF~~Al~~iQPSakREGF~tVPdVtW~dIGaL~~vR~eL~~aI~~------PiK~pd~~k~lG 541 (802)
T KOG0733|consen 468 PDPLSKELLEGLSIKFEDFEEALSKIQPSAKREGFATVPDVTWDDIGALEEVRLELNMAILA------PIKRPDLFKALG 541 (802)
T ss_pred CCCcChHHhccceecHHHHHHHHHhcCcchhcccceecCCCChhhcccHHHHHHHHHHHHhh------hccCHHHHHHhC
Confidence 111223344556799999999887654 22 45578899888888888777543332 222222345667
Q ss_pred CCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccccccCCCCCccccccCc--chhHHHHh
Q 003088 652 LKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGG--LLTEAIRR 729 (849)
Q Consensus 652 ~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~vg~~~~~--~l~~~i~~ 729 (849)
+..|. .+|+|||||||||.+|+++|+. .+.+|+.+.++++.++ |||++|.. .++.-.+.
T Consensus 542 i~~Ps----GvLL~GPPGCGKTLlAKAVANE---ag~NFisVKGPELlNk------------YVGESErAVR~vFqRAR~ 602 (802)
T KOG0733|consen 542 IDAPS----GVLLCGPPGCGKTLLAKAVANE---AGANFISVKGPELLNK------------YVGESERAVRQVFQRARA 602 (802)
T ss_pred CCCCC----ceEEeCCCCccHHHHHHHHhhh---ccCceEeecCHHHHHH------------HhhhHHHHHHHHHHHhhc
Confidence 77654 3999999999999999999998 4788999999999874 89998843 23333345
Q ss_pred CCCeEEEEeCccccCH-----------HHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCchhhhcccCCcccccc
Q 003088 730 RPFTLLLLDEIEKAHP-----------DIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLL 798 (849)
Q Consensus 730 ~~~~vl~lDEid~l~~-----------~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~ 798 (849)
+..|||||||+|.|-| .++|+||..||... ....+.||++||.+--
T Consensus 603 saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~---------~R~gV~viaATNRPDi-------------- 659 (802)
T KOG0733|consen 603 SAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLE---------ERRGVYVIAATNRPDI-------------- 659 (802)
T ss_pred CCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccc---------cccceEEEeecCCCcc--------------
Confidence 5579999999999955 49999999998743 2347889999997421
Q ss_pred ccCCcccHHhHHHHHHHHHHhhCChHHh--hccccEEEcCCCCHHHHccccC
Q 003088 799 EDNESTSYAGMKTLVVEELKAYFRPELL--NRIDEVVVFRSLEKAQVCQLPL 848 (849)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~l~~~~~pell--~R~d~~i~f~pl~~~~~~~I~~ 848 (849)
++|+++ .|||.+....++..++..+|++
T Consensus 660 ----------------------IDpAiLRPGRlDk~LyV~lPn~~eR~~ILK 689 (802)
T KOG0733|consen 660 ----------------------IDPAILRPGRLDKLLYVGLPNAEERVAILK 689 (802)
T ss_pred ----------------------cchhhcCCCccCceeeecCCCHHHHHHHHH
Confidence 678888 8999888888888888888874
No 10
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.7e-38 Score=348.27 Aligned_cols=394 Identities=23% Similarity=0.322 Sum_probs=290.2
Q ss_pred CCccccHHHHHHHHHHH-------------hcCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhh
Q 003088 290 DPVIGRETEIQRIIQIL-------------CRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGL 356 (849)
Q Consensus 290 ~~iiG~~~~i~~l~~~l-------------~~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~ 356 (849)
+++.|....+..+.+.+ ..+.+.++|+|||||+|||.+++++|++. ++.++.++...
T Consensus 184 ~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~----------~a~~~~i~~pe 253 (693)
T KOG0730|consen 184 DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEY----------GAFLFLINGPE 253 (693)
T ss_pred cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHh----------CceeEecccHH
Confidence 45556665555554433 23456789999999999999999999998 78888998888
Q ss_pred hhccccccchHHHHHHHHHHHHHhcC-CeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhc----CCCeEEEEccC
Q 003088 357 LMAGAKERGELEARVTTLISEIQKSG-DVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG----RGELQCIASTT 431 (849)
Q Consensus 357 ~~~~~~~~g~~e~~l~~l~~~~~~~~-~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le----~~~i~vI~at~ 431 (849)
++ .++-|+.+..++..|+++.+.. |.|+||||++.+++.+....+ ....+...|+.+++ .++++||++||
T Consensus 254 li--~k~~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~---~e~Rv~sqlltL~dg~~~~~~vivl~atn 328 (693)
T KOG0730|consen 254 LI--SKFPGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD---VESRVVSQLLTLLDGLKPDAKVIVLAATN 328 (693)
T ss_pred HH--HhcccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch---HHHHHHHHHHHHHhhCcCcCcEEEEEecC
Confidence 87 4568999999999999999988 999999999999986654211 13445555555554 57899999999
Q ss_pred hHHHHHHhhccHHHHh-ccc-cEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhcccccCcchhhHHHH
Q 003088 432 QDEHRTQFEKDKALAR-RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDL 509 (849)
Q Consensus 432 ~~~~~~~~~~d~al~~-Rf~-~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~~~r~~p~~ai~l 509 (849)
.++ .+|++++| ||+ .+++..|+..+|.+|++.+.+++ +.. ++..+..++..+++|.. .++-.+
T Consensus 329 rp~-----sld~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~----~~~-~~~~l~~iA~~thGyvG-----aDL~~l 393 (693)
T KOG0730|consen 329 RPD-----SLDPALRRGRFDREVEIGIPGSDGRLDILRVLTKKM----NLL-SDVDLEDIAVSTHGYVG-----ADLAAL 393 (693)
T ss_pred Ccc-----ccChhhhcCCCcceeeecCCCchhHHHHHHHHHHhc----CCc-chhhHHHHHHHccchhH-----HHHHHH
Confidence 998 99999998 997 69999999999999999888744 333 56778899999999875 566667
Q ss_pred HHHHhhHHHHhhhhchhhhhhhhcCCCCchHHHHHHHHHHhHHHHHhcccccchhhhccCCcchhHHhccCCCCCCCCCC
Q 003088 510 VDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEP 589 (849)
Q Consensus 510 l~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (849)
+.+|...+..+... ..+.. .
T Consensus 394 ~~ea~~~~~r~~~~----------------------~~~~A--------------------------------------~ 413 (693)
T KOG0730|consen 394 CREASLQATRRTLE----------------------IFQEA--------------------------------------L 413 (693)
T ss_pred HHHHHHHHhhhhHH----------------------HHHHH--------------------------------------H
Confidence 66665443322000 00000 0
Q ss_pred CccCHhHHHHHHHhHhCCCcccCCHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCC
Q 003088 590 AVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669 (849)
Q Consensus 590 ~~v~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~G 669 (849)
..+....+++.+ ++..+.+|++...+++++..|+..|.+- +...-...+.|+.+|.+ ||||||||
T Consensus 414 ~~i~psa~Re~~-----ve~p~v~W~dIGGlE~lK~elq~~V~~p------~~~pe~F~r~Gi~ppkG----VLlyGPPG 478 (693)
T KOG0730|consen 414 MGIRPSALREIL-----VEMPNVSWDDIGGLEELKRELQQAVEWP------LKHPEKFARFGISPPKG----VLLYGPPG 478 (693)
T ss_pred hcCCchhhhhee-----ccCCCCChhhccCHHHHHHHHHHHHhhh------hhchHHHHHhcCCCCce----EEEECCCC
Confidence 112222233322 4555777877666666666664433332 22222445677766543 99999999
Q ss_pred CchHHHHHHHHHHhcCCCCceeEeeccccccccccccccCCCCCccccccCc--chhHHHHhCCCeEEEEeCccccC---
Q 003088 670 VGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGG--LLTEAIRRRPFTLLLLDEIEKAH--- 744 (849)
Q Consensus 670 tGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~vg~~~~~--~l~~~i~~~~~~vl~lDEid~l~--- 744 (849)
||||++|+++|+. ++.+|+.+.++++..+ |+|++|.. .++...++...+|+||||||.+.
T Consensus 479 C~KT~lAkalAne---~~~nFlsvkgpEL~sk------------~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R 543 (693)
T KOG0730|consen 479 CGKTLLAKALANE---AGMNFLSVKGPELFSK------------YVGESERAIREVFRKARQVAPCIIFFDEIDALAGSR 543 (693)
T ss_pred cchHHHHHHHhhh---hcCCeeeccCHHHHHH------------hcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhcc
Confidence 9999999999998 4788999999998763 78887732 24444556667999999999873
Q ss_pred --------HHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHH
Q 003088 745 --------PDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEE 816 (849)
Q Consensus 745 --------~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~ 816 (849)
..++++||+.||... ..++++||++||.+..
T Consensus 544 ~g~~~~v~~RVlsqLLtEmDG~e---------~~k~V~ViAATNRpd~-------------------------------- 582 (693)
T KOG0730|consen 544 GGSSSGVTDRVLSQLLTEMDGLE---------ALKNVLVIAATNRPDM-------------------------------- 582 (693)
T ss_pred CCCccchHHHHHHHHHHHccccc---------ccCcEEEEeccCChhh--------------------------------
Confidence 358999999998743 2358999999998532
Q ss_pred HHhhCChHHhh--ccccEEEcCCCCHHHHccccC
Q 003088 817 LKAYFRPELLN--RIDEVVVFRSLEKAQVCQLPL 848 (849)
Q Consensus 817 l~~~~~pell~--R~d~~i~f~pl~~~~~~~I~~ 848 (849)
++++|++ |||.+|.+++++.+...+|++
T Consensus 583 ----ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk 612 (693)
T KOG0730|consen 583 ----IDPALLRPGRLDRIIYVPLPDLEARLEILK 612 (693)
T ss_pred ----cCHHHcCCcccceeEeecCccHHHHHHHHH
Confidence 7899996 999999999999998888875
No 11
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=3.5e-33 Score=337.50 Aligned_cols=413 Identities=21% Similarity=0.312 Sum_probs=281.1
Q ss_pred cCCCCccccHHHHHHHHHHHhc-------------CCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEee
Q 003088 287 ELIDPVIGRETEIQRIIQILCR-------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD 353 (849)
Q Consensus 287 ~~l~~iiG~~~~i~~l~~~l~~-------------~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~ 353 (849)
-.+++++|.+++++.+.+++.. ....++||+||||||||++|+++|+.+ +..++.++
T Consensus 175 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~----------~~~~i~i~ 244 (733)
T TIGR01243 175 VTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA----------GAYFISIN 244 (733)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh----------CCeEEEEe
Confidence 4678999999999998876532 234689999999999999999999988 56677777
Q ss_pred hhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhc----CCCeEEEEc
Q 003088 354 MGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG----RGELQCIAS 429 (849)
Q Consensus 354 ~~~~~~~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le----~~~i~vI~a 429 (849)
...+. .++.|+.+..++.+|+.+....++||||||+|.+.+.+....+ +....+.+.|...++ ++.+++|++
T Consensus 245 ~~~i~--~~~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~--~~~~~~~~~Ll~~ld~l~~~~~vivI~a 320 (733)
T TIGR01243 245 GPEIM--SKYYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTG--EVEKRVVAQLLTLMDGLKGRGRVIVIGA 320 (733)
T ss_pred cHHHh--cccccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcc--hHHHHHHHHHHHHhhccccCCCEEEEee
Confidence 76665 4567889999999999999888999999999999876443211 122345566666553 577999999
Q ss_pred cChHHHHHHhhccHHHHh--ccc-cEEecCCCHHHHHHHHHHHHHHHHhhcCCccC-HHHHHHHHHhhhcccccCcchhh
Q 003088 430 TTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFT-LEAINAAVHLSARYISDRYLPDK 505 (849)
Q Consensus 430 t~~~~~~~~~~~d~al~~--Rf~-~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~-~~~l~~~a~ls~~~~~~r~~p~~ 505 (849)
||..+ .+|+++++ ||. .+.++.|+.++|.+||+.... +..+. +..+..++..+++|.. ..
T Consensus 321 tn~~~-----~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~------~~~l~~d~~l~~la~~t~G~~g-----ad 384 (733)
T TIGR01243 321 TNRPD-----ALDPALRRPGRFDREIVIRVPDKRARKEILKVHTR------NMPLAEDVDLDKLAEVTHGFVG-----AD 384 (733)
T ss_pred cCChh-----hcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhc------CCCCccccCHHHHHHhCCCCCH-----HH
Confidence 99887 78999988 897 699999999999999985443 22332 3346778888887754 34
Q ss_pred HHHHHHHHhhHHHHhhhhchhhhhhhhcCCCCchHHHHHHHHHHhHHHHHhcccccchhhhccCCcchhHHhccCCCCCC
Q 003088 506 AIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASD 585 (849)
Q Consensus 506 ai~ll~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (849)
...++.+|+..+..+...... . ... . ... ...
T Consensus 385 l~~l~~~a~~~al~r~~~~~~-~------------------------------~~~------~---------~~i--~~~ 416 (733)
T TIGR01243 385 LAALAKEAAMAALRRFIREGK-I------------------------------NFE------A---------EEI--PAE 416 (733)
T ss_pred HHHHHHHHHHHHHHHHhhccc-c------------------------------ccc------c---------ccc--cch
Confidence 444555554433211100000 0 000 0 000 000
Q ss_pred CCCCCccCHhHHHHHHHhHhCCCcccCCHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHh--------hcCCCCCCC
Q 003088 586 DDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRS--------RVGLKDPNR 657 (849)
Q Consensus 586 ~~~~~~v~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~i~Gq~~~i~~l~~~l~~~--------~~g~~~~~~ 657 (849)
......++..++..++...... .+.+ ........-.+.+.|++.+++.+...+... ..|...|
T Consensus 417 ~~~~~~v~~~df~~Al~~v~ps---~~~~----~~~~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~-- 487 (733)
T TIGR01243 417 VLKELKVTMKDFMEALKMVEPS---AIRE----VLVEVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPP-- 487 (733)
T ss_pred hcccccccHHHHHHHHhhcccc---ccch----hhccccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCC--
Confidence 1112346666666665433211 0000 000111112356889999988888877531 2233322
Q ss_pred CCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccccccCCCCCccccccC--cchhHHHHhCCCeEE
Q 003088 658 PTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEG--GLLTEAIRRRPFTLL 735 (849)
Q Consensus 658 p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~vg~~~~--~~l~~~i~~~~~~vl 735 (849)
..+||+||||||||++|+++|..+ +.+|+.++++++.. .|+|+.+. ..++...+...++||
T Consensus 488 --~giLL~GppGtGKT~lakalA~e~---~~~fi~v~~~~l~~------------~~vGese~~i~~~f~~A~~~~p~ii 550 (733)
T TIGR01243 488 --KGVLLFGPPGTGKTLLAKAVATES---GANFIAVRGPEILS------------KWVGESEKAIREIFRKARQAAPAII 550 (733)
T ss_pred --ceEEEECCCCCCHHHHHHHHHHhc---CCCEEEEehHHHhh------------cccCcHHHHHHHHHHHHHhcCCEEE
Confidence 349999999999999999999986 67899999887654 26666553 223444456667999
Q ss_pred EEeCccccC------------HHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCchhhhcccCCccccccccCCc
Q 003088 736 LLDEIEKAH------------PDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNES 803 (849)
Q Consensus 736 ~lDEid~l~------------~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~ 803 (849)
||||||.+. ..+.+.|+..|+.-. ...+++||+|||....
T Consensus 551 fiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~---------~~~~v~vI~aTn~~~~------------------- 602 (733)
T TIGR01243 551 FFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQ---------ELSNVVVIAATNRPDI------------------- 602 (733)
T ss_pred EEEChhhhhccCCCCCCccHHHHHHHHHHHHhhccc---------CCCCEEEEEeCCChhh-------------------
Confidence 999999873 246788898887511 2347899999997421
Q ss_pred ccHHhHHHHHHHHHHhhCChHHhh--ccccEEEcCCCCHHHHccccC
Q 003088 804 TSYAGMKTLVVEELKAYFRPELLN--RIDEVVVFRSLEKAQVCQLPL 848 (849)
Q Consensus 804 ~~~~~~~~~~~~~l~~~~~pell~--R~d~~i~f~pl~~~~~~~I~~ 848 (849)
++|+++. |||.+|.|++++.++..+|++
T Consensus 603 -----------------ld~allRpgRfd~~i~v~~Pd~~~R~~i~~ 632 (733)
T TIGR01243 603 -----------------LDPALLRPGRFDRLILVPPPDEEARKEIFK 632 (733)
T ss_pred -----------------CCHhhcCCCccceEEEeCCcCHHHHHHHHH
Confidence 7888885 999999999999999888864
No 12
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=8.7e-31 Score=290.26 Aligned_cols=381 Identities=19% Similarity=0.288 Sum_probs=255.2
Q ss_pred CCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEE
Q 003088 309 RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFI 388 (849)
Q Consensus 309 ~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~~~~~~g~~e~~l~~l~~~~~~~~~~ILfI 388 (849)
....|+||+||+|+|||.+|++++.++... ..+.+..++++.+-. .+ ...+...++.+|.++....|+|+++
T Consensus 429 ~~~~~Ill~G~~GsGKT~L~kal~~~~~k~------~~~hv~~v~Cs~l~~-~~-~e~iQk~l~~vfse~~~~~PSiIvL 500 (952)
T KOG0735|consen 429 FRHGNILLNGPKGSGKTNLVKALFDYYSKD------LIAHVEIVSCSTLDG-SS-LEKIQKFLNNVFSEALWYAPSIIVL 500 (952)
T ss_pred cccccEEEeCCCCCCHhHHHHHHHHHhccc------cceEEEEEechhccc-hh-HHHHHHHHHHHHHHHHhhCCcEEEE
Confidence 356799999999999999999999998522 145666777766542 22 5667788889999999999999999
Q ss_pred cCcchhhhCCCCCCCCCC-ccHHH----HHHHhhhhcCCC-eEEEEccChHHHHHHhhccHHHHh--ccc-cEEecCCCH
Q 003088 389 DEVHTLIGSGTVGRGNKG-TGLDI----SNLLKPSLGRGE-LQCIASTTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQ 459 (849)
Q Consensus 389 DEi~~l~~~~~~~~~~~~-~~~~~----~~~L~~~le~~~-i~vI~at~~~~~~~~~~~d~al~~--Rf~-~i~~~~ps~ 459 (849)
|++|.|++..+...+..+ ..... .+.++.+++++. +.+|++....+ .+++-|.+ +|+ ++.++.|..
T Consensus 501 Ddld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~q-----tl~~~L~s~~~Fq~~~~L~ap~~ 575 (952)
T KOG0735|consen 501 DDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQ-----TLNPLLVSPLLFQIVIALPAPAV 575 (952)
T ss_pred cchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhh-----hcChhhcCccceEEEEecCCcch
Confidence 999999873332111100 01111 133344455554 58888887765 77887776 787 699999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhcccccCcchhhHHHHHHHHhhHHHHhhhhchhhhhhhhcCCCCch
Q 003088 460 EDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDD 539 (849)
Q Consensus 460 ~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~~~r~~p~~ai~ll~~a~~~~~~~~~~~~~~~~~~~l~~~~~~ 539 (849)
.+|.+||+.+++ +....+..+.++.++..+++|.. .+..-+++.|...+..+....
T Consensus 576 ~~R~~IL~~~~s----~~~~~~~~~dLd~ls~~TEGy~~-----~DL~ifVeRai~~a~leris~--------------- 631 (952)
T KOG0735|consen 576 TRRKEILTTIFS----KNLSDITMDDLDFLSVKTEGYLA-----TDLVIFVERAIHEAFLERISN--------------- 631 (952)
T ss_pred hHHHHHHHHHHH----hhhhhhhhHHHHHHHHhcCCccc-----hhHHHHHHHHHHHHHHHHhcc---------------
Confidence 999999999887 33456677778888888888764 456666777765544221111
Q ss_pred HHHHHHHHHHhHHHHHhcccccchhhhccCCcchhHHhccCCCCCCCCCCCccCHhHHHHHHHhHh-----CCCc---cc
Q 003088 540 YWQEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWS-----GIPV---QQ 611 (849)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~-----g~~~---~~ 611 (849)
....++.+++.+.++... |+.. ..
T Consensus 632 ------------------------------------------------~~klltke~f~ksL~~F~P~aLR~ik~~k~tg 663 (952)
T KOG0735|consen 632 ------------------------------------------------GPKLLTKELFEKSLKDFVPLALRGIKLVKSTG 663 (952)
T ss_pred ------------------------------------------------CcccchHHHHHHHHHhcChHHhhhccccccCC
Confidence 001344555555544332 2211 11
Q ss_pred CCHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHhhc----CCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCC
Q 003088 612 ITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRV----GLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSE 687 (849)
Q Consensus 612 ~~~~~~~~~~~l~~~l~~~i~Gq~~~i~~l~~~l~~~~~----g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~ 687 (849)
+.|++ |.|..++++.+.+.+..... -...|-+-...+|+|||||||||++|.++|... +
T Consensus 664 i~w~d--------------igg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~---~ 726 (952)
T KOG0735|consen 664 IRWED--------------IGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNS---N 726 (952)
T ss_pred CCcee--------------cccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhC---C
Confidence 34444 44455555555444432110 011222223459999999999999999999884 7
Q ss_pred CceeEeeccccccccccccccCCCCCccccccCc--chhHHHHhCCCeEEEEeCccccCHH-----------HHHHHHHH
Q 003088 688 SSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGG--LLTEAIRRRPFTLLLLDEIEKAHPD-----------IFNILLQV 754 (849)
Q Consensus 688 ~~~i~i~~~~~~~~~~~~~l~g~~~g~vg~~~~~--~l~~~i~~~~~~vl~lDEid~l~~~-----------~~~~Ll~~ 754 (849)
..||.+.++++..+ |+|.+|.+ .+++..+.+.+|||||||+|++.|. +.|+||..
T Consensus 727 ~~fisvKGPElL~K------------yIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTe 794 (952)
T KOG0735|consen 727 LRFISVKGPELLSK------------YIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTE 794 (952)
T ss_pred eeEEEecCHHHHHH------------HhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHh
Confidence 78999999998764 66666533 2444445566799999999999763 99999999
Q ss_pred hhcCeeecCCCceeecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHh--hccccE
Q 003088 755 FEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELL--NRIDEV 832 (849)
Q Consensus 755 le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell--~R~d~~ 832 (849)
||.-+- ..-+.|+++|..+ + .++|+|+ .|+|..
T Consensus 795 lDG~Eg---------l~GV~i~aaTsRp-d-----------------------------------liDpALLRpGRlD~~ 829 (952)
T KOG0735|consen 795 LDGAEG---------LDGVYILAATSRP-D-----------------------------------LIDPALLRPGRLDKL 829 (952)
T ss_pred hccccc---------cceEEEEEecCCc-c-----------------------------------ccCHhhcCCCcccee
Confidence 987431 1234444444431 1 1788888 899999
Q ss_pred EEcCCCCHHHHccccC
Q 003088 833 VVFRSLEKAQVCQLPL 848 (849)
Q Consensus 833 i~f~pl~~~~~~~I~~ 848 (849)
|..+.+++.+..+|++
T Consensus 830 v~C~~P~~~eRl~il~ 845 (952)
T KOG0735|consen 830 VYCPLPDEPERLEILQ 845 (952)
T ss_pred eeCCCCCcHHHHHHHH
Confidence 9999999888887764
No 13
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2e-30 Score=290.17 Aligned_cols=394 Identities=21% Similarity=0.309 Sum_probs=266.7
Q ss_pred ccccHHHHHHHHHHHhcCCC---------CCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhcccc
Q 003088 292 VIGRETEIQRIIQILCRRTK---------NNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAK 362 (849)
Q Consensus 292 iiG~~~~i~~l~~~l~~~~~---------~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~~~~ 362 (849)
.-+++..+..+.+++..+.. ..+||+|+||||||++++++|.++ +.+++++|+.++....
T Consensus 403 ~~~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~l----------g~h~~evdc~el~~~s- 471 (953)
T KOG0736|consen 403 PPGLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASEL----------GLHLLEVDCYELVAES- 471 (953)
T ss_pred CccchHHHHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHh----------CCceEeccHHHHhhcc-
Confidence 34566666677777755432 346999999999999999999999 8999999999998655
Q ss_pred ccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhc-------CCCeEEEEccChHHH
Q 003088 363 ERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG-------RGELQCIASTTQDEH 435 (849)
Q Consensus 363 ~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le-------~~~i~vI~at~~~~~ 435 (849)
.+-.|.++..++..++...|+|||+-++|.+.-+.+. +....++..+...++ .+.+++|++++..+
T Consensus 472 -~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dg-----ged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~- 544 (953)
T KOG0736|consen 472 -ASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDG-----GEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIE- 544 (953)
T ss_pred -cchhHHHHHHHHHHHhhcCceEEEEeccceeeecCCC-----chhHHHHHHHHHHHhcccccCCCCceEEEEeccccc-
Confidence 5678899999999999999999999999999532221 234445555555554 35689999999887
Q ss_pred HHHhhccHHHHhccc-cEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHH-HHHHHHHhhhcccccCcchhhHHHHHHHH
Q 003088 436 RTQFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLE-AINAAVHLSARYISDRYLPDKAIDLVDEA 513 (849)
Q Consensus 436 ~~~~~~d~al~~Rf~-~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~-~l~~~a~ls~~~~~~r~~p~~ai~ll~~a 513 (849)
.+.+.+++-|. .|.++.|+++||.+||+.+.. ++ .+..+ .+..++..+.+|.. ...-.++...
T Consensus 545 ----~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~----~~--~~n~~v~~k~~a~~t~gfs~-----~~L~~l~~~~ 609 (953)
T KOG0736|consen 545 ----DLPADIQSLFLHEIEVPALSEEQRLEILQWYLN----HL--PLNQDVNLKQLARKTSGFSF-----GDLEALVAHS 609 (953)
T ss_pred ----cCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHh----cc--ccchHHHHHHHHHhcCCCCH-----HHHHHHhcCc
Confidence 88899999774 799999999999999988776 22 23332 34455555555432 2222222111
Q ss_pred hhHHHHhhhhchhhhhhhhcCCCCchHHHHHHHHHHhHHHHHhcccccchhhhccCCcchhHHhccCCCCCCCCCCCccC
Q 003088 514 GSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVG 593 (849)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 593 (849)
...+. +... +... .+.+ .+............++
T Consensus 610 s~~~~---------------------------~~i~------~~~l---~g~~-----------~~~~~~~~~~~~~~l~ 642 (953)
T KOG0736|consen 610 SLAAK---------------------------TRIK------NKGL---AGGL-----------QEEDEGELCAAGFLLT 642 (953)
T ss_pred hHHHH---------------------------HHHH------hhcc---cccc-----------hhccccccccccceec
Confidence 00000 0000 0000 0000 0000111222336688
Q ss_pred HhHHHHHHHhHh-------CC-CcccCCHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHH-------hhcCCCCCCCC
Q 003088 594 PDDIAAVASLWS-------GI-PVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKR-------SRVGLKDPNRP 658 (849)
Q Consensus 594 ~~~i~~~~~~~~-------g~-~~~~~~~~~~~~~~~l~~~l~~~i~Gq~~~i~~l~~~l~~-------~~~g~~~~~~p 658 (849)
.+|+.+.+++.. |- .+.++.|++ |-|.++++..|.+.++. --.|+++
T Consensus 643 ~edf~kals~~~~~fs~aiGAPKIPnV~WdD--------------VGGLeevK~eIldTIqlPL~hpeLfssglrk---- 704 (953)
T KOG0736|consen 643 EEDFDKALSRLQKEFSDAIGAPKIPNVSWDD--------------VGGLEEVKTEILDTIQLPLKHPELFSSGLRK---- 704 (953)
T ss_pred HHHHHHHHHHHHHhhhhhcCCCCCCccchhc--------------ccCHHHHHHHHHHHhcCcccChhhhhccccc----
Confidence 888888877432 33 234566655 55556666666666543 1223331
Q ss_pred CccceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccccccCCCCCccccccCc--chhHHHHhCCCeEEE
Q 003088 659 TAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGG--LLTEAIRRRPFTLLL 736 (849)
Q Consensus 659 ~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~vg~~~~~--~l~~~i~~~~~~vl~ 736 (849)
...+|||||||||||.+||++|... ...|+.+.++|+.+ .|||++|.. .+++..+.+.+||||
T Consensus 705 RSGILLYGPPGTGKTLlAKAVATEc---sL~FlSVKGPELLN------------MYVGqSE~NVR~VFerAR~A~PCVIF 769 (953)
T KOG0736|consen 705 RSGILLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELLN------------MYVGQSEENVREVFERARSAAPCVIF 769 (953)
T ss_pred cceeEEECCCCCchHHHHHHHHhhc---eeeEEeecCHHHHH------------HHhcchHHHHHHHHHHhhccCCeEEE
Confidence 2249999999999999999999985 67899999999877 489988753 245555667789999
Q ss_pred EeCccccCHH-------------HHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCchhhhcccCCccccccccCCc
Q 003088 737 LDEIEKAHPD-------------IFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNES 803 (849)
Q Consensus 737 lDEid~l~~~-------------~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~ 803 (849)
|||+|++.|. ++.+||-.||. +.++ +..+++||.+||.+-
T Consensus 770 FDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDg--ls~~-----~s~~VFViGATNRPD-------------------- 822 (953)
T KOG0736|consen 770 FDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDG--LSDS-----SSQDVFVIGATNRPD-------------------- 822 (953)
T ss_pred eccccccCccCCCCCCccccHHHHHHHHHHHhhc--ccCC-----CCCceEEEecCCCcc--------------------
Confidence 9999999874 88999999986 1111 245788999999742
Q ss_pred ccHHhHHHHHHHHHHhhCChHHh--hccccEEEcCCCCHH
Q 003088 804 TSYAGMKTLVVEELKAYFRPELL--NRIDEVVVFRSLEKA 841 (849)
Q Consensus 804 ~~~~~~~~~~~~~l~~~~~pell--~R~d~~i~f~pl~~~ 841 (849)
.++|.|+ .|||..+...|-+.+
T Consensus 823 ----------------LLDpALLRPGRFDKLvyvG~~~d~ 846 (953)
T KOG0736|consen 823 ----------------LLDPALLRPGRFDKLVYVGPNEDA 846 (953)
T ss_pred ----------------ccChhhcCCCccceeEEecCCccH
Confidence 1678887 899888877776643
No 14
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.1e-26 Score=250.18 Aligned_cols=352 Identities=21% Similarity=0.274 Sum_probs=231.4
Q ss_pred HHHhcCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhccccccchHHHHHHHHHHHHHh---
Q 003088 304 QILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK--- 380 (849)
Q Consensus 304 ~~l~~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~~~~~~g~~e~~l~~l~~~~~~--- 380 (849)
+-+...+...+|||||||||||.+||.|...++. ..|.+..+- .++ .+|.|+.|+.++++|..+++
T Consensus 249 e~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNA-rePKIVNGP--------eIL--~KYVGeSE~NvR~LFaDAEeE~r 317 (744)
T KOG0741|consen 249 EQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNA-REPKIVNGP--------EIL--NKYVGESEENVRKLFADAEEEQR 317 (744)
T ss_pred HHcCccceeeEEEECCCCCChhHHHHHHHHHhcC-CCCcccCcH--------HHH--HHhhcccHHHHHHHHHhHHHHHH
Confidence 3445566678899999999999999999998854 344444332 222 58899999999999998874
Q ss_pred -----cCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcC----CCeEEEEccChHHHHHHhhccHHHHh--cc
Q 003088 381 -----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR----GELQCIASTTQDEHRTQFEKDKALAR--RF 449 (849)
Q Consensus 381 -----~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~----~~i~vI~at~~~~~~~~~~~d~al~~--Rf 449 (849)
++=.|+++||||.++..++...|+.+-...+.|.|+.-++. +++.+||.||..+ -+|.||+| ||
T Consensus 318 ~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR~D-----lIDEALLRPGRl 392 (744)
T KOG0741|consen 318 RLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNRKD-----LIDEALLRPGRL 392 (744)
T ss_pred hhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCchh-----hHHHHhcCCCce
Confidence 23369999999999998777666555667788888876653 6799999999998 78999999 99
Q ss_pred c-cEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhcccccCcchhhHHHHHHHHhhHHHHhhhhchhhh
Q 003088 450 Q-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQ 528 (849)
Q Consensus 450 ~-~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~~~r~~p~~ai~ll~~a~~~~~~~~~~~~~~~ 528 (849)
. .+++..|++.-|++||+-...++..+..+. ++-.+..++.++..|.. .....++..|.+.+..+.-....
T Consensus 393 EVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~-~dVdl~elA~lTKNfSG-----AEleglVksA~S~A~nR~vk~~~-- 464 (744)
T KOG0741|consen 393 EVQMEISLPDEKGRLQILKIHTKRMRENNKLS-ADVDLKELAALTKNFSG-----AELEGLVKSAQSFAMNRHVKAGG-- 464 (744)
T ss_pred EEEEEEeCCCccCceEEEEhhhhhhhhcCCCC-CCcCHHHHHHHhcCCch-----hHHHHHHHHHHHHHHHhhhccCc--
Confidence 8 599999999999999998877775443222 22346778888887654 45566777666554322211100
Q ss_pred hhhhcCCCCchHHHHHHHHHHhHHHHHhcccccchhhhccCCcchhHHhccCCCCCCCCCCCccCHhHHHHHHHhHhCCC
Q 003088 529 QTCILSKPPDDYWQEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIP 608 (849)
Q Consensus 529 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~g~~ 608 (849)
. ........+...|+..|+-.+++... |
T Consensus 465 -------------------------------~-------------------~~~~~~~~e~lkV~r~DFl~aL~dVk--P 492 (744)
T KOG0741|consen 465 -------------------------------K-------------------VEVDPVAIENLKVTRGDFLNALEDVK--P 492 (744)
T ss_pred -------------------------------c-------------------eecCchhhhheeecHHHHHHHHHhcC--c
Confidence 0 00001122335677777777776322 3
Q ss_pred cccCCHHHHHHHHHHHHHHhcc-ccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCC
Q 003088 609 VQQITADERMLLVGLEEQLKKR-VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSE 687 (849)
Q Consensus 609 ~~~~~~~~~~~~~~l~~~l~~~-i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~ 687 (849)
....++++.. ..+... +.+-+.+-+-+.+.......-......|..++||.||||+|||.+|-.+|.. ++
T Consensus 493 AFG~see~l~------~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~~---S~ 563 (744)
T KOG0741|consen 493 AFGISEEDLE------RFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAAKIALS---SD 563 (744)
T ss_pred ccCCCHHHHH------HHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHHHHHHhh---cC
Confidence 3333333322 233332 3333333333333322222222223556778999999999999999999986 58
Q ss_pred CceeEeeccccccccccccccCCCCCccccccCc------chhHHHHhCCCeEEEEeCcccc------CHHHHHHHHHHh
Q 003088 688 SSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGG------LLTEAIRRRPFTLLLLDEIEKA------HPDIFNILLQVF 755 (849)
Q Consensus 688 ~~~i~i~~~~~~~~~~~~~l~g~~~g~vg~~~~~------~l~~~i~~~~~~vl~lDEid~l------~~~~~~~Ll~~l 755 (849)
.||+.+-.++- .+|.+|.. ..++-.-+++-+||++|+|+.+ .|..-|.++|+|
T Consensus 564 FPFvKiiSpe~---------------miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL 628 (744)
T KOG0741|consen 564 FPFVKIISPED---------------MIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQAL 628 (744)
T ss_pred CCeEEEeChHH---------------ccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhcccccCchhhHHHHHHH
Confidence 89988765442 34444421 1222234567799999999977 455555555554
No 15
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.91 E-value=4.7e-24 Score=236.20 Aligned_cols=215 Identities=26% Similarity=0.405 Sum_probs=166.2
Q ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHhhcCCCC----CC-----CCCccceeecCCCCchHHHHHHHHHHhcCCCCc
Q 003088 619 LLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKD----PN-----RPTAAMLFCGPTGVGKTELAKSLAACYFGSESS 689 (849)
Q Consensus 619 ~~~~l~~~l~~~i~Gq~~~i~~l~~~l~~~~~g~~~----~~-----~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~ 689 (849)
.+..++..|.+.|+||+++++.+..++..++.++.. +. .+..++||+||||||||++|++||+.+ +.+
T Consensus 67 ~p~~i~~~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l---~~p 143 (413)
T TIGR00382 67 TPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARIL---NVP 143 (413)
T ss_pred CHHHHHHHhcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhc---CCC
Confidence 467888999999999999999999888654444322 11 124689999999999999999999886 567
Q ss_pred eeEeeccccccccccccccCCCCCccccccCcchhHHHHh-------CCCeEEEEeCccccCH--------------HHH
Q 003088 690 MLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRR-------RPFTLLLLDEIEKAHP--------------DIF 748 (849)
Q Consensus 690 ~i~i~~~~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~i~~-------~~~~vl~lDEid~l~~--------------~~~ 748 (849)
|..+++..+. ++||+|++..+.+.++++. +.++||||||||++++ .+|
T Consensus 144 f~~~da~~L~-----------~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq 212 (413)
T TIGR00382 144 FAIADATTLT-----------EAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQ 212 (413)
T ss_pred eEEechhhcc-----------ccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHH
Confidence 8888876542 3568888766666666543 4457999999999987 699
Q ss_pred HHHHHHhhcCeeec---CCCceeecCCeEEEEecCC---------Cchhhhcc--cCCccccccccCCc--ccHHhHHHH
Q 003088 749 NILLQVFEDGHLTD---SHGRRVSFKNALIVMTSNV---------GSTTIAKG--RHGSIGFLLEDNES--TSYAGMKTL 812 (849)
Q Consensus 749 ~~Ll~~le~g~~~~---~~g~~~~~~~~~iI~tsn~---------~~~~l~~~--~~~~~gf~~~~~~~--~~~~~~~~~ 812 (849)
+.||++|| |.+++ .+|+++++.++++|+|+|. |++.+... ....+||..+.... ...+.+...
T Consensus 213 ~~LL~iLe-G~~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~ 291 (413)
T TIGR00382 213 QALLKIIE-GTVANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQV 291 (413)
T ss_pred HHHHHHhh-ccceecccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHH
Confidence 99999995 78765 5788999999999999999 66554432 22368887532211 112445667
Q ss_pred HHHHHHhh-CChHHhhccccEEEcCCCCHHHHccccC
Q 003088 813 VVEELKAY-FRPELLNRIDEVVVFRSLEKAQVCQLPL 848 (849)
Q Consensus 813 ~~~~l~~~-~~pell~R~d~~i~f~pl~~~~~~~I~~ 848 (849)
..+++.++ |.|||++|+|.++.|.||+.+++.+|+.
T Consensus 292 ~~~dl~~~g~~PEflgRld~Iv~f~pL~~~~L~~Il~ 328 (413)
T TIGR00382 292 EPEDLVKFGLIPEFIGRLPVIATLEKLDEEALIAILT 328 (413)
T ss_pred HHHHHHHHhhHHHHhCCCCeEeecCCCCHHHHHHHHH
Confidence 78888887 9999999999999999999999999975
No 16
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.91 E-value=8.8e-24 Score=223.99 Aligned_cols=198 Identities=26% Similarity=0.351 Sum_probs=160.8
Q ss_pred hhhHHHHhhcCCCCccccHHHH---HHHHHHHhcCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeeh
Q 003088 278 VDLTARASEELIDPVIGRETEI---QRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM 354 (849)
Q Consensus 278 ~~l~~~~~~~~l~~iiG~~~~i---~~l~~~l~~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~ 354 (849)
.+|..++||.+|+++|||++.+ .-+..++......+++|||||||||||+|+.||+.. ++.+..++
T Consensus 12 ~PLA~rmRP~~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~----------~~~f~~~s- 80 (436)
T COG2256 12 MPLAERLRPKSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTT----------NAAFEALS- 80 (436)
T ss_pred cChHHHhCCCCHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhh----------CCceEEec-
Confidence 4899999999999999999888 346677888899999999999999999999999988 66676653
Q ss_pred hhhhccccccchHHHHHHHHHHHHHh----cCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCCCeEEEEcc
Q 003088 355 GLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIAST 430 (849)
Q Consensus 355 ~~~~~~~~~~g~~e~~l~~l~~~~~~----~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~~i~vI~at 430 (849)
+...+.++ ++.+++++++ +...||||||||++ ....|+.|++.+|+|.+++||||
T Consensus 81 -Av~~gvkd-------lr~i~e~a~~~~~~gr~tiLflDEIHRf-------------nK~QQD~lLp~vE~G~iilIGAT 139 (436)
T COG2256 81 -AVTSGVKD-------LREIIEEARKNRLLGRRTILFLDEIHRF-------------NKAQQDALLPHVENGTIILIGAT 139 (436)
T ss_pred -cccccHHH-------HHHHHHHHHHHHhcCCceEEEEehhhhc-------------ChhhhhhhhhhhcCCeEEEEecc
Confidence 44444433 7777777754 34689999999999 23457899999999999999999
Q ss_pred ChHHHHHHhhccHHHHhccccEEecCCCHHHHHHHHHHHHHHHHhh---cCCccCHHHHHHHHHhhhcccccCcchhhHH
Q 003088 431 TQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAH---HNCKFTLEAINAAVHLSARYISDRYLPDKAI 507 (849)
Q Consensus 431 ~~~~~~~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL~~~~~~~~~~---~~~~i~~~~l~~~a~ls~~~~~~r~~p~~ai 507 (849)
|.++ +|+++++|++|++++.+.+++.++..++|.......+.. ..+.++++++..++..+++... .+.
T Consensus 140 TENP---sF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R------~aL 210 (436)
T COG2256 140 TENP---SFELNPALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDAR------RAL 210 (436)
T ss_pred CCCC---CeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHH------HHH
Confidence 9996 799999999999999999999999999998844332211 2244899999999999998543 566
Q ss_pred HHHHHHhhH
Q 003088 508 DLVDEAGSR 516 (849)
Q Consensus 508 ~ll~~a~~~ 516 (849)
..++.+...
T Consensus 211 N~LE~~~~~ 219 (436)
T COG2256 211 NLLELAALS 219 (436)
T ss_pred HHHHHHHHh
Confidence 666666543
No 17
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=2.6e-22 Score=233.38 Aligned_cols=376 Identities=23% Similarity=0.296 Sum_probs=243.9
Q ss_pred HHHHhcCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhccccccchHHHHHHHHHHHHHhcC
Q 003088 303 IQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSG 382 (849)
Q Consensus 303 ~~~l~~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~~~~~~g~~e~~l~~l~~~~~~~~ 382 (849)
.+.+......+++++||||+|||.++++++.. ...+ ..++..... .++.|+.+..+..++..++...
T Consensus 10 ~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~---~~~~--------~~~~~~~~~--~~~~~~~~~~~~~~~~~a~~~~ 76 (494)
T COG0464 10 FKKLGIEPPKGVLLHGPPGTGKTLLARALANE---GAEF--------LSINGPEIL--SKYVGESELRLRELFEEAEKLA 76 (494)
T ss_pred HHHhCCCCCCCceeeCCCCCchhHHHHHHHhc---cCcc--------cccCcchhh--hhhhhHHHHHHHHHHHHHHHhC
Confidence 34445567788999999999999999999987 1111 122222222 4567899999999999999988
Q ss_pred CeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhc---CCCeEEEEccChHHHHHHhhccHHHHh--ccc-cEEecC
Q 003088 383 DVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG---RGELQCIASTTQDEHRTQFEKDKALAR--RFQ-PVLISE 456 (849)
Q Consensus 383 ~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le---~~~i~vI~at~~~~~~~~~~~d~al~~--Rf~-~i~~~~ 456 (849)
++++++||++.+.+...... ......+...+...+. ++.+.+++.++... .+++++++ ||. .+.+..
T Consensus 77 ~~ii~~d~~~~~~~~~~~~~--~~~~~~v~~~l~~~~d~~~~~~v~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~ 149 (494)
T COG0464 77 PSIIFIDEIDALAPKRSSDQ--GEVERRVVAQLLALMDGLKRGQVIVIGATNRPD-----GLDPAKRRPGRFDREIEVNL 149 (494)
T ss_pred CCeEeechhhhcccCccccc--cchhhHHHHHHHHhcccccCCceEEEeecCCcc-----ccChhHhCccccceeeecCC
Confidence 89999999999987654411 1223334444443333 34477777777765 78888887 886 599999
Q ss_pred CCHHHHHHHHHHHHHHHHhhcCCccC-HHHHHHHHHhhhcccccCcchhhHHHHHHHHhhHHHHhhhhchhhhhhhhcCC
Q 003088 457 PSQEDAVRILLGLREKYEAHHNCKFT-LEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSK 535 (849)
Q Consensus 457 ps~~e~~~iL~~~~~~~~~~~~~~i~-~~~l~~~a~ls~~~~~~r~~p~~ai~ll~~a~~~~~~~~~~~~~~~~~~~l~~ 535 (849)
|+...+.+|+....... .+. +..+..++..+.+|.. .+...+..++......+..
T Consensus 150 ~~~~~~~ei~~~~~~~~------~~~~~~~~~~~a~~~~~~~~-----~~~~~l~~~~~~~~~~r~~------------- 205 (494)
T COG0464 150 PDEAGRLEILQIHTRLM------FLGPPGTGKTLAARTVGKSG-----ADLGALAKEAALRELRRAI------------- 205 (494)
T ss_pred CCHHHHHHHHHHHHhcC------CCcccccHHHHHHhcCCccH-----HHHHHHHHHHHHHHHHhhh-------------
Confidence 99998888887654321 121 3445666666666543 2333333333222211110
Q ss_pred CCchHHHHHHHHHHhHHHHHhcccccchhhhccCCcchhHHhccCCCCCCCCCCCccCHhHHHHHHHhHhC-----CCcc
Q 003088 536 PPDDYWQEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSG-----IPVQ 610 (849)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~g-----~~~~ 610 (849)
........++..++.+.+....+ ....
T Consensus 206 ------------------------------------------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 237 (494)
T COG0464 206 ------------------------------------------------DLVGEYIGVTEDDFEEALKKVLPSRGVLFEDE 237 (494)
T ss_pred ------------------------------------------------ccCcccccccHHHHHHHHHhcCcccccccCCC
Confidence 00011134555555555555432 1222
Q ss_pred cCCHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHh--------hcCCCCCCCCCccceeecCCCCchHHHHHHHHHH
Q 003088 611 QITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRS--------RVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAAC 682 (849)
Q Consensus 611 ~~~~~~~~~~~~l~~~l~~~i~Gq~~~i~~l~~~l~~~--------~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~ 682 (849)
...|.+ +.|.+.+++.+...+... ..|..+ ...+||+||||||||++|+++|..
T Consensus 238 ~v~~~d--------------iggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~----~~giLl~GpPGtGKT~lAkava~~ 299 (494)
T COG0464 238 DVTLDD--------------IGGLEEAKEELKEAIETPLKRPELFRKLGLRP----PKGVLLYGPPGTGKTLLAKAVALE 299 (494)
T ss_pred Ccceeh--------------hhcHHHHHHHHHHHHHhHhhChHHHHhcCCCC----CCeeEEECCCCCCHHHHHHHHHhh
Confidence 333333 333344444444433221 123333 235999999999999999999997
Q ss_pred hcCCCCceeEeeccccccccccccccCCCCCccccccCc--chhHHHHhCCCeEEEEeCccccC-----------HHHHH
Q 003088 683 YFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGG--LLTEAIRRRPFTLLLLDEIEKAH-----------PDIFN 749 (849)
Q Consensus 683 l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~vg~~~~~--~l~~~i~~~~~~vl~lDEid~l~-----------~~~~~ 749 (849)
+ +.+|+.++++++..+ |+|+.+.. .++...++...|||||||+|++- ..+++
T Consensus 300 ~---~~~fi~v~~~~l~sk------------~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~ 364 (494)
T COG0464 300 S---RSRFISVKGSELLSK------------WVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVG 364 (494)
T ss_pred C---CCeEEEeeCHHHhcc------------ccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHH
Confidence 5 778999999977653 67776632 23334445567999999999882 26899
Q ss_pred HHHHHhhcCeeecCCCceeecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhh--
Q 003088 750 ILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLN-- 827 (849)
Q Consensus 750 ~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~-- 827 (849)
.|+..|+.-. ...++++|.+||.... ++|+++.
T Consensus 365 ~lL~~~d~~e---------~~~~v~vi~aTN~p~~------------------------------------ld~a~lR~g 399 (494)
T COG0464 365 QLLTELDGIE---------KAEGVLVIAATNRPDD------------------------------------LDPALLRPG 399 (494)
T ss_pred HHHHHhcCCC---------ccCceEEEecCCCccc------------------------------------cCHhhcccC
Confidence 9999997522 2346889999997421 7888888
Q ss_pred ccccEEEcCCCCHHHHccccC
Q 003088 828 RIDEVVVFRSLEKAQVCQLPL 848 (849)
Q Consensus 828 R~d~~i~f~pl~~~~~~~I~~ 848 (849)
|||.++.|++++.++..+|++
T Consensus 400 Rfd~~i~v~~pd~~~r~~i~~ 420 (494)
T COG0464 400 RFDRLIYVPLPDLEERLEIFK 420 (494)
T ss_pred ccceEeecCCCCHHHHHHHHH
Confidence 999999999999999888874
No 18
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.90 E-value=4.1e-24 Score=211.13 Aligned_cols=155 Identities=52% Similarity=0.826 Sum_probs=131.0
Q ss_pred CCCccceeecCCCCchHHHHHHHHHHhc-CCCCceeEeecccccc----ccccccccCCCCCccccccCcchhHHHHhCC
Q 003088 657 RPTAAMLFCGPTGVGKTELAKSLAACYF-GSESSMLRLDMSEYME----RHTVSKLIGSPPGYVGYEEGGLLTEAIRRRP 731 (849)
Q Consensus 657 ~p~~~lL~~Gp~GtGKt~lA~~la~~l~-~~~~~~i~i~~~~~~~----~~~~~~l~g~~~g~vg~~~~~~l~~~i~~~~ 731 (849)
||..++||+||+|||||++|++|++.++ +...+++.+||+++.. .+.++.++|.+++|+++.+.
T Consensus 1 ~p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~v~~~~~----------- 69 (171)
T PF07724_consen 1 RPKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDDVESSVSKLLGSPPGYVGAEEG----------- 69 (171)
T ss_dssp S-SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTTCHHHHHHH-----------
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccchHHhhhhhhhhcccceeeccch-----------
Confidence 5778899999999999999999999999 8899999999999999 88888899999988886653
Q ss_pred CeEEEEeCccccCH-----------HHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCchhhhcccCCcccccccc
Q 003088 732 FTLLLLDEIEKAHP-----------DIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLED 800 (849)
Q Consensus 732 ~~vl~lDEid~l~~-----------~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~ 800 (849)
+|||||||||+++ .+|+.||++||+|++++..|+.+++.|++||+|+|.+...+..... .+
T Consensus 70 -gVVllDEidKa~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~~~~~~~~~--~~----- 141 (171)
T PF07724_consen 70 -GVVLLDEIDKAHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGAEEIIDASR--SG----- 141 (171)
T ss_dssp -TEEEEETGGGCSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSSTHHHHHCHH--HC-----
T ss_pred -hhhhhHHHhhccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccccchhhhhhc--cc-----
Confidence 3999999999999 9999999999999999999999999999999999999877654321 00
Q ss_pred CCcccHHhHHHHHHHHHHhhCChHHhhccccE
Q 003088 801 NESTSYAGMKTLVVEELKAYFRPELLNRIDEV 832 (849)
Q Consensus 801 ~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~ 832 (849)
..........+.+.++..|.|||++|||.+
T Consensus 142 --~~~~~~~~~~~~~~~~~~f~pEf~~Ri~~i 171 (171)
T PF07724_consen 142 --EAIEQEQEEQIRDLVEYGFRPEFLGRIDVI 171 (171)
T ss_dssp --TCCHHHHCHHHHHHHHHTS-HHHHTTSSEE
T ss_pred --cccHHHHHHHHHHHHHcCCCHHHHccCCcC
Confidence 122334455666778888999999999854
No 19
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=8.8e-23 Score=212.98 Aligned_cols=201 Identities=22% Similarity=0.294 Sum_probs=166.3
Q ss_pred CCCCccccHHHHHHHHHHHh-------------cCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeeh
Q 003088 288 LIDPVIGRETEIQRIIQILC-------------RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM 354 (849)
Q Consensus 288 ~l~~iiG~~~~i~~l~~~l~-------------~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~ 354 (849)
+.+++-|.+++++.+.+++. ...+..+|||||||||||.+|+++|+.. ++.++.+.-
T Consensus 149 tY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T----------~AtFIrvvg 218 (406)
T COG1222 149 TYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT----------DATFIRVVG 218 (406)
T ss_pred ChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc----------CceEEEecc
Confidence 56789999999999988762 2356789999999999999999999988 888999888
Q ss_pred hhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhc-------CCCeEEE
Q 003088 355 GLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG-------RGELQCI 427 (849)
Q Consensus 355 ~~~~~~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le-------~~~i~vI 427 (849)
+.++ .+|.|+-...++++|+.++...|+|+||||||.+-..+... +.++..++|..|..+|. ++++.||
T Consensus 219 SElV--qKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~--~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI 294 (406)
T COG1222 219 SELV--QKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDS--GTSGDREVQRTMLELLNQLDGFDPRGNVKVI 294 (406)
T ss_pred HHHH--HHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccC--CCCchHHHHHHHHHHHHhccCCCCCCCeEEE
Confidence 8887 68899999999999999999999999999999996654332 22467889988888775 6889999
Q ss_pred EccChHHHHHHhhccHHHHh--ccc-cEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhcccccCcchh
Q 003088 428 ASTTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPD 504 (849)
Q Consensus 428 ~at~~~~~~~~~~~d~al~~--Rf~-~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~~~r~~p~ 504 (849)
+|||..+ -+||||+| ||+ .|+||.|+.+.|.+||+-...++....+++ ++.++..+.++- ..
T Consensus 295 ~ATNR~D-----~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd-----~e~la~~~~g~s-----GA 359 (406)
T COG1222 295 MATNRPD-----ILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVD-----LELLARLTEGFS-----GA 359 (406)
T ss_pred EecCCcc-----ccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcC-----HHHHHHhcCCCc-----hH
Confidence 9999998 89999999 998 699999999999999998877553333333 566777777653 36
Q ss_pred hHHHHHHHHhhHH
Q 003088 505 KAIDLVDEAGSRA 517 (849)
Q Consensus 505 ~ai~ll~~a~~~~ 517 (849)
+...++.+|+..+
T Consensus 360 dlkaictEAGm~A 372 (406)
T COG1222 360 DLKAICTEAGMFA 372 (406)
T ss_pred HHHHHHHHHhHHH
Confidence 6778888887665
No 20
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.89 E-value=4.3e-23 Score=230.19 Aligned_cols=217 Identities=26% Similarity=0.384 Sum_probs=161.1
Q ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHhhcCCC-------CCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCce
Q 003088 618 MLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLK-------DPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSM 690 (849)
Q Consensus 618 ~~~~~l~~~l~~~i~Gq~~~i~~l~~~l~~~~~g~~-------~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~ 690 (849)
..+.++...|.+.|+||+.+++.+..++.....++. ....+..++||+||||||||++|+++|..+ +.+|
T Consensus 60 ~~p~~i~~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l---~~pf 136 (412)
T PRK05342 60 PTPKEIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL---DVPF 136 (412)
T ss_pred CCHHHHHHHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh---CCCc
Confidence 356778888988999999999999888743322221 112345679999999999999999999987 6789
Q ss_pred eEeeccccccccccccccCCCCCccccccCcchhHH-------HHhCCCeEEEEeCccccCHH--------------HHH
Q 003088 691 LRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEA-------IRRRPFTLLLLDEIEKAHPD--------------IFN 749 (849)
Q Consensus 691 i~i~~~~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~-------i~~~~~~vl~lDEid~l~~~--------------~~~ 749 (849)
+.++++.+.. .+|+|.+....+... +.++.++||||||||++++. +|+
T Consensus 137 ~~id~~~l~~-----------~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~ 205 (412)
T PRK05342 137 AIADATTLTE-----------AGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQ 205 (412)
T ss_pred eecchhhccc-----------CCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHH
Confidence 9999987643 368887655554443 23457899999999999763 999
Q ss_pred HHHHHhhcCee--ecCCCceeecCCeEEEEecCC---------Cchhhhcc--cCCccccccccCCccc----HHhHHHH
Q 003088 750 ILLQVFEDGHL--TDSHGRRVSFKNALIVMTSNV---------GSTTIAKG--RHGSIGFLLEDNESTS----YAGMKTL 812 (849)
Q Consensus 750 ~Ll~~le~g~~--~~~~g~~~~~~~~~iI~tsn~---------~~~~l~~~--~~~~~gf~~~~~~~~~----~~~~~~~ 812 (849)
.||++||.+.+ .+.+|++.++.++++|.|+|. +.+.+... ....+||..+...... ...+...
T Consensus 206 ~LL~~Leg~~~~v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~ 285 (412)
T PRK05342 206 ALLKILEGTVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQV 285 (412)
T ss_pred HHHHHHhcCeEEeCCCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhc
Confidence 99999986544 345677777788888888888 44443322 2246899754322111 2334455
Q ss_pred HHHHHHhh-CChHHhhccccEEEcCCCCHHHHccccC
Q 003088 813 VVEELKAY-FRPELLNRIDEVVVFRSLEKAQVCQLPL 848 (849)
Q Consensus 813 ~~~~l~~~-~~pell~R~d~~i~f~pl~~~~~~~I~~ 848 (849)
..+++.++ |.|||++|+|.++.|.||+++++.+|+.
T Consensus 286 ~~~dL~~~gf~PEflgRld~iv~f~~L~~~~L~~Il~ 322 (412)
T PRK05342 286 EPEDLIKFGLIPEFIGRLPVVATLEELDEEALVRILT 322 (412)
T ss_pred CHHHHHHHhhhHHHhCCCCeeeecCCCCHHHHHHHHH
Confidence 57778887 9999999999999999999999999874
No 21
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.88 E-value=1.4e-21 Score=194.65 Aligned_cols=195 Identities=23% Similarity=0.298 Sum_probs=150.6
Q ss_pred hHHHHhhcCCCCccccHHHHHHHH---HHHhc------CCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEE
Q 003088 280 LTARASEELIDPVIGRETEIQRII---QILCR------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIM 350 (849)
Q Consensus 280 l~~~~~~~~l~~iiG~~~~i~~l~---~~l~~------~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~ 350 (849)
..+....-+|+++||+++..++.. +.|.. +.+.|+|||||||||||++|+++|.+. +.+++
T Consensus 111 ~~e~~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~----------kvp~l 180 (368)
T COG1223 111 DREIISDITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA----------KVPLL 180 (368)
T ss_pred hhhhhccccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc----------CCceE
Confidence 334555667999999998887643 34432 457899999999999999999999987 66777
Q ss_pred EeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhc----CCCeEE
Q 003088 351 SLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG----RGELQC 426 (849)
Q Consensus 351 ~l~~~~~~~~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le----~~~i~v 426 (849)
.+....++ ..+.|+-..+++++++.+++..|||+||||+|.+.=++... .-.+.-.++.|.|+.-|+ +..++.
T Consensus 181 ~vkat~li--GehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQ-elRGDVsEiVNALLTelDgi~eneGVvt 257 (368)
T COG1223 181 LVKATELI--GEHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQ-ELRGDVSEIVNALLTELDGIKENEGVVT 257 (368)
T ss_pred EechHHHH--HHHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHH-HhcccHHHHHHHHHHhccCcccCCceEE
Confidence 77777777 45689999999999999999999999999999985322110 001224567788877664 567999
Q ss_pred EEccChHHHHHHhhccHHHHhccc-cEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhccc
Q 003088 427 IASTTQDEHRTQFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497 (849)
Q Consensus 427 I~at~~~~~~~~~~~d~al~~Rf~-~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~ 497 (849)
|++||..+ .+|+++++||. .|+|..|+.+||.+|++..++.+ .+.+.-. +..++..+.++.
T Consensus 258 IaaTN~p~-----~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~----Plpv~~~-~~~~~~~t~g~S 319 (368)
T COG1223 258 IAATNRPE-----LLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKF----PLPVDAD-LRYLAAKTKGMS 319 (368)
T ss_pred EeecCChh-----hcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhC----CCccccC-HHHHHHHhCCCC
Confidence 99999998 89999999997 69999999999999998877744 3333333 566777776653
No 22
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=9.1e-21 Score=211.73 Aligned_cols=202 Identities=22% Similarity=0.292 Sum_probs=165.8
Q ss_pred CCCCccccHHHHHHHHHHH-------------hcCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeeh
Q 003088 288 LIDPVIGRETEIQRIIQIL-------------CRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM 354 (849)
Q Consensus 288 ~l~~iiG~~~~i~~l~~~l-------------~~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~ 354 (849)
.+++|-|.++..+.+.+.+ ....+..||||||||||||++|+++|.+. ++.++++..
T Consensus 432 ~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~----------~~nFlsvkg 501 (693)
T KOG0730|consen 432 SWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEA----------GMNFLSVKG 501 (693)
T ss_pred ChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhh----------cCCeeeccC
Confidence 4667888888777777643 11345789999999999999999999998 788899888
Q ss_pred hhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhc----CCCeEEEEcc
Q 003088 355 GLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG----RGELQCIAST 430 (849)
Q Consensus 355 ~~~~~~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le----~~~i~vI~at 430 (849)
..+. .+|.|+.|..++++|+.++...|+|+|+||||.+.++++.+.+ +-+..+.+.|+..|+ ..++.||+||
T Consensus 502 pEL~--sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~--~v~~RVlsqLLtEmDG~e~~k~V~ViAAT 577 (693)
T KOG0730|consen 502 PELF--SKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSS--GVTDRVLSQLLTEMDGLEALKNVLVIAAT 577 (693)
T ss_pred HHHH--HHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCcc--chHHHHHHHHHHHcccccccCcEEEEecc
Confidence 7777 6889999999999999999999999999999999987753222 345567777777665 4579999999
Q ss_pred ChHHHHHHhhccHHHHh--ccc-cEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHH-HHHHHHHhhhcccccCcchhhH
Q 003088 431 TQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLE-AINAAVHLSARYISDRYLPDKA 506 (849)
Q Consensus 431 ~~~~~~~~~~~d~al~~--Rf~-~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~-~l~~~a~ls~~~~~~r~~p~~a 506 (849)
|.++ .+|++|.| ||+ .|+|+.|+.+.|.+||+...+ +..++++ .++.++..+++|-. .+.
T Consensus 578 NRpd-----~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~k------kmp~~~~vdl~~La~~T~g~SG-----Ael 641 (693)
T KOG0730|consen 578 NRPD-----MIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAK------KMPFSEDVDLEELAQATEGYSG-----AEI 641 (693)
T ss_pred CChh-----hcCHHHcCCcccceeEeecCccHHHHHHHHHHHHh------cCCCCccccHHHHHHHhccCCh-----HHH
Confidence 9998 89999999 998 599999999999999987766 3456665 57788888888754 678
Q ss_pred HHHHHHHhhHHHH
Q 003088 507 IDLVDEAGSRAHI 519 (849)
Q Consensus 507 i~ll~~a~~~~~~ 519 (849)
..++.+|+..+..
T Consensus 642 ~~lCq~A~~~a~~ 654 (693)
T KOG0730|consen 642 VAVCQEAALLALR 654 (693)
T ss_pred HHHHHHHHHHHHH
Confidence 8899998876653
No 23
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=1.7e-20 Score=196.78 Aligned_cols=203 Identities=21% Similarity=0.263 Sum_probs=153.4
Q ss_pred cCCCCccccHHHHHHHHHHH------------hcCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeeh
Q 003088 287 ELIDPVIGRETEIQRIIQIL------------CRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM 354 (849)
Q Consensus 287 ~~l~~iiG~~~~i~~l~~~l------------~~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~ 354 (849)
-+.++|.|.++.++.|.+.+ -++.=..+|++||||||||.||+++|-++ +..+|.+.-
T Consensus 209 ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc----------~tTFFNVSs 278 (491)
T KOG0738|consen 209 IKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATEC----------GTTFFNVSS 278 (491)
T ss_pred cChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhh----------cCeEEEech
Confidence 36789999999988888854 12233689999999999999999999998 677777665
Q ss_pred hhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhc-------CCC-eEE
Q 003088 355 GLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG-------RGE-LQC 426 (849)
Q Consensus 355 ~~~~~~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le-------~~~-i~v 426 (849)
+.+. .+|||+.|+.++-+|+.++...|+++||||||.|+..++... ..+.+..+.+-|+-.++ +.+ +.|
T Consensus 279 stlt--SKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~-EHEaSRRvKsELLvQmDG~~~t~e~~k~VmV 355 (491)
T KOG0738|consen 279 STLT--SKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSS-EHEASRRVKSELLVQMDGVQGTLENSKVVMV 355 (491)
T ss_pred hhhh--hhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCcc-chhHHHHHHHHHHHHhhccccccccceeEEE
Confidence 5555 799999999999999999999999999999999998765431 12344455555554443 223 555
Q ss_pred EEccChHHHHHHhhccHHHHhccc-cEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhcccccCcchhh
Q 003088 427 IASTTQDEHRTQFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDK 505 (849)
Q Consensus 427 I~at~~~~~~~~~~~d~al~~Rf~-~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~~~r~~p~~ 505 (849)
+++||.+ +++|.+|+|||. +|+||.|+.+.|..+|+..+...+ .-++-.++.++..+++|-. ++
T Consensus 356 LAATN~P-----WdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~~-----~~~~~~~~~lae~~eGySG-----aD 420 (491)
T KOG0738|consen 356 LAATNFP-----WDIDEALRRRLEKRIYIPLPDAEARSALIKILLRSVE-----LDDPVNLEDLAERSEGYSG-----AD 420 (491)
T ss_pred EeccCCC-----cchHHHHHHHHhhheeeeCCCHHHHHHHHHHhhcccc-----CCCCccHHHHHHHhcCCCh-----HH
Confidence 6666665 599999999998 699999999999999987665221 1223346778888888765 56
Q ss_pred HHHHHHHHhhHH
Q 003088 506 AIDLVDEAGSRA 517 (849)
Q Consensus 506 ai~ll~~a~~~~ 517 (849)
...++.+|....
T Consensus 421 I~nvCreAsm~~ 432 (491)
T KOG0738|consen 421 ITNVCREASMMA 432 (491)
T ss_pred HHHHHHHHHHHH
Confidence 667777775544
No 24
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.86 E-value=7.1e-21 Score=210.95 Aligned_cols=179 Identities=18% Similarity=0.291 Sum_probs=147.9
Q ss_pred ccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeecccccccccccccc
Q 003088 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLI 708 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~ 708 (849)
..++|++.++.++...+.+.... ..+||++|++||||..+|++||+...+.+.|||.+||..+......+.||
T Consensus 141 ~~liG~S~am~~l~~~i~kvA~s-------~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ESELF 213 (464)
T COG2204 141 GELVGESPAMQQLRRLIAKVAPS-------DASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLESELF 213 (464)
T ss_pred CCceecCHHHHHHHHHHHHHhCC-------CCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHHHHHhh
Confidence 56999999999999999875322 23499999999999999999999998889999999999999998889999
Q ss_pred CCCCC-ccccccCcchhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCchhhh
Q 003088 709 GSPPG-YVGYEEGGLLTEAIRRRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIA 787 (849)
Q Consensus 709 g~~~g-~vg~~~~~~l~~~i~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~ 787 (849)
|+..| +.|... .-.+.+..+.+|+||||||..|+.++|..||++|+++.+..-+|++...-|++||++||.+.....
T Consensus 214 GhekGAFTGA~~--~r~G~fE~A~GGTLfLDEI~~mpl~~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT~~dL~~~v 291 (464)
T COG2204 214 GHEKGAFTGAIT--RRIGRFEQANGGTLFLDEIGEMPLELQVKLLRVLQEREFERVGGNKPIKVDVRIIAATNRDLEEEV 291 (464)
T ss_pred cccccCcCCccc--ccCcceeEcCCceEEeeccccCCHHHHHHHHHHHHcCeeEecCCCcccceeeEEEeecCcCHHHHH
Confidence 97554 233322 123455667899999999999999999999999999999998887766779999999999988877
Q ss_pred cccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccE-EEcCCCCHHHHccc
Q 003088 788 KGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEV-VVFRSLEKAQVCQL 846 (849)
Q Consensus 788 ~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~-i~f~pl~~~~~~~I 846 (849)
+.+. |+++|++|++.+ |..|||. +..++|
T Consensus 292 ~~G~-----------------------------FReDLyyRLnV~~i~iPpLR-ER~EDI 321 (464)
T COG2204 292 AAGR-----------------------------FREDLYYRLNVVPLRLPPLR-ERKEDI 321 (464)
T ss_pred HcCC-----------------------------cHHHHHhhhccceecCCccc-ccchhH
Confidence 7765 999999999864 4455554 444444
No 25
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.85 E-value=5e-21 Score=191.48 Aligned_cols=190 Identities=21% Similarity=0.301 Sum_probs=130.2
Q ss_pred hhhhHHHHhhcCCCCccccHHHHHHHHHHHhc-----CCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEE
Q 003088 277 CVDLTARASEELIDPVIGRETEIQRIIQILCR-----RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMS 351 (849)
Q Consensus 277 ~~~l~~~~~~~~l~~iiG~~~~i~~l~~~l~~-----~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~ 351 (849)
..++.+.+||..|+++|||++.+..+.-++.. ....|+|||||||+||||+|+.||+++ +..+..
T Consensus 11 ~~~l~~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~----------~~~~~~ 80 (233)
T PF05496_consen 11 EAPLAERLRPKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANEL----------GVNFKI 80 (233)
T ss_dssp -S-HHHHTS-SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHC----------T--EEE
T ss_pred chhhHHhcCCCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhcc----------CCCeEe
Confidence 34677899999999999999999886655432 234689999999999999999999999 555554
Q ss_pred eehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCCC--------
Q 003088 352 LDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGE-------- 423 (849)
Q Consensus 352 l~~~~~~~~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~~-------- 423 (849)
.+... +. ..++ +..++..++ .+.||||||||+| ....++.|.+++|++.
T Consensus 81 ~sg~~-i~---k~~d----l~~il~~l~--~~~ILFIDEIHRl-------------nk~~qe~LlpamEd~~idiiiG~g 137 (233)
T PF05496_consen 81 TSGPA-IE---KAGD----LAAILTNLK--EGDILFIDEIHRL-------------NKAQQEILLPAMEDGKIDIIIGKG 137 (233)
T ss_dssp EECCC------SCHH----HHHHHHT----TT-EEEECTCCC---------------HHHHHHHHHHHHCSEEEEEBSSS
T ss_pred ccchh-hh---hHHH----HHHHHHhcC--CCcEEEEechhhc-------------cHHHHHHHHHHhccCeEEEEeccc
Confidence 43221 11 1223 333444443 3569999999999 5677899999998654
Q ss_pred ------------eEEEEccChHHHHHHhhccHHHHhcccc-EEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHH
Q 003088 424 ------------LQCIASTTQDEHRTQFEKDKALARRFQP-VLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAV 490 (849)
Q Consensus 424 ------------i~vI~at~~~~~~~~~~~d~al~~Rf~~-i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a 490 (849)
+.+|||||... .+.++|++||.. ..+..++.+|..+|+..-.. ..++.+++++...++
T Consensus 138 ~~ar~~~~~l~~FTligATTr~g-----~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~----~l~i~i~~~~~~~Ia 208 (233)
T PF05496_consen 138 PNARSIRINLPPFTLIGATTRAG-----LLSSPLRDRFGIVLRLEFYSEEELAKIVKRSAR----ILNIEIDEDAAEEIA 208 (233)
T ss_dssp SS-BEEEEE----EEEEEESSGC-----CTSHCCCTTSSEEEE----THHHHHHHHHHCCH----CTT-EE-HHHHHHHH
T ss_pred cccceeeccCCCceEeeeecccc-----ccchhHHhhcceecchhcCCHHHHHHHHHHHHH----HhCCCcCHHHHHHHH
Confidence 46799999886 788999999995 57999999999999976555 678999999999988
Q ss_pred HhhhcccccCcchhhHHHHHHHHh
Q 003088 491 HLSARYISDRYLPDKAIDLVDEAG 514 (849)
Q Consensus 491 ~ls~~~~~~r~~p~~ai~ll~~a~ 514 (849)
..+.+ .|.-|..++..+-
T Consensus 209 ~rsrG------tPRiAnrll~rvr 226 (233)
T PF05496_consen 209 RRSRG------TPRIANRLLRRVR 226 (233)
T ss_dssp HCTTT------SHHHHHHHHHHHC
T ss_pred HhcCC------ChHHHHHHHHHHH
Confidence 87765 5777788877664
No 26
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=1.5e-19 Score=198.80 Aligned_cols=180 Identities=22% Similarity=0.317 Sum_probs=147.7
Q ss_pred CCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEE
Q 003088 309 RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFI 388 (849)
Q Consensus 309 ~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~~~~~~g~~e~~l~~l~~~~~~~~~~ILfI 388 (849)
..+..+||+||||||||.+|+++|++. +..++++.-..++ .+|.|+.|..++.+|+.++...|||+|+
T Consensus 543 ~~PsGvLL~GPPGCGKTLlAKAVANEa----------g~NFisVKGPELl--NkYVGESErAVR~vFqRAR~saPCVIFF 610 (802)
T KOG0733|consen 543 DAPSGVLLCGPPGCGKTLLAKAVANEA----------GANFISVKGPELL--NKYVGESERAVRQVFQRARASAPCVIFF 610 (802)
T ss_pred CCCCceEEeCCCCccHHHHHHHHhhhc----------cCceEeecCHHHH--HHHhhhHHHHHHHHHHHhhcCCCeEEEe
Confidence 456789999999999999999999988 7888998877777 6899999999999999999999999999
Q ss_pred cCcchhhhCCCCCCCCCCccHHHHHHHhhhhc----CCCeEEEEccChHHHHHHhhccHHHHh--ccc-cEEecCCCHHH
Q 003088 389 DEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG----RGELQCIASTTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQED 461 (849)
Q Consensus 389 DEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le----~~~i~vI~at~~~~~~~~~~~d~al~~--Rf~-~i~~~~ps~~e 461 (849)
||+|.|++.++.+. ...+..+.|.|+.-|+ +.++.||+|||.++ -+||+++| ||+ .++++.|+.+|
T Consensus 611 DEiDaL~p~R~~~~--s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPD-----iIDpAiLRPGRlDk~LyV~lPn~~e 683 (802)
T KOG0733|consen 611 DEIDALVPRRSDEG--SSVSSRVVNQLLTELDGLEERRGVYVIAATNRPD-----IIDPAILRPGRLDKLLYVGLPNAEE 683 (802)
T ss_pred cchhhcCcccCCCC--chhHHHHHHHHHHHhcccccccceEEEeecCCCc-----ccchhhcCCCccCceeeecCCCHHH
Confidence 99999999776543 2456778888887775 56799999999998 89999999 998 59999999999
Q ss_pred HHHHHHHHHHHHHhhcCCccCHH-HHHHHHHhhh--cccccCcchhhHHHHHHHHhhH
Q 003088 462 AVRILLGLREKYEAHHNCKFTLE-AINAAVHLSA--RYISDRYLPDKAIDLVDEAGSR 516 (849)
Q Consensus 462 ~~~iL~~~~~~~~~~~~~~i~~~-~l~~~a~ls~--~~~~~r~~p~~ai~ll~~a~~~ 516 (849)
|..||+.+.+ .++..++++ .++.++.... +|. ..+.-.|+.+|.-.
T Consensus 684 R~~ILK~~tk----n~k~pl~~dVdl~eia~~~~c~gft-----GADLaaLvreAsi~ 732 (802)
T KOG0733|consen 684 RVAILKTITK----NTKPPLSSDVDLDEIARNTKCEGFT-----GADLAALVREASIL 732 (802)
T ss_pred HHHHHHHHhc----cCCCCCCcccCHHHHhhcccccCCc-----hhhHHHHHHHHHHH
Confidence 9999998877 345555544 3566666544 544 35666677776543
No 27
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=1e-19 Score=204.93 Aligned_cols=205 Identities=22% Similarity=0.299 Sum_probs=158.4
Q ss_pred cCCCCccccHHHHHHHHHHHhc------------CCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeeh
Q 003088 287 ELIDPVIGRETEIQRIIQILCR------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM 354 (849)
Q Consensus 287 ~~l~~iiG~~~~i~~l~~~l~~------------~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~ 354 (849)
...+||-|-++....+.+.+.- +++..||||||||||||-+|+++|-++ ...++++.-
T Consensus 669 V~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEc----------sL~FlSVKG 738 (953)
T KOG0736|consen 669 VSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATEC----------SLNFLSVKG 738 (953)
T ss_pred cchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhc----------eeeEEeecC
Confidence 3678999999999888886522 346789999999999999999999998 778888887
Q ss_pred hhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHH-HHHHHhhhhc------CCCeEEE
Q 003088 355 GLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLD-ISNLLKPSLG------RGELQCI 427 (849)
Q Consensus 355 ~~~~~~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~-~~~~L~~~le------~~~i~vI 427 (849)
..++ .+|.|+.|+.++++|+.++++.|||||+||+|.+.|.++...+ +++-+| +...|+..|+ ...+.||
T Consensus 739 PELL--NMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGD-SGGVMDRVVSQLLAELDgls~~~s~~VFVi 815 (953)
T KOG0736|consen 739 PELL--NMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGD-SGGVMDRVVSQLLAELDGLSDSSSQDVFVI 815 (953)
T ss_pred HHHH--HHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCC-ccccHHHHHHHHHHHhhcccCCCCCceEEE
Confidence 7777 6789999999999999999999999999999999997665322 234443 4455544443 3469999
Q ss_pred EccChHHHHHHhhccHHHHh--cccc-EEecCC-CHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhcccccCcch
Q 003088 428 ASTTQDEHRTQFEKDKALAR--RFQP-VLISEP-SQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLP 503 (849)
Q Consensus 428 ~at~~~~~~~~~~~d~al~~--Rf~~-i~~~~p-s~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~~~r~~p 503 (849)
||||.++ -+||+|.| ||++ +++.++ +.+.+..||+.+.+++....++. +..+++.+.- .+..
T Consensus 816 GATNRPD-----LLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVd-----L~eiAk~cp~----~~TG 881 (953)
T KOG0736|consen 816 GATNRPD-----LLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVD-----LVEIAKKCPP----NMTG 881 (953)
T ss_pred ecCCCcc-----ccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcC-----HHHHHhhCCc----CCch
Confidence 9999998 89999999 9995 888877 78889999999988764444333 3445554443 3344
Q ss_pred hhHHHHHHHHhhHHH
Q 003088 504 DKAIDLVDEAGSRAH 518 (849)
Q Consensus 504 ~~ai~ll~~a~~~~~ 518 (849)
.+...++-+|.-.+.
T Consensus 882 ADlYsLCSdA~l~Ai 896 (953)
T KOG0736|consen 882 ADLYSLCSDAMLAAI 896 (953)
T ss_pred hHHHHHHHHHHHHHH
Confidence 677777777755543
No 28
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.84 E-value=1.3e-20 Score=185.69 Aligned_cols=163 Identities=23% Similarity=0.340 Sum_probs=128.1
Q ss_pred ccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccccccCC
Q 003088 631 VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGS 710 (849)
Q Consensus 631 i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~ 710 (849)
|+|.+..++.+.+.++..... ..+|||+|++||||+.+|++||+...+.+.||+.+||+.+........|||.
T Consensus 1 liG~s~~m~~~~~~~~~~a~~-------~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~ 73 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASS-------DLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGH 73 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTS-------TS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEB
T ss_pred CEeCCHHHHHHHHHHHHHhCC-------CCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhcc
Confidence 589999999999988875321 1349999999999999999999988888899999999999887777889997
Q ss_pred CCCc-cccccCcchhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCchhhhcc
Q 003088 711 PPGY-VGYEEGGLLTEAIRRRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKG 789 (849)
Q Consensus 711 ~~g~-vg~~~~~~l~~~i~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~~~ 789 (849)
..+. .|.. ..-.+.+.++.+|+||||||+.|++.+|..|+++|+++.+...++.+....+++||++|+.+++.+...
T Consensus 74 ~~~~~~~~~--~~~~G~l~~A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~~l~~~v~~ 151 (168)
T PF00158_consen 74 EKGAFTGAR--SDKKGLLEQANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSKDLEELVEQ 151 (168)
T ss_dssp CSSSSTTTS--SEBEHHHHHTTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS-HHHHHHT
T ss_pred ccccccccc--cccCCceeeccceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCcCHHHHHHc
Confidence 5543 2222 123478889999999999999999999999999999999988776665667999999999998887766
Q ss_pred cCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhcccc
Q 003088 790 RHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDE 831 (849)
Q Consensus 790 ~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~ 831 (849)
+. |+++|++|+..
T Consensus 152 g~-----------------------------fr~dLy~rL~~ 164 (168)
T PF00158_consen 152 GR-----------------------------FREDLYYRLNV 164 (168)
T ss_dssp TS-----------------------------S-HHHHHHHTT
T ss_pred CC-----------------------------ChHHHHHHhce
Confidence 55 99999999964
No 29
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.84 E-value=2.1e-20 Score=191.52 Aligned_cols=203 Identities=17% Similarity=0.204 Sum_probs=162.4
Q ss_pred hhhhhHHHHhhcCCCCccccHHHHHHHHHHHhcCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehh
Q 003088 276 FCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMG 355 (849)
Q Consensus 276 ~~~~l~~~~~~~~l~~iiG~~~~i~~l~~~l~~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~ 355 (849)
.-..|+++|||.+|++++|++.++..|...+.++..+|.|||||||||||+.|+++|++++.. .+..+++.+++.+
T Consensus 22 ~~~swteKYrPkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~----~~~~~rvl~lnaS 97 (346)
T KOG0989|consen 22 KHRSWTEKYRPKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCE----QLFPCRVLELNAS 97 (346)
T ss_pred CccchHHHhCCCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCc----cccccchhhhccc
Confidence 345699999999999999999999999999999999999999999999999999999999762 2334556655544
Q ss_pred hhhccccccchHHHHHHHHHHHHHh---------cC-CeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcC--CC
Q 003088 356 LLMAGAKERGELEARVTTLISEIQK---------SG-DVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--GE 423 (849)
Q Consensus 356 ~~~~~~~~~g~~e~~l~~l~~~~~~---------~~-~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~--~~ 423 (849)
....-. -..++++.. ..... .. ..|++|||+|.| +.++++.|+..+|+ ..
T Consensus 98 derGis----vvr~Kik~f-akl~~~~~~~~~~~~~~fKiiIlDEcdsm-------------tsdaq~aLrr~mE~~s~~ 159 (346)
T KOG0989|consen 98 DERGIS----VVREKIKNF-AKLTVLLKRSDGYPCPPFKIIILDECDSM-------------TSDAQAALRRTMEDFSRT 159 (346)
T ss_pred cccccc----chhhhhcCH-HHHhhccccccCCCCCcceEEEEechhhh-------------hHHHHHHHHHHHhccccc
Confidence 322111 111222211 11111 11 269999999999 67899999999985 56
Q ss_pred eEEEEccChHHHHHHhhccHHHHhccccEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhcccccCcch
Q 003088 424 LQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLP 503 (849)
Q Consensus 424 i~vI~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~~~r~~p 503 (849)
.+||..||+.+ .+.+.+.+||+++.|++...++.+..|+.++. .+++.++++++..++..+++.+.
T Consensus 160 trFiLIcnyls-----rii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~----~E~v~~d~~al~~I~~~S~GdLR----- 225 (346)
T KOG0989|consen 160 TRFILICNYLS-----RIIRPLVSRCQKFRFKKLKDEDIVDRLEKIAS----KEGVDIDDDALKLIAKISDGDLR----- 225 (346)
T ss_pred eEEEEEcCChh-----hCChHHHhhHHHhcCCCcchHHHHHHHHHHHH----HhCCCCCHHHHHHHHHHcCCcHH-----
Confidence 88999999987 88899999999999999999999999999988 88999999999999999999774
Q ss_pred hhHHHHHHHHhh
Q 003088 504 DKAIDLVDEAGS 515 (849)
Q Consensus 504 ~~ai~ll~~a~~ 515 (849)
+|+..++.+..
T Consensus 226 -~Ait~Lqsls~ 236 (346)
T KOG0989|consen 226 -RAITTLQSLSL 236 (346)
T ss_pred -HHHHHHHHhhc
Confidence 67777777654
No 30
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.83 E-value=3.6e-20 Score=192.26 Aligned_cols=189 Identities=22% Similarity=0.301 Sum_probs=148.4
Q ss_pred hhhhHHHHhhcCCCCccccHHHHHH---HHHHHhcCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEee
Q 003088 277 CVDLTARASEELIDPVIGRETEIQR---IIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD 353 (849)
Q Consensus 277 ~~~l~~~~~~~~l~~iiG~~~~i~~---l~~~l~~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~ 353 (849)
..+|.+++||.+++++|||++.+.. |...+...+.++++|+||||||||+||+.|+...... ..+++++
T Consensus 125 h~PLaermRPktL~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~-------Syrfvel- 196 (554)
T KOG2028|consen 125 HKPLAERMRPKTLDDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKH-------SYRFVEL- 196 (554)
T ss_pred cCChhhhcCcchHHHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCC-------ceEEEEE-
Confidence 3489999999999999999988754 5556677888999999999999999999999876322 2345544
Q ss_pred hhhhhccccccchHHHHHHHHHHHHHh-----cCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCCCeEEEE
Q 003088 354 MGLLMAGAKERGELEARVTTLISEIQK-----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIA 428 (849)
Q Consensus 354 ~~~~~~~~~~~g~~e~~l~~l~~~~~~-----~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~~i~vI~ 428 (849)
++..++.++ ++.+|+.+++ ..+.||||||||++. ...+++|++.+|+|.|.+||
T Consensus 197 -SAt~a~t~d-------vR~ife~aq~~~~l~krkTilFiDEiHRFN-------------ksQQD~fLP~VE~G~I~lIG 255 (554)
T KOG2028|consen 197 -SATNAKTND-------VRDIFEQAQNEKSLTKRKTILFIDEIHRFN-------------KSQQDTFLPHVENGDITLIG 255 (554)
T ss_pred -eccccchHH-------HHHHHHHHHHHHhhhcceeEEEeHHhhhhh-------------hhhhhcccceeccCceEEEe
Confidence 444444433 5666666654 457899999999992 33478999999999999999
Q ss_pred ccChHHHHHHhhccHHHHhccccEEecCCCHHHHHHHHHHHHHHHHhh---------cCCccCHHHHHHHHHhhhccc
Q 003088 429 STTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAH---------HNCKFTLEAINAAVHLSARYI 497 (849)
Q Consensus 429 at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL~~~~~~~~~~---------~~~~i~~~~l~~~a~ls~~~~ 497 (849)
+||.++ .|.++.+|.+||.++.+++++.+....||.....-+... ..+.+++.++++++.++.+..
T Consensus 256 ATTENP---SFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDa 330 (554)
T KOG2028|consen 256 ATTENP---SFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDA 330 (554)
T ss_pred cccCCC---ccchhHHHHhccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchH
Confidence 999986 788999999999999999999999999998854422211 123467888999999888753
No 31
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.83 E-value=8.4e-20 Score=203.84 Aligned_cols=203 Identities=20% Similarity=0.197 Sum_probs=159.4
Q ss_pred hhhHHHHhhcCCCCccccHHHHHHHHHHHhcCCCCC-CeEeCCCCChHHHHHHHHHHHhhhCCCCcc--cc---------
Q 003088 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEVPVF--LL--------- 345 (849)
Q Consensus 278 ~~l~~~~~~~~l~~iiG~~~~i~~l~~~l~~~~~~n-iLL~GppGtGKT~la~~la~~l~~~~~p~~--~~--------- 345 (849)
..|.++|||.+|+++||++..+..|..++..++..| +||+||+|||||++|+.+|+.+.+...+.. ..
T Consensus 6 ~~L~~KyRP~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~ 85 (484)
T PRK14956 6 EVLSRKYRPQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEIT 85 (484)
T ss_pred chhHHHhCCCCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHH
Confidence 569999999999999999999999999988877666 699999999999999999999976422110 00
Q ss_pred ---CCeEEEeehhhhhccccccchHHHHHHHHHHHHH----hcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhh
Q 003088 346 ---SKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPS 418 (849)
Q Consensus 346 ---~~~~~~l~~~~~~~~~~~~g~~e~~l~~l~~~~~----~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~ 418 (849)
...++++|... ..| .+.++.+.+.+. .++..|+||||+|.| +.+++|.|+..
T Consensus 86 ~g~~~dviEIdaas------~~g--Vd~IReL~e~l~~~p~~g~~KV~IIDEah~L-------------s~~A~NALLKt 144 (484)
T PRK14956 86 KGISSDVLEIDAAS------NRG--IENIRELRDNVKFAPMGGKYKVYIIDEVHML-------------TDQSFNALLKT 144 (484)
T ss_pred ccCCccceeechhh------ccc--HHHHHHHHHHHHhhhhcCCCEEEEEechhhc-------------CHHHHHHHHHH
Confidence 11234443221 111 123444444443 245679999999999 45678999999
Q ss_pred hcC--CCeEEEEccChHHHHHHhhccHHHHhccccEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhcc
Q 003088 419 LGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496 (849)
Q Consensus 419 le~--~~i~vI~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~ 496 (849)
+|. +.+++|++||... .+.+++++||+.+.|..++.++..+.|+.++. ..++.++++++..++..+++.
T Consensus 145 LEEPp~~viFILaTte~~-----kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~----~Egi~~e~eAL~~Ia~~S~Gd 215 (484)
T PRK14956 145 LEEPPAHIVFILATTEFH-----KIPETILSRCQDFIFKKVPLSVLQDYSEKLCK----IENVQYDQEGLFWIAKKGDGS 215 (484)
T ss_pred hhcCCCceEEEeecCChh-----hccHHHHhhhheeeecCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHcCCh
Confidence 997 6799999998865 78899999999999999999999999988877 568999999999999999986
Q ss_pred cccCcchhhHHHHHHHHhhH
Q 003088 497 ISDRYLPDKAIDLVDEAGSR 516 (849)
Q Consensus 497 ~~~r~~p~~ai~ll~~a~~~ 516 (849)
. .+|+.+++.+++.
T Consensus 216 ~------RdAL~lLeq~i~~ 229 (484)
T PRK14956 216 V------RDMLSFMEQAIVF 229 (484)
T ss_pred H------HHHHHHHHHHHHh
Confidence 5 4889999987653
No 32
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=4e-19 Score=180.17 Aligned_cols=188 Identities=21% Similarity=0.281 Sum_probs=150.5
Q ss_pred CCCCccccHHHHHHHHHHH------------hcCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehh
Q 003088 288 LIDPVIGRETEIQRIIQIL------------CRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMG 355 (849)
Q Consensus 288 ~l~~iiG~~~~i~~l~~~l------------~~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~ 355 (849)
+.+++-|.+...+.|.+.+ .+..-+.+||||||||||+.||+++|-+. +..++++.-+
T Consensus 131 kWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA----------nSTFFSvSSS 200 (439)
T KOG0739|consen 131 KWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA----------NSTFFSVSSS 200 (439)
T ss_pred chhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc----------CCceEEeehH
Confidence 5789999999999888854 22233679999999999999999999988 6788898888
Q ss_pred hhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhc-----CCCeEEEEcc
Q 003088 356 LLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG-----RGELQCIAST 430 (849)
Q Consensus 356 ~~~~~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le-----~~~i~vI~at 430 (849)
+++ .+|-|+.|..++++|+.++++.|+|+||||||.++++++.+.+ +....+..-|+-.+. +..+.|+|+|
T Consensus 201 DLv--SKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEs--easRRIKTEfLVQMqGVG~d~~gvLVLgAT 276 (439)
T KOG0739|consen 201 DLV--SKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENES--EASRRIKTEFLVQMQGVGNDNDGVLVLGAT 276 (439)
T ss_pred HHH--HHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCch--HHHHHHHHHHHHhhhccccCCCceEEEecC
Confidence 887 6899999999999999999999999999999999987655322 223333333332222 4568999999
Q ss_pred ChHHHHHHhhccHHHHhccc-cEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhcccc
Q 003088 431 TQDEHRTQFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498 (849)
Q Consensus 431 ~~~~~~~~~~~d~al~~Rf~-~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~~ 498 (849)
|.+ +.+|.+++|||. +|+||.|....|..|++-... .....+++..+..++..+++|-.
T Consensus 277 NiP-----w~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG----~tp~~LT~~d~~eL~~kTeGySG 336 (439)
T KOG0739|consen 277 NIP-----WVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLG----DTPHVLTEQDFKELARKTEGYSG 336 (439)
T ss_pred CCc-----hhHHHHHHHHhhcceeccCCcHHHhhhhheeccC----CCccccchhhHHHHHhhcCCCCc
Confidence 987 489999999998 699999999999998854333 33457788889999999999865
No 33
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.82 E-value=1.7e-19 Score=207.66 Aligned_cols=202 Identities=17% Similarity=0.195 Sum_probs=157.8
Q ss_pred hhHHHHhhcCCCCccccHHHHHHHHHHHhcCCCCCC-eEeCCCCChHHHHHHHHHHHhhhCCCCcc--c-----------
Q 003088 279 DLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP-ILLGESGVGKTAIAEGLAIRIVQAEVPVF--L----------- 344 (849)
Q Consensus 279 ~l~~~~~~~~l~~iiG~~~~i~~l~~~l~~~~~~ni-LL~GppGtGKT~la~~la~~l~~~~~p~~--~----------- 344 (849)
.|.+||||++|+++||++..++.|..++..++..|. ||+||+|||||++++.||+.+++...... .
T Consensus 5 vLarKYRPqtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~ 84 (830)
T PRK07003 5 VLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDE 84 (830)
T ss_pred hHHHHhCCCcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhc
Confidence 488999999999999999999999999988777776 89999999999999999999975321110 0
Q ss_pred -cCCeEEEeehhhhhccccccchHHHHHHHHHHHHH----hcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhh
Q 003088 345 -LSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL 419 (849)
Q Consensus 345 -~~~~~~~l~~~~~~~~~~~~g~~e~~l~~l~~~~~----~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~l 419 (849)
....++++|-.+ .++ .+.++.+++.+. .++..|+||||+|.| +...+|.|++.|
T Consensus 85 G~h~DviEIDAas------~rg--VDdIReLIe~a~~~P~~gr~KVIIIDEah~L-------------T~~A~NALLKtL 143 (830)
T PRK07003 85 GRFVDYVEMDAAS------NRG--VDEMAALLERAVYAPVDARFKVYMIDEVHML-------------TNHAFNAMLKTL 143 (830)
T ss_pred CCCceEEEecccc------ccc--HHHHHHHHHHHHhccccCCceEEEEeChhhC-------------CHHHHHHHHHHH
Confidence 011344443321 111 122444444443 244579999999999 446688888889
Q ss_pred cC--CCeEEEEccChHHHHHHhhccHHHHhccccEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhccc
Q 003088 420 GR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497 (849)
Q Consensus 420 e~--~~i~vI~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~ 497 (849)
|. ..+.||++||... .+.+.+++||+.+.|..++.++..+.|+.++. .+++.++++++..+++.+++.+
T Consensus 144 EEPP~~v~FILaTtd~~-----KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~----~EgI~id~eAL~lIA~~A~Gsm 214 (830)
T PRK07003 144 EEPPPHVKFILATTDPQ-----KIPVTVLSRCLQFNLKQMPAGHIVSHLERILG----EERIAFEPQALRLLARAAQGSM 214 (830)
T ss_pred HhcCCCeEEEEEECChh-----hccchhhhheEEEecCCcCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHcCCCH
Confidence 86 4789999998876 67899999999999999999999999988877 6789999999999999999865
Q ss_pred ccCcchhhHHHHHHHHhhH
Q 003088 498 SDRYLPDKAIDLVDEAGSR 516 (849)
Q Consensus 498 ~~r~~p~~ai~ll~~a~~~ 516 (849)
.+++++++.++..
T Consensus 215 ------RdALsLLdQAia~ 227 (830)
T PRK07003 215 ------RDALSLTDQAIAY 227 (830)
T ss_pred ------HHHHHHHHHHHHh
Confidence 4788998888754
No 34
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.81 E-value=1.5e-18 Score=197.31 Aligned_cols=204 Identities=21% Similarity=0.265 Sum_probs=153.9
Q ss_pred cCCCCccccHHHHHHHHHHH----------hcCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhh
Q 003088 287 ELIDPVIGRETEIQRIIQIL----------CRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGL 356 (849)
Q Consensus 287 ~~l~~iiG~~~~i~~l~~~l----------~~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~ 356 (849)
.+++++.|.+..++.+.+.. ..+.+.++||+||||||||.+|+++|.++ +.+++.++++.
T Consensus 225 ~~~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~----------~~~~~~l~~~~ 294 (489)
T CHL00195 225 EKISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW----------QLPLLRLDVGK 294 (489)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh----------CCCEEEEEhHH
Confidence 35778999887776655421 11345689999999999999999999998 78889999888
Q ss_pred hhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhc--CCCeEEEEccChHH
Q 003088 357 LMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG--RGELQCIASTTQDE 434 (849)
Q Consensus 357 ~~~~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le--~~~i~vI~at~~~~ 434 (849)
+.. ++.|+.+.+++.+|+.++...|+||||||+|.++..... .+.++....+.+.|...+. +..+.+|+|||..+
T Consensus 295 l~~--~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~-~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~ 371 (489)
T CHL00195 295 LFG--GIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSES-KGDSGTTNRVLATFITWLSEKKSPVFVVATANNID 371 (489)
T ss_pred hcc--cccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccC-CCCchHHHHHHHHHHHHHhcCCCceEEEEecCChh
Confidence 774 568999999999999999989999999999999864322 1111233445556666554 45688999999887
Q ss_pred HHHHhhccHHHHh--ccc-cEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhcccccCcchhhHHHHHH
Q 003088 435 HRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVD 511 (849)
Q Consensus 435 ~~~~~~~d~al~~--Rf~-~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~~~r~~p~~ai~ll~ 511 (849)
.+|+++.| ||+ .++|+.|+.++|.+||+.+..++.. ....+..+..++..+.+|.. .+...++.
T Consensus 372 -----~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~---~~~~~~dl~~La~~T~GfSG-----AdI~~lv~ 438 (489)
T CHL00195 372 -----LLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRP---KSWKKYDIKKLSKLSNKFSG-----AEIEQSII 438 (489)
T ss_pred -----hCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCC---CcccccCHHHHHhhcCCCCH-----HHHHHHHH
Confidence 89999988 998 6999999999999999988775321 12234557788888888754 55556666
Q ss_pred HHhhH
Q 003088 512 EAGSR 516 (849)
Q Consensus 512 ~a~~~ 516 (849)
+|+..
T Consensus 439 eA~~~ 443 (489)
T CHL00195 439 EAMYI 443 (489)
T ss_pred HHHHH
Confidence 66543
No 35
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.81 E-value=3.4e-19 Score=203.06 Aligned_cols=201 Identities=17% Similarity=0.191 Sum_probs=157.2
Q ss_pred hhHHHHhhcCCCCccccHHHHHHHHHHHhcCCCCCC-eEeCCCCChHHHHHHHHHHHhhhCCC-----C--cccc-----
Q 003088 279 DLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP-ILLGESGVGKTAIAEGLAIRIVQAEV-----P--VFLL----- 345 (849)
Q Consensus 279 ~l~~~~~~~~l~~iiG~~~~i~~l~~~l~~~~~~ni-LL~GppGtGKT~la~~la~~l~~~~~-----p--~~~~----- 345 (849)
.|.++|||.+|+++||++..++.|.+++...+..|. ||+||+|||||++|+.||+.+.+... . ....
T Consensus 5 vLarKYRPqtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC 84 (700)
T PRK12323 5 VLARKWRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRAC 84 (700)
T ss_pred hHHHHhCCCcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHH
Confidence 588999999999999999999999999988888886 99999999999999999999976311 0 0000
Q ss_pred -------CCeEEEeehhhhhccccccchHHHHHHHHHHHHH----hcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHH
Q 003088 346 -------SKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNL 414 (849)
Q Consensus 346 -------~~~~~~l~~~~~~~~~~~~g~~e~~l~~l~~~~~----~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~ 414 (849)
...++++|..+ ....++ ++++++.+. .++..|+||||+|.| +..++|.
T Consensus 85 ~~I~aG~hpDviEIdAas----~~gVDd----IReLie~~~~~P~~gr~KViIIDEah~L-------------s~~AaNA 143 (700)
T PRK12323 85 TEIDAGRFVDYIEMDAAS----NRGVDE----MAQLLDKAVYAPTAGRFKVYMIDEVHML-------------TNHAFNA 143 (700)
T ss_pred HHHHcCCCCcceEecccc----cCCHHH----HHHHHHHHHhchhcCCceEEEEEChHhc-------------CHHHHHH
Confidence 11344444321 111223 444444433 345679999999999 4567889
Q ss_pred HhhhhcC--CCeEEEEccChHHHHHHhhccHHHHhccccEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHh
Q 003088 415 LKPSLGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHL 492 (849)
Q Consensus 415 L~~~le~--~~i~vI~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~l 492 (849)
|++.||. +++.||++||... .+.+.++|||+.+.|..++.++..+.|+.++. ..++.++++++..++..
T Consensus 144 LLKTLEEPP~~v~FILaTtep~-----kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~----~Egi~~d~eAL~~IA~~ 214 (700)
T PRK12323 144 MLKTLEEPPEHVKFILATTDPQ-----KIPVTVLSRCLQFNLKQMPPGHIVSHLDAILG----EEGIAHEVNALRLLAQA 214 (700)
T ss_pred HHHhhccCCCCceEEEEeCChH-----hhhhHHHHHHHhcccCCCChHHHHHHHHHHHH----HcCCCCCHHHHHHHHHH
Confidence 9999986 6789999999876 77899999999999999999999999988876 56889999999999999
Q ss_pred hhcccccCcchhhHHHHHHHHhh
Q 003088 493 SARYISDRYLPDKAIDLVDEAGS 515 (849)
Q Consensus 493 s~~~~~~r~~p~~ai~ll~~a~~ 515 (849)
+++-. .+++++++.++.
T Consensus 215 A~Gs~------RdALsLLdQaia 231 (700)
T PRK12323 215 AQGSM------RDALSLTDQAIA 231 (700)
T ss_pred cCCCH------HHHHHHHHHHHH
Confidence 88754 478888887664
No 36
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.81 E-value=5.2e-20 Score=200.02 Aligned_cols=174 Identities=20% Similarity=0.297 Sum_probs=145.8
Q ss_pred ccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeecccccccccccccc
Q 003088 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLI 708 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~ 708 (849)
..|||++.++.++.+.+..... ...+||+.|++||||..+|++||+.+.+.+.||+.+||+.+.+....+.||
T Consensus 223 ~~iIG~S~am~~ll~~i~~VA~-------Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesLlESELF 295 (550)
T COG3604 223 GGIIGRSPAMRQLLKEIEVVAK-------SDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESLLESELF 295 (550)
T ss_pred ccceecCHHHHHHHHHHHHHhc-------CCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchHHHHHHHh
Confidence 5699999999999999986422 123499999999999999999999999999999999999999999999999
Q ss_pred CCCCCccccccCcchhHHHHh-------CCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCC
Q 003088 709 GSPPGYVGYEEGGLLTEAIRR-------RPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNV 781 (849)
Q Consensus 709 g~~~g~vg~~~~~~l~~~i~~-------~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~ 781 (849)
|.- .|.|++++.. +.+|+||||||..++..+|..||.+|++|.+..-+|...-.-+++||++||.
T Consensus 296 GHe--------KGAFTGA~~~r~GrFElAdGGTLFLDEIGelPL~lQaKLLRvLQegEieRvG~~r~ikVDVRiIAATNR 367 (550)
T COG3604 296 GHE--------KGAFTGAINTRRGRFELADGGTLFLDEIGELPLALQAKLLRVLQEGEIERVGGDRTIKVDVRVIAATNR 367 (550)
T ss_pred ccc--------ccccccchhccCcceeecCCCeEechhhccCCHHHHHHHHHHHhhcceeecCCCceeEEEEEEEeccch
Confidence 963 3456666554 4578999999999999999999999999999998877666669999999999
Q ss_pred CchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHHHccc
Q 003088 782 GSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQL 846 (849)
Q Consensus 782 ~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~I 846 (849)
+.+.++..+. |+.+||+|++.+=.+.|+-++.-.+|
T Consensus 368 DL~~~V~~G~-----------------------------FRaDLYyRLsV~Pl~lPPLRER~~DI 403 (550)
T COG3604 368 DLEEMVRDGE-----------------------------FRADLYYRLSVFPLELPPLRERPEDI 403 (550)
T ss_pred hHHHHHHcCc-----------------------------chhhhhhcccccccCCCCcccCCccH
Confidence 9888877765 99999999986544555554544444
No 37
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.81 E-value=1.9e-18 Score=196.58 Aligned_cols=300 Identities=16% Similarity=0.214 Sum_probs=179.6
Q ss_pred CeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCCCeEEEEccChHHHHHHhhccHHHHhccccEEecCCCHHHH
Q 003088 383 DVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDA 462 (849)
Q Consensus 383 ~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~~i~vI~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~~e~ 462 (849)
++|+++.|+|.+++.. .-...+.|+....-..++.+||.+.+ ..+.+.|.+-+..+.++.|+.+|+
T Consensus 82 ~~~~vl~d~h~~~~~~-------~~~r~l~~l~~~~~~~~~~~i~~~~~-------~~~p~el~~~~~~~~~~lP~~~ei 147 (489)
T CHL00195 82 PALFLLKDFNRFLNDI-------SISRKLRNLSRILKTQPKTIIIIASE-------LNIPKELKDLITVLEFPLPTESEI 147 (489)
T ss_pred CcEEEEecchhhhcch-------HHHHHHHHHHHHHHhCCCEEEEEcCC-------CCCCHHHHhceeEEeecCcCHHHH
Confidence 6899999999997321 01222233322222234444444432 256778888888899999999999
Q ss_pred HHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhcccccCcchhhHHHHHHHHhhHHHHhhhhchhhhhhhhcCCCCchHHH
Q 003088 463 VRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQ 542 (849)
Q Consensus 463 ~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~~~r~~p~~ai~ll~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 542 (849)
.++++.+.. ..++.++++.++.+++.+.+... ..+..++..+... ......+ ..+.++.
T Consensus 148 ~~~l~~~~~----~~~~~~~~~~~~~l~~~~~gls~-----~~~~~~~~~~~~~----~~~~~~~--------~~~~i~~ 206 (489)
T CHL00195 148 KKELTRLIK----SLNIKIDSELLENLTRACQGLSL-----ERIRRVLSKIIAT----YKTIDEN--------SIPLILE 206 (489)
T ss_pred HHHHHHHHH----hcCCCCCHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHH----cCCCChh--------hHHHHHH
Confidence 999977765 44678899999998888877543 2333333322111 0000000 0000011
Q ss_pred HHHHHHHhHHHHHhcccccchhhhccCCcchhHHhccCCCCCCCCCCCccCHhHHHHHHHhHhCCCcccCCHHHHHHHHH
Q 003088 543 EIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLVG 622 (849)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~ 622 (849)
+.+++..+. . +++ ......+.
T Consensus 207 ~k~q~~~~~------~-----------------------------------------~le----~~~~~~~~-------- 227 (489)
T CHL00195 207 EKKQIISQT------E-----------------------------------------ILE----FYSVNEKI-------- 227 (489)
T ss_pred HHHHHHhhh------c-----------------------------------------ccc----ccCCCCCH--------
Confidence 111110000 0 000 00001111
Q ss_pred HHHHHhccccccHHHHHHHHHHH-----HHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccc
Q 003088 623 LEEQLKKRVIGQDEAVAAISRAV-----KRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSE 697 (849)
Q Consensus 623 l~~~l~~~i~Gq~~~i~~l~~~l-----~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~ 697 (849)
+.|.|.+.+++.+.... .....|...|. .+||+||||||||++|+++|..+ +.+|+.++++.
T Consensus 228 ------~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pk----GILL~GPpGTGKTllAkaiA~e~---~~~~~~l~~~~ 294 (489)
T CHL00195 228 ------SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPR----GLLLVGIQGTGKSLTAKAIANDW---QLPLLRLDVGK 294 (489)
T ss_pred ------HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCc----eEEEECCCCCcHHHHHHHHHHHh---CCCEEEEEhHH
Confidence 23455554444443321 12234555432 39999999999999999999986 67899999876
Q ss_pred cccccccccccCCCCCccccccCc--chhHHHHhCCCeEEEEeCccccCH------------HHHHHHHHHhhcCeeecC
Q 003088 698 YMERHTVSKLIGSPPGYVGYEEGG--LLTEAIRRRPFTLLLLDEIEKAHP------------DIFNILLQVFEDGHLTDS 763 (849)
Q Consensus 698 ~~~~~~~~~l~g~~~g~vg~~~~~--~l~~~i~~~~~~vl~lDEid~l~~------------~~~~~Ll~~le~g~~~~~ 763 (849)
+.. +|+|..+.. .+....+...+|||||||||++.. .+++.|+..|++.
T Consensus 295 l~~------------~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~----- 357 (489)
T CHL00195 295 LFG------------GIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEK----- 357 (489)
T ss_pred hcc------------cccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcC-----
Confidence 543 366665421 223333455679999999997632 2566777777652
Q ss_pred CCceeecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhh--ccccEEEcCCCCHH
Q 003088 764 HGRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLN--RIDEVVVFRSLEKA 841 (849)
Q Consensus 764 ~g~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~--R~d~~i~f~pl~~~ 841 (849)
...++||+|||.... ++|+|+. |||.++.++.++.+
T Consensus 358 ------~~~V~vIaTTN~~~~------------------------------------Ld~allR~GRFD~~i~v~lP~~~ 395 (489)
T CHL00195 358 ------KSPVFVVATANNIDL------------------------------------LPLEILRKGRFDEIFFLDLPSLE 395 (489)
T ss_pred ------CCceEEEEecCChhh------------------------------------CCHHHhCCCcCCeEEEeCCcCHH
Confidence 236789999996321 7889985 99999999999999
Q ss_pred HHccccC
Q 003088 842 QVCQLPL 848 (849)
Q Consensus 842 ~~~~I~~ 848 (849)
+..+|++
T Consensus 396 eR~~Il~ 402 (489)
T CHL00195 396 EREKIFK 402 (489)
T ss_pred HHHHHHH
Confidence 9888875
No 38
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.80 E-value=8.2e-20 Score=201.43 Aligned_cols=182 Identities=19% Similarity=0.274 Sum_probs=148.3
Q ss_pred hccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccccc
Q 003088 628 KKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKL 707 (849)
Q Consensus 628 ~~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l 707 (849)
++.|+|.+.++..+...+++... ...+||+.|++||||..+|++||+.+-+.+.|||.+||..+.+....|.|
T Consensus 244 f~~Iig~S~~m~~~~~~akr~A~-------tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe~LlESEL 316 (560)
T COG3829 244 FDDIIGESPAMLRVLELAKRIAK-------TDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPETLLESEL 316 (560)
T ss_pred hhhhccCCHHHHHHHHHHHhhcC-------CCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCHHHHHHHH
Confidence 36799999999888887776421 22349999999999999999999999999999999999999999999999
Q ss_pred cCCCCC-ccccccCcchhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCchhh
Q 003088 708 IGSPPG-YVGYEEGGLLTEAIRRRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTI 786 (849)
Q Consensus 708 ~g~~~g-~vg~~~~~~l~~~i~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l 786 (849)
||...| +.|...+| -.+.+..+.+|+||||||..|+...|..||++|+++++..-+|.+....|++||++||..+..+
T Consensus 317 FGye~GAFTGA~~~G-K~GlfE~A~gGTLFLDEIgempl~LQaKLLRVLQEkei~rvG~t~~~~vDVRIIAATN~nL~~~ 395 (560)
T COG3829 317 FGYEKGAFTGASKGG-KPGLFELANGGTLFLDEIGEMPLPLQAKLLRVLQEKEIERVGGTKPIPVDVRIIAATNRNLEKM 395 (560)
T ss_pred hCcCCccccccccCC-CCcceeeccCCeEEehhhccCCHHHHHHHHHHHhhceEEecCCCCceeeEEEEEeccCcCHHHH
Confidence 997654 34443321 1234455778999999999999999999999999999999888877778999999999999887
Q ss_pred hcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHHHccc
Q 003088 787 AKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQL 846 (849)
Q Consensus 787 ~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~I 846 (849)
.+.+. |+.+|+||++.+-.+.|+-++.-++|
T Consensus 396 i~~G~-----------------------------FReDLYYRLNV~~i~iPPLReR~eDI 426 (560)
T COG3829 396 IAEGT-----------------------------FREDLYYRLNVIPITIPPLRERKEDI 426 (560)
T ss_pred HhcCc-----------------------------chhhheeeeceeeecCCCcccCcchH
Confidence 77665 99999999986444444444444444
No 39
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=1.5e-19 Score=185.37 Aligned_cols=219 Identities=26% Similarity=0.362 Sum_probs=161.7
Q ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHH----HhhcCCCC--CCCCCccceeecCCCCchHHHHHHHHHHhcCCCCc
Q 003088 616 ERMLLVGLEEQLKKRVIGQDEAVAAISRAVK----RSRVGLKD--PNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESS 689 (849)
Q Consensus 616 ~~~~~~~l~~~l~~~i~Gq~~~i~~l~~~l~----~~~~g~~~--~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~ 689 (849)
+...+.+++..|.+.++||+.+++.+.-++- +....... -.-...|+|+.||+|||||.+|+.||+.+ +.|
T Consensus 48 ~lPtP~eik~~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~L---nVP 124 (408)
T COG1219 48 ELPTPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKIL---NVP 124 (408)
T ss_pred cCCChHHHHHHhhhheecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHh---CCC
Confidence 3456788999999999999999998766653 22211110 01123479999999999999999999998 889
Q ss_pred eeEeeccccccccccccccCCCCCccccccCcchhHHHHh-------CCCeEEEEeCccccCH--------------HHH
Q 003088 690 MLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRR-------RPFTLLLLDEIEKAHP--------------DIF 748 (849)
Q Consensus 690 ~i~i~~~~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~i~~-------~~~~vl~lDEid~l~~--------------~~~ 748 (849)
|...|+..+.+ .||||++-...+...+.. +..||+||||||+... .+|
T Consensus 125 FaiADATtLTE-----------AGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQ 193 (408)
T COG1219 125 FAIADATTLTE-----------AGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQ 193 (408)
T ss_pred eeeccccchhh-----------ccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHH
Confidence 99999988765 589999887777777654 4468999999999853 399
Q ss_pred HHHHHHhhcCeeec--CCCceee--------cCCeEEEEecCC-Cchhhhcc--cCCccccccccCC----cccHHhHHH
Q 003088 749 NILLQVFEDGHLTD--SHGRRVS--------FKNALIVMTSNV-GSTTIAKG--RHGSIGFLLEDNE----STSYAGMKT 811 (849)
Q Consensus 749 ~~Ll~~le~g~~~~--~~g~~~~--------~~~~~iI~tsn~-~~~~l~~~--~~~~~gf~~~~~~----~~~~~~~~~ 811 (849)
.+||+.||...... .+|++.+ .+|+.||+..-+ |.+.+.+. +...+||..+... ....+.+.+
T Consensus 194 QALLKiiEGTvasVPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~~R~~~~~iGF~a~~~~~~~~~~~~~~l~~ 273 (408)
T COG1219 194 QALLKIIEGTVASVPPQGGRKHPQQEFIQVDTSNILFICGGAFAGLEKIIKKRLGKKGIGFGAEVKSKSKKKEEGELLKQ 273 (408)
T ss_pred HHHHHHHcCceeccCCCCCCCCCccceEEEcccceeEEeccccccHHHHHHHhccCCcccccccccchhhhhhHHHHHHh
Confidence 99999998655443 3566544 455566554433 45554433 3457999976532 122344677
Q ss_pred HHHHHHHhh-CChHHhhccccEEEcCCCCHHHHccccC
Q 003088 812 LVVEELKAY-FRPELLNRIDEVVVFRSLEKAQVCQLPL 848 (849)
Q Consensus 812 ~~~~~l~~~-~~pell~R~d~~i~f~pl~~~~~~~I~~ 848 (849)
...++|.+| +-|||+.|+..+..+.+|+++++.+|+.
T Consensus 274 vepeDLvkFGLIPEfIGRlPvia~L~~Lde~aLv~ILt 311 (408)
T COG1219 274 VEPEDLVKFGLIPEFIGRLPVIATLEELDEDALVQILT 311 (408)
T ss_pred cChHHHHHcCCcHHHhcccceeeehhhcCHHHHHHHHh
Confidence 788888888 8899999999999999999999999873
No 40
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.80 E-value=1.1e-18 Score=197.97 Aligned_cols=194 Identities=26% Similarity=0.351 Sum_probs=153.2
Q ss_pred hhHHHHhhcCCCCccccHHHHHH---HHHHHhcCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehh
Q 003088 279 DLTARASEELIDPVIGRETEIQR---IIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMG 355 (849)
Q Consensus 279 ~l~~~~~~~~l~~iiG~~~~i~~---l~~~l~~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~ 355 (849)
+|.+++||..|+++||+++.+.. +..++......+++|+||||||||++|+.+++.+ +..++.++..
T Consensus 1 pla~~~RP~~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~----------~~~~~~l~a~ 70 (413)
T PRK13342 1 PLAERMRPKTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT----------DAPFEALSAV 70 (413)
T ss_pred ChhhhhCCCCHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEecc
Confidence 58999999999999999999776 8888888888899999999999999999999987 4455555432
Q ss_pred hhhccccccchHHHHHHHHHHHHH----hcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCCCeEEEEccC
Q 003088 356 LLMAGAKERGELEARVTTLISEIQ----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTT 431 (849)
Q Consensus 356 ~~~~~~~~~g~~e~~l~~l~~~~~----~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~~i~vI~at~ 431 (849)
.. + ...++.+++.+. .+++.||||||+|.+ ....++.|++.++++.+++|++|+
T Consensus 71 ~~--~-------~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l-------------~~~~q~~LL~~le~~~iilI~att 128 (413)
T PRK13342 71 TS--G-------VKDLREVIEEARQRRSAGRRTILFIDEIHRF-------------NKAQQDALLPHVEDGTITLIGATT 128 (413)
T ss_pred cc--c-------HHHHHHHHHHHHHhhhcCCceEEEEechhhh-------------CHHHHHHHHHHhhcCcEEEEEeCC
Confidence 11 1 122344444442 345689999999999 345678899999999999999988
Q ss_pred hHHHHHHhhccHHHHhccccEEecCCCHHHHHHHHHHHHHHHHhhcCC-ccCHHHHHHHHHhhhcccccCcchhhHHHHH
Q 003088 432 QDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNC-KFTLEAINAAVHLSARYISDRYLPDKAIDLV 510 (849)
Q Consensus 432 ~~~~~~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL~~~~~~~~~~~~~-~i~~~~l~~~a~ls~~~~~~r~~p~~ai~ll 510 (849)
.+. .+.+++++++||..+.|++++.++...+++..+...+ .++ .++++++..++..+.+.. ..+++++
T Consensus 129 ~n~---~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~--~~~i~i~~~al~~l~~~s~Gd~------R~aln~L 197 (413)
T PRK13342 129 ENP---SFEVNPALLSRAQVFELKPLSEEDIEQLLKRALEDKE--RGLVELDDEALDALARLANGDA------RRALNLL 197 (413)
T ss_pred CCh---hhhccHHHhccceeeEeCCCCHHHHHHHHHHHHHHhh--cCCCCCCHHHHHHHHHhCCCCH------HHHHHHH
Confidence 664 3578899999999999999999999999998776543 244 899999999998876543 4677777
Q ss_pred HHHhh
Q 003088 511 DEAGS 515 (849)
Q Consensus 511 ~~a~~ 515 (849)
+.++.
T Consensus 198 e~~~~ 202 (413)
T PRK13342 198 ELAAL 202 (413)
T ss_pred HHHHH
Confidence 77654
No 41
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.80 E-value=2.4e-18 Score=183.34 Aligned_cols=215 Identities=19% Similarity=0.212 Sum_probs=156.6
Q ss_pred CCCCccccHHHHHHHHHHHhc---------------CCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEe
Q 003088 288 LIDPVIGRETEIQRIIQILCR---------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSL 352 (849)
Q Consensus 288 ~l~~iiG~~~~i~~l~~~l~~---------------~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l 352 (849)
++++++|.++..+++.++... +...|++|+||||||||++|+++|+.+..... .....++.+
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~---~~~~~~v~~ 80 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNV---LSKGHLIEV 80 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCc---ccCCceEEe
Confidence 467899999888877654311 13467899999999999999999998854322 223457777
Q ss_pred ehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcC--CCeEEEEcc
Q 003088 353 DMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--GELQCIAST 430 (849)
Q Consensus 353 ~~~~~~~~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~--~~i~vI~at 430 (849)
+...+. ..+.|+.+..++.+++.+. ++||||||+|.|...+.. ..+.++++.|...++. +.+++|+++
T Consensus 81 ~~~~l~--~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~~~~-----~~~~~~i~~Ll~~~e~~~~~~~vila~ 150 (261)
T TIGR02881 81 ERADLV--GEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARGGEK-----DFGKEAIDTLVKGMEDNRNEFVLILAG 150 (261)
T ss_pred cHHHhh--hhhccchHHHHHHHHHhcc---CCEEEEechhhhccCCcc-----chHHHHHHHHHHHHhccCCCEEEEecC
Confidence 777765 3567888888888876653 469999999999532111 2245677888888774 567888888
Q ss_pred ChHHHHHHhhccHHHHhccc-cEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhcccc--c--Ccchhh
Q 003088 431 TQDEHRTQFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS--D--RYLPDK 505 (849)
Q Consensus 431 ~~~~~~~~~~~d~al~~Rf~-~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~~--~--r~~p~~ 505 (849)
+..+...++.++|+|++||. .|.|++++.+++.+|++.++. ..++.++++++..++....+... . ......
T Consensus 151 ~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~----~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~ 226 (261)
T TIGR02881 151 YSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVK----EREYKLTEEAKWKLREHLYKVDQLSSREFSNARY 226 (261)
T ss_pred CcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHH----HcCCccCHHHHHHHHHHHHHHHhccCCCCchHHH
Confidence 87776677889999999996 699999999999999998876 45778999999888776654421 1 112346
Q ss_pred HHHHHHHHhhHHHH
Q 003088 506 AIDLVDEAGSRAHI 519 (849)
Q Consensus 506 ai~ll~~a~~~~~~ 519 (849)
+.++++.|..+...
T Consensus 227 ~~n~~e~a~~~~~~ 240 (261)
T TIGR02881 227 VRNIIEKAIRRQAV 240 (261)
T ss_pred HHHHHHHHHHHHHH
Confidence 66777777665543
No 42
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.80 E-value=1.6e-18 Score=203.56 Aligned_cols=202 Identities=17% Similarity=0.216 Sum_probs=156.6
Q ss_pred hhhHHHHhhcCCCCccccHHHHHHHHHHHhcCCCCCC-eEeCCCCChHHHHHHHHHHHhhhCCCCc--ccc---------
Q 003088 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP-ILLGESGVGKTAIAEGLAIRIVQAEVPV--FLL--------- 345 (849)
Q Consensus 278 ~~l~~~~~~~~l~~iiG~~~~i~~l~~~l~~~~~~ni-LL~GppGtGKT~la~~la~~l~~~~~p~--~~~--------- 345 (849)
..|.++|||.+|+++||++..++.|..++...+..|. ||+||+|||||++|+.+|+.+.+..... .+.
T Consensus 4 ~~LaeKyRP~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~ 83 (944)
T PRK14949 4 QVLARKWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIA 83 (944)
T ss_pred hhHHHHhCCCCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHh
Confidence 4689999999999999999999999999988888887 8999999999999999999997642211 000
Q ss_pred ---CCeEEEeehhhhhccccccchHHHHHHHHHHHHH----hcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhh
Q 003088 346 ---SKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPS 418 (849)
Q Consensus 346 ---~~~~~~l~~~~~~~~~~~~g~~e~~l~~l~~~~~----~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~ 418 (849)
...++.++..+ ..+ .+.++.+++.+. .++..|+||||+|.| ..+++|.|++.
T Consensus 84 ~g~~~DviEidAas------~~k--VDdIReLie~v~~~P~~gk~KViIIDEAh~L-------------T~eAqNALLKt 142 (944)
T PRK14949 84 QGRFVDLIEVDAAS------RTK--VDDTRELLDNVQYRPSRGRFKVYLIDEVHML-------------SRSSFNALLKT 142 (944)
T ss_pred cCCCceEEEecccc------ccC--HHHHHHHHHHHHhhhhcCCcEEEEEechHhc-------------CHHHHHHHHHH
Confidence 01122222110 111 122344444443 345679999999999 56789999999
Q ss_pred hcC--CCeEEEEccChHHHHHHhhccHHHHhccccEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhcc
Q 003088 419 LGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496 (849)
Q Consensus 419 le~--~~i~vI~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~ 496 (849)
||. +.+++|++||... .+.+.+++||..+.|.+++.++..+.|+.++. ..++.++++++..++..+++.
T Consensus 143 LEEPP~~vrFILaTTe~~-----kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~----~EgI~~edeAL~lIA~~S~Gd 213 (944)
T PRK14949 143 LEEPPEHVKFLLATTDPQ-----KLPVTVLSRCLQFNLKSLTQDEIGTQLNHILT----QEQLPFEAEALTLLAKAANGS 213 (944)
T ss_pred HhccCCCeEEEEECCCch-----hchHHHHHhheEEeCCCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHcCCC
Confidence 996 6788998888876 57789999999999999999999999988776 458899999999999999885
Q ss_pred cccCcchhhHHHHHHHHhh
Q 003088 497 ISDRYLPDKAIDLVDEAGS 515 (849)
Q Consensus 497 ~~~r~~p~~ai~ll~~a~~ 515 (849)
+ ++++.+++.+++
T Consensus 214 ~------R~ALnLLdQala 226 (944)
T PRK14949 214 M------RDALSLTDQAIA 226 (944)
T ss_pred H------HHHHHHHHHHHH
Confidence 4 478888887664
No 43
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=1e-18 Score=189.28 Aligned_cols=204 Identities=22% Similarity=0.249 Sum_probs=143.9
Q ss_pred HhhcCCCCccccHHHHHHHHH---HHhcC---------CCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEE
Q 003088 284 ASEELIDPVIGRETEIQRIIQ---ILCRR---------TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMS 351 (849)
Q Consensus 284 ~~~~~l~~iiG~~~~i~~l~~---~l~~~---------~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~ 351 (849)
....+|+++-|.++..+.|.+ +|..+ -+..|||+||||||||.||+++|.+. +|| +|.
T Consensus 298 ~~nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA---~VP-------FF~ 367 (752)
T KOG0734|consen 298 MKNVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA---GVP-------FFY 367 (752)
T ss_pred hcccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc---CCC-------eEe
Confidence 344579999999976666555 44332 24689999999999999999999877 455 444
Q ss_pred eehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhh---c----CCCe
Q 003088 352 LDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL---G----RGEL 424 (849)
Q Consensus 352 l~~~~~~~~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~l---e----~~~i 424 (849)
..-+.+. ..+.|.-..+++++|.+++...|||+||||||.+=+.+... ...-+...|.++| + +..|
T Consensus 368 ~sGSEFd--Em~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~-----~~~y~kqTlNQLLvEmDGF~qNeGi 440 (752)
T KOG0734|consen 368 ASGSEFD--EMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPS-----DQHYAKQTLNQLLVEMDGFKQNEGI 440 (752)
T ss_pred ccccchh--hhhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCcc-----HHHHHHHHHHHHHHHhcCcCcCCce
Confidence 3333332 23466667889999999999999999999999995443331 1112233343333 2 5679
Q ss_pred EEEEccChHHHHHHhhccHHHHh--ccc-cEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhcccccCc
Q 003088 425 QCIASTTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRY 501 (849)
Q Consensus 425 ~vI~at~~~~~~~~~~~d~al~~--Rf~-~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~~~r~ 501 (849)
+||||||.++ .+|++|.| ||+ .|.+|.|+..-|.+||.....+. .+.-.++.. .+++-+-+ +
T Consensus 441 IvigATNfpe-----~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki--~~~~~VD~~---iiARGT~G-----F 505 (752)
T KOG0734|consen 441 IVIGATNFPE-----ALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKI--PLDEDVDPK---IIARGTPG-----F 505 (752)
T ss_pred EEEeccCChh-----hhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcC--CcccCCCHh---HhccCCCC-----C
Confidence 9999999999 99999999 998 59999999999999998877633 122234443 33444433 3
Q ss_pred chhhHHHHHHHHhhHHHH
Q 003088 502 LPDKAIDLVDEAGSRAHI 519 (849)
Q Consensus 502 ~p~~ai~ll~~a~~~~~~ 519 (849)
...+..++++.|+-.+.+
T Consensus 506 sGAdLaNlVNqAAlkAa~ 523 (752)
T KOG0734|consen 506 SGADLANLVNQAALKAAV 523 (752)
T ss_pred chHHHHHHHHHHHHHHHh
Confidence 346777888888766654
No 44
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.79 E-value=2e-18 Score=197.34 Aligned_cols=202 Identities=18% Similarity=0.186 Sum_probs=156.8
Q ss_pred hhHHHHhhcCCCCccccHHHHHHHHHHHhcCCCCCC-eEeCCCCChHHHHHHHHHHHhhhCCCCcc--c-----------
Q 003088 279 DLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP-ILLGESGVGKTAIAEGLAIRIVQAEVPVF--L----------- 344 (849)
Q Consensus 279 ~l~~~~~~~~l~~iiG~~~~i~~l~~~l~~~~~~ni-LL~GppGtGKT~la~~la~~l~~~~~p~~--~----------- 344 (849)
.|.++|||.+|+++||++..++.|..++...+..|. ||+||+|||||++|+++|+.+.+...+.. +
T Consensus 4 ~LarKyRPktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~ 83 (702)
T PRK14960 4 VLARKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNE 83 (702)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhc
Confidence 588999999999999999999999999988776665 99999999999999999999975321110 0
Q ss_pred -cCCeEEEeehhhhhccccccchHHHHHHHHHHHHH----hcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhh
Q 003088 345 -LSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL 419 (849)
Q Consensus 345 -~~~~~~~l~~~~~~~~~~~~g~~e~~l~~l~~~~~----~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~l 419 (849)
....++.+|..+- .+ .+.++.+++.+. .++..|+||||+|.| +..+++.|+..+
T Consensus 84 g~hpDviEIDAAs~------~~--VddIReli~~~~y~P~~gk~KV~IIDEVh~L-------------S~~A~NALLKtL 142 (702)
T PRK14960 84 GRFIDLIEIDAASR------TK--VEDTRELLDNVPYAPTQGRFKVYLIDEVHML-------------STHSFNALLKTL 142 (702)
T ss_pred CCCCceEEeccccc------CC--HHHHHHHHHHHhhhhhcCCcEEEEEechHhc-------------CHHHHHHHHHHH
Confidence 0123444443211 11 223455555443 245679999999999 445788999999
Q ss_pred cC--CCeEEEEccChHHHHHHhhccHHHHhccccEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhccc
Q 003088 420 GR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497 (849)
Q Consensus 420 e~--~~i~vI~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~ 497 (849)
+. +.+.+|++|+... .+.+.+++||..+.|.+++.++..+.|..++. ..++.++++++..++..+++-+
T Consensus 143 EEPP~~v~FILaTtd~~-----kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~----kEgI~id~eAL~~IA~~S~GdL 213 (702)
T PRK14960 143 EEPPEHVKFLFATTDPQ-----KLPITVISRCLQFTLRPLAVDEITKHLGAILE----KEQIAADQDAIWQIAESAQGSL 213 (702)
T ss_pred hcCCCCcEEEEEECChH-----hhhHHHHHhhheeeccCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHcCCCH
Confidence 87 6678888888765 56688999999999999999999999998887 6789999999999999998754
Q ss_pred ccCcchhhHHHHHHHHhhH
Q 003088 498 SDRYLPDKAIDLVDEAGSR 516 (849)
Q Consensus 498 ~~r~~p~~ai~ll~~a~~~ 516 (849)
..++++++.+++.
T Consensus 214 ------RdALnLLDQaIay 226 (702)
T PRK14960 214 ------RDALSLTDQAIAY 226 (702)
T ss_pred ------HHHHHHHHHHHHh
Confidence 4788888887754
No 45
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=3.7e-19 Score=186.05 Aligned_cols=160 Identities=26% Similarity=0.445 Sum_probs=124.7
Q ss_pred ccccccHHHHHHHHHHHHH--------hhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeecccccc
Q 003088 629 KRVIGQDEAVAAISRAVKR--------SRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYME 700 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~--------~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~ 700 (849)
+.|-|.++.++.|+.++.. ...|+.+|.. +|||||||||||++|+++|+. .+..|+++..+++..
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKG----VLLYGPPGTGKTLLAkAVA~~---T~AtFIrvvgSElVq 223 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKG----VLLYGPPGTGKTLLAKAVANQ---TDATFIRVVGSELVQ 223 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCc----eEeeCCCCCcHHHHHHHHHhc---cCceEEEeccHHHHH
Confidence 4578889999999988843 4567766543 999999999999999999988 477899999999866
Q ss_pred ccccccccCCCCCccccccC--cchhHHHHhCCCeEEEEeCcccc-----------CHHHHHHHHHHhhcCeeecCCCce
Q 003088 701 RHTVSKLIGSPPGYVGYEEG--GLLTEAIRRRPFTLLLLDEIEKA-----------HPDIFNILLQVFEDGHLTDSHGRR 767 (849)
Q Consensus 701 ~~~~~~l~g~~~g~vg~~~~--~~l~~~i~~~~~~vl~lDEid~l-----------~~~~~~~Ll~~le~g~~~~~~g~~ 767 (849)
+ |+|++.. ..++...+++..|||||||||.. +.++|-.|+++|..-.=.|+
T Consensus 224 K------------YiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~---- 287 (406)
T COG1222 224 K------------YIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDP---- 287 (406)
T ss_pred H------------HhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCC----
Confidence 4 5555431 23455556667799999999966 56799999888865221222
Q ss_pred eecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHh--hccccEEEcCCCCHHHHcc
Q 003088 768 VSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELL--NRIDEVVVFRSLEKAQVCQ 845 (849)
Q Consensus 768 ~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell--~R~d~~i~f~pl~~~~~~~ 845 (849)
..|+.||++||... .++|+|+ .|||..|.|+.++.+...+
T Consensus 288 --~~nvKVI~ATNR~D------------------------------------~LDPALLRPGR~DRkIEfplPd~~gR~~ 329 (406)
T COG1222 288 --RGNVKVIMATNRPD------------------------------------ILDPALLRPGRFDRKIEFPLPDEEGRAE 329 (406)
T ss_pred --CCCeEEEEecCCcc------------------------------------ccChhhcCCCcccceeecCCCCHHHHHH
Confidence 24899999999732 1789999 8999999999999999888
Q ss_pred ccCC
Q 003088 846 LPLI 849 (849)
Q Consensus 846 I~~l 849 (849)
|+++
T Consensus 330 Il~I 333 (406)
T COG1222 330 ILKI 333 (406)
T ss_pred HHHH
Confidence 8764
No 46
>PLN03025 replication factor C subunit; Provisional
Probab=99.78 E-value=2.1e-18 Score=189.18 Aligned_cols=196 Identities=15% Similarity=0.219 Sum_probs=148.9
Q ss_pred hhHHHHhhcCCCCccccHHHHHHHHHHHhcCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhh
Q 003088 279 DLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM 358 (849)
Q Consensus 279 ~l~~~~~~~~l~~iiG~~~~i~~l~~~l~~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~ 358 (849)
+|.++|||.+|++++|+++.+..+..++.....+|+||+||||||||++|+++|+.+..... ...+++++.+...
T Consensus 2 ~w~~kyrP~~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~-----~~~~~eln~sd~~ 76 (319)
T PLN03025 2 PWVEKYRPTKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNY-----KEAVLELNASDDR 76 (319)
T ss_pred ChhhhcCCCCHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcccC-----ccceeeecccccc
Confidence 79999999999999999999999999988888889999999999999999999999854321 1223444332211
Q ss_pred ccccccchHHHHHHHHHHHH---HhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcC--CCeEEEEccChH
Q 003088 359 AGAKERGELEARVTTLISEI---QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--GELQCIASTTQD 433 (849)
Q Consensus 359 ~~~~~~g~~e~~l~~l~~~~---~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~--~~i~vI~at~~~ 433 (849)
..+.+.+.++...... ..++..|+||||+|.| +.++++.|+..++. +...+|.++|..
T Consensus 77 ----~~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~l-------------t~~aq~aL~~~lE~~~~~t~~il~~n~~ 139 (319)
T PLN03025 77 ----GIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSM-------------TSGAQQALRRTMEIYSNTTRFALACNTS 139 (319)
T ss_pred ----cHHHHHHHHHHHHhccccCCCCCeEEEEEechhhc-------------CHHHHHHHHHHHhcccCCceEEEEeCCc
Confidence 1122333333221110 0123579999999999 34568888888884 446677777765
Q ss_pred HHHHHhhccHHHHhccccEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhcccccCcchhhHHHHHH
Q 003088 434 EHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVD 511 (849)
Q Consensus 434 ~~~~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~~~r~~p~~ai~ll~ 511 (849)
. .+.++|++||..++|++|+.++....|+.+++ .+++.++++++..++..+.+-+ .+++..++
T Consensus 140 ~-----~i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~~----~egi~i~~~~l~~i~~~~~gDl------R~aln~Lq 202 (319)
T PLN03025 140 S-----KIIEPIQSRCAIVRFSRLSDQEILGRLMKVVE----AEKVPYVPEGLEAIIFTADGDM------RQALNNLQ 202 (319)
T ss_pred c-----ccchhHHHhhhcccCCCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHcCCCH------HHHHHHHH
Confidence 4 66789999999999999999999999988887 6789999999999999888755 36677776
No 47
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.78 E-value=4.5e-18 Score=190.73 Aligned_cols=200 Identities=23% Similarity=0.280 Sum_probs=151.0
Q ss_pred CCCCccccHHHHHHHHHHHhc-------------CCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeeh
Q 003088 288 LIDPVIGRETEIQRIIQILCR-------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM 354 (849)
Q Consensus 288 ~l~~iiG~~~~i~~l~~~l~~-------------~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~ 354 (849)
.++++.|.+++++.+.+.+.. ..+.++||+||||||||++|+++|.++ +..++.++.
T Consensus 129 ~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~----------~~~~i~v~~ 198 (389)
T PRK03992 129 TYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET----------NATFIRVVG 198 (389)
T ss_pred CHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh----------CCCEEEeeh
Confidence 456899999999998886521 345789999999999999999999987 566778877
Q ss_pred hhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhc-------CCCeEEE
Q 003088 355 GLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG-------RGELQCI 427 (849)
Q Consensus 355 ~~~~~~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le-------~~~i~vI 427 (849)
+.+. .++.|+.+..++.+|+.++...++||||||+|.+++....+.. .+..+++..+..++. .+++.||
T Consensus 199 ~~l~--~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~--~~~~~~~~~l~~lL~~ld~~~~~~~v~VI 274 (389)
T PRK03992 199 SELV--QKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGT--SGDREVQRTLMQLLAEMDGFDPRGNVKII 274 (389)
T ss_pred HHHh--HhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCC--CccHHHHHHHHHHHHhccccCCCCCEEEE
Confidence 7765 3567888889999999998888999999999999865433211 123444444444442 3579999
Q ss_pred EccChHHHHHHhhccHHHHh--ccc-cEEecCCCHHHHHHHHHHHHHHHHhhcCCccCH-HHHHHHHHhhhcccccCcch
Q 003088 428 ASTTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTL-EAINAAVHLSARYISDRYLP 503 (849)
Q Consensus 428 ~at~~~~~~~~~~~d~al~~--Rf~-~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~-~~l~~~a~ls~~~~~~r~~p 503 (849)
+|||..+ .+|+++.| ||+ .|+|+.|+.++|.+||+.....+ .+.. ..+..++..+.+|. +
T Consensus 275 ~aTn~~~-----~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~------~~~~~~~~~~la~~t~g~s-----g 338 (389)
T PRK03992 275 AATNRID-----ILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKM------NLADDVDLEELAELTEGAS-----G 338 (389)
T ss_pred EecCChh-----hCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccC------CCCCcCCHHHHHHHcCCCC-----H
Confidence 9999886 78999997 997 69999999999999998766532 2221 23566777777654 4
Q ss_pred hhHHHHHHHHhhHH
Q 003088 504 DKAIDLVDEAGSRA 517 (849)
Q Consensus 504 ~~ai~ll~~a~~~~ 517 (849)
.+...++.+|+..+
T Consensus 339 adl~~l~~eA~~~a 352 (389)
T PRK03992 339 ADLKAICTEAGMFA 352 (389)
T ss_pred HHHHHHHHHHHHHH
Confidence 67777888877654
No 48
>CHL00181 cbbX CbbX; Provisional
Probab=99.78 E-value=1.1e-17 Score=179.38 Aligned_cols=213 Identities=18% Similarity=0.225 Sum_probs=151.5
Q ss_pred CccccHHHHHHHHHHHh---------------cCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehh
Q 003088 291 PVIGRETEIQRIIQILC---------------RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMG 355 (849)
Q Consensus 291 ~iiG~~~~i~~l~~~l~---------------~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~ 355 (849)
+++|.++.++++.++.. .....|++|+||||||||++|+++|+.+...++. ...+++.++..
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~---~~~~~~~v~~~ 100 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYI---KKGHLLTVTRD 100 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCC---CCCceEEecHH
Confidence 69999988887666531 0134568999999999999999999987543221 23457777766
Q ss_pred hhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcC--CCeEEEEccChH
Q 003088 356 LLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--GELQCIASTTQD 433 (849)
Q Consensus 356 ~~~~~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~--~~i~vI~at~~~ 433 (849)
.+.. .+.|+.+.+...+++.+ .++||||||+|.+...+.. .+.+.++++.|...++. +++++|++++..
T Consensus 101 ~l~~--~~~g~~~~~~~~~l~~a---~ggVLfIDE~~~l~~~~~~----~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~ 171 (287)
T CHL00181 101 DLVG--QYIGHTAPKTKEVLKKA---MGGVLFIDEAYYLYKPDNE----RDYGSEAIEILLQVMENQRDDLVVIFAGYKD 171 (287)
T ss_pred HHHH--HHhccchHHHHHHHHHc---cCCEEEEEccchhccCCCc----cchHHHHHHHHHHHHhcCCCCEEEEEeCCcH
Confidence 6653 34566666666666654 3569999999999643221 13457788889888874 568999999988
Q ss_pred HHHHHhhccHHHHhccc-cEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhcccccCcch--hhHHHHH
Q 003088 434 EHRTQFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLP--DKAIDLV 510 (849)
Q Consensus 434 ~~~~~~~~d~al~~Rf~-~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~~~r~~p--~~ai~ll 510 (849)
....++..+|+|.+||. .|.|++++.+++.+|+..+++ ..+..+++++...+..+..+-.....++ .....++
T Consensus 172 ~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~----~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~v 247 (287)
T CHL00181 172 RMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLE----EQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNAL 247 (287)
T ss_pred HHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHH----HhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHH
Confidence 77788888999999998 699999999999999998887 3466788888777666544322222222 3555666
Q ss_pred HHHhhHHHH
Q 003088 511 DEAGSRAHI 519 (849)
Q Consensus 511 ~~a~~~~~~ 519 (849)
+.+..+...
T Consensus 248 e~~~~~~~~ 256 (287)
T CHL00181 248 DRARMRQAN 256 (287)
T ss_pred HHHHHHHHH
Confidence 666555433
No 49
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.78 E-value=1e-18 Score=171.59 Aligned_cols=208 Identities=15% Similarity=0.271 Sum_probs=158.6
Q ss_pred CcchhHHhhhhhhHHHHhhcCCCCccccHHHHHHHHHHHhcCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCC
Q 003088 268 TRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSK 347 (849)
Q Consensus 268 ~~~~~l~~~~~~l~~~~~~~~l~~iiG~~~~i~~l~~~l~~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~ 347 (849)
++.+.-+.|..+|+++|||..++++||+++.+.++..+...++.+|++|.||||+||||-+.+||+++....+..
T Consensus 5 ~~~~~~~~~~l~wVeKYrP~~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke----- 79 (333)
T KOG0991|consen 5 SEMSKSDKYQLPWVEKYRPSVLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSYKE----- 79 (333)
T ss_pred ccCCccccccchHHHhhCchHHHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhh-----
Confidence 345556677888999999999999999999999999999999999999999999999999999999985422211
Q ss_pred eEEEeehhhhhccccccc--hHHHHHHHHHHHH-H--hcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhc--
Q 003088 348 RIMSLDMGLLMAGAKERG--ELEARVTTLISEI-Q--KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG-- 420 (849)
Q Consensus 348 ~~~~l~~~~~~~~~~~~g--~~e~~l~~l~~~~-~--~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le-- 420 (849)
-+++++.+ ..|| -...+++..-+.- . .+...|+++||+|.| +..+++.|+..+|
T Consensus 80 ~vLELNAS------deRGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSM-------------T~gAQQAlRRtMEiy 140 (333)
T KOG0991|consen 80 AVLELNAS------DERGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSM-------------TAGAQQALRRTMEIY 140 (333)
T ss_pred HhhhccCc------cccccHHHHHHHHHHHHhhccCCCCceeEEEeeccchh-------------hhHHHHHHHHHHHHH
Confidence 12233322 2333 2333344332211 1 134579999999999 4557889998887
Q ss_pred CCCeEEEEccChHHHHHHhhccHHHHhccccEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhcccccC
Q 003088 421 RGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500 (849)
Q Consensus 421 ~~~i~vI~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~~~r 500 (849)
....++..++|..+ .+-..+.+||..+.+...+..+..+-|..+.+ .+++.++++.++++...+++...
T Consensus 141 S~ttRFalaCN~s~-----KIiEPIQSRCAiLRysklsd~qiL~Rl~~v~k----~Ekv~yt~dgLeaiifta~GDMR-- 209 (333)
T KOG0991|consen 141 SNTTRFALACNQSE-----KIIEPIQSRCAILRYSKLSDQQILKRLLEVAK----AEKVNYTDDGLEAIIFTAQGDMR-- 209 (333)
T ss_pred cccchhhhhhcchh-----hhhhhHHhhhHhhhhcccCHHHHHHHHHHHHH----HhCCCCCcchHHHhhhhccchHH--
Confidence 67788888889877 66678999999999999999988777777666 77899999999999999988653
Q ss_pred cchhhHHHHHHHHh
Q 003088 501 YLPDKAIDLVDEAG 514 (849)
Q Consensus 501 ~~p~~ai~ll~~a~ 514 (849)
.+++.+....
T Consensus 210 ----QalNnLQst~ 219 (333)
T KOG0991|consen 210 ----QALNNLQSTV 219 (333)
T ss_pred ----HHHHHHHHHh
Confidence 4555554443
No 50
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.78 E-value=4e-18 Score=198.14 Aligned_cols=203 Identities=19% Similarity=0.199 Sum_probs=157.8
Q ss_pred hhhHHHHhhcCCCCccccHHHHHHHHHHHhcCCCCCC-eEeCCCCChHHHHHHHHHHHhhhCCCCc--cccCC-------
Q 003088 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP-ILLGESGVGKTAIAEGLAIRIVQAEVPV--FLLSK------- 347 (849)
Q Consensus 278 ~~l~~~~~~~~l~~iiG~~~~i~~l~~~l~~~~~~ni-LL~GppGtGKT~la~~la~~l~~~~~p~--~~~~~------- 347 (849)
..|.++|||.+|+++||++..++.|...+...+..|. ||+||+|||||++|+.+|+.+.+..... ....|
T Consensus 4 ~~La~KyRP~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~ 83 (647)
T PRK07994 4 QVLARKWRPQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIE 83 (647)
T ss_pred hhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHH
Confidence 3588999999999999999999999999988887786 8999999999999999999997642110 01011
Q ss_pred -----eEEEeehhhhhccccccchHHHHHHHHHHHHH----hcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhh
Q 003088 348 -----RIMSLDMGLLMAGAKERGELEARVTTLISEIQ----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPS 418 (849)
Q Consensus 348 -----~~~~l~~~~~~~~~~~~g~~e~~l~~l~~~~~----~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~ 418 (849)
.++.+|..+ ..+ .+.++.+++.+. .++..|+||||+|.| +..++|.|++.
T Consensus 84 ~g~~~D~ieidaas------~~~--VddiR~li~~~~~~p~~g~~KV~IIDEah~L-------------s~~a~NALLKt 142 (647)
T PRK07994 84 QGRFVDLIEIDAAS------RTK--VEDTRELLDNVQYAPARGRFKVYLIDEVHML-------------SRHSFNALLKT 142 (647)
T ss_pred cCCCCCceeecccc------cCC--HHHHHHHHHHHHhhhhcCCCEEEEEechHhC-------------CHHHHHHHHHH
Confidence 233333211 011 122445555443 245679999999999 45779999999
Q ss_pred hcC--CCeEEEEccChHHHHHHhhccHHHHhccccEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhcc
Q 003088 419 LGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496 (849)
Q Consensus 419 le~--~~i~vI~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~ 496 (849)
||. +.+.||++||... .+.+.+++||..+.|..++.++....|..++. ..++.++++++..++..+++.
T Consensus 143 LEEPp~~v~FIL~Tt~~~-----kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~----~e~i~~e~~aL~~Ia~~s~Gs 213 (647)
T PRK07994 143 LEEPPEHVKFLLATTDPQ-----KLPVTILSRCLQFHLKALDVEQIRQQLEHILQ----AEQIPFEPRALQLLARAADGS 213 (647)
T ss_pred HHcCCCCeEEEEecCCcc-----ccchHHHhhheEeeCCCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHcCCC
Confidence 997 6788888888776 67889999999999999999999999988776 558899999999999999886
Q ss_pred cccCcchhhHHHHHHHHhhH
Q 003088 497 ISDRYLPDKAIDLVDEAGSR 516 (849)
Q Consensus 497 ~~~r~~p~~ai~ll~~a~~~ 516 (849)
+ .+++.+++.+...
T Consensus 214 ~------R~Al~lldqaia~ 227 (647)
T PRK07994 214 M------RDALSLTDQAIAS 227 (647)
T ss_pred H------HHHHHHHHHHHHh
Confidence 5 5888888877643
No 51
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.77 E-value=6.1e-18 Score=194.40 Aligned_cols=202 Identities=19% Similarity=0.207 Sum_probs=157.1
Q ss_pred hhHHHHhhcCCCCccccHHHHHHHHHHHhcCCCCCC-eEeCCCCChHHHHHHHHHHHhhhCCCCcc--c-----------
Q 003088 279 DLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP-ILLGESGVGKTAIAEGLAIRIVQAEVPVF--L----------- 344 (849)
Q Consensus 279 ~l~~~~~~~~l~~iiG~~~~i~~l~~~l~~~~~~ni-LL~GppGtGKT~la~~la~~l~~~~~p~~--~----------- 344 (849)
.|.++|||.+|+++||++..++.|...+...+.+|. ||+||+|||||++|+.+|+.+.+...+.. .
T Consensus 5 ~l~~kyRP~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~ 84 (509)
T PRK14958 5 VLARKWRPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDE 84 (509)
T ss_pred hHHHHHCCCCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhc
Confidence 589999999999999999999999999988888885 89999999999999999999976432211 0
Q ss_pred -cCCeEEEeehhhhhccccccchHHHHHHHHHHHHH----hcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhh
Q 003088 345 -LSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL 419 (849)
Q Consensus 345 -~~~~~~~l~~~~~~~~~~~~g~~e~~l~~l~~~~~----~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~l 419 (849)
....++++|..+ ... .+.++.+++.+. .++..|+||||+|.| +.+++|.|+..|
T Consensus 85 g~~~d~~eidaas----~~~----v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~l-------------s~~a~naLLk~L 143 (509)
T PRK14958 85 GRFPDLFEVDAAS----RTK----VEDTRELLDNIPYAPTKGRFKVYLIDEVHML-------------SGHSFNALLKTL 143 (509)
T ss_pred CCCceEEEEcccc----cCC----HHHHHHHHHHHhhccccCCcEEEEEEChHhc-------------CHHHHHHHHHHH
Confidence 012355554321 111 122455555443 234579999999999 456788899999
Q ss_pred cC--CCeEEEEccChHHHHHHhhccHHHHhccccEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhccc
Q 003088 420 GR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497 (849)
Q Consensus 420 e~--~~i~vI~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~ 497 (849)
|. ..+.+|++||... .+.+.+++||..++|.+++.++..+.+..+++ ..++.++++++..++..+++-.
T Consensus 144 Eepp~~~~fIlattd~~-----kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~----~egi~~~~~al~~ia~~s~Gsl 214 (509)
T PRK14958 144 EEPPSHVKFILATTDHH-----KLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLK----EENVEFENAALDLLARAANGSV 214 (509)
T ss_pred hccCCCeEEEEEECChH-----hchHHHHHHhhhhhcCCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHcCCcH
Confidence 86 4688888887664 56778999999999999999999999888877 5688999999999999888643
Q ss_pred ccCcchhhHHHHHHHHhhH
Q 003088 498 SDRYLPDKAIDLVDEAGSR 516 (849)
Q Consensus 498 ~~r~~p~~ai~ll~~a~~~ 516 (849)
.+++.+++.+++.
T Consensus 215 ------R~al~lLdq~ia~ 227 (509)
T PRK14958 215 ------RDALSLLDQSIAY 227 (509)
T ss_pred ------HHHHHHHHHHHhc
Confidence 5888999888654
No 52
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.77 E-value=8.6e-18 Score=191.20 Aligned_cols=201 Identities=20% Similarity=0.237 Sum_probs=150.5
Q ss_pred hhHHHHhhcCCCCccccHHHHHHHHHHHhcCCCCC-CeEeCCCCChHHHHHHHHHHHhhhCCCCccc-------------
Q 003088 279 DLTARASEELIDPVIGRETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEVPVFL------------- 344 (849)
Q Consensus 279 ~l~~~~~~~~l~~iiG~~~~i~~l~~~l~~~~~~n-iLL~GppGtGKT~la~~la~~l~~~~~p~~~------------- 344 (849)
.|.++|||.+|++++|++..++.+...+...+.+| +||+|||||||||+|+.+|+.+.+...+...
T Consensus 3 ~l~~kyRP~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~ 82 (472)
T PRK14962 3 ALYRKYRPKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDE 82 (472)
T ss_pred hhHHHHCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhc
Confidence 57899999999999999999999999888777766 6999999999999999999998653221100
Q ss_pred -cCCeEEEeehhhhhccccccchHHHHHHHHHHHHHh----cCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhh
Q 003088 345 -LSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL 419 (849)
Q Consensus 345 -~~~~~~~l~~~~~~~~~~~~g~~e~~l~~l~~~~~~----~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~l 419 (849)
....++.++.. ..+| ...++.+.+.+.. +...|+||||+|.| +.++++.|+..+
T Consensus 83 g~~~dv~el~aa------~~~g--id~iR~i~~~~~~~p~~~~~kVvIIDE~h~L-------------t~~a~~~LLk~L 141 (472)
T PRK14962 83 GTFMDVIELDAA------SNRG--IDEIRKIRDAVGYRPMEGKYKVYIIDEVHML-------------TKEAFNALLKTL 141 (472)
T ss_pred CCCCccEEEeCc------ccCC--HHHHHHHHHHHhhChhcCCeEEEEEEChHHh-------------HHHHHHHHHHHH
Confidence 01133444321 1122 1223444444332 34579999999999 345678888888
Q ss_pred cC--CCeEEEEccChHHHHHHhhccHHHHhccccEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhccc
Q 003088 420 GR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497 (849)
Q Consensus 420 e~--~~i~vI~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~ 497 (849)
++ +.+++|++|+... .+.+++.+||+.+.|.+++.++...+++..+. ..++.++++++..++..+.+-+
T Consensus 142 E~p~~~vv~Ilattn~~-----kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~----~egi~i~~eal~~Ia~~s~Gdl 212 (472)
T PRK14962 142 EEPPSHVVFVLATTNLE-----KVPPTIISRCQVIEFRNISDELIIKRLQEVAE----AEGIEIDREALSFIAKRASGGL 212 (472)
T ss_pred HhCCCcEEEEEEeCChH-----hhhHHHhcCcEEEEECCccHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHhCCCH
Confidence 86 6788888877544 67899999999999999999999999988776 5688999999999999887644
Q ss_pred ccCcchhhHHHHHHHHhh
Q 003088 498 SDRYLPDKAIDLVDEAGS 515 (849)
Q Consensus 498 ~~r~~p~~ai~ll~~a~~ 515 (849)
. .++..++.++.
T Consensus 213 R------~aln~Le~l~~ 224 (472)
T PRK14962 213 R------DALTMLEQVWK 224 (472)
T ss_pred H------HHHHHHHHHHH
Confidence 3 57777776554
No 53
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.77 E-value=1.1e-17 Score=186.69 Aligned_cols=202 Identities=20% Similarity=0.261 Sum_probs=148.8
Q ss_pred CCCCccccHHHHHHHHHHHhc-------------CCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeeh
Q 003088 288 LIDPVIGRETEIQRIIQILCR-------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM 354 (849)
Q Consensus 288 ~l~~iiG~~~~i~~l~~~l~~-------------~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~ 354 (849)
.++++.|.+.+++.+.+.+.- ..+.++||+||||||||++|+++|..+ +..++.+..
T Consensus 143 ~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l----------~~~fi~i~~ 212 (398)
T PTZ00454 143 TYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT----------TATFIRVVG 212 (398)
T ss_pred CHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc----------CCCEEEEeh
Confidence 577899999998888775521 245789999999999999999999987 556677666
Q ss_pred hhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhh---c----CCCeEEE
Q 003088 355 GLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL---G----RGELQCI 427 (849)
Q Consensus 355 ~~~~~~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~l---e----~~~i~vI 427 (849)
..+. .++.|+.+..++.+|..++...|+||||||+|.+...+..... +.....+..+..++ + ..++.+|
T Consensus 213 s~l~--~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~--~~d~~~~r~l~~LL~~ld~~~~~~~v~VI 288 (398)
T PTZ00454 213 SEFV--QKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQT--GADREVQRILLELLNQMDGFDQTTNVKVI 288 (398)
T ss_pred HHHH--HHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccC--CccHHHHHHHHHHHHHhhccCCCCCEEEE
Confidence 5554 3567888889999999999989999999999999765422111 12233444443333 2 3578999
Q ss_pred EccChHHHHHHhhccHHHHh--ccc-cEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhcccccCcchh
Q 003088 428 ASTTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPD 504 (849)
Q Consensus 428 ~at~~~~~~~~~~~d~al~~--Rf~-~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~~~r~~p~ 504 (849)
++||..+ .+|+++.| ||+ .|+|+.|+.++|..||+.+..++ ++. .+-.+..++..+.+| .+.
T Consensus 289 ~aTN~~d-----~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~----~l~-~dvd~~~la~~t~g~-----sga 353 (398)
T PTZ00454 289 MATNRAD-----TLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKM----NLS-EEVDLEDFVSRPEKI-----SAA 353 (398)
T ss_pred EecCCch-----hCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcC----CCC-cccCHHHHHHHcCCC-----CHH
Confidence 9999887 89999998 997 69999999999999999877633 222 122355666666665 456
Q ss_pred hHHHHHHHHhhHHH
Q 003088 505 KAIDLVDEAGSRAH 518 (849)
Q Consensus 505 ~ai~ll~~a~~~~~ 518 (849)
+...++.+|+..+.
T Consensus 354 DI~~l~~eA~~~A~ 367 (398)
T PTZ00454 354 DIAAICQEAGMQAV 367 (398)
T ss_pred HHHHHHHHHHHHHH
Confidence 77788888876543
No 54
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.77 E-value=9.9e-18 Score=189.62 Aligned_cols=203 Identities=18% Similarity=0.224 Sum_probs=159.5
Q ss_pred hhHHHHhhcCCCCccccHHHHHHHHHHHhcCCCC-CCeEeCCCCChHHHHHHHHHHHhhhCCCCcc--------------
Q 003088 279 DLTARASEELIDPVIGRETEIQRIIQILCRRTKN-NPILLGESGVGKTAIAEGLAIRIVQAEVPVF-------------- 343 (849)
Q Consensus 279 ~l~~~~~~~~l~~iiG~~~~i~~l~~~l~~~~~~-niLL~GppGtGKT~la~~la~~l~~~~~p~~-------------- 343 (849)
.|..+|||.+|+++||++..++.|...+...+.+ ++||+||+|+||||+|+.+|+.+++...|..
T Consensus 2 ~la~KyRP~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~ 81 (491)
T PRK14964 2 NLALKYRPSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKN 81 (491)
T ss_pred ChhHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhc
Confidence 5788999999999999999999999988776665 5899999999999999999999876433321
Q ss_pred ccCCeEEEeehhhhhccccccchHHHHHHHHHHHHHh----cCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhh
Q 003088 344 LLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL 419 (849)
Q Consensus 344 ~~~~~~~~l~~~~~~~~~~~~g~~e~~l~~l~~~~~~----~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~l 419 (849)
..+..++++|..+. .| .+.++.+++.+.. +...|+||||+|.| +..++|.|+.++
T Consensus 82 ~~~~Dv~eidaas~------~~--vddIR~Iie~~~~~P~~~~~KVvIIDEah~L-------------s~~A~NaLLK~L 140 (491)
T PRK14964 82 SNHPDVIEIDAASN------TS--VDDIKVILENSCYLPISSKFKVYIIDEVHML-------------SNSAFNALLKTL 140 (491)
T ss_pred cCCCCEEEEecccC------CC--HHHHHHHHHHHHhccccCCceEEEEeChHhC-------------CHHHHHHHHHHH
Confidence 12345566654321 11 2235556665543 34579999999999 456788999999
Q ss_pred cC--CCeEEEEccChHHHHHHhhccHHHHhccccEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhccc
Q 003088 420 GR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497 (849)
Q Consensus 420 e~--~~i~vI~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~ 497 (849)
|+ +.+.+|++|+... .+.+.+++||+.+.|.+++.++..+.+..+++ ..++.++++++..++..+++.+
T Consensus 141 EePp~~v~fIlatte~~-----Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~----~Egi~i~~eAL~lIa~~s~Gsl 211 (491)
T PRK14964 141 EEPAPHVKFILATTEVK-----KIPVTIISRCQRFDLQKIPTDKLVEHLVDIAK----KENIEHDEESLKLIAENSSGSM 211 (491)
T ss_pred hCCCCCeEEEEEeCChH-----HHHHHHHHhheeeecccccHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHcCCCH
Confidence 86 5688888887665 56789999999999999999999999988887 6789999999999999998754
Q ss_pred ccCcchhhHHHHHHHHhhHH
Q 003088 498 SDRYLPDKAIDLVDEAGSRA 517 (849)
Q Consensus 498 ~~r~~p~~ai~ll~~a~~~~ 517 (849)
..+..+++.++...
T Consensus 212 ------R~alslLdqli~y~ 225 (491)
T PRK14964 212 ------RNALFLLEQAAIYS 225 (491)
T ss_pred ------HHHHHHHHHHHHhc
Confidence 46788888887643
No 55
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.77 E-value=1.9e-17 Score=176.37 Aligned_cols=160 Identities=16% Similarity=0.136 Sum_probs=122.0
Q ss_pred cCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhccccccchHHHHHHHHHHHHHh-----cC
Q 003088 308 RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK-----SG 382 (849)
Q Consensus 308 ~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~~~~~~g~~e~~l~~l~~~~~~-----~~ 382 (849)
.+.+..++|+||||||||.+|+++|.++ ++.++.++.+.+. .++.|+.|..++.+|+.++. ..
