Query 003088
Match_columns 849
No_of_seqs 582 out of 4958
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 12:52:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003088.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003088hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1r6b_X CLPA protein; AAA+, N-t 100.0 1.3E-84 4.3E-89 794.5 59.2 659 85-848 2-663 (758)
2 3pxi_A Negative regulator of g 100.0 3.6E-85 1.2E-89 797.9 48.2 667 80-848 1-672 (758)
3 1qvr_A CLPB protein; coiled co 100.0 1.8E-83 6.2E-88 790.8 59.8 709 80-848 1-767 (854)
4 3pxg_A Negative regulator of g 100.0 7.3E-60 2.5E-64 542.3 29.4 463 80-606 1-468 (468)
5 3cf2_A TER ATPase, transitiona 100.0 2.7E-39 9.4E-44 385.6 21.7 405 287-849 201-659 (806)
6 1ypw_A Transitional endoplasmi 100.0 2.1E-31 7.2E-36 323.9 12.1 418 285-848 199-658 (806)
7 4fcw_A Chaperone protein CLPB; 99.9 4.3E-26 1.5E-30 248.1 22.5 224 615-848 3-226 (311)
8 3fh2_A Probable ATP-dependent 99.9 4E-25 1.4E-29 212.8 17.4 142 79-233 1-144 (146)
9 3fes_A ATP-dependent CLP endop 99.9 2.8E-24 9.6E-29 206.5 12.7 140 80-233 3-144 (145)
10 2y1q_A CLPC N-domain, negative 99.9 1.5E-23 5E-28 203.0 14.4 140 80-233 1-142 (150)
11 1khy_A CLPB protein; alpha hel 99.9 2E-23 6.9E-28 201.5 15.0 139 80-230 1-141 (148)
12 4b4t_J 26S protease regulatory 99.9 6.8E-23 2.3E-27 225.5 20.2 201 287-517 145-369 (405)
13 4b4t_H 26S protease regulatory 99.9 6.8E-22 2.3E-26 220.0 23.1 201 287-517 206-430 (467)
14 4b4t_I 26S protease regulatory 99.9 2.6E-22 9E-27 221.1 19.1 201 287-517 179-403 (437)
15 1jbk_A CLPB protein; beta barr 99.9 1.9E-22 6.5E-27 201.9 16.2 191 271-466 3-194 (195)
16 4b4t_M 26S protease regulatory 99.9 3.9E-22 1.3E-26 222.9 17.5 202 287-517 178-402 (434)
17 2p65_A Hypothetical protein PF 99.9 7.5E-22 2.5E-26 196.9 15.2 184 271-458 3-187 (187)
18 4b4t_L 26S protease subunit RP 99.9 1.2E-21 4.1E-26 219.2 17.8 204 287-517 178-402 (437)
19 1k6k_A ATP-dependent CLP prote 99.9 1E-21 3.4E-26 188.4 14.0 135 85-230 2-139 (143)
20 4b4t_K 26S protease regulatory 99.9 3.9E-21 1.3E-25 214.8 20.1 203 287-517 169-394 (428)
21 3eie_A Vacuolar protein sortin 99.9 3.2E-20 1.1E-24 202.8 26.2 205 285-517 13-235 (322)
22 3zri_A CLPB protein, CLPV; cha 99.9 5.2E-21 1.8E-25 187.5 14.8 141 76-230 16-161 (171)
23 2qp9_X Vacuolar protein sortin 99.9 6.5E-20 2.2E-24 202.9 25.5 214 277-518 38-269 (355)
24 3vfd_A Spastin; ATPase, microt 99.9 3.8E-20 1.3E-24 207.7 23.9 210 278-515 103-331 (389)
25 3d8b_A Fidgetin-like protein 1 99.8 1.3E-19 4.5E-24 200.7 25.4 215 273-515 67-300 (357)
26 3hws_A ATP-dependent CLP prote 99.8 2.2E-21 7.4E-26 215.8 7.7 214 620-848 6-266 (363)
27 1xwi_A SKD1 protein; VPS4B, AA 99.8 1.2E-19 4.2E-24 198.0 21.1 204 287-517 9-230 (322)
28 3b9p_A CG5977-PA, isoform A; A 99.8 5.7E-19 1.9E-23 190.6 23.1 210 279-516 10-239 (297)
29 3pvs_A Replication-associated 99.8 1.8E-19 6E-24 204.6 16.3 203 278-517 14-222 (447)
30 2zan_A Vacuolar protein sortin 99.8 6E-19 2E-23 200.9 17.6 208 283-517 127-352 (444)
31 3syl_A Protein CBBX; photosynt 99.8 2.4E-18 8.3E-23 186.6 21.4 214 289-518 29-263 (309)
32 3h4m_A Proteasome-activating n 99.8 3.7E-18 1.3E-22 183.0 20.9 203 287-518 14-239 (285)
33 3cf2_A TER ATPase, transitiona 99.8 1.4E-19 4.9E-24 216.0 10.6 204 288-518 475-699 (806)
34 1ojl_A Transcriptional regulat 99.8 6.1E-19 2.1E-23 190.8 13.6 181 629-847 2-186 (304)
35 3pxi_A Negative regulator of g 99.8 8.5E-17 2.9E-21 195.7 34.1 178 290-493 491-703 (758)
36 3pfi_A Holliday junction ATP-d 99.8 3.1E-17 1.1E-21 180.3 24.4 195 275-517 14-234 (338)
37 1um8_A ATP-dependent CLP prote 99.8 1.3E-18 4.6E-23 194.2 13.1 215 620-848 12-283 (376)
38 3cf0_A Transitional endoplasmi 99.8 4.1E-18 1.4E-22 184.3 15.7 205 287-518 12-237 (301)
39 3u61_B DNA polymerase accessor 99.8 7.2E-18 2.4E-22 184.3 17.5 197 276-514 12-220 (324)
40 2bjv_A PSP operon transcriptio 99.8 2.4E-18 8.1E-23 182.6 13.0 180 629-846 6-189 (265)
41 2qz4_A Paraplegin; AAA+, SPG7, 99.8 1.9E-17 6.6E-22 174.9 19.5 206 287-518 3-230 (262)
42 3hu3_A Transitional endoplasmi 99.8 9.7E-18 3.3E-22 192.1 18.3 207 283-518 197-423 (489)
43 1ny5_A Transcriptional regulat 99.8 2.3E-17 7.9E-22 184.4 20.9 180 629-846 137-320 (387)
44 3dzd_A Transcriptional regulat 99.8 1.5E-17 5.2E-22 184.5 18.8 179 630-847 130-312 (368)
45 4b4t_J 26S protease regulatory 99.7 9.1E-18 3.1E-22 184.8 14.2 156 629-848 148-329 (405)
46 1lv7_A FTSH; alpha/beta domain 99.7 2.3E-17 7.9E-22 174.1 16.1 209 282-518 4-233 (257)
47 3n70_A Transport activator; si 99.7 1.3E-17 4.5E-22 160.0 12.6 143 630-839 2-145 (145)
48 2chg_A Replication factor C sm 99.7 1.1E-16 3.8E-21 163.7 19.1 197 278-515 5-209 (226)
49 2ce7_A Cell division protein F 99.7 8.8E-17 3E-21 182.7 18.4 203 288-518 14-237 (476)
50 1ofh_A ATP-dependent HSL prote 99.7 5.8E-17 2E-21 175.5 15.7 182 620-848 6-212 (310)
51 2chq_A Replication factor C sm 99.7 9.4E-17 3.2E-21 174.5 16.1 200 278-514 5-208 (319)
52 1iqp_A RFCS; clamp loader, ext 99.7 1.2E-16 4.2E-21 174.2 17.0 207 271-514 6-216 (327)
53 1sxj_B Activator 1 37 kDa subu 99.7 1.9E-16 6.4E-21 172.4 18.0 196 278-514 9-213 (323)
54 1r6b_X CLPA protein; AAA+, N-t 99.7 4.5E-15 1.6E-19 180.7 31.4 179 290-493 458-694 (758)
55 4b4t_I 26S protease regulatory 99.7 3.6E-17 1.2E-21 180.4 11.5 156 629-848 182-363 (437)
56 1sxj_D Activator 1 41 kDa subu 99.7 1.3E-16 4.6E-21 176.1 16.1 207 274-516 21-241 (353)
57 1hqc_A RUVB; extended AAA-ATPa 99.7 9.5E-16 3.2E-20 167.2 21.5 185 281-514 3-215 (324)
58 4b4t_H 26S protease regulatory 99.7 7.3E-17 2.5E-21 179.6 12.7 156 629-848 209-390 (467)
59 3uk6_A RUVB-like 2; hexameric 99.7 2.6E-16 8.8E-21 175.0 17.1 208 278-518 31-311 (368)
60 4b4t_L 26S protease subunit RP 99.7 8.2E-17 2.8E-21 180.1 12.2 156 629-848 181-362 (437)
61 4b4t_M 26S protease regulatory 99.7 8.1E-17 2.8E-21 180.0 12.1 156 629-848 181-362 (434)
62 3pxg_A Negative regulator of g 99.7 2.9E-15 9.9E-20 171.6 24.5 147 629-848 180-335 (468)
63 1njg_A DNA polymerase III subu 99.7 9.4E-16 3.2E-20 158.9 17.9 201 279-515 12-233 (250)
64 1sxj_E Activator 1 40 kDa subu 99.7 1.5E-16 5.2E-21 175.9 12.2 203 279-515 3-242 (354)
65 1jr3_A DNA polymerase III subu 99.7 8.8E-16 3E-20 170.8 18.4 202 278-515 4-226 (373)
66 2x8a_A Nuclear valosin-contain 99.7 1.1E-15 3.8E-20 162.6 18.0 207 287-518 7-234 (274)
67 1sxj_C Activator 1 40 kDa subu 99.7 9.3E-16 3.2E-20 168.7 17.8 196 277-513 12-215 (340)
68 4b4t_K 26S protease regulatory 99.7 3E-16 1E-20 175.3 13.6 156 629-848 172-354 (428)
69 3syl_A Protein CBBX; photosynt 99.7 2.5E-16 8.4E-21 170.8 11.9 174 619-848 21-214 (309)
70 1ofh_A ATP-dependent HSL prote 99.7 1.3E-15 4.5E-20 164.8 17.1 215 290-517 15-273 (310)
71 1sxj_A Activator 1 95 kDa subu 99.6 1.4E-16 4.9E-21 184.9 8.7 202 275-514 24-256 (516)
72 3t15_A Ribulose bisphosphate c 99.6 5.2E-16 1.8E-20 166.9 12.4 161 310-497 35-216 (293)
73 2r62_A Cell division protease 99.6 1.1E-17 3.8E-22 177.6 -1.7 205 286-517 7-233 (268)
74 1g41_A Heat shock protein HSLU 99.6 1.1E-15 3.7E-20 171.2 14.2 78 620-700 6-88 (444)
75 2r44_A Uncharacterized protein 99.6 2.4E-15 8.3E-20 164.7 16.7 186 275-495 12-241 (331)
76 3m6a_A ATP-dependent protease 99.6 5.6E-16 1.9E-20 180.5 11.1 207 594-848 47-263 (543)
77 3te6_A Regulatory protein SIR3 99.6 2.9E-15 9.9E-20 161.3 15.7 223 280-520 12-289 (318)
78 3co5_A Putative two-component 99.6 2.7E-16 9.1E-21 150.5 6.7 138 630-839 5-143 (143)
79 3pfi_A Holliday junction ATP-d 99.6 3.6E-15 1.2E-19 163.8 16.5 157 629-847 29-193 (338)
80 1in4_A RUVB, holliday junction 99.6 5.6E-14 1.9E-18 154.0 25.8 192 279-518 14-231 (334)
81 2c9o_A RUVB-like 1; hexameric 99.6 4.2E-15 1.4E-19 170.0 17.3 217 280-519 26-419 (456)
82 1ixz_A ATP-dependent metallopr 99.6 1.1E-14 3.9E-19 153.1 17.0 204 287-518 13-237 (254)
83 2dhr_A FTSH; AAA+ protein, hex 99.6 4.1E-15 1.4E-19 170.0 14.5 204 286-517 27-251 (499)
84 3eie_A Vacuolar protein sortin 99.6 4.6E-15 1.6E-19 161.9 14.1 161 629-848 18-194 (322)
85 1xwi_A SKD1 protein; VPS4B, AA 99.6 1.6E-14 5.4E-19 157.4 16.0 162 629-848 12-189 (322)
86 1iy2_A ATP-dependent metallopr 99.6 3.5E-14 1.2E-18 151.5 18.1 204 286-517 36-260 (278)
87 1d2n_A N-ethylmaleimide-sensit 99.6 1.6E-14 5.5E-19 153.6 15.4 197 290-515 33-247 (272)
88 4akg_A Glutathione S-transfera 99.6 3.3E-14 1.1E-18 188.1 20.6 140 310-473 1266-1434(2695)
89 3hws_A ATP-dependent CLP prote 99.6 3.1E-14 1E-18 158.1 16.8 192 291-493 16-301 (363)
90 3t15_A Ribulose bisphosphate c 99.6 6.2E-15 2.1E-19 158.5 10.8 159 635-848 13-195 (293)
91 4fcw_A Chaperone protein CLPB; 99.6 5.6E-14 1.9E-18 152.2 18.4 202 290-516 17-277 (311)
92 2r44_A Uncharacterized protein 99.6 2.7E-14 9.3E-19 156.4 16.0 172 619-847 17-194 (331)
93 1l8q_A Chromosomal replication 99.6 5.7E-14 1.9E-18 153.3 18.4 197 288-516 9-214 (324)
94 3nbx_X ATPase RAVA; AAA+ ATPas 99.6 1.3E-14 4.6E-19 165.9 13.7 180 617-847 10-192 (500)
95 3cf0_A Transitional endoplasmi 99.6 1.7E-14 6E-19 155.7 13.5 158 629-848 15-196 (301)
96 2qp9_X Vacuolar protein sortin 99.6 1.6E-14 5.6E-19 159.5 13.6 161 629-848 51-227 (355)
97 3bos_A Putative DNA replicatio 99.5 5.3E-14 1.8E-18 145.9 16.0 199 282-517 19-224 (242)
98 1um8_A ATP-dependent CLP prote 99.5 1.2E-13 3.9E-18 154.2 19.8 212 291-516 22-338 (376)
99 1hqc_A RUVB; extended AAA-ATPa 99.5 3.4E-14 1.2E-18 154.8 14.4 157 629-847 12-177 (324)
100 3m6a_A ATP-dependent protease 99.5 1.9E-14 6.4E-19 167.7 12.6 179 290-493 81-295 (543)
101 2bjv_A PSP operon transcriptio 99.5 3.7E-14 1.3E-18 150.1 13.0 183 288-491 4-219 (265)
102 3vfd_A Spastin; ATPase, microt 99.5 4.2E-14 1.5E-18 158.4 13.7 162 629-848 115-292 (389)
103 2v1u_A Cell division control p 99.5 6E-14 2.1E-18 156.4 14.9 212 290-517 19-256 (387)
104 2zan_A Vacuolar protein sortin 99.5 5.7E-14 2E-18 159.8 14.7 162 629-848 134-311 (444)
105 1g8p_A Magnesium-chelatase 38 99.5 9.4E-14 3.2E-18 153.0 15.7 212 285-518 19-303 (350)
106 2qby_A CDC6 homolog 1, cell di 99.5 2.8E-13 9.6E-18 150.8 19.7 208 290-517 20-252 (386)
107 1fnn_A CDC6P, cell division co 99.5 5E-13 1.7E-17 149.2 21.6 205 290-517 17-254 (389)
108 4akg_A Glutathione S-transfera 99.5 8.1E-13 2.8E-17 175.0 26.5 359 311-779 645-1052(2695)
109 2qby_B CDC6 homolog 3, cell di 99.5 2.7E-13 9.1E-18 151.3 18.8 216 280-517 13-252 (384)
110 2z4s_A Chromosomal replication 99.5 1.2E-13 4.1E-18 156.8 16.1 205 288-518 103-314 (440)
111 1ojl_A Transcriptional regulat 99.5 4.6E-14 1.6E-18 152.4 11.4 179 290-492 2-215 (304)
112 1ypw_A Transitional endoplasmi 99.5 1.2E-15 4.2E-20 185.4 -1.1 204 287-517 474-698 (806)
113 1g41_A Heat shock protein HSLU 99.5 3.1E-13 1E-17 151.4 17.7 105 383-494 251-382 (444)
114 3d8b_A Fidgetin-like protein 1 99.5 1E-13 3.4E-18 153.4 13.1 161 629-847 84-260 (357)
115 3b9p_A CG5977-PA, isoform A; A 99.5 1.5E-13 5.1E-18 148.0 14.1 162 629-847 21-198 (297)
116 3hu3_A Transitional endoplasmi 99.5 6.6E-14 2.2E-18 160.4 11.6 155 629-848 204-382 (489)
117 3h4m_A Proteasome-activating n 99.5 8.4E-14 2.9E-18 148.9 11.6 159 629-848 17-198 (285)
118 2qz4_A Paraplegin; AAA+, SPG7, 99.5 2.1E-13 7.2E-18 143.8 14.0 160 629-848 6-187 (262)
119 2ce7_A Cell division protein F 99.5 4E-13 1.4E-17 152.6 14.9 156 629-848 16-196 (476)
120 1g8p_A Magnesium-chelatase 38 99.4 3.4E-13 1.2E-17 148.5 12.7 172 629-847 24-228 (350)
121 2r62_A Cell division protease 99.4 1.1E-13 3.7E-18 146.7 7.9 158 629-847 11-192 (268)
122 1lv7_A FTSH; alpha/beta domain 99.4 7.8E-13 2.7E-17 139.3 13.8 159 629-847 12-191 (257)
123 3uk6_A RUVB-like 2; hexameric 99.4 5.2E-13 1.8E-17 148.2 12.0 178 629-848 44-269 (368)
124 2c9o_A RUVB-like 1; hexameric 99.4 1E-12 3.5E-17 150.1 14.6 67 628-699 36-102 (456)
125 1a5t_A Delta prime, HOLB; zinc 99.4 1.4E-12 4.7E-17 143.0 14.7 181 295-513 7-208 (334)
126 3f9v_A Minichromosome maintena 99.4 4.6E-14 1.6E-18 165.8 2.7 188 620-842 286-481 (595)
127 3pvs_A Replication-associated 99.4 7.1E-13 2.4E-17 150.4 11.9 143 629-847 26-174 (447)
128 3vkg_A Dynein heavy chain, cyt 99.4 4.2E-12 1.4E-16 168.8 19.8 144 310-473 1303-1472(3245)
129 2chg_A Replication factor C sm 99.4 2.2E-12 7.5E-17 131.5 13.5 147 629-847 17-170 (226)
130 3u61_B DNA polymerase accessor 99.4 1.3E-12 4.4E-17 142.5 12.3 156 611-846 13-173 (324)
131 1qvr_A CLPB protein; coiled co 99.4 4.9E-12 1.7E-16 155.5 16.5 183 290-494 558-799 (854)
132 3n70_A Transport activator; si 99.4 1.1E-12 3.7E-17 125.6 8.4 135 291-457 2-144 (145)
133 1iqp_A RFCS; clamp loader, ext 99.3 2.5E-12 8.6E-17 139.9 12.2 147 629-847 25-178 (327)
134 1jbk_A CLPB protein; beta barr 99.3 1.2E-12 4.2E-17 130.1 8.3 156 628-848 21-195 (195)
135 3k1j_A LON protease, ATP-depen 99.3 1.4E-12 4.7E-17 154.3 9.3 166 629-839 41-288 (604)
136 2chq_A Replication factor C sm 99.3 3.5E-12 1.2E-16 138.2 11.1 147 629-847 17-170 (319)
137 3k1j_A LON protease, ATP-depen 99.3 1.5E-11 5.2E-16 145.3 17.4 221 281-519 32-357 (604)
138 1a5t_A Delta prime, HOLB; zinc 99.3 9.6E-12 3.3E-16 136.2 14.4 161 631-847 4-176 (334)
139 1d2n_A N-ethylmaleimide-sensit 99.3 7.4E-13 2.5E-17 140.7 5.3 161 628-847 32-208 (272)
140 3co5_A Putative two-component 99.3 7.1E-13 2.4E-17 126.6 3.9 129 291-456 5-141 (143)
141 1sxj_B Activator 1 37 kDa subu 99.3 3.7E-12 1.3E-16 138.3 9.8 161 610-847 7-175 (323)
142 3vkg_A Dynein heavy chain, cyt 99.3 2.3E-10 7.8E-15 152.4 28.4 375 313-780 606-1035(3245)
143 2gno_A DNA polymerase III, gam 99.3 5.5E-12 1.9E-16 135.8 10.7 141 633-847 1-148 (305)
144 2gno_A DNA polymerase III, gam 99.3 1.4E-11 4.9E-16 132.6 13.5 146 294-470 1-152 (305)
145 1sxj_D Activator 1 41 kDa subu 99.3 2.6E-12 8.7E-17 141.6 7.7 161 629-847 37-201 (353)
146 2dhr_A FTSH; AAA+ protein, hex 99.3 1.4E-11 4.9E-16 140.7 13.9 155 629-848 31-211 (499)
147 2x8a_A Nuclear valosin-contain 99.3 1.8E-11 6.2E-16 130.0 13.7 156 629-848 10-188 (274)
148 1sxj_C Activator 1 40 kDa subu 99.3 1.2E-11 4.2E-16 135.8 11.7 159 611-847 12-178 (340)
149 1njg_A DNA polymerase III subu 99.3 1.9E-11 6.4E-16 126.2 12.4 160 629-847 23-194 (250)
150 3te6_A Regulatory protein SIR3 99.3 1.5E-11 5.2E-16 132.2 11.5 171 629-848 20-208 (318)
151 1w5s_A Origin recognition comp 99.2 2.4E-10 8.3E-15 128.4 21.2 216 290-517 22-273 (412)
152 1jr3_A DNA polymerase III subu 99.2 2.4E-11 8.1E-16 134.9 12.5 162 629-847 16-187 (373)
153 3nbx_X ATPase RAVA; AAA+ ATPas 99.2 4.4E-11 1.5E-15 136.8 14.1 182 290-494 22-239 (500)
154 2qby_B CDC6 homolog 3, cell di 99.2 1.4E-11 4.9E-16 137.2 9.7 169 629-848 20-207 (384)
155 1fnn_A CDC6P, cell division co 99.2 1.1E-10 3.7E-15 130.1 15.3 176 629-847 17-202 (389)
156 1sxj_E Activator 1 40 kDa subu 99.2 5.6E-11 1.9E-15 131.0 11.0 159 629-847 14-202 (354)
157 2p65_A Hypothetical protein PF 99.2 2.8E-11 9.5E-16 119.9 7.5 148 628-839 21-187 (187)
158 1ixz_A ATP-dependent metallopr 99.2 1.1E-10 3.8E-15 122.4 12.4 156 629-848 16-196 (254)
159 3f8t_A Predicted ATPase involv 99.2 1.1E-10 3.8E-15 129.5 12.1 175 620-838 205-380 (506)
160 1l8q_A Chromosomal replication 99.2 8.2E-11 2.8E-15 128.2 10.9 134 661-848 39-176 (324)
161 2v1u_A Cell division control p 99.1 4.4E-11 1.5E-15 133.1 8.9 176 629-848 19-211 (387)
162 1in4_A RUVB, holliday junction 99.1 4.5E-10 1.5E-14 122.9 15.5 158 629-848 25-190 (334)
163 1sxj_A Activator 1 95 kDa subu 99.1 1.3E-10 4.3E-15 134.9 11.5 136 612-757 27-177 (516)
164 1iy2_A ATP-dependent metallopr 99.1 2.7E-10 9.4E-15 121.2 13.1 156 629-848 40-220 (278)
165 3bos_A Putative DNA replicatio 99.1 1.8E-10 6.2E-15 119.1 10.4 126 661-847 54-183 (242)
166 2qen_A Walker-type ATPase; unk 99.1 1.9E-09 6.3E-14 118.1 18.7 183 290-496 12-238 (350)
167 3f9v_A Minichromosome maintena 99.1 8.1E-12 2.8E-16 146.7 -1.9 200 290-515 295-535 (595)
168 2z4s_A Chromosomal replication 99.0 5.2E-10 1.8E-14 126.9 8.8 135 661-847 132-272 (440)
169 2qby_A CDC6 homolog 1, cell di 99.0 7.4E-10 2.5E-14 123.0 9.6 171 629-847 20-206 (386)
170 2fna_A Conserved hypothetical 98.9 4.6E-09 1.6E-13 115.2 13.3 178 290-496 13-242 (357)
171 1ny5_A Transcriptional regulat 98.9 8.5E-09 2.9E-13 114.9 13.1 179 289-491 136-349 (387)
172 3dzd_A Transcriptional regulat 98.9 1.9E-08 6.5E-13 111.3 15.6 177 291-491 130-340 (368)
173 2w58_A DNAI, primosome compone 98.8 1.1E-08 3.7E-13 103.1 9.1 100 282-394 17-127 (202)
174 3fes_A ATP-dependent CLP endop 98.8 9.6E-09 3.3E-13 98.0 7.7 64 170-233 7-70 (145)
175 3fh2_A Probable ATP-dependent 98.7 1.6E-08 5.5E-13 96.5 8.0 64 170-233 6-69 (146)
176 3ec2_A DNA replication protein 98.7 3.5E-08 1.2E-12 97.5 10.4 104 661-785 40-146 (180)
177 3cmw_A Protein RECA, recombina 98.7 2E-08 6.8E-13 128.1 10.7 84 662-746 1085-1175(1706)
178 3f8t_A Predicted ATPase involv 98.7 4.3E-08 1.5E-12 109.0 11.8 143 289-461 212-385 (506)
179 1khy_A CLPB protein; alpha hel 98.7 2.6E-08 9E-13 95.2 8.6 65 170-234 5-69 (148)
180 3ec2_A DNA replication protein 98.7 1.6E-08 5.3E-13 100.0 6.9 54 283-336 3-63 (180)
181 3zri_A CLPB protein, CLPV; cha 98.7 2.8E-08 9.7E-13 97.0 7.6 63 170-233 24-86 (171)
182 2y1q_A CLPC N-domain, negative 98.7 3.6E-08 1.2E-12 94.5 7.7 64 170-233 5-68 (150)
183 1w5s_A Origin recognition comp 98.6 3.4E-08 1.1E-12 110.8 8.4 177 629-847 22-224 (412)
184 2w58_A DNAI, primosome compone 98.6 2.8E-08 9.6E-13 100.1 6.6 107 661-788 56-165 (202)
185 2kjq_A DNAA-related protein; s 98.6 8.6E-08 3E-12 91.7 9.0 90 661-784 38-127 (149)
186 2qgz_A Helicase loader, putati 98.6 6.1E-08 2.1E-12 104.5 7.4 97 285-394 119-226 (308)
187 1jr3_D DNA polymerase III, del 98.6 3.3E-07 1.1E-11 100.4 13.0 166 309-514 16-189 (343)
188 1k6k_A ATP-dependent CLP prote 98.5 1.5E-07 5.2E-12 89.3 6.6 62 171-234 2-63 (143)
189 3cmu_A Protein RECA, recombina 98.5 1.1E-06 3.9E-11 113.3 16.1 84 661-745 1429-1519(2050)
190 2qgz_A Helicase loader, putati 98.4 1.4E-07 4.7E-12 101.7 5.3 108 660-788 153-264 (308)
191 2kjq_A DNAA-related protein; s 98.4 2.1E-07 7E-12 89.1 6.0 106 310-450 35-140 (149)
192 1tue_A Replication protein E1; 98.3 1E-06 3.4E-11 87.6 7.1 120 298-457 44-179 (212)
193 1u0j_A DNA replication protein 98.2 1.7E-06 5.7E-11 90.0 7.7 133 660-847 105-247 (267)
194 2r2a_A Uncharacterized protein 98.2 1.4E-06 4.8E-11 87.4 6.1 131 314-457 8-153 (199)
195 1u0j_A DNA replication protein 98.1 5E-06 1.7E-10 86.5 9.2 128 299-468 90-249 (267)
196 1tue_A Replication protein E1; 98.1 2.5E-06 8.4E-11 84.8 6.4 97 661-784 60-159 (212)
197 2qen_A Walker-type ATPase; unk 98.1 8.4E-06 2.9E-10 88.7 11.1 54 629-698 12-65 (350)
198 2fna_A Conserved hypothetical 98.0 1E-05 3.4E-10 88.3 8.8 54 629-698 13-66 (357)
199 2vhj_A Ntpase P4, P4; non- hyd 98.0 1.4E-05 4.9E-10 85.1 9.1 110 312-433 124-236 (331)
200 1ye8_A Protein THEP1, hypothet 98.0 2.8E-05 9.5E-10 76.5 10.5 70 380-464 97-170 (178)
201 3upu_A ATP-dependent DNA helic 97.9 3.3E-05 1.1E-09 87.9 11.5 61 277-338 11-72 (459)
202 2r2a_A Uncharacterized protein 97.8 4.7E-05 1.6E-09 76.2 8.2 109 661-781 7-132 (199)
203 1z6t_A APAF-1, apoptotic prote 97.8 0.00013 4.5E-09 85.7 13.4 174 286-495 120-319 (591)
204 2orw_A Thymidine kinase; TMTK, 97.7 4.2E-05 1.4E-09 75.6 6.8 94 662-757 6-102 (184)
205 1jr3_D DNA polymerase III, del 97.6 5E-05 1.7E-09 82.9 6.5 121 661-845 20-149 (343)
206 2a5y_B CED-4; apoptosis; HET: 97.5 0.00039 1.3E-08 80.9 12.6 149 293-469 131-305 (549)
207 2orw_A Thymidine kinase; TMTK, 97.5 2.3E-05 7.9E-10 77.5 1.5 118 314-451 6-132 (184)
208 3e1s_A Exodeoxyribonuclease V, 97.5 0.0038 1.3E-07 72.6 19.8 51 173-234 72-123 (574)
209 2vhj_A Ntpase P4, P4; non- hyd 97.4 0.00015 5.3E-09 77.1 6.9 71 662-745 126-196 (331)
210 3cmw_A Protein RECA, recombina 97.4 0.00016 5.5E-09 92.6 8.0 83 312-397 1083-1175(1706)
211 3sfz_A APAF-1, apoptotic pepti 97.3 0.00057 2E-08 87.3 12.0 154 285-470 119-299 (1249)
212 2r8r_A Sensor protein; KDPD, P 97.3 0.0017 5.9E-08 65.6 12.7 30 309-338 4-33 (228)
213 3cmu_A Protein RECA, recombina 97.3 0.00062 2.1E-08 88.4 11.6 82 308-396 1424-1519(2050)
214 2w0m_A SSO2452; RECA, SSPF, un 97.3 0.00027 9.4E-09 71.8 6.8 117 310-432 22-167 (235)
215 2b8t_A Thymidine kinase; deoxy 97.3 0.00085 2.9E-08 68.1 10.3 96 661-757 14-115 (223)
216 2r8r_A Sensor protein; KDPD, P 97.3 0.00047 1.6E-08 69.7 8.1 108 660-782 7-127 (228)
217 1vt4_I APAF-1 related killer D 97.3 0.0017 5.9E-08 78.9 13.9 43 292-334 130-173 (1221)
218 2b8t_A Thymidine kinase; deoxy 97.2 0.00043 1.5E-08 70.3 7.2 26 313-338 14-39 (223)
219 1ye8_A Protein THEP1, hypothet 97.2 0.00075 2.6E-08 66.2 8.7 22 662-683 3-24 (178)
220 3upu_A ATP-dependent DNA helic 97.1 0.00088 3E-08 76.1 8.9 113 633-757 29-154 (459)
221 1qhx_A CPT, protein (chloramph 97.0 0.0014 4.7E-08 63.8 7.9 24 312-335 4-27 (178)
222 2cvh_A DNA repair and recombin 97.0 0.00072 2.5E-08 68.1 6.0 23 311-333 20-42 (220)
223 3dm5_A SRP54, signal recogniti 96.9 0.022 7.4E-07 63.6 18.0 77 311-394 100-194 (443)
224 2iut_A DNA translocase FTSK; n 96.9 0.0057 2E-07 70.1 13.0 141 311-466 214-419 (574)
225 2dr3_A UPF0273 protein PH0284; 96.8 0.0016 5.4E-08 66.8 7.4 28 310-337 22-49 (247)
226 1xx6_A Thymidine kinase; NESG, 96.8 0.0022 7.7E-08 63.4 7.7 94 662-757 11-107 (191)
227 1n0w_A DNA repair protein RAD5 96.8 0.0028 9.6E-08 64.8 8.6 26 310-335 23-48 (243)
228 1g5t_A COB(I)alamin adenosyltr 96.8 0.0054 1.9E-07 60.5 10.1 31 310-340 27-57 (196)
229 3e1s_A Exodeoxyribonuclease V, 96.7 0.0021 7.2E-08 74.8 7.6 91 661-758 206-306 (574)
230 2fz4_A DNA repair protein RAD2 96.6 0.0055 1.9E-07 62.9 9.2 38 295-335 95-132 (237)
231 3trf_A Shikimate kinase, SK; a 96.6 0.001 3.5E-08 65.2 3.2 25 311-335 5-29 (185)
232 3jvv_A Twitching mobility prot 96.5 0.0022 7.5E-08 70.0 6.0 93 660-758 124-221 (356)
233 2ehv_A Hypothetical protein PH 96.5 0.0032 1.1E-07 64.7 6.6 24 310-333 29-52 (251)
234 1g5t_A COB(I)alamin adenosyltr 96.5 0.018 6.1E-07 56.8 11.4 113 660-786 29-167 (196)
235 2j9r_A Thymidine kinase; TK1, 96.5 0.0047 1.6E-07 61.9 7.3 94 662-757 31-127 (214)
236 1xp8_A RECA protein, recombina 96.4 0.0073 2.5E-07 66.1 9.0 79 310-396 73-166 (366)
237 2i3b_A HCR-ntpase, human cance 96.4 0.0034 1.2E-07 62.0 5.7 24 313-336 3-26 (189)
238 3vaa_A Shikimate kinase, SK; s 96.4 0.0016 5.4E-08 64.9 3.3 26 310-335 24-49 (199)
239 3crm_A TRNA delta(2)-isopenten 96.3 0.0059 2E-07 65.3 7.7 95 313-433 7-105 (323)
240 4a74_A DNA repair and recombin 96.3 0.0065 2.2E-07 61.4 7.5 25 311-335 25-49 (231)
241 3iij_A Coilin-interacting nucl 96.3 0.0025 8.6E-08 62.1 4.1 26 310-335 10-35 (180)
242 3lda_A DNA repair protein RAD5 96.3 0.0085 2.9E-07 66.3 8.7 26 310-335 177-202 (400)
243 1w36_D RECD, exodeoxyribonucle 96.2 0.0067 2.3E-07 71.2 8.1 26 732-757 263-288 (608)
244 1via_A Shikimate kinase; struc 96.2 0.0025 8.6E-08 61.8 3.7 24 312-335 5-28 (175)
245 3hr8_A Protein RECA; alpha and 96.2 0.0083 2.8E-07 65.2 8.1 79 311-396 61-153 (356)
246 2ze6_A Isopentenyl transferase 96.2 0.0063 2.2E-07 63.1 6.9 23 313-335 3-25 (253)
247 3uie_A Adenylyl-sulfate kinase 96.2 0.021 7.2E-07 56.6 10.5 28 309-336 23-50 (200)
248 1xx6_A Thymidine kinase; NESG, 96.2 0.0023 7.9E-08 63.3 3.2 26 314-339 11-36 (191)
249 1y63_A LMAJ004144AAA protein; 96.2 0.0023 7.7E-08 62.9 3.1 25 310-334 9-33 (184)
250 3kb2_A SPBC2 prophage-derived 96.1 0.003 1E-07 60.8 3.8 23 313-335 3-25 (173)
251 2iyv_A Shikimate kinase, SK; t 96.1 0.0029 9.9E-08 61.9 3.7 24 312-335 3-26 (184)
252 1zuh_A Shikimate kinase; alpha 96.1 0.0024 8.2E-08 61.5 3.0 26 310-335 6-31 (168)
253 2ius_A DNA translocase FTSK; n 96.1 0.038 1.3E-06 62.9 13.2 72 384-467 299-374 (512)
254 2z43_A DNA repair and recombin 96.1 0.0086 2.9E-07 64.5 7.6 26 310-335 106-131 (324)
255 2fz4_A DNA repair protein RAD2 96.1 0.0091 3.1E-07 61.2 7.5 103 662-782 111-229 (237)
256 2a5y_B CED-4; apoptosis; HET: 96.1 0.032 1.1E-06 64.6 12.9 44 632-681 131-174 (549)
257 3a8t_A Adenylate isopentenyltr 96.0 0.0067 2.3E-07 65.1 6.3 24 312-335 41-64 (339)
258 2w0m_A SSO2452; RECA, SSPF, un 96.0 0.0099 3.4E-07 60.0 7.3 36 661-696 25-60 (235)
259 3hr8_A Protein RECA; alpha and 96.0 0.012 4.1E-07 64.0 8.2 84 661-745 63-153 (356)
260 1kag_A SKI, shikimate kinase I 95.9 0.0042 1.4E-07 59.9 3.8 24 312-335 5-28 (173)
261 2eyu_A Twitching motility prot 95.9 0.011 3.9E-07 61.5 7.3 88 660-757 26-122 (261)
262 2vli_A Antibiotic resistance p 95.9 0.0072 2.5E-07 58.8 5.5 25 311-335 5-29 (183)
263 3a4m_A L-seryl-tRNA(SEC) kinas 95.9 0.014 4.7E-07 60.7 7.9 27 312-338 5-31 (260)
264 1qhx_A CPT, protein (chloramph 95.9 0.0039 1.3E-07 60.4 3.2 35 661-698 5-39 (178)
265 1v5w_A DMC1, meiotic recombina 95.8 0.015 5.2E-07 63.1 8.2 26 310-335 121-146 (343)
266 3jvv_A Twitching mobility prot 95.8 0.0053 1.8E-07 67.0 4.4 29 309-337 121-149 (356)
267 1aky_A Adenylate kinase; ATP:A 95.8 0.0045 1.6E-07 62.5 3.5 26 310-335 3-28 (220)
268 1w4r_A Thymidine kinase; type 95.8 0.017 5.9E-07 56.8 7.4 90 662-757 23-116 (195)
269 1e6c_A Shikimate kinase; phosp 95.8 0.0051 1.8E-07 59.2 3.7 24 312-335 3-26 (173)
270 1gvn_B Zeta; postsegregational 95.8 0.012 4.1E-07 62.2 6.8 35 661-698 35-69 (287)
271 1w36_D RECD, exodeoxyribonucle 95.8 0.035 1.2E-06 65.1 11.4 27 311-337 164-190 (608)
272 2zr9_A Protein RECA, recombina 95.8 0.015 5E-07 63.3 7.6 83 661-744 63-152 (349)
273 3kl4_A SRP54, signal recogniti 95.7 0.027 9.3E-07 62.8 9.8 40 659-698 97-136 (433)
274 3trf_A Shikimate kinase, SK; a 95.7 0.0053 1.8E-07 60.0 3.6 23 661-683 7-29 (185)
275 3exa_A TRNA delta(2)-isopenten 95.7 0.016 5.6E-07 61.4 7.5 92 313-432 5-102 (322)
276 2zr9_A Protein RECA, recombina 95.7 0.0089 3E-07 65.1 5.6 29 310-338 60-88 (349)
277 2rhm_A Putative kinase; P-loop 95.7 0.0038 1.3E-07 61.3 2.5 25 311-335 5-29 (193)
278 3t61_A Gluconokinase; PSI-biol 95.7 0.0068 2.3E-07 60.3 4.3 25 311-335 18-42 (202)
279 3foz_A TRNA delta(2)-isopenten 95.7 0.017 5.9E-07 61.1 7.5 92 313-432 12-109 (316)
280 3lxw_A GTPase IMAP family memb 95.7 0.021 7.3E-07 58.8 8.1 24 311-334 21-44 (247)
281 2cdn_A Adenylate kinase; phosp 95.7 0.0055 1.9E-07 60.8 3.5 25 311-335 20-44 (201)
282 2dr3_A UPF0273 protein PH0284; 95.7 0.017 5.9E-07 58.9 7.4 36 661-696 25-60 (247)
283 3lw7_A Adenylate kinase relate 95.6 0.0049 1.7E-07 59.2 3.0 22 313-335 3-24 (179)
284 3kl4_A SRP54, signal recogniti 95.6 0.059 2E-06 60.0 12.0 27 312-338 98-124 (433)
285 2p5t_B PEZT; postsegregational 95.6 0.016 5.6E-07 59.9 7.0 36 660-698 33-68 (253)
286 2c95_A Adenylate kinase 1; tra 95.6 0.0052 1.8E-07 60.5 3.0 26 310-335 8-33 (196)
287 2pt7_A CAG-ALFA; ATPase, prote 95.6 0.021 7.3E-07 61.5 8.0 87 662-757 174-263 (330)
288 1nks_A Adenylate kinase; therm 95.6 0.008 2.8E-07 58.8 4.3 25 313-337 3-27 (194)
289 1z6t_A APAF-1, apoptotic prote 95.6 0.015 5.3E-07 67.9 7.3 46 629-681 124-169 (591)
290 1nlf_A Regulatory protein REPA 95.5 0.02 6.9E-07 60.0 7.5 29 310-338 29-57 (279)
291 3dl0_A Adenylate kinase; phosp 95.5 0.0053 1.8E-07 61.7 2.8 23 313-335 2-24 (216)
292 1u94_A RECA protein, recombina 95.5 0.018 6.2E-07 62.7 7.2 84 661-745 65-155 (356)
293 2j9r_A Thymidine kinase; TK1, 95.5 0.0045 1.5E-07 62.0 2.2 24 315-338 32-55 (214)
294 1xp8_A RECA protein, recombina 95.5 0.02 6.9E-07 62.5 7.5 82 662-744 77-165 (366)
295 1pzn_A RAD51, DNA repair and r 95.5 0.018 6.2E-07 62.6 7.1 26 310-335 130-155 (349)
296 1nks_A Adenylate kinase; therm 95.5 0.0072 2.5E-07 59.2 3.6 37 662-698 4-40 (194)
297 1u94_A RECA protein, recombina 95.5 0.019 6.5E-07 62.5 7.1 29 310-338 62-90 (356)
298 3kb2_A SPBC2 prophage-derived 95.5 0.0089 3E-07 57.4 4.0 22 662-683 4-25 (173)
299 3vaa_A Shikimate kinase, SK; s 95.5 0.0078 2.7E-07 59.7 3.7 23 661-683 27-49 (199)
300 1ak2_A Adenylate kinase isoenz 95.5 0.0073 2.5E-07 61.6 3.6 25 311-335 16-40 (233)
301 2ewv_A Twitching motility prot 95.5 0.023 7.9E-07 62.3 7.8 88 660-757 137-233 (372)
302 3cm0_A Adenylate kinase; ATP-b 95.4 0.0063 2.2E-07 59.4 3.0 24 312-335 5-28 (186)
303 3fb4_A Adenylate kinase; psych 95.4 0.0061 2.1E-07 61.2 2.9 23 313-335 2-24 (216)
304 1tev_A UMP-CMP kinase; ploop, 95.4 0.0075 2.6E-07 59.2 3.4 24 312-335 4-27 (196)
305 2cdn_A Adenylate kinase; phosp 95.4 0.0094 3.2E-07 59.2 4.1 23 661-683 22-44 (201)
306 2r6a_A DNAB helicase, replicat 95.4 0.021 7.3E-07 64.5 7.6 28 310-337 202-229 (454)
307 1kht_A Adenylate kinase; phosp 95.4 0.0064 2.2E-07 59.5 2.8 26 312-337 4-29 (192)
308 2pt5_A Shikimate kinase, SK; a 95.4 0.0073 2.5E-07 57.9 3.2 23 313-335 2-24 (168)
309 2iut_A DNA translocase FTSK; n 95.4 0.091 3.1E-06 60.3 12.6 38 660-697 215-256 (574)
310 2i3b_A HCR-ntpase, human cance 95.4 0.012 4.2E-07 58.0 4.7 23 662-684 4-26 (189)
311 1nlf_A Regulatory protein REPA 95.3 0.037 1.3E-06 58.0 8.7 24 661-684 32-55 (279)
312 1m7g_A Adenylylsulfate kinase; 95.3 0.036 1.2E-06 55.4 8.3 30 307-336 21-50 (211)
313 3be4_A Adenylate kinase; malar 95.3 0.007 2.4E-07 61.0 2.9 25 311-335 5-29 (217)
314 4a74_A DNA repair and recombin 95.3 0.018 6E-07 58.1 5.9 23 661-683 27-49 (231)
315 1zd8_A GTP:AMP phosphotransfer 95.3 0.0068 2.3E-07 61.5 2.8 25 311-335 7-31 (227)
316 3dm5_A SRP54, signal recogniti 95.3 0.12 4.2E-06 57.5 13.1 39 660-698 101-139 (443)
317 2cvh_A DNA repair and recombin 95.3 0.015 5.3E-07 58.1 5.4 34 661-697 22-55 (220)
318 1via_A Shikimate kinase; struc 95.3 0.0083 2.8E-07 58.1 3.2 32 662-698 7-38 (175)
319 1zuh_A Shikimate kinase; alpha 95.3 0.0088 3E-07 57.4 3.4 24 660-683 8-31 (168)
320 3tlx_A Adenylate kinase 2; str 95.3 0.014 4.6E-07 60.1 4.9 26 310-335 28-53 (243)
321 2bwj_A Adenylate kinase 5; pho 95.3 0.0076 2.6E-07 59.4 2.9 24 312-335 13-36 (199)
322 4eun_A Thermoresistant glucoki 95.3 0.01 3.5E-07 58.9 3.9 27 309-335 27-53 (200)
323 2p5t_B PEZT; postsegregational 95.3 0.017 5.9E-07 59.7 5.7 24 312-335 33-56 (253)
324 2gxq_A Heat resistant RNA depe 95.3 0.24 8.3E-06 48.7 14.0 25 311-335 38-63 (207)
325 1vma_A Cell division protein F 95.2 0.034 1.2E-06 59.1 8.1 26 312-337 105-130 (306)
326 1zak_A Adenylate kinase; ATP:A 95.2 0.0069 2.4E-07 61.2 2.6 25 311-335 5-29 (222)
327 1kht_A Adenylate kinase; phosp 95.2 0.01 3.5E-07 58.0 3.6 37 661-697 5-41 (192)
328 2ga8_A Hypothetical 39.9 kDa p 95.2 0.0097 3.3E-07 64.3 3.6 41 296-336 5-49 (359)
329 1knq_A Gluconate kinase; ALFA/ 95.2 0.0099 3.4E-07 57.4 3.5 24 312-335 9-32 (175)
330 1ukz_A Uridylate kinase; trans 95.2 0.0086 2.9E-07 59.5 3.0 24 312-335 16-39 (203)
331 2yvu_A Probable adenylyl-sulfa 95.2 0.012 4E-07 57.6 3.9 28 310-337 12-39 (186)
332 1gvn_B Zeta; postsegregational 95.2 0.02 6.8E-07 60.5 5.9 24 312-335 34-57 (287)
333 1qf9_A UMP/CMP kinase, protein 95.1 0.0089 3.1E-07 58.5 3.0 24 312-335 7-30 (194)
334 2iyv_A Shikimate kinase, SK; t 95.1 0.011 3.6E-07 57.8 3.4 32 662-698 5-36 (184)
335 3sr0_A Adenylate kinase; phosp 95.1 0.014 4.7E-07 58.5 4.0 23 313-335 2-24 (206)
336 2orv_A Thymidine kinase; TP4A 95.1 0.1 3.6E-06 52.6 10.4 91 662-757 22-114 (234)
337 2ze6_A Isopentenyl transferase 95.0 0.013 4.4E-07 60.7 4.0 31 662-695 4-34 (253)
338 3iij_A Coilin-interacting nucl 95.0 0.011 3.8E-07 57.4 3.2 23 661-683 13-35 (180)
339 3b6e_A Interferon-induced heli 95.0 0.035 1.2E-06 55.2 7.0 38 295-335 35-72 (216)
340 1ly1_A Polynucleotide kinase; 95.0 0.0096 3.3E-07 57.6 2.7 21 313-333 4-24 (181)
341 2zts_A Putative uncharacterize 95.0 0.033 1.1E-06 56.8 6.9 25 310-334 29-53 (251)
342 1e4v_A Adenylate kinase; trans 95.0 0.0089 3E-07 60.1 2.4 23 313-335 2-24 (214)
343 3nwj_A ATSK2; P loop, shikimat 94.9 0.015 5.2E-07 60.0 4.0 25 311-335 48-72 (250)
344 3d3q_A TRNA delta(2)-isopenten 94.9 0.042 1.4E-06 59.1 7.5 23 313-335 9-31 (340)
345 3bh0_A DNAB-like replicative h 94.9 0.082 2.8E-06 56.5 9.9 29 310-338 67-95 (315)
346 2i1q_A DNA repair and recombin 94.9 0.031 1.1E-06 59.9 6.5 26 310-335 97-122 (322)
347 2qor_A Guanylate kinase; phosp 94.9 0.013 4.4E-07 58.4 3.3 26 310-335 11-36 (204)
348 2pbr_A DTMP kinase, thymidylat 94.9 0.019 6.5E-07 56.2 4.4 25 314-338 3-27 (195)
349 1w4r_A Thymidine kinase; type 94.8 0.019 6.4E-07 56.6 4.2 24 314-337 23-47 (195)
350 1qde_A EIF4A, translation init 94.8 0.37 1.3E-05 48.1 14.2 25 311-335 51-76 (224)
351 3lxx_A GTPase IMAP family memb 94.8 0.074 2.5E-06 54.2 8.9 24 311-334 29-52 (239)
352 2rhm_A Putative kinase; P-loop 94.8 0.014 4.7E-07 57.2 3.3 23 661-683 7-29 (193)
353 1knq_A Gluconate kinase; ALFA/ 94.8 0.024 8.3E-07 54.6 5.0 35 660-699 9-43 (175)
354 2px0_A Flagellar biosynthesis 94.8 0.059 2E-06 57.1 8.4 28 310-337 104-131 (296)
355 1aky_A Adenylate kinase; ATP:A 94.8 0.015 5E-07 58.7 3.5 23 661-683 6-28 (220)
356 2q6t_A DNAB replication FORK h 94.8 0.032 1.1E-06 62.8 6.5 27 311-337 200-226 (444)
357 1zp6_A Hypothetical protein AT 94.8 0.0097 3.3E-07 58.3 2.0 26 310-335 8-33 (191)
358 3eph_A TRNA isopentenyltransfe 94.8 0.04 1.4E-06 60.5 7.0 23 313-335 4-26 (409)
359 1kag_A SKI, shikimate kinase I 94.8 0.014 4.7E-07 56.2 3.0 33 661-698 6-38 (173)
360 1e6c_A Shikimate kinase; phosp 94.8 0.014 4.9E-07 56.1 3.1 22 662-683 5-26 (173)
361 3p32_A Probable GTPase RV1496/ 94.7 0.08 2.7E-06 57.6 9.4 29 310-338 78-106 (355)
362 2xb4_A Adenylate kinase; ATP-b 94.7 0.016 5.4E-07 58.7 3.4 23 313-335 2-24 (223)
363 3sr0_A Adenylate kinase; phosp 94.7 0.015 5.2E-07 58.2 3.2 34 662-700 3-36 (206)
364 1ex7_A Guanylate kinase; subst 94.7 0.015 5.3E-07 57.1 3.1 24 312-335 2-25 (186)
365 3umf_A Adenylate kinase; rossm 94.6 0.015 5.3E-07 58.6 3.2 24 312-335 30-53 (217)
366 1sky_E F1-ATPase, F1-ATP synth 94.6 0.021 7.3E-07 63.9 4.6 27 310-336 150-176 (473)
367 1n0w_A DNA repair protein RAD5 94.6 0.032 1.1E-06 56.7 5.7 37 661-697 26-68 (243)
368 3io5_A Recombination and repai 94.6 0.027 9.2E-07 59.7 5.1 77 313-396 30-125 (333)
369 1y63_A LMAJ004144AAA protein; 94.6 0.016 5.6E-07 56.6 3.3 36 661-700 12-47 (184)
370 3lw7_A Adenylate kinase relate 94.6 0.014 5E-07 55.8 2.8 21 662-683 4-24 (179)
371 3t61_A Gluconokinase; PSI-biol 94.6 0.019 6.6E-07 56.9 3.8 33 661-698 20-52 (202)
372 2pt5_A Shikimate kinase, SK; a 94.6 0.018 6.2E-07 55.0 3.4 22 662-683 3-24 (168)
373 3ly5_A ATP-dependent RNA helic 94.6 0.4 1.4E-05 49.5 13.9 19 312-330 92-110 (262)
374 3cr8_A Sulfate adenylyltranfer 94.5 0.085 2.9E-06 60.8 9.4 59 278-336 333-394 (552)
375 2plr_A DTMP kinase, probable t 94.5 0.015 5.3E-07 57.7 2.9 25 312-336 5-29 (213)
376 3a4m_A L-seryl-tRNA(SEC) kinas 94.5 0.017 5.7E-07 60.1 3.2 38 661-698 6-43 (260)
377 3h1t_A Type I site-specific re 94.5 0.041 1.4E-06 64.3 6.8 23 661-683 200-222 (590)
378 3uie_A Adenylyl-sulfate kinase 94.5 0.019 6.3E-07 57.0 3.3 38 661-698 27-64 (200)
379 2jaq_A Deoxyguanosine kinase; 94.5 0.016 5.5E-07 57.2 2.9 23 313-335 2-24 (205)
380 3fe2_A Probable ATP-dependent 94.5 0.19 6.5E-06 51.1 11.1 19 312-330 67-85 (242)
381 2c95_A Adenylate kinase 1; tra 94.5 0.02 6.9E-07 56.1 3.5 23 661-683 11-33 (196)
382 1tev_A UMP-CMP kinase; ploop, 94.5 0.018 6.3E-07 56.3 3.2 33 661-698 5-37 (196)
383 1kgd_A CASK, peripheral plasma 94.5 0.016 5.6E-07 56.4 2.7 24 312-335 6-29 (180)
384 2pt7_A CAG-ALFA; ATPase, prote 94.4 0.032 1.1E-06 60.1 5.3 27 310-336 170-196 (330)
385 2z0h_A DTMP kinase, thymidylat 94.4 0.021 7.1E-07 56.1 3.5 25 314-338 3-27 (197)
386 3cm0_A Adenylate kinase; ATP-b 94.4 0.017 5.9E-07 56.2 2.8 32 661-697 6-37 (186)
387 1rz3_A Hypothetical protein rb 94.4 0.047 1.6E-06 54.1 6.0 43 295-337 3-48 (201)
388 2pez_A Bifunctional 3'-phospho 94.4 0.026 8.8E-07 54.8 4.0 27 311-337 5-31 (179)
389 3fb4_A Adenylate kinase; psych 94.4 0.021 7.2E-07 57.2 3.4 22 662-683 3-24 (216)
390 2yvu_A Probable adenylyl-sulfa 94.4 0.022 7.5E-07 55.7 3.5 38 661-698 15-52 (186)
391 2j37_W Signal recognition part 94.3 0.074 2.5E-06 60.5 8.2 27 312-338 102-128 (504)
392 3dl0_A Adenylate kinase; phosp 94.3 0.019 6.6E-07 57.5 3.1 32 662-698 3-34 (216)
393 3ice_A Transcription terminati 94.3 0.26 8.8E-06 53.6 11.8 36 302-337 164-200 (422)
394 1cke_A CK, MSSA, protein (cyti 94.3 0.022 7.6E-07 57.4 3.4 24 312-335 6-29 (227)
395 2vli_A Antibiotic resistance p 94.3 0.019 6.4E-07 55.7 2.8 23 661-683 7-29 (183)
396 1nn5_A Similar to deoxythymidy 94.3 0.021 7.3E-07 56.9 3.3 27 311-337 9-35 (215)
397 2if2_A Dephospho-COA kinase; a 94.3 0.018 6.3E-07 57.1 2.7 22 313-335 3-24 (204)
398 3tlx_A Adenylate kinase 2; str 94.3 0.05 1.7E-06 55.8 6.1 33 661-698 31-63 (243)
399 1ly1_A Polynucleotide kinase; 94.3 0.019 6.4E-07 55.5 2.7 32 662-697 5-36 (181)
400 3llm_A ATP-dependent RNA helic 94.2 0.13 4.6E-06 52.1 9.2 23 311-333 76-98 (235)
401 3io5_A Recombination and repai 94.2 0.038 1.3E-06 58.6 5.0 83 661-744 30-124 (333)
402 2bwj_A Adenylate kinase 5; pho 94.2 0.021 7.2E-07 56.2 3.0 32 662-698 15-46 (199)
403 2grj_A Dephospho-COA kinase; T 94.2 0.025 8.4E-07 55.9 3.5 24 312-335 13-36 (192)
404 3c8u_A Fructokinase; YP_612366 94.2 0.022 7.6E-07 56.8 3.2 39 298-336 7-47 (208)
405 3umf_A Adenylate kinase; rossm 94.2 0.022 7.4E-07 57.5 3.1 34 662-700 32-65 (217)
406 1zp6_A Hypothetical protein AT 94.2 0.019 6.4E-07 56.3 2.5 35 661-698 11-45 (191)
407 2pbr_A DTMP kinase, thymidylat 94.2 0.027 9.1E-07 55.1 3.7 33 662-694 3-35 (195)
408 2pez_A Bifunctional 3'-phospho 94.2 0.027 9.2E-07 54.6 3.6 37 661-697 7-43 (179)
409 2wwf_A Thymidilate kinase, put 94.1 0.019 6.4E-07 57.3 2.5 27 311-337 10-36 (212)
410 3tau_A Guanylate kinase, GMP k 94.1 0.018 6.1E-07 57.6 2.3 25 311-335 8-32 (208)
411 2v54_A DTMP kinase, thymidylat 94.1 0.019 6.4E-07 56.8 2.4 25 311-335 4-28 (204)
412 2orv_A Thymidine kinase; TP4A 94.1 0.08 2.7E-06 53.5 6.9 25 314-338 22-46 (234)
413 1vec_A ATP-dependent RNA helic 94.1 0.48 1.6E-05 46.5 12.8 19 311-329 40-58 (206)
414 4eun_A Thermoresistant glucoki 94.1 0.038 1.3E-06 54.7 4.6 33 661-698 31-63 (200)
415 1qf9_A UMP/CMP kinase, protein 94.1 0.024 8.2E-07 55.3 3.1 33 661-698 8-40 (194)
416 3e2i_A Thymidine kinase; Zn-bi 94.1 0.093 3.2E-06 52.4 7.2 94 662-758 31-128 (219)
417 3dkp_A Probable ATP-dependent 94.0 0.61 2.1E-05 47.3 13.8 19 311-329 66-84 (245)
418 1ak2_A Adenylate kinase isoenz 94.0 0.025 8.6E-07 57.6 3.1 33 661-698 18-50 (233)
419 1lvg_A Guanylate kinase, GMP k 94.0 0.027 9.1E-07 55.9 3.2 25 311-335 4-28 (198)
420 3be4_A Adenylate kinase; malar 94.0 0.025 8.5E-07 56.9 3.0 33 661-698 7-39 (217)
421 2bbw_A Adenylate kinase 4, AK4 94.0 0.024 8.1E-07 58.2 2.9 25 311-335 27-51 (246)
422 3zvl_A Bifunctional polynucleo 93.9 0.04 1.4E-06 61.4 4.9 25 311-335 258-282 (416)
423 1ukz_A Uridylate kinase; trans 93.9 0.033 1.1E-06 55.1 3.8 33 661-698 17-49 (203)
424 1zd8_A GTP:AMP phosphotransfer 93.9 0.023 7.8E-07 57.6 2.6 33 661-698 9-41 (227)
425 2bdt_A BH3686; alpha-beta prot 93.9 0.024 8.1E-07 55.5 2.7 23 313-335 4-26 (189)
426 3iuy_A Probable ATP-dependent 93.9 0.17 5.8E-06 50.9 9.2 20 311-330 57-76 (228)
427 3r20_A Cytidylate kinase; stru 93.9 0.029 1E-06 57.1 3.4 25 311-335 9-33 (233)
428 1e4v_A Adenylate kinase; trans 93.9 0.029 9.9E-07 56.2 3.3 22 662-683 3-24 (214)
429 3tr0_A Guanylate kinase, GMP k 93.9 0.025 8.5E-07 56.0 2.7 24 312-335 8-31 (205)
430 2plr_A DTMP kinase, probable t 93.9 0.043 1.5E-06 54.5 4.5 24 661-684 6-29 (213)
431 1zak_A Adenylate kinase; ATP:A 93.9 0.023 7.8E-07 57.3 2.5 33 661-698 7-39 (222)
432 3ake_A Cytidylate kinase; CMP 93.9 0.03 1E-06 55.5 3.3 23 313-335 4-26 (208)
433 1g8f_A Sulfate adenylyltransfe 93.8 0.052 1.8E-06 61.8 5.6 59 278-336 359-420 (511)
434 2j41_A Guanylate kinase; GMP, 93.8 0.022 7.5E-07 56.4 2.3 25 311-335 6-30 (207)
435 1jjv_A Dephospho-COA kinase; P 93.8 0.025 8.6E-07 56.2 2.6 21 313-333 4-24 (206)
436 1kao_A RAP2A; GTP-binding prot 93.7 0.22 7.6E-06 46.5 9.1 23 312-334 4-26 (167)
437 3crm_A TRNA delta(2)-isopenten 93.7 0.03 1E-06 59.8 3.1 32 661-695 7-38 (323)
438 1rz3_A Hypothetical protein rb 93.7 0.078 2.7E-06 52.5 6.0 36 661-696 24-59 (201)
439 3ney_A 55 kDa erythrocyte memb 93.6 0.031 1.1E-06 55.4 3.0 26 310-335 18-43 (197)
440 3a00_A Guanylate kinase, GMP k 93.6 0.032 1.1E-06 54.5 3.1 24 313-336 3-26 (186)
441 1c9k_A COBU, adenosylcobinamid 93.6 0.043 1.5E-06 53.4 3.8 76 662-741 2-83 (180)
442 2pl3_A Probable ATP-dependent 93.6 0.39 1.4E-05 48.4 11.4 20 311-330 62-81 (236)
443 3tui_C Methionine import ATP-b 93.5 0.034 1.2E-06 60.5 3.3 27 309-335 52-78 (366)
444 2z0h_A DTMP kinase, thymidylat 93.5 0.041 1.4E-06 54.0 3.6 32 662-693 3-34 (197)
445 1rif_A DAR protein, DNA helica 93.4 0.38 1.3E-05 50.1 11.2 40 294-336 114-153 (282)
446 2axn_A 6-phosphofructo-2-kinas 93.4 0.11 3.9E-06 59.4 7.6 26 312-337 36-61 (520)
447 2ius_A DNA translocase FTSK; n 93.4 0.3 1E-05 55.5 10.9 38 660-697 168-209 (512)
448 2xb4_A Adenylate kinase; ATP-b 93.3 0.039 1.4E-06 55.7 3.2 22 662-683 3-24 (223)
449 3llm_A ATP-dependent RNA helic 93.3 0.091 3.1E-06 53.4 5.9 19 661-679 78-96 (235)
450 2h92_A Cytidylate kinase; ross 93.3 0.05 1.7E-06 54.5 3.9 24 312-335 4-27 (219)
451 2gks_A Bifunctional SAT/APS ki 93.1 0.25 8.5E-06 56.9 9.9 54 284-337 342-398 (546)
452 4e22_A Cytidylate kinase; P-lo 93.1 0.056 1.9E-06 55.8 4.1 25 311-335 27-51 (252)
453 3foz_A TRNA delta(2)-isopenten 93.1 0.047 1.6E-06 57.7 3.5 31 662-695 13-43 (316)
454 2jaq_A Deoxyguanosine kinase; 93.1 0.042 1.4E-06 54.1 3.0 22 662-683 3-24 (205)
455 2wsm_A Hydrogenase expression/ 93.1 0.038 1.3E-06 55.3 2.8 41 295-335 14-54 (221)
456 2wwf_A Thymidilate kinase, put 93.1 0.054 1.9E-06 53.8 3.9 23 661-683 12-34 (212)
457 2qmh_A HPR kinase/phosphorylas 93.1 0.035 1.2E-06 54.8 2.3 24 312-335 35-58 (205)
458 2v3c_C SRP54, signal recogniti 93.1 0.032 1.1E-06 62.4 2.3 78 308-394 96-192 (432)
459 1j8m_F SRP54, signal recogniti 93.1 0.091 3.1E-06 55.6 5.7 28 311-338 98-125 (297)
460 3nwj_A ATSK2; P loop, shikimat 93.1 0.062 2.1E-06 55.4 4.3 32 662-698 51-82 (250)
461 3lda_A DNA repair protein RAD5 93.1 0.12 3.9E-06 57.2 6.7 37 661-697 180-222 (400)
462 1uj2_A Uridine-cytidine kinase 93.1 0.049 1.7E-06 56.1 3.5 45 312-358 23-67 (252)
463 1vht_A Dephospho-COA kinase; s 93.0 0.047 1.6E-06 54.8 3.2 22 312-333 5-26 (218)
464 3a8t_A Adenylate isopentenyltr 93.0 0.031 1.1E-06 59.9 1.9 32 661-695 42-73 (339)
465 2qor_A Guanylate kinase; phosp 93.0 0.041 1.4E-06 54.7 2.7 22 662-683 15-36 (204)
466 1z6g_A Guanylate kinase; struc 93.0 0.05 1.7E-06 54.8 3.4 26 310-335 22-47 (218)
467 1m7g_A Adenylylsulfate kinase; 92.9 0.045 1.5E-06 54.7 2.9 37 661-697 27-64 (211)
468 1q3t_A Cytidylate kinase; nucl 92.9 0.056 1.9E-06 55.1 3.6 26 310-335 15-40 (236)
469 1zu4_A FTSY; GTPase, signal re 92.9 0.2 6.8E-06 53.6 8.0 39 659-697 105-143 (320)
470 3bgw_A DNAB-like replicative h 92.9 0.089 3E-06 59.1 5.5 28 311-338 197-224 (444)
471 2ga8_A Hypothetical 39.9 kDa p 92.9 0.087 3E-06 56.8 5.2 23 661-683 26-48 (359)
472 1q0u_A Bstdead; DEAD protein, 92.9 0.64 2.2E-05 46.2 11.5 19 312-330 42-60 (219)
473 1x6v_B Bifunctional 3'-phospho 92.8 0.18 6.1E-06 58.7 8.1 28 311-338 52-79 (630)
474 3pey_A ATP-dependent RNA helic 92.8 0.72 2.5E-05 50.0 12.8 24 309-332 42-65 (395)
475 1htw_A HI0065; nucleotide-bind 92.8 0.05 1.7E-06 51.9 2.9 27 309-335 31-57 (158)
476 2oxc_A Probable ATP-dependent 92.8 0.41 1.4E-05 48.2 10.0 25 311-335 61-86 (230)
477 3e2i_A Thymidine kinase; Zn-bi 92.8 0.066 2.3E-06 53.5 3.8 41 382-436 101-141 (219)
478 4b3f_X DNA-binding protein smu 92.8 0.21 7.2E-06 59.0 8.8 41 295-337 191-231 (646)
479 1bif_A 6-phosphofructo-2-kinas 92.8 0.15 5E-06 57.8 7.2 28 310-337 38-65 (469)
480 3pqc_A Probable GTP-binding pr 92.7 0.14 4.8E-06 49.5 6.2 25 310-334 22-46 (195)
481 3fmo_B ATP-dependent RNA helic 92.7 0.46 1.6E-05 50.2 10.6 29 307-335 127-156 (300)
482 1nn5_A Similar to deoxythymidy 92.7 0.059 2E-06 53.6 3.4 23 661-683 11-33 (215)
483 1znw_A Guanylate kinase, GMP k 92.7 0.049 1.7E-06 54.2 2.8 26 310-335 19-44 (207)
484 3tqc_A Pantothenate kinase; bi 92.7 0.19 6.4E-06 53.7 7.4 24 661-684 94-117 (321)
485 2if2_A Dephospho-COA kinase; a 92.7 0.048 1.7E-06 53.9 2.7 31 662-698 4-34 (204)
486 3vkw_A Replicase large subunit 92.6 0.15 5.2E-06 56.6 6.8 89 662-757 164-260 (446)
487 1ex7_A Guanylate kinase; subst 92.6 0.063 2.2E-06 52.6 3.4 22 662-683 4-25 (186)
488 2yhs_A FTSY, cell division pro 92.6 0.5 1.7E-05 53.2 11.0 141 269-420 241-402 (503)
489 1zd9_A ADP-ribosylation factor 92.6 0.14 4.7E-06 49.7 5.8 23 312-334 23-45 (188)
490 1kgd_A CASK, peripheral plasma 92.5 0.052 1.8E-06 52.7 2.7 22 662-683 8-29 (180)
491 3e70_C DPA, signal recognition 92.5 0.23 7.8E-06 53.3 7.9 34 660-693 130-163 (328)
492 1hv8_A Putative ATP-dependent 92.5 0.83 2.8E-05 48.9 12.7 25 311-335 44-68 (367)
493 1gtv_A TMK, thymidylate kinase 92.5 0.027 9.1E-07 56.2 0.6 24 314-337 3-26 (214)
494 1m8p_A Sulfate adenylyltransfe 92.5 0.2 6.7E-06 58.1 7.8 26 312-337 397-422 (573)
495 2hf9_A Probable hydrogenase ni 92.5 0.071 2.4E-06 53.5 3.7 37 300-336 27-63 (226)
496 1s96_A Guanylate kinase, GMP k 92.4 0.056 1.9E-06 54.6 2.8 26 311-336 16-41 (219)
497 1cke_A CK, MSSA, protein (cyti 92.4 0.059 2E-06 54.2 3.0 34 661-699 7-40 (227)
498 3bor_A Human initiation factor 92.4 0.37 1.3E-05 48.8 9.1 20 311-330 67-86 (237)
499 1svi_A GTP-binding protein YSX 92.4 0.14 5E-06 49.6 5.8 25 310-334 22-46 (195)
500 1ls1_A Signal recognition part 92.4 0.14 4.9E-06 54.0 6.1 27 312-338 99-125 (295)
No 1
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=100.00 E-value=1.3e-84 Score=794.47 Aligned_cols=659 Identities=41% Similarity=0.670 Sum_probs=566.9
Q ss_pred hhHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhcCCChHHHHHHCCCCHHHHHHHHHHHhhh-CCCCCCcchhccCCCC
Q 003088 85 FTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAVVSIWHS-TNNQDTDDAAAQGKPF 163 (849)
Q Consensus 85 ft~~a~~~l~~A~~~A~~~~~~~v~~eHLLlaLl~~~~~~~~l~~~gi~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 163 (849)
||++|+++|..|+.+|+++||.+|+|||||+|||.++++.++|..+|++++.++.++...+++ .|. ..
T Consensus 2 ~t~~a~~~l~~A~~~A~~~~h~~i~~eHLLlaLl~~~~~~~iL~~~gvd~~~l~~~l~~~l~~~~p~-----------~~ 70 (758)
T 1r6b_X 2 LNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPV-----------LP 70 (758)
T ss_dssp BCHHHHHHHHHHHHHHHHTTBSEECHHHHHHHHTTSHHHHHHHHHTTCCHHHHHHHHHHHHHHHSCB-----------CC
T ss_pred CCHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHhccCCC-----------CC
Confidence 999999999999999999999999999999999987668899999999999999999999987 432 11
Q ss_pred C--CCCCCCCCHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHhhhcCCchhhHHHHhhcCCHHHHHHHHHHhhhhcccccC
Q 003088 164 S--SAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEG 241 (849)
Q Consensus 164 ~--~~~~~~~s~~~~~vl~~A~~~a~~~g~~~I~~ehlLlall~~~~~~a~~iL~~~gv~~~~l~~~~~~~~~~~~~~~~ 241 (849)
+ ....++||+.++++|+.|..+|+.+|++||+++|||+||++++++.+.++|+++|++.+++.+.+.+.....-...
T Consensus 71 ~~~~~~~~~~s~~~~~vl~~A~~~a~~~~~~~I~~ehlLlall~~~~~~a~~~L~~~gi~~~~l~~~i~~~~~~~~~~~- 149 (758)
T 1r6b_X 71 ASEEERDTQPTLSFQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGTRKDEPTQ- 149 (758)
T ss_dssp CSSSCCCCEECHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHTTCTTCHHHHHHHHTTCCHHHHHHHHHTC---------
T ss_pred CccccCCCCcCHHHHHHHHHHHHHHHHcCCCEeeHHHHHHHHhccccchHHHHHHHcCCCHHHHHHHHHHhhccccccc-
Confidence 1 2356899999999999999999999999999999999999998888999999999999998876643321100000
Q ss_pred CCCccccccccccccccccccCCCCCCcchhHHhhhhhhHHHHhhcCCCCccccHHHHHHHHHHHhcCCCCCCeEeCCCC
Q 003088 242 REPSLAKGVRENSISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESG 321 (849)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~l~~iiG~~~~i~~l~~~l~~~~~~niLL~GppG 321 (849)
.+. .+... +++ +.......|++|+.+|++++++++|+++||++++++++.+++.++.++|+||+||||
T Consensus 150 ~~~---~~~~~---~~~------~~~~~~~~l~~~~~~l~~~~~~~~~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~G 217 (758)
T 1r6b_X 150 SSD---PGSQP---NSE------EQAGGEERLENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESG 217 (758)
T ss_dssp -------------------------------CCSSSCBHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTT
T ss_pred ccc---ccccc---ccc------ccccchhHHHHHhHhHHHHHhcCCCCCccCCHHHHHHHHHHHhccCCCCeEEEcCCC
Confidence 000 00000 000 000134679999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCC
Q 003088 322 VGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVG 401 (849)
Q Consensus 322 tGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~ 401 (849)
||||++|+++++.+..+.+|..+.+++++.++++.+..+.+++|+++.+++.+++.+...+++||||||+|.+++.+...
T Consensus 218 tGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~ 297 (758)
T 1r6b_X 218 VGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAAS 297 (758)
T ss_dssp SSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSS
T ss_pred CCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCC
Confidence 99999999999999999999999999999999999998888999999999999999988778999999999998766542
Q ss_pred CCCCCccHHHHHHHhhhhcCCCeEEEEccChHHHHHHhhccHHHHhccccEEecCCCHHHHHHHHHHHHHHHHhhcCCcc
Q 003088 402 RGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKF 481 (849)
Q Consensus 402 ~~~~~~~~~~~~~L~~~le~~~i~vI~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i 481 (849)
++..++.+.|+++++++.+++|++||..+|.+++.+|++|.+||+.+.|++|+.+++.+||+.+...|+.++++.+
T Consensus 298 ----~~~~~~~~~L~~~l~~~~~~~I~at~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~ 373 (758)
T 1r6b_X 298 ----GGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRY 373 (758)
T ss_dssp ----SCHHHHHHHHSSCSSSCCCEEEEEECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred ----cchHHHHHHHHHHHhCCCeEEEEEeCchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 2477889999999999999999999999999999999999999999999999999999999999999988999999
Q ss_pred CHHHHHHHHHhhhcccccCcchhhHHHHHHHHhhHHHHhhhhchhhhhhhhcCCCCchHHHHHHHHHHhHHHHHhccccc
Q 003088 482 TLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLKY 561 (849)
Q Consensus 482 ~~~~l~~~a~ls~~~~~~r~~p~~ai~ll~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (849)
+++++..++.++.+|+.++++|+++++++++|+...++....
T Consensus 374 ~~~al~~~~~~s~~~i~~~~lp~~~i~lld~a~~~~~~~~~~-------------------------------------- 415 (758)
T 1r6b_X 374 TAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVS-------------------------------------- 415 (758)
T ss_dssp CHHHHHHHHHHHHHHCTTSCTTHHHHHHHHHHHHHHHHSSSC--------------------------------------
T ss_pred CHHHHHHHHHHhhhhcccccCchHHHHHHHHHHHHHhccccc--------------------------------------
Confidence 999999999999999999999999999999998766532100
Q ss_pred chhhhccCCcchhHHhccCCCCCCCCCCCccCHhHHHHHHHhHhCCCcccCCHHHHHHHHHHHHHHhccccccHHHHHHH
Q 003088 562 DDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAI 641 (849)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~i~Gq~~~i~~l 641 (849)
.....|+.+++..+++.|+++|...+.+++...+..+++.+.+.++||+++++.+
T Consensus 416 -------------------------~~~~~v~~~di~~~~~~~~~ip~~~~~~~~~~~l~~l~~~l~~~v~g~~~~~~~l 470 (758)
T 1r6b_X 416 -------------------------KRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEAL 470 (758)
T ss_dssp -------------------------CCCCSCCHHHHHHHHHHHSCCCCCCSSSSHHHHHHHHHHHHTTTSCSCHHHHHHH
T ss_pred -------------------------ccCCccCHHHHHHHHHHhcCCCccccchhHHHHHHHHHHHHHhhccCHHHHHHHH
Confidence 0124689999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccccccCCCCCccccccCc
Q 003088 642 SRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGG 721 (849)
Q Consensus 642 ~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~vg~~~~~ 721 (849)
..++...+.|+..|.+|.+++||+||||||||++|+++|+.+ +.+|+.++|+++.+.+.++.++|.++||+|+.+++
T Consensus 471 ~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l---~~~~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~~ 547 (758)
T 1r6b_X 471 TEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL---GIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGG 547 (758)
T ss_dssp HHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH---TCEEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHTT
T ss_pred HHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh---cCCEEEEechhhcchhhHhhhcCCCCCCcCccccc
Confidence 999999999999999999999999999999999999999998 57899999999999999999999999999999989
Q ss_pred chhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCchhhhcccCCccccccccC
Q 003088 722 LLTEAIRRRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDN 801 (849)
Q Consensus 722 ~l~~~i~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~ 801 (849)
.+.++++.++++||||||||++++++++.|+++||+|.+++..|+.+++.+++||+|||.+...+.+ +.+||....
T Consensus 548 ~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~~~~~~~~---~~~g~~~~~- 623 (758)
T 1r6b_X 548 LLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETER---KSIGLIHQD- 623 (758)
T ss_dssp HHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECSSCC-----------------
T ss_pred hHHHHHHhCCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCcchhhhhh---cccCccccc-
Confidence 9999999999999999999999999999999999999999999999999999999999998876654 357776422
Q ss_pred CcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHHHccccC
Q 003088 802 ESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQLPL 848 (849)
Q Consensus 802 ~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~I~~ 848 (849)
...++...+++.|+|+|++|||.+|.|+||+.+++..|++
T Consensus 624 -------~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~ 663 (758)
T 1r6b_X 624 -------NSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVD 663 (758)
T ss_dssp -----------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHH
T ss_pred -------hHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHH
Confidence 1245566777889999999999999999999999988864
No 2
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=100.00 E-value=3.6e-85 Score=797.92 Aligned_cols=667 Identities=48% Similarity=0.769 Sum_probs=529.9
Q ss_pred chHHHhhHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhcCCC--hHHHHHHCCCCHHHHHHHHHHHhhhCCCCCCcchh
Q 003088 80 SVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDR--HPNGFLESGITIDKAREAVVSIWHSTNNQDTDDAA 157 (849)
Q Consensus 80 ~~ferft~~a~~~l~~A~~~A~~~~~~~v~~eHLLlaLl~~~~--~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (849)
|||+|||++|+++|..|+++|+++||++|+|||||+|||.+++ +.++|..+|+|++.++.++...+++.+.
T Consensus 1 mm~~~~t~~a~~~l~~A~~~A~~~~h~~i~~eHlLlaLl~~~~~~~~~iL~~~gvd~~~l~~~l~~~l~~~~~------- 73 (758)
T 3pxi_A 1 MMFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEVESLIGRGQE------- 73 (758)
T ss_dssp --CCCBCHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSCCSHHHHHHHHHTCCHHHHHHHHHTTSCCCCT-------
T ss_pred CchhhhCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhccCcHHHHHHHHcCCCHHHHHHHHHHHhccCCC-------
Confidence 4999999999999999999999999999999999999998866 6889999999999999999888776542
Q ss_pred ccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHhhhcCCchhhHHHHhhcCCHHHHHHHHHHhhhhcc
Q 003088 158 AQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGEL 237 (849)
Q Consensus 158 ~~~~~~~~~~~~~~s~~~~~vl~~A~~~a~~~g~~~I~~ehlLlall~~~~~~a~~iL~~~gv~~~~l~~~~~~~~~~~~ 237 (849)
..+.++||+.+++||+.|..+|+++|++||++||||+||++++++.++++|+++|++.+++++.+.+...+..
T Consensus 74 -------~~~~~~~s~~~~~vl~~A~~~A~~~~~~~I~~ehlLlall~~~~~~a~~~L~~~gv~~~~l~~~i~~~~~~~~ 146 (758)
T 3pxi_A 74 -------MSQTIHYTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNE 146 (758)
T ss_dssp -------TCSSCEECHHHHHHHHHHHHHHHTTTCSSBCHHHHHHHHHHTCCSHHHHHHHHTTCCHHHHHHHHHTTCCCCC
T ss_pred -------CCCCCCCCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhcCCcHHHHHHHHcCCCHHHHHHHHHHHhcCCc
Confidence 1246899999999999999999999999999999999999999999999999999999999988876543210
Q ss_pred cccCCCCccccccccccccccccccCCCCCCcchhHHhhhhhhHHHHhhcCCCCccccHHHHHHHHHHHhcCCCCCCeEe
Q 003088 238 AKEGREPSLAKGVRENSISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317 (849)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~l~~iiG~~~~i~~l~~~l~~~~~~niLL~ 317 (849)
.. . . . .+ .......+.|++|+.+|++++++++++++||++++++++.+++.++.++|+||+
T Consensus 147 ~~-----~----~---~-~~------~~~~~~~~~l~~~~~~l~~~~~~~~ld~iiG~~~~i~~l~~~l~~~~~~~vLL~ 207 (758)
T 3pxi_A 147 TG-----S----S---A-AG------TNSNANTPTLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLI 207 (758)
T ss_dssp TT-----C-------------------CCSTHHHHHHSSCCBHHHHTTSSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEE
T ss_pred cc-----c----c---c-cc------cccchhhhHHHHHHHHHHHHHhhCCCCCccCchHHHHHHHHHHhCCCCCCeEEE
Confidence 00 0 0 0 00 011124578999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhC
Q 003088 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGS 397 (849)
Q Consensus 318 GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~ 397 (849)
||||||||++|+++|+.+..+++|..+.+++++.+++ +.+++|+++.+++.+++.+...+++|||||
T Consensus 208 G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~-----g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD-------- 274 (758)
T 3pxi_A 208 GEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM-----GTKYRGEFEDRLKKVMDEIRQAGNIILFID-------- 274 (758)
T ss_dssp SCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------------CTTHHHHHHHHHTCCCCEEEEC--------
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc-----cccccchHHHHHHHHHHHHHhcCCEEEEEc--------
Confidence 9999999999999999999999999999999999988 677899999999999999998889999999
Q ss_pred CCCCCCCCCccHHHHHHHhhhhcCCCeEEEEccChHHHHHHhhccHHHHhccccEEecCCCHHHHHHHHHHHHHHHHhhc
Q 003088 398 GTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHH 477 (849)
Q Consensus 398 ~~~~~~~~~~~~~~~~~L~~~le~~~i~vI~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL~~~~~~~~~~~ 477 (849)
+ ..++++.|++.++++.+++|++||..+|++++.++++|++||+.|.|++|+.+++.+||+.+..+|+.++
T Consensus 275 ~---------~~~~~~~L~~~l~~~~v~~I~at~~~~~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~~~~~~ 345 (758)
T 3pxi_A 275 A---------AIDASNILKPSLARGELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDRYEAHH 345 (758)
T ss_dssp C-----------------CCCTTSSSCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTTTSGGGS
T ss_pred C---------chhHHHHHHHHHhcCCEEEEeCCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHhc
Confidence 1 3467889999999999999999999999999999999999999999999999999999999999888889
Q ss_pred CCccCHHHHHHHHHhhhcccccCcchhhHHHHHHHHhhHHHHhhhhchhhhhhhhcCCCCchHHHHHHHHHHhHHHHHhc
Q 003088 478 NCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGS 557 (849)
Q Consensus 478 ~~~i~~~~l~~~a~ls~~~~~~r~~p~~ai~ll~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 557 (849)
++.++++++..++.++.+|+.++++|+++++++++|++.+++.....+.. .+++...+..+....+.....
T Consensus 346 ~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~ll~~a~~~~~~~~~~~p~~---------~~~l~~~~~~~~~~~~~~~~~ 416 (758)
T 3pxi_A 346 RVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKVRLRSFTTPPN---------LKELEQKLDEVRKEKDAAVQS 416 (758)
T ss_dssp SCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHHHHHHTTC--CC---------THHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhhcccccCcCCcHHHHHHHHHHHHHHhhccCCCcc---------hhhHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999988776554431 123333333333332222222
Q ss_pred ccccchhhhccCCc---chhHHhccCCCCCCCCCCCccCHhHHHHHHHhHhCCCcccCCHHHHHHHHHHHHHHhcccccc
Q 003088 558 RLKYDDVVASMGDT---SEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQ 634 (849)
Q Consensus 558 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~i~Gq 634 (849)
..++....+..... .........|..........++.+++..+++.|+|+|...+...+...+..++..+.+.++||
T Consensus 417 ~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~i~~~v~~~~~ip~~~~~~~~~~~l~~l~~~l~~~viGq 496 (758)
T 3pxi_A 417 QEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQENSEVTVDDIAMVVSSWTGVPVSKIAQTETDKLLNMENILHSRVIGQ 496 (758)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHSGGGHHHHCC---CCTHHHHHHHHTTC-------CHHHHSCC-CHHHHHHTTSCSC
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcccCHHHHHHHHHHHhCCChHHhhHHHHHHHHHHHHHHhCcCcCh
Confidence 22222111111000 000001111111111234678899999999999999999999999888999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccccccCCCCCc
Q 003088 635 DEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGY 714 (849)
Q Consensus 635 ~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~ 714 (849)
+.+++.+..++...+.|...|.+|.+++||+||||||||++|+++|+.+++.+.+|+.+||+++.+.+..+
T Consensus 497 ~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~--------- 567 (758)
T 3pxi_A 497 DEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTS--------- 567 (758)
T ss_dssp HHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC---------
T ss_pred HHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccc---------
Confidence 99999999999999999999999998999999999999999999999999989999999999998754332
Q ss_pred cccccCcchhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCchhhhcccCCcc
Q 003088 715 VGYEEGGLLTEAIRRRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKGRHGSI 794 (849)
Q Consensus 715 vg~~~~~~l~~~i~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~~~~~~~~ 794 (849)
++.++++++..+++||||||||++++++++.|+++|++|.+++.+|+.+++.+++||+|||.+...
T Consensus 568 -----~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~--------- 633 (758)
T 3pxi_A 568 -----GGQLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASE--------- 633 (758)
T ss_dssp --------CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTC---------
T ss_pred -----cchhhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhh---------
Confidence 357888999999999999999999999999999999999999999999999999999999986531
Q ss_pred ccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHHHccccC
Q 003088 795 GFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQLPL 848 (849)
Q Consensus 795 gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~I~~ 848 (849)
...+...+++.|+|+|++|||.+|.|+||+.+++.+|++
T Consensus 634 ---------------~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~ 672 (758)
T 3pxi_A 634 ---------------KDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVS 672 (758)
T ss_dssp ---------------CHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHH
T ss_pred ---------------HHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHH
Confidence 123445566779999999999999999999999998864
No 3
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=100.00 E-value=1.8e-83 Score=790.84 Aligned_cols=709 Identities=45% Similarity=0.694 Sum_probs=547.5
Q ss_pred chHHHhhHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhcCCC--hHHHHHHCCCCHHHHHHHHHHHhhhCCCCCCcchh
Q 003088 80 SVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDR--HPNGFLESGITIDKAREAVVSIWHSTNNQDTDDAA 157 (849)
Q Consensus 80 ~~ferft~~a~~~l~~A~~~A~~~~~~~v~~eHLLlaLl~~~~--~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (849)
|||++||++|+++|..|+.+|+++||.+|+|||||+|||.+++ +.++|..+|++++.++.++...+++.|.