T Consensus 145 ik~PlgllL~GPPGcGKTllAraiA~el----------g~~~i~vsa~eL~--sk~vGEsEk~IR~~F~~A~~~a~~~~a 212 (413)
T PLN00020 145 IKVPLILGIWGGKGQGKSFQCELVFKKM----------GIEPIVMSAGELE--SENAGEPGKLIRQRYREAADIIKKKGK 212 (413)
T ss_pred CCCCeEEEeeCCCCCCHHHHHHHHHHHc----------CCCeEEEEHHHhh--cCcCCcHHHHHHHHHHHHHHHhhccCC
Confidence 3556678999999999999999999999 7888999998888 57799999999999998874 46
Q ss_pred CeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhc----------------CCCeEEEEccChHHHHHHhhccHHHH
Q 003088 383 DVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG----------------RGELQCIASTTQDEHRTQFEKDKALA 446 (849)
Q Consensus 383 ~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le----------------~~~i~vI~at~~~~~~~~~~~d~al~ 446 (849)
|+||||||||.+++..+...+ .....-+...|...++ ...+.||+|||..+ .++++|+
T Consensus 213 PcVLFIDEIDA~~g~r~~~~~-tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd-----~LDpALl 286 (413)
T PLN00020 213 MSCLFINDLDAGAGRFGTTQY-TVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFS-----TLYAPLI 286 (413)
T ss_pred CeEEEEehhhhcCCCCCCCCc-chHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcc-----cCCHhHc
Confidence 999999999999876542111 0011122234443332 35689999999987 8999999
Q ss_pred h--ccccEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHh
Q 003088 447 R--RFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHL 492 (849)
Q Consensus 447 ~--Rf~~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~l 492 (849)
| ||++. +..|+.++|.+||+.+.++ ..++...+..+++-
T Consensus 287 RpGRfDk~-i~lPd~e~R~eIL~~~~r~------~~l~~~dv~~Lv~~ 327 (413)
T PLN00020 287 RDGRMEKF-YWAPTREDRIGVVHGIFRD------DGVSREDVVKLVDT 327 (413)
T ss_pred CCCCCCce-eCCCCHHHHHHHHHHHhcc------CCCCHHHHHHHHHc
Confidence 9 99974 4689999999999987762 24555555555443
No 56
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.76 E-value=8.8e-18 Score=199.28 Aligned_cols=200 Identities=25% Similarity=0.329 Sum_probs=152.9
Q ss_pred hhHHHHhhcCCCCccccHHHHH---HHHHHHhcCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehh
Q 003088 279 DLTARASEELIDPVIGRETEIQ---RIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMG 355 (849)
Q Consensus 279 ~l~~~~~~~~l~~iiG~~~~i~---~l~~~l~~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~ 355 (849)
+|.+++||.+|++++|++..+. .+..++......+++|+||||||||++|+++++.+ +.+++.++..
T Consensus 17 PLaek~RP~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~----------~~~f~~lna~ 86 (725)
T PRK13341 17 PLADRLRPRTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHT----------RAHFSSLNAV 86 (725)
T ss_pred ChHHhcCCCcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHh----------cCcceeehhh
Confidence 8999999999999999999884 57777777888899999999999999999999876 3344444432
Q ss_pred hhhccccccchHHHHHHHHHHHHHh-cCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCCCeEEEEccChHH
Q 003088 356 LLMAGAKERGELEARVTTLISEIQK-SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDE 434 (849)
Q Consensus 356 ~~~~~~~~~g~~e~~l~~l~~~~~~-~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~~i~vI~at~~~~ 434 (849)
..+. .+..+.+..+...... ....||||||+|.+ ....++.|++.++++.+++|++|+.+.
T Consensus 87 --~~~i---~dir~~i~~a~~~l~~~~~~~IL~IDEIh~L-------------n~~qQdaLL~~lE~g~IiLI~aTTenp 148 (725)
T PRK13341 87 --LAGV---KDLRAEVDRAKERLERHGKRTILFIDEVHRF-------------NKAQQDALLPWVENGTITLIGATTENP 148 (725)
T ss_pred --hhhh---HHHHHHHHHHHHHhhhcCCceEEEEeChhhC-------------CHHHHHHHHHHhcCceEEEEEecCCCh
Confidence 1111 1222222222111111 34579999999999 345678889999999999999998765
Q ss_pred HHHHhhccHHHHhccccEEecCCCHHHHHHHHHHHHHHHHh---hcCCccCHHHHHHHHHhhhcccccCcchhhHHHHHH
Q 003088 435 HRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEA---HHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVD 511 (849)
Q Consensus 435 ~~~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL~~~~~~~~~---~~~~~i~~~~l~~~a~ls~~~~~~r~~p~~ai~ll~ 511 (849)
++.+++++.+|+..+.|++++.+++..+|+..+..+.. ..++.++++++..++..+.+.+ ..++++++
T Consensus 149 ---~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~------R~lln~Le 219 (725)
T PRK13341 149 ---YFEVNKALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDA------RSLLNALE 219 (725)
T ss_pred ---HhhhhhHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCH------HHHHHHHH
Confidence 45678999999999999999999999999998775433 3468899999999999886644 36777777
Q ss_pred HHhh
Q 003088 512 EAGS 515 (849)
Q Consensus 512 ~a~~ 515 (849)
.++.
T Consensus 220 ~a~~ 223 (725)
T PRK13341 220 LAVE 223 (725)
T ss_pred HHHH
Confidence 7654
No 57
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.76 E-value=4.6e-17 Score=197.53 Aligned_cols=202 Identities=20% Similarity=0.269 Sum_probs=154.6
Q ss_pred CCCCccccHHHHHHHHHHHh-------------cCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeeh
Q 003088 288 LIDPVIGRETEIQRIIQILC-------------RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM 354 (849)
Q Consensus 288 ~l~~iiG~~~~i~~l~~~l~-------------~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~ 354 (849)
.++++.|.+...+.+.+.+. .+.+.++||+||||||||++|+++|.++ ++.++.++.
T Consensus 451 ~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~----------~~~fi~v~~ 520 (733)
T TIGR01243 451 RWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATES----------GANFIAVRG 520 (733)
T ss_pred chhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc----------CCCEEEEeh
Confidence 57889999988888777652 1234678999999999999999999988 677888887
Q ss_pred hhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhc----CCCeEEEEcc
Q 003088 355 GLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG----RGELQCIAST 430 (849)
Q Consensus 355 ~~~~~~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le----~~~i~vI~at 430 (849)
..+. .++.|+.+..++.+|+.++...++||||||+|.+++..+...+ ......+.+.|+..++ ..+++||+||
T Consensus 521 ~~l~--~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~-~~~~~~~~~~lL~~ldg~~~~~~v~vI~aT 597 (733)
T TIGR01243 521 PEIL--SKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFD-TSVTDRIVNQLLTEMDGIQELSNVVVIAAT 597 (733)
T ss_pred HHHh--hcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCC-ccHHHHHHHHHHHHhhcccCCCCEEEEEeC
Confidence 7766 4678999999999999999999999999999999876543211 1123345565555553 4679999999
Q ss_pred ChHHHHHHhhccHHHHh--ccc-cEEecCCCHHHHHHHHHHHHHHHHhhcCCccCH-HHHHHHHHhhhcccccCcchhhH
Q 003088 431 TQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTL-EAINAAVHLSARYISDRYLPDKA 506 (849)
Q Consensus 431 ~~~~~~~~~~~d~al~~--Rf~-~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~-~~l~~~a~ls~~~~~~r~~p~~a 506 (849)
|..+ .+|+++.| ||+ .|+|+.|+.++|.+||+.... +..+++ ..+..++..+.+|.. .+.
T Consensus 598 n~~~-----~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~------~~~~~~~~~l~~la~~t~g~sg-----adi 661 (733)
T TIGR01243 598 NRPD-----ILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTR------SMPLAEDVDLEELAEMTEGYTG-----ADI 661 (733)
T ss_pred CChh-----hCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhc------CCCCCccCCHHHHHHHcCCCCH-----HHH
Confidence 9987 89999998 998 699999999999999975543 233332 247778888887653 555
Q ss_pred HHHHHHHhhHHH
Q 003088 507 IDLVDEAGSRAH 518 (849)
Q Consensus 507 i~ll~~a~~~~~ 518 (849)
..++.+|+..+.
T Consensus 662 ~~~~~~A~~~a~ 673 (733)
T TIGR01243 662 EAVCREAAMAAL 673 (733)
T ss_pred HHHHHHHHHHHH
Confidence 666766665443
No 58
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.76 E-value=1.8e-17 Score=191.86 Aligned_cols=202 Identities=18% Similarity=0.146 Sum_probs=156.3
Q ss_pred hhHHHHhhcCCCCccccHHHHHHHHHHHhcCCCCCC-eEeCCCCChHHHHHHHHHHHhhhCCCCcc--c-----------
Q 003088 279 DLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP-ILLGESGVGKTAIAEGLAIRIVQAEVPVF--L----------- 344 (849)
Q Consensus 279 ~l~~~~~~~~l~~iiG~~~~i~~l~~~l~~~~~~ni-LL~GppGtGKT~la~~la~~l~~~~~p~~--~----------- 344 (849)
.|.++|||.+|+++||++..++.|...+...+..|. ||+||+|||||++|+.+|+.+.+...+.. .
T Consensus 2 al~~kyRP~~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~ 81 (584)
T PRK14952 2 ALYRKYRPATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAP 81 (584)
T ss_pred cHHHHhCCCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhc
Confidence 367899999999999999999999999998888885 89999999999999999999975332210 0
Q ss_pred ---cCCeEEEeehhhhhccccccchHHHHHHHHHHHHH----hcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhh
Q 003088 345 ---LSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKP 417 (849)
Q Consensus 345 ---~~~~~~~l~~~~~~~~~~~~g~~e~~l~~l~~~~~----~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~ 417 (849)
....++++|..+ ..| .+.++.+.+.+. .+...|+||||+|.| +..++|.|+.
T Consensus 82 ~~~~~~dvieidaas------~~g--vd~iRel~~~~~~~P~~~~~KVvIIDEah~L-------------t~~A~NALLK 140 (584)
T PRK14952 82 NGPGSIDVVELDAAS------HGG--VDDTRELRDRAFYAPAQSRYRIFIVDEAHMV-------------TTAGFNALLK 140 (584)
T ss_pred ccCCCceEEEecccc------ccC--HHHHHHHHHHHHhhhhcCCceEEEEECCCcC-------------CHHHHHHHHH
Confidence 123344443321 111 122344444433 245679999999999 4568999999
Q ss_pred hhcC--CCeEEEEccChHHHHHHhhccHHHHhccccEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhc
Q 003088 418 SLGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495 (849)
Q Consensus 418 ~le~--~~i~vI~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~ 495 (849)
.||. +.+++|++|+..+ .+.+++++||+.+.|..++.++..+.|..+++ ..++.++++++..++..+.+
T Consensus 141 ~LEEpp~~~~fIL~tte~~-----kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~----~egi~i~~~al~~Ia~~s~G 211 (584)
T PRK14952 141 IVEEPPEHLIFIFATTEPE-----KVLPTIRSRTHHYPFRLLPPRTMRALIARICE----QEGVVVDDAVYPLVIRAGGG 211 (584)
T ss_pred HHhcCCCCeEEEEEeCChH-----hhHHHHHHhceEEEeeCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHcCC
Confidence 9996 6788888888775 77889999999999999999999999988777 56889999999999988876
Q ss_pred ccccCcchhhHHHHHHHHhhH
Q 003088 496 YISDRYLPDKAIDLVDEAGSR 516 (849)
Q Consensus 496 ~~~~r~~p~~ai~ll~~a~~~ 516 (849)
-+ ..++.+++..+..
T Consensus 212 dl------R~aln~Ldql~~~ 226 (584)
T PRK14952 212 SP------RDTLSVLDQLLAG 226 (584)
T ss_pred CH------HHHHHHHHHHHhc
Confidence 44 4778888877653
No 59
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=1.7e-17 Score=181.30 Aligned_cols=205 Identities=21% Similarity=0.264 Sum_probs=161.7
Q ss_pred HHhhcCCCCccccHHHHHHHHHHH------------hcCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEE
Q 003088 283 RASEELIDPVIGRETEIQRIIQIL------------CRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIM 350 (849)
Q Consensus 283 ~~~~~~l~~iiG~~~~i~~l~~~l------------~~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~ 350 (849)
..++-.++++-|.+...+.+.+.+ .+.....+||.||||+|||+|++++|-+. +..++
T Consensus 146 ~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~----------~atff 215 (428)
T KOG0740|consen 146 TLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATES----------GATFF 215 (428)
T ss_pred cCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhh----------cceEe
Confidence 334556889999887777766643 33445688999999999999999999988 77888
Q ss_pred EeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHH-HHHHhhhh-----cCCCe
Q 003088 351 SLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDI-SNLLKPSL-----GRGEL 424 (849)
Q Consensus 351 ~l~~~~~~~~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~-~~~L~~~l-----e~~~i 424 (849)
.+..+++. .+|.|+.|..++.+|.-++...|.|+||||+|.++..+..... +.+... .+.|.+.. ...+|
T Consensus 216 ~iSassLt--sK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~--e~srr~ktefLiq~~~~~s~~~drv 291 (428)
T KOG0740|consen 216 NISASSLT--SKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEH--ESSRRLKTEFLLQFDGKNSAPDDRV 291 (428)
T ss_pred eccHHHhh--hhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCccc--ccchhhhhHHHhhhccccCCCCCeE
Confidence 88777776 6889999999999999999999999999999999987643211 233332 23333332 25689
Q ss_pred EEEEccChHHHHHHhhccHHHHhccc-cEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhcccccCcch
Q 003088 425 QCIASTTQDEHRTQFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLP 503 (849)
Q Consensus 425 ~vI~at~~~~~~~~~~~d~al~~Rf~-~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~~~r~~p 503 (849)
++|||||.+. ++|.+++|||+ +++|+.|+.+.|..+|..++.+ ++..+.+..+..+++++++|-.
T Consensus 292 lvigaTN~P~-----e~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~----~~~~l~~~d~~~l~~~Tegysg----- 357 (428)
T KOG0740|consen 292 LVIGATNRPW-----ELDEAARRRFVKRLYIPLPDYETRSLLWKQLLKE----QPNGLSDLDISLLAKVTEGYSG----- 357 (428)
T ss_pred EEEecCCCch-----HHHHHHHHHhhceeeecCCCHHHHHHHHHHHHHh----CCCCccHHHHHHHHHHhcCccc-----
Confidence 9999999986 99999999998 6999999999999999998873 3567788899999999999875
Q ss_pred hhHHHHHHHHhh
Q 003088 504 DKAIDLVDEAGS 515 (849)
Q Consensus 504 ~~ai~ll~~a~~ 515 (849)
.+..+++.+|..
T Consensus 358 sdi~~l~kea~~ 369 (428)
T KOG0740|consen 358 SDITALCKEAAM 369 (428)
T ss_pred ccHHHHHHHhhc
Confidence 345566666644
No 60
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.76 E-value=1.2e-17 Score=193.84 Aligned_cols=203 Identities=21% Similarity=0.271 Sum_probs=147.8
Q ss_pred cCCCCccccHHHHHHHHHHHh------------cCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeeh
Q 003088 287 ELIDPVIGRETEIQRIIQILC------------RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM 354 (849)
Q Consensus 287 ~~l~~iiG~~~~i~~l~~~l~------------~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~ 354 (849)
.+|++++|.++....+.+++. ...+.++||+||||||||++|+++|... +.+++.++.
T Consensus 52 ~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~----------~~~~~~i~~ 121 (495)
T TIGR01241 52 VTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA----------GVPFFSISG 121 (495)
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc----------CCCeeeccH
Confidence 357789999887776665442 2345689999999999999999999887 667777777
Q ss_pred hhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCC-CCccHHHHHHHhhhh----cCCCeEEEEc
Q 003088 355 GLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGN-KGTGLDISNLLKPSL----GRGELQCIAS 429 (849)
Q Consensus 355 ~~~~~~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~-~~~~~~~~~~L~~~l----e~~~i~vI~a 429 (849)
..+.. .+.|..+..++.+|+.++...|+||||||+|.+......+.++ ........+.|+..+ +++.++||+|
T Consensus 122 ~~~~~--~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~a 199 (495)
T TIGR01241 122 SDFVE--MFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAA 199 (495)
T ss_pred HHHHH--HHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEe
Confidence 66552 3466778889999999998889999999999998654432111 011223344444444 3567999999
Q ss_pred cChHHHHHHhhccHHHHh--ccc-cEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhcccccCcchhhH
Q 003088 430 TTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKA 506 (849)
Q Consensus 430 t~~~~~~~~~~~d~al~~--Rf~-~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~~~r~~p~~a 506 (849)
||..+ .+|+++.| ||+ .|.|+.|+.++|.+||+.+.... ... ++..+..++..+.+|. +.+.
T Consensus 200 Tn~~~-----~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~----~~~-~~~~l~~la~~t~G~s-----gadl 264 (495)
T TIGR01241 200 TNRPD-----VLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNK----KLA-PDVDLKAVARRTPGFS-----GADL 264 (495)
T ss_pred cCChh-----hcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcC----CCC-cchhHHHHHHhCCCCC-----HHHH
Confidence 99987 89999998 897 69999999999999998876522 221 3344667777777654 3566
Q ss_pred HHHHHHHhhH
Q 003088 507 IDLVDEAGSR 516 (849)
Q Consensus 507 i~ll~~a~~~ 516 (849)
..++.+|+..
T Consensus 265 ~~l~~eA~~~ 274 (495)
T TIGR01241 265 ANLLNEAALL 274 (495)
T ss_pred HHHHHHHHHH
Confidence 6777776543
No 61
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=1.4e-17 Score=186.11 Aligned_cols=197 Identities=22% Similarity=0.261 Sum_probs=159.6
Q ss_pred CCCCccccHHHHHHHHHHHhc-------------CCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeeh
Q 003088 288 LIDPVIGRETEIQRIIQILCR-------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM 354 (849)
Q Consensus 288 ~l~~iiG~~~~i~~l~~~l~~-------------~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~ 354 (849)
..+++-|..+..+.+.+++.- +-..++|||||||||||.+|-++|... +.+++++.-
T Consensus 665 ~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~----------~~~fisvKG 734 (952)
T KOG0735|consen 665 RWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNS----------NLRFISVKG 734 (952)
T ss_pred CceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhC----------CeeEEEecC
Confidence 466888888888888776622 234689999999999999999999887 788999887
Q ss_pred hhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcC----CCeEEEEcc
Q 003088 355 GLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR----GELQCIAST 430 (849)
Q Consensus 355 ~~~~~~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~----~~i~vI~at 430 (849)
..++ .+|.|..|+.++.+|..+....|||||+||+|.+.|.++.+.. +-+..+.|.|+..|+. .++.+++||
T Consensus 735 PElL--~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsT--GVTDRVVNQlLTelDG~Egl~GV~i~aaT 810 (952)
T KOG0735|consen 735 PELL--SKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDST--GVTDRVVNQLLTELDGAEGLDGVYILAAT 810 (952)
T ss_pred HHHH--HHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCC--CchHHHHHHHHHhhccccccceEEEEEec
Confidence 7777 6889999999999999999999999999999999998766432 4567789999888864 358899999
Q ss_pred ChHHHHHHhhccHHHHh--ccc-cEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhcccccCcchhhHH
Q 003088 431 TQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAI 507 (849)
Q Consensus 431 ~~~~~~~~~~~d~al~~--Rf~-~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~~~r~~p~~ai 507 (849)
+.++ -+||||+| |++ .|+.+.|+..+|++||+.+....... ++-.++.++..+++|.. .+.-
T Consensus 811 sRpd-----liDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~-----~~vdl~~~a~~T~g~tg-----ADlq 875 (952)
T KOG0735|consen 811 SRPD-----LIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKD-----TDVDLECLAQKTDGFTG-----ADLQ 875 (952)
T ss_pred CCcc-----ccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCc-----cccchHHHhhhcCCCch-----hhHH
Confidence 9988 88999999 998 49999999999999999887643211 23346778888888754 4555
Q ss_pred HHHHHH
Q 003088 508 DLVDEA 513 (849)
Q Consensus 508 ~ll~~a 513 (849)
.++.+|
T Consensus 876 ~ll~~A 881 (952)
T KOG0735|consen 876 SLLYNA 881 (952)
T ss_pred HHHHHH
Confidence 666655
No 62
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.75 E-value=5.4e-18 Score=169.78 Aligned_cols=160 Identities=21% Similarity=0.350 Sum_probs=105.1
Q ss_pred HhccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeecccccccccccc
Q 003088 627 LKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSK 706 (849)
Q Consensus 627 l~~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~ 706 (849)
-.++++||++++..+...+..+... ..+..|++||||||+|||++|+.||+.+ +.+|...+.+.+..
T Consensus 22 ~L~efiGQ~~l~~~l~i~i~aa~~r----~~~l~h~lf~GPPG~GKTTLA~IIA~e~---~~~~~~~sg~~i~k------ 88 (233)
T PF05496_consen 22 SLDEFIGQEHLKGNLKILIRAAKKR----GEALDHMLFYGPPGLGKTTLARIIANEL---GVNFKITSGPAIEK------ 88 (233)
T ss_dssp SCCCS-S-HHHHHHHHHHHHHHHCT----TS---EEEEESSTTSSHHHHHHHHHHHC---T--EEEEECCC--S------
T ss_pred CHHHccCcHHHHhhhHHHHHHHHhc----CCCcceEEEECCCccchhHHHHHHHhcc---CCCeEeccchhhhh------
Confidence 3488999999999988777765432 2345689999999999999999999996 45566555543221
Q ss_pred ccCCCCCccccccCcchhHHHHh-CCCeEEEEeCccccCHHHHHHHHHHhhcCeeec--CCC---c--eeecCCeEEEEe
Q 003088 707 LIGSPPGYVGYEEGGLLTEAIRR-RPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTD--SHG---R--RVSFKNALIVMT 778 (849)
Q Consensus 707 l~g~~~g~vg~~~~~~l~~~i~~-~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~--~~g---~--~~~~~~~~iI~t 778 (849)
.+.+...+.. .++.|||||||+++++.+|+.|+.+||+|.+.. +.| + .+..+.+.+|.+
T Consensus 89 -------------~~dl~~il~~l~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligA 155 (233)
T PF05496_consen 89 -------------AGDLAAILTNLKEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGA 155 (233)
T ss_dssp -------------CHHHHHHHHT--TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEE
T ss_pred -------------HHHHHHHHHhcCCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeee
Confidence 1223333322 346799999999999999999999999999753 333 2 345568888887
Q ss_pred cCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHHHccccC
Q 003088 779 SNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQLPL 848 (849)
Q Consensus 779 sn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~I~~ 848 (849)
|+.. | .+.++|.+||..+..+..|+.+++.+|++
T Consensus 156 TTr~------------g------------------------~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~ 189 (233)
T PF05496_consen 156 TTRA------------G------------------------LLSSPLRDRFGIVLRLEFYSEEELAKIVK 189 (233)
T ss_dssp ESSG------------C------------------------CTSHCCCTTSSEEEE----THHHHHHHHH
T ss_pred eccc------------c------------------------ccchhHHhhcceecchhcCCHHHHHHHHH
Confidence 7752 1 17889999998888999999999999873
No 63
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.75 E-value=2.8e-17 Score=188.54 Aligned_cols=203 Identities=19% Similarity=0.201 Sum_probs=154.8
Q ss_pred hhhHHHHhhcCCCCccccHHHHHHHHHHHhcCCCCC-CeEeCCCCChHHHHHHHHHHHhhhCCCCc--ccc---------
Q 003088 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEVPV--FLL--------- 345 (849)
Q Consensus 278 ~~l~~~~~~~~l~~iiG~~~~i~~l~~~l~~~~~~n-iLL~GppGtGKT~la~~la~~l~~~~~p~--~~~--------- 345 (849)
..|.++|||..|+++||++..++.+...+..++..| +||+||+|||||++|+.+|+.+.+..... ...
T Consensus 4 ~~La~KyRP~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~ 83 (546)
T PRK14957 4 QALARKYRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAIN 83 (546)
T ss_pred hhHHHHHCcCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHh
Confidence 368999999999999999999999999998877767 68999999999999999999986532110 000
Q ss_pred ---CCeEEEeehhhhhccccccchHHHHHHHHHHHHH----hcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhh
Q 003088 346 ---SKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPS 418 (849)
Q Consensus 346 ---~~~~~~l~~~~~~~~~~~~g~~e~~l~~l~~~~~----~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~ 418 (849)
...++.++... ..| .+.++.+++.+. .++..|+||||+|.| +..+++.|+..
T Consensus 84 ~~~~~dlieidaas------~~g--vd~ir~ii~~~~~~p~~g~~kViIIDEa~~l-------------s~~a~naLLK~ 142 (546)
T PRK14957 84 NNSFIDLIEIDAAS------RTG--VEETKEILDNIQYMPSQGRYKVYLIDEVHML-------------SKQSFNALLKT 142 (546)
T ss_pred cCCCCceEEeeccc------ccC--HHHHHHHHHHHHhhhhcCCcEEEEEechhhc-------------cHHHHHHHHHH
Confidence 11334443211 111 112344444443 245679999999999 45678999999
Q ss_pred hcC--CCeEEEEccChHHHHHHhhccHHHHhccccEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhcc
Q 003088 419 LGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496 (849)
Q Consensus 419 le~--~~i~vI~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~ 496 (849)
||+ +.+.+|++|+... .+.+.+++||..++|.+++.++..+.|..++. ..++.++++++..++..+++-
T Consensus 143 LEepp~~v~fIL~Ttd~~-----kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~----~egi~~e~~Al~~Ia~~s~Gd 213 (546)
T PRK14957 143 LEEPPEYVKFILATTDYH-----KIPVTILSRCIQLHLKHISQADIKDQLKIILA----KENINSDEQSLEYIAYHAKGS 213 (546)
T ss_pred HhcCCCCceEEEEECChh-----hhhhhHHHheeeEEeCCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHcCCC
Confidence 997 4678888887643 56678999999999999999999999988877 467899999999999999875
Q ss_pred cccCcchhhHHHHHHHHhhH
Q 003088 497 ISDRYLPDKAIDLVDEAGSR 516 (849)
Q Consensus 497 ~~~r~~p~~ai~ll~~a~~~ 516 (849)
+ .+++.+++.++..
T Consensus 214 l------R~alnlLek~i~~ 227 (546)
T PRK14957 214 L------RDALSLLDQAISF 227 (546)
T ss_pred H------HHHHHHHHHHHHh
Confidence 4 4788888887754
No 64
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.75 E-value=3.1e-17 Score=182.75 Aligned_cols=203 Identities=21% Similarity=0.176 Sum_probs=152.2
Q ss_pred hhhHHHHhhcCCCCccccHHHHHHHHHHHhcCCCCCC-eEeCCCCChHHHHHHHHHHHhhhCCCCc--ccc---------
Q 003088 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP-ILLGESGVGKTAIAEGLAIRIVQAEVPV--FLL--------- 345 (849)
Q Consensus 278 ~~l~~~~~~~~l~~iiG~~~~i~~l~~~l~~~~~~ni-LL~GppGtGKT~la~~la~~l~~~~~p~--~~~--------- 345 (849)
..|.++|||..|+++||++..++.+...+...+.+|. ||+||+|+|||++|+.+|+.+.+..... ...
T Consensus 4 ~~l~~kyrP~~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~ 83 (363)
T PRK14961 4 QILARKWRPQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIE 83 (363)
T ss_pred HHHHHHhCCCchhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHh
Confidence 4689999999999999999999999999888777775 8999999999999999999986422110 000
Q ss_pred ---CCeEEEeehhhhhccccccchHHHHHHHHHHHHHh----cCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhh
Q 003088 346 ---SKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPS 418 (849)
Q Consensus 346 ---~~~~~~l~~~~~~~~~~~~g~~e~~l~~l~~~~~~----~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~ 418 (849)
...++.++... .. ..+.++.+++.+.. ++..|+||||+|.+ +..+++.|+..
T Consensus 84 ~~~~~d~~~~~~~~-------~~-~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l-------------~~~a~naLLk~ 142 (363)
T PRK14961 84 KGLCLDLIEIDAAS-------RT-KVEEMREILDNIYYSPSKSRFKVYLIDEVHML-------------SRHSFNALLKT 142 (363)
T ss_pred cCCCCceEEecccc-------cC-CHHHHHHHHHHHhcCcccCCceEEEEEChhhc-------------CHHHHHHHHHH
Confidence 11233332211 01 11235555555432 33569999999999 34567788888
Q ss_pred hcC--CCeEEEEccChHHHHHHhhccHHHHhccccEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhcc
Q 003088 419 LGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496 (849)
Q Consensus 419 le~--~~i~vI~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~ 496 (849)
++. +.+.+|++|+..+ .+.+++++||..++|++|+.++..++|+..++ ..++.++++++..++..+++-
T Consensus 143 lEe~~~~~~fIl~t~~~~-----~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~----~~g~~i~~~al~~ia~~s~G~ 213 (363)
T PRK14961 143 LEEPPQHIKFILATTDVE-----KIPKTILSRCLQFKLKIISEEKIFNFLKYILI----KESIDTDEYALKLIAYHAHGS 213 (363)
T ss_pred HhcCCCCeEEEEEcCChH-----hhhHHHHhhceEEeCCCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHcCCC
Confidence 885 5677888777654 57789999999999999999999999988877 457889999999999988764
Q ss_pred cccCcchhhHHHHHHHHhhH
Q 003088 497 ISDRYLPDKAIDLVDEAGSR 516 (849)
Q Consensus 497 ~~~r~~p~~ai~ll~~a~~~ 516 (849)
+.+++.+++.++..
T Consensus 214 ------~R~al~~l~~~~~~ 227 (363)
T PRK14961 214 ------MRDALNLLEHAINL 227 (363)
T ss_pred ------HHHHHHHHHHHHHh
Confidence 35788888887643
No 65
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.75 E-value=2.1e-17 Score=191.85 Aligned_cols=202 Identities=19% Similarity=0.203 Sum_probs=155.4
Q ss_pred hhHHHHhhcCCCCccccHHHHHHHHHHHhcCCCCCC-eEeCCCCChHHHHHHHHHHHhhhCCCCc-------cc------
Q 003088 279 DLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP-ILLGESGVGKTAIAEGLAIRIVQAEVPV-------FL------ 344 (849)
Q Consensus 279 ~l~~~~~~~~l~~iiG~~~~i~~l~~~l~~~~~~ni-LL~GppGtGKT~la~~la~~l~~~~~p~-------~~------ 344 (849)
.|.++|||.+|+++||++..++.|..++...+..|. ||+||+|||||++|+.+|+.+++..... ..
T Consensus 5 vla~KyRP~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C 84 (618)
T PRK14951 5 VLARKYRPRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQAC 84 (618)
T ss_pred HHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHH
Confidence 588999999999999999999999999988888776 9999999999999999999997632110 00
Q ss_pred ------cCCeEEEeehhhhhccccccchHHHHHHHHHHHHHh----cCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHH
Q 003088 345 ------LSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNL 414 (849)
Q Consensus 345 ------~~~~~~~l~~~~~~~~~~~~g~~e~~l~~l~~~~~~----~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~ 414 (849)
....++++|..+ .++ .+.++++++.+.. ++..|+||||+|.| +.+.+|.
T Consensus 85 ~~i~~g~h~D~~eldaas------~~~--Vd~iReli~~~~~~p~~g~~KV~IIDEvh~L-------------s~~a~Na 143 (618)
T PRK14951 85 RDIDSGRFVDYTELDAAS------NRG--VDEVQQLLEQAVYKPVQGRFKVFMIDEVHML-------------TNTAFNA 143 (618)
T ss_pred HHHHcCCCCceeecCccc------ccC--HHHHHHHHHHHHhCcccCCceEEEEEChhhC-------------CHHHHHH
Confidence 011233333211 111 2234555555432 34579999999999 4567889
Q ss_pred HhhhhcC--CCeEEEEccChHHHHHHhhccHHHHhccccEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHh
Q 003088 415 LKPSLGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHL 492 (849)
Q Consensus 415 L~~~le~--~~i~vI~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~l 492 (849)
|+..||. +.+.+|++|+... .+.+.+++||..+.|..++.++..+.|+.++. ..++.++++++..++..
T Consensus 144 LLKtLEEPP~~~~fIL~Ttd~~-----kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~----~egi~ie~~AL~~La~~ 214 (618)
T PRK14951 144 MLKTLEEPPEYLKFVLATTDPQ-----KVPVTVLSRCLQFNLRPMAPETVLEHLTQVLA----AENVPAEPQALRLLARA 214 (618)
T ss_pred HHHhcccCCCCeEEEEEECCch-----hhhHHHHHhceeeecCCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHH
Confidence 9999986 5678888887665 56678999999999999999999999988776 66899999999999998
Q ss_pred hhcccccCcchhhHHHHHHHHhhH
Q 003088 493 SARYISDRYLPDKAIDLVDEAGSR 516 (849)
Q Consensus 493 s~~~~~~r~~p~~ai~ll~~a~~~ 516 (849)
+++-+ .+++++++.++..
T Consensus 215 s~Gsl------R~al~lLdq~ia~ 232 (618)
T PRK14951 215 ARGSM------RDALSLTDQAIAF 232 (618)
T ss_pred cCCCH------HHHHHHHHHHHHh
Confidence 88754 4778888877654
No 66
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.75 E-value=2.7e-17 Score=197.34 Aligned_cols=202 Identities=18% Similarity=0.145 Sum_probs=154.3
Q ss_pred hhhHHHHhhcCCCCccccHHHHHHHHHHHhcCCCCC-CeEeCCCCChHHHHHHHHHHHhhhCCCCcc--c----------
Q 003088 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEVPVF--L---------- 344 (849)
Q Consensus 278 ~~l~~~~~~~~l~~iiG~~~~i~~l~~~l~~~~~~n-iLL~GppGtGKT~la~~la~~l~~~~~p~~--~---------- 344 (849)
..|.++|||.+|++|||++..++.|...+...+.+| +||+||+|||||++|+.||+.+.+...+.. +
T Consensus 3 ~~l~~KyRP~~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~ 82 (824)
T PRK07764 3 LALYRRYRPATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALA 82 (824)
T ss_pred hhHHHHhCCCCHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHH
Confidence 357899999999999999999999999998888888 589999999999999999999976432211 1
Q ss_pred ----cCCeEEEeehhhhhccccccchHHHHHHHHHHHHH----hcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHh
Q 003088 345 ----LSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLK 416 (849)
Q Consensus 345 ----~~~~~~~l~~~~~~~~~~~~g~~e~~l~~l~~~~~----~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~ 416 (849)
.+..++.+|.... ...++ ++.+.+.+. .++..|+||||+|.| +.+.+|.|+
T Consensus 83 ~g~~~~~dv~eidaas~----~~Vd~----iR~l~~~~~~~p~~~~~KV~IIDEad~l-------------t~~a~NaLL 141 (824)
T PRK07764 83 PGGPGSLDVTEIDAASH----GGVDD----ARELRERAFFAPAESRYKIFIIDEAHMV-------------TPQGFNALL 141 (824)
T ss_pred cCCCCCCcEEEeccccc----CCHHH----HHHHHHHHHhchhcCCceEEEEechhhc-------------CHHHHHHHH
Confidence 1123344432111 11122 333333332 245679999999999 467899999
Q ss_pred hhhcC--CCeEEEEccChHHHHHHhhccHHHHhccccEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhh
Q 003088 417 PSLGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSA 494 (849)
Q Consensus 417 ~~le~--~~i~vI~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~ 494 (849)
++||+ ..++||++|+..+ .+.+.|++||+.+.|..++.++..++|..+++ ..++.++++++..++..+.
T Consensus 142 K~LEEpP~~~~fIl~tt~~~-----kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~----~EGv~id~eal~lLa~~sg 212 (824)
T PRK07764 142 KIVEEPPEHLKFIFATTEPD-----KVIGTIRSRTHHYPFRLVPPEVMRGYLERICA----QEGVPVEPGVLPLVIRAGG 212 (824)
T ss_pred HHHhCCCCCeEEEEEeCChh-----hhhHHHHhheeEEEeeCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHcC
Confidence 99996 6788888887765 56789999999999999999999999988776 6689999999999999887
Q ss_pred cccccCcchhhHHHHHHHHhh
Q 003088 495 RYISDRYLPDKAIDLVDEAGS 515 (849)
Q Consensus 495 ~~~~~r~~p~~ai~ll~~a~~ 515 (849)
+.+ ..++.+++..+.
T Consensus 213 Gdl------R~Al~eLEKLia 227 (824)
T PRK07764 213 GSV------RDSLSVLDQLLA 227 (824)
T ss_pred CCH------HHHHHHHHHHHh
Confidence 644 366777777654
No 67
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.75 E-value=9.9e-17 Score=172.20 Aligned_cols=212 Identities=19% Similarity=0.213 Sum_probs=150.0
Q ss_pred CccccHHHHHHHHHHHhc---------------CCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehh
Q 003088 291 PVIGRETEIQRIIQILCR---------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMG 355 (849)
Q Consensus 291 ~iiG~~~~i~~l~~~l~~---------------~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~ 355 (849)
.++|.++..+++.++... ....|++|+||||||||++|+++|+.+...+.. ....++.++..
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~---~~~~~v~v~~~ 99 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYV---RKGHLVSVTRD 99 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCc---ccceEEEecHH
Confidence 589999888877664310 123479999999999999999999998653321 13357777766
Q ss_pred hhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcC--CCeEEEEccChH
Q 003088 356 LLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--GELQCIASTTQD 433 (849)
Q Consensus 356 ~~~~~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~--~~i~vI~at~~~ 433 (849)
.+.. .+.|+.+..++.+++.+. ++||||||+|.|.+.+.. .+.+.++++.|...++. +++++|++++.+
T Consensus 100 ~l~~--~~~g~~~~~~~~~~~~a~---~gvL~iDEi~~L~~~~~~----~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~ 170 (284)
T TIGR02880 100 DLVG--QYIGHTAPKTKEILKRAM---GGVLFIDEAYYLYRPDNE----RDYGQEAIEILLQVMENQRDDLVVILAGYKD 170 (284)
T ss_pred HHhH--hhcccchHHHHHHHHHcc---CcEEEEechhhhccCCCc----cchHHHHHHHHHHHHhcCCCCEEEEEeCCcH
Confidence 6653 345666666777766653 469999999999543211 12356778888888874 478999999987
Q ss_pred HHHHHhhccHHHHhccc-cEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhcccccCc--chhhHHHHH
Q 003088 434 EHRTQFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRY--LPDKAIDLV 510 (849)
Q Consensus 434 ~~~~~~~~d~al~~Rf~-~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~~~r~--~p~~ai~ll 510 (849)
....++.++|+|.+||. .|.|++++.+|+.+|+..++++ .+..++++++..+..+......... .-..+..++
T Consensus 171 ~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~----~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~v 246 (284)
T TIGR02880 171 RMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKE----QQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAI 246 (284)
T ss_pred HHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHH----hccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 77778888999999997 7999999999999999988874 3567888888877665442221111 123455666
Q ss_pred HHHhhHHH
Q 003088 511 DEAGSRAH 518 (849)
Q Consensus 511 ~~a~~~~~ 518 (849)
+.+..+..
T Consensus 247 e~~~~~~~ 254 (284)
T TIGR02880 247 DRARLRQA 254 (284)
T ss_pred HHHHHHHH
Confidence 66655443
No 68
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.75 E-value=8.8e-17 Score=163.44 Aligned_cols=192 Identities=20% Similarity=0.286 Sum_probs=142.0
Q ss_pred hhHHHHhhcCCCCccccHHHHHHHHHHHhcC-----CCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEee
Q 003088 279 DLTARASEELIDPVIGRETEIQRIIQILCRR-----TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD 353 (849)
Q Consensus 279 ~l~~~~~~~~l~~iiG~~~~i~~l~~~l~~~-----~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~ 353 (849)
+.....||+.|+++||+++..+.+.-++... ...|+||+||||.||||+|..+|+++ +..+....
T Consensus 15 ~~e~~lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Em----------gvn~k~ts 84 (332)
T COG2255 15 KIERSLRPKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANEL----------GVNLKITS 84 (332)
T ss_pred hhhcccCcccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHh----------cCCeEecc
Confidence 3445678999999999999888877666332 24689999999999999999999999 33222221
Q ss_pred hhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcC------------
Q 003088 354 MGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR------------ 421 (849)
Q Consensus 354 ~~~~~~~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~------------ 421 (849)
+..+.. .|+ +-.++..++. +.||||||||.+ +..+-++|-+.||.
T Consensus 85 -Gp~leK---~gD----laaiLt~Le~--~DVLFIDEIHrl-------------~~~vEE~LYpaMEDf~lDI~IG~gp~ 141 (332)
T COG2255 85 -GPALEK---PGD----LAAILTNLEE--GDVLFIDEIHRL-------------SPAVEEVLYPAMEDFRLDIIIGKGPA 141 (332)
T ss_pred -cccccC---hhh----HHHHHhcCCc--CCeEEEehhhhc-------------ChhHHHHhhhhhhheeEEEEEccCCc
Confidence 111111 123 3333333333 459999999999 34566788888863
Q ss_pred --------CCeEEEEccChHHHHHHhhccHHHHhccc-cEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHh
Q 003088 422 --------GELQCIASTTQDEHRTQFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHL 492 (849)
Q Consensus 422 --------~~i~vI~at~~~~~~~~~~~d~al~~Rf~-~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~l 492 (849)
..+.+|||||... .+...|+.||. ...+..++.+|..+|+..-.. ..++.+++++...+++.
T Consensus 142 Arsv~ldLppFTLIGATTr~G-----~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~----~l~i~i~~~~a~eIA~r 212 (332)
T COG2255 142 ARSIRLDLPPFTLIGATTRAG-----MLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAK----ILGIEIDEEAALEIARR 212 (332)
T ss_pred cceEeccCCCeeEeeeccccc-----cccchhHHhcCCeeeeecCCHHHHHHHHHHHHH----HhCCCCChHHHHHHHHh
Confidence 3468999999987 78889999997 689999999999999977665 66889999998888887
Q ss_pred hhcccccCcchhhHHHHHHHHhhHHH
Q 003088 493 SARYISDRYLPDKAIDLVDEAGSRAH 518 (849)
Q Consensus 493 s~~~~~~r~~p~~ai~ll~~a~~~~~ 518 (849)
+.+ .|.-|..++..+-..+.
T Consensus 213 SRG------TPRIAnRLLrRVRDfa~ 232 (332)
T COG2255 213 SRG------TPRIANRLLRRVRDFAQ 232 (332)
T ss_pred ccC------CcHHHHHHHHHHHHHHH
Confidence 654 57788888777655443
No 69
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.74 E-value=1.9e-17 Score=185.66 Aligned_cols=203 Identities=23% Similarity=0.282 Sum_probs=148.9
Q ss_pred hhcCCCCccccHHHHHHHHHHHhc-------------CCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEE
Q 003088 285 SEELIDPVIGRETEIQRIIQILCR-------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMS 351 (849)
Q Consensus 285 ~~~~l~~iiG~~~~i~~l~~~l~~-------------~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~ 351 (849)
.+.+++++.|.+++++.+.+++.. ..+.++||+||||||||++|+++|.++ +..++.
T Consensus 178 p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el----------~~~fi~ 247 (438)
T PTZ00361 178 PLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANET----------SATFLR 247 (438)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhh----------CCCEEE
Confidence 345688999999999988886631 245679999999999999999999987 445666
Q ss_pred eehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhh-------cCCCe
Q 003088 352 LDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL-------GRGEL 424 (849)
Q Consensus 352 l~~~~~~~~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~l-------e~~~i 424 (849)
+..+.+. .++.|+.+..++.+|..+....++||||||+|.+......... ++..+++..+..++ ...++
T Consensus 248 V~~seL~--~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~s--gg~~e~qr~ll~LL~~Ldg~~~~~~V 323 (438)
T PTZ00361 248 VVGSELI--QKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATS--GGEKEIQRTMLELLNQLDGFDSRGDV 323 (438)
T ss_pred Eecchhh--hhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCC--cccHHHHHHHHHHHHHHhhhcccCCe
Confidence 6555554 3567888888999999998888999999999999865432111 23344444443333 24678
Q ss_pred EEEEccChHHHHHHhhccHHHHh--ccc-cEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHH-HHHHHHHhhhcccccC
Q 003088 425 QCIASTTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLE-AINAAVHLSARYISDR 500 (849)
Q Consensus 425 ~vI~at~~~~~~~~~~~d~al~~--Rf~-~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~-~l~~~a~ls~~~~~~r 500 (849)
.||+|||..+ .+|+++.| ||+ .|+|+.|+.++|.+||+....++ .+.++ .+..++..+.+|.
T Consensus 324 ~VI~ATNr~d-----~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~------~l~~dvdl~~la~~t~g~s--- 389 (438)
T PTZ00361 324 KVIMATNRIE-----SLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKM------TLAEDVDLEEFIMAKDELS--- 389 (438)
T ss_pred EEEEecCChH-----HhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcC------CCCcCcCHHHHHHhcCCCC---
Confidence 9999999877 78999987 997 69999999999999998766533 23222 3455666666654
Q ss_pred cchhhHHHHHHHHhhHH
Q 003088 501 YLPDKAIDLVDEAGSRA 517 (849)
Q Consensus 501 ~~p~~ai~ll~~a~~~~ 517 (849)
+.+...++.+|+..+
T Consensus 390 --gAdI~~i~~eA~~~A 404 (438)
T PTZ00361 390 --GADIKAICTEAGLLA 404 (438)
T ss_pred --HHHHHHHHHHHHHHH
Confidence 456667777776654
No 70
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=4.6e-17 Score=189.52 Aligned_cols=204 Identities=24% Similarity=0.329 Sum_probs=156.8
Q ss_pred cCCCCccccHHHHHHHHHHH----------h---cCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEee
Q 003088 287 ELIDPVIGRETEIQRIIQIL----------C---RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD 353 (849)
Q Consensus 287 ~~l~~iiG~~~~i~~l~~~l----------~---~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~ 353 (849)
..++++.|.++....+.+.+ . .+....+||+||||||||++|+++|.++ +.+++.++
T Consensus 239 v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~----------~~~fi~v~ 308 (494)
T COG0464 239 VTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALES----------RSRFISVK 308 (494)
T ss_pred cceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhC----------CCeEEEee
Confidence 34667777776666665543 1 2344578999999999999999999987 88999999
Q ss_pred hhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhc----CCCeEEEEc
Q 003088 354 MGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG----RGELQCIAS 429 (849)
Q Consensus 354 ~~~~~~~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le----~~~i~vI~a 429 (849)
.+.++ .++.|+.+..++.+|..++...|+||||||+|.+++..+.+.+ +....+.+.|+..+. ...+.+|+|
T Consensus 309 ~~~l~--sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~--~~~~r~~~~lL~~~d~~e~~~~v~vi~a 384 (494)
T COG0464 309 GSELL--SKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSED--GSGRRVVGQLLTELDGIEKAEGVLVIAA 384 (494)
T ss_pred CHHHh--ccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCc--hHHHHHHHHHHHHhcCCCccCceEEEec
Confidence 88666 6789999999999999999999999999999999886654211 122466766666663 356889999
Q ss_pred cChHHHHHHhhccHHHHh--ccc-cEEecCCCHHHHHHHHHHHHHHHHhhcCCc-cCHHHHHHHHHhhhcccccCcchhh
Q 003088 430 TTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCK-FTLEAINAAVHLSARYISDRYLPDK 505 (849)
Q Consensus 430 t~~~~~~~~~~~d~al~~--Rf~-~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~-i~~~~l~~~a~ls~~~~~~r~~p~~ 505 (849)
||... .+|+++.| ||+ .++|+.|+.++|.+|++....+. +.. ..+-.+..+++.+.+| ...+
T Consensus 385 TN~p~-----~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~----~~~~~~~~~~~~l~~~t~~~-----sgad 450 (494)
T COG0464 385 TNRPD-----DLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDK----KPPLAEDVDLEELAEITEGY-----SGAD 450 (494)
T ss_pred CCCcc-----ccCHhhcccCccceEeecCCCCHHHHHHHHHHHhccc----CCcchhhhhHHHHHHHhcCC-----CHHH
Confidence 99997 89999999 998 69999999999999998877622 222 2344566777766664 4567
Q ss_pred HHHHHHHHhhHHH
Q 003088 506 AIDLVDEAGSRAH 518 (849)
Q Consensus 506 ai~ll~~a~~~~~ 518 (849)
...++.+|+....
T Consensus 451 i~~i~~ea~~~~~ 463 (494)
T COG0464 451 IAALVREAALEAL 463 (494)
T ss_pred HHHHHHHHHHHHH
Confidence 7788888766554
No 71
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=6.8e-17 Score=160.23 Aligned_cols=201 Identities=20% Similarity=0.253 Sum_probs=152.2
Q ss_pred CCCccccHHHHHHHHHHHh-------------cCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehh
Q 003088 289 IDPVIGRETEIQRIIQILC-------------RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMG 355 (849)
Q Consensus 289 l~~iiG~~~~i~~l~~~l~-------------~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~ 355 (849)
.+-+-|.+.+++.+.+++. ...+..+|||||||+|||.+|+++|... +|.++.+.-+
T Consensus 146 YeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht----------~c~firvsgs 215 (404)
T KOG0728|consen 146 YEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT----------DCTFIRVSGS 215 (404)
T ss_pred HHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc----------ceEEEEechH
Confidence 3345567777777777552 2345789999999999999999999877 8899998888
Q ss_pred hhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhc-------CCCeEEEE
Q 003088 356 LLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG-------RGELQCIA 428 (849)
Q Consensus 356 ~~~~~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le-------~~~i~vI~ 428 (849)
.+. .++.|+-...++++|-.+++..|+|+|+||||.+-.++.. ++++++.+++..++.+|. ..++.+|.
T Consensus 216 elv--qk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e--~~~ggdsevqrtmlellnqldgfeatknikvim 291 (404)
T KOG0728|consen 216 ELV--QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVE--SGSGGDSEVQRTMLELLNQLDGFEATKNIKVIM 291 (404)
T ss_pred HHH--HHHhhhhHHHHHHHHHHHHhcCCceEeeeccccccccccc--CCCCccHHHHHHHHHHHHhccccccccceEEEE
Confidence 777 6788999999999999999999999999999999554433 233567777777766663 57799999
Q ss_pred ccChHHHHHHhhccHHHHh--ccc-cEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhcccccCcchhh
Q 003088 429 STTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDK 505 (849)
Q Consensus 429 at~~~~~~~~~~~d~al~~--Rf~-~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~~~r~~p~~ 505 (849)
+||..+ -+||+|.| |++ +|+||+|+++.|.+||+-...++....++++ ..++..-.+ .-...
T Consensus 292 atnrid-----ild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l-----~kiaekm~g-----asgae 356 (404)
T KOG0728|consen 292 ATNRID-----ILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINL-----RKIAEKMPG-----ASGAE 356 (404)
T ss_pred eccccc-----cccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCH-----HHHHHhCCC-----Cccch
Confidence 999987 78999999 887 6999999999999999887766655555542 223322222 12234
Q ss_pred HHHHHHHHhhHHH
Q 003088 506 AIDLVDEAGSRAH 518 (849)
Q Consensus 506 ai~ll~~a~~~~~ 518 (849)
...++.+|+..+-
T Consensus 357 vk~vcteagm~al 369 (404)
T KOG0728|consen 357 VKGVCTEAGMYAL 369 (404)
T ss_pred hhhhhhhhhHHHH
Confidence 5566777766553
No 72
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.73 E-value=7e-17 Score=184.30 Aligned_cols=204 Identities=20% Similarity=0.226 Sum_probs=156.7
Q ss_pred hhhHHHHhhcCCCCccccHHHHHHHHHHHhcCC-CCCCeEeCCCCChHHHHHHHHHHHhhhCCC----Cc--c-------
Q 003088 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRT-KNNPILLGESGVGKTAIAEGLAIRIVQAEV----PV--F------- 343 (849)
Q Consensus 278 ~~l~~~~~~~~l~~iiG~~~~i~~l~~~l~~~~-~~niLL~GppGtGKT~la~~la~~l~~~~~----p~--~------- 343 (849)
.+|.++|||.+|+++||++..++.+...+...+ ..++||+||+|||||++|+.+|+.+.+... +. .
T Consensus 9 ~~la~kyRP~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C 88 (507)
T PRK06645 9 IPFARKYRPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNC 88 (507)
T ss_pred cchhhhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHH
Confidence 578999999999999999999999988776654 357899999999999999999999975321 00 0
Q ss_pred -----ccCCeEEEeehhhhhccccccchHHHHHHHHHHHHHh----cCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHH
Q 003088 344 -----LLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNL 414 (849)
Q Consensus 344 -----~~~~~~~~l~~~~~~~~~~~~g~~e~~l~~l~~~~~~----~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~ 414 (849)
.....++++|..+ .. ..+.++.+++.+.. +...|+||||+|.| +..+++.
T Consensus 89 ~~i~~~~h~Dv~eidaas------~~--~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~L-------------s~~a~na 147 (507)
T PRK06645 89 ISFNNHNHPDIIEIDAAS------KT--SVDDIRRIIESAEYKPLQGKHKIFIIDEVHML-------------SKGAFNA 147 (507)
T ss_pred HHHhcCCCCcEEEeeccC------CC--CHHHHHHHHHHHHhccccCCcEEEEEEChhhc-------------CHHHHHH
Confidence 0012344443321 11 12345666666543 34679999999999 3466888
Q ss_pred HhhhhcC--CCeEEEEccChHHHHHHhhccHHHHhccccEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHh
Q 003088 415 LKPSLGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHL 492 (849)
Q Consensus 415 L~~~le~--~~i~vI~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~l 492 (849)
|+..+++ +.+++|++|+... .+.+++++||+.++|.+++.++...+++.+++ ..++.++++++..++..
T Consensus 148 LLk~LEepp~~~vfI~aTte~~-----kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~----~egi~ie~eAL~~Ia~~ 218 (507)
T PRK06645 148 LLKTLEEPPPHIIFIFATTEVQ-----KIPATIISRCQRYDLRRLSFEEIFKLLEYITK----QENLKTDIEALRIIAYK 218 (507)
T ss_pred HHHHHhhcCCCEEEEEEeCChH-----HhhHHHHhcceEEEccCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHH
Confidence 8888886 5678888887665 57789999999999999999999999998887 66899999999999998
Q ss_pred hhcccccCcchhhHHHHHHHHhhHH
Q 003088 493 SARYISDRYLPDKAIDLVDEAGSRA 517 (849)
Q Consensus 493 s~~~~~~r~~p~~ai~ll~~a~~~~ 517 (849)
+++.. .+++++++.++...
T Consensus 219 s~Gsl------R~al~~Ldkai~~~ 237 (507)
T PRK06645 219 SEGSA------RDAVSILDQAASMS 237 (507)
T ss_pred cCCCH------HHHHHHHHHHHHhh
Confidence 88654 58889999886653
No 73
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=3.7e-17 Score=172.34 Aligned_cols=196 Identities=21% Similarity=0.313 Sum_probs=154.1
Q ss_pred CCCCccccHHHHHHHHHHH---------h-----cCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEee
Q 003088 288 LIDPVIGRETEIQRIIQIL---------C-----RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD 353 (849)
Q Consensus 288 ~l~~iiG~~~~i~~l~~~l---------~-----~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~ 353 (849)
+++++-|.+.+++.+.+.+ . -+...++||+||||||||.+|+++|++. ++.++.+.
T Consensus 90 ~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akea----------ga~fInv~ 159 (386)
T KOG0737|consen 90 SFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEA----------GANFINVS 159 (386)
T ss_pred ehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHc----------CCCcceee
Confidence 5778889998888877743 1 1245789999999999999999999998 78888888
Q ss_pred hhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhh-hh-------c--CCC
Q 003088 354 MGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKP-SL-------G--RGE 423 (849)
Q Consensus 354 ~~~~~~~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~-~l-------e--~~~ 423 (849)
++.+.. ++-|+.++.++.+|--+.+-.|+|+||||++.+...+.. +..++...++. ++ . +..
T Consensus 160 ~s~lt~--KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s------~dHEa~a~mK~eFM~~WDGl~s~~~~r 231 (386)
T KOG0737|consen 160 VSNLTS--KWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRS------TDHEATAMMKNEFMALWDGLSSKDSER 231 (386)
T ss_pred ccccch--hhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhccc------chHHHHHHHHHHHHHHhccccCCCCce
Confidence 888774 788999999999999999999999999999999987632 35666655543 22 1 235
Q ss_pred eEEEEccChHHHHHHhhccHHHHhccc-cEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhcccccCcc
Q 003088 424 LQCIASTTQDEHRTQFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYL 502 (849)
Q Consensus 424 i~vI~at~~~~~~~~~~~d~al~~Rf~-~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~~~r~~ 502 (849)
+.|+||||.+. .+|.++.||+. ++.|+.|+.++|.+||+-+++ ..++. ++-.+..++..+++|..
T Consensus 232 VlVlgATNRP~-----DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk----~e~~e-~~vD~~~iA~~t~GySG---- 297 (386)
T KOG0737|consen 232 VLVLGATNRPF-----DLDEAIIRRLPRRFHVGLPDAEQRRKILKVILK----KEKLE-DDVDLDEIAQMTEGYSG---- 297 (386)
T ss_pred EEEEeCCCCCc-----cHHHHHHHhCcceeeeCCCchhhHHHHHHHHhc----ccccC-cccCHHHHHHhcCCCcH----
Confidence 89999999986 99999999996 799999999999999998876 33332 23346778899999865
Q ss_pred hhhHHHHHHHHhhH
Q 003088 503 PDKAIDLVDEAGSR 516 (849)
Q Consensus 503 p~~ai~ll~~a~~~ 516 (849)
.+...++..|+..
T Consensus 298 -SDLkelC~~Aa~~ 310 (386)
T KOG0737|consen 298 -SDLKELCRLAALR 310 (386)
T ss_pred -HHHHHHHHHHhHh
Confidence 3455555555443
No 74
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.73 E-value=5.1e-17 Score=187.73 Aligned_cols=202 Identities=18% Similarity=0.218 Sum_probs=155.2
Q ss_pred hhHHHHhhcCCCCccccHHHHHHHHHHHhcCCCCC-CeEeCCCCChHHHHHHHHHHHhhhCCCCcc--cc----------
Q 003088 279 DLTARASEELIDPVIGRETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEVPVF--LL---------- 345 (849)
Q Consensus 279 ~l~~~~~~~~l~~iiG~~~~i~~l~~~l~~~~~~n-iLL~GppGtGKT~la~~la~~l~~~~~p~~--~~---------- 345 (849)
.|.++|||++|+++||++..++.|...+..++..| +||+||+|||||++|+.+|+.+.+...... ..
T Consensus 5 vLarKYRP~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~ 84 (709)
T PRK08691 5 VLARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDA 84 (709)
T ss_pred hHHHHhCCCCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhc
Confidence 58899999999999999999999999988776655 699999999999999999999875432110 00
Q ss_pred --CCeEEEeehhhhhccccccchHHHHHHHHHHHHH----hcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhh
Q 003088 346 --SKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL 419 (849)
Q Consensus 346 --~~~~~~l~~~~~~~~~~~~g~~e~~l~~l~~~~~----~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~l 419 (849)
...+++++..+ ..+ .+.++.+++.+. .++..|+||||+|.| +..+++.|+..|
T Consensus 85 g~~~DvlEidaAs------~~g--Vd~IRelle~a~~~P~~gk~KVIIIDEad~L-------------s~~A~NALLKtL 143 (709)
T PRK08691 85 GRYVDLLEIDAAS------NTG--IDNIREVLENAQYAPTAGKYKVYIIDEVHML-------------SKSAFNAMLKTL 143 (709)
T ss_pred cCccceEEEeccc------cCC--HHHHHHHHHHHHhhhhhCCcEEEEEECcccc-------------CHHHHHHHHHHH
Confidence 01233333211 111 234555555443 244579999999998 345678888889
Q ss_pred cC--CCeEEEEccChHHHHHHhhccHHHHhccccEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhccc
Q 003088 420 GR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497 (849)
Q Consensus 420 e~--~~i~vI~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~ 497 (849)
+. +.+.+|++|+... .+.+.+++||..+.|..++.++....|..+++ ..++.++++++..+++.+.+-+
T Consensus 144 EEPp~~v~fILaTtd~~-----kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~----kEgi~id~eAL~~Ia~~A~Gsl 214 (709)
T PRK08691 144 EEPPEHVKFILATTDPH-----KVPVTVLSRCLQFVLRNMTAQQVADHLAHVLD----SEKIAYEPPALQLLGRAAAGSM 214 (709)
T ss_pred HhCCCCcEEEEEeCCcc-----ccchHHHHHHhhhhcCCCCHHHHHHHHHHHHH----HcCCCcCHHHHHHHHHHhCCCH
Confidence 85 5688888888765 67788999999999999999999999988877 6789999999999999988754
Q ss_pred ccCcchhhHHHHHHHHhhH
Q 003088 498 SDRYLPDKAIDLVDEAGSR 516 (849)
Q Consensus 498 ~~r~~p~~ai~ll~~a~~~ 516 (849)
.+++.+++.++..
T Consensus 215 ------RdAlnLLDqaia~ 227 (709)
T PRK08691 215 ------RDALSLLDQAIAL 227 (709)
T ss_pred ------HHHHHHHHHHHHh
Confidence 4788888887764
No 75
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.73 E-value=3.1e-17 Score=186.21 Aligned_cols=179 Identities=20% Similarity=0.286 Sum_probs=130.4
Q ss_pred hhcCCCCccccHHHHHHHHHHHh-------------cCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEE
Q 003088 285 SEELIDPVIGRETEIQRIIQILC-------------RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMS 351 (849)
Q Consensus 285 ~~~~l~~iiG~~~~i~~l~~~l~-------------~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~ 351 (849)
.+.+++++.|.+++++.+.+.+. ...++++|||||||||||++|+++|+.+...-.........++.
T Consensus 177 p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~ 256 (512)
T TIGR03689 177 PDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLN 256 (512)
T ss_pred CCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEe
Confidence 44578899999999998887652 13457899999999999999999999985321110001122333
Q ss_pred eehhhhhccccccchHHHHHHHHHHHHHh----cCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhc----CCC
Q 003088 352 LDMGLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG----RGE 423 (849)
Q Consensus 352 l~~~~~~~~~~~~g~~e~~l~~l~~~~~~----~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le----~~~ 423 (849)
+....+. .++.|+.+..++.+|+.++. +.++||||||+|.++..++.+.+ ++....+.+.|+..++ .++
T Consensus 257 v~~~eLl--~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s-~d~e~~il~~LL~~LDgl~~~~~ 333 (512)
T TIGR03689 257 IKGPELL--NKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVS-SDVETTVVPQLLSELDGVESLDN 333 (512)
T ss_pred ccchhhc--ccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCcc-chHHHHHHHHHHHHhcccccCCc
Confidence 3333333 46789999999999988875 36899999999999876543211 1112234455555554 367
Q ss_pred eEEEEccChHHHHHHhhccHHHHh--ccc-cEEecCCCHHHHHHHHHHHHH
Q 003088 424 LQCIASTTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLRE 471 (849)
Q Consensus 424 i~vI~at~~~~~~~~~~~d~al~~--Rf~-~i~~~~ps~~e~~~iL~~~~~ 471 (849)
+.+|+|||..+ .+|+++.| ||+ .|+|+.|+.+++.+||+.++.
T Consensus 334 ViVI~ATN~~d-----~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~ 379 (512)
T TIGR03689 334 VIVIGASNRED-----MIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLT 379 (512)
T ss_pred eEEEeccCChh-----hCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhh
Confidence 99999999987 89999999 998 699999999999999987664
No 76
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.73 E-value=7.9e-17 Score=185.63 Aligned_cols=200 Identities=20% Similarity=0.226 Sum_probs=150.8
Q ss_pred hhHHHHhhcCCCCccccHHHHHHHHHHHhcCC-CCCCeEeCCCCChHHHHHHHHHHHhhhCCCCc--cc-----------
Q 003088 279 DLTARASEELIDPVIGRETEIQRIIQILCRRT-KNNPILLGESGVGKTAIAEGLAIRIVQAEVPV--FL----------- 344 (849)
Q Consensus 279 ~l~~~~~~~~l~~iiG~~~~i~~l~~~l~~~~-~~niLL~GppGtGKT~la~~la~~l~~~~~p~--~~----------- 344 (849)
.|+++|||.+|+++||++..++.|...+...+ ..++||+||+|||||++|+.||+.+.+...+. .+
T Consensus 5 ~la~KyRP~sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~ 84 (624)
T PRK14959 5 SLTARYRPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQ 84 (624)
T ss_pred hHHHHhCCCCHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhc
Confidence 68999999999999999999999999887755 46678999999999999999999997532111 01
Q ss_pred -cCCeEEEeehhhhhccccccchHHHHHHHHHHHHH----hcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhh
Q 003088 345 -LSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL 419 (849)
Q Consensus 345 -~~~~~~~l~~~~~~~~~~~~g~~e~~l~~l~~~~~----~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~l 419 (849)
.+..++.++... .++ .+.++.+.+.+. .++..|+||||+|.| ..++++.|+.+|
T Consensus 85 g~hpDv~eId~a~------~~~--Id~iR~L~~~~~~~p~~g~~kVIIIDEad~L-------------t~~a~naLLk~L 143 (624)
T PRK14959 85 GMHVDVVEIDGAS------NRG--IDDAKRLKEAIGYAPMEGRYKVFIIDEAHML-------------TREAFNALLKTL 143 (624)
T ss_pred CCCCceEEEeccc------ccC--HHHHHHHHHHHHhhhhcCCceEEEEEChHhC-------------CHHHHHHHHHHh
Confidence 112244443211 111 122333333332 244679999999999 456788999999
Q ss_pred cC--CCeEEEEccChHHHHHHhhccHHHHhccccEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhccc
Q 003088 420 GR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497 (849)
Q Consensus 420 e~--~~i~vI~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~ 497 (849)
+. +.+++|++|+... .+.+.|++||+.+.|++++.++...+|..++. ..++.++++++..++.++.+.+
T Consensus 144 EEP~~~~ifILaTt~~~-----kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~----~egi~id~eal~lIA~~s~Gdl 214 (624)
T PRK14959 144 EEPPARVTFVLATTEPH-----KFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLG----REGVDYDPAAVRLIARRAAGSV 214 (624)
T ss_pred hccCCCEEEEEecCChh-----hhhHHHHhhhhccccCCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHcCCCH
Confidence 85 5788888888765 56678999999999999999999999988776 5678899999999999988754
Q ss_pred ccCcchhhHHHHHHHHh
Q 003088 498 SDRYLPDKAIDLVDEAG 514 (849)
Q Consensus 498 ~~r~~p~~ai~ll~~a~ 514 (849)
.+++.+++.++
T Consensus 215 ------R~Al~lLeqll 225 (624)
T PRK14959 215 ------RDSMSLLGQVL 225 (624)
T ss_pred ------HHHHHHHHHHH
Confidence 47888888654
No 77
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.73 E-value=4.2e-18 Score=169.80 Aligned_cols=179 Identities=27% Similarity=0.382 Sum_probs=84.7
Q ss_pred ccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeecccccccccccccc
Q 003088 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLI 708 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~ 708 (849)
..|+||+.++..+.-+. .|.+ |+||+||||||||++|+.++..+-. +.-.+..+...+..+-
T Consensus 3 ~dI~GQe~aKrAL~iAA----aG~h-------~lLl~GppGtGKTmlA~~l~~lLP~-------l~~~e~le~~~i~s~~ 64 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAA----AGGH-------HLLLIGPPGTGKTMLARRLPSLLPP-------LTEEEALEVSKIYSVA 64 (206)
T ss_dssp CCSSSTHHHHHHHHHHH----HCC---------EEEES-CCCTHHHHHHHHHHCS---------CCEECCESS--S-TT-
T ss_pred hhhcCcHHHHHHHHHHH----cCCC-------CeEEECCCCCCHHHHHHHHHHhCCC-------CchHHHhhhccccccc
Confidence 67999999987764444 4433 5999999999999999999987621 1111111111111111
Q ss_pred C---------CCC-----------CccccccCcchhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhhcCeeecC-CCce
Q 003088 709 G---------SPP-----------GYVGYEEGGLLTEAIRRRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDS-HGRR 767 (849)
Q Consensus 709 g---------~~~-----------g~vg~~~~~~l~~~i~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~-~g~~ 767 (849)
| .++ +.+|-.. ....+.+..+.+|||||||+..+++.+++.|++.|++|+++.. .|..
T Consensus 65 ~~~~~~~~~~~~Pfr~phhs~s~~~liGgg~-~~~PGeislAh~GVLflDE~~ef~~~vld~Lr~ple~g~v~i~R~~~~ 143 (206)
T PF01078_consen 65 GLGPDEGLIRQRPFRAPHHSASEAALIGGGR-PPRPGEISLAHRGVLFLDELNEFDRSVLDALRQPLEDGEVTISRAGGS 143 (206)
T ss_dssp --S---EEEE---EEEE-TT--HHHHHEEGG-GEEE-CGGGGTTSEEEECETTTS-HHHHHHHHHHHHHSBEEEEETTEE
T ss_pred cCCCCCceecCCCcccCCCCcCHHHHhCCCc-CCCcCHHHHhcCCEEEechhhhcCHHHHHHHHHHHHCCeEEEEECCce
Confidence 1 000 0111111 1234456778899999999999999999999999999998765 3556
Q ss_pred eecC-CeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhh---CChHHhhccccEEEcCCCCHHH
Q 003088 768 VSFK-NALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAY---FRPELLNRIDEVVVFRSLEKAQ 842 (849)
Q Consensus 768 ~~~~-~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~---~~pell~R~d~~i~f~pl~~~~ 842 (849)
+.++ ++.+|+|+|+ |+|||..+.. ..|.|...++++| +.-.|++|||..|..++++.++
T Consensus 144 ~~~Pa~f~lv~a~NP----------cpCG~~~~~~------~~C~Cs~~~~~~Y~~rlsgpllDRiDi~v~~~~~~~~~ 206 (206)
T PF01078_consen 144 VTYPARFLLVAAMNP----------CPCGYYGDPD------NRCRCSPRQIRRYQSRLSGPLLDRIDIHVEVPRVSYEE 206 (206)
T ss_dssp EEEB--EEEEEEE-S----------------------------------------------------------------
T ss_pred EEEecccEEEEEecc----------cccccccccc------ccccccccccccccccccccccccccccccccccccCC
Confidence 6665 9999999999 7899876532 3488898888888 4588999999999999988664
No 78
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.73 E-value=1.5e-17 Score=182.02 Aligned_cols=179 Identities=23% Similarity=0.339 Sum_probs=140.7
Q ss_pred ccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccccccCC
Q 003088 631 VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGS 710 (849)
Q Consensus 631 i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~ 710 (849)
++|++.+++.+...+...... ..+|||+|++||||+++|++||....+.+.||+.+||..+.+....+.+||.
T Consensus 1 liG~S~~m~~~~~~~~~~a~~-------~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~ 73 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPL-------DRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGH 73 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCC-------CCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhcc
Confidence 579999999998888876422 1249999999999999999999988777889999999988776666778886
Q ss_pred CCC-ccccccCcchhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCchhhhcc
Q 003088 711 PPG-YVGYEEGGLLTEAIRRRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKG 789 (849)
Q Consensus 711 ~~g-~vg~~~~~~l~~~i~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~~~ 789 (849)
..| +.|... ...+.+..+.+|+||||||+.+++.+|..|+++|+++.+...++......+++||++||.+...+...
T Consensus 74 ~~g~~~ga~~--~~~G~~~~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~ 151 (329)
T TIGR02974 74 EAGAFTGAQK--RHQGRFERADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAE 151 (329)
T ss_pred ccccccCccc--ccCCchhhCCCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhc
Confidence 543 223221 12234556778999999999999999999999999999887666555566999999999887766555
Q ss_pred cCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccc-cEEEcCCCC--HHHHcccc
Q 003088 790 RHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRID-EVVVFRSLE--KAQVCQLP 847 (849)
Q Consensus 790 ~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d-~~i~f~pl~--~~~~~~I~ 847 (849)
+. |+++|++||+ ..|.+|||. .+|+..++
T Consensus 152 g~-----------------------------fr~dL~~rl~~~~i~lPpLReR~eDI~~L~ 183 (329)
T TIGR02974 152 GR-----------------------------FRADLLDRLAFDVITLPPLRERQEDIMLLA 183 (329)
T ss_pred Cc-----------------------------hHHHHHHHhcchhcCCCchhhhhhhHHHHH
Confidence 44 8999999996 578888888 45555443
No 79
>CHL00176 ftsH cell division protein; Validated
Probab=99.73 E-value=1.2e-16 Score=187.43 Aligned_cols=204 Identities=21% Similarity=0.264 Sum_probs=145.8
Q ss_pred cCCCCccccHHHHHHHHHHH---hc---------CCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeeh
Q 003088 287 ELIDPVIGRETEIQRIIQIL---CR---------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM 354 (849)
Q Consensus 287 ~~l~~iiG~~~~i~~l~~~l---~~---------~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~ 354 (849)
..|++++|.++..+.+.+++ .. ..+.++||+||||||||++|+++|.+. +.+++.+++
T Consensus 180 ~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~----------~~p~i~is~ 249 (638)
T CHL00176 180 ITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA----------EVPFFSISG 249 (638)
T ss_pred CCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCeeeccH
Confidence 35789999998777766654 11 234689999999999999999999987 566777777
Q ss_pred hhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCC-CccHHHHHHHhhhh----cCCCeEEEEc
Q 003088 355 GLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNK-GTGLDISNLLKPSL----GRGELQCIAS 429 (849)
Q Consensus 355 ~~~~~~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~-~~~~~~~~~L~~~l----e~~~i~vI~a 429 (849)
+.+.. .+.|....+++.+|+.+....|+||||||+|.+....+.+.++. .......+.|+..+ .+.++++|++
T Consensus 250 s~f~~--~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaa 327 (638)
T CHL00176 250 SEFVE--MFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAA 327 (638)
T ss_pred HHHHH--HhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEe
Confidence 66542 33455667789999999988899999999999976543321111 11122333343333 3467899999
Q ss_pred cChHHHHHHhhccHHHHh--ccc-cEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhcccccCcchhhH
Q 003088 430 TTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKA 506 (849)
Q Consensus 430 t~~~~~~~~~~~d~al~~--Rf~-~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~~~r~~p~~a 506 (849)
||..+ .+|+++.| ||+ .|.|+.|+.++|.+||+.++... ...++..+..++..+.+|. +.+.
T Consensus 328 TN~~~-----~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~-----~~~~d~~l~~lA~~t~G~s-----gaDL 392 (638)
T CHL00176 328 TNRVD-----ILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNK-----KLSPDVSLELIARRTPGFS-----GADL 392 (638)
T ss_pred cCchH-----hhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhc-----ccchhHHHHHHHhcCCCCC-----HHHH
Confidence 99987 78999998 897 69999999999999998877631 1223445666777666543 4567
Q ss_pred HHHHHHHhhHH
Q 003088 507 IDLVDEAGSRA 517 (849)
Q Consensus 507 i~ll~~a~~~~ 517 (849)
..++.+|+..+
T Consensus 393 ~~lvneAal~a 403 (638)
T CHL00176 393 ANLLNEAAILT 403 (638)
T ss_pred HHHHHHHHHHH
Confidence 77888775543
No 80
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.72 E-value=1.5e-16 Score=181.57 Aligned_cols=203 Identities=22% Similarity=0.246 Sum_probs=156.8
Q ss_pred hhHHHHhhcCCCCccccHHHHHHHHHHHhcCCCCCC-eEeCCCCChHHHHHHHHHHHhhhCCCCcc--------------
Q 003088 279 DLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP-ILLGESGVGKTAIAEGLAIRIVQAEVPVF-------------- 343 (849)
Q Consensus 279 ~l~~~~~~~~l~~iiG~~~~i~~l~~~l~~~~~~ni-LL~GppGtGKT~la~~la~~l~~~~~p~~-------------- 343 (849)
.|.++|||.+|+++||++..++.+...+...+..|+ ||+||+|+|||++|+.+++.+.+...+..
T Consensus 3 ~l~~KyRP~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~ 82 (535)
T PRK08451 3 ALALKYRPKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALE 82 (535)
T ss_pred cHHHHHCCCCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhh
Confidence 578999999999999999999999999988877776 89999999999999999999875432210
Q ss_pred ccCCeEEEeehhhhhccccccchHHHHHHHHHHHHHh----cCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhh
Q 003088 344 LLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL 419 (849)
Q Consensus 344 ~~~~~~~~l~~~~~~~~~~~~g~~e~~l~~l~~~~~~----~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~l 419 (849)
..+..++.++.. ..+| .+.++.+++.+.. +...|++|||+|.| +.++++.|+..+
T Consensus 83 ~~h~dv~eldaa------s~~g--Id~IRelie~~~~~P~~~~~KVvIIDEad~L-------------t~~A~NALLK~L 141 (535)
T PRK08451 83 NRHIDIIEMDAA------SNRG--IDDIRELIEQTKYKPSMARFKIFIIDEVHML-------------TKEAFNALLKTL 141 (535)
T ss_pred cCCCeEEEeccc------cccC--HHHHHHHHHHHhhCcccCCeEEEEEECcccC-------------CHHHHHHHHHHH
Confidence 012234443321 1111 2334555544332 34569999999999 567889999999
Q ss_pred cC--CCeEEEEccChHHHHHHhhccHHHHhccccEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhccc
Q 003088 420 GR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497 (849)
Q Consensus 420 e~--~~i~vI~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~ 497 (849)
|. ..+.+|.+|+... .+.+++++|++.++|.+++.++....+..++. ..++.++++++..++..+++-+
T Consensus 142 EEpp~~t~FIL~ttd~~-----kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~----~EGi~i~~~Al~~Ia~~s~Gdl 212 (535)
T PRK08451 142 EEPPSYVKFILATTDPL-----KLPATILSRTQHFRFKQIPQNSIISHLKTILE----KEGVSYEPEALEILARSGNGSL 212 (535)
T ss_pred hhcCCceEEEEEECChh-----hCchHHHhhceeEEcCCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHcCCcH
Confidence 86 4577888877654 67799999999999999999999999988877 5689999999999999988744
Q ss_pred ccCcchhhHHHHHHHHhhHH
Q 003088 498 SDRYLPDKAIDLVDEAGSRA 517 (849)
Q Consensus 498 ~~r~~p~~ai~ll~~a~~~~ 517 (849)
.+++.+++.++...
T Consensus 213 ------R~alnlLdqai~~~ 226 (535)
T PRK08451 213 ------RDTLTLLDQAIIYC 226 (535)
T ss_pred ------HHHHHHHHHHHHhc
Confidence 57888888877654
No 81
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.72 E-value=2.3e-16 Score=191.71 Aligned_cols=206 Identities=20% Similarity=0.331 Sum_probs=156.2
Q ss_pred hHHHHHHHhHhCCCcccCCHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHH
Q 003088 595 DDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTE 674 (849)
Q Consensus 595 ~~i~~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~ 674 (849)
..+...++.++++|+...+.+ ...+..++..|.+.++|++++++.|...+....... .+..| ++||+||||||||+
T Consensus 287 ~~~~~yl~~~~~ip~~~~~~~-~~~~~~~~~~l~~~~~G~~~~k~~i~~~~~~~~~~~-~~~~~--~lll~GppG~GKT~ 362 (775)
T TIGR00763 287 TVTRNYLDWLTDLPWGKYSKE-NLDLKRAKEILDEDHYGLKKVKERILEYLAVQKLRG-KMKGP--ILCLVGPPGVGKTS 362 (775)
T ss_pred HHHHHHHHHHHCCCCcccccc-hhhHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhc-CCCCc--eEEEECCCCCCHHH
Confidence 346778888999999887766 777889999999999999999999988665432211 11222 59999999999999
Q ss_pred HHHHHHHHhcCCCCceeEeeccccccccccccccCCCCCccccccCcchhHHHHhC--CCeEEEEeCccccCHH----HH
Q 003088 675 LAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRRR--PFTLLLLDEIEKAHPD----IF 748 (849)
Q Consensus 675 lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~i~~~--~~~vl~lDEid~l~~~----~~ 748 (849)
+|++||+.+ +.+++.+++....+ .+.+.|....|+|...+. +.+.+..+ .+.||||||||++++. ..
T Consensus 363 lAk~iA~~l---~~~~~~i~~~~~~~---~~~i~g~~~~~~g~~~g~-i~~~l~~~~~~~~villDEidk~~~~~~~~~~ 435 (775)
T TIGR00763 363 LGKSIAKAL---NRKFVRFSLGGVRD---EAEIRGHRRTYVGAMPGR-IIQGLKKAKTKNPLFLLDEIDKIGSSFRGDPA 435 (775)
T ss_pred HHHHHHHHh---cCCeEEEeCCCccc---HHHHcCCCCceeCCCCch-HHHHHHHhCcCCCEEEEechhhcCCccCCCHH
Confidence 999999997 56789998865533 344556666777776543 33444332 3459999999999775 45
Q ss_pred HHHHHHhhc---CeeecCC-CceeecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChH
Q 003088 749 NILLQVFED---GHLTDSH-GRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPE 824 (849)
Q Consensus 749 ~~Ll~~le~---g~~~~~~-g~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pe 824 (849)
+.|+++||. +.+.|.. +..+++++++||+|+|... .++|+
T Consensus 436 ~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~------------------------------------~i~~~ 479 (775)
T TIGR00763 436 SALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSID------------------------------------TIPRP 479 (775)
T ss_pred HHHHHhcCHHhcCccccccCCceeccCCEEEEEecCCch------------------------------------hCCHH
Confidence 899999985 5566653 5667788999999999731 17899
Q ss_pred HhhccccEEEcCCCCHHHHccccC
Q 003088 825 LLNRIDEVVVFRSLEKAQVCQLPL 848 (849)
Q Consensus 825 ll~R~d~~i~f~pl~~~~~~~I~~ 848 (849)
|++|| .+|.|++|+.++..+|++
T Consensus 480 L~~R~-~vi~~~~~~~~e~~~I~~ 502 (775)
T TIGR00763 480 LLDRM-EVIELSGYTEEEKLEIAK 502 (775)
T ss_pred HhCCe-eEEecCCCCHHHHHHHHH
Confidence 99999 588999999998888763
No 82
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=1.9e-16 Score=182.92 Aligned_cols=204 Identities=20% Similarity=0.245 Sum_probs=149.6
Q ss_pred cCCCCccccHHHHHHHHHHH---hc---------CCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeeh
Q 003088 287 ELIDPVIGRETEIQRIIQIL---CR---------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM 354 (849)
Q Consensus 287 ~~l~~iiG~~~~i~~l~~~l---~~---------~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~ 354 (849)
-.|+|+.|.++..+.|.+++ .. +-+..+||+||||||||.||+++|.+. +.+++.+..
T Consensus 308 V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA----------gVPF~svSG 377 (774)
T KOG0731|consen 308 VKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFSVSG 377 (774)
T ss_pred CccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc----------CCceeeech
Confidence 36899999998777766654 22 345789999999999999999999988 778888888
Q ss_pred hhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCC-CCCCCC-CccHHHHHHHhhhhc----CCCeEEEE
Q 003088 355 GLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGT-VGRGNK-GTGLDISNLLKPSLG----RGELQCIA 428 (849)
Q Consensus 355 ~~~~~~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~-~~~~~~-~~~~~~~~~L~~~le----~~~i~vI~ 428 (849)
+.++..-. |.-..+++.+|..++...|+|+||||||.+-..+. .+.+.+ .......|.|+.-++ ...+++++
T Consensus 378 SEFvE~~~--g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a 455 (774)
T KOG0731|consen 378 SEFVEMFV--GVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLA 455 (774)
T ss_pred HHHHHHhc--ccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEe
Confidence 88775443 33377899999999999999999999999976552 112111 112223455555444 46699999
Q ss_pred ccChHHHHHHhhccHHHHh--ccc-cEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhcccccCcchhh
Q 003088 429 STTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDK 505 (849)
Q Consensus 429 at~~~~~~~~~~~d~al~~--Rf~-~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~~~r~~p~~ 505 (849)
+||..+ .+|++|+| ||+ .|.++.|+...|.+|++-... ..+..-++..+..++.++.+| .+++
T Consensus 456 ~tnr~d-----~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~----~~~~~~e~~dl~~~a~~t~gf-----~gad 521 (774)
T KOG0731|consen 456 ATNRPD-----ILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLR----KKKLDDEDVDLSKLASLTPGF-----SGAD 521 (774)
T ss_pred ccCCcc-----ccCHHhcCCCccccceeccCCchhhhHHHHHHHhh----ccCCCcchhhHHHHHhcCCCC-----cHHH
Confidence 999998 89999999 998 699999999999999987665 333332333444455555554 3466
Q ss_pred HHHHHHHHhhH
Q 003088 506 AIDLVDEAGSR 516 (849)
Q Consensus 506 ai~ll~~a~~~ 516 (849)
...++.+|+-.
T Consensus 522 l~n~~neaa~~ 532 (774)
T KOG0731|consen 522 LANLCNEAALL 532 (774)
T ss_pred HHhhhhHHHHH
Confidence 66777776544
No 83
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.72 E-value=2.6e-17 Score=189.10 Aligned_cols=181 Identities=19% Similarity=0.246 Sum_probs=142.2
Q ss_pred ccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHH--------hcCCCCceeEeecccccc
Q 003088 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAAC--------YFGSESSMLRLDMSEYME 700 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~--------l~~~~~~~i~i~~~~~~~ 700 (849)
+.++|++.+++.+...+...... ..+|||+|++||||+++|++||+. ..+.+.||+.+||..+.+
T Consensus 219 ~~iiG~S~~m~~~~~~i~~~A~s-------~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e 291 (538)
T PRK15424 219 GDLLGQSPQMEQVRQTILLYARS-------SAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAE 291 (538)
T ss_pred hheeeCCHHHHHHHHHHHHHhCC-------CCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCCh
Confidence 45999999999999998764322 124999999999999999999998 666788999999999988
Q ss_pred ccccccccCCCCCc-cccccCcchhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEec
Q 003088 701 RHTVSKLIGSPPGY-VGYEEGGLLTEAIRRRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTS 779 (849)
Q Consensus 701 ~~~~~~l~g~~~g~-vg~~~~~~l~~~i~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ts 779 (849)
....+.|||...|. .|... +.-.+.+..+.+|+||||||+.+++..|..|+++|+++.+...++......++++|++|
T Consensus 292 ~lleseLFG~~~gaftga~~-~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~r~G~~~~~~~dvRiIaat 370 (538)
T PRK15424 292 SLLEAELFGYEEGAFTGSRR-GGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISAT 370 (538)
T ss_pred hhHHHHhcCCccccccCccc-cccCCchhccCCCEEEEcChHhCCHHHHHHHHhhhhcCeEEecCCCceeccceEEEEec
Confidence 77778899975543 23211 11223455678899999999999999999999999999988766655555699999999
Q ss_pred CCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccc-cEEEcCCCCH--HHHccc
Q 003088 780 NVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRID-EVVVFRSLEK--AQVCQL 846 (849)
Q Consensus 780 n~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d-~~i~f~pl~~--~~~~~I 846 (849)
|.+...+...+. |+++|++|++ ..|..|||.+ +|+..+
T Consensus 371 ~~~L~~~v~~g~-----------------------------Fr~dL~yrL~~~~I~lPPLReR~eDI~~L 411 (538)
T PRK15424 371 HCDLEEDVRQGR-----------------------------FRRDLFYRLSILRLQLPPLRERVADILPL 411 (538)
T ss_pred CCCHHHHHhccc-----------------------------chHHHHHHhcCCeecCCChhhchhHHHHH
Confidence 998776655544 8999999997 5777888773 344433
No 84
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.72 E-value=2.1e-16 Score=181.23 Aligned_cols=203 Identities=19% Similarity=0.234 Sum_probs=153.0
Q ss_pred hhhHHHHhhcCCCCccccHHHHHHHHHHHhcCCCCC-CeEeCCCCChHHHHHHHHHHHhhhCCCCc--cccC--------
Q 003088 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEVPV--FLLS-------- 346 (849)
Q Consensus 278 ~~l~~~~~~~~l~~iiG~~~~i~~l~~~l~~~~~~n-iLL~GppGtGKT~la~~la~~l~~~~~p~--~~~~-------- 346 (849)
..|.++|||..|++++|++..++.+...+...+..| +||+||+|+|||++|+.+|+.+.+..... .+..
T Consensus 4 ~~~~~KyRP~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~ 83 (605)
T PRK05896 4 ITFYRKYRPHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESIN 83 (605)
T ss_pred hhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHH
Confidence 379999999999999999999999999887766665 78999999999999999999997543211 1111
Q ss_pred ----CeEEEeehhhhhccccccchHHHHHHHHHHHHHh----cCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhh
Q 003088 347 ----KRIMSLDMGLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPS 418 (849)
Q Consensus 347 ----~~~~~l~~~~~~~~~~~~g~~e~~l~~l~~~~~~----~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~ 418 (849)
..++.++... ..+ .+.++.+++.+.. ++..|++|||+|.| +..+++.|+.+
T Consensus 84 ~~~h~DiieIdaas------~ig--Vd~IReIi~~~~~~P~~~~~KVIIIDEad~L-------------t~~A~NaLLKt 142 (605)
T PRK05896 84 TNQSVDIVELDAAS------NNG--VDEIRNIIDNINYLPTTFKYKVYIIDEAHML-------------STSAWNALLKT 142 (605)
T ss_pred cCCCCceEEecccc------ccC--HHHHHHHHHHHHhchhhCCcEEEEEechHhC-------------CHHHHHHHHHH
Confidence 1333433211 111 1224555544432 34569999999999 34578899999
Q ss_pred hcC--CCeEEEEccChHHHHHHhhccHHHHhccccEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhcc
Q 003088 419 LGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496 (849)
Q Consensus 419 le~--~~i~vI~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~ 496 (849)
|+. +.+++|++|+... .+.+++++||+.+.|.+++.++....|...+. ..++.++++++..++.++.+.
T Consensus 143 LEEPp~~tvfIL~Tt~~~-----KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~----kegi~Is~eal~~La~lS~Gd 213 (605)
T PRK05896 143 LEEPPKHVVFIFATTEFQ-----KIPLTIISRCQRYNFKKLNNSELQELLKSIAK----KEKIKIEDNAIDKIADLADGS 213 (605)
T ss_pred HHhCCCcEEEEEECCChH-----hhhHHHHhhhhhcccCCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHcCCc
Confidence 985 4577887777654 67889999999999999999999999988876 568899999999999998864
Q ss_pred cccCcchhhHHHHHHHHhhH
Q 003088 497 ISDRYLPDKAIDLVDEAGSR 516 (849)
Q Consensus 497 ~~~r~~p~~ai~ll~~a~~~ 516 (849)
+ ..++.+++..+..
T Consensus 214 l------R~AlnlLekL~~y 227 (605)
T PRK05896 214 L------RDGLSILDQLSTF 227 (605)
T ss_pred H------HHHHHHHHHHHhh
Confidence 4 4677777775443
No 85
>CHL00181 cbbX CbbX; Provisional
Probab=99.71 E-value=7.1e-17 Score=173.15 Aligned_cols=174 Identities=21% Similarity=0.378 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHH-------HhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcC----
Q 003088 617 RMLLVGLEEQLKKRVIGQDEAVAAISRAVK-------RSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFG---- 685 (849)
Q Consensus 617 ~~~~~~l~~~l~~~i~Gq~~~i~~l~~~l~-------~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~---- 685 (849)
...++.+...|.+.++|+++++++|...+. +...|...|. +..|++|+||||||||++|+++++.++.
T Consensus 11 ~~~~~~~~~~l~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~-~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~ 89 (287)
T CHL00181 11 KTQIQEVLDILDEELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSN-PGLHMSFTGSPGTGKTTVALKMADILYKLGYI 89 (287)
T ss_pred ccCHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCC-CCceEEEECCCCCCHHHHHHHHHHHHHHcCCC
Confidence 344567778888899999999998866542 2345665543 3346999999999999999999998753
Q ss_pred CCCceeEeeccccccccccccccCCCCCccccccCcchhHHHHhCCCeEEEEeCcccc---------CHHHHHHHHHHhh
Q 003088 686 SESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRRRPFTLLLLDEIEKA---------HPDIFNILLQVFE 756 (849)
Q Consensus 686 ~~~~~i~i~~~~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~i~~~~~~vl~lDEid~l---------~~~~~~~Ll~~le 756 (849)
...+++.++++++.. .|+|... ....+.+.++.++||||||++.+ ..++++.|++.|+
T Consensus 90 ~~~~~~~v~~~~l~~------------~~~g~~~-~~~~~~l~~a~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me 156 (287)
T CHL00181 90 KKGHLLTVTRDDLVG------------QYIGHTA-PKTKEVLKKAMGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVME 156 (287)
T ss_pred CCCceEEecHHHHHH------------HHhccch-HHHHHHHHHccCCEEEEEccchhccCCCccchHHHHHHHHHHHHh
Confidence 233577777655432 1444332 23455677778899999999986 5679999999998
Q ss_pred cCeeecCCCceeecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhh--CChHHhhccccEEE
Q 003088 757 DGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAY--FRPELLNRIDEVVV 834 (849)
Q Consensus 757 ~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~--~~pell~R~d~~i~ 834 (849)
++. .+++||++++... +..+ ++|+|.+||+.+|.
T Consensus 157 ~~~-----------~~~~vI~ag~~~~---------------------------------~~~~~~~np~L~sR~~~~i~ 192 (287)
T CHL00181 157 NQR-----------DDLVVIFAGYKDR---------------------------------MDKFYESNPGLSSRIANHVD 192 (287)
T ss_pred cCC-----------CCEEEEEeCCcHH---------------------------------HHHHHhcCHHHHHhCCceEE
Confidence 732 4678888876421 1111 56999999999999
Q ss_pred cCCCCHHHHccccC
Q 003088 835 FRSLEKAQVCQLPL 848 (849)
Q Consensus 835 f~pl~~~~~~~I~~ 848 (849)
|+||+.+++.+|++
T Consensus 193 F~~~t~~el~~I~~ 206 (287)
T CHL00181 193 FPDYTPEELLQIAK 206 (287)
T ss_pred cCCcCHHHHHHHHH
Confidence 99999999998864
No 86
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.71 E-value=9e-16 Score=169.13 Aligned_cols=190 Identities=20% Similarity=0.249 Sum_probs=137.2
Q ss_pred hHHHHhhcCCCCccccHHHHHHHHHHHhc-----CCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeeh
Q 003088 280 LTARASEELIDPVIGRETEIQRIIQILCR-----RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM 354 (849)
Q Consensus 280 l~~~~~~~~l~~iiG~~~~i~~l~~~l~~-----~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~ 354 (849)
|..++||..|++++|+++.++.+..++.. ...++++|+||||||||++|+.+|+++ +..+...+.
T Consensus 15 ~~~~~rP~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l----------~~~~~~~~~ 84 (328)
T PRK00080 15 IERSLRPKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM----------GVNIRITSG 84 (328)
T ss_pred hhhhcCcCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh----------CCCeEEEec
Confidence 36788999999999999999998877642 335689999999999999999999998 333333222
Q ss_pred hhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcC-------------
Q 003088 355 GLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR------------- 421 (849)
Q Consensus 355 ~~~~~~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~------------- 421 (849)
..+. ..+ .+..++..+ ..+.||||||+|.+. ....+.|...++.
T Consensus 85 ~~~~----~~~----~l~~~l~~l--~~~~vl~IDEi~~l~-------------~~~~e~l~~~~e~~~~~~~l~~~~~~ 141 (328)
T PRK00080 85 PALE----KPG----DLAAILTNL--EEGDVLFIDEIHRLS-------------PVVEEILYPAMEDFRLDIMIGKGPAA 141 (328)
T ss_pred cccc----ChH----HHHHHHHhc--ccCCEEEEecHhhcc-------------hHHHHHHHHHHHhcceeeeeccCccc
Confidence 2111 112 233333333 245799999999993 1233444444432
Q ss_pred -------CCeEEEEccChHHHHHHhhccHHHHhccc-cEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhh
Q 003088 422 -------GELQCIASTTQDEHRTQFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLS 493 (849)
Q Consensus 422 -------~~i~vI~at~~~~~~~~~~~d~al~~Rf~-~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls 493 (849)
..+.+|++|+... .++++|++||. .+.|++|+.+++.+||+.... ..++.++++++..++..+
T Consensus 142 ~~~~~~l~~~~li~at~~~~-----~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~----~~~~~~~~~~~~~ia~~~ 212 (328)
T PRK00080 142 RSIRLDLPPFTLIGATTRAG-----LLTSPLRDRFGIVQRLEFYTVEELEKIVKRSAR----ILGVEIDEEGALEIARRS 212 (328)
T ss_pred cceeecCCCceEEeecCCcc-----cCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHH----HcCCCcCHHHHHHHHHHc
Confidence 2367889988775 67889999996 699999999999999987766 568899999999999988
Q ss_pred hcccccCcchhhHHHHHHHHhhHH
Q 003088 494 ARYISDRYLPDKAIDLVDEAGSRA 517 (849)
Q Consensus 494 ~~~~~~r~~p~~ai~ll~~a~~~~ 517 (849)
.++ |..+..+++.+..++
T Consensus 213 ~G~------pR~a~~~l~~~~~~a 230 (328)
T PRK00080 213 RGT------PRIANRLLRRVRDFA 230 (328)
T ss_pred CCC------chHHHHHHHHHHHHH
Confidence 874 356667766654433
No 87
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.71 E-value=2.6e-16 Score=183.31 Aligned_cols=203 Identities=19% Similarity=0.229 Sum_probs=155.4
Q ss_pred hhhHHHHhhcCCCCccccHHHHHHHHHHHhcCCCCC-CeEeCCCCChHHHHHHHHHHHhhhCCC-----Cc--cc-----
Q 003088 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEV-----PV--FL----- 344 (849)
Q Consensus 278 ~~l~~~~~~~~l~~iiG~~~~i~~l~~~l~~~~~~n-iLL~GppGtGKT~la~~la~~l~~~~~-----p~--~~----- 344 (849)
..|.++|||.+|+++||++..++.|...+...+..| +||+||+|+|||++|+.+|+.+.+... |. ..
T Consensus 12 ~~la~KyRP~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~ 91 (598)
T PRK09111 12 RVLARKYRPQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEH 91 (598)
T ss_pred hhHHhhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHH
Confidence 458999999999999999999999999998777665 899999999999999999999875321 10 00
Q ss_pred -------cCCeEEEeehhhhhccccccchHHHHHHHHHHHHHh----cCCeEEEEcCcchhhhCCCCCCCCCCccHHHHH
Q 003088 345 -------LSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISN 413 (849)
Q Consensus 345 -------~~~~~~~l~~~~~~~~~~~~g~~e~~l~~l~~~~~~----~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~ 413 (849)
.+..++.++..+ ..| .+.++.+++.+.. ++..|+||||+|.| +..++|
T Consensus 92 C~~i~~g~h~Dv~e~~a~s------~~g--vd~IReIie~~~~~P~~a~~KVvIIDEad~L-------------s~~a~n 150 (598)
T PRK09111 92 CQAIMEGRHVDVLEMDAAS------HTG--VDDIREIIESVRYRPVSARYKVYIIDEVHML-------------STAAFN 150 (598)
T ss_pred HHHHhcCCCCceEEecccc------cCC--HHHHHHHHHHHHhchhcCCcEEEEEEChHhC-------------CHHHHH
Confidence 011233333221 111 2335666665543 34679999999999 346788
Q ss_pred HHhhhhcC--CCeEEEEccChHHHHHHhhccHHHHhccccEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHH
Q 003088 414 LLKPSLGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVH 491 (849)
Q Consensus 414 ~L~~~le~--~~i~vI~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ 491 (849)
.|+.+||+ +.+.+|++|+... .+.+.+++||+.+.|..++.++...+|...++ ..++.++++++..++.
T Consensus 151 aLLKtLEePp~~~~fIl~tte~~-----kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~----kegi~i~~eAl~lIa~ 221 (598)
T PRK09111 151 ALLKTLEEPPPHVKFIFATTEIR-----KVPVTVLSRCQRFDLRRIEADVLAAHLSRIAA----KEGVEVEDEALALIAR 221 (598)
T ss_pred HHHHHHHhCCCCeEEEEEeCChh-----hhhHHHHhheeEEEecCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHH
Confidence 99999986 5678888887655 46678999999999999999999999988877 6789999999999999
Q ss_pred hhhcccccCcchhhHHHHHHHHhhH
Q 003088 492 LSARYISDRYLPDKAIDLVDEAGSR 516 (849)
Q Consensus 492 ls~~~~~~r~~p~~ai~ll~~a~~~ 516 (849)
.+.+.. ..++.+++.++..
T Consensus 222 ~a~Gdl------r~al~~Ldkli~~ 240 (598)
T PRK09111 222 AAEGSV------RDGLSLLDQAIAH 240 (598)
T ss_pred HcCCCH------HHHHHHHHHHHhh
Confidence 998764 4677778776543
No 88
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.71 E-value=3e-16 Score=183.26 Aligned_cols=202 Identities=22% Similarity=0.288 Sum_probs=153.3
Q ss_pred hhhHHHHhhcCCCCccccHHHHHHHHHHHhcCCCCCC-eEeCCCCChHHHHHHHHHHHhhhCCCCcc---cc--------
Q 003088 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP-ILLGESGVGKTAIAEGLAIRIVQAEVPVF---LL-------- 345 (849)
Q Consensus 278 ~~l~~~~~~~~l~~iiG~~~~i~~l~~~l~~~~~~ni-LL~GppGtGKT~la~~la~~l~~~~~p~~---~~-------- 345 (849)
..|+++|||..|++++|++..++.|...+...+..|. ||+||+|+|||++|+.+|+.+.+...... +.
T Consensus 6 ~~l~~KyRP~~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~ 85 (725)
T PRK07133 6 KALYRKYRPKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNN 85 (725)
T ss_pred hhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcC
Confidence 4689999999999999999999999999988777775 89999999999999999999876432110 10
Q ss_pred CCeEEEeehhhhhccccccchHHHHHHHHHHHHHh----cCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcC
Q 003088 346 SKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR 421 (849)
Q Consensus 346 ~~~~~~l~~~~~~~~~~~~g~~e~~l~~l~~~~~~----~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~ 421 (849)
+..++.++. ....+ .+.++.+.+.+.. ++..|+||||+|.| +..+++.|+..|+.
T Consensus 86 ~~Dvieida------asn~~--vd~IReLie~~~~~P~~g~~KV~IIDEa~~L-------------T~~A~NALLKtLEE 144 (725)
T PRK07133 86 SLDIIEMDA------ASNNG--VDEIRELIENVKNLPTQSKYKIYIIDEVHML-------------SKSAFNALLKTLEE 144 (725)
T ss_pred CCcEEEEec------cccCC--HHHHHHHHHHHHhchhcCCCEEEEEEChhhC-------------CHHHHHHHHHHhhc
Confidence 112222221 11111 2335666666553 44579999999999 34678899999986
Q ss_pred --CCeEEEEccChHHHHHHhhccHHHHhccccEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhccccc
Q 003088 422 --GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISD 499 (849)
Q Consensus 422 --~~i~vI~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~~~ 499 (849)
+.+++|++|+... .+.+.+++||+.+.|.+++.++...+|...+. ..++.++++++..++.++.+-+
T Consensus 145 PP~~tifILaTte~~-----KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~----kegI~id~eAl~~LA~lS~Gsl-- 213 (725)
T PRK07133 145 PPKHVIFILATTEVH-----KIPLTILSRVQRFNFRRISEDEIVSRLEFILE----KENISYEKNALKLIAKLSSGSL-- 213 (725)
T ss_pred CCCceEEEEEcCChh-----hhhHHHHhhceeEEccCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHcCCCH--
Confidence 4578888887655 67789999999999999999999999988776 5678999999999999988644
Q ss_pred CcchhhHHHHHHHHhh
Q 003088 500 RYLPDKAIDLVDEAGS 515 (849)
Q Consensus 500 r~~p~~ai~ll~~a~~ 515 (849)
..|+.+++..+.
T Consensus 214 ----R~AlslLekl~~ 225 (725)
T PRK07133 214 ----RDALSIAEQVSI 225 (725)
T ss_pred ----HHHHHHHHHHHH
Confidence 366666666543
No 89
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.71 E-value=1.3e-16 Score=184.64 Aligned_cols=202 Identities=19% Similarity=0.209 Sum_probs=155.5
Q ss_pred hhHHHHhhcCCCCccccHHHHHHHHHHHhcCCCCCC-eEeCCCCChHHHHHHHHHHHhhhCCCCc--ccc----------
Q 003088 279 DLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP-ILLGESGVGKTAIAEGLAIRIVQAEVPV--FLL---------- 345 (849)
Q Consensus 279 ~l~~~~~~~~l~~iiG~~~~i~~l~~~l~~~~~~ni-LL~GppGtGKT~la~~la~~l~~~~~p~--~~~---------- 345 (849)
.|.++|||..|+++||++..++.+...+...+..|. ||+||+|+|||++|+.+|+.+.+..... ...
T Consensus 5 ~l~~k~rP~~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~ 84 (527)
T PRK14969 5 VLARKWRPKSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDS 84 (527)
T ss_pred HHHHHhCCCcHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhc
Confidence 488999999999999999999999999988777775 8999999999999999999996532111 000
Q ss_pred --CCeEEEeehhhhhccccccchHHHHHHHHHHHHHh----cCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhh
Q 003088 346 --SKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL 419 (849)
Q Consensus 346 --~~~~~~l~~~~~~~~~~~~g~~e~~l~~l~~~~~~----~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~l 419 (849)
...++.++... .. -.+.++.+++.+.. ++..|+||||+|.| +..++|.|+..+
T Consensus 85 ~~~~d~~ei~~~~------~~--~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~l-------------s~~a~naLLK~L 143 (527)
T PRK14969 85 GRFVDLIEVDAAS------NT--QVDAMRELLDNAQYAPTRGRFKVYIIDEVHML-------------SKSAFNAMLKTL 143 (527)
T ss_pred CCCCceeEeeccc------cC--CHHHHHHHHHHHhhCcccCCceEEEEcCcccC-------------CHHHHHHHHHHH
Confidence 11233333211 11 12335566665543 34579999999999 456788999999
Q ss_pred cC--CCeEEEEccChHHHHHHhhccHHHHhccccEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhccc
Q 003088 420 GR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497 (849)
Q Consensus 420 e~--~~i~vI~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~ 497 (849)
++ +.+.+|++|+... .+.+.+++||+.+.|..++.++..+.|..++. .+++.++++++..++..+++-+
T Consensus 144 Eepp~~~~fIL~t~d~~-----kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~----~egi~~~~~al~~la~~s~Gsl 214 (527)
T PRK14969 144 EEPPEHVKFILATTDPQ-----KIPVTVLSRCLQFNLKQMPPPLIVSHLQHILE----QENIPFDATALQLLARAAAGSM 214 (527)
T ss_pred hCCCCCEEEEEEeCChh-----hCchhHHHHHHHHhcCCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHcCCCH
Confidence 86 5688888887765 55667999999999999999999999988776 5678999999999999888644
Q ss_pred ccCcchhhHHHHHHHHhhH
Q 003088 498 SDRYLPDKAIDLVDEAGSR 516 (849)
Q Consensus 498 ~~r~~p~~ai~ll~~a~~~ 516 (849)
.+++.+++.++..
T Consensus 215 ------r~al~lldqai~~ 227 (527)
T PRK14969 215 ------RDALSLLDQAIAY 227 (527)
T ss_pred ------HHHHHHHHHHHHh
Confidence 5788888888764
No 90
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.70 E-value=3.2e-16 Score=182.73 Aligned_cols=202 Identities=19% Similarity=0.200 Sum_probs=155.5
Q ss_pred hhHHHHhhcCCCCccccHHHHHHHHHHHhcCCCCC-CeEeCCCCChHHHHHHHHHHHhhhCCCCcc--c-----------
Q 003088 279 DLTARASEELIDPVIGRETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEVPVF--L----------- 344 (849)
Q Consensus 279 ~l~~~~~~~~l~~iiG~~~~i~~l~~~l~~~~~~n-iLL~GppGtGKT~la~~la~~l~~~~~p~~--~----------- 344 (849)
.|..+|||.+|++++|++..++.|...+...+..| +||+||+|||||++|+.+|+.+.+...+.. +
T Consensus 5 al~~k~rP~~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~ 84 (559)
T PRK05563 5 ALYRKWRPQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITN 84 (559)
T ss_pred HHHHHhCCCcHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhc
Confidence 57899999999999999999999999998877777 578999999999999999999876432211 1
Q ss_pred -cCCeEEEeehhhhhccccccchHHHHHHHHHHHHHh----cCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhh
Q 003088 345 -LSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL 419 (849)
Q Consensus 345 -~~~~~~~l~~~~~~~~~~~~g~~e~~l~~l~~~~~~----~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~l 419 (849)
.+..++.+|..+ +...+.++.+.+.+.. ++..|+||||+|.| +..++|.|+..+
T Consensus 85 g~~~dv~eidaas--------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~L-------------t~~a~naLLKtL 143 (559)
T PRK05563 85 GSLMDVIEIDAAS--------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHML-------------STGAFNALLKTL 143 (559)
T ss_pred CCCCCeEEeeccc--------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccC-------------CHHHHHHHHHHh
Confidence 122344443321 1123345566665543 44679999999999 456788888889
Q ss_pred cC--CCeEEEEccChHHHHHHhhccHHHHhccccEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhccc
Q 003088 420 GR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497 (849)
Q Consensus 420 e~--~~i~vI~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~ 497 (849)
+. ..+++|++|+... .+.+.+++||+.+.|.+|+.++....|..+++ ..++.++++++..++..+.+-.
T Consensus 144 Eepp~~~ifIlatt~~~-----ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~----~egi~i~~~al~~ia~~s~G~~ 214 (559)
T PRK05563 144 EEPPAHVIFILATTEPH-----KIPATILSRCQRFDFKRISVEDIVERLKYILD----KEGIEYEDEALRLIARAAEGGM 214 (559)
T ss_pred cCCCCCeEEEEEeCChh-----hCcHHHHhHheEEecCCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHcCCCH
Confidence 86 4577787777654 67899999999999999999999999988877 6688999999999999887643
Q ss_pred ccCcchhhHHHHHHHHhhH
Q 003088 498 SDRYLPDKAIDLVDEAGSR 516 (849)
Q Consensus 498 ~~r~~p~~ai~ll~~a~~~ 516 (849)
..++.+++.++..
T Consensus 215 ------R~al~~Ldq~~~~ 227 (559)
T PRK05563 215 ------RDALSILDQAISF 227 (559)
T ss_pred ------HHHHHHHHHHHHh
Confidence 4778888877654
No 91
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.70 E-value=2.7e-16 Score=180.45 Aligned_cols=201 Identities=21% Similarity=0.240 Sum_probs=153.2
Q ss_pred hhHHHHhhcCCCCccccHHHHHHHHHHHhcCCCCCC-eEeCCCCChHHHHHHHHHHHhhhCC-CCcc------------c
Q 003088 279 DLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP-ILLGESGVGKTAIAEGLAIRIVQAE-VPVF------------L 344 (849)
Q Consensus 279 ~l~~~~~~~~l~~iiG~~~~i~~l~~~l~~~~~~ni-LL~GppGtGKT~la~~la~~l~~~~-~p~~------------~ 344 (849)
.|.++|||..|++++|++..++.|..++...+..|. ||+|||||||||+|+++|+.+.+.+ .+.. .
T Consensus 3 ~l~~KyRP~~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~ 82 (504)
T PRK14963 3 ALYQRARPITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRG 82 (504)
T ss_pred hHHHhhCCCCHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcC
Confidence 366899999999999999999999999988888887 9999999999999999999987522 1100 1
Q ss_pred cCCeEEEeehhhhhccccccchHHHHHHHHHHHHHh----cCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhc
Q 003088 345 LSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG 420 (849)
Q Consensus 345 ~~~~~~~l~~~~~~~~~~~~g~~e~~l~~l~~~~~~----~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le 420 (849)
....++.++... ..+ ...++.+.+.+.. +...|+||||+|.+ +.+.++.|+..++
T Consensus 83 ~h~dv~el~~~~------~~~--vd~iR~l~~~~~~~p~~~~~kVVIIDEad~l-------------s~~a~naLLk~LE 141 (504)
T PRK14963 83 AHPDVLEIDAAS------NNS--VEDVRDLREKVLLAPLRGGRKVYILDEAHMM-------------SKSAFNALLKTLE 141 (504)
T ss_pred CCCceEEecccc------cCC--HHHHHHHHHHHhhccccCCCeEEEEECcccc-------------CHHHHHHHHHHHH
Confidence 122344444321 111 2224444444432 35679999999988 3466788888888
Q ss_pred C--CCeEEEEccChHHHHHHhhccHHHHhccccEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhcccc
Q 003088 421 R--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498 (849)
Q Consensus 421 ~--~~i~vI~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~~ 498 (849)
+ ..+++|++++... .+.+.+.+||..++|.+|+.++....|+.+++ ..++.++++++..++..+++.+
T Consensus 142 ep~~~t~~Il~t~~~~-----kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~----~egi~i~~~Al~~ia~~s~Gdl- 211 (504)
T PRK14963 142 EPPEHVIFILATTEPE-----KMPPTILSRTQHFRFRRLTEEEIAGKLRRLLE----AEGREAEPEALQLVARLADGAM- 211 (504)
T ss_pred hCCCCEEEEEEcCChh-----hCChHHhcceEEEEecCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHcCCCH-
Confidence 6 4567777777654 67899999999999999999999999988877 6689999999999999998755
Q ss_pred cCcchhhHHHHHHHHhh
Q 003088 499 DRYLPDKAIDLVDEAGS 515 (849)
Q Consensus 499 ~r~~p~~ai~ll~~a~~ 515 (849)
.+++..++.++.
T Consensus 212 -----R~aln~Lekl~~ 223 (504)
T PRK14963 212 -----RDAESLLERLLA 223 (504)
T ss_pred -----HHHHHHHHHHHh
Confidence 477788877654
No 92
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.70 E-value=5.5e-17 Score=186.77 Aligned_cols=181 Identities=20% Similarity=0.276 Sum_probs=142.8
Q ss_pred ccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeecccccccccccccc
Q 003088 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLI 708 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~ 708 (849)
+.++|++.+++.+...+...... ..+|||+|++||||+++|++||+...+.+.||+.+||..+.+....+.||
T Consensus 212 ~~iiG~S~~m~~~~~~i~~~A~~-------~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~lleseLF 284 (526)
T TIGR02329 212 DDLLGASAPMEQVRALVRLYARS-------DATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESLLEAELF 284 (526)
T ss_pred hheeeCCHHHHHHHHHHHHHhCC-------CCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhHHHHHhc
Confidence 56999999999999998764322 12499999999999999999999887788999999999998877778899
Q ss_pred CCCCCc-cccccCcchhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCchhhh
Q 003088 709 GSPPGY-VGYEEGGLLTEAIRRRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIA 787 (849)
Q Consensus 709 g~~~g~-vg~~~~~~l~~~i~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~ 787 (849)
|...|. .|... +.-.+.+..+.+|+||||||+.+++.+|..|+++|+++.+...++......++++|++||.+...+.
T Consensus 285 G~~~gaftga~~-~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~~r~g~~~~~~~dvRiIaat~~~l~~~v 363 (526)
T TIGR02329 285 GYEEGAFTGARR-GGRTGLIEAAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHCALTTAV 363 (526)
T ss_pred CCcccccccccc-cccccchhhcCCceEEecChHhCCHHHHHHHHHHHhcCcEEecCCCceeeecceEEeccCCCHHHHh
Confidence 975543 23211 1123455567789999999999999999999999999998876665555568999999999877655
Q ss_pred cccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccc-cEEEcCCCCH--HHHccc
Q 003088 788 KGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRID-EVVVFRSLEK--AQVCQL 846 (849)
Q Consensus 788 ~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d-~~i~f~pl~~--~~~~~I 846 (849)
..+. |+++|++||+ ..|..|||.+ +|+..+
T Consensus 364 ~~g~-----------------------------fr~dL~~rL~~~~I~lPPLReR~eDI~~L 396 (526)
T TIGR02329 364 QQGR-----------------------------FRRDLFYRLSILRIALPPLRERPGDILPL 396 (526)
T ss_pred hhcc-----------------------------hhHHHHHhcCCcEEeCCCchhchhHHHHH
Confidence 4443 8999999997 5788888873 455443
No 93
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.70 E-value=1.8e-16 Score=184.24 Aligned_cols=214 Identities=21% Similarity=0.264 Sum_probs=152.5
Q ss_pred hhhhhHHHHhhcCCCCccccHHHHHHHHHHHhcCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehh
Q 003088 276 FCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMG 355 (849)
Q Consensus 276 ~~~~l~~~~~~~~l~~iiG~~~~i~~l~~~l~~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~ 355 (849)
...+|.+++||..|++++|++..++.+...+......++||+||||||||++|+++++...+........+..++.+|+.
T Consensus 51 ~~~~~~~~~rp~~f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~ 130 (531)
T TIGR02902 51 LTEPLSEKTRPKSFDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDAT 130 (531)
T ss_pred hcchHHHhhCcCCHHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccc
Confidence 45699999999999999999999999998888888889999999999999999999887543221111224567777764
Q ss_pred hhhccccc-----cchHHHHH-------------HHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhh
Q 003088 356 LLMAGAKE-----RGELEARV-------------TTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKP 417 (849)
Q Consensus 356 ~~~~~~~~-----~g~~e~~l-------------~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~ 417 (849)
......+. .+....-+ ......+....+++|||||+|.| ..+.++.|+.
T Consensus 131 ~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L-------------~~~~q~~LL~ 197 (531)
T TIGR02902 131 TARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGEL-------------HPVQMNKLLK 197 (531)
T ss_pred cccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhC-------------CHHHHHHHHH
Confidence 31100000 00000000 00001223345679999999999 5667888877
Q ss_pred hhcCC------------------------------CeEEEEccChHHHHHHhhccHHHHhccccEEecCCCHHHHHHHHH
Q 003088 418 SLGRG------------------------------ELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILL 467 (849)
Q Consensus 418 ~le~~------------------------------~i~vI~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL~ 467 (849)
+++.+ ++++|++|+... ..+++++++||..|.|++++.++..+|++
T Consensus 198 ~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p----~~L~paLrsR~~~I~f~pL~~eei~~Il~ 273 (531)
T TIGR02902 198 VLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNP----EEIPPALRSRCVEIFFRPLLDEEIKEIAK 273 (531)
T ss_pred HHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCc----ccCChHHhhhhheeeCCCCCHHHHHHHHH
Confidence 77642 247787777653 27899999999999999999999999999
Q ss_pred HHHHHHHhhcCCccCHHHHHHHHHhhhcccccCcchhhHHHHHHHHhhHH
Q 003088 468 GLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRA 517 (849)
Q Consensus 468 ~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~~~r~~p~~ai~ll~~a~~~~ 517 (849)
..++ ..++.+++++++.+..++. -...++.+++.|+..+
T Consensus 274 ~~a~----k~~i~is~~al~~I~~y~~-------n~Rel~nll~~Aa~~A 312 (531)
T TIGR02902 274 NAAE----KIGINLEKHALELIVKYAS-------NGREAVNIVQLAAGIA 312 (531)
T ss_pred HHHH----HcCCCcCHHHHHHHHHhhh-------hHHHHHHHHHHHHHHH
Confidence 8877 4568899999987766543 1357788888887654
No 94
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.70 E-value=3.3e-16 Score=175.02 Aligned_cols=200 Identities=24% Similarity=0.290 Sum_probs=144.4
Q ss_pred CCCCccccHHHHHHHHHHHhc-------------CCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeeh
Q 003088 288 LIDPVIGRETEIQRIIQILCR-------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM 354 (849)
Q Consensus 288 ~l~~iiG~~~~i~~l~~~l~~-------------~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~ 354 (849)
.++++.|.+++++.+.+.+.. ..+.++||+||||||||++|+++|..+ +..++.+..
T Consensus 120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l----------~~~~~~v~~ 189 (364)
T TIGR01242 120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET----------NATFIRVVG 189 (364)
T ss_pred CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhC----------CCCEEecch
Confidence 467899999999999886632 124579999999999999999999988 445555555
Q ss_pred hhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhh---c----CCCeEEE
Q 003088 355 GLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL---G----RGELQCI 427 (849)
Q Consensus 355 ~~~~~~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~l---e----~~~i~vI 427 (849)
..+. .++.|+....++.+++.++...++||||||+|.+......... ++....+..+..++ + .+++.+|
T Consensus 190 ~~l~--~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~--~~~~~~~~~l~~ll~~ld~~~~~~~v~vI 265 (364)
T TIGR01242 190 SELV--RKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGT--SGDREVQRTLMQLLAELDGFDPRGNVKVI 265 (364)
T ss_pred HHHH--HHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCC--CccHHHHHHHHHHHHHhhCCCCCCCEEEE
Confidence 4444 3456777888899999888888899999999999754332111 12333344443333 2 4679999
Q ss_pred EccChHHHHHHhhccHHHHh--ccc-cEEecCCCHHHHHHHHHHHHHHHHhhcCCccCH-HHHHHHHHhhhcccccCcch
Q 003088 428 ASTTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTL-EAINAAVHLSARYISDRYLP 503 (849)
Q Consensus 428 ~at~~~~~~~~~~~d~al~~--Rf~-~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~-~~l~~~a~ls~~~~~~r~~p 503 (849)
+|||..+ .+++++.+ ||. .|.|+.|+.++|.+||+...... .+.+ ..+..++..+.+|. +
T Consensus 266 ~ttn~~~-----~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~------~l~~~~~~~~la~~t~g~s-----g 329 (364)
T TIGR01242 266 AATNRPD-----ILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKM------KLAEDVDLEAIAKMTEGAS-----G 329 (364)
T ss_pred EecCChh-----hCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcC------CCCccCCHHHHHHHcCCCC-----H
Confidence 9999886 78999987 887 69999999999999998766532 2222 23566777776653 4
Q ss_pred hhHHHHHHHHhhHH
Q 003088 504 DKAIDLVDEAGSRA 517 (849)
Q Consensus 504 ~~ai~ll~~a~~~~ 517 (849)
.+...++.+|+..+
T Consensus 330 ~dl~~l~~~A~~~a 343 (364)
T TIGR01242 330 ADLKAICTEAGMFA 343 (364)
T ss_pred HHHHHHHHHHHHHH
Confidence 56667777776655
No 95
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.70 E-value=3.2e-16 Score=183.61 Aligned_cols=203 Identities=18% Similarity=0.182 Sum_probs=156.5
Q ss_pred hhHHHHhhcCCCCccccHHHHHHHHHHHhcCCCCCC-eEeCCCCChHHHHHHHHHHHhhhCCCCc--ccc----------
Q 003088 279 DLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP-ILLGESGVGKTAIAEGLAIRIVQAEVPV--FLL---------- 345 (849)
Q Consensus 279 ~l~~~~~~~~l~~iiG~~~~i~~l~~~l~~~~~~ni-LL~GppGtGKT~la~~la~~l~~~~~p~--~~~---------- 345 (849)
.|.++|||..|+++||+++.++.|...+...+..|. ||+||+|+|||++|+.+|+.+.+...+. ...
T Consensus 5 ~l~~k~RP~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~ 84 (576)
T PRK14965 5 VLARKYRPQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITE 84 (576)
T ss_pred HHHHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhc
Confidence 478999999999999999999999999988777775 8999999999999999999997543211 000
Q ss_pred --CCeEEEeehhhhhccccccchHHHHHHHHHHHHHh----cCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhh
Q 003088 346 --SKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL 419 (849)
Q Consensus 346 --~~~~~~l~~~~~~~~~~~~g~~e~~l~~l~~~~~~----~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~l 419 (849)
...++.+|.. ...+ .+.++.+.+.+.. +...|+||||+|.| +..++|.|+.+|
T Consensus 85 g~~~d~~eid~~------s~~~--v~~ir~l~~~~~~~p~~~~~KVvIIdev~~L-------------t~~a~naLLk~L 143 (576)
T PRK14965 85 GRSVDVFEIDGA------SNTG--VDDIRELRENVKYLPSRSRYKIFIIDEVHML-------------STNAFNALLKTL 143 (576)
T ss_pred CCCCCeeeeecc------CccC--HHHHHHHHHHHHhccccCCceEEEEEChhhC-------------CHHHHHHHHHHH
Confidence 1123333221 1111 2335566555542 34569999999999 456789999999
Q ss_pred cC--CCeEEEEccChHHHHHHhhccHHHHhccccEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhccc
Q 003088 420 GR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497 (849)
Q Consensus 420 e~--~~i~vI~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~ 497 (849)
|. +.+++|++||... .+.+.+++||+.+.|..++.++....|..+++ ..++.++++++..++..+++-+
T Consensus 144 Eepp~~~~fIl~t~~~~-----kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~----~egi~i~~~al~~la~~a~G~l 214 (576)
T PRK14965 144 EEPPPHVKFIFATTEPH-----KVPITILSRCQRFDFRRIPLQKIVDRLRYIAD----QEGISISDAALALVARKGDGSM 214 (576)
T ss_pred HcCCCCeEEEEEeCChh-----hhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHH----HhCCCCCHHHHHHHHHHcCCCH
Confidence 96 4688888888765 67789999999999999999999999988777 5689999999999999998754
Q ss_pred ccCcchhhHHHHHHHHhhHH
Q 003088 498 SDRYLPDKAIDLVDEAGSRA 517 (849)
Q Consensus 498 ~~r~~p~~ai~ll~~a~~~~ 517 (849)
.+++++++.+++..
T Consensus 215 ------r~al~~Ldqliay~ 228 (576)
T PRK14965 215 ------RDSLSTLDQVLAFC 228 (576)
T ss_pred ------HHHHHHHHHHHHhc
Confidence 47888888776553
No 96
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.69 E-value=4.7e-16 Score=170.85 Aligned_cols=186 Identities=16% Similarity=0.213 Sum_probs=138.9
Q ss_pred hhhHHHHhhcCCCCccccHHHHHHHHHHHhcCCCCCCeE-eCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhh
Q 003088 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPIL-LGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGL 356 (849)
Q Consensus 278 ~~l~~~~~~~~l~~iiG~~~~i~~l~~~l~~~~~~niLL-~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~ 356 (849)
..|+++|||..|++++|+++..+.+..++.....+|++| +||||+|||++|+++++.+ +..++.++...
T Consensus 9 ~~w~~kyrP~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~----------~~~~~~i~~~~ 78 (316)
T PHA02544 9 FMWEQKYRPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV----------GAEVLFVNGSD 78 (316)
T ss_pred CcceeccCCCcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh----------CccceEeccCc
Confidence 468999999999999999999999999998777777777 8999999999999999987 33445555433
Q ss_pred hhccccccchHHHHHHHHHHHHHh-cCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcC--CCeEEEEccChH
Q 003088 357 LMAGAKERGELEARVTTLISEIQK-SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--GELQCIASTTQD 433 (849)
Q Consensus 357 ~~~~~~~~g~~e~~l~~l~~~~~~-~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~--~~i~vI~at~~~ 433 (849)
+ + ...+...+......... .++.||||||+|.+. ..++++.|+.+++. +...+|++++..
T Consensus 79 ---~-~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~------------~~~~~~~L~~~le~~~~~~~~Ilt~n~~ 141 (316)
T PHA02544 79 ---C-R-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLG------------LADAQRHLRSFMEAYSKNCSFIITANNK 141 (316)
T ss_pred ---c-c-HHHHHHHHHHHHHhhcccCCCeEEEEECccccc------------CHHHHHHHHHHHHhcCCCceEEEEcCCh
Confidence 1 1 12222223333222211 346799999999881 23456777777774 567888888866
Q ss_pred HHHHHhhccHHHHhccccEEecCCCHHHHHHHHHHHHHHHH---hhcCCccCHHHHHHHHHhhhc
Q 003088 434 EHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYE---AHHNCKFTLEAINAAVHLSAR 495 (849)
Q Consensus 434 ~~~~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL~~~~~~~~---~~~~~~i~~~~l~~~a~ls~~ 495 (849)
. .+.+++++||..+.|+.|+.+++.+++..+..++. ...++.++++++..++..+.+
T Consensus 142 ~-----~l~~~l~sR~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~~~ 201 (316)
T PHA02544 142 N-----GIIEPLRSRCRVIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNFP 201 (316)
T ss_pred h-----hchHHHHhhceEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCC
Confidence 4 67899999999999999999999999887655543 246889999998888765543
No 97
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=1.9e-16 Score=157.33 Aligned_cols=148 Identities=20% Similarity=0.302 Sum_probs=121.0
Q ss_pred cCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEE
Q 003088 308 RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILF 387 (849)
Q Consensus 308 ~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~~~~~~g~~e~~l~~l~~~~~~~~~~ILf 387 (849)
...+..+|||||||||||++|+++|+.. ...++.+.-+.++ .+|.|+--..++.+|+.++++.|+|+|
T Consensus 186 idpprgvllygppg~gktml~kava~~t----------~a~firvvgsefv--qkylgegprmvrdvfrlakenapsiif 253 (408)
T KOG0727|consen 186 IDPPRGVLLYGPPGTGKTMLAKAVANHT----------TAAFIRVVGSEFV--QKYLGEGPRMVRDVFRLAKENAPSIIF 253 (408)
T ss_pred CCCCcceEEeCCCCCcHHHHHHHHhhcc----------chheeeeccHHHH--HHHhccCcHHHHHHHHHHhccCCcEEE
Confidence 3467899999999999999999999876 5566777666666 577888888899999999999999999
Q ss_pred EcCcchhhhCCCCCCCCCCccHHHHHHHhhhhc-------CCCeEEEEccChHHHHHHhhccHHHHh--ccc-cEEecCC
Q 003088 388 IDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG-------RGELQCIASTTQDEHRTQFEKDKALAR--RFQ-PVLISEP 457 (849)
Q Consensus 388 IDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le-------~~~i~vI~at~~~~~~~~~~~d~al~~--Rf~-~i~~~~p 457 (849)
|||+|.+.-.+-... .+...+++.+|..+|. ..++.+|.+||..+ .+||+|.| |++ +|+||.|
T Consensus 254 ideidaiatkrfdaq--tgadrevqril~ellnqmdgfdq~~nvkvimatnrad-----tldpallrpgrldrkiefplp 326 (408)
T KOG0727|consen 254 IDEIDAIATKRFDAQ--TGADREVQRILIELLNQMDGFDQTTNVKVIMATNRAD-----TLDPALLRPGRLDRKIEFPLP 326 (408)
T ss_pred eehhhhHhhhhcccc--ccccHHHHHHHHHHHHhccCcCcccceEEEEecCccc-----ccCHhhcCCccccccccCCCC
Confidence 999999975332211 1346778888877764 35689999999988 89999999 997 6999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q 003088 458 SQEDAVRILLGLREKYE 474 (849)
Q Consensus 458 s~~e~~~iL~~~~~~~~ 474 (849)
+..++.-++..+..++.
T Consensus 327 drrqkrlvf~titskm~ 343 (408)
T KOG0727|consen 327 DRRQKRLVFSTITSKMN 343 (408)
T ss_pred chhhhhhhHHhhhhccc
Confidence 99999999988877553
No 98
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.69 E-value=1.4e-16 Score=179.54 Aligned_cols=203 Identities=20% Similarity=0.241 Sum_probs=162.1
Q ss_pred hhHHHHhhcCCCCccccHHHHHHHHHHHhcCCCCC-CeEeCCCCChHHHHHHHHHHHhhhCCCCc--cccC---------
Q 003088 279 DLTARASEELIDPVIGRETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEVPV--FLLS--------- 346 (849)
Q Consensus 279 ~l~~~~~~~~l~~iiG~~~~i~~l~~~l~~~~~~n-iLL~GppGtGKT~la~~la~~l~~~~~p~--~~~~--------- 346 (849)
.+..+|||..|++++|++..++.|...+...+..| .+|.||-|||||++|+.+|+.+++...+. .+..
T Consensus 5 ~L~rKyRP~~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~ 84 (515)
T COG2812 5 VLARKYRPKTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINE 84 (515)
T ss_pred HHHHHhCcccHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhc
Confidence 57789999999999999999999999987766655 48999999999999999999998764221 1111
Q ss_pred ---CeEEEeehhhhhccccccchHHHHHHHHHHHHHh----cCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhh
Q 003088 347 ---KRIMSLDMGLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL 419 (849)
Q Consensus 347 ---~~~~~l~~~~~~~~~~~~g~~e~~l~~l~~~~~~----~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~l 419 (849)
..++++|..+ .. ..+.++.+.+++.- ++..|.+|||+|.| +..+.|.|+..|
T Consensus 85 g~~~DviEiDaAS------n~--gVddiR~i~e~v~y~P~~~ryKVyiIDEvHML-------------S~~afNALLKTL 143 (515)
T COG2812 85 GSLIDVIEIDAAS------NT--GVDDIREIIEKVNYAPSEGRYKVYIIDEVHML-------------SKQAFNALLKTL 143 (515)
T ss_pred CCcccchhhhhhh------cc--ChHHHHHHHHHhccCCccccceEEEEecHHhh-------------hHHHHHHHhccc
Confidence 1222222211 11 23345666666643 45679999999999 567889999999
Q ss_pred cCC--CeEEEEccChHHHHHHhhccHHHHhccccEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhccc
Q 003088 420 GRG--ELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497 (849)
Q Consensus 420 e~~--~i~vI~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~ 497 (849)
|.+ .+.+|.|||... .+.+.+.+||+.+.|...+.++....|..++. .+++.++++++..+++.+++-+
T Consensus 144 EEPP~hV~FIlATTe~~-----Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~----~E~I~~e~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 144 EEPPSHVKFILATTEPQ-----KIPNTILSRCQRFDFKRLDLEEIAKHLAAILD----KEGINIEEDALSLIARAAEGSL 214 (515)
T ss_pred ccCccCeEEEEecCCcC-----cCchhhhhccccccccCCCHHHHHHHHHHHHH----hcCCccCHHHHHHHHHHcCCCh
Confidence 864 689999999887 88999999999999999999999999988887 8899999999999999999865
Q ss_pred ccCcchhhHHHHHHHHhhHH
Q 003088 498 SDRYLPDKAIDLVDEAGSRA 517 (849)
Q Consensus 498 ~~r~~p~~ai~ll~~a~~~~ 517 (849)
. ++..++|.+.+..
T Consensus 215 R------DalslLDq~i~~~ 228 (515)
T COG2812 215 R------DALSLLDQAIAFG 228 (515)
T ss_pred h------hHHHHHHHHHHcc
Confidence 4 6788999987764
No 99
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.69 E-value=2.8e-15 Score=163.85 Aligned_cols=180 Identities=21% Similarity=0.271 Sum_probs=128.8
Q ss_pred CCCCccccHHHHHHHHHHHh-----cCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhcccc
Q 003088 288 LIDPVIGRETEIQRIIQILC-----RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAK 362 (849)
Q Consensus 288 ~l~~iiG~~~~i~~l~~~l~-----~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~~~~ 362 (849)
+|+++||++++++.+..++. ....++++|+||||||||++|+.+|+.+. ..+...+.....
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~----------~~~~~~~~~~~~---- 67 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMG----------VNLKITSGPALE---- 67 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhC----------CCEEEeccchhc----
Confidence 57899999999999888775 23456899999999999999999999882 223222221111
Q ss_pred ccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcC--------------------C
Q 003088 363 ERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--------------------G 422 (849)
Q Consensus 363 ~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~--------------------~ 422 (849)
..+++ ...+..+ ..+.||||||+|.+. .+.++.|...+++ .
T Consensus 68 ~~~~l----~~~l~~~--~~~~vl~iDEi~~l~-------------~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~ 128 (305)
T TIGR00635 68 KPGDL----AAILTNL--EEGDVLFIDEIHRLS-------------PAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLP 128 (305)
T ss_pred CchhH----HHHHHhc--ccCCEEEEehHhhhC-------------HHHHHHhhHHHhhhheeeeeccCccccceeecCC
Confidence 11222 2222322 235699999999993 2334455555432 2
Q ss_pred CeEEEEccChHHHHHHhhccHHHHhccc-cEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhcccccCc
Q 003088 423 ELQCIASTTQDEHRTQFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRY 501 (849)
Q Consensus 423 ~i~vI~at~~~~~~~~~~~d~al~~Rf~-~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~~~r~ 501 (849)
.+.+|++||... .+++++++||. .+.+++|+.++..++++..+. ..++.++++++..++..+.++.
T Consensus 129 ~~~li~~t~~~~-----~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~----~~~~~~~~~al~~ia~~~~G~p---- 195 (305)
T TIGR00635 129 PFTLVGATTRAG-----MLTSPLRDRFGIILRLEFYTVEELAEIVSRSAG----LLNVEIEPEAALEIARRSRGTP---- 195 (305)
T ss_pred CeEEEEecCCcc-----ccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHH----HhCCCcCHHHHHHHHHHhCCCc----
Confidence 267888888875 67899999996 589999999999999987776 4578999999999999888754
Q ss_pred chhhHHHHHHHHhh
Q 003088 502 LPDKAIDLVDEAGS 515 (849)
Q Consensus 502 ~p~~ai~ll~~a~~ 515 (849)
..+..+++.+..
T Consensus 196 --R~~~~ll~~~~~ 207 (305)
T TIGR00635 196 --RIANRLLRRVRD 207 (305)
T ss_pred --chHHHHHHHHHH
Confidence 456666665543
No 100
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.69 E-value=1.9e-16 Score=170.08 Aligned_cols=176 Identities=22% Similarity=0.340 Sum_probs=126.7
Q ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHH-------HhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCC---
Q 003088 617 RMLLVGLEEQLKKRVIGQDEAVAAISRAVK-------RSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGS--- 686 (849)
Q Consensus 617 ~~~~~~l~~~l~~~i~Gq~~~i~~l~~~l~-------~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~--- 686 (849)
...++++.+.|...++|.++++++|...+. +.+.|... ..|..+++|+||||||||++|+++++.++..
T Consensus 10 ~~~~~~~~~~l~~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~-~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~ 88 (284)
T TIGR02880 10 ASGITEVLDQLDRELIGLKPVKTRIREIAALLLVERLRQRLGLAS-AAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYV 88 (284)
T ss_pred hccHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCc-CCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCc
Confidence 344556667777789999999998876532 22445553 2344579999999999999999999887432
Q ss_pred -CCceeEeeccccccccccccccCCCCCccccccCcchhHHHHhCCCeEEEEeCcccc---------CHHHHHHHHHHhh
Q 003088 687 -ESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRRRPFTLLLLDEIEKA---------HPDIFNILLQVFE 756 (849)
Q Consensus 687 -~~~~i~i~~~~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~i~~~~~~vl~lDEid~l---------~~~~~~~Ll~~le 756 (849)
..+++.++++++.. . |+|... ..+.+.+.++.++||||||++.+ ..++++.|++.|+
T Consensus 89 ~~~~~v~v~~~~l~~-----~-------~~g~~~-~~~~~~~~~a~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le 155 (284)
T TIGR02880 89 RKGHLVSVTRDDLVG-----Q-------YIGHTA-PKTKEILKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVME 155 (284)
T ss_pred ccceEEEecHHHHhH-----h-------hcccch-HHHHHHHHHccCcEEEEechhhhccCCCccchHHHHHHHHHHHHh
Confidence 23688888765432 2 344332 23456677777899999999977 4668999999998
Q ss_pred cCeeecCCCceeecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcC
Q 003088 757 DGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFR 836 (849)
Q Consensus 757 ~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~ 836 (849)
++. .++++|++++..... .. -.++|+|.+||+..|.|+
T Consensus 156 ~~~-----------~~~~vI~a~~~~~~~-------------------------~~------~~~np~L~sR~~~~i~fp 193 (284)
T TIGR02880 156 NQR-----------DDLVVILAGYKDRMD-------------------------SF------FESNPGFSSRVAHHVDFP 193 (284)
T ss_pred cCC-----------CCEEEEEeCCcHHHH-------------------------HH------HhhCHHHHhhCCcEEEeC
Confidence 732 477888887753110 00 015899999999999999
Q ss_pred CCCHHHHccccC
Q 003088 837 SLEKAQVCQLPL 848 (849)
Q Consensus 837 pl~~~~~~~I~~ 848 (849)
||+.+++..|++
T Consensus 194 ~l~~edl~~I~~ 205 (284)
T TIGR02880 194 DYSEAELLVIAG 205 (284)
T ss_pred CcCHHHHHHHHH
Confidence 999999998864
No 101
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.69 E-value=8.2e-16 Score=170.52 Aligned_cols=202 Identities=16% Similarity=0.255 Sum_probs=143.8
Q ss_pred hhHHHHhhcCCCCccccHHHHHHHHHHHhcCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhh
Q 003088 279 DLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM 358 (849)
Q Consensus 279 ~l~~~~~~~~l~~iiG~~~~i~~l~~~l~~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~ 358 (849)
.|+++|+|..|++++|+++.++.+..++..+..++++|+||||||||++|+++++++..... +..++.+++..+.
T Consensus 4 ~w~~ky~P~~~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~-----~~~~~~i~~~~~~ 78 (337)
T PRK12402 4 LWTEKYRPALLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDPW-----ENNFTEFNVADFF 78 (337)
T ss_pred chHHhhCCCcHHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCccc-----ccceEEechhhhh
Confidence 58999999999999999999999999998877779999999999999999999999854321 1233444544332
Q ss_pred cccc--------c---cc-------hHHHHHHHHHHHHHh-----cCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHH
Q 003088 359 AGAK--------E---RG-------ELEARVTTLISEIQK-----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLL 415 (849)
Q Consensus 359 ~~~~--------~---~g-------~~e~~l~~l~~~~~~-----~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L 415 (849)
.... . .+ .....++.+++.... ....+|||||+|.+ ..+.++.|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l-------------~~~~~~~L 145 (337)
T PRK12402 79 DQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEAL-------------REDAQQAL 145 (337)
T ss_pred hcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccC-------------CHHHHHHH
Confidence 1100 0 00 012234444433332 23469999999998 23456677
Q ss_pred hhhhcC--CCeEEEEccChHHHHHHhhccHHHHhccccEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhh
Q 003088 416 KPSLGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLS 493 (849)
Q Consensus 416 ~~~le~--~~i~vI~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls 493 (849)
..+++. +..++|.+++... .+.+.|++|+..+.+.+|+.++..++++..+. ..++.++++++..++..+
T Consensus 146 ~~~le~~~~~~~~Il~~~~~~-----~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~----~~~~~~~~~al~~l~~~~ 216 (337)
T PRK12402 146 RRIMEQYSRTCRFIIATRQPS-----KLIPPIRSRCLPLFFRAPTDDELVDVLESIAE----AEGVDYDDDGLELIAYYA 216 (337)
T ss_pred HHHHHhccCCCeEEEEeCChh-----hCchhhcCCceEEEecCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHc
Confidence 777763 3456666666543 45678999999999999999999999988776 568889999999999887
Q ss_pred hcccccCcchhhHHHHHHHH
Q 003088 494 ARYISDRYLPDKAIDLVDEA 513 (849)
Q Consensus 494 ~~~~~~r~~p~~ai~ll~~a 513 (849)
.+-+ ..++..++.+
T Consensus 217 ~gdl------r~l~~~l~~~ 230 (337)
T PRK12402 217 GGDL------RKAILTLQTA 230 (337)
T ss_pred CCCH------HHHHHHHHHH
Confidence 6533 3455555543
No 102
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.69 E-value=3.9e-14 Score=171.53 Aligned_cols=179 Identities=18% Similarity=0.257 Sum_probs=126.8
Q ss_pred CCccccHHHHHHHHHHHhcC---------CCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhc-
Q 003088 290 DPVIGRETEIQRIIQILCRR---------TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA- 359 (849)
Q Consensus 290 ~~iiG~~~~i~~l~~~l~~~---------~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~- 359 (849)
..++||++.++.+...+.+. ...++||+||+|||||++|++||+.+ ++.++.+|++.+..
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l----------~~~~~~~d~se~~~~ 523 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL----------GVHLERFDMSEYMEK 523 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh----------cCCeEEEeCchhhhc
Confidence 36899999999998877542 12357999999999999999999988 45566777655432
Q ss_pred -------c--ccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCCC-------
Q 003088 360 -------G--AKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGE------- 423 (849)
Q Consensus 360 -------~--~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~~------- 423 (849)
| ..+.|.- ....+.+.++..+.+||||||+|.+ ..++++.|++++++|.
T Consensus 524 ~~~~~lig~~~gyvg~~--~~~~l~~~~~~~p~~VvllDEieka-------------~~~~~~~Ll~~ld~g~~~d~~g~ 588 (731)
T TIGR02639 524 HTVSRLIGAPPGYVGFE--QGGLLTEAVRKHPHCVLLLDEIEKA-------------HPDIYNILLQVMDYATLTDNNGR 588 (731)
T ss_pred ccHHHHhcCCCCCcccc--hhhHHHHHHHhCCCeEEEEechhhc-------------CHHHHHHHHHhhccCeeecCCCc
Confidence 1 1122211 1123344455567789999999988 5678999999998653
Q ss_pred ------eEEEEccChHH--H----------------HH--HhhccHHHHhccc-cEEecCCCHHHHHHHHHHHHHHHHh-
Q 003088 424 ------LQCIASTTQDE--H----------------RT--QFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEA- 475 (849)
Q Consensus 424 ------i~vI~at~~~~--~----------------~~--~~~~d~al~~Rf~-~i~~~~ps~~e~~~iL~~~~~~~~~- 475 (849)
.++|+|||... + .. .....|.|..||+ .|.|.+++.++..+|++...+++..
T Consensus 589 ~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~ 668 (731)
T TIGR02639 589 KADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDELSKQ 668 (731)
T ss_pred ccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHHHH
Confidence 45888876521 0 00 0124588999997 7999999999999999987664321
Q ss_pred --hc--CCccCHHHHHHHHHhh
Q 003088 476 --HH--NCKFTLEAINAAVHLS 493 (849)
Q Consensus 476 --~~--~~~i~~~~l~~~a~ls 493 (849)
.. .+.+++++++.++...
T Consensus 669 l~~~~~~l~i~~~a~~~La~~~ 690 (731)
T TIGR02639 669 LNEKNIKLELTDDAKKYLAEKG 690 (731)
T ss_pred HHhCCCeEEeCHHHHHHHHHhC
Confidence 22 4788999999888753
No 103
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=1e-16 Score=170.54 Aligned_cols=174 Identities=23% Similarity=0.410 Sum_probs=126.8
Q ss_pred ccceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccccccCCCCCccccccCcchhHHHHh-------CCC
Q 003088 660 AAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRR-------RPF 732 (849)
Q Consensus 660 ~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~i~~-------~~~ 732 (849)
.+||+.||+|+|||.+|+.||+.+ +.||...||..+.. .||||++....+...+.. +..
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~l---dVPfaIcDcTtLTQ-----------AGYVGeDVEsvi~KLl~~A~~nVekAQq 292 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVL---DVPFAICDCTTLTQ-----------AGYVGEDVESVIQKLLQEAEYNVEKAQQ 292 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHh---CCCeEEecccchhh-----------cccccccHHHHHHHHHHHccCCHHHHhc
Confidence 479999999999999999999998 88999999998754 589998876666665544 446
Q ss_pred eEEEEeCccccC--------------HHHHHHHHHHhhcCeeecCC--------Cc--eeecCCeEEEEecCC-Cchhhh
Q 003088 733 TLLLLDEIEKAH--------------PDIFNILLQVFEDGHLTDSH--------GR--RVSFKNALIVMTSNV-GSTTIA 787 (849)
Q Consensus 733 ~vl~lDEid~l~--------------~~~~~~Ll~~le~g~~~~~~--------g~--~~~~~~~~iI~tsn~-~~~~l~ 787 (849)
|||||||+|++. ..+|..||+++|...+..++ |. .++..|+.||+..-+ +.+.+.
T Consensus 293 GIVflDEvDKi~~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I 372 (564)
T KOG0745|consen 293 GIVFLDEVDKITKKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKII 372 (564)
T ss_pred CeEEEehhhhhcccCccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHH
Confidence 899999999985 24999999999876665432 22 456778888886543 233322
Q ss_pred --cccCCccccccccCCc----------------ccHHhHHHHHHHHHHhh-CChHHhhccccEEEcCCCCHHHHcccc
Q 003088 788 --KGRHGSIGFLLEDNES----------------TSYAGMKTLVVEELKAY-FRPELLNRIDEVVVFRSLEKAQVCQLP 847 (849)
Q Consensus 788 --~~~~~~~gf~~~~~~~----------------~~~~~~~~~~~~~l~~~-~~pell~R~d~~i~f~pl~~~~~~~I~ 847 (849)
+.....+||....... .+.+-+..+...+|-.| +-|||+.||..+|+|.+|+++++..|+
T Consensus 373 ~rR~~d~slGFg~~s~~~vr~~~~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfVGRfPVlVplh~L~~~~Lv~VL 451 (564)
T KOG0745|consen 373 SRRLDDKSLGFGAPSSKGVRANMATKSGVENDAEKRDELLEKVESGDLISFGMIPEFVGRFPVLVPLHSLDEDQLVRVL 451 (564)
T ss_pred HHhhcchhcccCCCCCccchhhcccccCcchhHHHHHHHHhhccccchhhhcCcHHHhcccceEeeccccCHHHHHHHH
Confidence 2234578998652210 01111333333445555 779999999999999999999998876
No 104
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.68 E-value=1.7e-16 Score=173.91 Aligned_cols=180 Identities=23% Similarity=0.308 Sum_probs=139.0
Q ss_pred ccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeecccccccccccccc
Q 003088 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLI 708 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~ 708 (849)
+.++|.+..++.+...+...... ..+|||+|++||||+++|++||....+...+|+.+||..+.+......+|
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~-------~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~~~lf 78 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPL-------DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELF 78 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCC-------CCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHHHHHc
Confidence 56899999999999999876321 12399999999999999999998876677899999999987655556788
Q ss_pred CCCCCc-cccccCcchhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCchhhh
Q 003088 709 GSPPGY-VGYEEGGLLTEAIRRRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIA 787 (849)
Q Consensus 709 g~~~g~-vg~~~~~~l~~~i~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~ 787 (849)
|...+. .|... ...+.+..+.+|+||||||+.+++.+|..|+++|+++.+...++......+++||+||+.....+.
T Consensus 79 g~~~~~~~g~~~--~~~g~l~~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~l~~l~ 156 (326)
T PRK11608 79 GHEAGAFTGAQK--RHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMV 156 (326)
T ss_pred cccccccCCccc--ccCCchhccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchhHHHHH
Confidence 865432 23221 112345667789999999999999999999999999988765554444458999999999877665
Q ss_pred cccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccc-cEEEcCCCCH--HHHccc
Q 003088 788 KGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRID-EVVVFRSLEK--AQVCQL 846 (849)
Q Consensus 788 ~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d-~~i~f~pl~~--~~~~~I 846 (849)
..+. |+++|++||+ ..|..|||.+ +|+..+
T Consensus 157 ~~g~-----------------------------f~~dL~~~l~~~~i~lPpLReR~eDI~~L 189 (326)
T PRK11608 157 AEGK-----------------------------FRADLLDRLAFDVVQLPPLRERQSDIMLM 189 (326)
T ss_pred HcCC-----------------------------chHHHHHhcCCCEEECCChhhhhhhHHHH
Confidence 5544 8999999995 5788888873 444443
No 105
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.68 E-value=9.9e-16 Score=177.84 Aligned_cols=203 Identities=21% Similarity=0.182 Sum_probs=152.8
Q ss_pred hhhHHHHhhcCCCCccccHHHHHHHHHHHhcCCCCC-CeEeCCCCChHHHHHHHHHHHhhhCCCCcc--c----------
Q 003088 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEVPVF--L---------- 344 (849)
Q Consensus 278 ~~l~~~~~~~~l~~iiG~~~~i~~l~~~l~~~~~~n-iLL~GppGtGKT~la~~la~~l~~~~~p~~--~---------- 344 (849)
..|..+|||..|+++||++..++.|...+..++..| +||+||+|+|||++|+++|+.+.+...+.. .
T Consensus 4 ~~l~~kyRP~~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~ 83 (563)
T PRK06647 4 RGTATKRRPRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSID 83 (563)
T ss_pred HHHHHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHH
Confidence 357889999999999999999999999998877766 689999999999999999999975422211 0
Q ss_pred --cCCeEEEeehhhhhccccccchHHHHHHHHHHHHH----hcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhh
Q 003088 345 --LSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPS 418 (849)
Q Consensus 345 --~~~~~~~l~~~~~~~~~~~~g~~e~~l~~l~~~~~----~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~ 418 (849)
.+..++.++. ....+ .+.++.+.+.+. .++..|+||||+|.| +..++|.|+..
T Consensus 84 ~~~~~dv~~idg------as~~~--vddIr~l~e~~~~~p~~~~~KVvIIDEa~~L-------------s~~a~naLLK~ 142 (563)
T PRK06647 84 NDNSLDVIEIDG------ASNTS--VQDVRQIKEEIMFPPASSRYRVYIIDEVHML-------------SNSAFNALLKT 142 (563)
T ss_pred cCCCCCeEEecC------cccCC--HHHHHHHHHHHHhchhcCCCEEEEEEChhhc-------------CHHHHHHHHHh
Confidence 0112233221 11111 123444444433 245679999999999 45678889999
Q ss_pred hcC--CCeEEEEccChHHHHHHhhccHHHHhccccEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhcc
Q 003088 419 LGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496 (849)
Q Consensus 419 le~--~~i~vI~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~ 496 (849)
+++ +.+.+|++|+... .+.+++++||+.++|.+++.++..++|...+. ..++.++++++..++..+.+.
T Consensus 143 LEepp~~~vfI~~tte~~-----kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~----~egi~id~eAl~lLa~~s~Gd 213 (563)
T PRK06647 143 IEEPPPYIVFIFATTEVH-----KLPATIKSRCQHFNFRLLSLEKIYNMLKKVCL----EDQIKYEDEALKWIAYKSTGS 213 (563)
T ss_pred hccCCCCEEEEEecCChH-----HhHHHHHHhceEEEecCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHcCCC
Confidence 986 5688888887654 57789999999999999999999999988776 568899999999999988864
Q ss_pred cccCcchhhHHHHHHHHhhH
Q 003088 497 ISDRYLPDKAIDLVDEAGSR 516 (849)
Q Consensus 497 ~~~r~~p~~ai~ll~~a~~~ 516 (849)
. ..++.+++.++..
T Consensus 214 l------R~alslLdklis~ 227 (563)
T PRK06647 214 V------RDAYTLFDQVVSF 227 (563)
T ss_pred H------HHHHHHHHHHHhh
Confidence 4 4777888776543
No 106
>PRK04195 replication factor C large subunit; Provisional
Probab=99.68 E-value=4.7e-16 Score=179.77 Aligned_cols=193 Identities=16% Similarity=0.201 Sum_probs=145.4
Q ss_pred hhhHHHHhhcCCCCccccHHHHHHHHHHHhcCC----CCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEee
Q 003088 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRT----KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD 353 (849)
Q Consensus 278 ~~l~~~~~~~~l~~iiG~~~~i~~l~~~l~~~~----~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~ 353 (849)
..|+++|+|.++++++|+++.++.+..++.... .+++||+||||||||++|+++|+.+ +..++.++
T Consensus 2 ~~W~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el----------~~~~ieln 71 (482)
T PRK04195 2 MPWVEKYRPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY----------GWEVIELN 71 (482)
T ss_pred CCchhhcCCCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc----------CCCEEEEc
Confidence 479999999999999999999999999886532 5789999999999999999999998 56677766
Q ss_pred hhhhhccccccchHHHHHHHHHHHHHh------cCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCCCeEEE
Q 003088 354 MGLLMAGAKERGELEARVTTLISEIQK------SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCI 427 (849)
Q Consensus 354 ~~~~~~~~~~~g~~e~~l~~l~~~~~~------~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~~i~vI 427 (849)
.+... ....+..++..+.. ..+.||||||+|.+.+.. .....+.|..+++.....+|
T Consensus 72 asd~r--------~~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~---------d~~~~~aL~~~l~~~~~~iI 134 (482)
T PRK04195 72 ASDQR--------TADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNE---------DRGGARAILELIKKAKQPII 134 (482)
T ss_pred ccccc--------cHHHHHHHHHHhhccCcccCCCCeEEEEecCccccccc---------chhHHHHHHHHHHcCCCCEE
Confidence 54321 01123333333322 246799999999995321 22345666677777777777
Q ss_pred EccChHHHHHHhhccH-HHHhccccEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhcccccCcchhhH
Q 003088 428 ASTTQDEHRTQFEKDK-ALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKA 506 (849)
Q Consensus 428 ~at~~~~~~~~~~~d~-al~~Rf~~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~~~r~~p~~a 506 (849)
+++|... .+.+ .+++|+..|.|++|+.++...+|+.++. ..++.++++++..++..+.+.+. .+
T Consensus 135 li~n~~~-----~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~----~egi~i~~eaL~~Ia~~s~GDlR------~a 199 (482)
T PRK04195 135 LTANDPY-----DPSLRELRNACLMIEFKRLSTRSIVPVLKRICR----KEGIECDDEALKEIAERSGGDLR------SA 199 (482)
T ss_pred EeccCcc-----ccchhhHhccceEEEecCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHcCCCHH------HH
Confidence 7777653 4455 7889999999999999999999988887 67889999999999998877553 45
Q ss_pred HHHHHH
Q 003088 507 IDLVDE 512 (849)
Q Consensus 507 i~ll~~ 512 (849)
+..+..
T Consensus 200 in~Lq~ 205 (482)
T PRK04195 200 INDLQA 205 (482)
T ss_pred HHHHHH
Confidence 555544
No 107
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=99.68 E-value=1.6e-16 Score=165.13 Aligned_cols=170 Identities=21% Similarity=0.329 Sum_probs=143.6
Q ss_pred hccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccccc
Q 003088 628 KKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKL 707 (849)
Q Consensus 628 ~~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l 707 (849)
++.+++.+..++.+....++... +. ..+|+.|++||||..+|++.|..+.+...||+.++|..+.+....+.+
T Consensus 203 F~~~v~~S~~mk~~v~qA~k~Am-lD------APLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~~aEsEl 275 (511)
T COG3283 203 FEQIVAVSPKMKHVVEQAQKLAM-LD------APLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPEDAAESEL 275 (511)
T ss_pred hHHHhhccHHHHHHHHHHHHhhc-cC------CCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCchhHhHHHH
Confidence 36688999998888776665322 11 239999999999999999999999899999999999999999999999
Q ss_pred cCCCCCccccccCcchhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCchhhh
Q 003088 708 IGSPPGYVGYEEGGLLTEAIRRRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIA 787 (849)
Q Consensus 708 ~g~~~g~vg~~~~~~l~~~i~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~ 787 (849)
||..+|.-|+ .+.+..+.+|.+|+|||..++|..|..||+++.+|.|..-++..-.+-|++||++|......+.
T Consensus 276 FG~apg~~gk------~GffE~AngGTVlLDeIgEmSp~lQaKLLRFL~DGtFRRVGee~Ev~vdVRVIcatq~nL~~lv 349 (511)
T COG3283 276 FGHAPGDEGK------KGFFEQANGGTVLLDEIGEMSPRLQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQVNLVELV 349 (511)
T ss_pred hcCCCCCCCc------cchhhhccCCeEEeehhhhcCHHHHHHHHHHhcCCceeecCCcceEEEEEEEEecccccHHHHH
Confidence 9998774332 2456677899999999999999999999999999999987776666779999999999988888
Q ss_pred cccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhcccc-EEEcCCCC
Q 003088 788 KGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDE-VVVFRSLE 839 (849)
Q Consensus 788 ~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~-~i~f~pl~ 839 (849)
+.+. |+.+|++|++. .+..|||.
T Consensus 350 ~~g~-----------------------------fReDLfyRLNVLtl~~PpLR 373 (511)
T COG3283 350 QKGK-----------------------------FREDLFYRLNVLTLNLPPLR 373 (511)
T ss_pred hcCc-----------------------------hHHHHHHHhheeeecCCccc
Confidence 7765 89999999984 66777776
No 108
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=3.4e-16 Score=156.11 Aligned_cols=199 Identities=20% Similarity=0.277 Sum_probs=142.6
Q ss_pred CCCccccHHHHHHHHHHH-------------hcCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehh
Q 003088 289 IDPVIGRETEIQRIIQIL-------------CRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMG 355 (849)
Q Consensus 289 l~~iiG~~~~i~~l~~~l-------------~~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~ 355 (849)
..++-|.+.+++.+++.+ ..+.+..+|+|||||||||.+|++-|... +..++.+...
T Consensus 170 YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT----------~aTFLKLAgP 239 (424)
T KOG0652|consen 170 YSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQT----------NATFLKLAGP 239 (424)
T ss_pred ccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhc----------cchHHHhcch
Confidence 568899999999998865 22456789999999999999999988776 3333333323
Q ss_pred hhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhc-------CCCeEEEE
Q 003088 356 LLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG-------RGELQCIA 428 (849)
Q Consensus 356 ~~~~~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le-------~~~i~vI~ 428 (849)
.++ ..+.|+-...++..|..++...|+|+||||+|.+-..+ ++ +.+.+..+++..++.+|. ..++.+|+
T Consensus 240 QLV--QMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKR-fD-Sek~GDREVQRTMLELLNQLDGFss~~~vKviA 315 (424)
T KOG0652|consen 240 QLV--QMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKR-FD-SEKAGDREVQRTMLELLNQLDGFSSDDRVKVIA 315 (424)
T ss_pred HHH--hhhhcchHHHHHHHHHHhhccCCeEEEEechhhhcccc-cc-ccccccHHHHHHHHHHHHhhcCCCCccceEEEe
Confidence 333 34677778889999999999999999999999993322 11 123467778777766664 56799999
Q ss_pred ccChHHHHHHhhccHHHHh--ccc-cEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhcccccCcchhh
Q 003088 429 STTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDK 505 (849)
Q Consensus 429 at~~~~~~~~~~~d~al~~--Rf~-~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~~~r~~p~~ 505 (849)
+||..+ -+||+|.| |++ +|+||-|+.+.|..|++-...++..+..++ .+.+++-++.|- ...
T Consensus 316 ATNRvD-----iLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvN-----feELaRsTddFN-----GAQ 380 (424)
T KOG0652|consen 316 ATNRVD-----ILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVN-----FEELARSTDDFN-----GAQ 380 (424)
T ss_pred eccccc-----ccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCC-----HHHHhhcccccC-----chh
Confidence 999987 78999998 887 699999999999999987766543333333 344555555443 233
Q ss_pred HHHHHHHHhhH
Q 003088 506 AIDLVDEAGSR 516 (849)
Q Consensus 506 ai~ll~~a~~~ 516 (849)
...++-+|+..
T Consensus 381 cKAVcVEAGMi 391 (424)
T KOG0652|consen 381 CKAVCVEAGMI 391 (424)
T ss_pred heeeehhhhHH
Confidence 33444455443
No 109
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.67 E-value=1.7e-16 Score=186.28 Aligned_cols=181 Identities=20% Similarity=0.298 Sum_probs=141.2
Q ss_pred ccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeecccccccccccccc
Q 003088 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLI 708 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~ 708 (849)
+.++|++.+++.+.+.+...... ..+|||+||+||||+++|++||....+.+.+|+.+||..+.+....+.+|
T Consensus 196 ~~liG~s~~~~~~~~~~~~~a~~-------~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~~~~~~lf 268 (534)
T TIGR01817 196 DGIIGKSPAMRQVVDQARVVARS-------NSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETLLESELF 268 (534)
T ss_pred CceEECCHHHHHHHHHHHHHhCc-------CCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHHHHHHHHc
Confidence 67999999999999988876321 12499999999999999999999987778899999999987766677888
Q ss_pred CCCCCc-cccccCcchhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCchhhh
Q 003088 709 GSPPGY-VGYEEGGLLTEAIRRRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIA 787 (849)
Q Consensus 709 g~~~g~-vg~~~~~~l~~~i~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~ 787 (849)
|...|. .|... .-.+.+..+.+|+||||||+.+++.+|..|+++|+++.+...++......++++|+||+.+...+.
T Consensus 269 g~~~~~~~~~~~--~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~~l~~~~ 346 (534)
T TIGR01817 269 GHEKGAFTGAIA--QRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRDLEEAV 346 (534)
T ss_pred CCCCCccCCCCc--CCCCcccccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCCCHHHHH
Confidence 875442 22211 112234456789999999999999999999999999998876655444568999999998776554
Q ss_pred cccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhcccc-EEEcCCCC--HHHHcccc
Q 003088 788 KGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDE-VVVFRSLE--KAQVCQLP 847 (849)
Q Consensus 788 ~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~-~i~f~pl~--~~~~~~I~ 847 (849)
..+. |+++|++||+. .|.+|||. .+|+..|+
T Consensus 347 ~~~~-----------------------------f~~~L~~rl~~~~i~lPpLreR~eDi~~L~ 380 (534)
T TIGR01817 347 AKGE-----------------------------FRADLYYRINVVPIFLPPLRERREDIPLLA 380 (534)
T ss_pred HcCC-----------------------------CCHHHHHHhcCCeeeCCCcccccccHHHHH
Confidence 4333 99999999974 77888887 45665543
No 110
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=5.2e-16 Score=183.67 Aligned_cols=209 Identities=23% Similarity=0.244 Sum_probs=157.8
Q ss_pred cCCCCccccHHHHHHHHHHH-------------hcCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEee
Q 003088 287 ELIDPVIGRETEIQRIIQIL-------------CRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD 353 (849)
Q Consensus 287 ~~l~~iiG~~~~i~~l~~~l-------------~~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~ 353 (849)
..|+++-|.++.+..+.+++ ....++.+||+||||||||.+|+++|..+..+.-. ..++.-+
T Consensus 262 v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~k-----isffmrk 336 (1080)
T KOG0732|consen 262 VGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRK-----ISFFMRK 336 (1080)
T ss_pred cCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccc-----cchhhhc
Confidence 35888999999998888854 12345679999999999999999999988654321 1111112
Q ss_pred hhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhc----CCCeEEEEc
Q 003088 354 MGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG----RGELQCIAS 429 (849)
Q Consensus 354 ~~~~~~~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le----~~~i~vI~a 429 (849)
..+.. .+|.|+.|..++.+|++++...|.|+|.|||+-|.+..+.-.. .....+...|+.+|. +|.+++|||
T Consensus 337 gaD~l--skwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqE--qih~SIvSTLLaLmdGldsRgqVvvigA 412 (1080)
T KOG0732|consen 337 GADCL--SKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQE--QIHASIVSTLLALMDGLDSRGQVVVIGA 412 (1080)
T ss_pred Cchhh--ccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHH--HhhhhHHHHHHHhccCCCCCCceEEEcc
Confidence 22223 5789999999999999999999999999999999876532100 012235566666664 799999999
Q ss_pred cChHHHHHHhhccHHHHh--ccc-cEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhcccccCcchhhH
Q 003088 430 TTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKA 506 (849)
Q Consensus 430 t~~~~~~~~~~~d~al~~--Rf~-~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~~~r~~p~~a 506 (849)
||..+ .+||+|+| ||+ .++|+.|+.+.|.+||.-.... ..-.++...+..++..+.+|.. .+.
T Consensus 413 TnRpd-----a~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrk----w~~~i~~~l~~~la~~t~gy~g-----aDl 478 (1080)
T KOG0732|consen 413 TNRPD-----AIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRK----WEPPISRELLLWLAEETSGYGG-----ADL 478 (1080)
T ss_pred cCCcc-----ccchhhcCCcccceeEeeeCCchHHHHHHHHHhccC----CCCCCCHHHHHHHHHhccccch-----HHH
Confidence 99998 89999999 997 6999999999999999776553 3346778888899999998875 456
Q ss_pred HHHHHHHhhHHH
Q 003088 507 IDLVDEAGSRAH 518 (849)
Q Consensus 507 i~ll~~a~~~~~ 518 (849)
..++.+|+-...
T Consensus 479 kaLCTeAal~~~ 490 (1080)
T KOG0732|consen 479 KALCTEAALIAL 490 (1080)
T ss_pred HHHHHHHhhhhh
Confidence 667777655443
No 111
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.67 E-value=1.2e-16 Score=174.54 Aligned_cols=178 Identities=18% Similarity=0.263 Sum_probs=141.8
Q ss_pred HHhccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcC-CCCceeEeecccccccccc
Q 003088 626 QLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFG-SESSMLRLDMSEYMERHTV 704 (849)
Q Consensus 626 ~l~~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~-~~~~~i~i~~~~~~~~~~~ 704 (849)
.....++|.+...+.+.+.++.. .+.. .++|+.|++||||+.+|+.||....+ ...|||.+||..+.+....
T Consensus 75 ~~~~~LIG~~~~~~~~~eqik~~----ap~~---~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~~ 147 (403)
T COG1221 75 EALDDLIGESPSLQELREQIKAY----APSG---LPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQE 147 (403)
T ss_pred hhhhhhhccCHHHHHHHHHHHhh----CCCC---CcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCHHH
Confidence 33467999999999988888762 1112 24999999999999999999977766 5899999999999998888
Q ss_pred ccccCCCCC-ccccccCcchhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCc
Q 003088 705 SKLIGSPPG-YVGYEEGGLLTEAIRRRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGS 783 (849)
Q Consensus 705 ~~l~g~~~g-~vg~~~~~~l~~~i~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~ 783 (849)
+.|||...| +.|... .-.+.+.++.+|+||+|||..+++..|..|+++||+|.++.-++......++++|++||...
T Consensus 148 ~eLFG~~kGaftGa~~--~k~Glfe~A~GGtLfLDEI~~LP~~~Q~kLl~~le~g~~~rvG~~~~~~~dVRli~AT~~~l 225 (403)
T COG1221 148 AELFGHEKGAFTGAQG--GKAGLFEQANGGTLFLDEIHRLPPEGQEKLLRVLEEGEYRRVGGSQPRPVDVRLICATTEDL 225 (403)
T ss_pred HHHhccccceeecccC--CcCchheecCCCEEehhhhhhCCHhHHHHHHHHHHcCceEecCCCCCcCCCceeeeccccCH
Confidence 889997655 455322 23456778899999999999999999999999999999998777777777999999999765
Q ss_pred hhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCC--hHHhh-ccccEEEcCCCCHHHHcccc
Q 003088 784 TTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFR--PELLN-RIDEVVVFRSLEKAQVCQLP 847 (849)
Q Consensus 784 ~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~--pell~-R~d~~i~f~pl~~~~~~~I~ 847 (849)
... +. .+|++ |+..+|..|||.+. ..+|+
T Consensus 226 ~~~----------------------------------~~~g~dl~~rl~~~~I~LPpLrER-~~Di~ 257 (403)
T COG1221 226 EEA----------------------------------VLAGADLTRRLNILTITLPPLRER-KEDIL 257 (403)
T ss_pred HHH----------------------------------HHhhcchhhhhcCceecCCChhhc-hhhHH
Confidence 431 22 37787 55678889998865 55554
No 112
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=2.1e-15 Score=172.62 Aligned_cols=202 Identities=20% Similarity=0.252 Sum_probs=150.4
Q ss_pred hhHHHHhhcCCCCccccHHHHHHHHHHHhcCCCCCC-eEeCCCCChHHHHHHHHHHHhhhCCCCc--ccc----------
Q 003088 279 DLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP-ILLGESGVGKTAIAEGLAIRIVQAEVPV--FLL---------- 345 (849)
Q Consensus 279 ~l~~~~~~~~l~~iiG~~~~i~~l~~~l~~~~~~ni-LL~GppGtGKT~la~~la~~l~~~~~p~--~~~---------- 345 (849)
+|..+|||..|++++|++..++.+...+...+..|. ||+||+|+|||++|+.+|+.+.+..... ...
T Consensus 5 ~~~~kyRP~~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~ 84 (486)
T PRK14953 5 PFARKYRPKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDK 84 (486)
T ss_pred HHHHhhCCCcHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhc
Confidence 799999999999999999999999999988777775 7899999999999999999986421111 000
Q ss_pred --CCeEEEeehhhhhccccccchHHHHHHHHHHHHHh----cCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhh
Q 003088 346 --SKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL 419 (849)
Q Consensus 346 --~~~~~~l~~~~~~~~~~~~g~~e~~l~~l~~~~~~----~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~l 419 (849)
...++.+|.. ..+| .+.++.+.+.+.. +...|+||||+|.| +.++++.|+.++
T Consensus 85 g~~~d~~eidaa------s~~g--vd~ir~I~~~~~~~P~~~~~KVvIIDEad~L-------------t~~a~naLLk~L 143 (486)
T PRK14953 85 GSFPDLIEIDAA------SNRG--IDDIRALRDAVSYTPIKGKYKVYIIDEAHML-------------TKEAFNALLKTL 143 (486)
T ss_pred CCCCcEEEEeCc------cCCC--HHHHHHHHHHHHhCcccCCeeEEEEEChhhc-------------CHHHHHHHHHHH
Confidence 1123333321 1112 1223444444432 34579999999999 345678888888
Q ss_pred cCC--CeEEEEccChHHHHHHhhccHHHHhccccEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhccc
Q 003088 420 GRG--ELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497 (849)
Q Consensus 420 e~~--~i~vI~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~ 497 (849)
+.. ..++|.+|+... .+.+++.+||+.+.|.+++.++...+|..+++ ..++.++++++..++..+.+-+
T Consensus 144 Eepp~~~v~Il~tt~~~-----kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k----~egi~id~~al~~La~~s~G~l 214 (486)
T PRK14953 144 EEPPPRTIFILCTTEYD-----KIPPTILSRCQRFIFSKPTKEQIKEYLKRICN----EEKIEYEEKALDLLAQASEGGM 214 (486)
T ss_pred hcCCCCeEEEEEECCHH-----HHHHHHHHhceEEEcCCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHcCCCH
Confidence 864 566666666543 56779999999999999999999999988877 5678999999999999887643
Q ss_pred ccCcchhhHHHHHHHHhhH
Q 003088 498 SDRYLPDKAIDLVDEAGSR 516 (849)
Q Consensus 498 ~~r~~p~~ai~ll~~a~~~ 516 (849)
..++.+++.++..
T Consensus 215 ------r~al~~Ldkl~~~ 227 (486)
T PRK14953 215 ------RDAASLLDQASTY 227 (486)
T ss_pred ------HHHHHHHHHHHHh
Confidence 4777888877543
No 113
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.66 E-value=1.6e-16 Score=158.81 Aligned_cols=157 Identities=25% Similarity=0.360 Sum_probs=118.3
Q ss_pred hccccccHHHHHHHHHHHHHh----hcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccc
Q 003088 628 KKRVIGQDEAVAAISRAVKRS----RVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHT 703 (849)
Q Consensus 628 ~~~i~Gq~~~i~~l~~~l~~~----~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~ 703 (849)
.+.++||++++...+-.+++. +.|- ..| -++|||||||||||++|+++|+.. +.||+.++..++...
T Consensus 120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~---WAP-knVLFyGppGTGKTm~Akalane~---kvp~l~vkat~liGe-- 190 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYLENPERFGD---WAP-KNVLFYGPPGTGKTMMAKALANEA---KVPLLLVKATELIGE-- 190 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHhhChHHhcc---cCc-ceeEEECCCCccHHHHHHHHhccc---CCceEEechHHHHHH--
Confidence 477999999998776665542 1121 222 359999999999999999999884 789999998876553
Q ss_pred cccccCCCCCccccccC--cchhHHHHhCCCeEEEEeCccccCH------------HHHHHHHHHhhcCeeecCCCceee
Q 003088 704 VSKLIGSPPGYVGYEEG--GLLTEAIRRRPFTLLLLDEIEKAHP------------DIFNILLQVFEDGHLTDSHGRRVS 769 (849)
Q Consensus 704 ~~~l~g~~~g~vg~~~~--~~l~~~i~~~~~~vl~lDEid~l~~------------~~~~~Ll~~le~g~~~~~~g~~~~ 769 (849)
|||.... ..+.+..++...||+||||+|.+.. ++.|+||..||.-. .
T Consensus 191 ----------hVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~--e------- 251 (368)
T COG1223 191 ----------HVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIK--E------- 251 (368)
T ss_pred ----------HhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcc--c-------
Confidence 5554432 2355555667789999999998743 48999999998622 1
Q ss_pred cCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHHHccccC
Q 003088 770 FKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQLPL 848 (849)
Q Consensus 770 ~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~I~~ 848 (849)
..-++.|++||... .++|.+.+||..-|.|.-++.++..+|++
T Consensus 252 neGVvtIaaTN~p~------------------------------------~LD~aiRsRFEeEIEF~LP~~eEr~~ile 294 (368)
T COG1223 252 NEGVVTIAATNRPE------------------------------------LLDPAIRSRFEEEIEFKLPNDEERLEILE 294 (368)
T ss_pred CCceEEEeecCChh------------------------------------hcCHHHHhhhhheeeeeCCChHHHHHHHH
Confidence 12468899998632 17899999999999999999999888875
No 114
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=2.5e-16 Score=159.54 Aligned_cols=168 Identities=26% Similarity=0.331 Sum_probs=134.4
Q ss_pred cCCCCccccHHHHHHHHHHH-------------hcCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEee
Q 003088 287 ELIDPVIGRETEIQRIIQIL-------------CRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD 353 (849)
Q Consensus 287 ~~l~~iiG~~~~i~~l~~~l-------------~~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~ 353 (849)
.++.++-|.+.+++.+.+.+ ..+.+..++|||+||||||.+|+++|+.. ...++.+-
T Consensus 182 Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqT----------SATFlRvv 251 (440)
T KOG0726|consen 182 ETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQT----------SATFLRVV 251 (440)
T ss_pred hhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhccc----------chhhhhhh
Confidence 45678899999999988865 22456789999999999999999999876 44445544
Q ss_pred hhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhc-------CCCeEE
Q 003088 354 MGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG-------RGELQC 426 (849)
Q Consensus 354 ~~~~~~~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le-------~~~i~v 426 (849)
-+.++ .+|.|+-...++++|+-+....|+|+||||||.+-..+-. .++++..+++..++.+|. ++++.+
T Consensus 252 GseLi--QkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyd--s~SggerEiQrtmLELLNQldGFdsrgDvKv 327 (440)
T KOG0726|consen 252 GSELI--QKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYD--SNSGGEREIQRTMLELLNQLDGFDSRGDVKV 327 (440)
T ss_pred hHHHH--HHHhccchHHHHHHHHHHHhcCCceEEeehhhhhcccccc--CCCccHHHHHHHHHHHHHhccCccccCCeEE
Confidence 45555 5678888888999999999999999999999999433222 334567788877776663 789999
Q ss_pred EEccChHHHHHHhhccHHHHh--ccc-cEEecCCCHHHHHHHHHHHHHHH
Q 003088 427 IASTTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKY 473 (849)
Q Consensus 427 I~at~~~~~~~~~~~d~al~~--Rf~-~i~~~~ps~~e~~~iL~~~~~~~ 473 (849)
|.|||..+ .+||+|.| |++ +|+|+.|+...+.+|+.-...++
T Consensus 328 imATnrie-----~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~M 372 (440)
T KOG0726|consen 328 IMATNRIE-----TLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRM 372 (440)
T ss_pred EEeccccc-----ccCHhhcCCCccccccccCCCchhhhceeEEEeeccc
Confidence 99999988 99999999 887 69999999999999986544433
No 115
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.66 E-value=3e-15 Score=170.41 Aligned_cols=202 Identities=19% Similarity=0.202 Sum_probs=148.8
Q ss_pred hhhHHHHhhcCCCCccccHHHHHHHHHHHhcCCCCC-CeEeCCCCChHHHHHHHHHHHhhhCCCCcc---c---------
Q 003088 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEVPVF---L--------- 344 (849)
Q Consensus 278 ~~l~~~~~~~~l~~iiG~~~~i~~l~~~l~~~~~~n-iLL~GppGtGKT~la~~la~~l~~~~~p~~---~--------- 344 (849)
..|.++|||..|+++||++..+..+...+..++..| +||+||+|+|||++|+.+|+.+.+...... .
T Consensus 5 ~~~~~kyRP~~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i 84 (451)
T PRK06305 5 QVSSRKYRPQTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEI 84 (451)
T ss_pred HHHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHH
Confidence 358899999999999999999999999998776655 689999999999999999999865321100 0
Q ss_pred ---cCCeEEEeehhhhhccccccchHHHHHHHHHHHHH----hcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhh
Q 003088 345 ---LSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKP 417 (849)
Q Consensus 345 ---~~~~~~~l~~~~~~~~~~~~g~~e~~l~~l~~~~~----~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~ 417 (849)
.+..++.++ |...+| .+.++.+.+.+. .+...|+||||+|.| ..++++.|+.
T Consensus 85 ~~~~~~d~~~i~------g~~~~g--id~ir~i~~~l~~~~~~~~~kvvIIdead~l-------------t~~~~n~LLk 143 (451)
T PRK06305 85 SSGTSLDVLEID------GASHRG--IEDIRQINETVLFTPSKSRYKIYIIDEVHML-------------TKEAFNSLLK 143 (451)
T ss_pred hcCCCCceEEee------ccccCC--HHHHHHHHHHHHhhhhcCCCEEEEEecHHhh-------------CHHHHHHHHH
Confidence 011223322 111121 112333333332 245679999999999 3456888999
Q ss_pred hhcC--CCeEEEEccChHHHHHHhhccHHHHhccccEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhc
Q 003088 418 SLGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495 (849)
Q Consensus 418 ~le~--~~i~vI~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~ 495 (849)
++++ +.+.+|++|+... .+.+++++||..++|.+++.++....|...++ ..++.++++++..++..+++
T Consensus 144 ~lEep~~~~~~Il~t~~~~-----kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~----~eg~~i~~~al~~L~~~s~g 214 (451)
T PRK06305 144 TLEEPPQHVKFFLATTEIH-----KIPGTILSRCQKMHLKRIPEETIIDKLALIAK----QEGIETSREALLPIARAAQG 214 (451)
T ss_pred HhhcCCCCceEEEEeCChH-----hcchHHHHhceEEeCCCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHcCC
Confidence 9986 5677888877554 67789999999999999999999999987776 56889999999999999886
Q ss_pred ccccCcchhhHHHHHHHHhh
Q 003088 496 YISDRYLPDKAIDLVDEAGS 515 (849)
Q Consensus 496 ~~~~r~~p~~ai~ll~~a~~ 515 (849)
.+ ..++.+++..+.
T Consensus 215 dl------r~a~~~Lekl~~ 228 (451)
T PRK06305 215 SL------RDAESLYDYVVG 228 (451)
T ss_pred CH------HHHHHHHHHHHH
Confidence 44 366677766543
No 116
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=1.6e-15 Score=171.00 Aligned_cols=202 Identities=19% Similarity=0.152 Sum_probs=149.4
Q ss_pred hhHHHHhhcCCCCccccHHHHHHHHHHHhcCCCCC-CeEeCCCCChHHHHHHHHHHHhhhCCCC----------cccc--
Q 003088 279 DLTARASEELIDPVIGRETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEVP----------VFLL-- 345 (849)
Q Consensus 279 ~l~~~~~~~~l~~iiG~~~~i~~l~~~l~~~~~~n-iLL~GppGtGKT~la~~la~~l~~~~~p----------~~~~-- 345 (849)
.++++|||..|++++|++..++.|...+...+.+| +||+||+|+|||++|+.+|+.+.+.... ....
T Consensus 5 ~l~~k~RP~~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c 84 (397)
T PRK14955 5 VIARKYRPKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGEC 84 (397)
T ss_pred HHHHhcCCCcHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCC
Confidence 57899999999999999999999999998877777 8899999999999999999999763210 0000
Q ss_pred ----------CCeEEEeehhhhhccccccchHHHHHHHHHHHHHh----cCCeEEEEcCcchhhhCCCCCCCCCCccHHH
Q 003088 346 ----------SKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDI 411 (849)
Q Consensus 346 ----------~~~~~~l~~~~~~~~~~~~g~~e~~l~~l~~~~~~----~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~ 411 (849)
+..++.++. .... ..+.++.+.+.+.. +...|+||||+|.+ +...
T Consensus 85 ~~c~~~~~~~~~n~~~~~~------~~~~--~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l-------------~~~~ 143 (397)
T PRK14955 85 ESCRDFDAGTSLNISEFDA------ASNN--SVDDIRLLRENVRYGPQKGRYRVYIIDEVHML-------------SIAA 143 (397)
T ss_pred HHHHHHhcCCCCCeEeecc------cccC--CHHHHHHHHHHHhhchhcCCeEEEEEeChhhC-------------CHHH
Confidence 011222221 1111 12345555555532 34579999999999 3346
Q ss_pred HHHHhhhhcC--CCeEEEEccChHHHHHHhhccHHHHhccccEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHH
Q 003088 412 SNLLKPSLGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAA 489 (849)
Q Consensus 412 ~~~L~~~le~--~~i~vI~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~ 489 (849)
++.|+.++++ +..++|++|+... .+.+++++|++.++|.+++.++..+.+...++ ..++.++++++..+
T Consensus 144 ~~~LLk~LEep~~~t~~Il~t~~~~-----kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~----~~g~~i~~~al~~l 214 (397)
T PRK14955 144 FNAFLKTLEEPPPHAIFIFATTELH-----KIPATIASRCQRFNFKRIPLEEIQQQLQGICE----AEGISVDADALQLI 214 (397)
T ss_pred HHHHHHHHhcCCCCeEEEEEeCChH-----HhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHH
Confidence 7788888886 3567777766543 66689999999999999999999998887776 56889999999999
Q ss_pred HHhhhcccccCcchhhHHHHHHHHhhH
Q 003088 490 VHLSARYISDRYLPDKAIDLVDEAGSR 516 (849)
Q Consensus 490 a~ls~~~~~~r~~p~~ai~ll~~a~~~ 516 (849)
+..+++.+ ..+...++.....
T Consensus 215 ~~~s~g~l------r~a~~~L~kl~~~ 235 (397)
T PRK14955 215 GRKAQGSM------RDAQSILDQVIAF 235 (397)
T ss_pred HHHcCCCH------HHHHHHHHHHHHh
Confidence 99998754 3667777766544
No 117
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.65 E-value=3.6e-15 Score=166.63 Aligned_cols=201 Identities=21% Similarity=0.223 Sum_probs=147.9
Q ss_pred hhHHHHhhcCCCCccccHHHHHHHHHHHhcCCCCC-CeEeCCCCChHHHHHHHHHHHhhhCCCCcc--c-----------
Q 003088 279 DLTARASEELIDPVIGRETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEVPVF--L----------- 344 (849)
Q Consensus 279 ~l~~~~~~~~l~~iiG~~~~i~~l~~~l~~~~~~n-iLL~GppGtGKT~la~~la~~l~~~~~p~~--~----------- 344 (849)
+|.+++||..+++++|++..++.+.+.+...+.+| +||+||||+|||++|+.+++.+.+...+.. .
T Consensus 3 ~~~~~~rp~~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~ 82 (355)
T TIGR02397 3 VLARKYRPQTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINS 82 (355)
T ss_pred cHHHHhCCCcHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhc
Confidence 68999999999999999999999999988776655 689999999999999999999865422110 0
Q ss_pred -cCCeEEEeehhhhhccccccchHHHHHHHHHHHHHh----cCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhh
Q 003088 345 -LSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL 419 (849)
Q Consensus 345 -~~~~~~~l~~~~~~~~~~~~g~~e~~l~~l~~~~~~----~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~l 419 (849)
.+..++.++.. .. .....++.+++.+.. ++..|++|||+|.+ ....++.|+..+
T Consensus 83 ~~~~~~~~~~~~------~~--~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l-------------~~~~~~~Ll~~l 141 (355)
T TIGR02397 83 GSSLDVIEIDAA------SN--NGVDDIREILDNVKYAPSSGKYKVYIIDEVHML-------------SKSAFNALLKTL 141 (355)
T ss_pred CCCCCEEEeecc------cc--CCHHHHHHHHHHHhcCcccCCceEEEEeChhhc-------------CHHHHHHHHHHH
Confidence 01223333221 00 112234556665543 34569999999999 334577788888
Q ss_pred cC--CCeEEEEccChHHHHHHhhccHHHHhccccEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhccc
Q 003088 420 GR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497 (849)
Q Consensus 420 e~--~~i~vI~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~ 497 (849)
++ +.+.+|++|+... .+.+++++||..+.|++|+.++..+++...++ ..++.++++++..++..+.+.
T Consensus 142 e~~~~~~~lIl~~~~~~-----~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~----~~g~~i~~~a~~~l~~~~~g~- 211 (355)
T TIGR02397 142 EEPPEHVVFILATTEPH-----KIPATILSRCQRFDFKRIPLEDIVERLKKILD----KEGIKIEDEALELIARAADGS- 211 (355)
T ss_pred hCCccceeEEEEeCCHH-----HHHHHHHhheeEEEcCCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHcCCC-
Confidence 75 4567777776554 56789999999999999999999999988776 567899999999999887653
Q ss_pred ccCcchhhHHHHHHHHhh
Q 003088 498 SDRYLPDKAIDLVDEAGS 515 (849)
Q Consensus 498 ~~r~~p~~ai~ll~~a~~ 515 (849)
+..++..++....
T Consensus 212 -----~~~a~~~lekl~~ 224 (355)
T TIGR02397 212 -----LRDALSLLDQLIS 224 (355)
T ss_pred -----hHHHHHHHHHHHh
Confidence 3466666666654
No 118
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.65 E-value=5.7e-16 Score=169.16 Aligned_cols=193 Identities=26% Similarity=0.395 Sum_probs=134.4
Q ss_pred HHHHHHHHhccccccHHHHHHHHHHHHH--hhcCCCCCCC---CCccceeecCCCCchHHHHHHHHHHhcCCCCceeEee
Q 003088 620 LVGLEEQLKKRVIGQDEAVAAISRAVKR--SRVGLKDPNR---PTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLD 694 (849)
Q Consensus 620 ~~~l~~~l~~~i~Gq~~~i~~l~~~l~~--~~~g~~~~~~---p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~ 694 (849)
+..+...|.+.|+||+++++.+..++.. .+.++..+.+ +..++||+||||||||++|+.||+.+ +.+|+.+|
T Consensus 6 p~~I~~~Ld~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l---~~~fi~vD 82 (443)
T PRK05201 6 PREIVSELDKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLA---NAPFIKVE 82 (443)
T ss_pred HHHHHHHhccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHh---CChheeec
Confidence 5677888999999999999999998864 2333332211 13679999999999999999999997 67899999
Q ss_pred ccccccccccc----------------------------------------cccCCC-----------------------
Q 003088 695 MSEYMERHTVS----------------------------------------KLIGSP----------------------- 711 (849)
Q Consensus 695 ~~~~~~~~~~~----------------------------------------~l~g~~----------------------- 711 (849)
++++.+..... .+.+..
T Consensus 83 ~t~f~e~GyvG~d~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~ 162 (443)
T PRK05201 83 ATKFTEVGYVGRDVESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKK 162 (443)
T ss_pred chhhccCCcccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHH
Confidence 98776521100 011100
Q ss_pred ----------------C-Cc-c------cccc------------------------------------------CcchhH
Q 003088 712 ----------------P-GY-V------GYEE------------------------------------------GGLLTE 725 (849)
Q Consensus 712 ----------------~-g~-v------g~~~------------------------------------------~~~l~~ 725 (849)
. .+ . |..+ .....+
T Consensus 163 l~~g~ldd~~iei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ 242 (443)
T PRK05201 163 LREGELDDKEIEIEVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQE 242 (443)
T ss_pred HHcCCcCCcEEEEEecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHH
Confidence 0 00 0 0000 001122
Q ss_pred HHHhC-CCeEEEEeCccccCH------------HHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCchhhhcccCC
Q 003088 726 AIRRR-PFTLLLLDEIEKAHP------------DIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKGRHG 792 (849)
Q Consensus 726 ~i~~~-~~~vl~lDEid~l~~------------~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~~~~~~ 792 (849)
++..+ ..||||||||||+.. .+|..||.++|...+.-.. ..++..++.||++.-+...
T Consensus 243 ai~~ae~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~-~~i~T~~ILFI~~GAF~~~-------- 313 (443)
T PRK05201 243 AIERVEQNGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKY-GMVKTDHILFIASGAFHVS-------- 313 (443)
T ss_pred HHHHHHcCCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeeecc-eeEECCceeEEecCCcCCC--------
Confidence 34443 679999999999842 3999999999886666533 3678889999998765311
Q ss_pred ccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHHHccccC
Q 003088 793 SIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQLPL 848 (849)
Q Consensus 793 ~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~I~~ 848 (849)
.+ ..+-|||..||..++.+.||+.+++.+|+.
T Consensus 314 ------kp------------------~DlIPEl~GR~Pi~v~L~~L~~~dL~~ILt 345 (443)
T PRK05201 314 ------KP------------------SDLIPELQGRFPIRVELDALTEEDFVRILT 345 (443)
T ss_pred ------Ch------------------hhccHHHhCccceEEECCCCCHHHHHHHhc
Confidence 00 016799999999999999999999999873
No 119
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.65 E-value=5.2e-16 Score=180.41 Aligned_cols=180 Identities=19% Similarity=0.285 Sum_probs=141.3
Q ss_pred hccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccccc
Q 003088 628 KKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKL 707 (849)
Q Consensus 628 ~~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l 707 (849)
++.++|.+..++.+...+++.... . .++||+|++||||+++|+++|....+...||+.+||..+.+....+.+
T Consensus 203 f~~~ig~s~~~~~~~~~~~~~A~~-~------~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~~~~e~el 275 (520)
T PRK10820 203 FSQIVAVSPKMRQVVEQARKLAML-D------APLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDVVESEL 275 (520)
T ss_pred ccceeECCHHHHHHHHHHHHHhCC-C------CCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCHHHHHHHh
Confidence 467999999999988888765322 1 239999999999999999999988777889999999998877667788
Q ss_pred cCCCCC-ccccccCcchhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCchhh
Q 003088 708 IGSPPG-YVGYEEGGLLTEAIRRRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTI 786 (849)
Q Consensus 708 ~g~~~g-~vg~~~~~~l~~~i~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l 786 (849)
||..+| +.|..++ ..+.+..+.+|+||||||+.+++..|..|+++++++.+...++......+++||+||+.++..+
T Consensus 276 FG~~~~~~~~~~~~--~~g~~e~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~l~~l 353 (520)
T PRK10820 276 FGHAPGAYPNALEG--KKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVEL 353 (520)
T ss_pred cCCCCCCcCCcccC--CCChhhhcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCCHHHH
Confidence 986543 3332221 2234556778999999999999999999999999998876655444456899999999988777
Q ss_pred hcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccc-cEEEcCCCCH--HHHcc
Q 003088 787 AKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRID-EVVVFRSLEK--AQVCQ 845 (849)
Q Consensus 787 ~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d-~~i~f~pl~~--~~~~~ 845 (849)
...+. |+++|++|+. ..|..|||.+ +|+..
T Consensus 354 ~~~g~-----------------------------f~~dL~~rL~~~~i~lPpLreR~~Di~~ 386 (520)
T PRK10820 354 VQKGE-----------------------------FREDLYYRLNVLTLNLPPLRDRPQDIMP 386 (520)
T ss_pred HHcCC-----------------------------ccHHHHhhcCeeEEeCCCcccChhHHHH
Confidence 65554 8999999996 5778888873 34443
No 120
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=4.5e-15 Score=173.21 Aligned_cols=203 Identities=18% Similarity=0.160 Sum_probs=151.1
Q ss_pred hhHHHHhhcCCCCccccHHHHHHHHHHHhcCCCCC-CeEeCCCCChHHHHHHHHHHHhhhCCC---C-------cccc--
Q 003088 279 DLTARASEELIDPVIGRETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEV---P-------VFLL-- 345 (849)
Q Consensus 279 ~l~~~~~~~~l~~iiG~~~~i~~l~~~l~~~~~~n-iLL~GppGtGKT~la~~la~~l~~~~~---p-------~~~~-- 345 (849)
.+.++|||..|+++||++..++.|...+...+..| +||+||+|||||++|+.+|+.+.+... | ....
T Consensus 5 ~l~~kyRP~~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C 84 (620)
T PRK14954 5 VIARKYRPSKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGEC 84 (620)
T ss_pred HHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccC
Confidence 47889999999999999999999999888777766 789999999999999999999976321 1 0000
Q ss_pred ----------CCeEEEeehhhhhccccccchHHHHHHHHHHHHH----hcCCeEEEEcCcchhhhCCCCCCCCCCccHHH
Q 003088 346 ----------SKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDI 411 (849)
Q Consensus 346 ----------~~~~~~l~~~~~~~~~~~~g~~e~~l~~l~~~~~----~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~ 411 (849)
+..++.+|. ....+ .+.++.+.+.+. .+...|+||||+|.| +..+
T Consensus 85 ~sC~~~~~g~~~n~~~~d~------~s~~~--vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~L-------------t~~a 143 (620)
T PRK14954 85 ESCRDFDAGTSLNISEFDA------ASNNS--VDDIRQLRENVRYGPQKGRYRVYIIDEVHML-------------STAA 143 (620)
T ss_pred HHHHHHhccCCCCeEEecc------cccCC--HHHHHHHHHHHHhhhhcCCCEEEEEeChhhc-------------CHHH
Confidence 112222221 11111 234555555553 244679999999999 3456
Q ss_pred HHHHhhhhcC--CCeEEEEccChHHHHHHhhccHHHHhccccEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHH
Q 003088 412 SNLLKPSLGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAA 489 (849)
Q Consensus 412 ~~~L~~~le~--~~i~vI~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~ 489 (849)
++.|+.+|++ +..++|++|+... .+-+.+++|++.++|.+++.++....|..++. ..++.++++++..+
T Consensus 144 ~naLLK~LEePp~~tv~IL~t~~~~-----kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~----~egi~I~~eal~~L 214 (620)
T PRK14954 144 FNAFLKTLEEPPPHAIFIFATTELH-----KIPATIASRCQRFNFKRIPLDEIQSQLQMICR----AEGIQIDADALQLI 214 (620)
T ss_pred HHHHHHHHhCCCCCeEEEEEeCChh-----hhhHHHHhhceEEecCCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHH
Confidence 8899999997 4567777776543 66789999999999999999999988887776 56889999999999
Q ss_pred HHhhhcccccCcchhhHHHHHHHHhhHH
Q 003088 490 VHLSARYISDRYLPDKAIDLVDEAGSRA 517 (849)
Q Consensus 490 a~ls~~~~~~r~~p~~ai~ll~~a~~~~ 517 (849)
+..+++.+ ..++..++..+...
T Consensus 215 a~~s~Gdl------r~al~eLeKL~~y~ 236 (620)
T PRK14954 215 ARKAQGSM------RDAQSILDQVIAFS 236 (620)
T ss_pred HHHhCCCH------HHHHHHHHHHHHhc
Confidence 99998765 36677777665543
No 121
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.65 E-value=7.6e-16 Score=179.12 Aligned_cols=179 Identities=21% Similarity=0.289 Sum_probs=140.1
Q ss_pred ccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeecccccccccccccc
Q 003088 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLI 708 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~ 708 (849)
..++|++..++.+...+...... ..+|||+|++||||+++|++||......+.+|+.+||..+.+....+.+|
T Consensus 187 ~~iig~s~~~~~~~~~i~~~a~~-------~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~e~~lf 259 (509)
T PRK05022 187 GEMIGQSPAMQQLKKEIEVVAAS-------DLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLAESELF 259 (509)
T ss_pred CceeecCHHHHHHHHHHHHHhCC-------CCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHHHHHhc
Confidence 56999999999999999875322 12499999999999999999999987778899999999987766667788
Q ss_pred CCCCC-ccccccCcchhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCchhhh
Q 003088 709 GSPPG-YVGYEEGGLLTEAIRRRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIA 787 (849)
Q Consensus 709 g~~~g-~vg~~~~~~l~~~i~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~ 787 (849)
|...| +.|... ...+.+..+.+|+||||||+.+++.+|..|+++|+++.+...++......+++||++||.....+.
T Consensus 260 G~~~g~~~ga~~--~~~g~~~~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~ 337 (509)
T PRK05022 260 GHVKGAFTGAIS--NRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRDLREEV 337 (509)
T ss_pred CccccccCCCcc--cCCcchhhcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCCCHHHHH
Confidence 86543 223211 112235567789999999999999999999999999988766655544569999999999877655
Q ss_pred cccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhcccc-EEEcCCCCH--HHHcc
Q 003088 788 KGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDE-VVVFRSLEK--AQVCQ 845 (849)
Q Consensus 788 ~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~-~i~f~pl~~--~~~~~ 845 (849)
..+. |+++|++|+.. .|.+|||.+ +|+..
T Consensus 338 ~~~~-----------------------------f~~dL~~rl~~~~i~lPpLreR~eDI~~ 369 (509)
T PRK05022 338 RAGR-----------------------------FRADLYHRLSVFPLSVPPLRERGDDVLL 369 (509)
T ss_pred HcCC-----------------------------ccHHHHhcccccEeeCCCchhchhhHHH
Confidence 4443 99999999974 577888873 34443
No 122
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.64 E-value=1.7e-15 Score=186.29 Aligned_cols=178 Identities=16% Similarity=0.140 Sum_probs=129.3
Q ss_pred CCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhccc----------------------------
Q 003088 310 TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGA---------------------------- 361 (849)
Q Consensus 310 ~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~~~---------------------------- 361 (849)
..+++||+||||||||.+|+++|... +++++.+.++.++...
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es----------~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~ 1698 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNS----------YVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLD 1698 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhc----------CCceEEEEHHHHhhcccccccccccccccccccccccccccccc
Confidence 35689999999999999999999987 6777777777766321
Q ss_pred -------------cccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhc-------C
Q 003088 362 -------------KERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG-------R 421 (849)
Q Consensus 362 -------------~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le-------~ 421 (849)
...++-..+++.+|+.|+...||||||||||.+.... ...-..+.|...|+ .
T Consensus 1699 ~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~d--------s~~ltL~qLLneLDg~~~~~s~ 1770 (2281)
T CHL00206 1699 TELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNE--------SNYLSLGLLVNSLSRDCERCST 1770 (2281)
T ss_pred hhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCc--------cceehHHHHHHHhccccccCCC
Confidence 0001112348889999999999999999999995431 11112445544554 2
Q ss_pred CCeEEEEccChHHHHHHhhccHHHHh--ccc-cEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHH--HHHHHHHhhhcc
Q 003088 422 GELQCIASTTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLE--AINAAVHLSARY 496 (849)
Q Consensus 422 ~~i~vI~at~~~~~~~~~~~d~al~~--Rf~-~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~--~l~~~a~ls~~~ 496 (849)
.+++||||||.++ .+||||.| ||+ .|.|+.|+..+|.+++..+.. ..++.+.++ .+..++..+.+|
T Consensus 1771 ~~VIVIAATNRPD-----~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~----tkg~~L~~~~vdl~~LA~~T~Gf 1841 (2281)
T CHL00206 1771 RNILVIASTHIPQ-----KVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSY----TRGFHLEKKMFHTNGFGSITMGS 1841 (2281)
T ss_pred CCEEEEEeCCCcc-----cCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHh----hcCCCCCcccccHHHHHHhCCCC
Confidence 4689999999998 89999999 998 599999999999998875542 223333322 356777777776
Q ss_pred cccCcchhhHHHHHHHHhhHHHH
Q 003088 497 ISDRYLPDKAIDLVDEAGSRAHI 519 (849)
Q Consensus 497 ~~~r~~p~~ai~ll~~a~~~~~~ 519 (849)
. +++...++.+|+..+..
T Consensus 1842 S-----GADLanLvNEAaliAir 1859 (2281)
T CHL00206 1842 N-----ARDLVALTNEALSISIT 1859 (2281)
T ss_pred C-----HHHHHHHHHHHHHHHHH
Confidence 4 47888889998876643
No 123
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=8.7e-16 Score=153.67 Aligned_cols=201 Identities=21% Similarity=0.280 Sum_probs=152.0
Q ss_pred CCCCccccHHHHHHHHHHHhc-------------CCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeeh
Q 003088 288 LIDPVIGRETEIQRIIQILCR-------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM 354 (849)
Q Consensus 288 ~l~~iiG~~~~i~~l~~~l~~-------------~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~ 354 (849)
+..++-|.+++++++.+++.- ..+..+|||||||||||..|+++|++. +.-++.+--
T Consensus 175 ty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt----------dacfirvig 244 (435)
T KOG0729|consen 175 TYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT----------DACFIRVIG 244 (435)
T ss_pred ccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc----------CceEEeehh
Confidence 466889999999998887632 345689999999999999999999887 566666655
Q ss_pred hhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhc-------CCCeEEE
Q 003088 355 GLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG-------RGELQCI 427 (849)
Q Consensus 355 ~~~~~~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le-------~~~i~vI 427 (849)
+.++ .+|.|+-...++++|+.++..+-||+|+||||.+-+++-. .| .++..+++..++.++. +|++.++
T Consensus 245 selv--qkyvgegarmvrelf~martkkaciiffdeidaiggarfd-dg-~ggdnevqrtmleli~qldgfdprgnikvl 320 (435)
T KOG0729|consen 245 SELV--QKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFD-DG-AGGDNEVQRTMLELINQLDGFDPRGNIKVL 320 (435)
T ss_pred HHHH--HHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCcccc-CC-CCCcHHHHHHHHHHHHhccCCCCCCCeEEE
Confidence 5565 5789999999999999999888899999999999554322 11 2356677777766553 7899999
Q ss_pred EccChHHHHHHhhccHHHHh--ccc-cEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhcccccCcchh
Q 003088 428 ASTTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPD 504 (849)
Q Consensus 428 ~at~~~~~~~~~~~d~al~~--Rf~-~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~~~r~~p~ 504 (849)
.+||.++ -+||+|.| |++ +|+|..|+.+-|.+|++-..+.+....+++ .+.++.++..- ...
T Consensus 321 matnrpd-----tldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir-----~ellarlcpns-----tga 385 (435)
T KOG0729|consen 321 MATNRPD-----TLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIR-----FELLARLCPNS-----TGA 385 (435)
T ss_pred eecCCCC-----CcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchh-----HHHHHhhCCCC-----cch
Confidence 9999998 89999999 997 699999999999999976555332222222 24455555432 235
Q ss_pred hHHHHHHHHhhHH
Q 003088 505 KAIDLVDEAGSRA 517 (849)
Q Consensus 505 ~ai~ll~~a~~~~ 517 (849)
...+++.+|+..+
T Consensus 386 eirsvcteagmfa 398 (435)
T KOG0729|consen 386 EIRSVCTEAGMFA 398 (435)
T ss_pred HHHHHHHHhhHHH
Confidence 6667778877655
No 124
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=4.7e-15 Score=174.12 Aligned_cols=203 Identities=20% Similarity=0.189 Sum_probs=155.3
Q ss_pred hhhHHHHhhcCCCCccccHHHHHHHHHHHhcCCCCC-CeEeCCCCChHHHHHHHHHHHhhhCCCCc---cc---------
Q 003088 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEVPV---FL--------- 344 (849)
Q Consensus 278 ~~l~~~~~~~~l~~iiG~~~~i~~l~~~l~~~~~~n-iLL~GppGtGKT~la~~la~~l~~~~~p~---~~--------- 344 (849)
..+.++|||..|+++||++..++.|...+...+..| +||+||+|+|||++|+.+|+.+.+..... .+
T Consensus 5 ~~~~~kyRP~~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~ 84 (614)
T PRK14971 5 IVSARKYRPSTFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAF 84 (614)
T ss_pred HHHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHH
Confidence 357899999999999999999999999998887777 68999999999999999999986432110 00
Q ss_pred ---cCCeEEEeehhhhhccccccchHHHHHHHHHHHHHh----cCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhh
Q 003088 345 ---LSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKP 417 (849)
Q Consensus 345 ---~~~~~~~l~~~~~~~~~~~~g~~e~~l~~l~~~~~~----~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~ 417 (849)
.+..++.+|... .. ..+.++.+++++.. ++..|+||||+|.| +.++++.|+.
T Consensus 85 ~~~~~~n~~~ld~~~------~~--~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~L-------------s~~a~naLLK 143 (614)
T PRK14971 85 NEQRSYNIHELDAAS------NN--SVDDIRNLIEQVRIPPQIGKYKIYIIDEVHML-------------SQAAFNAFLK 143 (614)
T ss_pred hcCCCCceEEecccc------cC--CHHHHHHHHHHHhhCcccCCcEEEEEECcccC-------------CHHHHHHHHH
Confidence 112333333211 11 12345566655543 34579999999999 4567889999
Q ss_pred hhcC--CCeEEEEccChHHHHHHhhccHHHHhccccEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhc
Q 003088 418 SLGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495 (849)
Q Consensus 418 ~le~--~~i~vI~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~ 495 (849)
+|+. ...++|++|+... .+-+++++||+.++|.+++.++....|..++. ..++.++++++..++..+++
T Consensus 144 ~LEepp~~tifIL~tt~~~-----kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~----~egi~i~~~al~~La~~s~g 214 (614)
T PRK14971 144 TLEEPPSYAIFILATTEKH-----KILPTILSRCQIFDFNRIQVADIVNHLQYVAS----KEGITAEPEALNVIAQKADG 214 (614)
T ss_pred HHhCCCCCeEEEEEeCCch-----hchHHHHhhhheeecCCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHcCC
Confidence 9996 4577888877554 67899999999999999999999999988777 56899999999999999887
Q ss_pred ccccCcchhhHHHHHHHHhhH
Q 003088 496 YISDRYLPDKAIDLVDEAGSR 516 (849)
Q Consensus 496 ~~~~r~~p~~ai~ll~~a~~~ 516 (849)
.+ ..++..++..+..
T Consensus 215 dl------r~al~~Lekl~~y 229 (614)
T PRK14971 215 GM------RDALSIFDQVVSF 229 (614)
T ss_pred CH------HHHHHHHHHHHHh
Confidence 54 3677777776544
No 125
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=5.3e-15 Score=165.81 Aligned_cols=203 Identities=21% Similarity=0.211 Sum_probs=148.2
Q ss_pred hhhHHHHhhcCCCCccccHHHHHHHHHHHhcCCCC-CCeEeCCCCChHHHHHHHHHHHhhhCCCCcccc--CCeEEEeeh
Q 003088 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRTKN-NPILLGESGVGKTAIAEGLAIRIVQAEVPVFLL--SKRIMSLDM 354 (849)
Q Consensus 278 ~~l~~~~~~~~l~~iiG~~~~i~~l~~~l~~~~~~-niLL~GppGtGKT~la~~la~~l~~~~~p~~~~--~~~~~~l~~ 354 (849)
..|.++|||..|++++|++..++.+.+.+..+..+ ++||+||||+|||++|+.+++.+.+...+.... +..++.++.
T Consensus 5 ~~~~~k~rP~~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~ 84 (367)
T PRK14970 5 VVSARKYRPQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDA 84 (367)
T ss_pred HHHHHHHCCCcHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEecc
Confidence 46899999999999999999999999998776544 688999999999999999999986533221111 222333321
Q ss_pred hhhhccccccchHHHHHHHHHHHHHh----cCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCC--CeEEEE
Q 003088 355 GLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG--ELQCIA 428 (849)
Q Consensus 355 ~~~~~~~~~~g~~e~~l~~l~~~~~~----~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~--~i~vI~ 428 (849)
. . ....+.++.+++++.. ++..|+||||+|.+. ...++.|...+++. ..++|+
T Consensus 85 ~------~--~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~-------------~~~~~~ll~~le~~~~~~~~Il 143 (367)
T PRK14970 85 A------S--NNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLS-------------SAAFNAFLKTLEEPPAHAIFIL 143 (367)
T ss_pred c------c--CCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcC-------------HHHHHHHHHHHhCCCCceEEEE
Confidence 1 1 1112345556665542 345799999999882 34567777777753 456666
Q ss_pred ccChHHHHHHhhccHHHHhccccEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhcccccCcchhhHHH
Q 003088 429 STTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAID 508 (849)
Q Consensus 429 at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~~~r~~p~~ai~ 508 (849)
+++... .+.+++.+||..+.+++|+.++...++...+. .+++.++++++..++..+.+-+ ..++.
T Consensus 144 ~~~~~~-----kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~----~~g~~i~~~al~~l~~~~~gdl------r~~~~ 208 (367)
T PRK14970 144 ATTEKH-----KIIPTILSRCQIFDFKRITIKDIKEHLAGIAV----KEGIKFEDDALHIIAQKADGAL------RDALS 208 (367)
T ss_pred EeCCcc-----cCCHHHHhcceeEecCCccHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHhCCCCH------HHHHH
Confidence 666544 67789999999999999999999999988776 6788999999999999877533 36666
Q ss_pred HHHHHhhH
Q 003088 509 LVDEAGSR 516 (849)
Q Consensus 509 ll~~a~~~ 516 (849)
.++..+..
T Consensus 209 ~lekl~~y 216 (367)
T PRK14970 209 IFDRVVTF 216 (367)
T ss_pred HHHHHHHh
Confidence 66665543
No 126
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=5.4e-15 Score=173.59 Aligned_cols=200 Identities=20% Similarity=0.177 Sum_probs=150.8
Q ss_pred hhhHHHHhhcCCCCccccHHHHHHHHHHHhcCC-CCCCeEeCCCCChHHHHHHHHHHHhhhCCCCc----ccc-------
Q 003088 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRT-KNNPILLGESGVGKTAIAEGLAIRIVQAEVPV----FLL------- 345 (849)
Q Consensus 278 ~~l~~~~~~~~l~~iiG~~~~i~~l~~~l~~~~-~~niLL~GppGtGKT~la~~la~~l~~~~~p~----~~~------- 345 (849)
.+|.++|||..|++++|++..+..|..++...+ ..++||+||+|+|||++|+.+|+.+.+..... ...
T Consensus 4 ~pl~~kyRP~~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~ 83 (620)
T PRK14948 4 EPLHHKYRPQRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRA 83 (620)
T ss_pred chHHHHhCCCcHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHH
Confidence 368899999999999999999999999887755 36789999999999999999999997632110 010
Q ss_pred -----CCeEEEeehhhhhccccccchHHHHHHHHHHHHHh----cCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHh
Q 003088 346 -----SKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLK 416 (849)
Q Consensus 346 -----~~~~~~l~~~~~~~~~~~~g~~e~~l~~l~~~~~~----~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~ 416 (849)
+..++.++.. .....+.++++++.+.. ++..|+||||+|.| +.++++.|+
T Consensus 84 i~~g~h~D~~ei~~~--------~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~L-------------t~~a~naLL 142 (620)
T PRK14948 84 IAAGNALDVIEIDAA--------SNTGVDNIRELIERAQFAPVQARWKVYVIDECHML-------------STAAFNALL 142 (620)
T ss_pred HhcCCCccEEEEecc--------ccCCHHHHHHHHHHHhhChhcCCceEEEEECcccc-------------CHHHHHHHH
Confidence 1122232211 11223456666665543 34579999999999 456788999
Q ss_pred hhhcC--CCeEEEEccChHHHHHHhhccHHHHhccccEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhh
Q 003088 417 PSLGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSA 494 (849)
Q Consensus 417 ~~le~--~~i~vI~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~ 494 (849)
.++|+ +.+++|++|+... .+.+.+++||+.+.|..++.++....|..++. ..++.++++++..++..++
T Consensus 143 K~LEePp~~tvfIL~t~~~~-----~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~----kegi~is~~al~~La~~s~ 213 (620)
T PRK14948 143 KTLEEPPPRVVFVLATTDPQ-----RVLPTIISRCQRFDFRRIPLEAMVQHLSEIAE----KESIEIEPEALTLVAQRSQ 213 (620)
T ss_pred HHHhcCCcCeEEEEEeCChh-----hhhHHHHhheeEEEecCCCHHHHHHHHHHHHH----HhCCCCCHHHHHHHHHHcC
Confidence 99986 4678888887654 57789999999999999999998888887776 5678899999999999888
Q ss_pred cccccCcchhhHHHHHHHH
Q 003088 495 RYISDRYLPDKAIDLVDEA 513 (849)
Q Consensus 495 ~~~~~r~~p~~ai~ll~~a 513 (849)
+.+ ..|+.+++..
T Consensus 214 G~l------r~A~~lLekl 226 (620)
T PRK14948 214 GGL------RDAESLLDQL 226 (620)
T ss_pred CCH------HHHHHHHHHH
Confidence 644 4666666653
No 127
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.63 E-value=4.3e-15 Score=163.43 Aligned_cols=201 Identities=17% Similarity=0.219 Sum_probs=144.3
Q ss_pred hhhHHHHhhcCCCCccccHHHHHHHHHHHhcCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhh
Q 003088 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLL 357 (849)
Q Consensus 278 ~~l~~~~~~~~l~~iiG~~~~i~~l~~~l~~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~ 357 (849)
..|.++|||..|++++|+++.++.+..++.....++++|+||||+|||++++.+++.+..... ...++.++.+..
T Consensus 5 ~~w~~kyrP~~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~-----~~~~i~~~~~~~ 79 (319)
T PRK00440 5 EIWVEKYRPRTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGEDW-----RENFLELNASDE 79 (319)
T ss_pred CccchhhCCCcHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCcc-----ccceEEeccccc
Confidence 469999999999999999999999999998877788999999999999999999999854321 122333332211
Q ss_pred hccccccchHHHHHHHHHHHHHh--cCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcC--CCeEEEEccChH
Q 003088 358 MAGAKERGELEARVTTLISEIQK--SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--GELQCIASTTQD 433 (849)
Q Consensus 358 ~~~~~~~g~~e~~l~~l~~~~~~--~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~--~~i~vI~at~~~ 433 (849)
. ....+...+..+...... ....+++|||+|.+. .+.++.|..+++. ....+|.+++..
T Consensus 80 ~----~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~-------------~~~~~~L~~~le~~~~~~~lIl~~~~~ 142 (319)
T PRK00440 80 R----GIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLT-------------SDAQQALRRTMEMYSQNTRFILSCNYS 142 (319)
T ss_pred c----chHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCC-------------HHHHHHHHHHHhcCCCCCeEEEEeCCc
Confidence 0 011112222222221111 235699999999992 2345667777763 445666666654
Q ss_pred HHHHHhhccHHHHhccccEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhcccccCcchhhHHHHHHHH
Q 003088 434 EHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEA 513 (849)
Q Consensus 434 ~~~~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~~~r~~p~~ai~ll~~a 513 (849)
. .+.+++.+|+..+.|++++.++...+++..+. ..++.++++++..++..+.+.+ ..+++.++.+
T Consensus 143 ~-----~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~----~~~~~i~~~al~~l~~~~~gd~------r~~~~~l~~~ 207 (319)
T PRK00440 143 S-----KIIDPIQSRCAVFRFSPLKKEAVAERLRYIAE----NEGIEITDDALEAIYYVSEGDM------RKAINALQAA 207 (319)
T ss_pred c-----ccchhHHHHhheeeeCCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHcCCCH------HHHHHHHHHH
Confidence 3 55678999999999999999999999988776 5688999999999999887654 4677777765
Q ss_pred hh
Q 003088 514 GS 515 (849)
Q Consensus 514 ~~ 515 (849)
+.
T Consensus 208 ~~ 209 (319)
T PRK00440 208 AA 209 (319)
T ss_pred HH
Confidence 54
No 128
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=1.9e-14 Score=163.05 Aligned_cols=206 Identities=21% Similarity=0.350 Sum_probs=160.0
Q ss_pred HhHHHHHHHhHhCCCcccCCHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchH
Q 003088 594 PDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673 (849)
Q Consensus 594 ~~~i~~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt 673 (849)
..-++..++.+..+|+..-+. +...+...+..|.++-.|.+++++.|...+.-.... +.-..|+ +||+||||+|||
T Consensus 289 ~~ViRnYlDwll~lPW~~~sk-~~~Dl~~a~~iLd~dHYGLekVKeRIlEyLAV~~l~-~~~kGpI--LcLVGPPGVGKT 364 (782)
T COG0466 289 ATVIRNYLDWLLDLPWGKRSK-DKLDLKKAEKILDKDHYGLEKVKERILEYLAVQKLT-KKLKGPI--LCLVGPPGVGKT 364 (782)
T ss_pred HHHHHHHHHHHHhCCCccccc-hhhhHHHHHHHhcccccCchhHHHHHHHHHHHHHHh-ccCCCcE--EEEECCCCCCch
Confidence 445677888888888877554 567778888999999999999999998877543221 1113344 899999999999
Q ss_pred HHHHHHHHHhcCCCCceeEeeccccccccccccccCCCCCccccccCcchhHHHHhC--CCeEEEEeCccccCHH----H
Q 003088 674 ELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRRR--PFTLLLLDEIEKAHPD----I 747 (849)
Q Consensus 674 ~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~i~~~--~~~vl~lDEid~l~~~----~ 747 (849)
.+++.||+.+ +..|+++....+.+ .+.+-|+..-|+|.-.+..+.. ++++ .+-|++|||||++..+ =
T Consensus 365 SLgkSIA~al---~RkfvR~sLGGvrD---EAEIRGHRRTYIGamPGrIiQ~-mkka~~~NPv~LLDEIDKm~ss~rGDP 437 (782)
T COG0466 365 SLGKSIAKAL---GRKFVRISLGGVRD---EAEIRGHRRTYIGAMPGKIIQG-MKKAGVKNPVFLLDEIDKMGSSFRGDP 437 (782)
T ss_pred hHHHHHHHHh---CCCEEEEecCcccc---HHHhccccccccccCChHHHHH-HHHhCCcCCeEEeechhhccCCCCCCh
Confidence 9999999998 55799999887765 5667888888999887655444 3333 2569999999999765 3
Q ss_pred HHHHHHHhhc---CeeecCC-CceeecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCCh
Q 003088 748 FNILLQVFED---GHLTDSH-GRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRP 823 (849)
Q Consensus 748 ~~~Ll~~le~---g~~~~~~-g~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~p 823 (849)
..+||.+||- ..|.|+- .-..+.++++||+|+|.-. .++.
T Consensus 438 aSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~------------------------------------tIP~ 481 (782)
T COG0466 438 ASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLD------------------------------------TIPA 481 (782)
T ss_pred HHHHHhhcCHhhcCchhhccccCccchhheEEEeecCccc------------------------------------cCCh
Confidence 5789999974 4466653 4456788999999999721 1678
Q ss_pred HHhhccccEEEcCCCCHHHHcccc
Q 003088 824 ELLNRIDEVVVFRSLEKAQVCQLP 847 (849)
Q Consensus 824 ell~R~d~~i~f~pl~~~~~~~I~ 847 (849)
+|++|+ ++|.+..|++++-.+|.
T Consensus 482 PLlDRM-EiI~lsgYt~~EKl~IA 504 (782)
T COG0466 482 PLLDRM-EVIRLSGYTEDEKLEIA 504 (782)
T ss_pred HHhcce-eeeeecCCChHHHHHHH
Confidence 999999 89999999999887775
No 129
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.62 E-value=2.5e-15 Score=160.08 Aligned_cols=164 Identities=21% Similarity=0.373 Sum_probs=115.6
Q ss_pred ccccccHHHHHHHHHHHH-------HhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcC----CCCceeEeeccc
Q 003088 629 KRVIGQDEAVAAISRAVK-------RSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFG----SESSMLRLDMSE 697 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~-------~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~----~~~~~i~i~~~~ 697 (849)
+.++|+++++++|...+. +...|...+.. ..|++|+||||||||++|+++|+.++. ...+++.+++++
T Consensus 6 ~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~-~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~ 84 (261)
T TIGR02881 6 SRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQ-VLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERAD 84 (261)
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC-cceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHH
Confidence 458999999988865432 22355554333 357999999999999999999998743 223566666655
Q ss_pred cccccccccccCCCCCccccccCcchhHHHHhCCCeEEEEeCccccC--------HHHHHHHHHHhhcCeeecCCCceee
Q 003088 698 YMERHTVSKLIGSPPGYVGYEEGGLLTEAIRRRPFTLLLLDEIEKAH--------PDIFNILLQVFEDGHLTDSHGRRVS 769 (849)
Q Consensus 698 ~~~~~~~~~l~g~~~g~vg~~~~~~l~~~i~~~~~~vl~lDEid~l~--------~~~~~~Ll~~le~g~~~~~~g~~~~ 769 (849)
+. | .|+|... ..+.+.+.++.++||||||+|.+. .++++.|++.|+++.
T Consensus 85 l~---------~---~~~g~~~-~~~~~~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~---------- 141 (261)
T TIGR02881 85 LV---------G---EYIGHTA-QKTREVIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNR---------- 141 (261)
T ss_pred hh---------h---hhccchH-HHHHHHHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccC----------
Confidence 43 2 2444432 344566777788999999999875 468899999998732
Q ss_pred cCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHHHccccC
Q 003088 770 FKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQLPL 848 (849)
Q Consensus 770 ~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~I~~ 848 (849)
.++++|++++... +. . ...++|+|.+||+..|.|++|+.+++.+|++
T Consensus 142 -~~~~vila~~~~~--~~-----------------------~------~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~ 188 (261)
T TIGR02881 142 -NEFVLILAGYSDE--MD-----------------------Y------FLSLNPGLRSRFPISIDFPDYTVEELMEIAE 188 (261)
T ss_pred -CCEEEEecCCcch--hH-----------------------H------HHhcChHHHhccceEEEECCCCHHHHHHHHH
Confidence 3567777765421 00 0 0016799999999999999999999988864
No 130
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.62 E-value=1.6e-14 Score=151.15 Aligned_cols=178 Identities=13% Similarity=0.151 Sum_probs=125.7
Q ss_pred CCCcc-c-cHHHHHHHHHHHhcCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhccccccch
Q 003088 289 IDPVI-G-RETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGE 366 (849)
Q Consensus 289 l~~ii-G-~~~~i~~l~~~l~~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~~~~~~g~ 366 (849)
|++++ | +...+..+..+......++++|+||+|||||++++++++.+... +..+..+++.....
T Consensus 21 fd~f~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~-------~~~v~y~~~~~~~~------- 86 (235)
T PRK08084 21 FASFYPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQR-------GRAVGYVPLDKRAW------- 86 (235)
T ss_pred ccccccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhC-------CCeEEEEEHHHHhh-------
Confidence 45444 3 45566666666666667899999999999999999999987543 44555555544221
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCCCeEEEEccChHHHHHHhhccHHHH
Q 003088 367 LEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALA 446 (849)
Q Consensus 367 ~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~~i~vI~at~~~~~~~~~~~d~al~ 446 (849)
....+++.+.+. .+|||||+|.+.+.. .....+++++....++++..+|+|++... ..+-...+.|+
T Consensus 87 ---~~~~~~~~~~~~--dlliiDdi~~~~~~~-------~~~~~lf~l~n~~~e~g~~~li~ts~~~p-~~l~~~~~~L~ 153 (235)
T PRK08084 87 ---FVPEVLEGMEQL--SLVCIDNIECIAGDE-------LWEMAIFDLYNRILESGRTRLLITGDRPP-RQLNLGLPDLA 153 (235)
T ss_pred ---hhHHHHHHhhhC--CEEEEeChhhhcCCH-------HHHHHHHHHHHHHHHcCCCeEEEeCCCCh-HHcCcccHHHH
Confidence 112222333322 489999999994321 22445678888888888777777766443 22333679999
Q ss_pred hcc---ccEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhccc
Q 003088 447 RRF---QPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497 (849)
Q Consensus 447 ~Rf---~~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~ 497 (849)
+|| ..+.+.+|+.+++.++|+..+. ..++.++++++++++..+.+-.
T Consensus 154 SRl~~g~~~~l~~~~~~~~~~~l~~~a~----~~~~~l~~~v~~~L~~~~~~d~ 203 (235)
T PRK08084 154 SRLDWGQIYKLQPLSDEEKLQALQLRAR----LRGFELPEDVGRFLLKRLDREM 203 (235)
T ss_pred HHHhCCceeeecCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHhhcCCH
Confidence 999 5799999999999999987665 4579999999999999888754
No 131
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.62 E-value=1.6e-15 Score=181.97 Aligned_cols=179 Identities=17% Similarity=0.250 Sum_probs=138.3
Q ss_pred hccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccccc
Q 003088 628 KKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKL 707 (849)
Q Consensus 628 ~~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l 707 (849)
.+.++|.+.++..+...+...... ..+|||+|++||||+++|++||+...+.+.+|+.+||..+......+.+
T Consensus 324 ~~~l~g~s~~~~~~~~~~~~~a~~-------~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~~~~~el 396 (638)
T PRK11388 324 FDHMPQDSPQMRRLIHFGRQAAKS-------SFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEALAEEF 396 (638)
T ss_pred ccceEECCHHHHHHHHHHHHHhCc-------CCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChHHHHHHh
Confidence 356899999999888888775322 1239999999999999999999998777889999999998876666788
Q ss_pred cCCCCCccccccCcchhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCchhhh
Q 003088 708 IGSPPGYVGYEEGGLLTEAIRRRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIA 787 (849)
Q Consensus 708 ~g~~~g~vg~~~~~~l~~~i~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~ 787 (849)
||...+ .... ...+.+..+.+|+||||||+.+++.+|..|+++|+++.+...++......+++||+||+.+...+.
T Consensus 397 fg~~~~---~~~~-~~~g~~~~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~~l~~~~ 472 (638)
T PRK11388 397 LGSDRT---DSEN-GRLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTADLAMLV 472 (638)
T ss_pred cCCCCc---CccC-CCCCceeECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccCCHHHHH
Confidence 885421 1111 112234566789999999999999999999999999998876655444458999999999876655
Q ss_pred cccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccc-cEEEcCCCCH--HHHccc
Q 003088 788 KGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRID-EVVVFRSLEK--AQVCQL 846 (849)
Q Consensus 788 ~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d-~~i~f~pl~~--~~~~~I 846 (849)
..+. |+++|++||. ..|..|||.+ +|+..+
T Consensus 473 ~~~~-----------------------------f~~dL~~~l~~~~i~lPpLreR~~Di~~L 505 (638)
T PRK11388 473 EQNR-----------------------------FSRQLYYALHAFEITIPPLRMRREDIPAL 505 (638)
T ss_pred hcCC-----------------------------ChHHHhhhhceeEEeCCChhhhhhHHHHH
Confidence 4443 8999999996 5677888874 345443
No 132
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.61 E-value=5.8e-13 Score=163.18 Aligned_cols=182 Identities=19% Similarity=0.247 Sum_probs=125.8
Q ss_pred CCccccHHHHHHHHHHHhcC-------CC--CCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhc-
Q 003088 290 DPVIGRETEIQRIIQILCRR-------TK--NNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA- 359 (849)
Q Consensus 290 ~~iiG~~~~i~~l~~~l~~~-------~~--~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~- 359 (849)
+.++||++.++.+...+.+. .+ .++||+||+|||||++|++||+.+... ...++.+|++.+..
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~-------~~~~~~~d~s~~~~~ 581 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGS-------EDAMIRLDMSEYMEK 581 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCC-------ccceEEEEchhcccc
Confidence 46899999999998877431 11 246999999999999999999998543 23456666655421
Q ss_pred -------c--ccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCCC-------
Q 003088 360 -------G--AKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGE------- 423 (849)
Q Consensus 360 -------~--~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~~------- 423 (849)
| ..|.|--+ ...+.+.++..+.+|++|||+|.+ ..++++.|+++++.|.
T Consensus 582 ~~~~~l~g~~~gyvg~~~--~~~l~~~~~~~p~~VvllDeieka-------------~~~v~~~Llq~le~g~~~d~~g~ 646 (821)
T CHL00095 582 HTVSKLIGSPPGYVGYNE--GGQLTEAVRKKPYTVVLFDEIEKA-------------HPDIFNLLLQILDDGRLTDSKGR 646 (821)
T ss_pred ccHHHhcCCCCcccCcCc--cchHHHHHHhCCCeEEEECChhhC-------------CHHHHHHHHHHhccCceecCCCc
Confidence 1 11222111 123445555666789999999988 5678999999998653
Q ss_pred ------eEEEEccChHH-----------------------HHHH---------hhccHHHHhccc-cEEecCCCHHHHHH
Q 003088 424 ------LQCIASTTQDE-----------------------HRTQ---------FEKDKALARRFQ-PVLISEPSQEDAVR 464 (849)
Q Consensus 424 ------i~vI~at~~~~-----------------------~~~~---------~~~d~al~~Rf~-~i~~~~ps~~e~~~ 464 (849)
.++|+|||... |... ....|.|.+|++ .|.|.+++.++..+
T Consensus 647 ~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~ 726 (821)
T CHL00095 647 TIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWE 726 (821)
T ss_pred EEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHH
Confidence 46788877421 0000 013478889995 79999999999999
Q ss_pred HHHHHHHHHH---hhc--CCccCHHHHHHHHHhh
Q 003088 465 ILLGLREKYE---AHH--NCKFTLEAINAAVHLS 493 (849)
Q Consensus 465 iL~~~~~~~~---~~~--~~~i~~~~l~~~a~ls 493 (849)
|+...+.++. ... .+.++++++..++...
T Consensus 727 Iv~~~l~~l~~rl~~~~i~l~~~~~~~~~La~~~ 760 (821)
T CHL00095 727 IAEIMLKNLFKRLNEQGIQLEVTERIKTLLIEEG 760 (821)
T ss_pred HHHHHHHHHHHHHHHCCcEEEECHHHHHHHHHhc
Confidence 9987665432 122 4678999999888753
No 133
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=4.6e-15 Score=168.99 Aligned_cols=203 Identities=21% Similarity=0.278 Sum_probs=144.7
Q ss_pred cCCCCccccHHHHHHHHHHH---hc---------CCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeeh
Q 003088 287 ELIDPVIGRETEIQRIIQIL---CR---------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM 354 (849)
Q Consensus 287 ~~l~~iiG~~~~i~~l~~~l---~~---------~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~ 354 (849)
.+|.++.|.++..+.+.+++ .. +-+..++|+||||||||.+|+++|.+. +.+++.+.-
T Consensus 147 v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA----------~VPFf~iSG 216 (596)
T COG0465 147 VTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEA----------GVPFFSISG 216 (596)
T ss_pred cChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhccc----------CCCceeccc
Confidence 46889999998777766654 32 235789999999999999999999887 556666666
Q ss_pred hhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCC-CccHHHHHHHhhhhc----CCCeEEEEc
Q 003088 355 GLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNK-GTGLDISNLLKPSLG----RGELQCIAS 429 (849)
Q Consensus 355 ~~~~~~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~-~~~~~~~~~L~~~le----~~~i~vI~a 429 (849)
++++. .+.|--..+++.+|.++++..|||+||||+|.+-..+..+.|.. +.-....|.|+-.++ +..+++|++
T Consensus 217 S~FVe--mfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaa 294 (596)
T COG0465 217 SDFVE--MFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAA 294 (596)
T ss_pred hhhhh--hhcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEec
Confidence 66652 33444456799999999999999999999999965554432211 111123444444443 346999999
Q ss_pred cChHHHHHHhhccHHHHh--ccc-cEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHH-HHHHHHHhhhcccccCcchhh
Q 003088 430 TTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLE-AINAAVHLSARYISDRYLPDK 505 (849)
Q Consensus 430 t~~~~~~~~~~~d~al~~--Rf~-~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~-~l~~~a~ls~~~~~~r~~p~~ 505 (849)
||.++ -+|++|.| ||+ .|.++.|+...|.+||+-.... ..++++ .+..+++.+.+|.. .+
T Consensus 295 TNRpd-----VlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~------~~l~~~Vdl~~iAr~tpGfsG-----Ad 358 (596)
T COG0465 295 TNRPD-----VLDPALLRPGRFDRQILVELPDIKGREQILKVHAKN------KPLAEDVDLKKIARGTPGFSG-----AD 358 (596)
T ss_pred CCCcc-----cchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhc------CCCCCcCCHHHHhhhCCCccc-----ch
Confidence 99998 88999999 997 6999999999999999855442 222211 13346666666543 57
Q ss_pred HHHHHHHHhhHH
Q 003088 506 AIDLVDEAGSRA 517 (849)
Q Consensus 506 ai~ll~~a~~~~ 517 (849)
...++.+|+-.+
T Consensus 359 L~nl~NEAal~a 370 (596)
T COG0465 359 LANLLNEAALLA 370 (596)
T ss_pred HhhhHHHHHHHH
Confidence 778887776554
No 134
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.61 E-value=1.6e-14 Score=173.87 Aligned_cols=206 Identities=21% Similarity=0.324 Sum_probs=154.2
Q ss_pred HhHHHHHHHhHhCCCcccCCHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchH
Q 003088 594 PDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673 (849)
Q Consensus 594 ~~~i~~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt 673 (849)
..-+...++.+..+|+...+.+ ...+...+..|.+..+|++.+++.|...+..... ......+ .++|+||||||||
T Consensus 288 ~~~~~~yl~~~~~~pw~~~~~~-~~~~~~~~~~l~~~~~g~~~vK~~i~~~l~~~~~-~~~~~g~--~i~l~GppG~GKT 363 (784)
T PRK10787 288 ATVVRGYIDWMVQVPWNARSKV-KKDLRQAQEILDTDHYGLERVKDRILEYLAVQSR-VNKIKGP--ILCLVGPPGVGKT 363 (784)
T ss_pred HHHHHHHHHHHHhCCCCCCCcc-cccHHHHHHHhhhhccCHHHHHHHHHHHHHHHHh-cccCCCc--eEEEECCCCCCHH
Confidence 3446677778888998876654 5677888899999999999999999877764221 1111222 4999999999999
Q ss_pred HHHHHHHHHhcCCCCceeEeeccccccccccccccCCCCCccccccCcchhHHHHhC--CCeEEEEeCccccCHHH----
Q 003088 674 ELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRRR--PFTLLLLDEIEKAHPDI---- 747 (849)
Q Consensus 674 ~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~i~~~--~~~vl~lDEid~l~~~~---- 747 (849)
++++.++..+ +.++++++++...+ ...+.|....|+|...+. +...+... .+.|++|||+|+++++.
T Consensus 364 tl~~~ia~~l---~~~~~~i~~~~~~d---~~~i~g~~~~~~g~~~G~-~~~~l~~~~~~~~villDEidk~~~~~~g~~ 436 (784)
T PRK10787 364 SLGQSIAKAT---GRKYVRMALGGVRD---EAEIRGHRRTYIGSMPGK-LIQKMAKVGVKNPLFLLDEIDKMSSDMRGDP 436 (784)
T ss_pred HHHHHHHHHh---CCCEEEEEcCCCCC---HHHhccchhccCCCCCcH-HHHHHHhcCCCCCEEEEEChhhcccccCCCH
Confidence 9999999987 45688888776544 345566655677766543 44444432 35699999999999875
Q ss_pred HHHHHHHhhcC---eeecCC-CceeecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCCh
Q 003088 748 FNILLQVFEDG---HLTDSH-GRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRP 823 (849)
Q Consensus 748 ~~~Ll~~le~g---~~~~~~-g~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~p 823 (849)
++.|+++||.+ .+.|.. .-.++.++++||+|+|.-. ++|
T Consensus 437 ~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~~-------------------------------------i~~ 479 (784)
T PRK10787 437 ASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMN-------------------------------------IPA 479 (784)
T ss_pred HHHHHHHhccccEEEEecccccccccCCceEEEEcCCCCC-------------------------------------CCH
Confidence 59999999975 355543 3346778999999998620 789
Q ss_pred HHhhccccEEEcCCCCHHHHccccC
Q 003088 824 ELLNRIDEVVVFRSLEKAQVCQLPL 848 (849)
Q Consensus 824 ell~R~d~~i~f~pl~~~~~~~I~~ 848 (849)
+|++|+ .+|.|.+|+.+++.+|++
T Consensus 480 aLl~R~-~ii~~~~~t~eek~~Ia~ 503 (784)
T PRK10787 480 PLLDRM-EVIRLSGYTEDEKLNIAK 503 (784)
T ss_pred HHhcce-eeeecCCCCHHHHHHHHH
Confidence 999999 689999999999998864
No 135
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.61 E-value=1.4e-14 Score=170.60 Aligned_cols=201 Identities=19% Similarity=0.204 Sum_probs=146.1
Q ss_pred hhHHHHhhcCCCCccccHHHHHHHHHHHhcCCCCC-CeEeCCCCChHHHHHHHHHHHhhhCCC-Cc--ccc---------
Q 003088 279 DLTARASEELIDPVIGRETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEV-PV--FLL--------- 345 (849)
Q Consensus 279 ~l~~~~~~~~l~~iiG~~~~i~~l~~~l~~~~~~n-iLL~GppGtGKT~la~~la~~l~~~~~-p~--~~~--------- 345 (849)
.|.++|||.+|+++||++..++.|..++..++..| +||+||+|+|||++|+.+|+.+.+... +. .+.
T Consensus 5 ~l~~kyRP~~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~ 84 (585)
T PRK14950 5 VLYRKWRSQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIA 84 (585)
T ss_pred HHHHHhCCCCHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHh
Confidence 47899999999999999999999999888766666 489999999999999999999864221 10 000
Q ss_pred ---CCeEEEeehhhhhccccccchHHHHHHHHHHHHHh----cCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhh
Q 003088 346 ---SKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPS 418 (849)
Q Consensus 346 ---~~~~~~l~~~~~~~~~~~~g~~e~~l~~l~~~~~~----~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~ 418 (849)
+..++.++.. ...+ .+.++.+.+.+.. +...|+||||+|.| +.+.++.|+.+
T Consensus 85 ~~~~~d~~~i~~~------~~~~--vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L-------------~~~a~naLLk~ 143 (585)
T PRK14950 85 EGSAVDVIEMDAA------SHTS--VDDAREIIERVQFRPALARYKVYIIDEVHML-------------STAAFNALLKT 143 (585)
T ss_pred cCCCCeEEEEecc------ccCC--HHHHHHHHHHHhhCcccCCeEEEEEeChHhC-------------CHHHHHHHHHH
Confidence 1123333221 1111 1224444444432 34579999999999 34567888888
Q ss_pred hcC--CCeEEEEccChHHHHHHhhccHHHHhccccEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhcc
Q 003088 419 LGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496 (849)
Q Consensus 419 le~--~~i~vI~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~ 496 (849)
+++ ...++|++++... .+.+.+++||+.+.|..++.++...++..++. ..++.++++++..++..+.+.
T Consensus 144 LEepp~~tv~Il~t~~~~-----kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~----~egl~i~~eal~~La~~s~Gd 214 (585)
T PRK14950 144 LEEPPPHAIFILATTEVH-----KVPATILSRCQRFDFHRHSVADMAAHLRKIAA----AEGINLEPGALEAIARAATGS 214 (585)
T ss_pred HhcCCCCeEEEEEeCChh-----hhhHHHHhccceeeCCCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHcCCC
Confidence 886 4567777666543 56688999999999999999999999987776 568889999999999888764
Q ss_pred cccCcchhhHHHHHHHHhh
Q 003088 497 ISDRYLPDKAIDLVDEAGS 515 (849)
Q Consensus 497 ~~~r~~p~~ai~ll~~a~~ 515 (849)
. ..++..++..+.
T Consensus 215 l------r~al~~LekL~~ 227 (585)
T PRK14950 215 M------RDAENLLQQLAT 227 (585)
T ss_pred H------HHHHHHHHHHHH
Confidence 3 466676665443
No 136
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=1.8e-13 Score=159.77 Aligned_cols=183 Identities=20% Similarity=0.259 Sum_probs=130.2
Q ss_pred CCccccHHHHHHHHHHHhcC---------CCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhc-
Q 003088 290 DPVIGRETEIQRIIQILCRR---------TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA- 359 (849)
Q Consensus 290 ~~iiG~~~~i~~l~~~l~~~---------~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~- 359 (849)
..+|||++.+..+...+.+. ...+.||.||+|||||.+|++||..+... ...++.+||+.+..
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~-------e~aliR~DMSEy~Ek 563 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGD-------EQALIRIDMSEYMEK 563 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCC-------CccceeechHHHHHH
Confidence 46999999999999987442 22467999999999999999999999654 35667888877541
Q ss_pred ---------cccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCCC-------
Q 003088 360 ---------GAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGE------- 423 (849)
Q Consensus 360 ---------~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~~------- 423 (849)
...|.| +++ =..+-+.++..+.+|+++|||+.- ..++.|+|+++++.|.
T Consensus 564 HsVSrLIGaPPGYVG-yee-GG~LTEaVRr~PySViLlDEIEKA-------------HpdV~nilLQVlDdGrLTD~~Gr 628 (786)
T COG0542 564 HSVSRLIGAPPGYVG-YEE-GGQLTEAVRRKPYSVILLDEIEKA-------------HPDVFNLLLQVLDDGRLTDGQGR 628 (786)
T ss_pred HHHHHHhCCCCCCce-ecc-ccchhHhhhcCCCeEEEechhhhc-------------CHHHHHHHHHHhcCCeeecCCCC
Confidence 122333 111 123445566677789999999988 6799999999998654
Q ss_pred ------eEEEEccChHH--------------HH---H----H--hhccHHHHhccc-cEEecCCCHHHHHHHHHHHHHHH
Q 003088 424 ------LQCIASTTQDE--------------HR---T----Q--FEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKY 473 (849)
Q Consensus 424 ------i~vI~at~~~~--------------~~---~----~--~~~d~al~~Rf~-~i~~~~ps~~e~~~iL~~~~~~~ 473 (849)
.++|+|+|--. +. . . ....|.|++|++ .|.|.+++.++..+|+.....+.
T Consensus 629 ~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~l 708 (786)
T COG0542 629 TVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNRL 708 (786)
T ss_pred EEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHHH
Confidence 36777776321 00 0 0 012378888997 79999999999999988765543
Q ss_pred H-----hhcCCccCHHHHHHHHHhhh
Q 003088 474 E-----AHHNCKFTLEAINAAVHLSA 494 (849)
Q Consensus 474 ~-----~~~~~~i~~~~l~~~a~ls~ 494 (849)
. ....+.+++++...++....
T Consensus 709 ~~~L~~~~i~l~~s~~a~~~l~~~gy 734 (786)
T COG0542 709 AKRLAERGITLELSDEAKDFLAEKGY 734 (786)
T ss_pred HHHHHhCCceEEECHHHHHHHHHhcc
Confidence 2 23456789999888776543
No 137
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.61 E-value=3.2e-15 Score=163.28 Aligned_cols=191 Identities=25% Similarity=0.371 Sum_probs=132.2
Q ss_pred HHHHHHHHhccccccHHHHHHHHHHHHHh--hcCCC----CCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEe
Q 003088 620 LVGLEEQLKKRVIGQDEAVAAISRAVKRS--RVGLK----DPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRL 693 (849)
Q Consensus 620 ~~~l~~~l~~~i~Gq~~~i~~l~~~l~~~--~~g~~----~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i 693 (849)
+..+...|.+.|+||+++++.+..++... +.+.. .+..| .++||+||||||||++|++||..+ +.+|+.+
T Consensus 3 P~~I~~~Ld~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p-~~ILLiGppG~GKT~lAraLA~~l---~~~fi~v 78 (441)
T TIGR00390 3 PREIVAELDKYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTP-KNILMIGPTGVGKTEIARRLAKLA---NAPFIKV 78 (441)
T ss_pred HHHHHHHHhhhccCHHHHHHHHHHHHHhhhhhhccccccccccCC-ceEEEECCCCCCHHHHHHHHHHHh---CCeEEEe
Confidence 56778889999999999999999888753 22222 12223 579999999999999999999997 6789999
Q ss_pred eccccccc-ccc-------ccccCC--------------------------------CCCccc-----------------
Q 003088 694 DMSEYMER-HTV-------SKLIGS--------------------------------PPGYVG----------------- 716 (849)
Q Consensus 694 ~~~~~~~~-~~~-------~~l~g~--------------------------------~~g~vg----------------- 716 (849)
|+..+.+. +.. ..++.. ...+.|
T Consensus 79 dat~~~e~g~vG~dvE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~ 158 (441)
T TIGR00390 79 EATKFTEVGYVGRDVESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRK 158 (441)
T ss_pred ecceeecCCcccCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHH
Confidence 98766531 000 011000 000000
Q ss_pred -------------------------------ccc------------------------------------------Ccch
Q 003088 717 -------------------------------YEE------------------------------------------GGLL 723 (849)
Q Consensus 717 -------------------------------~~~------------------------------------------~~~l 723 (849)
... ....
T Consensus 159 ~l~~g~ldd~~iei~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~ 238 (441)
T TIGR00390 159 KLREGELDDKEIEIDVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIK 238 (441)
T ss_pred HHhcCCccCcEEEEeecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHH
Confidence 000 0001
Q ss_pred hHHHHh-CCCeEEEEeCccccCH------------HHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCchhhhccc
Q 003088 724 TEAIRR-RPFTLLLLDEIEKAHP------------DIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKGR 790 (849)
Q Consensus 724 ~~~i~~-~~~~vl~lDEid~l~~------------~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~~~~ 790 (849)
.+++.. ...||||||||||+.. .+|..||.++|...+.-.. ..++..++.||++.-+...
T Consensus 239 ~~a~~~~e~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~-~~v~T~~ILFI~~GAF~~~------ 311 (441)
T TIGR00390 239 QEAIDAVEQSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKY-GMVKTDHILFIAAGAFQLA------ 311 (441)
T ss_pred HHHHHHHHcCCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeeecc-eeEECCceeEEecCCcCCC------
Confidence 122233 4579999999999853 2999999999887666533 3678889999998765310
Q ss_pred CCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHHHcccc
Q 003088 791 HGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQLP 847 (849)
Q Consensus 791 ~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~I~ 847 (849)
.+ . .+-|||..||..++.+.||+.+++.+|+
T Consensus 312 --------kp--------------~----DlIPEl~GR~Pi~v~L~~L~~edL~rIL 342 (441)
T TIGR00390 312 --------KP--------------S----DLIPELQGRFPIRVELQALTTDDFERIL 342 (441)
T ss_pred --------Ch--------------h----hccHHHhCccceEEECCCCCHHHHHHHh
Confidence 00 0 1679999999999999999999999987
No 138
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=99.61 E-value=3e-13 Score=160.17 Aligned_cols=147 Identities=24% Similarity=0.353 Sum_probs=113.1
Q ss_pred ceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccccccCCC----CCccccccCcchhHHHHhCCCeEEEE
Q 003088 662 MLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSP----PGYVGYEEGGLLTEAIRRRPFTLLLL 737 (849)
Q Consensus 662 lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~----~g~vg~~~~~~l~~~i~~~~~~vl~l 737 (849)
+|+.||+.+|||.+...+|+.. +..|++++..+..+ ...++|+- .|...+. .|.+.+++++.- +++|
T Consensus 891 ~LiQGpTSSGKTSMI~yla~~t---ghkfVRINNHEHTd---lqeYiGTyvTdd~G~lsFk-EGvLVeAlR~Gy--WIVL 961 (4600)
T COG5271 891 LLIQGPTSSGKTSMILYLARET---GHKFVRINNHEHTD---LQEYIGTYVTDDDGSLSFK-EGVLVEALRRGY--WIVL 961 (4600)
T ss_pred EEEecCCCCCcchHHHHHHHHh---CccEEEecCcccch---HHHHhhceeecCCCceeee-hhHHHHHHhcCc--EEEe
Confidence 9999999999999999999985 55699999988765 44566641 2222233 257888887654 9999
Q ss_pred eCccccCHHHHHHHHHHhhcCe-eecCC--CceeecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHH
Q 003088 738 DEIEKAHPDIFNILLQVFEDGH-LTDSH--GRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVV 814 (849)
Q Consensus 738 DEid~l~~~~~~~Ll~~le~g~-~~~~~--g~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~ 814 (849)
||..-++-+++.+|-+++|+.+ +..+. .-.++++++++.+|-|++ .||.+
T Consensus 962 DELNLApTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNpp-----------g~YgG---------------- 1014 (4600)
T COG5271 962 DELNLAPTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPP-----------GGYGG---------------- 1014 (4600)
T ss_pred eccccCcHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCC-----------ccccc----------------
Confidence 9999999999999999998654 55554 334566799999999973 34443
Q ss_pred HHHHhhCChHHhhccccEEEcCCCCHHHHccccC
Q 003088 815 EELKAYFRPELLNRIDEVVVFRSLEKAQVCQLPL 848 (849)
Q Consensus 815 ~~l~~~~~pell~R~d~~i~f~pl~~~~~~~I~~ 848 (849)
++.+..+|.+|| .-+.|....+++++.|+.
T Consensus 1015 ---RK~LSrAFRNRF-lE~hFddipedEle~ILh 1044 (4600)
T COG5271 1015 ---RKGLSRAFRNRF-LEMHFDDIPEDELEEILH 1044 (4600)
T ss_pred ---hHHHHHHHHhhh-HhhhcccCcHHHHHHHHh
Confidence 334677888999 778899999999998863
No 139
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.60 E-value=1.2e-14 Score=172.90 Aligned_cols=204 Identities=19% Similarity=0.258 Sum_probs=143.7
Q ss_pred CCCCccccHHHHHHHHHHHh------------cCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehh
Q 003088 288 LIDPVIGRETEIQRIIQILC------------RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMG 355 (849)
Q Consensus 288 ~l~~iiG~~~~i~~l~~~l~------------~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~ 355 (849)
.++++.|.+...+++.+++. ...+.+++|+||||||||+++++++.++ +.+++.++.+
T Consensus 150 ~~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~----------~~~f~~is~~ 219 (644)
T PRK10733 150 TFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA----------KVPFFTISGS 219 (644)
T ss_pred cHHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc----------CCCEEEEehH
Confidence 35566676666665555431 1235679999999999999999999988 6677777776
Q ss_pred hhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCC-CCccHHHHHHHhhhhc----CCCeEEEEcc
Q 003088 356 LLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGN-KGTGLDISNLLKPSLG----RGELQCIAST 430 (849)
Q Consensus 356 ~~~~~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~-~~~~~~~~~~L~~~le----~~~i~vI~at 430 (849)
.+.. .+.|.....++.++..++...|+||||||+|.+...+..+.+. ........+.|+..++ +..+++|+||
T Consensus 220 ~~~~--~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaT 297 (644)
T PRK10733 220 DFVE--MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAAT 297 (644)
T ss_pred HhHH--hhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEec
Confidence 6653 3456677788999999988889999999999997654432111 1112224444444343 4568999999
Q ss_pred ChHHHHHHhhccHHHHh--ccc-cEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhcccccCcchhhHH
Q 003088 431 TQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAI 507 (849)
Q Consensus 431 ~~~~~~~~~~~d~al~~--Rf~-~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~~~r~~p~~ai 507 (849)
|..+ .+|+++.| ||+ .|.|+.|+.++|.+||+.+..+..... .+ .+..+++.+.+| .+.+..
T Consensus 298 N~p~-----~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~--~~---d~~~la~~t~G~-----sgadl~ 362 (644)
T PRK10733 298 NRPD-----VLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAP--DI---DAAIIARGTPGF-----SGADLA 362 (644)
T ss_pred CChh-----hcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCC--cC---CHHHHHhhCCCC-----CHHHHH
Confidence 9998 89999998 997 699999999999999988776332111 11 234455555554 456778
Q ss_pred HHHHHHhhHHH
Q 003088 508 DLVDEAGSRAH 518 (849)
Q Consensus 508 ~ll~~a~~~~~ 518 (849)
.++.+|...+.
T Consensus 363 ~l~~eAa~~a~ 373 (644)
T PRK10733 363 NLVNEAALFAA 373 (644)
T ss_pred HHHHHHHHHHH
Confidence 88888876544
No 140
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.59 E-value=7.8e-15 Score=177.00 Aligned_cols=174 Identities=18% Similarity=0.289 Sum_probs=136.9
Q ss_pred ccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeecccccccccccccc
Q 003088 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLI 708 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~ 708 (849)
..++|++.++..+...+....... .+|||+||+|||||++|++||......+.+|+.+||..+......+.+|
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~~~-------~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~~~~~lf 448 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQSD-------STVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLF 448 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhCCC-------CCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChhHhhhhhc
Confidence 468999999999998888753221 2499999999999999999999887778899999999887665666788
Q ss_pred CCCCCc-cccccCcchhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCchhhh
Q 003088 709 GSPPGY-VGYEEGGLLTEAIRRRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIA 787 (849)
Q Consensus 709 g~~~g~-vg~~~~~~l~~~i~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~ 787 (849)
|...+. .|... ...+.+..+.+|+||||||+.+++++|..|+++|+++.+...++......++++|++|+.+...+.
T Consensus 449 g~~~~~~~g~~~--~~~g~le~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~ 526 (686)
T PRK15429 449 GHERGAFTGASA--QRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMV 526 (686)
T ss_pred Cccccccccccc--chhhHHHhcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCCHHHHH
Confidence 864432 22111 122345667789999999999999999999999999988776665555568999999999876655
Q ss_pred cccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhcccc-EEEcCCCCH
Q 003088 788 KGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDE-VVVFRSLEK 840 (849)
Q Consensus 788 ~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~-~i~f~pl~~ 840 (849)
..+. |+++|++|+.. .|.+|||.+
T Consensus 527 ~~~~-----------------------------f~~~L~~~l~~~~i~lPpLre 551 (686)
T PRK15429 527 ADRE-----------------------------FRSDLYYRLNVFPIHLPPLRE 551 (686)
T ss_pred HcCc-----------------------------ccHHHHhccCeeEEeCCChhh
Confidence 4443 89999999974 677888873
No 141
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.58 E-value=7.3e-14 Score=164.82 Aligned_cols=213 Identities=21% Similarity=0.231 Sum_probs=145.0
Q ss_pred hhhhHHHHhhcCCCCccccHHHHHHHHHHHhcCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhh
Q 003088 277 CVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGL 356 (849)
Q Consensus 277 ~~~l~~~~~~~~l~~iiG~~~~i~~l~~~l~~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~ 356 (849)
..++.+.+||..|++++|++..++.+...+......+++|+||||||||++|+.+++............+..++.+++..
T Consensus 141 ~~~~~~~~rp~~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~ 220 (615)
T TIGR02903 141 HKSAQSLLRPRAFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTT 220 (615)
T ss_pred hhHHhhhcCcCcHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechh
Confidence 35788888999999999999999998888877777889999999999999999998776322111111234566666543
Q ss_pred hhccc-----cccch----HHHHHHHHHHH----------HHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhh
Q 003088 357 LMAGA-----KERGE----LEARVTTLISE----------IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKP 417 (849)
Q Consensus 357 ~~~~~-----~~~g~----~e~~l~~l~~~----------~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~ 417 (849)
+.... ...|. .....+..+.. +....+++|||||++.| ....++.|..
T Consensus 221 l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~L-------------d~~~Q~~Ll~ 287 (615)
T TIGR02903 221 LRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGEL-------------DPLLQNKLLK 287 (615)
T ss_pred ccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccC-------------CHHHHHHHHH
Confidence 21000 00000 00111111111 11233569999999998 4455666666
Q ss_pred hhcCC------------------------------CeEEEEccChHHHHHHhhccHHHHhccccEEecCCCHHHHHHHHH
Q 003088 418 SLGRG------------------------------ELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILL 467 (849)
Q Consensus 418 ~le~~------------------------------~i~vI~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL~ 467 (849)
+++.+ .+++|++|+... ..++++|++||..+.|++++.++...|++
T Consensus 288 ~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~----~~l~~aLrSR~~~i~~~pls~edi~~Il~ 363 (615)
T TIGR02903 288 VLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDP----EEINPALRSRCAEVFFEPLTPEDIALIVL 363 (615)
T ss_pred HHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccc----cccCHHHHhceeEEEeCCCCHHHHHHHHH
Confidence 66543 257777777643 26789999999999999999999999999
Q ss_pred HHHHHHHhhcCCccCHHHHHHHHHhhhcccccCcchhhHHHHHHHHhhHH
Q 003088 468 GLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRA 517 (849)
Q Consensus 468 ~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~~~r~~p~~ai~ll~~a~~~~ 517 (849)
..+. ..++.++++++..++.++. . ..++++.+..++..+
T Consensus 364 ~~a~----~~~v~ls~eal~~L~~ys~---~----gRraln~L~~~~~~~ 402 (615)
T TIGR02903 364 NAAE----KINVHLAAGVEELIARYTI---E----GRKAVNILADVYGYA 402 (615)
T ss_pred HHHH----HcCCCCCHHHHHHHHHCCC---c----HHHHHHHHHHHHHHH
Confidence 8776 3467789998888777543 1 147778777776554
No 142
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.58 E-value=1.5e-14 Score=137.12 Aligned_cols=123 Identities=26% Similarity=0.392 Sum_probs=98.8
Q ss_pred CeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhccccccchHHHHHHHHHHHHHhcC-CeEEEEcCcc
Q 003088 314 PILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSG-DVILFIDEVH 392 (849)
Q Consensus 314 iLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~~~~~~g~~e~~l~~l~~~~~~~~-~~ILfIDEi~ 392 (849)
+||+||||||||++|+.+|+.+ +.+++.++...+. ..+.++.+..+..++++++... ++||||||+|
T Consensus 1 ill~G~~G~GKT~l~~~la~~l----------~~~~~~i~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d 68 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL----------GFPFIEIDGSELI--SSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEID 68 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT----------TSEEEEEETTHHH--TSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGG
T ss_pred CEEECcCCCCeeHHHHHHHhhc----------ccccccccccccc--cccccccccccccccccccccccceeeeeccch
Confidence 5899999999999999999998 7789999998887 3457889999999999998876 8999999999
Q ss_pred hhhhCCCCCCCCCCccHHHHHHHhhhhcC-----CCeEEEEccChHHHHHHhhccHHHH-hccc-cEEec
Q 003088 393 TLIGSGTVGRGNKGTGLDISNLLKPSLGR-----GELQCIASTTQDEHRTQFEKDKALA-RRFQ-PVLIS 455 (849)
Q Consensus 393 ~l~~~~~~~~~~~~~~~~~~~~L~~~le~-----~~i~vI~at~~~~~~~~~~~d~al~-~Rf~-~i~~~ 455 (849)
.+.+..... .......+.+.|...+++ +++.+|++||..+ .+++++. +||. .|+++
T Consensus 69 ~l~~~~~~~--~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~-----~i~~~l~~~rf~~~i~~~ 131 (132)
T PF00004_consen 69 KLFPKSQPS--SSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPD-----KIDPALLRSRFDRRIEFP 131 (132)
T ss_dssp GTSHHCSTS--SSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGG-----GSCHHHHSTTSEEEEEE-
T ss_pred hcccccccc--cccccccccceeeecccccccccccceeEEeeCChh-----hCCHhHHhCCCcEEEEcC
Confidence 998766211 112334456666666652 4589999999976 8999999 9997 57665
No 143
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.58 E-value=1.8e-14 Score=175.34 Aligned_cols=178 Identities=19% Similarity=0.256 Sum_probs=125.3
Q ss_pred CccccHHHHHHHHHHHhcC------CCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhh------h
Q 003088 291 PVIGRETEIQRIIQILCRR------TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLL------M 358 (849)
Q Consensus 291 ~iiG~~~~i~~l~~~l~~~------~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~------~ 358 (849)
+++|+++.++++.+++..+ ...+++|+||||||||++|++||+.+ +..++.++++.. .
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l----------~~~~~~i~~~~~~~~~~i~ 390 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL----------NRKFVRFSLGGVRDEAEIR 390 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh----------cCCeEEEeCCCcccHHHHc
Confidence 5899999999988866322 34578999999999999999999998 444555543321 1
Q ss_pred -ccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcC----------------
Q 003088 359 -AGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR---------------- 421 (849)
Q Consensus 359 -~~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~---------------- 421 (849)
....+.|....++...+..+....+ |+||||||.+.+.. ..+..+.|+..++.
T Consensus 391 g~~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~---------~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d 460 (775)
T TIGR00763 391 GHRRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSF---------RGDPASALLEVLDPEQNNAFSDHYLDVPFD 460 (775)
T ss_pred CCCCceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCcc---------CCCHHHHHHHhcCHHhcCccccccCCceec
Confidence 0123445555556666665544444 89999999996321 11223445544431
Q ss_pred -CCeEEEEccChHHHHHHhhccHHHHhccccEEecCCCHHHHHHHHHHHHH-HHHhhc-----CCccCHHHHHHHHHhh
Q 003088 422 -GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLRE-KYEAHH-----NCKFTLEAINAAVHLS 493 (849)
Q Consensus 422 -~~i~vI~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL~~~~~-~~~~~~-----~~~i~~~~l~~~a~ls 493 (849)
+++.+|+|||... .++++|++||..|.|+.|+.+++.+|++..+. +....+ ++.++++++..++...
T Consensus 461 ~s~v~~I~TtN~~~-----~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~ 534 (775)
T TIGR00763 461 LSKVIFIATANSID-----TIPRPLLDRMEVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYY 534 (775)
T ss_pred cCCEEEEEecCCch-----hCCHHHhCCeeEEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhc
Confidence 4678899999865 78999999999999999999999999987542 222222 4689999998887743
No 144
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.58 E-value=5.9e-15 Score=151.85 Aligned_cols=163 Identities=23% Similarity=0.313 Sum_probs=114.4
Q ss_pred cCCHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCC-Cc
Q 003088 611 QITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSE-SS 689 (849)
Q Consensus 611 ~~~~~~~~~~~~l~~~l~~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~-~~ 689 (849)
..+|.+++++..+++ +.||+.++..+.+++.. +-+ .++|||||||||||..|+++++.+++.+ .+
T Consensus 23 ~~swteKYrPkt~de-----~~gQe~vV~~L~~a~~~-~~l--------p~~LFyGPpGTGKTStalafar~L~~~~~~~ 88 (346)
T KOG0989|consen 23 HRSWTEKYRPKTFDE-----LAGQEHVVQVLKNALLR-RIL--------PHYLFYGPPGTGKTSTALAFARALNCEQLFP 88 (346)
T ss_pred ccchHHHhCCCcHHh-----hcchHHHHHHHHHHHhh-cCC--------ceEEeeCCCCCcHhHHHHHHHHHhcCccccc
Confidence 467888888877754 89999999999999986 221 2599999999999999999999998722 11
Q ss_pred --eeEeeccccccccccccccCCCCCccccccCcchhH---HH------HhCCCeEEEEeCccccCHHHHHHHHHHhhcC
Q 003088 690 --MLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTE---AI------RRRPFTLLLLDEIEKAHPDIFNILLQVFEDG 758 (849)
Q Consensus 690 --~i~i~~~~~~~~~~~~~l~g~~~g~vg~~~~~~l~~---~i------~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g 758 (849)
+...+.+.......+ ... ...+.. .. ...++.|++|||+|.|..++|++|.+.||+
T Consensus 89 ~rvl~lnaSderGisvv-----------r~K-ik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~- 155 (346)
T KOG0989|consen 89 CRVLELNASDERGISVV-----------REK-IKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMED- 155 (346)
T ss_pred cchhhhcccccccccch-----------hhh-hcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhc-
Confidence 122233222221100 000 000110 00 012357999999999999999999999998
Q ss_pred eeecCCCceeecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCC
Q 003088 759 HLTDSHGRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSL 838 (849)
Q Consensus 759 ~~~~~~g~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl 838 (849)
...+++||+.||.-.. +.+.+.+|| ..+.|.|+
T Consensus 156 ----------~s~~trFiLIcnylsr------------------------------------ii~pi~SRC-~KfrFk~L 188 (346)
T KOG0989|consen 156 ----------FSRTTRFILICNYLSR------------------------------------IIRPLVSRC-QKFRFKKL 188 (346)
T ss_pred ----------cccceEEEEEcCChhh------------------------------------CChHHHhhH-HHhcCCCc
Confidence 2358999999997432 567788999 78889999
Q ss_pred CHHHHcccc
Q 003088 839 EKAQVCQLP 847 (849)
Q Consensus 839 ~~~~~~~I~ 847 (849)
..+++.+.+
T Consensus 189 ~d~~iv~rL 197 (346)
T KOG0989|consen 189 KDEDIVDRL 197 (346)
T ss_pred chHHHHHHH
Confidence 987665543
No 145
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.58 E-value=4.5e-15 Score=158.18 Aligned_cols=143 Identities=26% Similarity=0.423 Sum_probs=103.0
Q ss_pred ccccccHHHH---HHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccc
Q 003088 629 KRVIGQDEAV---AAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVS 705 (849)
Q Consensus 629 ~~i~Gq~~~i---~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~ 705 (849)
++++||++.+ ..|.+.+... ...+++||||||||||++|+.||... +.+|..++.....-
T Consensus 24 de~vGQ~HLlg~~~~lrr~v~~~---------~l~SmIl~GPPG~GKTTlA~liA~~~---~~~f~~~sAv~~gv----- 86 (436)
T COG2256 24 DEVVGQEHLLGEGKPLRRAVEAG---------HLHSMILWGPPGTGKTTLARLIAGTT---NAAFEALSAVTSGV----- 86 (436)
T ss_pred HHhcChHhhhCCCchHHHHHhcC---------CCceeEEECCCCCCHHHHHHHHHHhh---CCceEEeccccccH-----
Confidence 4588998877 3455555432 23469999999999999999999985 56688777643211
Q ss_pred cccCCCCCcccccc-CcchhHHHHh---CCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCC
Q 003088 706 KLIGSPPGYVGYEE-GGLLTEAIRR---RPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNV 781 (849)
Q Consensus 706 ~l~g~~~g~vg~~~-~~~l~~~i~~---~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~ 781 (849)
.+ ...+.++-+. ....|||||||++++...|+.||..+|+|. +++|.+|.-
T Consensus 87 ------------kdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE~G~-------------iilIGATTE 141 (436)
T COG2256 87 ------------KDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVENGT-------------IILIGATTE 141 (436)
T ss_pred ------------HHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhhhhhhhhhcCCe-------------EEEEeccCC
Confidence 11 1122222111 124799999999999999999999999975 567776653
Q ss_pred CchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHHHccccC
Q 003088 782 GSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQLPL 848 (849)
Q Consensus 782 ~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~I~~ 848 (849)
.+. |. +.|+|++|+ .++.|.||+.+++.++++
T Consensus 142 NPs-----------F~-----------------------ln~ALlSR~-~vf~lk~L~~~di~~~l~ 173 (436)
T COG2256 142 NPS-----------FE-----------------------LNPALLSRA-RVFELKPLSSEDIKKLLK 173 (436)
T ss_pred CCC-----------ee-----------------------ecHHHhhhh-heeeeecCCHHHHHHHHH
Confidence 221 11 679999999 899999999999988753
No 146
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=9.3e-15 Score=145.34 Aligned_cols=156 Identities=25% Similarity=0.443 Sum_probs=108.9
Q ss_pred cccccHHHHHHHHHHHH--------HhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccc
Q 003088 630 RVIGQDEAVAAISRAVK--------RSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMER 701 (849)
Q Consensus 630 ~i~Gq~~~i~~l~~~l~--------~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~ 701 (849)
.+-|.+-.++.++.+++ +...|+.+|. .+|+|||||||||++|+++|+. ....||++.++++..+
T Consensus 156 diggld~qkqeireavelplt~~~ly~qigidppr----gvllygppg~gktml~kava~~---t~a~firvvgsefvqk 228 (408)
T KOG0727|consen 156 DIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPR----GVLLYGPPGTGKTMLAKAVANH---TTAAFIRVVGSEFVQK 228 (408)
T ss_pred ccccchhhHHHHHHHHhccchHHHHHHHhCCCCCc----ceEEeCCCCCcHHHHHHHHhhc---cchheeeeccHHHHHH
Confidence 34555555555555542 2344666554 3999999999999999999987 3667999999998653
Q ss_pred cccccccCCCCCccccccC--cchhHHHHhCCCeEEEEeCcccc-----------CHHHHHHHHHHhhcCeeecCCCcee
Q 003088 702 HTVSKLIGSPPGYVGYEEG--GLLTEAIRRRPFTLLLLDEIEKA-----------HPDIFNILLQVFEDGHLTDSHGRRV 768 (849)
Q Consensus 702 ~~~~~l~g~~~g~vg~~~~--~~l~~~i~~~~~~vl~lDEid~l-----------~~~~~~~Ll~~le~g~~~~~~g~~~ 768 (849)
|.|++.. ..++...+++..+|+||||||.. +.++|..|+.++..-.-.|
T Consensus 229 ------------ylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfd------ 290 (408)
T KOG0727|consen 229 ------------YLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFD------ 290 (408)
T ss_pred ------------HhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcC------
Confidence 4444332 23445556677799999999966 5568888887775411111
Q ss_pred ecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHh--hccccEEEcCCCCHHHHccc
Q 003088 769 SFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELL--NRIDEVVVFRSLEKAQVCQL 846 (849)
Q Consensus 769 ~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell--~R~d~~i~f~pl~~~~~~~I 846 (849)
...|+-+|++||... .++|+|+ .|+|..|.|+-.++.+.+-+
T Consensus 291 q~~nvkvimatnrad------------------------------------tldpallrpgrldrkiefplpdrrqkrlv 334 (408)
T KOG0727|consen 291 QTTNVKVIMATNRAD------------------------------------TLDPALLRPGRLDRKIEFPLPDRRQKRLV 334 (408)
T ss_pred cccceEEEEecCccc------------------------------------ccCHhhcCCccccccccCCCCchhhhhhh
Confidence 124899999999732 1788888 89999999997776665433
No 147
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.57 E-value=1e-14 Score=148.52 Aligned_cols=161 Identities=19% Similarity=0.284 Sum_probs=119.1
Q ss_pred HHhccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccc
Q 003088 626 QLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVS 705 (849)
Q Consensus 626 ~l~~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~ 705 (849)
...++++||+++++++.-.++.++.. +.++.|+||+||||.|||++|..+|+.+ +.++-....+.+..
T Consensus 23 ~~l~efiGQ~~vk~~L~ifI~AAk~r----~e~lDHvLl~GPPGlGKTTLA~IIA~Em---gvn~k~tsGp~leK----- 90 (332)
T COG2255 23 KTLDEFIGQEKVKEQLQIFIKAAKKR----GEALDHVLLFGPPGLGKTTLAHIIANEL---GVNLKITSGPALEK----- 90 (332)
T ss_pred ccHHHhcChHHHHHHHHHHHHHHHhc----CCCcCeEEeeCCCCCcHHHHHHHHHHHh---cCCeEecccccccC-----
Confidence 33467999999999999999877543 3456789999999999999999999997 33333333322211
Q ss_pred cccCCCCCccccccCcchhHHHH-hCCCeEEEEeCccccCHHHHHHHHHHhhcCeeec--CCC---c--eeecCCeEEEE
Q 003088 706 KLIGSPPGYVGYEEGGLLTEAIR-RRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTD--SHG---R--RVSFKNALIVM 777 (849)
Q Consensus 706 ~l~g~~~g~vg~~~~~~l~~~i~-~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~--~~g---~--~~~~~~~~iI~ 777 (849)
.+.+...+. -.++.|||||||+.+++.+.+.|+.+||+.++.. +.| + .++.+.+.+|.
T Consensus 91 --------------~gDlaaiLt~Le~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIG 156 (332)
T COG2255 91 --------------PGDLAAILTNLEEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIG 156 (332)
T ss_pred --------------hhhHHHHHhcCCcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEee
Confidence 123333333 2456799999999999999999999999988653 222 2 34567888888
Q ss_pred ecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHHHccccC
Q 003088 778 TSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQLPL 848 (849)
Q Consensus 778 tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~I~~ 848 (849)
+|... | .+..+|.+||..+..+.-|+.+++.+|+.
T Consensus 157 ATTr~------------G------------------------~lt~PLrdRFGi~~rlefY~~~eL~~Iv~ 191 (332)
T COG2255 157 ATTRA------------G------------------------MLTNPLRDRFGIIQRLEFYTVEELEEIVK 191 (332)
T ss_pred ecccc------------c------------------------cccchhHHhcCCeeeeecCCHHHHHHHHH
Confidence 66541 1 16778999999999999999999998863
No 148
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.57 E-value=1.5e-14 Score=168.06 Aligned_cols=175 Identities=26% Similarity=0.371 Sum_probs=120.5
Q ss_pred ccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHh-------cCCCCceeEeeccc--cc
Q 003088 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACY-------FGSESSMLRLDMSE--YM 699 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l-------~~~~~~~i~i~~~~--~~ 699 (849)
++++||+.+++.+..++.. . . ..++||+||||||||++|+++++.. +..+.+|+.+||.. +.
T Consensus 65 ~~iiGqs~~i~~l~~al~~----~----~-~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~ 135 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCG----P----N-PQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFD 135 (531)
T ss_pred HHeeCcHHHHHHHHHHHhC----C----C-CceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCC
Confidence 4599999999998765421 1 1 1359999999999999999998753 12246899999874 22
Q ss_pred cccccccccCCC--CCcccccc------CcchhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhhcCeeecC------CC
Q 003088 700 ERHTVSKLIGSP--PGYVGYEE------GGLLTEAIRRRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDS------HG 765 (849)
Q Consensus 700 ~~~~~~~l~g~~--~g~vg~~~------~~~l~~~i~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~------~g 765 (849)
+......++|.. +.|.|... .....+.+.++.+++||||||+.|++..|+.|+++|+++.+... .+
T Consensus 136 ~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~~q~~LL~~Le~~~~~~~~~~~~~~~ 215 (531)
T TIGR02902 136 ERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPVQMNKLLKVLEDRKVFLDSAYYNSEN 215 (531)
T ss_pred ccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHHHHHHHHHHHHhCeeeeccccccccC
Confidence 222233445432 11222110 11233466778889999999999999999999999999875432 11
Q ss_pred c-----------eeecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEE
Q 003088 766 R-----------RVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVV 834 (849)
Q Consensus 766 ~-----------~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~ 834 (849)
. .....++++|++|+..+.. +.|++.+|+ ..+.
T Consensus 216 ~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~-----------------------------------L~paLrsR~-~~I~ 259 (531)
T TIGR02902 216 PNIPSHIHDIFQNGLPADFRLIGATTRNPEE-----------------------------------IPPALRSRC-VEIF 259 (531)
T ss_pred cccccchhhhcccCcccceEEEEEecCCccc-----------------------------------CChHHhhhh-heee
Confidence 1 0112478888887764421 678999999 6788
Q ss_pred cCCCCHHHHccccC
Q 003088 835 FRSLEKAQVCQLPL 848 (849)
Q Consensus 835 f~pl~~~~~~~I~~ 848 (849)
|+||+.+++.+|++
T Consensus 260 f~pL~~eei~~Il~ 273 (531)
T TIGR02902 260 FRPLLDEEIKEIAK 273 (531)
T ss_pred CCCCCHHHHHHHHH
Confidence 99999999888764
No 149
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.56 E-value=3.1e-14 Score=158.74 Aligned_cols=178 Identities=19% Similarity=0.228 Sum_probs=122.9
Q ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeecc
Q 003088 617 RMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMS 696 (849)
Q Consensus 617 ~~~~~~l~~~l~~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~ 696 (849)
...+..+...+.+.++|++++++.+..++... +|+||+||||||||++|++||..+.+.+ +|..+.+.
T Consensus 8 ~~~i~~l~~~l~~~i~gre~vI~lll~aalag-----------~hVLL~GpPGTGKT~LAraLa~~~~~~~-~F~~~~~~ 75 (498)
T PRK13531 8 AERISRLSSALEKGLYERSHAIRLCLLAALSG-----------ESVFLLGPPGIAKSLIARRLKFAFQNAR-AFEYLMTR 75 (498)
T ss_pred HHHHHHHHHHHhhhccCcHHHHHHHHHHHccC-----------CCEEEECCCChhHHHHHHHHHHHhcccC-cceeeeee
Confidence 45567788899999999999999987777532 3599999999999999999999874433 56655554
Q ss_pred ccccccccccccCCCCCccccccCcchhH----HHHhCCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCC
Q 003088 697 EYMERHTVSKLIGSPPGYVGYEEGGLLTE----AIRRRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKN 772 (849)
Q Consensus 697 ~~~~~~~~~~l~g~~~g~vg~~~~~~l~~----~i~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~ 772 (849)
-. ....++|.-.-+.... .+.+.. .+..+ .+||+|||.++++.+|+.||++|+++.++. +|+....+.
T Consensus 76 ft----tp~DLfG~l~i~~~~~-~g~f~r~~~G~L~~A--~lLfLDEI~rasp~~QsaLLeam~Er~~t~-g~~~~~lp~ 147 (498)
T PRK13531 76 FS----TPEEVFGPLSIQALKD-EGRYQRLTSGYLPEA--EIVFLDEIWKAGPAILNTLLTAINERRFRN-GAHEEKIPM 147 (498)
T ss_pred ec----CcHHhcCcHHHhhhhh-cCchhhhcCCccccc--cEEeecccccCCHHHHHHHHHHHHhCeEec-CCeEEeCCC
Confidence 21 1345666421110000 111111 11112 299999999999999999999999999987 566666666
Q ss_pred eEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCC-HHHHcccc
Q 003088 773 ALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLE-KAQVCQLP 847 (849)
Q Consensus 773 ~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~-~~~~~~I~ 847 (849)
-+|+++||.-++ .+. |.+++++||-..+..+|++ +++..+|+
T Consensus 148 rfiv~ATN~LPE----~g~-----------------------------~leAL~DRFliri~vp~l~~~~~e~~lL 190 (498)
T PRK13531 148 RLLVTASNELPE----ADS-----------------------------SLEALYDRMLIRLWLDKVQDKANFRSML 190 (498)
T ss_pred cEEEEECCCCcc----cCC-----------------------------chHHhHhhEEEEEECCCCCchHHHHHHH
Confidence 666677775322 211 7889999997788888887 45544443
No 150
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=1e-14 Score=158.70 Aligned_cols=157 Identities=25% Similarity=0.317 Sum_probs=113.4
Q ss_pred hccccccHHHHHHHHHHHH-------HhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeecccccc
Q 003088 628 KKRVIGQDEAVAAISRAVK-------RSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYME 700 (849)
Q Consensus 628 ~~~i~Gq~~~i~~l~~~l~-------~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~ 700 (849)
++.+.|.++++..+...+. ..+.|.+-|.. +||+||||||||++||++|-. .+.||.....+++.+
T Consensus 303 F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKG----VLLvGPPGTGKTlLARAvAGE---A~VPFF~~sGSEFdE 375 (752)
T KOG0734|consen 303 FEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKG----VLLVGPPGTGKTLLARAVAGE---AGVPFFYASGSEFDE 375 (752)
T ss_pred cccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCc----eEEeCCCCCchhHHHHHhhcc---cCCCeEeccccchhh
Confidence 3567777777766665553 34556555443 999999999999999999976 578999999999876
Q ss_pred ccccccccCCCCCcccccc--CcchhHHHHhCCCeEEEEeCccccC-----------HHHHHHHHHHhhcCeeecCCCce
Q 003088 701 RHTVSKLIGSPPGYVGYEE--GGLLTEAIRRRPFTLLLLDEIEKAH-----------PDIFNILLQVFEDGHLTDSHGRR 767 (849)
Q Consensus 701 ~~~~~~l~g~~~g~vg~~~--~~~l~~~i~~~~~~vl~lDEid~l~-----------~~~~~~Ll~~le~g~~~~~~g~~ 767 (849)
- |||... ...|+.+.+.+.+|||||||||... ....|+||-.||...-
T Consensus 376 m------------~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~q------- 436 (752)
T KOG0734|consen 376 M------------FVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQ------- 436 (752)
T ss_pred h------------hhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCc-------
Confidence 2 555543 2346666666777999999999772 2468889988887331
Q ss_pred eecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHh--hccccEEEcCCCCHHHHcc
Q 003088 768 VSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELL--NRIDEVVVFRSLEKAQVCQ 845 (849)
Q Consensus 768 ~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell--~R~d~~i~f~pl~~~~~~~ 845 (849)
..-+|||.+||.+-. ++++|. .|||..|..+-++-.-..+
T Consensus 437 --NeGiIvigATNfpe~------------------------------------LD~AL~RPGRFD~~v~Vp~PDv~GR~e 478 (752)
T KOG0734|consen 437 --NEGIIVIGATNFPEA------------------------------------LDKALTRPGRFDRHVTVPLPDVRGRTE 478 (752)
T ss_pred --CCceEEEeccCChhh------------------------------------hhHHhcCCCccceeEecCCCCcccHHH
Confidence 125788899997421 566666 8999988888888665555
Q ss_pred ccC
Q 003088 846 LPL 848 (849)
Q Consensus 846 I~~ 848 (849)
|++
T Consensus 479 IL~ 481 (752)
T KOG0734|consen 479 ILK 481 (752)
T ss_pred HHH
Confidence 543
No 151
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=4.1e-15 Score=162.64 Aligned_cols=210 Identities=26% Similarity=0.344 Sum_probs=138.9
Q ss_pred CCccCHhHHHHHHHhHhCC---CcccCCHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceee
Q 003088 589 PAVVGPDDIAAVASLWSGI---PVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFC 665 (849)
Q Consensus 589 ~~~v~~~~i~~~~~~~~g~---~~~~~~~~~~~~~~~l~~~l~~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~ 665 (849)
..+....++.++++.+.|. +.......... ...... ..+|+||+.+++.+ .-+..|.+ |+||+
T Consensus 139 ~~v~~~~~l~ev~~~l~g~~~l~~~~~~~~~~~--~~~~~D-~~DV~GQ~~AKrAl----eiAAAGgH-------nLl~~ 204 (490)
T COG0606 139 LPVYGARYLEEVVNFLEGKLRLPIPIPSEVIES--FSLAPD-FKDVKGQEQAKRAL----EIAAAGGH-------NLLLV 204 (490)
T ss_pred CCccchhhHHHHHHHhcCCcCCCCCCccccccc--cccCcc-hhhhcCcHHHHHHH----HHHHhcCC-------cEEEe
Confidence 3556677888888888874 22222211111 000111 26799999998665 45555655 49999
Q ss_pred cCCCCchHHHHHHHHHHhcCCCCceeEeeccccccc--------------------------c--ccccccCCCCCcccc
Q 003088 666 GPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMER--------------------------H--TVSKLIGSPPGYVGY 717 (849)
Q Consensus 666 Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~--------------------------~--~~~~l~g~~~g~vg~ 717 (849)
||||||||++|+.+...+- .+.-.+..+. | +...++|. +
T Consensus 205 GpPGtGKTmla~Rl~~lLP-------pls~~E~lE~s~I~s~~g~~~~~~~~~~~rPFr~PHHsaS~~aLvGG---G--- 271 (490)
T COG0606 205 GPPGTGKTMLASRLPGLLP-------PLSIPEALEVSAIHSLAGDLHEGCPLKIHRPFRAPHHSASLAALVGG---G--- 271 (490)
T ss_pred cCCCCchHHhhhhhcccCC-------CCChHHHHHHHHHhhhcccccccCccceeCCccCCCccchHHHHhCC---C---
Confidence 9999999999998876541 1111111111 1 11122221 1
Q ss_pred ccCcchhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCC-CceeecC-CeEEEEecCCCchhhhcccCCccc
Q 003088 718 EEGGLLTEAIRRRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSH-GRRVSFK-NALIVMTSNVGSTTIAKGRHGSIG 795 (849)
Q Consensus 718 ~~~~~l~~~i~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~-g~~~~~~-~~~iI~tsn~~~~~l~~~~~~~~g 795 (849)
+....+.+..+.+|||||||+-.+...+++.|.+-||+|++.... +.++.++ ++.+|+++|+ |+||
T Consensus 272 --~~p~PGeIsLAH~GVLFLDElpef~~~iLe~LR~PLE~g~i~IsRa~~~v~ypa~Fqlv~AmNp----------cpcG 339 (490)
T COG0606 272 --GVPRPGEISLAHNGVLFLDELPEFKRSILEALREPLENGKIIISRAGSKVTYPARFQLVAAMNP----------CPCG 339 (490)
T ss_pred --CCCCCCceeeecCCEEEeeccchhhHHHHHHHhCccccCcEEEEEcCCeeEEeeeeEEhhhcCC----------CCcc
Confidence 123344566788999999999999999999999999999987753 4455555 9999999999 6788
Q ss_pred cccccCCcccHHhHHHHHHHHHHhh---CChHHhhccccEEEcCCCCHHHH
Q 003088 796 FLLEDNESTSYAGMKTLVVEELKAY---FRPELLNRIDEVVVFRSLEKAQV 843 (849)
Q Consensus 796 f~~~~~~~~~~~~~~~~~~~~l~~~---~~pell~R~d~~i~f~pl~~~~~ 843 (849)
+...... -|.|......+| +.-.|++|||..+..+.++..++
T Consensus 340 ~~~~~~~------~C~c~~~~~~~Y~~klSgp~lDRiDl~vev~~~~~~e~ 384 (490)
T COG0606 340 NLGAPLR------RCPCSPRQIKRYLNKLSGPFLDRIDLMVEVPRLSAGEL 384 (490)
T ss_pred CCCCCCC------CcCCCHHHHHHHHHHhhHHHHhhhhheecccCCCHHHh
Confidence 7654322 244555555444 67899999999999999986554
No 152
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.54 E-value=6.5e-14 Score=149.09 Aligned_cols=147 Identities=27% Similarity=0.334 Sum_probs=103.4
Q ss_pred ceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccccccCCCCCccccc--------------------cCc
Q 003088 662 MLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYE--------------------EGG 721 (849)
Q Consensus 662 lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~vg~~--------------------~~~ 721 (849)
+||+||||||||++|+++|+.+ +.+++.++|..... .+.++|...+|.... ..+
T Consensus 24 vLL~G~~GtGKT~lA~~la~~l---g~~~~~i~~~~~~~---~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 97 (262)
T TIGR02640 24 VHLRGPAGTGKTTLAMHVARKR---DRPVMLINGDAELT---TSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDN 97 (262)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh---CCCEEEEeCCccCC---HHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCc
Confidence 9999999999999999999875 66899999876332 344555422211100 023
Q ss_pred chhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCC----cee-ecCCeEEEEecCCCchhhhcccCCcccc
Q 003088 722 LLTEAIRRRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHG----RRV-SFKNALIVMTSNVGSTTIAKGRHGSIGF 796 (849)
Q Consensus 722 ~l~~~i~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g----~~~-~~~~~~iI~tsn~~~~~l~~~~~~~~gf 796 (849)
.+..+.+ .+++|+||||+++++++|+.|+.+|+++.+...++ ..+ ..++++||+|+|+......
T Consensus 98 ~l~~A~~--~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~--------- 166 (262)
T TIGR02640 98 RLTLAVR--EGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGV--------- 166 (262)
T ss_pred hHHHHHH--cCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccce---------
Confidence 3444443 35699999999999999999999999999876542 222 3468999999997421100
Q ss_pred ccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHHHccccC
Q 003088 797 LLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQLPL 848 (849)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~I~~ 848 (849)
..++++|++|| ..+.+..++.++..+|++
T Consensus 167 ----------------------~~l~~aL~~R~-~~i~i~~P~~~~e~~Il~ 195 (262)
T TIGR02640 167 ----------------------HETQDALLDRL-ITIFMDYPDIDTETAILR 195 (262)
T ss_pred ----------------------ecccHHHHhhc-EEEECCCCCHHHHHHHHH
Confidence 01568899999 667777778777776653
No 153
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.54 E-value=2.1e-14 Score=166.51 Aligned_cols=172 Identities=22% Similarity=0.330 Sum_probs=134.5
Q ss_pred cccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccccccC
Q 003088 630 RVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIG 709 (849)
Q Consensus 630 ~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g 709 (849)
.++|.+..+..+...+...... ..++++.|++||||+++|+++|....+...+|+.+||+.+......+.+||
T Consensus 139 ~lig~s~~~~~l~~~~~~~~~~-------~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~~~~lfg 211 (469)
T PRK10923 139 DIIGEAPAMQDVFRIIGRLSRS-------SISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFG 211 (469)
T ss_pred cceecCHHHHHHHHHHHHHhcc-------CCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHHHHHhcC
Confidence 4788888888877777653211 123999999999999999999999887889999999999977777778899
Q ss_pred CCCC-ccccccCcchhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCchhhhc
Q 003088 710 SPPG-YVGYEEGGLLTEAIRRRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAK 788 (849)
Q Consensus 710 ~~~g-~vg~~~~~~l~~~i~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~~ 788 (849)
...| +.|... ...+.+..+.+|+||||||+.+++..|..|+++|+++.+...++......+++||+||+.+...+.+
T Consensus 212 ~~~g~~~~~~~--~~~g~~~~a~~Gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~ 289 (469)
T PRK10923 212 HEKGAFTGANT--IRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQ 289 (469)
T ss_pred CCCCCCCCCCc--CCCCCeeECCCCEEEEeccccCCHHHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCHHHHHH
Confidence 7654 333322 1122345567899999999999999999999999999988766655445699999999998766555
Q ss_pred ccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccc-cEEEcCCCC
Q 003088 789 GRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRID-EVVVFRSLE 839 (849)
Q Consensus 789 ~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d-~~i~f~pl~ 839 (849)
.+. |+++|++||+ ..|..|||.
T Consensus 290 ~~~-----------------------------~~~~L~~~l~~~~i~~PpLr 312 (469)
T PRK10923 290 EGK-----------------------------FREDLFHRLNVIRVHLPPLR 312 (469)
T ss_pred cCC-----------------------------chHHHHHHhcceeecCCCcc
Confidence 544 8999999996 577777776
No 154
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=2e-14 Score=147.50 Aligned_cols=185 Identities=22% Similarity=0.306 Sum_probs=141.1
Q ss_pred CCCCccccHHHHHHHHHHHhc-------------CCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeeh
Q 003088 288 LIDPVIGRETEIQRIIQILCR-------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM 354 (849)
Q Consensus 288 ~l~~iiG~~~~i~~l~~~l~~-------------~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~ 354 (849)
.++.+-|-..+++.+.+.+.- ..+..++||||||+|||.+|+++|..+ ++.++.+..
T Consensus 130 s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~m----------g~nfl~v~s 199 (388)
T KOG0651|consen 130 SFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATM----------GVNFLKVVS 199 (388)
T ss_pred CHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhc----------CCceEEeeH
Confidence 688899999999998886522 233456999999999999999999998 778888777
Q ss_pred hhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhc-------CCCeEEE
Q 003088 355 GLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG-------RGELQCI 427 (849)
Q Consensus 355 ~~~~~~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le-------~~~i~vI 427 (849)
+.+. .++.|+....+++.+..++...+||||+||||.+.+.. +..+. ....+++..|..++. -+++.+|
T Consensus 200 s~lv--~kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr-~se~T-s~dreiqrTLMeLlnqmdgfd~l~rVk~I 275 (388)
T KOG0651|consen 200 SALV--DKYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRR-FSEGT-SSDREIQRTLMELLNQMDGFDTLHRVKTI 275 (388)
T ss_pred hhhh--hhhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEE-ecccc-chhHHHHHHHHHHHHhhccchhcccccEE
Confidence 7777 56799999999999999999999999999999996643 21111 234556666655553 4789999
Q ss_pred EccChHHHHHHhhccHHHHh--ccc-cEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhcc
Q 003088 428 ASTTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496 (849)
Q Consensus 428 ~at~~~~~~~~~~~d~al~~--Rf~-~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~ 496 (849)
+|||..+ -++|+|.| |++ .+++|.|+...|..|++-..+....+ -.+.+++ +++++++|
T Consensus 276 matNrpd-----tLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~--Geid~ea---ivK~~d~f 337 (388)
T KOG0651|consen 276 MATNRPD-----TLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFH--GEIDDEA---ILKLVDGF 337 (388)
T ss_pred EecCCcc-----ccchhhcCCccccceeccCCcchhhceeeEeecccccccc--ccccHHH---HHHHHhcc
Confidence 9999987 89999999 997 59999999999999886544422111 2444444 44555544
No 155
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=3.8e-14 Score=149.43 Aligned_cols=150 Identities=23% Similarity=0.268 Sum_probs=102.7
Q ss_pred hHHHHHHHhHhCCCcccCCHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHH------hhcCCCCCCCCCccceeecCC
Q 003088 595 DDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKR------SRVGLKDPNRPTAAMLFCGPT 668 (849)
Q Consensus 595 ~~i~~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~i~Gq~~~i~~l~~~l~~------~~~g~~~~~~p~~~lL~~Gp~ 668 (849)
.++.+.++.-.-....++.|+ .|.|.+++++-|..++.. -..|+..|.+. ||++|||
T Consensus 192 ~~Lve~lerdIl~~np~ikW~--------------DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkg---vLm~GPP 254 (491)
T KOG0738|consen 192 ADLVEALERDILQRNPNIKWD--------------DIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKG---VLMVGPP 254 (491)
T ss_pred HHHHHHHHHHHhccCCCcChH--------------hhcchHHHHHHHHHHHhhhhhhHHHHhhcccccce---eeeeCCC
Confidence 356666665332222335554 466777777777777633 24477777664 9999999
Q ss_pred CCchHHHHHHHHHHhcCCCCceeEeeccccccccccccccCCCCCccccccC--cchhHHHHhCCCeEEEEeCcccc---
Q 003088 669 GVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEG--GLLTEAIRRRPFTLLLLDEIEKA--- 743 (849)
Q Consensus 669 GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~vg~~~~--~~l~~~i~~~~~~vl~lDEid~l--- 743 (849)
|||||+||+++|..- +.-|..+..+.+.. .|.|++|. ..|++..+....++|||||||.+
T Consensus 255 GTGKTlLAKAvATEc---~tTFFNVSsstltS------------KwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~ 319 (491)
T KOG0738|consen 255 GTGKTLLAKAVATEC---GTTFFNVSSSTLTS------------KWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQ 319 (491)
T ss_pred CCcHHHHHHHHHHhh---cCeEEEechhhhhh------------hhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhc
Confidence 999999999999883 55677777766654 36677663 45777777777899999999987
Q ss_pred ---------CHHHHHHHHHHhhcCeeecCCCceeecC-CeEEEEecCCC
Q 003088 744 ---------HPDIFNILLQVFEDGHLTDSHGRRVSFK-NALIVMTSNVG 782 (849)
Q Consensus 744 ---------~~~~~~~Ll~~le~g~~~~~~g~~~~~~-~~~iI~tsn~~ 782 (849)
+..+-+.||..||.-. .+.... -+.|+++||.+
T Consensus 320 RG~s~EHEaSRRvKsELLvQmDG~~------~t~e~~k~VmVLAATN~P 362 (491)
T KOG0738|consen 320 RGGSSEHEASRRVKSELLVQMDGVQ------GTLENSKVVMVLAATNFP 362 (491)
T ss_pred CCCccchhHHHHHHHHHHHHhhccc------cccccceeEEEEeccCCC
Confidence 3458899999998622 111112 35666788875
No 156
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=4.1e-14 Score=140.66 Aligned_cols=159 Identities=25% Similarity=0.439 Sum_probs=113.6
Q ss_pred cccccHHHHHHHHHHHHH--------hhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccc
Q 003088 630 RVIGQDEAVAAISRAVKR--------SRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMER 701 (849)
Q Consensus 630 ~i~Gq~~~i~~l~~~l~~--------~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~ 701 (849)
-+-|.+..++.|+..+.. -..|+..| .+ +|+|||||||||.+|+++|..- ...|+++..+++..+
T Consensus 148 MiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQP---KG-vlLygppgtGktLlaraVahht---~c~firvsgselvqk 220 (404)
T KOG0728|consen 148 MIGGLDKQIKEIKEVIELPVKHPELFEALGIAQP---KG-VLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSELVQK 220 (404)
T ss_pred HhccHHHHHHHHHHHHhccccCHHHHHhcCCCCC---cc-eEEecCCCCchhHHHHHHHhhc---ceEEEEechHHHHHH
Confidence 356677777887777643 23355444 33 9999999999999999999874 667999999887653
Q ss_pred cccccccCCCCCccccccC--cchhHHHHhCCCeEEEEeCcccc-----------CHHHHHHHHHHhhcCeeecCCCcee
Q 003088 702 HTVSKLIGSPPGYVGYEEG--GLLTEAIRRRPFTLLLLDEIEKA-----------HPDIFNILLQVFEDGHLTDSHGRRV 768 (849)
Q Consensus 702 ~~~~~l~g~~~g~vg~~~~--~~l~~~i~~~~~~vl~lDEid~l-----------~~~~~~~Ll~~le~g~~~~~~g~~~ 768 (849)
|+|+... ..++-..++..++|+|.||||+. +.++|..+|.++..- +|. -
T Consensus 221 ------------~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnql-----dgf-e 282 (404)
T KOG0728|consen 221 ------------YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQL-----DGF-E 282 (404)
T ss_pred ------------HhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhc-----ccc-c
Confidence 4444331 11222335556699999999987 456888877777531 110 0
Q ss_pred ecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHh--hccccEEEcCCCCHHHHccc
Q 003088 769 SFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELL--NRIDEVVVFRSLEKAQVCQL 846 (849)
Q Consensus 769 ~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell--~R~d~~i~f~pl~~~~~~~I 846 (849)
...|+-+|++||.- ..++|+|+ .|||..|.|||++++...+|
T Consensus 283 atknikvimatnri------------------------------------dild~allrpgridrkiefp~p~e~ar~~i 326 (404)
T KOG0728|consen 283 ATKNIKVIMATNRI------------------------------------DILDPALLRPGRIDRKIEFPPPNEEARLDI 326 (404)
T ss_pred cccceEEEEecccc------------------------------------ccccHhhcCCCcccccccCCCCCHHHHHHH
Confidence 23589999999962 11678888 89999999999999988888
Q ss_pred cCC
Q 003088 847 PLI 849 (849)
Q Consensus 847 ~~l 849 (849)
+++
T Consensus 327 lki 329 (404)
T KOG0728|consen 327 LKI 329 (404)
T ss_pred HHH
Confidence 764
No 157
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.52 E-value=2e-13 Score=149.44 Aligned_cols=112 Identities=26% Similarity=0.329 Sum_probs=83.9
Q ss_pred CCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcC------------CCeEEEEccChHHHHHHhhccHHHHhcc
Q 003088 382 GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR------------GELQCIASTTQDEHRTQFEKDKALARRF 449 (849)
Q Consensus 382 ~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~------------~~i~vI~at~~~~~~~~~~~d~al~~Rf 449 (849)
..+|+||||||.++..++.+ +...++.-+|..|++++|. .++.||+++....-. -..+-|.|.-||
T Consensus 249 ~~GIVfiDEiDKIa~~~~~~-~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~k-p~DlIPEl~GR~ 326 (443)
T PRK05201 249 QNGIVFIDEIDKIAARGGSS-GPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSK-PSDLIPELQGRF 326 (443)
T ss_pred cCCEEEEEcchhhcccCCCC-CCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCC-hhhccHHHhCcc
Confidence 35699999999998664321 2223455689999999985 568899988754321 135679999999
Q ss_pred c-cEEecCCCHHHHHHHHHH----HHHHHHhh-----cCCccCHHHHHHHHHhhhc
Q 003088 450 Q-PVLISEPSQEDAVRILLG----LREKYEAH-----HNCKFTLEAINAAVHLSAR 495 (849)
Q Consensus 450 ~-~i~~~~ps~~e~~~iL~~----~~~~~~~~-----~~~~i~~~~l~~~a~ls~~ 495 (849)
. .+.+.+++.++.+.||.. +.++|... ..+.|+++++..+|+.+..
T Consensus 327 Pi~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~ 382 (443)
T PRK05201 327 PIRVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQ 382 (443)
T ss_pred ceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHH
Confidence 8 699999999999999954 66666532 3457899999999998875
No 158
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.52 E-value=1.2e-13 Score=154.05 Aligned_cols=175 Identities=15% Similarity=0.149 Sum_probs=122.2
Q ss_pred CCCCccccHHHHHHHHHHHhcCC---------C-CCCeEeCCCCChHHHHHHHHHHHhhhCCCCc-ccc-----------
Q 003088 288 LIDPVIGRETEIQRIIQILCRRT---------K-NNPILLGESGVGKTAIAEGLAIRIVQAEVPV-FLL----------- 345 (849)
Q Consensus 288 ~l~~iiG~~~~i~~l~~~l~~~~---------~-~niLL~GppGtGKT~la~~la~~l~~~~~p~-~~~----------- 345 (849)
.|++|+|++..++.|..++..+. . ..+||+||+|+|||++|+.+|+.+.+..... ...
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~ 82 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAG 82 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcC
Confidence 36789999999999999987754 3 4478999999999999999999987643110 000
Q ss_pred -CCeEEEeehhhhhccccccchHHHHHHHHHHHHHh----cCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhc
Q 003088 346 -SKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG 420 (849)
Q Consensus 346 -~~~~~~l~~~~~~~~~~~~g~~e~~l~~l~~~~~~----~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le 420 (849)
+..+..+.... ... ..+.++.+++.+.. ++..|+||||+|.| ...++|.|++.||
T Consensus 83 ~hpD~~~i~~~~-----~~i--~i~~iR~l~~~~~~~p~~~~~kViiIDead~m-------------~~~aanaLLk~LE 142 (394)
T PRK07940 83 THPDVRVVAPEG-----LSI--GVDEVRELVTIAARRPSTGRWRIVVIEDADRL-------------TERAANALLKAVE 142 (394)
T ss_pred CCCCEEEecccc-----ccC--CHHHHHHHHHHHHhCcccCCcEEEEEechhhc-------------CHHHHHHHHHHhh
Confidence 01111221110 001 12235666666543 34579999999999 4556788989998
Q ss_pred C---CCeEEEEccChHHHHHHhhccHHHHhccccEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhccc
Q 003088 421 R---GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497 (849)
Q Consensus 421 ~---~~i~vI~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~ 497 (849)
. +.+++++|++ .+ .+.++++|||+.+.|++|+.++..++|.. .. .++++....++.++++..
T Consensus 143 ep~~~~~fIL~a~~-~~-----~llpTIrSRc~~i~f~~~~~~~i~~~L~~-------~~--~~~~~~a~~la~~s~G~~ 207 (394)
T PRK07940 143 EPPPRTVWLLCAPS-PE-----DVLPTIRSRCRHVALRTPSVEAVAEVLVR-------RD--GVDPETARRAARASQGHI 207 (394)
T ss_pred cCCCCCeEEEEECC-hH-----HChHHHHhhCeEEECCCCCHHHHHHHHHH-------hc--CCCHHHHHHHHHHcCCCH
Confidence 6 4455555555 43 78899999999999999999998877752 11 356787888888888754
No 159
>PRK06893 DNA replication initiation factor; Validated
Probab=99.52 E-value=2.9e-13 Score=141.22 Aligned_cols=179 Identities=12% Similarity=0.165 Sum_probs=114.0
Q ss_pred cCCCCccccHHHH--HHHHHHHhcCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhcccccc
Q 003088 287 ELIDPVIGRETEI--QRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKER 364 (849)
Q Consensus 287 ~~l~~iiG~~~~i--~~l~~~l~~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~~~~~~ 364 (849)
.+|++++|.++.. ..+.+.......+.++|+||||||||++++++|+++... +..+..+++....
T Consensus 13 ~~fd~f~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~-------~~~~~y~~~~~~~------ 79 (229)
T PRK06893 13 ETLDNFYADNNLLLLDSLRKNFIDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLN-------QRTAIYIPLSKSQ------ 79 (229)
T ss_pred ccccccccCChHHHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc-------CCCeEEeeHHHhh------
Confidence 3577777554322 112222222233446899999999999999999998653 2233333333211
Q ss_pred chHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCCCeE-EEEccChHHHHHHhhccH
Q 003088 365 GELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQ-CIASTTQDEHRTQFEKDK 443 (849)
Q Consensus 365 g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~~i~-vI~at~~~~~~~~~~~d~ 443 (849)
.....+++.+.+ ..+|+|||++.+.+.. .....+.+++....+++..+ ++++++.+.. +-...+
T Consensus 80 ----~~~~~~~~~~~~--~dlLilDDi~~~~~~~-------~~~~~l~~l~n~~~~~~~~illits~~~p~~--l~~~~~ 144 (229)
T PRK06893 80 ----YFSPAVLENLEQ--QDLVCLDDLQAVIGNE-------EWELAIFDLFNRIKEQGKTLLLISADCSPHA--LSIKLP 144 (229)
T ss_pred ----hhhHHHHhhccc--CCEEEEeChhhhcCCh-------HHHHHHHHHHHHHHHcCCcEEEEeCCCChHH--ccccch
Confidence 111233333332 3599999999994321 11334556666666666544 4555554431 112448
Q ss_pred HHHhccc---cEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhccc
Q 003088 444 ALARRFQ---PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497 (849)
Q Consensus 444 al~~Rf~---~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~ 497 (849)
.|.+|+. .+.+++|+.+++.+||+..+. ..++.++++++.+++..+.+-.
T Consensus 145 ~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~----~~~l~l~~~v~~~L~~~~~~d~ 197 (229)
T PRK06893 145 DLASRLTWGEIYQLNDLTDEQKIIVLQRNAY----QRGIELSDEVANFLLKRLDRDM 197 (229)
T ss_pred hHHHHHhcCCeeeCCCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHhccCCH
Confidence 9999996 689999999999999988776 5689999999999998887654
No 160
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=4.3e-13 Score=150.98 Aligned_cols=203 Identities=22% Similarity=0.384 Sum_probs=155.0
Q ss_pred HHHHHHhHhCCCcccCCHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHH
Q 003088 597 IAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELA 676 (849)
Q Consensus 597 i~~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA 676 (849)
....++.++.+|+.+.+.+ ...+...+..|.+.-.|.+++++.|...+.-.+..... ..++ ++|+||||+|||.+|
T Consensus 380 trNYLdwlt~LPWgk~S~E-n~dl~~Ak~iLdeDHYgm~dVKeRILEfiAV~kLrgs~-qGkI--lCf~GPPGVGKTSI~ 455 (906)
T KOG2004|consen 380 TRNYLDWLTSLPWGKSSTE-NLDLARAKEILDEDHYGMEDVKERILEFIAVGKLRGSV-QGKI--LCFVGPPGVGKTSIA 455 (906)
T ss_pred HHHHHHHHHhCCCCCCChh-hhhHHHHHHhhcccccchHHHHHHHHHHHHHHhhcccC-CCcE--EEEeCCCCCCcccHH
Confidence 4566777788898887766 66677788889999999999999999888654432221 3333 899999999999999
Q ss_pred HHHHHHhcCCCCceeEeeccccccccccccccCCCCCccccccCcchhHHHHhC--CCeEEEEeCccccCH----HHHHH
Q 003088 677 KSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRRR--PFTLLLLDEIEKAHP----DIFNI 750 (849)
Q Consensus 677 ~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~i~~~--~~~vl~lDEid~l~~----~~~~~ 750 (849)
+.||+.+ +..|.++....+.+ ++.+-|...-|||...+.. .+.+++. .+-+++|||||++-. +=..+
T Consensus 456 kSIA~AL---nRkFfRfSvGG~tD---vAeIkGHRRTYVGAMPGki-Iq~LK~v~t~NPliLiDEvDKlG~g~qGDPasA 528 (906)
T KOG2004|consen 456 KSIARAL---NRKFFRFSVGGMTD---VAEIKGHRRTYVGAMPGKI-IQCLKKVKTENPLILIDEVDKLGSGHQGDPASA 528 (906)
T ss_pred HHHHHHh---CCceEEEecccccc---HHhhcccceeeeccCChHH-HHHHHhhCCCCceEEeehhhhhCCCCCCChHHH
Confidence 9999998 45688888877765 5667788888999887654 4444443 256999999999954 24578
Q ss_pred HHHHhhc---CeeecCC-CceeecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHh
Q 003088 751 LLQVFED---GHLTDSH-GRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELL 826 (849)
Q Consensus 751 Ll~~le~---g~~~~~~-g~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell 826 (849)
||.+||. ..|.|.. .-.++.+.+.||+|.|.-. .++|+|+
T Consensus 529 LLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~id------------------------------------tIP~pLl 572 (906)
T KOG2004|consen 529 LLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVID------------------------------------TIPPPLL 572 (906)
T ss_pred HHHhcChhhccchhhhccccccchhheEEEEeccccc------------------------------------cCChhhh
Confidence 9999974 3355543 3456788999999999621 1789999
Q ss_pred hccccEEEcCCCCHHHHcccc
Q 003088 827 NRIDEVVVFRSLEKAQVCQLP 847 (849)
Q Consensus 827 ~R~d~~i~f~pl~~~~~~~I~ 847 (849)
+|+ ++|...-|..++-.+|.
T Consensus 573 DRM-EvIelsGYv~eEKv~IA 592 (906)
T KOG2004|consen 573 DRM-EVIELSGYVAEEKVKIA 592 (906)
T ss_pred hhh-heeeccCccHHHHHHHH
Confidence 999 89999999988877764
No 161
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=99.52 E-value=8.1e-13 Score=156.62 Aligned_cols=135 Identities=16% Similarity=0.257 Sum_probs=95.8
Q ss_pred CCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehh------hhhcc--ccccchHHHHHHHHHHHHHh
Q 003088 309 RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMG------LLMAG--AKERGELEARVTTLISEIQK 380 (849)
Q Consensus 309 ~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~------~~~~~--~~~~g~~e~~l~~l~~~~~~ 380 (849)
.+.-++|+.||+.+|||+++..+|+.. +.+++.++-. ..+.. +.+.|.+.-+-..+++.+++
T Consensus 886 ~~~fP~LiQGpTSSGKTSMI~yla~~t----------ghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~ 955 (4600)
T COG5271 886 LSNFPLLIQGPTSSGKTSMILYLARET----------GHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRR 955 (4600)
T ss_pred hcCCcEEEecCCCCCcchHHHHHHHHh----------CccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhc
Confidence 455678999999999999999999998 5555555422 11111 12234444444556666664
Q ss_pred cCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCC----------------CeEEEEccChH-HHHHHhhccH
Q 003088 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG----------------ELQCIASTTQD-EHRTQFEKDK 443 (849)
Q Consensus 381 ~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~----------------~i~vI~at~~~-~~~~~~~~d~ 443 (849)
+ .++++||+..- ..++.+.|.++|+.+ ++.+.+|.|++ -|.....+..
T Consensus 956 G--yWIVLDELNLA-------------pTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSr 1020 (4600)
T COG5271 956 G--YWIVLDELNLA-------------PTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSR 1020 (4600)
T ss_pred C--cEEEeeccccC-------------cHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHH
Confidence 4 59999999866 457788888877643 34555666643 4655567889
Q ss_pred HHHhccccEEecCCCHHHHHHHHHH
Q 003088 444 ALARRFQPVLISEPSQEDAVRILLG 468 (849)
Q Consensus 444 al~~Rf~~i~~~~ps~~e~~~iL~~ 468 (849)
||+.||-.+.|..-.++|...||++
T Consensus 1021 AFRNRFlE~hFddipedEle~ILh~ 1045 (4600)
T COG5271 1021 AFRNRFLEMHFDDIPEDELEEILHG 1045 (4600)
T ss_pred HHHhhhHhhhcccCcHHHHHHHHhc
Confidence 9999999999999999999999955
No 162
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.52 E-value=2.4e-13 Score=148.71 Aligned_cols=112 Identities=25% Similarity=0.325 Sum_probs=82.8
Q ss_pred CCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcC------------CCeEEEEccChHHHHHHhhccHHHHhcc
Q 003088 382 GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR------------GELQCIASTTQDEHRTQFEKDKALARRF 449 (849)
Q Consensus 382 ~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~------------~~i~vI~at~~~~~~~~~~~d~al~~Rf 449 (849)
..+|+||||||.++..+... +...++.-+|+.|++++|. .++.||+++......+ -.+-|.|.-||
T Consensus 247 ~~GIVfiDEiDKIa~~~~~~-~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp-~DlIPEl~GR~ 324 (441)
T TIGR00390 247 QSGIIFIDEIDKIAKKGESS-GADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKP-SDLIPELQGRF 324 (441)
T ss_pred cCCEEEEEchhhhcccCCCC-CCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCCh-hhccHHHhCcc
Confidence 45699999999998654221 1123455689999999985 5688999887543221 24679999999
Q ss_pred c-cEEecCCCHHHHHHHHH----HHHHHHHh---hc--CCccCHHHHHHHHHhhhc
Q 003088 450 Q-PVLISEPSQEDAVRILL----GLREKYEA---HH--NCKFTLEAINAAVHLSAR 495 (849)
Q Consensus 450 ~-~i~~~~ps~~e~~~iL~----~~~~~~~~---~~--~~~i~~~~l~~~a~ls~~ 495 (849)
. .+.+.+++.++.+.||. .+.++|.. .. .+.|+++++..+|+.+..
T Consensus 325 Pi~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~ 380 (441)
T TIGR00390 325 PIRVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYN 380 (441)
T ss_pred ceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHH
Confidence 8 69999999999999994 46666652 23 357899999999998764
No 163
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.51 E-value=1e-13 Score=159.80 Aligned_cols=173 Identities=21% Similarity=0.264 Sum_probs=134.6
Q ss_pred ccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeecccccccccccccc
Q 003088 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLI 708 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~ 708 (849)
..++|.+..++.+...+...... ..+++++|++||||+.+|+.++........+|+.++|..+.+....+.+|
T Consensus 139 ~~lig~s~~~~~l~~~i~~~a~~-------~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~~~lf 211 (445)
T TIGR02915 139 RGLITSSPGMQKICRTIEKIAPS-------DITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELF 211 (445)
T ss_pred cceeecCHHHHHHHHHHHHHhCC-------CCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHHHHHhc
Confidence 35899999998888877654211 12499999999999999999999887778899999999987766667888
Q ss_pred CCCCCc-cccccCcchhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCchhhh
Q 003088 709 GSPPGY-VGYEEGGLLTEAIRRRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIA 787 (849)
Q Consensus 709 g~~~g~-vg~~~~~~l~~~i~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~ 787 (849)
|...|. .|.. ....+.+..+.+|+||||||+.+++.+|..|+++|+++.+...++......+++||+||+.+...+.
T Consensus 212 g~~~~~~~~~~--~~~~g~~~~a~~gtl~l~~i~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~ 289 (445)
T TIGR02915 212 GYEKGAFTGAV--KQTLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMI 289 (445)
T ss_pred CCCCCCcCCCc--cCCCCceeECCCCEEEEechhhCCHHHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHHHHH
Confidence 865442 2211 1122345567789999999999999999999999999988776655544569999999999877655
Q ss_pred cccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccc-cEEEcCCCC
Q 003088 788 KGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRID-EVVVFRSLE 839 (849)
Q Consensus 788 ~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d-~~i~f~pl~ 839 (849)
..+. |+++|++|+. ..|.+|||.
T Consensus 290 ~~~~-----------------------------~~~~L~~~l~~~~i~lPpLr 313 (445)
T TIGR02915 290 AEGT-----------------------------FREDLFYRIAEISITIPPLR 313 (445)
T ss_pred HcCC-----------------------------ccHHHHHHhccceecCCCch
Confidence 4443 8999999996 577788877
No 164
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=4.8e-14 Score=157.94 Aligned_cols=173 Identities=20% Similarity=0.325 Sum_probs=110.8
Q ss_pred CHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCC----
Q 003088 613 TADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSES---- 688 (849)
Q Consensus 613 ~~~~~~~~~~l~~~l~~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~---- 688 (849)
.+.+++++..+ ++++||+.++..|..++...+.+ ..+||+||+|||||++|+.+|+.+.+...
T Consensus 7 ~L~~KyRP~~f-----~dvVGQe~iv~~L~~~i~~~ri~--------ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~ 73 (484)
T PRK14956 7 VLSRKYRPQFF-----RDVIHQDLAIGALQNALKSGKIG--------HAYIFFGPRGVGKTTIARILAKRLNCENPIGNE 73 (484)
T ss_pred hhHHHhCCCCH-----HHHhChHHHHHHHHHHHHcCCCC--------eEEEEECCCCCCHHHHHHHHHHhcCcccccCcc
Confidence 34455555555 45899999999998888754321 23899999999999999999999854321
Q ss_pred ceeEee-ccccccccccccccC-CCCCccccccCcchhHHHH----hCCCeEEEEeCccccCHHHHHHHHHHhhcCeeec
Q 003088 689 SMLRLD-MSEYMERHTVSKLIG-SPPGYVGYEEGGLLTEAIR----RRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTD 762 (849)
Q Consensus 689 ~~i~i~-~~~~~~~~~~~~l~g-~~~g~vg~~~~~~l~~~i~----~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~ 762 (849)
++-.++ |..+...... .++- .+....|.+....+.+.+. ...+.|+||||+|.++..++|.||+.||+
T Consensus 74 pCg~C~sC~~i~~g~~~-dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEE----- 147 (484)
T PRK14956 74 PCNECTSCLEITKGISS-DVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEE----- 147 (484)
T ss_pred ccCCCcHHHHHHccCCc-cceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhc-----
Confidence 111110 1111111000 0100 0001112222122222222 23457999999999999999999999988
Q ss_pred CCCceeecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHH
Q 003088 763 SHGRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQ 842 (849)
Q Consensus 763 ~~g~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~ 842 (849)
...+++||++|+.... +.+.+++|| ..+.|.+++.++
T Consensus 148 ------Pp~~viFILaTte~~k------------------------------------I~~TI~SRC-q~~~f~~ls~~~ 184 (484)
T PRK14956 148 ------PPAHIVFILATTEFHK------------------------------------IPETILSRC-QDFIFKKVPLSV 184 (484)
T ss_pred ------CCCceEEEeecCChhh------------------------------------ccHHHHhhh-heeeecCCCHHH
Confidence 3458899988875211 678999999 789999999887
Q ss_pred Hcccc
Q 003088 843 VCQLP 847 (849)
Q Consensus 843 ~~~I~ 847 (849)
+.+.+
T Consensus 185 i~~~L 189 (484)
T PRK14956 185 LQDYS 189 (484)
T ss_pred HHHHH
Confidence 76544
No 165
>PLN03025 replication factor C subunit; Provisional
Probab=99.51 E-value=7.4e-14 Score=153.24 Aligned_cols=158 Identities=19% Similarity=0.288 Sum_probs=109.2
Q ss_pred CHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCC--ce
Q 003088 613 TADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSES--SM 690 (849)
Q Consensus 613 ~~~~~~~~~~l~~~l~~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~--~~ 690 (849)
+|.+++++..+.+ ++||++++..|...+... . ..|+||+||||||||++|+++++.+++... .+
T Consensus 2 ~w~~kyrP~~l~~-----~~g~~~~~~~L~~~~~~~-------~--~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~ 67 (319)
T PLN03025 2 PWVEKYRPTKLDD-----IVGNEDAVSRLQVIARDG-------N--MPNLILSGPPGTGKTTSILALAHELLGPNYKEAV 67 (319)
T ss_pred ChhhhcCCCCHHH-----hcCcHHHHHHHHHHHhcC-------C--CceEEEECCCCCCHHHHHHHHHHHHhcccCccce
Confidence 5777888877755 889999998887665431 1 235999999999999999999999876432 34
Q ss_pred eEeeccccccccccccccCCCCCccccccCcchhHHHH------hCCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCC
Q 003088 691 LRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIR------RRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSH 764 (849)
Q Consensus 691 i~i~~~~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~i~------~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~ 764 (849)
+.++.++......+. ..+..... ...+.|++|||+|.++...|+.|++.||.
T Consensus 68 ~eln~sd~~~~~~vr---------------~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~------- 125 (319)
T PLN03025 68 LELNASDDRGIDVVR---------------NKIKMFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEI------- 125 (319)
T ss_pred eeecccccccHHHHH---------------HHHHHHHhccccCCCCCeEEEEEechhhcCHHHHHHHHHHHhc-------
Confidence 444443321110000 00101000 12357999999999999999999999986
Q ss_pred CceeecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHHHc
Q 003088 765 GRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVC 844 (849)
Q Consensus 765 g~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~ 844 (849)
....++||+++|.... +.++|.+|+ ..+.|.|++.+++.
T Consensus 126 ----~~~~t~~il~~n~~~~------------------------------------i~~~L~SRc-~~i~f~~l~~~~l~ 164 (319)
T PLN03025 126 ----YSNTTRFALACNTSSK------------------------------------IIEPIQSRC-AIVRFSRLSDQEIL 164 (319)
T ss_pred ----ccCCceEEEEeCCccc------------------------------------cchhHHHhh-hcccCCCCCHHHHH
Confidence 1235778999986321 557888898 68899999988876
Q ss_pred ccc
Q 003088 845 QLP 847 (849)
Q Consensus 845 ~I~ 847 (849)
+.+
T Consensus 165 ~~L 167 (319)
T PLN03025 165 GRL 167 (319)
T ss_pred HHH
Confidence 654
No 166
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.51 E-value=4.2e-14 Score=163.65 Aligned_cols=162 Identities=20% Similarity=0.303 Sum_probs=106.2
Q ss_pred ccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCC----ceeEe-eccccccccc
Q 003088 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSES----SMLRL-DMSEYMERHT 703 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~----~~i~i-~~~~~~~~~~ 703 (849)
++|+||+.+++.|...+...+. ...+||+||+|||||++|+++++.+++... ++-.+ .|..+.....
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gRL--------~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h 87 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGRL--------HHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRF 87 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCCC--------CeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCC
Confidence 5699999999999888864321 123799999999999999999999854211 11110 1122211110
Q ss_pred cccccC-CCCCccccccCcchhHHHH----hCCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEe
Q 003088 704 VSKLIG-SPPGYVGYEEGGLLTEAIR----RRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMT 778 (849)
Q Consensus 704 ~~~l~g-~~~g~vg~~~~~~l~~~i~----~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~t 778 (849)
.. ++- ......|.++...+.+.+. ...+.|+||||+|+|+...+|.||+.||+ ...+++||++
T Consensus 88 ~D-viEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEE-----------PP~~v~FILa 155 (830)
T PRK07003 88 VD-YVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEE-----------PPPHVKFILA 155 (830)
T ss_pred ce-EEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHh-----------cCCCeEEEEE
Confidence 10 110 0001122222111222222 13468999999999999999999999998 3458899999
Q ss_pred cCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHHHcccc
Q 003088 779 SNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQLP 847 (849)
Q Consensus 779 sn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~I~ 847 (849)
||.... +.+.+++|| ..+.|.+++.+++.+++
T Consensus 156 Ttd~~K------------------------------------Ip~TIrSRC-q~f~Fk~Ls~eeIv~~L 187 (830)
T PRK07003 156 TTDPQK------------------------------------IPVTVLSRC-LQFNLKQMPAGHIVSHL 187 (830)
T ss_pred ECChhh------------------------------------ccchhhhhe-EEEecCCcCHHHHHHHH
Confidence 886321 668899999 89999999998886554
No 167
>PRK15115 response regulator GlrR; Provisional
Probab=99.51 E-value=4.3e-13 Score=154.52 Aligned_cols=172 Identities=16% Similarity=0.210 Sum_probs=127.3
Q ss_pred cccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccccccC
Q 003088 630 RVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIG 709 (849)
Q Consensus 630 ~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g 709 (849)
.++|.+..+..+...+...... ..+++++|++||||+++|+.+++...+.+.+|+.++|..+.+....+.+||
T Consensus 135 ~lig~s~~~~~~~~~~~~~a~~-------~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~lfg 207 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVAQS-------DVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFG 207 (444)
T ss_pred cccccCHHHHHHHHHHHhhccC-------CCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHHhcC
Confidence 3567666666655555443211 123999999999999999999999877788999999999877666677888
Q ss_pred CCCCcc-ccccCcchhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCchhhhc
Q 003088 710 SPPGYV-GYEEGGLLTEAIRRRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAK 788 (849)
Q Consensus 710 ~~~g~v-g~~~~~~l~~~i~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~~ 788 (849)
...|.. |... ...+.+..+.+++|||||||.+++..|..|+++|+++.+...++......++++|+||+.+...+..
T Consensus 208 ~~~~~~~~~~~--~~~g~~~~a~~gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~l~~~~~ 285 (444)
T PRK15115 208 HARGAFTGAVS--NREGLFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMA 285 (444)
T ss_pred CCcCCCCCCcc--CCCCcEEECCCCEEEEEccccCCHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCCHHHHHH
Confidence 754422 2111 1123345567899999999999999999999999999886555544444589999999987665554
Q ss_pred ccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccc-cEEEcCCCC
Q 003088 789 GRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRID-EVVVFRSLE 839 (849)
Q Consensus 789 ~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d-~~i~f~pl~ 839 (849)
.+. |+++|++|++ ..|..|||.
T Consensus 286 ~~~-----------------------------f~~~l~~~l~~~~i~lPpLr 308 (444)
T PRK15115 286 RGE-----------------------------FREDLYYRLNVVSLKIPALA 308 (444)
T ss_pred cCC-----------------------------ccHHHHHhhceeeecCCChH
Confidence 433 8999999996 466677776
No 168
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=3.2e-14 Score=162.74 Aligned_cols=161 Identities=20% Similarity=0.324 Sum_probs=106.6
Q ss_pred ccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCC---------CceeEe-ecccc
Q 003088 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSE---------SSMLRL-DMSEY 698 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~---------~~~i~i-~~~~~ 698 (849)
++|+||+.+++.|.+++...+. ...+||+||+|||||++|+.+++.+.+.+ .++-.+ .|..+
T Consensus 16 ddVIGQe~vv~~L~~al~~gRL--------pHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I 87 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQRL--------HHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEI 87 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCCC--------ceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHH
Confidence 5699999999999999876432 12379999999999999999999986521 011111 11111
Q ss_pred ccccccccccC-CCCCccccccCcchhHHHHh----CCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCe
Q 003088 699 MERHTVSKLIG-SPPGYVGYEEGGLLTEAIRR----RPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNA 773 (849)
Q Consensus 699 ~~~~~~~~l~g-~~~g~vg~~~~~~l~~~i~~----~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~ 773 (849)
...... .++. .+....|.++...+.+.+.. ..+.|+||||+|.|+...+|.||+.||+ ...++
T Consensus 88 ~aG~hp-DviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEE-----------PP~~v 155 (700)
T PRK12323 88 DAGRFV-DYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEE-----------PPEHV 155 (700)
T ss_pred HcCCCC-cceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhcc-----------CCCCc
Confidence 111101 1111 01112233322223333322 3467999999999999999999999998 34578
Q ss_pred EEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHHHccc
Q 003088 774 LIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQL 846 (849)
Q Consensus 774 ~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~I 846 (849)
+||++||.... +.+.+++|| ..+.|.+++.+++.+.
T Consensus 156 ~FILaTtep~k------------------------------------LlpTIrSRC-q~f~f~~ls~eei~~~ 191 (700)
T PRK12323 156 KFILATTDPQK------------------------------------IPVTVLSRC-LQFNLKQMPPGHIVSH 191 (700)
T ss_pred eEEEEeCChHh------------------------------------hhhHHHHHH-HhcccCCCChHHHHHH
Confidence 89998885221 668899999 8889999998877654
No 169
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.50 E-value=1e-13 Score=155.61 Aligned_cols=159 Identities=24% Similarity=0.404 Sum_probs=112.2
Q ss_pred ccccccHHHHHHHHHHHHHh--------hcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeecccccc
Q 003088 629 KRVIGQDEAVAAISRAVKRS--------RVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYME 700 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~~--------~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~ 700 (849)
+.|.|.++.++.+...+... ..|...| .++||+||||||||++|+++|+.+ +.+|+.++++++..