T Consensus 1 ~~~~~~t~~a~~al~~A~~~A~~~~h~~i~~eHLLlaLl~~~~~~~~~iL~~~gvd~~~l~~~l~~~l~~~p~------- 73 (854)
T 1qvr_A 1 MNLERWTQAAREALAQAQVLAQRMKHQAIDLPHLWAVLLKDERSLAWRLLEKAGADPKALKELQERELARLPK------- 73 (854)
T ss_dssp ---CCSCHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHCCSSSSHHHHHHHTTSSCHHHHHHHHHHHHHTSCC-------
T ss_pred CChhhhCHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCCcHHHHHHHHcCCCHHHHHHHHHHHHhhCCC-------
Confidence 5899999999999999999999999999999999999999877 5889999999999999999999988764
Q ss_pred ccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHhhhcCCchhhHHHHhhcCCHHHHHHHHHHhhhhcc
Q 003088 158 AQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGEL 237 (849)
Q Consensus 158 ~~~~~~~~~~~~~~s~~~~~vl~~A~~~a~~~g~~~I~~ehlLlall~~~~~~a~~iL~~~gv~~~~l~~~~~~~~~~~~ 237 (849)
..+.+..++||+.++++|+.|..+|+.+|+.||+++|||+||+.++++ + ++...++..+.+.. +.
T Consensus 74 ----~~~~~~~~~~S~~~~~vL~~A~~~a~~~g~~~I~~ehlLlall~~~~~-~--------~~~~~~~~~~~~~~-~~- 138 (854)
T 1qvr_A 74 ----VEGAEVGQYLTSRLSGALNRAEGLMEELKDRYVAVDTLVLALAEATPG-L--------PGLEALKGALKELR-GG- 138 (854)
T ss_dssp ----CCGGGTTCEECHHHHHHHHHHHHHHHTTTCSSCCHHHHHHHHHHHSTT-S--------CCHHHHHHHHTSSC-SC-
T ss_pred ----CCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcEeeHHHHHHHHHhcccc-c--------CCHHHHHHHHHHhc-cc-
Confidence 122235689999999999999999999999999999999999987654 2 88888876553221 00
Q ss_pred cccCCCCccccccccccccccccccCCCCCCcchhHHhhhhhhHHHHhhcCCCCccccHHHHHHHHHHHhcCCCCCCeEe
Q 003088 238 AKEGREPSLAKGVRENSISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317 (849)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~l~~iiG~~~~i~~l~~~l~~~~~~niLL~ 317 (849)
. . ..+. .+ ......|++|+.+|++++++++|+++||++++++++.+++.++.++|++|+
T Consensus 139 ----~-----~------~~~~-----~~-~~~~~~l~~~~~~l~~~~r~~~ld~viGr~~~i~~l~~~l~~~~~~~vlL~ 197 (854)
T 1qvr_A 139 ----R-----T------VQTE-----HA-ESTYNALEQYGIDLTRLAAEGKLDPVIGRDEEIRRVIQILLRRTKNNPVLI 197 (854)
T ss_dssp ----C-----S------SCSS-----CC-CCCCSHHHHHEEEHHHHHHTTCSCCCCSCHHHHHHHHHHHHCSSCCCCEEE
T ss_pred ----c-----c------cccc-----cc-cccchhHHHHHHhHHHHHhcCCCcccCCcHHHHHHHHHHHhcCCCCceEEE
Confidence 0 0 0000 00 113467999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhccccccchHHHHHHHHHHHHHhc-CCeEEEEcCcchhhh
Q 003088 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKS-GDVILFIDEVHTLIG 396 (849)
Q Consensus 318 GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~~~~~~g~~e~~l~~l~~~~~~~-~~~ILfIDEi~~l~~ 396 (849)
||||||||++|+++|+.+..+.+|..+.+.+++.++++.+..+.+++|+++.+++.+++.+... +++||||||+|.+.+
T Consensus 198 G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~ 277 (854)
T 1qvr_A 198 GEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVG 277 (854)
T ss_dssp ECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC-----
T ss_pred cCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhc
Confidence 9999999999999999999999998888999999999999988899999999999999999875 689999999999987
Q ss_pred CCCCCCCCCCccHHHHHHHhhhhcCCCeEEEEccChHHHHHHhhccHHHHhccccEEecCCCHHHHHHHHHHHHHHHHhh
Q 003088 397 SGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAH 476 (849)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~L~~~le~~~i~vI~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL~~~~~~~~~~ 476 (849)
.+.. .+..++.+.|+++++++.+++|++||..+|++ +.++++|.+||+.|.|++|+.+++.+||+.++.+|+.+
T Consensus 278 ~~~~-----~g~~~~~~~L~~~l~~~~i~~I~at~~~~~~~-~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~~~~~~~ 351 (854)
T 1qvr_A 278 AGKA-----EGAVDAGNMLKPALARGELRLIGATTLDEYRE-IEKDPALERRFQPVYVDEPTVEETISILRGLKEKYEVH 351 (854)
T ss_dssp -------------------HHHHHTTCCCEEEEECHHHHHH-HTTCTTTCSCCCCEEECCCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCc-----cchHHHHHHHHHHHhCCCeEEEEecCchHHhh-hccCHHHHhCCceEEeCCCCHHHHHHHHHhhhhhhhhh
Confidence 6543 34577889999999999999999999999888 88999999999999999999999999999999999999
Q ss_pred cCCccCHHHHHHHHHhhhcccccCcchhhHHHHHHHHhhHHHHhhhhchhhhhh------------hhcCCCCc------
Q 003088 477 HNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQT------------CILSKPPD------ 538 (849)
Q Consensus 477 ~~~~i~~~~l~~~a~ls~~~~~~r~~p~~ai~ll~~a~~~~~~~~~~~~~~~~~------------~~l~~~~~------ 538 (849)
+++.++++++..++.++.+|+.++++|+++++++++|++..++.....|.+... ..+.++.+
T Consensus 352 ~~~~i~~~al~~~~~ls~r~i~~~~lp~kai~lldea~a~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (854)
T 1qvr_A 352 HGVRISDSAIIAAATLSHRYITERRLPDKAIDLIDEAAARLRMALESAPEEIDALERKKLQLEIEREALKKEKDPDSQER 431 (854)
T ss_dssp TTCEECHHHHHHHHHHHHHHCCSSCTHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHSSCSSHHHHSC
T ss_pred cCCCCCHHHHHHHHHHHhhhcccccChHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhccccccHHH
Confidence 999999999999999999999999999999999999999998876655543211 12222221
Q ss_pred --h-----------------HHHHHHH----HHHhH----------HHHHhcccccchhhhccCCcc----hhHHhccCC
Q 003088 539 --D-----------------YWQEIRT----VQAMH----------EVVQGSRLKYDDVVASMGDTS----EIVVESSLP 581 (849)
Q Consensus 539 --~-----------------~~~~~~~----~~~~~----------~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 581 (849)
. .|+..+. +.... +.+.....+.....+.+.... .+......
T Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 510 (854)
T 1qvr_A 432 LKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRREIELAERQYDLNRAAELRYGELPKLEAEVEALSEK- 510 (854)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHTTHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcccHHHHHHHhhhhhHHHHHHHHHHHhh-
Confidence 1 1111110 00000 000000001111111110000 00000000
Q ss_pred CCCCCCCCCccCHhHHHHHHHhHhCCCcccCCHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHhhcCCCCCCCCCcc
Q 003088 582 SASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAA 661 (849)
Q Consensus 582 ~~~~~~~~~~v~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~ 661 (849)
..........++.+++..+++.|+|+|...+...+...+..++..+.+.++||+++++.+...+...+.|+..|.+|.++
T Consensus 511 ~~~~~~~~~~v~~~~l~~~v~~~~~ip~~~~~~~~~~~l~~l~~~l~~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~ 590 (854)
T 1qvr_A 511 LRGARFVRLEVTEEDIAEIVSRWTGIPVSKLLEGEREKLLRLEEELHKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGS 590 (854)
T ss_dssp SSSCSSCCSEECHHHHHHHHHTTSSCHHHHTTCCHHHHHHSHHHHHHHHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEE
T ss_pred hcccccccCCcCHHHHHHHHHHHhCCChHhhcHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHhcccCCCCCCceE
Confidence 11123345679999999999999999998888788888888888899999999999999999999999999999999989
Q ss_pred ceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccccccCCCCCccccccCcchhHHHHhCCCeEEEEeCcc
Q 003088 662 MLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRRRPFTLLLLDEIE 741 (849)
Q Consensus 662 lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~i~~~~~~vl~lDEid 741 (849)
+||+||||||||++|++||+.+++.+.+|+.++|+++.+.+..+.++|.+++|+|+.+++.++++++.++++|||||||+
T Consensus 591 vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~~~g~l~~~~~~~~~~vl~lDEi~ 670 (854)
T 1qvr_A 591 FLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIE 670 (854)
T ss_dssp EEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC--------------CHHHHHHHCSSEEEEESSGG
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHHHHcCCCCCCcCccccchHHHHHHhCCCeEEEEeccc
Confidence 99999999999999999999998888999999999999999999999999999999988899999999999999999999
Q ss_pred ccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhC
Q 003088 742 KAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYF 821 (849)
Q Consensus 742 ~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~ 821 (849)
++++++++.|+++|++|.+++..|+.+++.+++||+|||.++..+.... ++ ...+..+...++..++..|
T Consensus 671 ~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~~~~~~~~~~----~~------~~~~~~l~~~v~~~~~~~f 740 (854)
T 1qvr_A 671 KAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGL----QK------GWPYERIRDEVFKVLQQHF 740 (854)
T ss_dssp GSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCTTHHHHHHHH----HT------TCCHHHHHHHHHHHHHTTS
T ss_pred ccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEecCcChHHHhhhc----cc------ccchHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999877664310 10 0123456777777788999
Q ss_pred ChHHhhccccEEEcCCCCHHHHccccC
Q 003088 822 RPELLNRIDEVVVFRSLEKAQVCQLPL 848 (849)
Q Consensus 822 ~pell~R~d~~i~f~pl~~~~~~~I~~ 848 (849)
+|+|++|||.++.|.||+.+++..|++
T Consensus 741 ~~~l~~Rl~~~i~~~pl~~edi~~i~~ 767 (854)
T 1qvr_A 741 RPEFLNRLDEIVVFRPLTKEQIRQIVE 767 (854)
T ss_dssp CHHHHHTCSBCCBCCCCCHHHHHHHHH
T ss_pred CHHHHHhcCeEEeCCCCCHHHHHHHHH
Confidence 999999999999999999999988864
No 4
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=100.00 E-value=7.3e-60 Score=542.27 Aligned_cols=463 Identities=42% Similarity=0.667 Sum_probs=368.6
Q ss_pred chHHHhhHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhcCCC--hHHHHHHCCCCHHHHHHHHHHHhhhCCCCCCcchh
Q 003088 80 SVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDR--HPNGFLESGITIDKAREAVVSIWHSTNNQDTDDAA 157 (849)
Q Consensus 80 ~~ferft~~a~~~l~~A~~~A~~~~~~~v~~eHLLlaLl~~~~--~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (849)
|||++||++|+++|..|+++|+++||++|+|||||+|||.+++ +.++|..+|+|++.++.++...+++.+.
T Consensus 1 mm~~~ft~~a~~al~~A~~~A~~~~h~~v~~eHLLlaLl~~~~~~~~~iL~~~gvd~~~l~~~l~~~l~~~~~------- 73 (468)
T 3pxg_A 1 MMFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEVESLIGRGQE------- 73 (468)
T ss_dssp --CCCBCHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSCCSHHHHHHHHHTCCHHHHHHHHHTTSCCCCT-------
T ss_pred CcchhhCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhccCcHHHHHHHHcCCCHHHHHHHHHHHhcccCC-------
Confidence 4999999999999999999999999999999999999999876 6889999999999999999887766542
Q ss_pred ccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHhhhcCCchhhHHHHhhcCCHHHHHHHHHHhhhhcc
Q 003088 158 AQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGEL 237 (849)
Q Consensus 158 ~~~~~~~~~~~~~~s~~~~~vl~~A~~~a~~~g~~~I~~ehlLlall~~~~~~a~~iL~~~gv~~~~l~~~~~~~~~~~~ 237 (849)
....++||+.++++|+.|..+|+++|++||+++|||+||++++++.++++|+++|++.++++..+.+.+.+..
T Consensus 74 -------~~~~~~~S~~~~~vL~~A~~~A~~~g~~~I~teHLLlaLl~~~~~~a~~iL~~~gv~~~~l~~~i~~~~~~~~ 146 (468)
T 3pxg_A 74 -------MSQTIHYTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNE 146 (468)
T ss_dssp -------TCSSCEECHHHHHHHHHHHHHHHTTTCSSBCHHHHHHHHHHTCCSHHHHHHHHTTCCHHHHHHHHHTTCCCCC
T ss_pred -------CCCCCCCCHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHhcccchHHHHHHHcCCCHHHHHHHHHHHhccCc
Confidence 1234889999999999999999999999999999999999999999999999999999999988776542210
Q ss_pred cccCCCCccccccccccccccccccCCCCCCcchhHHhhhhhhHHHHhhcCCCCccccHHHHHHHHHHHhcCCCCCCeEe
Q 003088 238 AKEGREPSLAKGVRENSISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317 (849)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~l~~iiG~~~~i~~l~~~l~~~~~~niLL~ 317 (849)
. .. ... + .+.......|++|+.+|++++++++++++||++++++++.+++.++.++|+||+
T Consensus 147 ~-----~~--~~~---~---------~~~~~~~~~l~~~~~~l~~~~r~~~ld~iiGr~~~i~~l~~~l~r~~~~~~LL~ 207 (468)
T 3pxg_A 147 T-----GS--SAA---G---------TNSNANTPTLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLI 207 (468)
T ss_dssp T-----TC-------------------CCSTHHHHHHSSCCBHHHHTTSSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEE
T ss_pred c-----cc--ccc---C---------cCCccCchHHHHHHHHHHHHHhcCCCCCccCcHHHHHHHHHHHhccCCCCeEEE
Confidence 0 00 000 0 001124578999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhC
Q 003088 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGS 397 (849)
Q Consensus 318 GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~ 397 (849)
||||||||++|+++|+.+..+.+|..+.+.+++.++++ .+++|+++.+++.+++.+...+++|||||
T Consensus 208 G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~-----~~~~g~~e~~~~~~~~~~~~~~~~iLfiD-------- 274 (468)
T 3pxg_A 208 GEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG-----TKYRGEFEDRLKKVMDEIRQAGNIILFID-------- 274 (468)
T ss_dssp SCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------------CTTHHHHHHHHHTCCCCEEEEC--------
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC-----ccccchHHHHHHHHHHHHHhcCCeEEEEe--------
Confidence 99999999999999999999999998889999999887 56789999999999999998888999999
Q ss_pred CCCCCCCCCccHHHHHHHhhhhcCCCeEEEEccChHHHHHHhhccHHHHhccccEEecCCCHHHHHHHHHHHHHHHHhhc
Q 003088 398 GTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHH 477 (849)
Q Consensus 398 ~~~~~~~~~~~~~~~~~L~~~le~~~i~vI~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL~~~~~~~~~~~ 477 (849)
+ ..++++.|++.++++.++||++||..+|++++.++++|.+||++|.|++|+.+++..||+.++.+|+.++
T Consensus 275 ~---------~~~a~~~L~~~L~~g~v~vI~at~~~e~~~~~~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~~~~~~~~ 345 (468)
T 3pxg_A 275 A---------AIDASNILKPSLARGELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDRYEAHH 345 (468)
T ss_dssp C-----------------CCCTTSSSCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTTTSGGGS
T ss_pred C---------chhHHHHHHHhhcCCCEEEEecCCHHHHHHHhhcCHHHHHhCccceeCCCCHHHHHHHHHHHHHHHHHhc
Confidence 1 3467899999999999999999999999999999999999999999999999999999999999888889
Q ss_pred CCccCHHHHHHHHHhhhcccccCcchhhHHHHHHHHhhHHHHhhhhchhhhhhhhcCCCCchHHHHHHHHHHhHHHHHhc
Q 003088 478 NCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGS 557 (849)
Q Consensus 478 ~~~i~~~~l~~~a~ls~~~~~~r~~p~~ai~ll~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 557 (849)
++.++++++..++.++.+|+.++++|++++++++++++.+++.....+.+ ..++...+..+..........
T Consensus 346 ~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ll~~a~~~~~~~~~~~p~~---------i~~l~~~i~~l~~~~~~~~~~ 416 (468)
T 3pxg_A 346 RVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKVRLRSFTTPPN---------LKELEQKLDEVRKEKDAAVQS 416 (468)
T ss_dssp SCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHHHHHHTTSCCSS---------THHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHhccCcCCcHHHHHHHHHHHHHHhccCCCchH---------HHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999888866555442 234444555554444434444
Q ss_pred ccccchhhhccCCcc---hhHHhccCCCCCCCCCCCccCHhHHHHHHHhHhC
Q 003088 558 RLKYDDVVASMGDTS---EIVVESSLPSASDDDEPAVVGPDDIAAVASLWSG 606 (849)
Q Consensus 558 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~g 606 (849)
.++.....+...... .+......|..........|+.+||+++++.|+|
T Consensus 417 ~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (468)
T 3pxg_A 417 QEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQENSEVTVDDIAMVVSSWTG 468 (468)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHSGGGHHHHHHTTCCCTHHHHHHHHTTC-
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccCHHHHHHHHHHHhC
Confidence 444433333321111 1111112222222223468999999999999987
No 5
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=2.7e-39 Score=385.55 Aligned_cols=405 Identities=22% Similarity=0.299 Sum_probs=283.4
Q ss_pred cCCCCccccHHHHHHHHHHHhc-------------CCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEee
Q 003088 287 ELIDPVIGRETEIQRIIQILCR-------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD 353 (849)
Q Consensus 287 ~~l~~iiG~~~~i~~l~~~l~~-------------~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~ 353 (849)
-.+++|.|.++.++.|.+++.- ..+.++|||||||||||++|+++|.++ +++++.++
T Consensus 201 v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el----------g~~~~~v~ 270 (806)
T 3cf2_A 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET----------GAFFFLIN 270 (806)
T ss_dssp CCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT----------TCEEEEEE
T ss_pred CChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh----------CCeEEEEE
Confidence 3578899999888887775421 235689999999999999999999988 78999999
Q ss_pred hhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhh----cCCCeEEEEc
Q 003088 354 MGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL----GRGELQCIAS 429 (849)
Q Consensus 354 ~~~~~~~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~l----e~~~i~vI~a 429 (849)
...+. .++.|+.+..++.+|+.++...|+||||||+|.|++.+..+.+ +....+.+.|+..+ +++.++||+|
T Consensus 271 ~~~l~--sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~--~~~~riv~~LL~~mdg~~~~~~V~VIaa 346 (806)
T 3cf2_A 271 GPEIM--SKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHG--EVERRIVSQLLTLMDGLKQRAHVIVMAA 346 (806)
T ss_dssp HHHHH--SSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCC--TTHHHHHHHHHTHHHHCCGGGCEEEEEE
T ss_pred hHHhh--cccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCC--hHHHHHHHHHHHHHhcccccCCEEEEEe
Confidence 98887 5678999999999999999999999999999999886554322 23445566666555 3578999999
Q ss_pred cChHHHHHHhhccHHHHh--ccc-cEEecCCCHHHHHHHHHHHHHHHHhhcCCccC-HHHHHHHHHhhhcccccCcchhh
Q 003088 430 TTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFT-LEAINAAVHLSARYISDRYLPDK 505 (849)
Q Consensus 430 t~~~~~~~~~~~d~al~~--Rf~-~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~-~~~l~~~a~ls~~~~~~r~~p~~ 505 (849)
||..+ .+|++|+| ||+ .|+|+.|+.++|.+||+.+...+ .+. +-.+..++..+++|. +.+
T Consensus 347 TN~~d-----~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~------~~~~dvdl~~lA~~T~Gfs-----gaD 410 (806)
T 3cf2_A 347 TNRPN-----SIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNM------KLADDVDLEQVANETHGHV-----GAD 410 (806)
T ss_dssp CSSTT-----TSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSS------EECTTCCHHHHHHHCCSCC-----HHH
T ss_pred cCChh-----hcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCC------CCCcccCHHHHHHhcCCCC-----HHH
Confidence 99987 89999999 998 69999999999999998655422 222 223677788887765 467
Q ss_pred HHHHHHHHhhHHHHhhhhchhhhhhhhcCCCCchHHHHHHHHHHhHHHHHhcccccchhhhccCCcchhHHhccCCCCCC
Q 003088 506 AIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASD 585 (849)
Q Consensus 506 ai~ll~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (849)
...++.+|+..+..+...... ..... .....
T Consensus 411 L~~Lv~eA~~~A~~r~~~~i~------~~~~~---------------------------------~~~e~---------- 441 (806)
T 3cf2_A 411 LAALCSEAALQAIRKKMDLID------LEDET---------------------------------IDAEV---------- 441 (806)
T ss_dssp HHHHHHHHHHHHHHHHHHHGG------GTCCC---------------------------------CSHHH----------
T ss_pred HHHHHHHHHHHHHHhcccccc------ccccc---------------------------------cchhh----------
Confidence 778888886655332211100 00000 00000
Q ss_pred CCCCCccCHhHHHHHHHhHhCC-------CcccCCHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHh--------hc
Q 003088 586 DDEPAVVGPDDIAAVASLWSGI-------PVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRS--------RV 650 (849)
Q Consensus 586 ~~~~~~v~~~~i~~~~~~~~g~-------~~~~~~~~~~~~~~~l~~~l~~~i~Gq~~~i~~l~~~l~~~--------~~ 650 (849)
.....++.+|+..++...... ....+.| +.+.|.+++++.|...+... ..
T Consensus 442 -~~~~~v~~~Df~~Al~~~~ps~~r~~~~~~p~v~w--------------~diggl~~~k~~l~e~v~~p~~~p~~f~~~ 506 (806)
T 3cf2_A 442 -MNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTW--------------EDIGGLEDVKRELQELVQYPVEHPDKFLKF 506 (806)
T ss_dssp -HHHCEECTTHHHHHHSSSSCCCCCCCCCBCCCCCS--------------TTCCSCHHHHHHHTTTTTTTTTCSGGGSSS
T ss_pred -hccceeeHHHHHHHHHhCCCcccccccccCCCCCH--------------HHhCCHHHHHHHHHHHHHhhhhCHHHHHhc
Confidence 001234455555554332210 1112222 45778888888887776542 12
Q ss_pred CCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccccccCCCCCccccccCc--chhHHHH
Q 003088 651 GLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGG--LLTEAIR 728 (849)
Q Consensus 651 g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~vg~~~~~--~l~~~i~ 728 (849)
|. +|...+|||||||||||++|+++|..+ +.+|+.++++++.. .|+|+.+.. .++...+
T Consensus 507 g~----~~~~gvLl~GPPGtGKT~lAkaiA~e~---~~~f~~v~~~~l~s------------~~vGese~~vr~lF~~Ar 567 (806)
T 3cf2_A 507 GM----TPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPELLT------------MWFGESEANVREIFDKAR 567 (806)
T ss_dssp CC----CCCSCCEEESSTTSSHHHHHHHHHHTT---TCEEEECCHHHHHT------------TTCSSCHHHHHHHHHHHH
T ss_pred CC----CCCceEEEecCCCCCchHHHHHHHHHh---CCceEEeccchhhc------------cccchHHHHHHHHHHHHH
Confidence 22 233459999999999999999999985 77899999888765 377776632 2444445
Q ss_pred hCCCeEEEEeCccccCH--------------HHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCchhhhcccCCcc
Q 003088 729 RRPFTLLLLDEIEKAHP--------------DIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKGRHGSI 794 (849)
Q Consensus 729 ~~~~~vl~lDEid~l~~--------------~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~~~~~~~~ 794 (849)
+..+|||||||||.+-+ .+.+.||..|+.-. ...+++||+|||....
T Consensus 568 ~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~---------~~~~V~vi~aTN~p~~---------- 628 (806)
T 3cf2_A 568 QAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS---------TKKNVFIIGATNRPDI---------- 628 (806)
T ss_dssp TTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSC---------SSSSEEEECC-CCSSS----------
T ss_pred HcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCC---------CCCCEEEEEeCCCchh----------
Confidence 66679999999998732 37899999998621 1246888999997421
Q ss_pred ccccccCCcccHHhHHHHHHHHHHhhCChHHhh--ccccEEEcCCCCHHHHccccCC
Q 003088 795 GFLLEDNESTSYAGMKTLVVEELKAYFRPELLN--RIDEVVVFRSLEKAQVCQLPLI 849 (849)
Q Consensus 795 gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~--R~d~~i~f~pl~~~~~~~I~~l 849 (849)
++|+|+. |||..|.|++++.++..+|+++
T Consensus 629 --------------------------lD~AllRpgRfd~~i~v~lPd~~~R~~il~~ 659 (806)
T 3cf2_A 629 --------------------------IDPAILRPGRLDQLIYIPLPDEKSRVAILKA 659 (806)
T ss_dssp --------------------------SCHHHHSTTTSCCEEEC-----CHHHHTTTT
T ss_pred --------------------------CCHhHcCCCcceEEEEECCcCHHHHHHHHHH
Confidence 7899997 9999999999999999888863
No 6
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.97 E-value=2.1e-31 Score=323.85 Aligned_cols=418 Identities=21% Similarity=0.274 Sum_probs=271.1
Q ss_pred hhcCCCCccccHHHHHHHHHHHhc-------------CCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEE
Q 003088 285 SEELIDPVIGRETEIQRIIQILCR-------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMS 351 (849)
Q Consensus 285 ~~~~l~~iiG~~~~i~~l~~~l~~-------------~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~ 351 (849)
.+..+++++|++++++.+.+++.. ....++||+||||||||++|++||..+ +..++.
T Consensus 199 ~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l----------~~~~i~ 268 (806)
T 1ypw_A 199 NEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET----------GAFFFL 268 (806)
T ss_dssp SSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTT----------TCEEEE
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHc----------CCcEEE
Confidence 345688999999999998887743 345689999999999999999999887 567788
Q ss_pred eehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhc----CCCeEEE
Q 003088 352 LDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG----RGELQCI 427 (849)
Q Consensus 352 l~~~~~~~~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le----~~~i~vI 427 (849)
++...+. ..+.++.+..++.+|+.+....+++|||||+|.+.+......+ +....+.+.|...++ +..+.+|
T Consensus 269 v~~~~l~--~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~--~~~~~~~~~Ll~ll~g~~~~~~v~vI 344 (806)
T 1ypw_A 269 INGPEIM--SKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHG--EVERRIVSQLLTLMDGLKQRAHVIVM 344 (806)
T ss_dssp EEHHHHS--SSSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCS--HHHHHHHHHHHHHHHSSCTTSCCEEE
T ss_pred EEchHhh--hhhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccc--hHHHHHHHHHHHHhhhhcccccEEEe
Confidence 8887776 4567899999999999999888999999999999875433111 122345555665554 4678999
Q ss_pred EccChHHHHHHhhccHHHHh--ccc-cEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhcccccCcchh
Q 003088 428 ASTTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPD 504 (849)
Q Consensus 428 ~at~~~~~~~~~~~d~al~~--Rf~-~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~~~r~~p~ 504 (849)
++||..+ .+++++++ ||. .+.++.|+.+++.+||+.+..++... .+..+..++..+.+|. +.
T Consensus 345 ~atn~~~-----~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~-----~~~~l~~la~~t~g~~-----g~ 409 (806)
T 1ypw_A 345 AATNRPN-----SIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-----DDVDLEQVANETHGHV-----GA 409 (806)
T ss_dssp EECSCTT-----TSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCC-----TTCCTHHHHHSCSSCC-----HH
T ss_pred cccCCch-----hcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCc-----ccchhHHHHHhhcCcc-----hH
Confidence 9999886 78999988 996 59999999999999998765533211 1112445555555554 23
Q ss_pred hHHHHHHHHhhHHHHhhhhchhhhhhhhcCCCCchHHHHHHHHHHhHHHHHhcccccchhhhccCCcchhHHhccCCCCC
Q 003088 505 KAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSAS 584 (849)
Q Consensus 505 ~ai~ll~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (849)
....++.++...+......... . .+ ..+.. .
T Consensus 410 dl~~l~~ea~~~a~r~~~~~i~-~---------~~-----~~~~~-------------------------~--------- 440 (806)
T 1ypw_A 410 DLAALCSEAALQAIRKKMDLID-L---------ED-----ETIDA-------------------------E--------- 440 (806)
T ss_dssp HHHHHHHHHHHHHHHHTTTTTS-C---------HH-----HHCCH-------------------------H---------
T ss_pred HHHHHHHHHHHHHHhhhccccc-h---------hh-----hccch-------------------------h---------
Confidence 4444555444332111100000 0 00 00000 0
Q ss_pred CCCCCCccCHhHHHHHHHhHhCCCcccCCHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHhhc----CCCCCCCCCc
Q 003088 585 DDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRV----GLKDPNRPTA 660 (849)
Q Consensus 585 ~~~~~~~v~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~i~Gq~~~i~~l~~~l~~~~~----g~~~~~~p~~ 660 (849)
......++..++...+............ ........+.+.|++.+++.+...+..... .......+..
T Consensus 441 -~~~~~~v~~~d~~~al~~~~~s~~~~~~-------~~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~ 512 (806)
T 1ypw_A 441 -VMNSLAVTMDDFRWALSQSNPSALRETV-------VEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSK 512 (806)
T ss_dssp -HHTTCCCCTTHHHHHHHHSCCCCCCCCC-------CCCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCC
T ss_pred -hhhhhhhhhhhhhccccccCchhhhhhc-------ccCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCc
Confidence 0001223334444444332211000000 000001125678888888887766643211 0111123445
Q ss_pred cceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccccccCCCCCccccccC--cchhHHHHhCCCeEEEEe
Q 003088 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEG--GLLTEAIRRRPFTLLLLD 738 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~vg~~~~--~~l~~~i~~~~~~vl~lD 738 (849)
++||+||||||||++|+++|..+ +.+++.++++++... |+|..+. ..+....+...++|||||
T Consensus 513 ~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~~~l~~~------------~~g~~~~~i~~~f~~a~~~~p~vl~iD 577 (806)
T 1ypw_A 513 GVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPELLTM------------WFGESEANVREIFDKARQAAPCVLFFD 577 (806)
T ss_dssp CCCCBCCTTSSHHHHHHHHHHHH---TCCCCCCCCSSSTTC------------CTTTSSHHHHHHHHHHHHHCSBCCCCS
T ss_pred eeEEECCCCCCHHHHHHHHHHHh---CCCEEEEechHhhhh------------hcCccHHHHHHHHHHHHhcCCeEEEEE
Confidence 69999999999999999999997 567899988876542 4554432 123344445556899999
Q ss_pred Ccccc--------------CHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCchhhhcccCCccccccccCCcc
Q 003088 739 EIEKA--------------HPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNEST 804 (849)
Q Consensus 739 Eid~l--------------~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~ 804 (849)
|||++ ...+++.||+.|+... ...+++||+|||....
T Consensus 578 Eid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~---------~~~~v~vI~tTN~~~~-------------------- 628 (806)
T 1ypw_A 578 ELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS---------TKKNVFIIGATNRPDI-------------------- 628 (806)
T ss_dssp SHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC---------------CCBCCCCCBSCGG--------------------
T ss_pred ChhhhhhhccCCCCCcchhHHHHHHHHHHHHhccc---------ccCCeEEEEecCCccc--------------------
Confidence 99986 2457889999987632 2347899999997421
Q ss_pred cHHhHHHHHHHHHHhhCChHHhh--ccccEEEcCCCCHHHHccccC
Q 003088 805 SYAGMKTLVVEELKAYFRPELLN--RIDEVVVFRSLEKAQVCQLPL 848 (849)
Q Consensus 805 ~~~~~~~~~~~~l~~~~~pell~--R~d~~i~f~pl~~~~~~~I~~ 848 (849)
++|+|++ ||+..|.|++++.++..+|++
T Consensus 629 ----------------ld~allrpgRf~~~i~~~~p~~~~r~~Il~ 658 (806)
T 1ypw_A 629 ----------------IDPAILRPGRLDQLIYIPLPDEKSRVAILK 658 (806)
T ss_dssp ----------------GSCTTSSGGGTTSCCCCCCCCCSHHHHHTT
T ss_pred ----------------CCHHHhCccccCceeecCCCCHHHHHHHHH
Confidence 6788888 999999999999999888875
No 7
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.94 E-value=4.3e-26 Score=248.07 Aligned_cols=224 Identities=60% Similarity=1.011 Sum_probs=199.4
Q ss_pred HHHHHHHHHHHHHhccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEee
Q 003088 615 DERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLD 694 (849)
Q Consensus 615 ~~~~~~~~l~~~l~~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~ 694 (849)
.+...+..+.+.|.+.++||+.+++.+...+.....++..|.+|..++||+||||||||++|+++|+.+.+...+++.++
T Consensus 3 ~~~~~l~~l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~ 82 (311)
T 4fcw_A 3 GEREKLLRLEEELHKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRID 82 (311)
T ss_dssp HHHHHHHTHHHHHHTTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEE
T ss_pred cHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEee
Confidence 56778889999999999999999999999999998898888899889999999999999999999999988788899999
Q ss_pred ccccccccccccccCCCCCccccccCcchhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeE
Q 003088 695 MSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRRRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNAL 774 (849)
Q Consensus 695 ~~~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~i~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~ 774 (849)
|+.+........++|.+++|+|+...+.+.+++..++++||||||+|++++.+++.|+++|+++.+.+..+..+++++++
T Consensus 83 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~i 162 (311)
T 4fcw_A 83 MTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTV 162 (311)
T ss_dssp GGGCCSTTHHHHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEE
T ss_pred cccccccccHHHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcE
Confidence 99998888888899999999999887889999999999999999999999999999999999999998888899999999
Q ss_pred EEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHHHccccC
Q 003088 775 IVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQLPL 848 (849)
Q Consensus 775 iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~I~~ 848 (849)
||+|||.+...+..... . ...++.+...+...+...|+|+|++||+.++.|.|++.+++..|++
T Consensus 163 iI~ttn~~~~~i~~~~~----~------~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~ 226 (311)
T 4fcw_A 163 IIMTSNLGSPLILEGLQ----K------GWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVE 226 (311)
T ss_dssp EEEEESTTHHHHHTTTT----S------CCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHH
T ss_pred EEEecccCHHHHHhhhc----c------cccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHH
Confidence 99999998877664321 0 1223356666777777889999999999999999999999988864
No 8
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=99.93 E-value=4e-25 Score=212.79 Aligned_cols=142 Identities=31% Similarity=0.557 Sum_probs=131.0
Q ss_pred cchHHHhhHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhcCCC--hHHHHHHCCCCHHHHHHHHHHHhhhCCCCCCcch
Q 003088 79 SSVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDR--HPNGFLESGITIDKAREAVVSIWHSTNNQDTDDA 156 (849)
Q Consensus 79 ~~~ferft~~a~~~l~~A~~~A~~~~~~~v~~eHLLlaLl~~~~--~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~ 156 (849)
.+||+|||++++++|..|+++|+++||++|+|||||+||+.+++ +.++|..+|++++.++.++...+++.|.
T Consensus 1 ~~m~~~~t~~~~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~~~~~iL~~~gv~~~~l~~~l~~~l~~~~~------ 74 (146)
T 3fh2_A 1 QAMFERFTDRARRVIVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESMGISLDAVRQEVEEIIGQGSQ------ 74 (146)
T ss_dssp CGGGGGBCHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCCSHHHHHHHHTTCCHHHHHHHHHHHHCCCSC------
T ss_pred CchhhhcCHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHhCCCChHHHHHHHcCCCHHHHHHHHHHHhccCCC------
Confidence 36999999999999999999999999999999999999998755 6889999999999999999999987653
Q ss_pred hccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHhhhcCCchhhHHHHhhcCCHHHHHHHHHHhh
Q 003088 157 AAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRL 233 (849)
Q Consensus 157 ~~~~~~~~~~~~~~~s~~~~~vl~~A~~~a~~~g~~~I~~ehlLlall~~~~~~a~~iL~~~gv~~~~l~~~~~~~~ 233 (849)
..++.++||+.++++|+.|..+|+++|+.||++||||+||+.++++.+.++|+++|++.+.+++.+.+.+
T Consensus 75 -------~~~~~~~~s~~~~~vL~~A~~~a~~~~~~~i~~eHlLlall~~~~~~a~~iL~~~gv~~~~l~~~l~~~~ 144 (146)
T 3fh2_A 75 -------PTTGHIPFTPRAKKVLELSLREGLQMGHKYIGTEFLLLGLIREGEGVAAQVLVKLGADLPRVRQQVIQLL 144 (146)
T ss_dssp -------CCCSCCCBCHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCSSHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred -------CCcCCCcCCHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHhCCCcHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 2235689999999999999999999999999999999999998889999999999999999999887765
No 9
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=99.91 E-value=2.8e-24 Score=206.52 Aligned_cols=140 Identities=28% Similarity=0.444 Sum_probs=128.0
Q ss_pred chHHHhhHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhcCCC--hHHHHHHCCCCHHHHHHHHHHHhhhCCCCCCcchh
Q 003088 80 SVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDR--HPNGFLESGITIDKAREAVVSIWHSTNNQDTDDAA 157 (849)
Q Consensus 80 ~~ferft~~a~~~l~~A~~~A~~~~~~~v~~eHLLlaLl~~~~--~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (849)
.+|++||++++++|..|+++|+++||++|+|||||+|||.+++ +.++|..+|++++.++..+...+++.|.
T Consensus 3 ~~~~~~T~~a~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~~~~~iL~~~gvd~~~l~~~l~~~l~~~~~------- 75 (145)
T 3fes_A 3 ANFNRFTQRAKKAIDLAFESAKSLGHNIVGSEHILLGLLREEEGIAAKVLSKVGFTEAYLEGKIVDMEGKGEE------- 75 (145)
T ss_dssp -CCCCBCHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHCSSHHHHHHHHHTCCHHHHHHHHHHHHCCCSC-------
T ss_pred CcccccCHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCCChHHHHHHHcCCCHHHHHHHHHHHHhcCCC-------
Confidence 4688999999999999999999999999999999999998865 6889999999999999999999887642
Q ss_pred ccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHhhhcCCchhhHHHHhhcCCHHHHHHHHHHhh
Q 003088 158 AQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRL 233 (849)
Q Consensus 158 ~~~~~~~~~~~~~~s~~~~~vl~~A~~~a~~~g~~~I~~ehlLlall~~~~~~a~~iL~~~gv~~~~l~~~~~~~~ 233 (849)
.++.++||+.++++|+.|..+|+++|+.||++||||+||+.++++.+.++|+++|++.+.+++.+.+.+
T Consensus 76 -------~~~~~~~s~~~~~vl~~A~~~A~~~~~~~v~~eHlLlAll~~~~~~a~~iL~~~gv~~~~l~~~i~~~~ 144 (145)
T 3fes_A 76 -------ISEDIVLSPRSKQILELSGMFANKLKTNYIGTEHILLAIIQEGEGIANKILNYAGVNDRTLAQLTIDMM 144 (145)
T ss_dssp -------CCSCCEECHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHHHHHHTC
T ss_pred -------CCCCCCCCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhCCCcHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 235689999999999999999999999999999999999998888999999999999999998876653
No 10
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=99.90 E-value=1.5e-23 Score=202.98 Aligned_cols=140 Identities=32% Similarity=0.522 Sum_probs=124.6
Q ss_pred chHHHhhHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhcCCC--hHHHHHHCCCCHHHHHHHHHHHhhhCCCCCCcchh
Q 003088 80 SVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDR--HPNGFLESGITIDKAREAVVSIWHSTNNQDTDDAA 157 (849)
Q Consensus 80 ~~ferft~~a~~~l~~A~~~A~~~~~~~v~~eHLLlaLl~~~~--~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (849)
|||+|||++++++|..|+++|+++||.+|+|||||+|||.+++ +.++|..+|+|++.++.++...+++.|.
T Consensus 1 M~~~~~t~~~~~al~~A~~~A~~~~h~~i~~eHlLlaLl~~~~~~~~~iL~~~g~~~~~l~~~l~~~l~~~~~------- 73 (150)
T 2y1q_A 1 MMFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEVESLIGRAQE------- 73 (150)
T ss_dssp ---CCBCHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHCSSHHHHHHHHTTCCHHHHHHHHHHHHCCC---------
T ss_pred CcchhhCHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCCCHHHHHHHHcCCCHHHHHHHHHHHhccCCc-------
Confidence 5799999999999999999999999999999999999998876 6889999999999999999999887653
Q ss_pred ccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHhhhcCCchhhHHHHhhcCCHHHHHHHHHHhh
Q 003088 158 AQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRL 233 (849)
Q Consensus 158 ~~~~~~~~~~~~~~s~~~~~vl~~A~~~a~~~g~~~I~~ehlLlall~~~~~~a~~iL~~~gv~~~~l~~~~~~~~ 233 (849)
. .+.++||+.++++|+.|..+|+.+|+.||++||||+||+.++++.+.++|+++|++.+.++..+.+..
T Consensus 74 ----~---~~~~~~s~~~~~vL~~A~~~A~~~~~~~i~~ehlLlall~~~~~~a~~~L~~~gi~~~~l~~~i~~~~ 142 (150)
T 2y1q_A 74 ----M---SQTIHYTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLL 142 (150)
T ss_dssp ----------CCEECHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCCSHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred ----c---cccCCCCHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHhCCCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 1 13678999999999999999999999999999999999998888888999999999999998876654
No 11
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=99.90 E-value=2e-23 Score=201.54 Aligned_cols=139 Identities=18% Similarity=0.236 Sum_probs=120.5
Q ss_pred chHHHhhHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhcCCC--hHHHHHHCCCCHHHHHHHHHHHhhhCCCCCCcchh
Q 003088 80 SVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDR--HPNGFLESGITIDKAREAVVSIWHSTNNQDTDDAA 157 (849)
Q Consensus 80 ~~ferft~~a~~~l~~A~~~A~~~~~~~v~~eHLLlaLl~~~~--~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (849)
|||++||++++++|..|+.+|+++||.+|+|||||+|||.+++ +.++|..+|++++.++.++...+++.|.
T Consensus 1 M~~~~~t~~~~~~l~~A~~~A~~~~~~~i~~eHlLlaLl~~~~~~~~~iL~~~g~~~~~l~~~l~~~l~~~p~------- 73 (148)
T 1khy_A 1 MRLDRLTNKFQLALADAQSLALGHDNQFIEPLHLMSALLNQEGGSVSPLLTSAGINAGQLRTDINQALNRLPQ------- 73 (148)
T ss_dssp ---CCBCHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHTCTTCSHHHHHHHHTCCHHHHHHHHHHHHTTSCC-------
T ss_pred CChhhhhHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHcCCCchHHHHHHHcCCCHHHHHHHHHHHHHhCCC-------
Confidence 5789999999999999999999999999999999999998875 6899999999999999999999988764
Q ss_pred ccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHhhhcCCchhhHHHHhhcCCHHHHHHHHH
Q 003088 158 AQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAV 230 (849)
Q Consensus 158 ~~~~~~~~~~~~~~s~~~~~vl~~A~~~a~~~g~~~I~~ehlLlall~~~~~~a~~iL~~~gv~~~~l~~~~~ 230 (849)
..+..+.++||+.++++|+.|..+|+.+|+.||++||||+||+ ++++.+.++|+++|++.+.++..+.
T Consensus 74 ----~~~~~~~~~~s~~~~~vl~~A~~~a~~~~~~~i~~ehlLlall-~~~~~~~~~L~~~gi~~~~l~~~l~ 141 (148)
T 1khy_A 74 ----VEGTGGDVQPSQDLVRVLNLCDKLAQKRGDNFISSELFVLAAL-ESRGTLADILKAAGATTANITQAIE 141 (148)
T ss_dssp ----C-------CBCHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHH-TSCHHHHHHHHHTTCCHHHHHHHHH
T ss_pred ----CCCCCCCcCcCHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHH-cCCcHHHHHHHHcCCCHHHHHHHHH
Confidence 1122246899999999999999999999999999999999999 5567889999999999999987654
No 12
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.90 E-value=6.8e-23 Score=225.51 Aligned_cols=201 Identities=23% Similarity=0.263 Sum_probs=159.3
Q ss_pred cCCCCccccHHHHHHHHHHH-------------hcCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEee
Q 003088 287 ELIDPVIGRETEIQRIIQIL-------------CRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD 353 (849)
Q Consensus 287 ~~l~~iiG~~~~i~~l~~~l-------------~~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~ 353 (849)
.++++|.|.++.++.|.+++ ..+.+.++|||||||||||++|+++|.++ +++++.++
T Consensus 145 v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~----------~~~f~~v~ 214 (405)
T 4b4t_J 145 STYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHT----------DCKFIRVS 214 (405)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHH----------TCEEEEEE
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhh----------CCCceEEE
Confidence 46899999999999888754 12346789999999999999999999999 88999999
Q ss_pred hhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHH---HHHHHhhhhc----CCCeEE
Q 003088 354 MGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLD---ISNLLKPSLG----RGELQC 426 (849)
Q Consensus 354 ~~~~~~~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~---~~~~L~~~le----~~~i~v 426 (849)
.+.+. .++.|+.+..++.+|..++...|+||||||+|.+++.+..+.+ ++... ..+.|+..++ ..++.+
T Consensus 215 ~s~l~--sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~--~~~~~~~~~l~~lL~~lDg~~~~~~V~v 290 (405)
T 4b4t_J 215 GAELV--QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSG--GGDSEVQRTMLELLNQLDGFETSKNIKI 290 (405)
T ss_dssp GGGGS--CSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSS--GGGGHHHHHHHHHHHHHHTTTCCCCEEE
T ss_pred hHHhh--ccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCC--CCcHHHHHHHHHHHHhhhccCCCCCeEE
Confidence 98887 5789999999999999999999999999999999876544322 12222 2334444443 567999
Q ss_pred EEccChHHHHHHhhccHHHHh--ccc-cEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHH-HHHHHHHhhhcccccCcc
Q 003088 427 IASTTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLE-AINAAVHLSARYISDRYL 502 (849)
Q Consensus 427 I~at~~~~~~~~~~~d~al~~--Rf~-~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~-~l~~~a~ls~~~~~~r~~ 502 (849)
|+|||..+ .+|++|+| ||+ .|+|+.|+.++|.+||+.+..++ .++++ .+..++..+.+|.
T Consensus 291 IaATNrpd-----~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~------~l~~dvdl~~lA~~t~G~S----- 354 (405)
T 4b4t_J 291 IMATNRLD-----ILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKM------NLTRGINLRKVAEKMNGCS----- 354 (405)
T ss_dssp EEEESCSS-----SSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTS------BCCSSCCHHHHHHHCCSCC-----
T ss_pred EeccCChh-----hCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCC------CCCccCCHHHHHHHCCCCC-----
Confidence 99999997 89999999 998 69999999999999998766532 22222 3677888887764
Q ss_pred hhhHHHHHHHHhhHH
Q 003088 503 PDKAIDLVDEAGSRA 517 (849)
Q Consensus 503 p~~ai~ll~~a~~~~ 517 (849)
+.+...++.+|+..+
T Consensus 355 GADi~~l~~eA~~~A 369 (405)
T 4b4t_J 355 GADVKGVCTEAGMYA 369 (405)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 467778888886654
No 13
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.89 E-value=6.8e-22 Score=220.01 Aligned_cols=201 Identities=22% Similarity=0.242 Sum_probs=157.9
Q ss_pred cCCCCccccHHHHHHHHHHH-------------hcCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEee
Q 003088 287 ELIDPVIGRETEIQRIIQIL-------------CRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD 353 (849)
Q Consensus 287 ~~l~~iiG~~~~i~~l~~~l-------------~~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~ 353 (849)
.+|++|.|.++.++.|.+.+ ..+.+.++|||||||||||++|+++|.++ ++.++.++
T Consensus 206 vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~----------~~~fi~vs 275 (467)
T 4b4t_H 206 VTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRT----------DATFIRVI 275 (467)
T ss_dssp CCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHH----------TCEEEEEE
T ss_pred CCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhcc----------CCCeEEEE
Confidence 46899999999999888754 12456789999999999999999999999 88999999
Q ss_pred hhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHH---HHHHhhhhc----CCCeEE
Q 003088 354 MGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDI---SNLLKPSLG----RGELQC 426 (849)
Q Consensus 354 ~~~~~~~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~---~~~L~~~le----~~~i~v 426 (849)
.+.+. .++.|+.+..++.+|..++...|+||||||+|.+++.+..+.+ +..... .+.|+..++ .+.+++
T Consensus 276 ~s~L~--sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~--~~~~~~~~~l~~lL~~lDg~~~~~~ViV 351 (467)
T 4b4t_H 276 GSELV--QKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGA--GGDNEVQRTMLELITQLDGFDPRGNIKV 351 (467)
T ss_dssp GGGGC--CCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSC--GGGGHHHHHHHHHHHHHHSSCCTTTEEE
T ss_pred hHHhh--cccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCC--CccHHHHHHHHHHHHHhhccCCCCcEEE
Confidence 88887 5779999999999999999999999999999999876544221 112222 233333332 567999
Q ss_pred EEccChHHHHHHhhccHHHHh--ccc-cEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHH-HHHHHHHhhhcccccCcc
Q 003088 427 IASTTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLE-AINAAVHLSARYISDRYL 502 (849)
Q Consensus 427 I~at~~~~~~~~~~~d~al~~--Rf~-~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~-~l~~~a~ls~~~~~~r~~ 502 (849)
|+|||..+ .+|++|+| ||+ .|+|+.|+.++|.+||+.+...+ .+..+ .+..++..+.+|.
T Consensus 352 IaATNrpd-----~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~------~l~~dvdl~~LA~~T~GfS----- 415 (467)
T 4b4t_H 352 MFATNRPN-----TLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSM------SVERGIRWELISRLCPNST----- 415 (467)
T ss_dssp EEECSCTT-----SBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTS------CBCSSCCHHHHHHHCCSCC-----
T ss_pred EeCCCCcc-----cCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCC------CCCCCCCHHHHHHHCCCCC-----
Confidence 99999987 89999999 998 69999999999999998776532 22221 2567788887764
Q ss_pred hhhHHHHHHHHhhHH
Q 003088 503 PDKAIDLVDEAGSRA 517 (849)
Q Consensus 503 p~~ai~ll~~a~~~~ 517 (849)
+.+...++.+|+..+
T Consensus 416 GADI~~l~~eAa~~A 430 (467)
T 4b4t_H 416 GAELRSVCTEAGMFA 430 (467)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 466777888876544
No 14
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.88 E-value=2.6e-22 Score=221.14 Aligned_cols=201 Identities=24% Similarity=0.288 Sum_probs=158.1
Q ss_pred cCCCCccccHHHHHHHHHHHh-------------cCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEee
Q 003088 287 ELIDPVIGRETEIQRIIQILC-------------RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD 353 (849)
Q Consensus 287 ~~l~~iiG~~~~i~~l~~~l~-------------~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~ 353 (849)
.+|++|.|.++.++.|.+.+. .+.+.++|||||||||||++|+++|.++ ++.++.++
T Consensus 179 v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~----------~~~fi~v~ 248 (437)
T 4b4t_I 179 ESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT----------SATFLRIV 248 (437)
T ss_dssp CCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHH----------TCEEEEEE
T ss_pred CcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHh----------CCCEEEEE
Confidence 468899999999988887541 2345789999999999999999999999 88999999
Q ss_pred hhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHH---HHHhhhhc----CCCeEE
Q 003088 354 MGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDIS---NLLKPSLG----RGELQC 426 (849)
Q Consensus 354 ~~~~~~~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~---~~L~~~le----~~~i~v 426 (849)
.+.+. .++.|+.+..++.+|..++...|+||||||+|.+++.+..+.. .+..... +.|+..++ .++++|
T Consensus 249 ~s~l~--sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~--~~~~~~~~~l~~LL~~lDg~~~~~~ViV 324 (437)
T 4b4t_I 249 GSELI--QKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNS--GGEREIQRTMLELLNQLDGFDDRGDVKV 324 (437)
T ss_dssp SGGGC--CSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSC--SSCCHHHHHHHHHHHHHHHCCCSSSEEE
T ss_pred HHHhh--hccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCC--CccHHHHHHHHHHHHHhhCcCCCCCEEE
Confidence 88887 5789999999999999999999999999999999876644322 1222332 33333332 567999
Q ss_pred EEccChHHHHHHhhccHHHHh--ccc-cEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHH-HHHHHHHhhhcccccCcc
Q 003088 427 IASTTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLE-AINAAVHLSARYISDRYL 502 (849)
Q Consensus 427 I~at~~~~~~~~~~~d~al~~--Rf~-~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~-~l~~~a~ls~~~~~~r~~ 502 (849)
|+|||..+ .+|++|+| ||+ .|+|+.|+.++|.+||+.+..++ .++++ .+..++..+.+|.
T Consensus 325 IaATNrpd-----~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~------~l~~dvdl~~LA~~T~GfS----- 388 (437)
T 4b4t_I 325 IMATNKIE-----TLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKM------NLSEDVNLETLVTTKDDLS----- 388 (437)
T ss_dssp EEEESCST-----TCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTS------CBCSCCCHHHHHHHCCSCC-----
T ss_pred EEeCCChh-----hcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCC------CCCCcCCHHHHHHhCCCCC-----
Confidence 99999997 89999999 998 69999999999999998766532 23322 3677888887764
Q ss_pred hhhHHHHHHHHhhHH
Q 003088 503 PDKAIDLVDEAGSRA 517 (849)
Q Consensus 503 p~~ai~ll~~a~~~~ 517 (849)
+.+...++.+|+..+
T Consensus 389 GADI~~l~~eA~~~A 403 (437)
T 4b4t_I 389 GADIQAMCTEAGLLA 403 (437)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 366777788776554
No 15
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.88 E-value=1.9e-22 Score=201.90 Aligned_cols=191 Identities=56% Similarity=0.930 Sum_probs=165.1
Q ss_pred hhHHhhhhhhHHHHhhcCCCCccccHHHHHHHHHHHhcCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEE
Q 003088 271 SALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIM 350 (849)
Q Consensus 271 ~~l~~~~~~l~~~~~~~~l~~iiG~~~~i~~l~~~l~~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~ 350 (849)
+.|++++.+|.+++++..+++++|++++++.+.+.+......+++|+||||||||++|+.+++.+.....+....+..++
T Consensus 3 ~~l~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~ 82 (195)
T 1jbk_A 3 QALKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVL 82 (195)
T ss_dssp HHHHHHEEEHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEE
T ss_pred hHHHHHhHHHHHHHhhccccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEE
Confidence 56889999999999999999999999999999999988888899999999999999999999999887777666788999
Q ss_pred EeehhhhhccccccchHHHHHHHHHHHHHh-cCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCCCeEEEEc
Q 003088 351 SLDMGLLMAGAKERGELEARVTTLISEIQK-SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIAS 429 (849)
Q Consensus 351 ~l~~~~~~~~~~~~g~~e~~l~~l~~~~~~-~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~~i~vI~a 429 (849)
.+++..+..+....+..+..+..++..+.. .++.||||||+|.+.+.+.. ....++.+.|+.+++.+++.+|++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~-----~~~~~~~~~l~~~~~~~~~~~i~~ 157 (195)
T 1jbk_A 83 ALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKA-----DGAMDAGNMLKPALARGELHCVGA 157 (195)
T ss_dssp EECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT-----------CCCCHHHHHHHHHTTSCCEEEE
T ss_pred EeeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcc-----cchHHHHHHHHHhhccCCeEEEEe
Confidence 999988887777778888888888887755 45789999999999754322 224456788888889999999999
Q ss_pred cChHHHHHHhhccHHHHhccccEEecCCCHHHHHHHH
Q 003088 430 TTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRIL 466 (849)
Q Consensus 430 t~~~~~~~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL 466 (849)
|+..++...+.+++++.+||..+.|++|+.+++.+||
T Consensus 158 ~~~~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 158 TTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp ECHHHHHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred CCHHHHHHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 9999888888889999999999999999999998876
No 16
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.88 E-value=3.9e-22 Score=222.93 Aligned_cols=202 Identities=20% Similarity=0.251 Sum_probs=158.4
Q ss_pred cCCCCccccHHHHHHHHHHH-------------hcCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEee
Q 003088 287 ELIDPVIGRETEIQRIIQIL-------------CRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD 353 (849)
Q Consensus 287 ~~l~~iiG~~~~i~~l~~~l-------------~~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~ 353 (849)
.++++|.|.++.++.|.+.+ ..+.+.++|||||||||||++|+++|.++ +++++.++
T Consensus 178 ~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~----------~~~f~~v~ 247 (434)
T 4b4t_M 178 ETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT----------NATFLKLA 247 (434)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH----------TCEEEEEE
T ss_pred CChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHh----------CCCEEEEe
Confidence 46899999999999988753 12346789999999999999999999998 88999999
Q ss_pred hhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHH---HHHHhhhhc----CCCeEE
Q 003088 354 MGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDI---SNLLKPSLG----RGELQC 426 (849)
Q Consensus 354 ~~~~~~~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~---~~~L~~~le----~~~i~v 426 (849)
.+.+. .++.|+.+..++.+|..++...|+||||||+|.+++.+..+.+ ++.... .+.|+..++ .++++|
T Consensus 248 ~s~l~--~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~--~~~~~~~~~~~~lL~~ldg~~~~~~ViV 323 (434)
T 4b4t_M 248 APQLV--QMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEK--SGDREVQRTMLELLNQLDGFSSDDRVKV 323 (434)
T ss_dssp GGGGC--SSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGG--GTTHHHHHHHHHHHHHHTTSCSSCSSEE
T ss_pred hhhhh--hcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCC--CCchHHHHHHHHHHHHhhccCCCCCEEE
Confidence 88887 5789999999999999999999999999999999876544221 122232 333444443 467899
Q ss_pred EEccChHHHHHHhhccHHHHh--ccc-cEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhcccccCcch
Q 003088 427 IASTTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLP 503 (849)
Q Consensus 427 I~at~~~~~~~~~~~d~al~~--Rf~-~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~~~r~~p 503 (849)
|+|||..+ .+|++|.| ||+ .|+|+.|+.++|.+||+.+..++.....+ .+..++..+.+|. +
T Consensus 324 IaaTNrp~-----~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dv-----dl~~lA~~t~G~s-----G 388 (434)
T 4b4t_M 324 LAATNRVD-----VLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDI-----NWQELARSTDEFN-----G 388 (434)
T ss_dssp EEECSSCC-----CCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCC-----CHHHHHHHCSSCC-----H
T ss_pred EEeCCCch-----hcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcC-----CHHHHHHhCCCCC-----H
Confidence 99999987 89999988 998 69999999999999998877644222222 2567788777764 4
Q ss_pred hhHHHHHHHHhhHH
Q 003088 504 DKAIDLVDEAGSRA 517 (849)
Q Consensus 504 ~~ai~ll~~a~~~~ 517 (849)
.+...++.+|+..+
T Consensus 389 ADi~~l~~eA~~~a 402 (434)
T 4b4t_M 389 AQLKAVTVEAGMIA 402 (434)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 66777888876554
No 17
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.87 E-value=7.5e-22 Score=196.90 Aligned_cols=184 Identities=58% Similarity=0.927 Sum_probs=159.3
Q ss_pred hhHHhhhhhhHHHHhhcCCCCccccHHHHHHHHHHHhcCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEE
Q 003088 271 SALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIM 350 (849)
Q Consensus 271 ~~l~~~~~~l~~~~~~~~l~~iiG~~~~i~~l~~~l~~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~ 350 (849)
..|++|+.+|.+++++..+++++|++++++.+.+.+......+++|+||||||||++|+.+++.+.....|....+..++
T Consensus 3 ~~l~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~ 82 (187)
T 2p65_A 3 QALEKYSRDLTALARAGKLDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLV 82 (187)
T ss_dssp CCTTTTEEEHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEE
T ss_pred hHHHHHHHHHHHHHhccccchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEE
Confidence 45788999999999999999999999999999999988888899999999999999999999999877777766788999
Q ss_pred EeehhhhhccccccchHHHHHHHHHHHHHhc-CCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCCCeEEEEc
Q 003088 351 SLDMGLLMAGAKERGELEARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIAS 429 (849)
Q Consensus 351 ~l~~~~~~~~~~~~g~~e~~l~~l~~~~~~~-~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~~i~vI~a 429 (849)
.+++..+..+..+.+..+..+..++..+... ++.||||||+|.+.+.+.. .....++.+.|+..++++.+.+|++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~----~~~~~~~~~~l~~~~~~~~~~ii~~ 158 (187)
T 2p65_A 83 SLDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAV----AEGALDAGNILKPMLARGELRCIGA 158 (187)
T ss_dssp EECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSS----CTTSCCTHHHHHHHHHTTCSCEEEE
T ss_pred EEeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccc----cccchHHHHHHHHHHhcCCeeEEEe
Confidence 9998888776667788888888888888765 6789999999999754331 1224567888999999999999999
Q ss_pred cChHHHHHHhhccHHHHhccccEEecCCC
Q 003088 430 TTQDEHRTQFEKDKALARRFQPVLISEPS 458 (849)
Q Consensus 430 t~~~~~~~~~~~d~al~~Rf~~i~~~~ps 458 (849)
|+..++.....+++++.+||..|.++.|+
T Consensus 159 ~~~~~~~~~~~~~~~l~~R~~~i~i~~p~ 187 (187)
T 2p65_A 159 TTVSEYRQFIEKDKALERRFQQILVEQPS 187 (187)
T ss_dssp ECHHHHHHHTTTCHHHHHHEEEEECCSCC
T ss_pred cCHHHHHHHHhccHHHHHhcCcccCCCCC
Confidence 99998877778999999999999999885
No 18
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.87 E-value=1.2e-21 Score=219.18 Aligned_cols=204 Identities=21% Similarity=0.241 Sum_probs=157.7
Q ss_pred cCCCCccccHHHHHHHHHHHh-------------cCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEee
Q 003088 287 ELIDPVIGRETEIQRIIQILC-------------RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD 353 (849)
Q Consensus 287 ~~l~~iiG~~~~i~~l~~~l~-------------~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~ 353 (849)
.++++|.|.++.++.+.+.+. .+.+.++|||||||||||++|+++|.++ +++++.++
T Consensus 178 v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~----------~~~~~~v~ 247 (437)
T 4b4t_L 178 ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATI----------GANFIFSP 247 (437)
T ss_dssp SCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH----------TCEEEEEE
T ss_pred CChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHh----------CCCEEEEe
Confidence 368999999999988877551 2345789999999999999999999999 88999999
Q ss_pred hhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCc-cHHHHHHHhhhhc----CCCeEEEE
Q 003088 354 MGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGT-GLDISNLLKPSLG----RGELQCIA 428 (849)
Q Consensus 354 ~~~~~~~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~-~~~~~~~L~~~le----~~~i~vI~ 428 (849)
.+.+. .++.|+.+..++.+|..++...|+||||||+|.+++.+..+..+.+. .....+.|+..++ .+.++||+
T Consensus 248 ~s~l~--sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ 325 (437)
T 4b4t_L 248 ASGIV--DKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIM 325 (437)
T ss_dssp GGGTC--CSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEE
T ss_pred hhhhc--cccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEE
Confidence 98887 57899999999999999999999999999999998765432211111 1123344444443 46789999
Q ss_pred ccChHHHHHHhhccHHHHh--ccc-cEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhcccccCcchhh
Q 003088 429 STTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDK 505 (849)
Q Consensus 429 at~~~~~~~~~~~d~al~~--Rf~-~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~~~r~~p~~ 505 (849)
|||..+ .+|++|+| ||+ .|+|+.|+.++|.+||+.+..++... ++-.+..++..+.+|. +.+
T Consensus 326 ATNrp~-----~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~-----~d~dl~~lA~~t~G~s-----GAD 390 (437)
T 4b4t_L 326 ATNRPD-----TLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKT-----GEFDFEAAVKMSDGFN-----GAD 390 (437)
T ss_dssp EESSTT-----SSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBC-----SCCCHHHHHHTCCSCC-----HHH
T ss_pred ecCCch-----hhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCC-----cccCHHHHHHhCCCCC-----HHH
Confidence 999987 89999988 697 69999999999999998877633211 1122677788777764 466
Q ss_pred HHHHHHHHhhHH
Q 003088 506 AIDLVDEAGSRA 517 (849)
Q Consensus 506 ai~ll~~a~~~~ 517 (849)
...++.+|+..+
T Consensus 391 i~~l~~eA~~~a 402 (437)
T 4b4t_L 391 IRNCATEAGFFA 402 (437)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777888876554
No 19
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=99.87 E-value=1e-21 Score=188.43 Aligned_cols=135 Identities=16% Similarity=0.217 Sum_probs=122.5
Q ss_pred hhHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhcCCChHHHHHHCCCCHHHHHHHHHHHhhhC-CCCCCcchhccCCCC
Q 003088 85 FTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAVVSIWHST-NNQDTDDAAAQGKPF 163 (849)
Q Consensus 85 ft~~a~~~l~~A~~~A~~~~~~~v~~eHLLlaLl~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 163 (849)
||++++++|..|+++|+++||.+|+|||||+|||.++++.++|..+|++++.++..+...+++. |. ..
T Consensus 2 ~t~~~~~~l~~A~~~A~~~~~~~i~~eHlLlaLl~~~~~~~iL~~~g~~~~~l~~~l~~~l~~~~p~-----------~~ 70 (143)
T 1k6k_A 2 LNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPV-----------LP 70 (143)
T ss_dssp BCHHHHHHHHHHHHHHHHHTBSEECHHHHHHHHTTCHHHHHHHHHTTCCHHHHHHHHHHHHHHHSCB-----------CC
T ss_pred CCHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHcCchHHHHHHHcCCCHHHHHHHHHHHHHhcCCC-----------CC
Confidence 8999999999999999999999999999999999887788999999999999999999999875 42 11
Q ss_pred -C-CCCCCCCCHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHhhhcCCchhhHHHHhhcCCHHHHHHHHH
Q 003088 164 -S-SAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAV 230 (849)
Q Consensus 164 -~-~~~~~~~s~~~~~vl~~A~~~a~~~g~~~I~~ehlLlall~~~~~~a~~iL~~~gv~~~~l~~~~~ 230 (849)
+ ..+.++||+.++++|+.|..+|+.+|+.||+++|||+||++++++.+.++|+++|++.+.+++.+.
T Consensus 71 ~~~~~~~~~~s~~~~~~l~~A~~~A~~~~~~~i~~ehLLlall~~~~~~~~~iL~~~gi~~~~l~~~i~ 139 (143)
T 1k6k_A 71 ASEEERDTQPTLSFQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFIS 139 (143)
T ss_dssp SSCSCCSCEECHHHHHHHHHHHHHHHSSSCSCBCHHHHHHHHTTCTTSHHHHHHHHTTCCHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhCcCcHHHHHHHHcCCCHHHHHHHHH
Confidence 1 124689999999999999999999999999999999999998888789999999999999987664
No 20
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.86 E-value=3.9e-21 Score=214.78 Aligned_cols=203 Identities=19% Similarity=0.216 Sum_probs=158.4
Q ss_pred cCCCCccccHHHHHHHHHHHh-------------cCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEee
Q 003088 287 ELIDPVIGRETEIQRIIQILC-------------RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD 353 (849)
Q Consensus 287 ~~l~~iiG~~~~i~~l~~~l~-------------~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~ 353 (849)
.+++++.|.++.++.+.+.+. ...+.++|||||||||||++|+++|.++ +++++.++
T Consensus 169 v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~----------~~~~~~v~ 238 (428)
T 4b4t_K 169 VTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANST----------KAAFIRVN 238 (428)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHH----------TCEEEEEE
T ss_pred CCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCeEEEe
Confidence 368899999999998887552 1345679999999999999999999998 88999999
Q ss_pred hhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCC-ccHHHHHHHhhhhc----CCCeEEEE
Q 003088 354 MGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKG-TGLDISNLLKPSLG----RGELQCIA 428 (849)
Q Consensus 354 ~~~~~~~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~-~~~~~~~~L~~~le----~~~i~vI~ 428 (849)
.+.+. .++.|+.+..++.+|..++...|+|+||||+|.+++.+....++.+ ......+.|+..++ ..++.||+
T Consensus 239 ~~~l~--~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~ 316 (428)
T 4b4t_K 239 GSEFV--HKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIM 316 (428)
T ss_dssp GGGTC--CSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEE
T ss_pred cchhh--ccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEE
Confidence 98887 5679999999999999999999999999999999876543222111 11223444444443 56799999
Q ss_pred ccChHHHHHHhhccHHHHh--ccc-cEEec-CCCHHHHHHHHHHHHHHHHhhcCCccCHH-HHHHHHHhhhcccccCcch
Q 003088 429 STTQDEHRTQFEKDKALAR--RFQ-PVLIS-EPSQEDAVRILLGLREKYEAHHNCKFTLE-AINAAVHLSARYISDRYLP 503 (849)
Q Consensus 429 at~~~~~~~~~~~d~al~~--Rf~-~i~~~-~ps~~e~~~iL~~~~~~~~~~~~~~i~~~-~l~~~a~ls~~~~~~r~~p 503 (849)
|||..+ .+|++|+| ||+ .|+|+ .|+.++|..||+.+..+. .++++ .+..++..+.+|. +
T Consensus 317 aTN~~~-----~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~------~l~~~~dl~~lA~~t~G~s-----g 380 (428)
T 4b4t_K 317 ATNRAD-----TLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKM------SLAPEADLDSLIIRNDSLS-----G 380 (428)
T ss_dssp EESCSS-----SCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSS------CBCTTCCHHHHHHHTTTCC-----H
T ss_pred ecCChh-----hcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCC------CCCcccCHHHHHHHCCCCC-----H
Confidence 999987 89999999 998 69996 799999999998877632 22222 3677888887764 4
Q ss_pred hhHHHHHHHHhhHH
Q 003088 504 DKAIDLVDEAGSRA 517 (849)
Q Consensus 504 ~~ai~ll~~a~~~~ 517 (849)
.+...++.+|+..+
T Consensus 381 adi~~l~~eA~~~a 394 (428)
T 4b4t_K 381 AVIAAIMQEAGLRA 394 (428)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 67777888876554
No 21
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.86 E-value=3.2e-20 Score=202.82 Aligned_cols=205 Identities=21% Similarity=0.279 Sum_probs=162.0
Q ss_pred hhcCCCCccccHHHHHHHHHHHh------------cCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEe
Q 003088 285 SEELIDPVIGRETEIQRIIQILC------------RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSL 352 (849)
Q Consensus 285 ~~~~l~~iiG~~~~i~~l~~~l~------------~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l 352 (849)
.+..+++++|.++.++.+.+.+. .....++||+||||||||++|+++|+++ +..++.+
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~----------~~~~~~v 82 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA----------NSTFFSV 82 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH----------TCEEEEE
T ss_pred CCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH----------CCCEEEE
Confidence 34567899999999999988762 1234679999999999999999999987 7788999
Q ss_pred ehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhc-----CCCeEEE
Q 003088 353 DMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG-----RGELQCI 427 (849)
Q Consensus 353 ~~~~~~~~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le-----~~~i~vI 427 (849)
++..+. .++.|+.+..++.++..++...++||||||+|.+.+....+. ......+++.|+..++ ...+++|
T Consensus 83 ~~~~l~--~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~--~~~~~~~~~~ll~~l~~~~~~~~~v~vi 158 (322)
T 3eie_A 83 SSSDLV--SKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGE--SEASRRIKTELLVQMNGVGNDSQGVLVL 158 (322)
T ss_dssp EHHHHH--TTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC--------CCTHHHHHHHHHHHGGGGTSCCCEEEE
T ss_pred chHHHh--hcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCc--chHHHHHHHHHHHHhccccccCCceEEE
Confidence 888876 456889999999999999998899999999999976543211 1234455555555543 4679999
Q ss_pred EccChHHHHHHhhccHHHHhccc-cEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhcccccCcchhhH
Q 003088 428 ASTTQDEHRTQFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKA 506 (849)
Q Consensus 428 ~at~~~~~~~~~~~d~al~~Rf~-~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~~~r~~p~~a 506 (849)
++||..+ .+++++++||. .+.++.|+.++|.+||+.++. .....+++..+..++..+.+|. +...
T Consensus 159 ~atn~~~-----~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~----~~~~~~~~~~l~~la~~t~g~s-----g~di 224 (322)
T 3eie_A 159 GATNIPW-----QLDSAIRRRFERRIYIPLPDLAARTTMFEINVG----DTPCVLTKEDYRTLGAMTEGYS-----GSDI 224 (322)
T ss_dssp EEESCGG-----GSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHT----TCCCCCCHHHHHHHHHTTTTCC-----HHHH
T ss_pred EecCChh-----hCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhc----cCCCCCCHHHHHHHHHHcCCCC-----HHHH
Confidence 9999886 78999999997 699999999999999988765 5566789999999999888764 3566
Q ss_pred HHHHHHHhhHH
Q 003088 507 IDLVDEAGSRA 517 (849)
Q Consensus 507 i~ll~~a~~~~ 517 (849)
..++.+|...+
T Consensus 225 ~~l~~~a~~~a 235 (322)
T 3eie_A 225 AVVVKDALMQP 235 (322)
T ss_dssp HHHHHHHTTHH
T ss_pred HHHHHHHHHHH
Confidence 67777776554
No 22
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=99.85 E-value=5.2e-21 Score=187.52 Aligned_cols=141 Identities=14% Similarity=0.101 Sum_probs=116.8
Q ss_pred CCccchHHHhhHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhcCCC--hHHHHHHCCCCHHHHHHHHHHHhhhCCCCCC
Q 003088 76 IPISSVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDR--HPNGFLESGITIDKAREAVVSIWHSTNNQDT 153 (849)
Q Consensus 76 ~~~~~~ferft~~a~~~l~~A~~~A~~~~~~~v~~eHLLlaLl~~~~--~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~ 153 (849)
....+||+|||++|+++|..|+++|+++||++|+|||||+|||.+++ +.++|..+|+|++.++..+. .+++.|.
T Consensus 16 ~~l~~~~~kfT~~a~~aL~~A~~~A~~~~h~~I~~EHLLlaLL~~~~~~a~~iL~~~gvd~~~l~~~l~-~l~~~p~--- 91 (171)
T 3zri_A 16 IELPTLIAKLNAQSKLALEQAASLCIERQHPEVTLEHYLDVLLDNPLSDVRLVLKQAGLEVDQVKQAIA-STYSREQ--- 91 (171)
T ss_dssp CCHHHHHHHBCHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHTTCTTSHHHHHHHHTTCCHHHHHHHHH-HHSCCCC---
T ss_pred hhHHHHHHHcCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHH-HHhcCCC---
Confidence 45678999999999999999999999999999999999999999876 68899999999999999999 8887653
Q ss_pred cchhccCCCCCCCCCCCCCHHHHHHHHHHHHHHH-HcCCCcCCHHHHHHHhhhcCCc-hhhHHHHh-hcCCHHHHHHHHH
Q 003088 154 DDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSR-SRGYNFIAPEHIALGLFTVDDG-SAGRVLKR-LGVDVNHLAAVAV 230 (849)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~s~~~~~vl~~A~~~a~-~~g~~~I~~ehlLlall~~~~~-~a~~iL~~-~gv~~~~l~~~~~ 230 (849)
+.++.++||+.++++|+.|..+|+ ++|++||++||||+||++++.. ....+-.. ..++.+.+++...
T Consensus 92 ----------~~~~~~~~S~~l~~vL~~A~~~A~l~~gd~~I~teHLLLALl~~~~~~~~~~~~~~l~~i~~~~L~~~~~ 161 (171)
T 3zri_A 92 ----------VLDTYPAFSPLLVELLQEAWLLSSTELEQAELRSGAIFLAALTRADRYLSFKLISLFEGINRENLKKHFA 161 (171)
T ss_dssp ----------CCSSCCEECHHHHHHHHHHHHHHHTTTCCSSBCHHHHHHHHHHTHHHHSCHHHHHHTTTSCHHHHHHTHH
T ss_pred ----------CCCCCCCcCHHHHHHHHHHHHHHHHHcCCCEEcHHHHHHHHHhChhhhHHHHhhHHHHcCCHHHHHHHHH
Confidence 223568999999999999999999 9999999999999999976521 01111122 3466666665443
No 23
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.85 E-value=6.5e-20 Score=202.89 Aligned_cols=214 Identities=20% Similarity=0.249 Sum_probs=159.1
Q ss_pred hhhhHHHHhhcCCCCccccHHHHHHHHHHHh------------cCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccc
Q 003088 277 CVDLTARASEELIDPVIGRETEIQRIIQILC------------RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFL 344 (849)
Q Consensus 277 ~~~l~~~~~~~~l~~iiG~~~~i~~l~~~l~------------~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~ 344 (849)
...+.....+..+++++|+++.++.+.+.+. .....++||+||||||||++|+++|..+
T Consensus 38 ~~~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~--------- 108 (355)
T 2qp9_X 38 SSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA--------- 108 (355)
T ss_dssp ---------CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH---------
T ss_pred hhhhcccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh---------
Confidence 3445556667789999999999999888662 1234689999999999999999999998
Q ss_pred cCCeEEEeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhc----
Q 003088 345 LSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG---- 420 (849)
Q Consensus 345 ~~~~~~~l~~~~~~~~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le---- 420 (849)
+..++.+++..+.. ++.|+.+..++.++..+....++||||||+|.+.+....+ .......+.+.|+..++
T Consensus 109 -~~~~~~v~~~~l~~--~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~--~~~~~~~~~~~ll~~l~~~~~ 183 (355)
T 2qp9_X 109 -NSTFFSVSSSDLVS--KWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG--ESEASRRIKTELLVQMNGVGN 183 (355)
T ss_dssp -TCEEEEEEHHHHHS--CC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC--------CTHHHHHHHHHHHHHHHCC-
T ss_pred -CCCEEEeeHHHHhh--hhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCC--cchHHHHHHHHHHHHhhcccc
Confidence 67888888887763 4578888999999999988889999999999997653321 11223445566655554
Q ss_pred -CCCeEEEEccChHHHHHHhhccHHHHhccc-cEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhcccc
Q 003088 421 -RGELQCIASTTQDEHRTQFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498 (849)
Q Consensus 421 -~~~i~vI~at~~~~~~~~~~~d~al~~Rf~-~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~~ 498 (849)
...++||++||..+ .+++++++||+ .+.++.|+.++|.+||+.++. ..+..+++..+..++..+.+|.
T Consensus 184 ~~~~v~vI~atn~~~-----~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~----~~~~~~~~~~l~~la~~t~G~s- 253 (355)
T 2qp9_X 184 DSQGVLVLGATNIPW-----QLDSAIRRRFERRIYIPLPDLAARTTMFEINVG----DTPSVLTKEDYRTLGAMTEGYS- 253 (355)
T ss_dssp --CCEEEEEEESCGG-----GSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHT----TSCBCCCHHHHHHHHHHTTTCC-
T ss_pred cCCCeEEEeecCCcc-----cCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHh----hCCCCCCHHHHHHHHHHcCCCC-
Confidence 45799999999886 88999999996 699999999999999987765 4556678999999999988764
Q ss_pred cCcchhhHHHHHHHHhhHHH
Q 003088 499 DRYLPDKAIDLVDEAGSRAH 518 (849)
Q Consensus 499 ~r~~p~~ai~ll~~a~~~~~ 518 (849)
+.....++++|+..+.
T Consensus 254 ----g~dl~~l~~~A~~~a~ 269 (355)
T 2qp9_X 254 ----GSDIAVVVKDALMQPI 269 (355)
T ss_dssp ----HHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHH
Confidence 4566777887766543
No 24
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.85 E-value=3.8e-20 Score=207.74 Aligned_cols=210 Identities=21% Similarity=0.325 Sum_probs=158.0
Q ss_pred hhhHHHHhhcCCCCccccHHHHHHHHHHHh------------cCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCcccc
Q 003088 278 VDLTARASEELIDPVIGRETEIQRIIQILC------------RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLL 345 (849)
Q Consensus 278 ~~l~~~~~~~~l~~iiG~~~~i~~l~~~l~------------~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~ 345 (849)
..|.+++++..|++++|++..++.+.+++. .....++||+||||||||++|+++|.++
T Consensus 103 ~~~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~---------- 172 (389)
T 3vfd_A 103 NEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES---------- 172 (389)
T ss_dssp GTTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT----------
T ss_pred hhhhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh----------
Confidence 456777788889999999999999988762 1235789999999999999999999987
Q ss_pred CCeEEEeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhc-----
Q 003088 346 SKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG----- 420 (849)
Q Consensus 346 ~~~~~~l~~~~~~~~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le----- 420 (849)
+..++.+++..+.. .+.|+.+..++.++..+....++||||||||.|+.....+.. .....+++.|+..++
T Consensus 173 ~~~~~~v~~~~l~~--~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~--~~~~~~~~~ll~~l~~~~~~ 248 (389)
T 3vfd_A 173 NATFFNISAASLTS--KYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEH--DASRRLKTEFLIEFDGVQSA 248 (389)
T ss_dssp TCEEEEECSCCC---------CHHHHHHHHHHHHHSSSEEEEEETGGGGC----------CTHHHHHHHHHHHHHHHC--
T ss_pred cCcEEEeeHHHhhc--cccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccc--hHHHHHHHHHHHHhhccccc
Confidence 67888888877653 457788888999999999888899999999999765432111 224455555655554
Q ss_pred -CCCeEEEEccChHHHHHHhhccHHHHhccc-cEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhcccc
Q 003088 421 -RGELQCIASTTQDEHRTQFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498 (849)
Q Consensus 421 -~~~i~vI~at~~~~~~~~~~~d~al~~Rf~-~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~~ 498 (849)
...++||++||..+ .+++++++||. .|.|+.|+.+++.+||+.++. ..+..++++.+..++..+.+|..
T Consensus 249 ~~~~v~vI~atn~~~-----~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~----~~~~~l~~~~~~~la~~~~g~~~ 319 (389)
T 3vfd_A 249 GDDRVLVMGATNRPQ-----ELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLC----KQGSPLTQKELAQLARMTDGYSG 319 (389)
T ss_dssp ---CEEEEEEESCGG-----GCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHT----TSCCCSCHHHHHHHHHHTTTCCH
T ss_pred CCCCEEEEEecCCch-----hcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHH----hcCCCCCHHHHHHHHHHcCCCCH
Confidence 45689999999876 88999999997 699999999999999988776 56788999999999998888653
Q ss_pred cCcchhhHHHHHHHHhh
Q 003088 499 DRYLPDKAIDLVDEAGS 515 (849)
Q Consensus 499 ~r~~p~~ai~ll~~a~~ 515 (849)
.....++..|..
T Consensus 320 -----~~l~~L~~~a~~ 331 (389)
T 3vfd_A 320 -----SDLTALAKDAAL 331 (389)
T ss_dssp -----HHHHHHHHHHTT
T ss_pred -----HHHHHHHHHHHH
Confidence 344455555443
No 25
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.84 E-value=1.3e-19 Score=200.74 Aligned_cols=215 Identities=22% Similarity=0.323 Sum_probs=167.7
Q ss_pred HHhhhhhhHHHHhhcCCCCccccHHHHHHHHHHHh------------cCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCC
Q 003088 273 LEQFCVDLTARASEELIDPVIGRETEIQRIIQILC------------RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEV 340 (849)
Q Consensus 273 l~~~~~~l~~~~~~~~l~~iiG~~~~i~~l~~~l~------------~~~~~niLL~GppGtGKT~la~~la~~l~~~~~ 340 (849)
.+.....+..++.+..+++++|+++.++.+.+.+. .....++||+||||||||++|+++|..+
T Consensus 67 ~~~i~~~i~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~----- 141 (357)
T 3d8b_A 67 IELIMNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS----- 141 (357)
T ss_dssp HHHHHHHTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT-----
T ss_pred HHHHHhhcccCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc-----
Confidence 44444556666677889999999999999988763 2346789999999999999999999987
Q ss_pred CccccCCeEEEeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhc
Q 003088 341 PVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG 420 (849)
Q Consensus 341 p~~~~~~~~~~l~~~~~~~~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le 420 (849)
++.++.+++..+. ..+.|+.+..++.++..+....++||||||+|.|.+....+. ......+++.|+..++
T Consensus 142 -----~~~~~~i~~~~l~--~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~--~~~~~~~~~~lL~~l~ 212 (357)
T 3d8b_A 142 -----GATFFSISASSLT--SKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGE--HESSRRIKTEFLVQLD 212 (357)
T ss_dssp -----TCEEEEEEGGGGC--CSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC--------CHHHHHHHHHHHHHH
T ss_pred -----CCeEEEEehHHhh--ccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCc--chHHHHHHHHHHHHHh
Confidence 6788888888776 356788999999999999888889999999999976533211 1223345555555554
Q ss_pred ------CCCeEEEEccChHHHHHHhhccHHHHhccc-cEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhh
Q 003088 421 ------RGELQCIASTTQDEHRTQFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLS 493 (849)
Q Consensus 421 ------~~~i~vI~at~~~~~~~~~~~d~al~~Rf~-~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls 493 (849)
..++++|++||..+ .+++++++||. .+.++.|+.+++.+||..++. ..++.++++.+..++..+
T Consensus 213 ~~~~~~~~~v~vI~atn~~~-----~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~----~~~~~l~~~~l~~la~~t 283 (357)
T 3d8b_A 213 GATTSSEDRILVVGATNRPQ-----EIDEAARRRLVKRLYIPLPEASARKQIVINLMS----KEQCCLSEEEIEQIVQQS 283 (357)
T ss_dssp C----CCCCEEEEEEESCGG-----GBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHH----TSCBCCCHHHHHHHHHHT
T ss_pred cccccCCCCEEEEEecCChh-----hCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHh----hcCCCccHHHHHHHHHHc
Confidence 35789999999876 78999999998 699999999999999988776 557788999999999988
Q ss_pred hcccccCcchhhHHHHHHHHhh
Q 003088 494 ARYISDRYLPDKAIDLVDEAGS 515 (849)
Q Consensus 494 ~~~~~~r~~p~~ai~ll~~a~~ 515 (849)
.+|.. .....+++.|..
T Consensus 284 ~G~s~-----~dl~~l~~~a~~ 300 (357)
T 3d8b_A 284 DAFSG-----ADMTQLCREASL 300 (357)
T ss_dssp TTCCH-----HHHHHHHHHHHT
T ss_pred CCCCH-----HHHHHHHHHHHH
Confidence 87653 455566666543
No 26
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.83 E-value=2.2e-21 Score=215.82 Aligned_cols=214 Identities=24% Similarity=0.383 Sum_probs=136.2
Q ss_pred HHHHHHHHhccccccHHHHHHHHHHHHH----hhcCCCCC--CCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEe
Q 003088 620 LVGLEEQLKKRVIGQDEAVAAISRAVKR----SRVGLKDP--NRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRL 693 (849)
Q Consensus 620 ~~~l~~~l~~~i~Gq~~~i~~l~~~l~~----~~~g~~~~--~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i 693 (849)
+..+...|.+.|+||+.+++.+..++.. .+.+.... ..+..++||+||||||||++|++||+.+ +.+|+.+
T Consensus 6 ~~~l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~---~~~~~~~ 82 (363)
T 3hws_A 6 PHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL---DVPFTMA 82 (363)
T ss_dssp HHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT---TCCEEEE
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc---CCCEEEe
Confidence 4456777778899999999999888843 22222211 2244579999999999999999999997 6789999
Q ss_pred eccccccccccccccCCCCCccccccCcchhHHHHh-------CCCeEEEEeCccccCHH--------------HHHHHH
Q 003088 694 DMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRR-------RPFTLLLLDEIEKAHPD--------------IFNILL 752 (849)
Q Consensus 694 ~~~~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~i~~-------~~~~vl~lDEid~l~~~--------------~~~~Ll 752 (849)
+|+.+.. .+|+|+...+.+..++.. +.++||||||||++++. +|+.|+
T Consensus 83 ~~~~l~~-----------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll 151 (363)
T 3hws_A 83 DATTLTE-----------AGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALL 151 (363)
T ss_dssp EHHHHTT-----------CHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHH
T ss_pred chHHhcc-----------cccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHH
Confidence 9987643 235665544555555443 35689999999999877 999999
Q ss_pred HHhhcCee---ecCCCceeecC--------CeEEEEecCC-Cchhhhcc---cCCccccccccCCc---ccHHhHHH-HH
Q 003088 753 QVFEDGHL---TDSHGRRVSFK--------NALIVMTSNV-GSTTIAKG---RHGSIGFLLEDNES---TSYAGMKT-LV 813 (849)
Q Consensus 753 ~~le~g~~---~~~~g~~~~~~--------~~~iI~tsn~-~~~~l~~~---~~~~~gf~~~~~~~---~~~~~~~~-~~ 813 (849)
++|| |.+ .+.+|+.+++. |.+||+++|. +.+.+.+. ....+||....... .....+.. ..