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p----~gvLL~GppGtGKT~lAkaia~~~---~~~~i~v~~~~l~~ 203 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPP----KGVLLYGPPGTGKTLLAKAVAHET---NATFIRVVGSELVQ 203 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCC----CceEEECCCCCChHHHHHHHHHHh---CCCEEEeehHHHhH
Confidence 45889999999988877432 2344333 349999999999999999999986 56799998877643
Q ss_pred ccccccccCCCCCccccccC--cchhHHHHhCCCeEEEEeCcccc-----------CHHHHHHHHHHhhcCeeecCCCce
Q 003088 701 RHTVSKLIGSPPGYVGYEEG--GLLTEAIRRRPFTLLLLDEIEKA-----------HPDIFNILLQVFEDGHLTDSHGRR 767 (849)
Q Consensus 701 ~~~~~~l~g~~~g~vg~~~~--~~l~~~i~~~~~~vl~lDEid~l-----------~~~~~~~Ll~~le~g~~~~~~g~~ 767 (849)
. |+|..+. ..+....+...++||||||+|.+ +++++..|++++..-.-..
T Consensus 204 ~------------~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~----- 266 (389)
T PRK03992 204 K------------FIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFD----- 266 (389)
T ss_pred h------------hccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccC-----
Confidence 2 3343321 12333334455799999999987 4566777777664311001
Q ss_pred eecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhh--ccccEEEcCCCCHHHHcc
Q 003088 768 VSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLN--RIDEVVVFRSLEKAQVCQ 845 (849)
Q Consensus 768 ~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~--R~d~~i~f~pl~~~~~~~ 845 (849)
...+++||+|||... .+++.|+. |||..|.|++++.++..+
T Consensus 267 -~~~~v~VI~aTn~~~------------------------------------~ld~allRpgRfd~~I~v~~P~~~~R~~ 309 (389)
T PRK03992 267 -PRGNVKIIAATNRID------------------------------------ILDPAILRPGRFDRIIEVPLPDEEGRLE 309 (389)
T ss_pred -CCCCEEEEEecCChh------------------------------------hCCHHHcCCccCceEEEECCCCHHHHHH
Confidence 123788999999731 16788884 999999999999999888
Q ss_pred ccC
Q 003088 846 LPL 848 (849)
Q Consensus 846 I~~ 848 (849)
|++
T Consensus 310 Il~ 312 (389)
T PRK03992 310 ILK 312 (389)
T ss_pred HHH
Confidence 875
No 170
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=5.6e-13 Score=140.97 Aligned_cols=192 Identities=19% Similarity=0.186 Sum_probs=128.3
Q ss_pred CCcchhHHhhhhhhHHHH----hhcC-CCCccccHHHHHHHHHHHhc--------CCCCCCeEeCCCCChHHHHHHHHHH
Q 003088 267 RTRASALEQFCVDLTARA----SEEL-IDPVIGRETEIQRIIQILCR--------RTKNNPILLGESGVGKTAIAEGLAI 333 (849)
Q Consensus 267 ~~~~~~l~~~~~~l~~~~----~~~~-l~~iiG~~~~i~~l~~~l~~--------~~~~niLL~GppGtGKT~la~~la~ 333 (849)
+|+...++.+-.++.-.. ++.. |+++|-....-+++.++... ..-+|++||||||||||.+|+.||+
T Consensus 327 ~pw~gsls~~k~~i~~~~~~s~~gk~pl~~ViL~psLe~Rie~lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr 406 (630)
T KOG0742|consen 327 FPWIGSLSALKHPIQGSRSASSRGKDPLEGVILHPSLEKRIEDLAIATANTKKHQAPFRNILFYGPPGTGKTMFARELAR 406 (630)
T ss_pred CCCcccHHHHhchhhhhHhhhhcCCCCcCCeecCHHHHHHHHHHHHHhcccccccchhhheeeeCCCCCCchHHHHHHHh
Confidence 456666666554443322 2223 88888888777776665421 1236899999999999999999998
Q ss_pred HhhhCCCCccccCCeEEEeehhhhhccccccchHHHHHHHHHHHHHhc-CCeEEEEcCcchhhhCCCCCCCCCCccHHHH
Q 003088 334 RIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTGLDIS 412 (849)
Q Consensus 334 ~l~~~~~p~~~~~~~~~~l~~~~~~~~~~~~g~~e~~l~~l~~~~~~~-~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~ 412 (849)
.- +...-...-+++ ..--.+-..++..+|+.++++ .+.+|||||+|.++-.++.. .-++....+.
T Consensus 407 ~S----------GlDYA~mTGGDV---APlG~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnkt-ymSEaqRsaL 472 (630)
T KOG0742|consen 407 HS----------GLDYAIMTGGDV---APLGAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKT-YMSEAQRSAL 472 (630)
T ss_pred hc----------CCceehhcCCCc---cccchHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchh-hhcHHHHHHH
Confidence 75 111111111111 011124566789999999875 57899999999987544331 0001223334
Q ss_pred HHHhhhh--cCCCeEEEEccChHHHHHHhhccHHHHhccc-cEEecCCCHHHHHHHHHHHHHHHHhhc
Q 003088 413 NLLKPSL--GRGELQCIASTTQDEHRTQFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEAHH 477 (849)
Q Consensus 413 ~~L~~~l--e~~~i~vI~at~~~~~~~~~~~d~al~~Rf~-~i~~~~ps~~e~~~iL~~~~~~~~~~~ 477 (849)
|.|+--. ...+++++.+||.++ .+|.++-.||+ .|+|+.|..+||.++|.-++++|....
T Consensus 473 NAlLfRTGdqSrdivLvlAtNrpg-----dlDsAV~DRide~veFpLPGeEERfkll~lYlnkyi~~~ 535 (630)
T KOG0742|consen 473 NALLFRTGDQSRDIVLVLATNRPG-----DLDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKYILKP 535 (630)
T ss_pred HHHHHHhcccccceEEEeccCCcc-----chhHHHHhhhhheeecCCCChHHHHHHHHHHHHHHhcCc
Confidence 4443211 245799999999998 89999999997 799999999999999999999886443
No 171
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.50 E-value=5.6e-13 Score=154.50 Aligned_cols=209 Identities=19% Similarity=0.139 Sum_probs=139.4
Q ss_pred CCccccHHHHHHHHHHHhc----CCCCCC-eEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhh------
Q 003088 290 DPVIGRETEIQRIIQILCR----RTKNNP-ILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM------ 358 (849)
Q Consensus 290 ~~iiG~~~~i~~l~~~l~~----~~~~ni-LL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~------ 358 (849)
+.+.||+++++.|..+|.. ...+++ +|+|+||||||++++.+.+++........+....++.+++..+.
T Consensus 755 D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIY 834 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAY 834 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHH
Confidence 4688999999998887743 334455 59999999999999999988853211111113455566552211
Q ss_pred --------ccccccc-hHHHHHHHHHHHHHh--cCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhh-hhcCCCeEE
Q 003088 359 --------AGAKERG-ELEARVTTLISEIQK--SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKP-SLGRGELQC 426 (849)
Q Consensus 359 --------~~~~~~g-~~e~~l~~l~~~~~~--~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~-~le~~~i~v 426 (849)
......| ...+.+..++..+.. ....||+|||||.|... ....+.+++.. ......+.+
T Consensus 835 qvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK---------~QDVLYnLFR~~~~s~SKLiL 905 (1164)
T PTZ00112 835 QVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITK---------TQKVLFTLFDWPTKINSKLVL 905 (1164)
T ss_pred HHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCcc---------HHHHHHHHHHHhhccCCeEEE
Confidence 1111112 234456666666533 23469999999999532 12223344432 223567899
Q ss_pred EEccChHHHHHHhhccHHHHhccc--cEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhcccccCcchh
Q 003088 427 IASTTQDEHRTQFEKDKALARRFQ--PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPD 504 (849)
Q Consensus 427 I~at~~~~~~~~~~~d~al~~Rf~--~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~~~r~~p~ 504 (849)
||++|..++.. .+++.+++||. .|.|++++.+|+.+||+..++.. ...++++++..++..++..-.+ -.
T Consensus 906 IGISNdlDLpe--rLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A----~gVLdDdAIELIArkVAq~SGD---AR 976 (1164)
T PTZ00112 906 IAISNTMDLPE--RLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENC----KEIIDHTAIQLCARKVANVSGD---IR 976 (1164)
T ss_pred EEecCchhcch--hhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhC----CCCCCHHHHHHHHHhhhhcCCH---HH
Confidence 99999766444 56789999996 49999999999999999877642 3468999999998866643221 24
Q ss_pred hHHHHHHHHhhH
Q 003088 505 KAIDLVDEAGSR 516 (849)
Q Consensus 505 ~ai~ll~~a~~~ 516 (849)
+|+++|..|+..
T Consensus 977 KALDILRrAgEi 988 (1164)
T PTZ00112 977 KALQICRKAFEN 988 (1164)
T ss_pred HHHHHHHHHHhh
Confidence 888999888763
No 172
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.50 E-value=4.8e-13 Score=135.51 Aligned_cols=202 Identities=16% Similarity=0.221 Sum_probs=156.4
Q ss_pred hHHHHhhcCCCCccccHHHHHHHHHHHhcCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeE--------E-
Q 003088 280 LTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRI--------M- 350 (849)
Q Consensus 280 l~~~~~~~~l~~iiG~~~~i~~l~~~l~~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~--------~- 350 (849)
|.++|||..++.++++++.-..+....+...-+|+++|||+|+||-|.+.+|.+++...+++......+- +
T Consensus 3 Wvdkyrpksl~~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklE 82 (351)
T KOG2035|consen 3 WVDKYRPKSLDELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLE 82 (351)
T ss_pred chhhcCcchhhhcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEE
Confidence 7889999999999999999999999888777899999999999999999999999987555533211111 1
Q ss_pred --------EeehhhhhccccccchHHHHHHHHHHHHHhc---------CCeEEEEcCcchhhhCCCCCCCCCCccHHHHH
Q 003088 351 --------SLDMGLLMAGAKERGELEARVTTLISEIQKS---------GDVILFIDEVHTLIGSGTVGRGNKGTGLDISN 413 (849)
Q Consensus 351 --------~l~~~~~~~~~~~~g~~e~~l~~l~~~~~~~---------~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~ 413 (849)
.+.+....+|..++-- +.++++++.+. .-.|++|-|+|.| +.|+|.
T Consensus 83 istvsS~yHlEitPSDaG~~DRvV----iQellKevAQt~qie~~~qr~fKvvvi~ead~L-------------T~dAQ~ 145 (351)
T KOG2035|consen 83 ISTVSSNYHLEITPSDAGNYDRVV----IQELLKEVAQTQQIETQGQRPFKVVVINEADEL-------------TRDAQH 145 (351)
T ss_pred EEEecccceEEeChhhcCcccHHH----HHHHHHHHHhhcchhhccccceEEEEEechHhh-------------hHHHHH
Confidence 1112222233333322 44555555431 2369999999999 789999
Q ss_pred HHhhhhc--CCCeEEEEccChHHHHHHhhccHHHHhccccEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHH
Q 003088 414 LLKPSLG--RGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVH 491 (849)
Q Consensus 414 ~L~~~le--~~~i~vI~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ 491 (849)
.|+..+| .+.+++|..+|... .+-+++++||-.|.++.|+.+|...++...++ ++++.++.+.+..+++
T Consensus 146 aLRRTMEkYs~~~RlIl~cns~S-----riIepIrSRCl~iRvpaps~eeI~~vl~~v~~----kE~l~lp~~~l~rIa~ 216 (351)
T KOG2035|consen 146 ALRRTMEKYSSNCRLILVCNSTS-----RIIEPIRSRCLFIRVPAPSDEEITSVLSKVLK----KEGLQLPKELLKRIAE 216 (351)
T ss_pred HHHHHHHHHhcCceEEEEecCcc-----cchhHHhhheeEEeCCCCCHHHHHHHHHHHHH----HhcccCcHHHHHHHHH
Confidence 9999998 47788888888776 78899999999999999999999999999888 7889999999999999
Q ss_pred hhhcccccCcchhhHHHHHHHH
Q 003088 492 LSARYISDRYLPDKAIDLVDEA 513 (849)
Q Consensus 492 ls~~~~~~r~~p~~ai~ll~~a 513 (849)
.++|-+. +|+-+++.+
T Consensus 217 kS~~nLR------rAllmlE~~ 232 (351)
T KOG2035|consen 217 KSNRNLR------RALLMLEAV 232 (351)
T ss_pred HhcccHH------HHHHHHHHH
Confidence 9988653 555544443
No 173
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=99.50 E-value=4.3e-14 Score=135.55 Aligned_cols=137 Identities=20% Similarity=0.336 Sum_probs=103.6
Q ss_pred cccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccccccCCC
Q 003088 632 IGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSP 711 (849)
Q Consensus 632 ~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~ 711 (849)
+|.+.+++.+.+.+....... .+|||+|++||||+++|+.||........+|+.++|....
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~-------~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~------------ 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSS-------SPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP------------ 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSS-------S-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC------------
T ss_pred CCCCHHHHHHHHHHHHHhCCC-------CcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc------------
Confidence 588899999999998764322 2399999999999999999999876666788888887532
Q ss_pred CCccccccCcchhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCchhhhcccC
Q 003088 712 PGYVGYEEGGLLTEAIRRRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKGRH 791 (849)
Q Consensus 712 ~g~vg~~~~~~l~~~i~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~~~~~ 791 (849)
.+.+.++.+++|||+|||.++++.|..|++.|+... ..++++|+|++.+...+.+.+.
T Consensus 62 ------------~~~l~~a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~----------~~~~RlI~ss~~~l~~l~~~~~ 119 (138)
T PF14532_consen 62 ------------AELLEQAKGGTLYLKNIDRLSPEAQRRLLDLLKRQE----------RSNVRLIASSSQDLEELVEEGR 119 (138)
T ss_dssp ------------HHHHHHCTTSEEEEECGCCS-HHHHHHHHHHHHHCT----------TTTSEEEEEECC-CCCHHHHST
T ss_pred ------------HHHHHHcCCCEEEECChHHCCHHHHHHHHHHHHhcC----------CCCeEEEEEeCCCHHHHhhccc
Confidence 234555678999999999999999999999998721 2478999999998776654443
Q ss_pred CccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccc-cEEEcCCC
Q 003088 792 GSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRID-EVVVFRSL 838 (849)
Q Consensus 792 ~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d-~~i~f~pl 838 (849)
|.++|++||+ ..|..|||
T Consensus 120 -----------------------------~~~~L~~~l~~~~i~lPpL 138 (138)
T PF14532_consen 120 -----------------------------FSPDLYYRLSQLEIHLPPL 138 (138)
T ss_dssp -----------------------------HHHHHHHHCSTCEEEE---
T ss_pred -----------------------------hhHHHHHHhCCCEEeCCCC
Confidence 8899999997 57777775
No 174
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.50 E-value=6.7e-14 Score=160.15 Aligned_cols=187 Identities=23% Similarity=0.242 Sum_probs=122.3
Q ss_pred ccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccc-----
Q 003088 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHT----- 703 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~----- 703 (849)
+.++||+.+++.+..++. +. .+++|.||||||||++|+.++..+..... -..++...+.....
T Consensus 192 ~dv~Gq~~~~~al~~aa~----~g-------~~vlliG~pGsGKTtlar~l~~llp~~~~-~~~le~~~i~s~~g~~~~~ 259 (499)
T TIGR00368 192 KDIKGQQHAKRALEIAAA----GG-------HNLLLFGPPGSGKTMLASRLQGILPPLTN-EEAIETARIWSLVGKLIDR 259 (499)
T ss_pred HHhcCcHHHHhhhhhhcc----CC-------CEEEEEecCCCCHHHHHHHHhcccCCCCC-cEEEeccccccchhhhccc
Confidence 568999988766544432 22 25999999999999999999987633211 11222222110000
Q ss_pred ---cccccCC------CCCccccccCcchhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhhcCeeecC--CCceeecCC
Q 003088 704 ---VSKLIGS------PPGYVGYEEGGLLTEAIRRRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDS--HGRRVSFKN 772 (849)
Q Consensus 704 ---~~~l~g~------~~g~vg~~~~~~l~~~i~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~--~g~~~~~~~ 772 (849)
...-|-. ..+.+|-. .....+.+..+.++||||||++.+++.+|+.|++.||++.+... ++......+
T Consensus 260 ~~~~~~Pf~~p~~s~s~~~~~ggg-~~~~pG~i~lA~~GvLfLDEi~e~~~~~~~~L~~~LE~~~v~i~r~g~~~~~pa~ 338 (499)
T TIGR00368 260 KQIKQRPFRSPHHSASKPALVGGG-PIPLPGEISLAHNGVLFLDELPEFKRSVLDALREPIEDGSISISRASAKIFYPAR 338 (499)
T ss_pred cccccCCccccccccchhhhhCCc-cccchhhhhccCCCeEecCChhhCCHHHHHHHHHHHHcCcEEEEecCcceeccCC
Confidence 0000000 00111100 01234466778889999999999999999999999999987543 333333359
Q ss_pred eEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhh---CChHHhhccccEEEcCCCCHHHHc
Q 003088 773 ALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAY---FRPELLNRIDEVVVFRSLEKAQVC 844 (849)
Q Consensus 773 ~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~---~~pell~R~d~~i~f~pl~~~~~~ 844 (849)
+++|+++|+ |+|||..++.. -|.|...++.+| +..+|++|||.++.+++++.+++.
T Consensus 339 frlIaa~Np----------cpcg~~~~~~~------~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~~l~ 397 (499)
T TIGR00368 339 FQLVAAMNP----------CPCGHYGGKNT------HCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPEKLL 397 (499)
T ss_pred eEEEEecCC----------cccCcCCCCcc------cccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHHHHh
Confidence 999999998 56887754322 266677676665 679999999999999999877663
No 175
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=99.50 E-value=4e-14 Score=159.64 Aligned_cols=170 Identities=21% Similarity=0.277 Sum_probs=136.4
Q ss_pred cccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccccccCCC
Q 003088 632 IGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSP 711 (849)
Q Consensus 632 ~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~ 711 (849)
++.+..+..+.+.+.+...- ..++++.|+|||||..+|+++++.+- ...||+.++|..+.+.+..+.|||.-
T Consensus 316 ~~~d~s~a~l~rk~~rv~~~-------~~pvll~GEtGtGKe~laraiH~~s~-~~gpfvAvNCaAip~~liesELFGy~ 387 (606)
T COG3284 316 PLLDPSRATLLRKAERVAAT-------DLPVLLQGETGTGKEVLARAIHQNSE-AAGPFVAVNCAAIPEALIESELFGYV 387 (606)
T ss_pred cccCHHHHHHHHHHHHHhhc-------CCCeEecCCcchhHHHHHHHHHhccc-ccCCeEEEEeccchHHhhhHHHhccC
Confidence 45555565555555543211 12399999999999999999999986 78999999999999999999999965
Q ss_pred CCc-cccccCcchhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCchhhhccc
Q 003088 712 PGY-VGYEEGGLLTEAIRRRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKGR 790 (849)
Q Consensus 712 ~g~-vg~~~~~~l~~~i~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~~~~ 790 (849)
+|. .|.... --...+.++++++||+|||..|+...|..||++|++|.++.-+|+. ..-+++||.+|+.+...++.++
T Consensus 388 ~GafTga~~k-G~~g~~~~A~gGtlFldeIgd~p~~~Qs~LLrVl~e~~v~p~g~~~-~~vdirvi~ath~dl~~lv~~g 465 (606)
T COG3284 388 AGAFTGARRK-GYKGKLEQADGGTLFLDEIGDMPLALQSRLLRVLQEGVVTPLGGTR-IKVDIRVIAATHRDLAQLVEQG 465 (606)
T ss_pred ccccccchhc-cccccceecCCCccHHHHhhhchHHHHHHHHHHHhhCceeccCCcc-eeEEEEEEeccCcCHHHHHHcC
Confidence 542 222211 1223456778899999999999999999999999999999988877 5569999999999999998877
Q ss_pred CCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccc-cEEEcCCCCH
Q 003088 791 HGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRID-EVVVFRSLEK 840 (849)
Q Consensus 791 ~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d-~~i~f~pl~~ 840 (849)
. |+.+||||+. ..|.+|||.+
T Consensus 466 ~-----------------------------fredLyyrL~~~~i~lP~lr~ 487 (606)
T COG3284 466 R-----------------------------FREDLYYRLNAFVITLPPLRE 487 (606)
T ss_pred C-----------------------------chHHHHHHhcCeeeccCchhc
Confidence 6 9999999995 6888888873
No 176
>PRK05642 DNA replication initiation factor; Validated
Probab=99.49 E-value=8.2e-13 Score=138.15 Aligned_cols=155 Identities=17% Similarity=0.210 Sum_probs=113.3
Q ss_pred CCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcC
Q 003088 311 KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDE 390 (849)
Q Consensus 311 ~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDE 390 (849)
.++++|+||+|+|||+|++++++++... +..++.++...+... ...+++.+... .+|+|||
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~-------~~~v~y~~~~~~~~~----------~~~~~~~~~~~--d~LiiDD 105 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQR-------GEPAVYLPLAELLDR----------GPELLDNLEQY--ELVCLDD 105 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhC-------CCcEEEeeHHHHHhh----------hHHHHHhhhhC--CEEEEec
Confidence 3678999999999999999999987543 456667776655421 12333334433 3899999
Q ss_pred cchhhhCCCCCCCCCCccHHHHHHHhhhhcCCCeEEEEccChHHHHHHhhccHHHHhcc---ccEEecCCCHHHHHHHHH
Q 003088 391 VHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRF---QPVLISEPSQEDAVRILL 467 (849)
Q Consensus 391 i~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~~i~vI~at~~~~~~~~~~~d~al~~Rf---~~i~~~~ps~~e~~~iL~ 467 (849)
++.+.+.. .....+.+++....+++..++|++++.+.+ +-...+.|++|| ..+.+.+|+.+++.++++
T Consensus 106 i~~~~~~~-------~~~~~Lf~l~n~~~~~g~~ilits~~~p~~--l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~ 176 (234)
T PRK05642 106 LDVIAGKA-------DWEEALFHLFNRLRDSGRRLLLAASKSPRE--LPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQ 176 (234)
T ss_pred hhhhcCCh-------HHHHHHHHHHHHHHhcCCEEEEeCCCCHHH--cCccCccHHHHHhcCeeeecCCCCHHHHHHHHH
Confidence 99884321 123456777777777888888888876652 223479999999 468999999999999998
Q ss_pred HHHHHHHhhcCCccCHHHHHHHHHhhhccc
Q 003088 468 GLREKYEAHHNCKFTLEAINAAVHLSARYI 497 (849)
Q Consensus 468 ~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~ 497 (849)
..+. ..++.++++++++++....+-.
T Consensus 177 ~ka~----~~~~~l~~ev~~~L~~~~~~d~ 202 (234)
T PRK05642 177 LRAS----RRGLHLTDEVGHFILTRGTRSM 202 (234)
T ss_pred HHHH----HcCCCCCHHHHHHHHHhcCCCH
Confidence 6554 3478999999999998877744
No 177
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.49 E-value=6.3e-14 Score=165.23 Aligned_cols=163 Identities=21% Similarity=0.310 Sum_probs=106.0
Q ss_pred ccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCC----ceeEe-eccccccccc
Q 003088 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSES----SMLRL-DMSEYMERHT 703 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~----~~i~i-~~~~~~~~~~ 703 (849)
++|+||+.+++.|.+++...+. ...+||+||+|||||++|+++++.+++... ++..+ .|-.+.+...
T Consensus 16 ddIIGQe~Iv~~LknaI~~~rl--------~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~ 87 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQRL--------HHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRF 87 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCCC--------CeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCC
Confidence 5699999999999988875422 123699999999999999999999865311 11111 1111111100
Q ss_pred cccccCCCCCccccccCcchhHHHH----hCCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEec
Q 003088 704 VSKLIGSPPGYVGYEEGGLLTEAIR----RRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTS 779 (849)
Q Consensus 704 ~~~l~g~~~g~vg~~~~~~l~~~i~----~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ts 779 (849)
...+.-.+....|.+....+.+.+. ...+.|+||||+|+|+...+|.||+.||+ ...+++||++|
T Consensus 88 ~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEE-----------PP~~vrFILaT 156 (944)
T PRK14949 88 VDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEE-----------PPEHVKFLLAT 156 (944)
T ss_pred ceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhc-----------cCCCeEEEEEC
Confidence 0000000011122222222333332 23467999999999999999999999998 34578888877
Q ss_pred CCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHHHcccc
Q 003088 780 NVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQLP 847 (849)
Q Consensus 780 n~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~I~ 847 (849)
+.... +.+.+++|| .++.|.|++.+++.+.+
T Consensus 157 Te~~k------------------------------------Ll~TIlSRC-q~f~fkpLs~eEI~~~L 187 (944)
T PRK14949 157 TDPQK------------------------------------LPVTVLSRC-LQFNLKSLTQDEIGTQL 187 (944)
T ss_pred CCchh------------------------------------chHHHHHhh-eEEeCCCCCHHHHHHHH
Confidence 64211 567899999 89999999999887544
No 178
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.49 E-value=1.2e-13 Score=157.21 Aligned_cols=158 Identities=25% Similarity=0.395 Sum_probs=106.5
Q ss_pred cccccHHHHHHHHHHHHH--------hhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCC-------CCceeEee
Q 003088 630 RVIGQDEAVAAISRAVKR--------SRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGS-------ESSMLRLD 694 (849)
Q Consensus 630 ~i~Gq~~~i~~l~~~l~~--------~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~-------~~~~i~i~ 694 (849)
.|.|.+..++.+...+.. ...|+..| ..+||+||||||||++|+++++.+... ...|+.+.
T Consensus 183 dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p----~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~ 258 (512)
T TIGR03689 183 DIGGLDSQIEQIRDAVELPFLHPELYREYDLKPP----KGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIK 258 (512)
T ss_pred HcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCC----cceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEecc
Confidence 467788888888777643 23354443 349999999999999999999987321 12233333
Q ss_pred ccccccccccccccCCCCCccccccCc--chhHHHHh----CCCeEEEEeCccccCH------------HHHHHHHHHhh
Q 003088 695 MSEYMERHTVSKLIGSPPGYVGYEEGG--LLTEAIRR----RPFTLLLLDEIEKAHP------------DIFNILLQVFE 756 (849)
Q Consensus 695 ~~~~~~~~~~~~l~g~~~g~vg~~~~~--~l~~~i~~----~~~~vl~lDEid~l~~------------~~~~~Ll~~le 756 (849)
.+++.. .|+|..+.. .++...+. ..++||||||+|.+-. .+.+.||..|+
T Consensus 259 ~~eLl~------------kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LD 326 (512)
T TIGR03689 259 GPELLN------------KYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELD 326 (512)
T ss_pred chhhcc------------cccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhc
Confidence 333222 255544321 22222222 2468999999998732 25678888887
Q ss_pred cCeeecCCCceeecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhh--ccccEEE
Q 003088 757 DGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLN--RIDEVVV 834 (849)
Q Consensus 757 ~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~--R~d~~i~ 834 (849)
.-. ...+++||+|||... .++|+|+. |||..|.
T Consensus 327 gl~---------~~~~ViVI~ATN~~d------------------------------------~LDpALlRpGRfD~~I~ 361 (512)
T TIGR03689 327 GVE---------SLDNVIVIGASNRED------------------------------------MIDPAILRPGRLDVKIR 361 (512)
T ss_pred ccc---------cCCceEEEeccCChh------------------------------------hCCHhhcCccccceEEE
Confidence 521 124789999999732 17899996 9999999
Q ss_pred cCCCCHHHHccccC
Q 003088 835 FRSLEKAQVCQLPL 848 (849)
Q Consensus 835 f~pl~~~~~~~I~~ 848 (849)
|++++.++..+|++
T Consensus 362 ~~~Pd~e~r~~Il~ 375 (512)
T TIGR03689 362 IERPDAEAAADIFS 375 (512)
T ss_pred eCCCCHHHHHHHHH
Confidence 99999999998874
No 179
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=99.48 E-value=7.2e-14 Score=143.44 Aligned_cols=211 Identities=23% Similarity=0.335 Sum_probs=138.6
Q ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCC--ceeEeecc
Q 003088 619 LLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSES--SMLRLDMS 696 (849)
Q Consensus 619 ~~~~l~~~l~~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~--~~i~i~~~ 696 (849)
++..|+..|...++||.-+++.|..+++... ..+.|.+|+. +-|+|+|||||..+++.||+.+|..+. +++..=.+
T Consensus 72 ~~~~Le~dL~~~lfGQHla~~~Vv~alk~~~-~n~~p~KPLv-LSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fva 149 (344)
T KOG2170|consen 72 DLDGLEKDLARALFGQHLAKQLVVNALKSHW-ANPNPRKPLV-LSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVA 149 (344)
T ss_pred cchHHHHHHHHHhhchHHHHHHHHHHHHHHh-cCCCCCCCeE-EEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhh
Confidence 4677889999999999999999999998654 4455899986 889999999999999999999876542 22211110
Q ss_pred ccccccccccccCCCCCccc-ccc--CcchhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCe
Q 003088 697 EYMERHTVSKLIGSPPGYVG-YEE--GGLLTEAIRRRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNA 773 (849)
Q Consensus 697 ~~~~~~~~~~l~g~~~g~vg-~~~--~~~l~~~i~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~ 773 (849)
.. -=..+.++. |.+ ...+.+.++.++.++++|||+|+|++.+.+.|-..+|.... ...++++++
T Consensus 150 t~---------hFP~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~gLld~lkpfLdyyp~----v~gv~frka 216 (344)
T KOG2170|consen 150 TL---------HFPHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPPGLLDVLKPFLDYYPQ----VSGVDFRKA 216 (344)
T ss_pred hc---------cCCChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcCHhHHHHHhhhhccccc----cccccccce
Confidence 00 000111221 111 22345556678889999999999999999999999986332 224678899
Q ss_pred EEEEecCCCchhhhcccC--CccccccccCCcccHHhHHHHHHHHH---H--hhCChHHh--hccccEEEcCCCCHHHHc
Q 003088 774 LIVMTSNVGSTTIAKGRH--GSIGFLLEDNESTSYAGMKTLVVEEL---K--AYFRPELL--NRIDEVVVFRSLEKAQVC 844 (849)
Q Consensus 774 ~iI~tsn~~~~~l~~~~~--~~~gf~~~~~~~~~~~~~~~~~~~~l---~--~~~~pell--~R~d~~i~f~pl~~~~~~ 844 (849)
|||+-||.+..+|.+.-. -..|.. +++...+.++..++... + ......++ ++||.+|+|.|+++.++.
T Consensus 217 IFIfLSN~gg~eI~~~aL~~~~~g~~---re~~~l~~~E~~L~~~~~n~~~~Gl~~S~li~~~lid~fIPFLPLek~hV~ 293 (344)
T KOG2170|consen 217 IFIFLSNAGGSEIARIALENARNGKP---REQLRLKSFEPALMQSAFNEKAGGLVHSRLISNNLIDHFIPFLPLEKRHVR 293 (344)
T ss_pred EEEEEcCCcchHHHHHHHHHHHcCCC---cccchhhhhhHHHHHhhhccccccccccccchhhHHhhccCcCcccHHHHH
Confidence 999999999877763210 011222 22222223332222111 1 11223333 778999999999998887
Q ss_pred ccc
Q 003088 845 QLP 847 (849)
Q Consensus 845 ~I~ 847 (849)
..+
T Consensus 294 ~C~ 296 (344)
T KOG2170|consen 294 SCI 296 (344)
T ss_pred HHH
Confidence 654
No 180
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=8.8e-14 Score=141.20 Aligned_cols=160 Identities=24% Similarity=0.375 Sum_probs=117.4
Q ss_pred ccccccHHHHHHHHHHHHH--------hhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeecccccc
Q 003088 629 KRVIGQDEAVAAISRAVKR--------SRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYME 700 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~--------~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~ 700 (849)
..+-|.+..++.|+.++.. -..|+++|. .+++||+||||||.+|+++|+.- ..-|+++-.+++..
T Consensus 185 ~diGGle~QiQEiKEsvELPLthPE~YeemGikpPK----GVIlyG~PGTGKTLLAKAVANqT---SATFlRvvGseLiQ 257 (440)
T KOG0726|consen 185 ADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPK----GVILYGEPGTGKTLLAKAVANQT---SATFLRVVGSELIQ 257 (440)
T ss_pred cccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCC----eeEEeCCCCCchhHHHHHHhccc---chhhhhhhhHHHHH
Confidence 5688899999999998843 344665554 39999999999999999999873 55688888887765
Q ss_pred ccccccccCCCCCcccccc--CcchhHHHHhCCCeEEEEeCcccc-----------CHHHHHHHHHHhhcCeeecCCCce
Q 003088 701 RHTVSKLIGSPPGYVGYEE--GGLLTEAIRRRPFTLLLLDEIEKA-----------HPDIFNILLQVFEDGHLTDSHGRR 767 (849)
Q Consensus 701 ~~~~~~l~g~~~g~vg~~~--~~~l~~~i~~~~~~vl~lDEid~l-----------~~~~~~~Ll~~le~g~~~~~~g~~ 767 (849)
+ |.|... -..++........+|+||||||.. ..++|..+|.+|..-.-.|.
T Consensus 258 k------------ylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFds---- 321 (440)
T KOG0726|consen 258 K------------YLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDS---- 321 (440)
T ss_pred H------------HhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccc----
Confidence 3 333332 123444445556799999999977 24688888877754221222
Q ss_pred eecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHh--hccccEEEcCCCCHHHHcc
Q 003088 768 VSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELL--NRIDEVVVFRSLEKAQVCQ 845 (849)
Q Consensus 768 ~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell--~R~d~~i~f~pl~~~~~~~ 845 (849)
..++-+|++||.-. .++|+|+ .|||..|.|+-++.....+
T Consensus 322 --rgDvKvimATnrie------------------------------------~LDPaLiRPGrIDrKIef~~pDe~Tkkk 363 (440)
T KOG0726|consen 322 --RGDVKVIMATNRIE------------------------------------TLDPALIRPGRIDRKIEFPLPDEKTKKK 363 (440)
T ss_pred --cCCeEEEEeccccc------------------------------------ccCHhhcCCCccccccccCCCchhhhce
Confidence 23889999999621 1789988 8999999999999999888
Q ss_pred ccCC
Q 003088 846 LPLI 849 (849)
Q Consensus 846 I~~l 849 (849)
|+.+
T Consensus 364 If~I 367 (440)
T KOG0726|consen 364 IFQI 367 (440)
T ss_pred eEEE
Confidence 8764
No 181
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=1.1e-13 Score=138.68 Aligned_cols=160 Identities=26% Similarity=0.419 Sum_probs=115.4
Q ss_pred ccccccHHHHHHHHHHHH--------HhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeecccccc
Q 003088 629 KRVIGQDEAVAAISRAVK--------RSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYME 700 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~--------~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~ 700 (849)
..+-|-.+.|+.++..++ ....|+.+|.. +|+|||||||||.+|+++|+. .+.-||++-.+++..
T Consensus 177 ~dvggckeqieklrevve~pll~perfv~lgidppkg----vllygppgtgktl~aravanr---tdacfirvigselvq 249 (435)
T KOG0729|consen 177 SDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKG----VLLYGPPGTGKTLCARAVANR---TDACFIRVIGSELVQ 249 (435)
T ss_pred ccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCc----eEEeCCCCCchhHHHHHHhcc---cCceEEeehhHHHHH
Confidence 345666666666666553 34556665543 999999999999999999986 467799998888765
Q ss_pred ccccccccCCCCCccccccC--cchhHHHHhCCCeEEEEeCcccc-----------CHHHHHHHHHHhhcCeeecCCCce
Q 003088 701 RHTVSKLIGSPPGYVGYEEG--GLLTEAIRRRPFTLLLLDEIEKA-----------HPDIFNILLQVFEDGHLTDSHGRR 767 (849)
Q Consensus 701 ~~~~~~l~g~~~g~vg~~~~--~~l~~~i~~~~~~vl~lDEid~l-----------~~~~~~~Ll~~le~g~~~~~~g~~ 767 (849)
+ |+|+... ..+++..+...-|++||||||.. +.++|..+|.++..-.-.|+.|
T Consensus 250 k------------yvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprg-- 315 (435)
T KOG0729|consen 250 K------------YVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRG-- 315 (435)
T ss_pred H------------HhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCC--
Confidence 3 6665532 22444455566799999999976 4578998888886422233333
Q ss_pred eecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHh--hccccEEEcCCCCHHHHcc
Q 003088 768 VSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELL--NRIDEVVVFRSLEKAQVCQ 845 (849)
Q Consensus 768 ~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell--~R~d~~i~f~pl~~~~~~~ 845 (849)
|+-++++||.+.. ++|+|+ .|+|..|.|.-++-+-...
T Consensus 316 ----nikvlmatnrpdt------------------------------------ldpallrpgrldrkvef~lpdlegrt~ 355 (435)
T KOG0729|consen 316 ----NIKVLMATNRPDT------------------------------------LDPALLRPGRLDRKVEFGLPDLEGRTH 355 (435)
T ss_pred ----CeEEEeecCCCCC------------------------------------cCHhhcCCcccccceeccCCcccccce
Confidence 8899999997532 788888 8999999998888777666
Q ss_pred ccCC
Q 003088 846 LPLI 849 (849)
Q Consensus 846 I~~l 849 (849)
|+++
T Consensus 356 i~ki 359 (435)
T KOG0729|consen 356 IFKI 359 (435)
T ss_pred eEEE
Confidence 6653
No 182
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.48 E-value=1.9e-12 Score=146.93 Aligned_cols=187 Identities=15% Similarity=0.199 Sum_probs=119.3
Q ss_pred CCCCcc-ccHHHHH--HHHHHHhc------CCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhh
Q 003088 288 LIDPVI-GRETEIQ--RIIQILCR------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM 358 (849)
Q Consensus 288 ~l~~ii-G~~~~i~--~l~~~l~~------~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~ 358 (849)
+|+.++ |..+... .+.++... ...++++|+||+|+|||++++++++.+... +.+++.++...+.
T Consensus 109 tFdnFv~g~~N~~a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~-------~~~v~yi~~~~f~ 181 (445)
T PRK12422 109 TFANFLVTPENDLPHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRES-------GGKILYVRSELFT 181 (445)
T ss_pred cccceeeCCcHHHHHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHc-------CCCEEEeeHHHHH
Confidence 466554 6665543 33333321 123678999999999999999999998653 4566666654432
Q ss_pred ccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCCCeEEEEccChHHHHHH
Q 003088 359 AGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438 (849)
Q Consensus 359 ~~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~~i~vI~at~~~~~~~~ 438 (849)
.. ....+...-...+.... ....+|+|||+|.+.+.. ....++..++....+.+..+++++++.+. .+
T Consensus 182 ~~--~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k~-------~~qeelf~l~N~l~~~~k~IIlts~~~p~--~l 249 (445)
T PRK12422 182 EH--LVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGKG-------ATQEEFFHTFNSLHTEGKLIVISSTCAPQ--DL 249 (445)
T ss_pred HH--HHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCCh-------hhHHHHHHHHHHHHHCCCcEEEecCCCHH--HH
Confidence 10 00000000001112111 234599999999984321 12445566666666667666666655443 23
Q ss_pred hhccHHHHhccc---cEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhccc
Q 003088 439 FEKDKALARRFQ---PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497 (849)
Q Consensus 439 ~~~d~al~~Rf~---~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~ 497 (849)
..+++.|.+||. .+.+.+|+.+++.+||+..++ ..++.++++++.+++....+-+
T Consensus 250 ~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~----~~~~~l~~evl~~la~~~~~di 307 (445)
T PRK12422 250 KAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAE----ALSIRIEETALDFLIEALSSNV 307 (445)
T ss_pred hhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHhcCCCH
Confidence 357899999995 699999999999999988777 4578999999998887666533
No 183
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=2.6e-13 Score=153.95 Aligned_cols=199 Identities=19% Similarity=0.254 Sum_probs=140.4
Q ss_pred CCccccHHHHHHHHHHHhcC------CCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhccc--
Q 003088 290 DPVIGRETEIQRIIQILCRR------TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGA-- 361 (849)
Q Consensus 290 ~~iiG~~~~i~~l~~~l~~~------~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~~~-- 361 (849)
.+..|.++..+++++.|.-+ +.+=+||+||||||||+|++.||+.+ +..++.+.++.+...+
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al----------~RkfvR~sLGGvrDEAEI 392 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKAL----------GRKFVRISLGGVRDEAEI 392 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHh----------CCCEEEEecCccccHHHh
Confidence 37899999999999987432 22445899999999999999999999 7778888776654222
Q ss_pred -----cccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhc----------------
Q 003088 362 -----KERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG---------------- 420 (849)
Q Consensus 362 -----~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le---------------- 420 (849)
-|.|.+-.++-+-+..+...+| +++|||||.|..+ ..-|-...|+.+|+
T Consensus 393 RGHRRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss---------~rGDPaSALLEVLDPEQN~~F~DhYLev~y 462 (782)
T COG0466 393 RGHRRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSS---------FRGDPASALLEVLDPEQNNTFSDHYLEVPY 462 (782)
T ss_pred ccccccccccCChHHHHHHHHhCCcCC-eEEeechhhccCC---------CCCChHHHHHhhcCHhhcCchhhccccCcc
Confidence 2445555555555555554444 8999999999321 11223445555553
Q ss_pred -CCCeEEEEccChHHHHHHhhccHHHHhccccEEecCCCHHHHHHHHHHHH-HHHHhhc-----CCccCHHHHHHHHHhh
Q 003088 421 -RGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLR-EKYEAHH-----NCKFTLEAINAAVHLS 493 (849)
Q Consensus 421 -~~~i~vI~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL~~~~-~~~~~~~-----~~~i~~~~l~~~a~ls 493 (849)
=.++.||+|.|.-+ .+..+|+.|+..|++.-++.+|.++|.+.++ .+....+ .+.|+++++..+.+..
T Consensus 463 DLS~VmFiaTANsl~-----tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~Y 537 (782)
T COG0466 463 DLSKVMFIATANSLD-----TIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYY 537 (782)
T ss_pred chhheEEEeecCccc-----cCChHHhcceeeeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHHHHH
Confidence 13478999999876 7899999999999999999999999998742 2222233 4679999998888766
Q ss_pred hcccccCcchhhHHHHHHHH
Q 003088 494 ARYISDRYLPDKAIDLVDEA 513 (849)
Q Consensus 494 ~~~~~~r~~p~~ai~ll~~a 513 (849)
.|-..-|.+-.....+++.+
T Consensus 538 TREAGVR~LeR~i~ki~RK~ 557 (782)
T COG0466 538 TREAGVRNLEREIAKICRKA 557 (782)
T ss_pred hHhhhhhHHHHHHHHHHHHH
Confidence 66555555444444444444
No 184
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.48 E-value=1.3e-12 Score=146.27 Aligned_cols=191 Identities=25% Similarity=0.302 Sum_probs=126.2
Q ss_pred ccccHHHHHHHHHHHhc----------------CCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehh
Q 003088 292 VIGRETEIQRIIQILCR----------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMG 355 (849)
Q Consensus 292 iiG~~~~i~~l~~~l~~----------------~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~ 355 (849)
+||+++.++.+...+.. ..+.|+||+||||||||++|++||..+ +.+++.+++.
T Consensus 73 ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l----------~~pf~~id~~ 142 (412)
T PRK05342 73 VIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL----------DVPFAIADAT 142 (412)
T ss_pred eeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh----------CCCceecchh
Confidence 89999999988665521 134789999999999999999999887 5666777766
Q ss_pred hhhccccccch-HHHHHHHHHHH----HHhcCCeEEEEcCcchhhhCCCCCCCC-CCccHHHHHHHhhhhcCCC------
Q 003088 356 LLMAGAKERGE-LEARVTTLISE----IQKSGDVILFIDEVHTLIGSGTVGRGN-KGTGLDISNLLKPSLGRGE------ 423 (849)
Q Consensus 356 ~~~~~~~~~g~-~e~~l~~l~~~----~~~~~~~ILfIDEi~~l~~~~~~~~~~-~~~~~~~~~~L~~~le~~~------ 423 (849)
.+.. ..|.|+ .+..+..+++. +....++||||||||.+...+.....+ ..++..+++.|+.+|+...
T Consensus 143 ~l~~-~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~ 221 (412)
T PRK05342 143 TLTE-AGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQ 221 (412)
T ss_pred hccc-CCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCC
Confidence 5432 234453 44444554432 234567899999999997653221111 1234568888888886321
Q ss_pred ---------eEEEEccCh--------H-------------------------------HHHH--------HhhccHHHHh
Q 003088 424 ---------LQCIASTTQ--------D-------------------------------EHRT--------QFEKDKALAR 447 (849)
Q Consensus 424 ---------i~vI~at~~--------~-------------------------------~~~~--------~~~~d~al~~ 447 (849)
.++|.|+|. . .+.+ .+.+.|.|..
T Consensus 222 gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflg 301 (412)
T PRK05342 222 GGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIG 301 (412)
T ss_pred CCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhC
Confidence 123333332 0 0001 1124688889
Q ss_pred ccc-cEEecCCCHHHHHHHHHH----HHHHHHh---h--cCCccCHHHHHHHHHhh
Q 003088 448 RFQ-PVLISEPSQEDAVRILLG----LREKYEA---H--HNCKFTLEAINAAVHLS 493 (849)
Q Consensus 448 Rf~-~i~~~~ps~~e~~~iL~~----~~~~~~~---~--~~~~i~~~~l~~~a~ls 493 (849)
|++ .+.|.+++.++..+|+.. +.++|.. . ..+.++++++.++++.+
T Consensus 302 Rld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~ 357 (412)
T PRK05342 302 RLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKA 357 (412)
T ss_pred CCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhC
Confidence 997 689999999999999983 4444432 2 34578999999998864
No 185
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.48 E-value=2.4e-13 Score=151.53 Aligned_cols=170 Identities=18% Similarity=0.311 Sum_probs=109.5
Q ss_pred hccccccHHHHHHHHHHHHHhhcCCCCCCC-CCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeecc------cccc
Q 003088 628 KKRVIGQDEAVAAISRAVKRSRVGLKDPNR-PTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMS------EYME 700 (849)
Q Consensus 628 ~~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~-p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~------~~~~ 700 (849)
.+.|+||+.+++.|..++...+.+.....+ ....+||+||+|+|||++|+.+|+.+...... .-.|. .+..
T Consensus 4 f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~--~~~Cg~C~~C~~~~~ 81 (394)
T PRK07940 4 WDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPD--EPGCGECRACRTVLA 81 (394)
T ss_pred hhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCC--CCCCCCCHHHHHHhc
Confidence 367999999999999999875432221112 12359999999999999999999988553211 01111 1111
Q ss_pred ccccc-cccCCCCCccccccCcchhHHHHhC----CCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeEE
Q 003088 701 RHTVS-KLIGSPPGYVGYEEGGLLTEAIRRR----PFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALI 775 (849)
Q Consensus 701 ~~~~~-~l~g~~~g~vg~~~~~~l~~~i~~~----~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~i 775 (849)
...+. .++......++.++...+.+.+... ++.|+||||+|.+++..+|.||+.||+ +..+++|
T Consensus 82 ~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEe-----------p~~~~~f 150 (394)
T PRK07940 82 GTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEE-----------PPPRTVW 150 (394)
T ss_pred CCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhc-----------CCCCCeE
Confidence 11111 1111111123333222333333333 357999999999999999999999998 2345666
Q ss_pred EEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHHHcccc
Q 003088 776 VMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQLP 847 (849)
Q Consensus 776 I~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~I~ 847 (849)
|++|+.... +.|.+++|| ..+.|.|++.+++.+.+
T Consensus 151 IL~a~~~~~------------------------------------llpTIrSRc-~~i~f~~~~~~~i~~~L 185 (394)
T PRK07940 151 LLCAPSPED------------------------------------VLPTIRSRC-RHVALRTPSVEAVAEVL 185 (394)
T ss_pred EEEECChHH------------------------------------ChHHHHhhC-eEEECCCCCHHHHHHHH
Confidence 666554211 679999999 89999999999887654
No 186
>PRK08727 hypothetical protein; Validated
Probab=99.48 E-value=2.7e-12 Score=134.17 Aligned_cols=188 Identities=14% Similarity=0.176 Sum_probs=121.0
Q ss_pred CCCCcc-ccHHHHHHHHHHHhcCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhccccccch
Q 003088 288 LIDPVI-GRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGE 366 (849)
Q Consensus 288 ~l~~ii-G~~~~i~~l~~~l~~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~~~~~~g~ 366 (849)
+|+.++ |..+.+..+.........+.++|+||+|||||+++++++..+... +.++..+++..
T Consensus 17 ~f~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~-------~~~~~y~~~~~---------- 79 (233)
T PRK08727 17 RFDSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQA-------GRSSAYLPLQA---------- 79 (233)
T ss_pred ChhhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc-------CCcEEEEeHHH----------
Confidence 344444 444555544444433444568999999999999999999988654 34444444433
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCCCeEEEEccChHHHHHHhhccHHHH
Q 003088 367 LEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALA 446 (849)
Q Consensus 367 ~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~~i~vI~at~~~~~~~~~~~d~al~ 446 (849)
+...+...++..... .+|+|||+|.+.... .....+.+++....+++ ..+|+|++... ..+-..++.|+
T Consensus 80 ~~~~~~~~~~~l~~~--dlLiIDDi~~l~~~~-------~~~~~lf~l~n~~~~~~-~~vI~ts~~~p-~~l~~~~~dL~ 148 (233)
T PRK08727 80 AAGRLRDALEALEGR--SLVALDGLESIAGQR-------EDEVALFDFHNRARAAG-ITLLYTARQMP-DGLALVLPDLR 148 (233)
T ss_pred hhhhHHHHHHHHhcC--CEEEEeCcccccCCh-------HHHHHHHHHHHHHHHcC-CeEEEECCCCh-hhhhhhhHHHH
Confidence 222344445544433 499999999984321 11233444444444444 44555555322 12334679999
Q ss_pred hcc---ccEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhcccccCcchhhHHHHHHHH
Q 003088 447 RRF---QPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEA 513 (849)
Q Consensus 447 ~Rf---~~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~~~r~~p~~ai~ll~~a 513 (849)
+|| ..+.+++|+.+++.+||+..+. ..++.++++++..++..+.|... .++.+++..
T Consensus 149 SRl~~~~~~~l~~~~~e~~~~iL~~~a~----~~~l~l~~e~~~~La~~~~rd~r------~~l~~L~~l 208 (233)
T PRK08727 149 SRLAQCIRIGLPVLDDVARAAVLRERAQ----RRGLALDEAAIDWLLTHGERELA------GLVALLDRL 208 (233)
T ss_pred HHHhcCceEEecCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHhCCCCHH------HHHHHHHHH
Confidence 996 3699999999999999998766 35899999999999998886543 555555543
No 187
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.47 E-value=1.9e-13 Score=158.10 Aligned_cols=172 Identities=20% Similarity=0.317 Sum_probs=131.4
Q ss_pred cccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccccccC
Q 003088 630 RVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIG 709 (849)
Q Consensus 630 ~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g 709 (849)
.++|.+..+..+...+...... ..++++.|++||||+++|++++....+.+.+|+.++|..+.+....+.+||
T Consensus 144 ~ii~~S~~~~~~~~~~~~~a~~-------~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lfg 216 (457)
T PRK11361 144 HILTNSPAMMDICKDTAKIALS-------QASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFG 216 (457)
T ss_pred ceecccHHHhHHHHHHHHHcCC-------CcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhcC
Confidence 4677777777776666554221 134999999999999999999998877788999999999887776778888
Q ss_pred CCCCc-cccccCcchhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCchhhhc
Q 003088 710 SPPGY-VGYEEGGLLTEAIRRRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAK 788 (849)
Q Consensus 710 ~~~g~-vg~~~~~~l~~~i~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~~ 788 (849)
...+. .|... .-.+.+..+.+|+||||||+.+++.+|..|+++|+++.+...++......+++||+|||.+...+..
T Consensus 217 ~~~~~~~~~~~--~~~g~~~~a~~gtl~ld~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~~~~~ 294 (457)
T PRK11361 217 HEKGAFTGAQT--LRQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVK 294 (457)
T ss_pred CCCCCCCCCCC--CCCCceEECCCCEEEEechhhCCHHHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHHHHHH
Confidence 75432 22211 1123455667899999999999999999999999998877655544444589999999998777665
Q ss_pred ccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccc-cEEEcCCCC
Q 003088 789 GRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRID-EVVVFRSLE 839 (849)
Q Consensus 789 ~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d-~~i~f~pl~ 839 (849)
.+. |+++|++|+. ..|..|||.
T Consensus 295 ~g~-----------------------------~~~~l~~~l~~~~i~~ppLr 317 (457)
T PRK11361 295 EGT-----------------------------FREDLFYRLNVIHLILPPLR 317 (457)
T ss_pred cCC-----------------------------chHHHHHHhccceecCCChh
Confidence 544 8899999996 566777776
No 188
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=4e-13 Score=151.22 Aligned_cols=190 Identities=21% Similarity=0.279 Sum_probs=132.5
Q ss_pred CCccccHHHHHHHHHHHhcCCC------CCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhc----
Q 003088 290 DPVIGRETEIQRIIQILCRRTK------NNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA---- 359 (849)
Q Consensus 290 ~~iiG~~~~i~~l~~~l~~~~~------~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~---- 359 (849)
++..|.++..+++++++.-++. .=++|+||||+|||++++.||+.+ +..++.+.++.+..
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~AL----------nRkFfRfSvGG~tDvAeI 480 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARAL----------NRKFFRFSVGGMTDVAEI 480 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHh----------CCceEEEeccccccHHhh
Confidence 4789999999999998855432 335999999999999999999999 67777777665532
Q ss_pred -c--ccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhc----------------
Q 003088 360 -G--AKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG---------------- 420 (849)
Q Consensus 360 -~--~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le---------------- 420 (849)
| .-|.|.+-.++-+.++.+.-.+| +++|||+|.+- .|.. -|-...|+.+|+
T Consensus 481 kGHRRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG-~g~q--------GDPasALLElLDPEQNanFlDHYLdVp~ 550 (906)
T KOG2004|consen 481 KGHRRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLG-SGHQ--------GDPASALLELLDPEQNANFLDHYLDVPV 550 (906)
T ss_pred cccceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhC-CCCC--------CChHHHHHHhcChhhccchhhhcccccc
Confidence 1 12455555555555555555544 88999999992 2211 122334444443
Q ss_pred -CCCeEEEEccChHHHHHHhhccHHHHhccccEEecCCCHHHHHHHHHHHHH-HHHhh-----cCCccCHHHHHHHHHhh
Q 003088 421 -RGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLRE-KYEAH-----HNCKFTLEAINAAVHLS 493 (849)
Q Consensus 421 -~~~i~vI~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL~~~~~-~~~~~-----~~~~i~~~~l~~~a~ls 493 (849)
=.++.||||.|..+ .+.++|+.|+..|+++-+..+|.++|.++.+- +.... ..+.++++++..+....
T Consensus 551 DLSkVLFicTAN~id-----tIP~pLlDRMEvIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI~~Y 625 (906)
T KOG2004|consen 551 DLSKVLFICTANVID-----TIPPPLLDRMEVIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALIERY 625 (906)
T ss_pred chhheEEEEeccccc-----cCChhhhhhhheeeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhcCccHHHHHHHHHHH
Confidence 14589999999887 88999999999999999999999999988543 22223 34678888877665543
Q ss_pred hcccccCcchh
Q 003088 494 ARYISDRYLPD 504 (849)
Q Consensus 494 ~~~~~~r~~p~ 504 (849)
-|-..-|.+..
T Consensus 626 crEaGVRnLqk 636 (906)
T KOG2004|consen 626 CREAGVRNLQK 636 (906)
T ss_pred HHHHhHHHHHH
Confidence 33333333333
No 189
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.47 E-value=1.9e-12 Score=148.88 Aligned_cols=187 Identities=14% Similarity=0.174 Sum_probs=120.1
Q ss_pred CCCCcc-ccHHHH--HHHHHHHhcC--CCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhcccc
Q 003088 288 LIDPVI-GRETEI--QRIIQILCRR--TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAK 362 (849)
Q Consensus 288 ~l~~ii-G~~~~i--~~l~~~l~~~--~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~~~~ 362 (849)
+|+.++ |..+.+ ..+..++... ..+.++|||++|+|||+|++++++++... ..+..++.++...+....
T Consensus 286 TFDnFvvG~sN~~A~aaa~avae~~~~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~-----~~g~~V~Yitaeef~~el- 359 (617)
T PRK14086 286 TFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARRL-----YPGTRVRYVSSEEFTNEF- 359 (617)
T ss_pred CHhhhcCCCccHHHHHHHHHHHhCccccCCcEEEECCCCCCHHHHHHHHHHHHHHh-----CCCCeEEEeeHHHHHHHH-
Confidence 355443 554442 2333343322 23558999999999999999999998542 114667777765544211
Q ss_pred ccchHHH-HHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCCCeEEEEccChHHHHHHhhc
Q 003088 363 ERGELEA-RVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEK 441 (849)
Q Consensus 363 ~~g~~e~-~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~~i~vI~at~~~~~~~~~~~ 441 (849)
...+.. .+..+.+.+++ ..+|+||||+.+.+.. .....+.+++....++++.++|.+..... .+-.+
T Consensus 360 -~~al~~~~~~~f~~~y~~--~DLLlIDDIq~l~gke-------~tqeeLF~l~N~l~e~gk~IIITSd~~P~--eL~~l 427 (617)
T PRK14086 360 -INSIRDGKGDSFRRRYRE--MDILLVDDIQFLEDKE-------STQEEFFHTFNTLHNANKQIVLSSDRPPK--QLVTL 427 (617)
T ss_pred -HHHHHhccHHHHHHHhhc--CCEEEEehhccccCCH-------HHHHHHHHHHHHHHhcCCCEEEecCCChH--hhhhc
Confidence 011100 11112122222 3599999999995321 12456777777777776655554444332 23357
Q ss_pred cHHHHhccc---cEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhcc
Q 003088 442 DKALARRFQ---PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496 (849)
Q Consensus 442 d~al~~Rf~---~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~ 496 (849)
++.|.+||. .+.|..|+.+.|.+||+..+. ..++.++++++++++....+-
T Consensus 428 ~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~----~r~l~l~~eVi~yLa~r~~rn 481 (617)
T PRK14086 428 EDRLRNRFEWGLITDVQPPELETRIAILRKKAV----QEQLNAPPEVLEFIASRISRN 481 (617)
T ss_pred cHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHH----hcCCCCCHHHHHHHHHhccCC
Confidence 899999996 589999999999999998776 568999999999988866553
No 190
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.46 E-value=2.4e-13 Score=157.54 Aligned_cols=180 Identities=23% Similarity=0.338 Sum_probs=138.2
Q ss_pred cccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccccccC
Q 003088 630 RVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIG 709 (849)
Q Consensus 630 ~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g 709 (849)
.++|.+..+..+...+..... . ..++++.|++||||+++|++++....+...+|+.+||..+.+....+.+||
T Consensus 135 ~lig~s~~~~~v~~~i~~~a~-~------~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~~lfg 207 (463)
T TIGR01818 135 ELIGEAPAMQEVFRAIGRLSR-S------DITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFG 207 (463)
T ss_pred ceeecCHHHHHHHHHHHHHhC-c------CCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHhcC
Confidence 367777777777776655321 1 124999999999999999999999877788999999999877666777888
Q ss_pred CCCC-ccccccCcchhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCchhhhc
Q 003088 710 SPPG-YVGYEEGGLLTEAIRRRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAK 788 (849)
Q Consensus 710 ~~~g-~vg~~~~~~l~~~i~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~~ 788 (849)
...| +.|... ...+.+..+.+|+||||||+.+++.+|..|+++|+++.+...++......+++||++|+.+.+.+..
T Consensus 208 ~~~~~~~~~~~--~~~g~~~~a~~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~ 285 (463)
T TIGR01818 208 HEKGAFTGANT--RRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVR 285 (463)
T ss_pred CCCCCCCCccc--CCCCcEEECCCCeEEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHHHHHH
Confidence 6543 223221 1123345667899999999999999999999999999988766655555689999999998776655
Q ss_pred ccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccc-cEEEcCCCC--HHHHcccc
Q 003088 789 GRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRID-EVVVFRSLE--KAQVCQLP 847 (849)
Q Consensus 789 ~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d-~~i~f~pl~--~~~~~~I~ 847 (849)
.+. |+++|++|+. ..|..|||. .+|+..++
T Consensus 286 ~~~-----------------------------f~~~L~~rl~~~~i~lPpLr~R~~Di~~l~ 318 (463)
T TIGR01818 286 QGK-----------------------------FREDLFHRLNVIRIHLPPLRERREDIPRLA 318 (463)
T ss_pred cCC-----------------------------cHHHHHHHhCcceecCCCcccchhhHHHHH
Confidence 543 8899999997 488899998 56666554
No 191
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.46 E-value=2.3e-12 Score=148.04 Aligned_cols=188 Identities=16% Similarity=0.234 Sum_probs=122.7
Q ss_pred CCCCc-cccHHH--HHHHHHHHhcC--CCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhcccc
Q 003088 288 LIDPV-IGRETE--IQRIIQILCRR--TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAK 362 (849)
Q Consensus 288 ~l~~i-iG~~~~--i~~l~~~l~~~--~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~~~~ 362 (849)
+|+.+ +|..+. ...+..+.... ..++++|+||+|+|||++++++++++.... | +..++.++...+...
T Consensus 120 tfd~fv~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~-~----~~~v~yi~~~~~~~~-- 192 (450)
T PRK00149 120 TFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKN-P----NAKVVYVTSEKFTND-- 192 (450)
T ss_pred cccccccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhC-C----CCeEEEEEHHHHHHH--
Confidence 46664 455443 33344444322 235689999999999999999999986531 1 456667666554311
Q ss_pred ccchHHH-HHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCCCeEEEEccChHHHHHHhhc
Q 003088 363 ERGELEA-RVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEK 441 (849)
Q Consensus 363 ~~g~~e~-~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~~i~vI~at~~~~~~~~~~~ 441 (849)
....+.. ....+.+..+ ...+|+|||+|.+.+.. ....++..++....+++..++|+++..+. .+-.+
T Consensus 193 ~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~~~-------~~~~~l~~~~n~l~~~~~~iiits~~~p~--~l~~l 261 (450)
T PRK00149 193 FVNALRNNTMEEFKEKYR--SVDVLLIDDIQFLAGKE-------RTQEEFFHTFNALHEAGKQIVLTSDRPPK--ELPGL 261 (450)
T ss_pred HHHHHHcCcHHHHHHHHh--cCCEEEEehhhhhcCCH-------HHHHHHHHHHHHHHHCCCcEEEECCCCHH--HHHHH
Confidence 1111100 1112222333 24599999999994321 12345667777777777767776666543 12237
Q ss_pred cHHHHhccc---cEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhccc
Q 003088 442 DKALARRFQ---PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497 (849)
Q Consensus 442 d~al~~Rf~---~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~ 497 (849)
++.+.+||. .+.|.+|+.+++.+||+..++ ..++.+++++++.++..+.+-+
T Consensus 262 ~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~----~~~~~l~~e~l~~ia~~~~~~~ 316 (450)
T PRK00149 262 EERLRSRFEWGLTVDIEPPDLETRIAILKKKAE----EEGIDLPDEVLEFIAKNITSNV 316 (450)
T ss_pred HHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHcCcCCCH
Confidence 799999995 699999999999999998877 4588999999999988776643
No 192
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.46 E-value=2.9e-13 Score=151.21 Aligned_cols=159 Identities=26% Similarity=0.427 Sum_probs=107.9
Q ss_pred ccccccHHHHHHHHHHHHHh--------hcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeecccccc
Q 003088 629 KRVIGQDEAVAAISRAVKRS--------RVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYME 700 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~~--------~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~ 700 (849)
+.|.|.+..++.|...+... ..|...| .++||+||||||||++|+++|+.+ +.+|+.+.++++..
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~p----kgvLL~GppGTGKT~LAkalA~~l---~~~fi~i~~s~l~~ 217 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPP----RGVLLYGPPGTGKTMLAKAVAHHT---TATFIRVVGSEFVQ 217 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCC----ceEEEECCCCCCHHHHHHHHHHhc---CCCEEEEehHHHHH
Confidence 45889999998888877532 2344333 349999999999999999999985 56788887766533
Q ss_pred ccccccccCCCCCccccccC--cchhHHHHhCCCeEEEEeCccccC-----------HHHHHHHHHHhhcCeeecCCCce
Q 003088 701 RHTVSKLIGSPPGYVGYEEG--GLLTEAIRRRPFTLLLLDEIEKAH-----------PDIFNILLQVFEDGHLTDSHGRR 767 (849)
Q Consensus 701 ~~~~~~l~g~~~g~vg~~~~--~~l~~~i~~~~~~vl~lDEid~l~-----------~~~~~~Ll~~le~g~~~~~~g~~ 767 (849)
. |+|..+. ..+....+...++||||||+|.+. ..++..+.+++..-.-..
T Consensus 218 k------------~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~----- 280 (398)
T PTZ00454 218 K------------YLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFD----- 280 (398)
T ss_pred H------------hcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccC-----
Confidence 2 3343321 123333445567999999999762 334444444443210000
Q ss_pred eecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhh--ccccEEEcCCCCHHHHcc
Q 003088 768 VSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLN--RIDEVVVFRSLEKAQVCQ 845 (849)
Q Consensus 768 ~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~--R~d~~i~f~pl~~~~~~~ 845 (849)
...+++||++||.... ++|+++. |||..|.|++++.++..+
T Consensus 281 -~~~~v~VI~aTN~~d~------------------------------------LDpAllR~GRfd~~I~~~~P~~~~R~~ 323 (398)
T PTZ00454 281 -QTTNVKVIMATNRADT------------------------------------LDPALLRPGRLDRKIEFPLPDRRQKRL 323 (398)
T ss_pred -CCCCEEEEEecCCchh------------------------------------CCHHHcCCCcccEEEEeCCcCHHHHHH
Confidence 1236889999996321 7888885 999999999999999887
Q ss_pred ccC
Q 003088 846 LPL 848 (849)
Q Consensus 846 I~~ 848 (849)
|++
T Consensus 324 Il~ 326 (398)
T PTZ00454 324 IFQ 326 (398)
T ss_pred HHH
Confidence 764
No 193
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.45 E-value=1.6e-13 Score=159.93 Aligned_cols=163 Identities=23% Similarity=0.325 Sum_probs=107.0
Q ss_pred hccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCC----CceeEe-ecccccccc
Q 003088 628 KKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSE----SSMLRL-DMSEYMERH 702 (849)
Q Consensus 628 ~~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~----~~~i~i-~~~~~~~~~ 702 (849)
+++|+||+.+++.|...+...+. ...+||+||+|||||++|+.+|+.+.+.. .++-.+ .|..+....
T Consensus 15 f~divGQe~vv~~L~~~l~~~rl--------~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~ 86 (647)
T PRK07994 15 FAEVVGQEHVLTALANALDLGRL--------HHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGR 86 (647)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCC--------CeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCC
Confidence 36699999999999888876431 12379999999999999999999985531 111111 111111111
Q ss_pred ccccc-cCCCCCccccccCcchhHHHHh----CCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEE
Q 003088 703 TVSKL-IGSPPGYVGYEEGGLLTEAIRR----RPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVM 777 (849)
Q Consensus 703 ~~~~l-~g~~~g~vg~~~~~~l~~~i~~----~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ 777 (849)
....+ +. +....+.+....+.+.+.. ..+.|+||||+|+|+...+|.||+.||+ ...+++||+
T Consensus 87 ~~D~ieid-aas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEE-----------Pp~~v~FIL 154 (647)
T PRK07994 87 FVDLIEID-AASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE-----------PPEHVKFLL 154 (647)
T ss_pred CCCceeec-ccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHc-----------CCCCeEEEE
Confidence 11100 11 0111222222223333322 3467999999999999999999999998 345788888
Q ss_pred ecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHHHcccc
Q 003088 778 TSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQLP 847 (849)
Q Consensus 778 tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~I~ 847 (849)
+|+.... +.+.+++|| ..+.|.|++.+++...+
T Consensus 155 ~Tt~~~k------------------------------------Ll~TI~SRC-~~~~f~~Ls~~ei~~~L 187 (647)
T PRK07994 155 ATTDPQK------------------------------------LPVTILSRC-LQFHLKALDVEQIRQQL 187 (647)
T ss_pred ecCCccc------------------------------------cchHHHhhh-eEeeCCCCCHHHHHHHH
Confidence 8775221 668899998 89999999998886544
No 194
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.45 E-value=6.8e-12 Score=150.14 Aligned_cols=178 Identities=19% Similarity=0.246 Sum_probs=124.4
Q ss_pred CccccHHHHHHHHHHHhc---------CCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhc--
Q 003088 291 PVIGRETEIQRIIQILCR---------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA-- 359 (849)
Q Consensus 291 ~iiG~~~~i~~l~~~l~~---------~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~-- 359 (849)
.++||++.++.+.+.+.. +...++||+||||||||.+|+.+|+.+ +.+++.+|++.+..
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l----------~~~~i~id~se~~~~~ 528 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL----------GIELLRFDMSEYMERH 528 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh----------CCCcEEeechhhcccc
Confidence 689999999999998753 123468999999999999999999988 34555666554321
Q ss_pred ------cc--cccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCC---------
Q 003088 360 ------GA--KERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG--------- 422 (849)
Q Consensus 360 ------~~--~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~--------- 422 (849)
|. .+.|.- .-..+.+.++..+.+||||||+|.+ ..++++.|+++++.|
T Consensus 529 ~~~~LiG~~~gyvg~~--~~g~L~~~v~~~p~sVlllDEieka-------------~~~v~~~LLq~ld~G~ltd~~g~~ 593 (758)
T PRK11034 529 TVSRLIGAPPGYVGFD--QGGLLTDAVIKHPHAVLLLDEIEKA-------------HPDVFNLLLQVMDNGTLTDNNGRK 593 (758)
T ss_pred cHHHHcCCCCCccccc--ccchHHHHHHhCCCcEEEeccHhhh-------------hHHHHHHHHHHHhcCeeecCCCce
Confidence 11 122210 0112333445566789999999999 467899999999854
Q ss_pred ----CeEEEEccChHH--H-H-----------------HHhhccHHHHhccc-cEEecCCCHHHHHHHHHHHHHHHHh--
Q 003088 423 ----ELQCIASTTQDE--H-R-----------------TQFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEA-- 475 (849)
Q Consensus 423 ----~i~vI~at~~~~--~-~-----------------~~~~~d~al~~Rf~-~i~~~~ps~~e~~~iL~~~~~~~~~-- 475 (849)
+.++|+|||... . . -.....|.|..|++ .|.|++++.++..+|+...+.++..
T Consensus 594 vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l 673 (758)
T PRK11034 594 ADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQL 673 (758)
T ss_pred ecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 345888888320 0 0 00134589999997 7999999999999999876554322
Q ss_pred ---hcCCccCHHHHHHHHHhh
Q 003088 476 ---HHNCKFTLEAINAAVHLS 493 (849)
Q Consensus 476 ---~~~~~i~~~~l~~~a~ls 493 (849)
...+.+++++++.++...
T Consensus 674 ~~~~i~l~~~~~~~~~l~~~~ 694 (758)
T PRK11034 674 DQKGVSLEVSQEARDWLAEKG 694 (758)
T ss_pred HHCCCCceECHHHHHHHHHhC
Confidence 234678999999888644
No 195
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.45 E-value=5.5e-13 Score=142.56 Aligned_cols=136 Identities=13% Similarity=0.152 Sum_probs=93.6
Q ss_pred ccceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccccccCCCCCccccccCc---chhHHHH----hCCC
Q 003088 660 AAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGG---LLTEAIR----RRPF 732 (849)
Q Consensus 660 ~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~vg~~~~~---~l~~~i~----~~~~ 732 (849)
..++|+||||||||.+|+++++.+ +.+++.++++++.. +|+|+.+.. .+..+.. +...
T Consensus 149 lgllL~GPPGcGKTllAraiA~el---g~~~i~vsa~eL~s------------k~vGEsEk~IR~~F~~A~~~a~~~~aP 213 (413)
T PLN00020 149 LILGIWGGKGQGKSFQCELVFKKM---GIEPIVMSAGELES------------ENAGEPGKLIRQRYREAADIIKKKGKM 213 (413)
T ss_pred eEEEeeCCCCCCHHHHHHHHHHHc---CCCeEEEEHHHhhc------------CcCCcHHHHHHHHHHHHHHHhhccCCC
Confidence 349999999999999999999996 67899999998765 367776632 2222321 2346
Q ss_pred eEEEEeCccccCHH------------HHHHHHHHhhcCeeecCCC---ceeecCCeEEEEecCCCchhhhcccCCccccc
Q 003088 733 TLLLLDEIEKAHPD------------IFNILLQVFEDGHLTDSHG---RRVSFKNALIVMTSNVGSTTIAKGRHGSIGFL 797 (849)
Q Consensus 733 ~vl~lDEid~l~~~------------~~~~Ll~~le~g~~~~~~g---~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~ 797 (849)
|||||||||.+.+. +...|+..+|+-......| ..-....+.||+|+|....
T Consensus 214 cVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~------------- 280 (413)
T PLN00020 214 SCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFST------------- 280 (413)
T ss_pred eEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCccc-------------
Confidence 99999999987442 2367888887521000000 0112347889999997532
Q ss_pred cccCCcccHHhHHHHHHHHHHhhCChHHhh--ccccEEEcCCCCHHHHccccC
Q 003088 798 LEDNESTSYAGMKTLVVEELKAYFRPELLN--RIDEVVVFRSLEKAQVCQLPL 848 (849)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~l~~~~~pell~--R~d~~i~f~pl~~~~~~~I~~ 848 (849)
++|+|+. |||..+ ..++.++..+|++
T Consensus 281 -----------------------LDpALlRpGRfDk~i--~lPd~e~R~eIL~ 308 (413)
T PLN00020 281 -----------------------LYAPLIRDGRMEKFY--WAPTREDRIGVVH 308 (413)
T ss_pred -----------------------CCHhHcCCCCCCcee--CCCCHHHHHHHHH
Confidence 7899997 999865 3577888877764
No 196
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.45 E-value=4.5e-12 Score=144.33 Aligned_cols=187 Identities=19% Similarity=0.302 Sum_probs=120.5
Q ss_pred CCCCcc-ccHHHH--HHHHHHHhcC-CCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhccc--
Q 003088 288 LIDPVI-GRETEI--QRIIQILCRR-TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGA-- 361 (849)
Q Consensus 288 ~l~~ii-G~~~~i--~~l~~~l~~~-~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~~~-- 361 (849)
+|+.++ |..+.. ..+.++.... ..++++||||+|+|||+|++++++.+.... | +..++.++...+....
T Consensus 103 tFdnFv~g~~n~~a~~~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~-~----~~~v~yi~~~~f~~~~~~ 177 (440)
T PRK14088 103 TFENFVVGPGNSFAYHAALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNE-P----DLRVMYITSEKFLNDLVD 177 (440)
T ss_pred cccccccCCchHHHHHHHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHhC-C----CCeEEEEEHHHHHHHHHH
Confidence 455554 655443 2333443322 246789999999999999999999985421 1 4566666655543111
Q ss_pred -cccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCCCeEEEEccChHHHHHHhh
Q 003088 362 -KERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440 (849)
Q Consensus 362 -~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~~i~vI~at~~~~~~~~~~ 440 (849)
-..+. +..+.+... ....+|+|||++.+.+.. ....++..++....+.+..++|++...+. .+-.
T Consensus 178 ~~~~~~----~~~f~~~~~-~~~dvLlIDDi~~l~~~~-------~~q~elf~~~n~l~~~~k~iIitsd~~p~--~l~~ 243 (440)
T PRK14088 178 SMKEGK----LNEFREKYR-KKVDVLLIDDVQFLIGKT-------GVQTELFHTFNELHDSGKQIVICSDREPQ--KLSE 243 (440)
T ss_pred HHhccc----HHHHHHHHH-hcCCEEEEechhhhcCcH-------HHHHHHHHHHHHHHHcCCeEEEECCCCHH--HHHH
Confidence 00111 112222222 235699999999985321 11345666666666777666665544443 2224
Q ss_pred ccHHHHhccc---cEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhccc
Q 003088 441 KDKALARRFQ---PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497 (849)
Q Consensus 441 ~d~al~~Rf~---~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~ 497 (849)
+.+.+.+||. .+.|++|+.+.+.+||+..++ ..++.++++++..++....+-+
T Consensus 244 l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~----~~~~~l~~ev~~~Ia~~~~~~~ 299 (440)
T PRK14088 244 FQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLE----IEHGELPEEVLNFVAENVDDNL 299 (440)
T ss_pred HHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHH----hcCCCCCHHHHHHHHhccccCH
Confidence 6789999997 699999999999999988776 5688999999999988776543
No 197
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.45 E-value=1.8e-12 Score=142.75 Aligned_cols=201 Identities=16% Similarity=0.155 Sum_probs=135.7
Q ss_pred HhhcCCCCccccHHHHHHHHHHHhcCCCCC-CeEeCCCCChHHHHHHHHHHHhhhCCC----Ccccc----CCe------
Q 003088 284 ASEELIDPVIGRETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEV----PVFLL----SKR------ 348 (849)
Q Consensus 284 ~~~~~l~~iiG~~~~i~~l~~~l~~~~~~n-iLL~GppGtGKT~la~~la~~l~~~~~----p~~~~----~~~------ 348 (849)
..|..++.++|+++.+..+...+...+.+| +||+||+|+|||++|+.+|+.+.+... |.... .|.
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i~ 96 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQIA 96 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHHH
Confidence 467788999999999999999998887776 799999999999999999999976321 21110 111
Q ss_pred ------EEEeehhhhhcccc-ccchHHHHHHHHHHHHH----hcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhh
Q 003088 349 ------IMSLDMGLLMAGAK-ERGELEARVTTLISEIQ----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKP 417 (849)
Q Consensus 349 ------~~~l~~~~~~~~~~-~~g~~e~~l~~l~~~~~----~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~ 417 (849)
++.+....-..+.+ ...-..+.++.+.+.+. .++..|+||||+|.| ...++|.|+.
T Consensus 97 ~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l-------------~~~aanaLLk 163 (351)
T PRK09112 97 QGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDM-------------NRNAANAILK 163 (351)
T ss_pred cCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhc-------------CHHHHHHHHH
Confidence 11111000000000 01111233444444333 245679999999999 4567888999
Q ss_pred hhcCC--CeEEEEccChHHHHHHhhccHHHHhccccEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhc
Q 003088 418 SLGRG--ELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495 (849)
Q Consensus 418 ~le~~--~i~vI~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~ 495 (849)
.+|++ +..+|..|+... .+.+.+++||+.+.|++|+.++..++|..... .. .++++++..++.++++
T Consensus 164 ~LEEpp~~~~fiLit~~~~-----~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~----~~--~~~~~~~~~i~~~s~G 232 (351)
T PRK09112 164 TLEEPPARALFILISHSSG-----RLLPTIRSRCQPISLKPLDDDELKKALSHLGS----SQ--GSDGEITEALLQRSKG 232 (351)
T ss_pred HHhcCCCCceEEEEECChh-----hccHHHHhhccEEEecCCCHHHHHHHHHHhhc----cc--CCCHHHHHHHHHHcCC
Confidence 99863 345555555544 56799999999999999999999999976321 11 2778888888887775
Q ss_pred ccccCcchhhHHHHHHHHh
Q 003088 496 YISDRYLPDKAIDLVDEAG 514 (849)
Q Consensus 496 ~~~~r~~p~~ai~ll~~a~ 514 (849)
.|..|+.++....
T Consensus 233 ------~pr~Al~ll~~~~ 245 (351)
T PRK09112 233 ------SVRKALLLLNYGG 245 (351)
T ss_pred ------CHHHHHHHHhcCc
Confidence 4567777776543
No 198
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.44 E-value=5.9e-12 Score=131.38 Aligned_cols=188 Identities=15% Similarity=0.201 Sum_probs=120.9
Q ss_pred CCCcc--ccHHHHHHHHHHHhcCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhccccccch
Q 003088 289 IDPVI--GRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGE 366 (849)
Q Consensus 289 l~~ii--G~~~~i~~l~~~l~~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~~~~~~g~ 366 (849)
|++++ +.+..+..+..++......+++|+||+|||||++|+++++..... +..++.+++..+...
T Consensus 14 ~~~~~~~~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~-------~~~~~~i~~~~~~~~------ 80 (226)
T TIGR03420 14 FDNFYAGGNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEER-------GKSAIYLPLAELAQA------ 80 (226)
T ss_pred hcCcCcCCcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhc-------CCcEEEEeHHHHHHh------
Confidence 44444 355677778887766777899999999999999999999987543 345666776655411
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCCCeEEEEccChHHHHHHhhcc-HHH
Q 003088 367 LEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKD-KAL 445 (849)
Q Consensus 367 ~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~~i~vI~at~~~~~~~~~~~d-~al 445 (849)
...++..+.. ..+|||||+|.+.... +....+...+....+.+. .+|.+++... ..+... +.|
T Consensus 81 ----~~~~~~~~~~--~~lLvIDdi~~l~~~~-------~~~~~L~~~l~~~~~~~~-~iIits~~~~--~~~~~~~~~L 144 (226)
T TIGR03420 81 ----DPEVLEGLEQ--ADLVCLDDVEAIAGQP-------EWQEALFHLYNRVREAGG-RLLIAGRAAP--AQLPLRLPDL 144 (226)
T ss_pred ----HHHHHhhccc--CCEEEEeChhhhcCCh-------HHHHHHHHHHHHHHHcCC-eEEEECCCCh--HHCCcccHHH
Confidence 1233333332 3499999999993210 002233344433333444 4555554322 112223 788
Q ss_pred Hhccc---cEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhcccccCcchhhHHHHHHHHhh
Q 003088 446 ARRFQ---PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGS 515 (849)
Q Consensus 446 ~~Rf~---~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~~~r~~p~~ai~ll~~a~~ 515 (849)
.+||. .|.+++|+.+++..+++.... ..++.++++++..++..+.+ .+..+..+++.+..
T Consensus 145 ~~r~~~~~~i~l~~l~~~e~~~~l~~~~~----~~~~~~~~~~l~~L~~~~~g------n~r~L~~~l~~~~~ 207 (226)
T TIGR03420 145 RTRLAWGLVFQLPPLSDEEKIAALQSRAA----RRGLQLPDEVADYLLRHGSR------DMGSLMALLDALDR 207 (226)
T ss_pred HHHHhcCeeEecCCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHhccC------CHHHHHHHHHHHHH
Confidence 88884 699999999999999976654 45788999999888775544 23466666666543
No 199
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.44 E-value=2.7e-12 Score=145.80 Aligned_cols=187 Identities=16% Similarity=0.231 Sum_probs=119.5
Q ss_pred CCCC-ccccHHHH--HHHHHHHhcC--CCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhcccc
Q 003088 288 LIDP-VIGRETEI--QRIIQILCRR--TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAK 362 (849)
Q Consensus 288 ~l~~-iiG~~~~i--~~l~~~l~~~--~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~~~~ 362 (849)
+|+. ++|.++.. ..+..+.... ..++++|+||+|+|||++++++++++.... .+..++.++...+...
T Consensus 108 tfd~fi~g~~n~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~-----~~~~v~yi~~~~~~~~-- 180 (405)
T TIGR00362 108 TFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNEILENN-----PNAKVVYVSSEKFTND-- 180 (405)
T ss_pred cccccccCCcHHHHHHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHHHHHHhC-----CCCcEEEEEHHHHHHH--
Confidence 4666 45666543 2233333322 235679999999999999999999986531 1456666665544311
Q ss_pred ccchHH-HHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCCCeEEEEccChHHHHHHhhc
Q 003088 363 ERGELE-ARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEK 441 (849)
Q Consensus 363 ~~g~~e-~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~~i~vI~at~~~~~~~~~~~ 441 (849)
....+. ..+..+.+.++. ..+|+|||+|.+.+.. .....+.+++....+++..++|+++..+. .+-.+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~--~dlLiiDDi~~l~~~~-------~~~~~l~~~~n~~~~~~~~iiits~~~p~--~l~~l 249 (405)
T TIGR00362 181 FVNALRNNKMEEFKEKYRS--VDLLLIDDIQFLAGKE-------RTQEEFFHTFNALHENGKQIVLTSDRPPK--ELPGL 249 (405)
T ss_pred HHHHHHcCCHHHHHHHHHh--CCEEEEehhhhhcCCH-------HHHHHHHHHHHHHHHCCCCEEEecCCCHH--HHhhh
Confidence 000000 011122222322 3599999999984321 11334566666666777666666555443 22346
Q ss_pred cHHHHhccc---cEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhcc
Q 003088 442 DKALARRFQ---PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496 (849)
Q Consensus 442 d~al~~Rf~---~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~ 496 (849)
++.+.+||. .+.|++|+.+++..||+..++ ..++.++++++..++....+-
T Consensus 250 ~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~----~~~~~l~~e~l~~ia~~~~~~ 303 (405)
T TIGR00362 250 EERLRSRFEWGLVVDIEPPDLETRLAILQKKAE----EEGLELPDEVLEFIAKNIRSN 303 (405)
T ss_pred hhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHhcCCC
Confidence 789999995 599999999999999998877 468899999999988776653
No 200
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.44 E-value=1.1e-12 Score=152.92 Aligned_cols=223 Identities=12% Similarity=0.089 Sum_probs=144.3
Q ss_pred hhhhHHHHhhcCCCCccccHHHHHHHHHHHhcCCCC-----CCeEeCCCCChHHHHHHHHHHHhhhCCCCccc--cCCeE
Q 003088 277 CVDLTARASEELIDPVIGRETEIQRIIQILCRRTKN-----NPILLGESGVGKTAIAEGLAIRIVQAEVPVFL--LSKRI 349 (849)
Q Consensus 277 ~~~l~~~~~~~~l~~iiG~~~~i~~l~~~l~~~~~~-----niLL~GppGtGKT~la~~la~~l~~~~~p~~~--~~~~~ 349 (849)
..+|+++|+|..+++++|+++.++.+..++...... -++|+||||+|||++++.+|+.+... +.... .++..
T Consensus 71 ~~pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~-~~Ew~npv~~~~ 149 (637)
T TIGR00602 71 NEPWVEKYKPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELGIQ-VQEWSNPTLPDF 149 (637)
T ss_pred cCchHHHhCCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhH-HHHHhhhhhhcc
Confidence 357999999999999999999999999888654322 28999999999999999999987421 00000 00000
Q ss_pred EEee---hhhhhccccccchHHHHHHHHHHHHH----------hcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHh
Q 003088 350 MSLD---MGLLMAGAKERGELEARVTTLISEIQ----------KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLK 416 (849)
Q Consensus 350 ~~l~---~~~~~~~~~~~g~~e~~l~~l~~~~~----------~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~ 416 (849)
..-+ ...+...-.......+.++.++..+. ..+..||||||++.++.. ....++++|+
T Consensus 150 ~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r---------~~~~lq~lLr 220 (637)
T TIGR00602 150 QKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR---------DTRALHEILR 220 (637)
T ss_pred cccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh---------hHHHHHHHHH
Confidence 0000 00000000000111223344444443 134679999999988632 1335667777
Q ss_pred -hhhcCCCeEEEEccChHHH------HHHhh----ccHHHHh--ccccEEecCCCHHHHHHHHHHHHHHHHhh--cCCcc
Q 003088 417 -PSLGRGELQCIASTTQDEH------RTQFE----KDKALAR--RFQPVLISEPSQEDAVRILLGLREKYEAH--HNCKF 481 (849)
Q Consensus 417 -~~le~~~i~vI~at~~~~~------~~~~~----~d~al~~--Rf~~i~~~~ps~~e~~~iL~~~~~~~~~~--~~~~i 481 (849)
.+.+.+.+.+|+++|...+ +..+. +.+++++ |+..|.|++.+..+..+.|..++...... ....+
T Consensus 221 ~~~~e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~ 300 (637)
T TIGR00602 221 WKYVSIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKV 300 (637)
T ss_pred HHhhcCCCceEEEEecCCccccccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhhhhcccccccc
Confidence 6778888888888875432 11122 4578887 66679999999999999999888742211 12223
Q ss_pred -CHHHHHHHHHhhhcccccCcchhhHHHHHHHHhh
Q 003088 482 -TLEAINAAVHLSARYISDRYLPDKAIDLVDEAGS 515 (849)
Q Consensus 482 -~~~~l~~~a~ls~~~~~~r~~p~~ai~ll~~a~~ 515 (849)
+++++..++..+.+.+. .||..|+-+|.
T Consensus 301 p~~~~l~~I~~~s~GDiR------sAIn~LQf~~~ 329 (637)
T TIGR00602 301 PKKTSVELLCQGCSGDIR------SAINSLQFSSS 329 (637)
T ss_pred CCHHHHHHHHHhCCChHH------HHHHHHHHHHh
Confidence 56888898888888764 88999988754
No 201
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.44 E-value=3.8e-12 Score=142.86 Aligned_cols=210 Identities=21% Similarity=0.269 Sum_probs=137.3
Q ss_pred CCccccHHHHHHHHHHHhc----CCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhh-------
Q 003088 290 DPVIGRETEIQRIIQILCR----RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM------- 358 (849)
Q Consensus 290 ~~iiG~~~~i~~l~~~l~~----~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~------- 358 (849)
+.++||+++++.+...+.. ....+++|+||||||||++++.+++.+..... ..-....++.+++....
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~-~~~~~~~~v~in~~~~~~~~~~~~ 93 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAE-DRDVRVVTVYVNCQILDTLYQVLV 93 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhh-ccCCceEEEEEECCCCCCHHHHHH
Confidence 4689999999999888753 45578999999999999999999998753110 00001344444432211
Q ss_pred ------c--cc--cccc-hHHHHHHHHHHHHHh-cCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhh-----hcC
Q 003088 359 ------A--GA--KERG-ELEARVTTLISEIQK-SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPS-----LGR 421 (849)
Q Consensus 359 ------~--~~--~~~g-~~e~~l~~l~~~~~~-~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~-----le~ 421 (849)
. +. ...+ ...+.+..+++.+.. ..+.||+|||+|.+... ..++...|... +..
T Consensus 94 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~----------~~~~L~~l~~~~~~~~~~~ 163 (365)
T TIGR02928 94 ELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGD----------DDDLLYQLSRARSNGDLDN 163 (365)
T ss_pred HHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccC----------CcHHHHhHhccccccCCCC
Confidence 0 11 0111 234445555555543 44689999999999621 12233333333 123
Q ss_pred CCeEEEEccChHHHHHHhhccHHHHhccc--cEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhccccc
Q 003088 422 GELQCIASTTQDEHRTQFEKDKALARRFQ--PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISD 499 (849)
Q Consensus 422 ~~i~vI~at~~~~~~~~~~~d~al~~Rf~--~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~~~ 499 (849)
..+.+|+++|...+.. .+++.+.+||. .|.|++++.++..+||+...+.. .....++++++..++.++.+.-
T Consensus 164 ~~v~lI~i~n~~~~~~--~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~--~~~~~~~~~~l~~i~~~~~~~~-- 237 (365)
T TIGR02928 164 AKVGVIGISNDLKFRE--NLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKA--FYDGVLDDGVIPLCAALAAQEH-- 237 (365)
T ss_pred CeEEEEEEECCcchHh--hcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhh--ccCCCCChhHHHHHHHHHHHhc--
Confidence 5688899998776433 57889999995 59999999999999998876521 1234588888888777665322
Q ss_pred CcchhhHHHHHHHHhhHH
Q 003088 500 RYLPDKAIDLVDEAGSRA 517 (849)
Q Consensus 500 r~~p~~ai~ll~~a~~~~ 517 (849)
..+..+++++..|+..+
T Consensus 238 -Gd~R~al~~l~~a~~~a 254 (365)
T TIGR02928 238 -GDARKAIDLLRVAGEIA 254 (365)
T ss_pred -CCHHHHHHHHHHHHHHH
Confidence 23568888888887554
No 202
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.43 E-value=1.3e-12 Score=157.47 Aligned_cols=177 Identities=17% Similarity=0.248 Sum_probs=122.6
Q ss_pred CC-CccccHHHHHHHHHHHhc------CCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhh---
Q 003088 289 ID-PVIGRETEIQRIIQILCR------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM--- 358 (849)
Q Consensus 289 l~-~iiG~~~~i~~l~~~l~~------~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~--- 358 (849)
|+ +++|.++..+++++++.. .....++|+||||+|||++++.+|+.+ +..++.++++...
T Consensus 320 l~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l----------~~~~~~i~~~~~~d~~ 389 (784)
T PRK10787 320 LDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT----------GRKYVRMALGGVRDEA 389 (784)
T ss_pred hhhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEEcCCCCCHH
Confidence 55 599999999999987753 244578999999999999999999988 4445555444321
Q ss_pred --cc--ccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcC-------------
Q 003088 359 --AG--AKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR------------- 421 (849)
Q Consensus 359 --~~--~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~------------- 421 (849)
.+ ..+.|....++...+..+... +.|+||||+|.+.+.. ..+.++.|..+++.
T Consensus 390 ~i~g~~~~~~g~~~G~~~~~l~~~~~~-~~villDEidk~~~~~---------~g~~~~aLlevld~~~~~~~~d~~~~~ 459 (784)
T PRK10787 390 EIRGHRRTYIGSMPGKLIQKMAKVGVK-NPLFLLDEIDKMSSDM---------RGDPASALLEVLDPEQNVAFSDHYLEV 459 (784)
T ss_pred HhccchhccCCCCCcHHHHHHHhcCCC-CCEEEEEChhhccccc---------CCCHHHHHHHHhccccEEEEecccccc
Confidence 11 112333333333333333222 3489999999994321 12345666666653
Q ss_pred ----CCeEEEEccChHHHHHHhhccHHHHhccccEEecCCCHHHHHHHHHHHHH-HHHhh-----cCCccCHHHHHHHHH
Q 003088 422 ----GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLRE-KYEAH-----HNCKFTLEAINAAVH 491 (849)
Q Consensus 422 ----~~i~vI~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL~~~~~-~~~~~-----~~~~i~~~~l~~~a~ 491 (849)
+++.+|+|+|.. .++++|++||..|.+..++.++..+|.+..+. +.... ..+.++++++..++.
T Consensus 460 ~~dls~v~~i~TaN~~------~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~ 533 (784)
T PRK10787 460 DYDLSDVMFVATSNSM------NIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIR 533 (784)
T ss_pred cccCCceEEEEcCCCC------CCCHHHhcceeeeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHH
Confidence 668889988753 68999999999999999999999999988663 22111 246799999998886
No 203
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.43 E-value=2.7e-13 Score=156.22 Aligned_cols=170 Identities=22% Similarity=0.286 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHHHhccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCC----ce
Q 003088 615 DERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSES----SM 690 (849)
Q Consensus 615 ~~~~~~~~l~~~l~~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~----~~ 690 (849)
.++++++.+ ++|+||+.+++.|..++...+. ...+||+||+|||||++|+++|+.+.+... |+
T Consensus 7 ~~kyRP~~f-----~divGq~~v~~~L~~~~~~~~l--------~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pC 73 (509)
T PRK14958 7 ARKWRPRCF-----QEVIGQAPVVRALSNALDQQYL--------HHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPC 73 (509)
T ss_pred HHHHCCCCH-----HHhcCCHHHHHHHHHHHHhCCC--------CeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccC
Confidence 344555444 5599999999999999976432 123899999999999999999999855321 11
Q ss_pred eEe-eccccccccccccccCCCCCccccccCcchhHHHHh----CCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCC
Q 003088 691 LRL-DMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRR----RPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHG 765 (849)
Q Consensus 691 i~i-~~~~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~i~~----~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g 765 (849)
-.+ .|..+.....+..+.-.+.+..|.++...+.+.+.. ..+.|+||||+|.+++..+|.|++.||+
T Consensus 74 g~C~~C~~i~~g~~~d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEe-------- 145 (509)
T PRK14958 74 NDCENCREIDEGRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEE-------- 145 (509)
T ss_pred CCCHHHHHHhcCCCceEEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhc--------
Confidence 110 111111111111000001112232222222232222 3467999999999999999999999998
Q ss_pred ceeecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHHHcc
Q 003088 766 RRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQ 845 (849)
Q Consensus 766 ~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~ 845 (849)
...+++||++|+.... +.+.+++|| ..+.|.+++.+++.+
T Consensus 146 ---pp~~~~fIlattd~~k------------------------------------l~~tI~SRc-~~~~f~~l~~~~i~~ 185 (509)
T PRK14958 146 ---PPSHVKFILATTDHHK------------------------------------LPVTVLSRC-LQFHLAQLPPLQIAA 185 (509)
T ss_pred ---cCCCeEEEEEECChHh------------------------------------chHHHHHHh-hhhhcCCCCHHHHHH
Confidence 3457888888764211 456688888 778888888877654
No 204
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.43 E-value=1.6e-12 Score=134.30 Aligned_cols=186 Identities=21% Similarity=0.262 Sum_probs=114.7
Q ss_pred CCCCcc-ccHHH--HHHHHHHHhcCC--CCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhccc-
Q 003088 288 LIDPVI-GRETE--IQRIIQILCRRT--KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGA- 361 (849)
Q Consensus 288 ~l~~ii-G~~~~--i~~l~~~l~~~~--~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~~~- 361 (849)
+|+.+| |..+. ...+..+..... .+.++|+||+|+|||+|.+++++++.+. ..+.+++.++...+....
T Consensus 6 tFdnfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~-----~~~~~v~y~~~~~f~~~~~ 80 (219)
T PF00308_consen 6 TFDNFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQ-----HPGKRVVYLSAEEFIREFA 80 (219)
T ss_dssp SCCCS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHH-----CTTS-EEEEEHHHHHHHHH
T ss_pred ccccCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhc-----cccccceeecHHHHHHHHH
Confidence 566664 64333 333444433322 2457999999999999999999998542 125677777765543211
Q ss_pred --cccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCCCeEEEEccChHHHHHHh
Q 003088 362 --KERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQF 439 (849)
Q Consensus 362 --~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~~i~vI~at~~~~~~~~~ 439 (849)
...+. +..+.+.++.. .+|+||++|.+.+.. .....+.+++....++++.++|.+...+. .+.
T Consensus 81 ~~~~~~~----~~~~~~~~~~~--DlL~iDDi~~l~~~~-------~~q~~lf~l~n~~~~~~k~li~ts~~~P~--~l~ 145 (219)
T PF00308_consen 81 DALRDGE----IEEFKDRLRSA--DLLIIDDIQFLAGKQ-------RTQEELFHLFNRLIESGKQLILTSDRPPS--ELS 145 (219)
T ss_dssp HHHHTTS----HHHHHHHHCTS--SEEEEETGGGGTTHH-------HHHHHHHHHHHHHHHTTSEEEEEESS-TT--TTT
T ss_pred HHHHccc----chhhhhhhhcC--CEEEEecchhhcCch-------HHHHHHHHHHHHHHhhCCeEEEEeCCCCc--ccc
Confidence 00111 22333334433 499999999994210 11344566677777788776666655443 233
Q ss_pred hccHHHHhccc---cEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhccc
Q 003088 440 EKDKALARRFQ---PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497 (849)
Q Consensus 440 ~~d~al~~Rf~---~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~ 497 (849)
.+++.|.+||. .+.+.+|+.+++.+||+..+. ..++.++++++..++....+-+
T Consensus 146 ~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~----~~~~~l~~~v~~~l~~~~~~~~ 202 (219)
T PF00308_consen 146 GLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAK----ERGIELPEEVIEYLARRFRRDV 202 (219)
T ss_dssp TS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHH----HTT--S-HHHHHHHHHHTTSSH
T ss_pred ccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHH----HhCCCCcHHHHHHHHHhhcCCH
Confidence 57899999996 599999999999999998887 7789999999999988776543
No 205
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=99.43 E-value=5.4e-13 Score=138.22 Aligned_cols=210 Identities=13% Similarity=0.134 Sum_probs=156.3
Q ss_pred cchhHHhhhhhhHHHHhhcCCCCccccHHHHHHHHHHHhcCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCe
Q 003088 269 RASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKR 348 (849)
Q Consensus 269 ~~~~l~~~~~~l~~~~~~~~l~~iiG~~~~i~~l~~~l~~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~ 348 (849)
....-.++..+|+++|+|..+++++++++.+..+.......+.+|+|+|||||+|||+...+.|..+... .+. +..
T Consensus 20 ~~p~~~~~~~pwvekyrP~~l~dv~~~~ei~st~~~~~~~~~lPh~L~YgPPGtGktsti~a~a~~ly~~-~~~---~~m 95 (360)
T KOG0990|consen 20 YIPQSPQYPQPWVEKYRPPFLGIVIKQEPIWSTENRYSGMPGLPHLLFYGPPGTGKTSTILANARDFYSP-HPT---TSM 95 (360)
T ss_pred CCCCCcccCCCCccCCCCchhhhHhcCCchhhHHHHhccCCCCCcccccCCCCCCCCCchhhhhhhhcCC-CCc---hhH
Confidence 3444567889999999999999999999999999999888888999999999999999999999998542 111 111
Q ss_pred EEEeehhhhhccccccchHHHHHHHHHHHHHh-------cCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcC
Q 003088 349 IMSLDMGLLMAGAKERGELEARVTTLISEIQK-------SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR 421 (849)
Q Consensus 349 ~~~l~~~~~~~~~~~~g~~e~~l~~l~~~~~~-------~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~ 421 (849)
+.+++.++ ...++-....++ .|...+. .....+++||+|.+ +.+++|.|++.+++
T Consensus 96 ~lelnaSd----~rgid~vr~qi~-~fast~~~~~fst~~~fKlvILDEADaM-------------T~~AQnALRRviek 157 (360)
T KOG0990|consen 96 LLELNASD----DRGIDPVRQQIH-LFASTQQPTTYSTHAAFKLVILDEADAM-------------TRDAQNALRRVIEK 157 (360)
T ss_pred HHHhhccC----ccCCcchHHHHH-HHHhhccceeccccCceeEEEecchhHh-------------hHHHHHHHHHHHHH
Confidence 22222221 111222222222 2222221 25679999999999 78999999998874
Q ss_pred --CCeEEEEccChHHHHHHhhccHHHHhccccEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhccccc
Q 003088 422 --GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISD 499 (849)
Q Consensus 422 --~~i~vI~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~~~ 499 (849)
.+.+|+..+|+.. .+.|++++||+++.|.+.+..+....+..+++ ......+++...+++.++.+.+.
T Consensus 158 ~t~n~rF~ii~n~~~-----ki~pa~qsRctrfrf~pl~~~~~~~r~shi~e----~e~~~~~~~~~~a~~r~s~gDmr- 227 (360)
T KOG0990|consen 158 YTANTRFATISNPPQ-----KIHPAQQSRCTRFRFAPLTMAQQTERQSHIRE----SEQKETNPEGYSALGRLSVGDMR- 227 (360)
T ss_pred hccceEEEEeccChh-----hcCchhhcccccCCCCCCChhhhhhHHHHHHh----cchhhcCHHHHHHHHHHhHHHHH-
Confidence 4566666667776 78899999999999999999999999988887 77788899988888888777553
Q ss_pred CcchhhHHHHHHHHhh
Q 003088 500 RYLPDKAIDLVDEAGS 515 (849)
Q Consensus 500 r~~p~~ai~ll~~a~~ 515 (849)
++.+.|+....
T Consensus 228 -----~a~n~Lqs~~~ 238 (360)
T KOG0990|consen 228 -----VALNYLQSILK 238 (360)
T ss_pred -----HHHHHHHHHHH
Confidence 56666665544
No 206
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.42 E-value=1e-12 Score=144.83 Aligned_cols=165 Identities=28% Similarity=0.399 Sum_probs=115.1
Q ss_pred HHHHHHHhccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeecccccc
Q 003088 621 VGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYME 700 (849)
Q Consensus 621 ~~l~~~l~~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~ 700 (849)
......+...++|+++++..+..++... +|+||.||||||||++|+.+|+.+ +.+|+++.|.....
T Consensus 16 ~~~~~~~~~~~~g~~~~~~~~l~a~~~~-----------~~vll~G~PG~gKT~la~~lA~~l---~~~~~~i~~t~~l~ 81 (329)
T COG0714 16 GKIRSELEKVVVGDEEVIELALLALLAG-----------GHVLLEGPPGVGKTLLARALARAL---GLPFVRIQCTPDLL 81 (329)
T ss_pred HHHHhhcCCeeeccHHHHHHHHHHHHcC-----------CCEEEECCCCccHHHHHHHHHHHh---CCCeEEEecCCCCC
Confidence 3445556677999999888876666542 349999999999999999999997 47899999986654
Q ss_pred ccccccccCCCCCc--------cccccCcchhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeec-C
Q 003088 701 RHTVSKLIGSPPGY--------VGYEEGGLLTEAIRRRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSF-K 771 (849)
Q Consensus 701 ~~~~~~l~g~~~g~--------vg~~~~~~l~~~i~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~-~ 771 (849)
.++++|...-. .-+. .+.++...+ +|+|+|||+++++.+|+.|+++|++++++..+-..+.. .
T Consensus 82 ---p~d~~G~~~~~~~~~~~~~~~~~-~gpl~~~~~----~ill~DEInra~p~~q~aLl~~l~e~~vtv~~~~~~~~~~ 153 (329)
T COG0714 82 ---PSDLLGTYAYAALLLEPGEFRFV-PGPLFAAVR----VILLLDEINRAPPEVQNALLEALEERQVTVPGLTTIRLPP 153 (329)
T ss_pred ---HHHhcCchhHhhhhccCCeEEEe-cCCcccccc----eEEEEeccccCCHHHHHHHHHHHhCcEEEECCcCCcCCCC
Confidence 34455542100 0011 222333322 69999999999999999999999999988765331333 4
Q ss_pred CeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCC
Q 003088 772 NALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSL 838 (849)
Q Consensus 772 ~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl 838 (849)
.+++|+|+|++... | + .-+.+++++||...+.+..+
T Consensus 154 ~f~viaT~Np~e~~---------g-----~-----------------~~l~eA~ldRf~~~~~v~yp 189 (329)
T COG0714 154 PFIVIATQNPGEYE---------G-----T-----------------YPLPEALLDRFLLRIYVDYP 189 (329)
T ss_pred CCEEEEccCccccC---------C-----C-----------------cCCCHHHHhhEEEEEecCCC
Confidence 77888888964211 1 0 00678999999666666655
No 207
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.42 E-value=2.7e-12 Score=142.04 Aligned_cols=196 Identities=14% Similarity=0.136 Sum_probs=132.6
Q ss_pred HhhcCCCCccccHHHHHHHHHHHhcCCCCC-CeEeCCCCChHHHHHHHHHHHhhhCCCCcc------------cc-----
Q 003088 284 ASEELIDPVIGRETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEVPVF------------LL----- 345 (849)
Q Consensus 284 ~~~~~l~~iiG~~~~i~~l~~~l~~~~~~n-iLL~GppGtGKT~la~~la~~l~~~~~p~~------------~~----- 345 (849)
.+|..++++||+++.++.+...+.+.+.+| +||+||+|+||+++|.++|+.+.+...... ..
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c 92 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVA 92 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHH
Confidence 477888999999999999999999888887 789999999999999999999976432110 00
Q ss_pred -------CCeEEEeehhhhhccccc-cchHHHHHHHHHHHHH----hcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHH
Q 003088 346 -------SKRIMSLDMGLLMAGAKE-RGELEARVTTLISEIQ----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISN 413 (849)
Q Consensus 346 -------~~~~~~l~~~~~~~~~~~-~g~~e~~l~~l~~~~~----~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~ 413 (849)
.-.++.+....-..+.+. ..-..+.++.+.+.+. .+++.|++|||+|.+ +..++|
T Consensus 93 ~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m-------------~~~aan 159 (365)
T PRK07471 93 RRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEM-------------NANAAN 159 (365)
T ss_pred HHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhc-------------CHHHHH
Confidence 001122211000000000 0012233555555443 256789999999999 567788
Q ss_pred HHhhhhcCC--CeEEEEccChHHHHHHhhccHHHHhccccEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHH
Q 003088 414 LLKPSLGRG--ELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVH 491 (849)
Q Consensus 414 ~L~~~le~~--~i~vI~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ 491 (849)
.|+..+++. ..++|.+|+..+ .+.+.+++||+.+.|++|+.++..++|.... ...+++.+..++.
T Consensus 160 aLLK~LEepp~~~~~IL~t~~~~-----~llpti~SRc~~i~l~~l~~~~i~~~L~~~~--------~~~~~~~~~~l~~ 226 (365)
T PRK07471 160 ALLKVLEEPPARSLFLLVSHAPA-----RLLPTIRSRCRKLRLRPLAPEDVIDALAAAG--------PDLPDDPRAALAA 226 (365)
T ss_pred HHHHHHhcCCCCeEEEEEECCch-----hchHHhhccceEEECCCCCHHHHHHHHHHhc--------ccCCHHHHHHHHH
Confidence 999999863 566666666665 5678999999999999999999988886532 2344455556666
Q ss_pred hhhcccccCcchhhHHHHHH
Q 003088 492 LSARYISDRYLPDKAIDLVD 511 (849)
Q Consensus 492 ls~~~~~~r~~p~~ai~ll~ 511 (849)
++++ .|..++.+++
T Consensus 227 ~s~G------sp~~Al~ll~ 240 (365)
T PRK07471 227 LAEG------SVGRALRLAG 240 (365)
T ss_pred HcCC------CHHHHHHHhc
Confidence 6665 3445555544
No 208
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.42 E-value=1.4e-12 Score=143.82 Aligned_cols=158 Identities=19% Similarity=0.270 Sum_probs=110.5
Q ss_pred ccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeecccccccccccccc
Q 003088 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLI 708 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~ 708 (849)
++++||++.++.+...+...... ..+..+++|+||||||||++|+++|+.+ +..+...+.+.+..
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~----~~~~~~~ll~GppG~GKT~la~~ia~~l---~~~~~~~~~~~~~~-------- 89 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKR----GEALDHVLLYGPPGLGKTTLANIIANEM---GVNIRITSGPALEK-------- 89 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhc----CCCCCcEEEECCCCccHHHHHHHHHHHh---CCCeEEEecccccC--------
Confidence 56899999999998888654322 2334569999999999999999999987 23344333332111
Q ss_pred CCCCCccccccCcchhHHHHh-CCCeEEEEeCccccCHHHHHHHHHHhhcCeeec--CCC---ce--eecCCeEEEEecC
Q 003088 709 GSPPGYVGYEEGGLLTEAIRR-RPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTD--SHG---RR--VSFKNALIVMTSN 780 (849)
Q Consensus 709 g~~~g~vg~~~~~~l~~~i~~-~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~--~~g---~~--~~~~~~~iI~tsn 780 (849)
.+.+...+.. ..++||||||||.++...++.|+..|++..+.. ..+ +. ...+.+.+|++||
T Consensus 90 -----------~~~l~~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~ 158 (328)
T PRK00080 90 -----------PGDLAAILTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATT 158 (328)
T ss_pred -----------hHHHHHHHHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecC
Confidence 1122222222 346799999999999999999999999865321 111 11 1234577888887
Q ss_pred CCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHHHccccC
Q 003088 781 VGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQLPL 848 (849)
Q Consensus 781 ~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~I~~ 848 (849)
... .+.++|.+||..++.|.+++.+++.+|++
T Consensus 159 ~~~------------------------------------~l~~~L~sRf~~~~~l~~~~~~e~~~il~ 190 (328)
T PRK00080 159 RAG------------------------------------LLTSPLRDRFGIVQRLEFYTVEELEKIVK 190 (328)
T ss_pred Ccc------------------------------------cCCHHHHHhcCeeeecCCCCHHHHHHHHH
Confidence 521 16788999998899999999999988764
No 209
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.42 E-value=5.1e-13 Score=151.56 Aligned_cols=163 Identities=16% Similarity=0.257 Sum_probs=104.3
Q ss_pred ccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCC----ceeEe-eccccccccc
Q 003088 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSES----SMLRL-DMSEYMERHT 703 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~----~~i~i-~~~~~~~~~~ 703 (849)
++++||+.+++.+..++...+ ...++||+||+|||||++|+.+|+.+..... ++-.+ .|..+.....
T Consensus 13 ~dliGQe~vv~~L~~a~~~~r--------i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~ 84 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNK--------IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNH 84 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCC--------CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCC
Confidence 559999999999988876532 1235999999999999999999998743221 11110 1111111111
Q ss_pred cccccCCCCCccccccCcchhHHHHhC----CCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEec
Q 003088 704 VSKLIGSPPGYVGYEEGGLLTEAIRRR----PFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTS 779 (849)
Q Consensus 704 ~~~l~g~~~g~vg~~~~~~l~~~i~~~----~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ts 779 (849)
..-+.-.+.+..|.++...+.+.+... .+.|++|||+|.++.+.+|.|++.||+ +.++++||+++
T Consensus 85 ~Dv~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEe-----------Pp~~v~fIlat 153 (491)
T PRK14964 85 PDVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEE-----------PAPHVKFILAT 153 (491)
T ss_pred CCEEEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhC-----------CCCCeEEEEEe
Confidence 110111111223333222233333333 367999999999999999999999998 34578888887
Q ss_pred CCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHHHcccc
Q 003088 780 NVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQLP 847 (849)
Q Consensus 780 n~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~I~ 847 (849)
+.... +.+.+.+|+ ..+.|.+++.+++.+.+
T Consensus 154 te~~K------------------------------------l~~tI~SRc-~~~~f~~l~~~el~~~L 184 (491)
T PRK14964 154 TEVKK------------------------------------IPVTIISRC-QRFDLQKIPTDKLVEHL 184 (491)
T ss_pred CChHH------------------------------------HHHHHHHhh-eeeecccccHHHHHHHH
Confidence 63111 456788888 78888888888776543
No 210
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=6.2e-13 Score=154.13 Aligned_cols=159 Identities=27% Similarity=0.391 Sum_probs=117.1
Q ss_pred hccccccHHHHHHHHHHHH-------HhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeecccccc
Q 003088 628 KKRVIGQDEAVAAISRAVK-------RSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYME 700 (849)
Q Consensus 628 ~~~i~Gq~~~i~~l~~~l~-------~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~ 700 (849)
++++.|.+++++.|...+. +-+.|.+.|. .+||+||||||||.+|+++|.+ .+.||+.+..+++.+
T Consensus 310 FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPk----GvLL~GPPGTGKTLLAKAiAGE---AgVPF~svSGSEFvE 382 (774)
T KOG0731|consen 310 FKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPK----GVLLVGPPGTGKTLLAKAIAGE---AGVPFFSVSGSEFVE 382 (774)
T ss_pred cccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcC----ceEEECCCCCcHHHHHHHHhcc---cCCceeeechHHHHH
Confidence 3668888888888777663 3455655544 3999999999999999999987 588999999999976
Q ss_pred ccccccccCCCCCccccccCcchhHHHHhCCCeEEEEeCccccC---------------HHHHHHHHHHhhcCeeecCCC
Q 003088 701 RHTVSKLIGSPPGYVGYEEGGLLTEAIRRRPFTLLLLDEIEKAH---------------PDIFNILLQVFEDGHLTDSHG 765 (849)
Q Consensus 701 ~~~~~~l~g~~~g~vg~~~~~~l~~~i~~~~~~vl~lDEid~l~---------------~~~~~~Ll~~le~g~~~~~~g 765 (849)
. +.| +|......++...+...+||+|+||||... ...+|+||..||...
T Consensus 383 ~-----~~g-----~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~------ 446 (774)
T KOG0731|consen 383 M-----FVG-----VGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFE------ 446 (774)
T ss_pred H-----hcc-----cchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCc------
Confidence 3 222 122222335555556667999999999662 237889999998632
Q ss_pred ceeecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHh--hccccEEEcCCCCHHHH
Q 003088 766 RRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELL--NRIDEVVVFRSLEKAQV 843 (849)
Q Consensus 766 ~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell--~R~d~~i~f~pl~~~~~ 843 (849)
...+++|+++||..-. ++++|+ .|||..|....++....
T Consensus 447 ---~~~~vi~~a~tnr~d~------------------------------------ld~allrpGRfdr~i~i~~p~~~~r 487 (774)
T KOG0731|consen 447 ---TSKGVIVLAATNRPDI------------------------------------LDPALLRPGRFDRQIQIDLPDVKGR 487 (774)
T ss_pred ---CCCcEEEEeccCCccc------------------------------------cCHHhcCCCccccceeccCCchhhh
Confidence 1247899999997321 678888 89999999999988777
Q ss_pred ccccC
Q 003088 844 CQLPL 848 (849)
Q Consensus 844 ~~I~~ 848 (849)
.+|++
T Consensus 488 ~~i~~ 492 (774)
T KOG0731|consen 488 ASILK 492 (774)
T ss_pred HHHHH
Confidence 77764
No 211
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.41 E-value=1.5e-12 Score=142.40 Aligned_cols=158 Identities=19% Similarity=0.307 Sum_probs=107.9
Q ss_pred ccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeecccccccccccccc
Q 003088 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLI 708 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~ 708 (849)
+.++||++.++.+...+...... ..+..+++|+||||||||++|+++++.+ +..+..++++....
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~----~~~~~~~ll~Gp~G~GKT~la~~ia~~~---~~~~~~~~~~~~~~-------- 68 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMR----QEALDHLLLYGPPGLGKTTLAHIIANEM---GVNLKITSGPALEK-------- 68 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhc----CCCCCeEEEECCCCCCHHHHHHHHHHHh---CCCEEEeccchhcC--------
Confidence 56899999999998888654322 1223469999999999999999999986 22333333221110
Q ss_pred CCCCCccccccCcchhHHHHh-CCCeEEEEeCccccCHHHHHHHHHHhhcCeeec--CCC---c--eeecCCeEEEEecC
Q 003088 709 GSPPGYVGYEEGGLLTEAIRR-RPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTD--SHG---R--RVSFKNALIVMTSN 780 (849)
Q Consensus 709 g~~~g~vg~~~~~~l~~~i~~-~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~--~~g---~--~~~~~~~~iI~tsn 780 (849)
.+.+.+.+.. ..+.+|||||++.+++..++.|+..|+++.... ..+ + ....+.+.+|.++|
T Consensus 69 -----------~~~l~~~l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~ 137 (305)
T TIGR00635 69 -----------PGDLAAILTNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATT 137 (305)
T ss_pred -----------chhHHHHHHhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecC
Confidence 1122232222 235799999999999999999999998766321 111 1 12234567777777
Q ss_pred CCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHHHccccC
Q 003088 781 VGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQLPL 848 (849)
Q Consensus 781 ~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~I~~ 848 (849)
... .+.++|.+||..++.|.|++.+++.+|++
T Consensus 138 ~~~------------------------------------~l~~~l~sR~~~~~~l~~l~~~e~~~il~ 169 (305)
T TIGR00635 138 RAG------------------------------------MLTSPLRDRFGIILRLEFYTVEELAEIVS 169 (305)
T ss_pred Ccc------------------------------------ccCHHHHhhcceEEEeCCCCHHHHHHHHH
Confidence 531 16788999998889999999999888763
No 212
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.41 E-value=8e-12 Score=130.51 Aligned_cols=182 Identities=14% Similarity=0.183 Sum_probs=116.5
Q ss_pred cCCCCcc-cc-HHHHHHHHHHHh-cCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhccccc
Q 003088 287 ELIDPVI-GR-ETEIQRIIQILC-RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKE 363 (849)
Q Consensus 287 ~~l~~ii-G~-~~~i~~l~~~l~-~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~~~~~ 363 (849)
.+|++++ |. +..+..+.++.. .....+++|+||+|||||++|+++++..... +..++.+++......
T Consensus 15 ~~~d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~-------~~~~~~i~~~~~~~~--- 84 (227)
T PRK08903 15 PTFDNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYG-------GRNARYLDAASPLLA--- 84 (227)
T ss_pred hhhcccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhC-------CCcEEEEehHHhHHH---
Confidence 4566666 33 344444555443 2455789999999999999999999987543 455566665543210
Q ss_pred cchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCCCeEEEEccChHHHHHHhhccH
Q 003088 364 RGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDK 443 (849)
Q Consensus 364 ~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~~i~vI~at~~~~~~~~~~~d~ 443 (849)
+.. .....+|||||+|.+.+ .....+..++...-+++..++|.+++... ....+.+
T Consensus 85 -----------~~~--~~~~~~liiDdi~~l~~---------~~~~~L~~~~~~~~~~~~~~vl~~~~~~~--~~~~l~~ 140 (227)
T PRK08903 85 -----------FDF--DPEAELYAVDDVERLDD---------AQQIALFNLFNRVRAHGQGALLVAGPAAP--LALPLRE 140 (227)
T ss_pred -----------Hhh--cccCCEEEEeChhhcCc---------hHHHHHHHHHHHHHHcCCcEEEEeCCCCH--HhCCCCH
Confidence 111 12346999999999821 11223344444433456654555555432 1234568
Q ss_pred HHHhcc---ccEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhcccccCcchhhHHHHHHH
Q 003088 444 ALARRF---QPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDE 512 (849)
Q Consensus 444 al~~Rf---~~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~~~r~~p~~ai~ll~~ 512 (849)
.|.+|| ..+.+++|+.++...++..... ..++.++++++..++..+.+-+ ..+.++++.
T Consensus 141 ~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~----~~~v~l~~~al~~L~~~~~gn~------~~l~~~l~~ 202 (227)
T PRK08903 141 DLRTRLGWGLVYELKPLSDADKIAALKAAAA----ERGLQLADEVPDYLLTHFRRDM------PSLMALLDA 202 (227)
T ss_pred HHHHHHhcCeEEEecCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHhccCCH------HHHHHHHHH
Confidence 899888 3699999999998888876655 5689999999999887555432 355555554
No 213
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.41 E-value=8.4e-13 Score=151.63 Aligned_cols=162 Identities=23% Similarity=0.349 Sum_probs=103.4
Q ss_pred ccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCC----CceeE-eeccccccccc
Q 003088 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSE----SSMLR-LDMSEYMERHT 703 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~----~~~i~-i~~~~~~~~~~ 703 (849)
++|+||+.+++.|..++...+ ....+||+||+|||||++|+++|+.+.+.. .++-. -.|..+.....
T Consensus 15 ddVIGQe~vv~~L~~aI~~gr--------l~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~h 86 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGR--------LHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRF 86 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCC--------CCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCC
Confidence 569999999999998887532 123489999999999999999999985421 11110 01111111110
Q ss_pred cccccC-CCCCccccccCcchhHHHH----hCCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEe
Q 003088 704 VSKLIG-SPPGYVGYEEGGLLTEAIR----RRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMT 778 (849)
Q Consensus 704 ~~~l~g-~~~g~vg~~~~~~l~~~i~----~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~t 778 (849)
+ .++- .+....+.+....+.+.+. ...+.|+||||+|.++...+|.|++.||+ ...+++||++
T Consensus 87 p-DviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEE-----------PP~~v~FILa 154 (702)
T PRK14960 87 I-DLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEE-----------PPEHVKFLFA 154 (702)
T ss_pred C-ceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhc-----------CCCCcEEEEE
Confidence 1 0100 0011112211111222221 23467999999999999999999999998 2346788888
Q ss_pred cCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHHHcccc
Q 003088 779 SNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQLP 847 (849)
Q Consensus 779 sn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~I~ 847 (849)
|+.... +.+.+++|| .++.|.|++.+++.+.+
T Consensus 155 Ttd~~k------------------------------------Ip~TIlSRC-q~feFkpLs~eEI~k~L 186 (702)
T PRK14960 155 TTDPQK------------------------------------LPITVISRC-LQFTLRPLAVDEITKHL 186 (702)
T ss_pred ECChHh------------------------------------hhHHHHHhh-heeeccCCCHHHHHHHH
Confidence 764211 457788999 89999999988876554
No 214
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.41 E-value=7.9e-13 Score=153.66 Aligned_cols=156 Identities=26% Similarity=0.363 Sum_probs=106.8
Q ss_pred ccccccHHHHHHHHHHHHHh-------hcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccc
Q 003088 629 KRVIGQDEAVAAISRAVKRS-------RVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMER 701 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~~-------~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~ 701 (849)
++|+|++++++.+...+... ..|... ..++||+||||||||++|+++|... +.+|+.++++++...
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~----~~giLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~~~~ 127 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKI----PKGVLLVGPPGTGKTLLAKAVAGEA---GVPFFSISGSDFVEM 127 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCC----CCcEEEECCCCCCHHHHHHHHHHHc---CCCeeeccHHHHHHH
Confidence 34677777777766655421 223332 2349999999999999999999885 668898888776432
Q ss_pred cccccccCCCCCccccccC--cchhHHHHhCCCeEEEEeCccccCH--------------HHHHHHHHHhhcCeeecCCC
Q 003088 702 HTVSKLIGSPPGYVGYEEG--GLLTEAIRRRPFTLLLLDEIEKAHP--------------DIFNILLQVFEDGHLTDSHG 765 (849)
Q Consensus 702 ~~~~~l~g~~~g~vg~~~~--~~l~~~i~~~~~~vl~lDEid~l~~--------------~~~~~Ll~~le~g~~~~~~g 765 (849)
|+|..+. ..+....+...++||||||||.+.+ .+++.|+..|+.-.
T Consensus 128 ------------~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~------ 189 (495)
T TIGR01241 128 ------------FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFG------ 189 (495)
T ss_pred ------------HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhcccc------
Confidence 2222221 1233333445568999999998742 35677777776421
Q ss_pred ceeecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhh--ccccEEEcCCCCHHHH
Q 003088 766 RRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLN--RIDEVVVFRSLEKAQV 843 (849)
Q Consensus 766 ~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~--R~d~~i~f~pl~~~~~ 843 (849)
...+++||+|||.... ++|.|+. |||..|.+++++.++.
T Consensus 190 ---~~~~v~vI~aTn~~~~------------------------------------ld~al~r~gRfd~~i~i~~Pd~~~R 230 (495)
T TIGR01241 190 ---TNTGVIVIAATNRPDV------------------------------------LDPALLRPGRFDRQVVVDLPDIKGR 230 (495)
T ss_pred ---CCCCeEEEEecCChhh------------------------------------cCHHHhcCCcceEEEEcCCCCHHHH
Confidence 1235789999997421 6788885 9999999999999888
Q ss_pred ccccC
Q 003088 844 CQLPL 848 (849)
Q Consensus 844 ~~I~~ 848 (849)
.+|++
T Consensus 231 ~~il~ 235 (495)
T TIGR01241 231 EEILK 235 (495)
T ss_pred HHHHH
Confidence 88764
No 215
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.41 E-value=3.7e-12 Score=135.66 Aligned_cols=164 Identities=19% Similarity=0.250 Sum_probs=109.8
Q ss_pred HHHHHHHHHhcCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehh------hhhccc---cccchHH
Q 003088 298 EIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMG------LLMAGA---KERGELE 368 (849)
Q Consensus 298 ~i~~l~~~l~~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~------~~~~~~---~~~g~~e 368 (849)
.++++..++. ...+++|+||||||||++|+++|+.+ +.+++.+++. .++... .......
T Consensus 10 l~~~~l~~l~--~g~~vLL~G~~GtGKT~lA~~la~~l----------g~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~ 77 (262)
T TIGR02640 10 VTSRALRYLK--SGYPVHLRGPAGTGKTTLAMHVARKR----------DRPVMLINGDAELTTSDLVGSYAGYTRKKVHD 77 (262)
T ss_pred HHHHHHHHHh--cCCeEEEEcCCCCCHHHHHHHHHHHh----------CCCEEEEeCCccCCHHHHhhhhcccchhhHHH
Confidence 3444555444 35689999999999999999999876 3444444322 222110 0000000
Q ss_pred HHH----------------HHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCC----------
Q 003088 369 ARV----------------TTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG---------- 422 (849)
Q Consensus 369 ~~l----------------~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~---------- 422 (849)
..+ ..++..++ .+.+|+|||++.+ ..++++.|+.+|+.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~g~l~~A~~--~g~~lllDEi~r~-------------~~~~q~~Ll~~Le~~~~~i~~~~~~ 142 (262)
T TIGR02640 78 QFIHNVVKLEDIVRQNWVDNRLTLAVR--EGFTLVYDEFTRS-------------KPETNNVLLSVFEEGVLELPGKRGT 142 (262)
T ss_pred HHHHHhhhhhcccceeecCchHHHHHH--cCCEEEEcchhhC-------------CHHHHHHHHHHhcCCeEEccCCCCC
Confidence 000 11222232 2459999999998 567788888888632
Q ss_pred --------CeEEEEccChHHHHHHhhccHHHHhccccEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhh
Q 003088 423 --------ELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSA 494 (849)
Q Consensus 423 --------~i~vI~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~ 494 (849)
.+++|+|+|+..|.....++++|.+||..+.++.|+.++-.+|+.... .+.++.++.++.+..
T Consensus 143 ~~~i~~~~~frvIaTsN~~~~~g~~~l~~aL~~R~~~i~i~~P~~~~e~~Il~~~~---------~~~~~~~~~iv~~~~ 213 (262)
T TIGR02640 143 SRYVDVHPEFRVIFTSNPVEYAGVHETQDALLDRLITIFMDYPDIDTETAILRAKT---------DVAEDSAATIVRLVR 213 (262)
T ss_pred CceEecCCCCEEEEeeCCccccceecccHHHHhhcEEEECCCCCHHHHHHHHHHhh---------CCCHHHHHHHHHHHH
Confidence 467999999987776667789999999999999999999999986532 356777777777665
Q ss_pred ccc
Q 003088 495 RYI 497 (849)
Q Consensus 495 ~~~ 497 (849)
..-
T Consensus 214 ~~R 216 (262)
T TIGR02640 214 EFR 216 (262)
T ss_pred HHH
Confidence 543
No 216
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.40 E-value=7.8e-13 Score=159.19 Aligned_cols=171 Identities=21% Similarity=0.282 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCC----c
Q 003088 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSES----S 689 (849)
Q Consensus 614 ~~~~~~~~~l~~~l~~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~----~ 689 (849)
+.+++++..+ ++|+||+.+++.|...+...+.. ..+||+||+|||||++|++|++.+++.+. +
T Consensus 5 l~~KyRP~~f-----~eiiGqe~v~~~L~~~i~~~ri~--------Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~p 71 (824)
T PRK07764 5 LYRRYRPATF-----AEVIGQEHVTEPLSTALDSGRIN--------HAYLFSGPRGCGKTSSARILARSLNCVEGPTSTP 71 (824)
T ss_pred HHHHhCCCCH-----HHhcCcHHHHHHHHHHHHhCCCC--------ceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCC
Confidence 3445555544 45999999999999998754221 23899999999999999999999864321 1
Q ss_pred eeEe-eccccccc----cccccccCCCCCccccccCcchhHHHH----hCCCeEEEEeCccccCHHHHHHHHHHhhcCee
Q 003088 690 MLRL-DMSEYMER----HTVSKLIGSPPGYVGYEEGGLLTEAIR----RRPFTLLLLDEIEKAHPDIFNILLQVFEDGHL 760 (849)
Q Consensus 690 ~i~i-~~~~~~~~----~~~~~l~g~~~g~vg~~~~~~l~~~i~----~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~ 760 (849)
|-.+ .|..+... ..+..+-+. ...|.++...+.+.+. ...+.|+||||+|+|+...+|.||++||+
T Consensus 72 Cg~C~sC~~~~~g~~~~~dv~eidaa--s~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEE--- 146 (824)
T PRK07764 72 CGECDSCVALAPGGPGSLDVTEIDAA--SHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEE--- 146 (824)
T ss_pred CcccHHHHHHHcCCCCCCcEEEeccc--ccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhC---
Confidence 1111 01111100 000011110 1112222122222211 24568999999999999999999999998
Q ss_pred ecCCCceeecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCH
Q 003088 761 TDSHGRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEK 840 (849)
Q Consensus 761 ~~~~g~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~ 840 (849)
...+++||++|+.... +.+.|.+|+ .++.|.+++.
T Consensus 147 --------pP~~~~fIl~tt~~~k------------------------------------Ll~TIrSRc-~~v~F~~l~~ 181 (824)
T PRK07764 147 --------PPEHLKFIFATTEPDK------------------------------------VIGTIRSRT-HHYPFRLVPP 181 (824)
T ss_pred --------CCCCeEEEEEeCChhh------------------------------------hhHHHHhhe-eEEEeeCCCH
Confidence 3457888887764211 456778888 7888888888
Q ss_pred HHHcccc
Q 003088 841 AQVCQLP 847 (849)
Q Consensus 841 ~~~~~I~ 847 (849)
+++.+++
T Consensus 182 ~~l~~~L 188 (824)
T PRK07764 182 EVMRGYL 188 (824)
T ss_pred HHHHHHH
Confidence 7776544
No 217
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.40 E-value=7.2e-13 Score=155.24 Aligned_cols=173 Identities=20% Similarity=0.340 Sum_probs=113.7
Q ss_pred CHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCce--
Q 003088 613 TADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSM-- 690 (849)
Q Consensus 613 ~~~~~~~~~~l~~~l~~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~-- 690 (849)
.|.+++++..+ +.|+||+.+++.|..++...+. ...+||+||+|+|||++|+++|+.+.+.....
T Consensus 7 ~l~~KyRP~~f-----~dIiGQe~~v~~L~~aI~~~rl--------~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~ 73 (725)
T PRK07133 7 ALYRKYRPKTF-----DDIVGQDHIVQTLKNIIKSNKI--------SHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLL 73 (725)
T ss_pred hHHHHhCCCCH-----HHhcCcHHHHHHHHHHHHcCCC--------CeEEEEECCCCCcHHHHHHHHHHHhcccccCCCC
Confidence 44555555554 4589999999999999875321 12389999999999999999999986532211
Q ss_pred -eEeeccccccccccccccCCCCCccccccCcchhHHHHhC----CCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCC
Q 003088 691 -LRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRRR----PFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHG 765 (849)
Q Consensus 691 -i~i~~~~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~i~~~----~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g 765 (849)
..-.|......+ +..+.+.+.+..|.++...+.+.+... .+.|++|||+|.++..+++.|++.||+
T Consensus 74 ~pC~~C~~~~~~~-~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEE-------- 144 (725)
T PRK07133 74 EPCQECIENVNNS-LDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEE-------- 144 (725)
T ss_pred CchhHHHHhhcCC-CcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhc--------
Confidence 011111111111 111111111223333223344444433 467999999999999999999999998
Q ss_pred ceeecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHHHcc
Q 003088 766 RRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQ 845 (849)
Q Consensus 766 ~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~ 845 (849)
+...++||++|+... .+.+.+++|| ..+.|.|++.+++.+
T Consensus 145 ---PP~~tifILaTte~~------------------------------------KLl~TI~SRc-q~ieF~~L~~eeI~~ 184 (725)
T PRK07133 145 ---PPKHVIFILATTEVH------------------------------------KIPLTILSRV-QRFNFRRISEDEIVS 184 (725)
T ss_pred ---CCCceEEEEEcCChh------------------------------------hhhHHHHhhc-eeEEccCCCHHHHHH
Confidence 345778888775311 1667899999 699999999998876
Q ss_pred cc
Q 003088 846 LP 847 (849)
Q Consensus 846 I~ 847 (849)
.+
T Consensus 185 ~L 186 (725)
T PRK07133 185 RL 186 (725)
T ss_pred HH
Confidence 54
No 218
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.40 E-value=1.3e-12 Score=142.22 Aligned_cols=174 Identities=22% Similarity=0.286 Sum_probs=106.6
Q ss_pred ccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcC------CCCceeEeecc-cc---
Q 003088 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFG------SESSMLRLDMS-EY--- 698 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~------~~~~~i~i~~~-~~--- 698 (849)
..|+||+++++.+..++..+ | .+|+||.|+||||||++|++++..+.. ....+..+.+. ..
T Consensus 8 ~~i~Gq~~~~~~l~~~~~~~--~-------~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~~~~~ 78 (334)
T PRK13407 8 SAIVGQEEMKQAMVLTAIDP--G-------IGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWAHV 78 (334)
T ss_pred HHhCCHHHHHHHHHHHHhcc--C-------CCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCcccccc
Confidence 56899999998876554321 1 246999999999999999999999731 11112211111 00
Q ss_pred ---------------ccccccccccCCCC--CccccccCcchhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhhcCeee
Q 003088 699 ---------------MERHTVSKLIGSPP--GYVGYEEGGLLTEAIRRRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLT 761 (849)
Q Consensus 699 ---------------~~~~~~~~l~g~~~--g~vg~~~~~~l~~~i~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~ 761 (849)
....+...++|.-. .....+....-.+.+.++.+++||+|||+.+++.+|+.|++.|++|.++
T Consensus 79 ~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~~~q~~Lle~mee~~v~ 158 (334)
T PRK13407 79 SSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLEDHIVDLLLDVAQSGENV 158 (334)
T ss_pred cCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCHHHHHHHHHHHHcCCeE
Confidence 00011122333200 0000000001122344566789999999999999999999999999854
Q ss_pred c-CCCceeec-CCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCC
Q 003088 762 D-SHGRRVSF-KNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLE 839 (849)
Q Consensus 762 ~-~~g~~~~~-~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~ 839 (849)
. ..|..... ..+++|+|+|+... .++++|++||...|...++.
T Consensus 159 v~r~G~~~~~p~rfiviAt~NP~e~-----------------------------------~l~~aLldRF~~~v~v~~~~ 203 (334)
T PRK13407 159 VEREGLSIRHPARFVLVGSGNPEEG-----------------------------------ELRPQLLDRFGLSVEVRSPR 203 (334)
T ss_pred EEECCeEEecCCCEEEEecCCcccC-----------------------------------CCCHHHHhhcceEEEcCCCC
Confidence 2 23333444 37888888886311 17889999998877777666
Q ss_pred H-HHHccc
Q 003088 840 K-AQVCQL 846 (849)
Q Consensus 840 ~-~~~~~I 846 (849)
. ++..+|
T Consensus 204 ~~~e~~~i 211 (334)
T PRK13407 204 DVETRVEV 211 (334)
T ss_pred cHHHHHHH
Confidence 4 444444
No 219
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.39 E-value=1.2e-12 Score=152.04 Aligned_cols=163 Identities=20% Similarity=0.303 Sum_probs=104.8
Q ss_pred ccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCC----ceeEe-eccccccc--
Q 003088 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSES----SMLRL-DMSEYMER-- 701 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~----~~i~i-~~~~~~~~-- 701 (849)
++|+||+.+++.|..++...+. ...+||+||+|||||++|+++|+.+++... ++-.+ .|..+...
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r~--------~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~ 84 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGRI--------NHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGP 84 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC--------CeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccC
Confidence 5699999999999998875321 122799999999999999999999864321 11111 11111110
Q ss_pred cccccccCCCCCccccccCcchhHHHH----hCCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEE
Q 003088 702 HTVSKLIGSPPGYVGYEEGGLLTEAIR----RRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVM 777 (849)
Q Consensus 702 ~~~~~l~g~~~g~vg~~~~~~l~~~i~----~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ 777 (849)
....-+.-......|.++...+.+.+. ...+.|++|||+|.++...+|.||+.||+ ...+++||+
T Consensus 85 ~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEE-----------pp~~~~fIL 153 (584)
T PRK14952 85 GSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEE-----------PPEHLIFIF 153 (584)
T ss_pred CCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhc-----------CCCCeEEEE
Confidence 000000000011122222222323222 24567999999999999999999999998 345888888
Q ss_pred ecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHHHcccc
Q 003088 778 TSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQLP 847 (849)
Q Consensus 778 tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~I~ 847 (849)
+|+.... +.+.+.+|+ ..+.|.+++.+++.+.+
T Consensus 154 ~tte~~k------------------------------------ll~TI~SRc-~~~~F~~l~~~~i~~~L 186 (584)
T PRK14952 154 ATTEPEK------------------------------------VLPTIRSRT-HHYPFRLLPPRTMRALI 186 (584)
T ss_pred EeCChHh------------------------------------hHHHHHHhc-eEEEeeCCCHHHHHHHH
Confidence 7764211 567888998 78899999888776543
No 220
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.39 E-value=9.7e-13 Score=146.73 Aligned_cols=163 Identities=21% Similarity=0.295 Sum_probs=102.7
Q ss_pred ccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCC----CceeE-eeccccccccc
Q 003088 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSE----SSMLR-LDMSEYMERHT 703 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~----~~~i~-i~~~~~~~~~~ 703 (849)
++|+||+.+++.+..++...+. ...+||+||+|||||++|+++++.+.+.. .|+-. ..|.++.....
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~~--------~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~ 87 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGRI--------HHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLC 87 (363)
T ss_pred hhccChHHHHHHHHHHHHcCCC--------CeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 5699999999999888865321 12379999999999999999999985321 11110 01111111111
Q ss_pred cccccCCCCCccccccCcchhHHHHhC----CCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEec
Q 003088 704 VSKLIGSPPGYVGYEEGGLLTEAIRRR----PFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTS 779 (849)
Q Consensus 704 ~~~l~g~~~g~vg~~~~~~l~~~i~~~----~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ts 779 (849)
...+.-.+....+......+.+.+... .+.|++|||+|+++...+|.|++.||+ +..+++||++|
T Consensus 88 ~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe-----------~~~~~~fIl~t 156 (363)
T PRK14961 88 LDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEE-----------PPQHIKFILAT 156 (363)
T ss_pred CceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhc-----------CCCCeEEEEEc
Confidence 110000011011111111222222222 356999999999999999999999998 23467788877
Q ss_pred CCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHHHcccc
Q 003088 780 NVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQLP 847 (849)
Q Consensus 780 n~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~I~ 847 (849)
+.... +.+.+.+|+ ..+.|.|++.+++.+++
T Consensus 157 ~~~~~------------------------------------l~~tI~SRc-~~~~~~~l~~~el~~~L 187 (363)
T PRK14961 157 TDVEK------------------------------------IPKTILSRC-LQFKLKIISEEKIFNFL 187 (363)
T ss_pred CChHh------------------------------------hhHHHHhhc-eEEeCCCCCHHHHHHHH
Confidence 63110 567889999 78999999998887654
No 221
>PRK06620 hypothetical protein; Validated
Probab=99.39 E-value=5.7e-12 Score=129.65 Aligned_cols=136 Identities=12% Similarity=0.145 Sum_probs=101.6
Q ss_pred CCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCc
Q 003088 312 NNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEV 391 (849)
Q Consensus 312 ~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi 391 (849)
++++|+||||+|||++++++++.. +..++. . . .. . ...+ . ...+|+||||
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~----------~~~~~~--~--~----~~-~------~~~~---~--~~d~lliDdi 94 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS----------NAYIIK--D--I----FF-N------EEIL---E--KYNAFIIEDI 94 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc----------CCEEcc--h--h----hh-c------hhHH---h--cCCEEEEecc
Confidence 558999999999999999988765 111111 0 0 00 0 0111 1 2358999999
Q ss_pred chhhhCCCCCCCCCCccHHHHHHHhhhhcCCCeEEEEccChHHHHHHhhccHHHHhccc---cEEecCCCHHHHHHHHHH
Q 003088 392 HTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQ---PVLISEPSQEDAVRILLG 468 (849)
Q Consensus 392 ~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~~i~vI~at~~~~~~~~~~~d~al~~Rf~---~i~~~~ps~~e~~~iL~~ 468 (849)
|.+. +..+.+++....++|..++|++++.+. .+.+ ++|++||. .+.+.+|+.+++..+++.
T Consensus 95 ~~~~------------~~~lf~l~N~~~e~g~~ilits~~~p~---~l~l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~k 158 (214)
T PRK06620 95 ENWQ------------EPALLHIFNIINEKQKYLLLTSSDKSR---NFTL-PDLSSRIKSVLSILLNSPDDELIKILIFK 158 (214)
T ss_pred ccch------------HHHHHHHHHHHHhcCCEEEEEcCCCcc---ccch-HHHHHHHhCCceEeeCCCCHHHHHHHHHH
Confidence 9661 345677777778899989999888876 3456 89999998 799999999999999988
Q ss_pred HHHHHHhhcCCccCHHHHHHHHHhhhccc
Q 003088 469 LREKYEAHHNCKFTLEAINAAVHLSARYI 497 (849)
Q Consensus 469 ~~~~~~~~~~~~i~~~~l~~~a~ls~~~~ 497 (849)
.+. ..++.++++++++++..+.+-.
T Consensus 159 ~~~----~~~l~l~~ev~~~L~~~~~~d~ 183 (214)
T PRK06620 159 HFS----ISSVTISRQIIDFLLVNLPREY 183 (214)
T ss_pred HHH----HcCCCCCHHHHHHHHHHccCCH
Confidence 766 4588999999999999887754
No 222
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=1.4e-12 Score=130.55 Aligned_cols=159 Identities=22% Similarity=0.416 Sum_probs=110.3
Q ss_pred ccccccHHHHHHHHHHHH--------HhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeecccccc
Q 003088 629 KRVIGQDEAVAAISRAVK--------RSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYME 700 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~--------~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~ 700 (849)
..|-|.+..|+.+..++. .-..|+++|. .+|+|||||||||.+|++.|..- +..|+.+..+.+.
T Consensus 171 sDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPK----GvLmYGPPGTGKTlmARAcAaqT---~aTFLKLAgPQLV- 242 (424)
T KOG0652|consen 171 SDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPK----GVLMYGPPGTGKTLMARACAAQT---NATFLKLAGPQLV- 242 (424)
T ss_pred cccccHHHHHHHHHHHhccccccHHHHHhcCCCCCC----ceEeeCCCCCcHHHHHHHHHHhc---cchHHHhcchHHH-
Confidence 457788888888888772 2345666554 39999999999999999999763 5556666665543
Q ss_pred ccccccccCCCCCccccccCcchhHH---HHhCCCeEEEEeCcccc-----------CHHHHHHHHHHhhcCeeecCCCc
Q 003088 701 RHTVSKLIGSPPGYVGYEEGGLLTEA---IRRRPFTLLLLDEIEKA-----------HPDIFNILLQVFEDGHLTDSHGR 766 (849)
Q Consensus 701 ~~~~~~l~g~~~g~vg~~~~~~l~~~---i~~~~~~vl~lDEid~l-----------~~~~~~~Ll~~le~g~~~~~~g~ 766 (849)
..++| .+. ..+.++ .++..++|+||||+|.. +.++|..+|.++..- .|.
T Consensus 243 ----QMfIG-------dGA-kLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQL-----DGF 305 (424)
T KOG0652|consen 243 ----QMFIG-------DGA-KLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQL-----DGF 305 (424)
T ss_pred ----hhhhc-------chH-HHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhh-----cCC
Confidence 23333 321 122333 23455699999999966 456888887777531 110
Q ss_pred eeecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHh--hccccEEEcCCCCHHHHc
Q 003088 767 RVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELL--NRIDEVVVFRSLEKAQVC 844 (849)
Q Consensus 767 ~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell--~R~d~~i~f~pl~~~~~~ 844 (849)
.+..++-+|++||.-. .++|+|+ .|+|..|.||-++++...
T Consensus 306 -ss~~~vKviAATNRvD------------------------------------iLDPALlRSGRLDRKIEfP~Pne~aRa 348 (424)
T KOG0652|consen 306 -SSDDRVKVIAATNRVD------------------------------------ILDPALLRSGRLDRKIEFPHPNEEARA 348 (424)
T ss_pred -CCccceEEEeeccccc------------------------------------ccCHHHhhcccccccccCCCCChHHHH
Confidence 0123788999999621 1789998 899999999999999888
Q ss_pred cccCC
Q 003088 845 QLPLI 849 (849)
Q Consensus 845 ~I~~l 849 (849)
+|+++
T Consensus 349 rIlQI 353 (424)
T KOG0652|consen 349 RILQI 353 (424)
T ss_pred HHHHH
Confidence 88754
No 223
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.39 E-value=1.8e-11 Score=138.84 Aligned_cols=207 Identities=17% Similarity=0.195 Sum_probs=136.9
Q ss_pred CCccccHHHHHHHHHHHhc----CCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhh--------
Q 003088 290 DPVIGRETEIQRIIQILCR----RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLL-------- 357 (849)
Q Consensus 290 ~~iiG~~~~i~~l~~~l~~----~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~-------- 357 (849)
+.++||+++++.+...+.. ....+++|+||||+|||++++.+++.+.... .+..++.+++...
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~-----~~~~~v~in~~~~~~~~~~~~ 104 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIA-----VKVVYVYINCQIDRTRYAIFS 104 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhc-----CCcEEEEEECCcCCCHHHHHH
Confidence 4689999999999888733 3457899999999999999999999885432 1344455543211
Q ss_pred -----hcc--ccccc-hHHHHHHHHHHHHHh-cCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhc---CCCeE
Q 003088 358 -----MAG--AKERG-ELEARVTTLISEIQK-SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG---RGELQ 425 (849)
Q Consensus 358 -----~~~--~~~~g-~~e~~l~~l~~~~~~-~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le---~~~i~ 425 (849)
+.+ ...++ .+++.+..+.+.+.. ..+.||+|||+|.+.... ..+....|...++ ..++.
T Consensus 105 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~---------~~~~l~~l~~~~~~~~~~~v~ 175 (394)
T PRK00411 105 EIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKE---------GNDVLYSLLRAHEEYPGARIG 175 (394)
T ss_pred HHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccC---------CchHHHHHHHhhhccCCCeEE
Confidence 011 11122 244445555555544 345899999999996211 1223333333332 23677
Q ss_pred EEEccChHHHHHHhhccHHHHhccc--cEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhcccccCcch
Q 003088 426 CIASTTQDEHRTQFEKDKALARRFQ--PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLP 503 (849)
Q Consensus 426 vI~at~~~~~~~~~~~d~al~~Rf~--~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~~~r~~p 503 (849)
+|++++..+... .+++.+.+||. .|.|++++.++..+||+...+.- .....+++++++.++..+.+.. .-.
T Consensus 176 vI~i~~~~~~~~--~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~--~~~~~~~~~~l~~i~~~~~~~~---Gd~ 248 (394)
T PRK00411 176 VIGISSDLTFLY--ILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEG--FYPGVVDDEVLDLIADLTAREH---GDA 248 (394)
T ss_pred EEEEECCcchhh--hcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhh--cccCCCCHhHHHHHHHHHHHhc---CcH
Confidence 888888765443 36788888884 69999999999999998876421 2234689999999998886532 123
Q ss_pred hhHHHHHHHHhhHH
Q 003088 504 DKAIDLVDEAGSRA 517 (849)
Q Consensus 504 ~~ai~ll~~a~~~~ 517 (849)
..+++++..|+..+
T Consensus 249 r~a~~ll~~a~~~a 262 (394)
T PRK00411 249 RVAIDLLRRAGLIA 262 (394)
T ss_pred HHHHHHHHHHHHHH
Confidence 57788887776544
No 224
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=1.3e-12 Score=133.35 Aligned_cols=158 Identities=22% Similarity=0.299 Sum_probs=106.3
Q ss_pred ccccccHHHHHHHHHHHHH------hhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeecccccccc
Q 003088 629 KRVIGQDEAVAAISRAVKR------SRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERH 702 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~------~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~ 702 (849)
+.|.|.+.+++.|+.++.. ...|.+. |-..+||+|||||||+++|+++|..- +.-|..+..+++..+
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~---PwrgiLLyGPPGTGKSYLAKAVATEA---nSTFFSvSSSDLvSK- 205 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRK---PWRGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSSSDLVSK- 205 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCC---cceeEEEeCCCCCcHHHHHHHHHhhc---CCceEEeehHHHHHH-
Confidence 3466777777777776632 2334443 44459999999999999999999873 567888888877653
Q ss_pred ccccccCCCCCccccccC--cchhHHHHhCCCeEEEEeCccccC-----------HHHHHHHHHHhhcCeeecCCCceee
Q 003088 703 TVSKLIGSPPGYVGYEEG--GLLTEAIRRRPFTLLLLDEIEKAH-----------PDIFNILLQVFEDGHLTDSHGRRVS 769 (849)
Q Consensus 703 ~~~~l~g~~~g~vg~~~~--~~l~~~i~~~~~~vl~lDEid~l~-----------~~~~~~Ll~~le~g~~~~~~g~~~~ 769 (849)
|.|+++. ..|++..++...+||||||||.+. ..+-..||-.|.. . ..+
T Consensus 206 -----------WmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqG-V-------G~d 266 (439)
T KOG0739|consen 206 -----------WMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQG-V-------GND 266 (439)
T ss_pred -----------HhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhc-c-------ccC
Confidence 4555552 357777788888999999999872 3355566666643 2 123
Q ss_pred cCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHHHccccC
Q 003088 770 FKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQLPL 848 (849)
Q Consensus 770 ~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~I~~ 848 (849)
...+.++.+||.+-. ++.++..||+..|.+|-+.......+++
T Consensus 267 ~~gvLVLgATNiPw~------------------------------------LDsAIRRRFekRIYIPLPe~~AR~~MF~ 309 (439)
T KOG0739|consen 267 NDGVLVLGATNIPWV------------------------------------LDSAIRRRFEKRIYIPLPEAHARARMFK 309 (439)
T ss_pred CCceEEEecCCCchh------------------------------------HHHHHHHHhhcceeccCCcHHHhhhhhe
Confidence 345778889997521 5677788887666665555444444443
No 225
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.38 E-value=1.3e-12 Score=148.77 Aligned_cols=185 Identities=19% Similarity=0.224 Sum_probs=121.3
Q ss_pred ccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccc-------
Q 003088 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMER------- 701 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~------- 701 (849)
..++||..+++.+.-++. +. .+++|.||+|+|||++++.++..+..... -..+++..+...
T Consensus 191 ~~v~Gq~~~~~al~laa~----~G-------~~llliG~~GsGKTtLak~L~gllpp~~g-~e~le~~~i~s~~g~~~~~ 258 (506)
T PRK09862 191 SDVIGQEQGKRGLEITAA----GG-------HNLLLIGPPGTGKTMLASRINGLLPDLSN-EEALESAAILSLVNAESVQ 258 (506)
T ss_pred EEEECcHHHHhhhheecc----CC-------cEEEEECCCCCcHHHHHHHHhccCCCCCC-cEEEecchhhhhhcccccc
Confidence 457888877766532222 11 35999999999999999999987632211 122332222110
Q ss_pred -cccccccCCCC------CccccccCcchhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCC-Ccee-ecCC
Q 003088 702 -HTVSKLIGSPP------GYVGYEEGGLLTEAIRRRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSH-GRRV-SFKN 772 (849)
Q Consensus 702 -~~~~~l~g~~~------g~vg~~~~~~l~~~i~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~-g~~~-~~~~ 772 (849)
.....-|-+|. +.+|-. ...-.+.+..+.++||||||++.+++.+|+.|++.||+|.++... |... ...+
T Consensus 259 ~~~~~rPfr~ph~~~s~~~l~GGg-~~~~pG~l~~A~gGvLfLDEi~e~~~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~ 337 (506)
T PRK09862 259 KQWRQRPFRSPHHSASLTAMVGGG-AIPGPGEISLAHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRAKITYPAR 337 (506)
T ss_pred CCcCCCCccCCCccchHHHHhCCC-ceehhhHhhhccCCEEecCCchhCCHHHHHHHHHHHHcCcEEEecCCcceeccCC
Confidence 00000111110 011111 012345778889999999999999999999999999999986542 3333 3459
Q ss_pred eEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhh---CChHHhhccccEEEcCCCCHHHHc
Q 003088 773 ALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAY---FRPELLNRIDEVVVFRSLEKAQVC 844 (849)
Q Consensus 773 ~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~---~~pell~R~d~~i~f~pl~~~~~~ 844 (849)
+++|+|+|+ |.|||..... |.|...+.++| +...|++|||..+..++++.+++.
T Consensus 338 f~lIAa~NP----------~pcG~~~~~~--------c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~~l~ 394 (506)
T PRK09862 338 FQLVAAMNP----------SPTGHYQGNH--------NRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILS 394 (506)
T ss_pred EEEEEeecC----------ccceecCCCC--------CCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHHHHh
Confidence 999999998 3577664321 67777777766 778999999999999999876553
No 226
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.38 E-value=9.6e-13 Score=151.41 Aligned_cols=171 Identities=21% Similarity=0.319 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHHHhccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCC----Cce
Q 003088 615 DERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSE----SSM 690 (849)
Q Consensus 615 ~~~~~~~~l~~~l~~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~----~~~ 690 (849)
.+++++..+ ++++||+.+++.+..++...+. ...+||+||+|||||++|+.+|+.+.+.. .++
T Consensus 7 a~KyRP~~f-----~diiGq~~~v~~L~~~i~~~rl--------~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pC 73 (546)
T PRK14957 7 ARKYRPQSF-----AEVAGQQHALNSLVHALETQKV--------HHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPC 73 (546)
T ss_pred HHHHCcCcH-----HHhcCcHHHHHHHHHHHHcCCC--------CeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCC
Confidence 344444444 5589999999999888875321 12389999999999999999999885421 111
Q ss_pred eEe-eccccccccccccccC-CCCCccccccCcchhHHHHh----CCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCC
Q 003088 691 LRL-DMSEYMERHTVSKLIG-SPPGYVGYEEGGLLTEAIRR----RPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSH 764 (849)
Q Consensus 691 i~i-~~~~~~~~~~~~~l~g-~~~g~vg~~~~~~l~~~i~~----~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~ 764 (849)
-.+ .|..+.... ...++. ......|.++...+.+.+.. ..+.|+||||+|+++...+|.||+.||+
T Consensus 74 g~C~sC~~i~~~~-~~dlieidaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEe------- 145 (546)
T PRK14957 74 NKCENCVAINNNS-FIDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEE------- 145 (546)
T ss_pred cccHHHHHHhcCC-CCceEEeecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhc-------
Confidence 111 011111100 001110 00112333322223333332 3467999999999999999999999998
Q ss_pred CceeecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHHHc
Q 003088 765 GRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVC 844 (849)
Q Consensus 765 g~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~ 844 (849)
....++||++|+... .+.+.+++|+ .++.|.|++.+++.
T Consensus 146 ----pp~~v~fIL~Ttd~~------------------------------------kil~tI~SRc-~~~~f~~Ls~~eI~ 184 (546)
T PRK14957 146 ----PPEYVKFILATTDYH------------------------------------KIPVTILSRC-IQLHLKHISQADIK 184 (546)
T ss_pred ----CCCCceEEEEECChh------------------------------------hhhhhHHHhe-eeEEeCCCCHHHHH
Confidence 234677887765311 0456799999 89999999998876
Q ss_pred ccc
Q 003088 845 QLP 847 (849)
Q Consensus 845 ~I~ 847 (849)
+.+
T Consensus 185 ~~L 187 (546)
T PRK14957 185 DQL 187 (546)
T ss_pred HHH
Confidence 543
No 227
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.38 E-value=3.4e-12 Score=136.78 Aligned_cols=154 Identities=20% Similarity=0.292 Sum_probs=107.9
Q ss_pred cceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccccccCCCCCcc--c----cccCcchhHHHHhCCCeE
Q 003088 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYV--G----YEEGGLLTEAIRRRPFTL 734 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~v--g----~~~~~~l~~~i~~~~~~v 734 (849)
++||.||||||||++|+.+|+.+ +.+++++++..... ..+++|...-.+ | .-..+.+..+.+ .+++
T Consensus 66 ~ilL~G~pGtGKTtla~~lA~~l---~~~~~rV~~~~~l~---~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~--~g~i 137 (327)
T TIGR01650 66 RVMVQGYHGTGKSTHIEQIAARL---NWPCVRVNLDSHVS---RIDLVGKDAIVLKDGKQITEFRDGILPWALQ--HNVA 137 (327)
T ss_pred cEEEEeCCCChHHHHHHHHHHHH---CCCeEEEEecCCCC---hhhcCCCceeeccCCcceeEEecCcchhHHh--CCeE
Confidence 49999999999999999999998 67899999987754 445666532110 1 111345555543 3578
Q ss_pred EEEeCccccCHHHHHHHHHHhh-cCeeecC-CCcee-ecCCeEEEEecCCCchhhhcccCCccc-cccccCCcccHHhHH
Q 003088 735 LLLDEIEKAHPDIFNILLQVFE-DGHLTDS-HGRRV-SFKNALIVMTSNVGSTTIAKGRHGSIG-FLLEDNESTSYAGMK 810 (849)
Q Consensus 735 l~lDEid~l~~~~~~~Ll~~le-~g~~~~~-~g~~~-~~~~~~iI~tsn~~~~~l~~~~~~~~g-f~~~~~~~~~~~~~~ 810 (849)
|++||+|.++|++++.|..+|| ++.++.. .++.+ ..+++++|+|+|+--. +. .-| |...
T Consensus 138 lllDEin~a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~-----Gd-~~G~y~Gt----------- 200 (327)
T TIGR01650 138 LCFDEYDAGRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGL-----GD-TTGLYHGT----------- 200 (327)
T ss_pred EEechhhccCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCc-----CC-CCcceeee-----------
Confidence 9999999999999999999999 4677764 45666 4458999999997210 00 001 1110
Q ss_pred HHHHHHHHhhCChHHhhccccEEEcCCCCHHHHcccc
Q 003088 811 TLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQLP 847 (849)
Q Consensus 811 ~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~I~ 847 (849)
..+++.+++||-.++.+..+++++-.+|+
T Consensus 201 --------~~l~~A~lDRF~i~~~~~Yp~~e~E~~Il 229 (327)
T TIGR01650 201 --------QQINQAQMDRWSIVTTLNYLEHDNEAAIV 229 (327)
T ss_pred --------ecCCHHHHhheeeEeeCCCCCHHHHHHHH
Confidence 11789999999666678777777665554
No 228
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.38 E-value=1.4e-12 Score=148.81 Aligned_cols=170 Identities=22% Similarity=0.334 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHHhccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCC----ce
Q 003088 615 DERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSES----SM 690 (849)
Q Consensus 615 ~~~~~~~~l~~~l~~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~----~~ 690 (849)
.++.++..+ ++++||++++..|...+...+ ...++||+||||||||++|+++|+.+..... |+
T Consensus 5 ~~kyRP~~~-----~divGq~~i~~~L~~~i~~~~--------l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc 71 (472)
T PRK14962 5 YRKYRPKTF-----SEVVGQDHVKKLIINALKKNS--------ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPC 71 (472)
T ss_pred HHHHCCCCH-----HHccCcHHHHHHHHHHHHcCC--------CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCC
Confidence 344455444 559999999988887776432 1224899999999999999999998854221 11
Q ss_pred eEee-cccccccc--ccccccCCCCCccccccCcchhHHHHh----CCCeEEEEeCccccCHHHHHHHHHHhhcCeeecC
Q 003088 691 LRLD-MSEYMERH--TVSKLIGSPPGYVGYEEGGLLTEAIRR----RPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDS 763 (849)
Q Consensus 691 i~i~-~~~~~~~~--~~~~l~g~~~g~vg~~~~~~l~~~i~~----~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~ 763 (849)
-.++ |..+.... ....+-+ ....|.++...+.+.+.. ..+.||||||+|.++...++.|+..|++
T Consensus 72 ~~c~~c~~i~~g~~~dv~el~a--a~~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~------ 143 (472)
T PRK14962 72 NECRACRSIDEGTFMDVIELDA--ASNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEE------ 143 (472)
T ss_pred cccHHHHHHhcCCCCccEEEeC--cccCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHh------
Confidence 1110 00000000 0000100 011122111122222222 2357999999999999999999999987
Q ss_pred CCceeecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHHH
Q 003088 764 HGRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQV 843 (849)
Q Consensus 764 ~g~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~ 843 (849)
...+++||++++... .+.+.+.+|+ .++.|.|++.+++
T Consensus 144 -----p~~~vv~Ilattn~~------------------------------------kl~~~L~SR~-~vv~f~~l~~~el 181 (472)
T PRK14962 144 -----PPSHVVFVLATTNLE------------------------------------KVPPTIISRC-QVIEFRNISDELI 181 (472)
T ss_pred -----CCCcEEEEEEeCChH------------------------------------hhhHHHhcCc-EEEEECCccHHHH
Confidence 234677777766311 0567889999 6899999999887
Q ss_pred cccc
Q 003088 844 CQLP 847 (849)
Q Consensus 844 ~~I~ 847 (849)
..++
T Consensus 182 ~~~L 185 (472)
T PRK14962 182 IKRL 185 (472)
T ss_pred HHHH
Confidence 7654
No 229
>PHA02244 ATPase-like protein
Probab=99.38 E-value=8e-12 Score=135.06 Aligned_cols=168 Identities=15% Similarity=0.223 Sum_probs=112.3
Q ss_pred hccccccHHHHHHHHHHHHHh-hcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeecccccccccccc
Q 003088 628 KKRVIGQDEAVAAISRAVKRS-RVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSK 706 (849)
Q Consensus 628 ~~~i~Gq~~~i~~l~~~l~~~-~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~ 706 (849)
....+|.+..+......+.+. ..+. ++||+||||||||++|+++|..+ +.+|+.++. +.+ ...
T Consensus 95 d~~~ig~sp~~~~~~~ri~r~l~~~~--------PVLL~GppGtGKTtLA~aLA~~l---g~pfv~In~--l~d---~~~ 158 (383)
T PHA02244 95 DTTKIASNPTFHYETADIAKIVNANI--------PVFLKGGAGSGKNHIAEQIAEAL---DLDFYFMNA--IMD---EFE 158 (383)
T ss_pred CCcccCCCHHHHHHHHHHHHHHhcCC--------CEEEECCCCCCHHHHHHHHHHHh---CCCEEEEec--ChH---HHh
Confidence 345677777776555555432 2222 29999999999999999999986 567888873 221 222
Q ss_pred ccCCCCCccccccCcchhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCchhh
Q 003088 707 LIGSPPGYVGYEEGGLLTEAIRRRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTI 786 (849)
Q Consensus 707 l~g~~~g~vg~~~~~~l~~~i~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l 786 (849)
++|...+ .|.-..+.+..++ ..+++|||||++.++++++..|..+++++.+...++.....+++++|+|+|......
T Consensus 159 L~G~i~~-~g~~~dgpLl~A~--~~GgvLiLDEId~a~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~ 235 (383)
T PHA02244 159 LKGFIDA-NGKFHETPFYEAF--KKGGLFFIDEIDASIPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGA 235 (383)
T ss_pred hcccccc-cccccchHHHHHh--hcCCEEEEeCcCcCCHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCc
Confidence 3332111 1111224455554 356799999999999999999999999988777666655667999999999842110
Q ss_pred hcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCH
Q 003088 787 AKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEK 840 (849)
Q Consensus 787 ~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~ 840 (849)
. -.|.. .+.+.+++++|| ..|.|..+++
T Consensus 236 ~------~~y~G-------------------~k~L~~AllDRF-v~I~~dyp~~ 263 (383)
T PHA02244 236 D------HIYVA-------------------RNKIDGATLDRF-APIEFDYDEK 263 (383)
T ss_pred c------cccCC-------------------CcccCHHHHhhc-EEeeCCCCcH
Confidence 0 00101 112789999999 6788877764
No 230
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.38 E-value=1.2e-12 Score=152.39 Aligned_cols=162 Identities=21% Similarity=0.291 Sum_probs=103.7
Q ss_pred ccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCC---------ceeEe-ecccc
Q 003088 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSES---------SMLRL-DMSEY 698 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~---------~~i~i-~~~~~ 698 (849)
++|+||+.+++.|.+.+...+. ...+||+||+|||||++|+++|+.+++.+. ++-.+ .|..+
T Consensus 16 ~dviGQe~vv~~L~~~l~~~rl--------~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i 87 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQRL--------HHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDI 87 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC--------CeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHH
Confidence 5589999999999998876421 123799999999999999999999864211 11111 12222
Q ss_pred ccccccccccC-CCCCccccccCcchhHHHHhC----CCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCe
Q 003088 699 MERHTVSKLIG-SPPGYVGYEEGGLLTEAIRRR----PFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNA 773 (849)
Q Consensus 699 ~~~~~~~~l~g-~~~g~vg~~~~~~l~~~i~~~----~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~ 773 (849)
...... .++- .+....|.++...+.+.+... .+.|++|||+|.|+...+|.|++.||+ ...++
T Consensus 88 ~~g~h~-D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEE-----------PP~~~ 155 (618)
T PRK14951 88 DSGRFV-DYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEE-----------PPEYL 155 (618)
T ss_pred HcCCCC-ceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhccc-----------CCCCe
Confidence 111111 1110 011112222222222333222 367999999999999999999999998 33577
Q ss_pred EEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHHHcccc
Q 003088 774 LIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQLP 847 (849)
Q Consensus 774 ~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~I~ 847 (849)
+||++|+.... +.+.+++|| ..+.|.+++.+++.+.+
T Consensus 156 ~fIL~Ttd~~k------------------------------------il~TIlSRc-~~~~f~~Ls~eei~~~L 192 (618)
T PRK14951 156 KFVLATTDPQK------------------------------------VPVTVLSRC-LQFNLRPMAPETVLEHL 192 (618)
T ss_pred EEEEEECCchh------------------------------------hhHHHHHhc-eeeecCCCCHHHHHHHH
Confidence 88887764211 456688888 88899999988876544
No 231
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.38 E-value=1.6e-12 Score=124.79 Aligned_cols=114 Identities=33% Similarity=0.531 Sum_probs=77.7
Q ss_pred cceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccccccCCCC---CccccccCcchhHHHHhCCCeEEEE
Q 003088 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPP---GYVGYEEGGLLTEAIRRRPFTLLLL 737 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~---g~vg~~~~~~l~~~i~~~~~~vl~l 737 (849)
+|||+||||||||++|+.+++.+ +.++..+.++...+. .+++|... +...+. .+.+..+++ .++++||
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~---~~~~~~i~~~~~~~~---~dl~g~~~~~~~~~~~~-~~~l~~a~~--~~~il~l 71 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALL---GRPVIRINCSSDTTE---EDLIGSYDPSNGQFEFK-DGPLVRAMR--KGGILVL 71 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH---TCEEEEEE-TTTSTH---HHHHCEEET-TTTTCEE-E-CCCTTHH--EEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHh---hcceEEEEecccccc---ccceeeeeecccccccc-ccccccccc--ceeEEEE
Confidence 38999999999999999999998 667888888876553 34444311 111111 223343333 4679999
Q ss_pred eCccccCHHHHHHHHHHhhcCeeecCC-CceeecC-------CeEEEEecCCCc
Q 003088 738 DEIEKAHPDIFNILLQVFEDGHLTDSH-GRRVSFK-------NALIVMTSNVGS 783 (849)
Q Consensus 738 DEid~l~~~~~~~Ll~~le~g~~~~~~-g~~~~~~-------~~~iI~tsn~~~ 783 (849)
||++++++++++.|+.+++++.+.... +...... +++||+|+|...
T Consensus 72 DEin~a~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~ 125 (139)
T PF07728_consen 72 DEINRAPPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRD 125 (139)
T ss_dssp SSCGG--HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST
T ss_pred CCcccCCHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCC
Confidence 999999999999999999999877443 2233232 399999999854
No 232
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=1.3e-12 Score=135.73 Aligned_cols=76 Identities=33% Similarity=0.592 Sum_probs=58.8
Q ss_pred HHHHHHHHhccccccHHHHHHHHHHHHHh--hcCCCCC----CCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEe
Q 003088 620 LVGLEEQLKKRVIGQDEAVAAISRAVKRS--RVGLKDP----NRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRL 693 (849)
Q Consensus 620 ~~~l~~~l~~~i~Gq~~~i~~l~~~l~~~--~~g~~~~----~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i 693 (849)
+.++-..|.+.|+||+++++.+.-+++.. +..+..+ -.| -|+|+.||+|+|||++||.||+.. +.||+.+
T Consensus 6 PreIV~eLd~yIIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~P-KNILMIGpTGVGKTEIARRLAkl~---~aPFiKV 81 (444)
T COG1220 6 PREIVSELDRYIIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTP-KNILMIGPTGVGKTEIARRLAKLA---GAPFIKV 81 (444)
T ss_pred HHHHHHHHHhHhcCcHHHHHHHHHHHHHHHHHHhcCHHHhhccCc-cceEEECCCCCcHHHHHHHHHHHh---CCCeEEE
Confidence 45566778889999999999999888643 2222211 223 369999999999999999999985 8899999
Q ss_pred eccccc
Q 003088 694 DMSEYM 699 (849)
Q Consensus 694 ~~~~~~ 699 (849)
..+.+.
T Consensus 82 EATKfT 87 (444)
T COG1220 82 EATKFT 87 (444)
T ss_pred Eeeeee
Confidence 887654
No 233
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.37 E-value=1.3e-12 Score=146.80 Aligned_cols=159 Identities=25% Similarity=0.396 Sum_probs=106.5
Q ss_pred ccccccHHHHHHHHHHHHHh--------hcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeecccccc
Q 003088 629 KRVIGQDEAVAAISRAVKRS--------RVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYME 700 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~~--------~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~ 700 (849)
+.|.|.+..++.+...+... ..|+..| .++||+||||||||++|+++|..+ ..+|+.+.++++..
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p----~gVLL~GPPGTGKT~LAraIA~el---~~~fi~V~~seL~~ 255 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPP----KGVILYGPPGTGKTLLAKAVANET---SATFLRVVGSELIQ 255 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCC----cEEEEECCCCCCHHHHHHHHHHhh---CCCEEEEecchhhh
Confidence 34688888888888877532 2233322 349999999999999999999986 45688887766543
Q ss_pred ccccccccCCCCCccccccC--cchhHHHHhCCCeEEEEeCccccC-----------HHHHHHHHHHhhcCeeecCCCce
Q 003088 701 RHTVSKLIGSPPGYVGYEEG--GLLTEAIRRRPFTLLLLDEIEKAH-----------PDIFNILLQVFEDGHLTDSHGRR 767 (849)
Q Consensus 701 ~~~~~~l~g~~~g~vg~~~~--~~l~~~i~~~~~~vl~lDEid~l~-----------~~~~~~Ll~~le~g~~~~~~g~~ 767 (849)
. |+|..+. ..++.......++||||||||.+. .+++..|+++|..-.-.+
T Consensus 256 k------------~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~----- 318 (438)
T PTZ00361 256 K------------YLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFD----- 318 (438)
T ss_pred h------------hcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhc-----
Confidence 1 3443321 122233344456899999999763 234555555543210000
Q ss_pred eecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHh--hccccEEEcCCCCHHHHcc
Q 003088 768 VSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELL--NRIDEVVVFRSLEKAQVCQ 845 (849)
Q Consensus 768 ~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell--~R~d~~i~f~pl~~~~~~~ 845 (849)
...+++||++||... .++|.++ .|||..|.|++++.++..+
T Consensus 319 -~~~~V~VI~ATNr~d------------------------------------~LDpaLlRpGRfd~~I~~~~Pd~~~R~~ 361 (438)
T PTZ00361 319 -SRGDVKVIMATNRIE------------------------------------SLDPALIRPGRIDRKIEFPNPDEKTKRR 361 (438)
T ss_pred -ccCCeEEEEecCChH------------------------------------HhhHHhccCCeeEEEEEeCCCCHHHHHH
Confidence 123688999999631 1678887 5999999999999999888
Q ss_pred ccC
Q 003088 846 LPL 848 (849)
Q Consensus 846 I~~ 848 (849)
|++
T Consensus 362 Il~ 364 (438)
T PTZ00361 362 IFE 364 (438)
T ss_pred HHH
Confidence 875
No 234
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.37 E-value=1.6e-11 Score=139.98 Aligned_cols=200 Identities=19% Similarity=0.182 Sum_probs=125.3
Q ss_pred cCCCCcc-ccHHH--HHHHHHHHhcC--CCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhccc
Q 003088 287 ELIDPVI-GRETE--IQRIIQILCRR--TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGA 361 (849)
Q Consensus 287 ~~l~~ii-G~~~~--i~~l~~~l~~~--~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~~~ 361 (849)
.+|+.++ |..+. ...+..+.... ..++++|+|++|+|||+|++++++.+.... .+..++.++...+...-
T Consensus 112 ~tFdnFv~g~~n~~A~~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~-----~~~~v~yv~~~~f~~~~ 186 (450)
T PRK14087 112 NTFENFVIGSSNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNF-----SDLKVSYMSGDEFARKA 186 (450)
T ss_pred cchhcccCCCcHHHHHHHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHHHHHHhC-----CCCeEEEEEHHHHHHHH
Confidence 3566654 65443 23333333322 235688999999999999999999875421 14666777665544211
Q ss_pred cccchHH---HHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCCCeEEEEccChHHHHHH
Q 003088 362 KERGELE---ARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438 (849)
Q Consensus 362 ~~~g~~e---~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~~i~vI~at~~~~~~~~ 438 (849)
...+. ..+..+.+..+ ...+|+|||++.+.+.. .....+..++....+.+..++|.+...++. .
T Consensus 187 --~~~l~~~~~~~~~~~~~~~--~~dvLiIDDiq~l~~k~-------~~~e~lf~l~N~~~~~~k~iIltsd~~P~~--l 253 (450)
T PRK14087 187 --VDILQKTHKEIEQFKNEIC--QNDVLIIDDVQFLSYKE-------KTNEIFFTIFNNFIENDKQLFFSSDKSPEL--L 253 (450)
T ss_pred --HHHHHHhhhHHHHHHHHhc--cCCEEEEeccccccCCH-------HHHHHHHHHHHHHHHcCCcEEEECCCCHHH--H
Confidence 11111 11222222222 33599999999993211 123456666776667776555555444432 2
Q ss_pred hhccHHHHhccc---cEEecCCCHHHHHHHHHHHHHHHHhhcC--CccCHHHHHHHHHhhhcccccCcchhhHHHHHHHH
Q 003088 439 FEKDKALARRFQ---PVLISEPSQEDAVRILLGLREKYEAHHN--CKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEA 513 (849)
Q Consensus 439 ~~~d~al~~Rf~---~i~~~~ps~~e~~~iL~~~~~~~~~~~~--~~i~~~~l~~~a~ls~~~~~~r~~p~~ai~ll~~a 513 (849)
-.+++.|.+||. .+.+.+|+.+++.+||+..++. .+ +.++++++..++..+.+.+ ..+..+++..
T Consensus 254 ~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~----~gl~~~l~~evl~~Ia~~~~gd~------R~L~gaL~~l 323 (450)
T PRK14087 254 NGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKN----QNIKQEVTEEAINFISNYYSDDV------RKIKGSVSRL 323 (450)
T ss_pred hhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHHh----cCCCCCCCHHHHHHHHHccCCCH------HHHHHHHHHH
Confidence 246799999996 5999999999999999987763 34 3799999999998887643 3444555444
Q ss_pred h
Q 003088 514 G 514 (849)
Q Consensus 514 ~ 514 (849)
.
T Consensus 324 ~ 324 (450)
T PRK14087 324 N 324 (450)
T ss_pred H
Confidence 3
No 235
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.37 E-value=1e-12 Score=151.94 Aligned_cols=172 Identities=24% Similarity=0.341 Sum_probs=109.0
Q ss_pred CHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCC----C
Q 003088 613 TADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSE----S 688 (849)
Q Consensus 613 ~~~~~~~~~~l~~~l~~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~----~ 688 (849)
.+.+++++..+ ++|+||+.+++.|.+++...+. ..++||+||+|||||++|+.+|+.++... .
T Consensus 5 ~la~KyRP~sf-----~dIiGQe~v~~~L~~ai~~~ri--------~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~ 71 (624)
T PRK14959 5 SLTARYRPQTF-----AEVAGQETVKAILSRAAQENRV--------APAYLFSGTRGVGKTTIARIFAKALNCETAPTGE 71 (624)
T ss_pred hHHHHhCCCCH-----HHhcCCHHHHHHHHHHHHcCCC--------CceEEEECCCCCCHHHHHHHHHHhccccCCCCCC
Confidence 34555555555 4589999999999888875321 13499999999999999999999985421 1
Q ss_pred ceeEe-ecccccccccc--ccccCCCCCccccccCcchhHHHHh----CCCeEEEEeCccccCHHHHHHHHHHhhcCeee
Q 003088 689 SMLRL-DMSEYMERHTV--SKLIGSPPGYVGYEEGGLLTEAIRR----RPFTLLLLDEIEKAHPDIFNILLQVFEDGHLT 761 (849)
Q Consensus 689 ~~i~i-~~~~~~~~~~~--~~l~g~~~g~vg~~~~~~l~~~i~~----~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~ 761 (849)
++-.+ .|..+...... ..+-+. ...|.+....+.+.+.. ..+.||||||+|.++...+|.|++.||+
T Consensus 72 pCg~C~sC~~i~~g~hpDv~eId~a--~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEE---- 145 (624)
T PRK14959 72 PCNTCEQCRKVTQGMHVDVVEIDGA--SNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEE---- 145 (624)
T ss_pred CCcccHHHHHHhcCCCCceEEEecc--cccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhc----
Confidence 11111 01111110000 011110 11222222223333332 3467999999999999999999999998
Q ss_pred cCCCceeecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHH
Q 003088 762 DSHGRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKA 841 (849)
Q Consensus 762 ~~~g~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~ 841 (849)
...+++||++||.... +.+.|.+|| .++.|.+++.+
T Consensus 146 -------P~~~~ifILaTt~~~k------------------------------------ll~TI~SRc-q~i~F~pLs~~ 181 (624)
T PRK14959 146 -------PPARVTFVLATTEPHK------------------------------------FPVTIVSRC-QHFTFTRLSEA 181 (624)
T ss_pred -------cCCCEEEEEecCChhh------------------------------------hhHHHHhhh-hccccCCCCHH
Confidence 2346788888774211 456788888 67889999988
Q ss_pred HHcccc
Q 003088 842 QVCQLP 847 (849)
Q Consensus 842 ~~~~I~ 847 (849)
++.+++
T Consensus 182 eL~~~L 187 (624)
T PRK14959 182 GLEAHL 187 (624)
T ss_pred HHHHHH
Confidence 887654
No 236
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.37 E-value=1.5e-12 Score=141.74 Aligned_cols=175 Identities=18% Similarity=0.227 Sum_probs=108.7
Q ss_pred hccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCC----CceeEeecc-------
Q 003088 628 KKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSE----SSMLRLDMS------- 696 (849)
Q Consensus 628 ~~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~----~~~i~i~~~------- 696 (849)
+..|+||++++..+..++.... .+.+||.|++|||||++|+.+++.+...+ .+|. .+..
T Consensus 16 f~~ivGq~~~k~al~~~~~~p~---------~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~-~~p~~p~~~~~ 85 (350)
T CHL00081 16 FTAIVGQEEMKLALILNVIDPK---------IGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFN-SHPSDPELMSD 85 (350)
T ss_pred HHHHhChHHHHHHHHHhccCCC---------CCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCC-CCCCChhhhch
Confidence 3679999999988876665422 24599999999999999999999874311 2232 0000
Q ss_pred ----------------------ccccccccccccCCCC--CccccccCcchhHHHHhCCCeEEEEeCccccCHHHHHHHH
Q 003088 697 ----------------------EYMERHTVSKLIGSPP--GYVGYEEGGLLTEAIRRRPFTLLLLDEIEKAHPDIFNILL 752 (849)
Q Consensus 697 ----------------------~~~~~~~~~~l~g~~~--g~vg~~~~~~l~~~i~~~~~~vl~lDEid~l~~~~~~~Ll 752 (849)
++....+.+.++|.-. ............+.+.++.+++||+|||+.+++.+|+.|+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~~~Q~~LL 165 (350)
T CHL00081 86 EVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDILL 165 (350)
T ss_pred hhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCHHHHHHHH
Confidence 0000111222333100 0000000000122344567899999999999999999999
Q ss_pred HHhhcCeeecC-CCceeec-CCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccc
Q 003088 753 QVFEDGHLTDS-HGRRVSF-KNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRID 830 (849)
Q Consensus 753 ~~le~g~~~~~-~g~~~~~-~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d 830 (849)
++|++|..+.. .|..... .++++|+|.|+.. + .|+++|++||.
T Consensus 166 eam~e~~~~ier~G~s~~~p~rfiviaT~np~e------g-----------------------------~l~~~LldRf~ 210 (350)
T CHL00081 166 DSAASGWNTVEREGISIRHPARFVLVGSGNPEE------G-----------------------------ELRPQLLDRFG 210 (350)
T ss_pred HHHHhCCeEEeeCCeeeecCCCEEEEeccCccc------C-----------------------------CCCHHHHHHhC
Confidence 99999765432 2433333 3778888888631 1 18899999999
Q ss_pred cEEEcCCCC-HHHHcccc
Q 003088 831 EVVVFRSLE-KAQVCQLP 847 (849)
Q Consensus 831 ~~i~f~pl~-~~~~~~I~ 847 (849)
..+.+..++ .+.-.+|+
T Consensus 211 l~i~l~~~~~~~~e~~il 228 (350)
T CHL00081 211 MHAEIRTVKDPELRVKIV 228 (350)
T ss_pred ceeecCCCCChHHHHHHH
Confidence 888888776 35444443
No 237
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.36 E-value=1e-11 Score=135.97 Aligned_cols=174 Identities=17% Similarity=0.210 Sum_probs=122.7
Q ss_pred CCCCccccHHHHHHHHHHHhcCCCCCC-eEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhccccccch
Q 003088 288 LIDPVIGRETEIQRIIQILCRRTKNNP-ILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGE 366 (849)
Q Consensus 288 ~l~~iiG~~~~i~~l~~~l~~~~~~ni-LL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~~~~~~g~ 366 (849)
.|++++|++..++.+...+..++.+|. ||+||+|+|||++|+.+|+.+.+...... ...++.+... .+. ..
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~--h~D~~~~~~~---~~~-~i-- 73 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQRE--YVDIIEFKPI---NKK-SI-- 73 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCC--CCCeEEeccc---cCC-CC--
Confidence 478999999999999999988877777 89999999999999999999865432211 1122222110 111 11
Q ss_pred HHHHHHHHHHHHHh----cCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCC--CeEEEEccChHHHHHHhh
Q 003088 367 LEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG--ELQCIASTTQDEHRTQFE 440 (849)
Q Consensus 367 ~e~~l~~l~~~~~~----~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~--~i~vI~at~~~~~~~~~~ 440 (849)
..+.++++.+.+.. ++..|++||++|.+ +..++|.|+..||++ ...+|.+|+..+ .
T Consensus 74 ~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m-------------~~~a~naLLK~LEepp~~t~~il~~~~~~-----~ 135 (313)
T PRK05564 74 GVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKM-------------TEQAQNAFLKTIEEPPKGVFIILLCENLE-----Q 135 (313)
T ss_pred CHHHHHHHHHHHhcCcccCCceEEEEechhhc-------------CHHHHHHHHHHhcCCCCCeEEEEEeCChH-----h
Confidence 12235555554432 45679999999999 567899999999963 345555555444 7
Q ss_pred ccHHHHhccccEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhc
Q 003088 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495 (849)
Q Consensus 441 ~d~al~~Rf~~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~ 495 (849)
+-+.+++||+.+.|.+|+.++....|..... .++++.+..++.++.+
T Consensus 136 ll~TI~SRc~~~~~~~~~~~~~~~~l~~~~~--------~~~~~~~~~l~~~~~g 182 (313)
T PRK05564 136 ILDTIKSRCQIYKLNRLSKEEIEKFISYKYN--------DIKEEEKKSAIAFSDG 182 (313)
T ss_pred CcHHHHhhceeeeCCCcCHHHHHHHHHHHhc--------CCCHHHHHHHHHHcCC
Confidence 7899999999999999999998877754321 4567777766666654
No 238
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.36 E-value=3e-12 Score=145.39 Aligned_cols=143 Identities=24% Similarity=0.399 Sum_probs=99.1
Q ss_pred ccccccHHHHHH---HHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccc
Q 003088 629 KRVIGQDEAVAA---ISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVS 705 (849)
Q Consensus 629 ~~i~Gq~~~i~~---l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~ 705 (849)
++++||++++.. +...+... ...+++|+||||||||++|+++++.+ +..|+.+++...... .+
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~---------~~~~ilL~GppGtGKTtLA~~ia~~~---~~~~~~l~a~~~~~~-~i- 77 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAG---------RLSSMILWGPPGTGKTTLARIIAGAT---DAPFEALSAVTSGVK-DL- 77 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcC---------CCceEEEECCCCCCHHHHHHHHHHHh---CCCEEEEecccccHH-HH-
Confidence 458999998766 66666432 11359999999999999999999986 456777776432110 00
Q ss_pred cccCCCCCccccccCcchhHH---HHhCCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCC
Q 003088 706 KLIGSPPGYVGYEEGGLLTEA---IRRRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVG 782 (849)
Q Consensus 706 ~l~g~~~g~vg~~~~~~l~~~---i~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~ 782 (849)
...+..+ .....+.||||||||.++...|+.|+..++++. +++|.+++..
T Consensus 78 --------------r~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~~~-------------iilI~att~n 130 (413)
T PRK13342 78 --------------REVIEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVEDGT-------------ITLIGATTEN 130 (413)
T ss_pred --------------HHHHHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhcCc-------------EEEEEeCCCC
Confidence 0111111 112256799999999999999999999998743 4566555432
Q ss_pred chhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHHHcccc
Q 003088 783 STTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQLP 847 (849)
Q Consensus 783 ~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~I~ 847 (849)
+. ..+.+.|++|| .++.|.|++.+++..++
T Consensus 131 ~~----------------------------------~~l~~aL~SR~-~~~~~~~ls~e~i~~lL 160 (413)
T PRK13342 131 PS----------------------------------FEVNPALLSRA-QVFELKPLSEEDIEQLL 160 (413)
T ss_pred hh----------------------------------hhccHHHhccc-eeeEeCCCCHHHHHHHH
Confidence 11 01678899999 78899999999887765
No 239
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.36 E-value=1.6e-11 Score=145.20 Aligned_cols=175 Identities=22% Similarity=0.315 Sum_probs=112.7
Q ss_pred ccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcC-------CCCceeEeeccccccc
Q 003088 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFG-------SESSMLRLDMSEYMER 701 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~-------~~~~~i~i~~~~~~~~ 701 (849)
+.++||+.++..+...+... . ..+++|+||||||||++|+.++..... .+.+|+.++|..+...
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~---~------~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d 224 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASP---F------PQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWD 224 (615)
T ss_pred HhceeCcHHHHHHHHHHhcC---C------CCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCC
Confidence 56899999999876555321 1 124999999999999999999987621 2467999999765311
Q ss_pred --cccccccCCCCC--ccccc-------cCcchhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCC-----
Q 003088 702 --HTVSKLIGSPPG--YVGYE-------EGGLLTEAIRRRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHG----- 765 (849)
Q Consensus 702 --~~~~~l~g~~~g--~vg~~-------~~~~l~~~i~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g----- 765 (849)
.....++|.... +.+.. ......+.+....+++|||||++.+++..|+.|+++|+++.+....+
T Consensus 225 ~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~ 304 (615)
T TIGR02903 225 PREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPD 304 (615)
T ss_pred HHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccC
Confidence 011123332110 00000 00111223445667899999999999999999999999987532111
Q ss_pred -ce-----------eecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEE
Q 003088 766 -RR-----------VSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVV 833 (849)
Q Consensus 766 -~~-----------~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i 833 (849)
.. ....++++|++|+..+.. +.+.|.+||. .+
T Consensus 305 ~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~-----------------------------------l~~aLrSR~~-~i 348 (615)
T TIGR02903 305 DPNVPKYIKKLFEEGAPADFVLIGATTRDPEE-----------------------------------INPALRSRCA-EV 348 (615)
T ss_pred CcccchhhhhhcccCccceEEEEEeccccccc-----------------------------------cCHHHHhcee-EE
Confidence 00 012246666655542211 5688999995 67
Q ss_pred EcCCCCHHHHccccC
Q 003088 834 VFRSLEKAQVCQLPL 848 (849)
Q Consensus 834 ~f~pl~~~~~~~I~~ 848 (849)
.|+|++.+++.+|++
T Consensus 349 ~~~pls~edi~~Il~ 363 (615)
T TIGR02903 349 FFEPLTPEDIALIVL 363 (615)
T ss_pred EeCCCCHHHHHHHHH
Confidence 899999999988764
No 240
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.36 E-value=2.8e-11 Score=134.77 Aligned_cols=193 Identities=22% Similarity=0.286 Sum_probs=125.7
Q ss_pred CccccHHHHHHHHHHHhc-----------C-------CCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEe
Q 003088 291 PVIGRETEIQRIIQILCR-----------R-------TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSL 352 (849)
Q Consensus 291 ~iiG~~~~i~~l~~~l~~-----------~-------~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l 352 (849)
.+||+++.++.+...+++ . .+.|+||+||||||||++|++||..+ +.++..+
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l----------~~pf~~~ 147 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARIL----------NVPFAIA 147 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhc----------CCCeEEe
Confidence 479999999988776621 1 13589999999999999999999887 3445555
Q ss_pred ehhhhhccccccch-HHHHHHHHHHH----HHhcCCeEEEEcCcchhhhCCCCCCCC-CCccHHHHHHHhhhhcC-----
Q 003088 353 DMGLLMAGAKERGE-LEARVTTLISE----IQKSGDVILFIDEVHTLIGSGTVGRGN-KGTGLDISNLLKPSLGR----- 421 (849)
Q Consensus 353 ~~~~~~~~~~~~g~-~e~~l~~l~~~----~~~~~~~ILfIDEi~~l~~~~~~~~~~-~~~~~~~~~~L~~~le~----- 421 (849)
+...+. ...+.|. .+..+..+++. +....++||||||+|.+.+........ ..++..+++.|+.+|+.
T Consensus 148 da~~L~-~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v 226 (413)
T TIGR00382 148 DATTLT-EAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANV 226 (413)
T ss_pred chhhcc-ccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceec
Confidence 555443 2235554 44445554442 234556799999999997643221100 12234688888888851
Q ss_pred ----------CCeEEEEccCh--------H-----------------------------HHHH--------HhhccHHHH
Q 003088 422 ----------GELQCIASTTQ--------D-----------------------------EHRT--------QFEKDKALA 446 (849)
Q Consensus 422 ----------~~i~vI~at~~--------~-----------------------------~~~~--------~~~~d~al~ 446 (849)
.+.++|.|+|- . ++.+ .+.+.|+|.
T Consensus 227 ~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEfl 306 (413)
T TIGR00382 227 PPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFI 306 (413)
T ss_pred ccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHh
Confidence 11345555543 0 0000 112458889
Q ss_pred hccc-cEEecCCCHHHHHHHHHH----HHHHHHh-----hcCCccCHHHHHHHHHhhh
Q 003088 447 RRFQ-PVLISEPSQEDAVRILLG----LREKYEA-----HHNCKFTLEAINAAVHLSA 494 (849)
Q Consensus 447 ~Rf~-~i~~~~ps~~e~~~iL~~----~~~~~~~-----~~~~~i~~~~l~~~a~ls~ 494 (849)
.|++ .+.|.+++.+++.+|+.. +.++|.. ...+.+++++++.+++.+.
T Consensus 307 gRld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~ 364 (413)
T TIGR00382 307 GRLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKAL 364 (413)
T ss_pred CCCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCC
Confidence 9997 578899999999999986 4555543 2346789999999988753
No 241
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=4.1e-12 Score=131.32 Aligned_cols=152 Identities=22% Similarity=0.302 Sum_probs=111.6
Q ss_pred CeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhccccccchHHHHHHHHHHHHHh---cCC--eEEEE
Q 003088 314 PILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK---SGD--VILFI 388 (849)
Q Consensus 314 iLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~~~~~~g~~e~~l~~l~~~~~~---~~~--~ILfI 388 (849)
+||+||||||||+++++||+.+.-. ....+....+++++..++. .+|-++.-+.+..+|+.+.+ ..+ +.++|
T Consensus 180 iLlhGPPGTGKTSLCKaLaQkLSIR-~~~~y~~~~liEinshsLF--SKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLI 256 (423)
T KOG0744|consen 180 ILLHGPPGTGKTSLCKALAQKLSIR-TNDRYYKGQLIEINSHSLF--SKWFSESGKLVAKMFQKIQELVEDRGNLVFVLI 256 (423)
T ss_pred EEEeCCCCCChhHHHHHHHHhheee-ecCccccceEEEEehhHHH--HHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 5899999999999999999998422 1122335678888887776 56667766777777766553 222 56779
Q ss_pred cCcchhhhCCCCCCCC--CCccHHHHHHHhhhhc----CCCeEEEEccChHHHHHHhhccHHHHhccc-cEEecCCCHHH
Q 003088 389 DEVHTLIGSGTVGRGN--KGTGLDISNLLKPSLG----RGELQCIASTTQDEHRTQFEKDKALARRFQ-PVLISEPSQED 461 (849)
Q Consensus 389 DEi~~l~~~~~~~~~~--~~~~~~~~~~L~~~le----~~~i~vI~at~~~~~~~~~~~d~al~~Rf~-~i~~~~ps~~e 461 (849)
||++.|..++....+. ...+..+.|.++..++ ..++.+.+|+|-.+ .+|.||..|-+ +.++.+|+...
T Consensus 257 DEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~-----siD~AfVDRADi~~yVG~Pt~~a 331 (423)
T KOG0744|consen 257 DEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTD-----SIDVAFVDRADIVFYVGPPTAEA 331 (423)
T ss_pred HHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHH-----HHHHHhhhHhhheeecCCccHHH
Confidence 9999997654221111 1234567888887776 35677777777776 89999999998 79999999999
Q ss_pred HHHHHHHHHHHH
Q 003088 462 AVRILLGLREKY 473 (849)
Q Consensus 462 ~~~iL~~~~~~~ 473 (849)
+.+|++...+.+
T Consensus 332 i~~IlkscieEL 343 (423)
T KOG0744|consen 332 IYEILKSCIEEL 343 (423)
T ss_pred HHHHHHHHHHHH
Confidence 999999876643
No 242
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.35 E-value=2.7e-12 Score=143.56 Aligned_cols=159 Identities=23% Similarity=0.382 Sum_probs=106.9
Q ss_pred ccccccHHHHHHHHHHHHHh--------hcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeecccccc
Q 003088 629 KRVIGQDEAVAAISRAVKRS--------RVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYME 700 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~~--------~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~ 700 (849)
+.+.|.++.++.+...+... ..|... ..++||+||||||||++|+++++.+ +.+|+.+.++++..
T Consensus 122 ~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~----p~gvLL~GppGtGKT~lakaia~~l---~~~~~~v~~~~l~~ 194 (364)
T TIGR01242 122 EDIGGLEEQIREIREAVELPLKHPELFEEVGIEP----PKGVLLYGPPGTGKTLLAKAVAHET---NATFIRVVGSELVR 194 (364)
T ss_pred HHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCC----CceEEEECCCCCCHHHHHHHHHHhC---CCCEEecchHHHHH
Confidence 56899999999998887542 123322 2349999999999999999999986 45677776655432
Q ss_pred ccccccccCCCCCccccccC--cchhHHHHhCCCeEEEEeCcccc-----------CHHHHHHHHHHhhcCeeecCCCce
Q 003088 701 RHTVSKLIGSPPGYVGYEEG--GLLTEAIRRRPFTLLLLDEIEKA-----------HPDIFNILLQVFEDGHLTDSHGRR 767 (849)
Q Consensus 701 ~~~~~~l~g~~~g~vg~~~~--~~l~~~i~~~~~~vl~lDEid~l-----------~~~~~~~Ll~~le~g~~~~~~g~~ 767 (849)
. |+|.... ..+....+...++||||||+|.+ ++.++..|++++..-.-.+
T Consensus 195 ~------------~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~----- 257 (364)
T TIGR01242 195 K------------YIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFD----- 257 (364)
T ss_pred H------------hhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCC-----
Confidence 1 2332211 12223334445689999999987 3456666666664311000
Q ss_pred eecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHh--hccccEEEcCCCCHHHHcc
Q 003088 768 VSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELL--NRIDEVVVFRSLEKAQVCQ 845 (849)
Q Consensus 768 ~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell--~R~d~~i~f~pl~~~~~~~ 845 (849)
...+++||+|||.... +++.++ .|||..|.|++++.++..+
T Consensus 258 -~~~~v~vI~ttn~~~~------------------------------------ld~al~r~grfd~~i~v~~P~~~~r~~ 300 (364)
T TIGR01242 258 -PRGNVKVIAATNRPDI------------------------------------LDPALLRPGRFDRIIEVPLPDFEGRLE 300 (364)
T ss_pred -CCCCEEEEEecCChhh------------------------------------CChhhcCcccCceEEEeCCcCHHHHHH
Confidence 1247889999996311 667777 4999999999999998888
Q ss_pred ccC
Q 003088 846 LPL 848 (849)
Q Consensus 846 I~~ 848 (849)
|++
T Consensus 301 Il~ 303 (364)
T TIGR01242 301 ILK 303 (364)
T ss_pred HHH
Confidence 764
No 243
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.34 E-value=2.2e-11 Score=130.14 Aligned_cols=97 Identities=20% Similarity=0.227 Sum_probs=70.3
Q ss_pred CeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCCC-eEEEEccChH-------HHHHHhhccHHHHhccccEEe
Q 003088 383 DVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGE-LQCIASTTQD-------EHRTQFEKDKALARRFQPVLI 454 (849)
Q Consensus 383 ~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~~-i~vI~at~~~-------~~~~~~~~d~al~~Rf~~i~~ 454 (849)
|+||||||+|.| +.+....|...+|..- -++|.|||.- +|..-..+...|+.|+-.|..
T Consensus 279 pGVLFIDEvHmL-------------DiEcFsfLnralEs~~sPiiIlATNRg~~~irGt~~~sphGiP~DlLDRllII~t 345 (398)
T PF06068_consen 279 PGVLFIDEVHML-------------DIECFSFLNRALESELSPIIILATNRGITKIRGTDIISPHGIPLDLLDRLLIIRT 345 (398)
T ss_dssp E-EEEEESGGGS-------------BHHHHHHHHHHHTSTT--EEEEEES-SEEE-BTTS-EEETT--HHHHTTEEEEEE
T ss_pred cceEEecchhhc-------------cHHHHHHHHHHhcCCCCcEEEEecCceeeeccCccCcCCCCCCcchHhhcEEEEC
Confidence 679999999999 7889999999999653 4667777732 233345677899999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhcc
Q 003088 455 SEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496 (849)
Q Consensus 455 ~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~ 496 (849)
.+++.+|..+|++-.++ ..++.++++++..+..++...
T Consensus 346 ~py~~~ei~~Il~iR~~----~E~v~i~~~al~~L~~ig~~~ 383 (398)
T PF06068_consen 346 KPYSEEEIKQILKIRAK----EEDVEISEDALDLLTKIGVET 383 (398)
T ss_dssp ----HHHHHHHHHHHHH----HCT--B-HHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHhhhh----hhcCcCCHHHHHHHHHHhhhc
Confidence 99999999999998887 789999999999998877653
No 244
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.34 E-value=3.8e-12 Score=146.63 Aligned_cols=171 Identities=19% Similarity=0.276 Sum_probs=126.3
Q ss_pred ccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccccccCC
Q 003088 631 VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGS 710 (849)
Q Consensus 631 i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~ 710 (849)
++|.+..+..+...+..... ...+++++|++||||+++|++++....+...+|+.++|..+......+.+||.
T Consensus 141 lig~s~~~~~~~~~i~~~~~-------~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~lfg~ 213 (441)
T PRK10365 141 MVGKSPAMQHLLSEIALVAP-------SEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGH 213 (441)
T ss_pred eEecCHHHHHHHHHHhhccC-------CCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHHhcCC
Confidence 56666666666555544311 11249999999999999999999988777889999999988776666778886
Q ss_pred CCCcc-ccccCcchhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCchhhhcc
Q 003088 711 PPGYV-GYEEGGLLTEAIRRRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKG 789 (849)
Q Consensus 711 ~~g~v-g~~~~~~l~~~i~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~~~ 789 (849)
..|.. |... ...+.+..+.+|+||||||+.+++..|..|+++++++.+...++......++++|++|+.++......
T Consensus 214 ~~~~~~~~~~--~~~g~~~~a~~gtl~ldei~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~~~~~~~ 291 (441)
T PRK10365 214 EKGAFTGADK--RREGRFVEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNA 291 (441)
T ss_pred CCCCcCCCCc--CCCCceeECCCCEEEEeccccCCHHHHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCHHHHHHc
Confidence 54432 2111 11234556678999999999999999999999999998876555444455899999999876654433
Q ss_pred cCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccc-cEEEcCCCC
Q 003088 790 RHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRID-EVVVFRSLE 839 (849)
Q Consensus 790 ~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d-~~i~f~pl~ 839 (849)
+. |+++|++||. ..|..|||.
T Consensus 292 ~~-----------------------------~~~~l~~~l~~~~i~~ppLr 313 (441)
T PRK10365 292 GR-----------------------------FRQDLYYRLNVVAIEVPSLR 313 (441)
T ss_pred CC-----------------------------chHHHHHHhccceecCCChh
Confidence 32 8899999996 466677776
No 245
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.34 E-value=3.3e-12 Score=146.25 Aligned_cols=173 Identities=16% Similarity=0.222 Sum_probs=108.8
Q ss_pred CHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCC----
Q 003088 613 TADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSES---- 688 (849)
Q Consensus 613 ~~~~~~~~~~l~~~l~~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~---- 688 (849)
.+..++++..+ ++++||+.+++.+..++...+ ...++||+||+|||||++|+++|+.+.+...
T Consensus 10 ~la~kyRP~~f-----~dliGq~~vv~~L~~ai~~~r--------i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~ 76 (507)
T PRK06645 10 PFARKYRPSNF-----AELQGQEVLVKVLSYTILNDR--------LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITEN 76 (507)
T ss_pred chhhhhCCCCH-----HHhcCcHHHHHHHHHHHHcCC--------CCceEEEECCCCCCHHHHHHHHHHHhcCccccccC
Confidence 34445555544 458999999999988876532 1235999999999999999999999854210
Q ss_pred ----cee-Eeecccccccccccc-ccCCCCCccccccCcchhHHHHh----CCCeEEEEeCccccCHHHHHHHHHHhhcC
Q 003088 689 ----SML-RLDMSEYMERHTVSK-LIGSPPGYVGYEEGGLLTEAIRR----RPFTLLLLDEIEKAHPDIFNILLQVFEDG 758 (849)
Q Consensus 689 ----~~i-~i~~~~~~~~~~~~~-l~g~~~g~vg~~~~~~l~~~i~~----~~~~vl~lDEid~l~~~~~~~Ll~~le~g 758 (849)
++- .-.|..+.+.....- .+.. ....|.++...+.+.... ..+.|+||||+|.++...++.|++.||+
T Consensus 77 ~~~~~C~~C~~C~~i~~~~h~Dv~eida-as~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEe- 154 (507)
T PRK06645 77 TTIKTCEQCTNCISFNNHNHPDIIEIDA-ASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEE- 154 (507)
T ss_pred cCcCCCCCChHHHHHhcCCCCcEEEeec-cCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhh-
Confidence 111 111222211110100 0111 111222221222222222 2467999999999999999999999997
Q ss_pred eeecCCCceeecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCC
Q 003088 759 HLTDSHGRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSL 838 (849)
Q Consensus 759 ~~~~~~g~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl 838 (849)
...+++||++++... .+.+.+.+|+ ..+.|.++
T Consensus 155 ----------pp~~~vfI~aTte~~------------------------------------kI~~tI~SRc-~~~ef~~l 187 (507)
T PRK06645 155 ----------PPPHIIFIFATTEVQ------------------------------------KIPATIISRC-QRYDLRRL 187 (507)
T ss_pred ----------cCCCEEEEEEeCChH------------------------------------HhhHHHHhcc-eEEEccCC
Confidence 345778888775311 0556788888 78889999
Q ss_pred CHHHHcccc
Q 003088 839 EKAQVCQLP 847 (849)
Q Consensus 839 ~~~~~~~I~ 847 (849)
+.+++.+++
T Consensus 188 s~~el~~~L 196 (507)
T PRK06645 188 SFEEIFKLL 196 (507)
T ss_pred CHHHHHHHH
Confidence 988877654
No 246
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.34 E-value=1.8e-12 Score=135.55 Aligned_cols=156 Identities=23% Similarity=0.387 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHHHhccccccHHHHHH---HHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCce
Q 003088 614 ADERMLLVGLEEQLKKRVIGQDEAVAA---ISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSM 690 (849)
Q Consensus 614 ~~~~~~~~~l~~~l~~~i~Gq~~~i~~---l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~ 690 (849)
-.++.+++.|.+ .+||++++-+ |+..++..+ +..|+||||||||||++|+.|+.........|
T Consensus 128 LaermRPktL~d-----yvGQ~hlv~q~gllrs~ieq~~---------ipSmIlWGppG~GKTtlArlia~tsk~~Syrf 193 (554)
T KOG2028|consen 128 LAERMRPKTLDD-----YVGQSHLVGQDGLLRSLIEQNR---------IPSMILWGPPGTGKTTLARLIASTSKKHSYRF 193 (554)
T ss_pred hhhhcCcchHHH-----hcchhhhcCcchHHHHHHHcCC---------CCceEEecCCCCchHHHHHHHHhhcCCCceEE
Confidence 345666666665 4555555432 233333321 23499999999999999999999864444446
Q ss_pred eEeeccccccccccccccCCCCCccccccCcchhHHHHh----CCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCc
Q 003088 691 LRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRR----RPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGR 766 (849)
Q Consensus 691 i~i~~~~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~i~~----~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~ 766 (849)
|.+....-... +.++.+..+.+. ....|||||||++++...|+.||..+|.|.
T Consensus 194 velSAt~a~t~----------------dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQD~fLP~VE~G~------- 250 (554)
T KOG2028|consen 194 VELSATNAKTN----------------DVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQDTFLPHVENGD------- 250 (554)
T ss_pred EEEeccccchH----------------HHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhhhcccceeccCc-------
Confidence 66655432111 001122222111 234799999999999999999999999964
Q ss_pred eeecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHHHccc
Q 003088 767 RVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQL 846 (849)
Q Consensus 767 ~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~I 846 (849)
+++|.+|.-.+. |. +..+|++|| .++.+.+|..+++..|
T Consensus 251 ------I~lIGATTENPS-----------Fq-----------------------ln~aLlSRC-~VfvLekL~~n~v~~i 289 (554)
T KOG2028|consen 251 ------ITLIGATTENPS-----------FQ-----------------------LNAALLSRC-RVFVLEKLPVNAVVTI 289 (554)
T ss_pred ------eEEEecccCCCc-----------cc-----------------------hhHHHHhcc-ceeEeccCCHHHHHHH
Confidence 567776543221 11 568899999 8889999999998877
Q ss_pred c
Q 003088 847 P 847 (849)
Q Consensus 847 ~ 847 (849)
+
T Consensus 290 L 290 (554)
T KOG2028|consen 290 L 290 (554)
T ss_pred H
Confidence 5
No 247
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.33 E-value=5e-12 Score=137.35 Aligned_cols=160 Identities=23% Similarity=0.382 Sum_probs=108.1
Q ss_pred hccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCC--ceeEeeccccccccccc
Q 003088 628 KKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSES--SMLRLDMSEYMERHTVS 705 (849)
Q Consensus 628 ~~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~--~~i~i~~~~~~~~~~~~ 705 (849)
++.|+||+.+++.+..++...+.. .++||+||+|+||+++|.++++.+++.+. .+.. |. +.....++
T Consensus 3 f~~iiGq~~~~~~L~~~i~~~rl~--------ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~--~~-~~~~~hPD 71 (314)
T PRK07399 3 FANLIGQPLAIELLTAAIKQNRIA--------PAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIR--RR-LEEGNHPD 71 (314)
T ss_pred HHHhCCHHHHHHHHHHHHHhCCCC--------ceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHh--cc-cccCCCCC
Confidence 467999999999999999764321 34999999999999999999999876531 1111 11 11111111
Q ss_pred ccc--------CCC---------------CCccccccCcchhHHHHh----CCCeEEEEeCccccCHHHHHHHHHHhhcC
Q 003088 706 KLI--------GSP---------------PGYVGYEEGGLLTEAIRR----RPFTLLLLDEIEKAHPDIFNILLQVFEDG 758 (849)
Q Consensus 706 ~l~--------g~~---------------~g~vg~~~~~~l~~~i~~----~~~~vl~lDEid~l~~~~~~~Ll~~le~g 758 (849)
..+ |.. .+.++.++...+.+.+.. +.+.|++||++|+|+...+|.||+.||+
T Consensus 72 l~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEE- 150 (314)
T PRK07399 72 LLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEE- 150 (314)
T ss_pred EEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhC-
Confidence 010 100 001111111223333433 3467999999999999999999999998
Q ss_pred eeecCCCceeecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCC
Q 003088 759 HLTDSHGRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSL 838 (849)
Q Consensus 759 ~~~~~~g~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl 838 (849)
+ ++++||++|+... .+.|.+.+|+ ..+.|.|+
T Consensus 151 ----------P-p~~~fILi~~~~~------------------------------------~Ll~TI~SRc-q~i~f~~l 182 (314)
T PRK07399 151 ----------P-GNGTLILIAPSPE------------------------------------SLLPTIVSRC-QIIPFYRL 182 (314)
T ss_pred ----------C-CCCeEEEEECChH------------------------------------hCcHHHHhhc-eEEecCCC
Confidence 2 3677888776421 1779999999 89999999
Q ss_pred CHHHHcccc
Q 003088 839 EKAQVCQLP 847 (849)
Q Consensus 839 ~~~~~~~I~ 847 (849)
+.+++.+++
T Consensus 183 ~~~~~~~~L 191 (314)
T PRK07399 183 SDEQLEQVL 191 (314)
T ss_pred CHHHHHHHH
Confidence 999987765
No 248
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.33 E-value=5.6e-12 Score=147.31 Aligned_cols=163 Identities=18% Similarity=0.315 Sum_probs=106.1
Q ss_pred hccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCC----ceeEe-ecccccccc
Q 003088 628 KKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSES----SMLRL-DMSEYMERH 702 (849)
Q Consensus 628 ~~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~----~~i~i-~~~~~~~~~ 702 (849)
.+.++||+.+++.+..++...+. ...+||+||+|||||++|+.+|+.+.+.+. |+-.+ .|..+....
T Consensus 15 f~~viGq~~v~~~L~~~i~~~~~--------~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~ 86 (559)
T PRK05563 15 FEDVVGQEHITKTLKNAIKQGKI--------SHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGS 86 (559)
T ss_pred HHhccCcHHHHHHHHHHHHcCCC--------CeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCC
Confidence 36799999999999999876422 123899999999999999999999854321 11111 111111110
Q ss_pred ccc-cccCCCCCccccccCcchhHHHHh----CCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEE
Q 003088 703 TVS-KLIGSPPGYVGYEEGGLLTEAIRR----RPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVM 777 (849)
Q Consensus 703 ~~~-~l~g~~~g~vg~~~~~~l~~~i~~----~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ 777 (849)
... ..+.. ....|.++...+.+.+.. ..+.|++|||+|.++...+|.|++.||+ ...+++||+
T Consensus 87 ~~dv~eida-as~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEe-----------pp~~~ifIl 154 (559)
T PRK05563 87 LMDVIEIDA-ASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEE-----------PPAHVIFIL 154 (559)
T ss_pred CCCeEEeec-cccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcC-----------CCCCeEEEE
Confidence 000 00100 111222222233333333 3367999999999999999999999998 345788888
Q ss_pred ecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHHHcccc
Q 003088 778 TSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQLP 847 (849)
Q Consensus 778 tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~I~ 847 (849)
+|+... .+.+.+.+|+ ..+.|.+++.+++.+.+
T Consensus 155 att~~~------------------------------------ki~~tI~SRc-~~~~f~~~~~~ei~~~L 187 (559)
T PRK05563 155 ATTEPH------------------------------------KIPATILSRC-QRFDFKRISVEDIVERL 187 (559)
T ss_pred EeCChh------------------------------------hCcHHHHhHh-eEEecCCCCHHHHHHHH
Confidence 776321 1668899999 67889999988876554
No 249
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.33 E-value=2.6e-12 Score=147.86 Aligned_cols=174 Identities=20% Similarity=0.272 Sum_probs=110.2
Q ss_pred CHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCce--
Q 003088 613 TADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSM-- 690 (849)
Q Consensus 613 ~~~~~~~~~~l~~~l~~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~-- 690 (849)
.|.+++++..+ +.++||+.+++.+..++...+. ..++||+||+|+|||++|+++|+.+.+.+..-
T Consensus 5 ~~~~KyRP~~F-----~dIIGQe~iv~~L~~aI~~~rl--------~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~ 71 (605)
T PRK05896 5 TFYRKYRPHNF-----KQIIGQELIKKILVNAILNNKL--------THAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGD 71 (605)
T ss_pred hHHHHhCCCCH-----HHhcCcHHHHHHHHHHHHcCCC--------CceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC
Confidence 45556666555 4589999999999888865321 12499999999999999999999985432110
Q ss_pred eEeeccc---cccccccccccCCCCCccccccCcchhHHHHhC----CCeEEEEeCccccCHHHHHHHHHHhhcCeeecC
Q 003088 691 LRLDMSE---YMERHTVSKLIGSPPGYVGYEEGGLLTEAIRRR----PFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDS 763 (849)
Q Consensus 691 i~i~~~~---~~~~~~~~~l~g~~~g~vg~~~~~~l~~~i~~~----~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~ 763 (849)
..-.|.. +........+.-.+.+..|.++.+.+.+.+... ++.|++|||+|.++...++.|+..||+
T Consensus 72 ~Cg~C~sCr~i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEE------ 145 (605)
T PRK05896 72 CCNSCSVCESINTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEE------ 145 (605)
T ss_pred CCcccHHHHHHHcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHh------
Confidence 0011111 101000000000111122333222233333332 357999999999999999999999998
Q ss_pred CCceeecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHHH
Q 003088 764 HGRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQV 843 (849)
Q Consensus 764 ~g~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~ 843 (849)
+..+++||++|+... .+.+.+.+|| ..+.|.|++.+++
T Consensus 146 -----Pp~~tvfIL~Tt~~~------------------------------------KLl~TI~SRc-q~ieF~~Ls~~eL 183 (605)
T PRK05896 146 -----PPKHVVFIFATTEFQ------------------------------------KIPLTIISRC-QRYNFKKLNNSEL 183 (605)
T ss_pred -----CCCcEEEEEECCChH------------------------------------hhhHHHHhhh-hhcccCCCCHHHH
Confidence 334788888776421 1567889998 6889999998887
Q ss_pred cccc
Q 003088 844 CQLP 847 (849)
Q Consensus 844 ~~I~ 847 (849)
...+
T Consensus 184 ~~~L 187 (605)
T PRK05896 184 QELL 187 (605)
T ss_pred HHHH
Confidence 6543
No 250
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.33 E-value=4.5e-12 Score=120.07 Aligned_cols=116 Identities=29% Similarity=0.499 Sum_probs=84.6
Q ss_pred ceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccccccCCCCCccccccC--cchhHHHHhCC-CeEEEEe
Q 003088 662 MLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEG--GLLTEAIRRRP-FTLLLLD 738 (849)
Q Consensus 662 lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~vg~~~~--~~l~~~i~~~~-~~vl~lD 738 (849)
+||+||||||||++|+.+++.+ +.+++.++++++.+. +.+.... ..+.....+.. .+|||||
T Consensus 1 ill~G~~G~GKT~l~~~la~~l---~~~~~~i~~~~~~~~------------~~~~~~~~i~~~~~~~~~~~~~~vl~iD 65 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL---GFPFIEIDGSELISS------------YAGDSEQKIRDFFKKAKKSAKPCVLFID 65 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT---TSEEEEEETTHHHTS------------STTHHHHHHHHHHHHHHHTSTSEEEEEE
T ss_pred CEEECcCCCCeeHHHHHHHhhc---ccccccccccccccc------------cccccccccccccccccccccceeeeec
Confidence 6899999999999999999997 578999999887632 1222111 11222233344 6999999
Q ss_pred CccccCHHH-----------HHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCchhhhcccCCccccccccCCcccHH
Q 003088 739 EIEKAHPDI-----------FNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYA 807 (849)
Q Consensus 739 Eid~l~~~~-----------~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~ 807 (849)
|+|.+.+.. ++.|+..|+...- ...+++||+|||.. +
T Consensus 66 e~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~--------~~~~~~vI~ttn~~-~----------------------- 113 (132)
T PF00004_consen 66 EIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSS--------KNSRVIVIATTNSP-D----------------------- 113 (132)
T ss_dssp TGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTT--------TSSSEEEEEEESSG-G-----------------------
T ss_pred cchhcccccccccccccccccceeeeccccccc--------ccccceeEEeeCCh-h-----------------------
Confidence 999997764 8999999987331 12468999999972 1
Q ss_pred hHHHHHHHHHHhhCChHHh-hccccEEEcC
Q 003088 808 GMKTLVVEELKAYFRPELL-NRIDEVVVFR 836 (849)
Q Consensus 808 ~~~~~~~~~l~~~~~pell-~R~d~~i~f~ 836 (849)
.++|.|+ +||+..|.|+
T Consensus 114 ------------~i~~~l~~~rf~~~i~~~ 131 (132)
T PF00004_consen 114 ------------KIDPALLRSRFDRRIEFP 131 (132)
T ss_dssp ------------GSCHHHHSTTSEEEEEE-
T ss_pred ------------hCCHhHHhCCCcEEEEcC
Confidence 1789999 9999888775
No 251
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.33 E-value=4.4e-12 Score=145.21 Aligned_cols=169 Identities=18% Similarity=0.301 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHHhccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCC----ce
Q 003088 615 DERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSES----SM 690 (849)
Q Consensus 615 ~~~~~~~~l~~~l~~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~----~~ 690 (849)
.+++++..+ ++++||+.+++.+...+...+. ...+||+||+|+|||++|+++++.+.+... ++
T Consensus 5 ~~KyRP~~f-----deiiGqe~v~~~L~~~I~~grl--------~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC 71 (535)
T PRK08451 5 ALKYRPKHF-----DELIGQESVSKTLSLALDNNRL--------AHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPC 71 (535)
T ss_pred HHHHCCCCH-----HHccCcHHHHHHHHHHHHcCCC--------CeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCC
Confidence 445555544 4599999999999988865321 123799999999999999999999864321 11
Q ss_pred eEe-eccccccccccccccCCCCCccccccCcchhHHHHh-------CCCeEEEEeCccccCHHHHHHHHHHhhcCeeec
Q 003088 691 LRL-DMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRR-------RPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTD 762 (849)
Q Consensus 691 i~i-~~~~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~i~~-------~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~ 762 (849)
..+ .|..+.......-+.+......|.+ .+.+.+.. +++.|++|||+|.++.+++|.||+.||+
T Consensus 72 ~~C~~C~~~~~~~h~dv~eldaas~~gId---~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEE----- 143 (535)
T PRK08451 72 DTCIQCQSALENRHIDIIEMDAASNRGID---DIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEE----- 143 (535)
T ss_pred cccHHHHHHhhcCCCeEEEeccccccCHH---HHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhh-----
Confidence 111 1111111111111111111111221 23333322 3457999999999999999999999998
Q ss_pred CCCceeecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHH
Q 003088 763 SHGRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQ 842 (849)
Q Consensus 763 ~~g~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~ 842 (849)
+..+++||++++.... +.+.+.+|+ ..+.|.|++.++
T Consensus 144 ------pp~~t~FIL~ttd~~k------------------------------------L~~tI~SRc-~~~~F~~Ls~~e 180 (535)
T PRK08451 144 ------PPSYVKFILATTDPLK------------------------------------LPATILSRT-QHFRFKQIPQNS 180 (535)
T ss_pred ------cCCceEEEEEECChhh------------------------------------CchHHHhhc-eeEEcCCCCHHH
Confidence 3457888888864211 568899998 789999999888
Q ss_pred Hcccc
Q 003088 843 VCQLP 847 (849)
Q Consensus 843 ~~~I~ 847 (849)
+.+.+
T Consensus 181 i~~~L 185 (535)
T PRK08451 181 IISHL 185 (535)
T ss_pred HHHHH
Confidence 76543
No 252
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.32 E-value=2.6e-12 Score=150.80 Aligned_cols=163 Identities=20% Similarity=0.303 Sum_probs=105.3
Q ss_pred hccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCC----ceeEe-ecccccccc
Q 003088 628 KKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSES----SMLRL-DMSEYMERH 702 (849)
Q Consensus 628 ~~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~----~~i~i-~~~~~~~~~ 702 (849)
+++|+||+++++.|..++...+ ....+||+||+|+|||++|+++++.+++... ++-.+ .|.++....
T Consensus 15 f~~iiGq~~v~~~L~~~i~~~~--------~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~ 86 (576)
T PRK14965 15 FSDLTGQEHVSRTLQNAIDTGR--------VAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGR 86 (576)
T ss_pred HHHccCcHHHHHHHHHHHHcCC--------CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCC
Confidence 3669999999999998887532 1223899999999999999999999864321 11111 111221111
Q ss_pred ccccccCCCCCccccccCcchhHHHHhC----CCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEe
Q 003088 703 TVSKLIGSPPGYVGYEEGGLLTEAIRRR----PFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMT 778 (849)
Q Consensus 703 ~~~~l~g~~~g~vg~~~~~~l~~~i~~~----~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~t 778 (849)
....+.-...+..|.++...+.+.+... .+.|++|||+|.++...+|.|++.||+ ...+++||++
T Consensus 87 ~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEe-----------pp~~~~fIl~ 155 (576)
T PRK14965 87 SVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEE-----------PPPHVKFIFA 155 (576)
T ss_pred CCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHc-----------CCCCeEEEEE
Confidence 1111000001122333333344444333 367999999999999999999999998 3457888888
Q ss_pred cCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHHHccc
Q 003088 779 SNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQL 846 (849)
Q Consensus 779 sn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~I 846 (849)
|+.... +.+.+.+|| ..+.|.+++.+++...
T Consensus 156 t~~~~k------------------------------------l~~tI~SRc-~~~~f~~l~~~~i~~~ 186 (576)
T PRK14965 156 TTEPHK------------------------------------VPITILSRC-QRFDFRRIPLQKIVDR 186 (576)
T ss_pred eCChhh------------------------------------hhHHHHHhh-hhhhcCCCCHHHHHHH
Confidence 864211 556788888 6888888888776543
No 253
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.32 E-value=5e-11 Score=124.99 Aligned_cols=116 Identities=19% Similarity=0.192 Sum_probs=88.1
Q ss_pred CeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCCC-eEEEEccChH-------HHHHHhhccHHHHhccccEEe
Q 003088 383 DVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGE-LQCIASTTQD-------EHRTQFEKDKALARRFQPVLI 454 (849)
Q Consensus 383 ~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~~-i~vI~at~~~-------~~~~~~~~d~al~~Rf~~i~~ 454 (849)
|+||||||+|.| +.++...|...|+..- -++|.|||.- ++..-..+...|..|+-.|..
T Consensus 292 pGVLFIDEvHmL-------------DIE~FsFlnrAlEse~aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLDRllII~t 358 (450)
T COG1224 292 PGVLFIDEVHML-------------DIECFSFLNRALESELAPIIILATNRGMTKIRGTDIESPHGIPLDLLDRLLIIST 358 (450)
T ss_pred cceEEEechhhh-------------hHHHHHHHHHHhhcccCcEEEEEcCCceeeecccCCcCCCCCCHhhhhheeEEec
Confidence 689999999999 6888999999998653 4566666642 122234677889999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhcccccCcchhhHHHHHHHHhhHHHHh
Q 003088 455 SEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIE 520 (849)
Q Consensus 455 ~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~~~r~~p~~ai~ll~~a~~~~~~~ 520 (849)
.+++.++..+|++..++ ..++.+++++++.++.+...-- -..+++|+.-|...+..+
T Consensus 359 ~py~~~EireIi~iRa~----ee~i~l~~~Ale~L~~ig~etS-----LRYa~qLL~pa~iiA~~r 415 (450)
T COG1224 359 RPYSREEIREIIRIRAK----EEDIELSDDALEYLTDIGEETS-----LRYAVQLLTPASIIAKRR 415 (450)
T ss_pred CCCCHHHHHHHHHHhhh----hhccccCHHHHHHHHhhchhhh-----HHHHHHhccHHHHHHHHh
Confidence 99999999999988777 6789999999999988755321 134567776665555443
No 254
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.32 E-value=1e-11 Score=137.70 Aligned_cols=172 Identities=22% Similarity=0.389 Sum_probs=110.2
Q ss_pred CCHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCC--Cc
Q 003088 612 ITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSE--SS 689 (849)
Q Consensus 612 ~~~~~~~~~~~l~~~l~~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~--~~ 689 (849)
+.|.+++++..+. .++|++.+++.+...+... . ..+++|+||||||||++|+++++.+++.. .+
T Consensus 3 ~~w~~ky~P~~~~-----~~~g~~~~~~~L~~~~~~~-------~--~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~ 68 (337)
T PRK12402 3 PLWTEKYRPALLE-----DILGQDEVVERLSRAVDSP-------N--LPHLLVQGPPGSGKTAAVRALARELYGDPWENN 68 (337)
T ss_pred CchHHhhCCCcHH-----HhcCCHHHHHHHHHHHhCC-------C--CceEEEECCCCCCHHHHHHHHHHHhcCcccccc
Confidence 3567777776654 4789999999987777531 1 12599999999999999999999986543 45
Q ss_pred eeEeeccccccccccccccCCCCCc---cc------cccCcchhHHHH--------hCCCeEEEEeCccccCHHHHHHHH
Q 003088 690 MLRLDMSEYMERHTVSKLIGSPPGY---VG------YEEGGLLTEAIR--------RRPFTLLLLDEIEKAHPDIFNILL 752 (849)
Q Consensus 690 ~i~i~~~~~~~~~~~~~l~g~~~g~---vg------~~~~~~l~~~i~--------~~~~~vl~lDEid~l~~~~~~~Ll 752 (849)
++.++++++..... ..++..+.+ .+ ......+.+.++ ..+..+|+|||+|.+++..++.|+
T Consensus 69 ~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~ 146 (337)
T PRK12402 69 FTEFNVADFFDQGK--KYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALR 146 (337)
T ss_pred eEEechhhhhhcch--hhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHH
Confidence 78888876542210 000111100 00 001112222221 133569999999999999999999
Q ss_pred HHhhcCeeecCCCceeecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccE
Q 003088 753 QVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEV 832 (849)
Q Consensus 753 ~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~ 832 (849)
..|+.. ..+++||++++.... +.+.|.+|+ ..
T Consensus 147 ~~le~~-----------~~~~~~Il~~~~~~~------------------------------------~~~~L~sr~-~~ 178 (337)
T PRK12402 147 RIMEQY-----------SRTCRFIIATRQPSK------------------------------------LIPPIRSRC-LP 178 (337)
T ss_pred HHHHhc-----------cCCCeEEEEeCChhh------------------------------------CchhhcCCc-eE
Confidence 999862 234667777764221 345566776 56
Q ss_pred EEcCCCCHHHHcccc
Q 003088 833 VVFRSLEKAQVCQLP 847 (849)
Q Consensus 833 i~f~pl~~~~~~~I~ 847 (849)
+.|.|++.+++.+++
T Consensus 179 v~~~~~~~~~~~~~l 193 (337)
T PRK12402 179 LFFRAPTDDELVDVL 193 (337)
T ss_pred EEecCCCHHHHHHHH
Confidence 778888877766554
No 255
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.31 E-value=1.3e-11 Score=129.41 Aligned_cols=79 Identities=22% Similarity=0.408 Sum_probs=64.7
Q ss_pred eEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCchhhhccc-CCccccccccCCcccHHhHHH
Q 003088 733 TLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKGR-HGSIGFLLEDNESTSYAGMKT 811 (849)
Q Consensus 733 ~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~~~~-~~~~gf~~~~~~~~~~~~~~~ 811 (849)
|||||||++.|+-+.+..|.++||+- --.++|++||.|-..+..-. .++.|
T Consensus 293 GVLFIDEvHmLDIE~FsFlnrAlEse------------~aPIii~AtNRG~~kiRGTd~~sPhG---------------- 344 (450)
T COG1224 293 GVLFIDEVHMLDIECFSFLNRALESE------------LAPIIILATNRGMTKIRGTDIESPHG---------------- 344 (450)
T ss_pred ceEEEechhhhhHHHHHHHHHHhhcc------------cCcEEEEEcCCceeeecccCCcCCCC----------------
Confidence 79999999999999999999999972 24689999999866543221 11233
Q ss_pred HHHHHHHhhCChHHhhccccEEEcCCCCHHHHccccCC
Q 003088 812 LVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQLPLI 849 (849)
Q Consensus 812 ~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~I~~l 849 (849)
++.+|++|+ .+|.-.||+++++++|+++
T Consensus 345 ---------IP~DlLDRl-lII~t~py~~~EireIi~i 372 (450)
T COG1224 345 ---------IPLDLLDRL-LIISTRPYSREEIREIIRI 372 (450)
T ss_pred ---------CCHhhhhhe-eEEecCCCCHHHHHHHHHH
Confidence 789999999 9999999999999999863
No 256
>PRK09087 hypothetical protein; Validated
Probab=99.31 E-value=6.5e-11 Score=122.88 Aligned_cols=142 Identities=15% Similarity=0.108 Sum_probs=104.0
Q ss_pred CCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCc
Q 003088 312 NNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEV 391 (849)
Q Consensus 312 ~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi 391 (849)
+.++|+||+|+|||+++++++... +..++ +...+. ..++..+.. .+|+|||+
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~----------~~~~i--~~~~~~-------------~~~~~~~~~---~~l~iDDi 96 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKS----------DALLI--HPNEIG-------------SDAANAAAE---GPVLIEDI 96 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhc----------CCEEe--cHHHcc-------------hHHHHhhhc---CeEEEECC
Confidence 348999999999999999988764 22222 222111 112222221 38999999
Q ss_pred chhhhCCCCCCCCCCccHHHHHHHhhhhcCCCeEEEEccChHHHHHHhhccHHHHhcc---ccEEecCCCHHHHHHHHHH
Q 003088 392 HTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRF---QPVLISEPSQEDAVRILLG 468 (849)
Q Consensus 392 ~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~~i~vI~at~~~~~~~~~~~d~al~~Rf---~~i~~~~ps~~e~~~iL~~ 468 (849)
|.+. .....+.+++....+.+..++|++++.+.+-. ...+.|++|| ..+++.+|+.+++.++|+.
T Consensus 97 ~~~~----------~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~--~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~ 164 (226)
T PRK09087 97 DAGG----------FDETGLFHLINSVRQAGTSLLMTSRLWPSSWN--VKLPDLKSRLKAATVVEIGEPDDALLSQVIFK 164 (226)
T ss_pred CCCC----------CCHHHHHHHHHHHHhCCCeEEEECCCChHHhc--cccccHHHHHhCCceeecCCCCHHHHHHHHHH
Confidence 9872 12456778888888888888888887776322 2368999999 5799999999999999998
Q ss_pred HHHHHHhhcCCccCHHHHHHHHHhhhccc
Q 003088 469 LREKYEAHHNCKFTLEAINAAVHLSARYI 497 (849)
Q Consensus 469 ~~~~~~~~~~~~i~~~~l~~~a~ls~~~~ 497 (849)
.++ ..++.++++++++++..+.+-+
T Consensus 165 ~~~----~~~~~l~~ev~~~La~~~~r~~ 189 (226)
T PRK09087 165 LFA----DRQLYVDPHVVYYLVSRMERSL 189 (226)
T ss_pred HHH----HcCCCCCHHHHHHHHHHhhhhH
Confidence 887 4689999999999999887644
No 257
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.31 E-value=3.5e-12 Score=148.01 Aligned_cols=160 Identities=21% Similarity=0.308 Sum_probs=101.0
Q ss_pred ccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCC----CceeEee-ccccccccc
Q 003088 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSE----SSMLRLD-MSEYMERHT 703 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~----~~~i~i~-~~~~~~~~~ 703 (849)
++|+||+.+++.+..++...+. ...+||+||+|+|||++|+.+++.+++.. .++-.++ |..+.....
T Consensus 16 ~divGq~~v~~~L~~~i~~~~~--------~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~ 87 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQRL--------HHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRF 87 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC--------CEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 5689999999999888875321 12379999999999999999999985422 1211110 111111100
Q ss_pred cccccC-CCCCccccccCcchhHHHHh----CCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEe
Q 003088 704 VSKLIG-SPPGYVGYEEGGLLTEAIRR----RPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMT 778 (849)
Q Consensus 704 ~~~l~g-~~~g~vg~~~~~~l~~~i~~----~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~t 778 (849)
. .++. ......+.+....+.+.+.. ..+.|+||||+|+++...+|.||+.||+ ...+++||++
T Consensus 88 ~-d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEe-----------pp~~~~fIL~ 155 (527)
T PRK14969 88 V-DLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEE-----------PPEHVKFILA 155 (527)
T ss_pred C-ceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhC-----------CCCCEEEEEE
Confidence 0 1110 00111222221222222222 2357999999999999999999999998 2357788887
Q ss_pred cCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHHHcc
Q 003088 779 SNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQ 845 (849)
Q Consensus 779 sn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~ 845 (849)
|+.... +.+.+++|| ..+.|.+++.+++.+
T Consensus 156 t~d~~k------------------------------------il~tI~SRc-~~~~f~~l~~~~i~~ 185 (527)
T PRK14969 156 TTDPQK------------------------------------IPVTVLSRC-LQFNLKQMPPPLIVS 185 (527)
T ss_pred eCChhh------------------------------------CchhHHHHH-HHHhcCCCCHHHHHH
Confidence 764211 455688888 788888888877654
No 258
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.31 E-value=7.5e-12 Score=148.88 Aligned_cols=162 Identities=19% Similarity=0.226 Sum_probs=106.1
Q ss_pred ccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhc----------C-------------
Q 003088 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYF----------G------------- 685 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~----------~------------- 685 (849)
..|+||+.++..+..+.... ..++|||.|++|||||++|++|++.+. .
T Consensus 4 ~~ivGq~~~~~al~~~av~~---------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~ 74 (633)
T TIGR02442 4 TAIVGQEDLKLALLLNAVDP---------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEEC 74 (633)
T ss_pred chhcChHHHHHHHHHHhhCC---------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhh
Confidence 56999999997775554422 124599999999999999999999872 0
Q ss_pred ---------CCCceeEeeccccccccccccccCCCC--CccccccCcchhHHHHhCCCeEEEEeCccccCHHHHHHHHHH
Q 003088 686 ---------SESSMLRLDMSEYMERHTVSKLIGSPP--GYVGYEEGGLLTEAIRRRPFTLLLLDEIEKAHPDIFNILLQV 754 (849)
Q Consensus 686 ---------~~~~~i~i~~~~~~~~~~~~~l~g~~~--g~vg~~~~~~l~~~i~~~~~~vl~lDEid~l~~~~~~~Ll~~ 754 (849)
...+|+.+.++. +...|+|.-. ..........-.+.+.++.++|||||||+.+++.+|+.|+++
T Consensus 75 ~~~~~~~~~~~~pfv~~p~~~-----t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~~~q~~Ll~~ 149 (633)
T TIGR02442 75 RRKYRPSEQRPVPFVNLPLGA-----TEDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLDDHLVDVLLDA 149 (633)
T ss_pred hhcccccccCCCCeeeCCCCC-----cHHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCCHHHHHHHHHH
Confidence 123444443322 1223444310 000000000112344566789999999999999999999999
Q ss_pred hhcCeee--cCCCceeecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccE
Q 003088 755 FEDGHLT--DSHGRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEV 832 (849)
Q Consensus 755 le~g~~~--~~~g~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~ 832 (849)
|++|.+. ..+.......++++|+|+|+.. + .|+++|++||+..
T Consensus 150 le~g~~~v~r~g~~~~~~~~~~lIat~np~e------g-----------------------------~l~~~L~dR~~l~ 194 (633)
T TIGR02442 150 AAMGVNRVEREGLSVSHPARFVLIGTMNPEE------G-----------------------------DLRPQLLDRFGLC 194 (633)
T ss_pred HhcCCEEEEECCceeeecCCeEEEEecCCCC------C-----------------------------CCCHHHHhhcceE
Confidence 9999643 3233222335899999999631 1 1788999999987
Q ss_pred EEcCCCC
Q 003088 833 VVFRSLE 839 (849)
Q Consensus 833 i~f~pl~ 839 (849)
|...++.
T Consensus 195 i~v~~~~ 201 (633)
T TIGR02442 195 VDVAAPR 201 (633)
T ss_pred EEccCCC
Confidence 8777665
No 259
>CHL00176 ftsH cell division protein; Validated
Probab=99.31 E-value=6.3e-12 Score=147.92 Aligned_cols=156 Identities=24% Similarity=0.344 Sum_probs=103.9
Q ss_pred ccccccHHHHHHHHHHHHHh-------hcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccc
Q 003088 629 KRVIGQDEAVAAISRAVKRS-------RVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMER 701 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~~-------~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~ 701 (849)
+.+.|.+++++.+...+... ..|... ..++||+||||||||++|+++|... +.+|+.++++++...
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~----p~gVLL~GPpGTGKT~LAralA~e~---~~p~i~is~s~f~~~ 255 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKI----PKGVLLVGPPGTGKTLLAKAIAGEA---EVPFFSISGSEFVEM 255 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCC----CceEEEECCCCCCHHHHHHHHHHHh---CCCeeeccHHHHHHH
Confidence 44677777776666554332 112222 2349999999999999999999985 678999998876432
Q ss_pred cccccccCCCCCcccccc--CcchhHHHHhCCCeEEEEeCccccC-----------H---HHHHHHHHHhhcCeeecCCC
Q 003088 702 HTVSKLIGSPPGYVGYEE--GGLLTEAIRRRPFTLLLLDEIEKAH-----------P---DIFNILLQVFEDGHLTDSHG 765 (849)
Q Consensus 702 ~~~~~l~g~~~g~vg~~~--~~~l~~~i~~~~~~vl~lDEid~l~-----------~---~~~~~Ll~~le~g~~~~~~g 765 (849)
++|... -..+....+...++||||||||.+. . .+++.||..|+...
T Consensus 256 ------------~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~------ 317 (638)
T CHL00176 256 ------------FVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFK------ 317 (638)
T ss_pred ------------hhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhcccc------
Confidence 122111 1122333344556899999999883 2 24566666665411
Q ss_pred ceeecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHh--hccccEEEcCCCCHHHH
Q 003088 766 RRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELL--NRIDEVVVFRSLEKAQV 843 (849)
Q Consensus 766 ~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell--~R~d~~i~f~pl~~~~~ 843 (849)
...+++||++||... .++|.|+ .|||..|.|.+++.++.
T Consensus 318 ---~~~~ViVIaaTN~~~------------------------------------~LD~ALlRpGRFd~~I~v~lPd~~~R 358 (638)
T CHL00176 318 ---GNKGVIVIAATNRVD------------------------------------ILDAALLRPGRFDRQITVSLPDREGR 358 (638)
T ss_pred ---CCCCeeEEEecCchH------------------------------------hhhhhhhccccCceEEEECCCCHHHH
Confidence 123678999999631 1567777 48999999999999988
Q ss_pred ccccC
Q 003088 844 CQLPL 848 (849)
Q Consensus 844 ~~I~~ 848 (849)
.+|++
T Consensus 359 ~~IL~ 363 (638)
T CHL00176 359 LDILK 363 (638)
T ss_pred HHHHH
Confidence 88874
No 260
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.31 E-value=3.2e-12 Score=148.35 Aligned_cols=163 Identities=20% Similarity=0.284 Sum_probs=101.3
Q ss_pred ccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCC----ceeEee-ccccccccc
Q 003088 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSES----SMLRLD-MSEYMERHT 703 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~----~~i~i~-~~~~~~~~~ 703 (849)
++|+||+.+++.|..++...+ ....+||+||+|||||++|+++++.+.+... ++-.+. |..+.....
T Consensus 16 ddIIGQe~vv~~L~~ai~~~r--------l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~ 87 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGR--------LHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRY 87 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCC--------CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCc
Confidence 569999999999999887532 1234899999999999999999999854321 111100 111111000
Q ss_pred cccccCCCCCccccccCcchhHHHH----hCCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEec
Q 003088 704 VSKLIGSPPGYVGYEEGGLLTEAIR----RRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTS 779 (849)
Q Consensus 704 ~~~l~g~~~g~vg~~~~~~l~~~i~----~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ts 779 (849)
...+.-......|.+....+.+.+. ...+.||||||+|.++...+|.||+.||+ ...+++||++|
T Consensus 88 ~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEE-----------Pp~~v~fILaT 156 (709)
T PRK08691 88 VDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEE-----------PPEHVKFILAT 156 (709)
T ss_pred cceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHh-----------CCCCcEEEEEe
Confidence 0000000011112111111222221 13457999999999999999999999997 23477888888
Q ss_pred CCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHHHcccc
Q 003088 780 NVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQLP 847 (849)
Q Consensus 780 n~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~I~ 847 (849)
+.... +.+.+++|| ..+.|.+++.+++.+.+
T Consensus 157 td~~k------------------------------------L~~TIrSRC-~~f~f~~Ls~eeI~~~L 187 (709)
T PRK08691 157 TDPHK------------------------------------VPVTVLSRC-LQFVLRNMTAQQVADHL 187 (709)
T ss_pred CCccc------------------------------------cchHHHHHH-hhhhcCCCCHHHHHHHH
Confidence 74221 456677888 77788888887766544
No 261
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.31 E-value=4.9e-12 Score=147.78 Aligned_cols=163 Identities=21% Similarity=0.286 Sum_probs=106.3
Q ss_pred ccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCC---------ceeE-eecccc
Q 003088 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSES---------SMLR-LDMSEY 698 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~---------~~i~-i~~~~~ 698 (849)
++|+||+.+++.|..++...+ ...++||+||+|+|||++|+++|+.+..... ++-. -.|..+
T Consensus 24 ~dliGq~~~v~~L~~~~~~gr--------i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i 95 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGR--------IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAI 95 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCC--------CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHH
Confidence 569999999999999887532 1234999999999999999999999854321 1100 111112
Q ss_pred ccccccccccCCCCCccccccCcchhHHHHhC----CCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeE
Q 003088 699 MERHTVSKLIGSPPGYVGYEEGGLLTEAIRRR----PFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNAL 774 (849)
Q Consensus 699 ~~~~~~~~l~g~~~g~vg~~~~~~l~~~i~~~----~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~ 774 (849)
.....+.-+.-.+.+..|.+....+.+.+... .+.|+||||+|.++...+|.|++.||+ ...+++
T Consensus 96 ~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEe-----------Pp~~~~ 164 (598)
T PRK09111 96 MEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEE-----------PPPHVK 164 (598)
T ss_pred hcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHh-----------CCCCeE
Confidence 21111111111112233333323333444333 368999999999999999999999998 345788
Q ss_pred EEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHHHcccc
Q 003088 775 IVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQLP 847 (849)
Q Consensus 775 iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~I~ 847 (849)
||++++.... +.+.+.+|| ..+.|.+++.+++.+.+
T Consensus 165 fIl~tte~~k------------------------------------ll~tI~SRc-q~~~f~~l~~~el~~~L 200 (598)
T PRK09111 165 FIFATTEIRK------------------------------------VPVTVLSRC-QRFDLRRIEADVLAAHL 200 (598)
T ss_pred EEEEeCChhh------------------------------------hhHHHHhhe-eEEEecCCCHHHHHHHH
Confidence 8887753111 446688888 68889999888776543
No 262
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.31 E-value=4.9e-12 Score=145.03 Aligned_cols=173 Identities=23% Similarity=0.314 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCC----Cc
Q 003088 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSE----SS 689 (849)
Q Consensus 614 ~~~~~~~~~l~~~l~~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~----~~ 689 (849)
|..++++..+ +.++||+.++..+..++...+. ...+||+||+|+|||++|+.+|+.+.+.+ .|
T Consensus 6 ~~~kyRP~~f-----~diiGq~~i~~~L~~~i~~~~i--------~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~p 72 (486)
T PRK14953 6 FARKYRPKFF-----KEVIGQEIVVRILKNAVKLQRV--------SHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEP 72 (486)
T ss_pred HHHhhCCCcH-----HHccChHHHHHHHHHHHHcCCC--------CeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCC
Confidence 3444444444 5589999999999888875321 12389999999999999999999985421 11
Q ss_pred eeE-eeccccccccccccccCCCCCccccccCcchhHHHHhC----CCeEEEEeCccccCHHHHHHHHHHhhcCeeecCC
Q 003088 690 MLR-LDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRRR----PFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSH 764 (849)
Q Consensus 690 ~i~-i~~~~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~i~~~----~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~ 764 (849)
+-. .+|..+........+........|.+....+.+.+... .+.|++|||+|.++...+|.|++.|++
T Consensus 73 c~~c~nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEe------- 145 (486)
T PRK14953 73 CGKCENCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEE------- 145 (486)
T ss_pred CCccHHHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhc-------
Confidence 111 12222211111111100111112322223344444433 357999999999999999999999997
Q ss_pred CceeecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHHHc
Q 003088 765 GRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVC 844 (849)
Q Consensus 765 g~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~ 844 (849)
...+++||++++.... +.+.+.+|+ ..+.|.|++.+++.
T Consensus 146 ----pp~~~v~Il~tt~~~k------------------------------------l~~tI~SRc-~~i~f~~ls~~el~ 184 (486)
T PRK14953 146 ----PPPRTIFILCTTEYDK------------------------------------IPPTILSRC-QRFIFSKPTKEQIK 184 (486)
T ss_pred ----CCCCeEEEEEECCHHH------------------------------------HHHHHHHhc-eEEEcCCCCHHHHH
Confidence 2346777777653110 456788888 58899999988876
Q ss_pred ccc
Q 003088 845 QLP 847 (849)
Q Consensus 845 ~I~ 847 (849)
..+
T Consensus 185 ~~L 187 (486)
T PRK14953 185 EYL 187 (486)
T ss_pred HHH
Confidence 543
No 263
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.30 E-value=8.7e-12 Score=136.08 Aligned_cols=175 Identities=19% Similarity=0.255 Sum_probs=107.0
Q ss_pred ccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhc----------CC--CCc-eeEeec
Q 003088 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYF----------GS--ESS-MLRLDM 695 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~----------~~--~~~-~i~i~~ 695 (849)
..|+||++++..+..++... ..+++++.|++|+|||+++++++..+. +. ..| ++..+|
T Consensus 4 ~~ivgq~~~~~al~~~~~~~---------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVIDP---------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMMCEEV 74 (337)
T ss_pred cccccHHHHHHHHHHHhcCC---------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccccChHH
Confidence 56899999998876555432 135699999999999999999998872 10 001 111111
Q ss_pred ccc-------------------ccccccccccCCCC--CccccccCcchhHHHHhCCCeEEEEeCccccCHHHHHHHHHH
Q 003088 696 SEY-------------------MERHTVSKLIGSPP--GYVGYEEGGLLTEAIRRRPFTLLLLDEIEKAHPDIFNILLQV 754 (849)
Q Consensus 696 ~~~-------------------~~~~~~~~l~g~~~--g~vg~~~~~~l~~~i~~~~~~vl~lDEid~l~~~~~~~Ll~~ 754 (849)
... ....+...++|.-. .-...++...-.+.+.++.+++||||||+.+++.+|+.|+++
T Consensus 75 r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~~~Q~~Ll~~ 154 (337)
T TIGR02030 75 RIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLEDHLVDVLLDV 154 (337)
T ss_pred hhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCHHHHHHHHHH
Confidence 110 00011113333210 000000000011234456679999999999999999999999
Q ss_pred hhcCeeec-CCCceeec-CCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccE
Q 003088 755 FEDGHLTD-SHGRRVSF-KNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEV 832 (849)
Q Consensus 755 le~g~~~~-~~g~~~~~-~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~ 832 (849)
|++|.++. ..|..... .++++|+|+|+.. + .|+++|++||...
T Consensus 155 l~~g~~~v~r~G~~~~~~~r~iviat~np~e------g-----------------------------~l~~~LldRf~l~ 199 (337)
T TIGR02030 155 AASGWNVVEREGISIRHPARFVLVGSGNPEE------G-----------------------------ELRPQLLDRFGLH 199 (337)
T ss_pred HHhCCeEEEECCEEEEcCCCEEEEecccccc------C-----------------------------CCCHHHHhhcceE
Confidence 99986332 22333333 3778888887531 1 1889999999988
Q ss_pred EEcCCCCH-HHHcccc
Q 003088 833 VVFRSLEK-AQVCQLP 847 (849)
Q Consensus 833 i~f~pl~~-~~~~~I~ 847 (849)
+.+.++.. ++..+|+
T Consensus 200 i~l~~p~~~eer~eIL 215 (337)
T TIGR02030 200 AEIRTVRDVELRVEIV 215 (337)
T ss_pred EECCCCCCHHHHHHHH
Confidence 88887765 5444443
No 264
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.30 E-value=4.9e-12 Score=124.42 Aligned_cols=151 Identities=25% Similarity=0.383 Sum_probs=90.8
Q ss_pred ccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCcee-Eeeccc---cccc-cccccc
Q 003088 633 GQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSML-RLDMSE---YMER-HTVSKL 707 (849)
Q Consensus 633 Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i-~i~~~~---~~~~-~~~~~l 707 (849)
||+.+++.|...+...+. ...+||+||+|+||+++|..+++.+++....-. .-.|.. +... +.....
T Consensus 1 gq~~~~~~L~~~~~~~~l--------~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~ 72 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRL--------PHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFII 72 (162)
T ss_dssp S-HHHHHHHHHHHHCTC----------SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEE
T ss_pred CcHHHHHHHHHHHHcCCc--------ceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEE
Confidence 789999999888865321 123899999999999999999999976543211 111111 1111 111111
Q ss_pred cCCCCC--ccccccCcchhHHHHh----CCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCC
Q 003088 708 IGSPPG--YVGYEEGGLLTEAIRR----RPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNV 781 (849)
Q Consensus 708 ~g~~~g--~vg~~~~~~l~~~i~~----~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~ 781 (849)
+..... .++.++...+.+.+.. .++.|++|||+|+|+.+++|+||+.||+ +..+++||++|+.
T Consensus 73 ~~~~~~~~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEe-----------pp~~~~fiL~t~~ 141 (162)
T PF13177_consen 73 IKPDKKKKSIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEE-----------PPENTYFILITNN 141 (162)
T ss_dssp EETTTSSSSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHS-----------TTTTEEEEEEES-
T ss_pred EecccccchhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcC-----------CCCCEEEEEEECC
Confidence 111111 1222221222222222 3467999999999999999999999999 4468999998885
Q ss_pred CchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCC
Q 003088 782 GSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLE 839 (849)
Q Consensus 782 ~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~ 839 (849)
... +.|.+.+|+ ..+.|.|++
T Consensus 142 ~~~------------------------------------il~TI~SRc-~~i~~~~ls 162 (162)
T PF13177_consen 142 PSK------------------------------------ILPTIRSRC-QVIRFRPLS 162 (162)
T ss_dssp GGG------------------------------------S-HHHHTTS-EEEEE----
T ss_pred hHH------------------------------------ChHHHHhhc-eEEecCCCC
Confidence 321 779999999 899999875
No 265
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.30 E-value=3.3e-11 Score=121.96 Aligned_cols=160 Identities=19% Similarity=0.189 Sum_probs=108.0
Q ss_pred HHHHHHhcCCCC-CCeEeCCCCChHHHHHHHHHHHhhhCCCCcccc---------------CCeEEEeehhhhhcccccc
Q 003088 301 RIIQILCRRTKN-NPILLGESGVGKTAIAEGLAIRIVQAEVPVFLL---------------SKRIMSLDMGLLMAGAKER 364 (849)
Q Consensus 301 ~l~~~l~~~~~~-niLL~GppGtGKT~la~~la~~l~~~~~p~~~~---------------~~~~~~l~~~~~~~~~~~~ 364 (849)
.+.+.+..++.+ .+||+||+|+|||++|+.+++.+.... +.... ...+..++... . ..
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~-~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~----~-~~ 76 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQ-PGGGEPCGECPSCRLIEAGNHPDLHRLEPEG----Q-SI 76 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCCCcEEEecccc----C-cC
Confidence 345555555554 489999999999999999999986531 00000 00111111110 0 01
Q ss_pred chHHHHHHHHHHHHHh----cCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCC--CeEEEEccChHHHHHH
Q 003088 365 GELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG--ELQCIASTTQDEHRTQ 438 (849)
Q Consensus 365 g~~e~~l~~l~~~~~~----~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~--~i~vI~at~~~~~~~~ 438 (849)
..+.++.+++.+.. ++..|+||||+|.+ ..++++.|+.++++. ...+|++|+...
T Consensus 77 --~~~~i~~i~~~~~~~~~~~~~kviiide~~~l-------------~~~~~~~Ll~~le~~~~~~~~il~~~~~~---- 137 (188)
T TIGR00678 77 --KVDQVRELVEFLSRTPQESGRRVVIIEDAERM-------------NEAAANALLKTLEEPPPNTLFILITPSPE---- 137 (188)
T ss_pred --CHHHHHHHHHHHccCcccCCeEEEEEechhhh-------------CHHHHHHHHHHhcCCCCCeEEEEEECChH----
Confidence 12345555665543 45679999999999 345678888888863 366666666443
Q ss_pred hhccHHHHhccccEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhcc
Q 003088 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496 (849)
Q Consensus 439 ~~~d~al~~Rf~~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~ 496 (849)
.+.+++++|++.+.|++|+.++..++|... + ++++++..++..+++.
T Consensus 138 -~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--------g--i~~~~~~~i~~~~~g~ 184 (188)
T TIGR00678 138 -KLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--------G--ISEEAAELLLALAGGS 184 (188)
T ss_pred -hChHHHHhhcEEeeCCCCCHHHHHHHHHHc--------C--CCHHHHHHHHHHcCCC
Confidence 678999999999999999999988888543 3 7888888888887764
No 266
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.30 E-value=5.2e-12 Score=115.88 Aligned_cols=106 Identities=31% Similarity=0.469 Sum_probs=65.9
Q ss_pred cceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccccccCCC-----CCccccccCcchhHHHHhCCCeEE
Q 003088 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSP-----PGYVGYEEGGLLTEAIRRRPFTLL 735 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~-----~g~vg~~~~~~l~~~i~~~~~~vl 735 (849)
|+|++|+||+|||++|+++|+.+ +..|.++.+..- ..++++.|.+ .+...+.. +.+. ..|+
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~---~~~f~RIq~tpd---llPsDi~G~~v~~~~~~~f~~~~-GPif-------~~il 66 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSL---GLSFKRIQFTPD---LLPSDILGFPVYDQETGEFEFRP-GPIF-------TNIL 66 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHT---T--EEEEE--TT-----HHHHHEEEEEETTTTEEEEEE--TT--------SSEE
T ss_pred CEeeECCCccHHHHHHHHHHHHc---CCceeEEEecCC---CCcccceeeeeeccCCCeeEeec-Chhh-------hcee
Confidence 59999999999999999999997 456888877521 2245555532 11111111 1111 2599
Q ss_pred EEeCccccCHHHHHHHHHHhhcCeeecCCCceeecC-CeEEEEecCC
Q 003088 736 LLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFK-NALIVMTSNV 781 (849)
Q Consensus 736 ~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~-~~~iI~tsn~ 781 (849)
++|||.+++|.+|++||++|++++++. .|.+...+ .+.||+|.|+
T Consensus 67 l~DEiNrappktQsAlLeam~Er~Vt~-~g~~~~lp~pf~ViATqNp 112 (131)
T PF07726_consen 67 LADEINRAPPKTQSALLEAMEERQVTI-DGQTYPLPDPFFVIATQNP 112 (131)
T ss_dssp EEETGGGS-HHHHHHHHHHHHHSEEEE-TTEEEE--SS-EEEEEE-T
T ss_pred eecccccCCHHHHHHHHHHHHcCeEEe-CCEEEECCCcEEEEEecCc
Confidence 999999999999999999999999886 34556666 5788889897
No 267
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=1.5e-10 Score=128.05 Aligned_cols=214 Identities=21% Similarity=0.257 Sum_probs=143.0
Q ss_pred CccccHHHHHHHHHHH----hcCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCC--ccccCCeEEEee---hhhhhc--
Q 003088 291 PVIGRETEIQRIIQIL----CRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVP--VFLLSKRIMSLD---MGLLMA-- 359 (849)
Q Consensus 291 ~iiG~~~~i~~l~~~l----~~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p--~~~~~~~~~~l~---~~~~~~-- 359 (849)
.+.+|+++++++..++ ....+.|++++|+||||||++++.+++++...... ..+.+|..+.-- +..+..
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~ 97 (366)
T COG1474 18 ELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKL 97 (366)
T ss_pred cccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHc
Confidence 3788999999988866 33566789999999999999999999998653111 122222221110 011111
Q ss_pred -cccccc-hHHHHHHHHHHHHHh-cCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhc--CCCeEEEEccChHH
Q 003088 360 -GAKERG-ELEARVTTLISEIQK-SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG--RGELQCIASTTQDE 434 (849)
Q Consensus 360 -~~~~~g-~~e~~l~~l~~~~~~-~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le--~~~i~vI~at~~~~ 434 (849)
.....| ...+.++.+.+.+.. ....|++|||++.|+... + ++.-.|..... ..++.+|+.+|...
T Consensus 98 ~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~---------~-~~LY~L~r~~~~~~~~v~vi~i~n~~~ 167 (366)
T COG1474 98 GKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKD---------G-EVLYSLLRAPGENKVKVSIIAVSNDDK 167 (366)
T ss_pred CCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhcccc---------c-hHHHHHHhhccccceeEEEEEEeccHH
Confidence 111222 233334444444444 456899999999996431 1 33333333222 34568899999887
Q ss_pred HHHHhhccHHHHhccc--cEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhcccccCcchhhHHHHHHH
Q 003088 435 HRTQFEKDKALARRFQ--PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDE 512 (849)
Q Consensus 435 ~~~~~~~d~al~~Rf~--~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~~~r~~p~~ai~ll~~ 512 (849)
|.. .+++.+.++|. .|.|++++.+|...||....+.. ...-.++++++..++..+...-.+ -.+|++++..
T Consensus 168 ~~~--~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~--~~~~~~~~~vl~lia~~~a~~~GD---AR~aidilr~ 240 (366)
T COG1474 168 FLD--YLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEG--FSAGVIDDDVLKLIAALVAAESGD---ARKAIDILRR 240 (366)
T ss_pred HHH--HhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhh--ccCCCcCccHHHHHHHHHHHcCcc---HHHHHHHHHH
Confidence 744 67899999996 48999999999999998877632 445678999999988887765432 3589999999
Q ss_pred HhhHHHHhh
Q 003088 513 AGSRAHIEL 521 (849)
Q Consensus 513 a~~~~~~~~ 521 (849)
|+..+..+.
T Consensus 241 A~eiAe~~~ 249 (366)
T COG1474 241 AGEIAEREG 249 (366)
T ss_pred HHHHHHhhC
Confidence 988776443
No 268
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.30 E-value=5.6e-11 Score=129.16 Aligned_cols=194 Identities=15% Similarity=0.191 Sum_probs=127.0
Q ss_pred CCCCccccHHHHHHHHHHHhcCCC-CCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCC--------eEEEeehhhhh
Q 003088 288 LIDPVIGRETEIQRIIQILCRRTK-NNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSK--------RIMSLDMGLLM 358 (849)
Q Consensus 288 ~l~~iiG~~~~i~~l~~~l~~~~~-~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~--------~~~~l~~~~~~ 358 (849)
.|++++|++..++.+...+...+. ...||+||+|+||+++|.++|+.+.+.........+ .++.+......
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~ 81 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQH 81 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccc
Confidence 478999999999999999977764 667999999999999999999998765421111111 11211111000
Q ss_pred cccc-------ccc--------hHHHHHHHHHHHHHh----cCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhh
Q 003088 359 AGAK-------ERG--------ELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL 419 (849)
Q Consensus 359 ~~~~-------~~g--------~~e~~l~~l~~~~~~----~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~l 419 (849)
.|.. ..| -..+.++.+.+.+.. ++..|++||++|.| ...++|.|++.|
T Consensus 82 ~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m-------------~~~aaNaLLK~L 148 (314)
T PRK07399 82 QGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETM-------------NEAAANALLKTL 148 (314)
T ss_pred cccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhc-------------CHHHHHHHHHHH
Confidence 0100 000 012234555555442 45689999999999 567789999999
Q ss_pred cCC-CeEEEEccChHHHHHHhhccHHHHhccccEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhcccc
Q 003088 420 GRG-ELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498 (849)
Q Consensus 420 e~~-~i~vI~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~~ 498 (849)
|.+ +.++|..|+..+ .+-+++++||+.+.|++++.++..++|..... ..... ..+..++.++++
T Consensus 149 EEPp~~~fILi~~~~~-----~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~----~~~~~---~~~~~l~~~a~G--- 213 (314)
T PRK07399 149 EEPGNGTLILIAPSPE-----SLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGD----EEILN---INFPELLALAQG--- 213 (314)
T ss_pred hCCCCCeEEEEECChH-----hCcHHHHhhceEEecCCCCHHHHHHHHHHhhc----cccch---hHHHHHHHHcCC---
Confidence 843 445666666665 78899999999999999999999999876432 11111 123455555554
Q ss_pred cCcchhhHHHHHHH
Q 003088 499 DRYLPDKAIDLVDE 512 (849)
Q Consensus 499 ~r~~p~~ai~ll~~ 512 (849)
-|.+|+.+++.
T Consensus 214 ---s~~~al~~l~~ 224 (314)
T PRK07399 214 ---SPGAAIANIEQ 224 (314)
T ss_pred ---CHHHHHHHHHH
Confidence 34566666543
No 269
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.29 E-value=8.9e-12 Score=143.37 Aligned_cols=162 Identities=22% Similarity=0.300 Sum_probs=102.9
Q ss_pred ccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCC---ceeEe-ecccccccccc
Q 003088 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSES---SMLRL-DMSEYMERHTV 704 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~---~~i~i-~~~~~~~~~~~ 704 (849)
++|+||+.+++.|...+...+. ...+||+||||||||++|+++++.+...+. ++..+ .|..+......
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~l--------~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~ 85 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGRL--------GHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHP 85 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCCC--------CeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCC
Confidence 5589999999999888875321 123699999999999999999999853221 11100 11111111000
Q ss_pred c-cccCCCCCccccccCcchhHHHHh----CCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEec
Q 003088 705 S-KLIGSPPGYVGYEEGGLLTEAIRR----RPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTS 779 (849)
Q Consensus 705 ~-~l~g~~~g~vg~~~~~~l~~~i~~----~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ts 779 (849)
. ..++. .+..+......+.+.+.. ..+.||||||+|.++...++.|++.|++ +..+++||+++
T Consensus 86 dv~el~~-~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEe-----------p~~~t~~Il~t 153 (504)
T PRK14963 86 DVLEIDA-ASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEE-----------PPEHVIFILAT 153 (504)
T ss_pred ceEEecc-cccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHh-----------CCCCEEEEEEc
Confidence 0 00111 111222211223333332 2357999999999999999999999998 23467888887
Q ss_pred CCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHHHcccc
Q 003088 780 NVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQLP 847 (849)
Q Consensus 780 n~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~I~ 847 (849)
+... .+.+.+.+|+ ..+.|.|++.+++.+.+
T Consensus 154 ~~~~------------------------------------kl~~~I~SRc-~~~~f~~ls~~el~~~L 184 (504)
T PRK14963 154 TEPE------------------------------------KMPPTILSRT-QHFRFRRLTEEEIAGKL 184 (504)
T ss_pred CChh------------------------------------hCChHHhcce-EEEEecCCCHHHHHHHH
Confidence 7421 1667888888 68899999988876554
No 270
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.29 E-value=8.1e-11 Score=128.34 Aligned_cols=171 Identities=22% Similarity=0.279 Sum_probs=109.5
Q ss_pred hhHHHHhhc-CCCCccccHHHHHHHHHHHhcCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEE-------
Q 003088 279 DLTARASEE-LIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIM------- 350 (849)
Q Consensus 279 ~l~~~~~~~-~l~~iiG~~~~i~~l~~~l~~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~------- 350 (849)
+++++.++- -|.++||+++.+..|+..+..+...++||.|++|||||++|+++++.+....+.. ++++.
T Consensus 5 ~~~~~~~~~~pf~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~---~~pf~~~p~~p~ 81 (350)
T CHL00081 5 NLKKKERPVFPFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVK---DDPFNSHPSDPE 81 (350)
T ss_pred chhhccCCCCCHHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccC---CCCCCCCCCChh
Confidence 344444443 3778999999999999988888888999999999999999999998886533211 11110
Q ss_pred --Eeehhhhhcc----------cc----ccchHHHHH------HHHHHH---------HHhcCCeEEEEcCcchhhhCCC
Q 003088 351 --SLDMGLLMAG----------AK----ERGELEARV------TTLISE---------IQKSGDVILFIDEVHTLIGSGT 399 (849)
Q Consensus 351 --~l~~~~~~~~----------~~----~~g~~e~~l------~~l~~~---------~~~~~~~ILfIDEi~~l~~~~~ 399 (849)
.-++.....+ .. ..|-.++++ ...+.. +....+++|||||++.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL----- 156 (350)
T CHL00081 82 LMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLL----- 156 (350)
T ss_pred hhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhC-----
Confidence 0000000000 00 001111111 111110 11234579999999999
Q ss_pred CCCCCCCccHHHHHHHhhhhcCC---------------CeEEEEccChHHHHHHhhccHHHHhccc-cEEecCCC-HHHH
Q 003088 400 VGRGNKGTGLDISNLLKPSLGRG---------------ELQCIASTTQDEHRTQFEKDKALARRFQ-PVLISEPS-QEDA 462 (849)
Q Consensus 400 ~~~~~~~~~~~~~~~L~~~le~~---------------~i~vI~at~~~~~~~~~~~d~al~~Rf~-~i~~~~ps-~~e~ 462 (849)
....++.|...++.+ ++++|++.|+.+ -.+.+++..||. .+.+..|+ .+++
T Consensus 157 --------~~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~e----g~l~~~LldRf~l~i~l~~~~~~~~e 224 (350)
T CHL00081 157 --------DDHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEE----GELRPQLLDRFGMHAEIRTVKDPELR 224 (350)
T ss_pred --------CHHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCccc----CCCCHHHHHHhCceeecCCCCChHHH
Confidence 456677777777542 356777777654 257899999998 69999997 5999
Q ss_pred HHHHHHH
Q 003088 463 VRILLGL 469 (849)
Q Consensus 463 ~~iL~~~ 469 (849)
.+|++..
T Consensus 225 ~~il~~~ 231 (350)
T CHL00081 225 VKIVEQR 231 (350)
T ss_pred HHHHHhh
Confidence 9999764
No 271
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.29 E-value=2.1e-10 Score=117.18 Aligned_cols=166 Identities=21% Similarity=0.279 Sum_probs=120.3
Q ss_pred cCCCCccccHHHHHHHHH----HHhcCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhcccc
Q 003088 287 ELIDPVIGRETEIQRIIQ----ILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAK 362 (849)
Q Consensus 287 ~~l~~iiG~~~~i~~l~~----~l~~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~~~~ 362 (849)
-.+++++|.+.+.+.|++ ++.....+|+||+|+.|||||++++++..+.... +.++++++-..+.
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~-------GLRlIev~k~~L~---- 92 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQ-------GLRLIEVSKEDLG---- 92 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhc-------CceEEEECHHHhc----
Confidence 346789999998888776 4566778999999999999999999999998654 6888888654443
Q ss_pred ccchHHHHHHHHHHHHHh-cCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcC------CCeEEEEccChHHH
Q 003088 363 ERGELEARVTTLISEIQK-SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR------GELQCIASTTQDEH 435 (849)
Q Consensus 363 ~~g~~e~~l~~l~~~~~~-~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~------~~i~vI~at~~~~~ 435 (849)
.+..+++.++. ..+-|||+||+- |+. ...-...|+.+|+. .++.+.+|+|.-..
T Consensus 93 -------~l~~l~~~l~~~~~kFIlf~DDLs--Fe~----------~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHL 153 (249)
T PF05673_consen 93 -------DLPELLDLLRDRPYKFILFCDDLS--FEE----------GDTEYKALKSVLEGGLEARPDNVLIYATSNRRHL 153 (249)
T ss_pred -------cHHHHHHHHhcCCCCEEEEecCCC--CCC----------CcHHHHHHHHHhcCccccCCCcEEEEEecchhhc
Confidence 15566666664 357899999865 322 22345778887773 35777787775332
Q ss_pred HHHhh----------cc--------HHHHhccc-cEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHH
Q 003088 436 RTQFE----------KD--------KALARRFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAI 486 (849)
Q Consensus 436 ~~~~~----------~d--------~al~~Rf~-~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l 486 (849)
.+-.. ++ -+|..||. .|.|.+|+.++-.+|++.+++ ..++.++++.+
T Consensus 154 v~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~----~~g~~~~~e~l 219 (249)
T PF05673_consen 154 VPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAE----RYGLELDEEEL 219 (249)
T ss_pred cchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHH----HcCCCCCHHHH
Confidence 21110 11 25666997 699999999999999999887 56888886544
No 272
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.29 E-value=4e-11 Score=130.57 Aligned_cols=164 Identities=22% Similarity=0.303 Sum_probs=102.6
Q ss_pred hcCCCCccccHHHHHHHHHHHhcCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccc-------cC------------
Q 003088 286 EELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFL-------LS------------ 346 (849)
Q Consensus 286 ~~~l~~iiG~~~~i~~l~~~l~~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~-------~~------------ 346 (849)
|..|.+++|+++.++.+...+-.....|+||.|+||||||++|++++..+..-.....+ ..
T Consensus 4 ~~~f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 83 (334)
T PRK13407 4 PFPFSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWAHVSSTTM 83 (334)
T ss_pred CCCHHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCcccccccCCcc
Confidence 34577899999999988765543455789999999999999999999998421110000 00
Q ss_pred ----CeEEEeehhh---hhccccccchHHHHHHH---HHH--HHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHH
Q 003088 347 ----KRIMSLDMGL---LMAGAKERGELEARVTT---LIS--EIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNL 414 (849)
Q Consensus 347 ----~~~~~l~~~~---~~~~~~~~g~~e~~l~~---l~~--~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~ 414 (849)
.++..+-.+. -+.|.- +++..++. .++ .+....+++|||||++.+ ..+.++.
T Consensus 84 ~~~~~p~~~~p~~~t~~~l~G~~---d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl-------------~~~~q~~ 147 (334)
T PRK13407 84 IERPTPVVDLPLGVTEDRVVGAL---DIERALTRGEKAFEPGLLARANRGYLYIDEVNLL-------------EDHIVDL 147 (334)
T ss_pred cccCCccccCCCCCCcceeecch---hhhhhhhcCCeeecCCceEEcCCCeEEecChHhC-------------CHHHHHH
Confidence 0000000000 000100 11111100 000 011233469999999999 4667888
Q ss_pred HhhhhcCCC---------------eEEEEccChHHHHHHhhccHHHHhccc-cEEecCCCH-HHHHHHHHHH
Q 003088 415 LKPSLGRGE---------------LQCIASTTQDEHRTQFEKDKALARRFQ-PVLISEPSQ-EDAVRILLGL 469 (849)
Q Consensus 415 L~~~le~~~---------------i~vI~at~~~~~~~~~~~d~al~~Rf~-~i~~~~ps~-~e~~~iL~~~ 469 (849)
|...++.+. +++|+++|+.+ ..+.+++..||. .|.+++|+. +++.+|+...
T Consensus 148 Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e----~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~ 215 (334)
T PRK13407 148 LLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEE----GELRPQLLDRFGLSVEVRSPRDVETRVEVIRRR 215 (334)
T ss_pred HHHHHHcCCeEEEECCeEEecCCCEEEEecCCccc----CCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHh
Confidence 888886543 57788888754 257899999997 688888866 8999999763
No 273
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.28 E-value=1.5e-11 Score=131.39 Aligned_cols=78 Identities=21% Similarity=0.373 Sum_probs=55.1
Q ss_pred eEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCchhhhccc-CCccccccccCCcccHHhHHH
Q 003088 733 TLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKGR-HGSIGFLLEDNESTSYAGMKT 811 (849)
Q Consensus 733 ~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~~~~-~~~~gf~~~~~~~~~~~~~~~ 811 (849)
|||||||++.|+.+.+..|-++||.. -..++|++||.+...+.... .++.|
T Consensus 280 GVLFIDEvHmLDiEcFsfLnralEs~------------~sPiiIlATNRg~~~irGt~~~sphG---------------- 331 (398)
T PF06068_consen 280 GVLFIDEVHMLDIECFSFLNRALESE------------LSPIIILATNRGITKIRGTDIISPHG---------------- 331 (398)
T ss_dssp -EEEEESGGGSBHHHHHHHHHHHTST------------T--EEEEEES-SEEE-BTTS-EEETT----------------
T ss_pred ceEEecchhhccHHHHHHHHHHhcCC------------CCcEEEEecCceeeeccCccCcCCCC----------------
Confidence 79999999999999999999999972 25689999999866543221 11222
Q ss_pred HHHHHHHhhCChHHhhccccEEEcCCCCHHHHccccC
Q 003088 812 LVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQLPL 848 (849)
Q Consensus 812 ~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~I~~ 848 (849)
++.+|++|+ .+|.-.||+.+++.+|++
T Consensus 332 ---------iP~DlLDRl-lII~t~py~~~ei~~Il~ 358 (398)
T PF06068_consen 332 ---------IPLDLLDRL-LIIRTKPYSEEEIKQILK 358 (398)
T ss_dssp -----------HHHHTTE-EEEEE----HHHHHHHHH
T ss_pred ---------CCcchHhhc-EEEECCCCCHHHHHHHHH
Confidence 789999999 999999999999999975
No 274
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.28 E-value=1e-11 Score=141.64 Aligned_cols=161 Identities=20% Similarity=0.332 Sum_probs=105.2
Q ss_pred ccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCC-----cee-Eeecccccccc
Q 003088 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSES-----SML-RLDMSEYMERH 702 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~-----~~i-~i~~~~~~~~~ 702 (849)
++|+||+.++..+...+...+. ..++||+||+|+|||++|+.+|+.+.+... ++. ..+|..+....
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~i--------~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~ 88 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNRA--------AHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGT 88 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC--------ceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCC
Confidence 5699999999999888875321 134999999999999999999999865311 111 11122221111
Q ss_pred c--cccccCCCCCccccccCcchhHHHH----hCCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEE
Q 003088 703 T--VSKLIGSPPGYVGYEEGGLLTEAIR----RRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIV 776 (849)
Q Consensus 703 ~--~~~l~g~~~g~vg~~~~~~l~~~i~----~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI 776 (849)
. ...+-|. ...|.+....+.+.+. ...+.|++|||+|.++...++.|++.||+ ...+++||
T Consensus 89 ~~d~~~i~g~--~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEe-----------p~~~~~~I 155 (451)
T PRK06305 89 SLDVLEIDGA--SHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEE-----------PPQHVKFF 155 (451)
T ss_pred CCceEEeecc--ccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhc-----------CCCCceEE
Confidence 0 1111121 1223222222222222 24578999999999999999999999998 23467888
Q ss_pred EecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHHHcccc
Q 003088 777 MTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQLP 847 (849)
Q Consensus 777 ~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~I~ 847 (849)
+++|... .+.+.+.+|+ ..+.|.+++.+++.+.+
T Consensus 156 l~t~~~~------------------------------------kl~~tI~sRc-~~v~f~~l~~~el~~~L 189 (451)
T PRK06305 156 LATTEIH------------------------------------KIPGTILSRC-QKMHLKRIPEETIIDKL 189 (451)
T ss_pred EEeCChH------------------------------------hcchHHHHhc-eEEeCCCCCHHHHHHHH
Confidence 8776321 1567888999 68899999988876543
No 275
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.28 E-value=2.2e-10 Score=120.62 Aligned_cols=215 Identities=20% Similarity=0.224 Sum_probs=141.1
Q ss_pred CCccccH---HHHHHHHHHHhc---CCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhh-------
Q 003088 290 DPVIGRE---TEIQRIIQILCR---RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGL------- 356 (849)
Q Consensus 290 ~~iiG~~---~~i~~l~~~l~~---~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~------- 356 (849)
+.+||.. +.++++.+++.. .+.+|+||+|++|.|||++++.+++.-.....+. ...++|+.+.+..
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~-~~~~PVv~vq~P~~p~~~~~ 112 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDED-AERIPVVYVQMPPEPDERRF 112 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCC-CccccEEEEecCCCCChHHH
Confidence 4677776 344556666644 3458999999999999999999987653221111 1234666665321
Q ss_pred -------hhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCCCeEEEEc
Q 003088 357 -------LMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIAS 429 (849)
Q Consensus 357 -------~~~~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~~i~vI~a 429 (849)
+.+..+.+.........++.-++..+.-+|+|||+|.+...+. ....++.|.|+.+-..-++.+|+.
T Consensus 113 Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~------~~qr~~Ln~LK~L~NeL~ipiV~v 186 (302)
T PF05621_consen 113 YSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSY------RKQREFLNALKFLGNELQIPIVGV 186 (302)
T ss_pred HHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccH------HHHHHHHHHHHHHhhccCCCeEEe
Confidence 2222222333333344444555566677999999999853211 236778899988877788999999
Q ss_pred cChHHHHHHhhccHHHHhccccEEecCCCHH-HHHHHHHHHHHHHHhhcCCccC-HHHHHHHHHhhhcccccCcchhhHH
Q 003088 430 TTQDEHRTQFEKDKALARRFQPVLISEPSQE-DAVRILLGLREKYEAHHNCKFT-LEAINAAVHLSARYISDRYLPDKAI 507 (849)
Q Consensus 430 t~~~~~~~~~~~d~al~~Rf~~i~~~~ps~~-e~~~iL~~~~~~~~~~~~~~i~-~~~l~~~a~ls~~~~~~r~~p~~ai 507 (849)
++.+.|. .+..|+.+.+||..+.++.+..+ +...+|..+-..+.....-.+. ++....+...+.+.+. ...
T Consensus 187 Gt~~A~~-al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG------~l~ 259 (302)
T PF05621_consen 187 GTREAYR-ALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIG------ELS 259 (302)
T ss_pred ccHHHHH-HhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchH------HHH
Confidence 9998876 57789999999999999988443 4555555554444333333444 4455788888888774 566
Q ss_pred HHHHHHhhHHH
Q 003088 508 DLVDEAGSRAH 518 (849)
Q Consensus 508 ~ll~~a~~~~~ 518 (849)
.++..|+..+.
T Consensus 260 ~ll~~aA~~AI 270 (302)
T PF05621_consen 260 RLLNAAAIAAI 270 (302)
T ss_pred HHHHHHHHHHH
Confidence 77777765543
No 276
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.27 E-value=5.3e-12 Score=142.70 Aligned_cols=163 Identities=22% Similarity=0.375 Sum_probs=112.2
Q ss_pred HhccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCC----CceeEee-ccccccc
Q 003088 627 LKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSE----SSMLRLD-MSEYMER 701 (849)
Q Consensus 627 l~~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~----~~~i~i~-~~~~~~~ 701 (849)
-+++++||+.+.+.|..++...+.. ..+||.||-|||||++||.+|+.+...+ .||..+. |-++...
T Consensus 14 ~F~evvGQe~v~~~L~nal~~~ri~--------hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g 85 (515)
T COG2812 14 TFDDVVGQEHVVKTLSNALENGRIA--------HAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEG 85 (515)
T ss_pred cHHHhcccHHHHHHHHHHHHhCcch--------hhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcC
Confidence 3466899999999999999875432 2499999999999999999999985442 2332221 1112111
Q ss_pred cccccccC-CCCCccccccCcchhHHHHhC----CCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEE
Q 003088 702 HTVSKLIG-SPPGYVGYEEGGLLTEAIRRR----PFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIV 776 (849)
Q Consensus 702 ~~~~~l~g-~~~g~vg~~~~~~l~~~i~~~----~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI 776 (849)
...+++- ......|.++.+.+.+.+.-. .+.|++|||++.++..++|+||+.+|+ ++.+++||
T Consensus 86 -~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEE-----------PP~hV~FI 153 (515)
T COG2812 86 -SLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEE-----------PPSHVKFI 153 (515)
T ss_pred -CcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhccccc-----------CccCeEEE
Confidence 1111111 011223444444444444433 367999999999999999999999999 56799999
Q ss_pred EecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHHHccc
Q 003088 777 MTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQL 846 (849)
Q Consensus 777 ~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~I 846 (849)
++|.-.-. +++.+++|| ..+.|..++.++|..-
T Consensus 154 lATTe~~K------------------------------------ip~TIlSRc-q~f~fkri~~~~I~~~ 186 (515)
T COG2812 154 LATTEPQK------------------------------------IPNTILSRC-QRFDFKRLDLEEIAKH 186 (515)
T ss_pred EecCCcCc------------------------------------Cchhhhhcc-ccccccCCCHHHHHHH
Confidence 97764211 678888999 7888999888877543
No 277
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=9.3e-12 Score=131.88 Aligned_cols=157 Identities=24% Similarity=0.285 Sum_probs=99.0
Q ss_pred cccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccccccC
Q 003088 630 RVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIG 709 (849)
Q Consensus 630 ~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g 709 (849)
.||-+....+.|.+.. .+-.+.+....|..+||||||||||||++|+.||... |-+. -.....++
T Consensus 356 ~ViL~psLe~Rie~lA-~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~S-GlDY--A~mTGGDV----------- 420 (630)
T KOG0742|consen 356 GVILHPSLEKRIEDLA-IATANTKKHQAPFRNILFYGPPGTGKTMFARELARHS-GLDY--AIMTGGDV----------- 420 (630)
T ss_pred CeecCHHHHHHHHHHH-HHhcccccccchhhheeeeCCCCCCchHHHHHHHhhc-CCce--ehhcCCCc-----------
Confidence 3444444444443322 2333344446777899999999999999999999875 2111 11111111
Q ss_pred CCCCccccccCcchhHHHHhCC-CeEEEEeCcccc---------CH---HHHHHHHHHhhcCeeecCCCceeecCCeEEE
Q 003088 710 SPPGYVGYEEGGLLTEAIRRRP-FTLLLLDEIEKA---------HP---DIFNILLQVFEDGHLTDSHGRRVSFKNALIV 776 (849)
Q Consensus 710 ~~~g~vg~~~~~~l~~~i~~~~-~~vl~lDEid~l---------~~---~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI 776 (849)
.|-|--+....-.++++.+++. +-+|||||+|.+ +. ..+|+||----+ ...+++++
T Consensus 421 APlG~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGd-----------qSrdivLv 489 (630)
T KOG0742|consen 421 APLGAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD-----------QSRDIVLV 489 (630)
T ss_pred cccchHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcc-----------cccceEEE
Confidence 1112222222334566665555 458999999965 22 255555533222 23588999
Q ss_pred EecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHHHccccC
Q 003088 777 MTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQLPL 848 (849)
Q Consensus 777 ~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~I~~ 848 (849)
++||.+-+ |+...-+|||.+|.|+-+.+++..+|+.
T Consensus 490 lAtNrpgd------------------------------------lDsAV~DRide~veFpLPGeEERfkll~ 525 (630)
T KOG0742|consen 490 LATNRPGD------------------------------------LDSAVNDRIDEVVEFPLPGEEERFKLLN 525 (630)
T ss_pred eccCCccc------------------------------------hhHHHHhhhhheeecCCCChHHHHHHHH
Confidence 99997532 7888999999999999999999888765
No 278
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.27 E-value=1.2e-11 Score=136.82 Aligned_cols=159 Identities=22% Similarity=0.327 Sum_probs=104.4
Q ss_pred ccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCC-cee-------Eee-ccccc
Q 003088 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSES-SML-------RLD-MSEYM 699 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~-~~i-------~i~-~~~~~ 699 (849)
++|+||+.+++.|.+++...+. ...+||+||+|+||+++|.++|+.+++... ... .++ |....
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~rl--------~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~ 90 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGRL--------HHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHP 90 (365)
T ss_pred hhccChHHHHHHHHHHHHcCCC--------CceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCCh
Confidence 5699999999999988876432 123999999999999999999999965331 000 000 11100
Q ss_pred cccccccc--cCCCCCc-----------------cccccCcchhHHHHh----CCCeEEEEeCccccCHHHHHHHHHHhh
Q 003088 700 ERHTVSKL--IGSPPGY-----------------VGYEEGGLLTEAIRR----RPFTLLLLDEIEKAHPDIFNILLQVFE 756 (849)
Q Consensus 700 ~~~~~~~l--~g~~~g~-----------------vg~~~~~~l~~~i~~----~~~~vl~lDEid~l~~~~~~~Ll~~le 756 (849)
.... -|..|.+ ++.++...+.+.+.. ..+.|++|||+|.+++..+|.||+.+|
T Consensus 91 ----~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LE 166 (365)
T PRK07471 91 ----VARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLE 166 (365)
T ss_pred ----HHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHh
Confidence 0000 0111111 111111112222221 335799999999999999999999999
Q ss_pred cCeeecCCCceeecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcC
Q 003088 757 DGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFR 836 (849)
Q Consensus 757 ~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~ 836 (849)
+ ...+++||++|+.... +.|.+.+|| ..+.|.
T Consensus 167 e-----------pp~~~~~IL~t~~~~~------------------------------------llpti~SRc-~~i~l~ 198 (365)
T PRK07471 167 E-----------PPARSLFLLVSHAPAR------------------------------------LLPTIRSRC-RKLRLR 198 (365)
T ss_pred c-----------CCCCeEEEEEECCchh------------------------------------chHHhhccc-eEEECC
Confidence 8 2346778887775321 567889999 799999
Q ss_pred CCCHHHHcccc
Q 003088 837 SLEKAQVCQLP 847 (849)
Q Consensus 837 pl~~~~~~~I~ 847 (849)
|++.+++.+++
T Consensus 199 ~l~~~~i~~~L 209 (365)
T PRK07471 199 PLAPEDVIDAL 209 (365)
T ss_pred CCCHHHHHHHH
Confidence 99999987654
No 279
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.26 E-value=1.4e-11 Score=135.61 Aligned_cols=163 Identities=19% Similarity=0.313 Sum_probs=105.8
Q ss_pred ccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCC----ceeE-e---eccc---
Q 003088 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSES----SMLR-L---DMSE--- 697 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~----~~i~-i---~~~~--- 697 (849)
+.++||++++..+..++...+. | ..+||+||+|+|||++|+.+++.+.+... +... . +|..
T Consensus 23 ~~l~Gh~~a~~~L~~a~~~grl-------~-ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~ 94 (351)
T PRK09112 23 TRLFGHEEAEAFLAQAYREGKL-------H-HALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQ 94 (351)
T ss_pred hhccCcHHHHHHHHHHHHcCCC-------C-eeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHH
Confidence 5699999999999888875421 1 23999999999999999999999865321 1110 0 1111
Q ss_pred cccccccc-cccCCCC--------CccccccCcchhHHHHh----CCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCC
Q 003088 698 YMERHTVS-KLIGSPP--------GYVGYEEGGLLTEAIRR----RPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSH 764 (849)
Q Consensus 698 ~~~~~~~~-~l~g~~~--------g~vg~~~~~~l~~~i~~----~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~ 764 (849)
+.....+. ..+..+. ..++.++...+.+.+.. ..+.|++|||+|.|++..+|.||+.||+
T Consensus 95 i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEE------- 167 (351)
T PRK09112 95 IAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEE------- 167 (351)
T ss_pred HHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhc-------
Confidence 00000000 0011110 01111221223333332 3457999999999999999999999998
Q ss_pred CceeecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHHHc
Q 003088 765 GRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVC 844 (849)
Q Consensus 765 g~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~ 844 (849)
+..+++||+.|+.... +.|.+.+|| ..+.|+|++.+++.
T Consensus 168 ----pp~~~~fiLit~~~~~------------------------------------llptIrSRc-~~i~l~pl~~~~~~ 206 (351)
T PRK09112 168 ----PPARALFILISHSSGR------------------------------------LLPTIRSRC-QPISLKPLDDDELK 206 (351)
T ss_pred ----CCCCceEEEEECChhh------------------------------------ccHHHHhhc-cEEEecCCCHHHHH
Confidence 2346677777654211 568999999 79999999999988
Q ss_pred ccc
Q 003088 845 QLP 847 (849)
Q Consensus 845 ~I~ 847 (849)
+++
T Consensus 207 ~~L 209 (351)
T PRK09112 207 KAL 209 (351)
T ss_pred HHH
Confidence 765
No 280
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=9.2e-11 Score=121.32 Aligned_cols=175 Identities=23% Similarity=0.313 Sum_probs=119.1
Q ss_pred CCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhccccccc-hHHHHHHHHHHHHH----hcCCe
Q 003088 310 TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERG-ELEARVTTLISEIQ----KSGDV 384 (849)
Q Consensus 310 ~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~~~~~~g-~~e~~l~~l~~~~~----~~~~~ 384 (849)
.+.|+||+||+|+|||.+|+.||+.+ +|| +--.|...+.. +.|.| +.|..+-++++.+. ....+
T Consensus 96 ~KSNILLiGPTGsGKTlLAqTLAk~L---nVP-------FaiADATtLTE-AGYVGEDVENillkLlqaadydV~rAerG 164 (408)
T COG1219 96 SKSNILLIGPTGSGKTLLAQTLAKIL---NVP-------FAIADATTLTE-AGYVGEDVENILLKLLQAADYDVERAERG 164 (408)
T ss_pred eeccEEEECCCCCcHHHHHHHHHHHh---CCC-------eeeccccchhh-ccccchhHHHHHHHHHHHcccCHHHHhCC
Confidence 46899999999999999999999999 444 44455555543 34566 57777777777653 35567
Q ss_pred EEEEcCcchhhhCCCCCCCCC-CccHHHHHHHhhhhcC-----------------------CCeEEEEccChH-------
Q 003088 385 ILFIDEVHTLIGSGTVGRGNK-GTGLDISNLLKPSLGR-----------------------GELQCIASTTQD------- 433 (849)
Q Consensus 385 ILfIDEi~~l~~~~~~~~~~~-~~~~~~~~~L~~~le~-----------------------~~i~vI~at~~~------- 433 (849)
|+||||||.+...+.+.+... -++.-+++.|+.++|. .++.||+.+-..
T Consensus 165 IIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGTvasVPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~ 244 (408)
T COG1219 165 IIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEFIQVDTSNILFICGGAFAGLEKIIK 244 (408)
T ss_pred eEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCceeccCCCCCCCCCccceEEEcccceeEEeccccccHHHHHH
Confidence 999999999976554332222 2455678899888872 224555433111
Q ss_pred ------------------------HHH--------HHhhccHHHHhccc-cEEecCCCHHHHHHHHHH----HHHHHHhh
Q 003088 434 ------------------------EHR--------TQFEKDKALARRFQ-PVLISEPSQEDAVRILLG----LREKYEAH 476 (849)
Q Consensus 434 ------------------------~~~--------~~~~~d~al~~Rf~-~i~~~~ps~~e~~~iL~~----~~~~~~~~ 476 (849)
++- -.|.+-|.|.-|+. ...+.+++.++.++||.. +.++|+.-
T Consensus 245 ~R~~~~~iGF~a~~~~~~~~~~~~~~l~~vepeDLvkFGLIPEfIGRlPvia~L~~Lde~aLv~ILtePkNAlvKQYq~L 324 (408)
T COG1219 245 KRLGKKGIGFGAEVKSKSKKKEEGELLKQVEPEDLVKFGLIPEFIGRLPVIATLEELDEDALVQILTEPKNALVKQYQKL 324 (408)
T ss_pred HhccCCcccccccccchhhhhhHHHHHHhcChHHHHHcCCcHHHhcccceeeehhhcCHHHHHHHHhcccHHHHHHHHHH
Confidence 110 12445577777887 478889999999999986 45555532
Q ss_pred -----cCCccCHHHHHHHHHhhhc
Q 003088 477 -----HNCKFTLEAINAAVHLSAR 495 (849)
Q Consensus 477 -----~~~~i~~~~l~~~a~ls~~ 495 (849)
-.+.|+++++.++++.+-.
T Consensus 325 f~~d~V~L~F~~~AL~~IA~~A~~ 348 (408)
T COG1219 325 FEMDGVELEFTEEALKAIAKKAIE 348 (408)
T ss_pred hcccCceEEEcHHHHHHHHHHHHH
Confidence 2356899999998876643
No 281
>PRK04195 replication factor C large subunit; Provisional
Probab=99.25 E-value=2e-11 Score=141.49 Aligned_cols=163 Identities=25% Similarity=0.365 Sum_probs=110.8
Q ss_pred CCHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCcee
Q 003088 612 ITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSML 691 (849)
Q Consensus 612 ~~~~~~~~~~~l~~~l~~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i 691 (849)
+.|.+++++..+.+ ++|++.+++.+...+.....|. |..++||+||||||||++|+++++.+ +..++
T Consensus 2 ~~W~eKyrP~~l~d-----lvg~~~~~~~l~~~l~~~~~g~-----~~~~lLL~GppG~GKTtla~ala~el---~~~~i 68 (482)
T PRK04195 2 MPWVEKYRPKTLSD-----VVGNEKAKEQLREWIESWLKGK-----PKKALLLYGPPGVGKTSLAHALANDY---GWEVI 68 (482)
T ss_pred CCchhhcCCCCHHH-----hcCCHHHHHHHHHHHHHHhcCC-----CCCeEEEECCCCCCHHHHHHHHHHHc---CCCEE
Confidence 45777788777655 8999999999999987755432 23459999999999999999999987 45688
Q ss_pred EeeccccccccccccccCCCCCccccccCcchhHHHHhCCCeEEEEeCccccCH----HHHHHHHHHhhcCeeecCCCce
Q 003088 692 RLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRRRPFTLLLLDEIEKAHP----DIFNILLQVFEDGHLTDSHGRR 767 (849)
Q Consensus 692 ~i~~~~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~i~~~~~~vl~lDEid~l~~----~~~~~Ll~~le~g~~~~~~g~~ 767 (849)
.+++++......+..+++....+ ..+. ...+.||+|||+|.++. ..++.|+..++..
T Consensus 69 elnasd~r~~~~i~~~i~~~~~~------~sl~----~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~--------- 129 (482)
T PRK04195 69 ELNASDQRTADVIERVAGEAATS------GSLF----GARRKLILLDEVDGIHGNEDRGGARAILELIKKA--------- 129 (482)
T ss_pred EEcccccccHHHHHHHHHHhhcc------Cccc----CCCCeEEEEecCcccccccchhHHHHHHHHHHcC---------
Confidence 88887654333232222211000 0111 02467999999999976 6789999999752
Q ss_pred eecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCCh-HHhhccccEEEcCCCCHHHHccc
Q 003088 768 VSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRP-ELLNRIDEVVVFRSLEKAQVCQL 846 (849)
Q Consensus 768 ~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~p-ell~R~d~~i~f~pl~~~~~~~I 846 (849)
+..||+++|.... +.+ .|.+|+ ..|.|+|++.+++..+
T Consensus 130 ----~~~iIli~n~~~~------------------------------------~~~k~Lrsr~-~~I~f~~~~~~~i~~~ 168 (482)
T PRK04195 130 ----KQPIILTANDPYD------------------------------------PSLRELRNAC-LMIEFKRLSTRSIVPV 168 (482)
T ss_pred ----CCCEEEeccCccc------------------------------------cchhhHhccc-eEEEecCCCHHHHHHH
Confidence 2347777775321 222 455555 6778888887776655
Q ss_pred c
Q 003088 847 P 847 (849)
Q Consensus 847 ~ 847 (849)
+
T Consensus 169 L 169 (482)
T PRK04195 169 L 169 (482)
T ss_pred H
Confidence 4
No 282
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.25 E-value=4.2e-10 Score=123.97 Aligned_cols=182 Identities=17% Similarity=0.208 Sum_probs=120.4
Q ss_pred ccccHHHHHH--HHHHHhcC--CCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhccc--cccc
Q 003088 292 VIGRETEIQR--IIQILCRR--TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGA--KERG 365 (849)
Q Consensus 292 iiG~~~~i~~--l~~~l~~~--~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~~~--~~~g 365 (849)
++|..+.... ...+.+.. ..+.++|+|++|.|||+|+++++..+..... +.+++.+....+.... ..+.
T Consensus 90 v~g~~N~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~-----~a~v~y~~se~f~~~~v~a~~~ 164 (408)
T COG0593 90 VVGPSNRLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANGP-----NARVVYLTSEDFTNDFVKALRD 164 (408)
T ss_pred eeCCchHHHHHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHHHHHhhCC-----CceEEeccHHHHHHHHHHHHHh
Confidence 4555544433 22333332 3678899999999999999999999865422 4455655443322100 0000
Q ss_pred hHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCCCeEEEEccChHHHHHHhhccHHH
Q 003088 366 ELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKAL 445 (849)
Q Consensus 366 ~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~~i~vI~at~~~~~~~~~~~d~al 445 (849)
.--+.+++.+ .-.+|+|||++.+.+.. ....++.+++..+.+.++.+++.+...+. .+-.+.+.|
T Consensus 165 ~~~~~Fk~~y------~~dlllIDDiq~l~gk~-------~~qeefFh~FN~l~~~~kqIvltsdr~P~--~l~~~~~rL 229 (408)
T COG0593 165 NEMEKFKEKY------SLDLLLIDDIQFLAGKE-------RTQEEFFHTFNALLENGKQIVLTSDRPPK--ELNGLEDRL 229 (408)
T ss_pred hhHHHHHHhh------ccCeeeechHhHhcCCh-------hHHHHHHHHHHHHHhcCCEEEEEcCCCch--hhccccHHH
Confidence 1111111111 12399999999995432 23567888888888888855555555443 233466999
Q ss_pred Hhccc---cEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhccc
Q 003088 446 ARRFQ---PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497 (849)
Q Consensus 446 ~~Rf~---~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~ 497 (849)
++||. .+.+.+|+.+.+..||+..++ ..++.++++++..++....+-+
T Consensus 230 ~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~----~~~~~i~~ev~~~la~~~~~nv 280 (408)
T COG0593 230 RSRLEWGLVVEIEPPDDETRLAILRKKAE----DRGIEIPDEVLEFLAKRLDRNV 280 (408)
T ss_pred HHHHhceeEEeeCCCCHHHHHHHHHHHHH----hcCCCCCHHHHHHHHHHhhccH
Confidence 99996 599999999999999988666 7899999999999888666543
No 283
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.25 E-value=9.7e-11 Score=130.09 Aligned_cols=142 Identities=21% Similarity=0.404 Sum_probs=99.2
Q ss_pred ccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeecccccccccccccc
Q 003088 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLI 708 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~ 708 (849)
+.+++.+..++.+..++... .+++|+||||||||++|+.++..+.+. ..+..+++..+....+...++
T Consensus 175 ~d~~i~e~~le~l~~~L~~~-----------~~iil~GppGtGKT~lA~~la~~l~~~-~~~~~v~~VtFHpsySYeDFI 242 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK-----------KNIILQGPPGVGKTFVARRLAYLLTGE-KAPQRVNMVQFHQSYSYEDFI 242 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC-----------CCEEEECCCCCCHHHHHHHHHHHhcCC-cccceeeEEeecccccHHHHh
Confidence 45788888888887776632 249999999999999999999988543 345566666666666666666
Q ss_pred -CCCCCccccccC-cchhHHHHh---C--CCeEEEEeCccccCHH-HHHHHHHHhhcCe------ee----cCCCcee-e
Q 003088 709 -GSPPGYVGYEEG-GLLTEAIRR---R--PFTLLLLDEIEKAHPD-IFNILLQVFEDGH------LT----DSHGRRV-S 769 (849)
Q Consensus 709 -g~~~g~vg~~~~-~~l~~~i~~---~--~~~vl~lDEid~l~~~-~~~~Ll~~le~g~------~~----~~~g~~~-~ 769 (849)
|..++++|+... +.+.+++.. . .+.|||||||++.+++ ++..|+++||.+. +. ...+..+ .
T Consensus 243 ~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~i 322 (459)
T PRK11331 243 QGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYV 322 (459)
T ss_pred cccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhccccccccccceeeeccccccccccC
Confidence 666677777543 445444332 2 3579999999999965 7899999998642 11 1112222 2
Q ss_pred cCCeEEEEecCCC
Q 003088 770 FKNALIVMTSNVG 782 (849)
Q Consensus 770 ~~~~~iI~tsn~~ 782 (849)
..|++||+|+|..
T Consensus 323 P~Nl~IIgTMNt~ 335 (459)
T PRK11331 323 PENVYIIGLMNTA 335 (459)
T ss_pred CCCeEEEEecCcc
Confidence 3599999999974
No 284
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.24 E-value=1.8e-11 Score=151.58 Aligned_cols=142 Identities=15% Similarity=0.271 Sum_probs=96.0
Q ss_pred CccceeecCCCCchHHHHHHHHHHhcCCCCceeEeecccccccccc----ccc-cCC-----------------------
Q 003088 659 TAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTV----SKL-IGS----------------------- 710 (849)
Q Consensus 659 ~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~----~~l-~g~----------------------- 710 (849)
...+|++||||||||++|++||... +.||+.+.++++.+.... +.+ +|.
T Consensus 1630 PKGILLiGPPGTGKTlLAKALA~es---~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~n 1706 (2281)
T CHL00206 1630 SRGILVIGSIGTGRSYLVKYLATNS---YVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMMN 1706 (2281)
T ss_pred CCceEEECCCCCCHHHHHHHHHHhc---CCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhhcc
Confidence 3359999999999999999999984 789999999988753200 000 010
Q ss_pred -CCCccccccC----cchhHHHHhCCCeEEEEeCccccCHH-----HHHHHHHHhhcCeeecCCCceeecCCeEEEEecC
Q 003088 711 -PPGYVGYEEG----GLLTEAIRRRPFTLLLLDEIEKAHPD-----IFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSN 780 (849)
Q Consensus 711 -~~g~vg~~~~----~~l~~~i~~~~~~vl~lDEid~l~~~-----~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn 780 (849)
..++.+.+++ ..+.+..++..+|||||||||.+... ..+.|+..|+.... .....+++||+|||
T Consensus 1707 ~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~------~~s~~~VIVIAATN 1780 (2281)
T CHL00206 1707 ALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCE------RCSTRNILVIASTH 1780 (2281)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCccceehHHHHHHHhccccc------cCCCCCEEEEEeCC
Confidence 0111222222 12444556666799999999999754 36888888875210 01234789999999
Q ss_pred CCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhh--ccccEEEcCCCCHHHHcc
Q 003088 781 VGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLN--RIDEVVVFRSLEKAQVCQ 845 (849)
Q Consensus 781 ~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~--R~d~~i~f~pl~~~~~~~ 845 (849)
.+.. ++|+|+. |||..|.++.++..+.++
T Consensus 1781 RPD~------------------------------------LDPALLRPGRFDR~I~Ir~Pd~p~R~k 1811 (2281)
T CHL00206 1781 IPQK------------------------------------VDPALIAPNKLNTCIKIRRLLIPQQRK 1811 (2281)
T ss_pred Cccc------------------------------------CCHhHcCCCCCCeEEEeCCCCchhHHH
Confidence 7421 7899994 999999988776544333
No 285
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.24 E-value=1.5e-11 Score=138.75 Aligned_cols=160 Identities=18% Similarity=0.294 Sum_probs=98.4
Q ss_pred ccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCC------------CceeEe-ec
Q 003088 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSE------------SSMLRL-DM 695 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~------------~~~i~i-~~ 695 (849)
++|+||+.+++.|...+...+. ..++||+||+|||||++|+++|+.+.+.. .++-.+ .|
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~~--------~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c 87 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGRV--------GHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESC 87 (397)
T ss_pred hhccChHHHHHHHHHHHHhCCc--------ceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHH
Confidence 6699999999999888875321 12399999999999999999999985521 111100 01
Q ss_pred ccccccccc--ccccCCCCCccccccCcchhHHHHh----CCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceee
Q 003088 696 SEYMERHTV--SKLIGSPPGYVGYEEGGLLTEAIRR----RPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVS 769 (849)
Q Consensus 696 ~~~~~~~~~--~~l~g~~~g~vg~~~~~~l~~~i~~----~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~ 769 (849)
..+...... ..+-|. +..|.++...+.+.+.. +++.|+||||+|.++...++.|++.|++ .
T Consensus 88 ~~~~~~~~~n~~~~~~~--~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEe-----------p 154 (397)
T PRK14955 88 RDFDAGTSLNISEFDAA--SNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEE-----------P 154 (397)
T ss_pred HHHhcCCCCCeEeeccc--ccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhc-----------C
Confidence 111100000 001110 11111211122233322 3457999999999999999999999997 2
Q ss_pred cCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHHHccc
Q 003088 770 FKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQL 846 (849)
Q Consensus 770 ~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~I 846 (849)
...++||++++.... +.+.+.+|+ .++.|.|++.+++.+.
T Consensus 155 ~~~t~~Il~t~~~~k------------------------------------l~~tl~sR~-~~v~f~~l~~~ei~~~ 194 (397)
T PRK14955 155 PPHAIFIFATTELHK------------------------------------IPATIASRC-QRFNFKRIPLEEIQQQ 194 (397)
T ss_pred CCCeEEEEEeCChHH------------------------------------hHHHHHHHH-HHhhcCCCCHHHHHHH
Confidence 346777777653110 446677777 5777888887776543
No 286
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.23 E-value=2.4e-11 Score=143.08 Aligned_cols=160 Identities=21% Similarity=0.342 Sum_probs=101.3
Q ss_pred ccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCC------ceeEee-ccccccc
Q 003088 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSES------SMLRLD-MSEYMER 701 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~------~~i~i~-~~~~~~~ 701 (849)
+.++||+.++..|..++...+. ..++||+||+|+|||++|+++|+.+++... ++-.++ |..+...
T Consensus 16 ~~liGq~~i~~~L~~~l~~~rl--------~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g 87 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNRI--------APAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAG 87 (620)
T ss_pred hhccChHHHHHHHHHHHHcCCC--------CceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcC
Confidence 5699999999999888875431 124999999999999999999999865321 111111 0011000
Q ss_pred cccccccC-CCCCccccccCcchhHHHHh----CCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEE
Q 003088 702 HTVSKLIG-SPPGYVGYEEGGLLTEAIRR----RPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIV 776 (849)
Q Consensus 702 ~~~~~l~g-~~~g~vg~~~~~~l~~~i~~----~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI 776 (849)
... .++. .+....+.+....+.+.+.. ..+.|+||||+|.|+...+|.||+.||+ ...+++||
T Consensus 88 ~h~-D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEe-----------Pp~~tvfI 155 (620)
T PRK14948 88 NAL-DVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEE-----------PPPRVVFV 155 (620)
T ss_pred CCc-cEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhc-----------CCcCeEEE
Confidence 000 0100 00011222211122222222 3457999999999999999999999997 33578888
Q ss_pred EecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHHHcc
Q 003088 777 MTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQ 845 (849)
Q Consensus 777 ~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~ 845 (849)
++++.... +.+.+.+|| ..+.|.+++.+++..
T Consensus 156 L~t~~~~~------------------------------------llpTIrSRc-~~~~f~~l~~~ei~~ 187 (620)
T PRK14948 156 LATTDPQR------------------------------------VLPTIISRC-QRFDFRRIPLEAMVQ 187 (620)
T ss_pred EEeCChhh------------------------------------hhHHHHhhe-eEEEecCCCHHHHHH
Confidence 87764211 557788888 778888888777654
No 287
>PRK04132 replication factor C small subunit; Provisional
Probab=99.23 E-value=9.4e-11 Score=140.29 Aligned_cols=160 Identities=17% Similarity=0.226 Sum_probs=125.9
Q ss_pred eEeC--CCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhccccccchHHHHHHHHHHHHHhc------CCeEE
Q 003088 315 ILLG--ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKS------GDVIL 386 (849)
Q Consensus 315 LL~G--ppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~~~~~~g~~e~~l~~l~~~~~~~------~~~IL 386 (849)
+..| |++.||||+|++||+.+...+ .+..++++|.++.. ... .++.+++.+... +..|+
T Consensus 568 ~~~G~lPh~lGKTT~A~ala~~l~g~~-----~~~~~lElNASd~r----gid----~IR~iIk~~a~~~~~~~~~~KVv 634 (846)
T PRK04132 568 FIGGNLPTVLHNTTAALALARELFGEN-----WRHNFLELNASDER----GIN----VIREKVKEFARTKPIGGASFKII 634 (846)
T ss_pred hhcCCCCCcccHHHHHHHHHHhhhccc-----ccCeEEEEeCCCcc----cHH----HHHHHHHHHHhcCCcCCCCCEEE
Confidence 6678 999999999999999984321 13467787765421 112 344554443321 23699
Q ss_pred EEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcC--CCeEEEEccChHHHHHHhhccHHHHhccccEEecCCCHHHHHH
Q 003088 387 FIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVR 464 (849)
Q Consensus 387 fIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~--~~i~vI~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~~e~~~ 464 (849)
||||+|.| +.++++.|++.+|. +.+++|++||... .+.+++++||+.+.|++|+.++...
T Consensus 635 IIDEaD~L-------------t~~AQnALLk~lEep~~~~~FILi~N~~~-----kIi~tIrSRC~~i~F~~ls~~~i~~ 696 (846)
T PRK04132 635 FLDEADAL-------------TQDAQQALRRTMEMFSSNVRFILSCNYSS-----KIIEPIQSRCAIFRFRPLRDEDIAK 696 (846)
T ss_pred EEECcccC-------------CHHHHHHHHHHhhCCCCCeEEEEEeCChh-----hCchHHhhhceEEeCCCCCHHHHHH
Confidence 99999999 45789999999995 7899999999876 7889999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCccCHHHHHHHHHhhhcccccCcchhhHHHHHHHHhh
Q 003088 465 ILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGS 515 (849)
Q Consensus 465 iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~~~r~~p~~ai~ll~~a~~ 515 (849)
.|..+++ .+++.++++++..++..+++-+ .+|+.+++.++.
T Consensus 697 ~L~~I~~----~Egi~i~~e~L~~Ia~~s~GDl------R~AIn~Lq~~~~ 737 (846)
T PRK04132 697 RLRYIAE----NEGLELTEEGLQAILYIAEGDM------RRAINILQAAAA 737 (846)
T ss_pred HHHHHHH----hcCCCCCHHHHHHHHHHcCCCH------HHHHHHHHHHHH
Confidence 9988887 5678899999999999999865 478888877654
No 288
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.23 E-value=2.5e-11 Score=142.00 Aligned_cols=160 Identities=16% Similarity=0.276 Sum_probs=101.5
Q ss_pred ccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCC------------CceeEe-ec
Q 003088 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSE------------SSMLRL-DM 695 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~------------~~~i~i-~~ 695 (849)
++|+||+.+++.|.+++...+. ..++||+||+|||||++|+.+|+.+.... .++-.+ .|
T Consensus 16 ~eivGQe~i~~~L~~~i~~~ri--------~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC 87 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDRV--------GHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESC 87 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC--------CeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHH
Confidence 5699999999999888865322 12399999999999999999999985521 111100 01
Q ss_pred ccccccccc--ccccCCCCCccccccCcchhHHHHh----CCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceee
Q 003088 696 SEYMERHTV--SKLIGSPPGYVGYEEGGLLTEAIRR----RPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVS 769 (849)
Q Consensus 696 ~~~~~~~~~--~~l~g~~~g~vg~~~~~~l~~~i~~----~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~ 769 (849)
..+...... ..+-| ....|.++...+.+.+.. +.+.|++|||+|.++...+|.|++.||+ .
T Consensus 88 ~~~~~g~~~n~~~~d~--~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEe-----------P 154 (620)
T PRK14954 88 RDFDAGTSLNISEFDA--ASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEE-----------P 154 (620)
T ss_pred HHHhccCCCCeEEecc--cccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhC-----------C
Confidence 111110000 01111 011122222222233322 3467999999999999999999999998 3
Q ss_pred cCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHHHccc
Q 003088 770 FKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQL 846 (849)
Q Consensus 770 ~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~I 846 (849)
...++||++++... .+.+.+.+|+ .++.|.+++.+++...
T Consensus 155 p~~tv~IL~t~~~~------------------------------------kLl~TI~SRc-~~vef~~l~~~ei~~~ 194 (620)
T PRK14954 155 PPHAIFIFATTELH------------------------------------KIPATIASRC-QRFNFKRIPLDEIQSQ 194 (620)
T ss_pred CCCeEEEEEeCChh------------------------------------hhhHHHHhhc-eEEecCCCCHHHHHHH
Confidence 34677887765311 0556788888 7889999988877643
No 289
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=1.1e-10 Score=121.69 Aligned_cols=111 Identities=25% Similarity=0.299 Sum_probs=80.8
Q ss_pred CeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcC------------CCeEEEEccChHHHHHHhhccHHHHhccc
Q 003088 383 DVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR------------GELQCIASTTQDEHRTQFEKDKALARRFQ 450 (849)
Q Consensus 383 ~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~------------~~i~vI~at~~~~~~~~~~~d~al~~Rf~ 450 (849)
.+|+||||||.++..+..+.+ .-+..-+|.-|+|+++. ..+.||+++-..- .+-..+-|.|.-||.
T Consensus 251 ~GIvFIDEIDKIa~~~~~g~~-dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~-sKPSDLiPELQGRfP 328 (444)
T COG1220 251 NGIVFIDEIDKIAKRGGSGGP-DVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHV-AKPSDLIPELQGRFP 328 (444)
T ss_pred cCeEEEehhhHHHhcCCCCCC-CcchhhhcccccccccCceeeccccccccceEEEEecCceec-CChhhcChhhcCCCc
Confidence 469999999999877653221 12334577888888873 3478999886532 122367799999998
Q ss_pred -cEEecCCCHHHHHHHHHH----HHHHHHhh-----cCCccCHHHHHHHHHhhhc
Q 003088 451 -PVLISEPSQEDAVRILLG----LREKYEAH-----HNCKFTLEAINAAVHLSAR 495 (849)
Q Consensus 451 -~i~~~~ps~~e~~~iL~~----~~~~~~~~-----~~~~i~~~~l~~~a~ls~~ 495 (849)
+|++..++.++-..||.. +.++|..- -.+.|+++++..+|.++-.
T Consensus 329 IRVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~~ 383 (444)
T COG1220 329 IRVELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIAYQ 383 (444)
T ss_pred eEEEcccCCHHHHHHHHcCcchHHHHHHHHHHhhcCeeEEecHHHHHHHHHHHHH
Confidence 799999999999999985 55566422 2457899999988887754
No 290
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.23 E-value=1e-10 Score=129.00 Aligned_cols=155 Identities=21% Similarity=0.262 Sum_probs=111.4
Q ss_pred CCccccHHHHHHHHHHHh-cCCCCC-CeEeCCCCChHHHHHHHHHHHhhhCCCCccc--------------cCCeEEEee
Q 003088 290 DPVIGRETEIQRIIQILC-RRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEVPVFL--------------LSKRIMSLD 353 (849)
Q Consensus 290 ~~iiG~~~~i~~l~~~l~-~~~~~n-iLL~GppGtGKT~la~~la~~l~~~~~p~~~--------------~~~~~~~l~ 353 (849)
++++|.+..+..+..... ..+.+| +||+||||+|||++|.++|+.+......... ....+++++
T Consensus 1 ~~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~ 80 (325)
T COG0470 1 DELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELN 80 (325)
T ss_pred CCcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEec
Confidence 357888888888888776 455778 9999999999999999999999754322111 123455554
Q ss_pred hhhhhccccccchHHHHHHHHHHHHHh----cCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcC--CCeEEE
Q 003088 354 MGLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--GELQCI 427 (849)
Q Consensus 354 ~~~~~~~~~~~g~~e~~l~~l~~~~~~----~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~--~~i~vI 427 (849)
.+.... ..-..+.++.+.+.... ++..|++|||+|.| +.+++|.|+..+|. .+.++|
T Consensus 81 ~s~~~~----~~i~~~~vr~~~~~~~~~~~~~~~kviiidead~m-------------t~~A~nallk~lEep~~~~~~i 143 (325)
T COG0470 81 PSDLRK----IDIIVEQVRELAEFLSESPLEGGYKVVIIDEADKL-------------TEDAANALLKTLEEPPKNTRFI 143 (325)
T ss_pred ccccCC----CcchHHHHHHHHHHhccCCCCCCceEEEeCcHHHH-------------hHHHHHHHHHHhccCCCCeEEE
Confidence 433211 11245556666555443 34579999999999 56889999999984 568888
Q ss_pred EccChHHHHHHhhccHHHHhccccEEecCCCHHHHHHHH
Q 003088 428 ASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRIL 466 (849)
Q Consensus 428 ~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL 466 (849)
.+||... .+-+.+++||+.+.|.+|+....+..+
T Consensus 144 l~~n~~~-----~il~tI~SRc~~i~f~~~~~~~~i~~~ 177 (325)
T COG0470 144 LITNDPS-----KILPTIRSRCQRIRFKPPSRLEAIAWL 177 (325)
T ss_pred EEcCChh-----hccchhhhcceeeecCCchHHHHHHHh
Confidence 8888665 677899999999999997665555444
No 291
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.23 E-value=6e-11 Score=130.42 Aligned_cols=154 Identities=16% Similarity=0.165 Sum_probs=111.0
Q ss_pred CCCccc-cHHHHHHHHHHHhcCCCCCC-eEeCCCCChHHHHHHHHHHHhhhCCCCcc--cc------------CCeEEEe
Q 003088 289 IDPVIG-RETEIQRIIQILCRRTKNNP-ILLGESGVGKTAIAEGLAIRIVQAEVPVF--LL------------SKRIMSL 352 (849)
Q Consensus 289 l~~iiG-~~~~i~~l~~~l~~~~~~ni-LL~GppGtGKT~la~~la~~l~~~~~p~~--~~------------~~~~~~l 352 (849)
++.++| ++..++.+...+...+.+|. ||+||+|+|||++|+.+|+.+.+.+.... .. ...+..+
T Consensus 4 ~~~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i 83 (329)
T PRK08058 4 WEQLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLV 83 (329)
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEe
Confidence 457788 88889999999988888887 99999999999999999999875431110 00 0011111
Q ss_pred ehhhhhccccccchHHHHHHHHHHHHH----hcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcC--CCeEE
Q 003088 353 DMGLLMAGAKERGELEARVTTLISEIQ----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--GELQC 426 (849)
Q Consensus 353 ~~~~~~~~~~~~g~~e~~l~~l~~~~~----~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~--~~i~v 426 (849)
... +.. -..+.++.+.+.+. .++..|++|||+|.+ +.+++|.|++.||+ +...+
T Consensus 84 ~~~----~~~---i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~-------------~~~a~NaLLK~LEEPp~~~~~ 143 (329)
T PRK08058 84 APD----GQS---IKKDQIRYLKEEFSKSGVESNKKVYIIEHADKM-------------TASAANSLLKFLEEPSGGTTA 143 (329)
T ss_pred ccc----ccc---CCHHHHHHHHHHHhhCCcccCceEEEeehHhhh-------------CHHHHHHHHHHhcCCCCCceE
Confidence 110 110 11234555555544 244579999999999 56789999999996 56777
Q ss_pred EEccChHHHHHHhhccHHHHhccccEEecCCCHHHHHHHHH
Q 003088 427 IASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILL 467 (849)
Q Consensus 427 I~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL~ 467 (849)
|.+|+... .+-+++++||+.++|.+|+.++..++|.
T Consensus 144 Il~t~~~~-----~ll~TIrSRc~~i~~~~~~~~~~~~~L~ 179 (329)
T PRK08058 144 ILLTENKH-----QILPTILSRCQVVEFRPLPPESLIQRLQ 179 (329)
T ss_pred EEEeCChH-----hCcHHHHhhceeeeCCCCCHHHHHHHHH
Confidence 87777655 7889999999999999999999877764
No 292
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.23 E-value=3e-11 Score=135.00 Aligned_cols=160 Identities=21% Similarity=0.354 Sum_probs=98.3
Q ss_pred ccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeecccccccccccccc
Q 003088 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLI 708 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~ 708 (849)
+.++||+.+++.+...+...+ ....+||+||||+|||++|+.+++.+.+....- ...|......... ..
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~--------~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~-~~~c~~c~~c~~~--~~ 82 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGR--------IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPD-GEPCNECESCKEI--NS 82 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCC--------CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-CCCCCCCHHHHHH--hc
Confidence 558999999999988886532 113489999999999999999999985432100 0011110000000 00
Q ss_pred CCCCC--------ccccccCcchhHHHHh----CCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEE
Q 003088 709 GSPPG--------YVGYEEGGLLTEAIRR----RPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIV 776 (849)
Q Consensus 709 g~~~g--------~vg~~~~~~l~~~i~~----~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI 776 (849)
|..+. ..+......+.+.+.. .++.||+|||+|.++...++.|++.+++ ...+++||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~-----------~~~~~~lI 151 (355)
T TIGR02397 83 GSSLDVIEIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEE-----------PPEHVVFI 151 (355)
T ss_pred CCCCCEEEeeccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhC-----------CccceeEE
Confidence 10000 1111111112222222 2356999999999999999999999987 23467788
Q ss_pred EecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHHHcccc
Q 003088 777 MTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQLP 847 (849)
Q Consensus 777 ~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~I~ 847 (849)
++++.... +.+.+.+|+ ..+.|.|++.+++.+++
T Consensus 152 l~~~~~~~------------------------------------l~~~l~sr~-~~~~~~~~~~~~l~~~l 185 (355)
T TIGR02397 152 LATTEPHK------------------------------------IPATILSRC-QRFDFKRIPLEDIVERL 185 (355)
T ss_pred EEeCCHHH------------------------------------HHHHHHhhe-eEEEcCCCCHHHHHHHH
Confidence 87764210 346677787 67788888888776654
No 293
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.22 E-value=4.2e-11 Score=142.74 Aligned_cols=155 Identities=23% Similarity=0.343 Sum_probs=102.2
Q ss_pred CHHHHHHHHHHHHHHhccccccHHHHH---HHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCc
Q 003088 613 TADERMLLVGLEEQLKKRVIGQDEAVA---AISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESS 689 (849)
Q Consensus 613 ~~~~~~~~~~l~~~l~~~i~Gq~~~i~---~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~ 689 (849)
++.++.++..+ ++++||+..+. .+...+... ...+++|+||||||||++|+++++.+ +.+
T Consensus 17 PLaek~RP~tl-----dd~vGQe~ii~~~~~L~~~i~~~---------~~~slLL~GPpGtGKTTLA~aIA~~~---~~~ 79 (725)
T PRK13341 17 PLADRLRPRTL-----EEFVGQDHILGEGRLLRRAIKAD---------RVGSLILYGPPGVGKTTLARIIANHT---RAH 79 (725)
T ss_pred ChHHhcCCCcH-----HHhcCcHHHhhhhHHHHHHHhcC---------CCceEEEECCCCCCHHHHHHHHHHHh---cCc
Confidence 45555555444 45889999885 344444321 12369999999999999999999885 456
Q ss_pred eeEeeccccccccccccccCCCCCccccccCcchhHH---HHh-CCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCC
Q 003088 690 MLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEA---IRR-RPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHG 765 (849)
Q Consensus 690 ~i~i~~~~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~---i~~-~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g 765 (849)
|+.+++.....+. . ...+..+ +.. ..+.+|||||||.++...|+.|+..++++.
T Consensus 80 f~~lna~~~~i~d-i---------------r~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~g~------ 137 (725)
T PRK13341 80 FSSLNAVLAGVKD-L---------------RAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVENGT------ 137 (725)
T ss_pred ceeehhhhhhhHH-H---------------HHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhcCce------
Confidence 7777664211000 0 0011111 111 235699999999999999999999998743
Q ss_pred ceeecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHHHcc
Q 003088 766 RRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQ 845 (849)
Q Consensus 766 ~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~ 845 (849)
+++|++++..+.. .+.+.+++|+ .++.|+|++.+++..
T Consensus 138 -------IiLI~aTTenp~~----------------------------------~l~~aL~SR~-~v~~l~pLs~edi~~ 175 (725)
T PRK13341 138 -------ITLIGATTENPYF----------------------------------EVNKALVSRS-RLFRLKSLSDEDLHQ 175 (725)
T ss_pred -------EEEEEecCCChHh----------------------------------hhhhHhhccc-cceecCCCCHHHHHH
Confidence 4566655432110 1567888887 678999999999887
Q ss_pred ccC
Q 003088 846 LPL 848 (849)
Q Consensus 846 I~~ 848 (849)
|++
T Consensus 176 IL~ 178 (725)
T PRK13341 176 LLK 178 (725)
T ss_pred HHH
Confidence 763
No 294
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=99.22 E-value=1.3e-10 Score=138.03 Aligned_cols=171 Identities=16% Similarity=0.158 Sum_probs=109.8
Q ss_pred ccCHhHHHHHHHhHhCCCcccCCHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHhhc-----C-CC------CCCCC
Q 003088 591 VVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRV-----G-LK------DPNRP 658 (849)
Q Consensus 591 ~v~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~i~Gq~~~i~~l~~~l~~~~~-----g-~~------~~~~p 658 (849)
.++.+++..+.+- .. .......+...+.-.|.|++.+++.|.-++..+.. + .+ ..-+.
T Consensus 422 ~~t~ed~~~I~~l-s~---------~p~i~~~L~~SiaP~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRg 491 (915)
T PTZ00111 422 DFSDLQVYKILEL-SR---------NPMIYRILLDSFAPSIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRG 491 (915)
T ss_pred cCCHHHHHHHHHH-hc---------CHHHHHHHHHHhCCeEECCHHHHHHHHHHHhcCCccccccccccccccccccccC
Confidence 4666766665432 11 12233455667778899999999888766643210 0 00 11233
Q ss_pred CccceeecCCCCchHHHHHHHHHHhcCC----CCceeEeeccccccccccccccCCCCCccccccCcchhHHHHhCCCeE
Q 003088 659 TAAMLFCGPTGVGKTELAKSLAACYFGS----ESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRRRPFTL 734 (849)
Q Consensus 659 ~~~lL~~Gp~GtGKt~lA~~la~~l~~~----~~~~i~i~~~~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~i~~~~~~v 734 (849)
..||||+|+|||||+.+|+.+|+...+. +.++..+++..... ..+.. .|. -..-.+++..+.+|+
T Consensus 492 dihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~------~~d~~---tG~--~~le~GaLvlAdgGt 560 (915)
T PTZ00111 492 IINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIK------FNESD---NGR--AMIQPGAVVLANGGV 560 (915)
T ss_pred CceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhh------hcccc---cCc--ccccCCcEEEcCCCe
Confidence 4589999999999999999999975332 24555555544311 00000 010 001123455667899
Q ss_pred EEEeCccccCHHHHHHHHHHhhcCeeecCC-Cceeec-CCeEEEEecCCC
Q 003088 735 LLLDEIEKAHPDIFNILLQVFEDGHLTDSH-GRRVSF-KNALIVMTSNVG 782 (849)
Q Consensus 735 l~lDEid~l~~~~~~~Ll~~le~g~~~~~~-g~~~~~-~~~~iI~tsn~~ 782 (849)
++|||++++++..|..|+++|+.+.++... |-.... .+++||+++|+-
T Consensus 561 L~IDEidkms~~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~ 610 (915)
T PTZ00111 561 CCIDELDKCHNESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPI 610 (915)
T ss_pred EEecchhhCCHHHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCc
Confidence 999999999999999999999999886542 433333 499999999984
No 295
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.22 E-value=5.3e-11 Score=130.39 Aligned_cols=154 Identities=18% Similarity=0.305 Sum_probs=102.7
Q ss_pred ccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeecccccccccccccc
Q 003088 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLI 708 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~ 708 (849)
++++||+.+++.+...+...+. ...+||+||+|+|||++|+.+++.+.+....-.+.|...+ .