T Consensus 152 ~~le-g~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~ 230 (363)
T 3hws_A 152 KLIE-GTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVE 230 (363)
T ss_dssp HHHH-CC----------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCC
T ss_pred HHhc-CceeeccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCC
Confidence 9999 543 33345444444 5555555554 66655443 11467887543221 12222322 22
Q ss_pred HHHHHhh-CChHHhhccccEEEcCCCCHHHHccccC
Q 003088 814 VEELKAY-FRPELLNRIDEVVVFRSLEKAQVCQLPL 848 (849)
Q Consensus 814 ~~~l~~~-~~pell~R~d~~i~f~pl~~~~~~~I~~ 848 (849)
...+.++ |+|+|++|||.++.|.|++++++.+|++
T Consensus 231 ~~~l~~~~~~~~l~~R~~~~~~~~pl~~~~~~~I~~ 266 (363)
T 3hws_A 231 PEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILK 266 (363)
T ss_dssp HHHHHHHTCCHHHHTTCCEEEECCCCCHHHHHHHHH
T ss_pred HHHHHHcCCCHHHhcccCeeeecCCCCHHHHHHHHH
Confidence 3444444 9999999999999999999999998875
No 27
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.83 E-value=1.2e-19 Score=197.95 Aligned_cols=204 Identities=20% Similarity=0.228 Sum_probs=159.7
Q ss_pred cCCCCccccHHHHHHHHHHHh------------cCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeeh
Q 003088 287 ELIDPVIGRETEIQRIIQILC------------RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM 354 (849)
Q Consensus 287 ~~l~~iiG~~~~i~~l~~~l~------------~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~ 354 (849)
.++++++|.++.++.+.+.+. .....++||+||||||||++|+++|.++. +..++.++.
T Consensus 9 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~---------~~~~~~i~~ 79 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN---------NSTFFSISS 79 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT---------SCEEEEEEC
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC---------CCcEEEEEh
Confidence 467899999999998887662 12346799999999999999999999872 456777777
Q ss_pred hhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhc-----CCCeEEEEc
Q 003088 355 GLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG-----RGELQCIAS 429 (849)
Q Consensus 355 ~~~~~~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le-----~~~i~vI~a 429 (849)
..+. .++.|+.+..++.++..++...++||||||+|.+.+...... .+....+.+.|...++ ..++++|++
T Consensus 80 ~~l~--~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~--~~~~~~~~~~ll~~ld~~~~~~~~v~vI~a 155 (322)
T 1xwi_A 80 SDLV--SKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENE--SEAARRIKTEFLVQMQGVGVDNDGILVLGA 155 (322)
T ss_dssp CSSC--CSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCC--TTHHHHHHHHHHHHHHCSSSCCTTEEEEEE
T ss_pred HHHH--hhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhcccccccc--chHHHHHHHHHHHHHhcccccCCCEEEEEe
Confidence 6665 356788899999999999988899999999999987544321 1223344555555443 467999999
Q ss_pred cChHHHHHHhhccHHHHhccc-cEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhcccccCcchhhHHH
Q 003088 430 TTQDEHRTQFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAID 508 (849)
Q Consensus 430 t~~~~~~~~~~~d~al~~Rf~-~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~~~r~~p~~ai~ 508 (849)
||..+ .++++++|||+ .+.++.|+.++|.+||+.+.. ..+..+++..+..++..+.+|.. .+...
T Consensus 156 tn~~~-----~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~----~~~~~l~~~~l~~la~~t~G~sg-----adl~~ 221 (322)
T 1xwi_A 156 TNIPW-----VLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLG----TTQNSLTEADFRELGRKTDGYSG-----ADISI 221 (322)
T ss_dssp ESCTT-----TSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHT----TCCBCCCHHHHHHHHHTCTTCCH-----HHHHH
T ss_pred cCCcc-----cCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHh----cCCCCCCHHHHHHHHHHcCCCCH-----HHHHH
Confidence 99886 78999999996 699999999999999987765 45567789999999998887643 56667
Q ss_pred HHHHHhhHH
Q 003088 509 LVDEAGSRA 517 (849)
Q Consensus 509 ll~~a~~~~ 517 (849)
++++|+..+
T Consensus 222 l~~~A~~~a 230 (322)
T 1xwi_A 222 IVRDALMQP 230 (322)
T ss_dssp HHHHHHTHH
T ss_pred HHHHHHHHH
Confidence 777776554
No 28
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.82 E-value=5.7e-19 Score=190.58 Aligned_cols=210 Identities=20% Similarity=0.313 Sum_probs=159.4
Q ss_pred hhHHHHhhcCCCCccccHHHHHHHHHHHhc------------CCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccC
Q 003088 279 DLTARASEELIDPVIGRETEIQRIIQILCR------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLS 346 (849)
Q Consensus 279 ~l~~~~~~~~l~~iiG~~~~i~~l~~~l~~------------~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~ 346 (849)
.+...+.+..+++++|+++.++.+.+.+.. ....++||+||||||||++|+++|..+ +
T Consensus 10 ~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~----------~ 79 (297)
T 3b9p_A 10 EIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC----------S 79 (297)
T ss_dssp TTBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT----------T
T ss_pred HhccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh----------C
Confidence 344455667789999999999998887632 235689999999999999999999987 6
Q ss_pred CeEEEeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcC-----
Q 003088 347 KRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR----- 421 (849)
Q Consensus 347 ~~~~~l~~~~~~~~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~----- 421 (849)
..++.+++..+. ..+.|+.+..++.++..+....++||||||+|.+.+...... .+....+++.|...++.
T Consensus 80 ~~~~~i~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~--~~~~~~~~~~ll~~l~~~~~~~ 155 (297)
T 3b9p_A 80 ATFLNISAASLT--SKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSE--HEASRRLKTEFLVEFDGLPGNP 155 (297)
T ss_dssp CEEEEEESTTTS--SSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-------CCSHHHHHHHHHHHHHCC---
T ss_pred CCeEEeeHHHHh--hcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCc--chHHHHHHHHHHHHHhcccccC
Confidence 677888877665 345678888899999999888899999999999976543211 12234455555544442
Q ss_pred --CCeEEEEccChHHHHHHhhccHHHHhccc-cEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhcccc
Q 003088 422 --GELQCIASTTQDEHRTQFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498 (849)
Q Consensus 422 --~~i~vI~at~~~~~~~~~~~d~al~~Rf~-~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~~ 498 (849)
..+++|++||..+ .+++++.+||. .+.++.|+.+++..||+.+.. ..+..++++.+..++..+.+|..
T Consensus 156 ~~~~v~vi~~tn~~~-----~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~----~~~~~~~~~~~~~la~~~~g~~~ 226 (297)
T 3b9p_A 156 DGDRIVVLAATNRPQ-----ELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQ----KQGSPLDTEALRRLAKITDGYSG 226 (297)
T ss_dssp ---CEEEEEEESCGG-----GBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHG----GGSCCSCHHHHHHHHHHTTTCCH
T ss_pred CCCcEEEEeecCChh-----hCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHH----hcCCCCCHHHHHHHHHHcCCCCH
Confidence 4688999999886 78999999996 799999999999999987765 45667899999999998877643
Q ss_pred cCcchhhHHHHHHHHhhH
Q 003088 499 DRYLPDKAIDLVDEAGSR 516 (849)
Q Consensus 499 ~r~~p~~ai~ll~~a~~~ 516 (849)
.....+++.|+..
T Consensus 227 -----~~l~~l~~~a~~~ 239 (297)
T 3b9p_A 227 -----SDLTALAKDAALE 239 (297)
T ss_dssp -----HHHHHHHHHHTTH
T ss_pred -----HHHHHHHHHHHHH
Confidence 3444666666543
No 29
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.81 E-value=1.8e-19 Score=204.63 Aligned_cols=203 Identities=23% Similarity=0.286 Sum_probs=156.4
Q ss_pred hhhHHHHhhcCCCCccccHHHH---HHHHHHHhcCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeeh
Q 003088 278 VDLTARASEELIDPVIGRETEI---QRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM 354 (849)
Q Consensus 278 ~~l~~~~~~~~l~~iiG~~~~i---~~l~~~l~~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~ 354 (849)
.+|.++++|.+|++++|+++.+ ..+...+.....+++||+||||||||++|+.|++.+ +..++.++.
T Consensus 14 ~pla~r~rP~~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~----------~~~f~~l~a 83 (447)
T 3pvs_A 14 QPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA----------NADVERISA 83 (447)
T ss_dssp CCHHHHTCCCSTTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT----------TCEEEEEET
T ss_pred CChHHHhCCCCHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh----------CCCeEEEEe
Confidence 5899999999999999999999 778888888887899999999999999999999988 566666654
Q ss_pred hhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCCCeEEEEccChHH
Q 003088 355 GLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDE 434 (849)
Q Consensus 355 ~~~~~~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~~i~vI~at~~~~ 434 (849)
... + ..++...+.........+.+.||||||+|.+. ...++.|++.++++.+++|++|+.+.
T Consensus 84 ~~~--~---~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~-------------~~~q~~LL~~le~~~v~lI~att~n~ 145 (447)
T 3pvs_A 84 VTS--G---VKEIREAIERARQNRNAGRRTILFVDEVHRFN-------------KSQQDAFLPHIEDGTITFIGATTENP 145 (447)
T ss_dssp TTC--C---HHHHHHHHHHHHHHHHTTCCEEEEEETTTCC-------------------CCHHHHHTTSCEEEEEESSCG
T ss_pred ccC--C---HHHHHHHHHHHHHhhhcCCCcEEEEeChhhhC-------------HHHHHHHHHHHhcCceEEEecCCCCc
Confidence 221 1 12233333332222233567899999999992 23467788999999999999998765
Q ss_pred HHHHhhccHHHHhccccEEecCCCHHHHHHHHHHHHHHHHhh---cCCccCHHHHHHHHHhhhcccccCcchhhHHHHHH
Q 003088 435 HRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAH---HNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVD 511 (849)
Q Consensus 435 ~~~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL~~~~~~~~~~---~~~~i~~~~l~~~a~ls~~~~~~r~~p~~ai~ll~ 511 (849)
.+.++++|.+||..+.|++|+.+++..++...+..+... .++.++++++..++..+.+.+ ..++.+++
T Consensus 146 ---~~~l~~aL~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~------R~lln~Le 216 (447)
T 3pvs_A 146 ---SFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDA------RRALNTLE 216 (447)
T ss_dssp ---GGSSCHHHHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCH------HHHHHHHH
T ss_pred ---ccccCHHHhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCH------HHHHHHHH
Confidence 357899999999999999999999999999887743322 457899999999999877644 47788888
Q ss_pred HHhhHH
Q 003088 512 EAGSRA 517 (849)
Q Consensus 512 ~a~~~~ 517 (849)
.++..+
T Consensus 217 ~a~~~a 222 (447)
T 3pvs_A 217 MMADMA 222 (447)
T ss_dssp HHHHHS
T ss_pred HHHHhc
Confidence 876654
No 30
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.79 E-value=6e-19 Score=200.91 Aligned_cols=208 Identities=19% Similarity=0.227 Sum_probs=156.6
Q ss_pred HHhhcCCCCccccHHHHHHHHHHHh------------cCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEE
Q 003088 283 RASEELIDPVIGRETEIQRIIQILC------------RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIM 350 (849)
Q Consensus 283 ~~~~~~l~~iiG~~~~i~~l~~~l~------------~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~ 350 (849)
...+..|++++|.++.++.+.+.+. .....++||+||||||||++|+++|..+. +..++
T Consensus 127 ~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~---------~~~~~ 197 (444)
T 2zan_A 127 ERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN---------NSTFF 197 (444)
T ss_dssp CCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCC---------SSEEE
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcC---------CCCEE
Confidence 3445678999999999999888662 23446899999999999999999999872 45677
Q ss_pred EeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhc-----CCCeE
Q 003088 351 SLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG-----RGELQ 425 (849)
Q Consensus 351 ~l~~~~~~~~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le-----~~~i~ 425 (849)
.+++..+. .++.|+.+..++.++..+....++||||||+|.+.+..... ..+....+.+.|+..++ ...++
T Consensus 198 ~v~~~~l~--~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~--~~~~~~~~~~~lL~~l~~~~~~~~~v~ 273 (444)
T 2zan_A 198 SISSSDLV--SKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN--ESEAARRIKTEFLVQMQGVGVDNDGIL 273 (444)
T ss_dssp EECCC-----------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCC--CCGGGHHHHHHHHTTTTCSSCCCSSCE
T ss_pred EEeHHHHH--hhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCc--cccHHHHHHHHHHHHHhCcccCCCCEE
Confidence 77776665 34566677778899999988889999999999997654332 11234456666666654 46799
Q ss_pred EEEccChHHHHHHhhccHHHHhccc-cEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhcccccCcchh
Q 003088 426 CIASTTQDEHRTQFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPD 504 (849)
Q Consensus 426 vI~at~~~~~~~~~~~d~al~~Rf~-~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~~~r~~p~ 504 (849)
||++||... .++++++|||+ .+.++.|+.+++..||+.++. ..+..+++..+..++..+.+|.. .
T Consensus 274 vI~atn~~~-----~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~----~~~~~l~~~~l~~la~~t~G~sg-----a 339 (444)
T 2zan_A 274 VLGATNIPW-----VLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLG----STQNSLTEADFQELGRKTDGYSG-----A 339 (444)
T ss_dssp EEEEESCGG-----GSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHT----TSCEECCHHHHHHHHHHTTTCCH-----H
T ss_pred EEecCCCcc-----ccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHh----cCCCCCCHHHHHHHHHHcCCCCH-----H
Confidence 999999886 78999999997 799999999999999987765 45566789999999999887653 5
Q ss_pred hHHHHHHHHhhHH
Q 003088 505 KAIDLVDEAGSRA 517 (849)
Q Consensus 505 ~ai~ll~~a~~~~ 517 (849)
....++.+|+..+
T Consensus 340 dl~~l~~~a~~~a 352 (444)
T 2zan_A 340 DISIIVRDALMQP 352 (444)
T ss_dssp HHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHH
Confidence 6667777776554
No 31
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.79 E-value=2.4e-18 Score=186.59 Aligned_cols=214 Identities=18% Similarity=0.211 Sum_probs=162.0
Q ss_pred CC-CccccHHHHHHHHHHHh---------------cCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEe
Q 003088 289 ID-PVIGRETEIQRIIQILC---------------RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSL 352 (849)
Q Consensus 289 l~-~iiG~~~~i~~l~~~l~---------------~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l 352 (849)
++ +++|+++.++.+.+++. .....++||+||||||||++|+++|+.+..... ....+++.+
T Consensus 29 l~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~---~~~~~~~~~ 105 (309)
T 3syl_A 29 LDRELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGY---VRKGHLVSV 105 (309)
T ss_dssp HHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTS---SSSCCEEEE
T ss_pred HHHHccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCC---cCCCcEEEE
Confidence 44 69999999998887653 334457999999999999999999999865422 224567888
Q ss_pred ehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCC--CeEEEEcc
Q 003088 353 DMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG--ELQCIAST 430 (849)
Q Consensus 353 ~~~~~~~~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~--~i~vI~at 430 (849)
+...+. ..+.|..+..+..++..+ .++||||||+|.+.+.+.. .....++++.|...++.+ ++++|++|
T Consensus 106 ~~~~l~--~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~----~~~~~~~~~~Ll~~l~~~~~~~~~i~~~ 176 (309)
T 3syl_A 106 TRDDLV--GQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNE----RDYGQEAIEILLQVMENNRDDLVVILAG 176 (309)
T ss_dssp CGGGTC--CSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC-------CCTHHHHHHHHHHHHHCTTTCEEEEEE
T ss_pred cHHHhh--hhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCc----ccccHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 877765 345677777777777765 3569999999999754322 123567888888888754 78999999
Q ss_pred ChHHHHHHhhccHHHHhcc-ccEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhcccccCc--chhhHH
Q 003088 431 TQDEHRTQFEKDKALARRF-QPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRY--LPDKAI 507 (849)
Q Consensus 431 ~~~~~~~~~~~d~al~~Rf-~~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~~~r~--~p~~ai 507 (849)
+...+..++.++++|++|| ..|.|++|+.+++.+|++.++. ..++.++++++..++..+.+...... ....+.
T Consensus 177 ~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~----~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~ 252 (309)
T 3syl_A 177 YADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLD----DQNYQMTPEAETALRAYIGLRRNQPHFANARSIR 252 (309)
T ss_dssp CHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHH----HTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHH
T ss_pred ChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHH
Confidence 9988778888899999999 5899999999999999988877 46788999999998887664322221 234666
Q ss_pred HHHHHHhhHHH
Q 003088 508 DLVDEAGSRAH 518 (849)
Q Consensus 508 ~ll~~a~~~~~ 518 (849)
.+++.++....
T Consensus 253 ~~l~~a~~~~~ 263 (309)
T 3syl_A 253 NALDRARLRQA 263 (309)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777765443
No 32
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.79 E-value=3.7e-18 Score=183.02 Aligned_cols=203 Identities=22% Similarity=0.304 Sum_probs=153.1
Q ss_pred cCCCCccccHHHHHHHHHHHhc-------------CCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEee
Q 003088 287 ELIDPVIGRETEIQRIIQILCR-------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD 353 (849)
Q Consensus 287 ~~l~~iiG~~~~i~~l~~~l~~-------------~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~ 353 (849)
..+++++|+++.++.+.+.+.. ....++||+||||||||++|+++|..+ +.+++.++
T Consensus 14 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~----------~~~~~~v~ 83 (285)
T 3h4m_A 14 VRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET----------NATFIRVV 83 (285)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT----------TCEEEEEE
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh----------CCCEEEEe
Confidence 3578899999999998887643 456789999999999999999999987 67788888
Q ss_pred hhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhc-------CCCeEE
Q 003088 354 MGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG-------RGELQC 426 (849)
Q Consensus 354 ~~~~~~~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le-------~~~i~v 426 (849)
+..+. ..+.|+.+..++.++..+....++||||||+|.+.+....... ++..+.+..|..++. .+.+++
T Consensus 84 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~--~~~~~~~~~l~~ll~~~~~~~~~~~~~v 159 (285)
T 3h4m_A 84 GSELV--KKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALT--GGDREVQRTLMQLLAEMDGFDARGDVKI 159 (285)
T ss_dssp GGGGC--CCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCC--GGGGHHHHHHHHHHHHHHTTCSSSSEEE
T ss_pred hHHHH--HhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccC--CccHHHHHHHHHHHHHhhCCCCCCCEEE
Confidence 77765 3457888999999999999888999999999999865433111 123344444444332 457999
Q ss_pred EEccChHHHHHHhhccHHHHh--ccc-cEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhcccccCcch
Q 003088 427 IASTTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLP 503 (849)
Q Consensus 427 I~at~~~~~~~~~~~d~al~~--Rf~-~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~~~r~~p 503 (849)
|+|||..+ .+++++.+ ||. .+.++.|+.+++.+||+..... ..+. .+..+..++..+.+|. +
T Consensus 160 I~ttn~~~-----~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~----~~~~-~~~~~~~l~~~~~g~~-----~ 224 (285)
T 3h4m_A 160 IGATNRPD-----ILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRK----MNLA-EDVNLEEIAKMTEGCV-----G 224 (285)
T ss_dssp EEECSCGG-----GBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTT----SCBC-TTCCHHHHHHHCTTCC-----H
T ss_pred EEeCCCch-----hcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhc----CCCC-CcCCHHHHHHHcCCCC-----H
Confidence 99999886 78999999 997 7999999999999999876552 2222 2223566777776653 4
Q ss_pred hhHHHHHHHHhhHHH
Q 003088 504 DKAIDLVDEAGSRAH 518 (849)
Q Consensus 504 ~~ai~ll~~a~~~~~ 518 (849)
.....+++.|...+.
T Consensus 225 ~~i~~l~~~a~~~a~ 239 (285)
T 3h4m_A 225 AELKAICTEAGMNAI 239 (285)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 566677777766554
No 33
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.78 E-value=1.4e-19 Score=216.03 Aligned_cols=204 Identities=18% Similarity=0.264 Sum_probs=138.0
Q ss_pred CCCCccccHHHHHHHHHHHhc-------------CCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeeh
Q 003088 288 LIDPVIGRETEIQRIIQILCR-------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM 354 (849)
Q Consensus 288 ~l~~iiG~~~~i~~l~~~l~~-------------~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~ 354 (849)
.++++.|.++..+.|.+.+.- ....++|||||||||||.+|+++|.++ +..++.++.
T Consensus 475 ~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~----------~~~f~~v~~ 544 (806)
T 3cf2_A 475 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISIKG 544 (806)
T ss_dssp CSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTT----------TCEEEECCH
T ss_pred CHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHh----------CCceEEecc
Confidence 467899999988888876521 234689999999999999999999998 788999998
Q ss_pred hhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCC-CCccHHHHHHHhhhhc----CCCeEEEEc
Q 003088 355 GLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGN-KGTGLDISNLLKPSLG----RGELQCIAS 429 (849)
Q Consensus 355 ~~~~~~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~-~~~~~~~~~~L~~~le----~~~i~vI~a 429 (849)
+.++ .+|.|+.|..++.+|+.++...|+||||||+|.+++.++.+.++ .+....+.+.|+..|+ ..+++||+|
T Consensus 545 ~~l~--s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~a 622 (806)
T 3cf2_A 545 PELL--TMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGA 622 (806)
T ss_dssp HHHH--TTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC
T ss_pred chhh--ccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEe
Confidence 8888 57899999999999999999999999999999998765432111 1223346677766665 456899999
Q ss_pred cChHHHHHHhhccHHHHh--ccc-cEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhcccccCcchhhH
Q 003088 430 TTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKA 506 (849)
Q Consensus 430 t~~~~~~~~~~~d~al~~--Rf~-~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~~~r~~p~~a 506 (849)
||.++ .+|++++| ||+ .|+|+.|+.++|.+||+.+.++. .+. .+-.+..+++.+.+|.. .+.
T Consensus 623 TN~p~-----~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~----~~~-~~~dl~~la~~t~g~SG-----adi 687 (806)
T 3cf2_A 623 TNRPD-----IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKS----PVA-KDVDLEFLAKMTNGFSG-----ADL 687 (806)
T ss_dssp -CCSS-----SSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC------C-CC---------------------CH
T ss_pred CCCch-----hCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCC----CCC-CCCCHHHHHHhCCCCCH-----HHH
Confidence 99987 89999999 998 69999999999999997665421 111 12236677777777643 567
Q ss_pred HHHHHHHhhHHH
Q 003088 507 IDLVDEAGSRAH 518 (849)
Q Consensus 507 i~ll~~a~~~~~ 518 (849)
..++.+|+..+.
T Consensus 688 ~~l~~~A~~~a~ 699 (806)
T 3cf2_A 688 TEICQRACKLAI 699 (806)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 778888866553
No 34
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.78 E-value=6.1e-19 Score=190.77 Aligned_cols=181 Identities=20% Similarity=0.303 Sum_probs=138.6
Q ss_pred ccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeecccccccccccccc
Q 003088 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLI 708 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~ 708 (849)
+.++|++.++..+...+..... ...++||+||||||||++|++||+.+...+.+|+.++|+.+......+.+|
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~-------~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~~lf 74 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAP-------SDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESELF 74 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCS-------TTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHHHHT
T ss_pred CCcEECCHHHHHHHHHHHHHhC-------CCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHHHhc
Confidence 4689999999999988887531 123499999999999999999999887778899999999988766677888
Q ss_pred CCCCC-ccccccCcchhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCchhhh
Q 003088 709 GSPPG-YVGYEEGGLLTEAIRRRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIA 787 (849)
Q Consensus 709 g~~~g-~vg~~~~~~l~~~i~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~ 787 (849)
|...| +.|... ...+.+..+.+++||||||+.+++..|..|+++|+++.+...++......+++||++||.++..+.
T Consensus 75 g~~~g~~tg~~~--~~~g~~~~a~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~~~v 152 (304)
T 1ojl_A 75 GHEKGAFTGADK--RREGRFVEADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEV 152 (304)
T ss_dssp CCCSSCCC---C--CCCCHHHHHTTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHHHHH
T ss_pred CccccccCchhh--hhcCHHHhcCCCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccHHHHH
Confidence 87544 233221 122344455678999999999999999999999999988765555444568999999998765544
Q ss_pred cccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccc-cEEEcCCCC--HHHHcccc
Q 003088 788 KGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRID-EVVVFRSLE--KAQVCQLP 847 (849)
Q Consensus 788 ~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d-~~i~f~pl~--~~~~~~I~ 847 (849)
..+ .|+++|++||+ ..|.++|+. .+++..++
T Consensus 153 ~~g-----------------------------~fr~~L~~Rl~~~~i~lPpL~eR~edi~~l~ 186 (304)
T 1ojl_A 153 SAG-----------------------------RFRQDLYYRLNVVAIEMPSLRQRREDIPLLA 186 (304)
T ss_dssp HHT-----------------------------SSCHHHHHHHSSEEEECCCSGGGGGGHHHHH
T ss_pred HhC-----------------------------CcHHHHHhhcCeeEEeccCHHHhHhhHHHHH
Confidence 333 28999999996 458899998 45655443
No 35
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.78 E-value=8.5e-17 Score=195.72 Aligned_cols=178 Identities=18% Similarity=0.271 Sum_probs=128.7
Q ss_pred CCccccHHHHHHHHHHHhcCC-------C--CCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhcc
Q 003088 290 DPVIGRETEIQRIIQILCRRT-------K--NNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAG 360 (849)
Q Consensus 290 ~~iiG~~~~i~~l~~~l~~~~-------~--~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~~ 360 (849)
+.++|+++.++.+...+.+.. + .++||+||||||||++|+++|+.+... +.+++.++++.+...
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~-------~~~~i~i~~s~~~~~ 563 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGD-------EESMIRIDMSEYMEK 563 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSC-------TTCEEEEEGGGGCSS
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC-------CcceEEEechhcccc
Confidence 358999999988888775422 1 269999999999999999999998543 567888898887643
Q ss_pred ccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCCC-------------eEEE
Q 003088 361 AKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGE-------------LQCI 427 (849)
Q Consensus 361 ~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~~-------------i~vI 427 (849)
.... ...+...++...++||||||++.+ ..++++.|+.+++.+. +++|
T Consensus 564 ~~~~------~~~l~~~~~~~~~~vl~lDEi~~~-------------~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI 624 (758)
T 3pxi_A 564 HSTS------GGQLTEKVRRKPYSVVLLDAIEKA-------------HPDVFNILLQVLEDGRLTDSKGRTVDFRNTILI 624 (758)
T ss_dssp CCCC---------CHHHHHHCSSSEEEEECGGGS-------------CHHHHHHHHHHHHHSBCC-----CCBCTTCEEE
T ss_pred cccc------cchhhHHHHhCCCeEEEEeCcccc-------------CHHHHHHHHHHhccCeEEcCCCCEeccCCeEEE
Confidence 3221 112233444556789999999988 5678999999998643 5889
Q ss_pred EccCh-----HHHHH--HhhccHHHHhccc-cEEecCCCHHHHHHHHHHHHHHHHhh-----cCCccCHHHHHHHHHhh
Q 003088 428 ASTTQ-----DEHRT--QFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEAH-----HNCKFTLEAINAAVHLS 493 (849)
Q Consensus 428 ~at~~-----~~~~~--~~~~d~al~~Rf~-~i~~~~ps~~e~~~iL~~~~~~~~~~-----~~~~i~~~~l~~~a~ls 493 (849)
+|||. ..+.. .-.+.|.|.+||. .|.|++|+.+++.+|+..++.++... ..+.++++++..++..+
T Consensus 625 ~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~ 703 (758)
T 3pxi_A 625 MTSNVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEG 703 (758)
T ss_dssp EEESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGG
T ss_pred EeCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhC
Confidence 99983 11111 0126799999995 79999999999999999877655322 34678999999887654
No 36
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.77 E-value=3.1e-17 Score=180.32 Aligned_cols=195 Identities=22% Similarity=0.276 Sum_probs=143.4
Q ss_pred hhhhhhHHHHhhcCCCCccccHHHHHHHHHHHhc-----CCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeE
Q 003088 275 QFCVDLTARASEELIDPVIGRETEIQRIIQILCR-----RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRI 349 (849)
Q Consensus 275 ~~~~~l~~~~~~~~l~~iiG~~~~i~~l~~~l~~-----~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~ 349 (849)
....+|.++++|..|++++|++..++.+..++.. ....++||+||||||||++|+++++.+ +..+
T Consensus 14 ~~~~~~~~~~~p~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~----------~~~~ 83 (338)
T 3pfi_A 14 SFDETYETSLRPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEM----------SANI 83 (338)
T ss_dssp ---------CCCCSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHT----------TCCE
T ss_pred chhhhhhhccCCCCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHh----------CCCe
Confidence 3445788999999999999999999998887754 345789999999999999999999987 5567
Q ss_pred EEeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCCC------
Q 003088 350 MSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGE------ 423 (849)
Q Consensus 350 ~~l~~~~~~~~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~~------ 423 (849)
+.+++..+. ..+.+ ..++.. ...+++|||||+|.+ ..+.++.|+..++.+.
T Consensus 84 ~~~~~~~~~----~~~~~----~~~~~~--~~~~~vl~lDEi~~l-------------~~~~~~~Ll~~l~~~~~~~~~~ 140 (338)
T 3pfi_A 84 KTTAAPMIE----KSGDL----AAILTN--LSEGDILFIDEIHRL-------------SPAIEEVLYPAMEDYRLDIIIG 140 (338)
T ss_dssp EEEEGGGCC----SHHHH----HHHHHT--CCTTCEEEEETGGGC-------------CHHHHHHHHHHHHTSCC-----
T ss_pred EEecchhcc----chhHH----HHHHHh--ccCCCEEEEechhhc-------------CHHHHHHHHHHHHhccchhhcc
Confidence 777665432 11222 222222 245689999999999 3566778877777543
Q ss_pred --------------eEEEEccChHHHHHHhhccHHHHhcc-ccEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHH
Q 003088 424 --------------LQCIASTTQDEHRTQFEKDKALARRF-QPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINA 488 (849)
Q Consensus 424 --------------i~vI~at~~~~~~~~~~~d~al~~Rf-~~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~ 488 (849)
+++|++||... .++++|++|| ..+.|++|+.+++..++..... ..++.++++++..
T Consensus 141 ~~~~~~~~~~~~~~~~~i~atn~~~-----~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~----~~~~~~~~~~~~~ 211 (338)
T 3pfi_A 141 SGPAAQTIKIDLPKFTLIGATTRAG-----MLSNPLRDRFGMQFRLEFYKDSELALILQKAAL----KLNKTCEEKAALE 211 (338)
T ss_dssp ----CCCCCCCCCCCEEEEEESCGG-----GSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHH----HTTCEECHHHHHH
T ss_pred cCccccceecCCCCeEEEEeCCCcc-----ccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHH----hcCCCCCHHHHHH
Confidence 78999999876 6889999999 5899999999999999987776 4567899999998
Q ss_pred HHHhhhcccccCcchhhHHHHHHHHhhHH
Q 003088 489 AVHLSARYISDRYLPDKAIDLVDEAGSRA 517 (849)
Q Consensus 489 ~a~ls~~~~~~r~~p~~ai~ll~~a~~~~ 517 (849)
++..+.+. +..+..+++.+...+
T Consensus 212 l~~~~~G~------~r~l~~~l~~~~~~a 234 (338)
T 3pfi_A 212 IAKRSRST------PRIALRLLKRVRDFA 234 (338)
T ss_dssp HHHTTTTC------HHHHHHHHHHHHHHH
T ss_pred HHHHHCcC------HHHHHHHHHHHHHHH
Confidence 88866553 346666666665443
No 37
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.76 E-value=1.3e-18 Score=194.24 Aligned_cols=215 Identities=25% Similarity=0.366 Sum_probs=135.2
Q ss_pred HHHHHHHHhccccccHHHHHHHHHHH----HHhhcCC-------C----------CCCCCCccceeecCCCCchHHHHHH
Q 003088 620 LVGLEEQLKKRVIGQDEAVAAISRAV----KRSRVGL-------K----------DPNRPTAAMLFCGPTGVGKTELAKS 678 (849)
Q Consensus 620 ~~~l~~~l~~~i~Gq~~~i~~l~~~l----~~~~~g~-------~----------~~~~p~~~lL~~Gp~GtGKt~lA~~ 678 (849)
+..+.+.|.+.|+||+.+++.|..++ .+.+.|. . ....+..++||+||||||||++|++
T Consensus 12 ~~~l~~~L~~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~ 91 (376)
T 1um8_A 12 PKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQT 91 (376)
T ss_dssp HHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHH
T ss_pred HHHHHHHHhhHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHH
Confidence 45677888889999999999998887 3333222 0 0112334699999999999999999
Q ss_pred HHHHhcCCCCceeEeeccccccccccccccCCCCCccccccCcchhHHHH-------hCCCeEEEEeCccccCHH-----
Q 003088 679 LAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIR-------RRPFTLLLLDEIEKAHPD----- 746 (849)
Q Consensus 679 la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~i~-------~~~~~vl~lDEid~l~~~----- 746 (849)
+|+.+ +.+|+.++|..+.. .+|+|....+.+...+. .+.++||||||+|++++.
T Consensus 92 la~~l---~~~~~~~~~~~~~~-----------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~ 157 (376)
T 1um8_A 92 LAKHL---DIPIAISDATSLTE-----------AGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRS 157 (376)
T ss_dssp HHHHT---TCCEEEEEGGGCC-------------------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------
T ss_pred HHHHh---CCCEEEecchhhhh-----------cCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCc
Confidence 99987 56899999887642 24555554444554433 346789999999999988
Q ss_pred ---------HHHHHHHHhhcCee--ecCCCce--------eecCCeEEEEecCCC-chhhhcc--cCCccccccccCCc-
Q 003088 747 ---------IFNILLQVFEDGHL--TDSHGRR--------VSFKNALIVMTSNVG-STTIAKG--RHGSIGFLLEDNES- 803 (849)
Q Consensus 747 ---------~~~~Ll~~le~g~~--~~~~g~~--------~~~~~~~iI~tsn~~-~~~l~~~--~~~~~gf~~~~~~~- 803 (849)
+|+.|+++|+++.+ .+.+++. +...|++||+++|.. .+..... ....+||.......
T Consensus 158 ~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~ 237 (376)
T 1um8_A 158 ITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKK 237 (376)
T ss_dssp ------CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTT
T ss_pred eecccchHHHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhcc
Confidence 99999999998754 3333333 334567777777742 2221111 11234665433211
Q ss_pred ccHHhHHHHHHHHHH-hhCChHHhhccccEEEcCCCCHHHHccccC
Q 003088 804 TSYAGMKTLVVEELK-AYFRPELLNRIDEVVVFRSLEKAQVCQLPL 848 (849)
Q Consensus 804 ~~~~~~~~~~~~~l~-~~~~pell~R~d~~i~f~pl~~~~~~~I~~ 848 (849)
.....+.......+. ..|.|+|++||+.++.|+||+.+++.+|+.
T Consensus 238 ~~~~~~~~~~~~~l~~~~~~p~l~~R~~~~i~~~~l~~~~l~~i~~ 283 (376)
T 1um8_A 238 EQEAILHLVQTHDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQ 283 (376)
T ss_dssp TTTTSGGGCCHHHHHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHH
T ss_pred chhHHHhhcCHHHHhhcCCChHHhcCCCceeeccCCCHHHHHHHHh
Confidence 111112223333443 348999999999999999999999988873
No 38
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.76 E-value=4.1e-18 Score=184.28 Aligned_cols=205 Identities=18% Similarity=0.254 Sum_probs=149.3
Q ss_pred cCCCCccccHHHHHHHHHHHhc-------------CCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEee
Q 003088 287 ELIDPVIGRETEIQRIIQILCR-------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD 353 (849)
Q Consensus 287 ~~l~~iiG~~~~i~~l~~~l~~-------------~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~ 353 (849)
..+++++|.++.++.+.+.+.. ....++||+||||||||++|+++|..+ +..++.++
T Consensus 12 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~----------~~~~i~v~ 81 (301)
T 3cf0_A 12 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISIK 81 (301)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT----------TCEEEEEC
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh----------CCCEEEEE
Confidence 4577899999999888886642 345679999999999999999999987 56788888
Q ss_pred hhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCC-CCCccHHHHHHHhhhhc----CCCeEEEE
Q 003088 354 MGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRG-NKGTGLDISNLLKPSLG----RGELQCIA 428 (849)
Q Consensus 354 ~~~~~~~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~-~~~~~~~~~~~L~~~le----~~~i~vI~ 428 (849)
+..+.. ++.|+.+..++.+|+.+....++||||||+|.+.+......+ ..+....+++.|+..++ ..++++|+
T Consensus 82 ~~~l~~--~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~ 159 (301)
T 3cf0_A 82 GPELLT--MWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIG 159 (301)
T ss_dssp HHHHHH--HHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEE
T ss_pred hHHHHh--hhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEE
Confidence 777652 345666777889999998888999999999999864321100 01122345555555554 45799999
Q ss_pred ccChHHHHHHhhccHHHHh--ccc-cEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhcccccCcchhh
Q 003088 429 STTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDK 505 (849)
Q Consensus 429 at~~~~~~~~~~~d~al~~--Rf~-~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~~~r~~p~~ 505 (849)
+||..+ .+++++.+ ||. .++|+.|+.++|.+||+.++... ++. .+..+..++..+.+|. +.+
T Consensus 160 atn~~~-----~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~----~~~-~~~~~~~la~~~~g~s-----g~d 224 (301)
T 3cf0_A 160 ATNRPD-----IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKS----PVA-KDVDLEFLAKMTNGFS-----GAD 224 (301)
T ss_dssp EESCGG-----GSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTS----CBC-SSCCHHHHHHTCSSCC-----HHH
T ss_pred ecCCcc-----ccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccC----CCC-ccchHHHHHHHcCCCC-----HHH
Confidence 999886 78999998 997 69999999999999998776532 221 1122445566655543 456
Q ss_pred HHHHHHHHhhHHH
Q 003088 506 AIDLVDEAGSRAH 518 (849)
Q Consensus 506 ai~ll~~a~~~~~ 518 (849)
...++++|+..+.
T Consensus 225 l~~l~~~a~~~a~ 237 (301)
T 3cf0_A 225 LTEICQRACKLAI 237 (301)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777877776553
No 39
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.76 E-value=7.2e-18 Score=184.32 Aligned_cols=197 Identities=15% Similarity=0.154 Sum_probs=155.1
Q ss_pred hhhhhHHHHhhcCCCCccccHHHHHHHHHHHhcCCCCCC-eEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeeh
Q 003088 276 FCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP-ILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM 354 (849)
Q Consensus 276 ~~~~l~~~~~~~~l~~iiG~~~~i~~l~~~l~~~~~~ni-LL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~ 354 (849)
....|.++|+|.+|++++|+++.++.+..++.....+++ |++||||||||++|+++++.+ +.+++.++.
T Consensus 12 ~~~~~~~k~rP~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l----------~~~~~~i~~ 81 (324)
T 3u61_B 12 KEHILEQKYRPSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV----------NADMMFVNG 81 (324)
T ss_dssp TCSSHHHHSCCCSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT----------TEEEEEEET
T ss_pred ccchHHHhhCCCCHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh----------CCCEEEEcc
Confidence 345899999999999999999999999999987776666 556779999999999999998 567777775
Q ss_pred hhhhccccccchHHHHHHHHHHHHHh-----cCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcC--CCeEEE
Q 003088 355 GLLMAGAKERGELEARVTTLISEIQK-----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--GELQCI 427 (849)
Q Consensus 355 ~~~~~~~~~~g~~e~~l~~l~~~~~~-----~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~--~~i~vI 427 (849)
+.. + ...++..+..+.. +.+.||||||+|.+. +.+.++.|+.+++. ..+.+|
T Consensus 82 ~~~-------~--~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~------------~~~~~~~L~~~le~~~~~~~iI 140 (324)
T 3u61_B 82 SDC-------K--IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSG------------LAESQRHLRSFMEAYSSNCSII 140 (324)
T ss_dssp TTC-------C--HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGG------------GHHHHHHHHHHHHHHGGGCEEE
T ss_pred ccc-------C--HHHHHHHHHHHHhhcccCCCCeEEEEECCcccC------------cHHHHHHHHHHHHhCCCCcEEE
Confidence 431 1 2334444444333 256899999999992 15567888888875 578899
Q ss_pred EccChHHHHHHhhccHHHHhccccEEecCCCHHHHHHHHHHHHHHHH---hhcCCccCH-HHHHHHHHhhhcccccCcch
Q 003088 428 ASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYE---AHHNCKFTL-EAINAAVHLSARYISDRYLP 503 (849)
Q Consensus 428 ~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL~~~~~~~~---~~~~~~i~~-~~l~~~a~ls~~~~~~r~~p 503 (849)
++||... .+++++++||..+.|++|+.+++.+|+..+..... ...++.+++ +++..++..+.+.+.
T Consensus 141 ~~~n~~~-----~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R----- 210 (324)
T 3u61_B 141 ITANNID-----GIIKPLQSRCRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFR----- 210 (324)
T ss_dssp EEESSGG-----GSCTTHHHHSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTT-----
T ss_pred EEeCCcc-----ccCHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHH-----
Confidence 9999876 78899999999999999999999888777654432 456889988 999999998877653
Q ss_pred hhHHHHHHHHh
Q 003088 504 DKAIDLVDEAG 514 (849)
Q Consensus 504 ~~ai~ll~~a~ 514 (849)
.+++.++.++
T Consensus 211 -~a~~~L~~~~ 220 (324)
T 3u61_B 211 -KTIGELDSYS 220 (324)
T ss_dssp -HHHHHHHHHG
T ss_pred -HHHHHHHHHh
Confidence 5788887776
No 40
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.76 E-value=2.4e-18 Score=182.58 Aligned_cols=180 Identities=22% Similarity=0.303 Sum_probs=130.5
Q ss_pred ccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeecccccccccccccc
Q 003088 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLI 708 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~ 708 (849)
+.++|++..+..+...+...... ..++||+||||||||++|+++++.+.+.+.+|+.++|+.+......+.++
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~-------~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 78 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPL-------DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELF 78 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTS-------CSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHHHHHHHH
T ss_pred ccceeCCHHHHHHHHHHHHHhCC-------CCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhHHHHHhc
Confidence 56899999999988888765321 13499999999999999999999886667889999999987665566777
Q ss_pred CCCCC-ccccccCcchhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCchhhh
Q 003088 709 GSPPG-YVGYEEGGLLTEAIRRRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIA 787 (849)
Q Consensus 709 g~~~g-~vg~~~~~~l~~~i~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~ 787 (849)
|...+ |.|... ...+.+..+.+++||||||+.+++++|+.|+++|+++.+...++......+++||+|||.++..+.
T Consensus 79 g~~~~~~~g~~~--~~~~~l~~a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~~~~~~ 156 (265)
T 2bjv_A 79 GHEAGAFTGAQK--RHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMV 156 (265)
T ss_dssp CCC-----------CCCCHHHHTTTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSCHHHHH
T ss_pred CCcccccccccc--cccchhhhcCCcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcCHHHHH
Confidence 76433 333221 122344456678999999999999999999999999988765554444568999999998765543
Q ss_pred cccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccc-cEEEcCCCCH--HHHccc
Q 003088 788 KGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRID-EVVVFRSLEK--AQVCQL 846 (849)
Q Consensus 788 ~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d-~~i~f~pl~~--~~~~~I 846 (849)
..+ .|+++|++||+ ..+.++|++. +++..+
T Consensus 157 ~~~-----------------------------~~~~~L~~Rl~~~~i~lp~L~~R~~di~~l 189 (265)
T 2bjv_A 157 NEG-----------------------------TFRADLLDALAFDVVQLPPLRERESDIMLM 189 (265)
T ss_dssp HHT-----------------------------SSCHHHHHHHCSEEEECCCGGGCHHHHHHH
T ss_pred HcC-----------------------------CccHHHHHhhcCcEEeCCChhhhhHHHHHH
Confidence 222 28899999996 5788999985 565544
No 41
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.75 E-value=1.9e-17 Score=174.89 Aligned_cols=206 Identities=19% Similarity=0.234 Sum_probs=141.0
Q ss_pred cCCCCccccHHHHHHHHHHHhc------------CCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeeh
Q 003088 287 ELIDPVIGRETEIQRIIQILCR------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM 354 (849)
Q Consensus 287 ~~l~~iiG~~~~i~~l~~~l~~------------~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~ 354 (849)
..|++++|.++.++.+.+++.. ...+++||+||||||||++|+++|+++ +.+++.+++
T Consensus 3 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~----------~~~~~~~~~ 72 (262)
T 2qz4_A 3 VSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA----------QVPFLAMAG 72 (262)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH----------TCCEEEEET
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCEEEech
Confidence 3588999999988888765421 345678999999999999999999987 567788887
Q ss_pred hhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCC--CCccHHHHHHHhhhhc----CCCeEEEE
Q 003088 355 GLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGN--KGTGLDISNLLKPSLG----RGELQCIA 428 (849)
Q Consensus 355 ~~~~~~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~--~~~~~~~~~~L~~~le----~~~i~vI~ 428 (849)
..+. ..+.+..+..++.++..+....++||||||+|.+.......... ........+.|...++ ...+++|+
T Consensus 73 ~~~~--~~~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~ 150 (262)
T 2qz4_A 73 AEFV--EVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLA 150 (262)
T ss_dssp TTTS--SSSTTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEE
T ss_pred HHHH--hhccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEe
Confidence 7665 34567788889999999988888999999999997543221000 0011122233333332 35789999
Q ss_pred ccChHHHHHHhhccHHHHh--ccc-cEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHH-HHHHHHhhhcccccCcchh
Q 003088 429 STTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEA-INAAVHLSARYISDRYLPD 504 (849)
Q Consensus 429 at~~~~~~~~~~~d~al~~--Rf~-~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~-l~~~a~ls~~~~~~r~~p~ 504 (849)
+||..+ .+++++.+ ||. .+.|+.|+.+++.+||+.++. ..++..+.+. +..++..+.+|. +.
T Consensus 151 ~tn~~~-----~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~----~~~~~~~~~~~~~~l~~~~~g~~-----~~ 216 (262)
T 2qz4_A 151 STNRAD-----ILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLK----SLKLTQSSTFYSQRLAELTPGFS-----GA 216 (262)
T ss_dssp EESCGG-----GGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHH----HTTCCBTHHHHHHHHHHTCTTCC-----HH
T ss_pred cCCChh-----hcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHH----hCCCCcchhhHHHHHHHHCCCCC-----HH
Confidence 999876 78899999 996 699999999999999988877 3345555543 456666665543 35
Q ss_pred hHHHHHHHHhhHHH
Q 003088 505 KAIDLVDEAGSRAH 518 (849)
Q Consensus 505 ~ai~ll~~a~~~~~ 518 (849)
....+++.|+..+.
T Consensus 217 ~l~~l~~~a~~~a~ 230 (262)
T 2qz4_A 217 DIANICNEAALHAA 230 (262)
T ss_dssp HHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHH
Confidence 66677777765543
No 42
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.75 E-value=9.7e-18 Score=192.13 Aligned_cols=207 Identities=22% Similarity=0.268 Sum_probs=159.1
Q ss_pred HHhhcCCCCccccHHHHHHHHHHHhc-------------CCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeE
Q 003088 283 RASEELIDPVIGRETEIQRIIQILCR-------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRI 349 (849)
Q Consensus 283 ~~~~~~l~~iiG~~~~i~~l~~~l~~-------------~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~ 349 (849)
...+..+++++|.++.++.+.+.+.. ....++||+||||||||++|++++.++ +.++
T Consensus 197 ~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~----------~~~f 266 (489)
T 3hu3_A 197 SLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET----------GAFF 266 (489)
T ss_dssp HHTCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC----------SSEE
T ss_pred ccCCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh----------CCCE
Confidence 34455788999999999998887642 456789999999999999999999987 7789
Q ss_pred EEeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhc----CCCeE
Q 003088 350 MSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG----RGELQ 425 (849)
Q Consensus 350 ~~l~~~~~~~~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le----~~~i~ 425 (849)
+.+++..+. ..+.|+.+..++.+|..+....++||||||+|.+.+......+ +....+++.|+..++ ...++
T Consensus 267 v~vn~~~l~--~~~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~--~~~~~~~~~LL~~ld~~~~~~~v~ 342 (489)
T 3hu3_A 267 FLINGPEIM--SKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHG--EVERRIVSQLLTLMDGLKQRAHVI 342 (489)
T ss_dssp EEEEHHHHH--TSCTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCC--HHHHHHHHHHHHHHHHSCTTSCEE
T ss_pred EEEEchHhh--hhhcchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccc--hHHHHHHHHHHHHhhccccCCceE
Confidence 999988887 3457899999999999999988999999999999875433211 223456677777665 46799
Q ss_pred EEEccChHHHHHHhhccHHHHh--ccc-cEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhcccccCcc
Q 003088 426 CIASTTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYL 502 (849)
Q Consensus 426 vI~at~~~~~~~~~~~d~al~~--Rf~-~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~~~r~~ 502 (849)
+|+|||.++ .+++++++ ||. .|.|+.|+.++|.+||+.+.+. ..+. .+..+..++..+.+|.
T Consensus 343 vIaaTn~~~-----~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~----~~l~-~~~~l~~la~~t~g~s----- 407 (489)
T 3hu3_A 343 VMAATNRPN-----SIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKN----MKLA-DDVDLEQVANETHGHV----- 407 (489)
T ss_dssp EEEEESCGG-----GBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTT----SCBC-TTCCHHHHHHTCTTCC-----
T ss_pred EEEecCCcc-----ccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhc----CCCc-chhhHHHHHHHccCCc-----
Confidence 999999986 78999999 887 5999999999999999876552 2222 1223556666666654
Q ss_pred hhhHHHHHHHHhhHHH
Q 003088 503 PDKAIDLVDEAGSRAH 518 (849)
Q Consensus 503 p~~ai~ll~~a~~~~~ 518 (849)
+.....++.+|+..+.
T Consensus 408 ~~dL~~L~~~A~~~a~ 423 (489)
T 3hu3_A 408 GADLAALCSEAALQAI 423 (489)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4566677777765553
No 43
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.75 E-value=2.3e-17 Score=184.43 Aligned_cols=180 Identities=21% Similarity=0.269 Sum_probs=144.1
Q ss_pred ccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeecccccccccccccc
Q 003088 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLI 708 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~ 708 (849)
..++|++..++.+...+..... ...+++++|++||||+++|++++....+.+.+|+.+||+.+.+....+.||
T Consensus 137 ~~~ig~s~~m~~l~~~i~~~a~-------~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elf 209 (387)
T 1ny5_A 137 EEYVFESPKMKEILEKIKKISC-------AECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELF 209 (387)
T ss_dssp CCCCCCSHHHHHHHHHHHHHTT-------CCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHH
T ss_pred hhhhhccHHhhHHHHHHHHhcC-------CCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhc
Confidence 3477777778887777766421 123499999999999999999999987778899999999998888888999
Q ss_pred CCCCC-ccccccCcchhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCchhhh
Q 003088 709 GSPPG-YVGYEEGGLLTEAIRRRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIA 787 (849)
Q Consensus 709 g~~~g-~vg~~~~~~l~~~i~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~ 787 (849)
|...| +.|... ...+.+..+.+|+||||||+.+++.+|..|+++|+++.+...++......+++||++||.+...+.
T Consensus 210 g~~~g~~tga~~--~~~g~~~~a~~gtlfldei~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~~ 287 (387)
T 1ny5_A 210 GYEKGAFTGAVS--SKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELV 287 (387)
T ss_dssp CBCTTSSTTCCS--CBCCHHHHTTTSEEEEESGGGCCHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHHHHH
T ss_pred CCCCCCCCCccc--ccCCceeeCCCcEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCCHHHHH
Confidence 97654 334322 233566677889999999999999999999999999999887777666779999999999887766
Q ss_pred cccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccc-cEEEcCCCCH--HHHccc
Q 003088 788 KGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRID-EVVVFRSLEK--AQVCQL 846 (849)
Q Consensus 788 ~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d-~~i~f~pl~~--~~~~~I 846 (849)
..+. |+++|++|++ ..|.+|||.+ +|+..+
T Consensus 288 ~~g~-----------------------------fr~dl~~rl~~~~i~lPpLreR~~Di~~l 320 (387)
T 1ny5_A 288 KEGK-----------------------------FREDLYYRLGVIEIEIPPLRERKEDIIPL 320 (387)
T ss_dssp HTTS-----------------------------SCHHHHHHHTTEEEECCCGGGCHHHHHHH
T ss_pred HcCC-----------------------------ccHHHHHhhcCCeecCCcchhccccHHHH
Confidence 5554 9999999997 4677888874 555544
No 44
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.75 E-value=1.5e-17 Score=184.46 Aligned_cols=179 Identities=20% Similarity=0.289 Sum_probs=140.7
Q ss_pred cccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccccccC
Q 003088 630 RVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIG 709 (849)
Q Consensus 630 ~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g 709 (849)
.++|++..+..+...+....... .+++++|++||||+.+|+++|....+.+ .|+.+||..+.+....+.|||
T Consensus 130 ~~ig~s~~~~~~~~~~~~~a~~~-------~~vli~GesGtGKe~lAr~ih~~s~r~~-~fv~vnc~~~~~~~~~~~lfg 201 (368)
T 3dzd_A 130 EFVGEHPKILEIKRLIPKIAKSK-------APVLITGESGTGKEIVARLIHRYSGRKG-AFVDLNCASIPQELAESELFG 201 (368)
T ss_dssp CCCCCSHHHHHHHHHHHHHHTSC-------SCEEEECCTTSSHHHHHHHHHHHHCCCS-CEEEEESSSSCTTTHHHHHHE
T ss_pred cccccchHHHHHHhhhhhhhccc-------hhheEEeCCCchHHHHHHHHHHhccccC-CcEEEEcccCChHHHHHHhcC
Confidence 36778777777777776543221 2399999999999999999999875544 499999999988888888999
Q ss_pred CCCC-ccccccCcchhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCchhhhc
Q 003088 710 SPPG-YVGYEEGGLLTEAIRRRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAK 788 (849)
Q Consensus 710 ~~~g-~vg~~~~~~l~~~i~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~~ 788 (849)
...| +.|... .-.+.+..+.+|+||||||+.+++..|..|+++|++|.+...++......++++|++||.++..+..
T Consensus 202 ~~~g~~tga~~--~~~g~~~~a~~gtlfldei~~l~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~v~ 279 (368)
T 3dzd_A 202 HEKGAFTGALT--RKKGKLELADQGTLFLDEVGELDQRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNLEEEIK 279 (368)
T ss_dssp ECSCSSSSCCC--CEECHHHHTTTSEEEEETGGGSCHHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSCHHHHHH
T ss_pred ccccccCCccc--ccCChHhhcCCCeEEecChhhCCHHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCCHHHHHH
Confidence 7654 333221 1234556678899999999999999999999999999999877766666799999999998877665
Q ss_pred ccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhcccc-EEEcCCCCH--HHHcccc
Q 003088 789 GRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDE-VVVFRSLEK--AQVCQLP 847 (849)
Q Consensus 789 ~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~-~i~f~pl~~--~~~~~I~ 847 (849)
.+. |+++|++|+.. .|.+|||.+ +|+..++
T Consensus 280 ~g~-----------------------------fr~dL~~rl~~~~i~lPpLreR~~Di~~l~ 312 (368)
T 3dzd_A 280 KGN-----------------------------FREDLYYRLSVFQIYLPPLRERGKDVILLA 312 (368)
T ss_dssp TTS-----------------------------SCHHHHHHHTSEEEECCCGGGSTTHHHHHH
T ss_pred cCC-----------------------------ccHHHHHHhCCeEEeCCChhhchhhHHHHH
Confidence 544 99999999975 578899886 5665443
No 45
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.74 E-value=9.1e-18 Score=184.81 Aligned_cols=156 Identities=24% Similarity=0.388 Sum_probs=121.3
Q ss_pred ccccccHHHHHHHHHHHHH--------hhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeecccccc
Q 003088 629 KRVIGQDEAVAAISRAVKR--------SRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYME 700 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~--------~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~ 700 (849)
+.|.|.+++++.|...+.. ...|...|. .+|||||||||||++|+++|..+ +.+|+.++++++..
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~pr----GvLL~GPPGTGKTllAkAiA~e~---~~~f~~v~~s~l~s 220 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPK----GVILYGPPGTGKTLLARAVAHHT---DCKFIRVSGAELVQ 220 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCC----CEEEESCSSSSHHHHHHHHHHHH---TCEEEEEEGGGGSC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCC----ceEEeCCCCCCHHHHHHHHHHhh---CCCceEEEhHHhhc
Confidence 5689999999999888754 234665543 39999999999999999999997 77899999988765
Q ss_pred ccccccccCCCCCccccccCc--chhHHHHhCCCeEEEEeCccccCH--------------HHHHHHHHHhhcCeeecCC
Q 003088 701 RHTVSKLIGSPPGYVGYEEGG--LLTEAIRRRPFTLLLLDEIEKAHP--------------DIFNILLQVFEDGHLTDSH 764 (849)
Q Consensus 701 ~~~~~~l~g~~~g~vg~~~~~--~l~~~i~~~~~~vl~lDEid~l~~--------------~~~~~Ll~~le~g~~~~~~ 764 (849)
.|+|..+.. .++...+...+|||||||||.+.+ .+.+.||..||.-.
T Consensus 221 ------------k~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~----- 283 (405)
T 4b4t_J 221 ------------KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFE----- 283 (405)
T ss_dssp ------------SSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTT-----
T ss_pred ------------cccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccC-----
Confidence 367766532 244445566679999999998732 26778888887522
Q ss_pred CceeecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhh--ccccEEEcCCCCHHH
Q 003088 765 GRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLN--RIDEVVVFRSLEKAQ 842 (849)
Q Consensus 765 g~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~--R~d~~i~f~pl~~~~ 842 (849)
...+++||+|||.... ++|+|+. |||..|.|++++.++
T Consensus 284 ----~~~~V~vIaATNrpd~------------------------------------LDpAllRpGRfD~~I~i~lPd~~~ 323 (405)
T 4b4t_J 284 ----TSKNIKIIMATNRLDI------------------------------------LDPALLRPGRIDRKIEFPPPSVAA 323 (405)
T ss_dssp ----CCCCEEEEEEESCSSS------------------------------------SCHHHHSTTSSCCEEECCCCCHHH
T ss_pred ----CCCCeEEEeccCChhh------------------------------------CCHhHcCCCcCceEEEcCCcCHHH
Confidence 1247899999997421 8999996 999999999999999
Q ss_pred HccccC
Q 003088 843 VCQLPL 848 (849)
Q Consensus 843 ~~~I~~ 848 (849)
..+|++
T Consensus 324 R~~Il~ 329 (405)
T 4b4t_J 324 RAEILR 329 (405)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888875
No 46
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.73 E-value=2.3e-17 Score=174.12 Aligned_cols=209 Identities=19% Similarity=0.257 Sum_probs=145.0
Q ss_pred HHHhhcCCCCccccHHHHHHHHHHHhc------------CCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeE
Q 003088 282 ARASEELIDPVIGRETEIQRIIQILCR------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRI 349 (849)
Q Consensus 282 ~~~~~~~l~~iiG~~~~i~~l~~~l~~------------~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~ 349 (849)
+...+..|++++|.++.++.+.+++.. ....+++|+||||||||++|++++..+ +.++
T Consensus 4 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~----------~~~~ 73 (257)
T 1lv7_A 4 EDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA----------KVPF 73 (257)
T ss_dssp ECSSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH----------TCCE
T ss_pred ccCCCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc----------CCCE
Confidence 344566789999999888887665421 235679999999999999999999987 4456
Q ss_pred EEeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCC-CCccHHHHHHHhhhhc----CCCe
Q 003088 350 MSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGN-KGTGLDISNLLKPSLG----RGEL 424 (849)
Q Consensus 350 ~~l~~~~~~~~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~-~~~~~~~~~~L~~~le----~~~i 424 (849)
+.++...+.. .+.|+.+..++.+++.+....++++||||+|.+........+. ........+.+...++ ...+
T Consensus 74 ~~i~~~~~~~--~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 151 (257)
T 1lv7_A 74 FTISGSDFVE--MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGI 151 (257)
T ss_dssp EEECSCSSTT--SCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCE
T ss_pred EEEeHHHHHH--HhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCE
Confidence 6776655542 3456667788899999888778999999999997643321110 0111133444444443 4678
Q ss_pred EEEEccChHHHHHHhhccHHHHh--ccc-cEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHH-HHHHHHhhhcccccC
Q 003088 425 QCIASTTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEA-INAAVHLSARYISDR 500 (849)
Q Consensus 425 ~vI~at~~~~~~~~~~~d~al~~--Rf~-~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~-l~~~a~ls~~~~~~r 500 (849)
++|++||..+ .+++++.+ ||. .+.++.|+.++|.+||+.+.++ ..+++++ +..++..+.+
T Consensus 152 ~vI~~tn~~~-----~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~------~~l~~~~~~~~la~~~~G----- 215 (257)
T 1lv7_A 152 IVIAATNRPD-----VLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRR------VPLAPDIDAAIIARGTPG----- 215 (257)
T ss_dssp EEEEEESCTT-----TSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTT------SCBCTTCCHHHHHHTCTT-----
T ss_pred EEEEeeCCch-----hCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhc------CCCCccccHHHHHHHcCC-----
Confidence 9999999886 78899988 997 6999999999999999776542 2233322 3444444443
Q ss_pred cchhhHHHHHHHHhhHHH
Q 003088 501 YLPDKAIDLVDEAGSRAH 518 (849)
Q Consensus 501 ~~p~~ai~ll~~a~~~~~ 518 (849)
+.+.....++.+|...+.
T Consensus 216 ~~~~dl~~l~~~a~~~a~ 233 (257)
T 1lv7_A 216 FSGADLANLVNEAALFAA 233 (257)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 345677777777766553
No 47
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.73 E-value=1.3e-17 Score=160.02 Aligned_cols=143 Identities=15% Similarity=0.146 Sum_probs=112.4
Q ss_pred cccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccccccC
Q 003088 630 RVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIG 709 (849)
Q Consensus 630 ~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g 709 (849)
.++|++..++.+...+...... ..++||+||||||||++|+++|+.....+.+|+ ++|+.+.+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~-------~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~-------- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSET-------DIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA-------- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTC-------CSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS--------
T ss_pred CceeCCHHHHHHHHHHHHHhCC-------CCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc--------
Confidence 5799999999999988875321 134999999999999999999998766678899 999876442
Q ss_pred CCCCccccccCcchhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCchhhhcc
Q 003088 710 SPPGYVGYEEGGLLTEAIRRRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKG 789 (849)
Q Consensus 710 ~~~g~vg~~~~~~l~~~i~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~~~ 789 (849)
....+.+..+.+++|||||||.+++..|..|+++|+.. ..++++|+|||.+...+...
T Consensus 66 -----------~~~~~~~~~a~~g~l~ldei~~l~~~~q~~Ll~~l~~~-----------~~~~~~I~~t~~~~~~~~~~ 123 (145)
T 3n70_A 66 -----------PQLNDFIALAQGGTLVLSHPEHLTREQQYHLVQLQSQE-----------HRPFRLIGIGDTSLVELAAS 123 (145)
T ss_dssp -----------SCHHHHHHHHTTSCEEEECGGGSCHHHHHHHHHHHHSS-----------SCSSCEEEEESSCHHHHHHH
T ss_pred -----------hhhhcHHHHcCCcEEEEcChHHCCHHHHHHHHHHHhhc-----------CCCEEEEEECCcCHHHHHHc
Confidence 12334555567789999999999999999999999541 24678999999987665444
Q ss_pred cCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccc-cEEEcCCCC
Q 003088 790 RHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRID-EVVVFRSLE 839 (849)
Q Consensus 790 ~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d-~~i~f~pl~ 839 (849)
+. |+++|++||. ..|.+|||.
T Consensus 124 ~~-----------------------------~~~~L~~rl~~~~i~lPpLR 145 (145)
T 3n70_A 124 NH-----------------------------IIAELYYCFAMTQIACLPLT 145 (145)
T ss_dssp SC-----------------------------CCHHHHHHHHHHEEECCCCC
T ss_pred CC-----------------------------CCHHHHHHhcCCEEeCCCCC
Confidence 33 8999999996 468888874
No 48
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.72 E-value=1.1e-16 Score=163.72 Aligned_cols=197 Identities=21% Similarity=0.232 Sum_probs=146.4
Q ss_pred hhhHHHHhhcCCCCccccHHHHHHHHHHHhcCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhh
Q 003088 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLL 357 (849)
Q Consensus 278 ~~l~~~~~~~~l~~iiG~~~~i~~l~~~l~~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~ 357 (849)
.+|.++++|..+++++|+++.++.+.+.+......+++|+||||||||++++.+++.+..... ...++.++....
T Consensus 5 ~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~-----~~~~~~~~~~~~ 79 (226)
T 2chg_A 5 EIWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENW-----RDNFIEMNASDE 79 (226)
T ss_dssp CCHHHHTSCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGGG-----GGGEEEEETTCT
T ss_pred hhHHHhcCCCCHHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhcccc-----ccceEEeccccc
Confidence 367888999999999999999999999998887778999999999999999999998753211 233455544321
Q ss_pred hccccccchHHHHHHHHHHHHH------hcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcC--CCeEEEEc
Q 003088 358 MAGAKERGELEARVTTLISEIQ------KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--GELQCIAS 429 (849)
Q Consensus 358 ~~~~~~~g~~e~~l~~l~~~~~------~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~--~~i~vI~a 429 (849)
. .... +...+.... ..++.||||||+|.+. .+.++.|..+++. ..+.+|++
T Consensus 80 ~----~~~~----~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~-------------~~~~~~l~~~l~~~~~~~~~i~~ 138 (226)
T 2chg_A 80 R----GIDV----VRHKIKEFARTAPIGGAPFKIIFLDEADALT-------------ADAQAALRRTMEMYSKSCRFILS 138 (226)
T ss_dssp T----CHHH----HHHHHHHHHTSCCSTTCSCEEEEEETGGGSC-------------HHHHHHHHHHHHHTTTTEEEEEE
T ss_pred c----ChHH----HHHHHHHHhcccCCCccCceEEEEeChhhcC-------------HHHHHHHHHHHHhcCCCCeEEEE
Confidence 1 1111 222222222 2457899999999992 3446667777763 56788888
Q ss_pred cChHHHHHHhhccHHHHhccccEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhcccccCcchhhHHHH
Q 003088 430 TTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDL 509 (849)
Q Consensus 430 t~~~~~~~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~~~r~~p~~ai~l 509 (849)
|+... .+++++.+||..+.+++|+.++..+++..... ..++.++++++..++..+.+. |..++.+
T Consensus 139 ~~~~~-----~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~l~~~~~g~------~r~l~~~ 203 (226)
T 2chg_A 139 CNYVS-----RIIEPIQSRCAVFRFKPVPKEAMKKRLLEICE----KEGVKITEDGLEALIYISGGD------FRKAINA 203 (226)
T ss_dssp ESCGG-----GSCHHHHTTSEEEECCCCCHHHHHHHHHHHHH----HHTCCBCHHHHHHHHHHHTTC------HHHHHHH
T ss_pred eCChh-----hcCHHHHHhCceeecCCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHcCCC------HHHHHHH
Confidence 88765 67899999999999999999999999987766 456789999999888777653 4566676
Q ss_pred HHHHhh
Q 003088 510 VDEAGS 515 (849)
Q Consensus 510 l~~a~~ 515 (849)
++.++.
T Consensus 204 l~~~~~ 209 (226)
T 2chg_A 204 LQGAAA 209 (226)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 666653
No 49
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.71 E-value=8.8e-17 Score=182.66 Aligned_cols=203 Identities=21% Similarity=0.279 Sum_probs=146.6
Q ss_pred CCCCccccHHHHHHHHHHHhc------------CCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehh
Q 003088 288 LIDPVIGRETEIQRIIQILCR------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMG 355 (849)
Q Consensus 288 ~l~~iiG~~~~i~~l~~~l~~------------~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~ 355 (849)
+|++++|.++.++.+.+++.. +.+.++||+||||||||++|+++|.++ +.+++.+++.
T Consensus 14 ~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~----------~~~f~~is~~ 83 (476)
T 2ce7_A 14 TFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA----------NVPFFHISGS 83 (476)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH----------TCCEEEEEGG
T ss_pred CHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc----------CCCeeeCCHH
Confidence 578999999988887776522 124579999999999999999999987 5677888877
Q ss_pred hhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCC-CCCccHHHHHHHhhhhc----CCCeEEEEcc
Q 003088 356 LLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRG-NKGTGLDISNLLKPSLG----RGELQCIAST 430 (849)
Q Consensus 356 ~~~~~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~-~~~~~~~~~~~L~~~le----~~~i~vI~at 430 (849)
.+.. .+.|..+.+++.+|..+....|+||||||+|.+......+.+ ........++.|+..++ +..+++|++|
T Consensus 84 ~~~~--~~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaT 161 (476)
T 2ce7_A 84 DFVE--LFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAAT 161 (476)
T ss_dssp GTTT--CCTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEE
T ss_pred HHHH--HHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEec
Confidence 7663 456778888999999999888999999999999654322111 00112234555555553 4579999999
Q ss_pred ChHHHHHHhhccHHHHh--ccc-cEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHH-HHHHHHHhhhcccccCcchhhH
Q 003088 431 TQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLE-AINAAVHLSARYISDRYLPDKA 506 (849)
Q Consensus 431 ~~~~~~~~~~~d~al~~--Rf~-~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~-~l~~~a~ls~~~~~~r~~p~~a 506 (849)
|..+ .+++++.+ ||. .|.|+.|+.++|.+||+.+.++. .+.++ .+..++..+.+|. +.+.
T Consensus 162 n~~~-----~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~------~l~~~v~l~~la~~t~G~s-----gadL 225 (476)
T 2ce7_A 162 NRPD-----ILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNK------PLAEDVNLEIIAKRTPGFV-----GADL 225 (476)
T ss_dssp SCGG-----GSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTS------CBCTTCCHHHHHHTCTTCC-----HHHH
T ss_pred CChh-----hhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhC------CCcchhhHHHHHHhcCCCc-----HHHH
Confidence 9986 78999988 998 69999999999999997665422 22222 2556666666554 3566
Q ss_pred HHHHHHHhhHHH
Q 003088 507 IDLVDEAGSRAH 518 (849)
Q Consensus 507 i~ll~~a~~~~~ 518 (849)
..++.+|+..+.
T Consensus 226 ~~lv~~Aal~A~ 237 (476)
T 2ce7_A 226 ENLVNEAALLAA 237 (476)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777765543
No 50
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.71 E-value=5.8e-17 Score=175.48 Aligned_cols=182 Identities=25% Similarity=0.417 Sum_probs=133.4
Q ss_pred HHHHHHHHhccccccHHHHHHHHHHHHHh--hcCCCC---CCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEee
Q 003088 620 LVGLEEQLKKRVIGQDEAVAAISRAVKRS--RVGLKD---PNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLD 694 (849)
Q Consensus 620 ~~~l~~~l~~~i~Gq~~~i~~l~~~l~~~--~~g~~~---~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~ 694 (849)
+..+...+.+.++|++.+++.+..++... +.+... +..+..++||+||||||||++|+++++.+ +.+++.++
T Consensus 6 ~~~l~~~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l---~~~~~~i~ 82 (310)
T 1ofh_A 6 PREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA---NAPFIKVE 82 (310)
T ss_dssp HHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH---TCCEEEEE
T ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh---CCCEEEEc
Confidence 45677788899999999999999888652 111110 01122459999999999999999999997 56799999
Q ss_pred ccccccccccccccCCCCCccccccCcchhHHHHhC--------CCeEEEEeCccccCHHH------------HHHHHHH
Q 003088 695 MSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRRR--------PFTLLLLDEIEKAHPDI------------FNILLQV 754 (849)
Q Consensus 695 ~~~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~i~~~--------~~~vl~lDEid~l~~~~------------~~~Ll~~ 754 (849)
|+.+... +|+|......+.+.+... +++||||||+|++++.. ++.|+++
T Consensus 83 ~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~ 151 (310)
T 1ofh_A 83 ATKFTEV-----------GYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPL 151 (310)
T ss_dssp GGGGSSC-----------CSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHH
T ss_pred chhcccC-----------CccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHH
Confidence 9876531 455554433344433322 36899999999998764 9999999
Q ss_pred hhcCeeecCCCceeecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEE
Q 003088 755 FEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVV 834 (849)
Q Consensus 755 le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~ 834 (849)
|+++.+....+ .....+++||+++|..... ...++|+|++||+.++.
T Consensus 152 le~~~~~~~~~-~~~~~~~~~i~~~~~~~~~--------------------------------~~~l~~~l~~R~~~~i~ 198 (310)
T 1ofh_A 152 VEGSTVSTKHG-MVKTDHILFIASGAFQVAR--------------------------------PSDLIPELQGRLPIRVE 198 (310)
T ss_dssp HHCCEEEETTE-EEECTTCEEEEEECCSSSC--------------------------------GGGSCHHHHHTCCEEEE
T ss_pred hcCCeEecccc-cccCCcEEEEEcCCcccCC--------------------------------cccCCHHHHhhCCceEE
Confidence 99987665444 4455688999998753210 01178999999998899
Q ss_pred cCCCCHHHHccccC
Q 003088 835 FRSLEKAQVCQLPL 848 (849)
Q Consensus 835 f~pl~~~~~~~I~~ 848 (849)
|+|++.+++.+|++
T Consensus 199 ~~~~~~~~~~~il~ 212 (310)
T 1ofh_A 199 LTALSAADFERILT 212 (310)
T ss_dssp CCCCCHHHHHHHHH
T ss_pred cCCcCHHHHHHHHH
Confidence 99999999888764
No 51
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.70 E-value=9.4e-17 Score=174.47 Aligned_cols=200 Identities=19% Similarity=0.231 Sum_probs=150.2
Q ss_pred hhhHHHHhhcCCCCccccHHHHHHHHHHHhcCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhh
Q 003088 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLL 357 (849)
Q Consensus 278 ~~l~~~~~~~~l~~iiG~~~~i~~l~~~l~~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~ 357 (849)
.+|.++++|..+++++|+++.++.+...+.....++++|+||||||||++|+.+++.+..... +..++.++....
T Consensus 5 ~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~-----~~~~~~~~~~~~ 79 (319)
T 2chq_A 5 EIWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENW-----RDNFIEMNASDE 79 (319)
T ss_dssp -CTTTTTSCSSGGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTCH-----HHHCEEEETTST
T ss_pred ccHHHhcCCCCHHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCcc-----cCCeEEEeCccc
Confidence 478899999999999999999999999988877778999999999999999999999853211 223455555432
Q ss_pred hccccccchHHHHHHHHHHHH--HhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcC--CCeEEEEccChH
Q 003088 358 MAGAKERGELEARVTTLISEI--QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--GELQCIASTTQD 433 (849)
Q Consensus 358 ~~~~~~~g~~e~~l~~l~~~~--~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~--~~i~vI~at~~~ 433 (849)
.. .......+....... ..+++.|+||||+|.+ ..+.++.|..+++. ..+++|++|+..
T Consensus 80 ~~----~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l-------------~~~~~~~L~~~le~~~~~~~~i~~~~~~ 142 (319)
T 2chq_A 80 RG----IDVVRHKIKEFARTAPIGGAPFKIIFLDEADAL-------------TADAQAALRRTMEMYSKSCRFILSCNYV 142 (319)
T ss_dssp TC----TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGS-------------CHHHHHTTGGGTSSSSSSEEEEEEESCG
T ss_pred cC----hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcC-------------CHHHHHHHHHHHHhcCCCCeEEEEeCCh
Confidence 21 111222222221110 1244789999999999 34567888888886 568888888876
Q ss_pred HHHHHhhccHHHHhccccEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhcccccCcchhhHHHHHHHH
Q 003088 434 EHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEA 513 (849)
Q Consensus 434 ~~~~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~~~r~~p~~ai~ll~~a 513 (849)
. .+.+++.+||..+.|++|+.++..++|...+. ..++.++++++..++..+.+.+ ..++..++.+
T Consensus 143 ~-----~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~----~~~~~i~~~~l~~l~~~~~G~~------r~~~~~l~~~ 207 (319)
T 2chq_A 143 S-----RIIEPIQSRCAVFRFKPVPKEAMKKRLLEICE----KEGVKITEDGLEALIYISGGDF------RKAINALQGA 207 (319)
T ss_dssp G-----GSCHHHHTTCEEEECCCCCHHHHHHHHHHHHH----TTCCCBCHHHHHHHHHTTTTCH------HHHHHHHHHH
T ss_pred h-----hcchHHHhhCeEEEecCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHcCCCH------HHHHHHHHHH
Confidence 5 77899999999999999999999999987776 5688999999999988776643 4566666655
Q ss_pred h
Q 003088 514 G 514 (849)
Q Consensus 514 ~ 514 (849)
+
T Consensus 208 ~ 208 (319)
T 2chq_A 208 A 208 (319)
T ss_dssp H
T ss_pred H
Confidence 4
No 52
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.70 E-value=1.2e-16 Score=174.24 Aligned_cols=207 Identities=17% Similarity=0.246 Sum_probs=153.6
Q ss_pred hhHHhhhhhhHHHHhhcCCCCccccHHHHHHHHHHHhcCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEE
Q 003088 271 SALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIM 350 (849)
Q Consensus 271 ~~l~~~~~~l~~~~~~~~l~~iiG~~~~i~~l~~~l~~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~ 350 (849)
..+.....+|.++++|..|++++|+++.++.+..++.....++++|+||||+|||++|+++++.+..... ...++
T Consensus 6 ~~~~~~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~-----~~~~~ 80 (327)
T 1iqp_A 6 REVKVLEKPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENW-----RHNFL 80 (327)
T ss_dssp HHHHHTTSCHHHHTCCCSTTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGH-----HHHEE
T ss_pred hhhcccCCchhhccCCCCHHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcc-----cCceE
Confidence 3455567799999999999999999999999999998887778999999999999999999999753210 12344
Q ss_pred EeehhhhhccccccchHHHHHHHHHHH--HHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcC--CCeEE
Q 003088 351 SLDMGLLMAGAKERGELEARVTTLISE--IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--GELQC 426 (849)
Q Consensus 351 ~l~~~~~~~~~~~~g~~e~~l~~l~~~--~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~--~~i~v 426 (849)
.++...... ...+...+...... ...+++.|+||||+|.+ ..+.++.|..+++. ..+++
T Consensus 81 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l-------------~~~~~~~L~~~le~~~~~~~~ 143 (327)
T 1iqp_A 81 ELNASDERG----INVIREKVKEFARTKPIGGASFKIIFLDEADAL-------------TQDAQQALRRTMEMFSSNVRF 143 (327)
T ss_dssp EEETTCHHH----HHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGS-------------CHHHHHHHHHHHHHTTTTEEE
T ss_pred EeeccccCc----hHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcC-------------CHHHHHHHHHHHHhcCCCCeE
Confidence 554432211 01111122222110 01145789999999999 34567788888874 56788
Q ss_pred EEccChHHHHHHhhccHHHHhccccEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhcccccCcchhhH
Q 003088 427 IASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKA 506 (849)
Q Consensus 427 I~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~~~r~~p~~a 506 (849)
|++++... .+.+++.+||..+.|++++.++..+++...+. ..++.++++++..++..+.+. +..+
T Consensus 144 i~~~~~~~-----~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~----~~~~~~~~~~~~~l~~~~~g~------~r~~ 208 (327)
T 1iqp_A 144 ILSCNYSS-----KIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAE----NEGLELTEEGLQAILYIAEGD------MRRA 208 (327)
T ss_dssp EEEESCGG-----GSCHHHHHTEEEEECCCCCHHHHHHHHHHHHH----TTTCEECHHHHHHHHHHHTTC------HHHH
T ss_pred EEEeCCcc-----ccCHHHHhhCcEEEecCCCHHHHHHHHHHHHH----hcCCCCCHHHHHHHHHHCCCC------HHHH
Confidence 88888765 67899999999999999999999999987766 567889999999999887653 3466
Q ss_pred HHHHHHHh
Q 003088 507 IDLVDEAG 514 (849)
Q Consensus 507 i~ll~~a~ 514 (849)
+.+++.+.
T Consensus 209 ~~~l~~~~ 216 (327)
T 1iqp_A 209 INILQAAA 216 (327)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776554
No 53
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.70 E-value=1.9e-16 Score=172.45 Aligned_cols=196 Identities=18% Similarity=0.257 Sum_probs=151.4
Q ss_pred hhhHHHHhhcCCCCccccHHHHHHHHHHHhcCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhh
Q 003088 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLL 357 (849)
Q Consensus 278 ~~l~~~~~~~~l~~iiG~~~~i~~l~~~l~~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~ 357 (849)
.+|.++++|..+++++|+++.++.+..++.....++++|+||+|+|||++|+.+++.+..... +..++.++....
T Consensus 9 ~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~-----~~~~~~~~~~~~ 83 (323)
T 1sxj_B 9 LPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSY-----ADGVLELNASDD 83 (323)
T ss_dssp CCHHHHTCCSSGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGH-----HHHEEEECTTSC
T ss_pred CcHHHhcCCCCHHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcc-----cCCEEEecCccc
Confidence 478899999999999999999999999998877778999999999999999999999753211 223455543321
Q ss_pred hccccccchHHHHHHHHHHHHH-------hcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcC--CCeEEEE
Q 003088 358 MAGAKERGELEARVTTLISEIQ-------KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--GELQCIA 428 (849)
Q Consensus 358 ~~~~~~~g~~e~~l~~l~~~~~-------~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~--~~i~vI~ 428 (849)
.+ ...++.+++.+. .+++.|+||||+|.+ ..+.++.|..+++. +.+.+|+
T Consensus 84 ------~~--~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l-------------~~~~~~~L~~~le~~~~~~~~il 142 (323)
T 1sxj_B 84 ------RG--IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSM-------------TAGAQQALRRTMELYSNSTRFAF 142 (323)
T ss_dssp ------CS--HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGS-------------CHHHHHTTHHHHHHTTTTEEEEE
T ss_pred ------cC--hHHHHHHHHHHHhccccCCCCCceEEEEECcccC-------------CHHHHHHHHHHHhccCCCceEEE
Confidence 11 233445555544 234789999999999 33456777788874 5678888
Q ss_pred ccChHHHHHHhhccHHHHhccccEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhcccccCcchhhHHH
Q 003088 429 STTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAID 508 (849)
Q Consensus 429 at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~~~r~~p~~ai~ 508 (849)
+|+... .+.+++.+||..+.|++|+.++..++|...+. ..++.++++++..++..+.+. |..++.
T Consensus 143 ~~~~~~-----~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~l~~~~~G~------~r~a~~ 207 (323)
T 1sxj_B 143 ACNQSN-----KIIEPLQSQCAILRYSKLSDEDVLKRLLQIIK----LEDVKYTNDGLEAIIFTAEGD------MRQAIN 207 (323)
T ss_dssp EESCGG-----GSCHHHHTTSEEEECCCCCHHHHHHHHHHHHH----HHTCCBCHHHHHHHHHHHTTC------HHHHHH
T ss_pred EeCChh-----hchhHHHhhceEEeecCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHcCCC------HHHHHH
Confidence 887754 77899999999999999999999999988776 457789999999999888664 456777
Q ss_pred HHHHHh
Q 003088 509 LVDEAG 514 (849)
Q Consensus 509 ll~~a~ 514 (849)
+++.+.
T Consensus 208 ~l~~~~ 213 (323)
T 1sxj_B 208 NLQSTV 213 (323)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776665
No 54
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.70 E-value=4.5e-15 Score=180.72 Aligned_cols=179 Identities=17% Similarity=0.204 Sum_probs=130.6
Q ss_pred CCccccHHHHHHHHHHHhcC---------CCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhcc
Q 003088 290 DPVIGRETEIQRIIQILCRR---------TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAG 360 (849)
Q Consensus 290 ~~iiG~~~~i~~l~~~l~~~---------~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~~ 360 (849)
+.++|+++.++.+...+... ...++||+||||||||++|+++|+.+ +..++.++++.+...
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l----------~~~~~~i~~s~~~~~ 527 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL----------GIELLRFDMSEYMER 527 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH----------TCEEEEEEGGGCSSS
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh----------cCCEEEEechhhcch
Confidence 47999999999888876432 12368999999999999999999988 567788888776431
Q ss_pred --------c--cccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCCC-------
Q 003088 361 --------A--KERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGE------- 423 (849)
Q Consensus 361 --------~--~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~~------- 423 (849)
. .+.|.-+ -..+...++...++||||||++.+ ..++++.|+.+++.+.
T Consensus 528 ~~~~~l~g~~~g~~g~~~--~~~l~~~~~~~~~~vl~lDEi~~~-------------~~~~~~~Ll~~le~~~~~~~~g~ 592 (758)
T 1r6b_X 528 HTVSRLIGAPPGYVGFDQ--GGLLTDAVIKHPHAVLLLDEIEKA-------------HPDVFNILLQVMDNGTLTDNNGR 592 (758)
T ss_dssp SCCSSSCCCCSCSHHHHH--TTHHHHHHHHCSSEEEEEETGGGS-------------CHHHHHHHHHHHHHSEEEETTTE
T ss_pred hhHhhhcCCCCCCcCccc--cchHHHHHHhCCCcEEEEeCcccc-------------CHHHHHHHHHHhcCcEEEcCCCC
Confidence 1 1222111 122344555667899999999998 5678999999998653
Q ss_pred ------eEEEEccChHH---------HH---------H--HhhccHHHHhccc-cEEecCCCHHHHHHHHHHHHHHHHhh
Q 003088 424 ------LQCIASTTQDE---------HR---------T--QFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEAH 476 (849)
Q Consensus 424 ------i~vI~at~~~~---------~~---------~--~~~~d~al~~Rf~-~i~~~~ps~~e~~~iL~~~~~~~~~~ 476 (849)
+++|+|||... |. . .-.++++|.+||. .|.|++|+.+++..|+..++.++...
T Consensus 593 ~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~ 672 (758)
T 1r6b_X 593 KADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQ 672 (758)
T ss_dssp EEECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHH
T ss_pred EEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHHHHHHH
Confidence 56899998621 00 0 0156799999995 79999999999999999877654321
Q ss_pred -----cCCccCHHHHHHHHHhh
Q 003088 477 -----HNCKFTLEAINAAVHLS 493 (849)
Q Consensus 477 -----~~~~i~~~~l~~~a~ls 493 (849)
..+.++++++..++..+
T Consensus 673 ~~~~~~~~~~~~~a~~~l~~~~ 694 (758)
T 1r6b_X 673 LDQKGVSLEVSQEARNWLAEKG 694 (758)
T ss_dssp HHHTTEEEEECHHHHHHHHHHH
T ss_pred HHHCCcEEEeCHHHHHHHHHhC
Confidence 24678999999888754
No 55
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.70 E-value=3.6e-17 Score=180.41 Aligned_cols=156 Identities=22% Similarity=0.368 Sum_probs=118.7
Q ss_pred ccccccHHHHHHHHHHHHH--------hhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeecccccc
Q 003088 629 KRVIGQDEAVAAISRAVKR--------SRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYME 700 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~--------~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~ 700 (849)
+.|.|.+++++.|...+.. ...|...| ..+|||||||||||++|+++|..+ +.+|+.++++++..
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~p----rGvLLyGPPGTGKTlLAkAiA~e~---~~~fi~v~~s~l~s 254 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPP----KGVILYGAPGTGKTLLAKAVANQT---SATFLRIVGSELIQ 254 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCC----SEEEEESSTTTTHHHHHHHHHHHH---TCEEEEEESGGGCC
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCC----CCCceECCCCchHHHHHHHHHHHh---CCCEEEEEHHHhhh
Confidence 5588999999998888754 23455543 349999999999999999999997 67899999988754
Q ss_pred ccccccccCCCCCccccccC--cchhHHHHhCCCeEEEEeCccccCH--------------HHHHHHHHHhhcCeeecCC
Q 003088 701 RHTVSKLIGSPPGYVGYEEG--GLLTEAIRRRPFTLLLLDEIEKAHP--------------DIFNILLQVFEDGHLTDSH 764 (849)
Q Consensus 701 ~~~~~~l~g~~~g~vg~~~~--~~l~~~i~~~~~~vl~lDEid~l~~--------------~~~~~Ll~~le~g~~~~~~ 764 (849)
.|+|..+. ..++...++..+|||||||+|.+.. .+++.||..|+...
T Consensus 255 ------------k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~----- 317 (437)
T 4b4t_I 255 ------------KYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFD----- 317 (437)
T ss_dssp ------------SSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCC-----
T ss_pred ------------ccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcC-----
Confidence 36676653 2244445566679999999997722 35667777776421
Q ss_pred CceeecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhh--ccccEEEcCCCCHHH
Q 003088 765 GRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLN--RIDEVVVFRSLEKAQ 842 (849)
Q Consensus 765 g~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~--R~d~~i~f~pl~~~~ 842 (849)
...+++||+|||.... ++|+|+. |||..|.|+.++.++
T Consensus 318 ----~~~~ViVIaATNrpd~------------------------------------LDpALlRpGRfD~~I~v~lPd~~~ 357 (437)
T 4b4t_I 318 ----DRGDVKVIMATNKIET------------------------------------LDPALIRPGRIDRKILFENPDLST 357 (437)
T ss_dssp ----CSSSEEEEEEESCSTT------------------------------------CCTTSSCTTTEEEEECCCCCCHHH
T ss_pred ----CCCCEEEEEeCCChhh------------------------------------cCHHHhcCCceeEEEEcCCcCHHH
Confidence 1247899999997421 7899996 999999999999999
Q ss_pred HccccC
Q 003088 843 VCQLPL 848 (849)
Q Consensus 843 ~~~I~~ 848 (849)
..+|++
T Consensus 358 R~~Il~ 363 (437)
T 4b4t_I 358 KKKILG 363 (437)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888875
No 56
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.69 E-value=1.3e-16 Score=176.05 Aligned_cols=207 Identities=15% Similarity=0.169 Sum_probs=148.3
Q ss_pred HhhhhhhHHHHhhcCCCCccccHHHHHHHHHHHhcCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEee
Q 003088 274 EQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD 353 (849)
Q Consensus 274 ~~~~~~l~~~~~~~~l~~iiG~~~~i~~l~~~l~~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~ 353 (849)
.....+|.++++|..+++++|+++.++.+...+.....++++|+||||||||++|+++++.+.... .....++.++
T Consensus 21 ~~~~~~~~~k~~p~~~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~----~~~~~~~~~~ 96 (353)
T 1sxj_D 21 SLAQQPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPD----LMKSRILELN 96 (353)
T ss_dssp -----CHHHHTCCSSTTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHH----HHTTSEEEEC
T ss_pred cccCccHHHhcCCCCHHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCc----ccccceEEEc
Confidence 344568999999999999999999999999999887777899999999999999999999975310 0123444554
Q ss_pred hhhhhccccccchHHHHHHHHHHH-----------H-HhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcC
Q 003088 354 MGLLMAGAKERGELEARVTTLISE-----------I-QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR 421 (849)
Q Consensus 354 ~~~~~~~~~~~g~~e~~l~~l~~~-----------~-~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~ 421 (849)
..... ..+.+.+.+...... . ....+.||||||+|.+ ....++.|+..++.
T Consensus 97 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l-------------~~~~~~~Ll~~le~ 159 (353)
T 1sxj_D 97 ASDER----GISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSM-------------TADAQSALRRTMET 159 (353)
T ss_dssp SSSCC----CHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGS-------------CHHHHHHHHHHHHH
T ss_pred ccccc----chHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCcc-------------CHHHHHHHHHHHHh
Confidence 43211 011111112111110 0 0124579999999999 34556777777774
Q ss_pred --CCeEEEEccChHHHHHHhhccHHHHhccccEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhccccc
Q 003088 422 --GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISD 499 (849)
Q Consensus 422 --~~i~vI~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~~~ 499 (849)
....+|++|+... .+.+++++||..+.|++|+.++...++...+. ..++.++++++..++..+.+.
T Consensus 160 ~~~~~~~il~~~~~~-----~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~----~~~~~i~~~~l~~l~~~~~G~--- 227 (353)
T 1sxj_D 160 YSGVTRFCLICNYVT-----RIIDPLASQCSKFRFKALDASNAIDRLRFISE----QENVKCDDGVLERILDISAGD--- 227 (353)
T ss_dssp TTTTEEEEEEESCGG-----GSCHHHHHHSEEEECCCCCHHHHHHHHHHHHH----TTTCCCCHHHHHHHHHHTSSC---
T ss_pred cCCCceEEEEeCchh-----hCcchhhccCceEEeCCCCHHHHHHHHHHHHH----HhCCCCCHHHHHHHHHHcCCC---
Confidence 3567777777665 68899999999999999999999999987765 567889999999999988764
Q ss_pred CcchhhHHHHHHHHhhH
Q 003088 500 RYLPDKAIDLVDEAGSR 516 (849)
Q Consensus 500 r~~p~~ai~ll~~a~~~ 516 (849)
+..++.+++.+...
T Consensus 228 ---~r~~~~~l~~~~~~ 241 (353)
T 1sxj_D 228 ---LRRGITLLQSASKG 241 (353)
T ss_dssp ---HHHHHHHHHHTHHH
T ss_pred ---HHHHHHHHHHHHHh
Confidence 35677777766543
No 57
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.69 E-value=9.5e-16 Score=167.24 Aligned_cols=185 Identities=21% Similarity=0.190 Sum_probs=136.5
Q ss_pred HHHHhhcCCCCccccHHHHHHHHHHHhc-----CCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehh
Q 003088 281 TARASEELIDPVIGRETEIQRIIQILCR-----RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMG 355 (849)
Q Consensus 281 ~~~~~~~~l~~iiG~~~~i~~l~~~l~~-----~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~ 355 (849)
.++++|..+++++|++..++.+...+.. ....+++|+||||||||++|+++++.+ +.+++.+++.
T Consensus 3 ~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~----------~~~~~~~~~~ 72 (324)
T 1hqc_A 3 DLALRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL----------GVNLRVTSGP 72 (324)
T ss_dssp --CCCCCSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHH----------TCCEEEECTT
T ss_pred ccccCcccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEecc
Confidence 3567888999999999999988887643 345789999999999999999999987 4455555554
Q ss_pred hhhccccccchHHHHHHHHHHHHHh--cCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCC-----------
Q 003088 356 LLMAGAKERGELEARVTTLISEIQK--SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG----------- 422 (849)
Q Consensus 356 ~~~~~~~~~g~~e~~l~~l~~~~~~--~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~----------- 422 (849)
.+.. ...++..+.. ..+.+|||||+|.+ ....++.|...++..
T Consensus 73 ~~~~-----------~~~l~~~l~~~~~~~~~l~lDEi~~l-------------~~~~~~~L~~~l~~~~~~~v~~~~~~ 128 (324)
T 1hqc_A 73 AIEK-----------PGDLAAILANSLEEGDILFIDEIHRL-------------SRQAEEHLYPAMEDFVMDIVIGQGPA 128 (324)
T ss_dssp TCCS-----------HHHHHHHHTTTCCTTCEEEETTTTSC-------------CHHHHHHHHHHHHHSEEEECCSSSSS
T ss_pred ccCC-----------hHHHHHHHHHhccCCCEEEEECCccc-------------ccchHHHHHHHHHhhhhHHhcccccc
Confidence 3311 1122233333 45679999999999 344566666666543
Q ss_pred ---------CeEEEEccChHHHHHHhhccHHHHhccc-cEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHh
Q 003088 423 ---------ELQCIASTTQDEHRTQFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHL 492 (849)
Q Consensus 423 ---------~i~vI~at~~~~~~~~~~~d~al~~Rf~-~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~l 492 (849)
.+++|++||... .++++|.+||. .+.+++|+.+++.+++..... ..++.++++++..++..
T Consensus 129 ~~~~~~~~~~~~~i~~t~~~~-----~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~----~~~~~~~~~~~~~l~~~ 199 (324)
T 1hqc_A 129 ARTIRLELPRFTLIGATTRPG-----LITAPLLSRFGIVEHLEYYTPEELAQGVMRDAR----LLGVRITEEAALEIGRR 199 (324)
T ss_dssp CCCEEEECCCCEEEEEESCCS-----SCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHH----TTTCCCCHHHHHHHHHH
T ss_pred ccccccCCCCEEEEEeCCCcc-----cCCHHHHhcccEEEecCCCCHHHHHHHHHHHHH----hcCCCCCHHHHHHHHHH
Confidence 468999999875 67788999995 899999999999999887765 45778999999988887
Q ss_pred hhcccccCcchhhHHHHHHHHh
Q 003088 493 SARYISDRYLPDKAIDLVDEAG 514 (849)
Q Consensus 493 s~~~~~~r~~p~~ai~ll~~a~ 514 (849)
+.++ |..+..+++.+.
T Consensus 200 ~~G~------~r~l~~~l~~~~ 215 (324)
T 1hqc_A 200 SRGT------MRVAKRLFRRVR 215 (324)
T ss_dssp SCSC------HHHHHHHHHHHT
T ss_pred ccCC------HHHHHHHHHHHH
Confidence 6543 445556655554
No 58
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.69 E-value=7.3e-17 Score=179.63 Aligned_cols=156 Identities=24% Similarity=0.363 Sum_probs=119.2
Q ss_pred ccccccHHHHHHHHHHHHH--------hhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeecccccc
Q 003088 629 KRVIGQDEAVAAISRAVKR--------SRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYME 700 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~--------~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~ 700 (849)
+.|.|.+++++.|...+.. ...|...|. .+|||||||||||++|+++|..+ +.+|+.++++++..
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~ppr----GILLyGPPGTGKTlLAkAiA~e~---~~~fi~vs~s~L~s 281 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPK----GILLYGPPGTGKTLCARAVANRT---DATFIRVIGSELVQ 281 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCS----EEEECSCTTSSHHHHHHHHHHHH---TCEEEEEEGGGGCC
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCC----ceEeeCCCCCcHHHHHHHHHhcc---CCCeEEEEhHHhhc
Confidence 5689999999998887643 344655443 49999999999999999999997 67899999988754
Q ss_pred ccccccccCCCCCccccccCc--chhHHHHhCCCeEEEEeCccccCH--------------HHHHHHHHHhhcCeeecCC
Q 003088 701 RHTVSKLIGSPPGYVGYEEGG--LLTEAIRRRPFTLLLLDEIEKAHP--------------DIFNILLQVFEDGHLTDSH 764 (849)
Q Consensus 701 ~~~~~~l~g~~~g~vg~~~~~--~l~~~i~~~~~~vl~lDEid~l~~--------------~~~~~Ll~~le~g~~~~~~ 764 (849)
.|+|..+.. .++...+....|||||||+|.+.. .+++.||..|+...
T Consensus 282 ------------k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~----- 344 (467)
T 4b4t_H 282 ------------KYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFD----- 344 (467)
T ss_dssp ------------CSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSC-----
T ss_pred ------------ccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccC-----
Confidence 367766532 244444556679999999997732 25677777777521
Q ss_pred CceeecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhh--ccccEEEcCCCCHHH
Q 003088 765 GRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLN--RIDEVVVFRSLEKAQ 842 (849)
Q Consensus 765 g~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~--R~d~~i~f~pl~~~~ 842 (849)
...+++||+|||.... ++|+|+. |||..|.|+.++.++
T Consensus 345 ----~~~~ViVIaATNrpd~------------------------------------LDpALlRpGRFD~~I~i~lPd~~~ 384 (467)
T 4b4t_H 345 ----PRGNIKVMFATNRPNT------------------------------------LDPALLRPGRIDRKVEFSLPDLEG 384 (467)
T ss_dssp ----CTTTEEEEEECSCTTS------------------------------------BCHHHHSTTTCCEEECCCCCCHHH
T ss_pred ----CCCcEEEEeCCCCccc------------------------------------CChhhhccccccEEEEeCCcCHHH
Confidence 2347899999997421 7899986 999999999999999
Q ss_pred HccccC
Q 003088 843 VCQLPL 848 (849)
Q Consensus 843 ~~~I~~ 848 (849)
..+|++
T Consensus 385 R~~Ilk 390 (467)
T 4b4t_H 385 RANIFR 390 (467)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888875
No 59
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.69 E-value=2.6e-16 Score=175.00 Aligned_cols=208 Identities=20% Similarity=0.277 Sum_probs=141.5
Q ss_pred hhhHHHHhhcC-CCCccccHHHHHHH---HHHHhcCCC--CCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEE
Q 003088 278 VDLTARASEEL-IDPVIGRETEIQRI---IQILCRRTK--NNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMS 351 (849)
Q Consensus 278 ~~l~~~~~~~~-l~~iiG~~~~i~~l---~~~l~~~~~--~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~ 351 (849)
..+.++++|.. |++++|++..++.+ ...+..... .++||+||||||||++|+++++.+.. ..| ++.
T Consensus 31 l~l~~~~~p~~~~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~-~~~-------~~~ 102 (368)
T 3uk6_A 31 LGLDDALEPRQASQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGP-DTP-------FTA 102 (368)
T ss_dssp CCBCTTSCBCSEETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCS-SCC-------EEE
T ss_pred cCcccccCcCcchhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcc-cCC-------ccc
Confidence 45567778887 99999999987764 444444433 48999999999999999999999842 222 222
Q ss_pred eehhhhhc-----------------------------------------------cccccchHHHHHHHHHHHHHh----
Q 003088 352 LDMGLLMA-----------------------------------------------GAKERGELEARVTTLISEIQK---- 380 (849)
Q Consensus 352 l~~~~~~~-----------------------------------------------~~~~~g~~e~~l~~l~~~~~~---- 380 (849)
++...+.. -..+.|++...++..+..+..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 182 (368)
T 3uk6_A 103 IAGSEIFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWRE 182 (368)
T ss_dssp EEGGGGSCSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhh
Confidence 22111000 001123334445555544332
Q ss_pred cC-----CeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCCC--eEEEEcc---------ChHHHHHHhhccHH
Q 003088 381 SG-----DVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGE--LQCIAST---------TQDEHRTQFEKDKA 444 (849)
Q Consensus 381 ~~-----~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~~--i~vI~at---------~~~~~~~~~~~d~a 444 (849)
.+ ++||||||+|.+ ..++++.|+..++... ++++++. +... ...++++
T Consensus 183 ~g~~~~~~~vl~IDEi~~l-------------~~~~~~~L~~~le~~~~~~~ii~t~~~~~~i~~t~~~~---~~~l~~~ 246 (368)
T 3uk6_A 183 EGKAEIIPGVLFIDEVHML-------------DIESFSFLNRALESDMAPVLIMATNRGITRIRGTSYQS---PHGIPID 246 (368)
T ss_dssp HTC---CBCEEEEESGGGS-------------BHHHHHHHHHHTTCTTCCEEEEEESCSEEECBTSSCEE---ETTCCHH
T ss_pred hccccccCceEEEhhcccc-------------ChHHHHHHHHHhhCcCCCeeeeecccceeeeeccCCCC---cccCCHH
Confidence 22 469999999999 4567888888887543 3333332 2111 2368899
Q ss_pred HHhccccEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhcccccCcchhhHHHHHHHHhhHHH
Q 003088 445 LARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAH 518 (849)
Q Consensus 445 l~~Rf~~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~~~r~~p~~ai~ll~~a~~~~~ 518 (849)
|++||..+.|++|+.+++.+||+..+. ..++.++++++..++..+.. ..+..++.+++.|+..+.
T Consensus 247 l~sR~~~i~~~~~~~~e~~~il~~~~~----~~~~~~~~~~l~~l~~~~~~-----G~~r~~~~ll~~a~~~A~ 311 (368)
T 3uk6_A 247 LLDRLLIVSTTPYSEKDTKQILRIRCE----EEDVEMSEDAYTVLTRIGLE-----TSLRYAIQLITAASLVCR 311 (368)
T ss_dssp HHTTEEEEEECCCCHHHHHHHHHHHHH----HTTCCBCHHHHHHHHHHHHH-----SCHHHHHHHHHHHHHHHH
T ss_pred HHhhccEEEecCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988776 46788999999999998873 234688899998877654
No 60
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.68 E-value=8.2e-17 Score=180.12 Aligned_cols=156 Identities=24% Similarity=0.364 Sum_probs=118.9
Q ss_pred ccccccHHHHHHHHHHHHH--------hhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeecccccc
Q 003088 629 KRVIGQDEAVAAISRAVKR--------SRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYME 700 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~--------~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~ 700 (849)
+.|.|.+++++.|...+.. ...|...| ..+|||||||||||++|+++|..+ +.+|+.++++++..
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~p----rGvLL~GPPGtGKTllAkAiA~e~---~~~~~~v~~s~l~s 253 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPP----KGVLLYGPPGTGKTLLAKAVAATI---GANFIFSPASGIVD 253 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCC----CEEEEESCTTSSHHHHHHHHHHHH---TCEEEEEEGGGTCC
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCC----CeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEehhhhcc
Confidence 5688999999998888754 23455543 349999999999999999999997 67899999988754
Q ss_pred ccccccccCCCCCccccccC--cchhHHHHhCCCeEEEEeCccccCH--------------HHHHHHHHHhhcCeeecCC
Q 003088 701 RHTVSKLIGSPPGYVGYEEG--GLLTEAIRRRPFTLLLLDEIEKAHP--------------DIFNILLQVFEDGHLTDSH 764 (849)
Q Consensus 701 ~~~~~~l~g~~~g~vg~~~~--~~l~~~i~~~~~~vl~lDEid~l~~--------------~~~~~Ll~~le~g~~~~~~ 764 (849)
.|+|..+. ..++...+...+|||||||+|.+.. .+.+.||..|+...
T Consensus 254 ------------k~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~----- 316 (437)
T 4b4t_L 254 ------------KYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFD----- 316 (437)
T ss_dssp ------------SSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSS-----
T ss_pred ------------ccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhccc-----
Confidence 36666542 2244444566679999999998731 25778888887622
Q ss_pred CceeecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhh--ccccEEEcCCCCHHH
Q 003088 765 GRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLN--RIDEVVVFRSLEKAQ 842 (849)
Q Consensus 765 g~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~--R~d~~i~f~pl~~~~ 842 (849)
...+++||+|||.... ++|+|+. |||..|.|+.++.++
T Consensus 317 ----~~~~vivI~ATNrp~~------------------------------------LDpAllRpGRfD~~I~i~lPd~~~ 356 (437)
T 4b4t_L 317 ----NLGQTKIIMATNRPDT------------------------------------LDPALLRPGRLDRKVEIPLPNEAG 356 (437)
T ss_dssp ----CTTSSEEEEEESSTTS------------------------------------SCTTTTSTTSEEEEECCCCCCHHH
T ss_pred ----CCCCeEEEEecCCchh------------------------------------hCHHHhCCCccceeeecCCcCHHH
Confidence 1247899999997421 7899984 699999999999999
Q ss_pred HccccC
Q 003088 843 VCQLPL 848 (849)
Q Consensus 843 ~~~I~~ 848 (849)
..+|++
T Consensus 357 R~~Il~ 362 (437)
T 4b4t_L 357 RLEIFK 362 (437)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888875
No 61
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.68 E-value=8.1e-17 Score=180.03 Aligned_cols=156 Identities=22% Similarity=0.348 Sum_probs=117.8
Q ss_pred ccccccHHHHHHHHHHHHH--------hhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeecccccc
Q 003088 629 KRVIGQDEAVAAISRAVKR--------SRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYME 700 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~--------~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~ 700 (849)
+.|.|.+++++.|...+.. ...|.+.| ..+|||||||||||++|+++|..+ +.+|+.++++++..
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~p----rGvLLyGPPGTGKTllAkAiA~e~---~~~f~~v~~s~l~~ 253 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAP----KGALMYGPPGTGKTLLARACAAQT---NATFLKLAAPQLVQ 253 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCC----CEEEEESCTTSSHHHHHHHHHHHH---TCEEEEEEGGGGCS
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCC----CeeEEECcCCCCHHHHHHHHHHHh---CCCEEEEehhhhhh
Confidence 5689999999988887643 34465544 349999999999999999999997 67899999988754
Q ss_pred ccccccccCCCCCccccccC--cchhHHHHhCCCeEEEEeCccccC-----------H---HHHHHHHHHhhcCeeecCC
Q 003088 701 RHTVSKLIGSPPGYVGYEEG--GLLTEAIRRRPFTLLLLDEIEKAH-----------P---DIFNILLQVFEDGHLTDSH 764 (849)
Q Consensus 701 ~~~~~~l~g~~~g~vg~~~~--~~l~~~i~~~~~~vl~lDEid~l~-----------~---~~~~~Ll~~le~g~~~~~~ 764 (849)
.|+|..+. ..++...+...+|||||||+|.+. . .+.+.||+.|+.-.
T Consensus 254 ------------~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~----- 316 (434)
T 4b4t_M 254 ------------MYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFS----- 316 (434)
T ss_dssp ------------SCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSC-----
T ss_pred ------------cccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccC-----
Confidence 36676552 123344445566999999999761 1 25677888887522
Q ss_pred CceeecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhh--ccccEEEcCCCCHHH
Q 003088 765 GRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLN--RIDEVVVFRSLEKAQ 842 (849)
Q Consensus 765 g~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~--R~d~~i~f~pl~~~~ 842 (849)
...+++||+|||.... ++|+|+. |||..|.|++++.++
T Consensus 317 ----~~~~ViVIaaTNrp~~------------------------------------LD~AllRpGRfD~~I~i~lPd~~~ 356 (434)
T 4b4t_M 317 ----SDDRVKVLAATNRVDV------------------------------------LDPALLRSGRLDRKIEFPLPSEDS 356 (434)
T ss_dssp ----SSCSSEEEEECSSCCC------------------------------------CCTTTCSTTSEEEEEECCCCCHHH
T ss_pred ----CCCCEEEEEeCCCchh------------------------------------cCHhHhcCCceeEEEEeCCcCHHH
Confidence 1236889999997421 7899986 999999999999999
Q ss_pred HccccC
Q 003088 843 VCQLPL 848 (849)
Q Consensus 843 ~~~I~~ 848 (849)
..+|++
T Consensus 357 R~~Il~ 362 (434)
T 4b4t_M 357 RAQILQ 362 (434)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888875
No 62
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.67 E-value=2.9e-15 Score=171.64 Aligned_cols=147 Identities=22% Similarity=0.309 Sum_probs=95.5
Q ss_pred ccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCC-------CCceeEeeccccccc
Q 003088 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGS-------ESSMLRLDMSEYMER 701 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~-------~~~~i~i~~~~~~~~ 701 (849)
+.++|++..++.+...+.+. ...++||+||||||||++|+++|+.+... +.+++.++++
T Consensus 180 d~iiGr~~~i~~l~~~l~r~---------~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~----- 245 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRR---------TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG----- 245 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCS---------SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--------
T ss_pred CCccCcHHHHHHHHHHHhcc---------CCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC-----
Confidence 56999999999988777531 12359999999999999999999997442 4457777765
Q ss_pred cccccccCCCCCccccccC--cchhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEec
Q 003088 702 HTVSKLIGSPPGYVGYEEG--GLLTEAIRRRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTS 779 (849)
Q Consensus 702 ~~~~~l~g~~~g~vg~~~~--~~l~~~i~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ts 779 (849)
..|.|..+. ..+.+.+....++||||| ...++++.|+.+|+.| ++++|++|
T Consensus 246 ----------~~~~g~~e~~~~~~~~~~~~~~~~iLfiD----~~~~a~~~L~~~L~~g-------------~v~vI~at 298 (468)
T 3pxg_A 246 ----------TKYRGEFEDRLKKVMDEIRQAGNIILFID----AAIDASNILKPSLARG-------------ELQCIGAT 298 (468)
T ss_dssp -----------------CTTHHHHHHHHHTCCCCEEEEC----C--------CCCTTSS-------------SCEEEEEC
T ss_pred ----------ccccchHHHHHHHHHHHHHhcCCeEEEEe----CchhHHHHHHHhhcCC-------------CEEEEecC
Confidence 123343221 123444555667899999 6677899999999864 57899999
Q ss_pred CCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHHHccccC
Q 003088 780 NVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQLPL 848 (849)
Q Consensus 780 n~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~I~~ 848 (849)
|...-. + . -.+++.|.+||+ +|.|.+++.+++..|++
T Consensus 299 ~~~e~~--~-----------------------~------~~~~~al~~Rf~-~i~v~~p~~e~~~~iL~ 335 (468)
T 3pxg_A 299 TLDEYR--K-----------------------Y------IEKDAALERRFQ-PIQVDQPSVDESIQILQ 335 (468)
T ss_dssp CTTTTH--H-----------------------H------HTTCSHHHHSEE-EEECCCCCHHHHHHHHH
T ss_pred CHHHHH--H-----------------------H------hhcCHHHHHhCc-cceeCCCCHHHHHHHHH
Confidence 974210 0 0 016789999996 69999999999888763
No 63
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.67 E-value=9.4e-16 Score=158.86 Aligned_cols=201 Identities=18% Similarity=0.176 Sum_probs=146.1
Q ss_pred hhHHHHhhcCCCCccccHHHHHHHHHHHhcCCCC-CCeEeCCCCChHHHHHHHHHHHhhhCCCCcccc------------
Q 003088 279 DLTARASEELIDPVIGRETEIQRIIQILCRRTKN-NPILLGESGVGKTAIAEGLAIRIVQAEVPVFLL------------ 345 (849)
Q Consensus 279 ~l~~~~~~~~l~~iiG~~~~i~~l~~~l~~~~~~-niLL~GppGtGKT~la~~la~~l~~~~~p~~~~------------ 345 (849)
.|.++++|..+++++|++++++.+...+.....+ .++|+||+|+|||++++.+++.+..........
T Consensus 12 ~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (250)
T 1njg_A 12 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQ 91 (250)
T ss_dssp CHHHHTCCCSGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHT
T ss_pred HHhhccCCccHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhc
Confidence 5788899999999999999999999988765543 589999999999999999999885432110000
Q ss_pred --CCeEEEeehhhhhccccccchHHHHHHHHHHHHH----hcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhh
Q 003088 346 --SKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL 419 (849)
Q Consensus 346 --~~~~~~l~~~~~~~~~~~~g~~e~~l~~l~~~~~----~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~l 419 (849)
...++.++... ......+..+++.+. ..++.+|||||+|.+ ..+.++.|...+
T Consensus 92 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l-------------~~~~~~~l~~~l 150 (250)
T 1njg_A 92 GRFVDLIEIDAAS--------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML-------------SRHSFNALLKTL 150 (250)
T ss_dssp TCCSSEEEEETTC--------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGS-------------CHHHHHHHHHHH
T ss_pred cCCcceEEecCcc--------cccHHHHHHHHHHhhhchhcCCceEEEEECcccc-------------cHHHHHHHHHHH
Confidence 01122222110 111233445554433 234689999999998 344566777777
Q ss_pred cC--CCeEEEEccChHHHHHHhhccHHHHhccccEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhccc
Q 003088 420 GR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497 (849)
Q Consensus 420 e~--~~i~vI~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~ 497 (849)
++ ..+.+|++|+... .+++.+.+|+..+.+++++.++..+++...+. ..++.++++++..++..+.+
T Consensus 151 ~~~~~~~~~i~~t~~~~-----~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~----~~~~~~~~~~~~~l~~~~~G-- 219 (250)
T 1njg_A 151 EEPPEHVKFLLATTDPQ-----KLPVTILSRCLQFHLKALDVEQIRHQLEHILN----EEHIAHEPRALQLLARAAEG-- 219 (250)
T ss_dssp HSCCTTEEEEEEESCGG-----GSCHHHHTTSEEEECCCCCHHHHHHHHHHHHH----HTTCCBCHHHHHHHHHHHTT--
T ss_pred hcCCCceEEEEEeCChH-----hCCHHHHHHhhhccCCCCCHHHHHHHHHHHHH----hcCCCCCHHHHHHHHHHcCC--
Confidence 64 4688888888765 67889999999999999999999999987766 45778999999998888765
Q ss_pred ccCcchhhHHHHHHHHhh
Q 003088 498 SDRYLPDKAIDLVDEAGS 515 (849)
Q Consensus 498 ~~r~~p~~ai~ll~~a~~ 515 (849)
.|..+..+++.++.
T Consensus 220 ----~~~~~~~~~~~~~~ 233 (250)
T 1njg_A 220 ----SLRDALSLTDQAIA 233 (250)
T ss_dssp ----CHHHHHHHHHHHHT
T ss_pred ----CHHHHHHHHHHHHh
Confidence 45677777777753
No 64
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.67 E-value=1.5e-16 Score=175.87 Aligned_cols=203 Identities=12% Similarity=0.150 Sum_probs=144.3
Q ss_pred hhHHHHhhcCCCCccccHHHHHHHHHHH-hcCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccc-c-----------
Q 003088 279 DLTARASEELIDPVIGRETEIQRIIQIL-CRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFL-L----------- 345 (849)
Q Consensus 279 ~l~~~~~~~~l~~iiG~~~~i~~l~~~l-~~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~-~----------- 345 (849)
.|+++|+|.+|++++|+++.++.+..++ .....++++|+||+|+||||+++++++.+......... .
T Consensus 3 ~w~~kyrP~~~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~ 82 (354)
T 1sxj_E 3 LWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRK 82 (354)
T ss_dssp -CTTTTCCCSGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC---------------
T ss_pred cchhccCCCCHHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccccc
Confidence 6899999999999999999999999988 66666779999999999999999999976432211000 0
Q ss_pred -------CCeEEEeehhhhhccccccchHHHHHHHHHHHHH--------------hcCCeEEEEcCcchhhhCCCCCCCC
Q 003088 346 -------SKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ--------------KSGDVILFIDEVHTLIGSGTVGRGN 404 (849)
Q Consensus 346 -------~~~~~~l~~~~~~~~~~~~g~~e~~l~~l~~~~~--------------~~~~~ILfIDEi~~l~~~~~~~~~~ 404 (849)
...++.++.... +.. . ...++.+++.+. ..++.|++|||++.|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~--~~~---~-~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L---------- 146 (354)
T 1sxj_E 83 LELNVVSSPYHLEITPSDM--GNN---D-RIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSL---------- 146 (354)
T ss_dssp ---CCEECSSEEEECCC------C---C-HHHHHHHHHHHTTTTC------------CCEEEEEECTTSS----------
T ss_pred ceeeeecccceEEecHhhc--CCc---c-hHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCcccc----------
Confidence 011222221110 000 0 012334444332 125679999999997
Q ss_pred CCccHHHHHHHhhhhcC--CCeEEEEccChHHHHHHhhccHHHHhccccEEecCCCHHHHHHHHHHHHHHHHhhcCCccC
Q 003088 405 KGTGLDISNLLKPSLGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFT 482 (849)
Q Consensus 405 ~~~~~~~~~~L~~~le~--~~i~vI~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~ 482 (849)
+.+.++.|...++. .+..+|.+|+..+ .+.+++++||..+.|++|+.++..++|+..++ ..++.++
T Consensus 147 ---~~~~~~~L~~~le~~~~~~~~Il~t~~~~-----~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~ 214 (354)
T 1sxj_E 147 ---TKDAQAALRRTMEKYSKNIRLIMVCDSMS-----PIIAPIKSQCLLIRCPAPSDSEISTILSDVVT----NERIQLE 214 (354)
T ss_dssp ---CHHHHHHHHHHHHHSTTTEEEEEEESCSC-----SSCHHHHTTSEEEECCCCCHHHHHHHHHHHHH----HHTCEEC
T ss_pred ---CHHHHHHHHHHHHhhcCCCEEEEEeCCHH-----HHHHHHHhhceEEecCCcCHHHHHHHHHHHHH----HcCCCCC
Confidence 34566777777763 4577787777665 67899999999999999999999999988876 5678899
Q ss_pred -HHHHHHHHHhhhcccccCcchhhHHHHHHHHhh
Q 003088 483 -LEAINAAVHLSARYISDRYLPDKAIDLVDEAGS 515 (849)
Q Consensus 483 -~~~l~~~a~ls~~~~~~r~~p~~ai~ll~~a~~ 515 (849)
++++..++..+.+.+ .+++.+++.+..
T Consensus 215 ~~~~l~~i~~~~~G~~------r~a~~~l~~~~~ 242 (354)
T 1sxj_E 215 TKDILKRIAQASNGNL------RVSLLMLESMAL 242 (354)
T ss_dssp CSHHHHHHHHHHTTCH------HHHHHHHTHHHH
T ss_pred cHHHHHHHHHHcCCCH------HHHHHHHHHHHH
Confidence 999999998887644 477777776654
No 65
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.67 E-value=8.8e-16 Score=170.81 Aligned_cols=202 Identities=18% Similarity=0.177 Sum_probs=149.2
Q ss_pred hhhHHHHhhcCCCCccccHHHHHHHHHHHhcCCCCC-CeEeCCCCChHHHHHHHHHHHhhhCCCCcc--c----------
Q 003088 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEVPVF--L---------- 344 (849)
Q Consensus 278 ~~l~~~~~~~~l~~iiG~~~~i~~l~~~l~~~~~~n-iLL~GppGtGKT~la~~la~~l~~~~~p~~--~---------- 344 (849)
.+|.++++|..+++++|++++++.+...+......+ ++|+||+|+|||++|+.+++.+........ .
T Consensus 4 ~~l~~k~rp~~~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~ 83 (373)
T 1jr3_A 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIE 83 (373)
T ss_dssp CCHHHHTCCCSTTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHH
T ss_pred HHHHHhhCCCchhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHh
Confidence 368899999999999999999999999887766555 689999999999999999999854321100 0
Q ss_pred --cCCeEEEeehhhhhccccccchHHHHHHHHHHHHHh----cCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhh
Q 003088 345 --LSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPS 418 (849)
Q Consensus 345 --~~~~~~~l~~~~~~~~~~~~g~~e~~l~~l~~~~~~----~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~ 418 (849)
....++.++... .....+ ++.+++.+.. +++.|+||||+|.+ ..+.++.|...
T Consensus 84 ~~~~~~~~~~~~~~----~~~~~~----~~~l~~~~~~~~~~~~~~vliiDe~~~l-------------~~~~~~~Ll~~ 142 (373)
T 1jr3_A 84 QGRFVDLIEIDAAS----RTKVED----TRDLLDNVQYAPARGRFKVYLIDEVHML-------------SRHSFNALLKT 142 (373)
T ss_dssp TSCCSSCEEEETTC----SCCSSC----HHHHHHHTTSCCSSSSSEEEEEECGGGS-------------CHHHHHHHHHH
T ss_pred ccCCCceEEecccc----cCCHHH----HHHHHHHHhhccccCCeEEEEEECcchh-------------cHHHHHHHHHH
Confidence 001223333211 011122 4455555442 34689999999999 34567788888
Q ss_pred hcC--CCeEEEEccChHHHHHHhhccHHHHhccccEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhcc
Q 003088 419 LGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496 (849)
Q Consensus 419 le~--~~i~vI~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~ 496 (849)
+++ ..+++|++|+... .+.+.+.+||..+.|++|+.++..+++...+. ..++.++++++..++..+.+.
T Consensus 143 le~~~~~~~~Il~~~~~~-----~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~----~~~~~~~~~a~~~l~~~~~G~ 213 (373)
T 1jr3_A 143 LEEPPEHVKFLLATTDPQ-----KLPVTILSRCLQFHLKALDVEQIRHQLEHILN----EEHIAHEPRALQLLARAAEGS 213 (373)
T ss_dssp HHSCCSSEEEEEEESCGG-----GSCHHHHTTSEEEECCCCCHHHHHHHHHHHHH----HHTCCBCHHHHHHHHHHSSSC
T ss_pred HhcCCCceEEEEEeCChH-----hCcHHHHhheeEeeCCCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHCCCC
Confidence 875 5688888887665 67889999999999999999999999988776 457889999999999888664
Q ss_pred cccCcchhhHHHHHHHHhh
Q 003088 497 ISDRYLPDKAIDLVDEAGS 515 (849)
Q Consensus 497 ~~~r~~p~~ai~ll~~a~~ 515 (849)
|..+..+++.+..
T Consensus 214 ------~r~~~~~l~~~~~ 226 (373)
T 1jr3_A 214 ------LRDALSLTDQAIA 226 (373)
T ss_dssp ------HHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHH
Confidence 4577777777643
No 66
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.66 E-value=1.1e-15 Score=162.59 Aligned_cols=207 Identities=21% Similarity=0.231 Sum_probs=138.3
Q ss_pred cCCCCccccHHHHHHHHHHHh-------------cCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEee
Q 003088 287 ELIDPVIGRETEIQRIIQILC-------------RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD 353 (849)
Q Consensus 287 ~~l~~iiG~~~~i~~l~~~l~-------------~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~ 353 (849)
.+++++.|.++.++.+.+.+. -..+.+++|+||||||||+++++||..+ +..++.++
T Consensus 7 ~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~----------~~~~i~i~ 76 (274)
T 2x8a_A 7 VTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANES----------GLNFISVK 76 (274)
T ss_dssp -----CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHT----------TCEEEEEE
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHc----------CCCEEEEE
Confidence 357788998888887766431 1223459999999999999999999987 44566776
Q ss_pred hhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcC----CCeEEEEc
Q 003088 354 MGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR----GELQCIAS 429 (849)
Q Consensus 354 ~~~~~~~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~----~~i~vI~a 429 (849)
...+. ..+.++.+..+..+++.+....++|+|+||++.+........ .+......+.+...|+. ..++++++
T Consensus 77 g~~l~--~~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~--~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~ 152 (274)
T 2x8a_A 77 GPELL--NMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRE--TGASVRVVNQLLTEMDGLEARQQVFIMAA 152 (274)
T ss_dssp TTTTC--SSTTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC-----------CTTHHHHHHHHHHTCCSTTCEEEEEE
T ss_pred cHHHH--hhhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCc--chHHHHHHHHHHHhhhcccccCCEEEEee
Confidence 65554 345688888999999998877889999999999865322110 01122344555555543 34778899
Q ss_pred cChHHHHHHhhccHHHHh--ccc-cEEecCCCHHHHHHHHHHHHHHHHhhcCCccC-HHHHHHHHHhhhcccccCcchhh
Q 003088 430 TTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFT-LEAINAAVHLSARYISDRYLPDK 505 (849)
Q Consensus 430 t~~~~~~~~~~~d~al~~--Rf~-~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~-~~~l~~~a~ls~~~~~~r~~p~~ 505 (849)
||.++ .+|+++.| ||+ .|+++.|+.++|.+||+.+.+.. ...... +-.+..++..+. .+.+.+.+
T Consensus 153 tn~p~-----~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~---~~~~~~~~~~~~~la~~~~---~~g~sgad 221 (274)
T 2x8a_A 153 TNRPD-----IIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNG---TKPPLDADVNLEAIAGDLR---CDCYTGAD 221 (274)
T ss_dssp ESCGG-----GSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTT---BTTBBCTTCCHHHHHTCSG---GGSCCHHH
T ss_pred cCChh-----hCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcc---cCCCCccccCHHHHHHhhc---cCCcCHHH
Confidence 99887 78999999 998 69999999999999998765421 112222 222444444321 23455678
Q ss_pred HHHHHHHHhhHHH
Q 003088 506 AIDLVDEAGSRAH 518 (849)
Q Consensus 506 ai~ll~~a~~~~~ 518 (849)
...++.+|+..+.
T Consensus 222 l~~l~~~a~~~a~ 234 (274)
T 2x8a_A 222 LSALVREASICAL 234 (274)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888876543
No 67
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.66 E-value=9.3e-16 Score=168.73 Aligned_cols=196 Identities=18% Similarity=0.239 Sum_probs=149.1
Q ss_pred hhhhHHHHhhcCCCCccccHHHHHHHHHHHhcCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhh
Q 003088 277 CVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGL 356 (849)
Q Consensus 277 ~~~l~~~~~~~~l~~iiG~~~~i~~l~~~l~~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~ 356 (849)
..+|.++|+|..|++++|++..++.+...+.....+|++|+||||||||++++++|+.+..... ...+..++...
T Consensus 12 ~~~~~~k~rp~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~-----~~~~~~~~~~~ 86 (340)
T 1sxj_C 12 NLPWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY-----SNMVLELNASD 86 (340)
T ss_dssp CCCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH-----HHHEEEECTTS
T ss_pred CCchHHHhCCCcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCc-----cceEEEEcCcc
Confidence 4589999999999999999999999999998887788999999999999999999999854211 12344444332
Q ss_pred hhccccccchHHHHHHHHHHHHHh------cCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcC--CCeEEEE
Q 003088 357 LMAGAKERGELEARVTTLISEIQK------SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--GELQCIA 428 (849)
Q Consensus 357 ~~~~~~~~g~~e~~l~~l~~~~~~------~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~--~~i~vI~ 428 (849)
. .+ ...++..+..+.. .+..|++|||+|.+ ..++++.|+.+++. ....+|+
T Consensus 87 ~------~~--~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l-------------~~~~~~~L~~~le~~~~~~~~il 145 (340)
T 1sxj_C 87 D------RG--IDVVRNQIKDFASTRQIFSKGFKLIILDEADAM-------------TNAAQNALRRVIERYTKNTRFCV 145 (340)
T ss_dssp C------CS--HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGS-------------CHHHHHHHHHHHHHTTTTEEEEE
T ss_pred c------cc--HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCC-------------CHHHHHHHHHHHhcCCCCeEEEE
Confidence 1 12 1223333433331 24689999999999 34567888888874 4577788
Q ss_pred ccChHHHHHHhhccHHHHhccccEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhcccccCcchhhHHH
Q 003088 429 STTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAID 508 (849)
Q Consensus 429 at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~~~r~~p~~ai~ 508 (849)
++|... .+.+++++||+.+.|.+++.++..+++..+++ ..++.++++++..++.++.+.. .+++.
T Consensus 146 ~~n~~~-----~i~~~i~sR~~~~~~~~l~~~~~~~~l~~~~~----~~~~~i~~~~~~~i~~~s~G~~------r~~~~ 210 (340)
T 1sxj_C 146 LANYAH-----KLTPALLSQCTRFRFQPLPQEAIERRIANVLV----HEKLKLSPNAEKALIELSNGDM------RRVLN 210 (340)
T ss_dssp EESCGG-----GSCHHHHTTSEEEECCCCCHHHHHHHHHHHHH----TTTCCBCHHHHHHHHHHHTTCH------HHHHH
T ss_pred EecCcc-----ccchhHHhhceeEeccCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHcCCCH------HHHHH
Confidence 888664 78899999999999999999999999887775 5678899999999999887643 35555
Q ss_pred HHHHH
Q 003088 509 LVDEA 513 (849)
Q Consensus 509 ll~~a 513 (849)
+++.+
T Consensus 211 ~l~~~ 215 (340)
T 1sxj_C 211 VLQSC 215 (340)
T ss_dssp HTTTT
T ss_pred HHHHH
Confidence 55443
No 68
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.66 E-value=3e-16 Score=175.29 Aligned_cols=156 Identities=25% Similarity=0.401 Sum_probs=117.9
Q ss_pred ccccccHHHHHHHHHHHHH--------hhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeecccccc
Q 003088 629 KRVIGQDEAVAAISRAVKR--------SRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYME 700 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~--------~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~ 700 (849)
+.|.|.+++++.|...+.. ...|...|. .+|||||||||||++|+++|..+ +.+|+.++++++..
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~pr----GiLL~GPPGtGKT~lakAiA~~~---~~~~~~v~~~~l~~ 244 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPR----GVLLYGPPGTGKTMLVKAVANST---KAAFIRVNGSEFVH 244 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCC----EEEEESCTTTTHHHHHHHHHHHH---TCEEEEEEGGGTCC
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCc----eEEEECCCCCCHHHHHHHHHHHh---CCCeEEEecchhhc
Confidence 5689999999998887743 234665443 49999999999999999999997 67899999988754
Q ss_pred ccccccccCCCCCccccccCc--chhHHHHhCCCeEEEEeCccccC--------------HHHHHHHHHHhhcCeeecCC
Q 003088 701 RHTVSKLIGSPPGYVGYEEGG--LLTEAIRRRPFTLLLLDEIEKAH--------------PDIFNILLQVFEDGHLTDSH 764 (849)
Q Consensus 701 ~~~~~~l~g~~~g~vg~~~~~--~l~~~i~~~~~~vl~lDEid~l~--------------~~~~~~Ll~~le~g~~~~~~ 764 (849)
.|+|..+.. .++...+...+|||||||+|.+. ..+.+.||..|+.-.
T Consensus 245 ------------~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~----- 307 (428)
T 4b4t_K 245 ------------KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFD----- 307 (428)
T ss_dssp ------------SSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSC-----
T ss_pred ------------cccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCC-----
Confidence 366665522 23444455667999999999762 236888999988621
Q ss_pred CceeecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhh--ccccEEEcC-CCCHH
Q 003088 765 GRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLN--RIDEVVVFR-SLEKA 841 (849)
Q Consensus 765 g~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~--R~d~~i~f~-pl~~~ 841 (849)
...+++||+|||.... ++|+|+. |||..|.|+ +++.+
T Consensus 308 ----~~~~v~vI~aTN~~~~------------------------------------LD~AllRpGRfd~~I~~p~lPd~~ 347 (428)
T 4b4t_K 308 ----QSTNVKVIMATNRADT------------------------------------LDPALLRPGRLDRKIEFPSLRDRR 347 (428)
T ss_dssp ----SSCSEEEEEEESCSSS------------------------------------CCHHHHSSSSEEEEEECCSSCCHH
T ss_pred ----CCCCEEEEEecCChhh------------------------------------cChhhhcCCcceEEEEcCCCCCHH
Confidence 2347899999997421 8899996 999999997 67888
Q ss_pred HHccccC
Q 003088 842 QVCQLPL 848 (849)
Q Consensus 842 ~~~~I~~ 848 (849)
+...|++
T Consensus 348 ~R~~Il~ 354 (428)
T 4b4t_K 348 ERRLIFG 354 (428)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8777764
No 69
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.65 E-value=2.5e-16 Score=170.76 Aligned_cols=174 Identities=20% Similarity=0.309 Sum_probs=127.9
Q ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHh-------hcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCC----C
Q 003088 619 LLVGLEEQLKKRVIGQDEAVAAISRAVKRS-------RVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGS----E 687 (849)
Q Consensus 619 ~~~~l~~~l~~~i~Gq~~~i~~l~~~l~~~-------~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~----~ 687 (849)
.+..+...+...++|++++++.+...+... +.|+.. .++..++||+||||||||++|+++++.+... .
T Consensus 21 ~~~~~~~~l~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~-~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~ 99 (309)
T 3syl_A 21 GAKEVLEELDRELIGLKPVKDRIRETAALLLVERARQKLGLAH-ETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRK 99 (309)
T ss_dssp THHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCS-SCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSS
T ss_pred cHHHHHHHHHHHccChHHHHHHHHHHHHHHHhHHHHHHcCCCC-CCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCC
Confidence 345566677778999999999998776532 244443 2344569999999999999999999987432 3
Q ss_pred CceeEeeccccccccccccccCCCCCccccccCcchhHHHHhCCCeEEEEeCcccc---------CHHHHHHHHHHhhcC
Q 003088 688 SSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRRRPFTLLLLDEIEKA---------HPDIFNILLQVFEDG 758 (849)
Q Consensus 688 ~~~i~i~~~~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~i~~~~~~vl~lDEid~l---------~~~~~~~Ll~~le~g 758 (849)
.+++.++++.+.. . ++|... ..+.+.+..+.++||||||+|.+ ++.+++.|++.|+++
T Consensus 100 ~~~~~~~~~~l~~-----~-------~~g~~~-~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~ 166 (309)
T 3syl_A 100 GHLVSVTRDDLVG-----Q-------YIGHTA-PKTKEVLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENN 166 (309)
T ss_dssp CCEEEECGGGTCC-----S-------STTCHH-HHHHHHHHHHTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHC
T ss_pred CcEEEEcHHHhhh-----h-------cccccH-HHHHHHHHhcCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcC
Confidence 4788888776532 1 333322 23455666667899999999977 889999999999973
Q ss_pred eeecCCCceeecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCC
Q 003088 759 HLTDSHGRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSL 838 (849)
Q Consensus 759 ~~~~~~g~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl 838 (849)
..+++||+++|...... .-.++|.|.+||+.++.|+|+
T Consensus 167 -----------~~~~~~i~~~~~~~~~~-------------------------------~~~~~~~l~~R~~~~i~~~~~ 204 (309)
T 3syl_A 167 -----------RDDLVVILAGYADRMEN-------------------------------FFQSNPGFRSRIAHHIEFPDY 204 (309)
T ss_dssp -----------TTTCEEEEEECHHHHHH-------------------------------HHHHSTTHHHHEEEEEEECCC
T ss_pred -----------CCCEEEEEeCChHHHHH-------------------------------HHhhCHHHHHhCCeEEEcCCc
Confidence 24788999998631100 001469999999999999999
Q ss_pred CHHHHccccC
Q 003088 839 EKAQVCQLPL 848 (849)
Q Consensus 839 ~~~~~~~I~~ 848 (849)
+.+++..|++
T Consensus 205 ~~~~~~~il~ 214 (309)
T 3syl_A 205 SDEELFEIAG 214 (309)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 9999988863
No 70
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.65 E-value=1.3e-15 Score=164.78 Aligned_cols=215 Identities=21% Similarity=0.282 Sum_probs=141.7
Q ss_pred CCccccHHHHHHHHHHHhc--------------CCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehh
Q 003088 290 DPVIGRETEIQRIIQILCR--------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMG 355 (849)
Q Consensus 290 ~~iiG~~~~i~~l~~~l~~--------------~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~ 355 (849)
+.++|+++.++.+...+.. ....++||+||||||||++|+++++.+ +.+++.+++.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l----------~~~~~~i~~~ 84 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA----------NAPFIKVEAT 84 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH----------TCCEEEEEGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEcch
Confidence 3589999999998887754 346789999999999999999999988 5667788877
Q ss_pred hhhccccccc-hHHHHHHHHHHHH----Hh-cCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCC-------
Q 003088 356 LLMAGAKERG-ELEARVTTLISEI----QK-SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG------- 422 (849)
Q Consensus 356 ~~~~~~~~~g-~~e~~l~~l~~~~----~~-~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~------- 422 (849)
.+... .+.| +....++.++... .. ..++||||||+|.+.+..... +.......+++.|+.+++..
T Consensus 85 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~-~~~~~~~~~~~~Ll~~le~~~~~~~~~ 162 (310)
T 1ofh_A 85 KFTEV-GYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYS-GADVSREGVQRDLLPLVEGSTVSTKHG 162 (310)
T ss_dssp GGSSC-CSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCC-SSHHHHHHHHHHHHHHHHCCEEEETTE
T ss_pred hcccC-CccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCcccccc-ccchhHHHHHHHHHHHhcCCeEecccc
Confidence 66431 1222 1223344444421 11 225699999999996543210 00001112467788888754
Q ss_pred -----CeEEEEccChHHHHHHhhccHHHHhccc-cEEecCCCHHHHHHHHH----HHHHHHHh---hcC--CccCHHHHH
Q 003088 423 -----ELQCIASTTQDEHRTQFEKDKALARRFQ-PVLISEPSQEDAVRILL----GLREKYEA---HHN--CKFTLEAIN 487 (849)
Q Consensus 423 -----~i~vI~at~~~~~~~~~~~d~al~~Rf~-~i~~~~ps~~e~~~iL~----~~~~~~~~---~~~--~~i~~~~l~ 487 (849)
.+++|++++.... ....++++|.+||. .|.|++|+.+++.+|++ .+..++.. ..+ +.+++++++
T Consensus 163 ~~~~~~~~~i~~~~~~~~-~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 241 (310)
T 1ofh_A 163 MVKTDHILFIASGAFQVA-RPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVK 241 (310)
T ss_dssp EEECTTCEEEEEECCSSS-CGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHH
T ss_pred cccCCcEEEEEcCCcccC-CcccCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHH
Confidence 6788888632100 11278899999997 59999999999999998 34333321 123 579999999
Q ss_pred HHHHhhhccc--ccCcchhhHHHHHHHHhhHH
Q 003088 488 AAVHLSARYI--SDRYLPDKAIDLVDEAGSRA 517 (849)
Q Consensus 488 ~~a~ls~~~~--~~r~~p~~ai~ll~~a~~~~ 517 (849)
.++..+...- ....-+..+..+++.++...
T Consensus 242 ~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~ 273 (310)
T 1ofh_A 242 KIAEAAFRVNEKTENIGARRLHTVMERLMDKI 273 (310)
T ss_dssp HHHHHHHHHHHHSCCCTTHHHHHHHHHHSHHH
T ss_pred HHHHHhhhhcccccccCcHHHHHHHHHHHHhh
Confidence 9988774310 01223456777777776544
No 71
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.64 E-value=1.4e-16 Score=184.94 Aligned_cols=202 Identities=15% Similarity=0.184 Sum_probs=139.9
Q ss_pred hhhhhhHHHHhhcCCCCccccHHHHHHHHHHHhcC-----------------CCCCCeEeCCCCChHHHHHHHHHHHhhh
Q 003088 275 QFCVDLTARASEELIDPVIGRETEIQRIIQILCRR-----------------TKNNPILLGESGVGKTAIAEGLAIRIVQ 337 (849)
Q Consensus 275 ~~~~~l~~~~~~~~l~~iiG~~~~i~~l~~~l~~~-----------------~~~niLL~GppGtGKT~la~~la~~l~~ 337 (849)
.-...|+++|+|..+++++|+++.++.+.+++... ..+++||+||||||||++|+++|+.+
T Consensus 24 ~~~~lW~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l-- 101 (516)
T 1sxj_A 24 ASDKLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL-- 101 (516)
T ss_dssp --CCCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT--
T ss_pred ccCCCcccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc--
Confidence 34467999999999999999999999999988541 34689999999999999999999998
Q ss_pred CCCCccccCCeEEEeehhhhhccccccchHHHHH---------HHHHHHH-----HhcCCeEEEEcCcchhhhCCCCCCC
Q 003088 338 AEVPVFLLSKRIMSLDMGLLMAGAKERGELEARV---------TTLISEI-----QKSGDVILFIDEVHTLIGSGTVGRG 403 (849)
Q Consensus 338 ~~~p~~~~~~~~~~l~~~~~~~~~~~~g~~e~~l---------~~l~~~~-----~~~~~~ILfIDEi~~l~~~~~~~~~ 403 (849)
++.++.++++...... .++..+ ..++..+ ....+.||||||+|.+...
T Consensus 102 --------~~~~i~in~s~~~~~~----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~------ 163 (516)
T 1sxj_A 102 --------GYDILEQNASDVRSKT----LLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGG------ 163 (516)
T ss_dssp --------TCEEEEECTTSCCCHH----HHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTT------
T ss_pred --------CCCEEEEeCCCcchHH----HHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchh------
Confidence 5677777765432110 000001 1111111 1245789999999999532
Q ss_pred CCCccHHHHHHHhhhhcCCCeEEEEccChHHHHHHhhccHHHHhccccEEecCCCHHHHHHHHHHHHHHHHhhcCCccCH
Q 003088 404 NKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTL 483 (849)
Q Consensus 404 ~~~~~~~~~~~L~~~le~~~i~vI~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~ 483 (849)
.....+.|..+++..+..+|++++.... ..-+.+.+|+..+.|++|+.+++.++|..++. ..++.+++
T Consensus 164 ----~~~~l~~L~~~l~~~~~~iIli~~~~~~----~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~----~~~~~i~~ 231 (516)
T 1sxj_A 164 ----DRGGVGQLAQFCRKTSTPLILICNERNL----PKMRPFDRVCLDIQFRRPDANSIKSRLMTIAI----REKFKLDP 231 (516)
T ss_dssp ----STTHHHHHHHHHHHCSSCEEEEESCTTS----STTGGGTTTSEEEECCCCCHHHHHHHHHHHHH----HHTCCCCT
T ss_pred ----hHHHHHHHHHHHHhcCCCEEEEEcCCCC----ccchhhHhceEEEEeCCCCHHHHHHHHHHHHH----HcCCCCCH
Confidence 2234566777776655444444443210 11245778888999999999999999988776 45778999
Q ss_pred HHHHHHHHhhhcccccCcchhhHHHHHHHHh
Q 003088 484 EAINAAVHLSARYISDRYLPDKAIDLVDEAG 514 (849)
Q Consensus 484 ~~l~~~a~ls~~~~~~r~~p~~ai~ll~~a~ 514 (849)
+++..++..+.+.+ ..++.+++.++
T Consensus 232 ~~l~~la~~s~Gdi------R~~i~~L~~~~ 256 (516)
T 1sxj_A 232 NVIDRLIQTTRGDI------RQVINLLSTIS 256 (516)
T ss_dssp THHHHHHHHTTTCH------HHHHHHHTHHH
T ss_pred HHHHHHHHHcCCcH------HHHHHHHHHHH
Confidence 99999998886643 35666665543
No 72
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.64 E-value=5.2e-16 Score=166.95 Aligned_cols=161 Identities=16% Similarity=0.171 Sum_probs=109.0
Q ss_pred CCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhccccccchHHHHHHHHHHHH----HhcCCeE
Q 003088 310 TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI----QKSGDVI 385 (849)
Q Consensus 310 ~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~~~~~~g~~e~~l~~l~~~~----~~~~~~I 385 (849)
.+.++||+||||||||++|+++|+.+ +.+++.++++.+.. .+.|+.+..++.+++.+ +...++|
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l----------~~~~i~v~~~~l~~--~~~g~~~~~i~~~f~~a~~~~~~~~~~v 102 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM----------GINPIMMSAGELES--GNAGEPAKLIRQRYREAAEIIRKGNMCC 102 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH----------TCCCEEEEHHHHHC--C---HHHHHHHHHHHHHHHHHTTSSCCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEeHHHhhh--ccCchhHHHHHHHHHHHHHHHhcCCCeE
Confidence 34578999999999999999999999 77888999888873 46788899999999888 4567899
Q ss_pred EEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhc---------------CCCeEEEEccChHHHHHHhhccHHHHh--c
Q 003088 386 LFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG---------------RGELQCIASTTQDEHRTQFEKDKALAR--R 448 (849)
Q Consensus 386 LfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le---------------~~~i~vI~at~~~~~~~~~~~d~al~~--R 448 (849)
|||||+|.+.+..............+++.|...++ ..++.+|+|||..+ .++++|+| |
T Consensus 103 l~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~-----~ld~al~R~~R 177 (293)
T 3t15_A 103 LFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFS-----TLYAPLIRDGR 177 (293)
T ss_dssp EEEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCC-----C--CHHHHHHH
T ss_pred EEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcc-----cCCHHHhCCCC
Confidence 99999999976332111111123456677777764 34689999999876 78899987 8
Q ss_pred cccEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhccc
Q 003088 449 FQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497 (849)
Q Consensus 449 f~~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~ 497 (849)
|+.+.. .|+.+++.+|++.+.. ..+ ++. ..++.++.+|.
T Consensus 178 ~d~~i~-~P~~~~r~~Il~~~~~----~~~--~~~---~~l~~~~~~~~ 216 (293)
T 3t15_A 178 MEKFYW-APTREDRIGVCTGIFR----TDN--VPA---EDVVKIVDNFP 216 (293)
T ss_dssp EEEEEE-CCCHHHHHHHHHHHHG----GGC--CCH---HHHHHHHHHSC
T ss_pred CceeEe-CcCHHHHHHHHHHhcc----CCC--CCH---HHHHHHhCCCC
Confidence 875332 5799999999986554 333 333 34455566654
No 73
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.63 E-value=1.1e-17 Score=177.61 Aligned_cols=205 Identities=22% Similarity=0.290 Sum_probs=129.4
Q ss_pred hcCCCCccccHHHHHHHHHHHhc------------CCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEee
Q 003088 286 EELIDPVIGRETEIQRIIQILCR------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD 353 (849)
Q Consensus 286 ~~~l~~iiG~~~~i~~l~~~l~~------------~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~ 353 (849)
+..+++++|+++.++.+.+++.. ....++||+||||||||++|+++|.++ +.+++.++
T Consensus 7 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~----------~~~~~~v~ 76 (268)
T 2r62_A 7 NVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA----------HVPFFSMG 76 (268)
T ss_dssp CCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHH----------TCCCCCCC
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHh----------CCCEEEec
Confidence 44688999999888887776531 335679999999999999999999987 23344444
Q ss_pred hhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCC--CCCCccHHHHHHHhhhhc-----CCCeEE
Q 003088 354 MGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGR--GNKGTGLDISNLLKPSLG-----RGELQC 426 (849)
Q Consensus 354 ~~~~~~~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~--~~~~~~~~~~~~L~~~le-----~~~i~v 426 (849)
+..+.. .+.|..+..++.+++.+....++||||||+|.+.+....+. +........++.|...++ ...+++
T Consensus 77 ~~~~~~--~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~v 154 (268)
T 2r62_A 77 GSSFIE--MFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIV 154 (268)
T ss_dssp SCTTTT--SCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEE
T ss_pred hHHHHH--hhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEE
Confidence 444332 12222233355677777777788999999999975431100 000011122334444443 234899
Q ss_pred EEccChHHHHHHhhccHHHHh--ccc-cEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhcccccCcch
Q 003088 427 IASTTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLP 503 (849)
Q Consensus 427 I~at~~~~~~~~~~~d~al~~--Rf~-~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~~~r~~p 503 (849)
|++||..+ .+++++.+ ||. .+.|+.|+.++|.++|+.++..+ .+. ++..+..++..+.+ +.+
T Consensus 155 i~ttn~~~-----~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~----~~~-~~~~~~~la~~~~g-----~~g 219 (268)
T 2r62_A 155 LAATNRPE-----ILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGV----KLA-NDVNLQEVAKLTAG-----LAG 219 (268)
T ss_dssp EECBSCCT-----TSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSS----CCC-SSCCTTTTTSSSCS-----SCH
T ss_pred EEecCCch-----hcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcC----CCC-CccCHHHHHHHcCC-----CCH
Confidence 99999886 68899988 896 69999999999999997665422 111 11123334443333 233
Q ss_pred hhHHHHHHHHhhHH
Q 003088 504 DKAIDLVDEAGSRA 517 (849)
Q Consensus 504 ~~ai~ll~~a~~~~ 517 (849)
.+...+++.|+..+
T Consensus 220 ~dl~~l~~~a~~~a 233 (268)
T 2r62_A 220 ADLANIINEAALLA 233 (268)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHH
Confidence 56667777776543
No 74
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.63 E-value=1.1e-15 Score=171.24 Aligned_cols=78 Identities=29% Similarity=0.552 Sum_probs=59.2
Q ss_pred HHHHHHHHhccccccHHHHHHHHHHHHHh--hcCCCC---CCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEee
Q 003088 620 LVGLEEQLKKRVIGQDEAVAAISRAVKRS--RVGLKD---PNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLD 694 (849)
Q Consensus 620 ~~~l~~~l~~~i~Gq~~~i~~l~~~l~~~--~~g~~~---~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~ 694 (849)
+..+...|.+.|+||+++++.+..++... +.+... ...+..++||+||||||||++|+++|+.+ +.+|+.++
T Consensus 6 P~~i~~~Ld~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l---~~~~~~v~ 82 (444)
T 1g41_A 6 PREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA---NAPFIKVE 82 (444)
T ss_dssp HHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHT---TCCEEEEE
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHc---CCCceeec
Confidence 45677888899999999999998888542 111111 11234569999999999999999999997 66899999
Q ss_pred cccccc
Q 003088 695 MSEYME 700 (849)
Q Consensus 695 ~~~~~~ 700 (849)
++.+..
T Consensus 83 ~~~~~~ 88 (444)
T 1g41_A 83 ATKFTE 88 (444)
T ss_dssp GGGGC-
T ss_pred chhhcc
Confidence 876654
No 75
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.63 E-value=2.4e-15 Score=164.74 Aligned_cols=186 Identities=16% Similarity=0.251 Sum_probs=131.3
Q ss_pred hhhhhhHHHHhhcCCCCccccHHHHHHHHHHHhcCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeeh
Q 003088 275 QFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM 354 (849)
Q Consensus 275 ~~~~~l~~~~~~~~l~~iiG~~~~i~~l~~~l~~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~ 354 (849)
.|..+|.+++++..+++++|+++.++.+...+.. ..|+||+||||||||++|+++++.+ +..++.+++
T Consensus 12 ~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~l~~--~~~vll~G~pGtGKT~la~~la~~~----------~~~~~~i~~ 79 (331)
T 2r44_A 12 LYYRNKIKEVIDEVGKVVVGQKYMINRLLIGICT--GGHILLEGVPGLAKTLSVNTLAKTM----------DLDFHRIQF 79 (331)
T ss_dssp HHHHHHHHHHHHHHTTTCCSCHHHHHHHHHHHHH--TCCEEEESCCCHHHHHHHHHHHHHT----------TCCEEEEEC
T ss_pred HHHHHHHHHHHHHhccceeCcHHHHHHHHHHHHc--CCeEEEECCCCCcHHHHHHHHHHHh----------CCCeEEEec
Confidence 3567899999999999999999999998887765 4699999999999999999999987 333444433
Q ss_pred h------hhhcccc---ccchHHHHHHHHHHHHHhcC---CeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCC
Q 003088 355 G------LLMAGAK---ERGELEARVTTLISEIQKSG---DVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG 422 (849)
Q Consensus 355 ~------~~~~~~~---~~g~~e~~l~~l~~~~~~~~---~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~ 422 (849)
. .+..... ..|.+. . ..+ +.||||||++.+ ..+.++.|...++.+
T Consensus 80 ~~~~~~~~l~g~~~~~~~~~~~~---------~-~~g~l~~~vl~iDEi~~~-------------~~~~~~~Ll~~l~~~ 136 (331)
T 2r44_A 80 TPDLLPSDLIGTMIYNQHKGNFE---------V-KKGPVFSNFILADEVNRS-------------PAKVQSALLECMQEK 136 (331)
T ss_dssp CTTCCHHHHHEEEEEETTTTEEE---------E-EECTTCSSEEEEETGGGS-------------CHHHHHHHHHHHHHS
T ss_pred CCCCChhhcCCceeecCCCCceE---------e-ccCcccccEEEEEccccC-------------CHHHHHHHHHHHhcC
Confidence 1 1111000 001000 0 011 269999999998 345677777777643
Q ss_pred -------------CeEEEEccChHHHHHHhhccHHHHhccc-cEEecCCCHHHHHHHHHHHHHHH---------------
Q 003088 423 -------------ELQCIASTTQDEHRTQFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKY--------------- 473 (849)
Q Consensus 423 -------------~i~vI~at~~~~~~~~~~~d~al~~Rf~-~i~~~~ps~~e~~~iL~~~~~~~--------------- 473 (849)
.+++|+|+|+.++...+.++++|.+||. .+.++.|+.+++.+||+......
T Consensus 137 ~~~~~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~ 216 (331)
T 2r44_A 137 QVTIGDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVL 216 (331)
T ss_dssp EEEETTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHH
T ss_pred ceeeCCEEEECCCCEEEEEecCCCcccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHH
Confidence 4688888887654443458999999998 59999999999999998764321
Q ss_pred ---HhhcCCccCHHHHHHHHHhhhc
Q 003088 474 ---EAHHNCKFTLEAINAAVHLSAR 495 (849)
Q Consensus 474 ---~~~~~~~i~~~~l~~~a~ls~~ 495 (849)
....++.++++++..++.++..
T Consensus 217 ~~~~~~~~v~~~~~~~~~i~~~~~~ 241 (331)
T 2r44_A 217 EIRNEINKVTISESLEKYIIELVFA 241 (331)
T ss_dssp HHHHHHHTCBCCHHHHHHHHHHHHH
T ss_pred HHHHHhccCCCCHHHHHHHHHHHHH
Confidence 0113567777777777766543
No 76
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.62 E-value=5.6e-16 Score=180.55 Aligned_cols=207 Identities=21% Similarity=0.310 Sum_probs=134.4
Q ss_pred HhHHHHHHHhHhCCCcccCCHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchH
Q 003088 594 PDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673 (849)
Q Consensus 594 ~~~i~~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt 673 (849)
...+...++.+.++|+...+.+. ..+....+.|.+.++|++++++.+...+......... +..+++|+||||||||
T Consensus 47 ~~~~~~~l~~~~~lp~~~~~~~~-~~~~~~~~~l~~di~G~~~vk~~i~~~~~l~~~~~~~---~g~~vll~Gp~GtGKT 122 (543)
T 3m6a_A 47 SSVIRNYIDWLVALPWTDETDDK-LDLKEAGRLLDEEHHGLEKVKERILEYLAVQKLTKSL---KGPILCLAGPPGVGKT 122 (543)
T ss_dssp TTHHHHHHHHHHHSCSSCCCCCC-CCTTTGGGTHHHHCSSCHHHHHHHHHHHHHHHHSSSC---CSCEEEEESSSSSSHH
T ss_pred HhHHHHHHHHHhcCCCCcccccc-ccHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccC---CCCEEEEECCCCCCHH
Confidence 34466677777777765543321 2233445567788999999999998776654443332 2346999999999999
Q ss_pred HHHHHHHHHhcCCCCceeEeeccccccccccccccCCCCCccccccCcchhHHHHhC--CCeEEEEeCccccCHH----H
Q 003088 674 ELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRRR--PFTLLLLDEIEKAHPD----I 747 (849)
Q Consensus 674 ~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~i~~~--~~~vl~lDEid~l~~~----~ 747 (849)
++|++||..+ +.+++.++|..+.. .+.++|....|+|+..+. +...+..+ .++||||||||+++++ .
T Consensus 123 tlar~ia~~l---~~~~~~i~~~~~~~---~~~~~g~~~~~ig~~~~~-~~~~~~~a~~~~~vl~lDEid~l~~~~~~~~ 195 (543)
T 3m6a_A 123 SLAKSIAKSL---GRKFVRISLGGVRD---ESEIRGHRRTYVGAMPGR-IIQGMKKAGKLNPVFLLDEIDKMSSDFRGDP 195 (543)
T ss_dssp HHHHHHHHHH---TCEEEEECCCC-----------------------C-HHHHHHTTCSSSEEEEEEESSSCC-------
T ss_pred HHHHHHHHhc---CCCeEEEEecccch---hhhhhhHHHHHhccCchH-HHHHHHHhhccCCEEEEhhhhhhhhhhccCH
Confidence 9999999997 56789999887654 345566656677765533 33344443 4579999999999988 5
Q ss_pred HHHHHHHhhcCe---eecC-CCceeecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCCh
Q 003088 748 FNILLQVFEDGH---LTDS-HGRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRP 823 (849)
Q Consensus 748 ~~~Ll~~le~g~---~~~~-~g~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~p 823 (849)
++.|++.|+.+. +.+. .+..+++.+++||+|+|... .|+|
T Consensus 196 ~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~------------------------------------~l~~ 239 (543)
T 3m6a_A 196 SSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLA------------------------------------TIPG 239 (543)
T ss_dssp --CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTT------------------------------------TSCH
T ss_pred HHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccc------------------------------------cCCH
Confidence 699999998754 3333 24556678999999999742 1889
Q ss_pred HHhhccccEEEcCCCCHHHHccccC
Q 003088 824 ELLNRIDEVVVFRSLEKAQVCQLPL 848 (849)
Q Consensus 824 ell~R~d~~i~f~pl~~~~~~~I~~ 848 (849)
+|++|| .+|.|++++.++..+|++
T Consensus 240 aL~~R~-~vi~~~~~~~~e~~~Il~ 263 (543)
T 3m6a_A 240 PLRDRM-EIINIAGYTEIEKLEIVK 263 (543)
T ss_dssp HHHHHE-EEEECCCCCHHHHHHHHH
T ss_pred HHHhhc-ceeeeCCCCHHHHHHHHH
Confidence 999999 578999999998887753
No 77
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.62 E-value=2.9e-15 Score=161.26 Aligned_cols=223 Identities=9% Similarity=0.061 Sum_probs=147.1
Q ss_pred hHHHHhhcCCCCccccHHHHHHHHHHH----hcCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehh
Q 003088 280 LTARASEELIDPVIGRETEIQRIIQIL----CRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMG 355 (849)
Q Consensus 280 l~~~~~~~~l~~iiG~~~~i~~l~~~l----~~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~ 355 (849)
+.+.+++.+ -+.||++++..+...+ .....++++|+||||||||++++.+++++........+....++.+++.
T Consensus 12 l~~~~~~~~--~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~ 89 (318)
T 3te6_A 12 IRESLQKRE--LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDAL 89 (318)
T ss_dssp HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETT
T ss_pred hhhccCCcc--ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEecc
Confidence 334444432 2789999999988766 4467789999999999999999999999964321111113456666643
Q ss_pred hhh-------------ccc-cccchHHHHHHHHHHHH--HhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhh-
Q 003088 356 LLM-------------AGA-KERGELEARVTTLISEI--QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPS- 418 (849)
Q Consensus 356 ~~~-------------~~~-~~~g~~e~~l~~l~~~~--~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~- 418 (849)
.+. .+. ...+.....+..+|..+ ....+.|+||||+|.|. ..++...|..+
T Consensus 90 ~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~------------~q~~L~~l~~~~ 157 (318)
T 3te6_A 90 ELAGMDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL------------SEKILQYFEKWI 157 (318)
T ss_dssp CCC--HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC------------CTHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh------------cchHHHHHHhcc
Confidence 321 111 11234455677777765 23557899999999994 12222222222
Q ss_pred -hcCCCeEEEEccChHHHHHHhhccHHHHhccc--cEEecCCCHHHHHHHHHHHHHHHHhh-------------------
Q 003088 419 -LGRGELQCIASTTQDEHRTQFEKDKALARRFQ--PVLISEPSQEDAVRILLGLREKYEAH------------------- 476 (849)
Q Consensus 419 -le~~~i~vI~at~~~~~~~~~~~d~al~~Rf~--~i~~~~ps~~e~~~iL~~~~~~~~~~------------------- 476 (849)
.+.+++.+|+++|..+... ..+++++++||. .|.|++++.+|..+||+..++.....
T Consensus 158 ~~~~s~~~vI~i~n~~d~~~-~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~ 236 (318)
T 3te6_A 158 SSKNSKLSIICVGGHNVTIR-EQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIRE 236 (318)
T ss_dssp HCSSCCEEEEEECCSSCCCH-HHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--
T ss_pred cccCCcEEEEEEecCcccch-hhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhhhccccccccccccccccccccc
Confidence 2466788998887654211 346778889995 69999999999999999988765321
Q ss_pred ------------cCCccCHHHHHHHHHhhhcccccCcchhhHHHHHHHHhhHHHHh
Q 003088 477 ------------HNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIE 520 (849)
Q Consensus 477 ------------~~~~i~~~~l~~~a~ls~~~~~~r~~p~~ai~ll~~a~~~~~~~ 520 (849)
..+.+++++++.+++.+...-.+ -.+|++++..|+..+..+
T Consensus 237 ~~~~~~~~~~~~~~~~i~~~ai~~~A~~vA~~~GD---~R~Al~ilr~A~~~ae~e 289 (318)
T 3te6_A 237 GQNQKIPDNVIVINHKINNKITQLIAKNVANVSGS---TEKAFKICEAAVEISKKD 289 (318)
T ss_dssp ------CTTEEEECEECCHHHHHHHHHHHHHHHCS---HHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccCHHHHHHHHHHHHhhCCh---HHHHHHHHHHHHHHHHHH
Confidence 01257999999999854432221 248999999998776543
No 78
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.62 E-value=2.7e-16 Score=150.51 Aligned_cols=138 Identities=13% Similarity=0.166 Sum_probs=105.0
Q ss_pred cccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccccccC
Q 003088 630 RVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIG 709 (849)
Q Consensus 630 ~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g 709 (849)
.++|++++++.+...+...... ..++||+||||||||++|+++|+.. . +|+.++|+.+....
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~-------~~~vll~G~~GtGKt~lA~~i~~~~---~-~~~~~~~~~~~~~~------- 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKR-------TSPVFLTGEAGSPFETVARYFHKNG---T-PWVSPARVEYLIDM------- 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTC-------SSCEEEEEETTCCHHHHHGGGCCTT---S-CEECCSSTTHHHHC-------
T ss_pred CceeCCHHHHHHHHHHHHHhCC-------CCcEEEECCCCccHHHHHHHHHHhC---C-CeEEechhhCChHh-------
Confidence 5799999999999988765321 1249999999999999999999875 2 89999998765421
Q ss_pred CCCCccccccCcchhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCchhhhcc
Q 003088 710 SPPGYVGYEEGGLLTEAIRRRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKG 789 (849)
Q Consensus 710 ~~~g~vg~~~~~~l~~~i~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~~~ 789 (849)
..+.+..+.+++|||||+|.++++.|+.|+++|+++. ..++++|+|||.++..+ .
T Consensus 67 -------------~~~~~~~a~~~~l~lDei~~l~~~~q~~Ll~~l~~~~----------~~~~~iI~~tn~~~~~~-~- 121 (143)
T 3co5_A 67 -------------PMELLQKAEGGVLYVGDIAQYSRNIQTGITFIIGKAE----------RCRVRVIASCSYAAGSD-G- 121 (143)
T ss_dssp -------------HHHHHHHTTTSEEEEEECTTCCHHHHHHHHHHHHHHT----------TTTCEEEEEEEECTTTC---
T ss_pred -------------hhhHHHhCCCCeEEEeChHHCCHHHHHHHHHHHHhCC----------CCCEEEEEecCCCHHHH-H-
Confidence 2344556677899999999999999999999999742 24789999999865432 1
Q ss_pred cCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccc-cEEEcCCCC
Q 003088 790 RHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRID-EVVVFRSLE 839 (849)
Q Consensus 790 ~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d-~~i~f~pl~ 839 (849)
.. |+++|++||. ..|..|||.
T Consensus 122 ----------------------------~~-~~~~L~~rl~~~~i~lPpLr 143 (143)
T 3co5_A 122 ----------------------------IS-CEEKLAGLFSESVVRIPPLS 143 (143)
T ss_dssp -----------------------------C-HHHHHHHHSSSEEEEECCCC
T ss_pred ----------------------------hC-ccHHHHHHhcCcEEeCCCCC
Confidence 12 6789999986 467888874
No 79
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.62 E-value=3.6e-15 Score=163.81 Aligned_cols=157 Identities=18% Similarity=0.266 Sum_probs=120.1
Q ss_pred ccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeecccccccccccccc
Q 003088 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLI 708 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~ 708 (849)
+.++|++.+++.+...+...... ..+..++||+||||||||++|+++++.+ +.+|+.++|+.+...
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~~----~~~~~~vll~G~~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~------- 94 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKKR----NECLDHILFSGPAGLGKTTLANIISYEM---SANIKTTAAPMIEKS------- 94 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHT----TSCCCCEEEECSTTSSHHHHHHHHHHHT---TCCEEEEEGGGCCSH-------
T ss_pred HHhCChHHHHHHHHHHHHHHHhc----CCCCCeEEEECcCCCCHHHHHHHHHHHh---CCCeEEecchhccch-------
Confidence 67999999999999988875432 1223459999999999999999999986 567899888765321
Q ss_pred CCCCCccccccCcchhHHHHh-CCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCC-------CceeecCCeEEEEecC
Q 003088 709 GSPPGYVGYEEGGLLTEAIRR-RPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSH-------GRRVSFKNALIVMTSN 780 (849)
Q Consensus 709 g~~~g~vg~~~~~~l~~~i~~-~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~-------g~~~~~~~~~iI~tsn 780 (849)
+.+...+.. +.+++||||||+.+++..++.|++.|+++.+.... ...++.++++||++||
T Consensus 95 ------------~~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn 162 (338)
T 3pfi_A 95 ------------GDLAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATT 162 (338)
T ss_dssp ------------HHHHHHHHTCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEES
T ss_pred ------------hHHHHHHHhccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCC
Confidence 223344433 56789999999999999999999999998754322 1223344689999999
Q ss_pred CCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHHHcccc
Q 003088 781 VGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQLP 847 (849)
Q Consensus 781 ~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~I~ 847 (849)
... .++++|++||+.++.|+|++.+++.+|+
T Consensus 163 ~~~------------------------------------~l~~~L~~R~~~~i~l~~~~~~e~~~il 193 (338)
T 3pfi_A 163 RAG------------------------------------MLSNPLRDRFGMQFRLEFYKDSELALIL 193 (338)
T ss_dssp CGG------------------------------------GSCHHHHTTCSEEEECCCCCHHHHHHHH
T ss_pred Ccc------------------------------------ccCHHHHhhcCEEeeCCCcCHHHHHHHH
Confidence 621 1789999999999999999999988775
No 80
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.62 E-value=5.6e-14 Score=154.00 Aligned_cols=192 Identities=19% Similarity=0.245 Sum_probs=134.1
Q ss_pred hhHHHHhhcCCCCccccHHHHHHHHHHHhcC-----CCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEee
Q 003088 279 DLTARASEELIDPVIGRETEIQRIIQILCRR-----TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD 353 (849)
Q Consensus 279 ~l~~~~~~~~l~~iiG~~~~i~~l~~~l~~~-----~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~ 353 (849)
.|.+++++..+++++|++..++.+...+... ...+++|+||||+||||+++++|..+ ++.+....
T Consensus 14 ~~~~~lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l----------~~~~~~~s 83 (334)
T 1in4_A 14 SGVQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL----------QTNIHVTS 83 (334)
T ss_dssp ---CTTSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH----------TCCEEEEE
T ss_pred HHHHHcCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh----------CCCEEEEe
Confidence 4578889999999999998888877666432 34789999999999999999999998 33333222
Q ss_pred hhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcC------------
Q 003088 354 MGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR------------ 421 (849)
Q Consensus 354 ~~~~~~~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~------------ 421 (849)
...+. .+ ..+..++... ..+.|+||||+|.+.+ .+.+.|...++.
T Consensus 84 g~~~~-----~~---~~l~~~~~~~--~~~~v~~iDE~~~l~~-------------~~~e~L~~~~~~~~~~i~~~~~~~ 140 (334)
T 1in4_A 84 GPVLV-----KQ---GDMAAILTSL--ERGDVLFIDEIHRLNK-------------AVEELLYSAIEDFQIDIMIGKGPS 140 (334)
T ss_dssp TTTCC-----SH---HHHHHHHHHC--CTTCEEEEETGGGCCH-------------HHHHHHHHHHHTSCCCC-------
T ss_pred chHhc-----CH---HHHHHHHHHc--cCCCEEEEcchhhcCH-------------HHHHHHHHHHHhcccceeeccCcc
Confidence 11111 01 1122222221 2456999999999932 334444444432
Q ss_pred --------CCeEEEEccChHHHHHHhhccHHHHhccc-cEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHh
Q 003088 422 --------GELQCIASTTQDEHRTQFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHL 492 (849)
Q Consensus 422 --------~~i~vI~at~~~~~~~~~~~d~al~~Rf~-~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~l 492 (849)
..+.+|++|+... .+++++++||. .+.+++++.+++.+||+...+ ..++.++++++..++..
T Consensus 141 ~~~i~~~l~~~~li~at~~~~-----~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~----~~~~~~~~~~~~~ia~~ 211 (334)
T 1in4_A 141 AKSIRIDIQPFTLVGATTRSG-----LLSSPLRSRFGIILELDFYTVKELKEIIKRAAS----LMDVEIEDAAAEMIAKR 211 (334)
T ss_dssp --------CCCEEEEEESCGG-----GSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHH----HTTCCBCHHHHHHHHHT
T ss_pred cccccccCCCeEEEEecCCcc-----cCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHH----HcCCCcCHHHHHHHHHh
Confidence 1367788888765 78999999997 589999999999999988776 45788999999988887
Q ss_pred hhcccccCcchhhHHHHHHHHhhHHH
Q 003088 493 SARYISDRYLPDKAIDLVDEAGSRAH 518 (849)
Q Consensus 493 s~~~~~~r~~p~~ai~ll~~a~~~~~ 518 (849)
+.+ .|..+.++++.+...+.
T Consensus 212 ~~G------~~R~a~~ll~~~~~~a~ 231 (334)
T 1in4_A 212 SRG------TPRIAIRLTKRVRDMLT 231 (334)
T ss_dssp STT------CHHHHHHHHHHHHHHHH
T ss_pred cCC------ChHHHHHHHHHHHHHHH
Confidence 665 34678888887765543
No 81
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.62 E-value=4.2e-15 Score=169.98 Aligned_cols=217 Identities=16% Similarity=0.125 Sum_probs=152.5
Q ss_pred hHHHHhhcC-CCCccccHHHHHHHHHHH---hcC--CCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEee
Q 003088 280 LTARASEEL-IDPVIGRETEIQRIIQIL---CRR--TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD 353 (849)
Q Consensus 280 l~~~~~~~~-l~~iiG~~~~i~~l~~~l---~~~--~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~ 353 (849)
+.+..++.. +++++|+++.++.+..++ ... ...++||+||||||||++|+++|+.+.. +.+++.++
T Consensus 26 l~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~--------~~~~~~~~ 97 (456)
T 2c9o_A 26 LDESGLAKQAASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGS--------KVPFCPMV 97 (456)
T ss_dssp BCTTSCBCSEETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCT--------TSCEEEEE
T ss_pred CCcccChhhchhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCC--------CceEEEEe
Confidence 333444443 589999999887655543 222 3368999999999999999999999832 26788888
Q ss_pred hhhhhccccccchHHHHHHHHHHHH---HhcCCeEEEEcCcchhhhCCCCCCC---------------------------
Q 003088 354 MGLLMAGAKERGELEARVTTLISEI---QKSGDVILFIDEVHTLIGSGTVGRG--------------------------- 403 (849)
Q Consensus 354 ~~~~~~~~~~~g~~e~~l~~l~~~~---~~~~~~ILfIDEi~~l~~~~~~~~~--------------------------- 403 (849)
.+.+. .++.|+.+. +..+|+.+ +...++||||||+|.+++.+.....
T Consensus 98 ~~~~~--~~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 174 (456)
T 2c9o_A 98 GSEVY--STEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDP 174 (456)
T ss_dssp GGGGC--CSSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECH
T ss_pred HHHHH--HHhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhH
Confidence 87776 456788887 88888887 5566889999999887643211100
Q ss_pred ------------------------------------------------CCC-----------------------------
Q 003088 404 ------------------------------------------------NKG----------------------------- 406 (849)
Q Consensus 404 ------------------------------------------------~~~----------------------------- 406 (849)
...