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~--------~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~---------~ 66 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRF--------SHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEF---------K 66 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCC--------CceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEe---------c
Confidence 5789999999999888865321 1238999999999999999999988543211000011000 0
Q ss_pred CCCCCccccccCcchhHHHHh----CCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCch
Q 003088 709 GSPPGYVGYEEGGLLTEAIRR----RPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGST 784 (849)
Q Consensus 709 g~~~g~vg~~~~~~l~~~i~~----~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~ 784 (849)
......++.++...+.+.+.. ..+.|++||++|.++...+|.||+.||+ +..+++||++|+...
T Consensus 67 ~~~~~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEe-----------pp~~t~~il~~~~~~- 134 (313)
T PRK05564 67 PINKKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEE-----------PPKGVFIILLCENLE- 134 (313)
T ss_pred cccCCCCCHHHHHHHHHHHhcCcccCCceEEEEechhhcCHHHHHHHHHHhcC-----------CCCCeEEEEEeCChH-
Confidence 000011222221122222222 3357999999999999999999999998 345778888775321
Q ss_pred hhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHHHcccc
Q 003088 785 TIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQLP 847 (849)
Q Consensus 785 ~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~I~ 847 (849)
.+.|++.+|+ .++.|.|++.+++...+
T Consensus 135 -----------------------------------~ll~TI~SRc-~~~~~~~~~~~~~~~~l 161 (313)
T PRK05564 135 -----------------------------------QILDTIKSRC-QIYKLNRLSKEEIEKFI 161 (313)
T ss_pred -----------------------------------hCcHHHHhhc-eeeeCCCcCHHHHHHHH
Confidence 1678999999 79999999988876543
No 296
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.22 E-value=1.8e-10 Score=140.64 Aligned_cols=184 Identities=16% Similarity=0.206 Sum_probs=127.4
Q ss_pred CCccccHHHHHHHHHHHhcC-------CC--CCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhcc
Q 003088 290 DPVIGRETEIQRIIQILCRR-------TK--NNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAG 360 (849)
Q Consensus 290 ~~iiG~~~~i~~l~~~l~~~-------~~--~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~~ 360 (849)
..++||++.+..+.+.+.+. .+ ..+||+||||||||.+|++||+.+..+ ...++.+|++.+...
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~-------~~~~~~~dmse~~~~ 638 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGG-------EQNLITINMSEFQEA 638 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCC-------CcceEEEeHHHhhhh
Confidence 36899999999998877431 11 247999999999999999999998643 345677777664311
Q ss_pred ----------ccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCCC-------
Q 003088 361 ----------AKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGE------- 423 (849)
Q Consensus 361 ----------~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~~------- 423 (849)
..|.|.-+ -..+.+.++..+.+||+|||++.. ..++++.|.++++.|.
T Consensus 639 ~~~~~l~g~~~gyvg~~~--~g~L~~~v~~~p~svvllDEieka-------------~~~v~~~Llq~ld~g~l~d~~Gr 703 (852)
T TIGR03345 639 HTVSRLKGSPPGYVGYGE--GGVLTEAVRRKPYSVVLLDEVEKA-------------HPDVLELFYQVFDKGVMEDGEGR 703 (852)
T ss_pred hhhccccCCCCCcccccc--cchHHHHHHhCCCcEEEEechhhc-------------CHHHHHHHHHHhhcceeecCCCc
Confidence 11222111 012334455567789999999977 5678889998887543
Q ss_pred ------eEEEEccChHH--HHH----------------H------hhccHHHHhccccEEecCCCHHHHHHHHHHHHHHH
Q 003088 424 ------LQCIASTTQDE--HRT----------------Q------FEKDKALARRFQPVLISEPSQEDAVRILLGLREKY 473 (849)
Q Consensus 424 ------i~vI~at~~~~--~~~----------------~------~~~d~al~~Rf~~i~~~~ps~~e~~~iL~~~~~~~ 473 (849)
.++|+|||... |.. . ....|+|.+|++.|.|.+++.++..+|+.....+.
T Consensus 704 ~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~iI~F~pLs~e~l~~Iv~~~L~~l 783 (852)
T TIGR03345 704 EIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMTVIPYLPLDDDVLAAIVRLKLDRI 783 (852)
T ss_pred EEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhcceeEEEeCCCCHHHHHHHHHHHHHHH
Confidence 56788877310 000 0 11458888999999999999999999998865543
Q ss_pred ----Hhh--cCCccCHHHHHHHHHhhhc
Q 003088 474 ----EAH--HNCKFTLEAINAAVHLSAR 495 (849)
Q Consensus 474 ----~~~--~~~~i~~~~l~~~a~ls~~ 495 (849)
... ..+.+++++++.++..+..
T Consensus 784 ~~rl~~~~gi~l~i~d~a~~~La~~g~~ 811 (852)
T TIGR03345 784 ARRLKENHGAELVYSEALVEHIVARCTE 811 (852)
T ss_pred HHHHHHhcCceEEECHHHHHHHHHHcCC
Confidence 222 2367899999988887643
No 297
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.21 E-value=1.2e-10 Score=132.19 Aligned_cols=184 Identities=18% Similarity=0.199 Sum_probs=129.7
Q ss_pred hhhhHHHHhhcCCCCccccHHHHHHHHHHHhc----------------------------------CCCCCCeEeCCCCC
Q 003088 277 CVDLTARASEELIDPVIGRETEIQRIIQILCR----------------------------------RTKNNPILLGESGV 322 (849)
Q Consensus 277 ~~~l~~~~~~~~l~~iiG~~~~i~~l~~~l~~----------------------------------~~~~niLL~GppGt 322 (849)
+.=|+++|+|..|-++.|.+..-+.++-||.. +.+.-+||+||||.
T Consensus 258 ~kLWVdky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGl 337 (877)
T KOG1969|consen 258 DKLWVDKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGL 337 (877)
T ss_pred cceeecccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCC
Confidence 33688899999999999988877777776621 12234599999999
Q ss_pred hHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhccccccchHHHHHHHHHHHHH----hcCCeEEEEcCcchhhhCC
Q 003088 323 GKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ----KSGDVILFIDEVHTLIGSG 398 (849)
Q Consensus 323 GKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~~~~~~g~~e~~l~~l~~~~~----~~~~~ILfIDEi~~l~~~~ 398 (849)
||||+|+-+|+.. |..+++++.++-..+ ..+++++..++..=. ..+|.+|+|||||--
T Consensus 338 GKTTLAHViAkqa----------GYsVvEINASDeRt~----~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa---- 399 (877)
T KOG1969|consen 338 GKTTLAHVIAKQA----------GYSVVEINASDERTA----PMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGA---- 399 (877)
T ss_pred ChhHHHHHHHHhc----------CceEEEecccccccH----HHHHHHHHHHHhhccccccCCCcceEEEecccCC----
Confidence 9999999999988 889999987664322 234455544443211 256899999999843
Q ss_pred CCCCCCCCccHHHHHHHhhhhcC--------------------CC---eEEEEccChHHHHHHhhccHHHHh--cc-ccE
Q 003088 399 TVGRGNKGTGLDISNLLKPSLGR--------------------GE---LQCIASTTQDEHRTQFEKDKALAR--RF-QPV 452 (849)
Q Consensus 399 ~~~~~~~~~~~~~~~~L~~~le~--------------------~~---i~vI~at~~~~~~~~~~~d~al~~--Rf-~~i 452 (849)
...+.+.|+..+.. +. -.|||.||.- | -|+|+- -| ..|
T Consensus 400 ---------~~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdL-Y------aPaLR~Lr~~A~ii 463 (877)
T KOG1969|consen 400 ---------PRAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDL-Y------APALRPLRPFAEII 463 (877)
T ss_pred ---------cHHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCc-c------chhhhhcccceEEE
Confidence 23445555444430 00 1355555642 2 355544 33 479
Q ss_pred EecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhcccc
Q 003088 453 LISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498 (849)
Q Consensus 453 ~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~~ 498 (849)
.|.+|+..-.++-|+.++. .+++.++..++..++.+++..+.
T Consensus 464 ~f~~p~~s~Lv~RL~~IC~----rE~mr~d~~aL~~L~el~~~DIR 505 (877)
T KOG1969|consen 464 AFVPPSQSRLVERLNEICH----RENMRADSKALNALCELTQNDIR 505 (877)
T ss_pred EecCCChhHHHHHHHHHHh----hhcCCCCHHHHHHHHHHhcchHH
Confidence 9999999999988888887 77899999999999999988664
No 298
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.21 E-value=4.4e-11 Score=131.48 Aligned_cols=156 Identities=21% Similarity=0.248 Sum_probs=107.7
Q ss_pred cCCHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCce
Q 003088 611 QITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSM 690 (849)
Q Consensus 611 ~~~~~~~~~~~~l~~~l~~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~ 690 (849)
.+.|.++++++.+.+ ++||+++.+.+...+.... .| ..+||+||||+|||++|+++++.+ +.++
T Consensus 8 ~~~w~~kyrP~~~~~-----~~~~~~~~~~l~~~~~~~~-------~~-~~lll~G~~G~GKT~la~~l~~~~---~~~~ 71 (316)
T PHA02544 8 EFMWEQKYRPSTIDE-----CILPAADKETFKSIVKKGR-------IP-NMLLHSPSPGTGKTTVAKALCNEV---GAEV 71 (316)
T ss_pred CCcceeccCCCcHHH-----hcCcHHHHHHHHHHHhcCC-------CC-eEEEeeCcCCCCHHHHHHHHHHHh---Cccc
Confidence 467778888876644 8999999999888876321 11 236669999999999999999986 3457
Q ss_pred eEeeccccccccccccccCCCCCccccccCcchhHHHHh----CCCeEEEEeCcccc-CHHHHHHHHHHhhcCeeecCCC
Q 003088 691 LRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRR----RPFTLLLLDEIEKA-HPDIFNILLQVFEDGHLTDSHG 765 (849)
Q Consensus 691 i~i~~~~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~i~~----~~~~vl~lDEid~l-~~~~~~~Ll~~le~g~~~~~~g 765 (849)
+.++++. .. ...+ ...+.+.... ..+.||||||+|.+ ....++.|...+++.
T Consensus 72 ~~i~~~~-~~---~~~i------------~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~------- 128 (316)
T PHA02544 72 LFVNGSD-CR---IDFV------------RNRLTRFASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAY------- 128 (316)
T ss_pred eEeccCc-cc---HHHH------------HHHHHHHHHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhc-------
Confidence 7777765 11 0000 0011111111 34689999999999 777888888888862
Q ss_pred ceeecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHHHcc
Q 003088 766 RRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQ 845 (849)
Q Consensus 766 ~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~ 845 (849)
..+++||+|+|.... +.+.+.+|| ..+.|++++.++..+
T Consensus 129 ----~~~~~~Ilt~n~~~~------------------------------------l~~~l~sR~-~~i~~~~p~~~~~~~ 167 (316)
T PHA02544 129 ----SKNCSFIITANNKNG------------------------------------IIEPLRSRC-RVIDFGVPTKEEQIE 167 (316)
T ss_pred ----CCCceEEEEcCChhh------------------------------------chHHHHhhc-eEEEeCCCCHHHHHH
Confidence 246789999985311 568888999 578887877776554
Q ss_pred c
Q 003088 846 L 846 (849)
Q Consensus 846 I 846 (849)
|
T Consensus 168 i 168 (316)
T PHA02544 168 M 168 (316)
T ss_pred H
Confidence 3
No 299
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.21 E-value=7.9e-11 Score=129.56 Aligned_cols=160 Identities=28% Similarity=0.393 Sum_probs=107.1
Q ss_pred cCCHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCC--
Q 003088 611 QITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSES-- 688 (849)
Q Consensus 611 ~~~~~~~~~~~~l~~~l~~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~-- 688 (849)
...|.+++++..+.+ ++|++++++.+...+... .. .+++|+||+|||||++++++++.+++...
T Consensus 4 ~~~w~~kyrP~~~~~-----~~g~~~~~~~l~~~i~~~-------~~--~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~ 69 (319)
T PRK00440 4 EEIWVEKYRPRTLDE-----IVGQEEIVERLKSYVKEK-------NM--PHLLFAGPPGTGKTTAALALARELYGEDWRE 69 (319)
T ss_pred cCccchhhCCCcHHH-----hcCcHHHHHHHHHHHhCC-------CC--CeEEEECCCCCCHHHHHHHHHHHHcCCcccc
Confidence 356788888866644 789999999998887532 11 24999999999999999999999865432
Q ss_pred ceeEeeccccccccccccccCCCCCccccccCcchhHHHHh-----CCCeEEEEeCccccCHHHHHHHHHHhhcCeeecC
Q 003088 689 SMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRR-----RPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDS 763 (849)
Q Consensus 689 ~~i~i~~~~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~i~~-----~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~ 763 (849)
.++.++++........ ...+.+.... .+..+|+|||+|.++...++.|++.++..
T Consensus 70 ~~i~~~~~~~~~~~~~---------------~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~----- 129 (319)
T PRK00440 70 NFLELNASDERGIDVI---------------RNKIKEFARTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMY----- 129 (319)
T ss_pred ceEEeccccccchHHH---------------HHHHHHHHhcCCCCCCCceEEEEeCcccCCHHHHHHHHHHHhcC-----
Confidence 3344433321110000 0111112111 23469999999999999999999999862
Q ss_pred CCceeecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHHH
Q 003088 764 HGRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQV 843 (849)
Q Consensus 764 ~g~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~ 843 (849)
..++++|+++|.... +.+.+.+|+ .++.|.|++.+++
T Consensus 130 ------~~~~~lIl~~~~~~~------------------------------------l~~~l~sr~-~~~~~~~l~~~ei 166 (319)
T PRK00440 130 ------SQNTRFILSCNYSSK------------------------------------IIDPIQSRC-AVFRFSPLKKEAV 166 (319)
T ss_pred ------CCCCeEEEEeCCccc------------------------------------cchhHHHHh-heeeeCCCCHHHH
Confidence 235678888875321 345577777 4688888888887
Q ss_pred cccc
Q 003088 844 CQLP 847 (849)
Q Consensus 844 ~~I~ 847 (849)
.+++
T Consensus 167 ~~~l 170 (319)
T PRK00440 167 AERL 170 (319)
T ss_pred HHHH
Confidence 6654
No 300
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.21 E-value=4.5e-11 Score=139.20 Aligned_cols=161 Identities=19% Similarity=0.343 Sum_probs=102.9
Q ss_pred ccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCC----ceeEe-eccccccccc
Q 003088 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSES----SMLRL-DMSEYMERHT 703 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~----~~i~i-~~~~~~~~~~ 703 (849)
++|+||+.++..+..++...+. ...+||+||+|+|||++|+++++.+.+... ++-.+ +|..+.....
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~i--------~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~ 87 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNKI--------ANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNS 87 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCCC--------CeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCC
Confidence 5699999999999998875321 124999999999999999999999854321 11111 1111111100
Q ss_pred cc--cccCCCCCccccccCcchhHHHH----hCCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEE
Q 003088 704 VS--KLIGSPPGYVGYEEGGLLTEAIR----RRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVM 777 (849)
Q Consensus 704 ~~--~l~g~~~g~vg~~~~~~l~~~i~----~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ 777 (849)
.. .+-|. ...+.+....+.+.+. ...+.|++|||+|.++...+|.|++.||+ ...+++||+
T Consensus 88 ~dv~~idga--s~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEe-----------pp~~~vfI~ 154 (563)
T PRK06647 88 LDVIEIDGA--SNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEE-----------PPPYIVFIF 154 (563)
T ss_pred CCeEEecCc--ccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhcc-----------CCCCEEEEE
Confidence 00 01111 0011111111111112 23467999999999999999999999997 345788888
Q ss_pred ecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHHHcccc
Q 003088 778 TSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQLP 847 (849)
Q Consensus 778 tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~I~ 847 (849)
+++... .+.+.+.+|+ ..+.|.+++.+++.+.+
T Consensus 155 ~tte~~------------------------------------kL~~tI~SRc-~~~~f~~l~~~el~~~L 187 (563)
T PRK06647 155 ATTEVH------------------------------------KLPATIKSRC-QHFNFRLLSLEKIYNML 187 (563)
T ss_pred ecCChH------------------------------------HhHHHHHHhc-eEEEecCCCHHHHHHHH
Confidence 775310 0557888998 57899999988876543
No 301
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.21 E-value=3.8e-11 Score=132.00 Aligned_cols=163 Identities=20% Similarity=0.274 Sum_probs=105.0
Q ss_pred ccccc-cHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCC----CceeE-eecccccccc
Q 003088 629 KRVIG-QDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSE----SSMLR-LDMSEYMERH 702 (849)
Q Consensus 629 ~~i~G-q~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~----~~~i~-i~~~~~~~~~ 702 (849)
+.|+| |+.+++.+...+...+ ....+||+||+|+||+++|+.+++.+.+.+ .++-. -+|..+...+
T Consensus 5 ~~i~~~q~~~~~~L~~~~~~~~--------l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~ 76 (329)
T PRK08058 5 EQLTALQPVVVKMLQNSIAKNR--------LSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGN 76 (329)
T ss_pred HHHHhhHHHHHHHHHHHHHcCC--------CCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCC
Confidence 45677 8889999988886532 122379999999999999999999986532 11100 0111111111
Q ss_pred ccccccCCCCC-ccccccCcchhHHHH----hCCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEE
Q 003088 703 TVSKLIGSPPG-YVGYEEGGLLTEAIR----RRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVM 777 (849)
Q Consensus 703 ~~~~l~g~~~g-~vg~~~~~~l~~~i~----~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ 777 (849)
.++..+-.+.| .++.++...+.+.+. .+.+.|++|||+|.++...+|.||+.||+ +..+++||+
T Consensus 77 hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEE-----------Pp~~~~~Il 145 (329)
T PRK08058 77 HPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEE-----------PSGGTTAIL 145 (329)
T ss_pred CCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcC-----------CCCCceEEE
Confidence 11111111111 122222122222222 23457999999999999999999999998 446888888
Q ss_pred ecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHHHcccc
Q 003088 778 TSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQLP 847 (849)
Q Consensus 778 tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~I~ 847 (849)
+|+... .+.|++.+|+ .++.|.|++.+++.+++
T Consensus 146 ~t~~~~------------------------------------~ll~TIrSRc-~~i~~~~~~~~~~~~~L 178 (329)
T PRK08058 146 LTENKH------------------------------------QILPTILSRC-QVVEFRPLPPESLIQRL 178 (329)
T ss_pred EeCChH------------------------------------hCcHHHHhhc-eeeeCCCCCHHHHHHHH
Confidence 877421 1678999999 89999999998886654
No 302
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.21 E-value=4.8e-11 Score=127.96 Aligned_cols=153 Identities=13% Similarity=0.139 Sum_probs=102.1
Q ss_pred ccccHHHHHHHHHHHhcCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhccccccchHH---
Q 003088 292 VIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELE--- 368 (849)
Q Consensus 292 iiG~~~~i~~l~~~l~~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~~~~~~g~~e--- 368 (849)
++-..+.++.++..+.. ..+++|.|+||||||++|+.+|.++ +.+++.+++...+......|...
T Consensus 47 y~f~~~~~~~vl~~l~~--~~~ilL~G~pGtGKTtla~~lA~~l----------~~~~~rV~~~~~l~~~DliG~~~~~l 114 (327)
T TIGR01650 47 YLFDKATTKAICAGFAY--DRRVMVQGYHGTGKSTHIEQIAARL----------NWPCVRVNLDSHVSRIDLVGKDAIVL 114 (327)
T ss_pred ccCCHHHHHHHHHHHhc--CCcEEEEeCCCChHHHHHHHHHHHH----------CCCeEEEEecCCCChhhcCCCceeec
Confidence 33344455556665543 4589999999999999999999999 45555555433322211111100
Q ss_pred -------HHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcC----------------CCeE
Q 003088 369 -------ARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR----------------GELQ 425 (849)
Q Consensus 369 -------~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~----------------~~i~ 425 (849)
......+-.+.. .+.+|++||++.. ..++++.|..+|+. +.++
T Consensus 115 ~~g~~~~~f~~GpL~~A~~-~g~illlDEin~a-------------~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~Fr 180 (327)
T TIGR01650 115 KDGKQITEFRDGILPWALQ-HNVALCFDEYDAG-------------RPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFR 180 (327)
T ss_pred cCCcceeEEecCcchhHHh-CCeEEEechhhcc-------------CHHHHHHHHHHhccCCeEEECCCceEecCCCCeE
Confidence 001112222222 3578999999988 34555665555541 3478
Q ss_pred EEEccChHH-------HHHHhhccHHHHhccc-cEEecCCCHHHHHHHHHHHH
Q 003088 426 CIASTTQDE-------HRTQFEKDKALARRFQ-PVLISEPSQEDAVRILLGLR 470 (849)
Q Consensus 426 vI~at~~~~-------~~~~~~~d~al~~Rf~-~i~~~~ps~~e~~~iL~~~~ 470 (849)
+|+|+|+.+ |.....++.+++.||. .+.++.|+.++-.+|+....
T Consensus 181 viAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~i~~~~~Yp~~e~E~~Il~~~~ 233 (327)
T TIGR01650 181 LFATANTIGLGDTTGLYHGTQQINQAQMDRWSIVTTLNYLEHDNEAAIVLAKA 233 (327)
T ss_pred EEEeeCCCCcCCCCcceeeeecCCHHHHhheeeEeeCCCCCHHHHHHHHHhhc
Confidence 999999876 8888899999999997 57899999999999996643
No 303
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=99.20 E-value=7.1e-11 Score=128.10 Aligned_cols=174 Identities=20% Similarity=0.244 Sum_probs=111.1
Q ss_pred HhccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeecccccccccc--
Q 003088 627 LKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTV-- 704 (849)
Q Consensus 627 l~~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~-- 704 (849)
++..++||+..+..|...... ..++.+|+.|+.|||||+++|+|+..|-. ...+. +|.-..+...+
T Consensus 15 pf~aivGqd~lk~aL~l~av~---------P~iggvLI~G~kGtaKSt~~Rala~LLp~--~~~V~-gc~f~cdP~~P~~ 82 (423)
T COG1239 15 PFTAIVGQDPLKLALGLNAVD---------PQIGGALIAGEKGTAKSTLARALADLLPE--IEVVI-GCPFNCDPDDPEE 82 (423)
T ss_pred chhhhcCchHHHHHHhhhhcc---------cccceeEEecCCCccHHHHHHHHHHhCCc--cceec-CCCCCCCCCChhh
Confidence 456799999988776444221 12456999999999999999999999822 11111 22110000000
Q ss_pred ---------------------ccccCCCCCc-----cc---------cccCcchhHHHHhCCCeEEEEeCccccCHHHHH
Q 003088 705 ---------------------SKLIGSPPGY-----VG---------YEEGGLLTEAIRRRPFTLLLLDEIEKAHPDIFN 749 (849)
Q Consensus 705 ---------------------~~l~g~~~g~-----vg---------~~~~~~l~~~i~~~~~~vl~lDEid~l~~~~~~ 749 (849)
..+.+.|-+- +| ++....-.+.+.+++.|||||||+..++..+|+
T Consensus 83 ~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d~lvd 162 (423)
T COG1239 83 MCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDDHLVD 162 (423)
T ss_pred hhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccccHHHHH
Confidence 0122222111 11 011111223455677899999999999999999
Q ss_pred HHHHHhhcCe-eecCCCceeecC-CeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhh
Q 003088 750 ILLQVFEDGH-LTDSHGRRVSFK-NALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLN 827 (849)
Q Consensus 750 ~Ll~~le~g~-~~~~~g~~~~~~-~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~ 827 (849)
.||+++++|. .....|-.+.++ ++++|.|+|+. .+. ++|.|++
T Consensus 163 ~LLd~aaeG~n~vereGisi~hpa~fvligTmNPE------eGe-----------------------------LrpqLlD 207 (423)
T COG1239 163 ALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPE------EGE-----------------------------LRPQLLD 207 (423)
T ss_pred HHHHHHHhCCceeeeCceeeccCccEEEEeecCcc------ccc-----------------------------cchhhHh
Confidence 9999999984 333457777776 99999999984 111 8899999
Q ss_pred ccccEEEcCCC-CHHHHcccc
Q 003088 828 RIDEVVVFRSL-EKAQVCQLP 847 (849)
Q Consensus 828 R~d~~i~f~pl-~~~~~~~I~ 847 (849)
||...|...+. +.++..+|+
T Consensus 208 Rfg~~v~~~~~~~~~~rv~Ii 228 (423)
T COG1239 208 RFGLEVDTHYPLDLEERVEII 228 (423)
T ss_pred hhcceeeccCCCCHHHHHHHH
Confidence 99877665544 455554443
No 304
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.20 E-value=1.8e-10 Score=134.00 Aligned_cols=193 Identities=14% Similarity=0.097 Sum_probs=115.1
Q ss_pred HHHHHHHHhccccccHHHHHHHHHHHHHhhcC-C--CCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEe---
Q 003088 620 LVGLEEQLKKRVIGQDEAVAAISRAVKRSRVG-L--KDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRL--- 693 (849)
Q Consensus 620 ~~~l~~~l~~~i~Gq~~~i~~l~~~l~~~~~g-~--~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i--- 693 (849)
...+.+.+...|+|++.++..+.-++.....- . ...-+...|+||+|+||||||++|+.+++.+.+. .++..
T Consensus 194 ~~~l~~si~p~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~--~~~~~~~~ 271 (509)
T smart00350 194 YERLSRSLAPSIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRA--VYTTGKGS 271 (509)
T ss_pred HHHHHHhhCccccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcc--eEcCCCCC
Confidence 45667777888999999877765555322100 0 0011223479999999999999999999986322 23321
Q ss_pred eccccccccccccccCCCCCccccccCcchhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhhcCeeecC-CCceeec-C
Q 003088 694 DMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRRRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDS-HGRRVSF-K 771 (849)
Q Consensus 694 ~~~~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~i~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~-~g~~~~~-~ 771 (849)
++..+... .+.. + ..|. ...-.+++..+.+|+++|||++++++..|..|+++|+.+.++.. .|..... .
T Consensus 272 ~~~~l~~~----~~~~-~--~~g~--~~~~~G~l~~A~~Gil~iDEi~~l~~~~q~~L~e~me~~~i~i~k~G~~~~l~~ 342 (509)
T smart00350 272 SAVGLTAA----VTRD-P--ETRE--FTLEGGALVLADNGVCCIDEFDKMDDSDRTAIHEAMEQQTISIAKAGITTTLNA 342 (509)
T ss_pred CcCCcccc----ceEc-c--Ccce--EEecCccEEecCCCEEEEechhhCCHHHHHHHHHHHhcCEEEEEeCCEEEEecC
Confidence 11111110 0000 0 0010 00112234456789999999999999999999999999987653 3444444 4
Q ss_pred CeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEc-CCCCHHHHccc
Q 003088 772 NALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVF-RSLEKAQVCQL 846 (849)
Q Consensus 772 ~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f-~pl~~~~~~~I 846 (849)
+++||+|+|+-... |.... .+...+ .++|.+++|||.++.. .+++++.-.+|
T Consensus 343 ~~~viAa~NP~~g~----------y~~~~-------~~~~n~------~l~~~lLsRFdLi~~~~d~~~~~~d~~i 395 (509)
T smart00350 343 RCSVLAAANPIGGR----------YDPKL-------TPEENI------DLPAPILSRFDLLFVVLDEVDEERDREL 395 (509)
T ss_pred CcEEEEEeCCCCcc----------cCCCc-------Chhhcc------CCChHHhCceeeEEEecCCCChHHHHHH
Confidence 89999999973211 11000 000000 1889999999975554 55665543333
No 305
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=4.5e-11 Score=136.70 Aligned_cols=158 Identities=25% Similarity=0.376 Sum_probs=108.4
Q ss_pred ccccccHHHHHHHHHHHHH-------hhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccc
Q 003088 629 KRVIGQDEAVAAISRAVKR-------SRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMER 701 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~-------~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~ 701 (849)
+++.|.+++++.+.+.+.. ...|..-| . .+|++||||||||++|+++|.. .+.||..+..+++.+
T Consensus 150 ~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiP---k-GvlLvGpPGTGKTLLAkAvAgE---A~VPFf~iSGS~FVe- 221 (596)
T COG0465 150 ADVAGVDEAKEELSELVDFLKNPKKYQALGAKIP---K-GVLLVGPPGTGKTLLAKAVAGE---AGVPFFSISGSDFVE- 221 (596)
T ss_pred hhhcCcHHHHHHHHHHHHHHhCchhhHhcccccc---c-ceeEecCCCCCcHHHHHHHhcc---cCCCceeccchhhhh-
Confidence 4567777777776666643 23343333 2 3999999999999999999977 588999999988865
Q ss_pred cccccccCCCCCccccccCcchhHHHHhCCCeEEEEeCccccCH--------------HHHHHHHHHhhcCeeecCCCce
Q 003088 702 HTVSKLIGSPPGYVGYEEGGLLTEAIRRRPFTLLLLDEIEKAHP--------------DIFNILLQVFEDGHLTDSHGRR 767 (849)
Q Consensus 702 ~~~~~l~g~~~g~vg~~~~~~l~~~i~~~~~~vl~lDEid~l~~--------------~~~~~Ll~~le~g~~~~~~g~~ 767 (849)
.+.|. |...-..+++..++..+||+||||||.... ...|+||..||...
T Consensus 222 ----mfVGv-----GAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~-------- 284 (596)
T COG0465 222 ----MFVGV-----GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFG-------- 284 (596)
T ss_pred ----hhcCC-----CcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCC--------
Confidence 23332 222223344433444459999999998732 37899999998622
Q ss_pred eecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHh--hccccEEEcCCCCHHHHcc
Q 003088 768 VSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELL--NRIDEVVVFRSLEKAQVCQ 845 (849)
Q Consensus 768 ~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell--~R~d~~i~f~pl~~~~~~~ 845 (849)
....+++|++||... .++|+|+ .|||..|....++-...++
T Consensus 285 -~~~gviviaaTNRpd------------------------------------VlD~ALlRpgRFDRqI~V~~PDi~gRe~ 327 (596)
T COG0465 285 -GNEGVIVIAATNRPD------------------------------------VLDPALLRPGRFDRQILVELPDIKGREQ 327 (596)
T ss_pred -CCCceEEEecCCCcc------------------------------------cchHhhcCCCCcceeeecCCcchhhHHH
Confidence 113577888888742 1667777 8999888888888666666
Q ss_pred ccC
Q 003088 846 LPL 848 (849)
Q Consensus 846 I~~ 848 (849)
|++
T Consensus 328 Ilk 330 (596)
T COG0465 328 ILK 330 (596)
T ss_pred HHH
Confidence 553
No 306
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=1.5e-11 Score=130.26 Aligned_cols=160 Identities=19% Similarity=0.271 Sum_probs=101.5
Q ss_pred ccccccHHHHHHHHHHHHHhhcC-----CCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccc
Q 003088 629 KRVIGQDEAVAAISRAVKRSRVG-----LKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHT 703 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~~~~g-----~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~ 703 (849)
++|-|.+.+++++...+...-.. ...--+|...+|++||||||||++|+++|+.. +.+|+.+.++.+.++
T Consensus 92 ~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akea---ga~fInv~~s~lt~K-- 166 (386)
T KOG0737|consen 92 DDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEA---GANFINVSVSNLTSK-- 166 (386)
T ss_pred hhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHc---CCCcceeeccccchh--
Confidence 34555555565555554321000 01113344559999999999999999999984 788999999998764
Q ss_pred cccccCCCCCccccccCcchhHH----HHhCCCeEEEEeCccccC-------HHH----HHHHHHHhhcCeeecCCCcee
Q 003088 704 VSKLIGSPPGYVGYEEGGLLTEA----IRRRPFTLLLLDEIEKAH-------PDI----FNILLQVFEDGHLTDSHGRRV 768 (849)
Q Consensus 704 ~~~l~g~~~g~vg~~~~~~l~~~----i~~~~~~vl~lDEid~l~-------~~~----~~~Ll~~le~g~~~~~~g~~~ 768 (849)
|.|+.+ .+..+ ..+-.++++||||+|.+- .++ -++|+. +-+|-.++.
T Consensus 167 ----------WfgE~e--Klv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~-~WDGl~s~~----- 228 (386)
T KOG0737|consen 167 ----------WFGEAQ--KLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMA-LWDGLSSKD----- 228 (386)
T ss_pred ----------hHHHHH--HHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHH-HhccccCCC-----
Confidence 233332 23332 234457999999999873 222 222222 223322221
Q ss_pred ecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHHHccccC
Q 003088 769 SFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQLPL 848 (849)
Q Consensus 769 ~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~I~~ 848 (849)
...++|+.+||.+.+ ++.++++|+...+...-++.++..+|++
T Consensus 229 -~~rVlVlgATNRP~D------------------------------------lDeAiiRR~p~rf~V~lP~~~qR~kILk 271 (386)
T KOG0737|consen 229 -SERVLVLGATNRPFD------------------------------------LDEAIIRRLPRRFHVGLPDAEQRRKILK 271 (386)
T ss_pred -CceEEEEeCCCCCcc------------------------------------HHHHHHHhCcceeeeCCCchhhHHHHHH
Confidence 125788889998643 6788999998888877777777777765
No 307
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=6.1e-11 Score=122.25 Aligned_cols=129 Identities=25% Similarity=0.435 Sum_probs=87.1
Q ss_pred ccccccHHHHHHHHHHHHH--------hhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeecccccc
Q 003088 629 KRVIGQDEAVAAISRAVKR--------SRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYME 700 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~--------~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~ 700 (849)
+.+-|.-..+..+.+.+.. .+.|++.|. .+++|||||||||.+|++++..+ +.+|+.+-.+++.+
T Consensus 132 ~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pk----g~ll~GppGtGKTlla~~Vaa~m---g~nfl~v~ss~lv~ 204 (388)
T KOG0651|consen 132 ENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPK----GLLLYGPPGTGKTLLARAVAATM---GVNFLKVVSSALVD 204 (388)
T ss_pred HHhCChHHHHHHHHhheEeeccCchhccccCCCCCc----eeEEeCCCCCchhHHHHHHHHhc---CCceEEeeHhhhhh
Confidence 4566666667766665532 344555443 39999999999999999999987 66788887777654
Q ss_pred ccccccccCCCCCccccccCcchhHH---HHhCCCeEEEEeCcccc-----------CHHHHHHHHHHhhcCeeecCCCc
Q 003088 701 RHTVSKLIGSPPGYVGYEEGGLLTEA---IRRRPFTLLLLDEIEKA-----------HPDIFNILLQVFEDGHLTDSHGR 766 (849)
Q Consensus 701 ~~~~~~l~g~~~g~vg~~~~~~l~~~---i~~~~~~vl~lDEid~l-----------~~~~~~~Ll~~le~g~~~~~~g~ 766 (849)
+ |+|+.. ..+.+. .++...||+|+||||.. +..+|..|+.+++.-.-.|
T Consensus 205 k------------yiGEsa-RlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd---- 267 (388)
T KOG0651|consen 205 K------------YIGESA-RLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFD---- 267 (388)
T ss_pred h------------hcccHH-HHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccch----
Confidence 2 445432 222222 23344699999999955 5678999998887421111
Q ss_pred eeecCCeEEEEecCCCc
Q 003088 767 RVSFKNALIVMTSNVGS 783 (849)
Q Consensus 767 ~~~~~~~~iI~tsn~~~ 783 (849)
....+-+|+|+|.+.
T Consensus 268 --~l~rVk~ImatNrpd 282 (388)
T KOG0651|consen 268 --TLHRVKTIMATNRPD 282 (388)
T ss_pred --hcccccEEEecCCcc
Confidence 134677999999753
No 308
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.19 E-value=9.7e-10 Score=134.78 Aligned_cols=183 Identities=18% Similarity=0.245 Sum_probs=123.5
Q ss_pred CCCccccHHHHHHHHHHHhcC-------CC--CCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhc
Q 003088 289 IDPVIGRETEIQRIIQILCRR-------TK--NNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA 359 (849)
Q Consensus 289 l~~iiG~~~~i~~l~~~l~~~-------~~--~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~ 359 (849)
.+.++|++..++.+...+.+. .+ ..++|+||+|||||++|++|++.+... +..++.++++.+..
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~-------~~~~i~id~se~~~ 639 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDS-------DDAMVRIDMSEFME 639 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcC-------CCcEEEEEhHHhhh
Confidence 457999999999988877432 11 357999999999999999999988543 23456666655431
Q ss_pred c----------ccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCCC------
Q 003088 360 G----------AKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGE------ 423 (849)
Q Consensus 360 ~----------~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~~------ 423 (849)
. ..+.|.-+ -..+.+.++..+.+||||||++.+ ..++++.|..+++.|.
T Consensus 640 ~~~~~~LiG~~pgy~g~~~--~g~l~~~v~~~p~~vLllDEieka-------------~~~v~~~Ll~ile~g~l~d~~g 704 (857)
T PRK10865 640 KHSVSRLVGAPPGYVGYEE--GGYLTEAVRRRPYSVILLDEVEKA-------------HPDVFNILLQVLDDGRLTDGQG 704 (857)
T ss_pred hhhHHHHhCCCCcccccch--hHHHHHHHHhCCCCeEEEeehhhC-------------CHHHHHHHHHHHhhCceecCCc
Confidence 1 01111111 111233344455689999999988 5678999999887653
Q ss_pred -------eEEEEccChH--HHHH------------------HhhccHHHHhccc-cEEecCCCHHHHHHHHHHHHHHHHh
Q 003088 424 -------LQCIASTTQD--EHRT------------------QFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEA 475 (849)
Q Consensus 424 -------i~vI~at~~~--~~~~------------------~~~~d~al~~Rf~-~i~~~~ps~~e~~~iL~~~~~~~~~ 475 (849)
.++|+|||.. .+.. .-...|+|.+|+. .+.|.+++.++..+|++..+.+...
T Consensus 705 r~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~l~~ 784 (857)
T PRK10865 705 RTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYK 784 (857)
T ss_pred eEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHHHHH
Confidence 2478888862 1110 0123578999995 7999999999999998887665422
Q ss_pred -----hcCCccCHHHHHHHHHhh
Q 003088 476 -----HHNCKFTLEAINAAVHLS 493 (849)
Q Consensus 476 -----~~~~~i~~~~l~~~a~ls 493 (849)
...+.++++++..++...
T Consensus 785 rl~~~gi~l~is~~al~~L~~~g 807 (857)
T PRK10865 785 RLEERGYEIHISDEALKLLSENG 807 (857)
T ss_pred HHHhCCCcCcCCHHHHHHHHHcC
Confidence 234578999998887643
No 309
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.19 E-value=9.9e-11 Score=115.20 Aligned_cols=142 Identities=16% Similarity=0.145 Sum_probs=95.3
Q ss_pred ccHHHHHHHHHHHhcCCCCC-CeEeCCCCChHHHHHHHHHHHhhhCCCCcc-------------ccCCeEEEeehhhhhc
Q 003088 294 GRETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEVPVF-------------LLSKRIMSLDMGLLMA 359 (849)
Q Consensus 294 G~~~~i~~l~~~l~~~~~~n-iLL~GppGtGKT~la~~la~~l~~~~~p~~-------------~~~~~~~~l~~~~~~~ 359 (849)
|+++.++.|...+...+.+| +||+||+|+||+++|..+|+.+........ .....++.++....
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~-- 78 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKK-- 78 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTS--
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccc--
Confidence 78899999999999888888 599999999999999999999876543311 11223333322111
Q ss_pred cccccchHHHHHHHHHHHHHh----cCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCC--CeEEEEccChH
Q 003088 360 GAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG--ELQCIASTTQD 433 (849)
Q Consensus 360 ~~~~~g~~e~~l~~l~~~~~~----~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~--~i~vI~at~~~ 433 (849)
.+.-..+.++.+.+.+.. ++..|++|||+|.| ..+++|.|+..||++ .+.+|.+|+..
T Consensus 79 ---~~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l-------------~~~a~NaLLK~LEepp~~~~fiL~t~~~ 142 (162)
T PF13177_consen 79 ---KKSIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKL-------------TEEAQNALLKTLEEPPENTYFILITNNP 142 (162)
T ss_dssp ---SSSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS--------------HHHHHHHHHHHHSTTTTEEEEEEES-G
T ss_pred ---cchhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhh-------------hHHHHHHHHHHhcCCCCCEEEEEEECCh
Confidence 001112345555555432 35679999999999 678999999999965 67888888877
Q ss_pred HHHHHhhccHHHHhccccEEecCCC
Q 003088 434 EHRTQFEKDKALARRFQPVLISEPS 458 (849)
Q Consensus 434 ~~~~~~~~d~al~~Rf~~i~~~~ps 458 (849)
+ .+-+.+++||+.+.|+++|
T Consensus 143 ~-----~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 143 S-----KILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp G-----GS-HHHHTTSEEEEE----
T ss_pred H-----HChHHHHhhceEEecCCCC
Confidence 6 7899999999999998764
No 310
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.18 E-value=1.7e-10 Score=125.95 Aligned_cols=163 Identities=21% Similarity=0.283 Sum_probs=102.1
Q ss_pred CCCccccHHHHHHHHHHHhcCCCCCCeEeCCCCChHHHHHHHHHHHhhhCC----CCcc---------ccCCeEEE----
Q 003088 289 IDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAE----VPVF---------LLSKRIMS---- 351 (849)
Q Consensus 289 l~~iiG~~~~i~~l~~~l~~~~~~niLL~GppGtGKT~la~~la~~l~~~~----~p~~---------~~~~~~~~---- 351 (849)
|..++|+++.+..++-.+-.+...+++|.|++|+|||+++++++..+.... .|.. ..+|+...
T Consensus 3 f~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 82 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMMCEEVRIRVDSQE 82 (337)
T ss_pred ccccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccccChHHhhhhhccc
Confidence 668999999999987777667778999999999999999999998873210 0100 00111100
Q ss_pred -----------eehhhhhccccccc--hHHHHHHH---HHH--HHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHH
Q 003088 352 -----------LDMGLLMAGAKERG--ELEARVTT---LIS--EIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISN 413 (849)
Q Consensus 352 -----------l~~~~~~~~~~~~g--~~e~~l~~---l~~--~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~ 413 (849)
.++..-.......| +++..++. .++ .+....+.+|||||++.+ ....++
T Consensus 83 ~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L-------------~~~~Q~ 149 (337)
T TIGR02030 83 PLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLL-------------EDHLVD 149 (337)
T ss_pred ccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhC-------------CHHHHH
Confidence 11111000000111 11111110 000 111234579999999999 456777
Q ss_pred HHhhhhcCCC---------------eEEEEccChHHHHHHhhccHHHHhccc-cEEecCCCH-HHHHHHHHH
Q 003088 414 LLKPSLGRGE---------------LQCIASTTQDEHRTQFEKDKALARRFQ-PVLISEPSQ-EDAVRILLG 468 (849)
Q Consensus 414 ~L~~~le~~~---------------i~vI~at~~~~~~~~~~~d~al~~Rf~-~i~~~~ps~-~e~~~iL~~ 468 (849)
.|..+++.+. +.+|+++|..+ -.+.++|..||. .+.++.|+. +++.+|++.
T Consensus 150 ~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~e----g~l~~~LldRf~l~i~l~~p~~~eer~eIL~~ 217 (337)
T TIGR02030 150 VLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEE----GELRPQLLDRFGLHAEIRTVRDVELRVEIVER 217 (337)
T ss_pred HHHHHHHhCCeEEEECCEEEEcCCCEEEEecccccc----CCCCHHHHhhcceEEECCCCCCHHHHHHHHHh
Confidence 8877776542 56777777654 257899999998 688998865 888888876
No 311
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.18 E-value=5.5e-11 Score=140.38 Aligned_cols=134 Identities=22% Similarity=0.363 Sum_probs=81.0
Q ss_pred ccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCC-----ceeEe-ecccccccc
Q 003088 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSES-----SMLRL-DMSEYMERH 702 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~-----~~i~i-~~~~~~~~~ 702 (849)
++|+||+.+++.|..++...+.+ ..+||+||+|+|||++|+.+++.+.+... ++-.+ .|..+....
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~i~--------~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~ 87 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGRVA--------HAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGS 87 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCc--------eEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCC
Confidence 56999999999998888754321 23799999999999999999998853211 11100 011111111
Q ss_pred ccccccCCCCCccccccCcchhHHHHh----CCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEe
Q 003088 703 TVSKLIGSPPGYVGYEEGGLLTEAIRR----RPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMT 778 (849)
Q Consensus 703 ~~~~l~g~~~g~vg~~~~~~l~~~i~~----~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~t 778 (849)
....+.-.+.+..+.+....+.+.+.. ..+.||||||+|.++.+.+|.|++.||+ ...+++||++
T Consensus 88 ~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEe-----------pp~~tv~Il~ 156 (585)
T PRK14950 88 AVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEE-----------PPPHAIFILA 156 (585)
T ss_pred CCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhc-----------CCCCeEEEEE
Confidence 110000000011222211122222222 3467999999999999999999999998 2346778877
Q ss_pred cCC
Q 003088 779 SNV 781 (849)
Q Consensus 779 sn~ 781 (849)
++.
T Consensus 157 t~~ 159 (585)
T PRK14950 157 TTE 159 (585)
T ss_pred eCC
Confidence 653
No 312
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.18 E-value=5.8e-11 Score=117.51 Aligned_cols=136 Identities=21% Similarity=0.306 Sum_probs=95.3
Q ss_pred cCCHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCC--CC
Q 003088 611 QITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGS--ES 688 (849)
Q Consensus 611 ~~~~~~~~~~~~l~~~l~~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~--~~ 688 (849)
.+.|.+++++..+.+ |+|.++.++.+....... +. .|++|.||||||||+.+.+||+.+.|. +.
T Consensus 14 ~l~wVeKYrP~~l~d-----IVGNe~tv~rl~via~~g-------nm--P~liisGpPG~GKTTsi~~LAr~LLG~~~ke 79 (333)
T KOG0991|consen 14 QLPWVEKYRPSVLQD-----IVGNEDTVERLSVIAKEG-------NM--PNLIISGPPGTGKTTSILCLARELLGDSYKE 79 (333)
T ss_pred cchHHHhhCchHHHH-----hhCCHHHHHHHHHHHHcC-------CC--CceEeeCCCCCchhhHHHHHHHHHhChhhhh
Confidence 355888888877644 999999999886655532 22 369999999999999999999999773 23
Q ss_pred ceeEeeccccccccccccccCCCCCccccccCcchhHHHHh------CCCeEEEEeCccccCHHHHHHHHHHhhcCeeec
Q 003088 689 SMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRR------RPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTD 762 (849)
Q Consensus 689 ~~i~i~~~~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~i~~------~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~ 762 (849)
.+..++.++-..-..+ +..+..+..+ ..+.|++|||+|++...+|.+|.+.||-
T Consensus 80 ~vLELNASdeRGIDvV---------------Rn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQQAlRRtMEi----- 139 (333)
T KOG0991|consen 80 AVLELNASDERGIDVV---------------RNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRRTMEI----- 139 (333)
T ss_pred HhhhccCccccccHHH---------------HHHHHHHHHhhccCCCCceeEEEeeccchhhhHHHHHHHHHHHH-----
Confidence 4555655543221100 0011111111 2357999999999999999999999985
Q ss_pred CCCceeecCCeEEEEecCCCchhh
Q 003088 763 SHGRRVSFKNALIVMTSNVGSTTI 786 (849)
Q Consensus 763 ~~g~~~~~~~~~iI~tsn~~~~~l 786 (849)
....++|.++||.....+
T Consensus 140 ------yS~ttRFalaCN~s~KIi 157 (333)
T KOG0991|consen 140 ------YSNTTRFALACNQSEKII 157 (333)
T ss_pred ------Hcccchhhhhhcchhhhh
Confidence 335789999999865544
No 313
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.18 E-value=2.9e-10 Score=127.36 Aligned_cols=154 Identities=18% Similarity=0.234 Sum_probs=94.1
Q ss_pred CCccccHHHHHHHHHHHhcCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhc-----ccccc
Q 003088 290 DPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA-----GAKER 364 (849)
Q Consensus 290 ~~iiG~~~~i~~l~~~l~~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~-----~~~~~ 364 (849)
+.++|+++.++.+..++. ...|+||.||||||||++|++|+..+.... +.....+++. ....+.. ..+..
T Consensus 20 ~~i~gre~vI~lll~aal--ag~hVLL~GpPGTGKT~LAraLa~~~~~~~-~F~~~~~~ft--tp~DLfG~l~i~~~~~~ 94 (498)
T PRK13531 20 KGLYERSHAIRLCLLAAL--SGESVFLLGPPGIAKSLIARRLKFAFQNAR-AFEYLMTRFS--TPEEVFGPLSIQALKDE 94 (498)
T ss_pred hhccCcHHHHHHHHHHHc--cCCCEEEECCCChhHHHHHHHHHHHhcccC-cceeeeeeec--CcHHhcCcHHHhhhhhc
Confidence 368999999999988775 456999999999999999999999875432 2222222211 1111111 00112
Q ss_pred chHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCCC------------eEEEEccCh
Q 003088 365 GELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGE------------LQCIASTTQ 432 (849)
Q Consensus 365 g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~~------------i~vI~at~~ 432 (849)
|.++...+..+. ...+||+|||+.+ +...++.|+.+++.+. ..+++|||+
T Consensus 95 g~f~r~~~G~L~-----~A~lLfLDEI~ra-------------sp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~ 156 (498)
T PRK13531 95 GRYQRLTSGYLP-----EAEIVFLDEIWKA-------------GPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNE 156 (498)
T ss_pred CchhhhcCCccc-----cccEEeecccccC-------------CHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCC
Confidence 222211111010 1129999999977 5677888888885322 244555553
Q ss_pred HHHHHHhhccHHHHhccc-cEEecCCC-HHHHHHHHHH
Q 003088 433 DEHRTQFEKDKALARRFQ-PVLISEPS-QEDAVRILLG 468 (849)
Q Consensus 433 ~~~~~~~~~d~al~~Rf~-~i~~~~ps-~~e~~~iL~~ 468 (849)
-+ ..-...+++..||. .|.+++|+ .++-.+||..
T Consensus 157 LP--E~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~ 192 (498)
T PRK13531 157 LP--EADSSLEALYDRMLIRLWLDKVQDKANFRSMLTS 192 (498)
T ss_pred Cc--ccCCchHHhHhhEEEEEECCCCCchHHHHHHHHc
Confidence 32 00012358999996 69999997 4555788865
No 314
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.17 E-value=5.8e-10 Score=121.90 Aligned_cols=168 Identities=20% Similarity=0.216 Sum_probs=110.2
Q ss_pred hcCCCCC-CeEeCCCCChHHHHHHHHHHHhhhCCCCc--ccc------------CCeEEEeehhhhhccccccchHHHHH
Q 003088 307 CRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEVPV--FLL------------SKRIMSLDMGLLMAGAKERGELEARV 371 (849)
Q Consensus 307 ~~~~~~n-iLL~GppGtGKT~la~~la~~l~~~~~p~--~~~------------~~~~~~l~~~~~~~~~~~~g~~e~~l 371 (849)
...+.+| +||+||+|+|||++|+.+|+.+.+..... ... +-.++.+... .+.+ .--.+.+
T Consensus 17 ~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~---~~~~--~i~id~i 91 (328)
T PRK05707 17 GRGRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPE---EADK--TIKVDQV 91 (328)
T ss_pred HCCCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecc---CCCC--CCCHHHH
Confidence 3344455 68999999999999999999997642110 000 1122222110 0001 1123445
Q ss_pred HHHHHHHHh----cCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcC--CCeEEEEccChHHHHHHhhccHHH
Q 003088 372 TTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--GELQCIASTTQDEHRTQFEKDKAL 445 (849)
Q Consensus 372 ~~l~~~~~~----~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~--~~i~vI~at~~~~~~~~~~~d~al 445 (849)
+++.+.+.. ++..|++||++|.| +.+++|.|++.||. ++..+|.+|+..+ .+.|.+
T Consensus 92 R~l~~~~~~~~~~~~~kv~iI~~a~~m-------------~~~aaNaLLK~LEEPp~~~~fiL~t~~~~-----~ll~TI 153 (328)
T PRK05707 92 RELVSFVVQTAQLGGRKVVLIEPAEAM-------------NRNAANALLKSLEEPSGDTVLLLISHQPS-----RLLPTI 153 (328)
T ss_pred HHHHHHHhhccccCCCeEEEECChhhC-------------CHHHHHHHHHHHhCCCCCeEEEEEECChh-----hCcHHH
Confidence 555555542 45678999999999 56789999999997 4688888888776 788999
Q ss_pred HhccccEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhcccccCcchhhHHHHHH
Q 003088 446 ARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVD 511 (849)
Q Consensus 446 ~~Rf~~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~~~r~~p~~ai~ll~ 511 (849)
+|||+.+.|++|+.++..+.|..... ..+++....++.++++ -|.+|+.+++
T Consensus 154 ~SRc~~~~~~~~~~~~~~~~L~~~~~--------~~~~~~~~~~l~la~G------sp~~A~~l~~ 205 (328)
T PRK05707 154 KSRCQQQACPLPSNEESLQWLQQALP--------ESDERERIELLTLAGG------SPLRALQLHE 205 (328)
T ss_pred HhhceeeeCCCcCHHHHHHHHHHhcc--------cCChHHHHHHHHHcCC------CHHHHHHHHC
Confidence 99999999999999998888754211 2345555555666654 2445555543
No 315
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=99.17 E-value=1.1e-10 Score=126.39 Aligned_cols=160 Identities=14% Similarity=0.221 Sum_probs=106.1
Q ss_pred ccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCC----CceeEe-eccccccccccc
Q 003088 631 VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSE----SSMLRL-DMSEYMERHTVS 705 (849)
Q Consensus 631 i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~----~~~i~i-~~~~~~~~~~~~ 705 (849)
..|+....+.+..++...+.. ..+||+||+|+||+++|+.+|+.+...+ .++-.+ .|..+.....++
T Consensus 4 yPW~~~~~~~l~~~~~~~rl~--------HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD 75 (325)
T PRK06871 4 YPWLQPTYQQITQAFQQGLGH--------HALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPD 75 (325)
T ss_pred CcchHHHHHHHHHHHHcCCcc--------eeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCC
Confidence 467778888888887764321 2499999999999999999999986532 111111 111111111111
Q ss_pred c-ccCC-CCCccccccCcchhHHHHhC----CCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEec
Q 003088 706 K-LIGS-PPGYVGYEEGGLLTEAIRRR----PFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTS 779 (849)
Q Consensus 706 ~-l~g~-~~g~vg~~~~~~l~~~i~~~----~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ts 779 (849)
- ++.. ....+|.++...+.+.+... .+.|++||++|+|+..++|.||+.||+ +..+++||++|
T Consensus 76 ~~~i~p~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEE-----------Pp~~~~fiL~t 144 (325)
T PRK06871 76 FHILEPIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEE-----------PRPNTYFLLQA 144 (325)
T ss_pred EEEEccccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcC-----------CCCCeEEEEEE
Confidence 1 1111 01123333333343444333 357999999999999999999999999 55688999988
Q ss_pred CCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHHHccc
Q 003088 780 NVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQL 846 (849)
Q Consensus 780 n~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~I 846 (849)
+.... +.|.+++|| ..+.|.|++.+++.+.
T Consensus 145 ~~~~~------------------------------------llpTI~SRC-~~~~~~~~~~~~~~~~ 174 (325)
T PRK06871 145 DLSAA------------------------------------LLPTIYSRC-QTWLIHPPEEQQALDW 174 (325)
T ss_pred CChHh------------------------------------CchHHHhhc-eEEeCCCCCHHHHHHH
Confidence 75321 778999999 8999999998887643
No 316
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=99.16 E-value=1.1e-10 Score=126.49 Aligned_cols=162 Identities=17% Similarity=0.227 Sum_probs=105.2
Q ss_pred cccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCC-ceeEeeccccccc--ccccc
Q 003088 630 RVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSES-SMLRLDMSEYMER--HTVSK 706 (849)
Q Consensus 630 ~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~-~~i~i~~~~~~~~--~~~~~ 706 (849)
-..++..+.+.+..++...+. | ..+||+||+|+||+++|.++|+.+.+.+. +.-...+...... |..-.
T Consensus 5 ~yPW~~~~~~~l~~~~~~~rl-------~-HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~ 76 (319)
T PRK08769 5 FSPWQQRAYDQTVAALDAGRL-------G-HGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQ 76 (319)
T ss_pred ccccHHHHHHHHHHHHHcCCc-------c-eeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEE
Confidence 356888888888888765422 1 23999999999999999999999865431 1111111111111 11111
Q ss_pred ccC-CCCC-------ccccccCcchhHHHHhC----CCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeE
Q 003088 707 LIG-SPPG-------YVGYEEGGLLTEAIRRR----PFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNAL 774 (849)
Q Consensus 707 l~g-~~~g-------~vg~~~~~~l~~~i~~~----~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~ 774 (849)
++. .|.+ .++.+....+.+.+... .+.|++||++|+|+...+|.||+.||+ +..+++
T Consensus 77 ~i~~~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEE-----------Pp~~~~ 145 (319)
T PRK08769 77 LVSFIPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEE-----------PSPGRY 145 (319)
T ss_pred EEecCCCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhC-----------CCCCCe
Confidence 121 1211 01122222233333333 347999999999999999999999999 456888
Q ss_pred EEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHHHcccc
Q 003088 775 IVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQLP 847 (849)
Q Consensus 775 iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~I~ 847 (849)
||++|+.... +.|.+.+|| ..+.|.+++.+++...+
T Consensus 146 fiL~~~~~~~------------------------------------lLpTIrSRC-q~i~~~~~~~~~~~~~L 181 (319)
T PRK08769 146 LWLISAQPAR------------------------------------LPATIRSRC-QRLEFKLPPAHEALAWL 181 (319)
T ss_pred EEEEECChhh------------------------------------CchHHHhhh-eEeeCCCcCHHHHHHHH
Confidence 8888875321 679999999 88999999988876543
No 317
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.15 E-value=1.4e-10 Score=130.06 Aligned_cols=159 Identities=20% Similarity=0.375 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCC-----
Q 003088 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSES----- 688 (849)
Q Consensus 614 ~~~~~~~~~l~~~l~~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~----- 688 (849)
+.+++++..+ ++++||+.+++.+...+.... ...++||+||||+|||++|+++++.+.+...
T Consensus 7 ~~~k~rP~~~-----~~iig~~~~~~~l~~~i~~~~--------~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~ 73 (367)
T PRK14970 7 SARKYRPQTF-----DDVVGQSHITNTLLNAIENNH--------LAQALLFCGPRGVGKTTCARILARKINQPGYDDPNE 73 (367)
T ss_pred HHHHHCCCcH-----HhcCCcHHHHHHHHHHHHcCC--------CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCC
Confidence 4445555444 558999999999988887521 1235999999999999999999998854211
Q ss_pred --ceeEeeccccccccccccccCCCCCccccccCcchhHHHHh----CCCeEEEEeCccccCHHHHHHHHHHhhcCeeec
Q 003088 689 --SMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRR----RPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTD 762 (849)
Q Consensus 689 --~~i~i~~~~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~i~~----~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~ 762 (849)
++..++... .+..+......+.+.+.. ..+.||+|||+|.++...++.|++.+++
T Consensus 74 ~~~~~~~~l~~--------------~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~----- 134 (367)
T PRK14970 74 DFSFNIFELDA--------------ASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEE----- 134 (367)
T ss_pred CCCcceEEecc--------------ccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhC-----
Confidence 111111100 000111111111121111 2357999999999999999999999987
Q ss_pred CCCceeecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHH
Q 003088 763 SHGRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQ 842 (849)
Q Consensus 763 ~~g~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~ 842 (849)
...+++||++++.... +.+.+.+|+ .++.|.|++.++
T Consensus 135 ------~~~~~~~Il~~~~~~k------------------------------------l~~~l~sr~-~~v~~~~~~~~~ 171 (367)
T PRK14970 135 ------PPAHAIFILATTEKHK------------------------------------IIPTILSRC-QIFDFKRITIKD 171 (367)
T ss_pred ------CCCceEEEEEeCCccc------------------------------------CCHHHHhcc-eeEecCCccHHH
Confidence 2335678877763211 556777787 577888888777
Q ss_pred Hcccc
Q 003088 843 VCQLP 847 (849)
Q Consensus 843 ~~~I~ 847 (849)
+..++
T Consensus 172 l~~~l 176 (367)
T PRK14970 172 IKEHL 176 (367)
T ss_pred HHHHH
Confidence 66543
No 318
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.15 E-value=1.2e-10 Score=137.25 Aligned_cols=158 Identities=21% Similarity=0.400 Sum_probs=102.7
Q ss_pred ccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCC-----ceeEe-ecccccccc
Q 003088 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSES-----SMLRL-DMSEYMERH 702 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~-----~~i~i-~~~~~~~~~ 702 (849)
++|+||+.+++.|..++...+. ...+||+||+|+|||++|+.+|+.+.+... ++-.+ .|..+....
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~l--------~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~ 88 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNKL--------AHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQR 88 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC--------CeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCC
Confidence 5699999999999888875321 123899999999999999999998853210 11000 111111110
Q ss_pred c--cccccCCCCCccccccCcchhHHH---Hh----CCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCe
Q 003088 703 T--VSKLIGSPPGYVGYEEGGLLTEAI---RR----RPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNA 773 (849)
Q Consensus 703 ~--~~~l~g~~~g~vg~~~~~~l~~~i---~~----~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~ 773 (849)
. ...+-+. +..+.+ .+...+ .. ..+.|++|||+|.++...++.|++.||+ ...++
T Consensus 89 ~~n~~~ld~~--~~~~vd---~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEe-----------pp~~t 152 (614)
T PRK14971 89 SYNIHELDAA--SNNSVD---DIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEE-----------PPSYA 152 (614)
T ss_pred CCceEEeccc--ccCCHH---HHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhC-----------CCCCe
Confidence 0 0011111 111111 222222 22 2367999999999999999999999998 33578
Q ss_pred EEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHHHcccc
Q 003088 774 LIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQLP 847 (849)
Q Consensus 774 ~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~I~ 847 (849)
+||++++... .+.+.+.+|+ .++.|.|++.+++...+
T Consensus 153 ifIL~tt~~~------------------------------------kIl~tI~SRc-~iv~f~~ls~~ei~~~L 189 (614)
T PRK14971 153 IFILATTEKH------------------------------------KILPTILSRC-QIFDFNRIQVADIVNHL 189 (614)
T ss_pred EEEEEeCCch------------------------------------hchHHHHhhh-heeecCCCCHHHHHHHH
Confidence 8888776311 1667899999 78999999988876543
No 319
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=2.3e-10 Score=124.73 Aligned_cols=135 Identities=19% Similarity=0.259 Sum_probs=94.0
Q ss_pred CCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEc
Q 003088 310 TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFID 389 (849)
Q Consensus 310 ~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~~~~~~g~~e~~l~~l~~~~~~~~~~ILfID 389 (849)
-++.-|||||||||||+++.|+|+.+ +..++.+++..... ..+ ++.++.... +.+||+|+
T Consensus 234 wKRGYLLYGPPGTGKSS~IaAmAn~L----------~ydIydLeLt~v~~------n~d--Lr~LL~~t~--~kSIivIE 293 (457)
T KOG0743|consen 234 WKRGYLLYGPPGTGKSSFIAAMANYL----------NYDIYDLELTEVKL------DSD--LRHLLLATP--NKSILLIE 293 (457)
T ss_pred hhccceeeCCCCCCHHHHHHHHHhhc----------CCceEEeeeccccC------cHH--HHHHHHhCC--CCcEEEEe
Confidence 35789999999999999999999999 77888887765432 222 667666543 45799999
Q ss_pred CcchhhhCCCCCCCCCC------ccHH---HHHHHhhhhc--CCCeEEEEccChHHHHHHhhccHHHHh--ccc-cEEec
Q 003088 390 EVHTLIGSGTVGRGNKG------TGLD---ISNLLKPSLG--RGELQCIASTTQDEHRTQFEKDKALAR--RFQ-PVLIS 455 (849)
Q Consensus 390 Ei~~l~~~~~~~~~~~~------~~~~---~~~~L~~~le--~~~i~vI~at~~~~~~~~~~~d~al~~--Rf~-~i~~~ 455 (849)
|||.-+.........+. +... +.|.+..+-+ .+.-++|+|||..+ .+||||.| |.+ .|++.
T Consensus 294 DIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~E-----kLDPALlRpGRmDmhI~mg 368 (457)
T KOG0743|consen 294 DIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKE-----KLDPALLRPGRMDMHIYMG 368 (457)
T ss_pred ecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChh-----hcCHhhcCCCcceeEEEcC
Confidence 99988753222111000 1112 2233222222 23678999999998 99999999 888 69999
Q ss_pred CCCHHHHHHHHHHH
Q 003088 456 EPSQEDAVRILLGL 469 (849)
Q Consensus 456 ~ps~~e~~~iL~~~ 469 (849)
.-+.++-..+...+
T Consensus 369 yCtf~~fK~La~nY 382 (457)
T KOG0743|consen 369 YCTFEAFKTLASNY 382 (457)
T ss_pred CCCHHHHHHHHHHh
Confidence 99988776666543
No 320
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.13 E-value=5.4e-10 Score=107.07 Aligned_cols=150 Identities=29% Similarity=0.402 Sum_probs=98.0
Q ss_pred ccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccccccCCCC
Q 003088 633 GQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPP 712 (849)
Q Consensus 633 Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~ 712 (849)
|++..+..+...+... +..+++++||||||||++++.+++.+...+.+++.+++.............+.
T Consensus 2 ~~~~~~~~i~~~~~~~---------~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-- 70 (151)
T cd00009 2 GQEEAIEALREALELP---------PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGH-- 70 (151)
T ss_pred chHHHHHHHHHHHhCC---------CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhh--
Confidence 5566666665555431 11359999999999999999999988655677888888776543222111110
Q ss_pred CccccccCcchhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCchhhhcccCC
Q 003088 713 GYVGYEEGGLLTEAIRRRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKGRHG 792 (849)
Q Consensus 713 g~vg~~~~~~l~~~i~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~~~~~~ 792 (849)
...............++|+|||++.+.+.....+++.++...... ....++.+|+++|....
T Consensus 71 -----~~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~ii~~~~~~~~-------- 132 (151)
T cd00009 71 -----FLVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLR-----IDRENVRVIGATNRPLL-------- 132 (151)
T ss_pred -----hhHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCcee-----ccCCCeEEEEecCcccc--------
Confidence 000011112223456899999999998888899999998743110 11347889999987432
Q ss_pred ccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCC
Q 003088 793 SIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRS 837 (849)
Q Consensus 793 ~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~p 837 (849)
..+.+.+.+|++..+.++|
T Consensus 133 --------------------------~~~~~~~~~r~~~~i~~~~ 151 (151)
T cd00009 133 --------------------------GDLDRALYDRLDIRIVIPL 151 (151)
T ss_pred --------------------------CCcChhHHhhhccEeecCC
Confidence 0167889999988877765
No 321
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.13 E-value=1.6e-09 Score=133.52 Aligned_cols=181 Identities=20% Similarity=0.287 Sum_probs=123.3
Q ss_pred CCccccHHHHHHHHHHHhcC-------C--CCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhc-
Q 003088 290 DPVIGRETEIQRIIQILCRR-------T--KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA- 359 (849)
Q Consensus 290 ~~iiG~~~~i~~l~~~l~~~-------~--~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~- 359 (849)
..++|++..++.+...+.+. . ...+||+||+|||||++|++||+.+... +..++.+|++.+..
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~-------~~~~i~~d~s~~~~~ 637 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDD-------EDAMVRIDMSEYMEK 637 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCC-------CCcEEEEechhhccc
Confidence 36899999999999887542 1 2357999999999999999999988643 33555666554321
Q ss_pred -------cc--cccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCCC-------
Q 003088 360 -------GA--KERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGE------- 423 (849)
Q Consensus 360 -------~~--~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~~------- 423 (849)
|. .+.|--+ -..+.+.++..+..||||||++.+ ..++++.|+.+++.|.
T Consensus 638 ~~~~~l~g~~~g~~g~~~--~g~l~~~v~~~p~~vlllDeieka-------------~~~v~~~Ll~~l~~g~l~d~~g~ 702 (852)
T TIGR03346 638 HSVARLIGAPPGYVGYEE--GGQLTEAVRRKPYSVVLFDEVEKA-------------HPDVFNVLLQVLDDGRLTDGQGR 702 (852)
T ss_pred chHHHhcCCCCCccCccc--ccHHHHHHHcCCCcEEEEeccccC-------------CHHHHHHHHHHHhcCceecCCCe
Confidence 11 1111100 122334455566689999999988 5778999999997553
Q ss_pred ------eEEEEccChHH--HHH------------------HhhccHHHHhccc-cEEecCCCHHHHHHHHHHHHHHHHh-
Q 003088 424 ------LQCIASTTQDE--HRT------------------QFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEA- 475 (849)
Q Consensus 424 ------i~vI~at~~~~--~~~------------------~~~~d~al~~Rf~-~i~~~~ps~~e~~~iL~~~~~~~~~- 475 (849)
.++|+|||... +.. .-...|.|..|++ .+.|.+++.++..+|+.........
T Consensus 703 ~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l~~~ 782 (852)
T TIGR03346 703 TVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKR 782 (852)
T ss_pred EEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHHHHH
Confidence 35888888621 000 0112477888996 6889999999999999876653321
Q ss_pred --hc--CCccCHHHHHHHHHh
Q 003088 476 --HH--NCKFTLEAINAAVHL 492 (849)
Q Consensus 476 --~~--~~~i~~~~l~~~a~l 492 (849)
.. .+.++++++..++..
T Consensus 783 l~~~~~~l~i~~~a~~~L~~~ 803 (852)
T TIGR03346 783 LAERKITLELSDAALDFLAEA 803 (852)
T ss_pred HHHCCCeecCCHHHHHHHHHh
Confidence 22 367899999988774
No 322
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.12 E-value=2.8e-10 Score=125.54 Aligned_cols=145 Identities=27% Similarity=0.378 Sum_probs=96.4
Q ss_pred cccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCC---------------------
Q 003088 630 RVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSES--------------------- 688 (849)
Q Consensus 630 ~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~--------------------- 688 (849)
.++|++++...+......... .| ..+||+||||+|||++|.++|+.+++...
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~------~~-halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGR------LP-HALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHP 74 (325)
T ss_pred CcccchhHHHHHHHHHHhcCC------CC-ceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCC
Confidence 467777777777666664321 11 13999999999999999999999976442
Q ss_pred ceeEeeccccccccccccccCCCCCccccccCcchhHHHHh----CCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCC
Q 003088 689 SMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRR----RPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSH 764 (849)
Q Consensus 689 ~~i~i~~~~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~i~~----~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~ 764 (849)
.++.++.++..... +..+.-..+.+.... .+..|++|||+|.++++++|+|+..+|+
T Consensus 75 d~lel~~s~~~~~~------------i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~A~nallk~lEe------- 135 (325)
T COG0470 75 DFLELNPSDLRKID------------IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEE------- 135 (325)
T ss_pred ceEEecccccCCCc------------chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHHHHHHHHHHhcc-------
Confidence 22222222211100 011111112222211 3457999999999999999999999998
Q ss_pred CceeecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHH
Q 003088 765 GRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKA 841 (849)
Q Consensus 765 g~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~ 841 (849)
+..+++||++||.... +.|++.+|| ..+.|.|.+..
T Consensus 136 ----p~~~~~~il~~n~~~~------------------------------------il~tI~SRc-~~i~f~~~~~~ 171 (325)
T COG0470 136 ----PPKNTRFILITNDPSK------------------------------------ILPTIRSRC-QRIRFKPPSRL 171 (325)
T ss_pred ----CCCCeEEEEEcCChhh------------------------------------ccchhhhcc-eeeecCCchHH
Confidence 4468999999995322 567899999 88899885543
No 323
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.12 E-value=5e-11 Score=119.35 Aligned_cols=128 Identities=22% Similarity=0.289 Sum_probs=72.6
Q ss_pred CCCccccHHHHHHHHHHHhcCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeeh----hhhhcccccc
Q 003088 289 IDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM----GLLMAGAKER 364 (849)
Q Consensus 289 l~~iiG~~~~i~~l~~~l~~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~----~~~~~~~~~~ 364 (849)
|.+|+|++..++.+.-.... ..|+||+||||||||++|+.+...+..-.....+.-..++++.- ..+.....++
T Consensus 2 f~dI~GQe~aKrAL~iAAaG--~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~~~~~~~~~~~Pfr 79 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAAG--GHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGLGPDEGLIRQRPFR 79 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHHC--C--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---S---EEEE---EE
T ss_pred hhhhcCcHHHHHHHHHHHcC--CCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccCCCCCceecCCCcc
Confidence 78999999888888776654 46999999999999999999998775432222111111111100 0000000000
Q ss_pred ----chHHHHHHHHHH--------HHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCCC---------
Q 003088 365 ----GELEARVTTLIS--------EIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGE--------- 423 (849)
Q Consensus 365 ----g~~e~~l~~l~~--------~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~~--------- 423 (849)
.-. ...++. ++..+.++|||+||+..+ ...+.+.|+..++.+.
T Consensus 80 ~phhs~s---~~~liGgg~~~~PGeislAh~GVLflDE~~ef-------------~~~vld~Lr~ple~g~v~i~R~~~~ 143 (206)
T PF01078_consen 80 APHHSAS---EAALIGGGRPPRPGEISLAHRGVLFLDELNEF-------------DRSVLDALRQPLEDGEVTISRAGGS 143 (206)
T ss_dssp EE-TT-----HHHHHEEGGGEEE-CGGGGTTSEEEECETTTS--------------HHHHHHHHHHHHHSBEEEEETTEE
T ss_pred cCCCCcC---HHHHhCCCcCCCcCHHHHhcCCEEEechhhhc-------------CHHHHHHHHHHHHCCeEEEEECCce
Confidence 000 011111 223345679999999998 5778999999998764
Q ss_pred ------eEEEEccChHH
Q 003088 424 ------LQCIASTTQDE 434 (849)
Q Consensus 424 ------i~vI~at~~~~ 434 (849)
+.+|+|+|+-+
T Consensus 144 ~~~Pa~f~lv~a~NPcp 160 (206)
T PF01078_consen 144 VTYPARFLLVAAMNPCP 160 (206)
T ss_dssp EEEB--EEEEEEE-S--
T ss_pred EEEecccEEEEEecccc
Confidence 47899888653
No 324
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=99.12 E-value=1.3e-09 Score=118.17 Aligned_cols=180 Identities=15% Similarity=0.147 Sum_probs=117.6
Q ss_pred HHHHHHHHHHhcCCCCC-CeEeCCCCChHHHHHHHHHHHhhhCCCCcc--cc---------CCeEEEeehhhhhccccc-
Q 003088 297 TEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEVPVF--LL---------SKRIMSLDMGLLMAGAKE- 363 (849)
Q Consensus 297 ~~i~~l~~~l~~~~~~n-iLL~GppGtGKT~la~~la~~l~~~~~p~~--~~---------~~~~~~l~~~~~~~~~~~- 363 (849)
...+.+...+...+.+| +||+||+|+||+++|.++|+.+.+...... .. +-.++.++...-..+.+.
T Consensus 11 ~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~ 90 (319)
T PRK08769 11 RAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLR 90 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCccccccc
Confidence 35677777777777777 789999999999999999999876431110 00 011222210000001000
Q ss_pred cchHHHHHHHHHHHHHh----cCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCC--CeEEEEccChHHHHH
Q 003088 364 RGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG--ELQCIASTTQDEHRT 437 (849)
Q Consensus 364 ~g~~e~~l~~l~~~~~~----~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~--~i~vI~at~~~~~~~ 437 (849)
..-..+.++++.+.+.. ++..|++||++|.| +..++|.|++.||.+ +.++|.+|+..+
T Consensus 91 ~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m-------------~~~AaNaLLKtLEEPp~~~~fiL~~~~~~--- 154 (319)
T PRK08769 91 TEIVIEQVREISQKLALTPQYGIAQVVIVDPADAI-------------NRAACNALLKTLEEPSPGRYLWLISAQPA--- 154 (319)
T ss_pred ccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhh-------------CHHHHHHHHHHhhCCCCCCeEEEEECChh---
Confidence 11124456666655543 34579999999999 567899999999965 677777777766
Q ss_pred HhhccHHHHhccccEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhcccccCcchhhHHHHH
Q 003088 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLV 510 (849)
Q Consensus 438 ~~~~d~al~~Rf~~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~~~r~~p~~ai~ll 510 (849)
.+-|.++|||+.+.|+.|+.++..+.|.. . .+++.....++.++++ .|..|..++
T Consensus 155 --~lLpTIrSRCq~i~~~~~~~~~~~~~L~~--------~--~~~~~~a~~~~~l~~G------~p~~A~~~~ 209 (319)
T PRK08769 155 --RLPATIRSRCQRLEFKLPPAHEALAWLLA--------Q--GVSERAAQEALDAARG------HPGLAAQWL 209 (319)
T ss_pred --hCchHHHhhheEeeCCCcCHHHHHHHHHH--------c--CCChHHHHHHHHHcCC------CHHHHHHHh
Confidence 78899999999999999999988877742 1 2344444455566654 344555554
No 325
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=1e-09 Score=117.83 Aligned_cols=174 Identities=27% Similarity=0.359 Sum_probs=120.0
Q ss_pred CCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhccccccc-hHHHHHHHHHHHHH----hcCCe
Q 003088 310 TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERG-ELEARVTTLISEIQ----KSGDV 384 (849)
Q Consensus 310 ~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~~~~~~g-~~e~~l~~l~~~~~----~~~~~ 384 (849)
.+.|+||.||+|+|||.+|+.||+.+ +.++...|+..+.. +.|.| +.|..|.+++.++. +.+.+
T Consensus 225 eKSNvLllGPtGsGKTllaqTLAr~l----------dVPfaIcDcTtLTQ-AGYVGeDVEsvi~KLl~~A~~nVekAQqG 293 (564)
T KOG0745|consen 225 EKSNVLLLGPTGSGKTLLAQTLARVL----------DVPFAICDCTTLTQ-AGYVGEDVESVIQKLLQEAEYNVEKAQQG 293 (564)
T ss_pred ecccEEEECCCCCchhHHHHHHHHHh----------CCCeEEecccchhh-cccccccHHHHHHHHHHHccCCHHHHhcC
Confidence 57899999999999999999999998 66666677776653 33555 58888888888764 35567
Q ss_pred EEEEcCcchhhhCCCC-CCCCCCccHHHHHHHhhhhcC-----------------------CCeEEEEccChH-------
Q 003088 385 ILFIDEVHTLIGSGTV-GRGNKGTGLDISNLLKPSLGR-----------------------GELQCIASTTQD------- 433 (849)
Q Consensus 385 ILfIDEi~~l~~~~~~-~~~~~~~~~~~~~~L~~~le~-----------------------~~i~vI~at~~~------- 433 (849)
|+||||+|.+..+... ...-.-++.-+++.|+.++|. .+|.||+.+-..
T Consensus 294 IVflDEvDKi~~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~ 373 (564)
T KOG0745|consen 294 IVFLDEVDKITKKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIIS 373 (564)
T ss_pred eEEEehhhhhcccCccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHH
Confidence 9999999999732111 000012456688888888862 124555433110
Q ss_pred --------------------------------HHHH------------HhhccHHHHhccc-cEEecCCCHHHHHHHHHH
Q 003088 434 --------------------------------EHRT------------QFEKDKALARRFQ-PVLISEPSQEDAVRILLG 468 (849)
Q Consensus 434 --------------------------------~~~~------------~~~~d~al~~Rf~-~i~~~~ps~~e~~~iL~~ 468 (849)
.-+. .|.+-|.|.-||. .+.|..++.++++++|..
T Consensus 374 rR~~d~slGFg~~s~~~vr~~~~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfVGRfPVlVplh~L~~~~Lv~VLtE 453 (564)
T KOG0745|consen 374 RRLDDKSLGFGAPSSKGVRANMATKSGVENDAEKRDELLEKVESGDLISFGMIPEFVGRFPVLVPLHSLDEDQLVRVLTE 453 (564)
T ss_pred HhhcchhcccCCCCCccchhhcccccCcchhHHHHHHHHhhccccchhhhcCcHHHhcccceEeeccccCHHHHHHHHhc
Confidence 0000 1344577788998 589999999999999986
Q ss_pred ----HHHHHHhhc-----CCccCHHHHHHHHHhhh
Q 003088 469 ----LREKYEAHH-----NCKFTLEAINAAVHLSA 494 (849)
Q Consensus 469 ----~~~~~~~~~-----~~~i~~~~l~~~a~ls~ 494 (849)
+..+|.... .+.+++++++.+++++-
T Consensus 454 PknaL~~Qyk~lf~~~nV~L~fTe~Al~~IAq~Al 488 (564)
T KOG0745|consen 454 PKNALGKQYKKLFGMDNVELHFTEKALEAIAQLAL 488 (564)
T ss_pred chhhHHHHHHHHhccCCeeEEecHHHHHHHHHHHH
Confidence 444554332 35689999999988764
No 326
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.11 E-value=3.2e-10 Score=124.37 Aligned_cols=180 Identities=19% Similarity=0.251 Sum_probs=108.6
Q ss_pred ccccHHHHHHHHHHHhc--CCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhccc-------c
Q 003088 292 VIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGA-------K 362 (849)
Q Consensus 292 iiG~~~~i~~l~~~l~~--~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~~~-------~ 362 (849)
+||+...++.+.+.+.+ ....+|||+|++||||+++|++|....... +.+++.+||..+.... .
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~-------~~pfv~vnc~~~~~~~l~~~lfG~ 73 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSKRW-------QGPLVKLNCAALSENLLDSELFGH 73 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhcCcc-------CCCeEEEeCCCCChHHHHHHHhcc
Confidence 46777777777775533 456789999999999999999998765433 4566667765432100 0
Q ss_pred ccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCCC-------------eEEEEc
Q 003088 363 ERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGE-------------LQCIAS 429 (849)
Q Consensus 363 ~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~~-------------i~vI~a 429 (849)
..|.+......-...+....+++||||||+.| ..+.+..|..+++.+. +++|++
T Consensus 74 ~~g~~~ga~~~~~G~~~~a~gGtL~Ldei~~L-------------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~a 140 (329)
T TIGR02974 74 EAGAFTGAQKRHQGRFERADGGTLFLDELATA-------------SLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCA 140 (329)
T ss_pred ccccccCcccccCCchhhCCCCEEEeCChHhC-------------CHHHHHHHHHHHHcCcEEecCCCceeccceEEEEe
Confidence 00000000000000122344679999999999 5677888888886543 689999
Q ss_pred cChHHHH--HHhhccHHHHhcccc--EEecCCC--HHHHHHHHHHHHHHHHhhcC----CccCHHHHHHHHH
Q 003088 430 TTQDEHR--TQFEKDKALARRFQP--VLISEPS--QEDAVRILLGLREKYEAHHN----CKFTLEAINAAVH 491 (849)
Q Consensus 430 t~~~~~~--~~~~~d~al~~Rf~~--i~~~~ps--~~e~~~iL~~~~~~~~~~~~----~~i~~~~l~~~a~ 491 (849)
|+.+--. .--...+.|..||.. |.+|++. .+|...+++.++.++....+ ..++++++..+..
T Consensus 141 t~~~l~~~~~~g~fr~dL~~rl~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~ 212 (329)
T TIGR02974 141 TNADLPALAAEGRFRADLLDRLAFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLE 212 (329)
T ss_pred chhhHHHHhhcCchHHHHHHHhcchhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHh
Confidence 8865311 111234677889865 4554443 34555555555555443332 4688888876644
No 327
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.11 E-value=7.6e-10 Score=122.14 Aligned_cols=152 Identities=25% Similarity=0.321 Sum_probs=104.1
Q ss_pred CccccHHHHHHHHHHHhcCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhccccccchHHHH
Q 003088 291 PVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEAR 370 (849)
Q Consensus 291 ~iiG~~~~i~~l~~~l~~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~~~~~~g~~e~~ 370 (849)
.++|+++.+..+...+. ...+++|.||||||||++|+.+|+.+ +.+++.+.+...+....-.|.....
T Consensus 25 ~~~g~~~~~~~~l~a~~--~~~~vll~G~PG~gKT~la~~lA~~l----------~~~~~~i~~t~~l~p~d~~G~~~~~ 92 (329)
T COG0714 25 VVVGDEEVIELALLALL--AGGHVLLEGPPGVGKTLLARALARAL----------GLPFVRIQCTPDLLPSDLLGTYAYA 92 (329)
T ss_pred eeeccHHHHHHHHHHHH--cCCCEEEECCCCccHHHHHHHHHHHh----------CCCeEEEecCCCCCHHHhcCchhHh
Confidence 48888888888776654 34589999999999999999999999 5556666555433322222322111
Q ss_pred HHHH-HHH--HHhc---CC--eEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcC--------------CCeEEEE
Q 003088 371 VTTL-ISE--IQKS---GD--VILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--------------GELQCIA 428 (849)
Q Consensus 371 l~~l-~~~--~~~~---~~--~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~--------------~~i~vI~ 428 (849)
.... ... ...+ .. +|+|+|||+.. ..++++.|+..|+. ..+.+|+
T Consensus 93 ~~~~~~~~~~~~~gpl~~~~~~ill~DEInra-------------~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~via 159 (329)
T COG0714 93 ALLLEPGEFRFVPGPLFAAVRVILLLDEINRA-------------PPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIA 159 (329)
T ss_pred hhhccCCeEEEecCCcccccceEEEEeccccC-------------CHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEE
Confidence 1100 000 0000 01 49999999988 56788888888863 3457888
Q ss_pred ccChHHHHHHhhccHHHHhcc-ccEEecCC-CHHHHHHHHH
Q 003088 429 STTQDEHRTQFEKDKALARRF-QPVLISEP-SQEDAVRILL 467 (849)
Q Consensus 429 at~~~~~~~~~~~d~al~~Rf-~~i~~~~p-s~~e~~~iL~ 467 (849)
|+|+.+|.....+..++++|| -.+.++.| +.++...++.
T Consensus 160 T~Np~e~~g~~~l~eA~ldRf~~~~~v~yp~~~~e~~~i~~ 200 (329)
T COG0714 160 TQNPGEYEGTYPLPEALLDRFLLRIYVDYPDSEEEERIILA 200 (329)
T ss_pred ccCccccCCCcCCCHHHHhhEEEEEecCCCCchHHHHHHHH
Confidence 889888888788999999999 58999999 5554444443
No 328
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.10 E-value=3.2e-10 Score=135.17 Aligned_cols=128 Identities=23% Similarity=0.363 Sum_probs=93.2
Q ss_pred cceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccccccCCCCCcccccc--CcchhHHHHhCCCeEEEEe
Q 003088 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEE--GGLLTEAIRRRPFTLLLLD 738 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~vg~~~--~~~l~~~i~~~~~~vl~lD 738 (849)
+++|+||||||||++|++++..+ +.+|+.++++++... ++|... -..+....+...++|||||
T Consensus 187 gill~G~~G~GKt~~~~~~a~~~---~~~f~~is~~~~~~~------------~~g~~~~~~~~~f~~a~~~~P~IifID 251 (644)
T PRK10733 187 GVLMVGPPGTGKTLLAKAIAGEA---KVPFFTISGSDFVEM------------FVGVGASRVRDMFEQAKKAAPCIIFID 251 (644)
T ss_pred cEEEECCCCCCHHHHHHHHHHHc---CCCEEEEehHHhHHh------------hhcccHHHHHHHHHHHHhcCCcEEEeh
Confidence 49999999999999999999985 668999988876542 222221 1123333445566999999
Q ss_pred CccccCH--------------HHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCchhhhcccCCccccccccCCcc
Q 003088 739 EIEKAHP--------------DIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNEST 804 (849)
Q Consensus 739 Eid~l~~--------------~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~ 804 (849)
|+|.+.. .+.+.||..|+.-. ....++||+|||....
T Consensus 252 EiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~---------~~~~vivIaaTN~p~~-------------------- 302 (644)
T PRK10733 252 EIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFE---------GNEGIIVIAATNRPDV-------------------- 302 (644)
T ss_pred hHhhhhhccCCCCCCCchHHHHHHHHHHHhhhccc---------CCCCeeEEEecCChhh--------------------
Confidence 9998832 36778888887521 1236889999997321
Q ss_pred cHHhHHHHHHHHHHhhCChHHh--hccccEEEcCCCCHHHHccccC
Q 003088 805 SYAGMKTLVVEELKAYFRPELL--NRIDEVVVFRSLEKAQVCQLPL 848 (849)
Q Consensus 805 ~~~~~~~~~~~~l~~~~~pell--~R~d~~i~f~pl~~~~~~~I~~ 848 (849)
++|.++ .|||..|.|+.++.++..+|++
T Consensus 303 ----------------lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~ 332 (644)
T PRK10733 303 ----------------LDPALLRPGRFDRQVVVGLPDVRGREQILK 332 (644)
T ss_pred ----------------cCHHHhCCcccceEEEcCCCCHHHHHHHHH
Confidence 678888 4999999999999888888764
No 329
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=99.10 E-value=2.9e-10 Score=122.91 Aligned_cols=160 Identities=13% Similarity=0.154 Sum_probs=106.7
Q ss_pred cccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeecccc------ccccc
Q 003088 630 RVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEY------MERHT 703 (849)
Q Consensus 630 ~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~------~~~~~ 703 (849)
-..|+.+..+.+..++...+. ...+||+||.|+||+.+|+.+|+.+...+..- ..|... .....
T Consensus 4 ~yPWl~~~~~~l~~~~~~~rl--------~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~--~~Cg~C~sC~~~~~g~H 73 (319)
T PRK06090 4 DYPWLVPVWQNWKAGLDAGRI--------PGALLLQSDEGLGVESLVELFSRALLCQNYQS--EACGFCHSCELMQSGNH 73 (319)
T ss_pred CcccHHHHHHHHHHHHHcCCc--------ceeEeeECCCCCCHHHHHHHHHHHHcCCCCCC--CCCCCCHHHHHHHcCCC
Confidence 356788888888877765322 23499999999999999999999986543211 112211 11111
Q ss_pred cc-cccCCC--CCccccccCcchhHHHHhC----CCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEE
Q 003088 704 VS-KLIGSP--PGYVGYEEGGLLTEAIRRR----PFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIV 776 (849)
Q Consensus 704 ~~-~l~g~~--~g~vg~~~~~~l~~~i~~~----~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI 776 (849)
++ ..+... ...++.++...+.+.+... .+.|++||++|+|+..++|.||+.||+ +..+++||
T Consensus 74 PD~~~i~p~~~~~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEE-----------Pp~~t~fi 142 (319)
T PRK06090 74 PDLHVIKPEKEGKSITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEE-----------PAPNCLFL 142 (319)
T ss_pred CCEEEEecCcCCCcCCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcC-----------CCCCeEEE
Confidence 11 111110 1123333333333344333 367999999999999999999999999 55688999
Q ss_pred EecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHHHcccc
Q 003088 777 MTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQLP 847 (849)
Q Consensus 777 ~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~I~ 847 (849)
++|+.... +.|.+++|| ..+.|+|++.+++.+.+
T Consensus 143 L~t~~~~~------------------------------------lLpTI~SRC-q~~~~~~~~~~~~~~~L 176 (319)
T PRK06090 143 LVTHNQKR------------------------------------LLPTIVSRC-QQWVVTPPSTAQAMQWL 176 (319)
T ss_pred EEECChhh------------------------------------ChHHHHhcc-eeEeCCCCCHHHHHHHH
Confidence 98775321 678999999 79999999998876543
No 330
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.09 E-value=6.1e-10 Score=112.75 Aligned_cols=140 Identities=21% Similarity=0.274 Sum_probs=87.8
Q ss_pred ccceeecCCCCchHHHHHHHHHHhcCCC----Cce-eEeecccccccccc-ccccCCCCCccccccCcchhHHHHh----
Q 003088 660 AAMLFCGPTGVGKTELAKSLAACYFGSE----SSM-LRLDMSEYMERHTV-SKLIGSPPGYVGYEEGGLLTEAIRR---- 729 (849)
Q Consensus 660 ~~lL~~Gp~GtGKt~lA~~la~~l~~~~----~~~-i~i~~~~~~~~~~~-~~l~g~~~g~vg~~~~~~l~~~i~~---- 729 (849)
..+||+||+|+|||++|+.+++.+.+.. .++ ...+|..+...... ..++....+..+.+....+.+.+..
T Consensus 15 ~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~~~~~~ 94 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQVRELVEFLSRTPQE 94 (188)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHHHHHHHHHccCccc
Confidence 3499999999999999999999986531 111 00011111110000 0011110111222211122333333
Q ss_pred CCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhH
Q 003088 730 RPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGM 809 (849)
Q Consensus 730 ~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~ 809 (849)
..+.|++|||+|.++...++.|+..||+ ...+++||+++|.. .
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~-----------~~~~~~~il~~~~~-~------------------------- 137 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEE-----------PPPNTLFILITPSP-E------------------------- 137 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcC-----------CCCCeEEEEEECCh-H-------------------------
Confidence 3457999999999999999999999987 23477888887632 1
Q ss_pred HHHHHHHHHhhCChHHhhccccEEEcCCCCHHHHcccc
Q 003088 810 KTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQLP 847 (849)
Q Consensus 810 ~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~I~ 847 (849)
.+.+++.+|+ .++.|.|++.+++.+++
T Consensus 138 ----------~l~~~i~sr~-~~~~~~~~~~~~~~~~l 164 (188)
T TIGR00678 138 ----------KLLPTIRSRC-QVLPFPPLSEEALLQWL 164 (188)
T ss_pred ----------hChHHHHhhc-EEeeCCCCCHHHHHHHH
Confidence 1678899999 69999999999988765
No 331
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.09 E-value=2.6e-10 Score=134.20 Aligned_cols=142 Identities=21% Similarity=0.252 Sum_probs=96.4
Q ss_pred CccceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccccccCCCCCccccccC--cchhHHHHhCCCeEEE
Q 003088 659 TAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEG--GLLTEAIRRRPFTLLL 736 (849)
Q Consensus 659 ~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~vg~~~~--~~l~~~i~~~~~~vl~ 736 (849)
++++||.|+||||||++|+++|+.+.+ ..+|+.+.+.. +...++|.-.-+-....+ ..-.+.+.++.++|||
T Consensus 16 ~g~vLl~G~~GtgKs~lar~l~~~~~~-~~pfv~i~~~~-----t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~ 89 (589)
T TIGR02031 16 LGGVAIRARAGTGKTALARALAEILPP-IMPFVELPLGV-----TEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLY 89 (589)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhCCc-CCCeEecCccc-----chhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEe
Confidence 678999999999999999999998633 34688877531 233455531100000000 0011234456779999
Q ss_pred EeCccccCHHHHHHHHHHhhcCeeecC-CCceeec-CCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHH
Q 003088 737 LDEIEKAHPDIFNILLQVFEDGHLTDS-HGRRVSF-KNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVV 814 (849)
Q Consensus 737 lDEid~l~~~~~~~Ll~~le~g~~~~~-~g~~~~~-~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~ 814 (849)
||||+.+++.+|+.|+++|++|.++.. .|..... .++++|+|+|+... .
T Consensus 90 lDEi~rl~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~----~------------------------- 140 (589)
T TIGR02031 90 VDMANLLDDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEG----G------------------------- 140 (589)
T ss_pred ccchhhCCHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccc----c-------------------------
Confidence 999999999999999999999986543 2433343 48999999997420 1
Q ss_pred HHHHhhCChHHhhccccEEEcCCCC
Q 003088 815 EELKAYFRPELLNRIDEVVVFRSLE 839 (849)
Q Consensus 815 ~~l~~~~~pell~R~d~~i~f~pl~ 839 (849)
..|++.|++||+..|...++.
T Consensus 141 ----g~L~~~LldRf~l~v~~~~~~ 161 (589)
T TIGR02031 141 ----GGLPDHLLDRLALHVSLEDVA 161 (589)
T ss_pred ----CCCCHHHHHhccCeeecCCCC
Confidence 128899999999866655443
No 332
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.09 E-value=7.2e-10 Score=123.25 Aligned_cols=151 Identities=23% Similarity=0.294 Sum_probs=95.5
Q ss_pred CCCccccHHHHHHHHHHHhcCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEee----hhhhhcccccc
Q 003088 289 IDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD----MGLLMAGAKER 364 (849)
Q Consensus 289 l~~iiG~~~~i~~l~~~l~~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~----~~~~~~~~~~~ 364 (849)
++++++.++.++.+...+.. +.|++|+||||||||++|+.+|..+.....+. ....+.+. ...++.|.+..
T Consensus 174 l~d~~i~e~~le~l~~~L~~--~~~iil~GppGtGKT~lA~~la~~l~~~~~~~---~v~~VtFHpsySYeDFI~G~rP~ 248 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTI--KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQ---RVNMVQFHQSYSYEDFIQGYRPN 248 (459)
T ss_pred hhcccCCHHHHHHHHHHHhc--CCCEEEECCCCCCHHHHHHHHHHHhcCCcccc---eeeEEeecccccHHHHhcccCCC
Confidence 56788888899998888764 56999999999999999999999885322111 11122221 22333333221
Q ss_pred c-hH---HHHHHHHHHHHHh--cCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhc------------------
Q 003088 365 G-EL---EARVTTLISEIQK--SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG------------------ 420 (849)
Q Consensus 365 g-~~---e~~l~~l~~~~~~--~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le------------------ 420 (849)
+ .+ ...+.+++..++. .++.||||||+++--.+. +...+..+++
T Consensus 249 ~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~k------------iFGel~~lLE~~~rg~~~~v~l~y~e~d 316 (459)
T PRK11331 249 GVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSK------------VFGEVMMLMEHDKRGENWSVPLTYSEND 316 (459)
T ss_pred CCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHH------------hhhhhhhhccccccccccceeeeccccc
Confidence 1 01 1123344555554 357899999998763221 1111111111
Q ss_pred ------CCCeEEEEccChHHHHHHhhccHHHHhccccEEecCC
Q 003088 421 ------RGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEP 457 (849)
Q Consensus 421 ------~~~i~vI~at~~~~~~~~~~~d~al~~Rf~~i~~~~p 457 (849)
-.++.+|||+|..+ +....+|.||+|||..|++.+.
T Consensus 317 ~e~f~iP~Nl~IIgTMNt~D-rs~~~lD~AlrRRF~fi~i~p~ 358 (459)
T PRK11331 317 EERFYVPENVYIIGLMNTAD-RSLAVVDYALRRRFSFIDIEPG 358 (459)
T ss_pred cccccCCCCeEEEEecCccc-cchhhccHHHHhhhheEEecCC
Confidence 24589999999887 4556789999999999888863
No 333
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.09 E-value=2.4e-10 Score=124.93 Aligned_cols=138 Identities=18% Similarity=0.239 Sum_probs=90.4
Q ss_pred cceeecCCCCchHHHHHHHHHHhcCCC----CceeEe-eccccccccccccccCCCC---CccccccCcchhHHHHh---
Q 003088 661 AMLFCGPTGVGKTELAKSLAACYFGSE----SSMLRL-DMSEYMERHTVSKLIGSPP---GYVGYEEGGLLTEAIRR--- 729 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~l~~~~----~~~i~i-~~~~~~~~~~~~~l~g~~~---g~vg~~~~~~l~~~i~~--- 729 (849)
.+||+||+|+||+++|+.+|+.+.... .++-.+ .|..+.....++.++=.|. ..++.++...+.+.+..
T Consensus 24 a~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~~~~~ 103 (328)
T PRK05707 24 AYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFVVQTAQ 103 (328)
T ss_pred eeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHHhhccc
Confidence 499999999999999999999986532 111110 0111111111111100111 12333333334444433
Q ss_pred -CCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHh
Q 003088 730 -RPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAG 808 (849)
Q Consensus 730 -~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~ 808 (849)
.++.|++||++|+|+...+|.||+.||+ +..+++||++|+....
T Consensus 104 ~~~~kv~iI~~a~~m~~~aaNaLLK~LEE-----------Pp~~~~fiL~t~~~~~------------------------ 148 (328)
T PRK05707 104 LGGRKVVLIEPAEAMNRNAANALLKSLEE-----------PSGDTVLLLISHQPSR------------------------ 148 (328)
T ss_pred cCCCeEEEECChhhCCHHHHHHHHHHHhC-----------CCCCeEEEEEECChhh------------------------
Confidence 3367999999999999999999999998 3457888888876321
Q ss_pred HHHHHHHHHHhhCChHHhhccccEEEcCCCCHHHHccc
Q 003088 809 MKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQL 846 (849)
Q Consensus 809 ~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~I 846 (849)
+.|.+++|| ..+.|.|++.+++.+.
T Consensus 149 ------------ll~TI~SRc-~~~~~~~~~~~~~~~~ 173 (328)
T PRK05707 149 ------------LLPTIKSRC-QQQACPLPSNEESLQW 173 (328)
T ss_pred ------------CcHHHHhhc-eeeeCCCcCHHHHHHH
Confidence 679999999 7799999998887654
No 334
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.09 E-value=8.7e-10 Score=105.65 Aligned_cols=144 Identities=24% Similarity=0.349 Sum_probs=90.9
Q ss_pred cccHHHHHHHHHHHhcCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhccccccchHHHH-H
Q 003088 293 IGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEAR-V 371 (849)
Q Consensus 293 iG~~~~i~~l~~~l~~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~~~~~~g~~e~~-l 371 (849)
+|++..+..+...+......+++++||||+|||++++.+++.+... +..++.++................. .
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~~~~ 73 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRP-------GAPFLYLNASDLLEGLVVAELFGHFLV 73 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcC-------CCCeEEEehhhhhhhhHHHHHhhhhhH
Confidence 4778888999888887778899999999999999999999988532 4556666655443222111100000 0
Q ss_pred HHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhc----CCCeEEEEccChHHHHHHhhccHHHHh
Q 003088 372 TTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG----RGELQCIASTTQDEHRTQFEKDKALAR 447 (849)
Q Consensus 372 ~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le----~~~i~vI~at~~~~~~~~~~~d~al~~ 447 (849)
...........+.+|+|||++.+.. .........+..... ..++.+|++++.... ...++.+.+
T Consensus 74 ~~~~~~~~~~~~~~lilDe~~~~~~---------~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~---~~~~~~~~~ 141 (151)
T cd00009 74 RLLFELAEKAKPGVLFIDEIDSLSR---------GAQNALLRVLETLNDLRIDRENVRVIGATNRPLL---GDLDRALYD 141 (151)
T ss_pred hHHHHhhccCCCeEEEEeChhhhhH---------HHHHHHHHHHHhcCceeccCCCeEEEEecCcccc---CCcChhHHh
Confidence 1111122234578999999998821 012233344444332 367889998887652 356788899
Q ss_pred ccc-cEEec
Q 003088 448 RFQ-PVLIS 455 (849)
Q Consensus 448 Rf~-~i~~~ 455 (849)
||. .+.++
T Consensus 142 r~~~~i~~~ 150 (151)
T cd00009 142 RLDIRIVIP 150 (151)
T ss_pred hhccEeecC
Confidence 994 56554
No 335
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=99.09 E-value=2.9e-10 Score=124.53 Aligned_cols=160 Identities=13% Similarity=0.092 Sum_probs=105.7
Q ss_pred ccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCC----CceeEe-eccccccccccc
Q 003088 631 VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSE----SSMLRL-DMSEYMERHTVS 705 (849)
Q Consensus 631 i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~----~~~i~i-~~~~~~~~~~~~ 705 (849)
..|+....+++...+...+. ...+||+||+|+||+++|.++|+.+.+.+ .++-.+ +|..+...+.++
T Consensus 4 yPWl~~~~~~l~~~~~~~rl--------~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD 75 (334)
T PRK07993 4 YPWLRPDYEQLVGSYQAGRG--------HHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPD 75 (334)
T ss_pred CCCChHHHHHHHHHHHcCCc--------ceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCC
Confidence 46778888888777765432 23499999999999999999999986532 111111 011111111111
Q ss_pred cccCCCC---CccccccCcchhHHHHhC----CCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEe
Q 003088 706 KLIGSPP---GYVGYEEGGLLTEAIRRR----PFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMT 778 (849)
Q Consensus 706 ~l~g~~~---g~vg~~~~~~l~~~i~~~----~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~t 778 (849)
-.+=.|. ..++.++...+.+.+... .+.|++||++|+|+..+.|.||+.||+ +..+++||++
T Consensus 76 ~~~i~p~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEE-----------Pp~~t~fiL~ 144 (334)
T PRK07993 76 YYTLTPEKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEE-----------PPENTWFFLA 144 (334)
T ss_pred EEEEecccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcC-----------CCCCeEEEEE
Confidence 1111111 123333333344444433 357999999999999999999999999 4568889998
Q ss_pred cCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHHHccc
Q 003088 779 SNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQL 846 (849)
Q Consensus 779 sn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~I 846 (849)
|+.... +.|.+++|| ..+.|+|++.+++.+.
T Consensus 145 t~~~~~------------------------------------lLpTIrSRC-q~~~~~~~~~~~~~~~ 175 (334)
T PRK07993 145 CREPAR------------------------------------LLATLRSRC-RLHYLAPPPEQYALTW 175 (334)
T ss_pred ECChhh------------------------------------ChHHHHhcc-ccccCCCCCHHHHHHH
Confidence 875321 778999999 6789999998877653
No 336
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.08 E-value=3e-10 Score=133.64 Aligned_cols=186 Identities=20% Similarity=0.318 Sum_probs=119.2
Q ss_pred hhcCCCCccccHHHHHHHHHHHhc--CCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhc---
Q 003088 285 SEELIDPVIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA--- 359 (849)
Q Consensus 285 ~~~~l~~iiG~~~~i~~l~~~l~~--~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~--- 359 (849)
+.+.++.+||++..++++.+.+.+ ....+|||+|++|||||++|++|....... +.+++.+||..+..
T Consensus 191 ~~~~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~-------~~pfv~i~c~~~~~~~~ 263 (534)
T TIGR01817 191 RSGKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPRA-------KRPFVKVNCAALSETLL 263 (534)
T ss_pred ccCccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCCCC-------CCCeEEeecCCCCHHHH
Confidence 345788999999999998887643 456789999999999999999999876433 45667777654321
Q ss_pred -----cccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCC------------
Q 003088 360 -----GAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG------------ 422 (849)
Q Consensus 360 -----~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~------------ 422 (849)
|. ..|.+..........+....+++||||||+.| ..+.+..|..+++.+
T Consensus 264 ~~~lfg~-~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L-------------~~~~Q~~Ll~~l~~~~~~~~~~~~~~~ 329 (534)
T TIGR01817 264 ESELFGH-EKGAFTGAIAQRKGRFELADGGTLFLDEIGEI-------------SPAFQAKLLRVLQEGEFERVGGNRTLK 329 (534)
T ss_pred HHHHcCC-CCCccCCCCcCCCCcccccCCCeEEEechhhC-------------CHHHHHHHHHHHhcCcEEECCCCceEe
Confidence 10 00110000000000122234679999999999 566788888888654
Q ss_pred -CeEEEEccChHHHH--HHhhccHHHHhcccc--EEecCCC--HHHHHHHHHHHHHHHHhhcC--CccCHHHHHHHHH
Q 003088 423 -ELQCIASTTQDEHR--TQFEKDKALARRFQP--VLISEPS--QEDAVRILLGLREKYEAHHN--CKFTLEAINAAVH 491 (849)
Q Consensus 423 -~i~vI~at~~~~~~--~~~~~d~al~~Rf~~--i~~~~ps--~~e~~~iL~~~~~~~~~~~~--~~i~~~~l~~~a~ 491 (849)
++++|++|+.+-.. ..-...+.|..||.. |.+|++. .+|...++..++.++...++ +.++++++..+..
T Consensus 330 ~~~riI~~s~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~ 407 (534)
T TIGR01817 330 VDVRLVAATNRDLEEAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVLMS 407 (534)
T ss_pred ecEEEEEeCCCCHHHHHHcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHh
Confidence 37899988765311 111234667778875 5555553 45666666666665543332 6789998877654
No 337
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=99.07 E-value=3.1e-09 Score=116.55 Aligned_cols=177 Identities=15% Similarity=0.172 Sum_probs=117.6
Q ss_pred HHHHHHHHHHhcCCCCCC-eEeCCCCChHHHHHHHHHHHhhhCCCCc--ccc------------CCeEEEeehhhhhccc
Q 003088 297 TEIQRIIQILCRRTKNNP-ILLGESGVGKTAIAEGLAIRIVQAEVPV--FLL------------SKRIMSLDMGLLMAGA 361 (849)
Q Consensus 297 ~~i~~l~~~l~~~~~~ni-LL~GppGtGKT~la~~la~~l~~~~~p~--~~~------------~~~~~~l~~~~~~~~~ 361 (849)
..-+++.+.+...+.+|. ||+||+|+||+++|.++|+.+.+..... ... +-.++.+... .+.
T Consensus 9 ~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~---~~~ 85 (334)
T PRK07993 9 PDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPE---KGK 85 (334)
T ss_pred HHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecc---ccc
Confidence 345667777777666665 6999999999999999999997642211 010 1122222110 000
Q ss_pred cccchHHHHHHHHHHHHH----hcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcC--CCeEEEEccChHHH
Q 003088 362 KERGELEARVTTLISEIQ----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--GELQCIASTTQDEH 435 (849)
Q Consensus 362 ~~~g~~e~~l~~l~~~~~----~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~--~~i~vI~at~~~~~ 435 (849)
. .-..+.++.+.+.+. .++..|+|||++|.| ...++|.|++.||+ ++.++|..|...+
T Consensus 86 ~--~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m-------------~~~AaNaLLKtLEEPp~~t~fiL~t~~~~- 149 (334)
T PRK07993 86 S--SLGVDAVREVTEKLYEHARLGGAKVVWLPDAALL-------------TDAAANALLKTLEEPPENTWFFLACREPA- 149 (334)
T ss_pred c--cCCHHHHHHHHHHHhhccccCCceEEEEcchHhh-------------CHHHHHHHHHHhcCCCCCeEEEEEECChh-
Confidence 0 112334555555443 355679999999999 57789999999996 4577777777766
Q ss_pred HHHhhccHHHHhccccEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhcccccCcchhhHHHHHH
Q 003088 436 RTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVD 511 (849)
Q Consensus 436 ~~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~~~r~~p~~ai~ll~ 511 (849)
.+-|.++|||+.+.|++|+.++..+.|.. . ..++++....++.++++- |.+|+++++
T Consensus 150 ----~lLpTIrSRCq~~~~~~~~~~~~~~~L~~-------~--~~~~~~~a~~~~~la~G~------~~~Al~l~~ 206 (334)
T PRK07993 150 ----RLLATLRSRCRLHYLAPPPEQYALTWLSR-------E--VTMSQDALLAALRLSAGA------PGAALALLQ 206 (334)
T ss_pred ----hChHHHHhccccccCCCCCHHHHHHHHHH-------c--cCCCHHHHHHHHHHcCCC------HHHHHHHhc
Confidence 78899999999999999999988877742 1 135566566666776652 345555543
No 338
>PHA02244 ATPase-like protein
Probab=99.07 E-value=8.2e-10 Score=119.64 Aligned_cols=124 Identities=18% Similarity=0.279 Sum_probs=81.1
Q ss_pred CCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeeh--hhh-hccc-cccchHHHHHHHHHHHHHhcCCe
Q 003088 309 RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM--GLL-MAGA-KERGELEARVTTLISEIQKSGDV 384 (849)
Q Consensus 309 ~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~--~~~-~~~~-~~~g~~e~~l~~l~~~~~~~~~~ 384 (849)
....+++|+||||||||++|+++|+.+ +.+++.++. ..+ +.|. ...|.++ -..++..++ .+.
T Consensus 117 ~~~~PVLL~GppGtGKTtLA~aLA~~l----------g~pfv~In~l~d~~~L~G~i~~~g~~~--dgpLl~A~~--~Gg 182 (383)
T PHA02244 117 NANIPVFLKGGAGSGKNHIAEQIAEAL----------DLDFYFMNAIMDEFELKGFIDANGKFH--ETPFYEAFK--KGG 182 (383)
T ss_pred hcCCCEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEecChHHHhhccccccccccc--chHHHHHhh--cCC
Confidence 345689999999999999999999987 344444431 111 0110 1111111 123334343 346
Q ss_pred EEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhc-------------CCCeEEEEccChHH------HHHHhhccHHH
Q 003088 385 ILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG-------------RGELQCIASTTQDE------HRTQFEKDKAL 445 (849)
Q Consensus 385 ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le-------------~~~i~vI~at~~~~------~~~~~~~d~al 445 (849)
+|||||++.+ ..+++..|...++ ..++++|+|+|... |..-..+++++
T Consensus 183 vLiLDEId~a-------------~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~Al 249 (383)
T PHA02244 183 LFFIDEIDAS-------------IPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGAT 249 (383)
T ss_pred EEEEeCcCcC-------------CHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHH
Confidence 9999999988 3455666666664 35689999999732 21224789999
Q ss_pred HhccccEEecCCCH
Q 003088 446 ARRFQPVLISEPSQ 459 (849)
Q Consensus 446 ~~Rf~~i~~~~ps~ 459 (849)
++||..|+++.|+.
T Consensus 250 lDRFv~I~~dyp~~ 263 (383)
T PHA02244 250 LDRFAPIEFDYDEK 263 (383)
T ss_pred HhhcEEeeCCCCcH
Confidence 99999999999974
No 339
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=6.9e-11 Score=122.36 Aligned_cols=136 Identities=23% Similarity=0.357 Sum_probs=89.8
Q ss_pred ceeecCCCCchHHHHHHHHHHhc-C-----CCCceeEeeccccccccccccccCCCCCccccccCcchhHHHHhCC-CeE
Q 003088 662 MLFCGPTGVGKTELAKSLAACYF-G-----SESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRRRP-FTL 734 (849)
Q Consensus 662 lL~~Gp~GtGKt~lA~~la~~l~-~-----~~~~~i~i~~~~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~i~~~~-~~v 734 (849)
+|++||||||||.+++++|+.+. + ....++.+++..+-. +.|+.....|..- -+.+.+.+.... --.
T Consensus 180 iLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFS-----KWFsESgKlV~km-F~kI~ELv~d~~~lVf 253 (423)
T KOG0744|consen 180 ILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFS-----KWFSESGKLVAKM-FQKIQELVEDRGNLVF 253 (423)
T ss_pred EEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHH-----HHHhhhhhHHHHH-HHHHHHHHhCCCcEEE
Confidence 89999999999999999999871 1 123466666655533 3333221111100 011233333322 236
Q ss_pred EEEeCccccCH---------------HHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCchhhhcccCCccccccc
Q 003088 735 LLLDEIEKAHP---------------DIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLE 799 (849)
Q Consensus 735 l~lDEid~l~~---------------~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~ 799 (849)
|+|||++++.. .++|+||..||.=+ .++|+++++|||....
T Consensus 254 vLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK---------~~~NvliL~TSNl~~s--------------- 309 (423)
T KOG0744|consen 254 VLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLK---------RYPNVLILATSNLTDS--------------- 309 (423)
T ss_pred EEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhc---------cCCCEEEEeccchHHH---------------
Confidence 78999998732 38999999999732 4679999999997322
Q ss_pred cCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHHHccccC
Q 003088 800 DNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQLPL 848 (849)
Q Consensus 800 ~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~I~~ 848 (849)
++-+|++|-|.+....|++.+.+.+|++
T Consensus 310 ---------------------iD~AfVDRADi~~yVG~Pt~~ai~~Ilk 337 (423)
T KOG0744|consen 310 ---------------------IDVAFVDRADIVFYVGPPTAEAIYEILK 337 (423)
T ss_pred ---------------------HHHHhhhHhhheeecCCccHHHHHHHHH
Confidence 5677888888888888888777777653
No 340
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.07 E-value=4.1e-10 Score=117.43 Aligned_cols=144 Identities=17% Similarity=0.259 Sum_probs=95.9
Q ss_pred ccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccccccCCCC
Q 003088 633 GQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPP 712 (849)
Q Consensus 633 Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~ 712 (849)
+...+++.+...+.. ....+++|+||+|||||++|+++++.....+.+++.++|..+.... .
T Consensus 21 ~~~~~~~~l~~~~~~---------~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~--~------- 82 (226)
T TIGR03420 21 GNAELLAALRQLAAG---------KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQAD--P------- 82 (226)
T ss_pred CcHHHHHHHHHHHhc---------CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhH--H-------
Confidence 345566666555431 1123599999999999999999999886666778999998775421 0
Q ss_pred CccccccCcchhHHHHhCCCeEEEEeCccccCHH--HHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCchhhhccc
Q 003088 713 GYVGYEEGGLLTEAIRRRPFTLLLLDEIEKAHPD--IFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKGR 790 (849)
Q Consensus 713 g~vg~~~~~~l~~~i~~~~~~vl~lDEid~l~~~--~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~~~~ 790 (849)
.+...+. ...+|||||+|.++.. .++.|+.+++... ..+..+|+|++..+..+.
T Consensus 83 ---------~~~~~~~--~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~----------~~~~~iIits~~~~~~~~--- 138 (226)
T TIGR03420 83 ---------EVLEGLE--QADLVCLDDVEAIAGQPEWQEALFHLYNRVR----------EAGGRLLIAGRAAPAQLP--- 138 (226)
T ss_pred ---------HHHhhcc--cCCEEEEeChhhhcCChHHHHHHHHHHHHHH----------HcCCeEEEECCCChHHCC---
Confidence 0111111 2359999999999874 4888888886521 012367888886543211
Q ss_pred CCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccc--cEEEcCCCCHHHHcccc
Q 003088 791 HGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRID--EVVVFRSLEKAQVCQLP 847 (849)
Q Consensus 791 ~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d--~~i~f~pl~~~~~~~I~ 847 (849)
...+.|.+|+. ..|.++|++.+++..++
T Consensus 139 -----------------------------~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l 168 (226)
T TIGR03420 139 -----------------------------LRLPDLRTRLAWGLVFQLPPLSDEEKIAAL 168 (226)
T ss_pred -----------------------------cccHHHHHHHhcCeeEecCCCCHHHHHHHH
Confidence 02367888874 68889999988877664
No 341
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.06 E-value=9.4e-10 Score=119.33 Aligned_cols=150 Identities=23% Similarity=0.311 Sum_probs=96.8
Q ss_pred ccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcC----CCCceeEeec----ccccc
Q 003088 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFG----SESSMLRLDM----SEYME 700 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~----~~~~~i~i~~----~~~~~ 700 (849)
+.++|++++++++...++.+..|....++. ++|+||||+|||++|++|++.+-. ...++..+.. +.+.+
T Consensus 51 ~~~~G~~~~i~~lv~~l~~~a~g~~~~r~i---l~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~~sp~~e 127 (361)
T smart00763 51 HDFFGMEEAIERFVNYFKSAAQGLEERKQI---LYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGEESPMHE 127 (361)
T ss_pred hhccCcHHHHHHHHHHHHHHHhcCCCCCcE---EEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCCCCCCcc
Confidence 379999999999999998887776543332 899999999999999999998722 2335666654 21111
Q ss_pred c----------------ccc--------------ccc---c-CCC----------------------CCc---------c
Q 003088 701 R----------------HTV--------------SKL---I-GSP----------------------PGY---------V 715 (849)
Q Consensus 701 ~----------------~~~--------------~~l---~-g~~----------------------~g~---------v 715 (849)
. ..+ ..+ + |.. |+. +
T Consensus 128 ~Pl~l~p~~~r~~~~~~~~~~~~~~~~~l~p~c~~~l~~e~~gd~~~~~V~~~~~s~~~~~gi~~~~P~D~~~qdi~~L~ 207 (361)
T smart00763 128 DPLHLFPDELREDLEDEYGIPRRRLEGDLSPWCRKRLDEEYGGDIEKFEVVRVNFSELRRIGIGKFEPKDENNQDISELT 207 (361)
T ss_pred CCcccCCHHHHHHHHHHhCCChhhcCCCCCHHHHHHHHHHhCCCcceEEEEEecCCeecceEEEEECCCCCCcccHHHHh
Confidence 0 000 000 0 000 000 0
Q ss_pred c-----------cccCcc--hhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCC
Q 003088 716 G-----------YEEGGL--LTEAIRRRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNV 781 (849)
Q Consensus 716 g-----------~~~~~~--l~~~i~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~ 781 (849)
| .+.... +.+.+.++..|++-|+|+.+++.++++.||.++++|.+...++..-..-+.+||++||.
T Consensus 208 G~vd~~k~~~~~~~dp~a~~~~G~l~~aNrGi~~f~Ei~K~~~~~l~~LL~~~qE~~v~~~~~~~~~~~d~liia~sNe 286 (361)
T smart00763 208 GKVDIRKLEIYSESDPRAFSYDGALNRANRGILEFVEMFKADIKFLHPLLTATQEGNIKGTGGFAMIPIDGLIIAHSNE 286 (361)
T ss_pred cccCHHHhcccCCCCCeEEeccCccccccCceEEEeehhcCCHHHHHHHhhhhhcceEecCCcccccccceEEEEeCCH
Confidence 0 000000 11233345568999999999999999999999999999865432222346789999996
No 342
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.06 E-value=5.4e-10 Score=122.68 Aligned_cols=206 Identities=18% Similarity=0.258 Sum_probs=124.3
Q ss_pred CCCCccccHHHHHHHHHHHhc--CCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhccccc--
Q 003088 288 LIDPVIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKE-- 363 (849)
Q Consensus 288 ~l~~iiG~~~~i~~l~~~l~~--~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~~~~~-- 363 (849)
.++++||.+...+++.+.+.. +...++|++|++||||+.+|+.|...-... .+.+++.++|..+..+...
T Consensus 76 ~~~~LIG~~~~~~~~~eqik~~ap~~~~vLi~GetGtGKel~A~~iH~~s~r~------~~~PFI~~NCa~~~en~~~~e 149 (403)
T COG1221 76 ALDDLIGESPSLQELREQIKAYAPSGLPVLIIGETGTGKELFARLIHALSARR------AEAPFIAFNCAAYSENLQEAE 149 (403)
T ss_pred hhhhhhccCHHHHHHHHHHHhhCCCCCcEEEecCCCccHHHHHHHHHHhhhcc------cCCCEEEEEHHHhCcCHHHHH
Confidence 467899999999988887644 566789999999999999999999433221 2556777777665432211
Q ss_pred -----cchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCC-------------CeE
Q 003088 364 -----RGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-------------ELQ 425 (849)
Q Consensus 364 -----~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~-------------~i~ 425 (849)
.|.|......-...+...++++||+|||+.| ....+..|..+|+.| +++
T Consensus 150 LFG~~kGaftGa~~~k~Glfe~A~GGtLfLDEI~~L-------------P~~~Q~kLl~~le~g~~~rvG~~~~~~~dVR 216 (403)
T COG1221 150 LFGHEKGAFTGAQGGKAGLFEQANGGTLFLDEIHRL-------------PPEGQEKLLRVLEEGEYRRVGGSQPRPVDVR 216 (403)
T ss_pred HhccccceeecccCCcCchheecCCCEEehhhhhhC-------------CHhHHHHHHHHHHcCceEecCCCCCcCCCce
Confidence 0111111111111122345679999999999 456788888888753 368
Q ss_pred EEEccChHHHHHHhhccHHHHhcccc--EEecCC--CHHHHHHHHHHHHHHHHhhcCCccCH---HHHHHHHHhhhcccc
Q 003088 426 CIASTTQDEHRTQFEKDKALARRFQP--VLISEP--SQEDAVRILLGLREKYEAHHNCKFTL---EAINAAVHLSARYIS 498 (849)
Q Consensus 426 vI~at~~~~~~~~~~~d~al~~Rf~~--i~~~~p--s~~e~~~iL~~~~~~~~~~~~~~i~~---~~l~~~a~ls~~~~~ 498 (849)
+|+|||.+--...... ..|.+|... |.+|++ -.+|+..++..++..+....+..++. +++..+. .|-.
T Consensus 217 li~AT~~~l~~~~~~g-~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~----~y~~ 291 (403)
T COG1221 217 LICATTEDLEEAVLAG-ADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRALL----AYDW 291 (403)
T ss_pred eeeccccCHHHHHHhh-cchhhhhcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHH----hCCC
Confidence 9999997653332222 356665544 555555 34456666667777666666655443 3343332 2211
Q ss_pred cCcchhhHHHHHHHHhhHHH
Q 003088 499 DRYLPDKAIDLVDEAGSRAH 518 (849)
Q Consensus 499 ~r~~p~~ai~ll~~a~~~~~ 518 (849)
...-....++++.+|....
T Consensus 292 -pGNirELkN~Ve~~~~~~~ 310 (403)
T COG1221 292 -PGNIRELKNLVERAVAQAS 310 (403)
T ss_pred -CCcHHHHHHHHHHHHHHhc
Confidence 0111355566777766553
No 343
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=3.8e-10 Score=134.60 Aligned_cols=160 Identities=24% Similarity=0.365 Sum_probs=111.1
Q ss_pred ccccccHHHHHHHHHHHHH--------hhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCC--ceeEeecccc
Q 003088 629 KRVIGQDEAVAAISRAVKR--------SRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSES--SMLRLDMSEY 698 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~--------~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~--~~i~i~~~~~ 698 (849)
+.|-|.+.++.+++..+.. ...++.+|+ .+||+||||||||..|+++|...-..+. .|..-+.++.
T Consensus 265 d~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPr----gvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~ 340 (1080)
T KOG0732|consen 265 DSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPR----GVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADC 340 (1080)
T ss_pred cccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCc----ceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCchh
Confidence 5677888888888776632 223343333 3999999999999999999987633222 1222222222
Q ss_pred ccccccccccCCCCCccccccCc--chhHHHHhCCCeEEEEeCccccC-----------HHHHHHHHHHhhcCeeecCCC
Q 003088 699 MERHTVSKLIGSPPGYVGYEEGG--LLTEAIRRRPFTLLLLDEIEKAH-----------PDIFNILLQVFEDGHLTDSHG 765 (849)
Q Consensus 699 ~~~~~~~~l~g~~~g~vg~~~~~--~l~~~i~~~~~~vl~lDEid~l~-----------~~~~~~Ll~~le~g~~~~~~g 765 (849)
.. .|||+.+.+ .+++-.++..++|+||||||-++ ..+...||.+|+.- +
T Consensus 341 ls------------kwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGl---d--- 402 (1080)
T KOG0732|consen 341 LS------------KWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGL---D--- 402 (1080)
T ss_pred hc------------cccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCC---C---
Confidence 22 378887754 35555566678999999999554 35888899999761 1
Q ss_pred ceeecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHH--hhccccEEEcCCCCHHHH
Q 003088 766 RRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPEL--LNRIDEVVVFRSLEKAQV 843 (849)
Q Consensus 766 ~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pel--l~R~d~~i~f~pl~~~~~ 843 (849)
..+.+++|.+||.... ++|+| ..|||..+.|+-.+.++.
T Consensus 403 ---sRgqVvvigATnRpda------------------------------------~dpaLRRPgrfdref~f~lp~~~ar 443 (1080)
T KOG0732|consen 403 ---SRGQVVVIGATNRPDA------------------------------------IDPALRRPGRFDREFYFPLPDVDAR 443 (1080)
T ss_pred ---CCCceEEEcccCCccc------------------------------------cchhhcCCcccceeEeeeCCchHHH
Confidence 2347889999997532 67888 489999999999988888
Q ss_pred ccccCC
Q 003088 844 CQLPLI 849 (849)
Q Consensus 844 ~~I~~l 849 (849)
.+|++|
T Consensus 444 ~~Il~I 449 (1080)
T KOG0732|consen 444 AKILDI 449 (1080)
T ss_pred HHHHHH
Confidence 777654
No 344
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.06 E-value=7.6e-10 Score=115.61 Aligned_cols=121 Identities=16% Similarity=0.208 Sum_probs=87.0
Q ss_pred cceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccccccCCCCCccccccCcchhHHHHhCCCeEEEEeCc
Q 003088 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRRRPFTLLLLDEI 740 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~i~~~~~~vl~lDEi 740 (849)
+++|+||+|||||++|+++++.....+.+++.+++....... .. .....+|+|||+
T Consensus 44 ~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~~----------------------~~--~~~~~~liiDdi 99 (227)
T PRK08903 44 FFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLAF----------------------DF--DPEAELYAVDDV 99 (227)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHHH----------------------hh--cccCCEEEEeCh
Confidence 499999999999999999999886667788888887653210 00 112469999999
Q ss_pred cccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhh
Q 003088 741 EKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAY 820 (849)
Q Consensus 741 d~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~ 820 (849)
|.+++..+..|+.+++... .....++|++++..+... .
T Consensus 100 ~~l~~~~~~~L~~~~~~~~---------~~~~~~vl~~~~~~~~~~---------------------------------~ 137 (227)
T PRK08903 100 ERLDDAQQIALFNLFNRVR---------AHGQGALLVAGPAAPLAL---------------------------------P 137 (227)
T ss_pred hhcCchHHHHHHHHHHHHH---------HcCCcEEEEeCCCCHHhC---------------------------------C
Confidence 9999999999999996521 011334666766532110 1
Q ss_pred CChHHhhcc--ccEEEcCCCCHHHHcccc
Q 003088 821 FRPELLNRI--DEVVVFRSLEKAQVCQLP 847 (849)
Q Consensus 821 ~~pell~R~--d~~i~f~pl~~~~~~~I~ 847 (849)
+.++|++|+ ...+.++|++.++...++
T Consensus 138 l~~~L~sr~~~~~~i~l~pl~~~~~~~~l 166 (227)
T PRK08903 138 LREDLRTRLGWGLVYELKPLSDADKIAAL 166 (227)
T ss_pred CCHHHHHHHhcCeEEEecCCCHHHHHHHH
Confidence 568899998 468999999987655443
No 345
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.06 E-value=6.5e-10 Score=116.01 Aligned_cols=194 Identities=19% Similarity=0.281 Sum_probs=107.8
Q ss_pred ccccHHHHHHHHHHHhcCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCc-cccCCeEEEe-ehhhh------------
Q 003088 292 VIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPV-FLLSKRIMSL-DMGLL------------ 357 (849)
Q Consensus 292 iiG~~~~i~~l~~~l~~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~-~~~~~~~~~l-~~~~~------------ 357 (849)
++||+.+++.|.+++.......++|+||.|+|||++++.+...+...+... .......... ....+
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~ 80 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSE 80 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHH
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHH
Confidence 589999999999999887778899999999999999999999884432211 1111000000 00000
Q ss_pred -h----ccc-------cccchHHHHHHHHHHHHHhc-CCeEEEEcCcchhh-hCCCCCCCCCCccHHHHHHHh----hhh
Q 003088 358 -M----AGA-------KERGELEARVTTLISEIQKS-GDVILFIDEVHTLI-GSGTVGRGNKGTGLDISNLLK----PSL 419 (849)
Q Consensus 358 -~----~~~-------~~~g~~e~~l~~l~~~~~~~-~~~ILfIDEi~~l~-~~~~~~~~~~~~~~~~~~~L~----~~l 419 (849)
. .+. .........+..+++.+.+. .+.||+|||++.+. ... ........|. ...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~--------~~~~~~~~l~~~~~~~~ 152 (234)
T PF01637_consen 81 ALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASE--------EDKDFLKSLRSLLDSLL 152 (234)
T ss_dssp HHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTT--------TTHHHHHHHHHHHHH--
T ss_pred HHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhccc--------chHHHHHHHHHHHhhcc
Confidence 0 000 11234556677777777764 35999999999996 211 1233333333 333
Q ss_pred cCCCeEEEEccChHHHH-HHhhccHHHHhccccEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhcc
Q 003088 420 GRGELQCIASTTQDEHR-TQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496 (849)
Q Consensus 420 e~~~i~vI~at~~~~~~-~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~ 496 (849)
....+.+|.+++...+. .+......+..|+..+.+++.+.++..+++....... .++.++++.++.+..++.++
T Consensus 153 ~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~gG~ 227 (234)
T PF01637_consen 153 SQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL---IKLPFSDEDIEEIYSLTGGN 227 (234)
T ss_dssp --TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC---------HHHHHHHHHHHTT-
T ss_pred ccCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh---hcccCCHHHHHHHHHHhCCC
Confidence 45666666666554433 2233445566788789999999999999998866522 22245899999999998875
No 346
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.05 E-value=8e-10 Score=112.44 Aligned_cols=149 Identities=19% Similarity=0.320 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEe
Q 003088 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRL 693 (849)
Q Consensus 614 ~~~~~~~~~l~~~l~~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i 693 (849)
|.++++++.+. .+.++++....+...... .-..|++||||+|+||.+.+.++-+.+||.+.+=+.+
T Consensus 3 Wvdkyrpksl~-----~l~~~~e~~~~Lksl~~~---------~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki 68 (351)
T KOG2035|consen 3 WVDKYRPKSLD-----ELIYHEELANLLKSLSST---------GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKI 68 (351)
T ss_pred chhhcCcchhh-----hcccHHHHHHHHHHhccc---------CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheee
Confidence 44455554443 367777666665443321 1124799999999999999999999999988777777
Q ss_pred ecccccccc-------ccccc--cCCCCCccccccCcchhHHHH------------hCCCeEEEEeCccccCHHHHHHHH
Q 003088 694 DMSEYMERH-------TVSKL--IGSPPGYVGYEEGGLLTEAIR------------RRPFTLLLLDEIEKAHPDIFNILL 752 (849)
Q Consensus 694 ~~~~~~~~~-------~~~~l--~g~~~g~vg~~~~~~l~~~i~------------~~~~~vl~lDEid~l~~~~~~~Ll 752 (849)
+...+.... .++.. +.-.|+..|+..+-.+.+.++ +.++.|++|.|+|++..++|.+|.
T Consensus 69 ~~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dAQ~aLR 148 (351)
T KOG2035|consen 69 ETRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDAQHALR 148 (351)
T ss_pred eeEEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHHHHHHH
Confidence 766554321 11111 111244556555434444433 245689999999999999999999
Q ss_pred HHhhcCeeecCCCceeecCCeEEEEecCCCchhhh
Q 003088 753 QVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIA 787 (849)
Q Consensus 753 ~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~ 787 (849)
+.||. +..++++|+.+|.-+..+.
T Consensus 149 RTMEk-----------Ys~~~RlIl~cns~SriIe 172 (351)
T KOG2035|consen 149 RTMEK-----------YSSNCRLILVCNSTSRIIE 172 (351)
T ss_pred HHHHH-----------HhcCceEEEEecCcccchh
Confidence 99998 3468999999998665443
No 347
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.05 E-value=8.4e-10 Score=130.15 Aligned_cols=57 Identities=21% Similarity=0.258 Sum_probs=45.5
Q ss_pred HHHHhCCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCc------e----eecCCeEEEEecCC
Q 003088 725 EAIRRRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGR------R----VSFKNALIVMTSNV 781 (849)
Q Consensus 725 ~~i~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~------~----~~~~~~~iI~tsn~ 781 (849)
+++.++.+|+|||||++.+++.+|..|+++|+++++...++. . ....++++|+++|.
T Consensus 211 G~L~~AngGtL~Ldei~~L~~~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~ 277 (608)
T TIGR00764 211 GAIHRAHKGVLYIDEIKTMPLEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNL 277 (608)
T ss_pred CceEECCCCEEEEEChHhCCHHHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCH
Confidence 455577789999999999999999999999999988764431 1 11238999999996
No 348
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=99.05 E-value=7.7e-10 Score=120.82 Aligned_cols=157 Identities=17% Similarity=0.185 Sum_probs=98.3
Q ss_pred cccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCC-----CceeEee-ccccccc-ccc
Q 003088 632 IGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSE-----SSMLRLD-MSEYMER-HTV 704 (849)
Q Consensus 632 ~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~-----~~~i~i~-~~~~~~~-~~~ 704 (849)
.|+....+++... . .+-...+||+||+|+||+++|+.+|+.+.... .++-.+. |..+... |..
T Consensus 4 PW~~~~~~~l~~~--~--------~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD 73 (342)
T PRK06964 4 PWQTDDWNRLQAL--R--------ARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPD 73 (342)
T ss_pred cccHHHHHHHHHh--c--------CCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCC
Confidence 4566666665442 1 11223499999999999999999999885532 1111110 1111111 111
Q ss_pred ccccCCCC-----------------------------CccccccCcchhHHHHh----CCCeEEEEeCccccCHHHHHHH
Q 003088 705 SKLIGSPP-----------------------------GYVGYEEGGLLTEAIRR----RPFTLLLLDEIEKAHPDIFNIL 751 (849)
Q Consensus 705 ~~l~g~~~-----------------------------g~vg~~~~~~l~~~i~~----~~~~vl~lDEid~l~~~~~~~L 751 (849)
..++. |. ..++.++...+.+.+.. +.+.|++||++|+|+..+.|.|
T Consensus 74 ~~~i~-p~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaL 152 (342)
T PRK06964 74 YRIVR-PEALAAEAPGAADEAKEADADEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNVAAANAL 152 (342)
T ss_pred EEEEe-cccccccccccccccccchhhcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCHHHHHHH
Confidence 11111 11 11222222223333322 3357999999999999999999
Q ss_pred HHHhhcCeeecCCCceeecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhcccc
Q 003088 752 LQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDE 831 (849)
Q Consensus 752 l~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~ 831 (849)
|+.||+ +..+++||++|+.... +.|.+++|| .
T Consensus 153 LKtLEE-----------Pp~~t~fiL~t~~~~~------------------------------------LLpTI~SRc-q 184 (342)
T PRK06964 153 LKTLEE-----------PPPGTVFLLVSARIDR------------------------------------LLPTILSRC-R 184 (342)
T ss_pred HHHhcC-----------CCcCcEEEEEECChhh------------------------------------CcHHHHhcC-E
Confidence 999998 4568888887775321 789999999 8
Q ss_pred EEEcCCCCHHHHcccc
Q 003088 832 VVVFRSLEKAQVCQLP 847 (849)
Q Consensus 832 ~i~f~pl~~~~~~~I~ 847 (849)
.+.|+|++.+++.+.+
T Consensus 185 ~i~~~~~~~~~~~~~L 200 (342)
T PRK06964 185 QFPMTVPAPEAAAAWL 200 (342)
T ss_pred EEEecCCCHHHHHHHH
Confidence 9999999998887654
No 349
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.04 E-value=1.3e-09 Score=121.94 Aligned_cols=189 Identities=20% Similarity=0.307 Sum_probs=120.1
Q ss_pred CCCCccccHHHHHHHHHHHhc--CCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehh-hhhcccccc
Q 003088 288 LIDPVIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMG-LLMAGAKER 364 (849)
Q Consensus 288 ~l~~iiG~~~~i~~l~~~l~~--~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~-~~~~~~~~~ 364 (849)
...++||+...++++.+.+.+ ....+||++|++||||..+|++|.+.-.+.+-|+...+|.-+.-++- +.+.| ...
T Consensus 139 ~~~~liG~S~am~~l~~~i~kvA~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ESELFG-hek 217 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKVAPSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLESELFG-HEK 217 (464)
T ss_pred ccCCceecCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHHHHHhhc-ccc
Confidence 356899999999998887744 45678999999999999999999988766544444333333322211 11112 123
Q ss_pred chHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCC-------------CeEEEEccC
Q 003088 365 GELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-------------ELQCIASTT 431 (849)
Q Consensus 365 g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~-------------~i~vI~at~ 431 (849)
|.|....+.-...+....++.||||||..| ..++|.-|+.+|+.+ +++||+||+
T Consensus 218 GAFTGA~~~r~G~fE~A~GGTLfLDEI~~m-------------pl~~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT~ 284 (464)
T COG2204 218 GAFTGAITRRIGRFEQANGGTLFLDEIGEM-------------PLELQVKLLRVLQEREFERVGGNKPIKVDVRIIAATN 284 (464)
T ss_pred cCcCCcccccCcceeEcCCceEEeeccccC-------------CHHHHHHHHHHHHcCeeEecCCCcccceeeEEEeecC
Confidence 333333333233344456789999999999 688898998888743 368999998
Q ss_pred hHHHHHH--hhccHHHHhccccEEecCCCHHHHH----HHHHHHHHHHHhhc---CCccCHHHHHHHH
Q 003088 432 QDEHRTQ--FEKDKALARRFQPVLISEPSQEDAV----RILLGLREKYEAHH---NCKFTLEAINAAV 490 (849)
Q Consensus 432 ~~~~~~~--~~~d~al~~Rf~~i~~~~ps~~e~~----~iL~~~~~~~~~~~---~~~i~~~~l~~~a 490 (849)
.+-.... =..-..|.-|+.++.+..|.-.||. .+.+.+.+++.... -..++++++..+.
T Consensus 285 ~dL~~~v~~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~ 352 (464)
T COG2204 285 RDLEEEVAAGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAALL 352 (464)
T ss_pred cCHHHHHHcCCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHH
Confidence 7631110 0122455568887777766555444 44444555544433 3467888776553
No 350
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.04 E-value=2.9e-09 Score=126.88 Aligned_cols=160 Identities=21% Similarity=0.299 Sum_probs=103.1
Q ss_pred CCCccccHHHHHHHHHHHhcCCCCCCeEeCCCCChHHHHHHHHHHHhhhC----CC-----Ccc----------------
Q 003088 289 IDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQA----EV-----PVF---------------- 343 (849)
Q Consensus 289 l~~iiG~~~~i~~l~~~l~~~~~~niLL~GppGtGKT~la~~la~~l~~~----~~-----p~~---------------- 343 (849)
|..|+|++..+..+.-.+......++||.|++|||||++|++|+..+..- +. |..
T Consensus 3 f~~ivGq~~~~~al~~~av~~~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~~~~ 82 (633)
T TIGR02442 3 FTAIVGQEDLKLALLLNAVDPRIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYRPSE 82 (633)
T ss_pred cchhcChHHHHHHHHHHhhCCCCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhcccccc
Confidence 56899999988888777666666789999999999999999999887310 00 000
Q ss_pred ccCCeEEEeehhhhh---ccccccchHHHHHHH---HH--HHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHH
Q 003088 344 LLSKRIMSLDMGLLM---AGAKERGELEARVTT---LI--SEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLL 415 (849)
Q Consensus 344 ~~~~~~~~l~~~~~~---~~~~~~g~~e~~l~~---l~--~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L 415 (849)
....+++.+.++... .|.. +++..+.. .+ ..+....++||||||++.+ ....++.|
T Consensus 83 ~~~~pfv~~p~~~t~~~l~G~~---d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l-------------~~~~q~~L 146 (633)
T TIGR02442 83 QRPVPFVNLPLGATEDRVVGSL---DIERALREGEKAFQPGLLAEAHRGILYIDEVNLL-------------DDHLVDVL 146 (633)
T ss_pred cCCCCeeeCCCCCcHHHcCCcc---cHHHHhhcCCeeecCcceeecCCCeEEeChhhhC-------------CHHHHHHH
Confidence 012234443322211 1111 11111110 00 0111234569999999999 56778889
Q ss_pred hhhhcCCC---------------eEEEEccChHHHHHHhhccHHHHhccc-cEEecCC-CHHHHHHHHHH
Q 003088 416 KPSLGRGE---------------LQCIASTTQDEHRTQFEKDKALARRFQ-PVLISEP-SQEDAVRILLG 468 (849)
Q Consensus 416 ~~~le~~~---------------i~vI~at~~~~~~~~~~~d~al~~Rf~-~i~~~~p-s~~e~~~iL~~ 468 (849)
+..++.+. +.+|+++|+.+ -.+.++|..||. .|.++.+ +.+++.+++..
T Consensus 147 l~~le~g~~~v~r~g~~~~~~~~~~lIat~np~e----g~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~ 212 (633)
T TIGR02442 147 LDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEE----GDLRPQLLDRFGLCVDVAAPRDPEERVEIIRR 212 (633)
T ss_pred HHHHhcCCEEEEECCceeeecCCeEEEEecCCCC----CCCCHHHHhhcceEEEccCCCchHHHHHHHHH
Confidence 88887653 68899888654 257789999997 4777776 45777777764
No 351
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=4.9e-10 Score=123.26 Aligned_cols=131 Identities=24% Similarity=0.385 Sum_probs=88.9
Q ss_pred HhccccccHHHHHHHHHHHHHh------hcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeecccccc
Q 003088 627 LKKRVIGQDEAVAAISRAVKRS------RVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYME 700 (849)
Q Consensus 627 l~~~i~Gq~~~i~~l~~~l~~~------~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~ 700 (849)
..+.+.|.+.+.+.+...+... ..|++.|- ..+|+.||||+|||+++++||.+. ...|..+..+.+..
T Consensus 151 ~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~---rglLLfGPpgtGKtmL~~aiAsE~---~atff~iSassLts 224 (428)
T KOG0740|consen 151 GWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPV---RGLLLFGPPGTGKTMLAKAIATES---GATFFNISASSLTS 224 (428)
T ss_pred cccCCcchhhHHHHhhhhhhhcccchHhhhcccccc---chhheecCCCCchHHHHHHHHhhh---cceEeeccHHHhhh
Confidence 3466888888888887776542 33554443 359999999999999999999985 66688777776654
Q ss_pred ccccccccCCCCCccccccC--cchhHHHHhCCCeEEEEeCcccc-----------CHHHHHHHHHHhhcCeeecCCCce
Q 003088 701 RHTVSKLIGSPPGYVGYEEG--GLLTEAIRRRPFTLLLLDEIEKA-----------HPDIFNILLQVFEDGHLTDSHGRR 767 (849)
Q Consensus 701 ~~~~~~l~g~~~g~vg~~~~--~~l~~~i~~~~~~vl~lDEid~l-----------~~~~~~~Ll~~le~g~~~~~~g~~ 767 (849)
+ |+|..+. ..++...+...++|+||||||++ ++.....+|-.++... .
T Consensus 225 K------------~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~-------s 285 (428)
T KOG0740|consen 225 K------------YVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKN-------S 285 (428)
T ss_pred h------------ccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhcccc-------C
Confidence 3 7777642 22444456667899999999977 3334444444343321 1
Q ss_pred eecCCeEEEEecCCC
Q 003088 768 VSFKNALIVMTSNVG 782 (849)
Q Consensus 768 ~~~~~~~iI~tsn~~ 782 (849)
..-.++++|.|||.+
T Consensus 286 ~~~drvlvigaTN~P 300 (428)
T KOG0740|consen 286 APDDRVLVIGATNRP 300 (428)
T ss_pred CCCCeEEEEecCCCc
Confidence 112378899999985
No 352
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.03 E-value=2.9e-10 Score=112.62 Aligned_cols=112 Identities=26% Similarity=0.410 Sum_probs=73.4
Q ss_pred CCCCCeEeCCCCChHHHHHHHHHHHhh-hCCCCccccCCeEEEeehhhhhccccccchHHHHHHHHHHH----HHhcCCe
Q 003088 310 TKNNPILLGESGVGKTAIAEGLAIRIV-QAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE----IQKSGDV 384 (849)
Q Consensus 310 ~~~niLL~GppGtGKT~la~~la~~l~-~~~~p~~~~~~~~~~l~~~~~~~~~~~~g~~e~~l~~l~~~----~~~~~~~ 384 (849)
.+.+++|+||+|||||.+|++||+.+. .. ..+++.+|++.+..+. +.+..+..++.. +......
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~-------~~~~~~~d~s~~~~~~----~~~~~~~~l~~~~~~~v~~~~~g 70 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGS-------ERPLIRIDMSEYSEGD----DVESSVSKLLGSPPGYVGAEEGG 70 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SS-------CCEEEEEEGGGHCSHH----HCSCHCHHHHHHTTCHHHHHHHT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCC-------ccchHHHhhhcccccc----hHHhhhhhhhhcccceeeccchh
Confidence 456899999999999999999999994 22 4578888998876511 111111222111 1111223
Q ss_pred EEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCC-------------CeEEEEccChHH
Q 003088 385 ILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-------------ELQCIASTTQDE 434 (849)
Q Consensus 385 ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~-------------~i~vI~at~~~~ 434 (849)
|+||||||...+....+ ...++..+++.|+++++.| ++++|+|+|...
T Consensus 71 VVllDEidKa~~~~~~~--~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 71 VVLLDEIDKAHPSNSGG--ADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp EEEEETGGGCSHTTTTC--SHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred hhhhHHHhhcccccccc--chhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 99999999997742221 1134557899999999743 367899988654
No 353
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.03 E-value=1.2e-09 Score=119.87 Aligned_cols=178 Identities=17% Similarity=0.230 Sum_probs=111.1
Q ss_pred CCCccccHHHHHHHHHHHhc--CCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhccccccch
Q 003088 289 IDPVIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGE 366 (849)
Q Consensus 289 l~~iiG~~~~i~~l~~~l~~--~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~~~~~~g~ 366 (849)
++++||.+..++.+.+.+.+ ....+|+|+|++||||+++|++|...-... +.+++.+||..+.. ..
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~-------~~pfv~v~c~~~~~-----~~ 72 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSSRW-------QGPFISLNCAALNE-----NL 72 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhCCcc-------CCCeEEEeCCCCCH-----HH
Confidence 57899999999888887643 456789999999999999999998654332 44566666654321 01
Q ss_pred HHHHH------------HHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCC------------
Q 003088 367 LEARV------------TTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG------------ 422 (849)
Q Consensus 367 ~e~~l------------~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~------------ 422 (849)
++..+ ......+....+++|||||++.| ....+..|..+++.+
T Consensus 73 ~~~~lfg~~~~~~~g~~~~~~g~l~~a~gGtL~l~~i~~L-------------~~~~Q~~L~~~l~~~~~~~~g~~~~~~ 139 (326)
T PRK11608 73 LDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATA-------------PMLVQEKLLRVIEYGELERVGGSQPLQ 139 (326)
T ss_pred HHHHHccccccccCCcccccCCchhccCCCeEEeCChhhC-------------CHHHHHHHHHHHhcCcEEeCCCCceee
Confidence 11100 00001122344679999999999 566777777777643
Q ss_pred -CeEEEEccChHHHH--HHhhccHHHHhccccEEecCCCHH----HHHHHHHHHHHHHHhhcC----CccCHHHHHHHHH
Q 003088 423 -ELQCIASTTQDEHR--TQFEKDKALARRFQPVLISEPSQE----DAVRILLGLREKYEAHHN----CKFTLEAINAAVH 491 (849)
Q Consensus 423 -~i~vI~at~~~~~~--~~~~~d~al~~Rf~~i~~~~ps~~----e~~~iL~~~~~~~~~~~~----~~i~~~~l~~~a~ 491 (849)
++++|++|+.+--. ..-...+.|..||..+.|..|+-. |...++..+..++....+ ..++++++..+..
T Consensus 140 ~~~RiI~~s~~~l~~l~~~g~f~~dL~~~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L~~ 219 (326)
T PRK11608 140 VNVRLVCATNADLPAMVAEGKFRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLLN 219 (326)
T ss_pred ccEEEEEeCchhHHHHHHcCCchHHHHHhcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHh
Confidence 37889988765311 112344678889975455555444 444455555544433333 3578888776544
No 354
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.02 E-value=7.2e-10 Score=129.20 Aligned_cols=175 Identities=13% Similarity=0.200 Sum_probs=114.7
Q ss_pred hccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcC----C---CCceeEeecccccc
Q 003088 628 KKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFG----S---ESSMLRLDMSEYME 700 (849)
Q Consensus 628 ~~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~----~---~~~~i~i~~~~~~~ 700 (849)
-+.++|+++-++.|...+..+-.|.. |...++++|+||||||.+++.+.+.+.. . ...++.++|..+..
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsg----pnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lst 829 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSG----SNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVH 829 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCC----CCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCC
Confidence 47799999999999999987654422 2223569999999999999999877621 1 24578999976554
Q ss_pred ccccc-----cccCCCCCccccccCcchhHHHHh-----CCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeec
Q 003088 701 RHTVS-----KLIGSPPGYVGYEEGGLLTEAIRR-----RPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSF 770 (849)
Q Consensus 701 ~~~~~-----~l~g~~~g~vg~~~~~~l~~~i~~-----~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~ 770 (849)
...+. .|+|..+. .|......+...+.. ....||+|||||.+....++.|+++++.... ..
T Consensus 830 p~sIYqvI~qqL~g~~P~-~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~--------s~ 900 (1164)
T PTZ00112 830 PNAAYQVLYKQLFNKKPP-NALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTK--------IN 900 (1164)
T ss_pred HHHHHHHHHHHHcCCCCC-ccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhc--------cC
Confidence 43221 23344321 122111122222222 1235999999999988778888888875221 12
Q ss_pred CCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccc-cEEEcCCCCHHHHccccC
Q 003088 771 KNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRID-EVVVFRSLEKAQVCQLPL 848 (849)
Q Consensus 771 ~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d-~~i~f~pl~~~~~~~I~~ 848 (849)
..++||+++|.-. + ...+.|.+..||. ..+.|+||+.+++.+|++
T Consensus 901 SKLiLIGISNdlD--L-------------------------------perLdPRLRSRLg~eeIvF~PYTaEQL~dILk 946 (1164)
T PTZ00112 901 SKLVLIAISNTMD--L-------------------------------PERLIPRCRSRLAFGRLVFSPYKGDEIEKIIK 946 (1164)
T ss_pred CeEEEEEecCchh--c-------------------------------chhhhhhhhhccccccccCCCCCHHHHHHHHH
Confidence 3578889998420 0 0115677888885 358999999999999974
No 355
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=99.02 E-value=1.4e-09 Score=111.10 Aligned_cols=78 Identities=22% Similarity=0.391 Sum_probs=63.8
Q ss_pred eEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCchhhhccc--CCccccccccCCcccHHhHH
Q 003088 733 TLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKGR--HGSIGFLLEDNESTSYAGMK 810 (849)
Q Consensus 733 ~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~~~~--~~~~gf~~~~~~~~~~~~~~ 810 (849)
|||||||++.++-+.+..|.++||.. -..++|++||.|-..+.... ..+.|
T Consensus 298 GVLFIDEVhMLDiEcFTyL~kalES~------------iaPivifAsNrG~~~irGt~d~~sPhG--------------- 350 (456)
T KOG1942|consen 298 GVLFIDEVHMLDIECFTYLHKALESP------------IAPIVIFASNRGMCTIRGTEDILSPHG--------------- 350 (456)
T ss_pred cceEeeehhhhhhHHHHHHHHHhcCC------------CCceEEEecCCcceeecCCcCCCCCCC---------------
Confidence 79999999999999999999999972 25689999999866554211 11222
Q ss_pred HHHHHHHHhhCChHHhhccccEEEcCCCCHHHHccccC
Q 003088 811 TLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQLPL 848 (849)
Q Consensus 811 ~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~I~~ 848 (849)
++++|++|+ .+|.-.+++++++++|++
T Consensus 351 ----------ip~dllDRl-~Iirt~~y~~~e~r~Ii~ 377 (456)
T KOG1942|consen 351 ----------IPPDLLDRL-LIIRTLPYDEEEIRQIIK 377 (456)
T ss_pred ----------CCHHHhhhe-eEEeeccCCHHHHHHHHH
Confidence 789999999 999999999999999875
No 356
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.01 E-value=1.8e-09 Score=121.27 Aligned_cols=174 Identities=17% Similarity=0.247 Sum_probs=106.5
Q ss_pred ccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCC------CCceeEeecccccccc
Q 003088 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGS------ESSMLRLDMSEYMERH 702 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~------~~~~i~i~~~~~~~~~ 702 (849)
+.++|+++.++.|...+.....|.. ..+++++||||||||++++.+.+.+... ...++.++|.......
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~~~-----~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~ 89 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRGSR-----PSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLY 89 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCC-----CCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHH
Confidence 5689999999999999886543322 1359999999999999999999876321 1467888987654321
Q ss_pred cc-----cccc--CCCCCccccccCc---chhHHHHh-CCCeEEEEeCccccCH---HHHHHHHHHhhcCeeecCCCcee
Q 003088 703 TV-----SKLI--GSPPGYVGYEEGG---LLTEAIRR-RPFTLLLLDEIEKAHP---DIFNILLQVFEDGHLTDSHGRRV 768 (849)
Q Consensus 703 ~~-----~~l~--g~~~g~vg~~~~~---~l~~~i~~-~~~~vl~lDEid~l~~---~~~~~Ll~~le~g~~~~~~g~~~ 768 (849)
.. ..+. |......|..... .+.+.+.. ....||+|||+|.+.. +++..|++..+... .
T Consensus 90 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~--------~ 161 (365)
T TIGR02928 90 QVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGD--------L 161 (365)
T ss_pred HHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccC--------C
Confidence 11 1222 2211111211111 12233332 3457899999999943 33444443321111 1
Q ss_pred ecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccc-cEEEcCCCCHHHHcccc
Q 003088 769 SFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRID-EVVVFRSLEKAQVCQLP 847 (849)
Q Consensus 769 ~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d-~~i~f~pl~~~~~~~I~ 847 (849)
...++.+|+++|...- ...+.+.+.+||. ..+.|+|++.+++.+|+
T Consensus 162 ~~~~v~lI~i~n~~~~---------------------------------~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il 208 (365)
T TIGR02928 162 DNAKVGVIGISNDLKF---------------------------------RENLDPRVKSSLCEEEIIFPPYDAEELRDIL 208 (365)
T ss_pred CCCeEEEEEEECCcch---------------------------------HhhcCHHHhccCCcceeeeCCCCHHHHHHHH
Confidence 1246788888885311 0115677777884 67899999999998886
Q ss_pred C
Q 003088 848 L 848 (849)
Q Consensus 848 ~ 848 (849)
+
T Consensus 209 ~ 209 (365)
T TIGR02928 209 E 209 (365)
T ss_pred H
Confidence 3
No 357
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=99.01 E-value=7.9e-09 Score=105.67 Aligned_cols=112 Identities=18% Similarity=0.174 Sum_probs=83.4
Q ss_pred CeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCC-CeEEEEccChH--------HHHHHhhccHHHHhccccEE
Q 003088 383 DVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-ELQCIASTTQD--------EHRTQFEKDKALARRFQPVL 453 (849)
Q Consensus 383 ~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~-~i~vI~at~~~--------~~~~~~~~d~al~~Rf~~i~ 453 (849)
|+||||||+|.| +.+....|...|+.+ .-++|+|+|.- +...-+.+.+.|..|+-.|.
T Consensus 297 PGVLFIDEVhML-------------DiEcFTyL~kalES~iaPivifAsNrG~~~irGt~d~~sPhGip~dllDRl~Iir 363 (456)
T KOG1942|consen 297 PGVLFIDEVHML-------------DIECFTYLHKALESPIAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLDRLLIIR 363 (456)
T ss_pred CcceEeeehhhh-------------hhHHHHHHHHHhcCCCCceEEEecCCcceeecCCcCCCCCCCCCHHHhhheeEEe
Confidence 789999999999 678899999999865 34666666642 11112456789999999999
Q ss_pred ecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhcccccCcchhhHHHHHHHHhhH
Q 003088 454 ISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSR 516 (849)
Q Consensus 454 ~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~~~r~~p~~ai~ll~~a~~~ 516 (849)
.-+++.++..+|++...+ .+++.++++++..++.+..+.. -..++.++.-+.-.
T Consensus 364 t~~y~~~e~r~Ii~~Ra~----~E~l~~~e~a~~~l~~~gt~ts-----LRy~vqLl~p~~~~ 417 (456)
T KOG1942|consen 364 TLPYDEEEIRQIIKIRAQ----VEGLQVEEEALDLLAEIGTSTS-----LRYAVQLLTPASIL 417 (456)
T ss_pred eccCCHHHHHHHHHHHHh----hhcceecHHHHHHHHhhccchh-----HHHHHHhcCHHHHH
Confidence 999999999999988776 7789999999999888654321 13455555544333
No 358
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.00 E-value=1.1e-09 Score=120.34 Aligned_cols=188 Identities=20% Similarity=0.297 Sum_probs=118.0
Q ss_pred CCCCccccHHHHHHHHHHHhc--CCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehh-hhhcccccc
Q 003088 288 LIDPVIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMG-LLMAGAKER 364 (849)
Q Consensus 288 ~l~~iiG~~~~i~~l~~~l~~--~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~-~~~~~~~~~ 364 (849)
.+..+||+...+..+++.+.. +...+|||.|++||||..+|++|.+.-.+.+.|....||.-+.-++- +-+. ...+
T Consensus 221 ~~~~iIG~S~am~~ll~~i~~VA~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesLlESELF-GHeK 299 (550)
T COG3604 221 EVGGIIGRSPAMRQLLKEIEVVAKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESLLESELF-GHEK 299 (550)
T ss_pred ccccceecCHHHHHHHHHHHHHhcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchHHHHHHHh-cccc
Confidence 466899999999998886643 56678999999999999999999988766655544444433322211 1111 1234
Q ss_pred chHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCCC-------------eEEEEccC
Q 003088 365 GELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGE-------------LQCIASTT 431 (849)
Q Consensus 365 g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~~-------------i~vI~at~ 431 (849)
|.|...+..-...++-..++.||+|||..| ...+|.-|+.+|..+. +++|+|||
T Consensus 300 GAFTGA~~~r~GrFElAdGGTLFLDEIGel-------------PL~lQaKLLRvLQegEieRvG~~r~ikVDVRiIAATN 366 (550)
T COG3604 300 GAFTGAINTRRGRFELADGGTLFLDEIGEL-------------PLALQAKLLRVLQEGEIERVGGDRTIKVDVRVIAATN 366 (550)
T ss_pred cccccchhccCcceeecCCCeEechhhccC-------------CHHHHHHHHHHHhhcceeecCCCceeEEEEEEEeccc
Confidence 444444443333333355779999999999 6778888888886543 68999999
Q ss_pred hHHHHHHhhccHHHHh----ccccEEecCCCH----HHHHHHHHHHHHHHHhhc---CCccCHHHHHHHHH
Q 003088 432 QDEHRTQFEKDKALAR----RFQPVLISEPSQ----EDAVRILLGLREKYEAHH---NCKFTLEAINAAVH 491 (849)
Q Consensus 432 ~~~~~~~~~~d~al~~----Rf~~i~~~~ps~----~e~~~iL~~~~~~~~~~~---~~~i~~~~l~~~a~ 491 (849)
.+=... -.+..|+. |+.++.+..|.- +|..-+...+++++..+. .+.++.++++.+..
T Consensus 367 RDL~~~--V~~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~~ 435 (550)
T COG3604 367 RDLEEM--VRDGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLSS 435 (550)
T ss_pred hhHHHH--HHcCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHc
Confidence 863111 12233333 776544444433 333334444555544343 35788888876644
No 359
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=99.00 E-value=8.5e-09 Score=111.94 Aligned_cols=147 Identities=16% Similarity=0.182 Sum_probs=102.8
Q ss_pred HHHHHHHHHhcCCCCCC-eEeCCCCChHHHHHHHHHHHhhhCCCCc--ccc------------CCeEEEeehhhhhcccc
Q 003088 298 EIQRIIQILCRRTKNNP-ILLGESGVGKTAIAEGLAIRIVQAEVPV--FLL------------SKRIMSLDMGLLMAGAK 362 (849)
Q Consensus 298 ~i~~l~~~l~~~~~~ni-LL~GppGtGKT~la~~la~~l~~~~~p~--~~~------------~~~~~~l~~~~~~~~~~ 362 (849)
.-+.+...+.+.+.+|. ||+||+|+||+++|+.+|+.+.+.+... ... +-.++.+... .+ +
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~---~~-~ 85 (325)
T PRK06871 10 TYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPI---DN-K 85 (325)
T ss_pred HHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccc---cC-C
Confidence 45566777777666555 6899999999999999999997743211 111 1122222110 11 1
Q ss_pred ccchHHHHHHHHHHHHH----hcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCC--CeEEEEccChHHHH
Q 003088 363 ERGELEARVTTLISEIQ----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG--ELQCIASTTQDEHR 436 (849)
Q Consensus 363 ~~g~~e~~l~~l~~~~~----~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~--~i~vI~at~~~~~~ 436 (849)
.. -.+.++++.+.+. .++..|++||++|.| +..++|.|++.||++ ...+|.+|+..+
T Consensus 86 ~I--~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m-------------~~~AaNaLLKtLEEPp~~~~fiL~t~~~~-- 148 (325)
T PRK06871 86 DI--GVDQVREINEKVSQHAQQGGNKVVYIQGAERL-------------TEAAANALLKTLEEPRPNTYFLLQADLSA-- 148 (325)
T ss_pred CC--CHHHHHHHHHHHhhccccCCceEEEEechhhh-------------CHHHHHHHHHHhcCCCCCeEEEEEECChH--
Confidence 11 2344555555544 245579999999999 567899999999953 567777777666
Q ss_pred HHhhccHHHHhccccEEecCCCHHHHHHHHHH
Q 003088 437 TQFEKDKALARRFQPVLISEPSQEDAVRILLG 468 (849)
Q Consensus 437 ~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL~~ 468 (849)
.+-|.++|||+.+.|++|+.++..+.|..