T Consensus 175 ~ll~~l~~~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~~dl~~~a~~t~gga 254 (456)
T 2c9o_A 175 SIFESLQKERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTLHDLDVANARPQGGQ 254 (456)
T ss_dssp HHHHHHHHTTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEHHHHHHTC-------
T ss_pred HHHHHHhhccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHHHHHHHHHHhCCChh
Confidence 000
Q ss_pred ----------------------------------------------------ccHHHHHHHhhhhcCC--CeEEEEc---
Q 003088 407 ----------------------------------------------------TGLDISNLLKPSLGRG--ELQCIAS--- 429 (849)
Q Consensus 407 ----------------------------------------------------~~~~~~~~L~~~le~~--~i~vI~a--- 429 (849)
-+.++++.|+..++.+ .++++++
T Consensus 255 dl~~l~~~i~~p~~~~I~~~lr~~I~~~l~~~~~~g~~~v~~~VliIDEa~~l~~~a~~aLlk~lEe~~~~~~il~tn~~ 334 (456)
T 2c9o_A 255 DILSMMGQLMKPKKTEITDKLRGEINKVVNKYIDQGIAELVPGVLFVDEVHMLDIECFTYLHRALESSIAPIVIFASNRG 334 (456)
T ss_dssp ----------------------CHHHHHHHHHHHTTSEEEEECEEEEESGGGCBHHHHHHHHHHTTSTTCCEEEEEECCS
T ss_pred HHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHHhccccccceEEEEechhhcCHHHHHHHHHHhhccCCCEEEEecCCc
Confidence 0123566677777643 3333344
Q ss_pred ------cChHHHHHHhhccHHHHhccccEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhh-hcccccCcc
Q 003088 430 ------TTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLS-ARYISDRYL 502 (849)
Q Consensus 430 ------t~~~~~~~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls-~~~~~~r~~ 502 (849)
++ .+.....+++.+++||+.+.|++|+.++..++|+..++ ..++.++++++..++.++ .+ -
T Consensus 335 ~~~i~~~~--~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL~~~~~----~~~~~~~~~~~~~i~~~a~~g------~ 402 (456)
T 2c9o_A 335 NCVIRGTE--DITSPHGIPLDLLDRVMIIRTMLYTPQEMKQIIKIRAQ----TEGINISEEALNHLGEIGTKT------T 402 (456)
T ss_dssp EEECBTTS--SCEEETTCCHHHHTTEEEEECCCCCHHHHHHHHHHHHH----HHTCCBCHHHHHHHHHHHHHS------C
T ss_pred cccccccc--cccccccCChhHHhhcceeeCCCCCHHHHHHHHHHHHH----HhCCCCCHHHHHHHHHHccCC------C
Confidence 32 01112378899999999999999999999999988776 456789999999999988 53 4
Q ss_pred hhhHHHHHHHHhhHHHH
Q 003088 503 PDKAIDLVDEAGSRAHI 519 (849)
Q Consensus 503 p~~ai~ll~~a~~~~~~ 519 (849)
|..|+.+++.|...+..
T Consensus 403 ~r~a~~ll~~a~~~A~~ 419 (456)
T 2c9o_A 403 LRYSVQLLTPANLLAKI 419 (456)
T ss_dssp HHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 67899999988666543
No 82
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.60 E-value=1.1e-14 Score=153.11 Aligned_cols=204 Identities=22% Similarity=0.267 Sum_probs=135.8
Q ss_pred cCCCCccccHHHHHHHHHHHhc------------CCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeeh
Q 003088 287 ELIDPVIGRETEIQRIIQILCR------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM 354 (849)
Q Consensus 287 ~~l~~iiG~~~~i~~l~~~l~~------------~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~ 354 (849)
.+|++++|.++.+..+.++... .-..+++|+||||||||+++++++..+ +..++.++.
T Consensus 13 ~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~----------~~~~i~~~~ 82 (254)
T 1ixz_A 13 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA----------RVPFITASG 82 (254)
T ss_dssp CCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHT----------TCCEEEEEH
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHh----------CCCEEEeeH
Confidence 3567888888777666554321 123458999999999999999999987 344566665
Q ss_pred hhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCC-CCCccHHHHHHHhhhhcC----CCeEEEEc
Q 003088 355 GLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRG-NKGTGLDISNLLKPSLGR----GELQCIAS 429 (849)
Q Consensus 355 ~~~~~~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~-~~~~~~~~~~~L~~~le~----~~i~vI~a 429 (849)
..+.. .+.+.....+..+++.+....++++||||+|.+......+.+ .........+.+...++. ..++++++
T Consensus 83 ~~~~~--~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~ 160 (254)
T 1ixz_A 83 SDFVE--MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAA 160 (254)
T ss_dssp HHHHH--SCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEE
T ss_pred HHHHH--HHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEc
Confidence 55542 235666777888898887667899999999998643221000 001112234444444442 23677888
Q ss_pred cChHHHHHHhhccHHHHh--ccc-cEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHH-HHHHHHhhhcccccCcchhh
Q 003088 430 TTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEA-INAAVHLSARYISDRYLPDK 505 (849)
Q Consensus 430 t~~~~~~~~~~~d~al~~--Rf~-~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~-l~~~a~ls~~~~~~r~~p~~ 505 (849)
|+.++ .+|+++.| ||. .|.++.|+.++|.+||+.+.. +..++++. +..++..+.+|. +.+
T Consensus 161 t~~p~-----~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~------~~~~~~~~~~~~la~~~~G~~-----~~d 224 (254)
T 1ixz_A 161 TNRPD-----ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR------GKPLAEDVDLALLAKRTPGFV-----GAD 224 (254)
T ss_dssp ESCGG-----GSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHT------TSCBCTTCCHHHHHHTCTTCC-----HHH
T ss_pred cCCch-----hCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHc------CCCCCcccCHHHHHHHcCCCC-----HHH
Confidence 88876 68999998 887 699999999999999976543 23444433 566777666654 356
Q ss_pred HHHHHHHHhhHHH
Q 003088 506 AIDLVDEAGSRAH 518 (849)
Q Consensus 506 ai~ll~~a~~~~~ 518 (849)
...++.+|+..+.
T Consensus 225 l~~~~~~a~~~a~ 237 (254)
T 1ixz_A 225 LENLLNEAALLAA 237 (254)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7778887766543
No 83
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.60 E-value=4.1e-15 Score=169.97 Aligned_cols=204 Identities=21% Similarity=0.262 Sum_probs=142.4
Q ss_pred hcCCCCccccHHHHHHHHHHHhc---C---------CCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEee
Q 003088 286 EELIDPVIGRETEIQRIIQILCR---R---------TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD 353 (849)
Q Consensus 286 ~~~l~~iiG~~~~i~~l~~~l~~---~---------~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~ 353 (849)
+.+|++++|.++.+..+.++... + ...+++|+||||||||++|++||..+ +..++.++
T Consensus 27 ~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~----------~~~~i~i~ 96 (499)
T 2dhr_A 27 KVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA----------RVPFITAS 96 (499)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT----------TCCEEEEE
T ss_pred CCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEe
Confidence 45689999999888887775421 1 13468999999999999999999987 45677777
Q ss_pred hhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCC-CCCccHHHHHHHhhhhc----CCCeEEEE
Q 003088 354 MGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRG-NKGTGLDISNLLKPSLG----RGELQCIA 428 (849)
Q Consensus 354 ~~~~~~~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~-~~~~~~~~~~~L~~~le----~~~i~vI~ 428 (849)
...+.. .+.|....+++.+|+.+....++|+||||+|.+......+.+ .........+.|+..++ +..+++|+
T Consensus 97 g~~~~~--~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviA 174 (499)
T 2dhr_A 97 GSDFVE--MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMA 174 (499)
T ss_dssp GGGGTS--SCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEE
T ss_pred hhHHHH--hhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEE
Confidence 776653 456777888888888877666789999999999654322100 00011223444444444 23478899
Q ss_pred ccChHHHHHHhhccHHHHh--ccc-cEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHH-HHHHHHhhhcccccCcchh
Q 003088 429 STTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEA-INAAVHLSARYISDRYLPD 504 (849)
Q Consensus 429 at~~~~~~~~~~~d~al~~--Rf~-~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~-l~~~a~ls~~~~~~r~~p~ 504 (849)
+||.++ .+|+++.| ||. .|.|+.|+.++|.+||+.+.+ ++.+++++ +..++..+.+|. +.
T Consensus 175 atn~p~-----~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~------~~~l~~dv~l~~lA~~t~G~~-----ga 238 (499)
T 2dhr_A 175 ATNRPD-----ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR------GKPLAEDVDLALLAKRTPGFV-----GA 238 (499)
T ss_dssp CCSCGG-----GSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTS------SSCCCCSSTTHHHHTTSCSCC-----HH
T ss_pred ecCChh-----hcCcccccccccceEEecCCCCHHHHHHHHHHHHh------cCCCChHHHHHHHHHhcCCCC-----HH
Confidence 999886 58999998 786 699999999999999965432 33444433 556666655543 35
Q ss_pred hHHHHHHHHhhHH
Q 003088 505 KAIDLVDEAGSRA 517 (849)
Q Consensus 505 ~ai~ll~~a~~~~ 517 (849)
+...++.+|+..+
T Consensus 239 dL~~lv~~Aa~~A 251 (499)
T 2dhr_A 239 DLENLLNEAALLA 251 (499)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6777888776554
No 84
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.59 E-value=4.6e-15 Score=161.87 Aligned_cols=161 Identities=20% Similarity=0.290 Sum_probs=118.8
Q ss_pred ccccccHHHHHHHHHHHHHhhc---CCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccc
Q 003088 629 KRVIGQDEAVAAISRAVKRSRV---GLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVS 705 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~~~~---g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~ 705 (849)
+.|+|++.+++.|...+..... -......|..++||+||||||||++|+++|+.+ +.+|+.++++++...
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~---~~~~~~v~~~~l~~~---- 90 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSSSDLVSK---- 90 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH---TCEEEEEEHHHHHTT----
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH---CCCEEEEchHHHhhc----
Confidence 5699999999999988854311 111123444569999999999999999999986 668999999876432
Q ss_pred cccCCCCCccccccC--cchhHHHHhCCCeEEEEeCccccCH-----------HHHHHHHHHhhcCeeecCCCceeecCC
Q 003088 706 KLIGSPPGYVGYEEG--GLLTEAIRRRPFTLLLLDEIEKAHP-----------DIFNILLQVFEDGHLTDSHGRRVSFKN 772 (849)
Q Consensus 706 ~l~g~~~g~vg~~~~--~~l~~~i~~~~~~vl~lDEid~l~~-----------~~~~~Ll~~le~g~~~~~~g~~~~~~~ 772 (849)
|+|..+. ..+....+...++||||||||.+.+ .+++.|+..|+.-. ....+
T Consensus 91 --------~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~--------~~~~~ 154 (322)
T 3eie_A 91 --------WMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVG--------NDSQG 154 (322)
T ss_dssp --------TGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGG--------TSCCC
T ss_pred --------ccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcccc--------ccCCc
Confidence 3443321 1233444556679999999998854 57899999997521 01247
Q ss_pred eEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHHHccccC
Q 003088 773 ALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQLPL 848 (849)
Q Consensus 773 ~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~I~~ 848 (849)
++||+|||.... +++.|++||+..+.|++++.++..+|++
T Consensus 155 v~vi~atn~~~~------------------------------------ld~al~~Rf~~~i~~~~p~~~~r~~il~ 194 (322)
T 3eie_A 155 VLVLGATNIPWQ------------------------------------LDSAIRRRFERRIYIPLPDLAARTTMFE 194 (322)
T ss_dssp EEEEEEESCGGG------------------------------------SCHHHHHHCCEEEECCCCCHHHHHHHHH
T ss_pred eEEEEecCChhh------------------------------------CCHHHHcccCeEEEeCCCCHHHHHHHHH
Confidence 889999996321 7899999999999999999998888764
No 85
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.58 E-value=1.6e-14 Score=157.43 Aligned_cols=162 Identities=20% Similarity=0.267 Sum_probs=117.4
Q ss_pred ccccccHHHHHHHHHHHHHhhc---CCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccc
Q 003088 629 KRVIGQDEAVAAISRAVKRSRV---GLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVS 705 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~~~~---g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~ 705 (849)
+.|+|++++++.|...+..... -......|..++||+||||||||++|+++|+.+ .+.+|+.++++++..
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~--~~~~~~~i~~~~l~~----- 84 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA--NNSTFFSISSSDLVS----- 84 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHT--TSCEEEEEECCSSCC-----
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHc--CCCcEEEEEhHHHHh-----
Confidence 6799999999999888864211 011112334569999999999999999999986 356799999887643
Q ss_pred cccCCCCCccccccC--cchhHHHHhCCCeEEEEeCccccC-----------HHHHHHHHHHhhcCeeecCCCceeecCC
Q 003088 706 KLIGSPPGYVGYEEG--GLLTEAIRRRPFTLLLLDEIEKAH-----------PDIFNILLQVFEDGHLTDSHGRRVSFKN 772 (849)
Q Consensus 706 ~l~g~~~g~vg~~~~--~~l~~~i~~~~~~vl~lDEid~l~-----------~~~~~~Ll~~le~g~~~~~~g~~~~~~~ 772 (849)
.|+|..+. ..+....+....+||||||||.+. ..+++.|+..|+.-. ....+
T Consensus 85 -------~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~--------~~~~~ 149 (322)
T 1xwi_A 85 -------KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVG--------VDNDG 149 (322)
T ss_dssp -------SSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSS--------SCCTT
T ss_pred -------hhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhccc--------ccCCC
Confidence 23443331 123334455667999999999882 357888999887621 11347
Q ss_pred eEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHHHccccC
Q 003088 773 ALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQLPL 848 (849)
Q Consensus 773 ~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~I~~ 848 (849)
++||++||.... +++.|++||+..+.+++++.++..+|++
T Consensus 150 v~vI~atn~~~~------------------------------------ld~al~rRf~~~i~i~~P~~~~r~~il~ 189 (322)
T 1xwi_A 150 ILVLGATNIPWV------------------------------------LDSAIRRRFEKRIYIPLPEPHARAAMFK 189 (322)
T ss_dssp EEEEEEESCTTT------------------------------------SCHHHHHTCCEEEECCCCCHHHHHHHHH
T ss_pred EEEEEecCCccc------------------------------------CCHHHHhhcCeEEEeCCcCHHHHHHHHH
Confidence 899999997421 7899999999999999999998887763
No 86
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.57 E-value=3.5e-14 Score=151.51 Aligned_cols=204 Identities=22% Similarity=0.270 Sum_probs=136.3
Q ss_pred hcCCCCccccHHHHHHHHHHHhc------------CCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEee
Q 003088 286 EELIDPVIGRETEIQRIIQILCR------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD 353 (849)
Q Consensus 286 ~~~l~~iiG~~~~i~~l~~~l~~------------~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~ 353 (849)
+..+++++|.++.+..+.++... .-..+++|+||||||||+++++|+..+ ...++.++
T Consensus 36 ~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~----------~~~~i~~~ 105 (278)
T 1iy2_A 36 KVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA----------RVPFITAS 105 (278)
T ss_dssp CCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHT----------TCCEEEEE
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHc----------CCCEEEec
Confidence 34678999999887777665421 123458999999999999999999987 34456666
Q ss_pred hhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCC-CCCccHHHHHHHhhhhcC----CCeEEEE
Q 003088 354 MGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRG-NKGTGLDISNLLKPSLGR----GELQCIA 428 (849)
Q Consensus 354 ~~~~~~~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~-~~~~~~~~~~~L~~~le~----~~i~vI~ 428 (849)
...+.. ...+.....+..+++.+....++++|+||++.+......+.+ .........+.+...++. ..+++++
T Consensus 106 ~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a 183 (278)
T 1iy2_A 106 GSDFVE--MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMA 183 (278)
T ss_dssp HHHHHH--STTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEE
T ss_pred HHHHHH--HHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEE
Confidence 555442 234666777888999887667899999999998643221000 000112233333344442 2367788
Q ss_pred ccChHHHHHHhhccHHHHh--ccc-cEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHH-HHHHHHhhhcccccCcchh
Q 003088 429 STTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEA-INAAVHLSARYISDRYLPD 504 (849)
Q Consensus 429 at~~~~~~~~~~~d~al~~--Rf~-~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~-l~~~a~ls~~~~~~r~~p~ 504 (849)
+|+.++ .+|+++.+ ||. .|.|+.|+.++|.+||+.+.+ +..+++++ +..++..+.+|. +.
T Consensus 184 ~t~~p~-----~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~------~~~~~~~~~~~~la~~~~G~~-----~~ 247 (278)
T 1iy2_A 184 ATNRPD-----ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR------GKPLAEDVDLALLAKRTPGFV-----GA 247 (278)
T ss_dssp EESCTT-----SSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHT------TSCBCTTCCHHHHHHTCTTCC-----HH
T ss_pred ecCCch-----hCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHc------cCCCCcccCHHHHHHHcCCCC-----HH
Confidence 888876 68999998 886 699999999999999986543 23444433 566666666554 34
Q ss_pred hHHHHHHHHhhHH
Q 003088 505 KAIDLVDEAGSRA 517 (849)
Q Consensus 505 ~ai~ll~~a~~~~ 517 (849)
+...++.+|+..+
T Consensus 248 dl~~l~~~a~~~a 260 (278)
T 1iy2_A 248 DLENLLNEAALLA 260 (278)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5667777776544
No 87
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.57 E-value=1.6e-14 Score=153.60 Aligned_cols=197 Identities=15% Similarity=0.120 Sum_probs=132.6
Q ss_pred CCccccHHHHHHHHH-------HHh---cCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhc
Q 003088 290 DPVIGRETEIQRIIQ-------ILC---RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA 359 (849)
Q Consensus 290 ~~iiG~~~~i~~l~~-------~l~---~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~ 359 (849)
+.++|+++.++.+.. .+. .....++||+||||||||++|+++|+.+ +++++.++......
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~----------~~~~~~i~~~~~~~ 102 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEES----------NFPFIKICSPDKMI 102 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHH----------TCSEEEEECGGGCT
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHh----------CCCEEEEeCHHHhc
Confidence 457888777666555 232 3455689999999999999999999986 56677776655433
Q ss_pred cccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcC-----CCeEEEEccChHH
Q 003088 360 GAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR-----GELQCIASTTQDE 434 (849)
Q Consensus 360 ~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~-----~~i~vI~at~~~~ 434 (849)
+. ..+.....++.+++.+....+.||||||+|.+++....+ ......+++.|...++. ..+++|++||..+
T Consensus 103 g~-~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~---~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~ 178 (272)
T 1d2n_A 103 GF-SETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIG---PRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKD 178 (272)
T ss_dssp TC-CHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTT---TBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHH
T ss_pred CC-chHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCC---hhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChh
Confidence 32 223445667888888877778999999999997643321 12345667777776652 3577899999876
Q ss_pred HHHHhhccH-HHHhccc-cEEecCCCH-HHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhcccccCcchhhHHHHHH
Q 003088 435 HRTQFEKDK-ALARRFQ-PVLISEPSQ-EDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVD 511 (849)
Q Consensus 435 ~~~~~~~d~-al~~Rf~-~i~~~~ps~-~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~~~r~~p~~ai~ll~ 511 (849)
.+++ .+.+||. .|.+++++. ++...++.. . ..++++.+..++..+.+|-.... ..+++++++
T Consensus 179 -----~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~-------~--~~~~~~~~~~l~~~~~g~~~~g~-ir~l~~~l~ 243 (272)
T 1d2n_A 179 -----VLQEMEMLNAFSTTIHVPNIATGEQLLEALEL-------L--GNFKDKERTTIAQQVKGKKVWIG-IKKLLMLIE 243 (272)
T ss_dssp -----HHHHTTCTTTSSEEEECCCEEEHHHHHHHHHH-------H--TCSCHHHHHHHHHHHTTSEEEEC-HHHHHHHHH
T ss_pred -----hcchhhhhcccceEEcCCCccHHHHHHHHHHh-------c--CCCCHHHHHHHHHHhcCCCcccc-HHHHHHHHH
Confidence 4555 6778986 578877765 444444432 1 25789999999998888632111 234566666
Q ss_pred HHhh
Q 003088 512 EAGS 515 (849)
Q Consensus 512 ~a~~ 515 (849)
.+..
T Consensus 244 ~a~~ 247 (272)
T 1d2n_A 244 MSLQ 247 (272)
T ss_dssp HHTT
T ss_pred HHhh
Confidence 6543
No 88
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.56 E-value=3.3e-14 Score=188.14 Aligned_cols=140 Identities=14% Similarity=0.181 Sum_probs=97.2
Q ss_pred CCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhccccccchHHHHHHHHHHHH-H---------
Q 003088 310 TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI-Q--------- 379 (849)
Q Consensus 310 ~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~~~~~~g~~e~~l~~l~~~~-~--------- 379 (849)
.+.++||+||||||||++|+.+.... .+..++.+++++.... .. +...++.. .
T Consensus 1266 ~~~~vLL~GPpGtGKT~la~~~l~~~---------~~~~~~~infsa~ts~----~~----~~~~i~~~~~~~~~~~g~~ 1328 (2695)
T 4akg_A 1266 SKRGIILCGPPGSGKTMIMNNALRNS---------SLYDVVGINFSKDTTT----EH----ILSALHRHTNYVTTSKGLT 1328 (2695)
T ss_dssp HTCEEEEECSTTSSHHHHHHHHHHSC---------SSCEEEEEECCTTCCH----HH----HHHHHHHHBCCEEETTTEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHhcC---------CCCceEEEEeecCCCH----HH----HHHHHHHHhhhccccCCcc
Confidence 34689999999999999996655432 1455666666554321 11 22333322 0
Q ss_pred -----hcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCC--------------CeEEEEccChHHHHHHhh
Q 003088 380 -----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG--------------ELQCIASTTQDEHRTQFE 440 (849)
Q Consensus 380 -----~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~--------------~i~vI~at~~~~~~~~~~ 440 (849)
.+.+.||||||++.... + +.++....++|+..++.+ ++.+|+|||+........
T Consensus 1329 ~~P~~~gk~~VlFiDEinmp~~--d-----~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~ 1401 (2695)
T 4akg_A 1329 LLPKSDIKNLVLFCDEINLPKL--D-----KYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIP 1401 (2695)
T ss_dssp EEEBSSSSCEEEEEETTTCSCC--C-----SSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCC
T ss_pred ccCCCCCceEEEEecccccccc--c-----ccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCcc
Confidence 12347999999986422 1 134556788888888753 368999999874223357
Q ss_pred ccHHHHhccccEEecCCCHHHHHHHHHHHHHHH
Q 003088 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKY 473 (849)
Q Consensus 441 ~d~al~~Rf~~i~~~~ps~~e~~~iL~~~~~~~ 473 (849)
++++|.|||..+.++.|+.+++..|+..+...+
T Consensus 1402 l~~rllRrf~vi~i~~P~~~~l~~I~~~il~~~ 1434 (2695)
T 4akg_A 1402 MSERFTRHAAILYLGYPSGKSLSQIYEIYYKAI 1434 (2695)
T ss_dssp CCHHHHTTEEEEECCCCTTTHHHHHHHHHHHHH
T ss_pred CChhhhheeeEEEeCCCCHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999877644
No 89
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.56 E-value=3.1e-14 Score=158.06 Aligned_cols=192 Identities=23% Similarity=0.274 Sum_probs=128.8
Q ss_pred CccccHHHHHHHHHHHhc---------------CCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehh
Q 003088 291 PVIGRETEIQRIIQILCR---------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMG 355 (849)
Q Consensus 291 ~iiG~~~~i~~l~~~l~~---------------~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~ 355 (849)
.++|++..++.+...+.. ....++||+||||||||++|++||+.+ +.+++.+++.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~----------~~~~~~~~~~ 85 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL----------DVPFTMADAT 85 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT----------TCCEEEEEHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc----------CCCEEEechH
Confidence 379999999998887721 145789999999999999999999998 6778888887
Q ss_pred hhhccccccchH-HHHHHHHHHHH----HhcCCeEEEEcCcchhhhCCCCCCCCC-CccHHHHHHHhhhhcCC-------
Q 003088 356 LLMAGAKERGEL-EARVTTLISEI----QKSGDVILFIDEVHTLIGSGTVGRGNK-GTGLDISNLLKPSLGRG------- 422 (849)
Q Consensus 356 ~~~~~~~~~g~~-e~~l~~l~~~~----~~~~~~ILfIDEi~~l~~~~~~~~~~~-~~~~~~~~~L~~~le~~------- 422 (849)
.+... .+.|.. +..+..++..+ ....++||||||++.+.+.......+. ..+..+++.|+.+|+..
T Consensus 86 ~l~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~ 164 (363)
T 3hws_A 86 TLTEA-GYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQ 164 (363)
T ss_dssp HHTTC-HHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC-------
T ss_pred Hhccc-ccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCc
Confidence 76532 233432 44555665554 333467999999999976533211101 11123788898888721
Q ss_pred ----------------CeEEEEccChHHHHHH----------------------------------------hhccHHHH
Q 003088 423 ----------------ELQCIASTTQDEHRTQ----------------------------------------FEKDKALA 446 (849)
Q Consensus 423 ----------------~i~vI~at~~~~~~~~----------------------------------------~~~d~al~ 446 (849)
++.+|++++...+... ..+.++|.
T Consensus 165 ~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~ 244 (363)
T 3hws_A 165 GGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFI 244 (363)
T ss_dssp ---------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHH
T ss_pred cccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHh
Confidence 1234444443211111 11579999
Q ss_pred hcccc-EEecCCCHHHHHHHHHH----HHHHHHh-----hcCCccCHHHHHHHHHhh
Q 003088 447 RRFQP-VLISEPSQEDAVRILLG----LREKYEA-----HHNCKFTLEAINAAVHLS 493 (849)
Q Consensus 447 ~Rf~~-i~~~~ps~~e~~~iL~~----~~~~~~~-----~~~~~i~~~~l~~~a~ls 493 (849)
+||.. +.|.+|+.+++.+|+.. +..++.. ...+.+++++++.++..+
T Consensus 245 ~R~~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~ 301 (363)
T 3hws_A 245 GRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKA 301 (363)
T ss_dssp TTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHH
T ss_pred cccCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhh
Confidence 99985 66899999999999986 5554432 223568999999888754
No 90
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.56 E-value=6.2e-15 Score=158.51 Aligned_cols=159 Identities=13% Similarity=0.161 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccccccCCCCCc
Q 003088 635 DEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGY 714 (849)
Q Consensus 635 ~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~ 714 (849)
+..++.+...+............|. .+||+||||||||++|+++|+.+ +.+++.++|+++... |
T Consensus 13 ~~~~~~~~~~~~k~~l~~~~~~~p~-~lLl~GppGtGKT~la~aiA~~l---~~~~i~v~~~~l~~~------------~ 76 (293)
T 3t15_A 13 PAFMDKLVVHITKNFLKLPNIKVPL-ILGIWGGKGQGKSFQCELVFRKM---GINPIMMSAGELESG------------N 76 (293)
T ss_dssp HHHHHHHHHHHHHTTSCCTTCCCCS-EEEEEECTTSCHHHHHHHHHHHH---TCCCEEEEHHHHHCC-------------
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCe-EEEEECCCCCCHHHHHHHHHHHh---CCCEEEEeHHHhhhc------------c
Confidence 3444555555554444444334444 49999999999999999999998 678999999877542 3
Q ss_pred cccccCcchhHHH-------HhCCCeEEEEeCccccCH-------------HHHHHHHHHhhcCeeecCCC--ceeecCC
Q 003088 715 VGYEEGGLLTEAI-------RRRPFTLLLLDEIEKAHP-------------DIFNILLQVFEDGHLTDSHG--RRVSFKN 772 (849)
Q Consensus 715 vg~~~~~~l~~~i-------~~~~~~vl~lDEid~l~~-------------~~~~~Ll~~le~g~~~~~~g--~~~~~~~ 772 (849)
+|..+ +.+...+ +...++||||||||++.+ .+++.|+++|+........+ ......+
T Consensus 77 ~g~~~-~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~ 155 (293)
T 3t15_A 77 AGEPA-KLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENAR 155 (293)
T ss_dssp --HHH-HHHHHHHHHHHHHHTTSSCCCEEEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCC
T ss_pred CchhH-HHHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCC
Confidence 44332 1222333 344679999999998865 36799999999655433222 2334568
Q ss_pred eEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHh--hccccEEEcCCCCHHHHccccC
Q 003088 773 ALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELL--NRIDEVVVFRSLEKAQVCQLPL 848 (849)
Q Consensus 773 ~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell--~R~d~~i~f~pl~~~~~~~I~~ 848 (849)
++||+|||.... ++++|+ .|||..+.+ | +.++..+|++
T Consensus 156 v~vI~ttN~~~~------------------------------------ld~al~R~~R~d~~i~~-P-~~~~r~~Il~ 195 (293)
T 3t15_A 156 VPIIVTGNDFST------------------------------------LYAPLIRDGRMEKFYWA-P-TREDRIGVCT 195 (293)
T ss_dssp CCEEEECSSCCC--------------------------------------CHHHHHHHEEEEEEC-C-CHHHHHHHHH
T ss_pred cEEEEecCCccc------------------------------------CCHHHhCCCCCceeEeC-c-CHHHHHHHHH
Confidence 999999997421 667787 589877753 4 8888777753
No 91
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.56 E-value=5.6e-14 Score=152.21 Aligned_cols=202 Identities=18% Similarity=0.220 Sum_probs=135.5
Q ss_pred CCccccHHHHHHHHHHHhcCC---------CCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhcc
Q 003088 290 DPVIGRETEIQRIIQILCRRT---------KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAG 360 (849)
Q Consensus 290 ~~iiG~~~~i~~l~~~l~~~~---------~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~~ 360 (849)
+.++|++..++.+...+.... ..+++|+||||||||++|+++++.+... +..++.+++..+...
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~-------~~~~~~~~~~~~~~~ 89 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT-------EEAMIRIDMTEYMEK 89 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSC-------GGGEEEEEGGGCCST
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCC-------CcceEEeeccccccc
Confidence 368899999999888775431 2478999999999999999999998543 334566666543211
Q ss_pred c----------cccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCC--------
Q 003088 361 A----------KERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-------- 422 (849)
Q Consensus 361 ~----------~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~-------- 422 (849)
. .+.|... ...+...+....++||||||++.+ ..++++.|..+++.+
T Consensus 90 ~~~~~l~g~~~~~~~~~~--~~~~~~~~~~~~~~vl~lDEi~~l-------------~~~~~~~Ll~~le~~~~~~~~~~ 154 (311)
T 4fcw_A 90 HAVSRLIGAPPGYVGYEE--GGQLTEAVRRRPYSVILFDAIEKA-------------HPDVFNILLQMLDDGRLTDSHGR 154 (311)
T ss_dssp THHHHHHCCCTTSTTTTT--CCHHHHHHHHCSSEEEEEETGGGS-------------CHHHHHHHHHHHHHSEEECTTSC
T ss_pred ccHHHhcCCCCccccccc--cchHHHHHHhCCCeEEEEeChhhc-------------CHHHHHHHHHHHhcCEEEcCCCC
Confidence 0 0001000 012333444456689999999999 456788888888753
Q ss_pred -----CeEEEEccChH---------------HHHH------HhhccHHHHhccc-cEEecCCCHHHHHHHHHHHHHHHHh
Q 003088 423 -----ELQCIASTTQD---------------EHRT------QFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEA 475 (849)
Q Consensus 423 -----~i~vI~at~~~---------------~~~~------~~~~d~al~~Rf~-~i~~~~ps~~e~~~iL~~~~~~~~~ 475 (849)
++++|+|||.. +... .-.++++|.+||. .+.+.+|+.+++..|++.++.++..
T Consensus 155 ~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~ 234 (311)
T 4fcw_A 155 TVDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRA 234 (311)
T ss_dssp EEECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHH
T ss_pred EEECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 45599999872 1111 1256899999995 7999999999999999987766543
Q ss_pred h-----cCCccCHHHHHHHHHhhhcccccCcchhhHHHHHHHHhhH
Q 003088 476 H-----HNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSR 516 (849)
Q Consensus 476 ~-----~~~~i~~~~l~~~a~ls~~~~~~r~~p~~ai~ll~~a~~~ 516 (849)
. ..+.++++++..++..+-. ...-......+++.++..
T Consensus 235 ~~~~~~~~~~~~~~~~~~l~~~~~~---~~gn~R~L~~~i~~~~~~ 277 (311)
T 4fcw_A 235 RLAEKRISLELTEAAKDFLAERGYD---PVFGARPLRRVIQRELET 277 (311)
T ss_dssp HHHTTTCEEEECHHHHHHHHHHSCB---TTTBTTTHHHHHHHHTHH
T ss_pred HHHhCCcEEEeCHHHHHHHHHhCCC---ccCCchhHHHHHHHHHHH
Confidence 2 2467999999988775321 011223455666666553
No 92
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.56 E-value=2.7e-14 Score=156.36 Aligned_cols=172 Identities=18% Similarity=0.259 Sum_probs=122.1
Q ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeecccc
Q 003088 619 LLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEY 698 (849)
Q Consensus 619 ~~~~l~~~l~~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~ 698 (849)
....+...+.+.++|++++++.+..++... .++||+||||||||++|+++++.+ +.++..++|...
T Consensus 17 ~~~~~~~~~~~~i~g~~~~~~~l~~~l~~~-----------~~vll~G~pGtGKT~la~~la~~~---~~~~~~i~~~~~ 82 (331)
T 2r44_A 17 KIKEVIDEVGKVVVGQKYMINRLLIGICTG-----------GHILLEGVPGLAKTLSVNTLAKTM---DLDFHRIQFTPD 82 (331)
T ss_dssp HHHHHHHHHTTTCCSCHHHHHHHHHHHHHT-----------CCEEEESCCCHHHHHHHHHHHHHT---TCCEEEEECCTT
T ss_pred HHHHHHHHhccceeCcHHHHHHHHHHHHcC-----------CeEEEECCCCCcHHHHHHHHHHHh---CCCeEEEecCCC
Confidence 455677778899999999999888777642 249999999999999999999986 456888887422
Q ss_pred ccccccccccCCC-----CCccccccCcchhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeec-CC
Q 003088 699 MERHTVSKLIGSP-----PGYVGYEEGGLLTEAIRRRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSF-KN 772 (849)
Q Consensus 699 ~~~~~~~~l~g~~-----~g~vg~~~~~~l~~~i~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~-~~ 772 (849)
.. ...++|.. .+...... +.+ ..+||||||++.+++.+++.|++.|+++.+... |..... .+
T Consensus 83 ~~---~~~l~g~~~~~~~~~~~~~~~-g~l-------~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~-g~~~~~~~~ 150 (331)
T 2r44_A 83 LL---PSDLIGTMIYNQHKGNFEVKK-GPV-------FSNFILADEVNRSPAKVQSALLECMQEKQVTIG-DTTYPLDNP 150 (331)
T ss_dssp CC---HHHHHEEEEEETTTTEEEEEE-CTT-------CSSEEEEETGGGSCHHHHHHHHHHHHHSEEEET-TEEEECCSS
T ss_pred CC---hhhcCCceeecCCCCceEecc-Ccc-------cccEEEEEccccCCHHHHHHHHHHHhcCceeeC-CEEEECCCC
Confidence 21 11122210 00000000 111 137999999999999999999999999987763 434433 37
Q ss_pred eEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHHHcccc
Q 003088 773 ALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQLP 847 (849)
Q Consensus 773 ~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~I~ 847 (849)
++||+|+|+... .|.. .++++|++||+..+.+.+++.++..+|+
T Consensus 151 ~~viat~np~~~---------~~~~----------------------~l~~~l~~Rf~~~i~i~~p~~~~~~~il 194 (331)
T 2r44_A 151 FLVLATQNPVEQ---------EGTY----------------------PLPEAQVDRFMMKIHLTYLDKESELEVM 194 (331)
T ss_dssp CEEEEEECTTCC---------SCCC----------------------CCCHHHHTTSSEEEECCCCCHHHHHHHH
T ss_pred EEEEEecCCCcc---------cCcc----------------------cCCHHHHhheeEEEEcCCCCHHHHHHHH
Confidence 888889886320 0100 1789999999888999999999888775
No 93
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.56 E-value=5.7e-14 Score=153.33 Aligned_cols=197 Identities=14% Similarity=0.157 Sum_probs=128.3
Q ss_pred CCCCcc-ccH--HHHHHHHHHHhcC--CCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhcccc
Q 003088 288 LIDPVI-GRE--TEIQRIIQILCRR--TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAK 362 (849)
Q Consensus 288 ~l~~ii-G~~--~~i~~l~~~l~~~--~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~~~~ 362 (849)
+|++++ |.. .....+..++... ..++++|+||||||||++|+++++.+... +.+++.+++..+...
T Consensus 9 ~f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~-------~~~~~~i~~~~~~~~-- 79 (324)
T 1l8q_A 9 TLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR-------GYRVIYSSADDFAQA-- 79 (324)
T ss_dssp CSSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT-------TCCEEEEEHHHHHHH--
T ss_pred CcccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC-------CCEEEEEEHHHHHHH--
Confidence 467776 433 3344455555443 35789999999999999999999998654 456777776655311
Q ss_pred ccchHHHH-HHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCCCeEEEEccChHHHHHHhhc
Q 003088 363 ERGELEAR-VTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEK 441 (849)
Q Consensus 363 ~~g~~e~~-l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~~i~vI~at~~~~~~~~~~~ 441 (849)
..+.+... ...+.... ..+.||||||+|.+.+.. .....+...+....+.+..++|++++... .+..+
T Consensus 80 ~~~~~~~~~~~~~~~~~--~~~~vL~iDEi~~l~~~~-------~~~~~l~~~l~~~~~~~~~iii~~~~~~~--~l~~l 148 (324)
T 1l8q_A 80 MVEHLKKGTINEFRNMY--KSVDLLLLDDVQFLSGKE-------RTQIEFFHIFNTLYLLEKQIILASDRHPQ--KLDGV 148 (324)
T ss_dssp HHHHHHHTCHHHHHHHH--HTCSEEEEECGGGGTTCH-------HHHHHHHHHHHHHHHTTCEEEEEESSCGG--GCTTS
T ss_pred HHHHHHcCcHHHHHHHh--cCCCEEEEcCcccccCCh-------HHHHHHHHHHHHHHHCCCeEEEEecCChH--HHHHh
Confidence 11111111 11122222 235799999999994210 11234445555555666666666655443 22357
Q ss_pred cHHHHhcc---ccEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhcccccCcchhhHHHHHHHHhhH
Q 003088 442 DKALARRF---QPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSR 516 (849)
Q Consensus 442 d~al~~Rf---~~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~~~r~~p~~ai~ll~~a~~~ 516 (849)
+++|.+|| ..+.|++ +.+++.+||+..+. ..++.++++++..++..+ +.+ ..+..+++.++..
T Consensus 149 ~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~----~~~~~l~~~~l~~l~~~~-g~~------r~l~~~l~~~~~~ 214 (324)
T 1l8q_A 149 SDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLK----EFNLELRKEVIDYLLENT-KNV------REIEGKIKLIKLK 214 (324)
T ss_dssp CHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHH----HTTCCCCHHHHHHHHHHC-SSH------HHHHHHHHHHHHH
T ss_pred hhHhhhcccCceEEEeCC-CHHHHHHHHHHHHH----hcCCCCCHHHHHHHHHhC-CCH------HHHHHHHHHHHHc
Confidence 89999999 4699999 99999999988776 467899999999998887 543 3455666665544
No 94
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.56 E-value=1.3e-14 Score=165.93 Aligned_cols=180 Identities=18% Similarity=0.207 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeecc
Q 003088 617 RMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMS 696 (849)
Q Consensus 617 ~~~~~~l~~~l~~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~ 696 (849)
......+...+...++|++++++.+..++... .++||+||||||||++|++||+.+ +...+|..+.+.
T Consensus 10 ~~~~~~l~~~l~~~ivGq~~~i~~l~~al~~~-----------~~VLL~GpPGtGKT~LAraLa~~l-~~~~~f~~~~~~ 77 (500)
T 3nbx_X 10 AERISRLSSSLEKGLYERSHAIRLCLLAALSG-----------ESVFLLGPPGIAKSLIARRLKFAF-QNARAFEYLMTR 77 (500)
T ss_dssp HHHHHHHHHHHHTTCSSCHHHHHHHHHHHHHT-----------CEEEEECCSSSSHHHHHHHGGGGB-SSCCEEEEECCT
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC-----------CeeEeecCchHHHHHHHHHHHHHH-hhhhHHHHHHHh
Confidence 44567778888899999999998887776542 259999999999999999999986 334566666664
Q ss_pred ccccccccccccCCCCCccccccCcchhHHHHh--CCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeE
Q 003088 697 EYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRR--RPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNAL 774 (849)
Q Consensus 697 ~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~i~~--~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~ 774 (849)
-. ..+.++|...++... ..+.+..+... ...+|||||||+++++.+++.|+++|+++.+.. .|.....+..+
T Consensus 78 ~~----t~~dL~G~~~~~~~~-~~g~~~~~~~g~l~~~~IL~IDEI~r~~~~~q~~LL~~lee~~v~i-~G~~~~~~~~~ 151 (500)
T 3nbx_X 78 FS----TPEEVFGPLSIQALK-DEGRYERLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERQFRN-GAHVEKIPMRL 151 (500)
T ss_dssp TC----CHHHHHCCBC-----------CBCCTTSGGGCSEEEEESGGGCCHHHHHHHHHHHHSSEEEC-SSSEEECCCCE
T ss_pred cC----CHHHhcCcccHHHHh-hchhHHhhhccCCCcceeeeHHhHhhhcHHHHHHHHHHHHHHhccC-CCCcCCcchhh
Confidence 21 234566642211100 01111111000 024699999999999999999999999999887 44455555545
Q ss_pred EEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCH-HHHcccc
Q 003088 775 IVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEK-AQVCQLP 847 (849)
Q Consensus 775 iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~-~~~~~I~ 847 (849)
+|++||..++ ... +.+++++||...+.+++++. ++...|+
T Consensus 152 iI~ATN~lpe----~~~-----------------------------~~~aLldRF~~~i~v~~p~~~ee~~~IL 192 (500)
T 3nbx_X 152 LVAASNELPE----ADS-----------------------------SLEALYDRMLIRLWLDKVQDKANFRSML 192 (500)
T ss_dssp EEEEESSCCC----TTC-----------------------------TTHHHHTTCCEEEECCSCCCHHHHHHHH
T ss_pred hhhccccCCC----ccc-----------------------------cHHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 6888885322 111 56899999988899999886 5555554
No 95
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.55 E-value=1.7e-14 Score=155.72 Aligned_cols=158 Identities=20% Similarity=0.363 Sum_probs=114.2
Q ss_pred ccccccHHHHHHHHHHHHHh--------hcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeecccccc
Q 003088 629 KRVIGQDEAVAAISRAVKRS--------RVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYME 700 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~~--------~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~ 700 (849)
+.|+|++++++.+...+... ..|... ..++||+||||||||++|+++|..+ +.+++.++++++..
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~----~~~vLL~Gp~GtGKT~la~ala~~~---~~~~i~v~~~~l~~ 87 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTP----SKGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPELLT 87 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCC----CSEEEEECSSSSSHHHHHHHHHHHT---TCEEEEECHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCC----CceEEEECCCCcCHHHHHHHHHHHh---CCCEEEEEhHHHHh
Confidence 56999999999998888652 223332 2359999999999999999999986 57899999887653
Q ss_pred ccccccccCCCCCccccccCcchhHHHHhCCCeEEEEeCccccCHH--------------HHHHHHHHhhcCeeecCCCc
Q 003088 701 RHTVSKLIGSPPGYVGYEEGGLLTEAIRRRPFTLLLLDEIEKAHPD--------------IFNILLQVFEDGHLTDSHGR 766 (849)
Q Consensus 701 ~~~~~~l~g~~~g~vg~~~~~~l~~~i~~~~~~vl~lDEid~l~~~--------------~~~~Ll~~le~g~~~~~~g~ 766 (849)
.++|..... ...+........++||||||||.+.+. +++.|+..|+.-.
T Consensus 88 -----~~~g~~~~~-----~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~------- 150 (301)
T 3cf0_A 88 -----MWFGESEAN-----VREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS------- 150 (301)
T ss_dssp -----HHHTTCTTH-----HHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSC-------
T ss_pred -----hhcCchHHH-----HHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhccc-------
Confidence 233321110 012233334455699999999987543 5789999998521
Q ss_pred eeecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhh--ccccEEEcCCCCHHHHc
Q 003088 767 RVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLN--RIDEVVVFRSLEKAQVC 844 (849)
Q Consensus 767 ~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~--R~d~~i~f~pl~~~~~~ 844 (849)
...+++||+|||.... +++.++. ||+..+.|++++.++..
T Consensus 151 --~~~~v~vi~atn~~~~------------------------------------ld~al~r~gRf~~~i~i~~p~~~~r~ 192 (301)
T 3cf0_A 151 --TKKNVFIIGATNRPDI------------------------------------IDPAILRPGRLDQLIYIPLPDEKSRV 192 (301)
T ss_dssp --TTSSEEEEEEESCGGG------------------------------------SCGGGGSTTSSCEEEECCCCCHHHHH
T ss_pred --CCCCEEEEEecCCccc------------------------------------cChHHhcCCccceEEecCCcCHHHHH
Confidence 1247899999997421 6778887 99999999999998887
Q ss_pred cccC
Q 003088 845 QLPL 848 (849)
Q Consensus 845 ~I~~ 848 (849)
+|++
T Consensus 193 ~il~ 196 (301)
T 3cf0_A 193 AILK 196 (301)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7753
No 96
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.55 E-value=1.6e-14 Score=159.52 Aligned_cols=161 Identities=20% Similarity=0.287 Sum_probs=115.2
Q ss_pred ccccccHHHHHHHHHHHHHhhc---CCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccc
Q 003088 629 KRVIGQDEAVAAISRAVKRSRV---GLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVS 705 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~~~~---g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~ 705 (849)
+.|+|++.+++.|...+..... -.....+|..++||+||||||||++|+++|+.+ +.+|+.++++++...
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~---~~~~~~v~~~~l~~~---- 123 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSSSDLVSK---- 123 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH---TCEEEEEEHHHHHSC----
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCCEEEeeHHHHhhh----
Confidence 6799999999999888754310 001112334469999999999999999999997 568999998876432
Q ss_pred cccCCCCCccccccC--cchhHHHHhCCCeEEEEeCccccCH-----------HHHHHHHHHhhcCeeecCCCceeecCC
Q 003088 706 KLIGSPPGYVGYEEG--GLLTEAIRRRPFTLLLLDEIEKAHP-----------DIFNILLQVFEDGHLTDSHGRRVSFKN 772 (849)
Q Consensus 706 ~l~g~~~g~vg~~~~--~~l~~~i~~~~~~vl~lDEid~l~~-----------~~~~~Ll~~le~g~~~~~~g~~~~~~~ 772 (849)
|+|..+. ..+....+...++||||||||.+.+ .+++.|+..|+.-. ....+
T Consensus 124 --------~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~--------~~~~~ 187 (355)
T 2qp9_X 124 --------WMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVG--------NDSQG 187 (355)
T ss_dssp --------C---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC-----------CC
T ss_pred --------hcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhccc--------ccCCC
Confidence 3333221 1233334455679999999999874 46889999997521 01247
Q ss_pred eEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHHHccccC
Q 003088 773 ALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQLPL 848 (849)
Q Consensus 773 ~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~I~~ 848 (849)
++||++||... .+++.+++||+..+.+++++.++..+|++
T Consensus 188 v~vI~atn~~~------------------------------------~ld~al~rRf~~~i~i~~P~~~~r~~il~ 227 (355)
T 2qp9_X 188 VLVLGATNIPW------------------------------------QLDSAIRRRFERRIYIPLPDLAARTTMFE 227 (355)
T ss_dssp EEEEEEESCGG------------------------------------GSCHHHHHTCCEEEECCCCCHHHHHHHHH
T ss_pred eEEEeecCCcc------------------------------------cCCHHHHcccCEEEEeCCcCHHHHHHHHH
Confidence 89999999732 17899999999999999999998887763
No 97
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.54 E-value=5.3e-14 Score=145.92 Aligned_cols=199 Identities=13% Similarity=0.096 Sum_probs=133.2
Q ss_pred HHHhh-cCCCCcccc---HHHHHHHHHHHhcCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhh
Q 003088 282 ARASE-ELIDPVIGR---ETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLL 357 (849)
Q Consensus 282 ~~~~~-~~l~~iiG~---~~~i~~l~~~l~~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~ 357 (849)
.++++ ..|++++|. +..++.+..+.......+++|+||||||||++|+.+++.+... +..++.+++..+
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~-------~~~~~~~~~~~~ 91 (242)
T 3bos_A 19 VHLPDDETFTSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANEL-------ERRSFYIPLGIH 91 (242)
T ss_dssp CCCCTTCSTTTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHT-------TCCEEEEEGGGG
T ss_pred CCCCCCCChhhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHc-------CCeEEEEEHHHH
Confidence 33444 467888863 4677777777776677899999999999999999999998654 345666666554
Q ss_pred hccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCCCeEEEEccChHHHHH
Q 003088 358 MAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437 (849)
Q Consensus 358 ~~~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~~i~vI~at~~~~~~~ 437 (849)
..... ..++.+ .++.+|||||++.+.... .....+...+....+.+.+.+|++++... ..
T Consensus 92 ~~~~~----------~~~~~~--~~~~vliiDe~~~~~~~~-------~~~~~l~~~l~~~~~~~~~~ii~~~~~~~-~~ 151 (242)
T 3bos_A 92 ASIST----------ALLEGL--EQFDLICIDDVDAVAGHP-------LWEEAIFDLYNRVAEQKRGSLIVSASASP-ME 151 (242)
T ss_dssp GGSCG----------GGGTTG--GGSSEEEEETGGGGTTCH-------HHHHHHHHHHHHHHHHCSCEEEEEESSCT-TT
T ss_pred HHHHH----------HHHHhc--cCCCEEEEeccccccCCH-------HHHHHHHHHHHHHHHcCCCeEEEEcCCCH-HH
Confidence 42211 111111 335799999999993210 00222334444445556664555544321 01
Q ss_pred HhhccHHHHhcc---ccEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhcccccCcchhhHHHHHHHHh
Q 003088 438 QFEKDKALARRF---QPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAG 514 (849)
Q Consensus 438 ~~~~d~al~~Rf---~~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~~~r~~p~~ai~ll~~a~ 514 (849)
+...++.+.+|| ..+.+++|+.+++.+++...+. ..++.++++++..++..+.+. +..+..+++.++
T Consensus 152 ~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~l~~~~~g~------~r~l~~~l~~~~ 221 (242)
T 3bos_A 152 AGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAA----MRGLQLPEDVGRFLLNRMARD------LRTLFDVLDRLD 221 (242)
T ss_dssp TTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHH----HTTCCCCHHHHHHHHHHTTTC------HHHHHHHHHHHH
T ss_pred HHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHccCC------HHHHHHHHHHHH
Confidence 123458999999 6899999999999999988776 457889999999988877653 346677777776
Q ss_pred hHH
Q 003088 515 SRA 517 (849)
Q Consensus 515 ~~~ 517 (849)
..+
T Consensus 222 ~~a 224 (242)
T 3bos_A 222 KAS 224 (242)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 98
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.54 E-value=1.2e-13 Score=154.16 Aligned_cols=212 Identities=23% Similarity=0.256 Sum_probs=131.6
Q ss_pred CccccHHHHHHHHHHHh------------------------------cCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCC
Q 003088 291 PVIGRETEIQRIIQILC------------------------------RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEV 340 (849)
Q Consensus 291 ~iiG~~~~i~~l~~~l~------------------------------~~~~~niLL~GppGtGKT~la~~la~~l~~~~~ 340 (849)
.++|+++.++.+...+. .....++||+||||||||++|+++|+.+
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l----- 96 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHL----- 96 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHT-----
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHh-----
Confidence 58999999988887662 1135689999999999999999999988
Q ss_pred CccccCCeEEEeehhhhhccccccch-HHHHHHHHHHHH----HhcCCeEEEEcCcchhhhCCCCCC-CCCCccHHHHHH
Q 003088 341 PVFLLSKRIMSLDMGLLMAGAKERGE-LEARVTTLISEI----QKSGDVILFIDEVHTLIGSGTVGR-GNKGTGLDISNL 414 (849)
Q Consensus 341 p~~~~~~~~~~l~~~~~~~~~~~~g~-~e~~l~~l~~~~----~~~~~~ILfIDEi~~l~~~~~~~~-~~~~~~~~~~~~ 414 (849)
+.+++.+++..+... .+.|. .+..+..++... ....++||||||+|.+...+.... ........+++.
T Consensus 97 -----~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~ 170 (376)
T 1um8_A 97 -----DIPIAISDATSLTEA-GYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQA 170 (376)
T ss_dssp -----TCCEEEEEGGGCC---------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHH
T ss_pred -----CCCEEEecchhhhhc-CcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHH
Confidence 566777777665321 12222 233344444332 234568999999999975422110 000122347888
Q ss_pred HhhhhcCC-----------------------CeEEEEccChHHHHH----------------------------------
Q 003088 415 LKPSLGRG-----------------------ELQCIASTTQDEHRT---------------------------------- 437 (849)
Q Consensus 415 L~~~le~~-----------------------~i~vI~at~~~~~~~---------------------------------- 437 (849)
|+.+++.+ ++.+|+++|......
T Consensus 171 Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 250 (376)
T 1um8_A 171 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHD 250 (376)
T ss_dssp HHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHH
T ss_pred HHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHH
Confidence 88888743 347777776321111
Q ss_pred --HhhccHHHHhccc-cEEecCCCHHHHHHHHH----HHHHHHHh-----hcCCccCHHHHHHHHHhhhcccccCcchhh
Q 003088 438 --QFEKDKALARRFQ-PVLISEPSQEDAVRILL----GLREKYEA-----HHNCKFTLEAINAAVHLSARYISDRYLPDK 505 (849)
Q Consensus 438 --~~~~d~al~~Rf~-~i~~~~ps~~e~~~iL~----~~~~~~~~-----~~~~~i~~~~l~~~a~ls~~~~~~r~~p~~ 505 (849)
...+.+.|.+||. .+.|++++.++...|+. .+..+|.. ..++.++++++..++..+.. ...-...
T Consensus 251 l~~~~~~p~l~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~---~~~~~R~ 327 (376)
T 1um8_A 251 LVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALE---RKTGARG 327 (376)
T ss_dssp HHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHH---TTCTGGG
T ss_pred HhhcCCChHHhcCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcc---cccCcHH
Confidence 2245799999995 79999999999999997 34443332 23567999999988876531 0011234
Q ss_pred HHHHHHHHhhH
Q 003088 506 AIDLVDEAGSR 516 (849)
Q Consensus 506 ai~ll~~a~~~ 516 (849)
+..+++.++..
T Consensus 328 L~~~le~~~~~ 338 (376)
T 1um8_A 328 LRAIIEDFCLD 338 (376)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555544
No 99
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.54 E-value=3.4e-14 Score=154.85 Aligned_cols=157 Identities=19% Similarity=0.245 Sum_probs=118.4
Q ss_pred ccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeecccccccccccccc
Q 003088 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLI 708 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~ 708 (849)
+.++|++.++..+...+.....+. .+..++||+||||||||++|+++++.+ +.+++.++|+.+...
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~~----~~~~~vll~G~~GtGKT~la~~i~~~~---~~~~~~~~~~~~~~~------- 77 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKARK----EPLEHLLLFGPPGLGKTTLAHVIAHEL---GVNLRVTSGPAIEKP------- 77 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHC----SCCCCCEEECCTTCCCHHHHHHHHHHH---TCCEEEECTTTCCSH-------
T ss_pred HHhhCHHHHHHHHHHHHHHHHccC----CCCCcEEEECCCCCCHHHHHHHHHHHh---CCCEEEEeccccCCh-------
Confidence 569999999999988887643211 112359999999999999999999987 457888887655321
Q ss_pred CCCCCccccccCcchhHHHHh--CCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCc-------eeecCCeEEEEec
Q 003088 709 GSPPGYVGYEEGGLLTEAIRR--RPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGR-------RVSFKNALIVMTS 779 (849)
Q Consensus 709 g~~~g~vg~~~~~~l~~~i~~--~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~-------~~~~~~~~iI~ts 779 (849)
+.+.+.+.. +.+++||||||+.+++..++.|++.++++.+..-.+. .....++++|++|
T Consensus 78 ------------~~l~~~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t 145 (324)
T 1hqc_A 78 ------------GDLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGAT 145 (324)
T ss_dssp ------------HHHHHHHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEE
T ss_pred ------------HHHHHHHHHhccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeC
Confidence 123334443 4578999999999999999999999999876532211 1233578999999
Q ss_pred CCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHHHcccc
Q 003088 780 NVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQLP 847 (849)
Q Consensus 780 n~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~I~ 847 (849)
|... .|+++|++||+.++.|+|++.+++.+++
T Consensus 146 ~~~~------------------------------------~~~~~l~~R~~~~i~l~~~~~~e~~~~l 177 (324)
T 1hqc_A 146 TRPG------------------------------------LITAPLLSRFGIVEHLEYYTPEELAQGV 177 (324)
T ss_dssp SCCS------------------------------------SCSCSTTTTCSCEEECCCCCHHHHHHHH
T ss_pred CCcc------------------------------------cCCHHHHhcccEEEecCCCCHHHHHHHH
Confidence 9641 1778899999889999999999887765
No 100
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.53 E-value=1.9e-14 Score=167.70 Aligned_cols=179 Identities=19% Similarity=0.237 Sum_probs=117.2
Q ss_pred CCccccHHHHHHHHHHHhc------CCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhcc---
Q 003088 290 DPVIGRETEIQRIIQILCR------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAG--- 360 (849)
Q Consensus 290 ~~iiG~~~~i~~l~~~l~~------~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~~--- 360 (849)
++++|.++..+.+.+.+.. ....+++|+||||||||++|++||..+ +..+..++++.+...
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l----------~~~~~~i~~~~~~~~~~~ 150 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL----------GRKFVRISLGGVRDESEI 150 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH----------TCEEEEECCCC-------
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc----------CCCeEEEEecccchhhhh
Confidence 3589999888887664421 235578999999999999999999998 344555544332211
Q ss_pred ----ccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcC---------------
Q 003088 361 ----AKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--------------- 421 (849)
Q Consensus 361 ----~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~--------------- 421 (849)
..+.|.....+...+..+...+ .||||||+|.+.+.. ..+.++.|+..++.
T Consensus 151 ~g~~~~~ig~~~~~~~~~~~~a~~~~-~vl~lDEid~l~~~~---------~~~~~~~LL~~ld~~~~~~~~~~~~~~~~ 220 (543)
T 3m6a_A 151 RGHRRTYVGAMPGRIIQGMKKAGKLN-PVFLLDEIDKMSSDF---------RGDPSSAMLEVLDPEQNSSFSDHYIEETF 220 (543)
T ss_dssp -------------CHHHHHHTTCSSS-EEEEEEESSSCC------------------CCGGGTCTTTTTBCCCSSSCCCC
T ss_pred hhHHHHHhccCchHHHHHHHHhhccC-CEEEEhhhhhhhhhh---------ccCHHHHHHHHHhhhhcceeecccCCeee
Confidence 1334555555555555544333 499999999995421 12345666666642
Q ss_pred --CCeEEEEccChHHHHHHhhccHHHHhccccEEecCCCHHHHHHHHHHHH-HHHHhhc-----CCccCHHHHHHHHHhh
Q 003088 422 --GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLR-EKYEAHH-----NCKFTLEAINAAVHLS 493 (849)
Q Consensus 422 --~~i~vI~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL~~~~-~~~~~~~-----~~~i~~~~l~~~a~ls 493 (849)
.++++|+|||... .++++|++||..|.|+.|+.+++.+|+...+ .++...+ ++.++++++..++...
T Consensus 221 ~~~~v~iI~ttN~~~-----~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~ 295 (543)
T 3m6a_A 221 DLSKVLFIATANNLA-----TIPGPLRDRMEIINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYY 295 (543)
T ss_dssp BCSSCEEEEECSSTT-----TSCHHHHHHEEEEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHH
T ss_pred cccceEEEeccCccc-----cCCHHHHhhcceeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhC
Confidence 4578999999876 8899999999999999999999999998854 3222222 4578999988877633
No 101
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.52 E-value=3.7e-14 Score=150.14 Aligned_cols=183 Identities=17% Similarity=0.215 Sum_probs=112.5
Q ss_pred CCCCccccHHHHHHHHHHHhc--CCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhc------
Q 003088 288 LIDPVIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA------ 359 (849)
Q Consensus 288 ~l~~iiG~~~~i~~l~~~l~~--~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~------ 359 (849)
+|++++|++..++.+.+.+.. ....+++|+||||||||++|+++++.+... +.+++.++++.+..
T Consensus 4 ~f~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~-------~~~~~~v~~~~~~~~~~~~~ 76 (265)
T 2bjv_A 4 YKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRW-------QGPFISLNCAALNENLLDSE 76 (265)
T ss_dssp ------CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTT-------TSCEEEEEGGGSCHHHHHHH
T ss_pred ccccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCcc-------CCCeEEEecCCCChhHHHHH
Confidence 578899999999988876643 456799999999999999999999877433 35567777665421
Q ss_pred --cccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCC-------------Ce
Q 003088 360 --GAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-------------EL 424 (849)
Q Consensus 360 --~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~-------------~i 424 (849)
|. ..|.+..........+....+++|||||++.+ ..+.++.|..+++.+ ++
T Consensus 77 l~g~-~~~~~~g~~~~~~~~l~~a~~~~l~lDEi~~l-------------~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~ 142 (265)
T 2bjv_A 77 LFGH-EAGAFTGAQKRHPGRFERADGGTLFLDELATA-------------PMMVQEKLLRVIEYGELERVGGSQPLQVNV 142 (265)
T ss_dssp HHCC-C---------CCCCHHHHTTTSEEEEESGGGS-------------CHHHHHHHHHHHHHCEECCCCC--CEECCC
T ss_pred hcCC-cccccccccccccchhhhcCCcEEEEechHhc-------------CHHHHHHHHHHHHhCCeecCCCcccccCCe
Confidence 10 01111111000000112234569999999999 345677777777643 57
Q ss_pred EEEEccChHHHH--HHhhccHHHHhcccc--EEecCCCH--HHHHHHHHHHHHHHHhhcCC----ccCHHHHHHHHH
Q 003088 425 QCIASTTQDEHR--TQFEKDKALARRFQP--VLISEPSQ--EDAVRILLGLREKYEAHHNC----KFTLEAINAAVH 491 (849)
Q Consensus 425 ~vI~at~~~~~~--~~~~~d~al~~Rf~~--i~~~~ps~--~e~~~iL~~~~~~~~~~~~~----~i~~~~l~~~a~ 491 (849)
++|++||..... ..-.+.+.|.+||.. |.+++++. ++...+++.+.+++....+. .++++++..+..
T Consensus 143 ~iI~atn~~~~~~~~~~~~~~~L~~Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~L~~ 219 (265)
T 2bjv_A 143 RLVCATNADLPAMVNEGTFRADLLDALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLN 219 (265)
T ss_dssp EEEEEESSCHHHHHHHTSSCHHHHHHHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHHHHH
T ss_pred EEEEecCcCHHHHHHcCCccHHHHHhhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHHHHh
Confidence 899999975311 111356899999975 45555443 55666666665555444443 689999887764
No 102
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.52 E-value=4.2e-14 Score=158.40 Aligned_cols=162 Identities=21% Similarity=0.273 Sum_probs=113.7
Q ss_pred ccccccHHHHHHHHHHHHHhhcCC---CCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccc
Q 003088 629 KRVIGQDEAVAAISRAVKRSRVGL---KDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVS 705 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~~~~g~---~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~ 705 (849)
+.|+|++.+++.|...+....... .....+..++||+||||||||++|+++++.+ +.+|+.++|+++...
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~---~~~~~~v~~~~l~~~---- 187 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES---NATFFNISAASLTSK---- 187 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT---TCEEEEECSCCC-------
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh---cCcEEEeeHHHhhcc----
Confidence 569999999999988886532210 0011233469999999999999999999985 678999999876542
Q ss_pred cccCCCCCccccccC--cchhHHHHhCCCeEEEEeCcccc-----------CHHHHHHHHHHhhcCeeecCCCceeecCC
Q 003088 706 KLIGSPPGYVGYEEG--GLLTEAIRRRPFTLLLLDEIEKA-----------HPDIFNILLQVFEDGHLTDSHGRRVSFKN 772 (849)
Q Consensus 706 ~l~g~~~g~vg~~~~--~~l~~~i~~~~~~vl~lDEid~l-----------~~~~~~~Ll~~le~g~~~~~~g~~~~~~~ 772 (849)
|+|..+. ..+.+.......+||||||||.+ ...+++.|+..|+...- ....+
T Consensus 188 --------~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~-------~~~~~ 252 (389)
T 3vfd_A 188 --------YVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQS-------AGDDR 252 (389)
T ss_dssp ------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC------------C
T ss_pred --------ccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccc-------cCCCC
Confidence 3333221 12333444566799999999988 45688899999985221 01247
Q ss_pred eEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHHHccccC
Q 003088 773 ALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQLPL 848 (849)
Q Consensus 773 ~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~I~~ 848 (849)
++||+|||... .+++.+++||+..+.|++++.++..+|++
T Consensus 253 v~vI~atn~~~------------------------------------~l~~~l~~R~~~~i~i~~p~~~~r~~il~ 292 (389)
T 3vfd_A 253 VLVMGATNRPQ------------------------------------ELDEAVLRRFIKRVYVSLPNEETRLLLLK 292 (389)
T ss_dssp EEEEEEESCGG------------------------------------GCCHHHHTTCCEEEECCCCCHHHHHHHHH
T ss_pred EEEEEecCCch------------------------------------hcCHHHHcCcceEEEcCCcCHHHHHHHHH
Confidence 89999999631 17889999999899999999988877763
No 103
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.52 E-value=6e-14 Score=156.39 Aligned_cols=212 Identities=19% Similarity=0.207 Sum_probs=141.0
Q ss_pred CCccccHHHHHHHHHHHhc----CCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhc------
Q 003088 290 DPVIGRETEIQRIIQILCR----RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA------ 359 (849)
Q Consensus 290 ~~iiG~~~~i~~l~~~l~~----~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~------ 359 (849)
+.++|++++++.+..++.. ....+++|+||||||||++++.+++.+..... ..-.+..++.+++.....
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~ 97 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARAS-SLGVLVKPIYVNARHRETPYRVAS 97 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHH-HHTCCEEEEEEETTTSCSHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHh-ccCCCeEEEEEECCcCCCHHHHHH
Confidence 6899999999999998743 45678999999999999999999998843200 000134556666433110
Q ss_pred ------c--ccccch-HHHHHHHHHHHHHhc-CCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhc----CCCeE
Q 003088 360 ------G--AKERGE-LEARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG----RGELQ 425 (849)
Q Consensus 360 ------~--~~~~g~-~e~~l~~l~~~~~~~-~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le----~~~i~ 425 (849)
+ ....|. ....+..++..+... ++.||||||+|.+.... ...++...+...++ ..++.
T Consensus 98 ~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~--------~~~~~l~~l~~~~~~~~~~~~~~ 169 (387)
T 2v1u_A 98 AIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP--------GGQDLLYRITRINQELGDRVWVS 169 (387)
T ss_dssp HHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST--------THHHHHHHHHHGGGCC-----CE
T ss_pred HHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC--------CCChHHHhHhhchhhcCCCceEE
Confidence 0 001111 333344555555443 47899999999995321 02333444444444 56789
Q ss_pred EEEccChHHHHHHhhccHHHHhcc--ccEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhcccccCcch
Q 003088 426 CIASTTQDEHRTQFEKDKALARRF--QPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLP 503 (849)
Q Consensus 426 vI~at~~~~~~~~~~~d~al~~Rf--~~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~~~r~~p 503 (849)
+|++|+..++.. .+++.+.+|| ..+.|++|+.++..+++...+... ..+..++++++..++..+.+. ...|
T Consensus 170 ~I~~t~~~~~~~--~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~--~~~~~~~~~~~~~l~~~~~~~---~G~~ 242 (387)
T 2v1u_A 170 LVGITNSLGFVE--NLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEA--FNPGVLDPDVVPLCAALAARE---HGDA 242 (387)
T ss_dssp EEEECSCSTTSS--SSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHH--BCTTTBCSSHHHHHHHHHHSS---SCCH
T ss_pred EEEEECCCchHh--hhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhh--ccCCCCCHHHHHHHHHHHHHh---ccCH
Confidence 999998874322 6789999999 469999999999999998877532 245678999999998888732 1235
Q ss_pred hhHHHHHHHHhhHH
Q 003088 504 DKAIDLVDEAGSRA 517 (849)
Q Consensus 504 ~~ai~ll~~a~~~~ 517 (849)
..+++++..++..+
T Consensus 243 r~~~~~l~~a~~~a 256 (387)
T 2v1u_A 243 RRALDLLRVAGEIA 256 (387)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 67888888876544
No 104
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.52 E-value=5.7e-14 Score=159.79 Aligned_cols=162 Identities=20% Similarity=0.273 Sum_probs=113.1
Q ss_pred ccccccHHHHHHHHHHHHHhhc---CCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccc
Q 003088 629 KRVIGQDEAVAAISRAVKRSRV---GLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVS 705 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~~~~---g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~ 705 (849)
+.|+|++.+++.|...+..... -+.....|..++||+||||||||++|+++|+.+ .+.+|+.++++++...
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~--~~~~~~~v~~~~l~~~---- 207 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA--NNSTFFSISSSDLVSK---- 207 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC--CSSEEEEECCC---------
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc--CCCCEEEEeHHHHHhh----
Confidence 5699999999999888754211 000002233569999999999999999999986 3567999998876432
Q ss_pred cccCCCCCccccccC--cchhHHHHhCCCeEEEEeCccccC-----------HHHHHHHHHHhhcCeeecCCCceeecCC
Q 003088 706 KLIGSPPGYVGYEEG--GLLTEAIRRRPFTLLLLDEIEKAH-----------PDIFNILLQVFEDGHLTDSHGRRVSFKN 772 (849)
Q Consensus 706 ~l~g~~~g~vg~~~~--~~l~~~i~~~~~~vl~lDEid~l~-----------~~~~~~Ll~~le~g~~~~~~g~~~~~~~ 772 (849)
|+|..+. ..+....+...++||||||||.+. ..+++.|+..|+... ....+
T Consensus 208 --------~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~--------~~~~~ 271 (444)
T 2zan_A 208 --------WLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVG--------VDNDG 271 (444)
T ss_dssp ------------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSS--------CCCSS
T ss_pred --------hcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcc--------cCCCC
Confidence 3343332 123344455667999999999883 358888998887621 12347
Q ss_pred eEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHHHccccC
Q 003088 773 ALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQLPL 848 (849)
Q Consensus 773 ~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~I~~ 848 (849)
++||+|||... .++|.|++||+..+.+++++.++...|++
T Consensus 272 v~vI~atn~~~------------------------------------~ld~al~rRf~~~i~i~~P~~~~r~~il~ 311 (444)
T 2zan_A 272 ILVLGATNIPW------------------------------------VLDSAIRRRFEKRIYIPLPEAHARAAMFR 311 (444)
T ss_dssp CEEEEEESCGG------------------------------------GSCHHHHTTCCEEEECCCCCHHHHHHHHH
T ss_pred EEEEecCCCcc------------------------------------ccCHHHHhhcceEEEeCCcCHHHHHHHHH
Confidence 89999999741 17899999999999999999988887763
No 105
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.52 E-value=9.4e-14 Score=153.00 Aligned_cols=212 Identities=19% Similarity=0.219 Sum_probs=130.5
Q ss_pred hhcCCCCccccHHHHHHHHHHHhcCCCCCCeEeCCCCChHHHHHHHHHHHhhhC----CCCcccc---------------
Q 003088 285 SEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQA----EVPVFLL--------------- 345 (849)
Q Consensus 285 ~~~~l~~iiG~~~~i~~l~~~l~~~~~~niLL~GppGtGKT~la~~la~~l~~~----~~p~~~~--------------- 345 (849)
++..|++++|+++.++.+...+......++||+||||||||++|+++++.+... ..+....
T Consensus 19 ~~~~f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (350)
T 1g8p_A 19 PVFPFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLSTN 98 (350)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTCCCSCCC
T ss_pred CCCCchhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCccccccccccccccccccccchhhhhccc
Confidence 345678899999977765555555556789999999999999999999987421 1111000
Q ss_pred ----CCeEEEeehhhh---hccccccchHHHHHHHHH-----HHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHH
Q 003088 346 ----SKRIMSLDMGLL---MAGAKERGELEARVTTLI-----SEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISN 413 (849)
Q Consensus 346 ----~~~~~~l~~~~~---~~~~~~~g~~e~~l~~l~-----~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~ 413 (849)
...++.+..+.. +.|.. .+...+..-. ..+....++||||||+|.+ ..+.++
T Consensus 99 ~~~~~~~~~~~~~~~~~~~l~g~~---~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l-------------~~~~~~ 162 (350)
T 1g8p_A 99 VIRKPTPVVDLPLGVSEDRVVGAL---DIERAISKGEKAFEPGLLARANRGYLYIDECNLL-------------EDHIVD 162 (350)
T ss_dssp EEEECCCEEEECTTCCHHHHHCEE---CHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGS-------------CHHHHH
T ss_pred cccCCCcccccCCCcchhhheeec---hhhhhhcCCceeecCceeeecCCCEEEEeChhhC-------------CHHHHH
Confidence 011222111100 00000 0011000000 0011123679999999999 345677
Q ss_pred HHhhhhcCC---------------CeEEEEccChHHHHHHhhccHHHHhcccc-EEecCC-CHHHHHHHHHHHHHH----
Q 003088 414 LLKPSLGRG---------------ELQCIASTTQDEHRTQFEKDKALARRFQP-VLISEP-SQEDAVRILLGLREK---- 472 (849)
Q Consensus 414 ~L~~~le~~---------------~i~vI~at~~~~~~~~~~~d~al~~Rf~~-i~~~~p-s~~e~~~iL~~~~~~---- 472 (849)
.|+..++.+ .+++|++||..+ ..++++|.+||.. +.+++| +.+++.+|+......
T Consensus 163 ~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~----~~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~~~~~~~~~ 238 (350)
T 1g8p_A 163 LLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEE----GDLRPQLLDRFGLSVEVLSPRDVETRVEVIRRRDTYDADP 238 (350)
T ss_dssp HHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCS----CCCCHHHHTTCSEEEECCCCCSHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCC----CCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHHHhcccCc
Confidence 888877754 688999999743 2688999999985 999999 677777888663110
Q ss_pred ---------------------HHhhcCCccCHHHHHHHHHhhhcccccCcchhhHHHHHHHHhhHHH
Q 003088 473 ---------------------YEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAH 518 (849)
Q Consensus 473 ---------------------~~~~~~~~i~~~~l~~~a~ls~~~~~~r~~p~~ai~ll~~a~~~~~ 518 (849)
.....++.++++++..++.++.+.-. .-+..++.+++.|...+.
T Consensus 239 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~--~~~R~~~~ll~~a~~~A~ 303 (350)
T 1g8p_A 239 KAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALGS--DGLRGELTLLRSARALAA 303 (350)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSS--CSHHHHHHHHHHHHHHHH
T ss_pred hhhccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCC--CCccHHHHHHHHHHHHHH
Confidence 01234568899999888887765321 124566777777665554
No 106
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.51 E-value=2.8e-13 Score=150.79 Aligned_cols=208 Identities=19% Similarity=0.247 Sum_probs=141.6
Q ss_pred CCccccHHHHHHHHHHHh----cCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhc------
Q 003088 290 DPVIGRETEIQRIIQILC----RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA------ 359 (849)
Q Consensus 290 ~~iiG~~~~i~~l~~~l~----~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~------ 359 (849)
++++|++++++.+.+.+. .....+++|+||+|||||++++.+++.+...... +..++.+++.....
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~~ 95 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLG----KFKHVYINTRQIDTPYRVLA 95 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCS----SCEEEEEEHHHHCSHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcC----CceEEEEECCCCCCHHHHHH
Confidence 679999999999998876 3456789999999999999999999987542100 34556666443210
Q ss_pred ------c--ccccc-hHHHHHHHHHHHHHhcC-CeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhh---cCCCeEE
Q 003088 360 ------G--AKERG-ELEARVTTLISEIQKSG-DVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL---GRGELQC 426 (849)
Q Consensus 360 ------~--~~~~g-~~e~~l~~l~~~~~~~~-~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~l---e~~~i~v 426 (849)
+ ....+ .....+..+.+.+...+ +.||||||+|.+.... ..++...|...+ ...++.+
T Consensus 96 ~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~---------~~~~l~~l~~~~~~~~~~~~~~ 166 (386)
T 2qby_A 96 DLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKY---------NDDILYKLSRINSEVNKSKISF 166 (386)
T ss_dssp HHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSS---------CSTHHHHHHHHHHSCCC--EEE
T ss_pred HHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccC---------cCHHHHHHhhchhhcCCCeEEE
Confidence 0 00011 13334455555555443 8899999999996532 123444555555 4567899
Q ss_pred EEccChHHHHHHhhccHHHHhcc--ccEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhcccccCcchh
Q 003088 427 IASTTQDEHRTQFEKDKALARRF--QPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPD 504 (849)
Q Consensus 427 I~at~~~~~~~~~~~d~al~~Rf--~~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~~~r~~p~ 504 (849)
|++|+..++.. .+++.+.+|| ..+.+++++.++..+++...+... .....++++++..++..+... ...|.
T Consensus 167 I~~~~~~~~~~--~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~--~~~~~~~~~~~~~l~~~~~~~---~G~~r 239 (386)
T 2qby_A 167 IGITNDVKFVD--LLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMA--FKPGVLPDNVIKLCAALAARE---HGDAR 239 (386)
T ss_dssp EEEESCGGGGG--GCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHH--BCSSCSCHHHHHHHHHHHHHT---TCCHH
T ss_pred EEEECCCChHh--hhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhh--ccCCCCCHHHHHHHHHHHHHh---cCCHH
Confidence 99998775332 5678899999 479999999999999998866532 234678999999988887621 12356
Q ss_pred hHHHHHHHHhhHH
Q 003088 505 KAIDLVDEAGSRA 517 (849)
Q Consensus 505 ~ai~ll~~a~~~~ 517 (849)
.++++++.++..+
T Consensus 240 ~~~~ll~~a~~~a 252 (386)
T 2qby_A 240 RALDLLRVSGEIA 252 (386)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7788888776544
No 107
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.51 E-value=5e-13 Score=149.20 Aligned_cols=205 Identities=16% Similarity=0.173 Sum_probs=140.3
Q ss_pred CCccccHHHHHHHHHHHhc----CCCC--CCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhc----
Q 003088 290 DPVIGRETEIQRIIQILCR----RTKN--NPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA---- 359 (849)
Q Consensus 290 ~~iiG~~~~i~~l~~~l~~----~~~~--niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~---- 359 (849)
++++|++++++.+...+.. .... +++|+||||||||++++.+++.+.... +..++.+++.....
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~------~~~~~~i~~~~~~~~~~~ 90 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKT------TARFVYINGFIYRNFTAI 90 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC------CCEEEEEETTTCCSHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc------CeeEEEEeCccCCCHHHH
Confidence 6799999999999888755 3334 799999999999999999999885431 34555555432110
Q ss_pred --------cc--cccc-hHHHHHHHHHHHHHh-cCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcC------
Q 003088 360 --------GA--KERG-ELEARVTTLISEIQK-SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR------ 421 (849)
Q Consensus 360 --------~~--~~~g-~~e~~l~~l~~~~~~-~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~------ 421 (849)
+. ...+ .....+..+...+.. .++.||||||+|.+ ..+.++.|...++.
T Consensus 91 ~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l-------------~~~~~~~L~~~~~~~~~~~~ 157 (389)
T 1fnn_A 91 IGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL-------------APDILSTFIRLGQEADKLGA 157 (389)
T ss_dssp HHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS-------------CHHHHHHHHHHTTCHHHHSS
T ss_pred HHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc-------------chHHHHHHHHHHHhCCCCCc
Confidence 00 0011 122223333333333 45789999999999 24556666666642
Q ss_pred CCeEEEEccChHHHHHHhhccHHHHhccc--cEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhcccc-
Q 003088 422 GELQCIASTTQDEHRTQFEKDKALARRFQ--PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS- 498 (849)
Q Consensus 422 ~~i~vI~at~~~~~~~~~~~d~al~~Rf~--~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~~- 498 (849)
.++.+|++|+..++.. .+++.+.+||. .+.|++++.++..+++...+... .....++++++..++..+.+...
T Consensus 158 ~~~~iI~~~~~~~~~~--~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~ 233 (389)
T 1fnn_A 158 FRIALVIVGHNDAVLN--NLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAG--LAEGSYSEDILQMIADITGAQTPL 233 (389)
T ss_dssp CCEEEEEEESSTHHHH--TSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHH--BCTTSSCHHHHHHHHHHHSBSSTT
T ss_pred CCEEEEEEECCchHHH--HhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhh--cCCCCCCHHHHHHHHHHHhhcccC
Confidence 5788999888775433 46889999997 59999999999999998876632 22347899999999998853310
Q ss_pred --cCcchhhHHHHHHHHhhHH
Q 003088 499 --DRYLPDKAIDLVDEAGSRA 517 (849)
Q Consensus 499 --~r~~p~~ai~ll~~a~~~~ 517 (849)
....|..+++++..++..+
T Consensus 234 ~~~~G~~r~~~~~l~~a~~~a 254 (389)
T 1fnn_A 234 DTNRGDARLAIDILYRSAYAA 254 (389)
T ss_dssp CTTSCCHHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHH
Confidence 0234567888888876554
No 108
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.51 E-value=8.1e-13 Score=175.02 Aligned_cols=359 Identities=14% Similarity=0.179 Sum_probs=195.2
Q ss_pred CCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcC
Q 003088 311 KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDE 390 (849)
Q Consensus 311 ~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDE 390 (849)
..+.++.||+|||||++++.+|+.+ +..++.++++.-+.. ..+..++..+... ++++++||
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~l----------g~~~v~~nc~e~ld~--------~~lg~~~~g~~~~-Gaw~~~DE 705 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNL----------GRVVVVFNCDDSFDY--------QVLSRLLVGITQI-GAWGCFDE 705 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTT----------TCCCEEEETTSSCCH--------HHHHHHHHHHHHH-TCEEEEET
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHh----------CCcEEEEECCCCCCh--------hHhhHHHHHHHhc-CCEeeehh
Confidence 3567899999999999999999998 777888877654321 2235555555544 37999999
Q ss_pred cchhhhCCCCCCCCCCccHHHHHHH-------hhhhc---------------CCCeEEEEccChHHHHHHhhccHHHHhc
Q 003088 391 VHTLIGSGTVGRGNKGTGLDISNLL-------KPSLG---------------RGELQCIASTTQDEHRTQFEKDKALARR 448 (849)
Q Consensus 391 i~~l~~~~~~~~~~~~~~~~~~~~L-------~~~le---------------~~~i~vI~at~~~~~~~~~~~d~al~~R 448 (849)
++.+ ..++...+ ...+. ...+.+++|.|+ .|....++.++|++|
T Consensus 706 ~nr~-------------~~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NP-gy~g~~eLP~~Lk~~ 771 (2695)
T 4akg_A 706 FNRL-------------DEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNP-GYNGRSELPENLKKS 771 (2695)
T ss_dssp TTSS-------------CHHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECC-CSSSSCCCCHHHHTT
T ss_pred hhhc-------------ChHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCC-CccCcccccHHHHhh
Confidence 9998 23333333 12221 133567788887 477677899999999
Q ss_pred cccEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHH---HHHHhhhccccc-Cc--ch-hhHHHHHHHHhhHHHHhh
Q 003088 449 FQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAIN---AAVHLSARYISD-RY--LP-DKAIDLVDEAGSRAHIEL 521 (849)
Q Consensus 449 f~~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~---~~a~ls~~~~~~-r~--~p-~~ai~ll~~a~~~~~~~~ 521 (849)
|..|.+..|+.+...+|+-.. .|+........ .+.+++..-... .. +. .....++..|+...+...
T Consensus 772 Fr~v~m~~Pd~~~i~ei~l~s-------~Gf~~a~~la~kiv~~~~l~~e~ls~q~hydfglRalksvL~~ag~lkr~~~ 844 (2695)
T 4akg_A 772 FREFSMKSPQSGTIAEMILQI-------MGFEDSKSLASKIVHFLELLSSKCSSMNHYHFGLRTLKGVLRNCSPLISEFG 844 (2695)
T ss_dssp EEEEECCCCCHHHHHHHHHHH-------HHCSSHHHHHHHHHHHHHHHHHHSCCCTTCCCSHHHHHHHHHHHHHHHHHSC
T ss_pred eEEEEeeCCCHHHHHHHHHHh-------cCCCchHHHHHHHHHHHHHHHHHhCcCCcccccHHHHHHHHHHHHHhhccCC
Confidence 999999999999888886321 12222222211 222222221111 11 11 122344444433222110
Q ss_pred hhchhhhhhhhcCCCCchHHHHHHHHHHhHHHHHhcccccchhhhccCCcchhHHhccCCCCCCCCCCCccCHhH---HH
Q 003088 522 FKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDD---IA 598 (849)
Q Consensus 522 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---i~ 598 (849)
.+...-++++.... + ..+..+| +.
T Consensus 845 ----------------~e~~~l~~al~~~~--------------l-----------------------pk~~~~D~~lf~ 871 (2695)
T 4akg_A 845 ----------------EGEKTVVESLKRVI--------------L-----------------------PSLGDTDELVFK 871 (2695)
T ss_dssp ----------------SSHHHHHHHHHHHT--------------G-----------------------GGCCHHHHHHHH
T ss_pred ----------------cHHHHHHHHHHHhc--------------c-----------------------ccCchhhHHHHH
Confidence 00001111111110 0 0111222 22
Q ss_pred HHHHhHh-CCCcccCCHHHHHHHHHHHHHH-hccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHH
Q 003088 599 AVASLWS-GIPVQQITADERMLLVGLEEQL-KKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELA 676 (849)
Q Consensus 599 ~~~~~~~-g~~~~~~~~~~~~~~~~l~~~l-~~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA 676 (849)
.+++... |+... ....+ ....+.+.+ ...+.-.+..+..+....+..... ..++++||||||||++.
T Consensus 872 ~li~dlFp~~~~~-~~~~~--l~~~i~~~~~~~~l~~~~~~~~K~~ql~e~~~~r--------~gvmlvGptgsGKTt~~ 940 (2695)
T 4akg_A 872 DELSKIFDSAGTP-LNSKA--IVQCLKDAGQRSGFSMSEEFLKKCMQFYYMQKTQ--------QALILVGKAGCGKTATW 940 (2695)
T ss_dssp HHHHHHCCCCSCC-SSSSH--HHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHC--------SEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCCCCC-CChHH--HHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHhc--------ceEEEECCCCCCHHHHH
Confidence 2233222 11111 01111 111122211 123344445555444433332211 13999999999999999
Q ss_pred HHHHHHhc---CCCCceeEeeccccccccccccccCCCCCccccccCcchhHHHHhC---------C-CeEEEEeCcccc
Q 003088 677 KSLAACYF---GSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRRR---------P-FTLLLLDEIEKA 743 (849)
Q Consensus 677 ~~la~~l~---~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~i~~~---------~-~~vl~lDEid~l 743 (849)
+.|++.+. +.......++...+ +...|+|.-....++=..|.+..++++. . +..|+|| .-+
T Consensus 941 ~~La~al~~l~~~~~~~~~inpk~~----t~~el~G~~d~~t~eW~DGils~~~R~~~~~~~~~~~~~~~WivfD--G~v 1014 (2695)
T 4akg_A 941 KTVIDAMAIFDGHANVVYVIDTKVL----TKESLYGSMLKATLEWRDGLFTSILRRVNDDITGTFKNSRIWVVFD--SDL 1014 (2695)
T ss_dssp HHHHHHHHHHTCCEEEEEEECTTTS----CHHHHTTEECTTTCCEECCSHHHHHHHHHTCCCSSCSSEEEEEEEC--SCC
T ss_pred HHHHHHHHHhcCCCceEEEeCCCCC----CHHHhcceecCCCCeEecChHHHHHHHHHhccccccCCCCeEEEEC--CCC
Confidence 99998763 22223344443222 3346777422111222246788877751 1 4589999 677
Q ss_pred CHHHHHHHHHHhhcCe-eecCCCceeecC-CeEEEEec
Q 003088 744 HPDIFNILLQVFEDGH-LTDSHGRRVSFK-NALIVMTS 779 (849)
Q Consensus 744 ~~~~~~~Ll~~le~g~-~~~~~g~~~~~~-~~~iI~ts 779 (849)
++...+.|-.+||+.+ ++-..|..+..+ ++.+|+-+
T Consensus 1015 D~~WIE~LNsVLDDNk~L~L~ngErI~l~~~~~llFEv 1052 (2695)
T 4akg_A 1015 DPEYVEAMNSVLDDNKILTLPNGERLPIPPNFRILFET 1052 (2695)
T ss_dssp CHHHHHTTHHHHSTTCEEECSSSCEEECCSSCEEEEEE
T ss_pred CHHHHHHHHHHhcCCCccccCCCCEEecCCCcEEEEEe
Confidence 8999999999998755 677778777765 88888744
No 109
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.51 E-value=2.7e-13 Score=151.30 Aligned_cols=216 Identities=18% Similarity=0.144 Sum_probs=143.1
Q ss_pred hHHHHhhcCCCCccccHHHHHHHHHHHhc----CCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCcccc-CCeEEEeeh
Q 003088 280 LTARASEELIDPVIGRETEIQRIIQILCR----RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLL-SKRIMSLDM 354 (849)
Q Consensus 280 l~~~~~~~~l~~iiG~~~~i~~l~~~l~~----~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~-~~~~~~l~~ 354 (849)
|...+.| ++++|++++++.+...+.. ....+++|+||||||||++|+.+++.+........-. +..++.+++
T Consensus 13 l~~~~~p---~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~ 89 (384)
T 2qby_B 13 IDPLSVF---KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNC 89 (384)
T ss_dssp TCHHHHC---SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEH
T ss_pred cCCccCC---CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEEC
Confidence 4445555 6899999999998877644 3456799999999999999999999875420000001 456677775
Q ss_pred hhhh-c-------------cc--cccch-HHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHH-HHHHh
Q 003088 355 GLLM-A-------------GA--KERGE-LEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDI-SNLLK 416 (849)
Q Consensus 355 ~~~~-~-------------~~--~~~g~-~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~-~~~L~ 416 (849)
.... . +. ...+. ....+..+...+...+ .||||||+|.+.... ..++ ...|.
T Consensus 90 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~-~vlilDEi~~l~~~~---------~~~~~l~~l~ 159 (384)
T 2qby_B 90 REVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIR-AIIYLDEVDTLVKRR---------GGDIVLYQLL 159 (384)
T ss_dssp HHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSC-EEEEEETTHHHHHST---------TSHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCC-CEEEEECHHHhccCC---------CCceeHHHHh
Confidence 5432 0 00 00111 1233444444444333 499999999996431 1233 44444
Q ss_pred hhhcCCCeEEEEccChHHHHHHhhccHHHHhccc-cEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhc
Q 003088 417 PSLGRGELQCIASTTQDEHRTQFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495 (849)
Q Consensus 417 ~~le~~~i~vI~at~~~~~~~~~~~d~al~~Rf~-~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~ 495 (849)
... .++.+|++|+..++. ..+++.+.+||. .+.|++|+.++..+++...+.. ...+..++++++..++..+.+
T Consensus 160 ~~~--~~~~iI~~t~~~~~~--~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~--~~~~~~~~~~~~~~i~~~~~~ 233 (384)
T 2qby_B 160 RSD--ANISVIMISNDINVR--DYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEY--GLIKGTYDDEILSYIAAISAK 233 (384)
T ss_dssp TSS--SCEEEEEECSSTTTT--TTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHH--TSCTTSCCSHHHHHHHHHHHT
T ss_pred cCC--cceEEEEEECCCchH--hhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHh--hcccCCcCHHHHHHHHHHHHh
Confidence 433 789999999976432 267899999984 7999999999999999887652 123567899999999988873
Q ss_pred ccccCcchhhHHHHHHHHhhHH
Q 003088 496 YISDRYLPDKAIDLVDEAGSRA 517 (849)
Q Consensus 496 ~~~~r~~p~~ai~ll~~a~~~~ 517 (849)
+. ..+..+++++..+...+
T Consensus 234 ~~---G~~r~a~~~l~~a~~~a 252 (384)
T 2qby_B 234 EH---GDARKAVNLLFRAAQLA 252 (384)
T ss_dssp TC---CCHHHHHHHHHHHHHHT
T ss_pred cc---CCHHHHHHHHHHHHHHh
Confidence 21 23457888888876544
No 110
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.51 E-value=1.2e-13 Score=156.83 Aligned_cols=205 Identities=17% Similarity=0.188 Sum_probs=130.3
Q ss_pred CCCCcc-ccHHH--HHHHHHHHhcCC-CCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhccccc
Q 003088 288 LIDPVI-GRETE--IQRIIQILCRRT-KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKE 363 (849)
Q Consensus 288 ~l~~ii-G~~~~--i~~l~~~l~~~~-~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~~~~~ 363 (849)
+|++++ |..+. ...+..+..... .++++|+||||+|||++|+++++.+... ..+..++.+++..+.. ..
T Consensus 103 tfd~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~-----~~~~~v~~v~~~~~~~--~~ 175 (440)
T 2z4s_A 103 TFENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQN-----EPDLRVMYITSEKFLN--DL 175 (440)
T ss_dssp SGGGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHH-----CCSSCEEEEEHHHHHH--HH
T ss_pred ChhhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHh-----CCCCeEEEeeHHHHHH--HH
Confidence 466666 54433 344444544433 6789999999999999999999988542 1145666777655431 11
Q ss_pred cchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCCCeEEEEccChHHHHHHhhccH
Q 003088 364 RGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDK 443 (849)
Q Consensus 364 ~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~~i~vI~at~~~~~~~~~~~d~ 443 (849)
.+.+.......+.......+.||||||+|.+.+.. .....+...+....+.+..++|++.+... .+..+++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~~-------~~q~~l~~~l~~l~~~~~~iIitt~~~~~--~l~~l~~ 246 (440)
T 2z4s_A 176 VDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKT-------GVQTELFHTFNELHDSGKQIVICSDREPQ--KLSEFQD 246 (440)
T ss_dssp HHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSCH-------HHHHHHHHHHHHHHTTTCEEEEEESSCGG--GCSSCCH
T ss_pred HHHHHcccHHHHHHHhcCCCCEEEEeCcccccCCh-------HHHHHHHHHHHHHHHCCCeEEEEECCCHH--HHHHHHH
Confidence 11111100011111112256799999999994210 11233445555555666666666555443 1223789
Q ss_pred HHHhcc---ccEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhcccccCcchhhHHHHHHHHhhHHH
Q 003088 444 ALARRF---QPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAH 518 (849)
Q Consensus 444 al~~Rf---~~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~~~r~~p~~ai~ll~~a~~~~~ 518 (849)
+|.+|| ..+.+++|+.+++.+||+..+. ..++.++++++..++..+.+. +..+..+++.+...+.
T Consensus 247 ~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~----~~~~~i~~e~l~~la~~~~gn------~R~l~~~L~~~~~~a~ 314 (440)
T 2z4s_A 247 RLVSRFQMGLVAKLEPPDEETRKSIARKMLE----IEHGELPEEVLNFVAENVDDN------LRRLRGAIIKLLVYKE 314 (440)
T ss_dssp HHHHHHHSSBCCBCCCCCHHHHHHHHHHHHH----HHTCCCCTTHHHHHHHHCCSC------HHHHHHHHHHHHHHHH
T ss_pred HHHhhccCCeEEEeCCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHhcCCC------HHHHHHHHHHHHHHHH
Confidence 999999 4799999999999999988776 457889999999988776543 3467777777766554
No 111
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.50 E-value=4.6e-14 Score=152.45 Aligned_cols=179 Identities=20% Similarity=0.309 Sum_probs=116.2
Q ss_pred CCccccHHHHHHHHHHHhc--CCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhh--------c
Q 003088 290 DPVIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM--------A 359 (849)
Q Consensus 290 ~~iiG~~~~i~~l~~~l~~--~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~--------~ 359 (849)
++++|++..++.+.+.+.. ....++||+||||||||++|++|+......+.| ++.+++..+. .
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~-------~v~v~~~~~~~~l~~~~lf 74 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSARSDRP-------LVTLNCAALNESLLESELF 74 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSSCSSSC-------CCEEECSSCCHHHHHHHHT
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCcccCCC-------eEEEeCCCCChHHHHHHhc
Confidence 4689999999998887754 567899999999999999999999987544333 4444443321 1
Q ss_pred cccccchHHHH---HHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCC-------------C
Q 003088 360 GAKERGELEAR---VTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-------------E 423 (849)
Q Consensus 360 ~~~~~g~~e~~---l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~-------------~ 423 (849)
|. ..|.+... ....+.. ..+++|||||++.+ ..+.+..|+.+++.+ +
T Consensus 75 g~-~~g~~tg~~~~~~g~~~~---a~~g~L~LDEi~~l-------------~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~ 137 (304)
T 1ojl_A 75 GH-EKGAFTGADKRREGRFVE---ADGGTLFLDEIGDI-------------SPLMQVRLLRAIQEREVQRVGSNQTISVD 137 (304)
T ss_dssp CC-CSSCCC---CCCCCHHHH---HTTSEEEEESCTTC-------------CHHHHHHHHHHHHSSBCCBTTBCCCCBCC
T ss_pred Cc-cccccCchhhhhcCHHHh---cCCCEEEEeccccC-------------CHHHHHHHHHHHhcCEeeecCCcccccCC
Confidence 11 01111110 1112222 23469999999999 346677788888754 3
Q ss_pred eEEEEccChHHHHH--HhhccHHHHhccccEE--ecCCC--HHHHHHHHHHHHHHHHhhcC---CccCHHHHHHHHHh
Q 003088 424 LQCIASTTQDEHRT--QFEKDKALARRFQPVL--ISEPS--QEDAVRILLGLREKYEAHHN---CKFTLEAINAAVHL 492 (849)
Q Consensus 424 i~vI~at~~~~~~~--~~~~d~al~~Rf~~i~--~~~ps--~~e~~~iL~~~~~~~~~~~~---~~i~~~~l~~~a~l 492 (849)
+++|++||.+-... --..++.|..||..+. +|++. .++...++..+..++....+ ..++++++..+..+
T Consensus 138 ~riI~atn~~l~~~v~~g~fr~~L~~Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~ 215 (304)
T 1ojl_A 138 VRLIAATHRDLAEEVSAGRFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHY 215 (304)
T ss_dssp CEEEEEESSCHHHHHHHTSSCHHHHHHHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHC
T ss_pred eEEEEecCccHHHHHHhCCcHHHHHhhcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcC
Confidence 88999999763211 1124688999997655 44444 45666677776666544333 57899998887664
No 112
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.50 E-value=1.2e-15 Score=185.37 Aligned_cols=204 Identities=18% Similarity=0.276 Sum_probs=142.9
Q ss_pred cCCCCccccHHHHHHHHHHHhc-------------CCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEee
Q 003088 287 ELIDPVIGRETEIQRIIQILCR-------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD 353 (849)
Q Consensus 287 ~~l~~iiG~~~~i~~l~~~l~~-------------~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~ 353 (849)
..+++++|.++..+.+.+.+.. ....++||+||||||||++|+++|..+ +..++.++
T Consensus 474 v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~----------~~~~i~v~ 543 (806)
T 1ypw_A 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISIK 543 (806)
T ss_dssp CSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHH----------TCCCCCCC
T ss_pred ccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHh----------CCCEEEEe
Confidence 3578899999998888886632 245679999999999999999999998 34455566
Q ss_pred hhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCC-CCccHHHHHHHhhhhc----CCCeEEEE
Q 003088 354 MGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGN-KGTGLDISNLLKPSLG----RGELQCIA 428 (849)
Q Consensus 354 ~~~~~~~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~-~~~~~~~~~~L~~~le----~~~i~vI~ 428 (849)
...+. .++.|+.+..++.+|+.++...++||||||+|.+........+. .+....+++.|+..++ ...++||+
T Consensus 544 ~~~l~--~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~ 621 (806)
T 1ypw_A 544 GPELL--TMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIG 621 (806)
T ss_dssp CSSST--TCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCCC
T ss_pred chHhh--hhhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEEE
Confidence 55554 45678888999999999998889999999999997654321100 0012345566666664 45689999
Q ss_pred ccChHHHHHHhhccHHHHh--ccc-cEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhcccccCcchhh
Q 003088 429 STTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDK 505 (849)
Q Consensus 429 at~~~~~~~~~~~d~al~~--Rf~-~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~~~r~~p~~ 505 (849)
|||..+ .+|+++.| ||. .|+|+.|+.+++.+||+...+.......+. +..++..+.+| .+..
T Consensus 622 tTN~~~-----~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~-----l~~la~~t~g~-----sgad 686 (806)
T 1ypw_A 622 ATNRPD-----IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVD-----LEFLAKMTNGF-----SGAD 686 (806)
T ss_dssp CCBSCG-----GGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC----CCC-----CSCSCGGGSSS-----CCHH
T ss_pred ecCCcc-----cCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCCcccC-----HHHHHHhcccc-----CHHH
Confidence 999886 78999999 997 799999999999999987654221111111 22233333333 3456
Q ss_pred HHHHHHHHhhHH
Q 003088 506 AIDLVDEAGSRA 517 (849)
Q Consensus 506 ai~ll~~a~~~~ 517 (849)
...++.+|+..+
T Consensus 687 i~~l~~~a~~~a 698 (806)
T 1ypw_A 687 LTEICQRACKLA 698 (806)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666777766554
No 113
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.49 E-value=3.1e-13 Score=151.39 Aligned_cols=105 Identities=26% Similarity=0.305 Sum_probs=74.6
Q ss_pred CeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcC------------CCeEEEEcc-----ChHHHHHHhhccHHH
Q 003088 383 DVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR------------GELQCIAST-----TQDEHRTQFEKDKAL 445 (849)
Q Consensus 383 ~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~------------~~i~vI~at-----~~~~~~~~~~~d~al 445 (849)
+.|||+||+|.+...+....+ .-++..+++.|++.++. .++.+|+++ ++. .+.|.|
T Consensus 251 ~~il~~DEidki~~~~~~~~~-D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~------dlipel 323 (444)
T 1g41_A 251 NGIVFIDEIDKICKKGEYSGA-DVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPS------DLIPEL 323 (444)
T ss_dssp HCEEEEETGGGGSCCSSCSSS-HHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGG------GSCHHH
T ss_pred CCeeeHHHHHHHhhccCCCCC-CchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChh------hcchHH
Confidence 359999999999654321100 01122367889888874 457899887 443 456999
Q ss_pred Hhcccc-EEecCCCHHHHHHHHHH----HHHHHHhh-----cCCccCHHHHHHHHHhhh
Q 003088 446 ARRFQP-VLISEPSQEDAVRILLG----LREKYEAH-----HNCKFTLEAINAAVHLSA 494 (849)
Q Consensus 446 ~~Rf~~-i~~~~ps~~e~~~iL~~----~~~~~~~~-----~~~~i~~~~l~~~a~ls~ 494 (849)
..||.. |.|+.++.++..+|+.. +..+|... ..+.++++++..+++.+.
T Consensus 324 ~~R~~i~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~ 382 (444)
T 1g41_A 324 QGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAF 382 (444)
T ss_dssp HTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHH
T ss_pred hcccceeeeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHH
Confidence 999995 99999999999999942 44444322 345799999999998754
No 114
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.49 E-value=1e-13 Score=153.43 Aligned_cols=161 Identities=20% Similarity=0.258 Sum_probs=114.0
Q ss_pred ccccccHHHHHHHHHHHHHhhcCCC---CCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccc
Q 003088 629 KRVIGQDEAVAAISRAVKRSRVGLK---DPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVS 705 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~~~~g~~---~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~ 705 (849)
+.|+|++.+++.|...+........ ...++..++||+||||||||++|+++|+.+ +.+|+.++++++...
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~---~~~~~~i~~~~l~~~---- 156 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS---GATFFSISASSLTSK---- 156 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT---TCEEEEEEGGGGCCS----
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc---CCeEEEEehHHhhcc----
Confidence 5699999999999988865311100 001233469999999999999999999986 678999999876432
Q ss_pred cccCCCCCccccccC--cchhHHHHhCCCeEEEEeCccccC-----------HHHHHHHHHHhhcCeeecCCCceeecCC
Q 003088 706 KLIGSPPGYVGYEEG--GLLTEAIRRRPFTLLLLDEIEKAH-----------PDIFNILLQVFEDGHLTDSHGRRVSFKN 772 (849)
Q Consensus 706 ~l~g~~~g~vg~~~~--~~l~~~i~~~~~~vl~lDEid~l~-----------~~~~~~Ll~~le~g~~~~~~g~~~~~~~ 772 (849)
|+|..+. ..+........++||||||||.+. ..+++.|+..++..... ...+
T Consensus 157 --------~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~-------~~~~ 221 (357)
T 3d8b_A 157 --------WVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTS-------SEDR 221 (357)
T ss_dssp --------STTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC-----------CCCC
T ss_pred --------ccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhccccc-------CCCC
Confidence 3333221 123334445667999999999883 35788899999863211 1247
Q ss_pred eEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHHHcccc
Q 003088 773 ALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQLP 847 (849)
Q Consensus 773 ~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~I~ 847 (849)
++||+|||.... +++.+++||+..+.+++++.++..+|+
T Consensus 222 v~vI~atn~~~~------------------------------------l~~~l~~Rf~~~i~i~~p~~~~r~~il 260 (357)
T 3d8b_A 222 ILVVGATNRPQE------------------------------------IDEAARRRLVKRLYIPLPEASARKQIV 260 (357)
T ss_dssp EEEEEEESCGGG------------------------------------BCHHHHTTCCEEEECCCCCHHHHHHHH
T ss_pred EEEEEecCChhh------------------------------------CCHHHHhhCceEEEeCCcCHHHHHHHH
Confidence 899999997311 678899999989999999988877765
No 115
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.49 E-value=1.5e-13 Score=147.97 Aligned_cols=162 Identities=21% Similarity=0.276 Sum_probs=112.6
Q ss_pred ccccccHHHHHHHHHHHHHhhcC---CCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccc
Q 003088 629 KRVIGQDEAVAAISRAVKRSRVG---LKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVS 705 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~~~~g---~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~ 705 (849)
+.++|++.+++.+...+...... ...-..|..++||+||||||||++|+++++.+ +.+++.++|+++...
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~---- 93 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC---SATFLNISAASLTSK---- 93 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT---TCEEEEEESTTTSSS----
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh---CCCeEEeeHHHHhhc----
Confidence 56999999999998888653210 00001223469999999999999999999986 567999998776432
Q ss_pred cccCCCCCcccccc--CcchhHHHHhCCCeEEEEeCccccC-----------HHHHHHHHHHhhcCeeecCCCceeecCC
Q 003088 706 KLIGSPPGYVGYEE--GGLLTEAIRRRPFTLLLLDEIEKAH-----------PDIFNILLQVFEDGHLTDSHGRRVSFKN 772 (849)
Q Consensus 706 ~l~g~~~g~vg~~~--~~~l~~~i~~~~~~vl~lDEid~l~-----------~~~~~~Ll~~le~g~~~~~~g~~~~~~~ 772 (849)
++|..+ ...+........++||||||+|.+. ..+++.|+..++...... ...+
T Consensus 94 --------~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~------~~~~ 159 (297)
T 3b9p_A 94 --------YVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNP------DGDR 159 (297)
T ss_dssp --------SCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------------C
T ss_pred --------ccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccC------CCCc
Confidence 223221 1123334445667999999999883 467888999888632111 1135
Q ss_pred eEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHHHcccc
Q 003088 773 ALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQLP 847 (849)
Q Consensus 773 ~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~I~ 847 (849)
++||++||... .+++.+++||+..+.|++++.++...|+
T Consensus 160 v~vi~~tn~~~------------------------------------~l~~~l~~R~~~~i~~~~p~~~~r~~il 198 (297)
T 3b9p_A 160 IVVLAATNRPQ------------------------------------ELDEAALRRFTKRVYVSLPDEQTRELLL 198 (297)
T ss_dssp EEEEEEESCGG------------------------------------GBCHHHHHHCCEEEECCCCCHHHHHHHH
T ss_pred EEEEeecCChh------------------------------------hCCHHHHhhCCeEEEeCCcCHHHHHHHH
Confidence 88999999632 1678899999999999999988877665
No 116
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.48 E-value=6.6e-14 Score=160.39 Aligned_cols=155 Identities=22% Similarity=0.374 Sum_probs=115.1
Q ss_pred ccccccHHHHHHHHHHHHHh--------hcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeecccccc
Q 003088 629 KRVIGQDEAVAAISRAVKRS--------RVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYME 700 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~~--------~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~ 700 (849)
+.|+|++.+++.|...+... ..|.. +..++||+||||||||++|+++|+.+ +.+|+.++|+++..
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~----~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~vn~~~l~~ 276 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVK----PPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMS 276 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCC----CCCEEEEECSTTSSHHHHHHHHHHHC---SSEEEEEEHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCC----CCCcEEEECcCCCCHHHHHHHHHHHh---CCCEEEEEchHhhh
Confidence 56999999999998888653 12222 22359999999999999999999985 67899999988754
Q ss_pred ccccccccCCCCCcccccc---CcchhHHHHhCCCeEEEEeCccccCH-----------HHHHHHHHHhhcCeeecCCCc
Q 003088 701 RHTVSKLIGSPPGYVGYEE---GGLLTEAIRRRPFTLLLLDEIEKAHP-----------DIFNILLQVFEDGHLTDSHGR 766 (849)
Q Consensus 701 ~~~~~~l~g~~~g~vg~~~---~~~l~~~i~~~~~~vl~lDEid~l~~-----------~~~~~Ll~~le~g~~~~~~g~ 766 (849)
. |+|..+ .+.+..+ .....+||||||||.+.+ .+++.|+..|+...
T Consensus 277 ~------------~~g~~~~~~~~~f~~A-~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~------- 336 (489)
T 3hu3_A 277 K------------LAGESESNLRKAFEEA-EKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK------- 336 (489)
T ss_dssp S------------CTTHHHHHHHHHHHHH-HHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSC-------
T ss_pred h------------hcchhHHHHHHHHHHH-HhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccc-------
Confidence 2 233322 1222232 344568999999987754 68999999998532
Q ss_pred eeecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhh--ccccEEEcCCCCHHHHc
Q 003088 767 RVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLN--RIDEVVVFRSLEKAQVC 844 (849)
Q Consensus 767 ~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~--R~d~~i~f~pl~~~~~~ 844 (849)
...+++||+|||.... +++.+.+ ||+..+.|++++.++..
T Consensus 337 --~~~~v~vIaaTn~~~~------------------------------------Ld~al~r~gRf~~~i~i~~P~~~eR~ 378 (489)
T 3hu3_A 337 --QRAHVIVMAATNRPNS------------------------------------IDPALRRFGRFDREVDIGIPDATGRL 378 (489)
T ss_dssp --TTSCEEEEEEESCGGG------------------------------------BCGGGGSTTSSCEEEECCCCCHHHHH
T ss_pred --cCCceEEEEecCCccc------------------------------------cCHHHhCCCcCceEEEeCCCCHHHHH
Confidence 2347899999997421 6678876 89999999999999888
Q ss_pred cccC
Q 003088 845 QLPL 848 (849)
Q Consensus 845 ~I~~ 848 (849)
+|++
T Consensus 379 ~IL~ 382 (489)
T 3hu3_A 379 EILQ 382 (489)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 117
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.48 E-value=8.4e-14 Score=148.94 Aligned_cols=159 Identities=21% Similarity=0.386 Sum_probs=112.6
Q ss_pred ccccccHHHHHHHHHHHHHhh--------cCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeecccccc
Q 003088 629 KRVIGQDEAVAAISRAVKRSR--------VGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYME 700 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~~~--------~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~ 700 (849)
+.++|++.+++.+...+.... .|.. +..++||+||||||||++|+++++.+ +.+++.++++++..
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~ll~G~~GtGKT~la~~la~~~---~~~~~~v~~~~~~~ 89 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIE----PPKGILLYGPPGTGKTLLAKAVATET---NATFIRVVGSELVK 89 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCC----CCSEEEEESSSSSSHHHHHHHHHHHT---TCEEEEEEGGGGCC
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCC----CCCeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEehHHHHH
Confidence 568999999999988775431 1222 22359999999999999999999986 66789888876643
Q ss_pred ccccccccCCCCCccccccC--cchhHHHHhCCCeEEEEeCcccc-----------CHHHHHHHHHHhhcCeeecCCCce
Q 003088 701 RHTVSKLIGSPPGYVGYEEG--GLLTEAIRRRPFTLLLLDEIEKA-----------HPDIFNILLQVFEDGHLTDSHGRR 767 (849)
Q Consensus 701 ~~~~~~l~g~~~g~vg~~~~--~~l~~~i~~~~~~vl~lDEid~l-----------~~~~~~~Ll~~le~g~~~~~~g~~ 767 (849)
. ++|..+. ..+........++||||||+|.+ +...+..|+++++...-..
T Consensus 90 ~------------~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~----- 152 (285)
T 3h4m_A 90 K------------FIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFD----- 152 (285)
T ss_dssp C------------STTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTC-----
T ss_pred h------------ccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCC-----
Confidence 2 2332221 12333444556689999999998 5667777777765411000
Q ss_pred eecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhh--ccccEEEcCCCCHHHHcc
Q 003088 768 VSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLN--RIDEVVVFRSLEKAQVCQ 845 (849)
Q Consensus 768 ~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~--R~d~~i~f~pl~~~~~~~ 845 (849)
...+++||+|||... .+++.++. ||+.++.|++++.++..+
T Consensus 153 -~~~~~~vI~ttn~~~------------------------------------~l~~~l~~~~Rf~~~i~~~~p~~~~r~~ 195 (285)
T 3h4m_A 153 -ARGDVKIIGATNRPD------------------------------------ILDPAILRPGRFDRIIEVPAPDEKGRLE 195 (285)
T ss_dssp -SSSSEEEEEECSCGG------------------------------------GBCHHHHSTTSEEEEEECCCCCHHHHHH
T ss_pred -CCCCEEEEEeCCCch------------------------------------hcCHHHcCCCcCCeEEEECCCCHHHHHH
Confidence 123789999999631 16788887 999999999999999888
Q ss_pred ccC
Q 003088 846 LPL 848 (849)
Q Consensus 846 I~~ 848 (849)
|++
T Consensus 196 il~ 198 (285)
T 3h4m_A 196 ILK 198 (285)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 118
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.48 E-value=2.1e-13 Score=143.77 Aligned_cols=160 Identities=22% Similarity=0.274 Sum_probs=103.0
Q ss_pred ccccccHHHHHHHHHHHHHhhcCCC---CCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccc
Q 003088 629 KRVIGQDEAVAAISRAVKRSRVGLK---DPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVS 705 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~~~~g~~---~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~ 705 (849)
+.++|++.+++.+...+........ ....+..++||+||||||||++|+++|+.+ +.+++.++++++...
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~---~~~~~~~~~~~~~~~---- 78 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA---QVPFLAMAGAEFVEV---- 78 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH---TCCEEEEETTTTSSS----
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCEEEechHHHHhh----
Confidence 6799999999999887654321100 001223459999999999999999999987 567999999876431
Q ss_pred cccCCCCCcccccc--CcchhHHHHhCCCeEEEEeCccccC------------HH---HHHHHHHHhhcCeeecCCCcee
Q 003088 706 KLIGSPPGYVGYEE--GGLLTEAIRRRPFTLLLLDEIEKAH------------PD---IFNILLQVFEDGHLTDSHGRRV 768 (849)
Q Consensus 706 ~l~g~~~g~vg~~~--~~~l~~~i~~~~~~vl~lDEid~l~------------~~---~~~~Ll~~le~g~~~~~~g~~~ 768 (849)
+.|... ...+........++||||||+|.+. .. .++.|+..++...
T Consensus 79 --------~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~--------- 141 (262)
T 2qz4_A 79 --------IGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMG--------- 141 (262)
T ss_dssp --------STTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCC---------
T ss_pred --------ccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcC---------
Confidence 222211 1112223334457999999999983 33 3455555555411
Q ss_pred ecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhh--ccccEEEcCCCCHHHHccc
Q 003088 769 SFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLN--RIDEVVVFRSLEKAQVCQL 846 (849)
Q Consensus 769 ~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~--R~d~~i~f~pl~~~~~~~I 846 (849)
...+++||+|+|.... +++.++. ||+..+.|++++.++..+|
T Consensus 142 ~~~~~~vi~~tn~~~~------------------------------------ld~~l~~~~R~~~~i~i~~p~~~~r~~i 185 (262)
T 2qz4_A 142 TTDHVIVLASTNRADI------------------------------------LDGALMRPGRLDRHVFIDLPTLQERREI 185 (262)
T ss_dssp TTCCEEEEEEESCGGG------------------------------------GGSGGGSTTSCCEEEECCSCCHHHHHHH
T ss_pred CCCCEEEEecCCChhh------------------------------------cCHHHhcCCcCCeEEEeCCcCHHHHHHH
Confidence 1247899999996321 5567776 9998999999998888776
Q ss_pred cC
Q 003088 847 PL 848 (849)
Q Consensus 847 ~~ 848 (849)
++
T Consensus 186 l~ 187 (262)
T 2qz4_A 186 FE 187 (262)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 119
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.45 E-value=4e-13 Score=152.61 Aligned_cols=156 Identities=24% Similarity=0.385 Sum_probs=111.5
Q ss_pred ccccccHHHHHHHHHHHHHhh-------cCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccc
Q 003088 629 KRVIGQDEAVAAISRAVKRSR-------VGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMER 701 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~~~-------~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~ 701 (849)
+.|+|++++++.+...+.... .|... | .++||+||||||||++|+++|... +.+|+.++++++...
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~---p-~gvLL~GppGtGKT~Laraia~~~---~~~f~~is~~~~~~~ 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARM---P-KGILLVGPPGTGKTLLARAVAGEA---NVPFFHISGSDFVEL 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCC---C-SEEEEECCTTSSHHHHHHHHHHHH---TCCEEEEEGGGTTTC
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCC---C-CeEEEECCCCCCHHHHHHHHHHHc---CCCeeeCCHHHHHHH
Confidence 569999999999888776532 12222 2 249999999999999999999986 678999998877542
Q ss_pred cccccccCCCCCccccccC--cchhHHHHhCCCeEEEEeCccccCH--------------HHHHHHHHHhhcCeeecCCC
Q 003088 702 HTVSKLIGSPPGYVGYEEG--GLLTEAIRRRPFTLLLLDEIEKAHP--------------DIFNILLQVFEDGHLTDSHG 765 (849)
Q Consensus 702 ~~~~~l~g~~~g~vg~~~~--~~l~~~i~~~~~~vl~lDEid~l~~--------------~~~~~Ll~~le~g~~~~~~g 765 (849)
|+|.... ..+........++||||||+|.+.+ .+++.|+..|+.-.
T Consensus 89 ------------~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~------ 150 (476)
T 2ce7_A 89 ------------FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFD------ 150 (476)
T ss_dssp ------------CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSC------
T ss_pred ------------HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccC------
Confidence 2332221 1222333344569999999999853 36888998887411
Q ss_pred ceeecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhh--ccccEEEcCCCCHHHH
Q 003088 766 RRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLN--RIDEVVVFRSLEKAQV 843 (849)
Q Consensus 766 ~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~--R~d~~i~f~pl~~~~~ 843 (849)
...+++||++||.... ++|.++. |||..|.+++++.++.
T Consensus 151 ---~~~~viVIaaTn~~~~------------------------------------Ld~allR~gRFd~~i~i~~Pd~~~R 191 (476)
T 2ce7_A 151 ---SKEGIIVMAATNRPDI------------------------------------LDPALLRPGRFDKKIVVDPPDMLGR 191 (476)
T ss_dssp ---GGGTEEEEEEESCGGG------------------------------------SCGGGGSTTSSCEEEECCCCCHHHH
T ss_pred ---CCCCEEEEEecCChhh------------------------------------hchhhcccCcceeEeecCCCCHHHH
Confidence 1237899999997311 5677774 9999999999998887
Q ss_pred ccccC
Q 003088 844 CQLPL 848 (849)
Q Consensus 844 ~~I~~ 848 (849)
.+|++
T Consensus 192 ~~Il~ 196 (476)
T 2ce7_A 192 KKILE 196 (476)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77763
No 120
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.44 E-value=3.4e-13 Score=148.48 Aligned_cols=172 Identities=18% Similarity=0.188 Sum_probs=103.8
Q ss_pred ccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCC----CCceeEeeccccccccc-
Q 003088 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGS----ESSMLRLDMSEYMERHT- 703 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~----~~~~i~i~~~~~~~~~~- 703 (849)
+.++|++.++..+..+.... ..+++||+||||||||++|+++++.+.+. ..+ ++|........
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~---------~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~---~~~~~~~~~~~~ 91 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDP---------GIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCP---VSSPNVEMIPDW 91 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCG---------GGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCT---TCCSSGGGSCTT
T ss_pred hhccChHHHHHHHHHHhhCC---------CCceEEEECCCCccHHHHHHHHHHhCcccccccccc---ccccccccccch
Confidence 56999999776643333211 11349999999999999999999987320 112 23332211110
Q ss_pred -----------------------cccccCCCCCc--cccccCcchhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhhcC
Q 003088 704 -----------------------VSKLIGSPPGY--VGYEEGGLLTEAIRRRPFTLLLLDEIEKAHPDIFNILLQVFEDG 758 (849)
Q Consensus 704 -----------------------~~~l~g~~~g~--vg~~~~~~l~~~i~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g 758 (849)
...++|...-. ..........+.+..+.++|||||||+.+++++++.|++.|+++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~~~~~Ll~~le~~ 171 (350)
T 1g8p_A 92 ATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDHIVDLLLDVAQSG 171 (350)
T ss_dssp CCCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHHHHHHHHHHHHHS
T ss_pred hhhhccccccCCCcccccCCCcchhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCCHHHHHHHHHHHhcC
Confidence 01112210000 00000000011223345789999999999999999999999998
Q ss_pred ee--ecCCCceeecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcC
Q 003088 759 HL--TDSHGRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFR 836 (849)
Q Consensus 759 ~~--~~~~g~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~ 836 (849)
.. ...++......+++||+|+|+.. . .++++|++||+..+.++
T Consensus 172 ~~~~~~~g~~~~~~~~~~li~~~n~~~------~-----------------------------~l~~~L~~R~~~~~~l~ 216 (350)
T 1g8p_A 172 ENVVERDGLSIRHPARFVLVGSGNPEE------G-----------------------------DLRPQLLDRFGLSVEVL 216 (350)
T ss_dssp EEEECCTTCCEEEECCEEEEEEECSCS------C-----------------------------CCCHHHHTTCSEEEECC
T ss_pred ceEEEecceEEeeCCceEEEEEeCCCC------C-----------------------------CCCHHHHhhcceEEEcC
Confidence 63 33233222334899999999621 0 17899999999889999
Q ss_pred CCC-HHHHcccc
Q 003088 837 SLE-KAQVCQLP 847 (849)
Q Consensus 837 pl~-~~~~~~I~ 847 (849)
+++ .++..+|+
T Consensus 217 ~~~~~~~~~~il 228 (350)
T 1g8p_A 217 SPRDVETRVEVI 228 (350)
T ss_dssp CCCSHHHHHHHH
T ss_pred CCCcHHHHHHHH
Confidence 995 54444443
No 121
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.43 E-value=1.1e-13 Score=146.72 Aligned_cols=158 Identities=23% Similarity=0.358 Sum_probs=103.9
Q ss_pred ccccccHHHHHHHHHHHHHhh-------cCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccc
Q 003088 629 KRVIGQDEAVAAISRAVKRSR-------VGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMER 701 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~~~-------~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~ 701 (849)
+.++|++.+++.+...+.... .|...| .++||+||||||||++|+++++.+ +.+++.++++.+...
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~vll~G~~GtGKT~la~~la~~~---~~~~~~v~~~~~~~~ 83 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIP----KGVLLVGPPGTGKTLLAKAVAGEA---HVPFFSMGGSSFIEM 83 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCC----SCCCCBCSSCSSHHHHHHHHHHHH---TCCCCCCCSCTTTTS
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCC----ceEEEECCCCCcHHHHHHHHHHHh---CCCEEEechHHHHHh
Confidence 568999988888887765321 132222 239999999999999999999987 457888888766432
Q ss_pred cccccccCCCCCccccccCcchhHHHHhCCCeEEEEeCccccCHH---------------HHHHHHHHhhcCeeecCCCc
Q 003088 702 HTVSKLIGSPPGYVGYEEGGLLTEAIRRRPFTLLLLDEIEKAHPD---------------IFNILLQVFEDGHLTDSHGR 766 (849)
Q Consensus 702 ~~~~~l~g~~~g~vg~~~~~~l~~~i~~~~~~vl~lDEid~l~~~---------------~~~~Ll~~le~g~~~~~~g~ 766 (849)
+.|... .....+.........+||||||+|.+... +++.|+..++...
T Consensus 84 -----~~~~~~-----~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~------- 146 (268)
T 2r62_A 84 -----FVGLGA-----SRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFG------- 146 (268)
T ss_dssp -----CSSSCS-----SSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSS-------
T ss_pred -----hcchHH-----HHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcc-------
Confidence 222111 11122334444455689999999999764 4566776665411
Q ss_pred eeecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhh--ccccEEEcCCCCHHHHc
Q 003088 767 RVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLN--RIDEVVVFRSLEKAQVC 844 (849)
Q Consensus 767 ~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~--R~d~~i~f~pl~~~~~~ 844 (849)
....+++||+|||.... +++.++. ||+..+.|++++.++..
T Consensus 147 -~~~~~v~vi~ttn~~~~------------------------------------ld~~l~r~~Rf~~~i~i~~p~~~~r~ 189 (268)
T 2r62_A 147 -SENAPVIVLAATNRPEI------------------------------------LDPALMRPGRFDRQVLVDKPDFNGRV 189 (268)
T ss_dssp -CSCSCCEEEECBSCCTT------------------------------------SCGGGGSSSSSCCCCBCCCCCTTTHH
T ss_pred -cCCCCEEEEEecCCchh------------------------------------cCHhHcCCCCCCeEEEecCcCHHHHH
Confidence 01235889999997521 5566665 77777777777776666
Q ss_pred ccc
Q 003088 845 QLP 847 (849)
Q Consensus 845 ~I~ 847 (849)
+|+
T Consensus 190 ~il 192 (268)
T 2r62_A 190 EIL 192 (268)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 122
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.42 E-value=7.8e-13 Score=139.26 Aligned_cols=159 Identities=23% Similarity=0.352 Sum_probs=107.2
Q ss_pred ccccccHHHHHHHHHHHHHhhcC--CCC-CCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccc
Q 003088 629 KRVIGQDEAVAAISRAVKRSRVG--LKD-PNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVS 705 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~~~~g--~~~-~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~ 705 (849)
+.|+|++.+++.+...+...... +.. ...+..+++|+||||||||++|++++..+ +.+++.++++++...
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~---~~~~~~i~~~~~~~~---- 84 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA---KVPFFTISGSDFVEM---- 84 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH---TCCEEEECSCSSTTS----
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc---CCCEEEEeHHHHHHH----
Confidence 67999999999988776543210 000 01122349999999999999999999987 457899998876432
Q ss_pred cccCCCCCccccccC--cchhHHHHhCCCeEEEEeCccccCH--------------HHHHHHHHHhhcCeeecCCCceee
Q 003088 706 KLIGSPPGYVGYEEG--GLLTEAIRRRPFTLLLLDEIEKAHP--------------DIFNILLQVFEDGHLTDSHGRRVS 769 (849)
Q Consensus 706 ~l~g~~~g~vg~~~~--~~l~~~i~~~~~~vl~lDEid~l~~--------------~~~~~Ll~~le~g~~~~~~g~~~~ 769 (849)
+.|.... ..+........++++||||+|.+.. ..++.|+..++... .
T Consensus 85 --------~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~---------~ 147 (257)
T 1lv7_A 85 --------FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFE---------G 147 (257)
T ss_dssp --------CCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCC---------S
T ss_pred --------hhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcc---------c
Confidence 2222211 1122223334568999999987743 46778888887521 1
Q ss_pred cCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhh--ccccEEEcCCCCHHHHcccc
Q 003088 770 FKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLN--RIDEVVVFRSLEKAQVCQLP 847 (849)
Q Consensus 770 ~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~--R~d~~i~f~pl~~~~~~~I~ 847 (849)
..+++||+|||.... +++.++. ||+..+.|++++.++..+|+
T Consensus 148 ~~~~~vI~~tn~~~~------------------------------------l~~~l~r~~rf~~~i~i~~P~~~~r~~il 191 (257)
T 1lv7_A 148 NEGIIVIAATNRPDV------------------------------------LDPALLRPGRFDRQVVVGLPDVRGREQIL 191 (257)
T ss_dssp SSCEEEEEEESCTTT------------------------------------SCGGGGSTTSSCEEEECCCCCHHHHHHHH
T ss_pred CCCEEEEEeeCCchh------------------------------------CCHHHcCCCcCCeEEEeCCCCHHHHHHHH
Confidence 246889999997421 5666765 88888888888887776665
No 123
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.41 E-value=5.2e-13 Score=148.21 Aligned_cols=178 Identities=20% Similarity=0.236 Sum_probs=108.9
Q ss_pred ccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccc---
Q 003088 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVS--- 705 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~--- 705 (849)
+.++|++.+++.+.........|.. |..++||+||||||||++|+++++.+. ...+++.+++..+.......
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~~----~~~~vLl~GppGtGKT~la~~la~~l~-~~~~~~~~~~~~~~~~~~~~~~~ 118 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGKI----AGRAVLIAGQPGTGKTAIAMGMAQALG-PDTPFTAIAGSEIFSLEMSKTEA 118 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCC----TTCEEEEEESTTSSHHHHHHHHHHHHC-SSCCEEEEEGGGGSCSSSCHHHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCCC----CCCEEEEECCCCCCHHHHHHHHHHHhc-ccCCcccccchhhhhcccchhHH
Confidence 6799999999887666655544432 223599999999999999999999983 44578888876633211000
Q ss_pred ----------------------------------cccCCCCCcccccc---CcchhHHHH----hCC----CeEEEEeCc
Q 003088 706 ----------------------------------KLIGSPPGYVGYEE---GGLLTEAIR----RRP----FTLLLLDEI 740 (849)
Q Consensus 706 ----------------------------------~l~g~~~g~vg~~~---~~~l~~~i~----~~~----~~vl~lDEi 740 (849)
.+.+.-.++.|... ...+..+.. ... ++||||||+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi 198 (368)
T 3uk6_A 119 LTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEV 198 (368)
T ss_dssp HHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESG
T ss_pred HHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhc
Confidence 00011011111111 011111111 111 369999999
Q ss_pred cccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhh
Q 003088 741 EKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAY 820 (849)
Q Consensus 741 d~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~ 820 (849)
|.++++.++.|++.+++.. .. ++|++++.+...+..... .. ...
T Consensus 199 ~~l~~~~~~~L~~~le~~~-----------~~-~~ii~t~~~~~~i~~t~~-------~~-----------------~~~ 242 (368)
T 3uk6_A 199 HMLDIESFSFLNRALESDM-----------AP-VLIMATNRGITRIRGTSY-------QS-----------------PHG 242 (368)
T ss_dssp GGSBHHHHHHHHHHTTCTT-----------CC-EEEEEESCSEEECBTSSC-------EE-----------------ETT
T ss_pred cccChHHHHHHHHHhhCcC-----------CC-eeeeecccceeeeeccCC-------CC-----------------ccc
Confidence 9999999999999998732 12 355555543221110000 00 011
Q ss_pred CChHHhhccccEEEcCCCCHHHHccccC
Q 003088 821 FRPELLNRIDEVVVFRSLEKAQVCQLPL 848 (849)
Q Consensus 821 ~~pell~R~d~~i~f~pl~~~~~~~I~~ 848 (849)
++++|++||.. +.|+|++.+++.+|++
T Consensus 243 l~~~l~sR~~~-i~~~~~~~~e~~~il~ 269 (368)
T 3uk6_A 243 IPIDLLDRLLI-VSTTPYSEKDTKQILR 269 (368)
T ss_dssp CCHHHHTTEEE-EEECCCCHHHHHHHHH
T ss_pred CCHHHHhhccE-EEecCCCHHHHHHHHH
Confidence 78999999954 8999999999988864
No 124
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.41 E-value=1e-12 Score=150.14 Aligned_cols=67 Identities=30% Similarity=0.363 Sum_probs=53.7
Q ss_pred hccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccc
Q 003088 628 KKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYM 699 (849)
Q Consensus 628 ~~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~ 699 (849)
.+.++|++++++.+...+.....|.. |..++||+||||||||++|+++|+.+ +...+|+.++++++.
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~~----~~~~iLl~GppGtGKT~la~ala~~l-~~~~~~~~~~~~~~~ 102 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKKM----AGRAVLLAGPPGTGKTALALAIAQEL-GSKVPFCPMVGSEVY 102 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCC----TTCEEEEECCTTSSHHHHHHHHHHHH-CTTSCEEEEEGGGGC
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCCC----CCCeEEEECCCcCCHHHHHHHHHHHh-CCCceEEEEeHHHHH
Confidence 46799999999998888777665543 22459999999999999999999997 334788888887653
No 125
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.41 E-value=1.4e-12 Score=142.96 Aligned_cols=181 Identities=17% Similarity=0.194 Sum_probs=126.5
Q ss_pred cHHHHHHHHHHHhcCCCCC-CeEeCCCCChHHHHHHHHHHHhhhCCCCcc--c------------cCCeEEEeehhhhhc
Q 003088 295 RETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEVPVF--L------------LSKRIMSLDMGLLMA 359 (849)
Q Consensus 295 ~~~~i~~l~~~l~~~~~~n-iLL~GppGtGKT~la~~la~~l~~~~~p~~--~------------~~~~~~~l~~~~~~~ 359 (849)
+++..+.+...+...+..| +||+||+|+|||++|+.+|+.+........ . ....++.++...
T Consensus 7 ~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~--- 83 (334)
T 1a5t_A 7 LRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEK--- 83 (334)
T ss_dssp GHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCT---
T ss_pred hHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccc---
Confidence 3456777878777777666 899999999999999999999865432110 0 011233332210
Q ss_pred cccccchHHHHHHHHHHHHHh----cCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCC--CeEEEEccChH
Q 003088 360 GAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG--ELQCIASTTQD 433 (849)
Q Consensus 360 ~~~~~g~~e~~l~~l~~~~~~----~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~--~i~vI~at~~~ 433 (849)
+....+ .+.++.+++.+.. ++..|+||||+|.| +.+++|.|+..+|++ .+++|++|+..
T Consensus 84 ~~~~~~--i~~ir~l~~~~~~~~~~~~~kvviIdead~l-------------~~~a~naLLk~lEep~~~~~~Il~t~~~ 148 (334)
T 1a5t_A 84 GKNTLG--VDAVREVTEKLNEHARLGGAKVVWVTDAALL-------------TDAAANALLKTLEEPPAETWFFLATREP 148 (334)
T ss_dssp TCSSBC--HHHHHHHHHHTTSCCTTSSCEEEEESCGGGB-------------CHHHHHHHHHHHTSCCTTEEEEEEESCG
T ss_pred cCCCCC--HHHHHHHHHHHhhccccCCcEEEEECchhhc-------------CHHHHHHHHHHhcCCCCCeEEEEEeCCh
Confidence 011111 2335666666543 35689999999999 456788899999864 57888888776
Q ss_pred HHHHHhhccHHHHhccccEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhcccccCcchhhHHHHHHHH
Q 003088 434 EHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEA 513 (849)
Q Consensus 434 ~~~~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~~~r~~p~~ai~ll~~a 513 (849)
+ .+.+++++||+.+.|++|+.++..++|.... .++++++..++..+++.. .+++.+++..
T Consensus 149 ~-----~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~---------~~~~~~~~~l~~~s~G~~------r~a~~~l~~~ 208 (334)
T 1a5t_A 149 E-----RLLATLRSRCRLHYLAPPPEQYAVTWLSREV---------TMSQDALLAALRLSAGSP------GAALALFQGD 208 (334)
T ss_dssp G-----GSCHHHHTTSEEEECCCCCHHHHHHHHHHHC---------CCCHHHHHHHHHHTTTCH------HHHHHTTSSH
T ss_pred H-----hCcHHHhhcceeeeCCCCCHHHHHHHHHHhc---------CCCHHHHHHHHHHcCCCH------HHHHHHhccc
Confidence 5 7889999999999999999999998885432 678899988888887643 4555555443
No 126
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.40 E-value=4.6e-14 Score=165.83 Aligned_cols=188 Identities=15% Similarity=0.141 Sum_probs=113.3
Q ss_pred HHHHHHHHhccccccHHHHHHHHHHHHHhh-cCCC-CCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeE----e
Q 003088 620 LVGLEEQLKKRVIGQDEAVAAISRAVKRSR-VGLK-DPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLR----L 693 (849)
Q Consensus 620 ~~~l~~~l~~~i~Gq~~~i~~l~~~l~~~~-~g~~-~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~----i 693 (849)
+..+.+.+...|+|++.+++.+..++.... .... ...+...++||+||||||||++|+++|+.+.+. +.. .
T Consensus 286 ~~~l~~~l~~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~---~~~~~~~~ 362 (595)
T 3f9v_A 286 RDRIISSIAPSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRA---VYTTGKGS 362 (595)
T ss_dssp GGTHHHHTSSTTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCE---ECCCTTCS
T ss_pred HHHHHHhhcchhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCc---eecCCCcc
Confidence 445667788899999998877644332110 0000 011222379999999999999999999876221 111 1
Q ss_pred eccccccccccccccCCCCCccccccCcchhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhhcCeeecC-CCceeec-C
Q 003088 694 DMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRRRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDS-HGRRVSF-K 771 (849)
Q Consensus 694 ~~~~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~i~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~-~g~~~~~-~ 771 (849)
.+..+..........| . .....+++..+.++|+||||||+++++.++.|+++||++.++.. .|..... .
T Consensus 363 ~~~~l~~~~~~~~~~g-------~--~~~~~G~l~~A~~gil~IDEid~l~~~~q~~Ll~~le~~~i~i~~~g~~~~~~~ 433 (595)
T 3f9v_A 363 TAAGLTAAVVREKGTG-------E--YYLEAGALVLADGGIAVIDEIDKMRDEDRVAIHEAMEQQTVSIAKAGIVAKLNA 433 (595)
T ss_dssp TTTTSEEECSSGGGTS-------S--CSEEECHHHHHSSSEECCTTTTCCCSHHHHHHHHHHHSSSEEEESSSSEEEECC
T ss_pred ccccccceeeeccccc-------c--ccccCCeeEecCCCcEEeehhhhCCHhHhhhhHHHHhCCEEEEecCCcEEEecC
Confidence 1222211110000001 0 01112344455679999999999999999999999999998743 3444444 5
Q ss_pred CeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHH
Q 003088 772 NALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQ 842 (849)
Q Consensus 772 ~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~ 842 (849)
+++||+|+|+.... |.....- .+ .-.++++|++|||.++.+.++..++
T Consensus 434 ~~~vIaatNp~~G~----------~~~~~~~---~~----------ni~l~~aLl~RFDl~~~~~~~~~~e 481 (595)
T 3f9v_A 434 RAAVIAAGNPKFGR----------YISERPV---SD----------NINLPPTILSRFDLIFILKDQPGEQ 481 (595)
T ss_dssp CCEEEEEECCTTCC----------SCTTSCS---CT----------TTCSCSSSGGGCSCCEEECCTTHHH
T ss_pred ceEEEEEcCCcCCc----------cCcccCc---hh----------ccCCCHHHHhhCeEEEEeCCCCCHH
Confidence 89999999984211 1000000 00 0028899999999877777766544
No 127
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.40 E-value=7.1e-13 Score=150.36 Aligned_cols=143 Identities=22% Similarity=0.365 Sum_probs=99.6
Q ss_pred ccccccHHHH---HHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccc
Q 003088 629 KRVIGQDEAV---AAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVS 705 (849)
Q Consensus 629 ~~i~Gq~~~i---~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~ 705 (849)
+.++||++++ ..+...+..... .++||+||||||||++|++|++.+ +.+|+.+++....... +
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~~~---------~~vLL~GppGtGKTtlAr~ia~~~---~~~f~~l~a~~~~~~~-i- 91 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAGHL---------HSMILWGPPGTGKTTLAEVIARYA---NADVERISAVTSGVKE-I- 91 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHTCC---------CEEEEECSTTSSHHHHHHHHHHHT---TCEEEEEETTTCCHHH-H-
T ss_pred HHhCCcHHHHhchHHHHHHHHcCCC---------cEEEEECCCCCcHHHHHHHHHHHh---CCCeEEEEeccCCHHH-H-
Confidence 6799999999 778777776421 359999999999999999999986 5567777764321110 0
Q ss_pred cccCCCCCccccccCcchhHHH---HhCCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCC
Q 003088 706 KLIGSPPGYVGYEEGGLLTEAI---RRRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVG 782 (849)
Q Consensus 706 ~l~g~~~g~vg~~~~~~l~~~i---~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~ 782 (849)
...+..+. ....++||||||||.++...|+.|+..|+++. ++||++|+..
T Consensus 92 --------------r~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~~-------------v~lI~att~n 144 (447)
T 3pvs_A 92 --------------REAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT-------------ITFIGATTEN 144 (447)
T ss_dssp --------------HHHHHHHHHHHHTTCCEEEEEETTTCC------CCHHHHHTTS-------------CEEEEEESSC
T ss_pred --------------HHHHHHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcCc-------------eEEEecCCCC
Confidence 11111111 23457899999999999999999999999843 5677776543
Q ss_pred chhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHHHcccc
Q 003088 783 STTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQLP 847 (849)
Q Consensus 783 ~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~I~ 847 (849)
+. ..+.++|++|+. ++.|.|++.+++..|+
T Consensus 145 ~~----------------------------------~~l~~aL~sR~~-v~~l~~l~~edi~~il 174 (447)
T 3pvs_A 145 PS----------------------------------FELNSALLSRAR-VYLLKSLSTEDIEQVL 174 (447)
T ss_dssp GG----------------------------------GSSCHHHHTTEE-EEECCCCCHHHHHHHH
T ss_pred cc----------------------------------cccCHHHhCcee-EEeeCCcCHHHHHHHH
Confidence 21 017899999994 7889999999988776
No 128
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=99.38 E-value=4.2e-12 Score=168.76 Aligned_cols=144 Identities=15% Similarity=0.163 Sum_probs=94.6
Q ss_pred CCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhccccccchHHHHHHHHHHHHH----------
Q 003088 310 TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ---------- 379 (849)
Q Consensus 310 ~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~~~~~~g~~e~~l~~l~~~~~---------- 379 (849)
.+.++||+||||||||+++..+...+ .+..++.+++++.... ..+...+...++...
T Consensus 1303 ~~~pvLL~GptGtGKT~li~~~L~~l---------~~~~~~~infS~~Tta----~~l~~~~e~~~e~~~~~~~G~~~~p 1369 (3245)
T 3vkg_A 1303 EHRPLILCGPPGSGKTMTLTSTLRAF---------PDFEVVSLNFSSATTP----ELLLKTFDHHCEYKRTPSGETVLRP 1369 (3245)
T ss_dssp TTCCCEEESSTTSSHHHHHHHHGGGC---------TTEEEEEECCCTTCCH----HHHHHHHHHHEEEEECTTSCEEEEE
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHhC---------CCCceEEEEeeCCCCH----HHHHHHHhhcceEEeccCCCcccCC
Confidence 45789999999999998886554333 1345566666554321 111111111100000
Q ss_pred --hcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCC--------------CeEEEEccChHHHHHHhhccH
Q 003088 380 --KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG--------------ELQCIASTTQDEHRTQFEKDK 443 (849)
Q Consensus 380 --~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~--------------~i~vI~at~~~~~~~~~~~d~ 443 (849)
.++..|+||||++.-.. + +.++....++|+.+++.+ ++.+|+|+|++.......+++
T Consensus 1370 ~~~Gk~~VlFiDDiNmp~~--D-----~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~ 1442 (3245)
T 3vkg_A 1370 TQLGKWLVVFCDEINLPST--D-----KYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTH 1442 (3245)
T ss_dssp SSTTCEEEEEETTTTCCCC--C-----TTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCH
T ss_pred CcCCceEEEEecccCCCCc--c-----ccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCH
Confidence 12237999999996422 1 135667788888888732 367899998763223457899
Q ss_pred HHHhccccEEecCCCHHHHHHHHHHHHHHH
Q 003088 444 ALARRFQPVLISEPSQEDAVRILLGLREKY 473 (849)
Q Consensus 444 al~~Rf~~i~~~~ps~~e~~~iL~~~~~~~ 473 (849)
+|.|||..+.++.|+.++...|+..+...+
T Consensus 1443 Rf~r~F~vi~i~~ps~esL~~If~til~~~ 1472 (3245)
T 3vkg_A 1443 RFLRHAPILLVDFPSTSSLTQIYGTFNRAL 1472 (3245)
T ss_dssp HHHTTCCEEECCCCCHHHHHHHHHHHHHHH
T ss_pred HHHhhceEEEeCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999988766543
No 129
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.38 E-value=2.2e-12 Score=131.51 Aligned_cols=147 Identities=27% Similarity=0.394 Sum_probs=105.2
Q ss_pred ccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCC--CCceeEeecccccccccccc
Q 003088 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGS--ESSMLRLDMSEYMERHTVSK 706 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~--~~~~i~i~~~~~~~~~~~~~ 706 (849)
+.++|++..++.+...+... + ..+++|+||+|||||++|+.+++.+... ...++.++++.........
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~--------~-~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 86 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERK--------N-IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVR- 86 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTT--------C-CCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHH-
T ss_pred HHHcCcHHHHHHHHHHHhCC--------C-CCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHH-
Confidence 56899999999998887642 1 1249999999999999999999886332 2345666654432211000
Q ss_pred ccCCCCCccccccCcchhHHHH-----hCCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCC
Q 003088 707 LIGSPPGYVGYEEGGLLTEAIR-----RRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNV 781 (849)
Q Consensus 707 l~g~~~g~vg~~~~~~l~~~i~-----~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~ 781 (849)
..+..... ...+.+|||||+|.+++..++.|++.+++. ..++++|+++|.
T Consensus 87 --------------~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~-----------~~~~~~i~~~~~ 141 (226)
T 2chg_A 87 --------------HKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMY-----------SKSCRFILSCNY 141 (226)
T ss_dssp --------------HHHHHHHTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHT-----------TTTEEEEEEESC
T ss_pred --------------HHHHHHhcccCCCccCceEEEEeChhhcCHHHHHHHHHHHHhc-----------CCCCeEEEEeCC
Confidence 01111111 245689999999999999999999999872 246788999886
Q ss_pred CchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHHHcccc
Q 003088 782 GSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQLP 847 (849)
Q Consensus 782 ~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~I~ 847 (849)
.. .+.+.+.+|+. .+.|+|++.+++.+++
T Consensus 142 ~~------------------------------------~~~~~l~~r~~-~i~~~~~~~~~~~~~l 170 (226)
T 2chg_A 142 VS------------------------------------RIIEPIQSRCA-VFRFKPVPKEAMKKRL 170 (226)
T ss_dssp GG------------------------------------GSCHHHHTTSE-EEECCCCCHHHHHHHH
T ss_pred hh------------------------------------hcCHHHHHhCc-eeecCCCCHHHHHHHH
Confidence 31 16788999996 8999999999887765
No 130
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.38 E-value=1.3e-12 Score=142.49 Aligned_cols=156 Identities=17% Similarity=0.197 Sum_probs=113.2
Q ss_pred cCCHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCce
Q 003088 611 QITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSM 690 (849)
Q Consensus 611 ~~~~~~~~~~~~l~~~l~~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~ 690 (849)
...|.++.++..+ +.++|++++++.+...+... +....+|++||||||||++|+++++.+ +.++
T Consensus 13 ~~~~~~k~rP~~~-----~~ivg~~~~~~~l~~~l~~~--------~~~~~~L~~G~~G~GKT~la~~la~~l---~~~~ 76 (324)
T 3u61_B 13 EHILEQKYRPSTI-----DECILPAFDKETFKSITSKG--------KIPHIILHSPSPGTGKTTVAKALCHDV---NADM 76 (324)
T ss_dssp CSSHHHHSCCCST-----TTSCCCHHHHHHHHHHHHTT--------CCCSEEEECSSTTSSHHHHHHHHHHHT---TEEE
T ss_pred cchHHHhhCCCCH-----HHHhCcHHHHHHHHHHHHcC--------CCCeEEEeeCcCCCCHHHHHHHHHHHh---CCCE
Confidence 4556666655433 66999999999998888732 111237888999999999999999987 5568
Q ss_pred eEeeccccccccccccccCCCCCccccccCcchhHHHHhC----CCeEEEEeCccccC-HHHHHHHHHHhhcCeeecCCC
Q 003088 691 LRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRRR----PFTLLLLDEIEKAH-PDIFNILLQVFEDGHLTDSHG 765 (849)
Q Consensus 691 i~i~~~~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~i~~~----~~~vl~lDEid~l~-~~~~~~Ll~~le~g~~~~~~g 765 (849)
+.++++..... .. ...+.+..... .++||||||+|.++ .+.++.|++.+++.
T Consensus 77 ~~i~~~~~~~~-~i---------------~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~------- 133 (324)
T 3u61_B 77 MFVNGSDCKID-FV---------------RGPLTNFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAY------- 133 (324)
T ss_dssp EEEETTTCCHH-HH---------------HTHHHHHHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHH-------
T ss_pred EEEcccccCHH-HH---------------HHHHHHHHhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhC-------
Confidence 88887653211 00 01122222221 46899999999999 99999999999872
Q ss_pred ceeecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHHHcc
Q 003088 766 RRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQ 845 (849)
Q Consensus 766 ~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~ 845 (849)
..+++||+++|.... +.++|.+|| .++.|+|++.+++.+
T Consensus 134 ----~~~~~iI~~~n~~~~------------------------------------l~~~l~sR~-~~i~~~~~~~~e~~~ 172 (324)
T 3u61_B 134 ----SSNCSIIITANNIDG------------------------------------IIKPLQSRC-RVITFGQPTDEDKIE 172 (324)
T ss_dssp ----GGGCEEEEEESSGGG------------------------------------SCTTHHHHS-EEEECCCCCHHHHHH
T ss_pred ----CCCcEEEEEeCCccc------------------------------------cCHHHHhhC-cEEEeCCCCHHHHHH
Confidence 246889999997321 778999999 589999999888544
Q ss_pred c
Q 003088 846 L 846 (849)
Q Consensus 846 I 846 (849)
|
T Consensus 173 i 173 (324)
T 3u61_B 173 M 173 (324)
T ss_dssp H
T ss_pred H
Confidence 4
No 131
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.35 E-value=4.9e-12 Score=155.54 Aligned_cols=183 Identities=20% Similarity=0.254 Sum_probs=127.7
Q ss_pred CCccccHHHHHHHHHHHhcCC---------CCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhcc
Q 003088 290 DPVIGRETEIQRIIQILCRRT---------KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAG 360 (849)
Q Consensus 290 ~~iiG~~~~i~~l~~~l~~~~---------~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~~ 360 (849)
+.++|+++.++.+...+.+.. ..++||+||||||||++|++|++.+... +.+++.++++.+...
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~-------~~~~i~i~~~~~~~~ 630 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT-------EEAMIRIDMTEYMEK 630 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSS-------GGGEEEECTTTCCSS
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC-------CCcEEEEechhccch
Confidence 358999999999888774421 1378999999999999999999998654 345666666554321
Q ss_pred c----------cccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCC--------
Q 003088 361 A----------KERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-------- 422 (849)
Q Consensus 361 ~----------~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~-------- 422 (849)
. .+.|.-+ ...+...++...++||||||++.+ ..++++.|+.+++.+
T Consensus 631 ~~~s~l~g~~~~~~G~~~--~g~l~~~~~~~~~~vl~lDEi~~l-------------~~~~~~~Ll~~l~~~~~~~~~g~ 695 (854)
T 1qvr_A 631 HAVSRLIGAPPGYVGYEE--GGQLTEAVRRRPYSVILFDEIEKA-------------HPDVFNILLQILDDGRLTDSHGR 695 (854)
T ss_dssp GGGGGC----------------CHHHHHHHCSSEEEEESSGGGS-------------CHHHHHHHHHHHTTTEECCSSSC
T ss_pred hHHHHHcCCCCCCcCccc--cchHHHHHHhCCCeEEEEeccccc-------------CHHHHHHHHHHhccCceECCCCC
Confidence 0 0111111 123334445566789999999988 568899999999866
Q ss_pred -----CeEEEEccChH---------------HHHHH------hhccHHHHhccc-cEEecCCCHHHHHHHHHHHHHHHHh
Q 003088 423 -----ELQCIASTTQD---------------EHRTQ------FEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEA 475 (849)
Q Consensus 423 -----~i~vI~at~~~---------------~~~~~------~~~d~al~~Rf~-~i~~~~ps~~e~~~iL~~~~~~~~~ 475 (849)
++++|+|||.. +.... -...+.|.+||. .+.|.+|+.++...|+..++.++..
T Consensus 696 ~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~~~ 775 (854)
T 1qvr_A 696 TVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRA 775 (854)
T ss_dssp CEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHH
T ss_pred EeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 45699999962 11111 134688999995 6888889999999999987765543
Q ss_pred h-----cCCccCHHHHHHHHHhhh
Q 003088 476 H-----HNCKFTLEAINAAVHLSA 494 (849)
Q Consensus 476 ~-----~~~~i~~~~l~~~a~ls~ 494 (849)
. ..+.++++++..++..+.
T Consensus 776 ~~~~~~~~~~~~~~a~~~L~~~~~ 799 (854)
T 1qvr_A 776 RLAEKRISLELTEAAKDFLAERGY 799 (854)
T ss_dssp HHHTTTCEEEECHHHHHHHHHHHC
T ss_pred HHHhCCceEEECHHHHHHHHHcCC
Confidence 2 135799999998887643
No 132
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.35 E-value=1.1e-12 Score=125.56 Aligned_cols=135 Identities=15% Similarity=0.037 Sum_probs=90.9
Q ss_pred CccccHHHHHHHHHHHhc--CCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhccccccchHH
Q 003088 291 PVIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELE 368 (849)
Q Consensus 291 ~iiG~~~~i~~l~~~l~~--~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~~~~~~g~~e 368 (849)
+++|++..++.+.+.+.. ....+++|+||||||||++|+++++..... +.+++ +++..+....
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~-------~~~~v-~~~~~~~~~~------- 66 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNA-------QGEFV-YRELTPDNAP------- 66 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTT-------TSCCE-EEECCTTTSS-------
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCcc-------CCCEE-EECCCCCcch-------
Confidence 578999999998887743 566789999999999999999999876443 34455 6665544321
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhc--CCCeEEEEccChHHHH--HHhhccHH
Q 003088 369 ARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG--RGELQCIASTTQDEHR--TQFEKDKA 444 (849)
Q Consensus 369 ~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le--~~~i~vI~at~~~~~~--~~~~~d~a 444 (849)
.....+..+ .+++|||||+|.+ ..+.+..|..++. ..++++|++||.+... ..-...+.
T Consensus 67 -~~~~~~~~a---~~g~l~ldei~~l-------------~~~~q~~Ll~~l~~~~~~~~~I~~t~~~~~~~~~~~~~~~~ 129 (145)
T 3n70_A 67 -QLNDFIALA---QGGTLVLSHPEHL-------------TREQQYHLVQLQSQEHRPFRLIGIGDTSLVELAASNHIIAE 129 (145)
T ss_dssp -CHHHHHHHH---TTSCEEEECGGGS-------------CHHHHHHHHHHHHSSSCSSCEEEEESSCHHHHHHHSCCCHH
T ss_pred -hhhcHHHHc---CCcEEEEcChHHC-------------CHHHHHHHHHHHhhcCCCEEEEEECCcCHHHHHHcCCCCHH
Confidence 122333333 3469999999999 3456667776665 3458899999865321 11235577
Q ss_pred HHhcccc--EEecCC
Q 003088 445 LARRFQP--VLISEP 457 (849)
Q Consensus 445 l~~Rf~~--i~~~~p 457 (849)
|..||.. |.+|++
T Consensus 130 L~~rl~~~~i~lPpL 144 (145)
T 3n70_A 130 LYYCFAMTQIACLPL 144 (145)
T ss_dssp HHHHHHHHEEECCCC
T ss_pred HHHHhcCCEEeCCCC
Confidence 8888864 555543
No 133
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.35 E-value=2.5e-12 Score=139.90 Aligned_cols=147 Identities=26% Similarity=0.401 Sum_probs=106.1
Q ss_pred ccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCC--CceeEeecccccccccccc
Q 003088 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSE--SSMLRLDMSEYMERHTVSK 706 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~--~~~i~i~~~~~~~~~~~~~ 706 (849)
+.++|++.+++.+...+.... ..++||+||||||||++|+++++.+.+.. ..++.+++++........
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~~---------~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~- 94 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTGS---------MPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVIR- 94 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC---------CCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTTH-
T ss_pred HHhhCCHHHHHHHHHHHHcCC---------CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHHHH-
Confidence 569999999999988876531 12499999999999999999999874332 235666665432110000
Q ss_pred ccCCCCCccccccCcchhHHHH-----hCCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCC
Q 003088 707 LIGSPPGYVGYEEGGLLTEAIR-----RRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNV 781 (849)
Q Consensus 707 l~g~~~g~vg~~~~~~l~~~i~-----~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~ 781 (849)
..+.+... ...++||||||+|.+++..++.|++.+++. ..+++||+++|.
T Consensus 95 --------------~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~-----------~~~~~~i~~~~~ 149 (327)
T 1iqp_A 95 --------------EKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMF-----------SSNVRFILSCNY 149 (327)
T ss_dssp --------------HHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHT-----------TTTEEEEEEESC
T ss_pred --------------HHHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhc-----------CCCCeEEEEeCC
Confidence 01111111 145689999999999999999999999872 246789998886
Q ss_pred CchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHHHcccc
Q 003088 782 GSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQLP 847 (849)
Q Consensus 782 ~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~I~ 847 (849)
... +.+.+.+|+. .+.|+|++.+++.+++
T Consensus 150 ~~~------------------------------------l~~~l~sr~~-~~~~~~l~~~~~~~~l 178 (327)
T 1iqp_A 150 SSK------------------------------------IIEPIQSRCA-IFRFRPLRDEDIAKRL 178 (327)
T ss_dssp GGG------------------------------------SCHHHHHTEE-EEECCCCCHHHHHHHH
T ss_pred ccc------------------------------------cCHHHHhhCc-EEEecCCCHHHHHHHH
Confidence 321 6788999995 8899999999887765
No 134
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.34 E-value=1.2e-12 Score=130.13 Aligned_cols=156 Identities=21% Similarity=0.269 Sum_probs=105.5
Q ss_pred hccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcC-------CCCceeEeecccccc
Q 003088 628 KKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFG-------SESSMLRLDMSEYME 700 (849)
Q Consensus 628 ~~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~-------~~~~~i~i~~~~~~~ 700 (849)
.+.++|+++.++.+...+... ...+++|+||+|||||++|+.+++.+.. .+.+++.+++..+..
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~---------~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (195)
T 1jbk_A 21 LDPVIGRDEEIRRTIQVLQRR---------TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVA 91 (195)
T ss_dssp SCCCCSCHHHHHHHHHHHTSS---------SSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHT
T ss_pred ccccccchHHHHHHHHHHhcC---------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhc
Confidence 367999999998887776431 1235999999999999999999998743 245677777765432
Q ss_pred ccccccccCCCCCccccccCcchhHH---H-HhCCCeEEEEeCccccC--------HHHHHHHHHHhhcCeeecCCCcee
Q 003088 701 RHTVSKLIGSPPGYVGYEEGGLLTEA---I-RRRPFTLLLLDEIEKAH--------PDIFNILLQVFEDGHLTDSHGRRV 768 (849)
Q Consensus 701 ~~~~~~l~g~~~g~vg~~~~~~l~~~---i-~~~~~~vl~lDEid~l~--------~~~~~~Ll~~le~g~~~~~~g~~~ 768 (849)
.. .+.|... ..+... + +...+.||||||+|.+. ..+++.|...++.+
T Consensus 92 ~~----------~~~~~~~-~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~~---------- 150 (195)
T 1jbk_A 92 GA----------KYRGEFE-ERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARG---------- 150 (195)
T ss_dssp TT----------CSHHHHH-HHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHTT----------
T ss_pred cC----------CccccHH-HHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhccC----------
Confidence 10 1111111 111222 2 23446799999999995 34578888887652
Q ss_pred ecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHHHccccC
Q 003088 769 SFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQLPL 848 (849)
Q Consensus 769 ~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~I~~ 848 (849)
++++|+++|..... . .-.+++.|.+||+ .+.|.+++.+++.+|++
T Consensus 151 ---~~~~i~~~~~~~~~--~-----------------------------~~~~~~~l~~r~~-~i~~~~p~~~~~~~il~ 195 (195)
T 1jbk_A 151 ---ELHCVGATTLDEYR--Q-----------------------------YIEKDAALERRFQ-KVFVAEPSVEDTIAILR 195 (195)
T ss_dssp ---SCCEEEEECHHHHH--H-----------------------------HTTTCHHHHTTEE-EEECCCCCHHHHHTTCC
T ss_pred ---CeEEEEeCCHHHHH--H-----------------------------HHhcCHHHHHHhc-eeecCCCCHHHHHHHhC
Confidence 46788888752110 0 0015799999997 78999999999999875
No 135
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.33 E-value=1.4e-12 Score=154.30 Aligned_cols=166 Identities=21% Similarity=0.243 Sum_probs=107.9
Q ss_pred ccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeecccccc--------
Q 003088 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYME-------- 700 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~-------- 700 (849)
+.++|++.+++.+..++... .+++|+||||||||++|++|+..+.......+.+.+.....
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g-----------~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~~ 109 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK-----------RHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTV 109 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT-----------CCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEEE
T ss_pred ceEECchhhHhhccccccCC-----------CEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEEE
Confidence 56899999998888777642 14999999999999999999998754332333332221110
Q ss_pred ------------------------------------------------------ccccccccCCC-------CCcccccc
Q 003088 701 ------------------------------------------------------RHTVSKLIGSP-------PGYVGYEE 719 (849)
Q Consensus 701 ------------------------------------------------------~~~~~~l~g~~-------~g~vg~~~ 719 (849)
......++|.- .++.+-..
T Consensus 110 p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~~g~~~~g~~ 189 (604)
T 3k1j_A 110 PACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQSGGLGTPAH 189 (604)
T ss_dssp ETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC----CCCCGG
T ss_pred ecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhhcCCcccccc
Confidence 01111233311 00000000
Q ss_pred CcchhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCC----------ceeecCCeEEEEecCCCchhhhcc
Q 003088 720 GGLLTEAIRRRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHG----------RRVSFKNALIVMTSNVGSTTIAKG 789 (849)
Q Consensus 720 ~~~l~~~i~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g----------~~~~~~~~~iI~tsn~~~~~l~~~ 789 (849)
.......+..+.+++|||||++.+++.+|+.|+++|+++.+...++ ......+++||+++|...
T Consensus 190 ~~i~~g~~~~a~~gvL~LDEi~~l~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~~------ 263 (604)
T 3k1j_A 190 ERVEPGMIHRAHKGVLFIDEIATLSLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDT------ 263 (604)
T ss_dssp GGEECCHHHHTTTSEEEETTGGGSCHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHHH------
T ss_pred ccccCceeeecCCCEEEEechhhCCHHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHHH------
Confidence 1112335566778999999999999999999999999999876432 122235899999999631
Q ss_pred cCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccc---cEEEcCCCC
Q 003088 790 RHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRID---EVVVFRSLE 839 (849)
Q Consensus 790 ~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d---~~i~f~pl~ 839 (849)
...|+|+|++||+ ..+.|++..
T Consensus 264 ----------------------------~~~l~~~l~~R~~v~~i~i~l~~~~ 288 (604)
T 3k1j_A 264 ----------------------------VDKMHPALRSRIRGYGYEVYMRTTM 288 (604)
T ss_dssp ----------------------------HHHSCHHHHHHHHHHSEEEECCSEE
T ss_pred ----------------------------HhhcCHHHHHHhhccceEeeccccc
Confidence 1128999999996 466766543
No 136
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.32 E-value=3.5e-12 Score=138.23 Aligned_cols=147 Identities=27% Similarity=0.410 Sum_probs=105.7
Q ss_pred ccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCC--CceeEeecccccccccccc
Q 003088 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSE--SSMLRLDMSEYMERHTVSK 706 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~--~~~i~i~~~~~~~~~~~~~ 706 (849)
+.++|++.+++.+...+... . ..++||+||||||||++|+++++.+.+.. .+++.++++........
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~-------~--~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-- 85 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERK-------N--IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVV-- 85 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTT-------C--CCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTTTS--
T ss_pred HHHhCCHHHHHHHHHHHhCC-------C--CCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChHHH--
Confidence 56899999998887666431 1 12499999999999999999999875432 34667776543211000
Q ss_pred ccCCCCCccccccCcchhHHHH-----hCCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCC
Q 003088 707 LIGSPPGYVGYEEGGLLTEAIR-----RRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNV 781 (849)
Q Consensus 707 l~g~~~g~vg~~~~~~l~~~i~-----~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~ 781 (849)
...+..... ...+.||||||+|.++...++.|++.+++ ...+++||+++|.
T Consensus 86 -------------~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~-----------~~~~~~~i~~~~~ 141 (319)
T 2chq_A 86 -------------RHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEM-----------YSKSCRFILSCNY 141 (319)
T ss_dssp -------------SHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSS-----------SSSSEEEEEEESC
T ss_pred -------------HHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHh-----------cCCCCeEEEEeCC
Confidence 111122211 13468999999999999999999999987 2347889999886
Q ss_pred CchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHHHcccc
Q 003088 782 GSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQLP 847 (849)
Q Consensus 782 ~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~I~ 847 (849)
... +.+.+.+|+ ..+.|.|++.+++.+++
T Consensus 142 ~~~------------------------------------l~~~l~sr~-~~i~~~~~~~~~~~~~l 170 (319)
T 2chq_A 142 VSR------------------------------------IIEPIQSRC-AVFRFKPVPKEAMKKRL 170 (319)
T ss_dssp GGG------------------------------------SCHHHHTTC-EEEECCCCCHHHHHHHH
T ss_pred hhh------------------------------------cchHHHhhC-eEEEecCCCHHHHHHHH
Confidence 321 678999999 48999999998887765
No 137
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.32 E-value=1.5e-11 Score=145.33 Aligned_cols=221 Identities=21% Similarity=0.269 Sum_probs=139.7
Q ss_pred HHHHhhcCCCCccccHHHHHHHHHHHhcCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCcccc-------CCeEEEee
Q 003088 281 TARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLL-------SKRIMSLD 353 (849)
Q Consensus 281 ~~~~~~~~l~~iiG~~~~i~~l~~~l~~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~-------~~~~~~l~ 353 (849)
..+++|..+++++|++..++.+...+... .+++|+||||||||++|++|+..+.......... ..+.+..-
T Consensus 32 ~~~~rp~~l~~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~~ 109 (604)
T 3k1j_A 32 EIEVPEKLIDQVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTV 109 (604)
T ss_dssp GSCCCSSHHHHCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEEE
T ss_pred cccccccccceEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEEE
Confidence 34677888899999999998888777654 5999999999999999999999874322110000 00000000
Q ss_pred -hhh---------------------------------h------hccccccchHHHHHHHHHH-----------------
Q 003088 354 -MGL---------------------------------L------MAGAKERGELEARVTTLIS----------------- 376 (849)
Q Consensus 354 -~~~---------------------------------~------~~~~~~~g~~e~~l~~l~~----------------- 376 (849)
.+. + ..+.....+.......++.
T Consensus 110 p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~~g~~~~g~~ 189 (604)
T 3k1j_A 110 PACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQSGGLGTPAH 189 (604)
T ss_dssp ETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC----CCCCGG
T ss_pred ecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhhcCCcccccc
Confidence 000 0 0000000000000011111
Q ss_pred ------HHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCC-----------------------CeEEE
Q 003088 377 ------EIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-----------------------ELQCI 427 (849)
Q Consensus 377 ------~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~-----------------------~i~vI 427 (849)
.+....+++|||||++.+ ...+++.|+..|+.+ ++++|
T Consensus 190 ~~i~~g~~~~a~~gvL~LDEi~~l-------------~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI 256 (604)
T 3k1j_A 190 ERVEPGMIHRAHKGVLFIDEIATL-------------SLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLV 256 (604)
T ss_dssp GGEECCHHHHTTTSEEEETTGGGS-------------CHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEE
T ss_pred ccccCceeeecCCCEEEEechhhC-------------CHHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEE
Confidence 111234569999999999 456788888888733 45799
Q ss_pred EccChHHHHHHhhccHHHHhccc----cEEecCC---CHHHHHHHHHHHHHHHHhh-cCCccCHHHHHHHHHhhhccccc
Q 003088 428 ASTTQDEHRTQFEKDKALARRFQ----PVLISEP---SQEDAVRILLGLREKYEAH-HNCKFTLEAINAAVHLSARYISD 499 (849)
Q Consensus 428 ~at~~~~~~~~~~~d~al~~Rf~----~i~~~~p---s~~e~~~iL~~~~~~~~~~-~~~~i~~~~l~~~a~ls~~~~~~ 499 (849)
++||...+ ..++++|++||. .+.|+.. +.+....+++.+.+.+... ....++++++..+...+.++..+
T Consensus 257 ~atn~~~~---~~l~~~l~~R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~ 333 (604)
T 3k1j_A 257 AAGNLDTV---DKMHPALRSRIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGR 333 (604)
T ss_dssp EEECHHHH---HHSCHHHHHHHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCS
T ss_pred EecCHHHH---hhcCHHHHHHhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhhcc
Confidence 99998742 368999999996 2444332 5667777777666655432 34589999999999887766555
Q ss_pred Cc----chhhHHHHHHHHhhHHHH
Q 003088 500 RY----LPDKAIDLVDEAGSRAHI 519 (849)
Q Consensus 500 r~----~p~~ai~ll~~a~~~~~~ 519 (849)
+. .+..+.+++..|...+..
T Consensus 334 r~~l~~~~R~l~~llr~A~~~A~~ 357 (604)
T 3k1j_A 334 KGHLTLRLRDLGGIVRAAGDIAVK 357 (604)
T ss_dssp TTEEECCHHHHHHHHHHHHHHHHH
T ss_pred ccccccCHHHHHHHHHHHHHHHHh
Confidence 54 467888888888776654
No 138
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.32 E-value=9.6e-12 Score=136.21 Aligned_cols=161 Identities=11% Similarity=0.063 Sum_probs=103.0
Q ss_pred ccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCce--eEee---cccccccccc-
Q 003088 631 VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSM--LRLD---MSEYMERHTV- 704 (849)
Q Consensus 631 i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~--i~i~---~~~~~~~~~~- 704 (849)
+.++.++++.+..++...+ ....+||+||+|+|||++|+++++.+.+....- ..-. |..+......
T Consensus 4 ~pw~~~~~~~l~~~i~~~~--------~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d 75 (334)
T 1a5t_A 4 YPWLRPDFEKLVASYQAGR--------GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD 75 (334)
T ss_dssp CGGGHHHHHHHHHHHHTTC--------CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT
T ss_pred CCchHHHHHHHHHHHHcCC--------cceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC
Confidence 4678888888888776432 112499999999999999999999985432110 0000 1111000000
Q ss_pred -ccccCCC-CCccccccCcchhHHHHh----CCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEe
Q 003088 705 -SKLIGSP-PGYVGYEEGGLLTEAIRR----RPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMT 778 (849)
Q Consensus 705 -~~l~g~~-~g~vg~~~~~~l~~~i~~----~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~t 778 (849)
..+.+.. ...++.++...+.+.+.. ..+.|++|||+|.++.+.+|.|++.||+ +..+++||++
T Consensus 76 ~~~~~~~~~~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEe-----------p~~~~~~Il~ 144 (334)
T 1a5t_A 76 YYTLAPEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEE-----------PPAETWFFLA 144 (334)
T ss_dssp EEEECCCTTCSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTS-----------CCTTEEEEEE
T ss_pred EEEEeccccCCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcC-----------CCCCeEEEEE
Confidence 0111100 011222211122223322 2368999999999999999999999998 2357889998
Q ss_pred cCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHHHcccc
Q 003088 779 SNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQLP 847 (849)
Q Consensus 779 sn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~I~ 847 (849)
||... .+.|.+.+|+ ..+.|.|++.+++.+++
T Consensus 145 t~~~~------------------------------------~l~~ti~SRc-~~~~~~~~~~~~~~~~L 176 (334)
T 1a5t_A 145 TREPE------------------------------------RLLATLRSRC-RLHYLAPPPEQYAVTWL 176 (334)
T ss_dssp ESCGG------------------------------------GSCHHHHTTS-EEEECCCCCHHHHHHHH
T ss_pred eCChH------------------------------------hCcHHHhhcc-eeeeCCCCCHHHHHHHH
Confidence 88521 1779999999 68999999999887764
No 139
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.32 E-value=7.4e-13 Score=140.71 Aligned_cols=161 Identities=17% Similarity=0.267 Sum_probs=98.3
Q ss_pred hccccccHHHHHHHHHH----HHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccc
Q 003088 628 KKRVIGQDEAVAAISRA----VKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHT 703 (849)
Q Consensus 628 ~~~i~Gq~~~i~~l~~~----l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~ 703 (849)
...++|+++.++.+... ........ ..+..++||+||||||||++|+++|+.+ +.+++.+++++.
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l~~~l~~~~---~~~~~~vLl~G~~GtGKT~la~~ia~~~---~~~~~~i~~~~~----- 100 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELLVQQTKNSD---RTPLVSVLLEGPPHSGKTALAAKIAEES---NFPFIKICSPDK----- 100 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHHHHHHHHCS---SCSEEEEEEECSTTSSHHHHHHHHHHHH---TCSEEEEECGGG-----
T ss_pred hcCCCCccHHHHHHHHHHHHHHHHHhccC---CCCCeEEEEECCCCCcHHHHHHHHHHHh---CCCEEEEeCHHH-----
Confidence 35678888777766653 22221111 2334569999999999999999999986 567898887642
Q ss_pred cccccCCCCCccccccCcchhHHHHhCCCeEEEEeCcccc----------CHHHHHHHHHHhhcCeeecCCCceeecCCe
Q 003088 704 VSKLIGSPPGYVGYEEGGLLTEAIRRRPFTLLLLDEIEKA----------HPDIFNILLQVFEDGHLTDSHGRRVSFKNA 773 (849)
Q Consensus 704 ~~~l~g~~~g~vg~~~~~~l~~~i~~~~~~vl~lDEid~l----------~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~ 773 (849)
++|...+. .......+.+......++||||||||.+ ...+++.|+..++... ....++
T Consensus 101 ---~~g~~~~~-~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~--------~~~~~~ 168 (272)
T 1d2n_A 101 ---MIGFSETA-KCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAP--------PQGRKL 168 (272)
T ss_dssp ---CTTCCHHH-HHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCC--------STTCEE
T ss_pred ---hcCCchHH-HHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCcc--------CCCCCE
Confidence 23321000 0000011222223356799999999997 4556677777665411 012367
Q ss_pred EEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCCh-HHhhccccEEEcCCCCH-HHHcccc
Q 003088 774 LIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRP-ELLNRIDEVVVFRSLEK-AQVCQLP 847 (849)
Q Consensus 774 ~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~p-ell~R~d~~i~f~pl~~-~~~~~I~ 847 (849)
+||+|||.... +++ .+.+||+..+.|+|++. +++..|+
T Consensus 169 ~ii~ttn~~~~------------------------------------l~~~~l~~rf~~~i~~p~l~~r~~i~~i~ 208 (272)
T 1d2n_A 169 LIIGTTSRKDV------------------------------------LQEMEMLNAFSTTIHVPNIATGEQLLEAL 208 (272)
T ss_dssp EEEEEESCHHH------------------------------------HHHTTCTTTSSEEEECCCEEEHHHHHHHH
T ss_pred EEEEecCChhh------------------------------------cchhhhhcccceEEcCCCccHHHHHHHHH
Confidence 88999997311 122 45678888888888876 6665553
No 140
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.30 E-value=7.1e-13 Score=126.57 Aligned_cols=129 Identities=16% Similarity=0.183 Sum_probs=87.2
Q ss_pred CccccHHHHHHHHHHHhc--CCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhccccccchHH
Q 003088 291 PVIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELE 368 (849)
Q Consensus 291 ~iiG~~~~i~~l~~~l~~--~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~~~~~~g~~e 368 (849)
+++|++..++++.+.+.. ....+++|+||||||||++|++++... . +++.+++..+....