T Consensus 149 ---~llpTI~SRC~~~~~~~~~~~~~~~~L~~ 177 (325)
T PRK06871 149 ---ALLPTIYSRCQTWLIHPPEEQQALDWLQA 177 (325)
T ss_pred ---hCchHHHhhceEEeCCCCCHHHHHHHHHH
Confidence 78899999999999999999998888764
No 360
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.00 E-value=4e-09 Score=124.43 Aligned_cols=122 Identities=21% Similarity=0.258 Sum_probs=85.4
Q ss_pred CCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCC-----------------------CeEEEEccChHHHHHH
Q 003088 382 GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-----------------------ELQCIASTTQDEHRTQ 438 (849)
Q Consensus 382 ~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~-----------------------~i~vI~at~~~~~~~~ 438 (849)
.+++|||||++.| ....+..|+.+|+.+ ++++|++++.+. .
T Consensus 217 ngGtL~Ldei~~L-------------~~~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~---l 280 (608)
T TIGR00764 217 HKGVLYIDEIKTM-------------PLEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLDD---L 280 (608)
T ss_pred CCCEEEEEChHhC-------------CHHHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHHH---H
Confidence 4579999999999 356777887777532 467899999874 3
Q ss_pred hhccHHHHhccc---c-EEec---CCCHHHHHHHHHHHHHHHHhh-cCCccCHHHHHHHHHhhhcccccCcc----hhhH
Q 003088 439 FEKDKALARRFQ---P-VLIS---EPSQEDAVRILLGLREKYEAH-HNCKFTLEAINAAVHLSARYISDRYL----PDKA 506 (849)
Q Consensus 439 ~~~d~al~~Rf~---~-i~~~---~ps~~e~~~iL~~~~~~~~~~-~~~~i~~~~l~~~a~ls~~~~~~r~~----p~~a 506 (849)
..+++.|++||. . +.|+ +.+.+.+.++++.+.+.+..+ ..-.++++++..+.+.+.|...++.. ....
T Consensus 281 ~~l~~~l~~rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R~ag~r~~lsl~~R~L 360 (608)
T TIGR00764 281 EGMHPALRSRIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQRRAGRKDHLTLRLREL 360 (608)
T ss_pred hhcCHHHHHHhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHHHhcccccCCCHHHH
Confidence 478999999998 2 4443 236777777777666655544 23468999999998877776555443 4566
Q ss_pred HHHHHHHhhHHHH
Q 003088 507 IDLVDEAGSRAHI 519 (849)
Q Consensus 507 i~ll~~a~~~~~~ 519 (849)
.+++.+|...++.
T Consensus 361 ~~llR~A~~iA~~ 373 (608)
T TIGR00764 361 GGLVRAAGDIAKS 373 (608)
T ss_pred HHHHHHHHHHHHh
Confidence 7888888655543
No 361
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.99 E-value=1.2e-08 Score=102.34 Aligned_cols=167 Identities=19% Similarity=0.293 Sum_probs=121.9
Q ss_pred CCCCccccHHHHHHHHH----HHhcCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhccccc
Q 003088 288 LIDPVIGRETEIQRIIQ----ILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKE 363 (849)
Q Consensus 288 ~l~~iiG~~~~i~~l~~----~l~~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~~~~~ 363 (849)
.+.+++|.+.+.+.+.+ ++.....+|+||+|.-||||+++++++..++... +.++++++-..+.
T Consensus 58 ~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~-------glrLVEV~k~dl~----- 125 (287)
T COG2607 58 DLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADE-------GLRLVEVDKEDLA----- 125 (287)
T ss_pred CHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhc-------CCeEEEEcHHHHh-----
Confidence 35578999988877765 4455677999999999999999999999998664 6778888755543
Q ss_pred cchHHHHHHHHHHHHHhc-CCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcC------CCeEEEEccChHHHH
Q 003088 364 RGELEARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR------GELQCIASTTQDEHR 436 (849)
Q Consensus 364 ~g~~e~~l~~l~~~~~~~-~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~------~~i~vI~at~~~~~~ 436 (849)
.+-.+++.++.. .+.|||+|++-.= .+.+....||.+|+. .++.+.+|+|.....
T Consensus 126 ------~Lp~l~~~Lr~~~~kFIlFcDDLSFe------------~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRRHLl 187 (287)
T COG2607 126 ------TLPDLVELLRARPEKFILFCDDLSFE------------EGDDAYKALKSALEGGVEGRPANVLFYATSNRRHLL 187 (287)
T ss_pred ------hHHHHHHHHhcCCceEEEEecCCCCC------------CCchHHHHHHHHhcCCcccCCCeEEEEEecCCcccc
Confidence 155677777653 5789999987532 244567888888874 347777777753221
Q ss_pred H-Hh--------hcc--------HHHHhccc-cEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHH
Q 003088 437 T-QF--------EKD--------KALARRFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINA 488 (849)
Q Consensus 437 ~-~~--------~~d--------~al~~Rf~-~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~ 488 (849)
+ ++ +++ -+|..||. .+.|.+++.++..+|+..+++ +.++.++++.+..
T Consensus 188 ~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~----~~~l~~~~e~l~~ 253 (287)
T COG2607 188 PEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAK----HFGLDISDEELHA 253 (287)
T ss_pred cHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHH----HcCCCCCHHHHHH
Confidence 1 00 111 13455997 699999999999999988887 7788998876654
No 362
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=3.3e-10 Score=123.92 Aligned_cols=129 Identities=24% Similarity=0.402 Sum_probs=89.3
Q ss_pred ceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccccccCCCCCccccccCc---chhHHHHh----C---C
Q 003088 662 MLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGG---LLTEAIRR----R---P 731 (849)
Q Consensus 662 lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~vg~~~~~---~l~~~i~~----~---~ 731 (849)
+|||||||||||.+||.|.+.+...+. -.++.+++.++ |||++|.. .|.++-.+ . .
T Consensus 259 iLLyGPPGTGKTLiARqIGkMLNAreP--KIVNGPeIL~K------------YVGeSE~NvR~LFaDAEeE~r~~g~~Sg 324 (744)
T KOG0741|consen 259 ILLYGPPGTGKTLIARQIGKMLNAREP--KIVNGPEILNK------------YVGESEENVRKLFADAEEEQRRLGANSG 324 (744)
T ss_pred EEEECCCCCChhHHHHHHHHHhcCCCC--cccCcHHHHHH------------hhcccHHHHHHHHHhHHHHHHhhCccCC
Confidence 999999999999999999999854332 33577777663 78877743 23333221 1 1
Q ss_pred CeEEEEeCcccc-------------CHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCchhhhcccCCcccccc
Q 003088 732 FTLLLLDEIEKA-------------HPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLL 798 (849)
Q Consensus 732 ~~vl~lDEid~l-------------~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~ 798 (849)
--|++|||||.. +..++|+||.-||.-. ...|+.+|.-||..
T Consensus 325 LHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVe---------qLNNILVIGMTNR~---------------- 379 (744)
T KOG0741|consen 325 LHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVE---------QLNNILVIGMTNRK---------------- 379 (744)
T ss_pred ceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHH---------hhhcEEEEeccCch----------------
Confidence 249999999966 5679999999998621 34589999988862
Q ss_pred ccCCcccHHhHHHHHHHHHHhhCChHHh--hccccEEEcCCCCHHHHccccCC
Q 003088 799 EDNESTSYAGMKTLVVEELKAYFRPELL--NRIDEVVVFRSLEKAQVCQLPLI 849 (849)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~l~~~~~pell--~R~d~~i~f~pl~~~~~~~I~~l 849 (849)
..++.+|+ .||-..+...-++++-..+|+++
T Consensus 380 --------------------DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~I 412 (744)
T KOG0741|consen 380 --------------------DLIDEALLRPGRLEVQMEISLPDEKGRLQILKI 412 (744)
T ss_pred --------------------hhHHHHhcCCCceEEEEEEeCCCccCceEEEEh
Confidence 11344444 67766666666666666666543
No 363
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.98 E-value=4.9e-09 Score=126.91 Aligned_cols=185 Identities=20% Similarity=0.324 Sum_probs=113.3
Q ss_pred cCCCCccccHHHHHHHHHHHhc--CCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhcc----
Q 003088 287 ELIDPVIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAG---- 360 (849)
Q Consensus 287 ~~l~~iiG~~~~i~~l~~~l~~--~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~~---- 360 (849)
..+++++|+...++.+.+.+.. ....+|+|+|++|||||++|++|....... +.+++.+||..+..+
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~-------~~~~v~i~c~~~~~~~~~~ 445 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRN-------NRRMVKMNCAAMPAGLLES 445 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCCC-------CCCeEEEecccCChhHhhh
Confidence 3577999999999998776543 455689999999999999999999876433 445666665543210
Q ss_pred ---ccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCC-------------Ce
Q 003088 361 ---AKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-------------EL 424 (849)
Q Consensus 361 ---~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~-------------~i 424 (849)
....|.+..........+....+++||||||+.+ ..+++..|..+++.+ ++
T Consensus 446 ~lfg~~~~~~~g~~~~~~g~le~a~~GtL~Ldei~~L-------------~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~ 512 (686)
T PRK15429 446 DLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDM-------------PLELQPKLLRVLQEQEFERLGSNKIIQTDV 512 (686)
T ss_pred hhcCcccccccccccchhhHHHhcCCCeEEEechhhC-------------CHHHHHHHHHHHHhCCEEeCCCCCcccceE
Confidence 0001111110111111223344679999999999 566777777777543 46
Q ss_pred EEEEccChHHHH--HHhhccHHHHhccccEEecCCCHHHHHH----HHHHHHHHHHhhcC--C-ccCHHHHHHHHH
Q 003088 425 QCIASTTQDEHR--TQFEKDKALARRFQPVLISEPSQEDAVR----ILLGLREKYEAHHN--C-KFTLEAINAAVH 491 (849)
Q Consensus 425 ~vI~at~~~~~~--~~~~~d~al~~Rf~~i~~~~ps~~e~~~----iL~~~~~~~~~~~~--~-~i~~~~l~~~a~ 491 (849)
++|++|+.+-.. ..-.....|..|+..+.|..|+-.+|.+ +++.+..++...++ + .++++++..+..
T Consensus 513 RiI~~t~~~l~~~~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~L~~ 588 (686)
T PRK15429 513 RLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLSN 588 (686)
T ss_pred EEEEeCCCCHHHHHHcCcccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHh
Confidence 899999875311 1112334566688766666665555544 44445554443333 2 478888776543
No 364
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.98 E-value=2.5e-08 Score=106.91 Aligned_cols=171 Identities=18% Similarity=0.241 Sum_probs=101.1
Q ss_pred CCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEE--eehhhh---h---ccccccc----hHHHHHHHHHH
Q 003088 309 RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMS--LDMGLL---M---AGAKERG----ELEARVTTLIS 376 (849)
Q Consensus 309 ~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~--l~~~~~---~---~~~~~~g----~~e~~l~~l~~ 376 (849)
.....++|+||+|+|||++++.++..+....+.. +.+.. .+...+ + .|....+ .....+...+.
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~----~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~ 116 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRLDQERVVA----AKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLI 116 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEE----eeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Confidence 3445689999999999999999998875332111 00110 111111 0 1111111 11222333222
Q ss_pred -HHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhc-----CCCeEEEEccChHHHHHHhhc--cHHHHhc
Q 003088 377 -EIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG-----RGELQCIASTTQDEHRTQFEK--DKALARR 448 (849)
Q Consensus 377 -~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le-----~~~i~vI~at~~~~~~~~~~~--d~al~~R 448 (849)
....+.+.+|+|||+|.+. .+..+.|+.+.+ ...+.+|.++.+. +...+.. ...+.+|
T Consensus 117 ~~~~~~~~~vliiDe~~~l~-------------~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r 182 (269)
T TIGR03015 117 EQFAAGKRALLVVDEAQNLT-------------PELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQR 182 (269)
T ss_pred HHHhCCCCeEEEEECcccCC-------------HHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhh
Confidence 2334567899999999982 223344433222 1234556665553 3332221 2457778
Q ss_pred cc-cEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhccc
Q 003088 449 FQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497 (849)
Q Consensus 449 f~-~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~ 497 (849)
+. .+.+++++.+|..+++..............+++++++.+++.+.++.
T Consensus 183 ~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p 232 (269)
T TIGR03015 183 IIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIP 232 (269)
T ss_pred eeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcc
Confidence 65 79999999999999998887755333345789999999999998853
No 365
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.98 E-value=5.7e-09 Score=103.10 Aligned_cols=139 Identities=23% Similarity=0.350 Sum_probs=83.8
Q ss_pred ccccHHHHHHHHHHHhc--CCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhc--------cc
Q 003088 292 VIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA--------GA 361 (849)
Q Consensus 292 iiG~~~~i~~l~~~l~~--~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~--------~~ 361 (849)
+||.+..++++.+.+.+ ....+|||+|++||||+.+|++|....... +.+++.+||..+.. |.
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~-------~~pfi~vnc~~~~~~~~e~~LFG~ 73 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNSPRK-------NGPFISVNCAALPEELLESELFGH 73 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCSTTT-------TS-EEEEETTTS-HHHHHHHHHEB
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhhcc-------cCCeEEEehhhhhcchhhhhhhcc
Confidence 57888888888886644 556899999999999999999999855433 56677777765421 11
Q ss_pred cccchHH---HHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCC-------------CeE
Q 003088 362 KERGELE---ARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-------------ELQ 425 (849)
Q Consensus 362 ~~~g~~e---~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~-------------~i~ 425 (849)
. .|.+. ..-..+ +....+++||||||+.| ..++|..|..+|+.+ +++
T Consensus 74 ~-~~~~~~~~~~~~G~---l~~A~~GtL~Ld~I~~L-------------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~R 136 (168)
T PF00158_consen 74 E-KGAFTGARSDKKGL---LEQANGGTLFLDEIEDL-------------PPELQAKLLRVLEEGKFTRLGSDKPVPVDVR 136 (168)
T ss_dssp C-SSSSTTTSSEBEHH---HHHTTTSEEEEETGGGS--------------HHHHHHHHHHHHHSEEECCTSSSEEE--EE
T ss_pred c-cccccccccccCCc---eeeccceEEeecchhhh-------------HHHHHHHHHHHHhhchhccccccccccccce
Confidence 0 00000 000122 23345679999999999 577888888888732 478
Q ss_pred EEEccChHH--HHHHhhccHHHHhccccEEe
Q 003088 426 CIASTTQDE--HRTQFEKDKALARRFQPVLI 454 (849)
Q Consensus 426 vI~at~~~~--~~~~~~~d~al~~Rf~~i~~ 454 (849)
+|++|+.+- +...-...+.|.-|+..+.+
T Consensus 137 iI~st~~~l~~~v~~g~fr~dLy~rL~~~~i 167 (168)
T PF00158_consen 137 IIASTSKDLEELVEQGRFREDLYYRLNVFTI 167 (168)
T ss_dssp EEEEESS-HHHHHHTTSS-HHHHHHHTTEEE
T ss_pred EEeecCcCHHHHHHcCCChHHHHHHhceEec
Confidence 999998652 11111223455555554443
No 366
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.97 E-value=1.7e-09 Score=126.94 Aligned_cols=58 Identities=17% Similarity=0.216 Sum_probs=45.7
Q ss_pred HHHHhCCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCC----------ceeecCCeEEEEecCCC
Q 003088 725 EAIRRRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHG----------RRVSFKNALIVMTSNVG 782 (849)
Q Consensus 725 ~~i~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g----------~~~~~~~~~iI~tsn~~ 782 (849)
+++.++.+|+|||||++.+++.+|..|+++|+++++...++ ......++++|+++|..
T Consensus 220 G~L~kAnGGtL~LDei~~L~~~~q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~~ 287 (637)
T PRK13765 220 GAIHKAHKGVLFIDEINTLDLESQQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNLD 287 (637)
T ss_pred CceeECCCcEEEEeChHhCCHHHHHHHHHHHHhCCEEecccccccccccCCCcceeeeeEEEEecCcC
Confidence 34556778999999999999999999999999999866332 11112388999999985
No 367
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.97 E-value=4.2e-09 Score=119.48 Aligned_cols=172 Identities=17% Similarity=0.240 Sum_probs=108.2
Q ss_pred ccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCC--CCceeEeeccccccccc---
Q 003088 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGS--ESSMLRLDMSEYMERHT--- 703 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~--~~~~i~i~~~~~~~~~~--- 703 (849)
+.++|+++.++.|...+.....+.. | .+++++||||||||++++.+.+.+... +..++.++|........
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~~~~----~-~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~ 104 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALRGSR----P-LNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFS 104 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCC----C-CeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHH
Confidence 5689999999999988876543322 1 349999999999999999999876332 36688999876543211
Q ss_pred --cccccCCCCCccccccC---cchhHHHHh-CCCeEEEEeCccccC----HHHHHHHHHHhhcCeeecCCCceeecCCe
Q 003088 704 --VSKLIGSPPGYVGYEEG---GLLTEAIRR-RPFTLLLLDEIEKAH----PDIFNILLQVFEDGHLTDSHGRRVSFKNA 773 (849)
Q Consensus 704 --~~~l~g~~~g~vg~~~~---~~l~~~i~~-~~~~vl~lDEid~l~----~~~~~~Ll~~le~g~~~~~~g~~~~~~~~ 773 (849)
...+.+.+....|.... ..+.+.+.. ..+.||+|||+|.+. .+.+..|+..++... ..++
T Consensus 105 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~----------~~~v 174 (394)
T PRK00411 105 EIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYP----------GARI 174 (394)
T ss_pred HHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccC----------CCeE
Confidence 11222311111221111 112223332 234799999999986 456666666665411 1257
Q ss_pred EEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccc-cEEEcCCCCHHHHccccC
Q 003088 774 LIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRID-EVVVFRSLEKAQVCQLPL 848 (849)
Q Consensus 774 ~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d-~~i~f~pl~~~~~~~I~~ 848 (849)
.+|+++|.... ...+++.+..|+. ..|.|+|++.+++.+|++
T Consensus 175 ~vI~i~~~~~~---------------------------------~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~ 217 (394)
T PRK00411 175 GVIGISSDLTF---------------------------------LYILDPRVKSVFRPEEIYFPPYTADEIFDILK 217 (394)
T ss_pred EEEEEECCcch---------------------------------hhhcCHHHHhcCCcceeecCCCCHHHHHHHHH
Confidence 78888885211 0115566666763 578999999999888763
No 368
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.96 E-value=6.4e-09 Score=120.38 Aligned_cols=178 Identities=20% Similarity=0.262 Sum_probs=113.3
Q ss_pred cCCCCccccHHHHHHHHHHHh--cCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhh------
Q 003088 287 ELIDPVIGRETEIQRIIQILC--RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM------ 358 (849)
Q Consensus 287 ~~l~~iiG~~~~i~~l~~~l~--~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~------ 358 (849)
..|++++|....++.+.+.+. .....+|||+|++||||+.+|++|...-... +.+++.+||..+-
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~-------~~pfv~inC~~l~e~lles 281 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLSGRR-------DFPFVAINCGAIAESLLEA 281 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHhcCcC-------CCCEEEeccccCChhHHHH
Confidence 457889999999998888763 4566799999999999999999998765433 4556666665432
Q ss_pred --ccccccchHHHH----HHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCCC---------
Q 003088 359 --AGAKERGELEAR----VTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGE--------- 423 (849)
Q Consensus 359 --~~~~~~g~~e~~----l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~~--------- 423 (849)
.|. ..|.|... -..+++ ...++.||||||+.| ..+.+..|..+|+.+.
T Consensus 282 eLFG~-~~gaftga~~~~~~Gl~e---~A~gGTLfLdeI~~L-------------p~~~Q~~Ll~~L~~~~~~r~g~~~~ 344 (526)
T TIGR02329 282 ELFGY-EEGAFTGARRGGRTGLIE---AAHRGTLFLDEIGEM-------------PLPLQTRLLRVLEEREVVRVGGTEP 344 (526)
T ss_pred HhcCC-cccccccccccccccchh---hcCCceEEecChHhC-------------CHHHHHHHHHHHhcCcEEecCCCce
Confidence 111 01111110 011222 234569999999999 5677888888886543
Q ss_pred ----eEEEEccChHHHHH--HhhccHHHHhccccEEecCCCHH----HHHHHHHHHHHHHHhhcCCccCHHHHHH
Q 003088 424 ----LQCIASTTQDEHRT--QFEKDKALARRFQPVLISEPSQE----DAVRILLGLREKYEAHHNCKFTLEAINA 488 (849)
Q Consensus 424 ----i~vI~at~~~~~~~--~~~~d~al~~Rf~~i~~~~ps~~----e~~~iL~~~~~~~~~~~~~~i~~~~l~~ 488 (849)
+++|++|+.+--.. .-.....|..|+..+.+..|+.. |...++..++.++....++.++++++..
T Consensus 345 ~~~dvRiIaat~~~l~~~v~~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~ 419 (526)
T TIGR02329 345 VPVDVRVVAATHCALTTAVQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQV 419 (526)
T ss_pred eeecceEEeccCCCHHHHhhhcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 47999988653111 01223455567765555555444 4555555556655545566788888765
No 369
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.96 E-value=5.7e-09 Score=120.67 Aligned_cols=183 Identities=17% Similarity=0.265 Sum_probs=111.8
Q ss_pred CCCCccccHHHHHHHHHHHh--cCCCCCCeEeCCCCChHHHHHHHHHHHhh-hCCCCccccCCeEEEeehhhhhc-----
Q 003088 288 LIDPVIGRETEIQRIIQILC--RRTKNNPILLGESGVGKTAIAEGLAIRIV-QAEVPVFLLSKRIMSLDMGLLMA----- 359 (849)
Q Consensus 288 ~l~~iiG~~~~i~~l~~~l~--~~~~~niLL~GppGtGKT~la~~la~~l~-~~~~p~~~~~~~~~~l~~~~~~~----- 359 (849)
.|++++|....++++.+.+. .....+|||+|++||||+.+|++|...+. ..+......+.+++.+||..+..
T Consensus 217 ~f~~iiG~S~~m~~~~~~i~~~A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e~lles 296 (538)
T PRK15424 217 VLGDLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEA 296 (538)
T ss_pred chhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCChhhHHH
Confidence 57889999999998888763 45667999999999999999999998621 11100111256777777765421
Q ss_pred ---cccccchHHHHH----HHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCCC---------
Q 003088 360 ---GAKERGELEARV----TTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGE--------- 423 (849)
Q Consensus 360 ---~~~~~g~~e~~l----~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~~--------- 423 (849)
|. ..|.|.... ..+++ ...++.||||||+.| ....+..|..+|+.+.
T Consensus 297 eLFG~-~~gaftga~~~~~~Gl~e---~A~gGTLfLdeI~~L-------------p~~~Q~kLl~~L~e~~~~r~G~~~~ 359 (538)
T PRK15424 297 ELFGY-EEGAFTGSRRGGRAGLFE---IAHGGTLFLDEIGEM-------------PLPLQTRLLRVLEEKEVTRVGGHQP 359 (538)
T ss_pred HhcCC-ccccccCccccccCCchh---ccCCCEEEEcChHhC-------------CHHHHHHHHhhhhcCeEEecCCCce
Confidence 10 001111000 01222 234579999999999 5677888888887543
Q ss_pred ----eEEEEccChHHHHHH--hhccHHHHhccccEEecCCCHHHHH----HHHHHHHHHHHhhcCCccCHHHHH
Q 003088 424 ----LQCIASTTQDEHRTQ--FEKDKALARRFQPVLISEPSQEDAV----RILLGLREKYEAHHNCKFTLEAIN 487 (849)
Q Consensus 424 ----i~vI~at~~~~~~~~--~~~d~al~~Rf~~i~~~~ps~~e~~----~iL~~~~~~~~~~~~~~i~~~~l~ 487 (849)
+++|++|+.+--... -...+.|..|+..+.+..|...+|. .++..+++++....+..++++++.
T Consensus 360 ~~~dvRiIaat~~~L~~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~ 433 (538)
T PRK15424 360 VPVDVRVISATHCDLEEDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSAPFSAALRQ 433 (538)
T ss_pred eccceEEEEecCCCHHHHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 489999886531100 0123455567776666666555544 444445544433345567776653
No 370
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.95 E-value=1.7e-09 Score=110.35 Aligned_cols=150 Identities=19% Similarity=0.282 Sum_probs=105.6
Q ss_pred HhccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHh---cCCCCceeEeeccccccccc
Q 003088 627 LKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACY---FGSESSMLRLDMSEYMERHT 703 (849)
Q Consensus 627 l~~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l---~~~~~~~i~i~~~~~~~~~~ 703 (849)
|...|.-...+.+.....+++....... .||+.||+|.||+.+|+.|.+.- ..-..+|+.++|..+.....
T Consensus 182 lksgiatrnp~fnrmieqierva~rsr~------p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~a 255 (531)
T COG4650 182 LKSGIATRNPHFNRMIEQIERVAIRSRA------PILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTA 255 (531)
T ss_pred HHhcccccChHHHHHHHHHHHHHhhccC------CeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchH
Confidence 3344555555555555666554332222 29999999999999999887543 11246899999999999988
Q ss_pred cccccCCCCC-ccccccCcchhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCC
Q 003088 704 VSKLIGSPPG-YVGYEEGGLLTEAIRRRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVG 782 (849)
Q Consensus 704 ~~~l~g~~~g-~vg~~~~~~l~~~i~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~ 782 (849)
.+-|||.-.| +.|..+ .-.+.++.+.++.||+|||..+..+-|..||++||+.++..-+...-..+++-+|+-|-.+
T Consensus 256 msalfghvkgaftga~~--~r~gllrsadggmlfldeigelgadeqamllkaieekrf~pfgsdr~v~sdfqliagtvrd 333 (531)
T COG4650 256 MSALFGHVKGAFTGARE--SREGLLRSADGGMLFLDEIGELGADEQAMLLKAIEEKRFYPFGSDRQVSSDFQLIAGTVRD 333 (531)
T ss_pred HHHHHhhhccccccchh--hhhhhhccCCCceEehHhhhhcCccHHHHHHHHHHhhccCCCCCccccccchHHhhhhHHH
Confidence 9999997554 334332 2345677888999999999999999999999999998877644333333456666655544
Q ss_pred ch
Q 003088 783 ST 784 (849)
Q Consensus 783 ~~ 784 (849)
.-
T Consensus 334 lr 335 (531)
T COG4650 334 LR 335 (531)
T ss_pred HH
Confidence 33
No 371
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.95 E-value=1.9e-09 Score=120.11 Aligned_cols=178 Identities=20% Similarity=0.338 Sum_probs=115.6
Q ss_pred cCCCCccccHHHHHHHHHHHhc--CCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhh------
Q 003088 287 ELIDPVIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM------ 358 (849)
Q Consensus 287 ~~l~~iiG~~~~i~~l~~~l~~--~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~------ 358 (849)
.+|+++||....+.++++...+ +...+|||+|++||||..+|++|.+.-.+. +.+++.++|.++-
T Consensus 242 y~f~~Iig~S~~m~~~~~~akr~A~tdstVLi~GESGTGKElfA~~IH~~S~R~-------~~PFIaiNCaAiPe~LlES 314 (560)
T COG3829 242 YTFDDIIGESPAMLRVLELAKRIAKTDSTVLILGESGTGKELFARAIHNLSPRA-------NGPFIAINCAAIPETLLES 314 (560)
T ss_pred cchhhhccCCHHHHHHHHHHHhhcCCCCcEEEecCCCccHHHHHHHHHhcCccc-------CCCeEEEecccCCHHHHHH
Confidence 4689999999999999887755 456789999999999999999999877655 4455566655431
Q ss_pred --ccccccchHHHHHH----HHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCC----------
Q 003088 359 --AGAKERGELEARVT----TLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG---------- 422 (849)
Q Consensus 359 --~~~~~~g~~e~~l~----~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~---------- 422 (849)
.|+ ..|.|....+ -+|+. ++++.||+|||..| ....|.-|+.+|+..
T Consensus 315 ELFGy-e~GAFTGA~~~GK~GlfE~---A~gGTLFLDEIgem-------------pl~LQaKLLRVLQEkei~rvG~t~~ 377 (560)
T COG3829 315 ELFGY-EKGAFTGASKGGKPGLFEL---ANGGTLFLDEIGEM-------------PLPLQAKLLRVLQEKEIERVGGTKP 377 (560)
T ss_pred HHhCc-CCccccccccCCCCcceee---ccCCeEEehhhccC-------------CHHHHHHHHHHHhhceEEecCCCCc
Confidence 222 1233332222 12232 33569999999999 577888888888642
Q ss_pred ---CeEEEEccChHHHHHHhhccHHHHh----ccccEEecCCCHHHH----HHHHHHHHHHHHhhcC--Cc-cCHHHHHH
Q 003088 423 ---ELQCIASTTQDEHRTQFEKDKALAR----RFQPVLISEPSQEDA----VRILLGLREKYEAHHN--CK-FTLEAINA 488 (849)
Q Consensus 423 ---~i~vI~at~~~~~~~~~~~d~al~~----Rf~~i~~~~ps~~e~----~~iL~~~~~~~~~~~~--~~-i~~~~l~~ 488 (849)
++++|+|||.+-- +.++ +..|+. |+.++.+..|...|| ..+...++++|..+++ +. ++++++..
T Consensus 378 ~~vDVRIIAATN~nL~-~~i~-~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a~~~ 455 (560)
T COG3829 378 IPVDVRIIAATNRNLE-KMIA-EGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPDALAL 455 (560)
T ss_pred eeeEEEEEeccCcCHH-HHHh-cCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHHHHHH
Confidence 3789999997641 1111 233333 777666666644444 4444445555544443 33 67877765
Q ss_pred HH
Q 003088 489 AV 490 (849)
Q Consensus 489 ~a 490 (849)
+.
T Consensus 456 L~ 457 (560)
T COG3829 456 LL 457 (560)
T ss_pred HH
Confidence 43
No 372
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.94 E-value=1.1e-09 Score=105.20 Aligned_cols=111 Identities=23% Similarity=0.357 Sum_probs=67.9
Q ss_pred CCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhcccc----cc---chHHHHHHHHHHHHHhcCCeE
Q 003088 313 NPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAK----ER---GELEARVTTLISEIQKSGDVI 385 (849)
Q Consensus 313 niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~~~~----~~---g~~e~~l~~l~~~~~~~~~~I 385 (849)
|++|+||||||||++|+.+|+.+ +.+++.+.+........ +. +.++..-..+...++ .+.|
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~----------~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~--~~~i 68 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALL----------GRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR--KGGI 68 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH----------TCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH--EEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHh----------hcceEEEEeccccccccceeeeeeccccccccccccccccc--ceeE
Confidence 58999999999999999999998 45555555443211000 00 000000011111111 4689
Q ss_pred EEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcC---------------C------CeEEEEccChHHHHHHhhccHH
Q 003088 386 LFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR---------------G------ELQCIASTTQDEHRTQFEKDKA 444 (849)
Q Consensus 386 LfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~---------------~------~i~vI~at~~~~~~~~~~~d~a 444 (849)
+||||++.. ..++++.|..+++. . ++++|+|+|+.. .....++++
T Consensus 69 l~lDEin~a-------------~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~-~~~~~l~~a 134 (139)
T PF07728_consen 69 LVLDEINRA-------------PPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRD-KGRKELSPA 134 (139)
T ss_dssp EEESSCGG---------------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST---TTTTCHH
T ss_pred EEECCcccC-------------CHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCC-CCcCcCCHH
Confidence 999999988 35666677666642 1 378999999877 444688999
Q ss_pred HHhcc
Q 003088 445 LARRF 449 (849)
Q Consensus 445 l~~Rf 449 (849)
|++||
T Consensus 135 l~~Rf 139 (139)
T PF07728_consen 135 LLDRF 139 (139)
T ss_dssp HHTT-
T ss_pred HHhhC
Confidence 99998
No 373
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.94 E-value=8.8e-09 Score=112.60 Aligned_cols=151 Identities=17% Similarity=0.198 Sum_probs=99.5
Q ss_pred HHHHHHHHhcCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCC-C--cccc------------CCeEEEeehhhhh-----
Q 003088 299 IQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEV-P--VFLL------------SKRIMSLDMGLLM----- 358 (849)
Q Consensus 299 i~~l~~~l~~~~~~niLL~GppGtGKT~la~~la~~l~~~~~-p--~~~~------------~~~~~~l~~~~~~----- 358 (849)
-+++... ..+-...+||+||+|+||+++|+.+|+.+.+... + .... +..++.+......
T Consensus 10 ~~~l~~~-~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~ 88 (342)
T PRK06964 10 WNRLQAL-RARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPG 88 (342)
T ss_pred HHHHHHh-cCCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccc
Confidence 3444443 2333445689999999999999999999987531 1 0110 1112222111000
Q ss_pred ------------cccc----ccchHHHHHHHHHHHHH----hcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhh
Q 003088 359 ------------AGAK----ERGELEARVTTLISEIQ----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPS 418 (849)
Q Consensus 359 ------------~~~~----~~g~~e~~l~~l~~~~~----~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~ 418 (849)
.+.+ ...-..+.++.+.+.+. .++..|+|||++|.| ...+.|.|++.
T Consensus 89 ~~~~~~~~~~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m-------------~~~AaNaLLKt 155 (342)
T PRK06964 89 AADEAKEADADEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEAL-------------NVAAANALLKT 155 (342)
T ss_pred cccccccchhhcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhc-------------CHHHHHHHHHH
Confidence 0000 00112345556655553 245679999999999 56789999999
Q ss_pred hcC--CCeEEEEccChHHHHHHhhccHHHHhccccEEecCCCHHHHHHHHHH
Q 003088 419 LGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLG 468 (849)
Q Consensus 419 le~--~~i~vI~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL~~ 468 (849)
||+ +..++|.+|+..+ .+.|.++|||+.+.|++|+.++..+.|..
T Consensus 156 LEEPp~~t~fiL~t~~~~-----~LLpTI~SRcq~i~~~~~~~~~~~~~L~~ 202 (342)
T PRK06964 156 LEEPPPGTVFLLVSARID-----RLLPTILSRCRQFPMTVPAPEAAAAWLAA 202 (342)
T ss_pred hcCCCcCcEEEEEECChh-----hCcHHHHhcCEEEEecCCCHHHHHHHHHH
Confidence 995 4577888887776 88999999999999999999998888854
No 374
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.93 E-value=1.5e-08 Score=109.83 Aligned_cols=147 Identities=14% Similarity=0.103 Sum_probs=101.6
Q ss_pred HHHHHHHHHhcCCCCC-CeEeCCCCChHHHHHHHHHHHhhhCCCCcc-c------------cCCeEEEeehhhhhccccc
Q 003088 298 EIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEVPVF-L------------LSKRIMSLDMGLLMAGAKE 363 (849)
Q Consensus 298 ~i~~l~~~l~~~~~~n-iLL~GppGtGKT~la~~la~~l~~~~~p~~-~------------~~~~~~~l~~~~~~~~~~~ 363 (849)
.-+++...+...+.+| +||+||.|+||+++|+.+|+.+.+.+.+.. . .+-.++.+.... . .+.
T Consensus 11 ~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~--~-~~~ 87 (319)
T PRK06090 11 VWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK--E-GKS 87 (319)
T ss_pred HHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc--C-CCc
Confidence 4566667776666665 689999999999999999999987542210 0 011222222110 0 011
Q ss_pred cchHHHHHHHHHHHHH----hcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCC--CeEEEEccChHHHHH
Q 003088 364 RGELEARVTTLISEIQ----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG--ELQCIASTTQDEHRT 437 (849)
Q Consensus 364 ~g~~e~~l~~l~~~~~----~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~--~i~vI~at~~~~~~~ 437 (849)
-..+.++.+.+.+. .++..|++||++|.| ...++|.|++.||++ +..+|..|+..+
T Consensus 88 --I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m-------------~~~AaNaLLKtLEEPp~~t~fiL~t~~~~--- 149 (319)
T PRK06090 88 --ITVEQIRQCNRLAQESSQLNGYRLFVIEPADAM-------------NESASNALLKTLEEPAPNCLFLLVTHNQK--- 149 (319)
T ss_pred --CCHHHHHHHHHHHhhCcccCCceEEEecchhhh-------------CHHHHHHHHHHhcCCCCCeEEEEEECChh---
Confidence 11233455444443 245679999999999 567899999999964 577777777665
Q ss_pred HhhccHHHHhccccEEecCCCHHHHHHHHH
Q 003088 438 QFEKDKALARRFQPVLISEPSQEDAVRILL 467 (849)
Q Consensus 438 ~~~~d~al~~Rf~~i~~~~ps~~e~~~iL~ 467 (849)
.+-|.++|||+.+.|++|+.++..+.|.
T Consensus 150 --~lLpTI~SRCq~~~~~~~~~~~~~~~L~ 177 (319)
T PRK06090 150 --RLLPTIVSRCQQWVVTPPSTAQAMQWLK 177 (319)
T ss_pred --hChHHHHhcceeEeCCCCCHHHHHHHHH
Confidence 7889999999999999999999888774
No 375
>PRK06893 DNA replication initiation factor; Validated
Probab=98.93 E-value=3.7e-09 Score=110.32 Aligned_cols=127 Identities=15% Similarity=0.265 Sum_probs=82.6
Q ss_pred cceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccccccCCCCCccccccCcchhHHHHhCCCeEEEEeCc
Q 003088 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRRRPFTLLLLDEI 740 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~i~~~~~~vl~lDEi 740 (849)
.++|+||||||||++++++++.+...+.....+.+...... . ..+.+.++ ...+|+|||+
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~~-------~-----------~~~~~~~~--~~dlLilDDi 100 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQYF-------S-----------PAVLENLE--QQDLVCLDDL 100 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhhh-------h-----------HHHHhhcc--cCCEEEEeCh
Confidence 48999999999999999999987544444555554321100 0 01111111 2359999999
Q ss_pred cccC--HHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHH
Q 003088 741 EKAH--PDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELK 818 (849)
Q Consensus 741 d~l~--~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~ 818 (849)
+.+. +..+..|+.+++... . ....++|+|+|..+..+.
T Consensus 101 ~~~~~~~~~~~~l~~l~n~~~--~-------~~~~illits~~~p~~l~------------------------------- 140 (229)
T PRK06893 101 QAVIGNEEWELAIFDLFNRIK--E-------QGKTLLLISADCSPHALS------------------------------- 140 (229)
T ss_pred hhhcCChHHHHHHHHHHHHHH--H-------cCCcEEEEeCCCChHHcc-------------------------------
Confidence 9874 455667777776521 0 123456788887665432
Q ss_pred hhCChHHhhccc--cEEEcCCCCHHHHccccC
Q 003088 819 AYFRPELLNRID--EVVVFRSLEKAQVCQLPL 848 (849)
Q Consensus 819 ~~~~pell~R~d--~~i~f~pl~~~~~~~I~~ 848 (849)
...|+|.+|+. .++.+.|++.+++.+|++
T Consensus 141 -~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~ 171 (229)
T PRK06893 141 -IKLPDLASRLTWGEIYQLNDLTDEQKIIVLQ 171 (229)
T ss_pred -ccchhHHHHHhcCCeeeCCCCCHHHHHHHHH
Confidence 03478888883 688899999999888764
No 376
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.93 E-value=6e-09 Score=121.60 Aligned_cols=183 Identities=22% Similarity=0.294 Sum_probs=114.6
Q ss_pred CCCCccccHHHHHHHHHHHhc--CCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhc------
Q 003088 288 LIDPVIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA------ 359 (849)
Q Consensus 288 ~l~~iiG~~~~i~~l~~~l~~--~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~------ 359 (849)
....+||+...++.+.+.+.+ ....+|||+|++||||+++|++|....... +.+++.+||..+..
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~-------~~p~v~v~c~~~~~~~~e~~ 257 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRA-------DKPLVYLNCAALPESLAESE 257 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCCcC-------CCCeEEEEcccCChHHHHHH
Confidence 467899999999998887644 456789999999999999999999876443 44566666654321
Q ss_pred --cccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCC-------------Ce
Q 003088 360 --GAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-------------EL 424 (849)
Q Consensus 360 --~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~-------------~i 424 (849)
|. ..|.+..........+....+++||||||+.| ..+++..|..+++.+ ++
T Consensus 258 lfG~-~~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L-------------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~ 323 (509)
T PRK05022 258 LFGH-VKGAFTGAISNRSGKFELADGGTLFLDEIGEL-------------PLALQAKLLRVLQYGEIQRVGSDRSLRVDV 323 (509)
T ss_pred hcCc-cccccCCCcccCCcchhhcCCCEEEecChhhC-------------CHHHHHHHHHHHhcCCEeeCCCCcceecce
Confidence 10 00111000000000122344568999999999 567777887777643 46
Q ss_pred EEEEccChHHHH--HHhhccHHHHhccccEEecCCCHH----HHHHHHHHHHHHHHhhc---CCccCHHHHHHHHH
Q 003088 425 QCIASTTQDEHR--TQFEKDKALARRFQPVLISEPSQE----DAVRILLGLREKYEAHH---NCKFTLEAINAAVH 491 (849)
Q Consensus 425 ~vI~at~~~~~~--~~~~~d~al~~Rf~~i~~~~ps~~----e~~~iL~~~~~~~~~~~---~~~i~~~~l~~~a~ 491 (849)
++|++|+.+--. ..-.....|..|+..+.|..|+-. |...+++.+.+++.... .+.++++++..+..
T Consensus 324 RiI~~t~~~l~~~~~~~~f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~ 399 (509)
T PRK05022 324 RVIAATNRDLREEVRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLA 399 (509)
T ss_pred EEEEecCCCHHHHHHcCCccHHHHhcccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHh
Confidence 899999875311 111244667778875545555443 44455555555554332 36789988876654
No 377
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.93 E-value=4e-09 Score=111.95 Aligned_cols=144 Identities=19% Similarity=0.254 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccccccCCCCC---
Q 003088 637 AVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPG--- 713 (849)
Q Consensus 637 ~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g--- 713 (849)
..+.+..++...+. ...+||+||.|+||+.+|..+|+.+++.+.+ -.|..+.....++-.+=.|.+
T Consensus 5 ~~~~L~~~i~~~rl--------~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~---~~c~~~~~~~HPD~~~i~p~~~~~ 73 (290)
T PRK05917 5 AWEALIQRVRDQKV--------PSAIILHGQDLSNLSARAYELASLILKETSP---EAAYKISQKIHPDIHEFSPQGKGR 73 (290)
T ss_pred HHHHHHHHHHcCCc--------CeeEeeECCCCCcHHHHHHHHHHHHhCCCCc---cHHHHHhcCCCCCEEEEecCCCCC
Confidence 44555566654322 1349999999999999999999998764322 122211111111111111211
Q ss_pred ccccccCcchhHHHHhC----CCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCchhhhcc
Q 003088 714 YVGYEEGGLLTEAIRRR----PFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKG 789 (849)
Q Consensus 714 ~vg~~~~~~l~~~i~~~----~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~~~ 789 (849)
.++.++...+.+.+... ++.|++||++|+|+.+++|.||+.||+ +..+++||+.|+....
T Consensus 74 ~I~idqiR~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEE-----------Pp~~~~fiL~~~~~~~----- 137 (290)
T PRK05917 74 LHSIETPRAIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLED-----------PPQHGVIILTSAKPQR----- 137 (290)
T ss_pred cCcHHHHHHHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhc-----------CCCCeEEEEEeCChhh-----
Confidence 12333333333444333 357999999999999999999999999 4568888887775321
Q ss_pred cCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCC
Q 003088 790 RHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLE 839 (849)
Q Consensus 790 ~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~ 839 (849)
+.|.+++|| ..+.|+|+.
T Consensus 138 -------------------------------ll~TI~SRc-q~~~~~~~~ 155 (290)
T PRK05917 138 -------------------------------LPPTIRSRS-LSIHIPMEE 155 (290)
T ss_pred -------------------------------CcHHHHhcc-eEEEccchh
Confidence 678899999 788888765
No 378
>PRK08727 hypothetical protein; Validated
Probab=98.92 E-value=6.7e-09 Score=108.67 Aligned_cols=125 Identities=20% Similarity=0.219 Sum_probs=86.2
Q ss_pred cceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccccccCCCCCccccccCcchhHHHHh-CCCeEEEEeC
Q 003088 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRR-RPFTLLLLDE 739 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~i~~-~~~~vl~lDE 739 (849)
+++|+||+|||||+++++++..+...+...+.+.+.+... .+.+.+.. ....+|+|||
T Consensus 43 ~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~---------------------~~~~~~~~l~~~dlLiIDD 101 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAG---------------------RLRDALEALEGRSLVALDG 101 (233)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhh---------------------hHHHHHHHHhcCCEEEEeC
Confidence 4999999999999999999988765555555555543221 11122211 1234999999
Q ss_pred ccccC--HHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHH
Q 003088 740 IEKAH--PDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEEL 817 (849)
Q Consensus 740 id~l~--~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l 817 (849)
++.+. +..+..|+.+++... .....+|+|+|..+..+.
T Consensus 102 i~~l~~~~~~~~~lf~l~n~~~----------~~~~~vI~ts~~~p~~l~------------------------------ 141 (233)
T PRK08727 102 LESIAGQREDEVALFDFHNRAR----------AAGITLLYTARQMPDGLA------------------------------ 141 (233)
T ss_pred cccccCChHHHHHHHHHHHHHH----------HcCCeEEEECCCChhhhh------------------------------
Confidence 99885 456677777776521 113458889987655432
Q ss_pred HhhCChHHhhcc--ccEEEcCCCCHHHHccccC
Q 003088 818 KAYFRPELLNRI--DEVVVFRSLEKAQVCQLPL 848 (849)
Q Consensus 818 ~~~~~pell~R~--d~~i~f~pl~~~~~~~I~~ 848 (849)
.+.|+|.+|| ..++.|+|++.+++.+|++
T Consensus 142 --~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~ 172 (233)
T PRK08727 142 --LVLPDLRSRLAQCIRIGLPVLDDVARAAVLR 172 (233)
T ss_pred --hhhHHHHHHHhcCceEEecCCCHHHHHHHHH
Confidence 1568999997 4689999999999988864
No 379
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.92 E-value=7.2e-09 Score=120.64 Aligned_cols=205 Identities=15% Similarity=0.169 Sum_probs=124.2
Q ss_pred CCccccHHHHHHHHHHHhcCC------------CCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhh
Q 003088 290 DPVIGRETEIQRIIQILCRRT------------KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLL 357 (849)
Q Consensus 290 ~~iiG~~~~i~~l~~~l~~~~------------~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~ 357 (849)
..++|++.....+.-.+.... ..|+||+|+||+|||++|+.+++...... +..+.. .+...+
T Consensus 203 p~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~---~~~~~~---~~~~~l 276 (509)
T smart00350 203 PSIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAV---YTTGKG---SSAVGL 276 (509)
T ss_pred ccccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcce---EcCCCC---CCcCCc
Confidence 368899987666655553321 13899999999999999999998763210 000000 011011
Q ss_pred hccc---cccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCC------------
Q 003088 358 MAGA---KERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG------------ 422 (849)
Q Consensus 358 ~~~~---~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~------------ 422 (849)
.... ...|++. ++. ..+..+.+++|+|||++.+ ....+..|...|+.+
T Consensus 277 ~~~~~~~~~~g~~~--~~~--G~l~~A~~Gil~iDEi~~l-------------~~~~q~~L~e~me~~~i~i~k~G~~~~ 339 (509)
T smart00350 277 TAAVTRDPETREFT--LEG--GALVLADNGVCCIDEFDKM-------------DDSDRTAIHEAMEQQTISIAKAGITTT 339 (509)
T ss_pred cccceEccCcceEE--ecC--ccEEecCCCEEEEechhhC-------------CHHHHHHHHHHHhcCEEEEEeCCEEEE
Confidence 1000 0011110 000 0111234569999999999 345567777777643
Q ss_pred ---CeEEEEccChHH--HH------HHhhccHHHHhccc--cEEecCCCHHHHHHHHHHHHHHHHhh-------cCCccC
Q 003088 423 ---ELQCIASTTQDE--HR------TQFEKDKALARRFQ--PVLISEPSQEDAVRILLGLREKYEAH-------HNCKFT 482 (849)
Q Consensus 423 ---~i~vI~at~~~~--~~------~~~~~d~al~~Rf~--~i~~~~ps~~e~~~iL~~~~~~~~~~-------~~~~i~ 482 (849)
++.+|+|+|+.+ |. .-+.+.+++.+||+ .+..+.|+.+...+|++.+...+... ....++
T Consensus 340 l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~ 419 (509)
T smart00350 340 LNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPIS 419 (509)
T ss_pred ecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCC
Confidence 357899999753 11 11478999999997 36778899999999998876533211 112466
Q ss_pred HHHHHHHHHhhhcccccCcchhhHHHHHHHHhhHHH
Q 003088 483 LEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAH 518 (849)
Q Consensus 483 ~~~l~~~a~ls~~~~~~r~~p~~ai~ll~~a~~~~~ 518 (849)
.+.+.....++..++. ..+++.+.+.+.......+
T Consensus 420 ~~~l~~yi~~ar~~~~-P~ls~~~~~~i~~~y~~~R 454 (509)
T smart00350 420 QEFLRKYIAYAREKIK-PKLSEEAAEKLVKAYVDLR 454 (509)
T ss_pred HHHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHhc
Confidence 7777777777776432 1367777777777655544
No 380
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=3.2e-09 Score=116.02 Aligned_cols=121 Identities=22% Similarity=0.340 Sum_probs=87.5
Q ss_pred ceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccccccCCCCCccccccCcchhHHHHhC-CCeEEEEeCc
Q 003088 662 MLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRRR-PFTLLLLDEI 740 (849)
Q Consensus 662 lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~i~~~-~~~vl~lDEi 740 (849)
+|||||||||||++.-|+|+.+ +..+.-++.+++.... .|...+... +.+||+|++|
T Consensus 238 YLLYGPPGTGKSS~IaAmAn~L---~ydIydLeLt~v~~n~-------------------dLr~LL~~t~~kSIivIEDI 295 (457)
T KOG0743|consen 238 YLLYGPPGTGKSSFIAAMANYL---NYDIYDLELTEVKLDS-------------------DLRHLLLATPNKSILLIEDI 295 (457)
T ss_pred ceeeCCCCCCHHHHHHHHHhhc---CCceEEeeeccccCcH-------------------HHHHHHHhCCCCcEEEEeec
Confidence 9999999999999999999997 5556666666654421 244444443 4689999999
Q ss_pred cccC------------------HHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCchhhhcccCCccccccccCC
Q 003088 741 EKAH------------------PDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNE 802 (849)
Q Consensus 741 d~l~------------------~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~ 802 (849)
|..- .-.+..||..+|.=. ...| ..-|||+|||.-
T Consensus 296 Dcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlw--Sscg-----~ERIivFTTNh~-------------------- 348 (457)
T KOG0743|consen 296 DCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLW--SSCG-----DERIIVFTTNHK-------------------- 348 (457)
T ss_pred ccccccccccccccccccCCcceeehHHhhhhhcccc--ccCC-----CceEEEEecCCh--------------------
Confidence 9761 124677999998622 2121 134789999972
Q ss_pred cccHHhHHHHHHHHHHhhCChHHhh--ccccEEEcCCCCHHHHcccc
Q 003088 803 STSYAGMKTLVVEELKAYFRPELLN--RIDEVVVFRSLEKAQVCQLP 847 (849)
Q Consensus 803 ~~~~~~~~~~~~~~l~~~~~pell~--R~d~~i~f~pl~~~~~~~I~ 847 (849)
..|+|+|+. |+|..|.+...+.+.+..++
T Consensus 349 ----------------EkLDPALlRpGRmDmhI~mgyCtf~~fK~La 379 (457)
T KOG0743|consen 349 ----------------EKLDPALLRPGRMDMHIYMGYCTFEAFKTLA 379 (457)
T ss_pred ----------------hhcCHhhcCCCcceeEEEcCCCCHHHHHHHH
Confidence 118999996 99999999988888776553
No 381
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.91 E-value=1.1e-08 Score=104.66 Aligned_cols=175 Identities=19% Similarity=0.274 Sum_probs=112.3
Q ss_pred ccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeecccccccccccccc
Q 003088 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLI 708 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~ 708 (849)
+.++|.+..++.|......--.|.+ -.|+|++|+.|||||.+++++...+...+..+|.+.-..+..-
T Consensus 27 ~~L~Gie~Qk~~l~~Nt~~Fl~G~p-----annvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~~l------- 94 (249)
T PF05673_consen 27 DDLIGIERQKEALIENTEQFLQGLP-----ANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLGDL------- 94 (249)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcCCC-----CcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhccH-------
Confidence 4578888888888888776655543 3569999999999999999999998777777777766554321
Q ss_pred CCCCCccccccCcchhHHHHhCC-CeEEEEeCccccC-HHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCchhh
Q 003088 709 GSPPGYVGYEEGGLLTEAIRRRP-FTLLLLDEIEKAH-PDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTI 786 (849)
Q Consensus 709 g~~~g~vg~~~~~~l~~~i~~~~-~~vl~lDEid~l~-~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l 786 (849)
..+.+.++..+ .=|||+|++.-=. ..-...|..+||.|- . ....|++|.+|||.- .|
T Consensus 95 ------------~~l~~~l~~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgl-e------~~P~NvliyATSNRR--HL 153 (249)
T PF05673_consen 95 ------------PELLDLLRDRPYKFILFCDDLSFEEGDTEYKALKSVLEGGL-E------ARPDNVLIYATSNRR--HL 153 (249)
T ss_pred ------------HHHHHHHhcCCCCEEEEecCCCCCCCcHHHHHHHHHhcCcc-c------cCCCcEEEEEecchh--hc
Confidence 23445555554 4599999976333 334566666676543 1 134599999999973 11
Q ss_pred hcccC-CccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHHHccccC
Q 003088 787 AKGRH-GSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQLPL 848 (849)
Q Consensus 787 ~~~~~-~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~I~~ 848 (849)
..... ..-+.. +.+-- ....+.+ .-.|.+||...|.|.|++.++..+|++
T Consensus 154 v~E~~~d~~~~~---~~eih---~~d~~eE------klSLsDRFGL~l~F~~~~q~~YL~IV~ 204 (249)
T PF05673_consen 154 VPESFSDREDIQ---DDEIH---PSDTIEE------KLSLSDRFGLWLSFYPPDQEEYLAIVR 204 (249)
T ss_pred cchhhhhccCCC---ccccC---cchHHHH------HHhHHHhCCcEEEecCCCHHHHHHHHH
Confidence 11100 000000 00000 0001111 124779999999999999999988874
No 382
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.90 E-value=1.3e-08 Score=122.51 Aligned_cols=176 Identities=19% Similarity=0.259 Sum_probs=113.9
Q ss_pred CCCCccccHHHHHHHHHHHhc--CCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhccccccc
Q 003088 288 LIDPVIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERG 365 (849)
Q Consensus 288 ~l~~iiG~~~~i~~l~~~l~~--~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~~~~~~g 365 (849)
.|++++|.+..++++.+.+.+ ....++||+|++||||+++|++|....... +.+++.+|+..+.. .
T Consensus 323 ~~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~-------~~pfv~vnc~~~~~-----~ 390 (638)
T PRK11388 323 TFDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESERA-------AGPYIAVNCQLYPD-----E 390 (638)
T ss_pred cccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhCCcc-------CCCeEEEECCCCCh-----H
Confidence 588999999999888876643 456679999999999999999999876443 44566666654321 0
Q ss_pred hHHHHHHHHHH------------HHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCC-----------
Q 003088 366 ELEARVTTLIS------------EIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG----------- 422 (849)
Q Consensus 366 ~~e~~l~~l~~------------~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~----------- 422 (849)
.++ ..+|. .+....+++||||||+.| ..+++..|..+++.+
T Consensus 391 ~~~---~elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~l-------------~~~~Q~~Ll~~l~~~~~~~~~~~~~~ 454 (638)
T PRK11388 391 ALA---EEFLGSDRTDSENGRLSKFELAHGGTLFLEKVEYL-------------SPELQSALLQVLKTGVITRLDSRRLI 454 (638)
T ss_pred HHH---HHhcCCCCcCccCCCCCceeECCCCEEEEcChhhC-------------CHHHHHHHHHHHhcCcEEeCCCCceE
Confidence 000 01111 122244679999999999 567788888888754
Q ss_pred --CeEEEEccChHHHH--HHhhccHHHHhccccEEecCCCHHHH----HHHHHHHHHHHHhhc--CCccCHHHHHHHHH
Q 003088 423 --ELQCIASTTQDEHR--TQFEKDKALARRFQPVLISEPSQEDA----VRILLGLREKYEAHH--NCKFTLEAINAAVH 491 (849)
Q Consensus 423 --~i~vI~at~~~~~~--~~~~~d~al~~Rf~~i~~~~ps~~e~----~~iL~~~~~~~~~~~--~~~i~~~~l~~~a~ 491 (849)
++++|++|+.+-.. ..-...+.|.-|+..+.+..|+..+| ..++..++.++.... .+.++++++..+..
T Consensus 455 ~~~~riI~~t~~~l~~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~ 533 (638)
T PRK11388 455 PVDVRVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVS 533 (638)
T ss_pred EeeEEEEEeccCCHHHHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHc
Confidence 46799998875311 11122355666777655555554444 445555555443332 35688888876654
No 383
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.90 E-value=9.2e-10 Score=114.54 Aligned_cols=161 Identities=25% Similarity=0.261 Sum_probs=104.8
Q ss_pred ccCCHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCC-C
Q 003088 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSE-S 688 (849)
Q Consensus 610 ~~~~~~~~~~~~~l~~~l~~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~-~ 688 (849)
..++|.+.+++..+. .+++|++.+..+.+... .+.-| |+|||||||||||....+.|..+++.. .
T Consensus 27 ~~~pwvekyrP~~l~-----dv~~~~ei~st~~~~~~-------~~~lP--h~L~YgPPGtGktsti~a~a~~ly~~~~~ 92 (360)
T KOG0990|consen 27 YPQPWVEKYRPPFLG-----IVIKQEPIWSTENRYSG-------MPGLP--HLLFYGPPGTGKTSTILANARDFYSPHPT 92 (360)
T ss_pred cCCCCccCCCCchhh-----hHhcCCchhhHHHHhcc-------CCCCC--cccccCCCCCCCCCchhhhhhhhcCCCCc
Confidence 356777777776554 47889888877765522 11223 799999999999999999999987731 1
Q ss_pred --ceeEeeccccccccccccccCCCCCccccccCcchhHHHH-------hCCCeEEEEeCccccCHHHHHHHHHHhhcCe
Q 003088 689 --SMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIR-------RRPFTLLLLDEIEKAHPDIFNILLQVFEDGH 759 (849)
Q Consensus 689 --~~i~i~~~~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~i~-------~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~ 759 (849)
.+..++.++-.+. + -+-.. -..+...+ .+....+++||+|.+..++||+|.+.++.
T Consensus 93 ~~m~lelnaSd~rgi-------d----~vr~q--i~~fast~~~~~fst~~~fKlvILDEADaMT~~AQnALRRviek-- 157 (360)
T KOG0990|consen 93 TSMLLELNASDDRGI-------D----PVRQQ--IHLFASTQQPTTYSTHAAFKLVILDEADAMTRDAQNALRRVIEK-- 157 (360)
T ss_pred hhHHHHhhccCccCC-------c----chHHH--HHHHHhhccceeccccCceeEEEecchhHhhHHHHHHHHHHHHH--
Confidence 1222222221110 0 00000 00111111 23567999999999999999999998887
Q ss_pred eecCCCceeecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCC
Q 003088 760 LTDSHGRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLE 839 (849)
Q Consensus 760 ~~~~~g~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~ 839 (849)
...+++|++.+|+... ..|.+..|| ..++|.|++
T Consensus 158 ---------~t~n~rF~ii~n~~~k------------------------------------i~pa~qsRc-trfrf~pl~ 191 (360)
T KOG0990|consen 158 ---------YTANTRFATISNPPQK------------------------------------IHPAQQSRC-TRFRFAPLT 191 (360)
T ss_pred ---------hccceEEEEeccChhh------------------------------------cCchhhccc-ccCCCCCCC
Confidence 2358899999998533 457778888 677888888
Q ss_pred HHHHcc
Q 003088 840 KAQVCQ 845 (849)
Q Consensus 840 ~~~~~~ 845 (849)
..+...
T Consensus 192 ~~~~~~ 197 (360)
T KOG0990|consen 192 MAQQTE 197 (360)
T ss_pred hhhhhh
Confidence 655443
No 384
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.90 E-value=2.3e-08 Score=108.69 Aligned_cols=96 Identities=17% Similarity=0.146 Sum_probs=67.0
Q ss_pred CeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCCC-------------eEEEEccChHHHHHH--hhccHHHHh
Q 003088 383 DVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGE-------------LQCIASTTQDEHRTQ--FEKDKALAR 447 (849)
Q Consensus 383 ~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~~-------------i~vI~at~~~~~~~~--~~~d~al~~ 447 (849)
.+|+-++|+... ..++++.|+.+++.+. .++|+++|+.+|... -+...+|++
T Consensus 237 rGi~~f~Ei~K~-------------~~~~l~~LL~~~qE~~v~~~~~~~~~~~d~liia~sNe~e~~~~~~~k~~eaf~d 303 (361)
T smart00763 237 RGILEFVEMFKA-------------DIKFLHPLLTATQEGNIKGTGGFAMIPIDGLIIAHSNESEWQRFKSNKKNEALLD 303 (361)
T ss_pred CceEEEeehhcC-------------CHHHHHHHhhhhhcceEecCCcccccccceEEEEeCCHHHHhhhhccccchhhhh
Confidence 357777777766 5677888887776433 367999999999865 355799999
Q ss_pred ccccEEecCC-CHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHh
Q 003088 448 RFQPVLISEP-SQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHL 492 (849)
Q Consensus 448 Rf~~i~~~~p-s~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~l 492 (849)
||..|.++.+ +.++-.+|.+..+..-. ..+..+.+.+++.++.+
T Consensus 304 R~~~i~vpY~l~~~~E~~Iy~k~~~~s~-~~~~~~aP~~le~aa~~ 348 (361)
T smart00763 304 RIIKVKVPYCLRVSEEAQIYEKLLRNSD-LTEAHIAPHTLEMAALF 348 (361)
T ss_pred ceEEEeCCCcCCHHHHHHHHHHHhccCc-CcccccCchHHHHHHHH
Confidence 9999999988 77777888876654211 12345666666555443
No 385
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=5.9e-09 Score=115.40 Aligned_cols=173 Identities=17% Similarity=0.264 Sum_probs=114.4
Q ss_pred ccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCC-Cc-eeEeeccccccccccc-
Q 003088 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSE-SS-MLRLDMSEYMERHTVS- 705 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~-~~-~i~i~~~~~~~~~~~~- 705 (849)
+.+.+.++.++++...+...-.|..+ .+++++|+||||||.+++.+.+.+.... .. .+.+||-.+.....+.
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~~~p-----~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~ 91 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRGERP-----SNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLS 91 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcCCCC-----ccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHH
Confidence 44788888999998888776555443 2599999999999999999999885432 22 7999999887653322
Q ss_pred cc---cCCCCCccccccC---cchhHHHHh-CCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEe
Q 003088 706 KL---IGSPPGYVGYEEG---GLLTEAIRR-RPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMT 778 (849)
Q Consensus 706 ~l---~g~~~g~vg~~~~---~~l~~~i~~-~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~t 778 (849)
.+ ++..| ..|.... ..+.+.+.. ...-||+|||+|.+-..-.+.|+.++...... ..++.+|+.
T Consensus 92 ~i~~~~~~~p-~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~--------~~~v~vi~i 162 (366)
T COG1474 92 KILNKLGKVP-LTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGEN--------KVKVSIIAV 162 (366)
T ss_pred HHHHHcCCCC-CCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhcccc--------ceeEEEEEE
Confidence 11 12111 1222221 123333433 33469999999999776556666666442211 235678888
Q ss_pred cCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccc-cEEEcCCCCHHHHccccC
Q 003088 779 SNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRID-EVVVFRSLEKAQVCQLPL 848 (849)
Q Consensus 779 sn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d-~~i~f~pl~~~~~~~I~~ 848 (849)
+|.. .+..+|+|-+.+++. ..|.|+|++.+++.+|++
T Consensus 163 ~n~~---------------------------------~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~ 200 (366)
T COG1474 163 SNDD---------------------------------KFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILR 200 (366)
T ss_pred eccH---------------------------------HHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHH
Confidence 8852 113337777888884 568999999999999974
No 386
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.88 E-value=7.7e-09 Score=108.39 Aligned_cols=127 Identities=13% Similarity=0.168 Sum_probs=81.6
Q ss_pred cceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccccccCCCCCccccccCcchhHHHHhCCCeEEEEeCc
Q 003088 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRRRPFTLLLLDEI 740 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~i~~~~~~vl~lDEi 740 (849)
+++|+||+|||||++++++++.+...+..+..+.+..... + ...+.+.+.. ..+|+|||+
T Consensus 47 ~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~-------------~-----~~~~~~~~~~--~dlliiDdi 106 (235)
T PRK08084 47 YIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAW-------------F-----VPEVLEGMEQ--LSLVCIDNI 106 (235)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhh-------------h-----hHHHHHHhhh--CCEEEEeCh
Confidence 4999999999999999999987754444445554433211 0 0011222222 248999999
Q ss_pred cccC--HHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHH
Q 003088 741 EKAH--PDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELK 818 (849)
Q Consensus 741 d~l~--~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~ 818 (849)
+.+. +..+..|+.++.... ...+..+|+|++..+..+.
T Consensus 107 ~~~~~~~~~~~~lf~l~n~~~---------e~g~~~li~ts~~~p~~l~------------------------------- 146 (235)
T PRK08084 107 ECIAGDELWEMAIFDLYNRIL---------ESGRTRLLITGDRPPRQLN------------------------------- 146 (235)
T ss_pred hhhcCCHHHHHHHHHHHHHHH---------HcCCCeEEEeCCCChHHcC-------------------------------
Confidence 9985 445555555554311 0113457888886654322
Q ss_pred hhCChHHhhccc--cEEEcCCCCHHHHccccC
Q 003088 819 AYFRPELLNRID--EVVVFRSLEKAQVCQLPL 848 (849)
Q Consensus 819 ~~~~pell~R~d--~~i~f~pl~~~~~~~I~~ 848 (849)
.+.|+|.+|+. .++.+.|++.+++.+|++
T Consensus 147 -~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~ 177 (235)
T PRK08084 147 -LGLPDLASRLDWGQIYKLQPLSDEEKLQALQ 177 (235)
T ss_pred -cccHHHHHHHhCCceeeecCCCHHHHHHHHH
Confidence 14689999995 799999999988887753
No 387
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.87 E-value=1.1e-08 Score=119.29 Aligned_cols=180 Identities=13% Similarity=0.220 Sum_probs=111.2
Q ss_pred cCCCCccccHHHHHHHHHHHh--cCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhh------
Q 003088 287 ELIDPVIGRETEIQRIIQILC--RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM------ 358 (849)
Q Consensus 287 ~~l~~iiG~~~~i~~l~~~l~--~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~------ 358 (849)
..|+.++|....++++.+.+. .....+++|+|++||||+++|+++....... +.+++.+||..+-
T Consensus 201 ~~f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~-------~~pfv~inca~~~~~~~e~ 273 (520)
T PRK10820 201 SAFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRSPRG-------KKPFLALNCASIPDDVVES 273 (520)
T ss_pred ccccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHhCCCC-------CCCeEEeccccCCHHHHHH
Confidence 468999999998888887663 3456789999999999999999987765433 3455566654432
Q ss_pred --ccccccchHHH---HHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCC-----------
Q 003088 359 --AGAKERGELEA---RVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG----------- 422 (849)
Q Consensus 359 --~~~~~~g~~e~---~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~----------- 422 (849)
.|.. .|.+.. .-..+++ ...++.||||||+.| ....+..|..+++.+
T Consensus 274 elFG~~-~~~~~~~~~~~~g~~e---~a~~GtL~LdeI~~L-------------~~~~Q~~Ll~~l~~~~~~~~g~~~~~ 336 (520)
T PRK10820 274 ELFGHA-PGAYPNALEGKKGFFE---QANGGSVLLDEIGEM-------------SPRMQAKLLRFLNDGTFRRVGEDHEV 336 (520)
T ss_pred HhcCCC-CCCcCCcccCCCChhh---hcCCCEEEEeChhhC-------------CHHHHHHHHHHHhcCCcccCCCCcce
Confidence 1110 000000 0011222 234569999999999 456677777777643
Q ss_pred --CeEEEEccChHHH--HHHhhccHHHHhccccEEecCCCHH----HHHHHHHHHHHHHHhhcC---CccCHHHHHHHH
Q 003088 423 --ELQCIASTTQDEH--RTQFEKDKALARRFQPVLISEPSQE----DAVRILLGLREKYEAHHN---CKFTLEAINAAV 490 (849)
Q Consensus 423 --~i~vI~at~~~~~--~~~~~~d~al~~Rf~~i~~~~ps~~----e~~~iL~~~~~~~~~~~~---~~i~~~~l~~~a 490 (849)
++++|++|+.+-- ..--...+.|..|+..+.+..|+.. +...++..+..++....+ ..++++++..+.
T Consensus 337 ~~~vRiI~st~~~l~~l~~~g~f~~dL~~rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~~~L~ 415 (520)
T PRK10820 337 HVDVRVICATQKNLVELVQKGEFREDLYYRLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLT 415 (520)
T ss_pred eeeeEEEEecCCCHHHHHHcCCccHHHHhhcCeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHh
Confidence 3689998876531 1111234667788875555555444 444445555555544443 368888877653
No 388
>PRK04132 replication factor C small subunit; Provisional
Probab=98.86 E-value=5.9e-09 Score=125.11 Aligned_cols=127 Identities=23% Similarity=0.323 Sum_probs=95.8
Q ss_pred CCccceeec--CCCCchHHHHHHHHHHhcCC--CCceeEeeccccccccccccccCCCCCccccccCcchhHHHHh----
Q 003088 658 PTAAMLFCG--PTGVGKTELAKSLAACYFGS--ESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRR---- 729 (849)
Q Consensus 658 p~~~lL~~G--p~GtGKt~lA~~la~~l~~~--~~~~i~i~~~~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~i~~---- 729 (849)
|.-+-++.| |.+.|||++|++||+.+|+. +.+++.+|+++......+... +.++...
T Consensus 563 ~~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR~i---------------Ik~~a~~~~~~ 627 (846)
T PRK04132 563 PGYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGINVIREK---------------VKEFARTKPIG 627 (846)
T ss_pred CchhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHHHH---------------HHHHHhcCCcC
Confidence 444577889 99999999999999999875 457899999875332222211 1111111
Q ss_pred -CCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHh
Q 003088 730 -RPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAG 808 (849)
Q Consensus 730 -~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~ 808 (849)
.++.|+||||+|.|+..+|+.|++.||+ +..+++||++||....
T Consensus 628 ~~~~KVvIIDEaD~Lt~~AQnALLk~lEe-----------p~~~~~FILi~N~~~k------------------------ 672 (846)
T PRK04132 628 GASFKIIFLDEADALTQDAQQALRRTMEM-----------FSSNVRFILSCNYSSK------------------------ 672 (846)
T ss_pred CCCCEEEEEECcccCCHHHHHHHHHHhhC-----------CCCCeEEEEEeCChhh------------------------
Confidence 1347999999999999999999999997 3358899999997432
Q ss_pred HHHHHHHHHHhhCChHHhhccccEEEcCCCCHHHHcccc
Q 003088 809 MKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQLP 847 (849)
Q Consensus 809 ~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~I~ 847 (849)
+.+++.+|| ..+.|.|++.+++..++
T Consensus 673 ------------Ii~tIrSRC-~~i~F~~ls~~~i~~~L 698 (846)
T PRK04132 673 ------------IIEPIQSRC-AIFRFRPLRDEDIAKRL 698 (846)
T ss_pred ------------CchHHhhhc-eEEeCCCCCHHHHHHHH
Confidence 568899999 89999999988876543
No 389
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.85 E-value=7.2e-09 Score=113.21 Aligned_cols=156 Identities=17% Similarity=0.197 Sum_probs=93.3
Q ss_pred cccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCC-----ceeEee-ccccccccccc
Q 003088 632 IGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSES-----SMLRLD-MSEYMERHTVS 705 (849)
Q Consensus 632 ~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~-----~~i~i~-~~~~~~~~~~~ 705 (849)
.|+....+++.... | +-...+||+||+|+||+++|+.+|+.+..... ++-.+. |..+...+.++
T Consensus 4 PW~~~~w~~l~~~~-----~-----r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD 73 (325)
T PRK08699 4 PWHQEQWRQIAEHW-----E-----RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPD 73 (325)
T ss_pred CccHHHHHHHHHhc-----C-----CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCC
Confidence 56666666665441 1 11234999999999999999999999854221 221110 11111111111
Q ss_pred -cccCCC-----CC----ccccccCcchhHHHHhC----CCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecC
Q 003088 706 -KLIGSP-----PG----YVGYEEGGLLTEAIRRR----PFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFK 771 (849)
Q Consensus 706 -~l~g~~-----~g----~vg~~~~~~l~~~i~~~----~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~ 771 (849)
..+... .| .++.++...+.+.+... .+.|+++|+++.+++..+|.|++.||+. ..
T Consensus 74 ~~~~~p~~~~~~~g~~~~~I~id~iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep-----------~~ 142 (325)
T PRK08699 74 FYEITPLSDEPENGRKLLQIKIDAVREIIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEP-----------PP 142 (325)
T ss_pred EEEEecccccccccccCCCcCHHHHHHHHHHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHhC-----------cC
Confidence 111110 01 12222223344444433 3579999999999999999999999983 13
Q ss_pred CeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHHHcc
Q 003088 772 NALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQ 845 (849)
Q Consensus 772 ~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~ 845 (849)
++.||++|+.... +.|.+.+|| ..+.|+|++.+++..
T Consensus 143 ~~~~Ilvth~~~~------------------------------------ll~ti~SRc-~~~~~~~~~~~~~~~ 179 (325)
T PRK08699 143 QVVFLLVSHAADK------------------------------------VLPTIKSRC-RKMVLPAPSHEEALA 179 (325)
T ss_pred CCEEEEEeCChHh------------------------------------ChHHHHHHh-hhhcCCCCCHHHHHH
Confidence 4556666654211 567788888 788899988887654
No 390
>PRK08181 transposase; Validated
Probab=98.84 E-value=1.1e-08 Score=108.55 Aligned_cols=165 Identities=15% Similarity=0.214 Sum_probs=89.3
Q ss_pred cCCCCCCcchhHHhhhhhhHHHHhhcCCCCccccHHHHHHHHHH-HhcCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCC
Q 003088 262 LKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQI-LCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEV 340 (849)
Q Consensus 262 ~~~~~~~~~~~l~~~~~~l~~~~~~~~l~~iiG~~~~i~~l~~~-l~~~~~~niLL~GppGtGKT~la~~la~~l~~~~~ 340 (849)
++.+++|...+++.|..+..... . ...+..+..+ -+.....|++|+||||||||+++.++++.+...
T Consensus 66 lk~A~~p~~~tle~fd~~~~~~~---------~-~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~-- 133 (269)
T PRK08181 66 LAEAHLPPGKTLDSFDFEAVPMV---------S-KAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIEN-- 133 (269)
T ss_pred HHHCCCCCCCCHhhCCccCCCCC---------C-HHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHHc--
Confidence 45556666677888776543211 1 1223333322 123466789999999999999999999988654
Q ss_pred CccccCCeEEEeehhhhhccc---cccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhh
Q 003088 341 PVFLLSKRIMSLDMGLLMAGA---KERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKP 417 (849)
Q Consensus 341 p~~~~~~~~~~l~~~~~~~~~---~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~ 417 (849)
+..++.++...++..- ...+. +..+++.+.+ ..+|+|||++.+.... .....+.+++..
T Consensus 134 -----g~~v~f~~~~~L~~~l~~a~~~~~----~~~~l~~l~~--~dLLIIDDlg~~~~~~-------~~~~~Lf~lin~ 195 (269)
T PRK08181 134 -----GWRVLFTRTTDLVQKLQVARRELQ----LESAIAKLDK--FDLLILDDLAYVTKDQ-------AETSVLFELISA 195 (269)
T ss_pred -----CCceeeeeHHHHHHHHHHHHhCCc----HHHHHHHHhc--CCEEEEeccccccCCH-------HHHHHHHHHHHH
Confidence 4555555555544211 11122 2233333333 3599999999873211 112234444444
Q ss_pred hhcCCCeEEEEccCh--HHHHHHhh---ccHHHHhcc----ccEEecCCC
Q 003088 418 SLGRGELQCIASTTQ--DEHRTQFE---KDKALARRF----QPVLISEPS 458 (849)
Q Consensus 418 ~le~~~i~vI~at~~--~~~~~~~~---~d~al~~Rf----~~i~~~~ps 458 (849)
..+++ .+|.|||. .+|...+. +-.++.+|+ ..|.|.-.|
T Consensus 196 R~~~~--s~IiTSN~~~~~w~~~~~D~~~a~aildRL~h~~~~i~~~g~s 243 (269)
T PRK08181 196 RYERR--SILITANQPFGEWNRVFPDPAMTLAAVDRLVHHATIFEMNVES 243 (269)
T ss_pred HHhCC--CEEEEcCCCHHHHHHhcCCccchhhHHHhhhcCceEEecCCcc
Confidence 33443 45666654 34444332 223555655 246665544
No 391
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.84 E-value=4.6e-08 Score=100.53 Aligned_cols=114 Identities=21% Similarity=0.230 Sum_probs=84.7
Q ss_pred CeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCCC-eEEEEccCh-------HHHHHHhhccHHHHhccccEEe
Q 003088 383 DVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGE-LQCIASTTQ-------DEHRTQFEKDKALARRFQPVLI 454 (849)
Q Consensus 383 ~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~~-i~vI~at~~-------~~~~~~~~~d~al~~Rf~~i~~ 454 (849)
|+||||||+|.| +.+....|+..+++.- -++|.+||. .+|+.-..+.-.|..|.-.|.-
T Consensus 289 pGVLFIDEvHML-------------DIEcFsFlNrAlE~d~~PiiimaTNrgit~iRGTn~~SphGiP~D~lDR~lII~t 355 (454)
T KOG2680|consen 289 PGVLFIDEVHML-------------DIECFSFLNRALENDMAPIIIMATNRGITRIRGTNYRSPHGIPIDLLDRMLIIST 355 (454)
T ss_pred cceEEEeeehhh-------------hhHHHHHHHHHhhhccCcEEEEEcCCceEEeecCCCCCCCCCcHHHhhhhheeec
Confidence 689999999999 6778889999998643 244444543 2333445677889999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhcccccCcchhhHHHHHHHHhhHHH
Q 003088 455 SEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAH 518 (849)
Q Consensus 455 ~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~~~r~~p~~ai~ll~~a~~~~~ 518 (849)
.+++.++..+||+..++ .+++.+.+++++.+..+....- -..++.|+..+...+.
T Consensus 356 ~py~~~d~~~IL~iRc~----EEdv~m~~~A~d~Lt~i~~~ts-----LRYai~Lit~a~~~~~ 410 (454)
T KOG2680|consen 356 QPYTEEDIKKILRIRCQ----EEDVEMNPDALDLLTKIGEATS-----LRYAIHLITAASLVCL 410 (454)
T ss_pred ccCcHHHHHHHHHhhhh----hhccccCHHHHHHHHHhhhhhh-----HHHHHHHHHHHHHHHH
Confidence 99999999999998887 7789999999998887654321 1345666666554443
No 392
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.83 E-value=6.4e-08 Score=105.44 Aligned_cols=161 Identities=20% Similarity=0.269 Sum_probs=105.4
Q ss_pred CCCccccHHHHHHHHHHHhcCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCe--------------------
Q 003088 289 IDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKR-------------------- 348 (849)
Q Consensus 289 l~~iiG~~~~i~~l~~~l~~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~-------------------- 348 (849)
|..++|++.....|.--.-.....++|+-|+.|+||||++++|+..|....+- .+|+
T Consensus 16 f~aivGqd~lk~aL~l~av~P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V---~gc~f~cdP~~P~~~c~~c~~k~~ 92 (423)
T COG1239 16 FTAIVGQDPLKLALGLNAVDPQIGGALIAGEKGTAKSTLARALADLLPEIEVV---IGCPFNCDPDDPEEMCDECRAKGD 92 (423)
T ss_pred hhhhcCchHHHHHHhhhhcccccceeEEecCCCccHHHHHHHHHHhCCcccee---cCCCCCCCCCChhhhhHHHHhhcc
Confidence 44678998777666655555677889999999999999999999988542210 1221
Q ss_pred -------------EEEeehhhhhccccccc--hHHHHHHHHHH-----HHHhcCCeEEEEcCcchhhhCCCCCCCCCCcc
Q 003088 349 -------------IMSLDMGLLMAGAKERG--ELEARVTTLIS-----EIQKSGDVILFIDEVHTLIGSGTVGRGNKGTG 408 (849)
Q Consensus 349 -------------~~~l~~~~~~~~~~~~g--~~e~~l~~l~~-----~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~ 408 (849)
++.+-++... .+-.| +.+..++.=.+ .+...+.+||||||+..| .
T Consensus 93 e~~~~~~~~r~v~~v~lPl~ate--DrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL-------------~ 157 (423)
T COG1239 93 ELEWLPREKRKVPFVALPLGATE--DRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLL-------------D 157 (423)
T ss_pred ccccccccceecceecCCCccch--hhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccc-------------c
Confidence 1111111100 00011 11111111000 011244579999999999 4
Q ss_pred HHHHHHHhhhhcCC---------------CeEEEEccChHHHHHHhhccHHHHhccc-cEEecCC-CHHHHHHHHHHHHH
Q 003088 409 LDISNLLKPSLGRG---------------ELQCIASTTQDEHRTQFEKDKALARRFQ-PVLISEP-SQEDAVRILLGLRE 471 (849)
Q Consensus 409 ~~~~~~L~~~le~~---------------~i~vI~at~~~~~~~~~~~d~al~~Rf~-~i~~~~p-s~~e~~~iL~~~~~ 471 (849)
..+++.|+..++.| ++++|||+|+.+ =++-+.|+.||. .|.+..| +.+++++|.+....
T Consensus 158 d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEe----GeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~~~ 233 (423)
T COG1239 158 DHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEE----GELRPQLLDRFGLEVDTHYPLDLEERVEIIRRRLA 233 (423)
T ss_pred HHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccc----cccchhhHhhhcceeeccCCCCHHHHHHHHHHHHH
Confidence 56889999888764 368999999985 377899999997 5888777 88899999877543
No 393
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.82 E-value=3.8e-08 Score=117.53 Aligned_cols=162 Identities=15% Similarity=0.164 Sum_probs=99.9
Q ss_pred CCccccHHHHHHHHHHHhcCC---------------------CCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCe
Q 003088 290 DPVIGRETEIQRIIQILCRRT---------------------KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKR 348 (849)
Q Consensus 290 ~~iiG~~~~i~~l~~~l~~~~---------------------~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~ 348 (849)
..|.|.+..++.++-.|.... ..||||+|+||||||.+|+.+++...... ...+..
T Consensus 450 P~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~---ytsG~~ 526 (915)
T PTZ00111 450 PSIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSI---YTSGKS 526 (915)
T ss_pred CeEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccc---cCCCCC
Confidence 358899988887665553321 23899999999999999999998653321 111222
Q ss_pred EEEeehhhhhc-cccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCC-----
Q 003088 349 IMSLDMGLLMA-GAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG----- 422 (849)
Q Consensus 349 ~~~l~~~~~~~-~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~----- 422 (849)
...+.+..... -....|++.... ..+..+.+++|+|||++.| ....+..|..+|+.+
T Consensus 527 ~s~vgLTa~~~~~d~~tG~~~le~----GaLvlAdgGtL~IDEidkm-------------s~~~Q~aLlEaMEqqtIsI~ 589 (915)
T PTZ00111 527 SSSVGLTASIKFNESDNGRAMIQP----GAVVLANGGVCCIDELDKC-------------HNESRLSLYEVMEQQTVTIA 589 (915)
T ss_pred CccccccchhhhcccccCcccccC----CcEEEcCCCeEEecchhhC-------------CHHHHHHHHHHHhCCEEEEe
Confidence 23333222211 000011110000 0112234579999999999 455677777777643
Q ss_pred ----------CeEEEEccChHHHH--------HHhhccHHHHhcccc--EEecCCCHHHHHHHHHHHHH
Q 003088 423 ----------ELQCIASTTQDEHR--------TQFEKDKALARRFQP--VLISEPSQEDAVRILLGLRE 471 (849)
Q Consensus 423 ----------~i~vI~at~~~~~~--------~~~~~d~al~~Rf~~--i~~~~ps~~e~~~iL~~~~~ 471 (849)
++.||+|+|+..-+ .-+.+.++|.+||+. +.++.|+.+.=..|...++.
T Consensus 590 KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLIf~l~D~~d~~~D~~lA~hI~~ 658 (915)
T PTZ00111 590 KAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQDTDQLISLSIAK 658 (915)
T ss_pred cCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcEEEEecCCCChHHHHHHHHHHHH
Confidence 46899999985321 346778999999984 67788887766666666554
No 394
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.82 E-value=6.4e-10 Score=102.21 Aligned_cols=108 Identities=23% Similarity=0.303 Sum_probs=58.1
Q ss_pred CCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeeh------hhhhcccccc---chHHHHHHHHHHHHHhcCC
Q 003088 313 NPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM------GLLMAGAKER---GELEARVTTLISEIQKSGD 383 (849)
Q Consensus 313 niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~------~~~~~~~~~~---g~~e~~l~~l~~~~~~~~~ 383 (849)
|+||.|+||+|||++|+++|+.+. ..+..+.+ ++++...-+. ++++-+-.-++ .
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~----------~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif-------~ 63 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLG----------LSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIF-------T 63 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT------------EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT--------S
T ss_pred CEeeECCCccHHHHHHHHHHHHcC----------CceeEEEecCCCCcccceeeeeeccCCCeeEeecChhh-------h
Confidence 689999999999999999999983 23322222 1111110000 11100001111 2
Q ss_pred eEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCCC-------------eEEEEccChHHHHHHhhccHHHHhccc
Q 003088 384 VILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGE-------------LQCIASTTQDEHRTQFEKDKALARRFQ 450 (849)
Q Consensus 384 ~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~~-------------i~vI~at~~~~~~~~~~~d~al~~Rf~ 450 (849)
.|+++|||++. ....+..|+..++.+. ++||+|.|+.++...+.+..++..||-
T Consensus 64 ~ill~DEiNra-------------ppktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF~ 130 (131)
T PF07726_consen 64 NILLADEINRA-------------PPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRFM 130 (131)
T ss_dssp SEEEEETGGGS--------------HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTSS
T ss_pred ceeeecccccC-------------CHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhcccc
Confidence 49999999998 4566888888886433 578999999998888999999999984
No 395
>PRK06526 transposase; Provisional
Probab=98.82 E-value=8.8e-09 Score=108.63 Aligned_cols=163 Identities=24% Similarity=0.328 Sum_probs=90.3
Q ss_pred ccCCCCCCcchhHHhhhhhhHHHHhhcCCCCccccHHHHHHHHHHHhcCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCC
Q 003088 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEV 340 (849)
Q Consensus 261 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~l~~iiG~~~~i~~l~~~l~~~~~~niLL~GppGtGKT~la~~la~~l~~~~~ 340 (849)
+++.+++|...++++|..+...... ...+..+...-+.....|++|+||||||||++|.+|+.++...
T Consensus 58 ~lk~a~~p~~~~le~fd~~~~~~~~----------~~~~~~l~~~~fi~~~~nlll~Gp~GtGKThLa~al~~~a~~~-- 125 (254)
T PRK06526 58 RIRAARFPARKSLEEFDFDHQRSLK----------RDTIAHLGTLDFVTGKENVVFLGPPGTGKTHLAIGLGIRACQA-- 125 (254)
T ss_pred HHHhCCCCCCCChhhccCccCCCcc----------hHHHHHHhcCchhhcCceEEEEeCCCCchHHHHHHHHHHHHHC--
Confidence 4556677777888888766432211 1234444443344567899999999999999999999988654
Q ss_pred CccccCCeEEEeehhhhhcc---ccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhh
Q 003088 341 PVFLLSKRIMSLDMGLLMAG---AKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKP 417 (849)
Q Consensus 341 p~~~~~~~~~~l~~~~~~~~---~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~ 417 (849)
+..++...+..++.. ....+..... +..+. +..+|+|||++.+. ......+.|..
T Consensus 126 -----g~~v~f~t~~~l~~~l~~~~~~~~~~~~----l~~l~--~~dlLIIDD~g~~~-----------~~~~~~~~L~~ 183 (254)
T PRK06526 126 -----GHRVLFATAAQWVARLAAAHHAGRLQAE----LVKLG--RYPLLIVDEVGYIP-----------FEPEAANLFFQ 183 (254)
T ss_pred -----CCchhhhhHHHHHHHHHHHHhcCcHHHH----HHHhc--cCCEEEEcccccCC-----------CCHHHHHHHHH
Confidence 333333333333211 1112222222 22222 34699999999882 22333444444
Q ss_pred hh----cCCCeEEEEccC--hHHHHHHhhccH----HHHhcc----ccEEecCCCHH
Q 003088 418 SL----GRGELQCIASTT--QDEHRTQFEKDK----ALARRF----QPVLISEPSQE 460 (849)
Q Consensus 418 ~l----e~~~i~vI~at~--~~~~~~~~~~d~----al~~Rf----~~i~~~~ps~~ 460 (849)
++ +++ .+|.+|| ..+|...+. |+ ++.+|+ ..|.|...|..
T Consensus 184 li~~r~~~~--s~IitSn~~~~~w~~~~~-d~~~a~ai~dRl~~~~~~i~~~g~s~R 237 (254)
T PRK06526 184 LVSSRYERA--SLIVTSNKPFGRWGEVFG-DDVVAAAMIDRLVHHAEVISLKGDSYR 237 (254)
T ss_pred HHHHHHhcC--CEEEEcCCCHHHHHHHcC-ChHHHHHHHHHHhcCceEEeecCCCcc
Confidence 44 333 3555555 344444433 32 345555 24666665544
No 396
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.81 E-value=9.8e-08 Score=112.36 Aligned_cols=123 Identities=21% Similarity=0.266 Sum_probs=85.9
Q ss_pred CCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCC-----------------------CeEEEEccChHHHHHH
Q 003088 382 GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-----------------------ELQCIASTTQDEHRTQ 438 (849)
Q Consensus 382 ~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~-----------------------~i~vI~at~~~~~~~~ 438 (849)
++++|||||++.| ...++..|+.+|+.+ ++++|++++.+. .
T Consensus 226 nGGtL~LDei~~L-------------~~~~q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~~l---l 289 (637)
T PRK13765 226 HKGVLFIDEINTL-------------DLESQQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNLDA---L 289 (637)
T ss_pred CCcEEEEeChHhC-------------CHHHHHHHHHHHHhCCEEecccccccccccCCCcceeeeeEEEEecCcCH---H
Confidence 3578999999988 345677787777533 357899999864 3
Q ss_pred hhccHHHHhcccc----EEecC---CCHHHHHHHHHHHHHHHHhh-cCCccCHHHHHHHHHhhhcccccCc---c-hhhH
Q 003088 439 FEKDKALARRFQP----VLISE---PSQEDAVRILLGLREKYEAH-HNCKFTLEAINAAVHLSARYISDRY---L-PDKA 506 (849)
Q Consensus 439 ~~~d~al~~Rf~~----i~~~~---ps~~e~~~iL~~~~~~~~~~-~~~~i~~~~l~~~a~ls~~~~~~r~---~-p~~a 506 (849)
..+++.|..||.. +.|.. -+.+.+.++++.+.+.+... ....++.+++..+.+.+.|...+|. + ....
T Consensus 290 ~~~dpdL~~rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R~ag~r~~lsl~~~~l 369 (637)
T PRK13765 290 ENMHPALRSRIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKRRAGRKGHLTLKLRDL 369 (637)
T ss_pred HhhhHHHHHHhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHhCCccccccCHHHH
Confidence 4568999999952 55543 25666777776666555433 2347999999999998888766654 2 4567
Q ss_pred HHHHHHHhhHHHHh
Q 003088 507 IDLVDEAGSRAHIE 520 (849)
Q Consensus 507 i~ll~~a~~~~~~~ 520 (849)
.+++.+|...++.+
T Consensus 370 ~~l~r~a~~~a~~~ 383 (637)
T PRK13765 370 GGLVRVAGDIARSE 383 (637)
T ss_pred HHHHHHHHHHHHhh
Confidence 78888887776644
No 397
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.81 E-value=1.8e-08 Score=107.46 Aligned_cols=156 Identities=19% Similarity=0.252 Sum_probs=98.2
Q ss_pred ccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCC----ceeEe-eccccccccccccc
Q 003088 633 GQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSES----SMLRL-DMSEYMERHTVSKL 707 (849)
Q Consensus 633 Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~----~~i~i-~~~~~~~~~~~~~l 707 (849)
+|+.+++.+..++...+. ...+||+|| +||+++|+.+|+.+...+. ++-.+ .|..+.....++-.
T Consensus 6 ~q~~~~~~L~~~~~~~rl--------~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~ 75 (290)
T PRK07276 6 KQPKVFQRFQTILEQDRL--------NHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVT 75 (290)
T ss_pred HHHHHHHHHHHHHHcCCc--------ceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCee
Confidence 466778888777776432 234999996 6899999999998865431 11111 11111111111111
Q ss_pred cCCCCC-ccccccCcchhHHHHh----CCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCC
Q 003088 708 IGSPPG-YVGYEEGGLLTEAIRR----RPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVG 782 (849)
Q Consensus 708 ~g~~~g-~vg~~~~~~l~~~i~~----~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~ 782 (849)
+=.|.| .++.++...+...+.. +++.|++||++|+|++...|.||+.||+ +..+++||++|+..
T Consensus 76 ~i~p~~~~I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m~~~AaNaLLKtLEE-----------Pp~~t~~iL~t~~~ 144 (290)
T PRK07276 76 VIEPQGQVIKTDTIRELVKNFSQSGYEGKQQVFIIKDADKMHVNAANSLLKVIEE-----------PQSEIYIFLLTNDE 144 (290)
T ss_pred eecCCCCcCCHHHHHHHHHHHhhCcccCCcEEEEeehhhhcCHHHHHHHHHHhcC-----------CCCCeEEEEEECCh
Confidence 111211 1222322233333333 3357999999999999999999999999 45678888887653
Q ss_pred chhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHHHcccc
Q 003088 783 STTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQLP 847 (849)
Q Consensus 783 ~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~I~ 847 (849)
.. +.|.+.+|| ..|.|++ ..+++.+++
T Consensus 145 ~~------------------------------------lLpTI~SRc-q~i~f~~-~~~~~~~~L 171 (290)
T PRK07276 145 NK------------------------------------VLPTIKSRT-QIFHFPK-NEAYLIQLL 171 (290)
T ss_pred hh------------------------------------CchHHHHcc-eeeeCCC-cHHHHHHHH
Confidence 21 678999999 8888977 666665543
No 398
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=2.7e-09 Score=117.43 Aligned_cols=148 Identities=22% Similarity=0.273 Sum_probs=90.5
Q ss_pred CCCCccccHHHHHHHHHHHhcCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEE-----------------
Q 003088 288 LIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIM----------------- 350 (849)
Q Consensus 288 ~l~~iiG~~~~i~~l~~~l~~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~----------------- 350 (849)
.|.||+|++...+.+..... ...|+||+||||||||++|+.+...+.....+..+.-..+.
T Consensus 177 D~~DV~GQ~~AKrAleiAAA--GgHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~g~~~~~~~~~~~rP 254 (490)
T COG0606 177 DFKDVKGQEQAKRALEIAAA--GGHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLAGDLHEGCPLKIHRP 254 (490)
T ss_pred chhhhcCcHHHHHHHHHHHh--cCCcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhcccccccCccceeCC
Confidence 46799999988887765543 45699999999999999999887665332222211111111
Q ss_pred ------EeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCCCe
Q 003088 351 ------SLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGEL 424 (849)
Q Consensus 351 ------~l~~~~~~~~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~~i 424 (849)
+..+.+++.|.... --.++....++||||||+-.+ ...+.+.|+.-||+|.+
T Consensus 255 Fr~PHHsaS~~aLvGGG~~p---------~PGeIsLAH~GVLFLDElpef-------------~~~iLe~LR~PLE~g~i 312 (490)
T COG0606 255 FRAPHHSASLAALVGGGGVP---------RPGEISLAHNGVLFLDELPEF-------------KRSILEALREPLENGKI 312 (490)
T ss_pred ccCCCccchHHHHhCCCCCC---------CCCceeeecCCEEEeeccchh-------------hHHHHHHHhCccccCcE
Confidence 11222222221100 001122345679999999988 56889999999997764
Q ss_pred ---------------EEEEccChH--------------------HHHHHhhccHHHHhccc-cEEecCCCHHH
Q 003088 425 ---------------QCIASTTQD--------------------EHRTQFEKDKALARRFQ-PVLISEPSQED 461 (849)
Q Consensus 425 ---------------~vI~at~~~--------------------~~~~~~~~d~al~~Rf~-~i~~~~ps~~e 461 (849)
.+|++||+. .|.+ ++...|++|++ .++++.++..+
T Consensus 313 ~IsRa~~~v~ypa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~--klSgp~lDRiDl~vev~~~~~~e 383 (490)
T COG0606 313 IISRAGSKVTYPARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLN--KLSGPFLDRIDLMVEVPRLSAGE 383 (490)
T ss_pred EEEEcCCeeEEeeeeEEhhhcCCCCccCCCCCCCCcCCCHHHHHHHHH--HhhHHHHhhhhheecccCCCHHH
Confidence 456776642 2322 44566777776 46666665444
No 399
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.80 E-value=9.1e-08 Score=112.91 Aligned_cols=161 Identities=21% Similarity=0.237 Sum_probs=98.4
Q ss_pred cCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehh---hhhccccccchHHHHHHH---HHH--HHH
Q 003088 308 RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMG---LLMAGAKERGELEARVTT---LIS--EIQ 379 (849)
Q Consensus 308 ~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~---~~~~~~~~~g~~e~~l~~---l~~--~~~ 379 (849)
.+...++||.|+||||||++|++|+..+... . +++.+..+ ..+.|.- +++..+.. .++ .+.
T Consensus 13 ~p~~g~vLl~G~~GtgKs~lar~l~~~~~~~-~-------pfv~i~~~~t~d~L~G~i---dl~~~~~~g~~~~~~G~L~ 81 (589)
T TIGR02031 13 DPSLGGVAIRARAGTGKTALARALAEILPPI-M-------PFVELPLGVTEDRLIGGI---DVEESLAGGQRVTQPGLLD 81 (589)
T ss_pred CCCcceEEEEcCCCcHHHHHHHHHHHhCCcC-C-------CeEecCcccchhhcccch---hhhhhhhcCcccCCCCCee
Confidence 3446799999999999999999999877431 1 22222211 1111110 01110100 000 011
Q ss_pred hcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCCC---------------eEEEEccChHHHHHHhhccHH
Q 003088 380 KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGE---------------LQCIASTTQDEHRTQFEKDKA 444 (849)
Q Consensus 380 ~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~~---------------i~vI~at~~~~~~~~~~~d~a 444 (849)
...+++|||||++.+ ....++.|..+|+.+. +.+|+++|..+... .+.++
T Consensus 82 ~A~~GvL~lDEi~rl-------------~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g--~L~~~ 146 (589)
T TIGR02031 82 EAPRGVLYVDMANLL-------------DDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGG--GLPDH 146 (589)
T ss_pred eCCCCcEeccchhhC-------------CHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccC--CCCHH
Confidence 234569999999999 5677888888887553 68899888765222 67799
Q ss_pred HHhcccc-EEec-CCCHHHHHHHHHHHHHHHH-------------------hhcCCccCHHHHHHHHHhhh
Q 003088 445 LARRFQP-VLIS-EPSQEDAVRILLGLREKYE-------------------AHHNCKFTLEAINAAVHLSA 494 (849)
Q Consensus 445 l~~Rf~~-i~~~-~ps~~e~~~iL~~~~~~~~-------------------~~~~~~i~~~~l~~~a~ls~ 494 (849)
|..||.. |.+. .|+.+++.+|++.....+. ....+.++++.+.+++.++-
T Consensus 147 LldRf~l~v~~~~~~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~ 217 (589)
T TIGR02031 147 LLDRLALHVSLEDVASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAA 217 (589)
T ss_pred HHHhccCeeecCCCCCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHH
Confidence 9999974 5554 4577888998877542221 12345666666666666553
No 400
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.79 E-value=1.9e-08 Score=103.29 Aligned_cols=79 Identities=22% Similarity=0.412 Sum_probs=64.3
Q ss_pred eEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCchhhhccc-CCccccccccCCcccHHhHHH
Q 003088 733 TLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKGR-HGSIGFLLEDNESTSYAGMKT 811 (849)
Q Consensus 733 ~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~~~~-~~~~gf~~~~~~~~~~~~~~~ 811 (849)
|||||||++.++-+.+..|.+++|+- + ..++|++||.+...+..-+ .++.|
T Consensus 290 GVLFIDEvHMLDIEcFsFlNrAlE~d-----------~-~PiiimaTNrgit~iRGTn~~SphG---------------- 341 (454)
T KOG2680|consen 290 GVLFIDEVHMLDIECFSFLNRALEND-----------M-APIIIMATNRGITRIRGTNYRSPHG---------------- 341 (454)
T ss_pred ceEEEeeehhhhhHHHHHHHHHhhhc-----------c-CcEEEEEcCCceEEeecCCCCCCCC----------------
Confidence 79999999999999999999999872 1 3578899999876554322 12233
Q ss_pred HHHHHHHhhCChHHhhccccEEEcCCCCHHHHccccCC
Q 003088 812 LVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQLPLI 849 (849)
Q Consensus 812 ~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~I~~l 849 (849)
++-+|++|+ .+|.-.|++++++.+|+++
T Consensus 342 ---------iP~D~lDR~-lII~t~py~~~d~~~IL~i 369 (454)
T KOG2680|consen 342 ---------IPIDLLDRM-LIISTQPYTEEDIKKILRI 369 (454)
T ss_pred ---------CcHHHhhhh-heeecccCcHHHHHHHHHh
Confidence 778999999 8999999999999999864
No 401
>PRK12377 putative replication protein; Provisional
Probab=98.79 E-value=2.5e-08 Score=104.48 Aligned_cols=115 Identities=17% Similarity=0.219 Sum_probs=68.4
Q ss_pred CCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhccccc---cchHHHHHHHHHHHHHhcCCeEE
Q 003088 310 TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKE---RGELEARVTTLISEIQKSGDVIL 386 (849)
Q Consensus 310 ~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~~~~~---~g~~e~~l~~l~~~~~~~~~~IL 386 (849)
...+++|+||||||||++|.+|++.+... +..++.+++..+...-+. .++. ...+++.+.+ ..+|
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~~~-------g~~v~~i~~~~l~~~l~~~~~~~~~---~~~~l~~l~~--~dLL 167 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLLAK-------GRSVIVVTVPDVMSRLHESYDNGQS---GEKFLQELCK--VDLL 167 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHHHc-------CCCeEEEEHHHHHHHHHHHHhccch---HHHHHHHhcC--CCEE
Confidence 34689999999999999999999998654 445555555554421110 1111 1233444433 3599
Q ss_pred EEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhc---CCCeEEEEccChH--HHHHHhhccHHHHhcc
Q 003088 387 FIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG---RGELQCIASTTQD--EHRTQFEKDKALARRF 449 (849)
Q Consensus 387 fIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le---~~~i~vI~at~~~--~~~~~~~~d~al~~Rf 449 (849)
+|||++.... +...++.|..+++ +....+|.|||.. ++.+ .+...+.+|+
T Consensus 168 iIDDlg~~~~-----------s~~~~~~l~~ii~~R~~~~~ptiitSNl~~~~l~~--~~~~ri~dRl 222 (248)
T PRK12377 168 VLDEIGIQRE-----------TKNEQVVLNQIIDRRTASMRSVGMLTNLNHEAMST--LLGERVMDRM 222 (248)
T ss_pred EEcCCCCCCC-----------CHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHH--HhhHHHHHHH
Confidence 9999977621 2233456666655 2345667777743 3333 2334555555
No 402
>PRK05642 DNA replication initiation factor; Validated
Probab=98.77 E-value=3.6e-08 Score=103.19 Aligned_cols=126 Identities=17% Similarity=0.306 Sum_probs=87.2
Q ss_pred cceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccccccCCCCCccccccCcchhHHHHhCCCeEEEEeCc
Q 003088 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRRRPFTLLLLDEI 740 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~i~~~~~~vl~lDEi 740 (849)
+++|+||+|||||++++++++.+...+..++.+++.++... ...+.+.+... -+|+||++
T Consensus 47 ~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~------------------~~~~~~~~~~~--d~LiiDDi 106 (234)
T PRK05642 47 LIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR------------------GPELLDNLEQY--ELVCLDDL 106 (234)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh------------------hHHHHHhhhhC--CEEEEech
Confidence 48999999999999999999877544556777777655321 01233334433 39999999
Q ss_pred cccC--HHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHH
Q 003088 741 EKAH--PDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELK 818 (849)
Q Consensus 741 d~l~--~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~ 818 (849)
+... +..+..|+.+++.-. ..+..+|+|++..+..+.
T Consensus 107 ~~~~~~~~~~~~Lf~l~n~~~----------~~g~~ilits~~~p~~l~------------------------------- 145 (234)
T PRK05642 107 DVIAGKADWEEALFHLFNRLR----------DSGRRLLLAASKSPRELP------------------------------- 145 (234)
T ss_pred hhhcCChHHHHHHHHHHHHHH----------hcCCEEEEeCCCCHHHcC-------------------------------
Confidence 9774 466777888886511 113457888887654332
Q ss_pred hhCChHHhhccc--cEEEcCCCCHHHHccccC
Q 003088 819 AYFRPELLNRID--EVVVFRSLEKAQVCQLPL 848 (849)
Q Consensus 819 ~~~~pell~R~d--~~i~f~pl~~~~~~~I~~ 848 (849)
.+.|+|.+||. .++.+.|++.+++..|++
T Consensus 146 -~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~ 176 (234)
T PRK05642 146 -IKLPDLKSRLTLALVFQMRGLSDEDKLRALQ 176 (234)
T ss_pred -ccCccHHHHHhcCeeeecCCCCHHHHHHHHH
Confidence 14688999994 677889999988887764
No 403
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.75 E-value=5e-08 Score=112.55 Aligned_cols=183 Identities=22% Similarity=0.321 Sum_probs=111.1
Q ss_pred CCCCccccHHHHHHHHHHHhc--CCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhc------
Q 003088 288 LIDPVIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA------ 359 (849)
Q Consensus 288 ~l~~iiG~~~~i~~l~~~l~~--~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~------ 359 (849)
.+..++|....++.+.+.+.. ....+++|+|++||||+++|+++....... +.+++.+++..+..
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~-------~~~~v~v~c~~~~~~~~~~~ 209 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLSDRK-------DKRFVAINCAAIPENLLESE 209 (445)
T ss_pred cccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhCCcC-------CCCeEEEECCCCChHHHHHH
Confidence 355688888888777766543 455789999999999999999998765433 34566666654321
Q ss_pred --cccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCC-------------Ce
Q 003088 360 --GAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-------------EL 424 (849)
Q Consensus 360 --~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~-------------~i 424 (849)
|. ..|.+....+.....+....+++|||||++.| ...++..|..+++.+ ++
T Consensus 210 lfg~-~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l-------------~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~ 275 (445)
T TIGR02915 210 LFGY-EKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDL-------------PLNLQAKLLRFLQERVIERLGGREEIPVDV 275 (445)
T ss_pred hcCC-CCCCcCCCccCCCCceeECCCCEEEEechhhC-------------CHHHHHHHHHHHhhCeEEeCCCCceeeece
Confidence 00 00000000000011122345679999999999 567787888777643 46
Q ss_pred EEEEccChHHHH--HHhhccHHHHhccccEEecCCCHHHHH----HHHHHHHHHHHhhcC---CccCHHHHHHHHH
Q 003088 425 QCIASTTQDEHR--TQFEKDKALARRFQPVLISEPSQEDAV----RILLGLREKYEAHHN---CKFTLEAINAAVH 491 (849)
Q Consensus 425 ~vI~at~~~~~~--~~~~~d~al~~Rf~~i~~~~ps~~e~~----~iL~~~~~~~~~~~~---~~i~~~~l~~~a~ 491 (849)
++|++|+.+--. ..-...+.|..||..+.+..|+..+|. .+++.+++++....+ ..++++++..+..
T Consensus 276 rii~~~~~~l~~~~~~~~~~~~L~~~l~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~ 351 (445)
T TIGR02915 276 RIVCATNQDLKRMIAEGTFREDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEA 351 (445)
T ss_pred EEEEecCCCHHHHHHcCCccHHHHHHhccceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHh
Confidence 889988865311 111334567778876555555544444 455555555544333 4688888876644
No 404
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.75 E-value=1.1e-07 Score=103.95 Aligned_cols=139 Identities=19% Similarity=0.205 Sum_probs=93.2
Q ss_pred CCCCeEeCCCCChHHHHHHHHHHHhhhCCC-Cc--cc------------cCCeEEEeehhhh--hccccccchHHHHHHH
Q 003088 311 KNNPILLGESGVGKTAIAEGLAIRIVQAEV-PV--FL------------LSKRIMSLDMGLL--MAGAKERGELEARVTT 373 (849)
Q Consensus 311 ~~niLL~GppGtGKT~la~~la~~l~~~~~-p~--~~------------~~~~~~~l~~~~~--~~~~~~~g~~e~~l~~ 373 (849)
...+||+||+|+|||++|+.+|+.+.+... +. .. .+..++.++...- ..|.+...-..+.++.
T Consensus 21 ~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~iR~ 100 (325)
T PRK08699 21 PNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAVRE 100 (325)
T ss_pred ceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHHHH
Confidence 334789999999999999999999875321 10 11 1123333322110 0010000112445666
Q ss_pred HHHHHHh----cCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCC--CeEEEEccChHHHHHHhhccHHHHh
Q 003088 374 LISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG--ELQCIASTTQDEHRTQFEKDKALAR 447 (849)
Q Consensus 374 l~~~~~~----~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~--~i~vI~at~~~~~~~~~~~d~al~~ 447 (849)
+.+.+.. ++..|++||+++.| +..+++.|+..++.. ...+|.+|...+ .+.+.+++
T Consensus 101 l~~~~~~~p~~~~~kV~iiEp~~~L-------------d~~a~naLLk~LEep~~~~~~Ilvth~~~-----~ll~ti~S 162 (325)
T PRK08699 101 IIDNVYLTSVRGGLRVILIHPAESM-------------NLQAANSLLKVLEEPPPQVVFLLVSHAAD-----KVLPTIKS 162 (325)
T ss_pred HHHHHhhCcccCCceEEEEechhhC-------------CHHHHHHHHHHHHhCcCCCEEEEEeCChH-----hChHHHHH
Confidence 6666653 44579999999999 567788888888854 466777777665 67889999
Q ss_pred ccccEEecCCCHHHHHHHHH
Q 003088 448 RFQPVLISEPSQEDAVRILL 467 (849)
Q Consensus 448 Rf~~i~~~~ps~~e~~~iL~ 467 (849)
||+.+.|++|+.++..+.|.
T Consensus 163 Rc~~~~~~~~~~~~~~~~L~ 182 (325)
T PRK08699 163 RCRKMVLPAPSHEEALAYLR 182 (325)
T ss_pred HhhhhcCCCCCHHHHHHHHH
Confidence 99999999999999887774
No 405
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.74 E-value=2.4e-08 Score=113.55 Aligned_cols=135 Identities=18% Similarity=0.265 Sum_probs=89.1
Q ss_pred cceeecCCCCchHHHHHHHHHHhcCC--CCceeEeeccccccccccccccCCCCCccccccCcchhHHHHhCCCeEEEEe
Q 003088 661 AMLFCGPTGVGKTELAKSLAACYFGS--ESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRRRPFTLLLLD 738 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~l~~~--~~~~i~i~~~~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~i~~~~~~vl~lD 738 (849)
+++|+||+|+|||++++++++.+... +..++.+++.++...... .+ . ......+.+.++. ..+|+||
T Consensus 138 ~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~-~~-~-------~~~~~~~~~~~~~--~dlLiiD 206 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVN-AL-R-------NNKMEEFKEKYRS--VDLLLID 206 (405)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHH-HH-H-------cCCHHHHHHHHHh--CCEEEEe
Confidence 48999999999999999999987543 456788887765432110 00 0 0011123333433 3599999
Q ss_pred CccccCH--HHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHH
Q 003088 739 EIEKAHP--DIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEE 816 (849)
Q Consensus 739 Eid~l~~--~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~ 816 (849)
|++.+.. ..+..|+..++.-. . .+..+|+|+|..+..+.
T Consensus 207 Di~~l~~~~~~~~~l~~~~n~~~--~--------~~~~iiits~~~p~~l~----------------------------- 247 (405)
T TIGR00362 207 DIQFLAGKERTQEEFFHTFNALH--E--------NGKQIVLTSDRPPKELP----------------------------- 247 (405)
T ss_pred hhhhhcCCHHHHHHHHHHHHHHH--H--------CCCCEEEecCCCHHHHh-----------------------------
Confidence 9998754 46777887776411 0 12347788887654332
Q ss_pred HHhhCChHHhhccc--cEEEcCCCCHHHHccccC
Q 003088 817 LKAYFRPELLNRID--EVVVFRSLEKAQVCQLPL 848 (849)
Q Consensus 817 l~~~~~pell~R~d--~~i~f~pl~~~~~~~I~~ 848 (849)
.+.+.+.+||. ..+.|.|++.+++.+|++
T Consensus 248 ---~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~ 278 (405)
T TIGR00362 248 ---GLEERLRSRFEWGLVVDIEPPDLETRLAILQ 278 (405)
T ss_pred ---hhhhhhhhhccCCeEEEeCCCCHHHHHHHHH
Confidence 15678889995 589999999998888764
No 406
>PRK12377 putative replication protein; Provisional
Probab=98.73 E-value=3.1e-08 Score=103.76 Aligned_cols=106 Identities=22% Similarity=0.365 Sum_probs=71.1
Q ss_pred cceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccccccCCCCCccccccCcchhHHHHhCCCeEEEEeCc
Q 003088 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRRRPFTLLLLDEI 740 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~i~~~~~~vl~lDEi 740 (849)
+++|+||||||||++|.+|++.+...+..++.+..+++....... +.. +.. ...+...+... .+|+|||+
T Consensus 103 ~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~--~~~-----~~~-~~~~l~~l~~~--dLLiIDDl 172 (248)
T PRK12377 103 NFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHES--YDN-----GQS-GEKFLQELCKV--DLLVLDEI 172 (248)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHH--Hhc-----cch-HHHHHHHhcCC--CEEEEcCC
Confidence 499999999999999999999987666677777777665532110 110 000 01122333333 49999999
Q ss_pred --cccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCchhh
Q 003088 741 --EKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTI 786 (849)
Q Consensus 741 --d~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l 786 (849)
+..++..++.|+++++... -...-.|+|||...+.+
T Consensus 173 g~~~~s~~~~~~l~~ii~~R~----------~~~~ptiitSNl~~~~l 210 (248)
T PRK12377 173 GIQRETKNEQVVLNQIIDRRT----------ASMRSVGMLTNLNHEAM 210 (248)
T ss_pred CCCCCCHHHHHHHHHHHHHHH----------hcCCCEEEEcCCCHHHH
Confidence 5667889999999998732 01233688999976554
No 407
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.73 E-value=1.5e-08 Score=116.46 Aligned_cols=150 Identities=17% Similarity=0.191 Sum_probs=93.2
Q ss_pred CCCCccccHHHHHHHHHHHhcCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCC------------------eE
Q 003088 288 LIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSK------------------RI 349 (849)
Q Consensus 288 ~l~~iiG~~~~i~~l~~~l~~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~------------------~~ 349 (849)
.|++++|++..++.+...+ ....|++|+||||+|||++++.++..+........+... ++
T Consensus 190 d~~dv~Gq~~~~~al~~aa--~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g~~~~~~~~~~~Pf 267 (499)
T TIGR00368 190 DLKDIKGQQHAKRALEIAA--AGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVGKLIDRKQIKQRPF 267 (499)
T ss_pred CHHHhcCcHHHHhhhhhhc--cCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchhhhccccccccCCc
Confidence 5678999998877665544 345689999999999999999999765321111111111 11
Q ss_pred EEeeh----hhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCCC--
Q 003088 350 MSLDM----GLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGE-- 423 (849)
Q Consensus 350 ~~l~~----~~~~~~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~~-- 423 (849)
..... ..++.|... .+ -..+....+++|||||++.+ ...+++.|...|+.+.
T Consensus 268 ~~p~~s~s~~~~~ggg~~-----~~----pG~i~lA~~GvLfLDEi~e~-------------~~~~~~~L~~~LE~~~v~ 325 (499)
T TIGR00368 268 RSPHHSASKPALVGGGPI-----PL----PGEISLAHNGVLFLDELPEF-------------KRSVLDALREPIEDGSIS 325 (499)
T ss_pred cccccccchhhhhCCccc-----cc----hhhhhccCCCeEecCChhhC-------------CHHHHHHHHHHHHcCcEE
Confidence 11110 011111100 00 01122344679999999998 5678889988887543
Q ss_pred -------------eEEEEccChHH---H--------------HH-HhhccHHHHhccc-cEEecCCCHHH
Q 003088 424 -------------LQCIASTTQDE---H--------------RT-QFEKDKALARRFQ-PVLISEPSQED 461 (849)
Q Consensus 424 -------------i~vI~at~~~~---~--------------~~-~~~~d~al~~Rf~-~i~~~~ps~~e 461 (849)
+.+|+++|+-+ | .+ ...+...|++||+ .+.+++++.++
T Consensus 326 i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~~ 395 (499)
T TIGR00368 326 ISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPEK 395 (499)
T ss_pred EEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHHH
Confidence 68899998632 1 01 1257889999998 58888877653
No 408
>PRK09183 transposase/IS protein; Provisional
Probab=98.71 E-value=5.5e-08 Score=103.21 Aligned_cols=112 Identities=23% Similarity=0.307 Sum_probs=67.8
Q ss_pred ccCCCCCCcchhHHhhhhhhHHHHhhcCCCCccccHHHHHHHHHHHhcCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCC
Q 003088 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEV 340 (849)
Q Consensus 261 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~l~~iiG~~~~i~~l~~~l~~~~~~niLL~GppGtGKT~la~~la~~l~~~~~ 340 (849)
+++.+++|...+++.|..+..... ....+..+..+-+.....|++|+||||||||+++.+|+..+...
T Consensus 62 ~~k~a~~p~~~~l~~fd~~~~~~~----------~~~~i~~L~~~~~i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~-- 129 (259)
T PRK09183 62 YTRMAAFPAVKTFEEYDFTFATGA----------PQKQLQSLRSLSFIERNENIVLLGPSGVGKTHLAIALGYEAVRA-- 129 (259)
T ss_pred HHHhCCCCCCCcHhhcccccCCCC----------CHHHHHHHhcCCchhcCCeEEEEeCCCCCHHHHHHHHHHHHHHc--
Confidence 345566777788888876543221 11244445443344567799999999999999999999886543
Q ss_pred CccccCCeEEEeehhhhhcc---ccccchHHHHHHHHHHHHHhcCCeEEEEcCcchh
Q 003088 341 PVFLLSKRIMSLDMGLLMAG---AKERGELEARVTTLISEIQKSGDVILFIDEVHTL 394 (849)
Q Consensus 341 p~~~~~~~~~~l~~~~~~~~---~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l 394 (849)
+..+..++...+... ....+. +..++.... ..+.+|+|||++.+
T Consensus 130 -----G~~v~~~~~~~l~~~l~~a~~~~~----~~~~~~~~~-~~~dlLiiDdlg~~ 176 (259)
T PRK09183 130 -----GIKVRFTTAADLLLQLSTAQRQGR----YKTTLQRGV-MAPRLLIIDEIGYL 176 (259)
T ss_pred -----CCeEEEEeHHHHHHHHHHHHHCCc----HHHHHHHHh-cCCCEEEEcccccC
Confidence 455555554443311 111122 223333321 23469999999876
No 409
>PRK08116 hypothetical protein; Validated
Probab=98.70 E-value=2.2e-07 Score=99.03 Aligned_cols=136 Identities=18% Similarity=0.245 Sum_probs=75.2
Q ss_pred CCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhcccc--ccchHHHHHHHHHHHHHhcCCeEEEEc
Q 003088 312 NNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAK--ERGELEARVTTLISEIQKSGDVILFID 389 (849)
Q Consensus 312 ~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~~~~--~~g~~e~~l~~l~~~~~~~~~~ILfID 389 (849)
.+++|+|++|||||+||.++++.+... +..++.++...++..-+ +.+........+++.+.+. .+|+||
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~-------~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~~~--dlLviD 185 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEK-------GVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLVNA--DLLILD 185 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc-------CCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhcCC--CEEEEe
Confidence 359999999999999999999999654 45566666655442110 0000111122344444433 499999
Q ss_pred CcchhhhCCCCCCCCCCccHHHHHHHhhhhcCCCeEEEEccChHH--HHHHhhccHHHHhcc----ccEEecCCCHHHHH
Q 003088 390 EVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDE--HRTQFEKDKALARRF----QPVLISEPSQEDAV 463 (849)
Q Consensus 390 Ei~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~~i~vI~at~~~~--~~~~~~~d~al~~Rf----~~i~~~~ps~~e~~ 463 (849)
|++...... .....+.+++.....++ ..+|.|||... +.. ..+..+.+|+ ..|.+..++. |.
T Consensus 186 Dlg~e~~t~-------~~~~~l~~iin~r~~~~-~~~IiTsN~~~~eL~~--~~~~ri~sRl~e~~~~v~~~g~d~--R~ 253 (268)
T PRK08116 186 DLGAERDTE-------WAREKVYNIIDSRYRKG-LPTIVTTNLSLEELKN--QYGKRIYDRILEMCTPVENEGKSY--RK 253 (268)
T ss_pred cccCCCCCH-------HHHHHHHHHHHHHHHCC-CCEEEECCCCHHHHHH--HHhHHHHHHHHHcCEEEEeeCcCh--hH
Confidence 997541110 01222334444333333 45666666543 222 2467888885 3467766654 44
Q ss_pred HHHHH
Q 003088 464 RILLG 468 (849)
Q Consensus 464 ~iL~~ 468 (849)
.+.+.
T Consensus 254 ~~~~e 258 (268)
T PRK08116 254 EIAKE 258 (268)
T ss_pred HHHHH
Confidence 44444
No 410
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.70 E-value=2e-08 Score=96.20 Aligned_cols=129 Identities=22% Similarity=0.336 Sum_probs=80.3
Q ss_pred cccHHHHHHHHHHHhc--CCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhccccccchHHHH
Q 003088 293 IGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEAR 370 (849)
Q Consensus 293 iG~~~~i~~l~~~l~~--~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~~~~~~g~~e~~ 370 (849)
||....++++.+.+.. ....+++|+|++||||+++|++|...-..... .++.+++....
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~-------~~~~~~~~~~~------------ 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGRANG-------PFIVIDCASLP------------ 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS--------CCCCCHHCTC------------
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCccCC-------CeEEechhhCc------------
Confidence 5667777777776643 56678999999999999999999886543222 22333333211
Q ss_pred HHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhc---CCCeEEEEccChHHHH--HHhhccHHH
Q 003088 371 VTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG---RGELQCIASTTQDEHR--TQFEKDKAL 445 (849)
Q Consensus 371 l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le---~~~i~vI~at~~~~~~--~~~~~d~al 445 (849)
.++++. ..+++|||+|++.| ..+.+..|..+++ +.++++|++++.+-.. .--.+++.|
T Consensus 62 -~~~l~~---a~~gtL~l~~i~~L-------------~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~l~~l~~~~~~~~~L 124 (138)
T PF14532_consen 62 -AELLEQ---AKGGTLYLKNIDRL-------------SPEAQRRLLDLLKRQERSNVRLIASSSQDLEELVEEGRFSPDL 124 (138)
T ss_dssp -HHHHHH---CTTSEEEEECGCCS--------------HHHHHHHHHHHHHCTTTTSEEEEEECC-CCCHHHHSTHHHHH
T ss_pred -HHHHHH---cCCCEEEECChHHC-------------CHHHHHHHHHHHHhcCCCCeEEEEEeCCCHHHHhhccchhHHH
Confidence 233333 35679999999999 4566666666665 3578888887754311 223456788
Q ss_pred HhccccEEecCC
Q 003088 446 ARRFQPVLISEP 457 (849)
Q Consensus 446 ~~Rf~~i~~~~p 457 (849)
..||..+.+..|
T Consensus 125 ~~~l~~~~i~lP 136 (138)
T PF14532_consen 125 YYRLSQLEIHLP 136 (138)
T ss_dssp HHHCSTCEEEE-
T ss_pred HHHhCCCEEeCC
Confidence 888875444433
No 411
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.70 E-value=5.5e-08 Score=101.08 Aligned_cols=131 Identities=15% Similarity=0.120 Sum_probs=83.8
Q ss_pred ccceeecCCCCchHHHHHHHHHHhcCCCCc--eeEe-eccccccccccc-cccCCCCCccccccCcchhHHHHh-----C
Q 003088 660 AAMLFCGPTGVGKTELAKSLAACYFGSESS--MLRL-DMSEYMERHTVS-KLIGSPPGYVGYEEGGLLTEAIRR-----R 730 (849)
Q Consensus 660 ~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~--~i~i-~~~~~~~~~~~~-~l~g~~~g~vg~~~~~~l~~~i~~-----~ 730 (849)
..+||+||.|+||..+|.++|+.+...+.. +-.. .|..+.....++ .++......++.++...+.+.+.. .
T Consensus 8 HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~e~~ 87 (261)
T PRK05818 8 HPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSVESN 87 (261)
T ss_pred cceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCchhcC
Confidence 359999999999999999999998654321 1000 111111111111 111111112333333333333322 2
Q ss_pred CCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHH
Q 003088 731 PFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMK 810 (849)
Q Consensus 731 ~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~ 810 (849)
++.|++|+++|+|+..+.|.||+.||+ +..+++||++|+....
T Consensus 88 ~~KV~II~~ae~m~~~AaNaLLK~LEE-----------Pp~~t~fiLit~~~~~-------------------------- 130 (261)
T PRK05818 88 GKKIYIIYGIEKLNKQSANSLLKLIEE-----------PPKNTYGIFTTRNENN-------------------------- 130 (261)
T ss_pred CCEEEEeccHhhhCHHHHHHHHHhhcC-----------CCCCeEEEEEECChHh--------------------------
Confidence 467999999999999999999999999 5678999998875322
Q ss_pred HHHHHHHHhhCChHHhhccccEEEcCCC
Q 003088 811 TLVVEELKAYFRPELLNRIDEVVVFRSL 838 (849)
Q Consensus 811 ~~~~~~l~~~~~pell~R~d~~i~f~pl 838 (849)
+.|.+++|+ ..+.|+++
T Consensus 131 ----------lLpTI~SRC-q~~~~~~~ 147 (261)
T PRK05818 131 ----------ILNTILSRC-VQYVVLSK 147 (261)
T ss_pred ----------CchHhhhhe-eeeecCCh
Confidence 678888998 56777776
No 412
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.68 E-value=1.2e-07 Score=89.79 Aligned_cols=126 Identities=22% Similarity=0.297 Sum_probs=74.4
Q ss_pred CCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhc------------cccccchHHHHHHHHHHHH
Q 003088 311 KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA------------GAKERGELEARVTTLISEI 378 (849)
Q Consensus 311 ~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~------------~~~~~g~~e~~l~~l~~~~ 378 (849)
..+++|+||||||||++++.++..+.... ..++.++...... ..............++..+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG-------GGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALA 74 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCC-------CCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999999885432 1344444332211 1111233444556677777
Q ss_pred HhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHH------HHhhhhcCCCeEEEEccChHHHHHHhhccHHHHhccc-c
Q 003088 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISN------LLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQ-P 451 (849)
Q Consensus 379 ~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~------~L~~~le~~~i~vI~at~~~~~~~~~~~d~al~~Rf~-~ 451 (849)
+...+.|+||||++.+.... ...... ............+|+++|.. ....+..+..|+. .
T Consensus 75 ~~~~~~viiiDei~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~~~~~ 141 (148)
T smart00382 75 RKLKPDVLILDEITSLLDAE---------QEALLLLLEELRLLLLLKSEKNLTVILTTNDE----KDLGPALLRRRFDRR 141 (148)
T ss_pred HhcCCCEEEEECCcccCCHH---------HHHHHHhhhhhHHHHHHHhcCCCEEEEEeCCC----ccCchhhhhhccceE
Confidence 76666899999999995321 111000 11233345668888888851 1134455555765 3
Q ss_pred EEecC
Q 003088 452 VLISE 456 (849)
Q Consensus 452 i~~~~ 456 (849)
+.+..
T Consensus 142 ~~~~~ 146 (148)
T smart00382 142 IVLLL 146 (148)
T ss_pred EEecC
Confidence 54443
No 413
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.68 E-value=5.9e-08 Score=110.53 Aligned_cols=135 Identities=20% Similarity=0.300 Sum_probs=89.1
Q ss_pred cceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccccccCCCCCccccccCcchhHHHHhCCCeEEEEeCc
Q 003088 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRRRPFTLLLLDEI 740 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~i~~~~~~vl~lDEi 740 (849)
+++|+||+|+|||++++++++.+...+..++.+++..+.... ...+ . ......+....+ ...+|+|||+
T Consensus 143 pl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~-~~~l-~-------~~~~~~f~~~~~--~~dvLiIDDi 211 (445)
T PRK12422 143 PIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHL-VSAI-R-------SGEMQRFRQFYR--NVDALFIEDI 211 (445)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHH-HHHH-h-------cchHHHHHHHcc--cCCEEEEcch
Confidence 499999999999999999999875555677777776554321 1101 0 000111222222 2359999999
Q ss_pred cccCH--HHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHH
Q 003088 741 EKAHP--DIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELK 818 (849)
Q Consensus 741 d~l~~--~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~ 818 (849)
+.+.. ..|..|+..+..-. + ....+|+|+|..+..+.
T Consensus 212 q~l~~k~~~qeelf~l~N~l~--~--------~~k~IIlts~~~p~~l~------------------------------- 250 (445)
T PRK12422 212 EVFSGKGATQEEFFHTFNSLH--T--------EGKLIVISSTCAPQDLK------------------------------- 250 (445)
T ss_pred hhhcCChhhHHHHHHHHHHHH--H--------CCCcEEEecCCCHHHHh-------------------------------
Confidence 99854 46777777765311 0 12357888887654432
Q ss_pred hhCChHHhhccc--cEEEcCCCCHHHHccccC
Q 003088 819 AYFRPELLNRID--EVVVFRSLEKAQVCQLPL 848 (849)
Q Consensus 819 ~~~~pell~R~d--~~i~f~pl~~~~~~~I~~ 848 (849)
.+.+.|.+||. .++.+.|++.+++..|++
T Consensus 251 -~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~ 281 (445)
T PRK12422 251 -AMEERLISRFEWGIAIPLHPLTKEGLRSFLE 281 (445)
T ss_pred -hhHHHHHhhhcCCeEEecCCCCHHHHHHHHH
Confidence 15688999994 799999999998887764
No 414
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.67 E-value=5.2e-08 Score=102.87 Aligned_cols=110 Identities=24% Similarity=0.304 Sum_probs=69.4
Q ss_pred CCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhcc---ccccchHHHHHHHHHHHHHhcCCeEE
Q 003088 310 TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAG---AKERGELEARVTTLISEIQKSGDVIL 386 (849)
Q Consensus 310 ~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~~---~~~~g~~e~~l~~l~~~~~~~~~~IL 386 (849)
...|++|+||||||||+||-+|++++... +.+++.+....++.. ....|..+.++... +++. -+|
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~-------g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~---l~~~--dlL 171 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKA-------GISVLFITAPDLLSKLKAAFDEGRLEEKLLRE---LKKV--DLL 171 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHc-------CCeEEEEEHHHHHHHHHHHHhcCchHHHHHHH---hhcC--CEE
Confidence 77899999999999999999999999743 666777776665422 11123444444433 3333 399
Q ss_pred EEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCCCeEEEEccCh--HHHHHHhh
Q 003088 387 FIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQ--DEHRTQFE 440 (849)
Q Consensus 387 fIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~~i~vI~at~~--~~~~~~~~ 440 (849)
||||+....... .....+.+++....++... |.++|. .++...+.
T Consensus 172 IiDDlG~~~~~~-------~~~~~~~q~I~~r~~~~~~--~~tsN~~~~~~~~~~~ 218 (254)
T COG1484 172 IIDDIGYEPFSQ-------EEADLLFQLISRRYESRSL--IITSNLSFGEWDELFG 218 (254)
T ss_pred EEecccCccCCH-------HHHHHHHHHHHHHHhhccc--eeecCCChHHHHhhcc
Confidence 999999873211 1133445556666666666 555554 34444443
No 415
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.67 E-value=2.8e-07 Score=97.98 Aligned_cols=136 Identities=18% Similarity=0.131 Sum_probs=92.4
Q ss_pred HHHHHHHHhcCCCCCC-eEeCCCCChHHHHHHHHHHHhhhCCCCccc------cCCeEEEeehhhhhccccccchHHHHH
Q 003088 299 IQRIIQILCRRTKNNP-ILLGESGVGKTAIAEGLAIRIVQAEVPVFL------LSKRIMSLDMGLLMAGAKERGELEARV 371 (849)
Q Consensus 299 i~~l~~~l~~~~~~ni-LL~GppGtGKT~la~~la~~l~~~~~p~~~------~~~~~~~l~~~~~~~~~~~~g~~e~~l 371 (849)
-+.+...+...+..|. ||+||.|+||+++|..+|+.+.+...+... .+-.++.+.. .+.. ..-..+.+
T Consensus 6 ~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p----~~~~-~~I~idqi 80 (290)
T PRK05917 6 WEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSP----QGKG-RLHSIETP 80 (290)
T ss_pred HHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEec----CCCC-CcCcHHHH
Confidence 4556667777666665 699999999999999999999875433111 1112222211 0000 00113345
Q ss_pred HHHHHHHHh----cCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCC--CeEEEEccChHHHHHHhhccHHH
Q 003088 372 TTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG--ELQCIASTTQDEHRTQFEKDKAL 445 (849)
Q Consensus 372 ~~l~~~~~~----~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~--~i~vI~at~~~~~~~~~~~d~al 445 (849)
+.+.+.+.. ++..|++||++|.| +.+++|.|++.||++ ..++|..|+..+ .+.|.+
T Consensus 81 R~l~~~~~~~p~e~~~kv~ii~~ad~m-------------t~~AaNaLLK~LEEPp~~~~fiL~~~~~~-----~ll~TI 142 (290)
T PRK05917 81 RAIKKQIWIHPYESPYKIYIIHEADRM-------------TLDAISAFLKVLEDPPQHGVIILTSAKPQ-----RLPPTI 142 (290)
T ss_pred HHHHHHHhhCccCCCceEEEEechhhc-------------CHHHHHHHHHHhhcCCCCeEEEEEeCChh-----hCcHHH
Confidence 566555543 44579999999999 678899999999963 567777777666 788999
Q ss_pred HhccccEEecCC
Q 003088 446 ARRFQPVLISEP 457 (849)
Q Consensus 446 ~~Rf~~i~~~~p 457 (849)
+|||+.+.|+++
T Consensus 143 ~SRcq~~~~~~~ 154 (290)
T PRK05917 143 RSRSLSIHIPME 154 (290)
T ss_pred HhcceEEEccch
Confidence 999999999875
No 416
>PF13173 AAA_14: AAA domain
Probab=98.67 E-value=6.1e-08 Score=91.60 Aligned_cols=123 Identities=23% Similarity=0.303 Sum_probs=77.6
Q ss_pred CCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCc
Q 003088 312 NNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEV 391 (849)
Q Consensus 312 ~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi 391 (849)
..++|+||.||||||+++.+++.+. ...+++.+++......... ..+ +.+.+.+....++.++||||+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~--------~~~~~~yi~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~i~iDEi 70 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL--------PPENILYINFDDPRDRRLA--DPD--LLEYFLELIKPGKKYIFIDEI 70 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc--------ccccceeeccCCHHHHHHh--hhh--hHHHHHHhhccCCcEEEEehh
Confidence 4579999999999999999998874 1244555555443321100 000 222222222235689999999
Q ss_pred chhhhCCCCCCCCCCccHHHHHHHhhhhcCC-CeEEEEccChHHHHHHhhccHHHHhccccEEecCCCHHH
Q 003088 392 HTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-ELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQED 461 (849)
Q Consensus 392 ~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~-~i~vI~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~~e 461 (849)
+.+ .+....++.+.+++ ++.+|.|++...... ......+..|...+++.+++..|
T Consensus 71 q~~--------------~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~-~~~~~~l~gr~~~~~l~Plsf~E 126 (128)
T PF13173_consen 71 QYL--------------PDWEDALKFLVDNGPNIKIILTGSSSSLLS-KDIAESLAGRVIEIELYPLSFRE 126 (128)
T ss_pred hhh--------------ccHHHHHHHHHHhccCceEEEEccchHHHh-hcccccCCCeEEEEEECCCCHHH
Confidence 999 13455666666665 677777776654221 13345666688889999998876
No 417
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.66 E-value=2.1e-07 Score=107.33 Aligned_cols=223 Identities=14% Similarity=0.124 Sum_probs=129.8
Q ss_pred hhhhHHHHhhcCCCCccccHHHHHHHHHHHhcCC-----CCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEE
Q 003088 277 CVDLTARASEELIDPVIGRETEIQRIIQILCRRT-----KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMS 351 (849)
Q Consensus 277 ~~~l~~~~~~~~l~~iiG~~~~i~~l~~~l~~~~-----~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~ 351 (849)
...|+++|+|..++++....+.++.+..++...- ..-+||+|||||||||.++.||+++.-. +........+..
T Consensus 6 ~~~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~-v~Ew~np~~~~~ 84 (519)
T PF03215_consen 6 SEPWVEKYAPKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELGFE-VQEWINPVSFRE 84 (519)
T ss_pred cCccchhcCCCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhCCe-eEEecCCCCccc
Confidence 4579999999999999999999999888885532 2235889999999999999999998321 111000000000
Q ss_pred ee--hhhhhccccccchHHHHHH---HH-HHHHH-----------hcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHH
Q 003088 352 LD--MGLLMAGAKERGELEARVT---TL-ISEIQ-----------KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNL 414 (849)
Q Consensus 352 l~--~~~~~~~~~~~g~~e~~l~---~l-~~~~~-----------~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~ 414 (849)
.+ ...........+++..+.. .+ +...+ ...+.||+|||+-.++.. ....+.+.
T Consensus 85 ~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~---------~~~~f~~~ 155 (519)
T PF03215_consen 85 SDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHR---------DTSRFREA 155 (519)
T ss_pred cccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccch---------hHHHHHHH
Confidence 00 0000000000001111111 11 11111 124679999999987532 23567788
Q ss_pred HhhhhcCC---CeEEEEccC-----hHHHH-----HHhhccHHHHh--ccccEEecCCCHHHHHHHHHHHHHHHHh-hcC
Q 003088 415 LKPSLGRG---ELQCIASTT-----QDEHR-----TQFEKDKALAR--RFQPVLISEPSQEDAVRILLGLREKYEA-HHN 478 (849)
Q Consensus 415 L~~~le~~---~i~vI~at~-----~~~~~-----~~~~~d~al~~--Rf~~i~~~~ps~~e~~~iL~~~~~~~~~-~~~ 478 (849)
|..++..+ .+++|.+-+ ...++ ...-+.+.+.. ++..|.|.+-...-..+.|..++..-.. ..+
T Consensus 156 L~~~l~~~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~FNpIa~T~mkKaL~rI~~~E~~~~~~ 235 (519)
T PF03215_consen 156 LRQYLRSSRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKFNPIAPTFMKKALKRILKKEARSSSG 235 (519)
T ss_pred HHHHHHcCCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHHhhhhcC
Confidence 88888744 345555511 11111 01123456665 4457999999999999999888763211 111
Q ss_pred -CccC--HHHHHHHHHhhhcccccCcchhhHHHHHHHHhh
Q 003088 479 -CKFT--LEAINAAVHLSARYISDRYLPDKAIDLVDEAGS 515 (849)
Q Consensus 479 -~~i~--~~~l~~~a~ls~~~~~~r~~p~~ai~ll~~a~~ 515 (849)
.... .+.++.++..+.+.+. .||..|.-+|.
T Consensus 236 ~~~~p~~~~~l~~I~~~s~GDIR------sAIn~LQf~~~ 269 (519)
T PF03215_consen 236 KNKVPDKQSVLDSIAESSNGDIR------SAINNLQFWCL 269 (519)
T ss_pred CccCCChHHHHHHHHHhcCchHH------HHHHHHHHHhc
Confidence 2222 3458888888888774 67777776665
No 418
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.66 E-value=1.8e-08 Score=100.66 Aligned_cols=111 Identities=21% Similarity=0.348 Sum_probs=52.5
Q ss_pred ccCCCCCCcchhHHhhhhhhHHHHhhcCCCCccccHHHHHHHHHHHhcCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCC
Q 003088 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEV 340 (849)
Q Consensus 261 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~l~~iiG~~~~i~~l~~~l~~~~~~niLL~GppGtGKT~la~~la~~l~~~~~ 340 (849)
+++.+++|....++.|.......... ..+..+...-+.....|++|+||+|||||++|.++++++...
T Consensus 7 ~l~~a~lp~~~~~~~~d~~~~~~~~~----------~~~~~l~~~~~~~~~~~l~l~G~~G~GKThLa~ai~~~~~~~-- 74 (178)
T PF01695_consen 7 RLKQAGLPPDATLENFDFSNERGIDK----------AQIAQLAALEFIENGENLILYGPPGTGKTHLAVAIANEAIRK-- 74 (178)
T ss_dssp -------------------------------------HHHHHHHH-S-SC--EEEEEESTTSSHHHHHHHHHHHHHHT--
T ss_pred cccccccccccccccccccchhhHHH----------HHHHHHhcCCCcccCeEEEEEhhHhHHHHHHHHHHHHHhccC--
Confidence 45566677666677666544332222 245555444455677899999999999999999999998764
Q ss_pred CccccCCeEEEeehhhhhcc---ccccchHHHHHHHHHHHHHhcCCeEEEEcCcchh
Q 003088 341 PVFLLSKRIMSLDMGLLMAG---AKERGELEARVTTLISEIQKSGDVILFIDEVHTL 394 (849)
Q Consensus 341 p~~~~~~~~~~l~~~~~~~~---~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l 394 (849)
+..+..++...++.. ....+..+ .+++.+.+. .+|+|||+...
T Consensus 75 -----g~~v~f~~~~~L~~~l~~~~~~~~~~----~~~~~l~~~--dlLilDDlG~~ 120 (178)
T PF01695_consen 75 -----GYSVLFITASDLLDELKQSRSDGSYE----ELLKRLKRV--DLLILDDLGYE 120 (178)
T ss_dssp -----T--EEEEEHHHHHHHHHCCHCCTTHC----HHHHHHHTS--SCEEEETCTSS
T ss_pred -----CcceeEeecCceeccccccccccchh----hhcCccccc--cEeccccccee
Confidence 555666666655422 22223333 334444433 49999999765
No 419
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.66 E-value=3.5e-08 Score=113.64 Aligned_cols=135 Identities=16% Similarity=0.266 Sum_probs=88.0
Q ss_pred cceeecCCCCchHHHHHHHHHHhcCC--CCceeEeeccccccccccccccCCCCCccccccCcchhHHHHhCCCeEEEEe
Q 003088 661 AMLFCGPTGVGKTELAKSLAACYFGS--ESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRRRPFTLLLLD 738 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~l~~~--~~~~i~i~~~~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~i~~~~~~vl~lD 738 (849)
+++|+||+|||||++++++++.+... +..++.+++.++..... ..+ . ......+.+.++. ..+|+||
T Consensus 150 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~-~~~-~-------~~~~~~~~~~~~~--~dlLiiD 218 (450)
T PRK00149 150 PLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFV-NAL-R-------NNTMEEFKEKYRS--VDVLLID 218 (450)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHH-HHH-H-------cCcHHHHHHHHhc--CCEEEEe
Confidence 49999999999999999999987543 45577888776643211 000 0 0001123333332 4599999
Q ss_pred CccccCH--HHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHH
Q 003088 739 EIEKAHP--DIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEE 816 (849)
Q Consensus 739 Eid~l~~--~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~ 816 (849)
|++.+.. ..+..|+..++.-. . ....+|+|+|..+..+.
T Consensus 219 Di~~l~~~~~~~~~l~~~~n~l~--~--------~~~~iiits~~~p~~l~----------------------------- 259 (450)
T PRK00149 219 DIQFLAGKERTQEEFFHTFNALH--E--------AGKQIVLTSDRPPKELP----------------------------- 259 (450)
T ss_pred hhhhhcCCHHHHHHHHHHHHHHH--H--------CCCcEEEECCCCHHHHH-----------------------------
Confidence 9998743 46777777765411 0 11236778877554332
Q ss_pred HHhhCChHHhhccc--cEEEcCCCCHHHHccccC
Q 003088 817 LKAYFRPELLNRID--EVVVFRSLEKAQVCQLPL 848 (849)
Q Consensus 817 l~~~~~pell~R~d--~~i~f~pl~~~~~~~I~~ 848 (849)
. +.+.|.+||. .++.|.|++.+++.+|++
T Consensus 260 --~-l~~~l~SRl~~gl~v~i~~pd~~~r~~il~ 290 (450)
T PRK00149 260 --G-LEERLRSRFEWGLTVDIEPPDLETRIAILK 290 (450)
T ss_pred --H-HHHHHHhHhcCCeeEEecCCCHHHHHHHHH
Confidence 1 5678889995 589999999999888764
No 420
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.65 E-value=8.2e-08 Score=112.20 Aligned_cols=144 Identities=13% Similarity=0.105 Sum_probs=101.7
Q ss_pred CccceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccccccCCCCCccc----cccCcchhHHHHhCCCeE
Q 003088 659 TAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVG----YEEGGLLTEAIRRRPFTL 734 (849)
Q Consensus 659 ~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~vg----~~~~~~l~~~i~~~~~~v 734 (849)
++.|++.|+.||||+++++.++..+-. ..||+.+-.+ .+...|+|.- .+. ......-.+.+..+.+||
T Consensus 25 ~gGv~i~g~~G~~ks~~~r~l~~llp~-~~p~r~~p~~-----~t~~~L~Gg~--Dl~~~l~~g~~~~~pGlla~Ah~Gv 96 (584)
T PRK13406 25 LGGVVLRARAGPVRDRWLAALRALLPA-GTPLRRLPPG-----IADDRLLGGL--DLAATLRAGRPVAQRGLLAEADGGV 96 (584)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhcCC-CCCcccCCCC-----CcHHHccCCc--hHHhHhhcCCcCCCCCceeeccCCE
Confidence 345999999999999999999998732 3455544333 2234566631 000 000001234566778899
Q ss_pred EEEeCccccCHHHHHHHHHHhhcCeeecC-CCceeecC-CeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHH
Q 003088 735 LLLDEIEKAHPDIFNILLQVFEDGHLTDS-HGRRVSFK-NALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTL 812 (849)
Q Consensus 735 l~lDEid~l~~~~~~~Ll~~le~g~~~~~-~g~~~~~~-~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~ 812 (849)
|||||+..+++.+++.|++.|++|.++.. .|.++.++ ++.+|+|-|.. +.
T Consensus 97 L~lDe~n~~~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~-~~--------------------------- 148 (584)
T PRK13406 97 LVLAMAERLEPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGA-EE--------------------------- 148 (584)
T ss_pred EEecCcccCCHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCCh-hc---------------------------
Confidence 99999999999999999999999998875 46666665 78888874431 00
Q ss_pred HHHHHHhhCChHHhhccccEEEcCCCCHHHH
Q 003088 813 VVEELKAYFRPELLNRIDEVVVFRSLEKAQV 843 (849)
Q Consensus 813 ~~~~l~~~~~pell~R~d~~i~f~pl~~~~~ 843 (849)
...+++.|++||+..|...+++..+.
T Consensus 149 -----~~~L~~~lLDRf~l~v~v~~~~~~~~ 174 (584)
T PRK13406 149 -----DERAPAALADRLAFHLDLDGLALRDA 174 (584)
T ss_pred -----ccCCCHHhHhheEEEEEcCCCChHHh
Confidence 01178999999999999998887654
No 421
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.64 E-value=5e-08 Score=100.94 Aligned_cols=135 Identities=19% Similarity=0.290 Sum_probs=86.5
Q ss_pred cceeecCCCCchHHHHHHHHHHhcC--CCCceeEeeccccccccccccccCCCCCccccccCcchhHHHHhCCCeEEEEe
Q 003088 661 AMLFCGPTGVGKTELAKSLAACYFG--SESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRRRPFTLLLLD 738 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~l~~--~~~~~i~i~~~~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~i~~~~~~vl~lD 738 (849)
.++++||+|+|||++.+++++.+.. .+..++.+++.++........ -......+.+.++. ..+|+||
T Consensus 36 ~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~---------~~~~~~~~~~~~~~--~DlL~iD 104 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADAL---------RDGEIEEFKDRLRS--ADLLIID 104 (219)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHH---------HTTSHHHHHHHHCT--SSEEEEE
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHH---------Hcccchhhhhhhhc--CCEEEEe
Confidence 3899999999999999999987642 356688888877654321110 00111123333333 3499999
Q ss_pred CccccCHH--HHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHH
Q 003088 739 EIEKAHPD--IFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEE 816 (849)
Q Consensus 739 Eid~l~~~--~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~ 816 (849)
+++.+... .|..|+.+++.-. -.+..+|+|++..+..+.
T Consensus 105 Di~~l~~~~~~q~~lf~l~n~~~----------~~~k~li~ts~~~P~~l~----------------------------- 145 (219)
T PF00308_consen 105 DIQFLAGKQRTQEELFHLFNRLI----------ESGKQLILTSDRPPSELS----------------------------- 145 (219)
T ss_dssp TGGGGTTHHHHHHHHHHHHHHHH----------HTTSEEEEEESS-TTTTT-----------------------------
T ss_pred cchhhcCchHHHHHHHHHHHHHH----------hhCCeEEEEeCCCCcccc-----------------------------
Confidence 99999654 5888888887621 113367888887665432
Q ss_pred HHhhCChHHhhccc--cEEEcCCCCHHHHccccC
Q 003088 817 LKAYFRPELLNRID--EVVVFRSLEKAQVCQLPL 848 (849)
Q Consensus 817 l~~~~~pell~R~d--~~i~f~pl~~~~~~~I~~ 848 (849)
.+.|+|.+||. .++.+.|++.++..+|++
T Consensus 146 ---~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~ 176 (219)
T PF00308_consen 146 ---GLLPDLRSRLSWGLVVELQPPDDEDRRRILQ 176 (219)
T ss_dssp ---TS-HHHHHHHHCSEEEEE----HHHHHHHHH
T ss_pred ---ccChhhhhhHhhcchhhcCCCCHHHHHHHHH
Confidence 16789999994 588999999998887763
No 422
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.61 E-value=1.1e-07 Score=110.61 Aligned_cols=182 Identities=23% Similarity=0.339 Sum_probs=110.4
Q ss_pred CCCccccHHHHHHHHHHHhc--CCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhc-------
Q 003088 289 IDPVIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA------- 359 (849)
Q Consensus 289 l~~iiG~~~~i~~l~~~l~~--~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~------- 359 (849)
+.+++|....++.+.+.+.+ ....+++++|++|||||++|+++....... +.+++.++|..+..
T Consensus 137 ~~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~-------~~~~i~i~c~~~~~~~~~~~l 209 (469)
T PRK10923 137 TTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPRA-------KAPFIALNMAAIPKDLIESEL 209 (469)
T ss_pred cccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhcCCCC-------CCCeEeeeCCCCCHHHHHHHh
Confidence 45688988888777665532 456679999999999999999998865433 45566666654311
Q ss_pred -cccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCCC-------------eE
Q 003088 360 -GAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGE-------------LQ 425 (849)
Q Consensus 360 -~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~~-------------i~ 425 (849)
|. ..|.+..........+....++.|||||++.| ..+.+..|..+++.+. ++
T Consensus 210 fg~-~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l-------------~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~r 275 (469)
T PRK10923 210 FGH-EKGAFTGANTIRQGRFEQADGGTLFLDEIGDM-------------PLDVQTRLLRVLADGQFYRVGGYAPVKVDVR 275 (469)
T ss_pred cCC-CCCCCCCCCcCCCCCeeECCCCEEEEeccccC-------------CHHHHHHHHHHHhcCcEEeCCCCCeEEeeEE
Confidence 00 00000000000000012234568999999999 5667778888887543 48
Q ss_pred EEEccChHHHH--HHhhccHHHHhccccEEecCCC----HHHHHHHHHHHHHHHHhhcC---CccCHHHHHHHHH
Q 003088 426 CIASTTQDEHR--TQFEKDKALARRFQPVLISEPS----QEDAVRILLGLREKYEAHHN---CKFTLEAINAAVH 491 (849)
Q Consensus 426 vI~at~~~~~~--~~~~~d~al~~Rf~~i~~~~ps----~~e~~~iL~~~~~~~~~~~~---~~i~~~~l~~~a~ 491 (849)
+|++|+.+--. .--...+.|..||..+.+..|. .+|...++..+.+++....+ ..++++++..+..
T Consensus 276 ii~~~~~~l~~~~~~~~~~~~L~~~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~ 350 (469)
T PRK10923 276 IIAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTR 350 (469)
T ss_pred EEEeCCCCHHHHHHcCCchHHHHHHhcceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHh
Confidence 88888765311 1112446788888755555553 34555566666665544433 2578888776544
No 423
>PF02861 Clp_N: Clp amino terminal domain; InterPro: IPR004176 This short domain is found in one or two copies at the amino terminus of ClpA and ClpB proteins from bacteria and eukaryotes. The function of these domains is uncertain but they may form a protein binding site []. The proteins are thought to be subunits of ATP-dependent proteases which act as chaperones to target the proteases to substrates.; GO: 0019538 protein metabolic process; PDB: 3FH2_A 3ZRJ_A 3ZRI_A 1QVR_C 3FES_C 2Y1R_F 3PXG_D 2Y1Q_A 3PXI_C 2K77_A ....
Probab=98.61 E-value=5.7e-08 Score=76.41 Aligned_cols=51 Identities=22% Similarity=0.330 Sum_probs=46.0
Q ss_pred HHHHHHHcCCCCcCHHHHHHHHhcCCC--hHHHHHHCCCCHHHHHHHHHHHhh
Q 003088 96 SQREAKSLGKDMVFTQHLLLGLIAEDR--HPNGFLESGITIDKAREAVVSIWH 146 (849)
Q Consensus 96 A~~~A~~~~~~~v~~eHLLlaLl~~~~--~~~~l~~~gi~~~~~~~~~~~~~~ 146 (849)
|+++|+++||.+|++||||+||+.+++ ..++|..+|++++.+++++.+.++
T Consensus 1 A~~~A~~~~~~~i~~eHlL~all~~~~~~~~~il~~~~id~~~l~~~i~~~lg 53 (53)
T PF02861_consen 1 AQELARERGHQYISPEHLLLALLEDPDSIAARILKKLGIDPEQLKAAIEKALG 53 (53)
T ss_dssp HHHHHHHTTBSSE-HHHHHHHHHHHTTSHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred CHHHHHHcCCCcccHHHHHHHHHhhhhHHHHHHHHHcCCCHHHHHHHHHHHhC
Confidence 789999999999999999999999875 689999999999999999987654
No 424
>PRK08116 hypothetical protein; Validated
Probab=98.61 E-value=2.1e-07 Score=99.24 Aligned_cols=109 Identities=17% Similarity=0.265 Sum_probs=72.7
Q ss_pred cceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccccccCCCCCccccccCcchhHHHHhCCCeEEEEeCc
Q 003088 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRRRPFTLLLLDEI 740 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~i~~~~~~vl~lDEi 740 (849)
+++|+|++|||||++|.++++.+...+.+++.++.+++...... -+... .... ...+.+.+... .+|+|||+
T Consensus 116 gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~--~~~~~---~~~~-~~~~~~~l~~~--dlLviDDl 187 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKS--TYKSS---GKED-ENEIIRSLVNA--DLLILDDL 187 (268)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHH--HHhcc---cccc-HHHHHHHhcCC--CEEEEecc
Confidence 39999999999999999999998655677888887776542111 01100 0000 11122333333 49999999
Q ss_pred --cccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCchhhh
Q 003088 741 --EKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIA 787 (849)
Q Consensus 741 --d~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~ 787 (849)
+..+...+..|+.+|+... .....+|+|||..+..+.
T Consensus 188 g~e~~t~~~~~~l~~iin~r~----------~~~~~~IiTsN~~~~eL~ 226 (268)
T PRK08116 188 GAERDTEWAREKVYNIIDSRY----------RKGLPTIVTTNLSLEELK 226 (268)
T ss_pred cCCCCCHHHHHHHHHHHHHHH----------HCCCCEEEECCCCHHHHH
Confidence 6678889999999998631 112358999999776543
No 425
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.61 E-value=2.3e-07 Score=106.08 Aligned_cols=136 Identities=14% Similarity=0.238 Sum_probs=90.8
Q ss_pred cceeecCCCCchHHHHHHHHHHhc--CCCCceeEeeccccccccccccccCCCCCccccccCcchhHHHHh-CCCeEEEE
Q 003088 661 AMLFCGPTGVGKTELAKSLAACYF--GSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRR-RPFTLLLL 737 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~l~--~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~i~~-~~~~vl~l 737 (849)
+++|+|++|+|||++++++++.+. ..+..++.+.+.++....... + +. . .+.+.+.... ....+|+|
T Consensus 143 pl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~-l-~~-------~-~~~~~~~~~~~~~~dvLiI 212 (450)
T PRK14087 143 PLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDI-L-QK-------T-HKEIEQFKNEICQNDVLII 212 (450)
T ss_pred ceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHH-H-HH-------h-hhHHHHHHHHhccCCEEEE
Confidence 499999999999999999999763 234567777776655421110 0 10 0 0112222221 22349999
Q ss_pred eCccccC--HHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHH
Q 003088 738 DEIEKAH--PDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVE 815 (849)
Q Consensus 738 DEid~l~--~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~ 815 (849)
||++.+. ...++.|+.++..-. + .+..+|+|+|..+..+.
T Consensus 213 DDiq~l~~k~~~~e~lf~l~N~~~--~--------~~k~iIltsd~~P~~l~---------------------------- 254 (450)
T PRK14087 213 DDVQFLSYKEKTNEIFFTIFNNFI--E--------NDKQLFFSSDKSPELLN---------------------------- 254 (450)
T ss_pred eccccccCCHHHHHHHHHHHHHHH--H--------cCCcEEEECCCCHHHHh----------------------------
Confidence 9999886 667888888886521 1 12257899987665432
Q ss_pred HHHhhCChHHhhccc--cEEEcCCCCHHHHccccC
Q 003088 816 ELKAYFRPELLNRID--EVVVFRSLEKAQVCQLPL 848 (849)
Q Consensus 816 ~l~~~~~pell~R~d--~~i~f~pl~~~~~~~I~~ 848 (849)
.+.+.|.+||. .++.+.|++.+++..|++
T Consensus 255 ----~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~ 285 (450)
T PRK14087 255 ----GFDNRLITRFNMGLSIAIQKLDNKTATAIIK 285 (450)
T ss_pred ----hccHHHHHHHhCCceeccCCcCHHHHHHHHH
Confidence 26788999994 688999999999888864
No 426
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.60 E-value=9.6e-08 Score=109.34 Aligned_cols=149 Identities=21% Similarity=0.276 Sum_probs=93.8
Q ss_pred CCCCccccHHHHHHHHHHHhcCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEE----------------
Q 003088 288 LIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMS---------------- 351 (849)
Q Consensus 288 ~l~~iiG~~~~i~~l~~~l~~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~---------------- 351 (849)
.|.+++|+...++.+.- ......+++|+||||+|||++++.++..+........+....+++
T Consensus 189 d~~~v~Gq~~~~~al~l--aa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~~~~~rPf 266 (506)
T PRK09862 189 DLSDVIGQEQGKRGLEI--TAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPF 266 (506)
T ss_pred CeEEEECcHHHHhhhhe--eccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccccCCcCCCCc
Confidence 56678898877766532 234567899999999999999999987763221111111111111
Q ss_pred ------eehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCCC--
Q 003088 352 ------LDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGE-- 423 (849)
Q Consensus 352 ------l~~~~~~~~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~~-- 423 (849)
.....++.|... .+ -..+....+++|||||++.+ ....++.|+..|+.+.
T Consensus 267 r~ph~~~s~~~l~GGg~~-------~~--pG~l~~A~gGvLfLDEi~e~-------------~~~~~~~L~~~LE~g~v~ 324 (506)
T PRK09862 267 RSPHHSASLTAMVGGGAI-------PG--PGEISLAHNGVLFLDELPEF-------------ERRTLDALREPIESGQIH 324 (506)
T ss_pred cCCCccchHHHHhCCCce-------eh--hhHhhhccCCEEecCCchhC-------------CHHHHHHHHHHHHcCcEE
Confidence 111112222110 00 01233445679999999988 5577888888887544
Q ss_pred -------------eEEEEccChHH---HH------------H-HhhccHHHHhccc-cEEecCCCHH
Q 003088 424 -------------LQCIASTTQDE---HR------------T-QFEKDKALARRFQ-PVLISEPSQE 460 (849)
Q Consensus 424 -------------i~vI~at~~~~---~~------------~-~~~~d~al~~Rf~-~i~~~~ps~~ 460 (849)
+.+|+|+|+.+ |. + .-.+..++++||+ .+.++.++.+
T Consensus 325 I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~ 391 (506)
T PRK09862 325 LSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPG 391 (506)
T ss_pred EecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHH
Confidence 57899999865 11 0 0246789999998 5999988766
No 427
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.59 E-value=2.3e-07 Score=87.87 Aligned_cols=118 Identities=25% Similarity=0.251 Sum_probs=67.8
Q ss_pred cceeecCCCCchHHHHHHHHHHhcCCCCceeEeecccccccccccc---ccC-CCCCccccccCcchhHHHHhCCCeEEE
Q 003088 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSK---LIG-SPPGYVGYEEGGLLTEAIRRRPFTLLL 736 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~---l~g-~~~g~vg~~~~~~l~~~i~~~~~~vl~ 736 (849)
+++|+||||||||++++.++..+......++.+++........... .+. ......+......+....+.....+|+
T Consensus 4 ~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vii 83 (148)
T smart00382 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVLI 83 (148)
T ss_pred EEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 5999999999999999999999855443578888776544322110 000 000111111111233333444458999
Q ss_pred EeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCC
Q 003088 737 LDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNV 781 (849)
Q Consensus 737 lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~ 781 (849)
|||++.+.......+........ .........+..+|+++|.