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~----------~-~~~~~~~~~~~~~~------- 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG----------T-PWVSPARVEYLIDM------- 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT----------S-CEECCSSTTHHHHC-------
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC----------C-CeEEechhhCChHh-------
Confidence 578999999888887643 566789999999999999999998765 2 56666665443211
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcC---CCeEEEEccChHHHH-HHhhccHH
Q 003088 369 ARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR---GELQCIASTTQDEHR-TQFEKDKA 444 (849)
Q Consensus 369 ~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~---~~i~vI~at~~~~~~-~~~~~d~a 444 (849)
...+++. ..+++|||||++.+ ..+.+..|..++++ .++++|++||.+... ..- .++.
T Consensus 67 --~~~~~~~---a~~~~l~lDei~~l-------------~~~~q~~Ll~~l~~~~~~~~~iI~~tn~~~~~~~~~-~~~~ 127 (143)
T 3co5_A 67 --PMELLQK---AEGGVLYVGDIAQY-------------SRNIQTGITFIIGKAERCRVRVIASCSYAAGSDGIS-CEEK 127 (143)
T ss_dssp --HHHHHHH---TTTSEEEEEECTTC-------------CHHHHHHHHHHHHHHTTTTCEEEEEEEECTTTC--C-HHHH
T ss_pred --hhhHHHh---CCCCeEEEeChHHC-------------CHHHHHHHHHHHHhCCCCCEEEEEecCCCHHHHHhC-ccHH
Confidence 2334443 33569999999999 34567777777764 458999999865311 101 5577
Q ss_pred HHhcccc--EEecC
Q 003088 445 LARRFQP--VLISE 456 (849)
Q Consensus 445 l~~Rf~~--i~~~~ 456 (849)
|..||.. |.+|+
T Consensus 128 L~~rl~~~~i~lPp 141 (143)
T 3co5_A 128 LAGLFSESVVRIPP 141 (143)
T ss_dssp HHHHSSSEEEEECC
T ss_pred HHHHhcCcEEeCCC
Confidence 7888875 55554
No 141
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.30 E-value=3.7e-12 Score=138.27 Aligned_cols=161 Identities=17% Similarity=0.220 Sum_probs=110.3
Q ss_pred ccCCHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCC--
Q 003088 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSE-- 687 (849)
Q Consensus 610 ~~~~~~~~~~~~~l~~~l~~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~-- 687 (849)
....|.++..+.. .+.++|++.+++.+...+... ++ .+++|+||+|+|||++|+.+++.+.+..
T Consensus 7 ~~~~~~~~~~p~~-----~~~~~g~~~~~~~l~~~l~~~--------~~-~~~ll~G~~G~GKt~la~~l~~~l~~~~~~ 72 (323)
T 1sxj_B 7 LQLPWVEKYRPQV-----LSDIVGNKETIDRLQQIAKDG--------NM-PHMIISGMPGIGKTTSVHCLAHELLGRSYA 72 (323)
T ss_dssp CCCCHHHHTCCSS-----GGGCCSCTHHHHHHHHHHHSC--------CC-CCEEEECSTTSSHHHHHHHHHHHHHGGGHH
T ss_pred ccCcHHHhcCCCC-----HHHHHCCHHHHHHHHHHHHcC--------CC-CeEEEECcCCCCHHHHHHHHHHHhcCCccc
Confidence 3445555544433 256999999999998887531 11 2499999999999999999999874321
Q ss_pred CceeEeeccccccccccccccCCCCCccccccCcchhHHHH------hCCCeEEEEeCccccCHHHHHHHHHHhhcCeee
Q 003088 688 SSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIR------RRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLT 761 (849)
Q Consensus 688 ~~~i~i~~~~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~i~------~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~ 761 (849)
..++.++++.......+ ...+..... ...+.||||||+|.++...++.|++.+++.
T Consensus 73 ~~~~~~~~~~~~~~~~i---------------~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~--- 134 (323)
T 1sxj_B 73 DGVLELNASDDRGIDVV---------------RNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELY--- 134 (323)
T ss_dssp HHEEEECTTSCCSHHHH---------------HTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHT---
T ss_pred CCEEEecCccccChHHH---------------HHHHHHHHhccccCCCCCceEEEEECcccCCHHHHHHHHHHHhcc---
Confidence 23555655432110000 011111110 223689999999999999999999999872
Q ss_pred cCCCceeecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHH
Q 003088 762 DSHGRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKA 841 (849)
Q Consensus 762 ~~~g~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~ 841 (849)
..+++||++||... .+.+.+.+|+ ..+.|.|++.+
T Consensus 135 --------~~~~~~il~~~~~~------------------------------------~l~~~l~sr~-~~i~~~~~~~~ 169 (323)
T 1sxj_B 135 --------SNSTRFAFACNQSN------------------------------------KIIEPLQSQC-AILRYSKLSDE 169 (323)
T ss_dssp --------TTTEEEEEEESCGG------------------------------------GSCHHHHTTS-EEEECCCCCHH
T ss_pred --------CCCceEEEEeCChh------------------------------------hchhHHHhhc-eEEeecCCCHH
Confidence 24678888887521 1678899998 48999999999
Q ss_pred HHcccc
Q 003088 842 QVCQLP 847 (849)
Q Consensus 842 ~~~~I~ 847 (849)
++.+++
T Consensus 170 ~~~~~l 175 (323)
T 1sxj_B 170 DVLKRL 175 (323)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887765
No 142
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=99.30 E-value=2.3e-10 Score=152.45 Aligned_cols=375 Identities=16% Similarity=0.184 Sum_probs=199.4
Q ss_pred CCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcc
Q 003088 313 NPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVH 392 (849)
Q Consensus 313 niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~ 392 (849)
+..+.||+|||||.+++.+|+.+ +..++.++++.-+.. ..+.+++..+... ++..++||++
T Consensus 606 gg~~~GPaGtGKTet~k~La~~l----------gr~~~vfnC~~~~d~--------~~~g~i~~G~~~~-GaW~cfDEfN 666 (3245)
T 3vkg_A 606 GGNPFGPAGTGKTETVKALGSQL----------GRFVLVFCCDEGFDL--------QAMSRIFVGLCQC-GAWGCFDEFN 666 (3245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT----------TCCEEEEECSSCCCH--------HHHHHHHHHHHHH-TCEEEEETTT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHh----------CCeEEEEeCCCCCCH--------HHHHHHHhhHhhc-CcEEEehhhh
Confidence 45799999999999999999999 777787777543311 1244555555444 5799999999
Q ss_pred hhhhCCCCCCCCCCccHHHHHHHhhhh----------------c-------CCCeEEEEccChHHHHHHhhccHHHHhcc
Q 003088 393 TLIGSGTVGRGNKGTGLDISNLLKPSL----------------G-------RGELQCIASTTQDEHRTQFEKDKALARRF 449 (849)
Q Consensus 393 ~l~~~~~~~~~~~~~~~~~~~~L~~~l----------------e-------~~~i~vI~at~~~~~~~~~~~d~al~~Rf 449 (849)
++ ..++...+...+ + +..+.+++|+|+ .|....++...|+.||
T Consensus 667 rl-------------~~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNp-gY~gr~eLP~nLk~lF 732 (3245)
T 3vkg_A 667 RL-------------EERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNP-GYAGRSNLPDNLKKLF 732 (3245)
T ss_dssp SS-------------CHHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCC-CGGGCCCSCHHHHTTE
T ss_pred cC-------------CHHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCC-CccCcccChHHHHhhc
Confidence 98 233333222111 1 123567888876 6877789999999999
Q ss_pred ccEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHH---HHHHHHHhhhcccccC-c--chhhHH-HHHHHHhhHHHHhhh
Q 003088 450 QPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLE---AINAAVHLSARYISDR-Y--LPDKAI-DLVDEAGSRAHIELF 522 (849)
Q Consensus 450 ~~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~---~l~~~a~ls~~~~~~r-~--~p~~ai-~ll~~a~~~~~~~~~ 522 (849)
..|.+..|+.+...+|+-. ..|+.-... -+..+.+++..-+... + +.-.|+ .+|..|++..+....
T Consensus 733 r~v~m~~Pd~~~i~ei~L~-------s~Gf~~a~~La~k~~~~~~l~~e~LS~Q~HYDfGLRalKsVL~~AG~lkr~~~~ 805 (3245)
T 3vkg_A 733 RSMAMIKPDREMIAQVMLY-------SQGFKTAEVLAGKIVPLFKLCQEQLSAQSHYDFGLRALKSVLVSAGGIKRKCQP 805 (3245)
T ss_dssp EEEECCSCCHHHHHHHHHH-------TTTCSCHHHHHHHHHHHHHHHHHSSCCCTTCCCSHHHHHHHHHHHHHHHHSCCC
T ss_pred EEEEEeCCCHHHHHHHHHH-------HcccchHHHHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHhhhh
Confidence 9999999999988888632 223322211 1223334443333221 1 222333 445555443332110
Q ss_pred hc----hhh--hhhhhcCCCCchHHHHHHHHHHhHHHHHhcccccchhhhccCCcchhHHhccCCCCCCCCCCCccCHhH
Q 003088 523 KR----KKE--QQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDD 596 (849)
Q Consensus 523 ~~----~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 596 (849)
.. +.. ...........+...-++++.... -.....+|
T Consensus 806 ~~~~~~~~~~~~~~~~~~~~~~E~~illralrd~n-------------------------------------lpKl~~~D 848 (3245)
T 3vkg_A 806 PQLPPITDAESKTKADQIYCQYEIGVLLNSINDTM-------------------------------------IPKLVADD 848 (3245)
T ss_dssp C------CHHHHHHHHHHHHHHHHHHHHHHHHHTT-------------------------------------TTTSCGGG
T ss_pred hcccccccccccccccccccccHHHHHHHHHHHhc-------------------------------------cCCCchhh
Confidence 00 000 000000000000000011111110 01112222
Q ss_pred ---HHHHHHhHh-CCCcccCCHHHHHHHHHHHHHH-hccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCc
Q 003088 597 ---IAAVASLWS-GIPVQQITADERMLLVGLEEQL-KKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVG 671 (849)
Q Consensus 597 ---i~~~~~~~~-g~~~~~~~~~~~~~~~~l~~~l-~~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtG 671 (849)
+..+++..+ |+........+ ....+.+.. ...+.-.+..+..+....+..... ..++++||||+|
T Consensus 849 ~plF~~li~DlFPgv~~~~~~~~~--l~~ai~~~~~~~~L~~~~~~v~KviQLye~~~vR--------hGvmlVGp~gsG 918 (3245)
T 3vkg_A 849 IPLIQSLLLDVFPGSQLQPIQMDQ--LRKKIQEIAKQRHLVTKQEWVEKILQLHQILNIN--------HGVMMVGPSGGG 918 (3245)
T ss_dssp HHHHHHHHHHHSTTCCCCCCCCHH--HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTC--------SEEEEECSSSSS
T ss_pred HHHHHHHHHHhCCCCCCCCCchHH--HHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhe--------eeEEEECCCCCC
Confidence 233333332 33222222111 111222222 233455556666555544443111 239999999999
Q ss_pred hHHHHHHHHHHhcCCC---CceeEeeccccccccccccccCCCCCccccccCcchhHHHHhC---------CCeEEEEeC
Q 003088 672 KTELAKSLAACYFGSE---SSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRRR---------PFTLLLLDE 739 (849)
Q Consensus 672 Kt~lA~~la~~l~~~~---~~~i~i~~~~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~i~~~---------~~~vl~lDE 739 (849)
||++-+.|++.+..-. .....+|...+ +...|+|.-.....+=..|.++..+++. ....|+||-
T Consensus 919 KTt~~~~L~~al~~l~~~~~~~~~iNPKai----t~~eLyG~~d~~T~EW~DGvls~i~R~~~~~~~~~~~~~~WIvfDG 994 (3245)
T 3vkg_A 919 KTTSWEVYLEAIEQVDNIKSEAHVMDPKAI----TKDQLFGSLDLTTREWTDGLFTATLRRIIDNVRGESTKRHWIIFDG 994 (3245)
T ss_dssp HHHHHHHHHHHHTTTTTCEEEEEEECTTTS----CHHHHHEEECTTTCCEEECHHHHHHHHHHTTSSSGGGEEEEEEEES
T ss_pred HHHHHHHHHHHHHHhhCCCceEEEECCCCC----chhhhceeecCCCCeeeccHHHHHHHHHHhcccCCCCCceEEEECC
Confidence 9999999999874321 12233444333 2345676422111111136777776652 135999993
Q ss_pred ccccCHHHHHHHHHHhhcCe-eecCCCceeecC-CeEEEEecC
Q 003088 740 IEKAHPDIFNILLQVFEDGH-LTDSHGRRVSFK-NALIVMTSN 780 (849)
Q Consensus 740 id~l~~~~~~~Ll~~le~g~-~~~~~g~~~~~~-~~~iI~tsn 780 (849)
-.++...+-|-.+||+.+ ++-..|..+..+ ++.+|+-..
T Consensus 995 --pVDa~WIEnlNsVLDDNK~LtL~nGErI~l~~~~~liFEv~ 1035 (3245)
T 3vkg_A 995 --DVDPEWVENLNSLLDDNKLLTLPNGERLALPNNVRVMFEVQ 1035 (3245)
T ss_dssp --CCCHHHHTTTHHHHSSSCEECCTTSCCEECCTTEEEEEEES
T ss_pred --CCCHHHHHHHHHHhcCCCeeecCCCCeeecCCCCEEEEEec
Confidence 456777788888887655 677788888775 899998443
No 143
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.29 E-value=5.5e-12 Score=135.81 Aligned_cols=141 Identities=16% Similarity=0.244 Sum_probs=98.1
Q ss_pred ccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhc--C-CCCceeEeeccccccccccccccC
Q 003088 633 GQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYF--G-SESSMLRLDMSEYMERHTVSKLIG 709 (849)
Q Consensus 633 Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~--~-~~~~~i~i~~~~~~~~~~~~~l~g 709 (849)
||+++++.+...+...+ ..++||+||||+|||++|+++++... . ....++.++.+.
T Consensus 1 g~~~~~~~L~~~i~~~~---------~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~------------ 59 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE---------GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG------------ 59 (305)
T ss_dssp ---CHHHHHHHHHHTCS---------SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS------------
T ss_pred ChHHHHHHHHHHHHCCC---------CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc------------
Confidence 78888988888887532 23599999999999999999998531 1 122344444321
Q ss_pred CCCCccccccCcchhHHHHhCC----CeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCchh
Q 003088 710 SPPGYVGYEEGGLLTEAIRRRP----FTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTT 785 (849)
Q Consensus 710 ~~~g~vg~~~~~~l~~~i~~~~----~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~ 785 (849)
...+.++...+.+.+...| +.|+||||+|.++...+|.|++.||+ +..+++||++||....
T Consensus 60 ---~~~~id~ir~li~~~~~~p~~~~~kvviIdead~lt~~a~naLLk~LEe-----------p~~~t~fIl~t~~~~k- 124 (305)
T 2gno_A 60 ---ENIGIDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQQAANAFLKALEE-----------PPEYAVIVLNTRRWHY- 124 (305)
T ss_dssp ---SCBCHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCHHHHHHTHHHHHS-----------CCTTEEEEEEESCGGG-
T ss_pred ---CCCCHHHHHHHHHHHhhccccCCceEEEeccHHHhCHHHHHHHHHHHhC-----------CCCCeEEEEEECChHh-
Confidence 0122222222333333333 57999999999999999999999998 3458899998875211
Q ss_pred hhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHHHcccc
Q 003088 786 IAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQLP 847 (849)
Q Consensus 786 l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~I~ 847 (849)
+.|++.+| ++.|.|++.+++.+.+
T Consensus 125 -----------------------------------l~~tI~SR---~~~f~~l~~~~i~~~L 148 (305)
T 2gno_A 125 -----------------------------------LLPTIKSR---VFRVVVNVPKEFRDLV 148 (305)
T ss_dssp -----------------------------------SCHHHHTT---SEEEECCCCHHHHHHH
T ss_pred -----------------------------------ChHHHHce---eEeCCCCCHHHHHHHH
Confidence 77899999 8999999999887654
No 144
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.29 E-value=1.4e-11 Score=132.59 Aligned_cols=146 Identities=8% Similarity=0.056 Sum_probs=106.5
Q ss_pred ccHHHHHHHHHHHhcCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhccccccchHHHHHHH
Q 003088 294 GRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTT 373 (849)
Q Consensus 294 G~~~~i~~l~~~l~~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~~~~~~g~~e~~l~~ 373 (849)
|+++.++.+...+..++.++.||+||||+|||++|+++|+.+.... . .+..++.++... ...+ .+.++.
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~--~--~~~d~~~l~~~~-----~~~~--id~ir~ 69 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFP--P--KASDVLEIDPEG-----ENIG--IDDIRT 69 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSC--C--CTTTEEEECCSS-----SCBC--HHHHHH
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhh--c--cCCCEEEEcCCc-----CCCC--HHHHHH
Confidence 6778888999988877777889999999999999999998642110 0 123445554321 1121 233566
Q ss_pred HHHHHHh----cCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCC--CeEEEEccChHHHHHHhhccHHHHh
Q 003088 374 LISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG--ELQCIASTTQDEHRTQFEKDKALAR 447 (849)
Q Consensus 374 l~~~~~~----~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~--~i~vI~at~~~~~~~~~~~d~al~~ 447 (849)
+++.+.. ++..|+||||+|.| +.+++|.|++++|++ ..++|++|+... .+.+++++
T Consensus 70 li~~~~~~p~~~~~kvviIdead~l-------------t~~a~naLLk~LEep~~~t~fIl~t~~~~-----kl~~tI~S 131 (305)
T 2gno_A 70 IKDFLNYSPELYTRKYVIVHDCERM-------------TQQAANAFLKALEEPPEYAVIVLNTRRWH-----YLLPTIKS 131 (305)
T ss_dssp HHHHHTSCCSSSSSEEEEETTGGGB-------------CHHHHHHTHHHHHSCCTTEEEEEEESCGG-----GSCHHHHT
T ss_pred HHHHHhhccccCCceEEEeccHHHh-------------CHHHHHHHHHHHhCCCCCeEEEEEECChH-----hChHHHHc
Confidence 6666653 33579999999999 456789999999974 678888777654 78899999
Q ss_pred ccccEEecCCCHHHHHHHHHHHH
Q 003088 448 RFQPVLISEPSQEDAVRILLGLR 470 (849)
Q Consensus 448 Rf~~i~~~~ps~~e~~~iL~~~~ 470 (849)
| .+.|++|+.++..++|....
T Consensus 132 R--~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 132 R--VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp T--SEEEECCCCHHHHHHHHHHH
T ss_pred e--eEeCCCCCHHHHHHHHHHHh
Confidence 9 89999999999999887654
No 145
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.29 E-value=2.6e-12 Score=141.57 Aligned_cols=161 Identities=22% Similarity=0.289 Sum_probs=104.3
Q ss_pred ccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcC---CCCceeEeeccccccccccc
Q 003088 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFG---SESSMLRLDMSEYMERHTVS 705 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~---~~~~~i~i~~~~~~~~~~~~ 705 (849)
+.++|++++++.+...+... ...++||+||||||||++|+++++.+.+ ....++.+++++........
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~---------~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSA---------NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVR 107 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCT---------TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHT
T ss_pred HHhhCCHHHHHHHHHHHhcC---------CCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHHH
Confidence 66999999998887776432 1124999999999999999999998642 23456777766532211110
Q ss_pred cccCC-CCCccccccCcchhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCch
Q 003088 706 KLIGS-PPGYVGYEEGGLLTEAIRRRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGST 784 (849)
Q Consensus 706 ~l~g~-~~g~vg~~~~~~l~~~i~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~ 784 (849)
..+.. ....+.... ...........+.||||||+|.+++..++.|++.|++.. .+++||+++|....
T Consensus 108 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~-----------~~~~~il~~~~~~~ 175 (353)
T 1sxj_D 108 EKVKNFARLTVSKPS-KHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYS-----------GVTRFCLICNYVTR 175 (353)
T ss_dssp THHHHHHHSCCCCCC-TTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTT-----------TTEEEEEEESCGGG
T ss_pred HHHHHHhhhcccccc-hhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcC-----------CCceEEEEeCchhh
Confidence 00000 000000000 000000011245799999999999999999999999732 36778888875321
Q ss_pred hhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHHHcccc
Q 003088 785 TIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQLP 847 (849)
Q Consensus 785 ~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~I~ 847 (849)
+.+.+.+|+. .+.|.|++.+++.+++
T Consensus 176 ------------------------------------l~~~l~sR~~-~i~~~~~~~~~~~~~l 201 (353)
T 1sxj_D 176 ------------------------------------IIDPLASQCS-KFRFKALDASNAIDRL 201 (353)
T ss_dssp ------------------------------------SCHHHHHHSE-EEECCCCCHHHHHHHH
T ss_pred ------------------------------------CcchhhccCc-eEEeCCCCHHHHHHHH
Confidence 6788999994 8899999988877654
No 146
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.28 E-value=1.4e-11 Score=140.67 Aligned_cols=155 Identities=23% Similarity=0.371 Sum_probs=108.2
Q ss_pred ccccccHHHHHHHHHHHHHhhc-------CCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccc
Q 003088 629 KRVIGQDEAVAAISRAVKRSRV-------GLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMER 701 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~~~~-------g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~ 701 (849)
+.|+|+++++..+...+..... |.. -|. .++|+||||||||++|++|+..+ +.+++.++++++.+.
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~---ip~-GvLL~GppGtGKTtLaraIa~~~---~~~~i~i~g~~~~~~ 103 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGAR---IPK-GVLLVGPPGVGKTHLARAVAGEA---RVPFITASGSDFVEM 103 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCC---CCS-EEEEECSSSSSHHHHHHHHHHHT---TCCEEEEEGGGGTSS
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhccCC---CCc-eEEEECCCCCCHHHHHHHHHHHh---CCCEEEEehhHHHHh
Confidence 5699999999888877654321 111 122 39999999999999999999986 468999999876432
Q ss_pred cccccccCCCCCccccccCcchhHHHHhC---CCeEEEEeCccccCH--------------HHHHHHHHHhhcCeeecCC
Q 003088 702 HTVSKLIGSPPGYVGYEEGGLLTEAIRRR---PFTLLLLDEIEKAHP--------------DIFNILLQVFEDGHLTDSH 764 (849)
Q Consensus 702 ~~~~~l~g~~~g~vg~~~~~~l~~~i~~~---~~~vl~lDEid~l~~--------------~~~~~Ll~~le~g~~~~~~ 764 (849)
++|... ..+...+..+ ..+++||||||.+.. ..++.|+..|+.+.
T Consensus 104 ------------~~g~~~-~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~----- 165 (499)
T 2dhr_A 104 ------------FVGVGA-ARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE----- 165 (499)
T ss_dssp ------------CTTHHH-HHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCC-----
T ss_pred ------------hhhhHH-HHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccc-----
Confidence 222221 1122333332 348999999998742 46678888887643
Q ss_pred CceeecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhh--ccccEEEcCCCCHHH
Q 003088 765 GRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLN--RIDEVVVFRSLEKAQ 842 (849)
Q Consensus 765 g~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~--R~d~~i~f~pl~~~~ 842 (849)
....+++|+++|.+.. ++|.|+. |||..|.+++++.++
T Consensus 166 ----~~~~viviAatn~p~~------------------------------------LD~aLlr~gRfdr~i~i~~Pd~~~ 205 (499)
T 2dhr_A 166 ----KDTAIVVMAATNRPDI------------------------------------LDPALLRPGRFDRQIAIDAPDVKG 205 (499)
T ss_dssp ----SSCCCEEEECCSCGGG------------------------------------SCTTTSSTTSSCCEEECCCCCHHH
T ss_pred ----cCccEEEEEecCChhh------------------------------------cCcccccccccceEEecCCCCHHH
Confidence 1235788888886311 6677775 899999999999888
Q ss_pred HccccC
Q 003088 843 VCQLPL 848 (849)
Q Consensus 843 ~~~I~~ 848 (849)
..+|++
T Consensus 206 R~~IL~ 211 (499)
T 2dhr_A 206 REQILR 211 (499)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877763
No 147
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.28 E-value=1.8e-11 Score=130.00 Aligned_cols=156 Identities=21% Similarity=0.330 Sum_probs=105.5
Q ss_pred ccccccHHHHHHHHHHHHH--------hhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeecccccc
Q 003088 629 KRVIGQDEAVAAISRAVKR--------SRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYME 700 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~--------~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~ 700 (849)
+.|.|.+++++.|...+.. ...++..| .+ ++|+||||||||+++++|+..+ +..++.+++.++..
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~---~G-vlL~Gp~GtGKTtLakala~~~---~~~~i~i~g~~l~~ 82 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTP---AG-VLLAGPPGCGKTLLAKAVANES---GLNFISVKGPELLN 82 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCC---SE-EEEESSTTSCHHHHHHHHHHHT---TCEEEEEETTTTCS
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCC---Ce-EEEECCCCCcHHHHHHHHHHHc---CCCEEEEEcHHHHh
Confidence 4577777777777665422 12244332 23 9999999999999999999985 34688888776543
Q ss_pred ccccccccCCCCCccccccC--cchhHHHHhCCCeEEEEeCccccC-----------HHHHHHHHHHhhcCeeecCCCce
Q 003088 701 RHTVSKLIGSPPGYVGYEEG--GLLTEAIRRRPFTLLLLDEIEKAH-----------PDIFNILLQVFEDGHLTDSHGRR 767 (849)
Q Consensus 701 ~~~~~~l~g~~~g~vg~~~~--~~l~~~i~~~~~~vl~lDEid~l~-----------~~~~~~Ll~~le~g~~~~~~g~~ 767 (849)
. |+|..+. +.+....+...++++|+||+|.+. ..+.+.++..|+.|.
T Consensus 83 ~------------~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~-------- 142 (274)
T 2x8a_A 83 M------------YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLE-------- 142 (274)
T ss_dssp S------------TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCC--------
T ss_pred h------------hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhccc--------
Confidence 1 2332221 122222233456899999999863 236788888888754
Q ss_pred eecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhh--ccccEEEcCCCCHHHHcc
Q 003088 768 VSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLN--RIDEVVVFRSLEKAQVCQ 845 (849)
Q Consensus 768 ~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~--R~d~~i~f~pl~~~~~~~ 845 (849)
....+++++++|... .++|+++. |||..|.+++++.++..+
T Consensus 143 -~~~~~i~ia~tn~p~------------------------------------~LD~al~r~gRfd~~i~~~~P~~~~r~~ 185 (274)
T 2x8a_A 143 -ARQQVFIMAATNRPD------------------------------------IIDPAILRPGRLDKTLFVGLPPPADRLA 185 (274)
T ss_dssp -STTCEEEEEEESCGG------------------------------------GSCHHHHSTTSSCEEEECCSCCHHHHHH
T ss_pred -ccCCEEEEeecCChh------------------------------------hCCHhhcCcccCCeEEEeCCcCHHHHHH
Confidence 123567788888631 17899986 999999999999998888
Q ss_pred ccC
Q 003088 846 LPL 848 (849)
Q Consensus 846 I~~ 848 (849)
|++
T Consensus 186 il~ 188 (274)
T 2x8a_A 186 ILK 188 (274)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 148
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.27 E-value=1.2e-11 Score=135.76 Aligned_cols=159 Identities=25% Similarity=0.369 Sum_probs=109.6
Q ss_pred cCCHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCC--
Q 003088 611 QITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSES-- 688 (849)
Q Consensus 611 ~~~~~~~~~~~~l~~~l~~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~-- 688 (849)
...|.+++++..+ +.++||+.+++.+...+...+ ..|++|+||||||||++|+++++.+.+...
T Consensus 12 ~~~~~~k~rp~~~-----~~~~g~~~~~~~L~~~i~~g~---------~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~ 77 (340)
T 1sxj_C 12 NLPWVEKYRPETL-----DEVYGQNEVITTVRKFVDEGK---------LPHLLFYGPPGTGKTSTIVALAREIYGKNYSN 77 (340)
T ss_dssp CCCHHHHTCCSSG-----GGCCSCHHHHHHHHHHHHTTC---------CCCEEEECSSSSSHHHHHHHHHHHHHTTSHHH
T ss_pred CCchHHHhCCCcH-----HHhcCcHHHHHHHHHHHhcCC---------CceEEEECCCCCCHHHHHHHHHHHHcCCCccc
Confidence 3566666665544 558999999999988876421 124999999999999999999999865331
Q ss_pred ceeEeeccccccccccccccCCCCCcccccc-CcchhHHHH-----hCCCeEEEEeCccccCHHHHHHHHHHhhcCeeec
Q 003088 689 SMLRLDMSEYMERHTVSKLIGSPPGYVGYEE-GGLLTEAIR-----RRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTD 762 (849)
Q Consensus 689 ~~i~i~~~~~~~~~~~~~l~g~~~g~vg~~~-~~~l~~~i~-----~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~ 762 (849)
.+..++++... |... ...+..... ...+.|++|||+|.++...++.|++.+++.
T Consensus 78 ~~~~~~~~~~~----------------~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~---- 137 (340)
T 1sxj_C 78 MVLELNASDDR----------------GIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERY---- 137 (340)
T ss_dssp HEEEECTTSCC----------------SHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHT----
T ss_pred eEEEEcCcccc----------------cHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcC----
Confidence 23334433211 1000 001111111 123579999999999999999999999972
Q ss_pred CCCceeecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHH
Q 003088 763 SHGRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQ 842 (849)
Q Consensus 763 ~~g~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~ 842 (849)
..+++||+++|.... +.|.+.+|+ ..+.|.|++.++
T Consensus 138 -------~~~~~~il~~n~~~~------------------------------------i~~~i~sR~-~~~~~~~l~~~~ 173 (340)
T 1sxj_C 138 -------TKNTRFCVLANYAHK------------------------------------LTPALLSQC-TRFRFQPLPQEA 173 (340)
T ss_dssp -------TTTEEEEEEESCGGG------------------------------------SCHHHHTTS-EEEECCCCCHHH
T ss_pred -------CCCeEEEEEecCccc------------------------------------cchhHHhhc-eeEeccCCCHHH
Confidence 346788898886321 678899999 588999999888
Q ss_pred Hcccc
Q 003088 843 VCQLP 847 (849)
Q Consensus 843 ~~~I~ 847 (849)
+.+++
T Consensus 174 ~~~~l 178 (340)
T 1sxj_C 174 IERRI 178 (340)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76654
No 149
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.26 E-value=1.9e-11 Score=126.23 Aligned_cols=160 Identities=20% Similarity=0.270 Sum_probs=101.5
Q ss_pred ccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccc-----cc
Q 003088 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMER-----HT 703 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~-----~~ 703 (849)
+.++|++..++.+...+.... ....++|+||+|||||++|+.+++.+.... ......|...... ..
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~--------~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 93 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGR--------IHHAYLFSGTRGVGKTSIARLLAKGLNCET-GITATPCGVCDNCREIEQGR 93 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTC--------CCSEEEEECSTTSCHHHHHHHHHHHHHCTT-CSCSSCCSCSHHHHHHHTTC
T ss_pred HHHhCcHHHHHHHHHHHHcCC--------CCeEEEEECCCCCCHHHHHHHHHHHhcCCC-CCCCCCCcccHHHHHHhccC
Confidence 569999999999988887531 112499999999999999999998874322 1111111111000 00
Q ss_pred cccccCCCCCccccccCcchhHHHHh-------CCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEE
Q 003088 704 VSKLIGSPPGYVGYEEGGLLTEAIRR-------RPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIV 776 (849)
Q Consensus 704 ~~~l~g~~~g~vg~~~~~~l~~~i~~-------~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI 776 (849)
...++..... +......+...+.. ..+.+|||||+|.+++..++.|++.+++. ..++++|
T Consensus 94 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~-----------~~~~~~i 160 (250)
T 1njg_A 94 FVDLIEIDAA--SRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEP-----------PEHVKFL 160 (250)
T ss_dssp CSSEEEEETT--CGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSC-----------CTTEEEE
T ss_pred CcceEEecCc--ccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcC-----------CCceEEE
Confidence 0001100000 00001112223322 23579999999999999999999999862 2467888
Q ss_pred EecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHHHcccc
Q 003088 777 MTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQLP 847 (849)
Q Consensus 777 ~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~I~ 847 (849)
+++|.... +.+.+.+|+ ..+.|+|++.+++.+++
T Consensus 161 ~~t~~~~~------------------------------------~~~~l~~r~-~~i~l~~l~~~e~~~~l 194 (250)
T 1njg_A 161 LATTDPQK------------------------------------LPVTILSRC-LQFHLKALDVEQIRHQL 194 (250)
T ss_dssp EEESCGGG------------------------------------SCHHHHTTS-EEEECCCCCHHHHHHHH
T ss_pred EEeCChHh------------------------------------CCHHHHHHh-hhccCCCCCHHHHHHHH
Confidence 88885211 567788886 78899999998887765
No 150
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.26 E-value=1.5e-11 Score=132.24 Aligned_cols=171 Identities=12% Similarity=0.030 Sum_probs=111.3
Q ss_pred ccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCC-------CCceeEeeccccccc
Q 003088 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGS-------ESSMLRLDMSEYMER 701 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~-------~~~~i~i~~~~~~~~ 701 (849)
+.+.|+++-++.|...+...-.+.. ..+++|+||||||||++++.+++.+... ...++.++|..+.+.
T Consensus 20 ~~L~~Re~E~~~i~~~L~~~i~~~~-----~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~ 94 (318)
T 3te6_A 20 ELLKSQVEDFTRIFLPIYDSLMSSQ-----NKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGM 94 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC-----CCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--
T ss_pred cccCCHHHHHHHHHHHHHHHhcCCC-----CCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCH
Confidence 3478899999999988887654432 2359999999999999999999988421 245789999877654
Q ss_pred ccc-----ccccCCCCCccccccCcchhHHHH-----hCCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecC
Q 003088 702 HTV-----SKLIGSPPGYVGYEEGGLLTEAIR-----RRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFK 771 (849)
Q Consensus 702 ~~~-----~~l~g~~~g~vg~~~~~~l~~~i~-----~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~ 771 (849)
... ..+.|....+ |.. ...+...+. .....||||||+|.+. -|+.|+.+++-.. ....
T Consensus 95 ~~~~~~I~~~L~g~~~~~-~~~-~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~--------~~~s 162 (318)
T 3te6_A 95 DALYEKIWFAISKENLCG-DIS-LEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWIS--------SKNS 162 (318)
T ss_dssp HHHHHHHHHHHSCCC--C-CCC-HHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHH--------CSSC
T ss_pred HHHHHHHHHHhcCCCCCc-hHH-HHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhccc--------ccCC
Confidence 222 2333432111 111 112333333 2345799999999998 5677777765211 0124
Q ss_pred CeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccc-cEEEcCCCCHHHHccccC
Q 003088 772 NALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRID-EVVVFRSLEKAQVCQLPL 848 (849)
Q Consensus 772 ~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d-~~i~f~pl~~~~~~~I~~ 848 (849)
+++||+++|.-.- . ...+.+.+.+|+. ..|.|+||+.+++.+|++
T Consensus 163 ~~~vI~i~n~~d~--~------------------------------~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~ 208 (318)
T 3te6_A 163 KLSIICVGGHNVT--I------------------------------REQINIMPSLKAHFTEIKLNKVDKNELQQMII 208 (318)
T ss_dssp CEEEEEECCSSCC--C------------------------------HHHHHTCHHHHTTEEEEECCCCCHHHHHHHHH
T ss_pred cEEEEEEecCccc--c------------------------------hhhcchhhhccCCceEEEeCCCCHHHHHHHHH
Confidence 6789999886210 0 0113456778986 689999999999999874
No 151
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.24 E-value=2.4e-10 Score=128.41 Aligned_cols=216 Identities=14% Similarity=0.120 Sum_probs=133.8
Q ss_pred CCccccHHHHHHHHHHH-hc------CCCCCCeE--eCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhh---
Q 003088 290 DPVIGRETEIQRIIQIL-CR------RTKNNPIL--LGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLL--- 357 (849)
Q Consensus 290 ~~iiG~~~~i~~l~~~l-~~------~~~~niLL--~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~--- 357 (849)
+.++||+++++.+...+ .. ....+++| +||+|+|||++++.+++.+.... .....+..++.+++...
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 100 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAA-AKEGLTVKQAYVNAFNAPNL 100 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHH-HHTTCCEEEEEEEGGGCCSH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHH-hccCCceeEEEEECCCCCCH
Confidence 57999999999998887 42 24557888 99999999999999998875310 00001234445543211
Q ss_pred ---h----c--cc--cccc-hHHHHHHHHHHHHH-hcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhc----
Q 003088 358 ---M----A--GA--KERG-ELEARVTTLISEIQ-KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG---- 420 (849)
Q Consensus 358 ---~----~--~~--~~~g-~~e~~l~~l~~~~~-~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le---- 420 (849)
. . +. ...+ .....+..+.+.+. ..++.||||||+|.+..... ...+....|...+.
T Consensus 101 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~-------~~~~~l~~l~~~~~~~~~ 173 (412)
T 1w5s_A 101 YTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPR-------IAAEDLYTLLRVHEEIPS 173 (412)
T ss_dssp HHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTT-------SCHHHHHHHHTHHHHSCC
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccC-------cchHHHHHHHHHHHhccc
Confidence 0 0 00 0011 12222333333333 24578999999999953210 12344444434443
Q ss_pred -C--CCeEEEEccChHHHHHHhhcc---HHHHhccc-cEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhh
Q 003088 421 -R--GELQCIASTTQDEHRTQFEKD---KALARRFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLS 493 (849)
Q Consensus 421 -~--~~i~vI~at~~~~~~~~~~~d---~al~~Rf~-~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls 493 (849)
. .++.+|++|+..++.. .++ +.+.++|. .+.+++++.++..+++....... .....++++++..++..+
T Consensus 174 ~~~~~~v~lI~~~~~~~~~~--~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~--~~~~~~~~~~~~~i~~~~ 249 (412)
T 1w5s_A 174 RDGVNRIGFLLVASDVRALS--YMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELG--LRDTVWEPRHLELISDVY 249 (412)
T ss_dssp TTSCCBEEEEEEEEETHHHH--HHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHH--BCTTSCCHHHHHHHHHHH
T ss_pred CCCCceEEEEEEeccccHHH--HHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhc--CCCCCCChHHHHHHHHHH
Confidence 3 5788888887655433 334 67777775 49999999999999998765532 223468899999998888
Q ss_pred hcccccCcchhhHHHHHHHHhhHH
Q 003088 494 ARYISDRYLPDKAIDLVDEAGSRA 517 (849)
Q Consensus 494 ~~~~~~r~~p~~ai~ll~~a~~~~ 517 (849)
.........|..+..++..++..+
T Consensus 250 ~~~~~~~G~p~~~~~l~~~a~~~a 273 (412)
T 1w5s_A 250 GEDKGGDGSARRAIVALKMACEMA 273 (412)
T ss_dssp CGGGTSCCCHHHHHHHHHHHHHHH
T ss_pred HHhccCCCcHHHHHHHHHHHHHHH
Confidence 843222245667788877765443
No 152
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.24 E-value=2.4e-11 Score=134.88 Aligned_cols=162 Identities=21% Similarity=0.309 Sum_probs=103.7
Q ss_pred ccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeecccccccc-----c
Q 003088 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERH-----T 703 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~-----~ 703 (849)
+.++|++.+++.+...+...+. ...++|+||+|||||++|+++++.+.... ......|....... .
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~~--------~~~~ll~G~~G~GKT~la~~la~~l~~~~-~~~~~~~~~~~~~~~~~~~~ 86 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGRI--------HHAYLFSGTRGVGKTSIARLLAKGLNCET-GITATPCGVCDNCREIEQGR 86 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTCC--------CSEEEEESCTTSSHHHHHHHHHHHHSCTT-CSCSSCCSSSHHHHHHHTSC
T ss_pred hhccCcHHHHHHHHHHHHhCCC--------CeEEEEECCCCCCHHHHHHHHHHHhCCCC-CCCCCCCcccHHHHHHhccC
Confidence 5699999999999998875321 12389999999999999999999884322 11111121111000 0
Q ss_pred cccccC-CCCCccccccCcchhHHHHh----CCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEe
Q 003088 704 VSKLIG-SPPGYVGYEEGGLLTEAIRR----RPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMT 778 (849)
Q Consensus 704 ~~~l~g-~~~g~vg~~~~~~l~~~i~~----~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~t 778 (849)
...++. .+.+..+......+.+.+.. ..+.||+|||+|.++...++.|++.+++ ...+++||++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~-----------~~~~~~~Il~ 155 (373)
T 1jr3_A 87 FVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE-----------PPEHVKFLLA 155 (373)
T ss_dssp CSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHS-----------CCSSEEEEEE
T ss_pred CCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhc-----------CCCceEEEEE
Confidence 000000 00011111111122222222 2357999999999999999999999987 2347888888
Q ss_pred cCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHHHcccc
Q 003088 779 SNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQLP 847 (849)
Q Consensus 779 sn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~I~ 847 (849)
++... .+.+.+.+|+ ..+.|.|++.+++.+++
T Consensus 156 ~~~~~------------------------------------~l~~~l~sr~-~~i~~~~l~~~~~~~~l 187 (373)
T 1jr3_A 156 TTDPQ------------------------------------KLPVTILSRC-LQFHLKALDVEQIRHQL 187 (373)
T ss_dssp ESCGG------------------------------------GSCHHHHTTS-EEEECCCCCHHHHHHHH
T ss_pred eCChH------------------------------------hCcHHHHhhe-eEeeCCCCCHHHHHHHH
Confidence 87421 1677888898 78999999999887765
No 153
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.23 E-value=4.4e-11 Score=136.83 Aligned_cols=182 Identities=15% Similarity=0.141 Sum_probs=108.2
Q ss_pred CCccccHHHHHHHHHHHhcCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhccccccchHHH
Q 003088 290 DPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEA 369 (849)
Q Consensus 290 ~~iiG~~~~i~~l~~~l~~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~~~~~~g~~e~ 369 (849)
..++|+++.++.+...+..+ .|+||+||||||||++|++||..+..+ .+.....+.+. ..+.+.... .+....
T Consensus 22 ~~ivGq~~~i~~l~~al~~~--~~VLL~GpPGtGKT~LAraLa~~l~~~-~~f~~~~~~~~--t~~dL~G~~--~~~~~~ 94 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAFQNA-RAFEYLMTRFS--TPEEVFGPL--SIQALK 94 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT--CEEEEECCSSSSHHHHHHHGGGGBSSC-CEEEEECCTTC--CHHHHHCCB--C-----
T ss_pred hhhHHHHHHHHHHHHHHhcC--CeeEeecCchHHHHHHHHHHHHHHhhh-hHHHHHHHhcC--CHHHhcCcc--cHHHHh
Confidence 36899999999988777654 589999999999999999999877321 11111111110 112222110 010000
Q ss_pred HHHHHHHHHHhc---CCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCCC------------eEEEEccChHH
Q 003088 370 RVTTLISEIQKS---GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGE------------LQCIASTTQDE 434 (849)
Q Consensus 370 ~l~~l~~~~~~~---~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~~------------i~vI~at~~~~ 434 (849)
. ...+..+..+ .+.|||||||+.+ ..+.++.|+..++.+. ..+|+|||..+
T Consensus 95 ~-~g~~~~~~~g~l~~~~IL~IDEI~r~-------------~~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~ATN~lp 160 (500)
T 3nbx_X 95 D-EGRYERLTSGYLPEAEIVFLDEIWKA-------------GPAILNTLLTAINERQFRNGAHVEKIPMRLLVAASNELP 160 (500)
T ss_dssp ------CBCCTTSGGGCSEEEEESGGGC-------------CHHHHHHHHHHHHSSEEECSSSEEECCCCEEEEEESSCC
T ss_pred h-chhHHhhhccCCCcceeeeHHhHhhh-------------cHHHHHHHHHHHHHHhccCCCCcCCcchhhhhhccccCC
Confidence 0 1111111111 2459999999887 4667888888886432 23577777432
Q ss_pred HHHHhhccHHHHhccc-cEEecCCCH-HHHHHHHHHHHH-------------------HHHhhcCCccCHHHHHHHHHhh
Q 003088 435 HRTQFEKDKALARRFQ-PVLISEPSQ-EDAVRILLGLRE-------------------KYEAHHNCKFTLEAINAAVHLS 493 (849)
Q Consensus 435 ~~~~~~~d~al~~Rf~-~i~~~~ps~-~e~~~iL~~~~~-------------------~~~~~~~~~i~~~~l~~~a~ls 493 (849)
......+++.+||. .+.+++|+. +++..|+..... ......++.++++++++++.+.
T Consensus 161 --e~~~~~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v~e~i~~l~ 238 (500)
T 3nbx_X 161 --EADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHVFELIFMLR 238 (500)
T ss_dssp --CTTCTTHHHHTTCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHHHHHHHHHH
T ss_pred --CccccHHHHHHHHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHHHHHHHHHH
Confidence 01123469999997 599999976 778888865321 1111235677777777777766
Q ss_pred h
Q 003088 494 A 494 (849)
Q Consensus 494 ~ 494 (849)
.
T Consensus 239 ~ 239 (500)
T 3nbx_X 239 Q 239 (500)
T ss_dssp H
T ss_pred H
Confidence 3
No 154
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.23 E-value=1.4e-11 Score=137.24 Aligned_cols=169 Identities=20% Similarity=0.244 Sum_probs=114.8
Q ss_pred ccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCC--------CCceeEeeccccc-
Q 003088 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGS--------ESSMLRLDMSEYM- 699 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~--------~~~~i~i~~~~~~- 699 (849)
+.++|+++.++.+...+.....+.. ..+++|+||||||||++|+.+++.+... +.+++.++|....
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~-----~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 94 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEV-----KFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGG 94 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCC-----CCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCS
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCC-----CCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCC
Confidence 6799999999999998877544321 2359999999999999999999986332 5678999987654
Q ss_pred ccc-----ccccccCCCCCccccccCcc---hhHHHHhCCCeEEEEeCccccCHH-HHHH-HHHHhhcCeeecCCCceee
Q 003088 700 ERH-----TVSKLIGSPPGYVGYEEGGL---LTEAIRRRPFTLLLLDEIEKAHPD-IFNI-LLQVFEDGHLTDSHGRRVS 769 (849)
Q Consensus 700 ~~~-----~~~~l~g~~~g~vg~~~~~~---l~~~i~~~~~~vl~lDEid~l~~~-~~~~-Ll~~le~g~~~~~~g~~~~ 769 (849)
... ....+.|.+.++.|...... +...+...+ .||||||+|.+... .++. |..+++..
T Consensus 95 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~-~vlilDEi~~l~~~~~~~~~l~~l~~~~----------- 162 (384)
T 2qby_B 95 TPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIR-AIIYLDEVDTLVKRRGGDIVLYQLLRSD----------- 162 (384)
T ss_dssp CHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSC-EEEEEETTHHHHHSTTSHHHHHHHHTSS-----------
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCC-CEEEEECHHHhccCCCCceeHHHHhcCC-----------
Confidence 211 12233354444444433222 222233333 39999999999754 2455 44454431
Q ss_pred cCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHHHccccC
Q 003088 770 FKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQLPL 848 (849)
Q Consensus 770 ~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~I~~ 848 (849)
.+++||+++|.... ...+.+.+.+||...+.|+||+.+++.+|++
T Consensus 163 -~~~~iI~~t~~~~~---------------------------------~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~ 207 (384)
T 2qby_B 163 -ANISVIMISNDINV---------------------------------RDYMEPRVLSSLGPSVIFKPYDAEQLKFILS 207 (384)
T ss_dssp -SCEEEEEECSSTTT---------------------------------TTTSCHHHHHTCCCEEEECCCCHHHHHHHHH
T ss_pred -cceEEEEEECCCch---------------------------------HhhhCHHHHhcCCCeEEECCCCHHHHHHHHH
Confidence 47889999986320 0116788999997899999999999888763
No 155
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.20 E-value=1.1e-10 Score=130.13 Aligned_cols=176 Identities=16% Similarity=0.252 Sum_probs=118.0
Q ss_pred ccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCC-CCceeEeecccccccccc---
Q 003088 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGS-ESSMLRLDMSEYMERHTV--- 704 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~-~~~~i~i~~~~~~~~~~~--- 704 (849)
+.++|++..++.+...+.....|... . ..+++|+||+|||||++++.+++.+... +..++.++|.........
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~-~--~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 93 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGH-H--YPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGE 93 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTS-S--CCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCC-C--CCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHH
Confidence 56999999999999988875444211 1 0149999999999999999999998655 567899998765432111
Q ss_pred -ccccCCCCCccccccC---cchhHHHHh-CCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEec
Q 003088 705 -SKLIGSPPGYVGYEEG---GLLTEAIRR-RPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTS 779 (849)
Q Consensus 705 -~~l~g~~~g~vg~~~~---~~l~~~i~~-~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ts 779 (849)
...+|.+....|.... ..+...+.. ....||||||++.+++..++.|+..+++..- ....++.||+++
T Consensus 94 l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~-------~~~~~~~iI~~~ 166 (389)
T 1fnn_A 94 IARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADK-------LGAFRIALVIVG 166 (389)
T ss_dssp HHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHH-------HSSCCEEEEEEE
T ss_pred HHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCC-------CCcCCEEEEEEE
Confidence 1122322111121111 112223333 3357999999999999999999999975210 001367888888
Q ss_pred CCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhcccc-EEEcCCCCHHHHcccc
Q 003088 780 NVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDE-VVVFRSLEKAQVCQLP 847 (849)
Q Consensus 780 n~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~-~i~f~pl~~~~~~~I~ 847 (849)
|... +...+.+.+.+||.. .+.|+|++.+++.+++
T Consensus 167 ~~~~---------------------------------~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l 202 (389)
T 1fnn_A 167 HNDA---------------------------------VLNNLDPSTRGIMGKYVIRFSPYTKDQIFDIL 202 (389)
T ss_dssp SSTH---------------------------------HHHTSCHHHHHHHTTCEEECCCCBHHHHHHHH
T ss_pred CCch---------------------------------HHHHhCHHhhhcCCCceEEeCCCCHHHHHHHH
Confidence 8631 111267888899975 8999999999988775
No 156
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.17 E-value=5.6e-11 Score=131.04 Aligned_cols=159 Identities=14% Similarity=0.253 Sum_probs=98.1
Q ss_pred ccccccHHHHHHHHHHH-HHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccc------
Q 003088 629 KRVIGQDEAVAAISRAV-KRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMER------ 701 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l-~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~------ 701 (849)
+.++|++.+++.+...+ .. .+ ..+++|+||+|+|||+++++++..+++....-+.++...+...
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~--------~~-~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~ 84 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQP--------RD-LPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLE 84 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCT--------TC-CCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC-----------------
T ss_pred HHhcCCHHHHHHHHHHHhhC--------CC-CCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccce
Confidence 56899999988876665 21 11 1249999999999999999999976553322222221111000
Q ss_pred ------cccccccCCCCCccccccCcchhHHHH-----------------hCCCeEEEEeCccccCHHHHHHHHHHhhcC
Q 003088 702 ------HTVSKLIGSPPGYVGYEEGGLLTEAIR-----------------RRPFTLLLLDEIEKAHPDIFNILLQVFEDG 758 (849)
Q Consensus 702 ------~~~~~l~g~~~g~vg~~~~~~l~~~i~-----------------~~~~~vl~lDEid~l~~~~~~~Ll~~le~g 758 (849)
.....+... ..+......+.+.+. ...+.||+|||++.+++..++.|++.|++.
T Consensus 85 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~ 161 (354)
T 1sxj_E 85 LNVVSSPYHLEITPS---DMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKY 161 (354)
T ss_dssp -CCEECSSEEEECCC-------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHHHHHHHHS
T ss_pred eeeecccceEEecHh---hcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHHHHHHHHHHHHhh
Confidence 000000000 001000001111111 124569999999999999999999999872
Q ss_pred eeecCCCceeecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCC
Q 003088 759 HLTDSHGRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSL 838 (849)
Q Consensus 759 ~~~~~~g~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl 838 (849)
..+++||++||.... +.+.+.+|+ ..+.|.|+
T Consensus 162 -----------~~~~~~Il~t~~~~~------------------------------------l~~~l~sR~-~~~~~~~~ 193 (354)
T 1sxj_E 162 -----------SKNIRLIMVCDSMSP------------------------------------IIAPIKSQC-LLIRCPAP 193 (354)
T ss_dssp -----------TTTEEEEEEESCSCS------------------------------------SCHHHHTTS-EEEECCCC
T ss_pred -----------cCCCEEEEEeCCHHH------------------------------------HHHHHHhhc-eEEecCCc
Confidence 236788888885321 568899999 89999999
Q ss_pred CHHHHcccc
Q 003088 839 EKAQVCQLP 847 (849)
Q Consensus 839 ~~~~~~~I~ 847 (849)
+.+++.+++
T Consensus 194 ~~~~~~~~l 202 (354)
T 1sxj_E 194 SDSEISTIL 202 (354)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 999887765
No 157
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.17 E-value=2.8e-11 Score=119.85 Aligned_cols=148 Identities=21% Similarity=0.268 Sum_probs=96.8
Q ss_pred hccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcC-------CCCceeEeecccccc
Q 003088 628 KKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFG-------SESSMLRLDMSEYME 700 (849)
Q Consensus 628 ~~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~-------~~~~~i~i~~~~~~~ 700 (849)
.+.++|++..++.+...+.. ....+++|+||||||||++|+.+++.+.. .+.+++.+++..+..
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~---------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (187)
T 2p65_A 21 LDPVIGRDTEIRRAIQILSR---------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIA 91 (187)
T ss_dssp SCCCCSCHHHHHHHHHHHTS---------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHHHH
T ss_pred cchhhcchHHHHHHHHHHhC---------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHhhc
Confidence 36799999998888777643 11235999999999999999999998744 245667776655432
Q ss_pred ccccccccCCCCCcccccc--CcchhHHHHhC-CCeEEEEeCccccC---------HHHHHHHHHHhhcCeeecCCCcee
Q 003088 701 RHTVSKLIGSPPGYVGYEE--GGLLTEAIRRR-PFTLLLLDEIEKAH---------PDIFNILLQVFEDGHLTDSHGRRV 768 (849)
Q Consensus 701 ~~~~~~l~g~~~g~vg~~~--~~~l~~~i~~~-~~~vl~lDEid~l~---------~~~~~~Ll~~le~g~~~~~~g~~~ 768 (849)
.. .+.|... ...+...+... .+.||||||+|.+. ..+++.|...++.+
T Consensus 92 ~~----------~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~~---------- 151 (187)
T 2p65_A 92 GA----------KYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLARG---------- 151 (187)
T ss_dssp HC----------CSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHHTT----------
T ss_pred CC----------CchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccccchHHHHHHHHHHhcC----------
Confidence 10 0111110 01122222333 45799999999997 56788888888762
Q ss_pred ecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCC
Q 003088 769 SFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLE 839 (849)
Q Consensus 769 ~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~ 839 (849)
++++|+++|.....- ...+++.|.+||+ .+.+++++
T Consensus 152 ---~~~ii~~~~~~~~~~-------------------------------~~~~~~~l~~R~~-~i~i~~p~ 187 (187)
T 2p65_A 152 ---ELRCIGATTVSEYRQ-------------------------------FIEKDKALERRFQ-QILVEQPS 187 (187)
T ss_dssp ---CSCEEEEECHHHHHH-------------------------------HTTTCHHHHHHEE-EEECCSCC
T ss_pred ---CeeEEEecCHHHHHH-------------------------------HHhccHHHHHhcC-cccCCCCC
Confidence 467899888532100 0016799999997 47777764
No 158
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.17 E-value=1.1e-10 Score=122.42 Aligned_cols=156 Identities=25% Similarity=0.376 Sum_probs=101.6
Q ss_pred ccccccHHHHHHHHHHHHHh-------hcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccc
Q 003088 629 KRVIGQDEAVAAISRAVKRS-------RVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMER 701 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~~-------~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~ 701 (849)
++++|+++++..+....... ..+... |.+ ++|+||||||||+++++++..+ ..+++.+++..+...
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~---~~g-~ll~G~~G~GKTtl~~~i~~~~---~~~~i~~~~~~~~~~ 88 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARI---PKG-VLLVGPPGVGKTHLARAVAGEA---RVPFITASGSDFVEM 88 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCC---CSE-EEEECCTTSSHHHHHHHHHHHT---TCCEEEEEHHHHHHS
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCC---CCe-EEEECCCCCCHHHHHHHHHHHh---CCCEEEeeHHHHHHH
Confidence 45788887777776654331 112222 223 9999999999999999999986 366888887665431
Q ss_pred cccccccCCCCCcccccc--CcchhHHHHhCCCeEEEEeCccccC--------------HHHHHHHHHHhhcCeeecCCC
Q 003088 702 HTVSKLIGSPPGYVGYEE--GGLLTEAIRRRPFTLLLLDEIEKAH--------------PDIFNILLQVFEDGHLTDSHG 765 (849)
Q Consensus 702 ~~~~~l~g~~~g~vg~~~--~~~l~~~i~~~~~~vl~lDEid~l~--------------~~~~~~Ll~~le~g~~~~~~g 765 (849)
+.+... ...+.+.......+++|+||+|.+. ...++.|+..|+.+.
T Consensus 89 ------------~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~------ 150 (254)
T 1ixz_A 89 ------------FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE------ 150 (254)
T ss_dssp ------------CTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCC------
T ss_pred ------------HhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCC------
Confidence 111111 0112222222345899999998763 135677888887643
Q ss_pred ceeecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhh--ccccEEEcCCCCHHHH
Q 003088 766 RRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLN--RIDEVVVFRSLEKAQV 843 (849)
Q Consensus 766 ~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~--R~d~~i~f~pl~~~~~ 843 (849)
....+++++++|.+. .++|.++. ||+..+.+++++.++.
T Consensus 151 ---~~~~~i~~a~t~~p~------------------------------------~ld~~l~r~~rf~~~i~i~~p~~~~r 191 (254)
T 1ixz_A 151 ---KDTAIVVMAATNRPD------------------------------------ILDPALLRPGRFDRQIAIDAPDVKGR 191 (254)
T ss_dssp ---TTCCEEEEEEESCGG------------------------------------GSCGGGGSTTSSCEEEECCSCCHHHH
T ss_pred ---CCCCEEEEEccCCch------------------------------------hCCHHHcCCCcCCeEEeeCCcCHHHH
Confidence 112467777887631 16788886 8999999999998888
Q ss_pred ccccC
Q 003088 844 CQLPL 848 (849)
Q Consensus 844 ~~I~~ 848 (849)
.+|++
T Consensus 192 ~~il~ 196 (254)
T 1ixz_A 192 EQILR 196 (254)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77753
No 159
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=99.15 E-value=1.1e-10 Score=129.53 Aligned_cols=175 Identities=16% Similarity=0.162 Sum_probs=109.7
Q ss_pred HHHHHHHHhccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHH-HHHhcCCCCceeEeecccc
Q 003088 620 LVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSL-AACYFGSESSMLRLDMSEY 698 (849)
Q Consensus 620 ~~~l~~~l~~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~l-a~~l~~~~~~~i~i~~~~~ 698 (849)
...+.+.+.. |+||+.++..+.-++ .|.....+...|+||.|+||| ||++|+++ ++.+.+ ..+....++..
T Consensus 205 ~~~l~~sIap-I~G~e~vK~aLll~L----~GG~~k~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR--~~ft~g~~ss~ 276 (506)
T 3f8t_A 205 LTTFARAIAP-LPGAEEVGKMLALQL----FSCVGKNSERLHVLLAGYPVV-CSEILHHVLDHLAPR--GVYVDLRRTEL 276 (506)
T ss_dssp HHHHHHHHCC-STTCHHHHHHHHHHH----TTCCSSGGGCCCEEEESCHHH-HHHHHHHHHHHTCSS--EEEEEGGGCCH
T ss_pred HHHHHHHhcc-cCCCHHHHHHHHHHH----cCCccccCCceeEEEECCCCh-HHHHHHHHHHHhCCC--eEEecCCCCCc
Confidence 4566777878 999999876664444 232211222337999999999 99999999 876522 11221111110
Q ss_pred ccccccccccCCCCCccccccCcchhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEe
Q 003088 699 MERHTVSKLIGSPPGYVGYEEGGLLTEAIRRRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMT 778 (849)
Q Consensus 699 ~~~~~~~~l~g~~~g~vg~~~~~~l~~~i~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~t 778 (849)
. ..... +.+. .| . ..-.+.+..+.++|+|+|||+++++..|..|+++||++.++.. |. ....++.||+|
T Consensus 277 ~-gLt~s-~r~~-tG-~-----~~~~G~l~LAdgGvl~lDEIn~~~~~~qsaLlEaMEe~~VtI~-G~-~lparf~VIAA 345 (506)
T 3f8t_A 277 T-DLTAV-LKED-RG-W-----ALRAGAAVLADGGILAVDHLEGAPEPHRWALMEAMDKGTVTVD-GI-ALNARCAVLAA 345 (506)
T ss_dssp H-HHSEE-EEES-SS-E-----EEEECHHHHTTTSEEEEECCTTCCHHHHHHHHHHHHHSEEEET-TE-EEECCCEEEEE
T ss_pred c-CceEE-EEcC-CC-c-----ccCCCeeEEcCCCeeehHhhhhCCHHHHHHHHHHHhCCcEEEC-CE-EcCCCeEEEEE
Confidence 0 00111 1111 11 1 1112455566789999999999999999999999999999887 65 33459999999
Q ss_pred cCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCC
Q 003088 779 SNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSL 838 (849)
Q Consensus 779 sn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl 838 (849)
+|+.. .|. ... . .+ .--+.+.+++|||.++....+
T Consensus 346 ~NP~~-----------~yd--~~~-s-~~----------~~~Lp~alLDRFDLi~i~~d~ 380 (506)
T 3f8t_A 346 INPGE-----------QWP--SDP-P-IA----------RIDLDQDFLSHFDLIAFLGVD 380 (506)
T ss_dssp ECCCC-------------C--CSC-G-GG----------GCCSCHHHHTTCSEEEETTC-
T ss_pred eCccc-----------ccC--CCC-C-cc----------ccCCChHHhhheeeEEEecCC
Confidence 99843 111 000 0 00 012889999999987765444
No 160
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.15 E-value=8.2e-11 Score=128.18 Aligned_cols=134 Identities=13% Similarity=0.183 Sum_probs=91.0
Q ss_pred cceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccccccCCCCCccccccCcchhHHHHhCCCeEEEEeCc
Q 003088 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRRRPFTLLLLDEI 740 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~i~~~~~~vl~lDEi 740 (849)
+++|+||||||||++|+++++.+...+.+++.+++.++....... + .......+..... ..+||||||+
T Consensus 39 ~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~~~~-~--------~~~~~~~~~~~~~--~~~vL~iDEi 107 (324)
T 1l8q_A 39 PIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEH-L--------KKGTINEFRNMYK--SVDLLLLDDV 107 (324)
T ss_dssp SEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHH-H--------HHTCHHHHHHHHH--TCSEEEEECG
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHH-H--------HcCcHHHHHHHhc--CCCEEEEcCc
Confidence 499999999999999999999885556789999988764321100 0 0000112223332 2579999999
Q ss_pred cccCH--HHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHH
Q 003088 741 EKAHP--DIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELK 818 (849)
Q Consensus 741 d~l~~--~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~ 818 (849)
+.++. ..++.|+..++... ..+.++|++++..+..+.
T Consensus 108 ~~l~~~~~~~~~l~~~l~~~~----------~~~~~iii~~~~~~~~l~------------------------------- 146 (324)
T 1l8q_A 108 QFLSGKERTQIEFFHIFNTLY----------LLEKQIILASDRHPQKLD------------------------------- 146 (324)
T ss_dssp GGGTTCHHHHHHHHHHHHHHH----------HTTCEEEEEESSCGGGCT-------------------------------
T ss_pred ccccCChHHHHHHHHHHHHHH----------HCCCeEEEEecCChHHHH-------------------------------
Confidence 99986 78888888876411 113356666665443221
Q ss_pred hhCChHHhhccc--cEEEcCCCCHHHHccccC
Q 003088 819 AYFRPELLNRID--EVVVFRSLEKAQVCQLPL 848 (849)
Q Consensus 819 ~~~~pell~R~d--~~i~f~pl~~~~~~~I~~ 848 (849)
.+.+.|++||+ .++.|+| +.+++.+|++
T Consensus 147 -~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~ 176 (324)
T 1l8q_A 147 -GVSDRLVSRFEGGILVEIEL-DNKTRFKIIK 176 (324)
T ss_dssp -TSCHHHHHHHHTSEEEECCC-CHHHHHHHHH
T ss_pred -HhhhHhhhcccCceEEEeCC-CHHHHHHHHH
Confidence 17889999996 6899999 9998887753
No 161
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.15 E-value=4.4e-11 Score=133.09 Aligned_cols=176 Identities=15% Similarity=0.182 Sum_probs=112.1
Q ss_pred ccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcC------CCCceeEeecccccccc
Q 003088 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFG------SESSMLRLDMSEYMERH 702 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~------~~~~~i~i~~~~~~~~~ 702 (849)
+.++|++..++.+...+.....+ ....+++|+||||||||++|+.+++.+.. .+.+++.++|.......
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~-----~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 93 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRG-----EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPY 93 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSS-----CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcC-----CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHH
Confidence 67999999999998877643212 11235999999999999999999988732 25678899987654321
Q ss_pred c----cccccCCCCCccccccCc---chhHHHHhCC-CeEEEEeCccccCHH--HHHHHHHHhhcCeeecCCCceeecCC
Q 003088 703 T----VSKLIGSPPGYVGYEEGG---LLTEAIRRRP-FTLLLLDEIEKAHPD--IFNILLQVFEDGHLTDSHGRRVSFKN 772 (849)
Q Consensus 703 ~----~~~l~g~~~g~vg~~~~~---~l~~~i~~~~-~~vl~lDEid~l~~~--~~~~Ll~~le~g~~~~~~g~~~~~~~ 772 (849)
. ...-+|.+....|..... .+...+.... ..||||||+|.+... .++.|+.+++...... ...+
T Consensus 94 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~------~~~~ 167 (387)
T 2v1u_A 94 RVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELG------DRVW 167 (387)
T ss_dssp HHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----------
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcC------CCce
Confidence 1 111123322222222211 1222333222 569999999999876 6777777765421000 0236
Q ss_pred eEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhcccc-EEEcCCCCHHHHccccC
Q 003088 773 ALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDE-VVVFRSLEKAQVCQLPL 848 (849)
Q Consensus 773 ~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~-~i~f~pl~~~~~~~I~~ 848 (849)
+++|+++|.... . ..+.+.+.+||.. .+.|+|++.+++.+|++
T Consensus 168 ~~~I~~t~~~~~--~-------------------------------~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~ 211 (387)
T 2v1u_A 168 VSLVGITNSLGF--V-------------------------------ENLEPRVKSSLGEVELVFPPYTAPQLRDILE 211 (387)
T ss_dssp CEEEEECSCSTT--S-------------------------------SSSCHHHHTTTTSEECCBCCCCHHHHHHHHH
T ss_pred EEEEEEECCCch--H-------------------------------hhhCHHHHhcCCCeEEeeCCCCHHHHHHHHH
Confidence 789999986420 0 1167889999975 89999999999888763
No 162
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.13 E-value=4.5e-10 Score=122.86 Aligned_cols=158 Identities=16% Similarity=0.275 Sum_probs=103.3
Q ss_pred ccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeecccccccccccccc
Q 003088 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLI 708 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~ 708 (849)
+.++|++.+++.+...+..+... ..+..+++|+||||||||++|++++..+ +.++....++....
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~----~~~~~~~ll~Gp~G~GKTTLa~~ia~~l---~~~~~~~sg~~~~~-------- 89 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMR----GEVLDHVLLAGPPGLGKTTLAHIIASEL---QTNIHVTSGPVLVK-------- 89 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHH----TCCCCCEEEESSTTSSHHHHHHHHHHHH---TCCEEEEETTTCCS--------
T ss_pred HHccCcHHHHHHHHHHHHHHHhc----CCCCCeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEechHhcC--------
Confidence 55889999999988887654221 1223459999999999999999999987 22333333221110
Q ss_pred CCCCCccccccCcchhHHHHh-CCCeEEEEeCccccCHHHHHHHHHHhhcCeeec-----CCCcee--ecCCeEEEEecC
Q 003088 709 GSPPGYVGYEEGGLLTEAIRR-RPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTD-----SHGRRV--SFKNALIVMTSN 780 (849)
Q Consensus 709 g~~~g~vg~~~~~~l~~~i~~-~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~-----~~g~~~--~~~~~~iI~tsn 780 (849)
.+.+...... ....|+||||++.+.+.+++.|+..++.+.+.. ...+.+ ....+.+|.+++
T Consensus 90 -----------~~~l~~~~~~~~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~ 158 (334)
T 1in4_A 90 -----------QGDMAAILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATT 158 (334)
T ss_dssp -----------HHHHHHHHHHCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEEES
T ss_pred -----------HHHHHHHHHHccCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecC
Confidence 1122222222 345799999999999999999999988754210 000111 123456666555
Q ss_pred CCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccccEEEcCCCCHHHHccccC
Q 003088 781 VGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQLPL 848 (849)
Q Consensus 781 ~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~I~~ 848 (849)
... .+++.+.+||...+.|.|++.+++.+|++
T Consensus 159 ~~~------------------------------------~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~ 190 (334)
T 1in4_A 159 RSG------------------------------------LLSSPLRSRFGIILELDFYTVKELKEIIK 190 (334)
T ss_dssp CGG------------------------------------GSCHHHHTTCSEEEECCCCCHHHHHHHHH
T ss_pred Ccc------------------------------------cCCHHHHHhcCceeeCCCCCHHHHHHHHH
Confidence 421 17889999998889999999999888763
No 163
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.12 E-value=1.3e-10 Score=134.90 Aligned_cols=136 Identities=15% Similarity=0.177 Sum_probs=86.3
Q ss_pred CCHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHhh----cCCCCCC----CCCccceeecCCCCchHHHHHHHHHHh
Q 003088 612 ITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSR----VGLKDPN----RPTAAMLFCGPTGVGKTELAKSLAACY 683 (849)
Q Consensus 612 ~~~~~~~~~~~l~~~l~~~i~Gq~~~i~~l~~~l~~~~----~g~~~~~----~p~~~lL~~Gp~GtGKt~lA~~la~~l 683 (849)
..|.++.++..+ +.++|++.+++.+...+.... .+...+. .+..++||+||||||||++|+++++.+
T Consensus 27 ~lW~ekyrP~~~-----~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 27 KLWTVKYAPTNL-----QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp CCHHHHTCCSSG-----GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCcccccCCCCH-----HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 356666655433 569999999999999886532 2232221 133469999999999999999999997
Q ss_pred cCCCCceeEeeccccccccccccccCCCCCccccccCcchhHH----HHhCCCeEEEEeCccccCHH---HHHHHHHHhh
Q 003088 684 FGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEA----IRRRPFTLLLLDEIEKAHPD---IFNILLQVFE 756 (849)
Q Consensus 684 ~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~----i~~~~~~vl~lDEid~l~~~---~~~~Ll~~le 756 (849)
+.+++.++++...........+....+. ....+.+..+ .....++||||||+|.+... ..+.|++.++
T Consensus 102 ---~~~~i~in~s~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~ 176 (516)
T 1sxj_A 102 ---GYDILEQNASDVRSKTLLNAGVKNALDN--MSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCR 176 (516)
T ss_dssp ---TCEEEEECTTSCCCHHHHHHTGGGGTTB--CCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHH
T ss_pred ---CCCEEEEeCCCcchHHHHHHHHHHHhcc--ccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHH
Confidence 6789999998765532222111100000 0000111111 11245689999999999764 3488888887
Q ss_pred c
Q 003088 757 D 757 (849)
Q Consensus 757 ~ 757 (849)
.
T Consensus 177 ~ 177 (516)
T 1sxj_A 177 K 177 (516)
T ss_dssp H
T ss_pred h
Confidence 6
No 164
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.12 E-value=2.7e-10 Score=121.22 Aligned_cols=156 Identities=25% Similarity=0.376 Sum_probs=101.3
Q ss_pred ccccccHHHHHHHHHHHHHh-------hcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccc
Q 003088 629 KRVIGQDEAVAAISRAVKRS-------RVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMER 701 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~~-------~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~ 701 (849)
+.++|+++++..+....... ..++.. |.+ ++|+||||||||+++++|+..+ ..+++.+++..+...
T Consensus 40 ~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~---~~g-vll~Gp~GtGKTtl~~~i~~~~---~~~~i~~~~~~~~~~ 112 (278)
T 1iy2_A 40 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARI---PKG-VLLVGPPGVGKTHLARAVAGEA---RVPFITASGSDFVEM 112 (278)
T ss_dssp GGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCC---CCE-EEEECCTTSSHHHHHHHHHHHT---TCCEEEEEHHHHHHS
T ss_pred HHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCC---CCe-EEEECCCcChHHHHHHHHHHHc---CCCEEEecHHHHHHH
Confidence 55788887777776655432 112222 223 9999999999999999999986 367888887765431
Q ss_pred cccccccCCCCCcccccc--CcchhHHHHhCCCeEEEEeCccccC--------------HHHHHHHHHHhhcCeeecCCC
Q 003088 702 HTVSKLIGSPPGYVGYEE--GGLLTEAIRRRPFTLLLLDEIEKAH--------------PDIFNILLQVFEDGHLTDSHG 765 (849)
Q Consensus 702 ~~~~~l~g~~~g~vg~~~--~~~l~~~i~~~~~~vl~lDEid~l~--------------~~~~~~Ll~~le~g~~~~~~g 765 (849)
+.+... ...+.+.......+++|+||+|.+. ....+.++..|+.+.
T Consensus 113 ------------~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~------ 174 (278)
T 1iy2_A 113 ------------FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE------ 174 (278)
T ss_dssp ------------TTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCC------
T ss_pred ------------HhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCC------
Confidence 111111 0112222233446899999998762 234566666666543
Q ss_pred ceeecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhh--ccccEEEcCCCCHHHH
Q 003088 766 RRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLN--RIDEVVVFRSLEKAQV 843 (849)
Q Consensus 766 ~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~--R~d~~i~f~pl~~~~~ 843 (849)
....+++++++|.+. .++|.++. ||+..+.|++++.++.
T Consensus 175 ---~~~~~i~~a~t~~p~------------------------------------~ld~~l~r~~rf~~~i~i~~p~~~~r 215 (278)
T 1iy2_A 175 ---KDTAIVVMAATNRPD------------------------------------ILDPALLRPGRFDRQIAIDAPDVKGR 215 (278)
T ss_dssp ---TTCCEEEEEEESCTT------------------------------------SSCHHHHSTTSSCCEEECCCCCHHHH
T ss_pred ---CCCCEEEEEecCCch------------------------------------hCCHhHcCCCcCCeEEEeCCcCHHHH
Confidence 123467777888631 16788886 8999999999999888
Q ss_pred ccccC
Q 003088 844 CQLPL 848 (849)
Q Consensus 844 ~~I~~ 848 (849)
.+|++
T Consensus 216 ~~il~ 220 (278)
T 1iy2_A 216 EQILR 220 (278)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87763
No 165
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.10 E-value=1.8e-10 Score=119.06 Aligned_cols=126 Identities=15% Similarity=0.276 Sum_probs=88.3
Q ss_pred cceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccccccCCCCCccccccCcchhHHHHhCCCeEEEEeCc
Q 003088 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRRRPFTLLLLDEI 740 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~i~~~~~~vl~lDEi 740 (849)
+++|+||||||||++|+++++.+...+.+++.+++.++..... . .+ ..+ ....+|||||+
T Consensus 54 ~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~~~--~---------------~~-~~~--~~~~vliiDe~ 113 (242)
T 3bos_A 54 AIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASIST--A---------------LL-EGL--EQFDLICIDDV 113 (242)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGSCG--G---------------GG-TTG--GGSSEEEEETG
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHH--H---------------HH-Hhc--cCCCEEEEecc
Confidence 5999999999999999999998865567788888876543210 0 00 011 23469999999
Q ss_pred cccCHHH--HHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHH
Q 003088 741 EKAHPDI--FNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELK 818 (849)
Q Consensus 741 d~l~~~~--~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~ 818 (849)
+.++... ++.|+..++... ......+|+++|.....+.
T Consensus 114 ~~~~~~~~~~~~l~~~l~~~~---------~~~~~~ii~~~~~~~~~~~------------------------------- 153 (242)
T 3bos_A 114 DAVAGHPLWEEAIFDLYNRVA---------EQKRGSLIVSASASPMEAG------------------------------- 153 (242)
T ss_dssp GGGTTCHHHHHHHHHHHHHHH---------HHCSCEEEEEESSCTTTTT-------------------------------
T ss_pred ccccCCHHHHHHHHHHHHHHH---------HcCCCeEEEEcCCCHHHHH-------------------------------
Confidence 9997765 888888886521 1113347777776432211
Q ss_pred hhCChHHhhccc--cEEEcCCCCHHHHcccc
Q 003088 819 AYFRPELLNRID--EVVVFRSLEKAQVCQLP 847 (849)
Q Consensus 819 ~~~~pell~R~d--~~i~f~pl~~~~~~~I~ 847 (849)
.+.+.+.+|+. .++.|+|++.+++.+++
T Consensus 154 -~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l 183 (242)
T 3bos_A 154 -FVLPDLVSRMHWGLTYQLQPMMDDEKLAAL 183 (242)
T ss_dssp -CCCHHHHHHHHHSEEEECCCCCGGGHHHHH
T ss_pred -HhhhhhhhHhhcCceEEeCCCCHHHHHHHH
Confidence 04478888986 78999999988887765
No 166
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.10 E-value=1.9e-09 Score=118.10 Aligned_cols=183 Identities=19% Similarity=0.188 Sum_probs=117.3
Q ss_pred CCccccHHHHHHHHHHHhcCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhh-----------
Q 003088 290 DPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM----------- 358 (849)
Q Consensus 290 ~~iiG~~~~i~~l~~~l~~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~----------- 358 (849)
+.++||+++++.+.+.+... ..++|+||+|+|||++++.+++.. + ++.+++....
T Consensus 12 ~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~----------~--~~~~~~~~~~~~~~~~~~~~~ 77 (350)
T 2qen_A 12 EDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER----------P--GILIDCRELYAERGHITREEL 77 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS----------S--EEEEEHHHHHHTTTCBCHHHH
T ss_pred HhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc----------C--cEEEEeecccccccCCCHHHH
Confidence 46899999999999988753 689999999999999999999875 1 2233332110
Q ss_pred -----c-------------------ccc---ccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHH
Q 003088 359 -----A-------------------GAK---ERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDI 411 (849)
Q Consensus 359 -----~-------------------~~~---~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~ 411 (849)
. +.. ....+...+..+.+.+...++.+|||||+|.+..... ....+.
T Consensus 78 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~------~~~~~~ 151 (350)
T 2qen_A 78 IKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGS------RGGKEL 151 (350)
T ss_dssp HHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTT------TTTHHH
T ss_pred HHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCc------cchhhH
Confidence 0 000 0012333333332333333489999999999953100 013455
Q ss_pred HHHHhhhhcC-CCeEEEEccChHHH-HHH---hhccHHHHhccc-cEEecCCCHHHHHHHHHHHHHHHHhhcCCccCHHH
Q 003088 412 SNLLKPSLGR-GELQCIASTTQDEH-RTQ---FEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEA 485 (849)
Q Consensus 412 ~~~L~~~le~-~~i~vI~at~~~~~-~~~---~~~d~al~~Rf~-~i~~~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~ 485 (849)
...|...++. .++.+|.+++...+ ... ......+..|+. .+.+.+++.++..+++..... ..+..++++.
T Consensus 152 ~~~L~~~~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~----~~~~~~~~~~ 227 (350)
T 2qen_A 152 LALFAYAYDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFR----EVNLDVPENE 227 (350)
T ss_dssp HHHHHHHHHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHH----TTTCCCCHHH
T ss_pred HHHHHHHHHhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHH----HcCCCCCHHH
Confidence 6667666553 57888887776542 121 122223444554 799999999999999876544 4466788888
Q ss_pred HHHHHHhhhcc
Q 003088 486 INAAVHLSARY 496 (849)
Q Consensus 486 l~~~a~ls~~~ 496 (849)
+..+...+.++
T Consensus 228 ~~~i~~~tgG~ 238 (350)
T 2qen_A 228 IEEAVELLDGI 238 (350)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHhCCC
Confidence 88888888774
No 167
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.07 E-value=8.1e-12 Score=146.73 Aligned_cols=200 Identities=11% Similarity=0.141 Sum_probs=114.8
Q ss_pred CCccccHHHHHHHHHHHhcCC-----------CCCCeEeCCCCChHHHHHHHHHHHhhhCCCCcc--ccCCeEEEeehhh
Q 003088 290 DPVIGRETEIQRIIQILCRRT-----------KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVF--LLSKRIMSLDMGL 356 (849)
Q Consensus 290 ~~iiG~~~~i~~l~~~l~~~~-----------~~niLL~GppGtGKT~la~~la~~l~~~~~p~~--~~~~~~~~l~~~~ 356 (849)
..++|+++.++.+.-.+.... ..|+||+||||||||++|+++|+.+.....+.. .....+.......
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~~ 374 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVRE 374 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSSG
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeeec
Confidence 468999988777765554432 128999999999999999999987733211110 0001111111111
Q ss_pred hhcccc--ccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCCC-----------
Q 003088 357 LMAGAK--ERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGE----------- 423 (849)
Q Consensus 357 ~~~~~~--~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~~----------- 423 (849)
...+.. ..| .+. ...++||||||++.+ ..+.++.|...|+.+.
T Consensus 375 ~~~g~~~~~~G--------~l~---~A~~gil~IDEid~l-------------~~~~q~~Ll~~le~~~i~i~~~g~~~~ 430 (595)
T 3f9v_A 375 KGTGEYYLEAG--------ALV---LADGGIAVIDEIDKM-------------RDEDRVAIHEAMEQQTVSIAKAGIVAK 430 (595)
T ss_dssp GGTSSCSEEEC--------HHH---HHSSSEECCTTTTCC-------------CSHHHHHHHHHHHSSSEEEESSSSEEE
T ss_pred cccccccccCC--------eeE---ecCCCcEEeehhhhC-------------CHhHhhhhHHHHhCCEEEEecCCcEEE
Confidence 111100 011 111 123569999999998 3456778888887543
Q ss_pred ----eEEEEccChHH--HHH------HhhccHHHHhccc--cEEecCCCHHHHHHHHHHHHHHHHh-hcCCccCHHHHHH
Q 003088 424 ----LQCIASTTQDE--HRT------QFEKDKALARRFQ--PVLISEPSQEDAVRILLGLREKYEA-HHNCKFTLEAINA 488 (849)
Q Consensus 424 ----i~vI~at~~~~--~~~------~~~~d~al~~Rf~--~i~~~~ps~~e~~~iL~~~~~~~~~-~~~~~i~~~~l~~ 488 (849)
+.+|+|||+.. |.. .+.++++|.+||+ .+..+.|+.+ ...|++.+...... ...-.++.+.+..
T Consensus 431 ~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e-~~~i~~~il~~~~~~~~~~~l~~~~l~~ 509 (595)
T 3f9v_A 431 LNARAAVIAAGNPKFGRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQ-DRELANYILDVHSGKSTKNIIDIDTLRK 509 (595)
T ss_dssp ECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHH-HHHHHHHHHTTTCCCSSSSTTCCTTTHH
T ss_pred ecCceEEEEEcCCcCCccCcccCchhccCCCHHHHhhCeEEEEeCCCCCHH-HHHHHHHHHHHhhccccccCCCHHHHHH
Confidence 46899999762 111 1278899999996 3555566666 66666655542110 1122355555665
Q ss_pred HHHhhhcccccCcchhhHHHHHHHHhh
Q 003088 489 AVHLSARYISDRYLPDKAIDLVDEAGS 515 (849)
Q Consensus 489 ~a~ls~~~~~~r~~p~~ai~ll~~a~~ 515 (849)
+..++..++. ..+++.+.+.+.+...
T Consensus 510 ~i~~ar~~~~-p~ls~ea~~~l~~~y~ 535 (595)
T 3f9v_A 510 YIAYARKYVT-PKITSEAKNLITDFFV 535 (595)
T ss_dssp HHHHHHHHHC-CCCCCCTHHHHHHHHT
T ss_pred HHHHHHHhCC-CCCCHHHHHHHHHHHH
Confidence 5555554432 2455666666666544
No 168
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.99 E-value=5.2e-10 Score=126.90 Aligned_cols=135 Identities=16% Similarity=0.304 Sum_probs=90.0
Q ss_pred cceeecCCCCchHHHHHHHHHHhcCC--CCceeEeeccccccccccccccCCCCCccccccCcchhHHHHhCCCeEEEEe
Q 003088 661 AMLFCGPTGVGKTELAKSLAACYFGS--ESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRRRPFTLLLLD 738 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~l~~~--~~~~i~i~~~~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~i~~~~~~vl~lD 738 (849)
+++|+||||||||++|+++++.+... +.+++.+++..+..... ..+.. .....+..... ....|||||
T Consensus 132 ~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~-~~~~~--------~~~~~~~~~~~-~~~~vL~ID 201 (440)
T 2z4s_A 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLV-DSMKE--------GKLNEFREKYR-KKVDILLID 201 (440)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHH-HHHHT--------TCHHHHHHHHT-TTCSEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHH-HHHHc--------ccHHHHHHHhc-CCCCEEEEe
Confidence 49999999999999999999987432 56788888877643210 00000 00011222221 145799999
Q ss_pred CccccCH--HHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHH
Q 003088 739 EIEKAHP--DIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEE 816 (849)
Q Consensus 739 Eid~l~~--~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~ 816 (849)
|++.+.. ..++.|+..++... ..+..+|+||+..+..+.
T Consensus 202 Ei~~l~~~~~~q~~l~~~l~~l~----------~~~~~iIitt~~~~~~l~----------------------------- 242 (440)
T 2z4s_A 202 DVQFLIGKTGVQTELFHTFNELH----------DSGKQIVICSDREPQKLS----------------------------- 242 (440)
T ss_dssp CGGGGSSCHHHHHHHHHHHHHHH----------TTTCEEEEEESSCGGGCS-----------------------------
T ss_pred CcccccCChHHHHHHHHHHHHHH----------HCCCeEEEEECCCHHHHH-----------------------------
Confidence 9999986 78899998886511 113456667776543321
Q ss_pred HHhhCChHHhhccc--cEEEcCCCCHHHHcccc
Q 003088 817 LKAYFRPELLNRID--EVVVFRSLEKAQVCQLP 847 (849)
Q Consensus 817 l~~~~~pell~R~d--~~i~f~pl~~~~~~~I~ 847 (849)
.+.+.|++||+ .++.|.|++.+++.+|+
T Consensus 243 ---~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL 272 (440)
T 2z4s_A 243 ---EFQDRLVSRFQMGLVAKLEPPDEETRKSIA 272 (440)
T ss_dssp ---SCCHHHHHHHHSSBCCBCCCCCHHHHHHHH
T ss_pred ---HHHHHHHhhccCCeEEEeCCCCHHHHHHHH
Confidence 16788999995 78899999998887775
No 169
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.98 E-value=7.4e-10 Score=122.96 Aligned_cols=171 Identities=13% Similarity=0.180 Sum_probs=109.3
Q ss_pred ccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCC---CCceeEeeccccccccc--
Q 003088 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGS---ESSMLRLDMSEYMERHT-- 703 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~---~~~~i~i~~~~~~~~~~-- 703 (849)
+.++|++..++.+...+.....+. +..+++|+||+|||||++++.+++.+... +.+++.++|........