T Consensus 84 iDei~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 84 LDEITSLLDAEQEALLLLLEELR---LLLLLKSEKNLTVILTTND 125 (148)
T ss_pred EECCcccCCHHHHHHHHhhhhhH---HHHHHHhcCCCEEEEEeCC
Confidence 99999998877666554311000 0000012346788999995
No 428
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.59 E-value=2.2e-07 Score=97.17 Aligned_cols=116 Identities=16% Similarity=0.238 Sum_probs=67.4
Q ss_pred CCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhcccccc-chHHHHHHHHHHHHHhcCCeEEEEcC
Q 003088 312 NNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKER-GELEARVTTLISEIQKSGDVILFIDE 390 (849)
Q Consensus 312 ~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~~~~~~-g~~e~~l~~l~~~~~~~~~~ILfIDE 390 (849)
.+++|+|+||||||+++.+||..+... +..++.+++..+...-+.. .........+++.+.. ..+|+|||
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~-------g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~~--~dlLvIDD 170 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLR-------GKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLSN--VDLLVIDE 170 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhc-------CCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhcc--CCEEEEeC
Confidence 589999999999999999999998654 5566666766655311100 0001112234444443 35999999
Q ss_pred cchhhhCCCCCCCCCCccHHHHHHHhhhhc---CCCeEEEEccChH--HHHHHhhccHHHHhcc
Q 003088 391 VHTLIGSGTVGRGNKGTGLDISNLLKPSLG---RGELQCIASTTQD--EHRTQFEKDKALARRF 449 (849)
Q Consensus 391 i~~l~~~~~~~~~~~~~~~~~~~~L~~~le---~~~i~vI~at~~~--~~~~~~~~d~al~~Rf 449 (849)
++.... +.-....|..+++ .....+|.+||.. ++.+ .+...+.+|+
T Consensus 171 ig~~~~-----------s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l~~--~~g~ri~sRl 221 (244)
T PRK07952 171 IGVQTE-----------SRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMTK--LLGERVMDRM 221 (244)
T ss_pred CCCCCC-----------CHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHHHH--HhChHHHHHH
Confidence 988731 1112234444443 2345666677753 3333 2345555665
No 429
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.59 E-value=4.5e-08 Score=97.79 Aligned_cols=106 Identities=22% Similarity=0.353 Sum_probs=71.8
Q ss_pred cceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccccccCCCCCccccccCcchhHHHHhCCCeEEEEeCc
Q 003088 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRRRPFTLLLLDEI 740 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~i~~~~~~vl~lDEi 740 (849)
+++|+||+|||||++|.++++.+...+.+...++.+++.+...... . ......+...+...+ +|+|||+
T Consensus 49 ~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~--~-------~~~~~~~~~~l~~~d--lLilDDl 117 (178)
T PF01695_consen 49 NLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSR--S-------DGSYEELLKRLKRVD--LLILDDL 117 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCH--C-------CTTHCHHHHHHHTSS--CEEEETC
T ss_pred EEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccc--c-------ccchhhhcCcccccc--Eeccccc
Confidence 5999999999999999999998877778888888888766422211 1 011122344455554 9999999
Q ss_pred ccc--CHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCchhhhc
Q 003088 741 EKA--HPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAK 788 (849)
Q Consensus 741 d~l--~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~~ 788 (849)
... +....+.|+++|+... .+--.|+|||..++.+.+
T Consensus 118 G~~~~~~~~~~~l~~ii~~R~-----------~~~~tIiTSN~~~~~l~~ 156 (178)
T PF01695_consen 118 GYEPLSEWEAELLFEIIDERY-----------ERKPTIITSNLSPSELEE 156 (178)
T ss_dssp TSS---HHHHHCTHHHHHHHH-----------HT-EEEEEESS-HHHHHT
T ss_pred ceeeecccccccchhhhhHhh-----------cccCeEeeCCCchhhHhh
Confidence 765 4567888889888732 122477799998877654
No 430
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.59 E-value=1.5e-07 Score=108.88 Aligned_cols=134 Identities=18% Similarity=0.285 Sum_probs=89.7
Q ss_pred ceeecCCCCchHHHHHHHHHHhcC--CCCceeEeeccccccccccccccCCCCCccccccCcchhHHHHhCCCeEEEEeC
Q 003088 662 MLFCGPTGVGKTELAKSLAACYFG--SESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRRRPFTLLLLDE 739 (849)
Q Consensus 662 lL~~Gp~GtGKt~lA~~la~~l~~--~~~~~i~i~~~~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~i~~~~~~vl~lDE 739 (849)
++|||++|+|||+|+++|++.+.. .+..++.+++.++....... +.. .....+.+.++. ..+|+|||
T Consensus 317 L~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~a-l~~--------~~~~~f~~~y~~--~DLLlIDD 385 (617)
T PRK14086 317 LFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINS-IRD--------GKGDSFRRRYRE--MDILLVDD 385 (617)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHH-HHh--------ccHHHHHHHhhc--CCEEEEeh
Confidence 999999999999999999998743 24567888887765432111 000 001123333333 35999999
Q ss_pred ccccCH--HHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHH
Q 003088 740 IEKAHP--DIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEEL 817 (849)
Q Consensus 740 id~l~~--~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l 817 (849)
|+.+.. ..+..|+.+++.-. + .+..+|+|||..+..+.
T Consensus 386 Iq~l~gke~tqeeLF~l~N~l~--e--------~gk~IIITSd~~P~eL~------------------------------ 425 (617)
T PRK14086 386 IQFLEDKESTQEEFFHTFNTLH--N--------ANKQIVLSSDRPPKQLV------------------------------ 425 (617)
T ss_pred hccccCCHHHHHHHHHHHHHHH--h--------cCCCEEEecCCChHhhh------------------------------
Confidence 998843 45677777776521 1 12347789998765442
Q ss_pred HhhCChHHhhccc--cEEEcCCCCHHHHccccC
Q 003088 818 KAYFRPELLNRID--EVVVFRSLEKAQVCQLPL 848 (849)
Q Consensus 818 ~~~~~pell~R~d--~~i~f~pl~~~~~~~I~~ 848 (849)
.+.+.|.+||. .++.+.+++.+....|++
T Consensus 426 --~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~ 456 (617)
T PRK14086 426 --TLEDRLRNRFEWGLITDVQPPELETRIAILR 456 (617)
T ss_pred --hccHHHHhhhhcCceEEcCCCCHHHHHHHHH
Confidence 16788999994 688999999988888764
No 431
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.58 E-value=2.7e-07 Score=98.53 Aligned_cols=148 Identities=17% Similarity=0.275 Sum_probs=89.3
Q ss_pred HHHHHhcCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhccccccchHHHHHHHHHHHH---
Q 003088 302 IIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI--- 378 (849)
Q Consensus 302 l~~~l~~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~~~~~~g~~e~~l~~l~~~~--- 378 (849)
+++.+.. .+.++||+||+|||||++++.+-..+... ..-+..+.++..... ..+..+++..
T Consensus 25 ll~~l~~-~~~pvLl~G~~GtGKT~li~~~l~~l~~~-------~~~~~~~~~s~~Tts--------~~~q~~ie~~l~k 88 (272)
T PF12775_consen 25 LLDLLLS-NGRPVLLVGPSGTGKTSLIQNFLSSLDSD-------KYLVITINFSAQTTS--------NQLQKIIESKLEK 88 (272)
T ss_dssp HHHHHHH-CTEEEEEESSTTSSHHHHHHHHHHCSTTC-------CEEEEEEES-TTHHH--------HHHHHCCCTTECE
T ss_pred HHHHHHH-cCCcEEEECCCCCchhHHHHhhhccCCcc-------ccceeEeeccCCCCH--------HHHHHHHhhcEEc
Confidence 4444433 45689999999999999999876655321 111233344332211 1122221111
Q ss_pred --------HhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCC--------------CeEEEEccChHHHH
Q 003088 379 --------QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG--------------ELQCIASTTQDEHR 436 (849)
Q Consensus 379 --------~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~--------------~i~vI~at~~~~~~ 436 (849)
..++..|+||||++.-.+.. .++....++|+.+++.+ ++.+|+|+++..
T Consensus 89 ~~~~~~gP~~~k~lv~fiDDlN~p~~d~-------ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~-- 159 (272)
T PF12775_consen 89 RRGRVYGPPGGKKLVLFIDDLNMPQPDK-------YGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTG-- 159 (272)
T ss_dssp CTTEEEEEESSSEEEEEEETTT-S---T-------TS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTT--
T ss_pred CCCCCCCCCCCcEEEEEecccCCCCCCC-------CCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCC--
Confidence 01345799999999885432 34566788999888743 357889988743
Q ss_pred HHhhccHHHHhccccEEecCCCHHHHHHHHHHHHHHHH
Q 003088 437 TQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYE 474 (849)
Q Consensus 437 ~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL~~~~~~~~ 474 (849)
....+++.|.|.|..+.++.|+.+....|...+...+.
T Consensus 160 Gr~~is~R~~r~f~i~~~~~p~~~sl~~If~~il~~~l 197 (272)
T PF12775_consen 160 GRNPISPRFLRHFNILNIPYPSDESLNTIFSSILQSHL 197 (272)
T ss_dssp T--SHHHHHHTTEEEEE----TCCHHHHHHHHHHHHHT
T ss_pred CCCCCChHHhhheEEEEecCCChHHHHHHHHHHHhhhc
Confidence 23357899999999999999999999999998887553
No 432
>PF02861 Clp_N: Clp amino terminal domain; InterPro: IPR004176 This short domain is found in one or two copies at the amino terminus of ClpA and ClpB proteins from bacteria and eukaryotes. The function of these domains is uncertain but they may form a protein binding site []. The proteins are thought to be subunits of ATP-dependent proteases which act as chaperones to target the proteases to substrates.; GO: 0019538 protein metabolic process; PDB: 3FH2_A 3ZRJ_A 3ZRI_A 1QVR_C 3FES_C 2Y1R_F 3PXG_D 2Y1Q_A 3PXI_C 2K77_A ....
Probab=98.57 E-value=8.2e-08 Score=75.50 Aligned_cols=52 Identities=42% Similarity=0.677 Sum_probs=47.9
Q ss_pred HHHHHHHcCCCcCCHHHHHHHhhhcCCchhhHHHHhhcCCHHHHHHHHHHhh
Q 003088 182 AVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRL 233 (849)
Q Consensus 182 A~~~a~~~g~~~I~~ehlLlall~~~~~~a~~iL~~~gv~~~~l~~~~~~~~ 233 (849)
|.++|+++||.+|+++|||+||+.++++.+.++|+++|+|.+.+++.+.+.+
T Consensus 1 A~~~A~~~~~~~i~~eHlL~all~~~~~~~~~il~~~~id~~~l~~~i~~~l 52 (53)
T PF02861_consen 1 AQELARERGHQYISPEHLLLALLEDPDSIAARILKKLGIDPEQLKAAIEKAL 52 (53)
T ss_dssp HHHHHHHTTBSSE-HHHHHHHHHHHTTSHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHcCCCcccHHHHHHHHHhhhhHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 6789999999999999999999999999999999999999999999887664
No 433
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.57 E-value=2.1e-07 Score=106.29 Aligned_cols=136 Identities=17% Similarity=0.314 Sum_probs=84.4
Q ss_pred cceeecCCCCchHHHHHHHHHHhcCC--CCceeEeeccccccccccccccCCCCCccccccCcchhHHHHhCCCeEEEEe
Q 003088 661 AMLFCGPTGVGKTELAKSLAACYFGS--ESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRRRPFTLLLLD 738 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~l~~~--~~~~i~i~~~~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~i~~~~~~vl~lD 738 (849)
+++||||+|+|||++++++++.+... +..++.+++.++...... .+ . ......+.+..+ ....+|+||
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~-~~-~-------~~~~~~f~~~~~-~~~dvLlID 201 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVD-SM-K-------EGKLNEFREKYR-KKVDVLLID 201 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHH-HH-h-------cccHHHHHHHHH-hcCCEEEEe
Confidence 39999999999999999999987432 345777777665432111 00 0 000112222222 134699999
Q ss_pred CccccC--HHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHH
Q 003088 739 EIEKAH--PDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEE 816 (849)
Q Consensus 739 Eid~l~--~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~ 816 (849)
|++.+. ...+..|+..+..-. + .+..+|+|++..+..+.
T Consensus 202 Di~~l~~~~~~q~elf~~~n~l~--~--------~~k~iIitsd~~p~~l~----------------------------- 242 (440)
T PRK14088 202 DVQFLIGKTGVQTELFHTFNELH--D--------SGKQIVICSDREPQKLS----------------------------- 242 (440)
T ss_pred chhhhcCcHHHHHHHHHHHHHHH--H--------cCCeEEEECCCCHHHHH-----------------------------
Confidence 999874 345667777765411 0 12247777776554332
Q ss_pred HHhhCChHHhhccc--cEEEcCCCCHHHHccccC
Q 003088 817 LKAYFRPELLNRID--EVVVFRSLEKAQVCQLPL 848 (849)
Q Consensus 817 l~~~~~pell~R~d--~~i~f~pl~~~~~~~I~~ 848 (849)
.+.+.+.+||. .++.+.|++.+.+..|++
T Consensus 243 ---~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~ 273 (440)
T PRK14088 243 ---EFQDRLVSRFQMGLVAKLEPPDEETRKKIAR 273 (440)
T ss_pred ---HHHHHHhhHHhcCceEeeCCCCHHHHHHHHH
Confidence 14567888883 588899999888877763
No 434
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.57 E-value=5.8e-07 Score=96.82 Aligned_cols=150 Identities=13% Similarity=0.166 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccccccCCCCCcc
Q 003088 636 EAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYV 715 (849)
Q Consensus 636 ~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~v 715 (849)
.+++.+..++...+. ...+||+|+.|+||+.+|+.+++.+.+....- ++....... . .++....+.+
T Consensus 3 ~~~~~l~~~i~~~~l--------~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~--~~~~~~p~n--~-~~~d~~g~~i 69 (299)
T PRK07132 3 NWIKFLDNSATQNKI--------SHSFLLKSNYNEDIDEKILYFLNKFNNLQITN--LNEQELPAN--I-ILFDIFDKDL 69 (299)
T ss_pred hHHHHHHHHHHhCCC--------CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCC--CCCCCCCcc--e-EEeccCCCcC
Confidence 355666666654322 13489999999999999999999984421100 000000000 0 0010000111
Q ss_pred ccccCcchhHHHH-----hCCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCchhhhccc
Q 003088 716 GYEEGGLLTEAIR-----RRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKGR 790 (849)
Q Consensus 716 g~~~~~~l~~~i~-----~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~~~~ 790 (849)
+.++...+.+.+. ..++.|++||++|+++..++|.||+.||+ +..+++||++++.. .
T Consensus 70 ~vd~Ir~l~~~~~~~~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEE-----------Pp~~t~~il~~~~~-~------ 131 (299)
T PRK07132 70 SKSEFLSAINKLYFSSFVQSQKKILIIKNIEKTSNSLLNALLKTIEE-----------PPKDTYFLLTTKNI-N------ 131 (299)
T ss_pred CHHHHHHHHHHhccCCcccCCceEEEEecccccCHHHHHHHHHHhhC-----------CCCCeEEEEEeCCh-H------
Confidence 1111111112111 13567999999999999999999999998 45688899877632 1
Q ss_pred CCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHHHccc
Q 003088 791 HGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQL 846 (849)
Q Consensus 791 ~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~I 846 (849)
.+-|.+.+|+ .++.|.|++.+++...
T Consensus 132 -----------------------------kll~TI~SRc-~~~~f~~l~~~~l~~~ 157 (299)
T PRK07132 132 -----------------------------KVLPTIVSRC-QVFNVKEPDQQKILAK 157 (299)
T ss_pred -----------------------------hChHHHHhCe-EEEECCCCCHHHHHHH
Confidence 1668899999 8899999998887653
No 435
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=98.56 E-value=1.3e-07 Score=86.88 Aligned_cols=74 Identities=28% Similarity=0.482 Sum_probs=60.7
Q ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCC--CCceeEe
Q 003088 618 MLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGS--ESSMLRL 693 (849)
Q Consensus 618 ~~~~~l~~~l~~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~--~~~~i~i 693 (849)
.....|+..|.+.++||+-+.+.+..++...-. .+.|.+|+. +.|+|+|||||+.+++.||+.+|.. +.+++..
T Consensus 14 ~~~~~L~~~L~~~l~GQhla~~~v~~ai~~~l~-~~~p~KpLV-lSfHG~tGtGKn~v~~liA~~ly~~G~~S~~V~~ 89 (127)
T PF06309_consen 14 YNITGLEKDLQRNLFGQHLAVEVVVNAIKGHLA-NPNPRKPLV-LSFHGWTGTGKNFVSRLIAEHLYKSGMKSPFVHQ 89 (127)
T ss_pred CCHHHHHHHHHHHccCcHHHHHHHHHHHHHHHc-CCCCCCCEE-EEeecCCCCcHHHHHHHHHHHHHhcccCCCceee
Confidence 345678889999999999999999999987543 357899976 8899999999999999999998764 3444443
No 436
>PRK06526 transposase; Provisional
Probab=98.55 E-value=1.1e-07 Score=100.41 Aligned_cols=104 Identities=24% Similarity=0.395 Sum_probs=69.4
Q ss_pred cceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccccccCCCCCccccccCcchhHHHHh-CCCeEEEEeC
Q 003088 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRR-RPFTLLLLDE 739 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~i~~-~~~~vl~lDE 739 (849)
+++|+||||||||++|.+|+..+...+..+..+.+.++........ . .+.+...+.. ....+|+|||
T Consensus 100 nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~-----------~-~~~~~~~l~~l~~~dlLIIDD 167 (254)
T PRK06526 100 NVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAH-----------H-AGRLQAELVKLGRYPLLIVDE 167 (254)
T ss_pred eEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHH-----------h-cCcHHHHHHHhccCCEEEEcc
Confidence 4999999999999999999988765555666666665544321110 0 1122222222 2346999999
Q ss_pred ccccC--HHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCchhhh
Q 003088 740 IEKAH--PDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIA 787 (849)
Q Consensus 740 id~l~--~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~ 787 (849)
++..+ +..++.|+++++... .+..+|+|||.+...+.
T Consensus 168 ~g~~~~~~~~~~~L~~li~~r~-----------~~~s~IitSn~~~~~w~ 206 (254)
T PRK06526 168 VGYIPFEPEAANLFFQLVSSRY-----------ERASLIVTSNKPFGRWG 206 (254)
T ss_pred cccCCCCHHHHHHHHHHHHHHH-----------hcCCEEEEcCCCHHHHH
Confidence 99774 778888999997521 12348999999876543
No 437
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.54 E-value=6.7e-08 Score=106.32 Aligned_cols=185 Identities=17% Similarity=0.197 Sum_probs=97.3
Q ss_pred HHHHHhccccccHHHHHHHHHHHHHhhcCCCCC----CCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeecccc
Q 003088 623 LEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDP----NRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEY 698 (849)
Q Consensus 623 l~~~l~~~i~Gq~~~i~~l~~~l~~~~~g~~~~----~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~ 698 (849)
+-+.+.-.|+|.+.++..|.-++..... ...+ .+...|+||+|.|||||+.+-+.+++... .-+...+...
T Consensus 18 l~~s~aP~i~g~~~iK~aill~L~~~~~-~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~p----r~v~~~g~~~ 92 (331)
T PF00493_consen 18 LANSIAPSIYGHEDIKKAILLQLFGGVE-KNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAP----RSVYTSGKGS 92 (331)
T ss_dssp CHHHCSSTTTT-HHHHHHHCCCCTT--S-CCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-S----SEEEEECCGS
T ss_pred HHHHhCCcCcCcHHHHHHHHHHHHhccc-cccccccccccccceeeccchhhhHHHHHHHHHhhCC----ceEEECCCCc
Confidence 3344556789988877666444432111 0111 13345899999999999999998876541 2333333322
Q ss_pred ccccccccccCCCCCccccccCcchhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCC-CceeecC-CeEEE
Q 003088 699 MERHTVSKLIGSPPGYVGYEEGGLLTEAIRRRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSH-GRRVSFK-NALIV 776 (849)
Q Consensus 699 ~~~~~~~~l~g~~~g~vg~~~~~~l~~~i~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~-g~~~~~~-~~~iI 776 (849)
......... ...+. . .+-..-.+++-.+.+||++|||+|++..+..+.|+++||.+.++... |-...++ ++-|+
T Consensus 93 s~~gLta~~-~~d~~-~--~~~~leaGalvlad~GiccIDe~dk~~~~~~~~l~eaMEqq~isi~kagi~~~l~ar~svl 168 (331)
T PF00493_consen 93 SAAGLTASV-SRDPV-T--GEWVLEAGALVLADGGICCIDEFDKMKEDDRDALHEAMEQQTISIAKAGIVTTLNARCSVL 168 (331)
T ss_dssp TCCCCCEEE-CCCGG-T--SSECEEE-HHHHCTTSEEEECTTTT--CHHHHHHHHHHHCSCEEECTSSSEEEEE---EEE
T ss_pred ccCCcccee-ccccc-c--ceeEEeCCchhcccCceeeecccccccchHHHHHHHHHHcCeeccchhhhcccccchhhhH
Confidence 111100000 00000 0 00011224666778899999999999999999999999999998865 4444443 89999
Q ss_pred EecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEc-CCCC
Q 003088 777 MTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVF-RSLE 839 (849)
Q Consensus 777 ~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f-~pl~ 839 (849)
+++|+........ .. ..+++ .+.+.|++|||.++.+ .+.+
T Consensus 169 aa~NP~~g~~~~~----------~~---~~~ni----------~l~~~LLSRFDLif~l~D~~d 209 (331)
T PF00493_consen 169 AAANPKFGRYDPN----------KS---LSENI----------NLPPPLLSRFDLIFLLRDKPD 209 (331)
T ss_dssp EEE--TT--S-TT----------S----CGCCT-----------S-CCCHCC-SEEECC--TTT
T ss_pred HHHhhhhhhcchh----------hh---hHHhc----------ccchhhHhhcCEEEEeccccc
Confidence 9999853211110 00 00000 1778999999987654 5555
No 438
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.52 E-value=1.6e-06 Score=93.31 Aligned_cols=164 Identities=13% Similarity=0.081 Sum_probs=106.4
Q ss_pred HHHHHHHHHHhcCCCCCC-eEeCCCCChHHHHHHHHHHHhhhCCCCccc---cCCeEEEeehhhhhccccccchHHHHHH
Q 003088 297 TEIQRIIQILCRRTKNNP-ILLGESGVGKTAIAEGLAIRIVQAEVPVFL---LSKRIMSLDMGLLMAGAKERGELEARVT 372 (849)
Q Consensus 297 ~~i~~l~~~l~~~~~~ni-LL~GppGtGKT~la~~la~~l~~~~~p~~~---~~~~~~~l~~~~~~~~~~~~g~~e~~l~ 372 (849)
..++.+...+...+..|+ ||+|+.|+||+.+++.+++.+.+....... ....+..+|.. |. .. ..+.++
T Consensus 3 ~~~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~----g~-~i--~vd~Ir 75 (299)
T PRK07132 3 NWIKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIF----DK-DL--SKSEFL 75 (299)
T ss_pred hHHHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccC----CC-cC--CHHHHH
Confidence 356667777777677776 599999999999999999998553211000 00012222210 11 01 113345
Q ss_pred HHHHHHHh-----cCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCC--CeEEEEccChHHHHHHhhccHHH
Q 003088 373 TLISEIQK-----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG--ELQCIASTTQDEHRTQFEKDKAL 445 (849)
Q Consensus 373 ~l~~~~~~-----~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~--~i~vI~at~~~~~~~~~~~d~al 445 (849)
.+.+.+.. ++..|++||+++.+ +..++|.|+.+||++ ...+|..|+..+ .+-+.+
T Consensus 76 ~l~~~~~~~~~~~~~~KvvII~~~e~m-------------~~~a~NaLLK~LEEPp~~t~~il~~~~~~-----kll~TI 137 (299)
T PRK07132 76 SAINKLYFSSFVQSQKKILIIKNIEKT-------------SNSLLNALLKTIEEPPKDTYFLLTTKNIN-----KVLPTI 137 (299)
T ss_pred HHHHHhccCCcccCCceEEEEeccccc-------------CHHHHHHHHHHhhCCCCCeEEEEEeCChH-----hChHHH
Confidence 55555421 35689999999988 566889999999864 466666665444 677899
Q ss_pred HhccccEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhc
Q 003088 446 ARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495 (849)
Q Consensus 446 ~~Rf~~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~ 495 (849)
++||+.+.|.+++.++..+.|... .++++....++.++++
T Consensus 138 ~SRc~~~~f~~l~~~~l~~~l~~~----------~~~~~~a~~~a~~~~~ 177 (299)
T PRK07132 138 VSRCQVFNVKEPDQQKILAKLLSK----------NKEKEYNWFYAYIFSN 177 (299)
T ss_pred HhCeEEEECCCCCHHHHHHHHHHc----------CCChhHHHHHHHHcCC
Confidence 999999999999999888777431 2455555555555543
No 439
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.51 E-value=3.7e-07 Score=105.94 Aligned_cols=182 Identities=23% Similarity=0.323 Sum_probs=110.1
Q ss_pred CCccccHHHHHHHHHHHhc--CCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhc--------
Q 003088 290 DPVIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA-------- 359 (849)
Q Consensus 290 ~~iiG~~~~i~~l~~~l~~--~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~-------- 359 (849)
..++|.......+.+.+.. ....++++.|++||||+++|+++....... +.+++.+|+..+..
T Consensus 134 ~~lig~s~~~~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~-------~~~~~~~~c~~~~~~~~~~~lf 206 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHSPRA-------NGPFIALNMAAIPKDLIESELF 206 (463)
T ss_pred cceeecCHHHHHHHHHHHHHhCcCCeEEEECCCCCCHHHHHHHHHHhCCCC-------CCCeEEEeCCCCCHHHHHHHhc
Confidence 3577777666666655432 445678999999999999999998865433 44566666554311
Q ss_pred cccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCC-------------CeEE
Q 003088 360 GAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-------------ELQC 426 (849)
Q Consensus 360 ~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~-------------~i~v 426 (849)
|. ..|.+...............+++|||||++.| ..+.+..|..+++.+ ++++
T Consensus 207 g~-~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l-------------~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~ri 272 (463)
T TIGR01818 207 GH-EKGAFTGANTRRQGRFEQADGGTLFLDEIGDM-------------PLDAQTRLLRVLADGEFYRVGGRTPIKVDVRI 272 (463)
T ss_pred CC-CCCCCCCcccCCCCcEEECCCCeEEEEchhhC-------------CHHHHHHHHHHHhcCcEEECCCCceeeeeeEE
Confidence 10 01111100000001122334678999999999 456677777777644 3578
Q ss_pred EEccChHHHH--HHhhccHHHHhcccc--EEecCCC--HHHHHHHHHHHHHHHHhhcC---CccCHHHHHHHHHh
Q 003088 427 IASTTQDEHR--TQFEKDKALARRFQP--VLISEPS--QEDAVRILLGLREKYEAHHN---CKFTLEAINAAVHL 492 (849)
Q Consensus 427 I~at~~~~~~--~~~~~d~al~~Rf~~--i~~~~ps--~~e~~~iL~~~~~~~~~~~~---~~i~~~~l~~~a~l 492 (849)
|++|+.+--. ..-...+.|..|+.. |.+|++. .+|...++..++.++...++ ..++++++..+..+
T Consensus 273 i~~~~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~ 347 (463)
T TIGR01818 273 VAATHQNLEALVRQGKFREDLFHRLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQL 347 (463)
T ss_pred EEeCCCCHHHHHHcCCcHHHHHHHhCcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhC
Confidence 8888765311 111233567778864 6666654 56777777777666654443 46899888776553
No 440
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.50 E-value=1.7e-05 Score=87.23 Aligned_cols=213 Identities=19% Similarity=0.179 Sum_probs=122.4
Q ss_pred hhHHHHhhcCCCCccccHHHHHHHHHHH----hcCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeeh
Q 003088 279 DLTARASEELIDPVIGRETEIQRIIQIL----CRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM 354 (849)
Q Consensus 279 ~l~~~~~~~~l~~iiG~~~~i~~l~~~l----~~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~ 354 (849)
.+...+.| +.+.||+.+.+.+.+++ +......+.+.|-||+|||....-+-..+.... .....+.+++
T Consensus 142 ~l~~t~~p---~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~-----~~~~~v~inc 213 (529)
T KOG2227|consen 142 SLLNTAPP---GTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSS-----KSPVTVYINC 213 (529)
T ss_pred HHHhcCCC---CCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhc-----ccceeEEEee
Confidence 34444445 35899999999988876 456678899999999999999987766653321 1223344444
Q ss_pred hhhh--------------ccccccchHHHHHHHHHHHHHhc-CCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHH--hh
Q 003088 355 GLLM--------------AGAKERGELEARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLL--KP 417 (849)
Q Consensus 355 ~~~~--------------~~~~~~g~~e~~l~~l~~~~~~~-~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L--~~ 417 (849)
.++. ......+...+.+..+-.-.... ...|+++||+|.|...+ ..+.-.| .+
T Consensus 214 ~sl~~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~----------~~vLy~lFewp 283 (529)
T KOG2227|consen 214 TSLTEASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRS----------QTVLYTLFEWP 283 (529)
T ss_pred ccccchHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcc----------cceeeeehhcc
Confidence 3321 01111111111111121122222 36899999999996321 1222222 23
Q ss_pred hhcCCCeEEEEccChHHHHHHhhccHHHHhccc----cEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhh
Q 003088 418 SLGRGELQCIASTTQDEHRTQFEKDKALARRFQ----PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLS 493 (849)
Q Consensus 418 ~le~~~i~vI~at~~~~~~~~~~~d~al~~Rf~----~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls 493 (849)
.+-+.++++||..|.-+... ..-+.|..|+. .+.|++++.+|..+||...... ..-..+-+.+++.+|.-.
T Consensus 284 ~lp~sr~iLiGiANslDlTd--R~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~---~~t~~~~~~Aie~~ArKv 358 (529)
T KOG2227|consen 284 KLPNSRIILIGIANSLDLTD--RFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSE---ESTSIFLNAAIELCARKV 358 (529)
T ss_pred cCCcceeeeeeehhhhhHHH--HHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhc---ccccccchHHHHHHHHHh
Confidence 44467789999888776433 33355555553 4999999999999999876552 222333444555555443
Q ss_pred hcccccCcchhhHHHHHHHHhhHH
Q 003088 494 ARYISDRYLPDKAIDLVDEAGSRA 517 (849)
Q Consensus 494 ~~~~~~r~~p~~ai~ll~~a~~~~ 517 (849)
.+--.+ -.+|.+++..|...+
T Consensus 359 aa~SGD---lRkaLdv~R~aiEI~ 379 (529)
T KOG2227|consen 359 AAPSGD---LRKALDVCRRAIEIA 379 (529)
T ss_pred ccCchh---HHHHHHHHHHHHHHH
Confidence 332211 136666666665443
No 441
>PRK08181 transposase; Validated
Probab=98.50 E-value=1.8e-07 Score=99.32 Aligned_cols=105 Identities=18% Similarity=0.302 Sum_probs=69.9
Q ss_pred cceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccccccCCCCCccccccCcchhHHHHhCCCeEEEEeCc
Q 003088 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRRRPFTLLLLDEI 740 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~i~~~~~~vl~lDEi 740 (849)
+++|+||||||||++|.++++.+...+..++.+.+.++........ .... ...+...+.+ ..+|+|||+
T Consensus 108 nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~--------~~~~-~~~~l~~l~~--~dLLIIDDl 176 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVAR--------RELQ-LESAIAKLDK--FDLLILDDL 176 (269)
T ss_pred eEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHH--------hCCc-HHHHHHHHhc--CCEEEEecc
Confidence 4999999999999999999988766666777777776655321110 0000 0112222333 349999999
Q ss_pred cccC--HHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCchhhh
Q 003088 741 EKAH--PDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIA 787 (849)
Q Consensus 741 d~l~--~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~ 787 (849)
+..+ +..++.|+++++... .+.-+|+|||.++..+.
T Consensus 177 g~~~~~~~~~~~Lf~lin~R~-----------~~~s~IiTSN~~~~~w~ 214 (269)
T PRK08181 177 AYVTKDQAETSVLFELISARY-----------ERRSILITANQPFGEWN 214 (269)
T ss_pred ccccCCHHHHHHHHHHHHHHH-----------hCCCEEEEcCCCHHHHH
Confidence 8774 456778999997521 12248999999877654
No 442
>PRK15115 response regulator GlrR; Provisional
Probab=98.50 E-value=2.9e-07 Score=106.19 Aligned_cols=180 Identities=20% Similarity=0.297 Sum_probs=105.4
Q ss_pred CccccHHHHHHHHHHHh--cCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhc--------c
Q 003088 291 PVIGRETEIQRIIQILC--RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA--------G 360 (849)
Q Consensus 291 ~iiG~~~~i~~l~~~l~--~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~--------~ 360 (849)
.++|....+..+.+... .....+++|+|++|||||++|+++....... +.+++.+++..+.. |
T Consensus 135 ~lig~s~~~~~~~~~~~~~a~~~~~vli~Ge~GtGk~~lA~~ih~~s~r~-------~~~f~~i~c~~~~~~~~~~~lfg 207 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNASPRA-------SKPFIAINCGALPEQLLESELFG 207 (444)
T ss_pred cccccCHHHHHHHHHHHhhccCCCeEEEEcCCcchHHHHHHHHHHhcCCC-------CCCeEEEeCCCCCHHHHHHHhcC
Confidence 46677766666655432 2455689999999999999999998865433 45566666654310 0
Q ss_pred ccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCC-------------CeEEE
Q 003088 361 AKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-------------ELQCI 427 (849)
Q Consensus 361 ~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~-------------~i~vI 427 (849)
.. .|.+...............+++|||||++.| ..+.+..|..+++.+ ++++|
T Consensus 208 ~~-~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l-------------~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii 273 (444)
T PRK15115 208 HA-RGAFTGAVSNREGLFQAAEGGTLFLDEIGDM-------------PAPLQVKLLRVLQERKVRPLGSNRDIDIDVRII 273 (444)
T ss_pred CC-cCCCCCCccCCCCcEEECCCCEEEEEccccC-------------CHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEE
Confidence 00 0000000000000112234579999999999 566777888877654 45888
Q ss_pred EccChHHHHHH--hhccHHHHhccccEEecCCCHHHHHH----HHHHHHHHHHhhcC---CccCHHHHHHHHH
Q 003088 428 ASTTQDEHRTQ--FEKDKALARRFQPVLISEPSQEDAVR----ILLGLREKYEAHHN---CKFTLEAINAAVH 491 (849)
Q Consensus 428 ~at~~~~~~~~--~~~d~al~~Rf~~i~~~~ps~~e~~~----iL~~~~~~~~~~~~---~~i~~~~l~~~a~ 491 (849)
++|+.+-.... -...+.|..|+..+.|..|+-.+|.+ +++.+.+++...++ ..++++++..+..
T Consensus 274 ~~~~~~l~~~~~~~~f~~~l~~~l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~ 346 (444)
T PRK15115 274 SATHRDLPKAMARGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMT 346 (444)
T ss_pred EeCCCCHHHHHHcCCccHHHHHhhceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHh
Confidence 88886421110 12335566677766666666665544 44445554433332 2588988877654
No 443
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.48 E-value=3.4e-07 Score=86.58 Aligned_cols=109 Identities=18% Similarity=0.248 Sum_probs=67.8
Q ss_pred CCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhh--------------ccccccchHHHHHHHHH
Q 003088 310 TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM--------------AGAKERGELEARVTTLI 375 (849)
Q Consensus 310 ~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~--------------~~~~~~g~~e~~l~~l~ 375 (849)
....++++||+|+|||++++.+++.+........ ...++.+++.... ...............+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~ 80 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKN--HPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLI 80 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCC--CEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccC--CCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHH
Confidence 4567899999999999999999998753100000 3445555543322 01111123444555566
Q ss_pred HHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCCCeEEEEccCh
Q 003088 376 SEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQ 432 (849)
Q Consensus 376 ~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~~i~vI~at~~ 432 (849)
+.+...+..+|+|||+|.+. .....+.|+...++..+.+|.++++
T Consensus 81 ~~l~~~~~~~lviDe~~~l~------------~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 81 DALDRRRVVLLVIDEADHLF------------SDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHCTEEEEEEETTHHHH------------THHHHHHHHHHTCSCBEEEEEEESS
T ss_pred HHHHhcCCeEEEEeChHhcC------------CHHHHHHHHHHHhCCCCeEEEEECh
Confidence 66666655699999999984 2466788888888888888887776
No 444
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.47 E-value=1e-06 Score=88.57 Aligned_cols=172 Identities=23% Similarity=0.287 Sum_probs=114.4
Q ss_pred ccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeecccccccccccccc
Q 003088 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLI 708 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~ 708 (849)
..++|-+...+.+.+.-.+-..|.+. .|+|++|.-||||+.+.|++...+.+.+..+|.++-.++..-
T Consensus 60 ~~l~Gvd~qk~~L~~NT~~F~~G~pA-----NnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~~L------- 127 (287)
T COG2607 60 ADLVGVDRQKEALVRNTEQFAEGLPA-----NNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLATL------- 127 (287)
T ss_pred HHHhCchHHHHHHHHHHHHHHcCCcc-----cceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHhhH-------
Confidence 34788888888888877776666553 469999999999999999999999887888888887766431
Q ss_pred CCCCCccccccCcchhHHHHhCC-CeEEEEeCccccC-HHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCC---c
Q 003088 709 GSPPGYVGYEEGGLLTEAIRRRP-FTLLLLDEIEKAH-PDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVG---S 783 (849)
Q Consensus 709 g~~~g~vg~~~~~~l~~~i~~~~-~~vl~lDEid~l~-~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~---~ 783 (849)
..+.+.++..+ .=|||+|+.--=+ ......|-.+||.|.-. ...|++|.+|||.. +
T Consensus 128 ------------p~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~-------rP~NVl~YATSNRRHLl~ 188 (287)
T COG2607 128 ------------PDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALEGGVEG-------RPANVLFYATSNRRHLLP 188 (287)
T ss_pred ------------HHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhcCCccc-------CCCeEEEEEecCCccccc
Confidence 23455566555 3589999885443 34556666667654311 34599999999974 2
Q ss_pred hhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHHHccccC
Q 003088 784 TTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQLPL 848 (849)
Q Consensus 784 ~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~I~~ 848 (849)
+.+.+. .++.. +-- -...+.+ .-.|-+||...+-|.|.+.++..+|++
T Consensus 189 e~~~dn----~~~~~---eih----~~eaveE------KlSlSDRFGLwL~F~~~~Q~~YL~~V~ 236 (287)
T COG2607 189 EDMKDN----EGSTG---EIH----PSEAVEE------KLSLSDRFGLWLSFYPCDQDEYLKIVD 236 (287)
T ss_pred HhhhhC----CCccc---ccC----hhHHHHH------hhchhhhcceeecccCCCHHHHHHHHH
Confidence 222111 11110 000 0001111 123569999999999999999887763
No 445
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.46 E-value=2e-06 Score=91.80 Aligned_cols=144 Identities=13% Similarity=0.172 Sum_probs=97.2
Q ss_pred cHHHHHHHHHHHhcCCCCCC-eEeCCCCChHHHHHHHHHHHhhhCCCCcc--c---c---------CCeEEEeehhhhhc
Q 003088 295 RETEIQRIIQILCRRTKNNP-ILLGESGVGKTAIAEGLAIRIVQAEVPVF--L---L---------SKRIMSLDMGLLMA 359 (849)
Q Consensus 295 ~~~~i~~l~~~l~~~~~~ni-LL~GppGtGKT~la~~la~~l~~~~~p~~--~---~---------~~~~~~l~~~~~~~ 359 (849)
+...++.+...+...+..|. ||+|| +||+++|+.+|+.+.+.+.... . . +..++.+...
T Consensus 7 q~~~~~~L~~~~~~~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~---- 80 (290)
T PRK07276 7 QPKVFQRFQTILEQDRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQ---- 80 (290)
T ss_pred HHHHHHHHHHHHHcCCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCC----
Confidence 44567788888887776665 88995 7899999999999876542110 0 0 1112222110
Q ss_pred cccccchHHHHHHHHHHHHHh----cCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCC--CeEEEEccChH
Q 003088 360 GAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG--ELQCIASTTQD 433 (849)
Q Consensus 360 ~~~~~g~~e~~l~~l~~~~~~----~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~--~i~vI~at~~~ 433 (849)
|. .--.+.++.+.+.+.. ++..|++||++|.| ...+.|.|++.||.+ +.++|..|+..
T Consensus 81 ~~---~I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m-------------~~~AaNaLLKtLEEPp~~t~~iL~t~~~ 144 (290)
T PRK07276 81 GQ---VIKTDTIRELVKNFSQSGYEGKQQVFIIKDADKM-------------HVNAANSLLKVIEEPQSEIYIFLLTNDE 144 (290)
T ss_pred CC---cCCHHHHHHHHHHHhhCcccCCcEEEEeehhhhc-------------CHHHHHHHHHHhcCCCCCeEEEEEECCh
Confidence 10 1113445555555543 44579999999999 567899999999964 36777777666
Q ss_pred HHHHHhhccHHHHhccccEEecCCCHHHHHHHH
Q 003088 434 EHRTQFEKDKALARRFQPVLISEPSQEDAVRIL 466 (849)
Q Consensus 434 ~~~~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL 466 (849)
+ .+-|.++|||+.|.|+. +.++..++|
T Consensus 145 ~-----~lLpTI~SRcq~i~f~~-~~~~~~~~L 171 (290)
T PRK07276 145 N-----KVLPTIKSRTQIFHFPK-NEAYLIQLL 171 (290)
T ss_pred h-----hCchHHHHcceeeeCCC-cHHHHHHHH
Confidence 5 78899999999999976 666655555
No 446
>KOG1808 consensus AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.46 E-value=2e-06 Score=108.99 Aligned_cols=141 Identities=21% Similarity=0.205 Sum_probs=92.9
Q ss_pred CCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhc--cccccchHHHHHHHHHHHHHhcCCeEE
Q 003088 309 RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA--GAKERGELEARVTTLISEIQKSGDVIL 386 (849)
Q Consensus 309 ~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~--~~~~~g~~e~~l~~l~~~~~~~~~~IL 386 (849)
.++..+||.||.|+|||.++..+|++....-++..... ..|+...+. -+...|++.-+-..++.+++++ .++
T Consensus 438 ~~~~pillqG~tssGKtsii~~la~~~g~~~vrinnhe----htd~qeyig~y~~~~~g~l~freg~LV~Alr~G--~~~ 511 (1856)
T KOG1808|consen 438 SGKFPILLQGPTSSGKTSIIKELARATGKNIVRINNHE----HTDLQEYIGTYVADDNGDLVFREGVLVQALRNG--DWI 511 (1856)
T ss_pred cCCCCeEEecCcCcCchhHHHHHHHHhccCceehhccc----cchHHHHHHhhhcCCCCCeeeehhHHHHHHHhC--CEE
Confidence 45568999999999999999999999844322211100 122333332 2334566666666777777654 699
Q ss_pred EEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCCCe---------------EEEEccChHH--HHHHhhccHHHHhcc
Q 003088 387 FIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGEL---------------QCIASTTQDE--HRTQFEKDKALARRF 449 (849)
Q Consensus 387 fIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~~i---------------~vI~at~~~~--~~~~~~~d~al~~Rf 449 (849)
|+||++.. ..++.+.|..+++.++= .++.+|-.+. |.....+..+|++||
T Consensus 512 vlD~lnla-------------~~dvL~aLnrllddnRel~ipe~~rlv~~h~~f~lfatqn~~~~y~grk~lsRa~~~rf 578 (1856)
T KOG1808|consen 512 VLDELNLA-------------PHDVLEALNRLLDDNRELFIPETQRLVKAHPEFMLFATQNPPGTYGGRKILSRALRNRF 578 (1856)
T ss_pred Eecccccc-------------chHHHHHHHhhhhhhccccccccceeeccCcchhhhhhccCccccchhhhhhhcccccc
Confidence 99999987 35667777777754221 1223333332 555567778899999
Q ss_pred ccEEecCCCHHHHHHHHHH
Q 003088 450 QPVLISEPSQEDAVRILLG 468 (849)
Q Consensus 450 ~~i~~~~ps~~e~~~iL~~ 468 (849)
..++|.....++...|+..
T Consensus 579 ~e~~f~~~~e~e~~~i~~~ 597 (1856)
T KOG1808|consen 579 IELHFDDIGEEELEEILEH 597 (1856)
T ss_pred hhhhhhhcCchhhhhhhcc
Confidence 9888888888888888754
No 447
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.45 E-value=3.8e-07 Score=105.67 Aligned_cols=179 Identities=17% Similarity=0.218 Sum_probs=105.7
Q ss_pred CCCccccHHHHHHHHHHH--hcCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhc-------
Q 003088 289 IDPVIGRETEIQRIIQIL--CRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA------- 359 (849)
Q Consensus 289 l~~iiG~~~~i~~l~~~l--~~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~------- 359 (849)
+..++|....+..+.+.+ ......+++++|++||||+++|+++....... +.+++.+++..+..
T Consensus 142 ~~~ii~~S~~~~~~~~~~~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~-------~~~~~~i~c~~~~~~~~~~~l 214 (457)
T PRK11361 142 WGHILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNSRRA-------KGPFIKVNCAALPESLLESEL 214 (457)
T ss_pred ccceecccHHHhHHHHHHHHHcCCCcEEEEEcCCCccHHHHHHHHHHhCCCC-------CCCeEEEECCCCCHHHHHHHh
Confidence 345777777776666654 23455789999999999999999998765332 34566666654321
Q ss_pred -cc---cccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCC-------------
Q 003088 360 -GA---KERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG------------- 422 (849)
Q Consensus 360 -~~---~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~------------- 422 (849)
|. ...|....+ ........+++|||||++.| ..+.+..|..+++.+
T Consensus 215 fg~~~~~~~~~~~~~----~g~~~~a~~gtl~ld~i~~l-------------~~~~q~~L~~~l~~~~~~~~~~~~~~~~ 277 (457)
T PRK11361 215 FGHEKGAFTGAQTLR----QGLFERANEGTLLLDEIGEM-------------PLVLQAKLLRILQEREFERIGGHQTIKV 277 (457)
T ss_pred cCCCCCCCCCCCCCC----CCceEECCCCEEEEechhhC-------------CHHHHHHHHHHHhcCcEEeCCCCceeee
Confidence 00 000000000 00122234579999999999 456677777777643
Q ss_pred CeEEEEccChHHHH--HHhhccHHHHhccccEEecCCCHHHHH----HHHHHHHHHHHhhcC---CccCHHHHHHHHH
Q 003088 423 ELQCIASTTQDEHR--TQFEKDKALARRFQPVLISEPSQEDAV----RILLGLREKYEAHHN---CKFTLEAINAAVH 491 (849)
Q Consensus 423 ~i~vI~at~~~~~~--~~~~~d~al~~Rf~~i~~~~ps~~e~~----~iL~~~~~~~~~~~~---~~i~~~~l~~~a~ 491 (849)
++++|++|+.+--. .--...+.+..|+..+.+..|+..+|. .++..+..++....+ ..++++++..+..
T Consensus 278 ~~rii~~t~~~l~~~~~~g~~~~~l~~~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~ 355 (457)
T PRK11361 278 DIRIIAATNRDLQAMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTA 355 (457)
T ss_pred ceEEEEeCCCCHHHHHHcCCchHHHHHHhccceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHc
Confidence 36899998865210 001234566677776666655544443 344455555543322 4688888776544
No 448
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.45 E-value=5.2e-07 Score=106.01 Aligned_cols=63 Identities=19% Similarity=0.229 Sum_probs=49.3
Q ss_pred CCHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHh
Q 003088 612 ITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACY 683 (849)
Q Consensus 612 ~~~~~~~~~~~l~~~l~~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l 683 (849)
..|.+++++..+.+ ++||++.+..+...+.....+. .+...++|+||||||||++++.++..+
T Consensus 72 ~pW~eKyrP~~lde-----l~~~~~ki~~l~~~l~~~~~~~----~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 72 EPWVEKYKPETQHE-----LAVHKKKIEEVETWLKAQVLEN----APKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred CchHHHhCCCCHHH-----hcCcHHHHHHHHHHHHhccccc----CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46888888877755 8999999999988887543321 222238999999999999999999876
No 449
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.44 E-value=3.8e-06 Score=93.68 Aligned_cols=204 Identities=11% Similarity=0.093 Sum_probs=120.9
Q ss_pred hhhhhHHHHhhcCCCCccccHHHHHHHHHHHh-----cCCC--CCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCe
Q 003088 276 FCVDLTARASEELIDPVIGRETEIQRIIQILC-----RRTK--NNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKR 348 (849)
Q Consensus 276 ~~~~l~~~~~~~~l~~iiG~~~~i~~l~~~l~-----~~~~--~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~ 348 (849)
-.-.|+++|+|.+++++--...-+..+.++|. .+.. +-+||+||+||||||.++.|++++. ..
T Consensus 68 ~~elW~eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskelg----------~~ 137 (634)
T KOG1970|consen 68 EFELWVEKYKPRTLEELAVHKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKELG----------YQ 137 (634)
T ss_pred ccchhHHhcCcccHHHHhhhHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhhC----------ce
Confidence 34579999999999999888888888888886 3332 2358899999999999999999983 22
Q ss_pred EEEee----------hhhhhccc--ccc---chHHHHHHHHH--HHHH------hcCCeEEEEcCcchhhhCCCCCCCCC
Q 003088 349 IMSLD----------MGLLMAGA--KER---GELEARVTTLI--SEIQ------KSGDVILFIDEVHTLIGSGTVGRGNK 405 (849)
Q Consensus 349 ~~~l~----------~~~~~~~~--~~~---g~~e~~l~~l~--~~~~------~~~~~ILfIDEi~~l~~~~~~~~~~~ 405 (849)
+.+-. +.....+. .+. ..+|..+-... ..+. ...+.+|+|||+-..+...
T Consensus 138 ~~Ew~Npi~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d------- 210 (634)
T KOG1970|consen 138 LIEWSNPINLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRD------- 210 (634)
T ss_pred eeeecCCccccccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhhh-------
Confidence 21110 00000000 111 12222221110 1111 1235689999998886432
Q ss_pred CccHHHHHHHhhhhcCCCeEEEEc-------cChHHHHHHhhccHHHHhccccEEecCCCHHHHHHHHHHHHHHHHhh-c
Q 003088 406 GTGLDISNLLKPSLGRGELQCIAS-------TTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAH-H 477 (849)
Q Consensus 406 ~~~~~~~~~L~~~le~~~i~vI~a-------t~~~~~~~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL~~~~~~~~~~-~ 477 (849)
....+.+.|..+...+.+.+|.. .+.+.|+.+ -.|-...-|...|.|.+-...-..+.|..++...... .
T Consensus 211 -~~~~f~evL~~y~s~g~~PlIf~iTd~~~~g~nnq~rlf-~~d~q~~~ri~~IsFNPIa~T~MKK~L~ric~~e~~~~s 288 (634)
T KOG1970|consen 211 -DSETFREVLRLYVSIGRCPLIFIITDSLSNGNNNQDRLF-PKDIQEEPRISNISFNPIAPTIMKKFLKRICRIEANKKS 288 (634)
T ss_pred -hHHHHHHHHHHHHhcCCCcEEEEEeccccCCCcchhhhc-hhhhhhccCcceEeecCCcHHHHHHHHHHHHHHhccccc
Confidence 23456777777777766433322 223344432 2233344477789999999999999998887643221 1
Q ss_pred CCccCH-HHHHHHHHhhhcccc
Q 003088 478 NCKFTL-EAINAAVHLSARYIS 498 (849)
Q Consensus 478 ~~~i~~-~~l~~~a~ls~~~~~ 498 (849)
++.+.+ ..++.++..+.+.+.
T Consensus 289 ~~k~~~~~~v~~i~~~s~GDIR 310 (634)
T KOG1970|consen 289 GIKVPDTAEVELICQGSGGDIR 310 (634)
T ss_pred CCcCchhHHHHHHHHhcCccHH
Confidence 233333 345666666666553
No 450
>PRK06620 hypothetical protein; Validated
Probab=98.43 E-value=6.6e-07 Score=92.19 Aligned_cols=23 Identities=35% Similarity=0.460 Sum_probs=20.7
Q ss_pred cceeecCCCCchHHHHHHHHHHh
Q 003088 661 AMLFCGPTGVGKTELAKSLAACY 683 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~l 683 (849)
+++||||||||||++++++++..
T Consensus 46 ~l~l~Gp~G~GKThLl~a~~~~~ 68 (214)
T PRK06620 46 TLLIKGPSSSGKTYLTKIWQNLS 68 (214)
T ss_pred eEEEECCCCCCHHHHHHHHHhcc
Confidence 49999999999999999988763
No 451
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=9.4e-07 Score=105.67 Aligned_cols=121 Identities=24% Similarity=0.363 Sum_probs=91.8
Q ss_pred CccccHHHHHHHHHHHhcCC--------CCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhh----
Q 003088 291 PVIGRETEIQRIIQILCRRT--------KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM---- 358 (849)
Q Consensus 291 ~iiG~~~~i~~l~~~l~~~~--------~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~---- 358 (849)
.|+||++.+..+.+++.+.+ ...++|.||.|||||-+|++||..+... ...++.+|++.+.
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgs-------e~~~IriDmse~~evsk 635 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGS-------EENFIRLDMSEFQEVSK 635 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCC-------ccceEEechhhhhhhhh
Confidence 58999999999999874422 2235999999999999999999998644 4567888988632
Q ss_pred ---ccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCCC------------
Q 003088 359 ---AGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGE------------ 423 (849)
Q Consensus 359 ---~~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~~------------ 423 (849)
....|+|..+ ...+.++++....+|+++|||+.- ..++++.|+.++++|+
T Consensus 636 ligsp~gyvG~e~--gg~LteavrrrP~sVVLfdeIEkA-------------h~~v~n~llq~lD~GrltDs~Gr~Vd~k 700 (898)
T KOG1051|consen 636 LIGSPPGYVGKEE--GGQLTEAVKRRPYSVVLFEEIEKA-------------HPDVLNILLQLLDRGRLTDSHGREVDFK 700 (898)
T ss_pred ccCCCcccccchh--HHHHHHHHhcCCceEEEEechhhc-------------CHHHHHHHHHHHhcCccccCCCcEeecc
Confidence 2233555433 345667777788899999999987 6789999999998655
Q ss_pred -eEEEEccChH
Q 003088 424 -LQCIASTTQD 433 (849)
Q Consensus 424 -i~vI~at~~~ 433 (849)
.+||.|+|..
T Consensus 701 N~I~IMTsn~~ 711 (898)
T KOG1051|consen 701 NAIFIMTSNVG 711 (898)
T ss_pred ceEEEEecccc
Confidence 4778777754
No 452
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.42 E-value=5.6e-07 Score=98.34 Aligned_cols=108 Identities=19% Similarity=0.285 Sum_probs=72.2
Q ss_pred ccceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccccccCCCCCccccccCcchhHHHHhCCCeEEEEeC
Q 003088 660 AAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRRRPFTLLLLDE 739 (849)
Q Consensus 660 ~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~i~~~~~~vl~lDE 739 (849)
.+++|+||+|||||++|.+||+.+...+..++.+...++........+ .. ..+.....+.+.... +|+|||
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~-~~------~~~~~~~~~~l~~~D--LLIIDD 254 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRF-NN------DKELEEVYDLLINCD--LLIIDD 254 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHh-cc------chhHHHHHHHhccCC--EEEEec
Confidence 359999999999999999999998777777888888776543211100 00 000001123334444 999999
Q ss_pred cc--ccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCchhh
Q 003088 740 IE--KAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTI 786 (849)
Q Consensus 740 id--~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l 786 (849)
+. ..++..++.|+.+++.... ..--+|+|||..++.+
T Consensus 255 lG~e~~t~~~~~~Lf~iin~R~~----------~~k~tIiTSNl~~~el 293 (329)
T PRK06835 255 LGTEKITEFSKSELFNLINKRLL----------RQKKMIISTNLSLEEL 293 (329)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHH----------CCCCEEEECCCCHHHH
Confidence 95 5577788999999986321 1234899999977654
No 453
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.41 E-value=5.8e-07 Score=102.01 Aligned_cols=186 Identities=16% Similarity=0.190 Sum_probs=108.8
Q ss_pred HHHHHHHhccccccHHHHHHHHHHHHHhhcCCC-C--CCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccc
Q 003088 621 VGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLK-D--PNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSE 697 (849)
Q Consensus 621 ~~l~~~l~~~i~Gq~~~i~~l~~~l~~~~~g~~-~--~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~ 697 (849)
..|.+.+.-.|.|++++++.+.-++.-+...-. . .-+..-|+||+|.||||||.+-+.+++.+-+. ++..+..
T Consensus 421 ~lLa~SiAPsIye~edvKkglLLqLfGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg----~yTSGkG 496 (804)
T KOG0478|consen 421 ELLARSIAPSIYELEDVKKGLLLQLFGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRG----VYTSGKG 496 (804)
T ss_pred HHHHHhhchhhhcccchhhhHHHHHhcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcc----eeecCCc
Confidence 345556667799999999888777643211100 0 12233579999999999999999999986321 1111100
Q ss_pred cccccccccccCCCCCcccccc--Ccc--hhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCC-CceeecC-
Q 003088 698 YMERHTVSKLIGSPPGYVGYEE--GGL--LTEAIRRRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSH-GRRVSFK- 771 (849)
Q Consensus 698 ~~~~~~~~~l~g~~~g~vg~~~--~~~--l~~~i~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~-g~~~~~~- 771 (849)
-. -.|-. .||..+. ++. -.+++--+.+|+-.|||+|||+...++.|+++||...++... |--..+.
T Consensus 497 sS-------avGLT-ayVtrd~dtkqlVLesGALVLSD~GiCCIDEFDKM~dStrSvLhEvMEQQTvSIAKAGII~sLNA 568 (804)
T KOG0478|consen 497 SS-------AVGLT-AYVTKDPDTRQLVLESGALVLSDNGICCIDEFDKMSDSTRSVLHEVMEQQTLSIAKAGIIASLNA 568 (804)
T ss_pred cc-------hhcce-eeEEecCccceeeeecCcEEEcCCceEEchhhhhhhHHHHHHHHHHHHHhhhhHhhcceeeeccc
Confidence 00 00000 0222111 111 112444567899999999999999999999999998777654 3222332
Q ss_pred CeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhcccc-EEEcCCCCHH
Q 003088 772 NALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDE-VVVFRSLEKA 841 (849)
Q Consensus 772 ~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~-~i~f~pl~~~ 841 (849)
.+-||+++|+--.. | ++... +.+-+ .+.|.|++|||. .+.+.+.++.
T Consensus 569 R~SVLAaANP~~sk----------y--np~k~-----i~eNI------~LpptLLSRFDLIylllD~~DE~ 616 (804)
T KOG0478|consen 569 RCSVLAAANPIRSK----------Y--NPNKS-----IIENI------NLPPTLLSRFDLIFLLLDKPDER 616 (804)
T ss_pred cceeeeeecccccc----------C--CCCCc-----hhhcc------CCChhhhhhhcEEEEEecCcchh
Confidence 66677777752111 1 11100 00011 178999999996 4456665543
No 454
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.41 E-value=1.9e-06 Score=94.27 Aligned_cols=128 Identities=18% Similarity=0.231 Sum_probs=74.0
Q ss_pred CCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhcccc---ccchHHHHHHHHHHHHHhcCCeEE
Q 003088 310 TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAK---ERGELEARVTTLISEIQKSGDVIL 386 (849)
Q Consensus 310 ~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~~~~---~~g~~e~~l~~l~~~~~~~~~~IL 386 (849)
...+++|+||+|||||+|+.++|+++... +..++.++...+...-+ .....+ ....++.+.+. .+|
T Consensus 182 ~~~~Lll~G~~GtGKThLa~aIa~~l~~~-------g~~V~y~t~~~l~~~l~~~~~~~~~~--~~~~~~~l~~~--DLL 250 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNCIAKELLDR-------GKSVIYRTADELIEILREIRFNNDKE--LEEVYDLLINC--DLL 250 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHC-------CCeEEEEEHHHHHHHHHHHHhccchh--HHHHHHHhccC--CEE
Confidence 34899999999999999999999998654 56667776655542110 001000 11113333333 499
Q ss_pred EEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCCCeEEEEccCh--HHHHHHhhccHHHHhccc----cEEecCCC
Q 003088 387 FIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQ--DEHRTQFEKDKALARRFQ----PVLISEPS 458 (849)
Q Consensus 387 fIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~~i~vI~at~~--~~~~~~~~~d~al~~Rf~----~i~~~~ps 458 (849)
+|||++...... .....+.+++.....++. .+|.|||. .++.. ..++.+.+|+. .|.|...+
T Consensus 251 IIDDlG~e~~t~-------~~~~~Lf~iin~R~~~~k-~tIiTSNl~~~el~~--~~~eri~SRL~~~~~~i~~~G~d 318 (329)
T PRK06835 251 IIDDLGTEKITE-------FSKSELFNLINKRLLRQK-KMIISTNLSLEELLK--TYSERISSRLLGNFTLLKFYGED 318 (329)
T ss_pred EEeccCCCCCCH-------HHHHHHHHHHHHHHHCCC-CEEEECCCCHHHHHH--HHhHHHHHHHHcCCEEEEecCcC
Confidence 999998873221 112344555555555554 45555553 33333 23567888773 35554433
No 455
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=98.40 E-value=2.2e-06 Score=97.51 Aligned_cols=149 Identities=23% Similarity=0.304 Sum_probs=94.3
Q ss_pred hccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeec----ccccc-c-
Q 003088 628 KKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDM----SEYME-R- 701 (849)
Q Consensus 628 ~~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~----~~~~~-~- 701 (849)
++.++|+++++++|...+..+..|+.... + .++|+||||+|||++|+.|++.+- ..++..+.. +.+.+ .
T Consensus 75 F~d~yGlee~ieriv~~l~~Aa~gl~~~~-~--IL~LvGPpG~GKSsLa~~la~~le--~~~~Y~~kg~~~~sP~~e~PL 149 (644)
T PRK15455 75 FEEFYGMEEAIEQIVSYFRHAAQGLEEKK-Q--ILYLLGPVGGGKSSLAERLKSLME--RVPIYVLKANGERSPVNESPL 149 (644)
T ss_pred hhcccCcHHHHHHHHHHHHHHHHhcCCCC-c--eEEEecCCCCCchHHHHHHHHHHH--hCcceeecCCCCCCCCCCCCC
Confidence 45689999999999999988888876433 3 499999999999999999999872 224544433 10000 0
Q ss_pred c---------ccccccCCCC-----------------------------------Cccc--ccc-C-------c------
Q 003088 702 H---------TVSKLIGSPP-----------------------------------GYVG--YEE-G-------G------ 721 (849)
Q Consensus 702 ~---------~~~~l~g~~~-----------------------------------g~vg--~~~-~-------~------ 721 (849)
+ .....+|-+. ..+| ..+ + .
T Consensus 150 ~L~p~~~~~~~le~~~gi~~r~i~g~lsP~~r~rL~e~~Gd~~~~~V~r~~~S~~~riGIg~~eP~D~~nQD~s~L~G~v 229 (644)
T PRK15455 150 GLFDPDEDGPILEEEYGIPRRYLGTIMSPWAVKRLHEFGGDISKFRVVKVYPSILRQIAIAKTEPGDENNQDISSLVGKV 229 (644)
T ss_pred CCCChhhhHHHHHHHhCCCccccCCCCCHHHHHHHHHhCCCchheEEEEEeeccccceEEEecCCCCCCCCChhHhccce
Confidence 0 0000111110 0011 000 0 0
Q ss_pred ----------------chhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCC
Q 003088 722 ----------------LLTEAIRRRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNV 781 (849)
Q Consensus 722 ----------------~l~~~i~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~ 781 (849)
.+.+.+..+..|++=|=|+-+.+.+++.-||.+.++|.+...++-..-.-+.+||+.||-
T Consensus 230 di~kl~~ys~~dp~aysf~G~L~~aNrGl~EFvEm~K~~~~~L~~LLtatQE~~i~~~~~~~~i~~D~vIiaHsNE 305 (644)
T PRK15455 230 DIRKLEHYAQNDPDAYSYSGGLCRANQGLLEFVEMFKAPIKVLHPLLTATQEGNYNGTEGIGAIPFDGIILAHSNE 305 (644)
T ss_pred eHHhhhccCCCCCccccCCchhhhccCCcEeeHHHhcCcHHHHHHhcCCCccCcccCCCCcceeccceeEEecCCH
Confidence 012223334446777779999999999999999999998654442223458899999995
No 456
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.38 E-value=1e-06 Score=92.20 Aligned_cols=108 Identities=19% Similarity=0.264 Sum_probs=69.3
Q ss_pred cceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccccccCCCCCccccccCcchhHHHHhCCCeEEEEeCc
Q 003088 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRRRPFTLLLLDEI 740 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~i~~~~~~vl~lDEi 740 (849)
+++|+|+||||||++|.+|++.+...+..++.++.+++...... .+.. . ...+ ..+.+.+.. ..+|+|||+
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~--~~~~-~---~~~~-~~~l~~l~~--~dlLvIDDi 171 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKD--TFSN-S---ETSE-EQLLNDLSN--VDLLVIDEI 171 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHH--HHhh-c---cccH-HHHHHHhcc--CCEEEEeCC
Confidence 49999999999999999999998666677888877766542111 0100 0 0011 122233333 459999999
Q ss_pred cccCH--HHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCchhhh
Q 003088 741 EKAHP--DIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIA 787 (849)
Q Consensus 741 d~l~~--~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~ 787 (849)
+.... .....|.++++... . .+--+|+|||..++.+.
T Consensus 172 g~~~~s~~~~~~l~~Ii~~Ry-~---------~~~~tiitSNl~~~~l~ 210 (244)
T PRK07952 172 GVQTESRYEKVIINQIVDRRS-S---------SKRPTGMLTNSNMEEMT 210 (244)
T ss_pred CCCCCCHHHHHHHHHHHHHHH-h---------CCCCEEEeCCCCHHHHH
Confidence 87643 35567888887621 1 13458999999766543
No 457
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.36 E-value=1e-06 Score=95.56 Aligned_cols=100 Identities=18% Similarity=0.248 Sum_probs=60.3
Q ss_pred CCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhccc---cccchHHHHHHHHHHHHHhcCCeEE
Q 003088 310 TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGA---KERGELEARVTTLISEIQKSGDVIL 386 (849)
Q Consensus 310 ~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~~~---~~~g~~e~~l~~l~~~~~~~~~~IL 386 (849)
...+++|+||+|||||+|+.++|+.+... +..+..+.+..++..- ...+. +...++.+++. .+|
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~-------g~~v~~~~~~~l~~~lk~~~~~~~----~~~~l~~l~~~--dlL 221 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKK-------GVSSTLLHFPEFIRELKNSISDGS----VKEKIDAVKEA--PVL 221 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHc-------CCCEEEEEHHHHHHHHHHHHhcCc----HHHHHHHhcCC--CEE
Confidence 45789999999999999999999999754 4444445554443211 11122 23344444443 499
Q ss_pred EEcCcchhhhCCCCCCCCCCccHHHH-HHHhhhhc---CCCeEEEEccChH
Q 003088 387 FIDEVHTLIGSGTVGRGNKGTGLDIS-NLLKPSLG---RGELQCIASTTQD 433 (849)
Q Consensus 387 fIDEi~~l~~~~~~~~~~~~~~~~~~-~~L~~~le---~~~i~vI~at~~~ 433 (849)
+|||+..-.. +.... ++|..+++ ..+..+|.|||..
T Consensus 222 iIDDiG~e~~-----------s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~ 261 (306)
T PRK08939 222 MLDDIGAEQM-----------SSWVRDEVLGVILQYRMQEELPTFFTSNFD 261 (306)
T ss_pred EEecCCCccc-----------cHHHHHHHHHHHHHHHHHCCCeEEEECCCC
Confidence 9999987621 11112 23333333 2456777788754
No 458
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.36 E-value=1.3e-06 Score=92.19 Aligned_cols=106 Identities=22% Similarity=0.330 Sum_probs=72.6
Q ss_pred cceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccccccCCCCCccccccCcchhHHHHhCCCeEEEEeCc
Q 003088 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRRRPFTLLLLDEI 740 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~i~~~~~~vl~lDEi 740 (849)
+++|+||||||||.+|-+|++.+...+.+++.+..+++........ . + |. ....+...+...+ +|+|||+
T Consensus 107 nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~--~----~-~~-~~~~l~~~l~~~d--lLIiDDl 176 (254)
T COG1484 107 NLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAF--D----E-GR-LEEKLLRELKKVD--LLIIDDI 176 (254)
T ss_pred cEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHH--h----c-Cc-hHHHHHHHhhcCC--EEEEecc
Confidence 4999999999999999999999976678888888888765422211 0 0 00 0122344344444 9999999
Q ss_pred cc--cCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCchhhh
Q 003088 741 EK--AHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIA 787 (849)
Q Consensus 741 d~--l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~ 787 (849)
.. ++....+.|+++|.... ..... |+|||.....+.
T Consensus 177 G~~~~~~~~~~~~~q~I~~r~----------~~~~~-~~tsN~~~~~~~ 214 (254)
T COG1484 177 GYEPFSQEEADLLFQLISRRY----------ESRSL-IITSNLSFGEWD 214 (254)
T ss_pred cCccCCHHHHHHHHHHHHHHH----------hhccc-eeecCCChHHHH
Confidence 87 45567788888887622 11222 999999876654
No 459
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.35 E-value=1.3e-06 Score=102.36 Aligned_cols=180 Identities=16% Similarity=0.176 Sum_probs=108.2
Q ss_pred HHHHHHhccccccHHHHHHHHHHHHHhhcCCCCC----CCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccc
Q 003088 622 GLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDP----NRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSE 697 (849)
Q Consensus 622 ~l~~~l~~~i~Gq~~~i~~l~~~l~~~~~g~~~~----~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~ 697 (849)
.+.+.+.-.|.|++.+++.|.-++.-+... ..+ -+..-|+||.|.|||||+.+-+.+++...+ .-+....++.
T Consensus 279 ~l~~SiaPsIyG~e~VKkAilLqLfgGv~k-~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr--~vytsgkgss 355 (682)
T COG1241 279 ILIKSIAPSIYGHEDVKKAILLQLFGGVKK-NLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPR--GVYTSGKGSS 355 (682)
T ss_pred HHHHHhcccccCcHHHHHHHHHHhcCCCcc-cCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCc--eEEEcccccc
Confidence 344455677999999988887666432111 111 122358999999999999999999987622 1122222211
Q ss_pred cccccccccccCCCCCcccc--ccCcchhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCC-Cceeec-CCe
Q 003088 698 YMERHTVSKLIGSPPGYVGY--EEGGLLTEAIRRRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSH-GRRVSF-KNA 773 (849)
Q Consensus 698 ~~~~~~~~~l~g~~~g~vg~--~~~~~l~~~i~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~-g~~~~~-~~~ 773 (849)
-.. ......-. +. .|. -+. +++-.+.+||..|||+|+|+..-.++|..+||.+.++... |-...+ ..+
T Consensus 356 ~~G--LTAav~rd-~~-tge~~Lea----GALVlAD~Gv~cIDEfdKm~~~dr~aihEaMEQQtIsIaKAGI~atLnARc 427 (682)
T COG1241 356 AAG--LTAAVVRD-KV-TGEWVLEA----GALVLADGGVCCIDEFDKMNEEDRVAIHEAMEQQTISIAKAGITATLNARC 427 (682)
T ss_pred ccC--ceeEEEEc-cC-CCeEEEeC----CEEEEecCCEEEEEeccCCChHHHHHHHHHHHhcEeeecccceeeecchhh
Confidence 110 00000000 00 110 112 2444567899999999999999999999999999988765 422222 367
Q ss_pred EEEEecCCCchhhhcccCCccc-cccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcC
Q 003088 774 LIVMTSNVGSTTIAKGRHGSIG-FLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFR 836 (849)
Q Consensus 774 ~iI~tsn~~~~~l~~~~~~~~g-f~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~ 836 (849)
-|++++|+. .| |..... +.+.++ |+++|++|||.++...
T Consensus 428 svLAAaNP~-----------~Gryd~~~~-------~~enI~------l~~~lLSRFDLifvl~ 467 (682)
T COG1241 428 SVLAAANPK-----------FGRYDPKKT-------VAENIN------LPAPLLSRFDLIFVLK 467 (682)
T ss_pred hhhhhhCCC-----------CCcCCCCCC-------HHHhcC------CChhHHhhCCeeEEec
Confidence 788888873 23 322111 111111 8899999999765543
No 460
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.35 E-value=5.1e-05 Score=87.25 Aligned_cols=220 Identities=20% Similarity=0.207 Sum_probs=126.1
Q ss_pred hHHhhhhhhHHHHhhcCCCCccccHHHHHHHHHHHhc-----CCCCCCeEeCCCCChHHHHHHHHHHHhh----hCCCCc
Q 003088 272 ALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCR-----RTKNNPILLGESGVGKTAIAEGLAIRIV----QAEVPV 342 (849)
Q Consensus 272 ~l~~~~~~l~~~~~~~~l~~iiG~~~~i~~l~~~l~~-----~~~~niLL~GppGtGKT~la~~la~~l~----~~~~p~ 342 (849)
.|+.+...+.-...| +-+-+|+.+...+...+.. ....-+.+.|-||||||..+..+.+.+. +++.|.
T Consensus 381 ~l~~ara~Lhls~vp---~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~ 457 (767)
T KOG1514|consen 381 ELSKARARLHLSAVP---ESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPK 457 (767)
T ss_pred HHHHHHHHhHHhhcc---ccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCC
Confidence 344444444444444 3467899888887776633 2233678999999999999999999875 345554
Q ss_pred cccCCeEEEeehhhhh-------------ccccccc-hHHHHHHHHHHHH-HhcCCeEEEEcCcchhhhCCCCCCCCCCc
Q 003088 343 FLLSKRIMSLDMGLLM-------------AGAKERG-ELEARVTTLISEI-QKSGDVILFIDEVHTLIGSGTVGRGNKGT 407 (849)
Q Consensus 343 ~~~~~~~~~l~~~~~~-------------~~~~~~g-~~e~~l~~l~~~~-~~~~~~ILfIDEi~~l~~~~~~~~~~~~~ 407 (849)
+. .+++|.-.+. .|.+..+ ..-+.+..-|.-- ....++||+|||+|.|+..
T Consensus 458 f~----yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr---------- 523 (767)
T KOG1514|consen 458 FD----YVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTR---------- 523 (767)
T ss_pred cc----EEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcc----------
Confidence 32 2333311111 1111111 0111111111100 1134689999999999742
Q ss_pred cHH-HHHHHh-hhhcCCCeEEEEccChHHHHHHhhccHHHHhcc--ccEEecCCCHHHHHHHHHHHHHHHHhhcCCccCH
Q 003088 408 GLD-ISNLLK-PSLGRGELQCIASTTQDEHRTQFEKDKALARRF--QPVLISEPSQEDAVRILLGLREKYEAHHNCKFTL 483 (849)
Q Consensus 408 ~~~-~~~~L~-~~le~~~i~vI~at~~~~~~~~~~~d~al~~Rf--~~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~ 483 (849)
..+ ++|++. +.+.+.+++||+..|..+.-. ..+....-+|+ .+|.|.+++.+|..+|+...+... ..|..
T Consensus 524 ~QdVlYn~fdWpt~~~sKLvvi~IaNTmdlPE-r~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~-----~~f~~ 597 (767)
T KOG1514|consen 524 SQDVLYNIFDWPTLKNSKLVVIAIANTMDLPE-RLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGL-----DAFEN 597 (767)
T ss_pred cHHHHHHHhcCCcCCCCceEEEEecccccCHH-HHhccchhhhccceeeecCCCCHHHHHHHHHHhhcch-----hhcch
Confidence 234 345553 455677888888777543211 12233444566 479999999999999998766522 35677
Q ss_pred HHHHHHHHhhhcccccCcchhhHHHHHHHHhhHH
Q 003088 484 EAINAAVHLSARYISDRYLPDKAIDLVDEAGSRA 517 (849)
Q Consensus 484 ~~l~~~a~ls~~~~~~r~~p~~ai~ll~~a~~~~ 517 (849)
++++.+++..+..-. -..+|.++++.|...+
T Consensus 598 ~aielvarkVAavSG---DaRraldic~RA~Eia 628 (767)
T KOG1514|consen 598 KAIELVARKVAAVSG---DARRALDICRRAAEIA 628 (767)
T ss_pred hHHHHHHHHHHhccc---cHHHHHHHHHHHHHHh
Confidence 777766654333221 1236677777765544
No 461
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.35 E-value=9.5e-07 Score=94.30 Aligned_cols=148 Identities=18% Similarity=0.306 Sum_probs=84.5
Q ss_pred cceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccccccCCCCCccccccCcchhHHHHhCCCeEEEEeCc
Q 003088 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRRRPFTLLLLDEI 740 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~i~~~~~~vl~lDEi 740 (849)
++||+||+|||||.+++.+-+.+.....-...++++.......+...+... .....++ .... ......|+|||++
T Consensus 35 pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tts~~~q~~ie~~---l~k~~~~-~~gP-~~~k~lv~fiDDl 109 (272)
T PF12775_consen 35 PVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTTSNQLQKIIESK---LEKRRGR-VYGP-PGGKKLVLFIDDL 109 (272)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHHHHHHHHCCCTT---ECECTTE-EEEE-ESSSEEEEEEETT
T ss_pred cEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCCHHHHHHHHhhc---EEcCCCC-CCCC-CCCcEEEEEeccc
Confidence 399999999999999987765543322224556666555443333332211 1000000 0000 1123469999999
Q ss_pred cccCHH------HHHHHHHHhhcCeeecCCC-ceeecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHH
Q 003088 741 EKAHPD------IFNILLQVFEDGHLTDSHG-RRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLV 813 (849)
Q Consensus 741 d~l~~~------~~~~Ll~~le~g~~~~~~g-~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~ 813 (849)
..-.++ ..+.|.|.|+.|-+.|... .-....++.+|+++|++.. +
T Consensus 110 N~p~~d~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~G------r---------------------- 161 (272)
T PF12775_consen 110 NMPQPDKYGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGG------R---------------------- 161 (272)
T ss_dssp T-S---TTS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT-----------------------------
T ss_pred CCCCCCCCCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCC------C----------------------
Confidence 876543 6789999999988888643 2345569999999987421 0
Q ss_pred HHHHHhhCChHHhhccccEEEcCCCCHHHHcccc
Q 003088 814 VEELKAYFRPELLNRIDEVVVFRSLEKAQVCQLP 847 (849)
Q Consensus 814 ~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~I~ 847 (849)
..+.+-|++.| .++.+++++.+.+..|.
T Consensus 162 -----~~is~R~~r~f-~i~~~~~p~~~sl~~If 189 (272)
T PF12775_consen 162 -----NPISPRFLRHF-NILNIPYPSDESLNTIF 189 (272)
T ss_dssp ------SHHHHHHTTE-EEEE----TCCHHHHHH
T ss_pred -----CCCChHHhhhe-EEEEecCCChHHHHHHH
Confidence 01456677777 56777777777666653
No 462
>PRK09087 hypothetical protein; Validated
Probab=98.34 E-value=1.9e-06 Score=89.52 Aligned_cols=116 Identities=21% Similarity=0.236 Sum_probs=73.2
Q ss_pred cceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccccccCCCCCccccccCcchhHHHHhCCCeEEEEeCc
Q 003088 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRRRPFTLLLLDEI 740 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~i~~~~~~vl~lDEi 740 (849)
.++|+||+|+|||++++++++.. + ...++...+.. .+...+ ...+|+|||+
T Consensus 46 ~l~l~G~~GsGKThLl~~~~~~~---~--~~~i~~~~~~~---------------------~~~~~~---~~~~l~iDDi 96 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWREKS---D--ALLIHPNEIGS---------------------DAANAA---AEGPVLIEDI 96 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHhc---C--CEEecHHHcch---------------------HHHHhh---hcCeEEEECC
Confidence 39999999999999999988763 1 22333221111 011111 1258999999
Q ss_pred cccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhh
Q 003088 741 EKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAY 820 (849)
Q Consensus 741 d~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~ 820 (849)
+.+.. .+..|+..+..-. -....+|+|++..+..+. .
T Consensus 97 ~~~~~-~~~~lf~l~n~~~----------~~g~~ilits~~~p~~~~--------------------------------~ 133 (226)
T PRK09087 97 DAGGF-DETGLFHLINSVR----------QAGTSLLMTSRLWPSSWN--------------------------------V 133 (226)
T ss_pred CCCCC-CHHHHHHHHHHHH----------hCCCeEEEECCCChHHhc--------------------------------c
Confidence 98742 3455666664311 012357777776554332 0
Q ss_pred CChHHhhccc--cEEEcCCCCHHHHccccC
Q 003088 821 FRPELLNRID--EVVVFRSLEKAQVCQLPL 848 (849)
Q Consensus 821 ~~pell~R~d--~~i~f~pl~~~~~~~I~~ 848 (849)
+.|+|.+||. .++.+.|++.+++..|++
T Consensus 134 ~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~ 163 (226)
T PRK09087 134 KLPDLKSRLKAATVVEIGEPDDALLSQVIF 163 (226)
T ss_pred ccccHHHHHhCCceeecCCCCHHHHHHHHH
Confidence 3578999995 789999999998887763
No 463
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=98.33 E-value=2.7e-06 Score=95.95 Aligned_cols=187 Identities=15% Similarity=0.158 Sum_probs=110.1
Q ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHh---hcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeec
Q 003088 619 LLVGLEEQLKKRVIGQDEAVAAISRAVKRS---RVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDM 695 (849)
Q Consensus 619 ~~~~l~~~l~~~i~Gq~~~i~~l~~~l~~~---~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~ 695 (849)
.+..+-..|.-.|.|++.++.-|.-.+.-+ ..+...|-+...|++++|.|||||+-+-++.+..+.+ -++..+
T Consensus 335 ly~~lv~Sl~PsIyGhe~VK~GilL~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR----~vYtsG 410 (764)
T KOG0480|consen 335 LYKNLVNSLFPSIYGHELVKAGILLSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPR----SVYTSG 410 (764)
T ss_pred HHHHHHHhhCccccchHHHHhhHHHHHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCc----ceEecC
Confidence 345666777888999999998887776421 1122233444568999999999999999999977522 122222
Q ss_pred cccccccccccccCCCCCccccccCcc---hhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCC-CceeecC
Q 003088 696 SEYMERHTVSKLIGSPPGYVGYEEGGL---LTEAIRRRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSH-GRRVSFK 771 (849)
Q Consensus 696 ~~~~~~~~~~~l~g~~~g~vg~~~~~~---l~~~i~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~-g~~~~~~ 771 (849)
..-.......-+ +..++.+. =.+|+--+.+||-.|||+|||+..-|.+|+++||...+.... |-....+
T Consensus 411 kaSSaAGLTaaV-------vkD~esgdf~iEAGALmLADnGICCIDEFDKMd~~dqvAihEAMEQQtISIaKAGv~aTLn 483 (764)
T KOG0480|consen 411 KASSAAGLTAAV-------VKDEESGDFTIEAGALMLADNGICCIDEFDKMDVKDQVAIHEAMEQQTISIAKAGVVATLN 483 (764)
T ss_pred cccccccceEEE-------EecCCCCceeeecCcEEEccCceEEechhcccChHhHHHHHHHHHhheehheecceEEeec
Confidence 111110000001 11111111 113455567899999999999999999999999998777653 3222222
Q ss_pred -CeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEE-EcCCCC
Q 003088 772 -NALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVV-VFRSLE 839 (849)
Q Consensus 772 -~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i-~f~pl~ 839 (849)
++-||+++|+-... |... .-+.+-++ +.+++++|||.++ ....++
T Consensus 484 ARtSIlAAANPv~Gh----------YdR~-------ktl~eNi~------msApimSRFDL~FiLlD~~n 530 (764)
T KOG0480|consen 484 ARTSILAAANPVGGH----------YDRK-------KTLRENIN------MSAPIMSRFDLFFILLDDCN 530 (764)
T ss_pred chhhhhhhcCCcCCc----------cccc-------cchhhhcC------CCchhhhhhcEEEEEecCCc
Confidence 44555555542111 1110 11111111 7899999999654 444444
No 464
>PHA00729 NTP-binding motif containing protein
Probab=98.31 E-value=3.4e-06 Score=86.35 Aligned_cols=125 Identities=14% Similarity=0.144 Sum_probs=73.0
Q ss_pred HHHHHhcCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCC------ccccCCeEEEeehhhhhccccccchHHHHHHHHH
Q 003088 302 IIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVP------VFLLSKRIMSLDMGLLMAGAKERGELEARVTTLI 375 (849)
Q Consensus 302 l~~~l~~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p------~~~~~~~~~~l~~~~~~~~~~~~g~~e~~l~~l~ 375 (849)
+++.+......|++|+|+||||||++|.+|++++...-.+ ....+...+.+++.. +...++..+
T Consensus 8 ~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~~~~~~fid~~~----------Ll~~L~~a~ 77 (226)
T PHA00729 8 IVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQYVQNSYFFELPD----------ALEKIQDAI 77 (226)
T ss_pred HHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhcCCcEEEEEHHH----------HHHHHHHHH
Confidence 3444444455689999999999999999999987411000 000112222333222 222233322
Q ss_pred HHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCCCeEEEEccChHHHHHHhhccHHHHhccccEEec
Q 003088 376 SEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLIS 455 (849)
Q Consensus 376 ~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~~i~vI~at~~~~~~~~~~~d~al~~Rf~~i~~~ 455 (849)
+.. ....+|+|||+..-.....- .. + . +..++.+.+++++|++.+.|.
T Consensus 78 ~~~--~~~dlLIIDd~G~~~~~~~w-------h~----------~----~---------~~~yf~L~~aLrSR~~l~il~ 125 (226)
T PHA00729 78 DND--YRIPLIIFDDAGIWLSKYVW-------YE----------D----Y---------MKTFYKIYALIRTRVSAVIFT 125 (226)
T ss_pred hcC--CCCCEEEEeCCchhhcccch-------hh----------h----c---------cchHHHHHHHHHhhCcEEEEe
Confidence 211 11248999997655311000 00 0 0 112457788999999999999
Q ss_pred CCCHHHHHHHHHH
Q 003088 456 EPSQEDAVRILLG 468 (849)
Q Consensus 456 ~ps~~e~~~iL~~ 468 (849)
.++.++..+.|+.
T Consensus 126 ~ls~edL~~~Lr~ 138 (226)
T PHA00729 126 TPSPEDLAFYLRE 138 (226)
T ss_pred cCCHHHHHHHHHh
Confidence 9999999988876
No 465
>PF05729 NACHT: NACHT domain
Probab=98.31 E-value=9.5e-06 Score=79.69 Aligned_cols=144 Identities=19% Similarity=0.221 Sum_probs=81.9
Q ss_pred CeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhccccccchHHHHH-----------HH-HHHHHHhc
Q 003088 314 PILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARV-----------TT-LISEIQKS 381 (849)
Q Consensus 314 iLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~~~~~~g~~e~~l-----------~~-l~~~~~~~ 381 (849)
++|+|+||+|||++++.++..+.....+... ..-++.+.+......... ..+...+ .. +...+...
T Consensus 3 l~I~G~~G~GKStll~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQLAEEEPPPSK-FPYPFFFSLRDISDSNNS-RSLADLLFDQLPESIAPIEELLQELLEKN 80 (166)
T ss_pred EEEECCCCCChHHHHHHHHHHHHhcCccccc-ceEEEEEeehhhhhcccc-chHHHHHHHhhccchhhhHHHHHHHHHcC
Confidence 6899999999999999999998765433211 011222222222211100 0111111 11 11122345
Q ss_pred CCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcC---CCeEEEEccChHHHHHHhhccHHHHhcc---ccEEec
Q 003088 382 GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR---GELQCIASTTQDEHRTQFEKDKALARRF---QPVLIS 455 (849)
Q Consensus 382 ~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~---~~i~vI~at~~~~~~~~~~~d~al~~Rf---~~i~~~ 455 (849)
+..+|+||.+|.+...... .......+.|..++.. .++.+|.++++..+.. +.+.+ ..+.++
T Consensus 81 ~~~llilDglDE~~~~~~~-----~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~-------~~~~~~~~~~~~l~ 148 (166)
T PF05729_consen 81 KRVLLILDGLDELEEQDQS-----QERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPD-------LRRRLKQAQILELE 148 (166)
T ss_pred CceEEEEechHhcccchhh-----hHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHH-------HHHhcCCCcEEEEC
Confidence 6789999999999643211 0122344455555543 4577777777665221 44433 458999
Q ss_pred CCCHHHHHHHHHHHHH
Q 003088 456 EPSQEDAVRILLGLRE 471 (849)
Q Consensus 456 ~ps~~e~~~iL~~~~~ 471 (849)
+.+.++..++++...+
T Consensus 149 ~~~~~~~~~~~~~~f~ 164 (166)
T PF05729_consen 149 PFSEEDIKQYLRKYFS 164 (166)
T ss_pred CCCHHHHHHHHHHHhh
Confidence 9999999999876553
No 466
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.29 E-value=2.7e-06 Score=91.17 Aligned_cols=147 Identities=18% Similarity=0.187 Sum_probs=78.8
Q ss_pred cceeecCCCCchHHHHHHHHHHhcCCCCceeEeecccccccc---ccccccCCCCCccccccC---cchhHH----HHhC
Q 003088 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERH---TVSKLIGSPPGYVGYEEG---GLLTEA----IRRR 730 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~---~~~~l~g~~~g~vg~~~~---~~l~~~----i~~~ 730 (849)
.++++||+|+|||++++.++..+.........+......... .+...+|.+.. +.... ..+... ....
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~--~~~~~~~~~~l~~~l~~~~~~~ 122 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETE--GRDKAALLRELEDFLIEQFAAG 122 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCC--CCCHHHHHHHHHHHHHHHHhCC
Confidence 488999999999999999998863221111111111111111 11122343321 11110 112222 2234
Q ss_pred CCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHH
Q 003088 731 PFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMK 810 (849)
Q Consensus 731 ~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~ 810 (849)
...+|+|||++.+++..++.|..+.+- . .+ ....+.||++.........
T Consensus 123 ~~~vliiDe~~~l~~~~~~~l~~l~~~-~-~~------~~~~~~vvl~g~~~~~~~l----------------------- 171 (269)
T TIGR03015 123 KRALLVVDEAQNLTPELLEELRMLSNF-Q-TD------NAKLLQIFLVGQPEFRETL----------------------- 171 (269)
T ss_pred CCeEEEEECcccCCHHHHHHHHHHhCc-c-cC------CCCeEEEEEcCCHHHHHHH-----------------------
Confidence 557999999999999888877655432 1 01 0123455666654321110
Q ss_pred HHHHHHHHhhCChHHhhccccEEEcCCCCHHHHcccc
Q 003088 811 TLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQLP 847 (849)
Q Consensus 811 ~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~I~ 847 (849)
..--...+.+|+...+.++|++.+++.+++
T Consensus 172 -------~~~~~~~l~~r~~~~~~l~~l~~~e~~~~l 201 (269)
T TIGR03015 172 -------QSPQLQQLRQRIIASCHLGPLDREETREYI 201 (269)
T ss_pred -------cCchhHHHHhheeeeeeCCCCCHHHHHHHH
Confidence 000113466787778889999988877654
No 467
>PF13173 AAA_14: AAA domain
Probab=98.28 E-value=4.2e-06 Score=79.05 Aligned_cols=120 Identities=23% Similarity=0.326 Sum_probs=79.1
Q ss_pred ceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccccccCCCCCccccccCcchhHHHHh---CCCeEEEEe
Q 003088 662 MLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRR---RPFTLLLLD 738 (849)
Q Consensus 662 lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~i~~---~~~~vl~lD 738 (849)
+++.||.|||||++++.+++.+. ....++.+++.+........ .. +.+.+.+ ....+||||
T Consensus 5 ~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~~~~~~~~~~~~--------------~~-~~~~~~~~~~~~~~~i~iD 68 (128)
T PF13173_consen 5 IILTGPRGVGKTTLLKQLAKDLL-PPENILYINFDDPRDRRLAD--------------PD-LLEYFLELIKPGKKYIFID 68 (128)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc-ccccceeeccCCHHHHHHhh--------------hh-hHHHHHHhhccCCcEEEEe
Confidence 89999999999999999998875 34568888887654421100 00 1222222 145799999
Q ss_pred CccccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHH
Q 003088 739 EIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELK 818 (849)
Q Consensus 739 Eid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~ 818 (849)
||+.++ +....+-.+.+.+ .+..||+|++......
T Consensus 69 Eiq~~~-~~~~~lk~l~d~~------------~~~~ii~tgS~~~~l~-------------------------------- 103 (128)
T PF13173_consen 69 EIQYLP-DWEDALKFLVDNG------------PNIKIILTGSSSSLLS-------------------------------- 103 (128)
T ss_pred hhhhhc-cHHHHHHHHHHhc------------cCceEEEEccchHHHh--------------------------------
Confidence 999996 6777777777763 2556777666422110
Q ss_pred hhCChHHhhccccEEEcCCCCHHHH
Q 003088 819 AYFRPELLNRIDEVVVFRSLEKAQV 843 (849)
Q Consensus 819 ~~~~pell~R~d~~i~f~pl~~~~~ 843 (849)
+-....|.+|. ..+...|++-+|+
T Consensus 104 ~~~~~~l~gr~-~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 104 KDIAESLAGRV-IEIELYPLSFREF 127 (128)
T ss_pred hcccccCCCeE-EEEEECCCCHHHh
Confidence 11345677887 5788999987764
No 468
>PRK06921 hypothetical protein; Provisional
Probab=98.27 E-value=3.7e-06 Score=89.55 Aligned_cols=124 Identities=18% Similarity=0.250 Sum_probs=64.5
Q ss_pred CCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEc
Q 003088 310 TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFID 389 (849)
Q Consensus 310 ~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~~~~~~g~~e~~l~~l~~~~~~~~~~ILfID 389 (849)
..++++|+|++|+|||+++.+||+.+.... +..++.+....+...- ...+ ......++.+.+ ..+|+||
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~------g~~v~y~~~~~l~~~l--~~~~-~~~~~~~~~~~~--~dlLiID 184 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKK------GVPVLYFPFVEGFGDL--KDDF-DLLEAKLNRMKK--VEVLFID 184 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhc------CceEEEEEHHHHHHHH--HHHH-HHHHHHHHHhcC--CCEEEEe
Confidence 467899999999999999999999986421 3445555544433211 0111 112223333333 3599999
Q ss_pred Ccch-hhhCCCCCCCCCCccHHHHHHHhhhhcCCCeEEEEccChHHHHHHhhccHHHHhcc
Q 003088 390 EVHT-LIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRF 449 (849)
Q Consensus 390 Ei~~-l~~~~~~~~~~~~~~~~~~~~L~~~le~~~i~vI~at~~~~~~~~~~~d~al~~Rf 449 (849)
|++. +.+.... +......+.+++.....++.- +|.|||... ..+...++.+.+|+
T Consensus 185 Dl~~~~~g~e~~---t~~~~~~lf~iin~R~~~~k~-tIitsn~~~-~el~~~~~~l~sRi 240 (266)
T PRK06921 185 DLFKPVNGKPRA---TEWQIEQMYSVLNYRYLNHKP-ILISSELTI-DELLDIDEALGSRI 240 (266)
T ss_pred ccccccCCCccC---CHHHHHHHHHHHHHHHHCCCC-EEEECCCCH-HHHhhhhhHHHHHH
Confidence 9955 2111100 000112344555544444443 455555432 12223356666654
No 469
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.25 E-value=8.3e-06 Score=84.99 Aligned_cols=122 Identities=12% Similarity=0.099 Sum_probs=81.7
Q ss_pred CCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccC------------CeEEEeehhhhhccccccchHHHHHHHHHHHHH
Q 003088 312 NNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLS------------KRIMSLDMGLLMAGAKERGELEARVTTLISEIQ 379 (849)
Q Consensus 312 ~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~------------~~~~~l~~~~~~~~~~~~g~~e~~l~~l~~~~~ 379 (849)
...||+||.|+||..+|.++|+.+.+.+....... -.++.+.-. .. .-..+.++++.+.+.
T Consensus 8 HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~-----~~--~I~id~ir~l~~~l~ 80 (261)
T PRK05818 8 HPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQ-----KN--PIKKEDALSIINKLN 80 (261)
T ss_pred cceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCC-----cc--cCCHHHHHHHHHHHc
Confidence 35699999999999999999999876432111111 111111000 00 111233444444332
Q ss_pred -----hcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCC--CeEEEEccChHHHHHHhhccHHHHhccccE
Q 003088 380 -----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG--ELQCIASTTQDEHRTQFEKDKALARRFQPV 452 (849)
Q Consensus 380 -----~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~--~i~vI~at~~~~~~~~~~~d~al~~Rf~~i 452 (849)
.++..|++||++|.| ...+.|.|+..||.+ +..+|..|+..+ .+-+.++|||+.+
T Consensus 81 ~~s~e~~~~KV~II~~ae~m-------------~~~AaNaLLK~LEEPp~~t~fiLit~~~~-----~lLpTI~SRCq~~ 142 (261)
T PRK05818 81 RPSVESNGKKIYIIYGIEKL-------------NKQSANSLLKLIEEPPKNTYGIFTTRNEN-----NILNTILSRCVQY 142 (261)
T ss_pred cCchhcCCCEEEEeccHhhh-------------CHHHHHHHHHhhcCCCCCeEEEEEECChH-----hCchHhhhheeee
Confidence 234679999999999 567899999999964 567777777666 7889999999999
Q ss_pred EecCCC
Q 003088 453 LISEPS 458 (849)
Q Consensus 453 ~~~~ps 458 (849)
.|+.+.
T Consensus 143 ~~~~~~ 148 (261)
T PRK05818 143 VVLSKE 148 (261)
T ss_pred ecCChh
Confidence 998873
No 470
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.24 E-value=1.6e-06 Score=87.15 Aligned_cols=48 Identities=38% Similarity=0.593 Sum_probs=33.9
Q ss_pred CccccHHHHHHHHHHHh---cCCCCCCeEeCCCCChHHHHHHHHHHHhhhC
Q 003088 291 PVIGRETEIQRIIQILC---RRTKNNPILLGESGVGKTAIAEGLAIRIVQA 338 (849)
Q Consensus 291 ~iiG~~~~i~~l~~~l~---~~~~~niLL~GppGtGKT~la~~la~~l~~~ 338 (849)
+++||+++++++...+. ....++++|+|++|+|||++++.+...+...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 37899999999999883 2345788999999999999999999888654
No 471
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.24 E-value=1.2e-06 Score=82.67 Aligned_cols=109 Identities=23% Similarity=0.380 Sum_probs=69.3
Q ss_pred cceeecCCCCchHHHHHHHHHHhcCC-----CCceeEeecccccccccc----ccccCCCCCc--cccccCcchhHHHHh
Q 003088 661 AMLFCGPTGVGKTELAKSLAACYFGS-----ESSMLRLDMSEYMERHTV----SKLIGSPPGY--VGYEEGGLLTEAIRR 729 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~l~~~-----~~~~i~i~~~~~~~~~~~----~~l~g~~~g~--vg~~~~~~l~~~i~~ 729 (849)
.++++||+|+|||++++.+++.+... ..+++.++++........ ...++.+... ....-...+...+.+
T Consensus 6 ~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~~ 85 (131)
T PF13401_consen 6 ILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALDR 85 (131)
T ss_dssp -EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHHH
T ss_pred ccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHHh
Confidence 48999999999999999999876321 456788888766522111 1122322111 000001234555566
Q ss_pred CCCeEEEEeCcccc-CHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCC
Q 003088 730 RPFTLLLLDEIEKA-HPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVG 782 (849)
Q Consensus 730 ~~~~vl~lDEid~l-~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~ 782 (849)
....+|+|||+|.+ +..+++.|...+++ .++.||+++++.
T Consensus 86 ~~~~~lviDe~~~l~~~~~l~~l~~l~~~-------------~~~~vvl~G~~~ 126 (131)
T PF13401_consen 86 RRVVLLVIDEADHLFSDEFLEFLRSLLNE-------------SNIKVVLVGTPE 126 (131)
T ss_dssp CTEEEEEEETTHHHHTHHHHHHHHHHTCS-------------CBEEEEEEESST
T ss_pred cCCeEEEEeChHhcCCHHHHHHHHHHHhC-------------CCCeEEEEEChh
Confidence 66579999999999 99999999888874 355677776654
No 472
>PRK09183 transposase/IS protein; Provisional
Probab=98.23 E-value=1.8e-06 Score=91.64 Aligned_cols=104 Identities=22% Similarity=0.307 Sum_probs=66.2
Q ss_pred cceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccccccCCCCCccccccCcchhHHHHh--CCCeEEEEe
Q 003088 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRR--RPFTLLLLD 738 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~i~~--~~~~vl~lD 738 (849)
+++|+||||||||++|.+|+......+..+..+++.++....... .. .+.+...+.. ....+++||
T Consensus 104 ~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a-----------~~-~~~~~~~~~~~~~~~dlLiiD 171 (259)
T PRK09183 104 NIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTA-----------QR-QGRYKTTLQRGVMAPRLLIID 171 (259)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHH-----------HH-CCcHHHHHHHHhcCCCEEEEc
Confidence 499999999999999999987764445556666665544321100 00 0112122211 234599999
Q ss_pred Ccccc--CHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCchhhh
Q 003088 739 EIEKA--HPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIA 787 (849)
Q Consensus 739 Eid~l--~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~ 787 (849)
|++.. +...++.|+++++... .+.-+|+|||.++..+.
T Consensus 172 dlg~~~~~~~~~~~lf~li~~r~-----------~~~s~iiTsn~~~~~w~ 211 (259)
T PRK09183 172 EIGYLPFSQEEANLFFQVIAKRY-----------EKGSMILTSNLPFGQWD 211 (259)
T ss_pred ccccCCCChHHHHHHHHHHHHHH-----------hcCcEEEecCCCHHHHH
Confidence 99874 5567778999997621 12237899999877654
No 473
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.22 E-value=2.9e-06 Score=97.89 Aligned_cols=180 Identities=19% Similarity=0.301 Sum_probs=104.6
Q ss_pred CccccHHHHHHHHHHH--hcCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhc--------c
Q 003088 291 PVIGRETEIQRIIQIL--CRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA--------G 360 (849)
Q Consensus 291 ~iiG~~~~i~~l~~~l--~~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~--------~ 360 (849)
.++|....+..+...+ ......+++++|++|+||+++|+++....... +.+++.+++..+.. |
T Consensus 140 ~lig~s~~~~~~~~~i~~~~~~~~~vli~ge~g~gk~~~a~~ih~~s~~~-------~~~~i~~~c~~~~~~~~~~~lfg 212 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSARS-------EKPLVTLNCAALNESLLESELFG 212 (441)
T ss_pred ceEecCHHHHHHHHHHhhccCCCCeEEEEecCCCCHHHHHHHHHHcCCCC-------CCCeeeeeCCCCCHHHHHHHhcC
Confidence 3566666555554432 22455789999999999999999998765433 45566666654320 0
Q ss_pred ccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCCC-------------eEEE
Q 003088 361 AKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGE-------------LQCI 427 (849)
Q Consensus 361 ~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~~-------------i~vI 427 (849)
. ..|.+..........+....+++|||||++.| ..+.+..|..+++.+. +++|
T Consensus 213 ~-~~~~~~~~~~~~~g~~~~a~~gtl~ldei~~l-------------~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii 278 (441)
T PRK10365 213 H-EKGAFTGADKRREGRFVEADGGTLFLDEIGDI-------------SPMMQVRLLRAIQEREVQRVGSNQTISVDVRLI 278 (441)
T ss_pred C-CCCCcCCCCcCCCCceeECCCCEEEEeccccC-------------CHHHHHHHHHHHccCcEEeCCCCceeeeceEEE
Confidence 0 00000000000000112344679999999999 4566778877777543 5689
Q ss_pred EccChHHHHHH--hhccHHHHhccccEEecCCCHHHH----HHHHHHHHHHHHhhcC---CccCHHHHHHHHH
Q 003088 428 ASTTQDEHRTQ--FEKDKALARRFQPVLISEPSQEDA----VRILLGLREKYEAHHN---CKFTLEAINAAVH 491 (849)
Q Consensus 428 ~at~~~~~~~~--~~~d~al~~Rf~~i~~~~ps~~e~----~~iL~~~~~~~~~~~~---~~i~~~~l~~~a~ 491 (849)
++|+.+..... -...+.|..||..+.+..|+..+| ..++..+..++....+ ..++++++..+..
T Consensus 279 ~~t~~~~~~~~~~~~~~~~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~ 351 (441)
T PRK10365 279 AATHRDLAAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIH 351 (441)
T ss_pred EeCCCCHHHHHHcCCchHHHHHHhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHh
Confidence 88877642211 124456666777666666655544 4455555555443322 3588888876654
No 474
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=98.21 E-value=9.1e-06 Score=92.68 Aligned_cols=50 Identities=28% Similarity=0.410 Sum_probs=42.4
Q ss_pred CCCCccccHHHHHHHHHHH------hcCCCCCCeEeCCCCChHHHHHHHHHHHhhh
Q 003088 288 LIDPVIGRETEIQRIIQIL------CRRTKNNPILLGESGVGKTAIAEGLAIRIVQ 337 (849)
Q Consensus 288 ~l~~iiG~~~~i~~l~~~l------~~~~~~niLL~GppGtGKT~la~~la~~l~~ 337 (849)
.|++++|.++.+.++++.+ ...++.-++|+||||+|||+||+.|++.+.+
T Consensus 74 fF~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 74 AFEEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred chhcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence 5889999999999999987 2234456799999999999999999998854
No 475
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.19 E-value=9.2e-06 Score=95.24 Aligned_cols=177 Identities=18% Similarity=0.123 Sum_probs=110.8
Q ss_pred CCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeeh----hhhhccccccchHHHHHHHHH-----HHHHh
Q 003088 310 TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM----GLLMAGAKERGELEARVTTLI-----SEIQK 380 (849)
Q Consensus 310 ~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~----~~~~~~~~~~g~~e~~l~~l~-----~~~~~ 380 (849)
....++|.|+.|+||++++++++..+.. . .++..+-. ..++.| ++++..++.=- ..+..
T Consensus 24 ~~gGv~i~g~~G~~ks~~~r~l~~llp~-~-------~p~r~~p~~~t~~~L~Gg----~Dl~~~l~~g~~~~~pGlla~ 91 (584)
T PRK13406 24 GLGGVVLRARAGPVRDRWLAALRALLPA-G-------TPLRRLPPGIADDRLLGG----LDLAATLRAGRPVAQRGLLAE 91 (584)
T ss_pred ccceEEEEcCCCcHHHHHHHHHHHhcCC-C-------CCcccCCCCCcHHHccCC----chHHhHhhcCCcCCCCCceee
Confidence 5578999999999999999999988743 1 22222221 112211 23333332100 01223
Q ss_pred cCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCCC---------------eEEEEccChHHHHHHhhccHHH
Q 003088 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGE---------------LQCIASTTQDEHRTQFEKDKAL 445 (849)
Q Consensus 381 ~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~~---------------i~vI~at~~~~~~~~~~~d~al 445 (849)
..++||||||+..+ ...+++.|+..++.|. +.+|++.+..+|. ..+.+++
T Consensus 92 Ah~GvL~lDe~n~~-------------~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~--~~L~~~l 156 (584)
T PRK13406 92 ADGGVLVLAMAERL-------------EPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEED--ERAPAAL 156 (584)
T ss_pred ccCCEEEecCcccC-------------CHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcc--cCCCHHh
Confidence 44679999999999 5678899999998764 4668875555554 4688999
Q ss_pred Hhccc-cEEecCCCHHHHH-------HHHHHHHHHHHhhcCCccCHHHHHHHHHhhhcccccCcchhhHHHHHHHHhhHH
Q 003088 446 ARRFQ-PVLISEPSQEDAV-------RILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRA 517 (849)
Q Consensus 446 ~~Rf~-~i~~~~ps~~e~~-------~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~~~r~~p~~ai~ll~~a~~~~ 517 (849)
..||. .|.++.++..+.. .|.. ..+++ .++.++++.+.+++.++..+--. -+...+.++.-|-..+
T Consensus 157 LDRf~l~v~v~~~~~~~~~~~~~~~~~I~~-AR~rl---~~v~v~~~~l~~i~~~~~~~gv~--S~Ra~i~llraARa~A 230 (584)
T PRK13406 157 ADRLAFHLDLDGLALRDAREIPIDADDIAA-ARARL---PAVGPPPEAIAALCAAAAALGIA--SLRAPLLALRAARAAA 230 (584)
T ss_pred HhheEEEEEcCCCChHHhcccCCCHHHHHH-HHHHH---ccCCCCHHHHHHHHHHHHHhCCC--CcCHHHHHHHHHHHHH
Confidence 99998 6999988766432 2222 22233 47889999999888877764210 1233344555554444
Q ss_pred HH
Q 003088 518 HI 519 (849)
Q Consensus 518 ~~ 519 (849)
.+
T Consensus 231 aL 232 (584)
T PRK13406 231 AL 232 (584)
T ss_pred HH
Confidence 33
No 476
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.19 E-value=4.9e-06 Score=90.33 Aligned_cols=107 Identities=21% Similarity=0.258 Sum_probs=69.7
Q ss_pred cceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccccccCCCCCccccccCcchhHHHHhCCCeEEEEeCc
Q 003088 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRRRPFTLLLLDEI 740 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~i~~~~~~vl~lDEi 740 (849)
+++|+||+|||||++|.++++.+...+.++..+.++++...... .++. ..-..+.+.+.+.+ +|+|||+
T Consensus 158 gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~--~~~~-------~~~~~~l~~l~~~d--lLiIDDi 226 (306)
T PRK08939 158 GLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKN--SISD-------GSVKEKIDAVKEAP--VLMLDDI 226 (306)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHH--HHhc-------CcHHHHHHHhcCCC--EEEEecC
Confidence 49999999999999999999998766777777777776543211 1111 00012233344444 9999999
Q ss_pred cc--cCHHHHHHHHHHh-hcCeeecCCCceeecCCeEEEEecCCCchhhhc
Q 003088 741 EK--AHPDIFNILLQVF-EDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAK 788 (849)
Q Consensus 741 d~--l~~~~~~~Ll~~l-e~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~~ 788 (849)
.. +++...+.++..| +.. + ..+.-.|+|||...+.+.+
T Consensus 227 G~e~~s~~~~~~ll~~Il~~R-~---------~~~~~ti~TSNl~~~el~~ 267 (306)
T PRK08939 227 GAEQMSSWVRDEVLGVILQYR-M---------QEELPTFFTSNFDFDELEH 267 (306)
T ss_pred CCccccHHHHHHHHHHHHHHH-H---------HCCCeEEEECCCCHHHHHH
Confidence 64 4555665565544 431 1 1234589999998877654
No 477
>PRK06921 hypothetical protein; Provisional
Probab=98.19 E-value=1.9e-06 Score=91.73 Aligned_cols=104 Identities=16% Similarity=0.187 Sum_probs=65.6
Q ss_pred cceeecCCCCchHHHHHHHHHHhcCC-CCceeEeeccccccccccccccCCCCCccccccCcchhHHHHhCCCeEEEEeC
Q 003088 661 AMLFCGPTGVGKTELAKSLAACYFGS-ESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRRRPFTLLLLDE 739 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~l~~~-~~~~i~i~~~~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~i~~~~~~vl~lDE 739 (849)
+++|+|++|||||++|.+|++.+... +..++.+...++...... .+ .........+... .+|+|||
T Consensus 119 ~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~--~~---------~~~~~~~~~~~~~--dlLiIDD 185 (266)
T PRK06921 119 SIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKD--DF---------DLLEAKLNRMKKV--EVLFIDD 185 (266)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHH--HH---------HHHHHHHHHhcCC--CEEEEec
Confidence 59999999999999999999988654 556666666544332100 00 0001112223333 4999999
Q ss_pred ccc-------cCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCchhhh
Q 003088 740 IEK-------AHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIA 787 (849)
Q Consensus 740 id~-------l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~ 787 (849)
++. ++...+..|+.+++...- .+.-+|+|||..+..+.
T Consensus 186 l~~~~~g~e~~t~~~~~~lf~iin~R~~----------~~k~tIitsn~~~~el~ 230 (266)
T PRK06921 186 LFKPVNGKPRATEWQIEQMYSVLNYRYL----------NHKPILISSELTIDELL 230 (266)
T ss_pred cccccCCCccCCHHHHHHHHHHHHHHHH----------CCCCEEEECCCCHHHHh
Confidence 944 456667788888876220 12237889999877654
No 478
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.17 E-value=8.4e-06 Score=93.59 Aligned_cols=78 Identities=27% Similarity=0.477 Sum_probs=59.1
Q ss_pred cceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccccccCCCCCccccccCcchhHHHH-------hCCCe
Q 003088 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIR-------RRPFT 733 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~i~-------~~~~~ 733 (849)
-+||+||||-|||++|+.+|+. ++..++.+|.++-...+.+. ..+..++. ...+.
T Consensus 328 ilLL~GppGlGKTTLAHViAkq---aGYsVvEINASDeRt~~~v~---------------~kI~~avq~~s~l~adsrP~ 389 (877)
T KOG1969|consen 328 ILLLCGPPGLGKTTLAHVIAKQ---AGYSVVEINASDERTAPMVK---------------EKIENAVQNHSVLDADSRPV 389 (877)
T ss_pred eEEeecCCCCChhHHHHHHHHh---cCceEEEecccccccHHHHH---------------HHHHHHHhhccccccCCCcc
Confidence 3889999999999999999998 57889999988754432221 11222221 12346
Q ss_pred EEEEeCccccCHHHHHHHHHHhh
Q 003088 734 LLLLDEIEKAHPDIFNILLQVFE 756 (849)
Q Consensus 734 vl~lDEid~l~~~~~~~Ll~~le 756 (849)
+|++||||-.++.+.+.|+..+.
T Consensus 390 CLViDEIDGa~~~~Vdvilslv~ 412 (877)
T KOG1969|consen 390 CLVIDEIDGAPRAAVDVILSLVK 412 (877)
T ss_pred eEEEecccCCcHHHHHHHHHHHH
Confidence 89999999999999999999997
No 479
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.16 E-value=7.9e-06 Score=88.42 Aligned_cols=173 Identities=16% Similarity=0.222 Sum_probs=93.1
Q ss_pred cHHHHHHHHHHHhc--CCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhh----------h---hc
Q 003088 295 RETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGL----------L---MA 359 (849)
Q Consensus 295 ~~~~i~~l~~~l~~--~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~----------~---~~ 359 (849)
|+.+++++.+.|.. ....-+.|+|++|+|||++|..+++....... . +. ++.++++. + +.
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~---f-~~-v~wv~~~~~~~~~~~~~~i~~~l~ 75 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNR---F-DG-VIWVSLSKNPSLEQLLEQILRQLG 75 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCC---C-TE-EEEEEEES-SCCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccc---c-cc-cccccccccccccccccccccccc
Confidence 57889999999977 55667799999999999999999987431111 1 11 11122111 1 11
Q ss_pred cc----cccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhc--CCCeEEEEccChH
Q 003088 360 GA----KERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG--RGELQCIASTTQD 433 (849)
Q Consensus 360 ~~----~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le--~~~i~vI~at~~~ 433 (849)
.. ....+.+.....+.+.++ .++++|++|+++... .. +.+...+. ..+..+|.||...
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~L~-~~~~LlVlDdv~~~~--------------~~-~~l~~~~~~~~~~~kilvTTR~~ 139 (287)
T PF00931_consen 76 EPDSSISDPKDIEELQDQLRELLK-DKRCLLVLDDVWDEE--------------DL-EELREPLPSFSSGSKILVTTRDR 139 (287)
T ss_dssp CC-STSSCCSSHHHHHHHHHHHHC-CTSEEEEEEEE-SHH--------------HH--------HCHHSS-EEEEEESCG
T ss_pred ccccccccccccccccccchhhhc-cccceeeeeeecccc--------------cc-ccccccccccccccccccccccc
Confidence 11 022344554444444443 448999999998772 11 11222221 2356777777765
Q ss_pred HHHHHhhccHHHHhccccEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhc
Q 003088 434 EHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495 (849)
Q Consensus 434 ~~~~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~ 495 (849)
. +-..+......+.++.++.++..+++......-.... ....++....+++.+++
T Consensus 140 ~------v~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~-~~~~~~~~~~i~~~c~g 194 (287)
T PF00931_consen 140 S------VAGSLGGTDKVIELEPLSEEEALELFKKRAGRKESES-PEDLEDLAKEIVEKCGG 194 (287)
T ss_dssp G------GGTTHHSCEEEEECSS--HHHHHHHHHHHHTSHS-----TTSCTHHHHHHHHTTT
T ss_pred c------ccccccccccccccccccccccccccccccccccccc-ccccccccccccccccc
Confidence 3 1112222255799999999999999987654211000 11123345566666665
No 480
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.14 E-value=1.4e-05 Score=83.07 Aligned_cols=100 Identities=26% Similarity=0.415 Sum_probs=66.5
Q ss_pred ceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccccccCCCCCccccccCcchhHHHHhCCCeEEEEeCcc
Q 003088 662 MLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRRRPFTLLLLDEIE 741 (849)
Q Consensus 662 lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~i~~~~~~vl~lDEid 741 (849)
-.++||+|||||+..+.+|+.+ +.+++.++|++..+.....+ .+.++.. .++++.|||++
T Consensus 35 ~~~~GpagtGKtetik~La~~l---G~~~~vfnc~~~~~~~~l~r---------------il~G~~~--~GaW~cfdefn 94 (231)
T PF12774_consen 35 GALSGPAGTGKTETIKDLARAL---GRFVVVFNCSEQMDYQSLSR---------------ILKGLAQ--SGAWLCFDEFN 94 (231)
T ss_dssp EEEESSTTSSHHHHHHHHHHCT---T--EEEEETTSSS-HHHHHH---------------HHHHHHH--HT-EEEEETCC
T ss_pred CCCcCCCCCCchhHHHHHHHHh---CCeEEEecccccccHHHHHH---------------HHHHHhh--cCchhhhhhhh
Confidence 5679999999999999999987 66899999998777544433 3334433 25799999999
Q ss_pred ccCHHHHHHHHHHhhc-------C--eeecCCCceeec-CCeEEEEecCCC
Q 003088 742 KAHPDIFNILLQVFED-------G--HLTDSHGRRVSF-KNALIVMTSNVG 782 (849)
Q Consensus 742 ~l~~~~~~~Ll~~le~-------g--~~~~~~g~~~~~-~~~~iI~tsn~~ 782 (849)
+++.+++..+.+.+.. + .+.- .|..+.. +++.+.+|.|++
T Consensus 95 rl~~~vLS~i~~~i~~i~~al~~~~~~~~~-~g~~i~l~~~~~iFiT~np~ 144 (231)
T PF12774_consen 95 RLSEEVLSVISQQIQSIQDALRAKQKSFTL-EGQEIKLNPNCGIFITMNPG 144 (231)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHCTSSEEEE-TTCEEE--TT-EEEEEE-B-
T ss_pred hhhHHHHHHHHHHHHHHHHhhccccccccc-CCCEEEEccceeEEEeeccc
Confidence 9999987777655542 1 1222 3445544 377788888875
No 481
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=98.13 E-value=2.1e-05 Score=83.07 Aligned_cols=165 Identities=21% Similarity=0.282 Sum_probs=102.3
Q ss_pred CccccHHHHHHHHHHHh----cCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehh------h----
Q 003088 291 PVIGRETEIQRIIQILC----RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMG------L---- 356 (849)
Q Consensus 291 ~iiG~~~~i~~l~~~l~----~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~------~---- 356 (849)
.++|..++-..+.+++. .+..+.++++||.|+|||++....-....+.+. +.-++.+|.. +
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E-----~~l~v~Lng~~~~dk~al~~I 99 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGE-----NFLLVRLNGELQTDKIALKGI 99 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCC-----eEEEEEECccchhhHHHHHHH
Confidence 56777777766666654 367789999999999999988754444221110 1111222210 0
Q ss_pred -------hhccccccchHHHHHHHHHHHHHhc-----CCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhh-cCCC
Q 003088 357 -------LMAGAKERGELEARVTTLISEIQKS-----GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL-GRGE 423 (849)
Q Consensus 357 -------~~~~~~~~g~~e~~l~~l~~~~~~~-----~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~l-e~~~ 423 (849)
+....+..|.+.+.+..++..++.+ .++|.++||+|.+++.. .+.-+.|++.-.- ++-.
T Consensus 100 ~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~--------rQtllYnlfDisqs~r~P 171 (408)
T KOG2228|consen 100 TRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHS--------RQTLLYNLFDISQSARAP 171 (408)
T ss_pred HHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccch--------hhHHHHHHHHHHhhcCCC
Confidence 1123455677888888888888763 24677778999996532 1233444443221 2556
Q ss_pred eEEEEccChHHHHHHhhccHHHHhccc--cEEecCC-CHHHHHHHHHHHH
Q 003088 424 LQCIASTTQDEHRTQFEKDKALARRFQ--PVLISEP-SQEDAVRILLGLR 470 (849)
Q Consensus 424 i~vI~at~~~~~~~~~~~d~al~~Rf~--~i~~~~p-s~~e~~~iL~~~~ 470 (849)
+.+||.|+.-+.-. .+...+++||. +|.+.++ +.++.+.+++.+.
T Consensus 172 iciig~Ttrld~lE--~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 172 ICIIGVTTRLDILE--LLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred eEEEEeeccccHHH--HHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 88888888655333 45678899995 3666655 7778888877655
No 482
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=98.12 E-value=3.7e-05 Score=85.06 Aligned_cols=135 Identities=20% Similarity=0.217 Sum_probs=80.7
Q ss_pred cHHHHHHHHHH-HhcCCCCCCeEeCCCCChHHHHHHHHHHH-hhhCCCCccccCCeEEEeehhhhhccccccchHHHHHH
Q 003088 295 RETEIQRIIQI-LCRRTKNNPILLGESGVGKTAIAEGLAIR-IVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVT 372 (849)
Q Consensus 295 ~~~~i~~l~~~-l~~~~~~niLL~GppGtGKT~la~~la~~-l~~~~~p~~~~~~~~~~l~~~~~~~~~~~~g~~e~~l~ 372 (849)
....+..|... -+-.+..|++++||+|||||+++.+++.. ....+ . ...+..+.... . .
T Consensus 192 ~r~k~~~L~rl~~fve~~~Nli~lGp~GTGKThla~~l~~~~a~~sG--------~--f~T~a~Lf~~L------~---~ 252 (449)
T TIGR02688 192 ARQKLLLLARLLPLVEPNYNLIELGPKGTGKSYIYNNLSPYVILISG--------G--TITVAKLFYNI------S---T 252 (449)
T ss_pred hHHHHHHHHhhHHHHhcCCcEEEECCCCCCHHHHHHHHhHHHHHHcC--------C--cCcHHHHHHHH------H---H
Confidence 33444555554 24456789999999999999999999887 32211 0 11122222111 1 1
Q ss_pred HHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCCC-------------eEEEEccChH-H----
Q 003088 373 TLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGE-------------LQCIASTTQD-E---- 434 (849)
Q Consensus 373 ~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~~-------------i~vI~at~~~-~---- 434 (849)
..+..+. ...+|+|||+..+.- ....+..+.|+.+|++|. ++++|-++.. +
T Consensus 253 ~~lg~v~--~~DlLI~DEvgylp~---------~~~~~~v~imK~yMesg~fsRG~~~~~a~as~vfvGNi~~~v~~~~~ 321 (449)
T TIGR02688 253 RQIGLVG--RWDVVAFDEVATLKF---------AKPKELIGILKNYMESGSFTRGDETKSSDASFVFLGNVPLTSEHMVK 321 (449)
T ss_pred HHHhhhc--cCCEEEEEcCCCCcC---------CchHHHHHHHHHHHHhCceeccceeeeeeeEEEEEcccCCcchhhcC
Confidence 2222222 235999999999731 235567899999998544 3556655421 1
Q ss_pred -------HHHHhhccHHHHhccc----cEEecCCCHH
Q 003088 435 -------HRTQFEKDKALARRFQ----PVLISEPSQE 460 (849)
Q Consensus 435 -------~~~~~~~d~al~~Rf~----~i~~~~ps~~ 460 (849)
+-+.+. |.||..||+ -.++|..+.+
T Consensus 322 ~~~Lf~~lP~~~~-DsAflDRiH~yiPGWeipk~~~e 357 (449)
T TIGR02688 322 NSDLFSPLPEFMR-DSAFLDRIHGYLPGWEIPKIRKE 357 (449)
T ss_pred cccccccCChhhh-hhHHHHhhhccCCCCcCccCCHH
Confidence 112233 789999997 2788877665
No 483
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.10 E-value=5.7e-06 Score=75.45 Aligned_cols=94 Identities=22% Similarity=0.421 Sum_probs=58.5
Q ss_pred ceeecCCCCchHHHHHHHHHHhcCCC-----CceeEeeccccccccccccccCCCCCccccccCcchhHHHHhCCCeEEE
Q 003088 662 MLFCGPTGVGKTELAKSLAACYFGSE-----SSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRRRPFTLLL 736 (849)
Q Consensus 662 lL~~Gp~GtGKt~lA~~la~~l~~~~-----~~~i~i~~~~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~i~~~~~~vl~ 736 (849)
|+|+||||+|||++|+.|++.+...- ..++..+. ..++ +-||. ...+++
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~~~~--------~~~~------w~gY~------------~q~vvi 54 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYTRNP--------GDKF------WDGYQ------------GQPVVI 54 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEeCCC--------ccch------hhccC------------CCcEEE
Confidence 57999999999999999998773211 11111000 0011 11221 124999
Q ss_pred EeCccccCHH----HHHHHHHHhhcCeeecCC----CceeecCCeEEEEecCC
Q 003088 737 LDEIEKAHPD----IFNILLQVFEDGHLTDSH----GRRVSFKNALIVMTSNV 781 (849)
Q Consensus 737 lDEid~l~~~----~~~~Ll~~le~g~~~~~~----g~~~~~~~~~iI~tsn~ 781 (849)
+||+...... ....|+++++...+.-.. .+...+.--+||+|||.
T Consensus 55 ~DD~~~~~~~~~~~~~~~l~~l~s~~~~~~~~a~~~~K~~~~~s~~vi~tsN~ 107 (107)
T PF00910_consen 55 IDDFGQDNDGYNYSDESELIRLISSNPFQPNMADLEDKGTPFNSKLVIITSNF 107 (107)
T ss_pred EeecCccccccchHHHHHHHHHHhcCCcccccccHhhCCCccCCCEEEEcCCC
Confidence 9999888754 788899999887765431 12234555678888883
No 484
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=98.08 E-value=2.5e-05 Score=79.64 Aligned_cols=127 Identities=14% Similarity=0.155 Sum_probs=85.3
Q ss_pred cceeecCCC-CchHHHHHHHHHHhcCCCCceeEeeccccccccccccccCC------CCCccccccCcchhHHHHhC---
Q 003088 661 AMLFCGPTG-VGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGS------PPGYVGYEEGGLLTEAIRRR--- 730 (849)
Q Consensus 661 ~lL~~Gp~G-tGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~------~~g~vg~~~~~~l~~~i~~~--- 730 (849)
.+||.|..+ +||..++..+++.++..+ +....+.+- .++.. ....++.++.+.+.+.+...
T Consensus 17 AYLfeG~n~~~~~~~~~~f~~~~l~~~~-----i~~~~HPD~----~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~ 87 (263)
T PRK06581 17 SWLIEAENIEQALKDLEKFIYIKLFKNS-----IPLENNPDY----HFIARETSATSNAKNISIEQIRKLQDFLSKTSAI 87 (263)
T ss_pred eeeEeCCChhhHHHHHHHHHHHHHhccC-----cccCCCCCE----EEEeccccccccCCcccHHHHHHHHHHHhhCccc
Confidence 499999998 999999999999885542 122222111 11111 01233444333444444433
Q ss_pred -CCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhH
Q 003088 731 -PFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGM 809 (849)
Q Consensus 731 -~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~ 809 (849)
++.|++|+++|+|+..+.|+||+.||+ +..+++||++|+....
T Consensus 88 g~~KViII~~ae~mt~~AANALLKtLEE-----------PP~~t~fILit~~~~~------------------------- 131 (263)
T PRK06581 88 SGYKVAIIYSAELMNLNAANSCLKILED-----------APKNSYIFLITSRAAS------------------------- 131 (263)
T ss_pred CCcEEEEEechHHhCHHHHHHHHHhhcC-----------CCCCeEEEEEeCChhh-------------------------
Confidence 357999999999999999999999999 4568888886654221
Q ss_pred HHHHHHHHHhhCChHHhhccccEEEcCCCCHHHHc
Q 003088 810 KTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVC 844 (849)
Q Consensus 810 ~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~ 844 (849)
+.|.+++|| ..+.|.........
T Consensus 132 -----------LLpTIrSRC-q~i~~~~p~~~~~~ 154 (263)
T PRK06581 132 -----------IISTIRSRC-FKINVRSSILHAYN 154 (263)
T ss_pred -----------CchhHhhce-EEEeCCCCCHHHHH
Confidence 678888888 77788877765443
No 485
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.06 E-value=5.2e-05 Score=72.13 Aligned_cols=141 Identities=17% Similarity=0.177 Sum_probs=77.8
Q ss_pred CCCeEeCCCCChHHHHHHHHHHHhhhCCCC-------cccc-----CCeEEEeehhh------hhccc----cc---cch
Q 003088 312 NNPILLGESGVGKTAIAEGLAIRIVQAEVP-------VFLL-----SKRIMSLDMGL------LMAGA----KE---RGE 366 (849)
Q Consensus 312 ~niLL~GppGtGKT~la~~la~~l~~~~~p-------~~~~-----~~~~~~l~~~~------~~~~~----~~---~g~ 366 (849)
-.+.++|+||+||||++.-++..+.+.++. ..-. +.+++.++-+. .-.+. +| ...
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~v~~ 85 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVNVEG 85 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEeeHHH
Confidence 468999999999999999999998765321 1111 22333322110 00011 11 124
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCCCeEEEEccChHHHHHHhhccH---
Q 003088 367 LEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDK--- 443 (849)
Q Consensus 367 ~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~~i~vI~at~~~~~~~~~~~d~--- 443 (849)
+++..-..++.+... -.|++||||.-|- -.+..+...+...|..++. +|++--.. .-+|
T Consensus 86 le~i~~~al~rA~~~-aDvIIIDEIGpME----------lks~~f~~~ve~vl~~~kp-liatlHrr------sr~P~v~ 147 (179)
T COG1618 86 LEEIAIPALRRALEE-ADVIIIDEIGPME----------LKSKKFREAVEEVLKSGKP-LIATLHRR------SRHPLVQ 147 (179)
T ss_pred HHHHhHHHHHHHhhc-CCEEEEecccchh----------hccHHHHHHHHHHhcCCCc-EEEEEecc------cCChHHH
Confidence 444444444444433 2499999999992 1245666777777776654 55543222 1233
Q ss_pred HHHhccccEEecCCCHHHHHHHHHHHHHH
Q 003088 444 ALARRFQPVLISEPSQEDAVRILLGLREK 472 (849)
Q Consensus 444 al~~Rf~~i~~~~ps~~e~~~iL~~~~~~ 472 (849)
.+++++..+.| .+.+.|-.|+..++..
T Consensus 148 ~ik~~~~v~v~--lt~~NR~~i~~~Il~~ 174 (179)
T COG1618 148 RIKKLGGVYVF--LTPENRNRILNEILSV 174 (179)
T ss_pred HhhhcCCEEEE--EccchhhHHHHHHHHH
Confidence 34445554443 4555555777666553
No 486
>PRK14700 recombination factor protein RarA; Provisional
Probab=98.05 E-value=1e-05 Score=85.33 Aligned_cols=91 Identities=19% Similarity=0.200 Sum_probs=77.7
Q ss_pred hhhhcCCCeEEEEccChHHHHHHhhccHHHHhccccEEecCCCHHHHHHHHHHHHHHHH--hhcCCccCHHHHHHHHHhh
Q 003088 416 KPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYE--AHHNCKFTLEAINAAVHLS 493 (849)
Q Consensus 416 ~~~le~~~i~vI~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL~~~~~~~~--~~~~~~i~~~~l~~~a~ls 493 (849)
++.+|+|.+++|||||.++ +|.++++|++|++++.+.+++.++..++|+..+.... ....+.++++++..++..+
T Consensus 1 Lp~vE~G~i~LIGATTENP---~f~vn~ALlSR~~v~~l~~L~~~di~~il~ral~~~~~~~~~~~~i~~~al~~ia~~a 77 (300)
T PRK14700 1 MPYVESGKIILIGATTENP---TYYLNDALVSRLFILRLKRLSLVATQKLIEKALSQDEVLAKHKFKIDDGLYNAMHNYN 77 (300)
T ss_pred CCCccCCcEEEEeecCCCc---cceecHhhhhhhheeeecCCCHHHHHHHHHHHHHhhhccCCcCCCcCHHHHHHHHHhc
Confidence 3678999999999999997 7899999999999999999999999999999876532 1235789999999999999
Q ss_pred hcccccCcchhhHHHHHHHHhh
Q 003088 494 ARYISDRYLPDKAIDLVDEAGS 515 (849)
Q Consensus 494 ~~~~~~r~~p~~ai~ll~~a~~ 515 (849)
++... .+++.++.++.
T Consensus 78 ~GDaR------~aLN~LE~a~~ 93 (300)
T PRK14700 78 EGDCR------KILNLLERMFL 93 (300)
T ss_pred CCHHH------HHHHHHHHHHh
Confidence 98653 77888888653
No 487
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.04 E-value=0.00018 Score=73.83 Aligned_cols=177 Identities=19% Similarity=0.174 Sum_probs=100.2
Q ss_pred CCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEee------hhhhhcccccc--chHHHHHHHHHHHHHh
Q 003088 309 RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD------MGLLMAGAKER--GELEARVTTLISEIQK 380 (849)
Q Consensus 309 ~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~------~~~~~~~~~~~--g~~e~~l~~l~~~~~~ 380 (849)
....-+.++|+.|+|||.+++++...+.++.+-......+.+... +..+....+.. -..+..-+.+...+++
T Consensus 49 d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~ 128 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKK 128 (269)
T ss_pred cCCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHh
Confidence 344457899999999999999888877655433222222222211 11111111111 1334444555555666
Q ss_pred cC-CeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhc--CCCeEEEEccChHHHHHH-hhccHHHHhcccc-EEec
Q 003088 381 SG-DVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG--RGELQCIASTTQDEHRTQ-FEKDKALARRFQP-VLIS 455 (849)
Q Consensus 381 ~~-~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le--~~~i~vI~at~~~~~~~~-~~~d~al~~Rf~~-i~~~ 455 (849)
++ +.++++||+|.+.. ...++..+|-..-. .+.+.|+..+.+.=.... ...-..+..|+.. ++++
T Consensus 129 g~r~v~l~vdEah~L~~----------~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~ 198 (269)
T COG3267 129 GKRPVVLMVDEAHDLND----------SALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELP 198 (269)
T ss_pred CCCCeEEeehhHhhhCh----------hHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecC
Confidence 54 59999999999932 23333333333222 233445544443210000 0111344558885 9999
Q ss_pred CCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhcc
Q 003088 456 EPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496 (849)
Q Consensus 456 ~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~ 496 (849)
+.+.++....|+..++.- ....--++++++..+...+++|
T Consensus 199 P~~~~~t~~yl~~~Le~a-~~~~~l~~~~a~~~i~~~sqg~ 238 (269)
T COG3267 199 PLTEAETGLYLRHRLEGA-GLPEPLFSDDALLLIHEASQGI 238 (269)
T ss_pred CcChHHHHHHHHHHHhcc-CCCcccCChhHHHHHHHHhccc
Confidence 999999999998887744 2222346788888887777763
No 488
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=98.04 E-value=5.4e-06 Score=94.68 Aligned_cols=180 Identities=16% Similarity=0.215 Sum_probs=107.6
Q ss_pred cccHHHHHHHHHHHhc--CCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehh-hhhccccccchHHH
Q 003088 293 IGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMG-LLMAGAKERGELEA 369 (849)
Q Consensus 293 iG~~~~i~~l~~~l~~--~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~-~~~~~~~~~g~~e~ 369 (849)
++.+..++.+...+.+ ...-++++.|+|||||-.++++|.+.-. ..-|+...+|.-+.-++. +...|.. .|.++.
T Consensus 316 ~~~d~s~a~l~rk~~rv~~~~~pvll~GEtGtGKe~laraiH~~s~-~~gpfvAvNCaAip~~liesELFGy~-~GafTg 393 (606)
T COG3284 316 PLLDPSRATLLRKAERVAATDLPVLLQGETGTGKEVLARAIHQNSE-AAGPFVAVNCAAIPEALIESELFGYV-AGAFTG 393 (606)
T ss_pred cccCHHHHHHHHHHHHHhhcCCCeEecCCcchhHHHHHHHHHhccc-ccCCeEEEEeccchHHhhhHHHhccC-cccccc
Confidence 4566666666665544 3456789999999999999999998775 555554444444433221 1111211 223321
Q ss_pred HHH-HHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCCC------------eEEEEccChHHHH
Q 003088 370 RVT-TLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGE------------LQCIASTTQDEHR 436 (849)
Q Consensus 370 ~l~-~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~~------------i~vI~at~~~~~~ 436 (849)
... .....+....++.||+|||..| ..++|..|+.+|+.+. |+||+||+.+= .
T Consensus 394 a~~kG~~g~~~~A~gGtlFldeIgd~-------------p~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~dl-~ 459 (606)
T COG3284 394 ARRKGYKGKLEQADGGTLFLDEIGDM-------------PLALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRDL-A 459 (606)
T ss_pred chhccccccceecCCCccHHHHhhhc-------------hHHHHHHHHHHHhhCceeccCCcceeEEEEEEeccCcCH-H
Confidence 111 1111233345679999999999 6788889999997654 57888887652 1
Q ss_pred HHhhccHHH----Hhcccc--EEecCC-CHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHH
Q 003088 437 TQFEKDKAL----ARRFQP--VLISEP-SQEDAVRILLGLREKYEAHHNCKFTLEAINAAV 490 (849)
Q Consensus 437 ~~~~~d~al----~~Rf~~--i~~~~p-s~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a 490 (849)
.. --+..| .=|+.. |++|++ ...++...|..+..++.. ..+.++++++..+.
T Consensus 460 ~l-v~~g~fredLyyrL~~~~i~lP~lr~R~d~~~~l~~~~~~~~~-~~~~l~~~~~~~l~ 518 (606)
T COG3284 460 QL-VEQGRFREDLYYRLNAFVITLPPLRERSDRIPLLDRILKREND-WRLQLDDDALARLL 518 (606)
T ss_pred HH-HHcCCchHHHHHHhcCeeeccCchhcccccHHHHHHHHHHccC-CCccCCHHHHHHHH
Confidence 11 112223 336664 455444 344556666666655443 66889998887654
No 489
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.01 E-value=8.6e-06 Score=89.42 Aligned_cols=174 Identities=17% Similarity=0.239 Sum_probs=106.1
Q ss_pred ccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcC--CCCceeEeeccccccccccc-
Q 003088 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFG--SESSMLRLDMSEYMERHTVS- 705 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~--~~~~~i~i~~~~~~~~~~~~- 705 (849)
..++|.+.-+..+...+...-.+.. .+.+.+.|-||||||.+-..+-..+-. .....+.++|..+.....+.
T Consensus 150 ~~l~gRe~e~~~v~~F~~~hle~~t-----~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~ 224 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLHLELNT-----SGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFK 224 (529)
T ss_pred CCccchHHHHHHHHHHHHhhhhccc-----CcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHH
Confidence 5688888888888877766433222 246999999999999987755443311 12234889998766543222
Q ss_pred cccCCC-CCccccccCcc----hhHHHHhCC-CeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEec
Q 003088 706 KLIGSP-PGYVGYEEGGL----LTEAIRRRP-FTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTS 779 (849)
Q Consensus 706 ~l~g~~-~g~vg~~~~~~----l~~~i~~~~-~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ts 779 (849)
.+++.- .+.++...+.+ |.....+.. .-|+++||+|.+...-+..|+.+++--.+ ...++++|..+
T Consensus 225 kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~l--------p~sr~iLiGiA 296 (529)
T KOG2227|consen 225 KIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKL--------PNSRIILIGIA 296 (529)
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccC--------Ccceeeeeeeh
Confidence 122210 01112222222 222333332 45899999999998888888888875331 22356666666
Q ss_pred CCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhcc---ccEEEcCCCCHHHHccccC
Q 003088 780 NVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRI---DEVVVFRSLEKAQVCQLPL 848 (849)
Q Consensus 780 n~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~---d~~i~f~pl~~~~~~~I~~ 848 (849)
|.- + +...|-|.|..|+ ...+.|+||+.++|.+|+.
T Consensus 297 Nsl--D-------------------------------lTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~ 335 (529)
T KOG2227|consen 297 NSL--D-------------------------------LTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQ 335 (529)
T ss_pred hhh--h-------------------------------HHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHH
Confidence 641 1 1112455565544 3689999999999999974
No 490
>PF05729 NACHT: NACHT domain
Probab=97.96 E-value=2.1e-05 Score=77.23 Aligned_cols=111 Identities=18% Similarity=0.228 Sum_probs=61.8
Q ss_pred ceeecCCCCchHHHHHHHHHHhcCCC------CceeEeeccccccccc---cccccCCCCCccccccCcchhHHHHhCCC
Q 003088 662 MLFCGPTGVGKTELAKSLAACYFGSE------SSMLRLDMSEYMERHT---VSKLIGSPPGYVGYEEGGLLTEAIRRRPF 732 (849)
Q Consensus 662 lL~~Gp~GtGKt~lA~~la~~l~~~~------~~~i~i~~~~~~~~~~---~~~l~g~~~g~vg~~~~~~l~~~i~~~~~ 732 (849)
++++|++|+|||++++.++..+.... .-.+.+.+........ ...++..............+.......+.
T Consensus 3 l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 82 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNKR 82 (166)
T ss_pred EEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCCc
Confidence 88999999999999999998773332 1233445544443321 11111110000000000122344556667
Q ss_pred eEEEEeCccccCHHHH--------HHHHHHhhcCeeecCCCceeecCCeEEEEecCCC
Q 003088 733 TLLLLDEIEKAHPDIF--------NILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVG 782 (849)
Q Consensus 733 ~vl~lDEid~l~~~~~--------~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~ 782 (849)
.+|+||.+|.+..... +.|.+++... ..+++.+|+|+...
T Consensus 83 ~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~----------~~~~~~liit~r~~ 130 (166)
T PF05729_consen 83 VLLILDGLDELEEQDQSQERQRLLDLLSQLLPQA----------LPPGVKLIITSRPR 130 (166)
T ss_pred eEEEEechHhcccchhhhHHHHHHHHHHHHhhhc----------cCCCCeEEEEEcCC
Confidence 8999999999976432 3444555431 23467788888763
No 491
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=97.96 E-value=1e-05 Score=84.24 Aligned_cols=44 Identities=25% Similarity=0.547 Sum_probs=33.0
Q ss_pred ccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHh
Q 003088 631 VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACY 683 (849)
Q Consensus 631 i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l 683 (849)
++|.+..++.|.+.+... +..+++++||.|+|||++.+.+.+.+
T Consensus 1 F~gR~~el~~l~~~l~~~---------~~~~~~l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG---------PSQHILLYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp S-S-HHHHHHHHHCHHH-----------SSEEEEEESTTSSHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhh---------cCcEEEEEcCCcCCHHHHHHHHHHHh
Confidence 367888888887777642 11349999999999999999999886
No 492
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.94 E-value=3.5e-05 Score=85.48 Aligned_cols=134 Identities=17% Similarity=0.262 Sum_probs=82.9
Q ss_pred cceeecCCCCchHHHHHHHHHHhcCCCC--ceeEeeccccccccccccccCCCCCccccccCcchhHHHHhCCCeEEEEe
Q 003088 661 AMLFCGPTGVGKTELAKSLAACYFGSES--SMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRRRPFTLLLLD 738 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~l~~~~~--~~i~i~~~~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~i~~~~~~vl~lD 738 (849)
.++|||++|.|||+|.+++++.....+. .++.+....+......... . .....|.+.. .--+|+||
T Consensus 115 plfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~-~--------~~~~~Fk~~y---~~dlllID 182 (408)
T COG0593 115 PLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALR-D--------NEMEKFKEKY---SLDLLLID 182 (408)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHH-h--------hhHHHHHHhh---ccCeeeec
Confidence 4999999999999999999998744333 3454444443321100000 0 0011122222 23499999
Q ss_pred CccccCH--HHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHH
Q 003088 739 EIEKAHP--DIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEE 816 (849)
Q Consensus 739 Eid~l~~--~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~ 816 (849)
+|+.+.. ..|..|...+..- .+ ..-.+|+|+...+..+..
T Consensus 183 Diq~l~gk~~~qeefFh~FN~l--~~--------~~kqIvltsdr~P~~l~~---------------------------- 224 (408)
T COG0593 183 DIQFLAGKERTQEEFFHTFNAL--LE--------NGKQIVLTSDRPPKELNG---------------------------- 224 (408)
T ss_pred hHhHhcCChhHHHHHHHHHHHH--Hh--------cCCEEEEEcCCCchhhcc----------------------------
Confidence 9998754 3566666655431 00 012688888877655431
Q ss_pred HHhhCChHHhhccc--cEEEcCCCCHHHHccccC
Q 003088 817 LKAYFRPELLNRID--EVVVFRSLEKAQVCQLPL 848 (849)
Q Consensus 817 l~~~~~pell~R~d--~~i~f~pl~~~~~~~I~~ 848 (849)
+.|.|.+||. .++...|++.+....|+.
T Consensus 225 ----~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~ 254 (408)
T COG0593 225 ----LEDRLRSRLEWGLVVEIEPPDDETRLAILR 254 (408)
T ss_pred ----ccHHHHHHHhceeEEeeCCCCHHHHHHHHH
Confidence 5688999995 688899999888877763
No 493
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=97.93 E-value=3.2e-05 Score=88.22 Aligned_cols=160 Identities=16% Similarity=0.174 Sum_probs=91.6
Q ss_pred CccccHHHHHHHHHHHhcC------------CCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhh
Q 003088 291 PVIGRETEIQRIIQILCRR------------TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM 358 (849)
Q Consensus 291 ~iiG~~~~i~~l~~~l~~~------------~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~ 358 (849)
.|.|.++..+.++=.|... ..-||||+|.||||||-+.+.+++....+.+-.- ++..-+. +.
T Consensus 430 sIye~edvKkglLLqLfGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSG-kGsSavG-----LT 503 (804)
T KOG0478|consen 430 SIYELEDVKKGLLLQLFGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSG-KGSSAVG-----LT 503 (804)
T ss_pred hhhcccchhhhHHHHHhcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceeecC-Cccchhc-----ce
Confidence 3667777666655444222 1258999999999999999999988755422110 0000000 00
Q ss_pred ccccccchHHHHHHHHHHHH---HhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcC--------------
Q 003088 359 AGAKERGELEARVTTLISEI---QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR-------------- 421 (849)
Q Consensus 359 ~~~~~~g~~e~~l~~l~~~~---~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~-------------- 421 (849)
++....++ -++++-+. --.+++|-.|||+|.|. ....+.|...||.
T Consensus 504 ayVtrd~d----tkqlVLesGALVLSD~GiCCIDEFDKM~-------------dStrSvLhEvMEQQTvSIAKAGII~sL 566 (804)
T KOG0478|consen 504 AYVTKDPD----TRQLVLESGALVLSDNGICCIDEFDKMS-------------DSTRSVLHEVMEQQTLSIAKAGIIASL 566 (804)
T ss_pred eeEEecCc----cceeeeecCcEEEcCCceEEchhhhhhh-------------HHHHHHHHHHHHHhhhhHhhcceeeec
Confidence 00000000 01111110 11346799999999992 2335566666663
Q ss_pred -CCeEEEEccChHH--H------HHHhhccHHHHhcccc--EEecCCCHHHHHHHHHHHHHHH
Q 003088 422 -GELQCIASTTQDE--H------RTQFEKDKALARRFQP--VLISEPSQEDAVRILLGLREKY 473 (849)
Q Consensus 422 -~~i~vI~at~~~~--~------~~~~~~d~al~~Rf~~--i~~~~ps~~e~~~iL~~~~~~~ 473 (849)
-+..||++.|+.. | .+-+.+.|.|++||+. +.+++|++..=..+-..+...|
T Consensus 567 NAR~SVLAaANP~~skynp~k~i~eNI~LpptLLSRFDLIylllD~~DE~~Dr~La~HivsLy 629 (804)
T KOG0478|consen 567 NARCSVLAAANPIRSKYNPNKSIIENINLPPTLLSRFDLIFLLLDKPDERSDRRLADHIVALY 629 (804)
T ss_pred cccceeeeeeccccccCCCCCchhhccCCChhhhhhhcEEEEEecCcchhHHHHHHHHHHHhc
Confidence 2346788888532 1 1236678999999994 6677887764455655555544
No 494
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.93 E-value=3.9e-05 Score=79.73 Aligned_cols=122 Identities=19% Similarity=0.256 Sum_probs=74.3
Q ss_pred CCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCc
Q 003088 312 NNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEV 391 (849)
Q Consensus 312 ~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi 391 (849)
....++||+|||||+.++.+|+.+ ++.++.++++.... ...+.+++.-+... ++++++||+
T Consensus 33 ~~~~~~GpagtGKtetik~La~~l----------G~~~~vfnc~~~~~--------~~~l~ril~G~~~~-GaW~cfdef 93 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIKDLARAL----------GRFVVVFNCSEQMD--------YQSLSRILKGLAQS-GAWLCFDEF 93 (231)
T ss_dssp TEEEEESSTTSSHHHHHHHHHHCT----------T--EEEEETTSSS---------HHHHHHHHHHHHHH-T-EEEEETC
T ss_pred CCCCCcCCCCCCchhHHHHHHHHh----------CCeEEEeccccccc--------HHHHHHHHHHHhhc-Cchhhhhhh
Confidence 455799999999999999999988 88888888775431 12355666655554 589999999
Q ss_pred chhhhCCCCCCCCCCccHHHHHHH-------hhhhcC---------------CCeEEEEccChHHHHHHhhccHHHHhcc
Q 003088 392 HTLIGSGTVGRGNKGTGLDISNLL-------KPSLGR---------------GELQCIASTTQDEHRTQFEKDKALARRF 449 (849)
Q Consensus 392 ~~l~~~~~~~~~~~~~~~~~~~~L-------~~~le~---------------~~i~vI~at~~~~~~~~~~~d~al~~Rf 449 (849)
+.|. .++...+ ...+.. ....+..|.| +.|....++++.|+.-|
T Consensus 94 nrl~-------------~~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~n-p~y~gr~~LP~nLk~lF 159 (231)
T PF12774_consen 94 NRLS-------------EEVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMN-PGYAGRSELPENLKALF 159 (231)
T ss_dssp CCSS-------------HHHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE--B-CCCC--S-HHHCTTE
T ss_pred hhhh-------------HHHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeec-cccCCcccCCHhHHHHh
Confidence 9992 2322222 112211 1223444455 34665668899999999
Q ss_pred ccEEecCCCHHHHHHHH
Q 003088 450 QPVLISEPSQEDAVRIL 466 (849)
Q Consensus 450 ~~i~~~~ps~~e~~~iL 466 (849)
.+|.+-.|+.....+++
T Consensus 160 Rpvam~~PD~~~I~ei~ 176 (231)
T PF12774_consen 160 RPVAMMVPDLSLIAEIL 176 (231)
T ss_dssp EEEE--S--HHHHHHHH
T ss_pred heeEEeCCCHHHHHHHH
Confidence 99999999887766665
No 495
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=97.92 E-value=3.9e-05 Score=82.87 Aligned_cols=68 Identities=15% Similarity=0.192 Sum_probs=48.8
Q ss_pred eEEEEccChHHHHHHhh--ccHHHHhccccEEecCC-CHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHh
Q 003088 424 LQCIASTTQDEHRTQFE--KDKALARRFQPVLISEP-SQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHL 492 (849)
Q Consensus 424 i~vI~at~~~~~~~~~~--~d~al~~Rf~~i~~~~p-s~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~l 492 (849)
.++|+.||+.+|.++.. ..++|.+|+..|.+|.. +..+-.+|.+.+..+.. -.+..+.+.+++.++.+
T Consensus 275 ~liiAhsNe~E~~~f~~~~~~eAf~DRi~~I~VPY~L~~s~E~kIY~k~~~~s~-l~~~h~aP~~L~~aA~f 345 (358)
T PF08298_consen 275 ELIIAHSNEEEYNKFKNNKNNEAFKDRIEVIKVPYCLRVSEEVKIYEKLIGKSD-LRDAHIAPHTLEMAARF 345 (358)
T ss_pred eeEEecCCHHHHHHHhccccchhhhhheEEEeccccCCHHHHHHHHHHHhhhcc-ccccccCchHHHHHHHH
Confidence 47899999999988653 56899999999999876 66677778776664210 12456677776665544
No 496
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=97.91 E-value=0.00018 Score=73.52 Aligned_cols=151 Identities=11% Similarity=0.055 Sum_probs=100.0
Q ss_pred HHHHHHHhcCCCCCC-eEeCCCC-ChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhccccccchHHHHHHHHHHH
Q 003088 300 QRIIQILCRRTKNNP-ILLGESG-VGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377 (849)
Q Consensus 300 ~~l~~~l~~~~~~ni-LL~GppG-tGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~~~~~~g~~e~~l~~l~~~ 377 (849)
..+...+...+..|. ||.|..+ +||..++.-+++.+.+.+++.. .+-.++.+....- .+.....-..+.++++.+.
T Consensus 3 ~~L~~~iq~~kLshAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~-~HPD~~~I~pe~~-~~~~~~~I~IdqIReL~~~ 80 (263)
T PRK06581 3 ERLEFNLKHNKLYNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLE-NNPDYHFIARETS-ATSNAKNISIEQIRKLQDF 80 (263)
T ss_pred HHHHHHHHcCcchheeeEeCCChhhHHHHHHHHHHHHHhccCcccC-CCCCEEEEecccc-ccccCCcccHHHHHHHHHH
Confidence 455666666665554 8899998 9999999999998876544321 1233333321100 0000011123445555555
Q ss_pred HH----hcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCC--CeEEEEccChHHHHHHhhccHHHHhcccc
Q 003088 378 IQ----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG--ELQCIASTTQDEHRTQFEKDKALARRFQP 451 (849)
Q Consensus 378 ~~----~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~--~i~vI~at~~~~~~~~~~~d~al~~Rf~~ 451 (849)
+. .++..|++||++|.| ...++|.|+..||.+ ...+|..|+..+ .+.|.++|||+.
T Consensus 81 l~~~p~~g~~KViII~~ae~m-------------t~~AANALLKtLEEPP~~t~fILit~~~~-----~LLpTIrSRCq~ 142 (263)
T PRK06581 81 LSKTSAISGYKVAIIYSAELM-------------NLNAANSCLKILEDAPKNSYIFLITSRAA-----SIISTIRSRCFK 142 (263)
T ss_pred HhhCcccCCcEEEEEechHHh-------------CHHHHHHHHHhhcCCCCCeEEEEEeCChh-----hCchhHhhceEE
Confidence 43 245679999999999 577899999999964 456666666555 788999999999
Q ss_pred EEecCCCHHHHHHHHHHHH
Q 003088 452 VLISEPSQEDAVRILLGLR 470 (849)
Q Consensus 452 i~~~~ps~~e~~~iL~~~~ 470 (849)
+.|..|+...-.+.+....
T Consensus 143 i~~~~p~~~~~~e~~~~~~ 161 (263)
T PRK06581 143 INVRSSILHAYNELYSQFI 161 (263)
T ss_pred EeCCCCCHHHHHHHHHHhc
Confidence 9999998877666665443
No 497
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=97.89 E-value=4.8e-05 Score=89.39 Aligned_cols=206 Identities=13% Similarity=0.159 Sum_probs=111.7
Q ss_pred CCCccccHHHHHHHHHHHhcC------------CCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhh
Q 003088 289 IDPVIGRETEIQRIIQILCRR------------TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGL 356 (849)
Q Consensus 289 l~~iiG~~~~i~~l~~~l~~~------------~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~ 356 (849)
...+.|.++..+.+.=.|... .--|+||+|.||||||.+.+.+++....+-+ ..+..-....+.+
T Consensus 285 aPsIyG~e~VKkAilLqLfgGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vy---tsgkgss~~GLTA 361 (682)
T COG1241 285 APSIYGHEDVKKAILLQLFGGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVY---TSGKGSSAAGLTA 361 (682)
T ss_pred cccccCcHHHHHHHHHHhcCCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEE---EccccccccCcee
Confidence 446889998776665555221 2258999999999999999999987643210 0000000000000
Q ss_pred hhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCCC-------------
Q 003088 357 LMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGE------------- 423 (849)
Q Consensus 357 ~~~~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~~------------- 423 (849)
.. .++...-+..+.. ..+--+.++|..|||++.| ...-...|...+|+..
T Consensus 362 av--~rd~~tge~~Lea--GALVlAD~Gv~cIDEfdKm-------------~~~dr~aihEaMEQQtIsIaKAGI~atLn 424 (682)
T COG1241 362 AV--VRDKVTGEWVLEA--GALVLADGGVCCIDEFDKM-------------NEEDRVAIHEAMEQQTISIAKAGITATLN 424 (682)
T ss_pred EE--EEccCCCeEEEeC--CEEEEecCCEEEEEeccCC-------------ChHHHHHHHHHHHhcEeeecccceeeecc
Confidence 00 0000000000000 0011134679999999999 2333566777776433
Q ss_pred --eEEEEccChHH--H------HHHhhccHHHHhcccc--EEecCCCHHHHHHHHHHHHHHHHhhcCCcc----------
Q 003088 424 --LQCIASTTQDE--H------RTQFEKDKALARRFQP--VLISEPSQEDAVRILLGLREKYEAHHNCKF---------- 481 (849)
Q Consensus 424 --i~vI~at~~~~--~------~~~~~~d~al~~Rf~~--i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i---------- 481 (849)
..+++|+|+.. | ..-+.++++|.+||+. +..+.|+.+.-..+...+...+.....-..
T Consensus 425 ARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLSRFDLifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~~~~~~~~~~~ 504 (682)
T COG1241 425 ARCSVLAAANPKFGRYDPKKTVAENINLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILDKHRGEEPEETISLDGVDEVE 504 (682)
T ss_pred hhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHhhCCeeEEecCCCCccchHHHHHHHHHHHhccccccccccccccccc
Confidence 24577777642 1 2346778999999994 666777776666666666554321111110
Q ss_pred --CHHHHHHHHHhhhcccccCcchhhHHHHHHHHhh
Q 003088 482 --TLEAINAAVHLSARYISDRYLPDKAIDLVDEAGS 515 (849)
Q Consensus 482 --~~~~l~~~a~ls~~~~~~r~~p~~ai~ll~~a~~ 515 (849)
+.+.+.....++..++. ..+++.|...+....-
T Consensus 505 ~~~~~~lrkYI~YAR~~v~-P~lt~ea~e~l~~~Yv 539 (682)
T COG1241 505 ERDFELLRKYISYARKNVT-PVLTEEAREELEDYYV 539 (682)
T ss_pred cCcHHHHHHHHHHHhccCC-cccCHHHHHHHHHHHH
Confidence 34455555566655432 3455666665555533
No 498
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=97.86 E-value=0.00014 Score=77.21 Aligned_cols=176 Identities=13% Similarity=0.227 Sum_probs=104.0
Q ss_pred CCCCccccHHHHHHHHHHHhcC--CCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhh-------
Q 003088 288 LIDPVIGRETEIQRIIQILCRR--TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM------- 358 (849)
Q Consensus 288 ~l~~iiG~~~~i~~l~~~l~~~--~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~------- 358 (849)
.|+.+++....++.++....+- --..+||.|++||||-.+|++-...-.++.. +++.++|..+-
T Consensus 202 ~F~~~v~~S~~mk~~v~qA~k~AmlDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~-------pFlalNCA~lPe~~aEsE 274 (511)
T COG3283 202 GFEQIVAVSPKMKHVVEQAQKLAMLDAPLLITGETGTGKDLLAKACHLASPRHSK-------PFLALNCASLPEDAAESE 274 (511)
T ss_pred chHHHhhccHHHHHHHHHHHHhhccCCCeEEecCCCchHHHHHHHHhhcCcccCC-------CeeEeecCCCchhHhHHH
Confidence 3677888888888877654332 2356899999999999999987666555544 44455544332
Q ss_pred -ccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCCC-------------e
Q 003088 359 -AGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGE-------------L 424 (849)
Q Consensus 359 -~~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~~-------------i 424 (849)
.|... | .+--+.+|+.+ .++.+|+|||..| +...+..|+.+|..|. +
T Consensus 275 lFG~ap-g--~~gk~GffE~A---ngGTVlLDeIgEm-------------Sp~lQaKLLRFL~DGtFRRVGee~Ev~vdV 335 (511)
T COG3283 275 LFGHAP-G--DEGKKGFFEQA---NGGTVLLDEIGEM-------------SPRLQAKLLRFLNDGTFRRVGEDHEVHVDV 335 (511)
T ss_pred HhcCCC-C--CCCccchhhhc---cCCeEEeehhhhc-------------CHHHHHHHHHHhcCCceeecCCcceEEEEE
Confidence 11111 1 00012344433 3458999999999 5677888888887543 6
Q ss_pred EEEEccChH--HHHHHhhccHHHHhccccEEecCCCHHHHHH----HHHHHHHHHHhhcCC---ccCHHHHHHH
Q 003088 425 QCIASTTQD--EHRTQFEKDKALARRFQPVLISEPSQEDAVR----ILLGLREKYEAHHNC---KFTLEAINAA 489 (849)
Q Consensus 425 ~vI~at~~~--~~~~~~~~d~al~~Rf~~i~~~~ps~~e~~~----iL~~~~~~~~~~~~~---~i~~~~l~~~ 489 (849)
+||+||..+ ++-..-+.-..|.-|+.++.+..|...||.+ +.+.+.++.....++ .++++.+..+
T Consensus 336 RVIcatq~nL~~lv~~g~fReDLfyRLNVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L 409 (511)
T COG3283 336 RVICATQVNLVELVQKGKFREDLFYRLNVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVL 409 (511)
T ss_pred EEEecccccHHHHHhcCchHHHHHHHhheeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHHHH
Confidence 889988643 2111112223444477777777665555444 333344444333333 4566655543
No 499
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.85 E-value=0.00015 Score=72.80 Aligned_cols=90 Identities=22% Similarity=0.348 Sum_probs=62.7
Q ss_pred HHHHHhcCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhccccccc----hHHHH-------
Q 003088 302 IIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERG----ELEAR------- 370 (849)
Q Consensus 302 l~~~l~~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~~~~~~g----~~e~~------- 370 (849)
++..++.....|.|+.|||||||||+.+-||+.+..+ ... ...+++..+|-.+-+++. ..| ++-.+
T Consensus 128 li~~ly~~g~lntLiigpP~~GKTTlLRdiaR~~s~g-~~~-~l~kkv~IiDersEIag~-~~gvpq~~~g~R~dVld~c 204 (308)
T COG3854 128 LIKDLYQNGWLNTLIIGPPQVGKTTLLRDIARLLSDG-INQ-FLPKKVGIIDERSEIAGC-LNGVPQHGRGRRMDVLDPC 204 (308)
T ss_pred HHHHHHhcCceeeEEecCCCCChHHHHHHHHHHhhcc-ccc-cCCceEEEEeccchhhcc-ccCCchhhhhhhhhhcccc
Confidence 5666777788899999999999999999999887543 222 236677777766655542 112 11111
Q ss_pred --HHHHHHHHHhcCCeEEEEcCcchh
Q 003088 371 --VTTLISEIQKSGDVILFIDEVHTL 394 (849)
Q Consensus 371 --l~~l~~~~~~~~~~ILfIDEi~~l 394 (849)
-.-++..+++..|-|+++|||...
T Consensus 205 pk~~gmmmaIrsm~PEViIvDEIGt~ 230 (308)
T COG3854 205 PKAEGMMMAIRSMSPEVIIVDEIGTE 230 (308)
T ss_pred hHHHHHHHHHHhcCCcEEEEeccccH
Confidence 123555667788899999999887
No 500
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.84 E-value=4.2e-05 Score=84.62 Aligned_cols=99 Identities=20% Similarity=0.312 Sum_probs=62.2
Q ss_pred cceeecCCCCchHHHHHHHHHH-hcCCCCceeEeeccccccccccccccCCCCCccccccCcchhHHHHhCCCeEEEEeC
Q 003088 661 AMLFCGPTGVGKTELAKSLAAC-YFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRRRPFTLLLLDE 739 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~-l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~i~~~~~~vl~lDE 739 (849)
|+++.||+|||||++|.+++.. ...++ .++ .+ ..|+.. - .....+.+ ....+|+|||
T Consensus 211 Nli~lGp~GTGKThla~~l~~~~a~~sG-~f~--T~---------a~Lf~~-------L-~~~~lg~v--~~~DlLI~DE 268 (449)
T TIGR02688 211 NLIELGPKGTGKSYIYNNLSPYVILISG-GTI--TV---------AKLFYN-------I-STRQIGLV--GRWDVVAFDE 268 (449)
T ss_pred cEEEECCCCCCHHHHHHHHhHHHHHHcC-CcC--cH---------HHHHHH-------H-HHHHHhhh--ccCCEEEEEc
Confidence 5999999999999999998876 21111 111 11 111110 0 00011111 2245999999
Q ss_pred ccccC----HHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCc
Q 003088 740 IEKAH----PDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGS 783 (849)
Q Consensus 740 id~l~----~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~ 783 (849)
+..++ .+.++.|...|++|.++.+.. .-..++-+|+..|...
T Consensus 269 vgylp~~~~~~~v~imK~yMesg~fsRG~~--~~~a~as~vfvGNi~~ 314 (449)
T TIGR02688 269 VATLKFAKPKELIGILKNYMESGSFTRGDE--TKSSDASFVFLGNVPL 314 (449)
T ss_pred CCCCcCCchHHHHHHHHHHHHhCceeccce--eeeeeeEEEEEcccCC
Confidence 99853 458899999999999998543 2235777888778753
Done!