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~~~-----~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 94 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYREE-----KPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVL 94 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGGTC-----CCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCC-----CCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHH
Confidence 568999999999888776432221 12359999999999999999999887332 56788888865432111
Q ss_pred --cccccCCCCCccccccC---cchhHHHHhCC-CeEEEEeCccccC----HHHHHHHHHHhhcCeeecCCCceeecCCe
Q 003088 704 --VSKLIGSPPGYVGYEEG---GLLTEAIRRRP-FTLLLLDEIEKAH----PDIFNILLQVFEDGHLTDSHGRRVSFKNA 773 (849)
Q Consensus 704 --~~~l~g~~~g~vg~~~~---~~l~~~i~~~~-~~vl~lDEid~l~----~~~~~~Ll~~le~g~~~~~~g~~~~~~~~ 773 (849)
....+|.+....|.... ..+...+.... ..||+|||++.+. .+++..|+..++.. ...++
T Consensus 95 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~----------~~~~~ 164 (386)
T 2qby_A 95 ADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEV----------NKSKI 164 (386)
T ss_dssp HHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSC----------CC--E
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhc----------CCCeE
Confidence 11112222212222111 12333344333 6799999999985 56788888888652 11367
Q ss_pred EEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCChHHhhccc-cEEEcCCCCHHHHcccc
Q 003088 774 LIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRID-EVVVFRSLEKAQVCQLP 847 (849)
Q Consensus 774 ~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~pell~R~d-~~i~f~pl~~~~~~~I~ 847 (849)
.+|+++|.... ...+.+.+.+||. ..+.|+|++.+++.+|+
T Consensus 165 ~~I~~~~~~~~---------------------------------~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il 206 (386)
T 2qby_A 165 SFIGITNDVKF---------------------------------VDLLDPRVKSSLSEEEIIFPPYNAEELEDIL 206 (386)
T ss_dssp EEEEEESCGGG---------------------------------GGGCTTHHHHTTTTEEEEECCCCHHHHHHHH
T ss_pred EEEEEECCCCh---------------------------------HhhhCHHHhccCCCeeEEeCCCCHHHHHHHH
Confidence 78888885321 0115677888886 48999999999988776
No 170
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.93 E-value=4.6e-09 Score=115.15 Aligned_cols=178 Identities=17% Similarity=0.191 Sum_probs=107.1
Q ss_pred CCccccHHHHHHHHHHHhcCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhh-----------
Q 003088 290 DPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM----------- 358 (849)
Q Consensus 290 ~~iiG~~~~i~~l~~~l~~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~----------- 358 (849)
+.++||+++++.+.. +.. ..++|+||+|+|||++++.+++.+.. .++.+++....
T Consensus 13 ~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~ 78 (357)
T 2fna_A 13 KDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELNL----------PYIYLDLRKFEERNYISYKDFL 78 (357)
T ss_dssp GGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHTC----------CEEEEEGGGGTTCSCCCHHHHH
T ss_pred HHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcCC----------CEEEEEchhhccccCCCHHHHH
Confidence 468999999999999 755 58999999999999999999988621 12333332110
Q ss_pred ---------------------c---ccc------ccch---HHHHHHHHHHHHHhc--CCeEEEEcCcchhhhCCCCCCC
Q 003088 359 ---------------------A---GAK------ERGE---LEARVTTLISEIQKS--GDVILFIDEVHTLIGSGTVGRG 403 (849)
Q Consensus 359 ---------------------~---~~~------~~g~---~e~~l~~l~~~~~~~--~~~ILfIDEi~~l~~~~~~~~~ 403 (849)
. +.. ..+. ....+..+++.+... ++.+|||||+|.+....
T Consensus 79 ~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~----- 153 (357)
T 2fna_A 79 LELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLR----- 153 (357)
T ss_dssp HHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCT-----
T ss_pred HHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccC-----
Confidence 0 000 0000 001233444444432 48999999999995421
Q ss_pred CCCccHHHHHHHhhhhcC-CCeEEEEccChHHH-HHH---hhccHHHHhcc-ccEEecCCCHHHHHHHHHHHHHHHHhhc
Q 003088 404 NKGTGLDISNLLKPSLGR-GELQCIASTTQDEH-RTQ---FEKDKALARRF-QPVLISEPSQEDAVRILLGLREKYEAHH 477 (849)
Q Consensus 404 ~~~~~~~~~~~L~~~le~-~~i~vI~at~~~~~-~~~---~~~d~al~~Rf-~~i~~~~ps~~e~~~iL~~~~~~~~~~~ 477 (849)
+.++...|....+. .++.+|.+++.... ... ......+..|+ ..+.+.+++.++..+++...... .
T Consensus 154 ----~~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~----~ 225 (357)
T 2fna_A 154 ----GVNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQE----A 225 (357)
T ss_dssp ----TCCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHH----H
T ss_pred ----chhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHH----c
Confidence 12234455544443 46778887776542 121 11222344465 57999999999999999875542 2
Q ss_pred CCccCHHHHHHHHHhhhcc
Q 003088 478 NCKFTLEAINAAVHLSARY 496 (849)
Q Consensus 478 ~~~i~~~~l~~~a~ls~~~ 496 (849)
+...++. ..+...+.++
T Consensus 226 ~~~~~~~--~~i~~~t~G~ 242 (357)
T 2fna_A 226 DIDFKDY--EVVYEKIGGI 242 (357)
T ss_dssp TCCCCCH--HHHHHHHCSC
T ss_pred CCCCCcH--HHHHHHhCCC
Confidence 3444433 5566666653
No 171
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.88 E-value=8.5e-09 Score=114.94 Aligned_cols=179 Identities=18% Similarity=0.269 Sum_probs=114.5
Q ss_pred CCCccccHHHHHHHHHHHhc--CCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhc-------
Q 003088 289 IDPVIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA------- 359 (849)
Q Consensus 289 l~~iiG~~~~i~~l~~~l~~--~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~------- 359 (849)
++.++|....++.+.+.+.. ....+++|+|++|||||++|+++....... +.+++.+|+..+..
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~-------~~~fv~v~~~~~~~~~~~~el 208 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRS-------KEPFVALNVASIPRDIFEAEL 208 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHSTTT-------TSCEEEEETTTSCHHHHHHHH
T ss_pred chhhhhccHHhhHHHHHHHHhcCCCCCeEEecCCCcCHHHHHHHHHHhcCCC-------CCCeEEEecCCCCHHHHHHHh
Confidence 45788988888887776533 455678999999999999999999876433 45667777665321
Q ss_pred -cccccchHHHH---HHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCC-------------
Q 003088 360 -GAKERGELEAR---VTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG------------- 422 (849)
Q Consensus 360 -~~~~~g~~e~~---l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~------------- 422 (849)
|. ..|.+... ...+++ ...+++||||||+.| ..+.+..|+.+++.+
T Consensus 209 fg~-~~g~~tga~~~~~g~~~---~a~~gtlfldei~~l-------------~~~~q~~Ll~~l~~~~~~~~g~~~~~~~ 271 (387)
T 1ny5_A 209 FGY-EKGAFTGAVSSKEGFFE---LADGGTLFLDEIGEL-------------SLEAQAKLLRVIESGKFYRLGGRKEIEV 271 (387)
T ss_dssp HCB-CTTSSTTCCSCBCCHHH---HTTTSEEEEESGGGC-------------CHHHHHHHHHHHHHSEECCBTCCSBEEC
T ss_pred cCC-CCCCCCCcccccCCcee---eCCCcEEEEcChhhC-------------CHHHHHHHHHHHhcCcEEeCCCCceeec
Confidence 10 00111000 011222 234579999999999 567888888888743
Q ss_pred CeEEEEccChHHHHH--HhhccHHHHhccccEEecCCCH----HHHHHHHHHHHHHHHhhcC---CccCHHHHHHHHH
Q 003088 423 ELQCIASTTQDEHRT--QFEKDKALARRFQPVLISEPSQ----EDAVRILLGLREKYEAHHN---CKFTLEAINAAVH 491 (849)
Q Consensus 423 ~i~vI~at~~~~~~~--~~~~d~al~~Rf~~i~~~~ps~----~e~~~iL~~~~~~~~~~~~---~~i~~~~l~~~a~ 491 (849)
++++|+|||.+-... .-...+.|..|+..+.+..|+. ++...++..+.+++....+ ..++++++..+..
T Consensus 272 ~~rii~at~~~l~~~~~~g~fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~ 349 (387)
T 1ny5_A 272 NVRILAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLS 349 (387)
T ss_dssp CCEEEEEESSCHHHHHHTTSSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHH
T ss_pred cEEEEEeCCCCHHHHHHcCCccHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHh
Confidence 468999999753111 1123466777887655555533 5666666666666544333 3588988877654
No 172
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.87 E-value=1.9e-08 Score=111.26 Aligned_cols=177 Identities=17% Similarity=0.254 Sum_probs=113.2
Q ss_pred CccccHHHHHHHHHHHh--cCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhccc-------
Q 003088 291 PVIGRETEIQRIIQILC--RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGA------- 361 (849)
Q Consensus 291 ~iiG~~~~i~~l~~~l~--~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~~~------- 361 (849)
.++|....+..+...+. .....+++++|++||||+.+|+.+....... + .++.+++..+-...
T Consensus 130 ~~ig~s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~~s~r~-------~-~fv~vnc~~~~~~~~~~~lfg 201 (368)
T 3dzd_A 130 EFVGEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRYSGRK-------G-AFVDLNCASIPQELAESELFG 201 (368)
T ss_dssp CCCCCSHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHHHHCCC-------S-CEEEEESSSSCTTTHHHHHHE
T ss_pred cccccchHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHHhcccc-------C-CcEEEEcccCChHHHHHHhcC
Confidence 57788777776666542 2455689999999999999999998765321 2 26777776532110
Q ss_pred cccchHHHH---HHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCC-------------CeE
Q 003088 362 KERGELEAR---VTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-------------ELQ 425 (849)
Q Consensus 362 ~~~g~~e~~---l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~-------------~i~ 425 (849)
...|.+... -...++ ...+++||||||+.| ..+.+..|+.+++.+ +++
T Consensus 202 ~~~g~~tga~~~~~g~~~---~a~~gtlfldei~~l-------------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~r 265 (368)
T 3dzd_A 202 HEKGAFTGALTRKKGKLE---LADQGTLFLDEVGEL-------------DQRVQAKLLRVLETGSFTRLGGNQKIEVDIR 265 (368)
T ss_dssp ECSCSSSSCCCCEECHHH---HTTTSEEEEETGGGS-------------CHHHHHHHHHHHHHSEECCBTCCCBEECCCE
T ss_pred ccccccCCcccccCChHh---hcCCCeEEecChhhC-------------CHHHHHHHHHHHHhCCcccCCCCcceeeeeE
Confidence 000100000 001222 234569999999999 567888898888754 467
Q ss_pred EEEccChHHHHHH--hhccHHHHhcccc--EEecCCCH--HHHHHHHHHHHHHHHhhcC---CccCHHHHHHHHH
Q 003088 426 CIASTTQDEHRTQ--FEKDKALARRFQP--VLISEPSQ--EDAVRILLGLREKYEAHHN---CKFTLEAINAAVH 491 (849)
Q Consensus 426 vI~at~~~~~~~~--~~~d~al~~Rf~~--i~~~~ps~--~e~~~iL~~~~~~~~~~~~---~~i~~~~l~~~a~ 491 (849)
+|++||.+-.... -...+.|..|+.. |.+|++.+ +|...++..+..++....+ ..++++++..+..
T Consensus 266 ii~at~~~l~~~v~~g~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~ 340 (368)
T 3dzd_A 266 VISATNKNLEEEIKKGNFREDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMK 340 (368)
T ss_dssp EEEEESSCHHHHHHTTSSCHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHT
T ss_pred EEEecCCCHHHHHHcCCccHHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHh
Confidence 9999997642211 1233577788875 55666644 6777777777776654433 4689998877654
No 173
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.78 E-value=1.1e-08 Score=103.13 Aligned_cols=100 Identities=15% Similarity=0.165 Sum_probs=60.5
Q ss_pred HHHhhcCCCCccccHH----HHHHHHHHHhcCC----CCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEee
Q 003088 282 ARASEELIDPVIGRET----EIQRIIQILCRRT----KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD 353 (849)
Q Consensus 282 ~~~~~~~l~~iiG~~~----~i~~l~~~l~~~~----~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~ 353 (849)
..+++..|+++++.+. .++.+..++.... ..+++|+||||||||++|++++..+... +..++.++
T Consensus 17 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~-------~~~~~~~~ 89 (202)
T 2w58_A 17 REILRASLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKR-------NVSSLIVY 89 (202)
T ss_dssp GGGGCCCTTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTT-------TCCEEEEE
T ss_pred HHHHcCCHhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc-------CCeEEEEE
Confidence 3445567788876542 4444555554432 2789999999999999999999998654 34455555
Q ss_pred hhhhhccc---cccchHHHHHHHHHHHHHhcCCeEEEEcCcchh
Q 003088 354 MGLLMAGA---KERGELEARVTTLISEIQKSGDVILFIDEVHTL 394 (849)
Q Consensus 354 ~~~~~~~~---~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l 394 (849)
+..+.... ...+. +..+++.+... .+|||||++..
T Consensus 90 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~--~~lilDei~~~ 127 (202)
T 2w58_A 90 VPELFRELKHSLQDQT----MNEKLDYIKKV--PVLMLDDLGAE 127 (202)
T ss_dssp HHHHHHHHHHC---CC----CHHHHHHHHHS--SEEEEEEECCC
T ss_pred hHHHHHHHHHHhccch----HHHHHHHhcCC--CEEEEcCCCCC
Confidence 54432110 00111 12233334433 49999999765
No 174
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=98.77 E-value=9.6e-09 Score=97.96 Aligned_cols=64 Identities=31% Similarity=0.491 Sum_probs=61.7
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHhhhcCCchhhHHHHhhcCCHHHHHHHHHHhh
Q 003088 170 PFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRL 233 (849)
Q Consensus 170 ~~s~~~~~vl~~A~~~a~~~g~~~I~~ehlLlall~~~~~~a~~iL~~~gv~~~~l~~~~~~~~ 233 (849)
+||+.++++|+.|..+|+++||.+|++||||+||+.++++.+.++|+++|+|.+.++..+...+
T Consensus 7 ~~T~~a~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~~~~~iL~~~gvd~~~l~~~l~~~l 70 (145)
T 3fes_A 7 RFTQRAKKAIDLAFESAKSLGHNIVGSEHILLGLLREEEGIAAKVLSKVGFTEAYLEGKIVDME 70 (145)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHCSSHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCCChHHHHHHHcCCCHHHHHHHHHHHH
Confidence 6999999999999999999999999999999999999999999999999999999999888776
No 175
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=98.73 E-value=1.6e-08 Score=96.51 Aligned_cols=64 Identities=28% Similarity=0.457 Sum_probs=61.4
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHhhhcCCchhhHHHHhhcCCHHHHHHHHHHhh
Q 003088 170 PFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRL 233 (849)
Q Consensus 170 ~~s~~~~~vl~~A~~~a~~~g~~~I~~ehlLlall~~~~~~a~~iL~~~gv~~~~l~~~~~~~~ 233 (849)
.||+.++++|+.|.++|+++||.||++||||+||+.++++.+.++|+++|+|.+.++..+.+.+
T Consensus 6 ~~t~~~~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~~~~~iL~~~gv~~~~l~~~l~~~l 69 (146)
T 3fh2_A 6 RFTDRARRVIVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESMGISLDAVRQEVEEII 69 (146)
T ss_dssp GBCHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCCSHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHhCCCChHHHHHHHcCCCHHHHHHHHHHHh
Confidence 5999999999999999999999999999999999999899999999999999999999888776
No 176
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.72 E-value=3.5e-08 Score=97.49 Aligned_cols=104 Identities=16% Similarity=0.193 Sum_probs=67.7
Q ss_pred cceeecCCCCchHHHHHHHHHHhc-CCCCceeEeeccccccccccccccCCCCCccccccCcchhHHHHhCCCeEEEEeC
Q 003088 661 AMLFCGPTGVGKTELAKSLAACYF-GSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRRRPFTLLLLDE 739 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~l~-~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~i~~~~~~vl~lDE 739 (849)
.++|+||+|||||+++++++..+. ..+..++.+++.++...... .+. ......+...+. ...+|+|||
T Consensus 40 ~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~-------~~~~~~~~~~~~--~~~llilDE 108 (180)
T 3ec2_A 40 GLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKH--LMD-------EGKDTKFLKTVL--NSPVLVLDD 108 (180)
T ss_dssp EEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHHH--HHH-------HTCCSHHHHHHH--TCSEEEEET
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHH--Hhc-------CchHHHHHHHhc--CCCEEEEeC
Confidence 499999999999999999999874 33445666776665432110 000 000112223333 345999999
Q ss_pred cc--ccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCchh
Q 003088 740 IE--KAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTT 785 (849)
Q Consensus 740 id--~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~ 785 (849)
++ .+++..++.|+++++... ..+..+|+|||..++.
T Consensus 109 ~~~~~~~~~~~~~l~~ll~~~~----------~~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 109 LGSERLSDWQRELISYIITYRY----------NNLKSTIITTNYSLQR 146 (180)
T ss_dssp CSSSCCCHHHHHHHHHHHHHHH----------HTTCEEEEECCCCSCC
T ss_pred CCCCcCCHHHHHHHHHHHHHHH----------HcCCCEEEEcCCChhH
Confidence 98 577888888888886521 1245788999987654
No 177
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.72 E-value=2e-08 Score=128.13 Aligned_cols=84 Identities=15% Similarity=0.239 Sum_probs=53.2
Q ss_pred ceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccccccCCC-CCcccc----ccC--cchhHHHHhCCCeE
Q 003088 662 MLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSP-PGYVGY----EEG--GLLTEAIRRRPFTL 734 (849)
Q Consensus 662 lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~-~g~vg~----~~~--~~l~~~i~~~~~~v 734 (849)
+|+|||||||||++|++++......+.+.+.++..+..+.... .-+|-. ..|+++ +|. ..+....++...++
T Consensus 1085 ~l~~G~~g~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~-~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~ 1163 (1706)
T 3cmw_A 1085 VEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYA-RKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDV 1163 (1706)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHH-HHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSE
T ss_pred EEEEcCCCCChHHHHHHHHHHhhhcCCceeEEEcccchHHHHH-HHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeE
Confidence 9999999999999999998765444667777777664432111 122221 223443 221 12333345677899
Q ss_pred EEEeCccccCHH
Q 003088 735 LLLDEIEKAHPD 746 (849)
Q Consensus 735 l~lDEid~l~~~ 746 (849)
+|+||++.+.|.
T Consensus 1164 i~~d~~~al~~~ 1175 (1706)
T 3cmw_A 1164 IVVDSVAALTPK 1175 (1706)
T ss_dssp EEESCGGGCCCH
T ss_pred EEeCchHhcCcc
Confidence 999999877554
No 178
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.72 E-value=4.3e-08 Score=108.96 Aligned_cols=143 Identities=16% Similarity=0.132 Sum_probs=84.7
Q ss_pred CCCccccHHHHHHHHHHHhcCC-----CCCCeEeCCCCChHHHHHHHH-HHHhhhCCCCccccCCeEEEeehh----hhh
Q 003088 289 IDPVIGRETEIQRIIQILCRRT-----KNNPILLGESGVGKTAIAEGL-AIRIVQAEVPVFLLSKRIMSLDMG----LLM 358 (849)
Q Consensus 289 l~~iiG~~~~i~~l~~~l~~~~-----~~niLL~GppGtGKT~la~~l-a~~l~~~~~p~~~~~~~~~~l~~~----~~~ 358 (849)
+.+++|++...+.+.-.+.... .-|+||.|+||| ||.+|+++ ++.+.. .++..... .+.
T Consensus 212 IapI~G~e~vK~aLll~L~GG~~k~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR----------~~ft~g~~ss~~gLt 280 (506)
T 3f8t_A 212 IAPLPGAEEVGKMLALQLFSCVGKNSERLHVLLAGYPVV-CSEILHHVLDHLAPR----------GVYVDLRRTELTDLT 280 (506)
T ss_dssp HCCSTTCHHHHHHHHHHHTTCCSSGGGCCCEEEESCHHH-HHHHHHHHHHHTCSS----------EEEEEGGGCCHHHHS
T ss_pred hcccCCCHHHHHHHHHHHcCCccccCCceeEEEECCCCh-HHHHHHHHHHHhCCC----------eEEecCCCCCccCce
Confidence 4459999987666666554432 348999999999 99999999 654411 11211111 011
Q ss_pred ccccccch--HHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCC-----------CeE
Q 003088 359 AGAKERGE--LEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-----------ELQ 425 (849)
Q Consensus 359 ~~~~~~g~--~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~-----------~i~ 425 (849)
.. .++. +.-+-. .+....+.||||||++.+ ....+..|+..|+.+ ++.
T Consensus 281 ~s--~r~~tG~~~~~G----~l~LAdgGvl~lDEIn~~-------------~~~~qsaLlEaMEe~~VtI~G~~lparf~ 341 (506)
T 3f8t_A 281 AV--LKEDRGWALRAG----AAVLADGGILAVDHLEGA-------------PEPHRWALMEAMDKGTVTVDGIALNARCA 341 (506)
T ss_dssp EE--EEESSSEEEEEC----HHHHTTTSEEEEECCTTC-------------CHHHHHHHHHHHHHSEEEETTEEEECCCE
T ss_pred EE--EEcCCCcccCCC----eeEEcCCCeeehHhhhhC-------------CHHHHHHHHHHHhCCcEEECCEEcCCCeE
Confidence 10 1000 000000 111133569999999999 566788888888854 478
Q ss_pred EEEccChHHHH------HHhhccHHHHhcccc--EEecCCCHHH
Q 003088 426 CIASTTQDEHR------TQFEKDKALARRFQP--VLISEPSQED 461 (849)
Q Consensus 426 vI~at~~~~~~------~~~~~d~al~~Rf~~--i~~~~ps~~e 461 (849)
+|+|+|+.+.- ..+.+.+++++||+. +.++.|+.++
T Consensus 342 VIAA~NP~~~yd~~~s~~~~~Lp~alLDRFDLi~i~~d~pd~e~ 385 (506)
T 3f8t_A 342 VLAAINPGEQWPSDPPIARIDLDQDFLSHFDLIAFLGVDPRPGE 385 (506)
T ss_dssp EEEEECCCC--CCSCGGGGCCSCHHHHTTCSEEEETTC------
T ss_pred EEEEeCcccccCCCCCccccCCChHHhhheeeEEEecCCCChhH
Confidence 99999987510 124788999999974 4455555443
No 179
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=98.71 E-value=2.6e-08 Score=95.17 Aligned_cols=65 Identities=18% Similarity=0.300 Sum_probs=62.0
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHhhhcCCchhhHHHHhhcCCHHHHHHHHHHhhh
Q 003088 170 PFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQ 234 (849)
Q Consensus 170 ~~s~~~~~vl~~A~~~a~~~g~~~I~~ehlLlall~~~~~~a~~iL~~~gv~~~~l~~~~~~~~~ 234 (849)
.||+.++++|+.|..+|+++||.+|++||||+||+.++++.+.++|+++|+|.+.++..+...+.
T Consensus 5 ~~t~~~~~~l~~A~~~A~~~~~~~i~~eHlLlaLl~~~~~~~~~iL~~~g~~~~~l~~~l~~~l~ 69 (148)
T 1khy_A 5 RLTNKFQLALADAQSLALGHDNQFIEPLHLMSALLNQEGGSVSPLLTSAGINAGQLRTDINQALN 69 (148)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHTCTTCSHHHHHHHHTCCHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHcCCCchHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999998887773
No 180
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.70 E-value=1.6e-08 Score=100.05 Aligned_cols=54 Identities=20% Similarity=0.234 Sum_probs=40.2
Q ss_pred HHhhcCCCCcccc----HHHHHHHHHHHhc---CCCCCCeEeCCCCChHHHHHHHHHHHhh
Q 003088 283 RASEELIDPVIGR----ETEIQRIIQILCR---RTKNNPILLGESGVGKTAIAEGLAIRIV 336 (849)
Q Consensus 283 ~~~~~~l~~iiG~----~~~i~~l~~~l~~---~~~~niLL~GppGtGKT~la~~la~~l~ 336 (849)
++++.+|+++++. +..++.+.+++.. ....+++|+||+|||||+++++++..+.
T Consensus 3 r~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 3 RYWNANLDTYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp SCTTCCSSSCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred hhhhCccccccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5677788888863 3444445444432 3467899999999999999999999985
No 181
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=98.67 E-value=2.8e-08 Score=96.96 Aligned_cols=63 Identities=19% Similarity=0.180 Sum_probs=60.5
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHhhhcCCchhhHHHHhhcCCHHHHHHHHHHhh
Q 003088 170 PFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRL 233 (849)
Q Consensus 170 ~~s~~~~~vl~~A~~~a~~~g~~~I~~ehlLlall~~~~~~a~~iL~~~gv~~~~l~~~~~~~~ 233 (849)
.||+.++++|+.|.++|+++|+.+|++||||+||++++++.+.++|+++|+|.+.+++.+. .+
T Consensus 24 kfT~~a~~aL~~A~~~A~~~~h~~I~~EHLLlaLL~~~~~~a~~iL~~~gvd~~~l~~~l~-~l 86 (171)
T 3zri_A 24 KLNAQSKLALEQAASLCIERQHPEVTLEHYLDVLLDNPLSDVRLVLKQAGLEVDQVKQAIA-ST 86 (171)
T ss_dssp HBCHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHTTCTTSHHHHHHHHTTCCHHHHHHHHH-HH
T ss_pred HcCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHH-HH
Confidence 4999999999999999999999999999999999999999999999999999999999888 66
No 182
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=98.65 E-value=3.6e-08 Score=94.51 Aligned_cols=64 Identities=30% Similarity=0.414 Sum_probs=61.5
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHhhhcCCchhhHHHHhhcCCHHHHHHHHHHhh
Q 003088 170 PFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRL 233 (849)
Q Consensus 170 ~~s~~~~~vl~~A~~~a~~~g~~~I~~ehlLlall~~~~~~a~~iL~~~gv~~~~l~~~~~~~~ 233 (849)
.||+.++++|+.|..+|.++||.+|++||||+||+.++++.+.++|+++|+|.+.++..+...+
T Consensus 5 ~~t~~~~~al~~A~~~A~~~~h~~i~~eHlLlaLl~~~~~~~~~iL~~~g~~~~~l~~~l~~~l 68 (150)
T 2y1q_A 5 RFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEVESLI 68 (150)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHCSSHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred hhCHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCCCHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 5999999999999999999999999999999999999999999999999999999999888776
No 183
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.64 E-value=3.4e-08 Score=110.83 Aligned_cols=177 Identities=17% Similarity=0.189 Sum_probs=105.6
Q ss_pred ccccccHHHHHHHHHHH-HHhhcCCCCCCCCCcccee--ecCCCCchHHHHHHHHHHhcC------CCCceeEeeccccc
Q 003088 629 KRVIGQDEAVAAISRAV-KRSRVGLKDPNRPTAAMLF--CGPTGVGKTELAKSLAACYFG------SESSMLRLDMSEYM 699 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l-~~~~~g~~~~~~p~~~lL~--~Gp~GtGKt~lA~~la~~l~~------~~~~~i~i~~~~~~ 699 (849)
..++|++..++.+...+ .....+.. ....++++ +||+|+|||++++.+++.+.. .+..++.++|....
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~---~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAG---LSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAP 98 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSC---BCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCC
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCC---CCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCC
Confidence 56899999999998888 76544311 11235888 999999999999999987632 13457788875432
Q ss_pred ccc-cccc---ccCCCCCccccccC---cchhHHHHh-CCCeEEEEeCccccC------HHHHHHHHHHhhcCeeecCCC
Q 003088 700 ERH-TVSK---LIGSPPGYVGYEEG---GLLTEAIRR-RPFTLLLLDEIEKAH------PDIFNILLQVFEDGHLTDSHG 765 (849)
Q Consensus 700 ~~~-~~~~---l~g~~~g~vg~~~~---~~l~~~i~~-~~~~vl~lDEid~l~------~~~~~~Ll~~le~g~~~~~~g 765 (849)
... .... .+|.+....|.... ..+...+.. ....||+|||++.+. .+++..|++.+++... .+
T Consensus 99 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~---~~ 175 (412)
T 1w5s_A 99 NLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPS---RD 175 (412)
T ss_dssp SHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCC---TT
T ss_pred CHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhccc---CC
Confidence 211 1111 12322111111111 112233332 345799999999984 4777777777765210 00
Q ss_pred ceeecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHHHhhCC---hHHhhccccEEEcCCCCHHH
Q 003088 766 RRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFR---PELLNRIDEVVVFRSLEKAQ 842 (849)
Q Consensus 766 ~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l~~~~~---pell~R~d~~i~f~pl~~~~ 842 (849)
...++.||+++|... + ...+. +.+..++...+.|+||+.++
T Consensus 176 ---~~~~v~lI~~~~~~~--~-------------------------------~~~l~~~~~~~~~~~~~~i~l~~l~~~e 219 (412)
T 1w5s_A 176 ---GVNRIGFLLVASDVR--A-------------------------------LSYMREKIPQVESQIGFKLHLPAYKSRE 219 (412)
T ss_dssp ---SCCBEEEEEEEEETH--H-------------------------------HHHHHHHCHHHHTTCSEEEECCCCCHHH
T ss_pred ---CCceEEEEEEecccc--H-------------------------------HHHHhhhcchhhhhcCCeeeeCCCCHHH
Confidence 013677888876421 0 00022 55666665558999999998
Q ss_pred Hcccc
Q 003088 843 VCQLP 847 (849)
Q Consensus 843 ~~~I~ 847 (849)
+.+|+
T Consensus 220 ~~~ll 224 (412)
T 1w5s_A 220 LYTIL 224 (412)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88776
No 184
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.63 E-value=2.8e-08 Score=100.08 Aligned_cols=107 Identities=20% Similarity=0.246 Sum_probs=67.3
Q ss_pred cceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccccccCCCCCccccccCcchhHHHHhCCCeEEEEeCc
Q 003088 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRRRPFTLLLLDEI 740 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~i~~~~~~vl~lDEi 740 (849)
+++|+||+|||||++|++++..+...+.+++.++++++...... .+.. .....+.+.+... .+|||||+
T Consensus 56 ~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-------~~~~~~~~~~~~~--~~lilDei 124 (202)
T 2w58_A 56 GLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKH--SLQD-------QTMNEKLDYIKKV--PVLMLDDL 124 (202)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHH--C----------CCCHHHHHHHHHS--SEEEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHHH--Hhcc-------chHHHHHHHhcCC--CEEEEcCC
Confidence 59999999999999999999998766777888888765432110 0110 0011223334433 49999999
Q ss_pred cccC--HHHHHHHH-HHhhcCeeecCCCceeecCCeEEEEecCCCchhhhc
Q 003088 741 EKAH--PDIFNILL-QVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAK 788 (849)
Q Consensus 741 d~l~--~~~~~~Ll-~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~~ 788 (849)
+... +..+..|+ .+++... ..+..+|+|||..++.+..
T Consensus 125 ~~~~~~~~~~~~ll~~~l~~~~----------~~~~~~i~tsn~~~~~l~~ 165 (202)
T 2w58_A 125 GAEAMSSWVRDDVFGPILQYRM----------FENLPTFFTSNFDMQQLAH 165 (202)
T ss_dssp CCC---CCGGGTTHHHHHHHHH----------HTTCCEEEEESSCHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHHHH----------hCCCCEEEEcCCCHHHHHH
Confidence 7643 33455444 3554310 1245799999998776653
No 185
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.61 E-value=8.6e-08 Score=91.72 Aligned_cols=90 Identities=17% Similarity=0.211 Sum_probs=62.9
Q ss_pred cceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccccccCCCCCccccccCcchhHHHHhCCCeEEEEeCc
Q 003088 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRRRPFTLLLLDEI 740 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~i~~~~~~vl~lDEi 740 (849)
.++|+||+|+|||+++++++..+...+...+.++..++... . .+. ...+|+|||+
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~--------------------~---~~~--~~~lLilDE~ 92 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT--------------------D---AAF--EAEYLAVDQV 92 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC--------------------G---GGG--GCSEEEEEST
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH--------------------H---HHh--CCCEEEEeCc
Confidence 49999999999999999999987544445666666554321 0 111 2369999999
Q ss_pred cccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCch
Q 003088 741 EKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGST 784 (849)
Q Consensus 741 d~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~ 784 (849)
+.+.+..+..|+++++... .....++|+|||..+.
T Consensus 93 ~~~~~~~~~~l~~li~~~~---------~~g~~~iiits~~~p~ 127 (149)
T 2kjq_A 93 EKLGNEEQALLFSIFNRFR---------NSGKGFLLLGSEYTPQ 127 (149)
T ss_dssp TCCCSHHHHHHHHHHHHHH---------HHTCCEEEEEESSCTT
T ss_pred cccChHHHHHHHHHHHHHH---------HcCCcEEEEECCCCHH
Confidence 9998877888988887511 0112347778887554
No 186
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.57 E-value=6.1e-08 Score=104.50 Aligned_cols=97 Identities=14% Similarity=0.244 Sum_probs=56.0
Q ss_pred hhcCCCCcccc----HHHHHHHHHHHhcC---CCCCCeEeCCCCChHHHHHHHHHHHhh-hCCCCccccCCeEEEeehhh
Q 003088 285 SEELIDPVIGR----ETEIQRIIQILCRR---TKNNPILLGESGVGKTAIAEGLAIRIV-QAEVPVFLLSKRIMSLDMGL 356 (849)
Q Consensus 285 ~~~~l~~iiG~----~~~i~~l~~~l~~~---~~~niLL~GppGtGKT~la~~la~~l~-~~~~p~~~~~~~~~~l~~~~ 356 (849)
++.+|+++++. ...+..+.+++... ...+++|+||||||||++|.+++..+. .. +..++.+++..
T Consensus 119 ~~~tfd~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~-------g~~v~~~~~~~ 191 (308)
T 2qgz_A 119 RHIHLSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKK-------GVSTTLLHFPS 191 (308)
T ss_dssp GSCCGGGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHS-------CCCEEEEEHHH
T ss_pred HhCCHhhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhc-------CCcEEEEEHHH
Confidence 33455555542 23444455555442 257899999999999999999999986 54 34555555544
Q ss_pred hhc---cccccchHHHHHHHHHHHHHhcCCeEEEEcCcchh
Q 003088 357 LMA---GAKERGELEARVTTLISEIQKSGDVILFIDEVHTL 394 (849)
Q Consensus 357 ~~~---~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l 394 (849)
+.. .....+. +..++..+... .+|||||++..
T Consensus 192 l~~~l~~~~~~~~----~~~~~~~~~~~--~lLiiDdig~~ 226 (308)
T 2qgz_A 192 FAIDVKNAISNGS----VKEEIDAVKNV--PVLILDDIGAE 226 (308)
T ss_dssp HHHHHHCCCC--------CCTTHHHHTS--SEEEEETCCC-
T ss_pred HHHHHHHHhccch----HHHHHHHhcCC--CEEEEcCCCCC
Confidence 332 1111111 12223333333 49999999765
No 187
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.55 E-value=3.3e-07 Score=100.35 Aligned_cols=166 Identities=14% Similarity=0.080 Sum_probs=112.7
Q ss_pred CCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhccccccchHHHHHHHHHHHHHh----cCCe
Q 003088 309 RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK----SGDV 384 (849)
Q Consensus 309 ~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~~~~~~g~~e~~l~~l~~~~~~----~~~~ 384 (849)
+-.+..||+||+|.||++.++.+++.+.+.+.. .+.++.++ +. .+ ++.+++.+.. ++..
T Consensus 16 ~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~------~~---~~----~~~l~~~~~~~plf~~~k 78 (343)
T 1jr3_D 16 GLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFE----EHHTFSID------PN---TD----WNAIFSLCQAMSLFASRQ 78 (343)
T ss_dssp CCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCC----EEEEEECC------TT---CC----HHHHHHHHHHHHHCCSCE
T ss_pred CCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCC----eeEEEEec------CC---CC----HHHHHHHhcCcCCccCCe
Confidence 444567999999999999999999988643211 11223322 11 12 3445544442 4568
Q ss_pred EEEEcCcch-hhhCCCCCCCCCCccHHHHHHHhhhhcC--CCeEEEEccCh-HHHHHHhhccHHHHhccccEEecCCCHH
Q 003088 385 ILFIDEVHT-LIGSGTVGRGNKGTGLDISNLLKPSLGR--GELQCIASTTQ-DEHRTQFEKDKALARRFQPVLISEPSQE 460 (849)
Q Consensus 385 ILfIDEi~~-l~~~~~~~~~~~~~~~~~~~~L~~~le~--~~i~vI~at~~-~~~~~~~~~d~al~~Rf~~i~~~~ps~~ 460 (849)
|++|||+|. + +.++++.|..++++ ...++|.+++. +.-.+...+-+++.+|++.+.+.+++.+
T Consensus 79 vvii~~~~~kl-------------~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~ 145 (343)
T 1jr3_D 79 TLLLLLPENGP-------------NAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQA 145 (343)
T ss_dssp EEEEECCSSCC-------------CTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTT
T ss_pred EEEEECCCCCC-------------ChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHH
Confidence 999999998 7 23467888888886 34555544443 2111122456889999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhcccccCcchhhHHHHHHHHh
Q 003088 461 DAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAG 514 (849)
Q Consensus 461 e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~~~~~r~~p~~ai~ll~~a~ 514 (849)
+....++..++ ..++.++++++..++..+.+-. ..+...++..+
T Consensus 146 ~l~~~l~~~~~----~~g~~i~~~a~~~l~~~~~gdl------~~~~~elekl~ 189 (343)
T 1jr3_D 146 QLPRWVAARAK----QLNLELDDAANQVLCYCYEGNL------LALAQALERLS 189 (343)
T ss_dssp HHHHHHHHHHH----HTTCEECHHHHHHHHHSSTTCH------HHHHHHHHHHH
T ss_pred HHHHHHHHHHH----HcCCCCCHHHHHHHHHHhchHH------HHHHHHHHHHH
Confidence 99988887776 6789999999999998887643 24555555544
No 188
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=98.47 E-value=1.5e-07 Score=89.28 Aligned_cols=62 Identities=21% Similarity=0.264 Sum_probs=57.8
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHhhhcCCchhhHHHHhhcCCHHHHHHHHHHhhh
Q 003088 171 FSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQ 234 (849)
Q Consensus 171 ~s~~~~~vl~~A~~~a~~~g~~~I~~ehlLlall~~~~~~a~~iL~~~gv~~~~l~~~~~~~~~ 234 (849)
||+.++++|+.|.++|+++||.+|++||||+||+.++ .+.++|+++|+|.+.++..+...+.
T Consensus 2 ~t~~~~~~l~~A~~~A~~~~~~~i~~eHlLlaLl~~~--~~~~iL~~~g~~~~~l~~~l~~~l~ 63 (143)
T 1k6k_A 2 LNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNP--SAREALEACSVDLVALRQELEAFIE 63 (143)
T ss_dssp BCHHHHHHHHHHHHHHHHHTBSEECHHHHHHHHTTCH--HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHcCc--hHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999765 3899999999999999998888774
No 189
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.46 E-value=1.1e-06 Score=113.29 Aligned_cols=84 Identities=15% Similarity=0.217 Sum_probs=51.7
Q ss_pred cceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccccccCCCC-------CccccccCcchhHHHHhCCCe
Q 003088 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPP-------GYVGYEEGGLLTEAIRRRPFT 733 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~-------g~vg~~~~~~l~~~i~~~~~~ 733 (849)
+++|+||||||||++|.+++......+.....++..+...... ..-+|.+- .+.++.-...+...++....+
T Consensus 1429 ~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~-a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr~~~~~ 1507 (2050)
T 3cmu_A 1429 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY-ARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVD 1507 (2050)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHH-HHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTCCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHH-HHHcCCCchhceeecCChHHHHHHHHHHHHhcCCCC
Confidence 4999999999999999999887766666777777765433222 11122110 011111111233344556778
Q ss_pred EEEEeCccccCH
Q 003088 734 LLLLDEIEKAHP 745 (849)
Q Consensus 734 vl~lDEid~l~~ 745 (849)
+|||||++.+-|
T Consensus 1508 lVVIDsi~al~p 1519 (2050)
T 3cmu_A 1508 VIVVDSVAALTP 1519 (2050)
T ss_dssp EEEESCGGGCCC
T ss_pred EEEEcChhHhcc
Confidence 999999985543
No 190
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.42 E-value=1.4e-07 Score=101.69 Aligned_cols=108 Identities=17% Similarity=0.221 Sum_probs=66.4
Q ss_pred ccceeecCCCCchHHHHHHHHHHhc-CCCCceeEeeccccccccccccccCCCCCccccccCcchhHHHHhCCCeEEEEe
Q 003088 660 AAMLFCGPTGVGKTELAKSLAACYF-GSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRRRPFTLLLLD 738 (849)
Q Consensus 660 ~~lL~~Gp~GtGKt~lA~~la~~l~-~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~i~~~~~~vl~lD 738 (849)
.+++|+||||||||++|+++++.+. ..+.+++.+.++++... +.+. + .......+...+... .+||||
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~-----l~~~---~-~~~~~~~~~~~~~~~--~lLiiD 221 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAID-----VKNA---I-SNGSVKEEIDAVKNV--PVLILD 221 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHH-----HHCC---C-C----CCTTHHHHTS--SEEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHH-----HHHH---h-ccchHHHHHHHhcCC--CEEEEc
Confidence 3599999999999999999999886 66677888887765432 1111 0 000011233444444 499999
Q ss_pred Ccccc--CHHHHHHHHH-HhhcCeeecCCCceeecCCeEEEEecCCCchhhhc
Q 003088 739 EIEKA--HPDIFNILLQ-VFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAK 788 (849)
Q Consensus 739 Eid~l--~~~~~~~Ll~-~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l~~ 788 (849)
|++.. ++..++.|+. +++... ..+..+|+|||..+..+..
T Consensus 222 dig~~~~~~~~~~~ll~~ll~~r~----------~~~~~~IitSN~~~~~l~~ 264 (308)
T 2qgz_A 222 DIGAEQATSWVRDEVLQVILQYRM----------LEELPTFFTSNYSFADLER 264 (308)
T ss_dssp TCCC------CTTTTHHHHHHHHH----------HHTCCEEEEESSCHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHH----------HCCCcEEEECCCCHHHHHH
Confidence 99654 4444443443 555311 1134699999998887754
No 191
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.42 E-value=2.1e-07 Score=89.07 Aligned_cols=106 Identities=14% Similarity=0.146 Sum_probs=65.3
Q ss_pred CCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEc
Q 003088 310 TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFID 389 (849)
Q Consensus 310 ~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~~~~~~g~~e~~l~~l~~~~~~~~~~ILfID 389 (849)
...+++|+||+|+|||+++++++..+... +.+++.++...+... .+ ...+.+|+||
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~-------g~~~~~~~~~~~~~~------------~~-----~~~~~lLilD 90 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEA-------GKNAAYIDAASMPLT------------DA-----AFEAEYLAVD 90 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTT-------TCCEEEEETTTSCCC------------GG-----GGGCSEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhc-------CCcEEEEcHHHhhHH------------HH-----HhCCCEEEEe
Confidence 55679999999999999999999988532 444555554443311 00 1235699999
Q ss_pred CcchhhhCCCCCCCCCCccHHHHHHHhhhhcCCCeEEEEccChHHHHHHhhccHHHHhccc
Q 003088 390 EVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQ 450 (849)
Q Consensus 390 Ei~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~~i~vI~at~~~~~~~~~~~d~al~~Rf~ 450 (849)
|++.+.+ .....+.+++....+++..++|.+++... ..+... +.|.+||.
T Consensus 91 E~~~~~~---------~~~~~l~~li~~~~~~g~~~iiits~~~p-~~l~~~-~~L~SRl~ 140 (149)
T 2kjq_A 91 QVEKLGN---------EEQALLFSIFNRFRNSGKGFLLLGSEYTP-QQLVIR-EDLRTRMA 140 (149)
T ss_dssp STTCCCS---------HHHHHHHHHHHHHHHHTCCEEEEEESSCT-TTSSCC-HHHHHHGG
T ss_pred CccccCh---------HHHHHHHHHHHHHHHcCCcEEEEECCCCH-HHcccc-HHHHHHHh
Confidence 9998721 11233455555555666553444555321 012233 89999996
No 192
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.27 E-value=1e-06 Score=87.63 Aligned_cols=120 Identities=12% Similarity=0.140 Sum_probs=70.2
Q ss_pred HHHHHHHHHhcC-CCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhccccccchHHHHHHHHHH
Q 003088 298 EIQRIIQILCRR-TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLIS 376 (849)
Q Consensus 298 ~i~~l~~~l~~~-~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~~~~~~g~~e~~l~~l~~ 376 (849)
-+..+..++..- +++++||+||||||||++|.++|+.+. + +++... ..+. .+ .+.
T Consensus 44 f~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~-g---------~i~~fa------ns~s--~f------~l~ 99 (212)
T 1tue_A 44 FLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQ-G---------AVISFV------NSTS--HF------WLE 99 (212)
T ss_dssp HHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHT-C---------EECCCC------CSSS--CG------GGG
T ss_pred HHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC-C---------CeeeEE------eccc--hh------hhc
Confidence 345555555442 345799999999999999999999873 2 111110 0000 00 011
Q ss_pred HHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCC---------------CeEEEEccChHHHHHHhhc
Q 003088 377 EIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG---------------ELQCIASTTQDEHRTQFEK 441 (849)
Q Consensus 377 ~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~---------------~i~vI~at~~~~~~~~~~~ 441 (849)
.+. +..|++|||++.-. ...+...++.+++.. ...+|.|||.+-.. ...
T Consensus 100 ~l~--~~kIiiLDEad~~~------------~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~--~~~ 163 (212)
T 1tue_A 100 PLT--DTKVAMLDDATTTC------------WTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAK--DNR 163 (212)
T ss_dssp GGT--TCSSEEEEEECHHH------------HHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTS--SSS
T ss_pred ccC--CCCEEEEECCCchh------------HHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCccc--ccc
Confidence 111 12489999997431 222334555565532 24678888864311 123
Q ss_pred cHHHHhccccEEecCC
Q 003088 442 DKALARRFQPVLISEP 457 (849)
Q Consensus 442 d~al~~Rf~~i~~~~p 457 (849)
-+.|.+|+..+.|+.|
T Consensus 164 ~~~L~SRi~~f~F~~~ 179 (212)
T 1tue_A 164 WPYLESRITVFEFPNA 179 (212)
T ss_dssp CHHHHTSCEEEECCSC
T ss_pred hhhhhhhEEEEEcCCC
Confidence 3789999998888855
No 193
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.22 E-value=1.7e-06 Score=90.04 Aligned_cols=133 Identities=13% Similarity=0.146 Sum_probs=75.8
Q ss_pred ccceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccccccCCCCCccccccCcchhHHHHhCCCeEEEEeC
Q 003088 660 AAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRRRPFTLLLLDE 739 (849)
Q Consensus 660 ~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~i~~~~~~vl~lDE 739 (849)
.+++|+||||||||++|++|++.+.- ...++.+ ..+ -. +.....+.|+++|
T Consensus 105 n~~~l~GppgtGKt~~a~ala~~~~l----~G~vn~~---~~~------------------f~----l~~~~~k~i~l~E 155 (267)
T 1u0j_A 105 NTIWLFGPATTGKTNIAEAIAHTVPF----YGCVNWT---NEN------------------FP----FNDCVDKMVIWWE 155 (267)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSSC----EEECCTT---CSS------------------CT----TGGGSSCSEEEEC
T ss_pred cEEEEECCCCCCHHHHHHHHHhhhcc----cceeecc---ccc------------------cc----cccccccEEEEec
Confidence 35999999999999999999986300 1111111 100 01 1111223444444
Q ss_pred ccccCHHHHHHHHHHhhcCeeecCC--CceeecCCeEEEEecCCCchhhhcccCCccccccccCCcccHHhHHHHHHHHH
Q 003088 740 IEKAHPDIFNILLQVFEDGHLTDSH--GRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEEL 817 (849)
Q Consensus 740 id~l~~~~~~~Ll~~le~g~~~~~~--g~~~~~~~~~iI~tsn~~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~l 817 (849)
-..+..++++.+..+++.+.+.... ........+.+|+|||.+.......+. .+ . +
T Consensus 156 e~~~~~d~~~~lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~~i~~~~~g~~------~s-~-~-------------- 213 (267)
T 1u0j_A 156 EGKMTAKVVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNS------TT-F-E-------------- 213 (267)
T ss_dssp SCCEETTTHHHHHHHHTTCCEEC------CCEECCCCEEEEESSCTTCEEETTE------EE-C-T--------------
T ss_pred cccchhHHHHHHHHHhCCCcEEEecCcCCcccccCCCEEEEecCCcccccccCc------cc-h-h--------------
Confidence 4445556777888888765554322 112244577899999986543211110 00 0 0
Q ss_pred HhhCChHHhhccccEEEcC--------CCCHHHHcccc
Q 003088 818 KAYFRPELLNRIDEVVVFR--------SLEKAQVCQLP 847 (849)
Q Consensus 818 ~~~~~pell~R~d~~i~f~--------pl~~~~~~~I~ 847 (849)
..+.|.+|+ .++.|. +++.+++...+
T Consensus 214 ---~~~~L~sR~-~~f~F~~~~p~~~~~lt~~~~~~f~ 247 (267)
T 1u0j_A 214 ---HQQPLQDRM-FKFELTRRLDHDFGKVTKQEVKDFF 247 (267)
T ss_dssp ---THHHHHTTE-EEEECCSCCCTTSCCCCHHHHHHHH
T ss_pred ---hhHHHhhhE-EEEECCCcCCcccCCCCHHHHHHHH
Confidence 346688888 788888 88888876543
No 194
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.19 E-value=1.4e-06 Score=87.37 Aligned_cols=131 Identities=14% Similarity=0.075 Sum_probs=68.0
Q ss_pred CeEeCCCCChHHHHHHHHHHHhhhCCCCccccC-CeEEEeehhhhhccc------c-----ccch--HHHHHHHHHHHHH
Q 003088 314 PILLGESGVGKTAIAEGLAIRIVQAEVPVFLLS-KRIMSLDMGLLMAGA------K-----ERGE--LEARVTTLISEIQ 379 (849)
Q Consensus 314 iLL~GppGtGKT~la~~la~~l~~~~~p~~~~~-~~~~~l~~~~~~~~~------~-----~~g~--~e~~l~~l~~~~~ 379 (849)
.+++|+||+|||++|..++.....-.. . ..+ .+++..++..+..+. + ..++ ....+.+++. ..
T Consensus 8 ~l~tG~pGsGKT~~a~~~~~~~~~~~~-~-~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~-~~ 84 (199)
T 2r2a_A 8 CLITGTPGSGKTLKMVSMMANDEMFKP-D-ENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIK-KP 84 (199)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCGGGSC-C-TTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTT-SG
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhhcc-c-ccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhh-cc
Confidence 489999999999999887655420000 0 012 333333332221100 0 0000 0011222211 13
Q ss_pred hcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCCCeEEEEccChHHHHHHhhccHHHHhccc-cEEecCC
Q 003088 380 KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQ-PVLISEP 457 (849)
Q Consensus 380 ~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~~i~vI~at~~~~~~~~~~~d~al~~Rf~-~i~~~~p 457 (849)
.+.++||||||+|.+++.+... .+ .......|.. -....+.+|.+|.... .++.+++.|+. .+.+..+
T Consensus 85 ~~~~~vliIDEAq~l~~~~~~~---~e-~~rll~~l~~-~r~~~~~iil~tq~~~-----~l~~~lr~ri~~~~~l~~~ 153 (199)
T 2r2a_A 85 ENIGSIVIVDEAQDVWPARSAG---SK-IPENVQWLNT-HRHQGIDIFVLTQGPK-----LLDQNLRTLVRKHYHIASN 153 (199)
T ss_dssp GGTTCEEEETTGGGTSBCCCTT---CC-CCHHHHGGGG-TTTTTCEEEEEESCGG-----GBCHHHHTTEEEEEEEEEC
T ss_pred ccCceEEEEEChhhhccCcccc---ch-hHHHHHHHHh-cCcCCeEEEEECCCHH-----HHhHHHHHHhheEEEEcCc
Confidence 4557899999999997654221 01 1122221211 1133467777777765 78899999997 5777665
No 195
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.14 E-value=5e-06 Score=86.50 Aligned_cols=128 Identities=16% Similarity=0.249 Sum_probs=76.7
Q ss_pred HHHHHHHHhcC-C-CCCCeEeCCCCChHHHHHHHHHHHhh-hCCCCccccCCeEEEeehhhhhccccccchHHHHHHHHH
Q 003088 299 IQRIIQILCRR-T-KNNPILLGESGVGKTAIAEGLAIRIV-QAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLI 375 (849)
Q Consensus 299 i~~l~~~l~~~-~-~~niLL~GppGtGKT~la~~la~~l~-~~~~p~~~~~~~~~~l~~~~~~~~~~~~g~~e~~l~~l~ 375 (849)
...+..++... . +++++|+||||||||.+|.+||+.+. .+.+ +.. .... .+
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~~l~G~v------------n~~----~~~f----------~l 143 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTVPFYGCV------------NWT----NENF----------PF 143 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHSSCEEEC------------CTT----CSSC----------TT
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhhccccee------------ecc----cccc----------cc
Confidence 44466677654 3 56799999999999999999998751 1111 100 0000 11
Q ss_pred HHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhc--------C-------CCeEEEEccChHHHH----
Q 003088 376 SEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG--------R-------GELQCIASTTQDEHR---- 436 (849)
Q Consensus 376 ~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le--------~-------~~i~vI~at~~~~~~---- 436 (849)
..+ ..+.|+++||.... .++.+.++.+++ + ....+|.+||.+-..
T Consensus 144 ~~~--~~k~i~l~Ee~~~~--------------~d~~~~lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~~i~~~~~g 207 (267)
T 1u0j_A 144 NDC--VDKMVIWWEEGKMT--------------AKVVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDG 207 (267)
T ss_dssp GGG--SSCSEEEECSCCEE--------------TTTHHHHHHHHTTCCEEC------CCEECCCCEEEEESSCTTCEEET
T ss_pred ccc--cccEEEEeccccch--------------hHHHHHHHHHhCCCcEEEecCcCCcccccCCCEEEEecCCccccccc
Confidence 111 12346667777655 123344555555 1 234677888873211
Q ss_pred --HHhhccHHHHhccccEEec--------CCCHHHHHHHHHH
Q 003088 437 --TQFEKDKALARRFQPVLIS--------EPSQEDAVRILLG 468 (849)
Q Consensus 437 --~~~~~d~al~~Rf~~i~~~--------~ps~~e~~~iL~~ 468 (849)
......++|++|+..+.|. +.+.++....+..
T Consensus 208 ~~~s~~~~~~L~sR~~~f~F~~~~p~~~~~lt~~~~~~f~~w 249 (267)
T 1u0j_A 208 NSTTFEHQQPLQDRMFKFELTRRLDHDFGKVTKQEVKDFFRW 249 (267)
T ss_dssp TEEECTTHHHHHTTEEEEECCSCCCTTSCCCCHHHHHHHHHH
T ss_pred CccchhhhHHHhhhEEEEECCCcCCcccCCCCHHHHHHHHHH
Confidence 0014457899999999998 6788888888763
No 196
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.13 E-value=2.5e-06 Score=84.83 Aligned_cols=97 Identities=18% Similarity=0.346 Sum_probs=55.5
Q ss_pred cceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccccccCCCCCccccccCcchhHHHHhCCCeEEEEeCc
Q 003088 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRRRPFTLLLLDEI 740 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~i~~~~~~vl~lDEi 740 (849)
+++|+||||||||++|.++++.+.+. .+.+..+. +.+ + +. .+ ....+++|||+
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~l~g~---i~~fans~-------s~f------~--------l~-~l--~~~kIiiLDEa 112 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHFIQGA---VISFVNST-------SHF------W--------LE-PL--TDTKVAMLDDA 112 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHHTCE---ECCCCCSS-------SCG------G--------GG-GG--TTCSSEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCC---eeeEEecc-------chh------h--------hc-cc--CCCCEEEEECC
Confidence 49999999999999999999997432 22111100 000 0 00 00 11349999999
Q ss_pred cccCHHH-HHHHHHHhhcCeeecCC--CceeecCCeEEEEecCCCch
Q 003088 741 EKAHPDI-FNILLQVFEDGHLTDSH--GRRVSFKNALIVMTSNVGST 784 (849)
Q Consensus 741 d~l~~~~-~~~Ll~~le~g~~~~~~--g~~~~~~~~~iI~tsn~~~~ 784 (849)
+...-+. ...+..+|+...+.... -..+.....-+|+|||....
T Consensus 113 d~~~~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~ 159 (212)
T 1tue_A 113 TTTCWTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPA 159 (212)
T ss_dssp CHHHHHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTT
T ss_pred CchhHHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcc
Confidence 8654333 34566777664333211 11122234579999998643
No 197
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.12 E-value=8.4e-06 Score=88.73 Aligned_cols=54 Identities=17% Similarity=0.275 Sum_probs=43.1
Q ss_pred ccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeecccc
Q 003088 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEY 698 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~ 698 (849)
..++|++..++.+...+.. | ..++++||+|+|||++++.+++.. + .+.+++...
T Consensus 12 ~~~~gR~~el~~L~~~l~~---~--------~~v~i~G~~G~GKT~Ll~~~~~~~---~--~~~~~~~~~ 65 (350)
T 2qen_A 12 EDIFDREEESRKLEESLEN---Y--------PLTLLLGIRRVGKSSLLRAFLNER---P--GILIDCREL 65 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHH---C--------SEEEEECCTTSSHHHHHHHHHHHS---S--EEEEEHHHH
T ss_pred HhcCChHHHHHHHHHHHhc---C--------CeEEEECCCcCCHHHHHHHHHHHc---C--cEEEEeecc
Confidence 4589999999999887764 1 249999999999999999999874 1 677777543
No 198
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.00 E-value=1e-05 Score=88.30 Aligned_cols=54 Identities=15% Similarity=0.265 Sum_probs=41.3
Q ss_pred ccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCCceeEeecccc
Q 003088 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEY 698 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~ 698 (849)
..++|.+..++.+.. +.. ..++++||+|+|||++++.+++... ..++.+++...
T Consensus 13 ~~~~gR~~el~~L~~-l~~------------~~v~i~G~~G~GKT~L~~~~~~~~~---~~~~~~~~~~~ 66 (357)
T 2fna_A 13 KDFFDREKEIEKLKG-LRA------------PITLVLGLRRTGKSSIIKIGINELN---LPYIYLDLRKF 66 (357)
T ss_dssp GGSCCCHHHHHHHHH-TCS------------SEEEEEESTTSSHHHHHHHHHHHHT---CCEEEEEGGGG
T ss_pred HHhcChHHHHHHHHH-hcC------------CcEEEECCCCCCHHHHHHHHHHhcC---CCEEEEEchhh
Confidence 458899888888766 431 1499999999999999999998862 24677777653
No 199
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.98 E-value=1.4e-05 Score=85.06 Aligned_cols=110 Identities=15% Similarity=0.219 Sum_probs=60.6
Q ss_pred CCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCc
Q 003088 312 NNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEV 391 (849)
Q Consensus 312 ~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi 391 (849)
..++|+||||+|||++|..++.. .... +.++.++....+. .+..+.+..+..+.+.+.+.+ +||||++
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~-~G~~-------VlyIs~~~eE~v~--~~~~~le~~l~~i~~~l~~~~--LLVIDsI 191 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA-LGGK-------DKYATVRFGEPLS--GYNTDFNVFVDDIARAMLQHR--VIVIDSL 191 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH-HHTT-------SCCEEEEBSCSST--TCBCCHHHHHHHHHHHHHHCS--EEEEECC
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh-CCCC-------EEEEEecchhhhh--hhhcCHHHHHHHHHHHHhhCC--EEEEecc
Confidence 45699999999999999999987 2221 1223331111111 112456666777777776654 9999999
Q ss_pred chhhhCCCCCCCCCCccHHH---HHHHhhhhcCCCeEEEEccChH
Q 003088 392 HTLIGSGTVGRGNKGTGLDI---SNLLKPSLGRGELQCIASTTQD 433 (849)
Q Consensus 392 ~~l~~~~~~~~~~~~~~~~~---~~~L~~~le~~~i~vI~at~~~ 433 (849)
+.+........+........ ...|..++.+.++.+|++++..
T Consensus 192 ~aL~~~~~~~s~~G~v~~~lrqlL~~L~~~~k~~gvtVIlttnp~ 236 (331)
T 2vhj_A 192 KNVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLNPT 236 (331)
T ss_dssp TTTC-----------CCHHHHHHHHHHHHHHHHHTCEEEEECCCS
T ss_pred cccccccccccccchHHHHHHHHHHHHHHHHhhCCCEEEEEeCCc
Confidence 99954321100000012222 3333344445567788887754
No 200
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.97 E-value=2.8e-05 Score=76.49 Aligned_cols=70 Identities=11% Similarity=0.166 Sum_probs=42.0
Q ss_pred hcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCCCeEEEEcc--ChHHHHHHhhccHHHHhc--cccEEec
Q 003088 380 KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIAST--TQDEHRTQFEKDKALARR--FQPVLIS 455 (849)
Q Consensus 380 ~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~~i~vI~at--~~~~~~~~~~~d~al~~R--f~~i~~~ 455 (849)
...+.+|++||++-+. ..+....+.+...+++....+|.++ +.+. ..-..+.+| ...+++.
T Consensus 97 ~~~p~llilDEigp~~----------~ld~~~~~~l~~~l~~~~~~~i~~~H~~h~~-----~~~~~i~~r~~~~i~~~~ 161 (178)
T 1ye8_A 97 KDRRKVIIIDEIGKME----------LFSKKFRDLVRQIMHDPNVNVVATIPIRDVH-----PLVKEIRRLPGAVLIELT 161 (178)
T ss_dssp HCTTCEEEECCCSTTG----------GGCHHHHHHHHHHHTCTTSEEEEECCSSCCS-----HHHHHHHTCTTCEEEECC
T ss_pred ccCCCEEEEeCCCCcc----------cCCHHHHHHHHHHHhcCCCeEEEEEccCCCc-----hHHHHHHhcCCcEEEEec
Confidence 4567899999987552 1234556777777776666455555 2221 223456676 4568877
Q ss_pred CCCHHHHHH
Q 003088 456 EPSQEDAVR 464 (849)
Q Consensus 456 ~ps~~e~~~ 464 (849)
..+.++...
T Consensus 162 ~~~r~~~~~ 170 (178)
T 1ye8_A 162 PENRDVILE 170 (178)
T ss_dssp TTTTTTHHH
T ss_pred CcCHHHHHH
Confidence 776544433
No 201
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.92 E-value=3.3e-05 Score=87.92 Aligned_cols=61 Identities=15% Similarity=0.332 Sum_probs=42.5
Q ss_pred hhhhHHHHhhcCCCCcc-ccHHHHHHHHHHHhcCCCCCCeEeCCCCChHHHHHHHHHHHhhhC
Q 003088 277 CVDLTARASEELIDPVI-GRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQA 338 (849)
Q Consensus 277 ~~~l~~~~~~~~l~~ii-G~~~~i~~l~~~l~~~~~~niLL~GppGtGKT~la~~la~~l~~~ 338 (849)
..+|.++++|..++.+- +|.+.+..+...+.... .+++|.|+||||||+++..++..+...
T Consensus 11 ~~~~~~~~~p~~~~~Ln~~Q~~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l~~~ 72 (459)
T 3upu_A 11 SSGLVPRGSHMTFDDLTEGQKNAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEALIST 72 (459)
T ss_dssp ----------CCSSCCCHHHHHHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred cCCCccccCCCccccCCHHHHHHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence 35788999999999886 77777777777766544 389999999999999999999998764
No 202
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.76 E-value=4.7e-05 Score=76.17 Aligned_cols=109 Identities=15% Similarity=0.028 Sum_probs=56.2
Q ss_pred cceeecCCCCchHHHHHHHHHHhc-----CCC-CceeEeeccccccccccccccCCCC---Ccccccc-CcchhHHH--H
Q 003088 661 AMLFCGPTGVGKTELAKSLAACYF-----GSE-SSMLRLDMSEYMERHTVSKLIGSPP---GYVGYEE-GGLLTEAI--R 728 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~l~-----~~~-~~~i~i~~~~~~~~~~~~~l~g~~~---g~vg~~~-~~~l~~~i--~ 728 (849)
-.||+|+||||||++|..+..... ..+ .++...++.++...+... ..... ...+... ...+.+.+ .
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~--~~~k~~~~~~~~~~~~~~~~~~~~~~~ 84 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYI--ETDAKKLPKSTDEQLSAHDMYEWIKKP 84 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEE--ECCTTTCSSCCSSCEEGGGHHHHTTSG
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCcccccccc--chhhhhccccCcccccHHHHHHHhhcc
Confidence 378999999999999988765532 233 455556655544322100 00000 0011100 11233332 2
Q ss_pred hCCCeEEEEeCcccc--CH-HHH--HHHHHHhhcCeeecCCCceeecCCeEEEEecCC
Q 003088 729 RRPFTLLLLDEIEKA--HP-DIF--NILLQVFEDGHLTDSHGRRVSFKNALIVMTSNV 781 (849)
Q Consensus 729 ~~~~~vl~lDEid~l--~~-~~~--~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~ 781 (849)
...++||+|||++.+ +. ... ..++..++..+ ....-||++++.
T Consensus 85 ~~~~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r----------~~~~~iil~tq~ 132 (199)
T 2r2a_A 85 ENIGSIVIVDEAQDVWPARSAGSKIPENVQWLNTHR----------HQGIDIFVLTQG 132 (199)
T ss_dssp GGTTCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTT----------TTTCEEEEEESC
T ss_pred ccCceEEEEEChhhhccCccccchhHHHHHHHHhcC----------cCCeEEEEECCC
Confidence 334789999999998 22 111 13555565422 123456777765
No 203
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.76 E-value=0.00013 Score=85.69 Aligned_cols=174 Identities=15% Similarity=0.124 Sum_probs=94.5
Q ss_pred hcCCCCccccHHHHHHHHHHHhc--CCCCCCeEeCCCCChHHHHHHHHHHHhh--hCCCCccccCCeEEEeeh---h---
Q 003088 286 EELIDPVIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIV--QAEVPVFLLSKRIMSLDM---G--- 355 (849)
Q Consensus 286 ~~~l~~iiG~~~~i~~l~~~l~~--~~~~niLL~GppGtGKT~la~~la~~l~--~~~~p~~~~~~~~~~l~~---~--- 355 (849)
|.....+|||+.++..+.+.+.. ....-++|+|++|+|||++|..+++... ....+. +.-.+.+.- .
T Consensus 120 P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~---~v~wv~~~~~~~~~~~ 196 (591)
T 1z6t_A 120 PQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPG---GVHWVSVGKQDKSGLL 196 (591)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTT---CEEEEEEESCCHHHHH
T ss_pred CCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCC---ceEEEECCCCchHHHH
Confidence 44456799999999999999864 2344579999999999999999875421 111110 111112110 0
Q ss_pred -hhh-----cc------ccccchHHHHHHHHHHHHHhc-CCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCC
Q 003088 356 -LLM-----AG------AKERGELEARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG 422 (849)
Q Consensus 356 -~~~-----~~------~~~~g~~e~~l~~l~~~~~~~-~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~ 422 (849)
.+. .+ .......+.....+...+... ++.+|+||+++... .+.. + ..
T Consensus 197 ~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~------------------~l~~-l-~~ 256 (591)
T 1z6t_A 197 MKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSW------------------VLKA-F-DS 256 (591)
T ss_dssp HHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHH------------------HHHT-T-CS
T ss_pred HHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHH------------------HHHH-h-cC
Confidence 010 00 001122333333333333332 57999999997541 1222 2 34
Q ss_pred CeEEEEccChHHHHHHhhccHHHHhccccEEe---cCCCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHhhhc
Q 003088 423 ELQCIASTTQDEHRTQFEKDKALARRFQPVLI---SEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495 (849)
Q Consensus 423 ~i~vI~at~~~~~~~~~~~d~al~~Rf~~i~~---~~ps~~e~~~iL~~~~~~~~~~~~~~i~~~~l~~~a~ls~~ 495 (849)
...+|.||....... .+ .-..+.+ .+++.++..+++..... . ...-.++....+++.+++
T Consensus 257 ~~~ilvTsR~~~~~~------~~--~~~~~~v~~l~~L~~~ea~~L~~~~~~----~-~~~~~~~~~~~i~~~~~G 319 (591)
T 1z6t_A 257 QCQILLTTRDKSVTD------SV--MGPKYVVPVESSLGKEKGLEILSLFVN----M-KKADLPEQAHSIIKECKG 319 (591)
T ss_dssp SCEEEEEESCGGGGT------TC--CSCEEEEECCSSCCHHHHHHHHHHHHT----S-CGGGSCTHHHHHHHHHTT
T ss_pred CCeEEEECCCcHHHH------hc--CCCceEeecCCCCCHHHHHHHHHHHhC----C-CcccccHHHHHHHHHhCC
Confidence 567777777653110 00 1123444 46799999999876543 1 111113445566666665
No 204
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.70 E-value=4.2e-05 Score=75.61 Aligned_cols=94 Identities=16% Similarity=0.193 Sum_probs=48.8
Q ss_pred ceeecCCCCchHHHHHHHHHHhcCCCCceeEeecccccccc---ccccccCCCCCccccccCcchhHHHHhCCCeEEEEe
Q 003088 662 MLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERH---TVSKLIGSPPGYVGYEEGGLLTEAIRRRPFTLLLLD 738 (849)
Q Consensus 662 lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~---~~~~l~g~~~g~vg~~~~~~l~~~i~~~~~~vl~lD 738 (849)
++++||+|+|||+++..++..+...+.+.+.+... ..... .+....|.............+.+.+. .+..+|+||
T Consensus 6 ~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~-~d~r~~~~~i~s~~g~~~~~~~~~~~~~~~~~~~-~~~dvviID 83 (184)
T 2orw_A 6 TVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPK-IDSRYHSTMIVSHSGNGVEAHVIERPEEMRKYIE-EDTRGVFID 83 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC------CCCEECC----CEECEEESSGGGGGGGCC-TTEEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeec-cccccCcccEEecCCCceeeEEECCHHHHHHHhc-CCCCEEEEE
Confidence 78999999999999866655443333343333221 11000 00000111000011111111222111 235799999
Q ss_pred CccccCHHHHHHHHHHhhc
Q 003088 739 EIEKAHPDIFNILLQVFED 757 (849)
Q Consensus 739 Eid~l~~~~~~~Ll~~le~ 757 (849)
|++.+++++++.|..+.+.
T Consensus 84 E~Q~~~~~~~~~l~~l~~~ 102 (184)
T 2orw_A 84 EVQFFNPSLFEVVKDLLDR 102 (184)
T ss_dssp CGGGSCTTHHHHHHHHHHT
T ss_pred CcccCCHHHHHHHHHHHHC
Confidence 9999988888888878776
No 205
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.62 E-value=5e-05 Score=82.87 Aligned_cols=121 Identities=18% Similarity=0.140 Sum_probs=77.7
Q ss_pred cceeecCCCCchHHHHHHHHHHhcCCC-Cce--eEeeccccccccccccccCCCCCccccccCcchhHHHHh----CCCe
Q 003088 661 AMLFCGPTGVGKTELAKSLAACYFGSE-SSM--LRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRR----RPFT 733 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~l~~~~-~~~--i~i~~~~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~i~~----~~~~ 733 (849)
.+||+||+|+||++.++.+++.+...+ .++ +.++. ......+.+.+.. .++.
T Consensus 20 ~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---------------------~~~~~~l~~~~~~~plf~~~k 78 (343)
T 1jr3_D 20 AYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDP---------------------NTDWNAIFSLCQAMSLFASRQ 78 (343)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCT---------------------TCCHHHHHHHHHHHHHCCSCE
T ss_pred EEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecC---------------------CCCHHHHHHHhcCcCCccCCe
Confidence 499999999999999999998764222 111 11110 0111122222222 3467
Q ss_pred EEEEeCccc-cCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCC-CchhhhcccCCccccccccCCcccHHhHHH
Q 003088 734 LLLLDEIEK-AHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNV-GSTTIAKGRHGSIGFLLEDNESTSYAGMKT 811 (849)
Q Consensus 734 vl~lDEid~-l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~-~~~~l~~~~~~~~gf~~~~~~~~~~~~~~~ 811 (849)
|++|||++. ++.+.++.|++.+++ +.++++||++++. +... +.
T Consensus 79 vvii~~~~~kl~~~~~~aLl~~le~-----------p~~~~~~il~~~~~~~~~--~~---------------------- 123 (343)
T 1jr3_D 79 TLLLLLPENGPNAAINEQLLTLTGL-----------LHDDLLLIVRGNKLSKAQ--EN---------------------- 123 (343)
T ss_dssp EEEEECCSSCCCTTHHHHHHHHHTT-----------CBTTEEEEEEESCCCTTT--TT----------------------
T ss_pred EEEEECCCCCCChHHHHHHHHHHhc-----------CCCCeEEEEEcCCCChhh--Hh----------------------
Confidence 999999999 999999999999997 3456777776653 2100 00
Q ss_pred HHHHHHHhhCChHHhhccccEEEcCCCCHHHHcc
Q 003088 812 LVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQ 845 (849)
Q Consensus 812 ~~~~~l~~~~~pell~R~d~~i~f~pl~~~~~~~ 845 (849)
+.+.+.+..|+ .++.|.|++.+++.+
T Consensus 124 -------~k~~~~i~sr~-~~~~~~~l~~~~l~~ 149 (343)
T 1jr3_D 124 -------AAWFTALANRS-VQVTCQTPEQAQLPR 149 (343)
T ss_dssp -------SHHHHHHTTTC-EEEEECCCCTTHHHH
T ss_pred -------hHHHHHHHhCc-eEEEeeCCCHHHHHH
Confidence 01446677777 678888888777653
No 206
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.52 E-value=0.00039 Score=80.94 Aligned_cols=149 Identities=15% Similarity=0.155 Sum_probs=82.9
Q ss_pred cccHHHHHHHHHHHhcC---CCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhh------------
Q 003088 293 IGRETEIQRIIQILCRR---TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLL------------ 357 (849)
Q Consensus 293 iG~~~~i~~l~~~l~~~---~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~------------ 357 (849)
+||+++++.+.+.|... ...-+.|+|+.|+|||++|+.+++... ..+.... +..++ ++++..
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~-~~~~~~F-~~~~w-v~vs~~~~~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSD-QLIGINY-DSIVW-LKDSGTAPKSTFDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCS-STBTTTB-SEEEE-EECCCCSTTHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhh-HHHhccC-CcEEE-EEECCCCCCCHHHHHHHH
Confidence 69999999999998654 334578999999999999999996210 0111111 22222 122210
Q ss_pred h---ccc----c----ccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCCCeEE
Q 003088 358 M---AGA----K----ERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQC 426 (849)
Q Consensus 358 ~---~~~----~----~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~~i~v 426 (849)
. ... . ..++.+.....+.+.+...++.+|+||+++... .. .+. ...+..|
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~--------------~~--~~~---~~~gs~i 268 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEE--------------TI--RWA---QELRLRC 268 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHH--------------HH--HHH---HHTTCEE
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCch--------------hh--ccc---ccCCCEE
Confidence 0 000 0 011122222223233332237999999998761 11 111 1255678
Q ss_pred EEccChHHHHHHhhccHHHHhccccEEecCCCHHHHHHHHHHH
Q 003088 427 IASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGL 469 (849)
Q Consensus 427 I~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~~e~~~iL~~~ 469 (849)
|.||....... ....--..+.+++++.++..+++...
T Consensus 269 lvTTR~~~v~~------~~~~~~~~~~l~~L~~~ea~~Lf~~~ 305 (549)
T 2a5y_B 269 LVTTRDVEISN------AASQTCEFIEVTSLEIDECYDFLEAY 305 (549)
T ss_dssp EEEESBGGGGG------GCCSCEEEEECCCCCHHHHHHHHHHT
T ss_pred EEEcCCHHHHH------HcCCCCeEEECCCCCHHHHHHHHHHH
Confidence 88877653111 00001135899999999999888654
No 207
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.50 E-value=2.3e-05 Score=77.52 Aligned_cols=118 Identities=19% Similarity=0.203 Sum_probs=58.3
Q ss_pred CeEeCCCCChHHHHHHHHHHHhhhCCCCcccc----CCe----EEEeehhhhhccccccchHHHHHHHHHHHHHhcCCeE
Q 003088 314 PILLGESGVGKTAIAEGLAIRIVQAEVPVFLL----SKR----IMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVI 385 (849)
Q Consensus 314 iLL~GppGtGKT~la~~la~~l~~~~~p~~~~----~~~----~~~l~~~~~~~~~~~~g~~e~~l~~l~~~~~~~~~~I 385 (849)
.+++||+|+||||++..++.++...+....+. +.+ .+....+.... ...... ...+++.+. .+..+
T Consensus 6 ~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d~r~~~~~i~s~~g~~~~-~~~~~~----~~~~~~~~~-~~~dv 79 (184)
T 2orw_A 6 TVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDSRYHSTMIVSHSGNGVE-AHVIER----PEEMRKYIE-EDTRG 79 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-----CCCEECC----CEE-CEEESS----GGGGGGGCC-TTEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeeccccccCcccEEecCCCcee-eEEECC----HHHHHHHhc-CCCCE
Confidence 58999999999999988877765432211000 000 00000000000 000001 112222222 23469
Q ss_pred EEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCCCeEEEEccChHHHH-HHhhccHHHHhcccc
Q 003088 386 LFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHR-TQFEKDKALARRFQP 451 (849)
Q Consensus 386 LfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~~i~vI~at~~~~~~-~~~~~d~al~~Rf~~ 451 (849)
|||||++.+ ..+..+.|..+.+.+ +.+|.++...+|+ +.+...+.|..+.+.
T Consensus 80 viIDE~Q~~-------------~~~~~~~l~~l~~~~-~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~ 132 (184)
T 2orw_A 80 VFIDEVQFF-------------NPSLFEVVKDLLDRG-IDVFCAGLDLTHKQNPFETTALLLSLADT 132 (184)
T ss_dssp EEECCGGGS-------------CTTHHHHHHHHHHTT-CEEEEEEESBCTTSCBCHHHHHHHHHCSE
T ss_pred EEEECcccC-------------CHHHHHHHHHHHHCC-CCEEEEeeccccccCCccchHHHHHHhhh
Confidence 999999998 223556666666654 4444443322222 345666777777653
No 208
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.46 E-value=0.0038 Score=72.62 Aligned_cols=51 Identities=10% Similarity=0.063 Sum_probs=37.7
Q ss_pred HHHHHHHHHHH-HHHHHcCCCcCCHHHHHHHhhhcCCchhhHHHHhhcCCHHHHHHHHHHhhh
Q 003088 173 ISTKRVFEAAV-EYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQ 234 (849)
Q Consensus 173 ~~~~~vl~~A~-~~a~~~g~~~I~~ehlLlall~~~~~~a~~iL~~~gv~~~~l~~~~~~~~~ 234 (849)
.+.+..+.+++ ..+...||.|+..+.|+-... ++ ++++.+.+.+.+...+.
T Consensus 72 ~R~~a~~~~~l~~~~~~~Ght~~~~~~l~~~~~--------~~---l~~~~~~~~~~~~~~~~ 123 (574)
T 3e1s_A 72 RRLTAAAVYALQLAGTQAGHSFLPRSRAEKGVV--------HY---TRVTPGQARLAVETAVE 123 (574)
T ss_dssp HHHHHHHHHHHHHHHHHTCCSCEEHHHHHHHHH--------HH---HCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCEeecHHHHHHHHH--------HH---hCCCHHHHHHHHHHHHh
Confidence 37888888998 788889999999998865443 23 36888877777665543
No 209
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.44 E-value=0.00015 Score=77.15 Aligned_cols=71 Identities=14% Similarity=0.202 Sum_probs=40.6
Q ss_pred ceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccccccCCCCCccccccCcchhHHHHhCCCeEEEEeCcc
Q 003088 662 MLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRRRPFTLLLLDEIE 741 (849)
Q Consensus 662 lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~i~~~~~~vl~lDEid 741 (849)
++|+||||||||++|..++.. .+....|+.+...+..+. +-. . .......+.+.+.+.. +||||+++
T Consensus 126 iLI~GpPGsGKTtLAlqlA~~-~G~~VlyIs~~~eE~v~~-----~~~----~-le~~l~~i~~~l~~~~--LLVIDsI~ 192 (331)
T 2vhj_A 126 VIVTGKGNSGKTPLVHALGEA-LGGKDKYATVRFGEPLSG-----YNT----D-FNVFVDDIARAMLQHR--VIVIDSLK 192 (331)
T ss_dssp EEEECSCSSSHHHHHHHHHHH-HHTTSCCEEEEBSCSSTT-----CBC----C-HHHHHHHHHHHHHHCS--EEEEECCT
T ss_pred EEEEcCCCCCHHHHHHHHHHh-CCCCEEEEEecchhhhhh-----hhc----C-HHHHHHHHHHHHhhCC--EEEEeccc
Confidence 799999999999999999976 233333555422332110 000 0 0000011334455544 99999999
Q ss_pred ccCH
Q 003088 742 KAHP 745 (849)
Q Consensus 742 ~l~~ 745 (849)
.+.+
T Consensus 193 aL~~ 196 (331)
T 2vhj_A 193 NVIG 196 (331)
T ss_dssp TTC-
T ss_pred cccc
Confidence 8854
No 210
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.42 E-value=0.00016 Score=92.64 Aligned_cols=83 Identities=12% Similarity=0.098 Sum_probs=56.1
Q ss_pred CCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhc---c---ccccch----HHHHHHHHHHHHHhc
Q 003088 312 NNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA---G---AKERGE----LEARVTTLISEIQKS 381 (849)
Q Consensus 312 ~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~---~---~~~~g~----~e~~l~~l~~~~~~~ 381 (849)
+.++|+||||||||++|.+++.+....+-|..+...+-. +..+.. | .++.++ .|..++.++..++..
T Consensus 1083 ~~~l~~G~~g~GKT~la~~~~~~~~~~g~~~~fi~~~~~---~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~ 1159 (1706)
T 3cmw_A 1083 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA---LDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSG 1159 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSC---CCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCChHHHHHHHHHHhhhcCCceeEEEcccc---hHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhc
Confidence 348999999999999999999877554333221111000 011110 0 233344 788888888888888
Q ss_pred CCeEEEEcCcchhhhC
Q 003088 382 GDVILFIDEVHTLIGS 397 (849)
Q Consensus 382 ~~~ILfIDEi~~l~~~ 397 (849)
.++++|+|+++.|++.
T Consensus 1160 ~~~~i~~d~~~al~~~ 1175 (1706)
T 3cmw_A 1160 AVDVIVVDSVAALTPK 1175 (1706)
T ss_dssp CCSEEEESCGGGCCCH
T ss_pred CCeEEEeCchHhcCcc
Confidence 8999999999999876
No 211
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.34 E-value=0.00057 Score=87.29 Aligned_cols=154 Identities=15% Similarity=0.153 Sum_probs=87.6
Q ss_pred hhcCCCCccccHHHHHHHHHHHhcC--CCCCCeEeCCCCChHHHHHHHHHHHhh--hCCCCccccCCeEEEeehhh----
Q 003088 285 SEELIDPVIGRETEIQRIIQILCRR--TKNNPILLGESGVGKTAIAEGLAIRIV--QAEVPVFLLSKRIMSLDMGL---- 356 (849)
Q Consensus 285 ~~~~l~~iiG~~~~i~~l~~~l~~~--~~~niLL~GppGtGKT~la~~la~~l~--~~~~p~~~~~~~~~~l~~~~---- 356 (849)
-|.....++||++++++|.+.|... ...-+.|+|+.|+|||+||..+++... ....+ ..++.++++.
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~ 193 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFS-----GGVHWVSIGKQDKS 193 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTST-----TCEEEEECCSCCHH
T ss_pred CCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCC-----CeEEEEEECCcCch
Confidence 3445567999999999999998542 334468999999999999998876531 11111 1222222211
Q ss_pred --------h---hccc-----cccchHHHHHHHHHHHHHhc--CCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhh
Q 003088 357 --------L---MAGA-----KERGELEARVTTLISEIQKS--GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPS 418 (849)
Q Consensus 357 --------~---~~~~-----~~~g~~e~~l~~l~~~~~~~--~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~ 418 (849)
+ +... ......+. +...+...-.. ++.+|+||+++... .+..+
T Consensus 194 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~l~~~l~~~~~~~LlvlDd~~~~~------------------~~~~~ 254 (1249)
T 3sfz_A 194 GLLMKLQNLCMRLDQEESFSQRLPLNIEE-AKDRLRVLMLRKHPRSLLILDDVWDPW------------------VLKAF 254 (1249)
T ss_dssp HHHHHHHHHHHHHTTTCTTCSSCCSSHHH-HHHHHHHHTSSSSCSCEEEEESCCCHH------------------HHTTT
T ss_pred HHHHHHHHHHHHhhhhcccccCCCCCHHH-HHHHHHHHHhccCCCEEEEEecCCCHH------------------HHHhh
Confidence 0 0000 00111222 22222222223 37899999998651 22222
Q ss_pred hcCCCeEEEEccChHHHHHHhhccHHHHhccccEEecC-CCHHHHHHHHHHHH
Q 003088 419 LGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISE-PSQEDAVRILLGLR 470 (849)
Q Consensus 419 le~~~i~vI~at~~~~~~~~~~~d~al~~Rf~~i~~~~-ps~~e~~~iL~~~~ 470 (849)
.....+|.||...... ..+...-..+.+++ ++.++..+++....
T Consensus 255 --~~~~~ilvTtR~~~~~------~~~~~~~~~~~~~~~l~~~~a~~l~~~~~ 299 (1249)
T 3sfz_A 255 --DNQCQILLTTRDKSVT------DSVMGPKHVVPVESGLGREKGLEILSLFV 299 (1249)
T ss_dssp --CSSCEEEEEESSTTTT------TTCCSCBCCEECCSSCCHHHHHHHHHHHH
T ss_pred --cCCCEEEEEcCCHHHH------HhhcCCceEEEecCCCCHHHHHHHHHHhh
Confidence 3456788887765310 00111223588886 89999999987654
No 212
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.33 E-value=0.0017 Score=65.58 Aligned_cols=30 Identities=27% Similarity=0.204 Sum_probs=26.3
Q ss_pred CCCCCCeEeCCCCChHHHHHHHHHHHhhhC
Q 003088 309 RTKNNPILLGESGVGKTAIAEGLAIRIVQA 338 (849)
Q Consensus 309 ~~~~niLL~GppGtGKT~la~~la~~l~~~ 338 (849)
+.+.++++.|+|||||||++-.+|..+...
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la~~l~~~ 33 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAAHAQLRQ 33 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 455689999999999999999999998765
No 213
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.31 E-value=0.00062 Score=88.36 Aligned_cols=82 Identities=15% Similarity=0.129 Sum_probs=53.8
Q ss_pred cCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhh----hhc---c-------ccccchHHHHHHH
Q 003088 308 RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGL----LMA---G-------AKERGELEARVTT 373 (849)
Q Consensus 308 ~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~----~~~---~-------~~~~g~~e~~l~~ 373 (849)
-.+..+++|+||||||||++|.+++.+.... +.++..++... +.+ | -......|+.+..
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~ea~~~-------G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~ 1496 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-------GKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEI 1496 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTT-------TCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHc-------CCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHH
Confidence 3466789999999999999999999887543 22233333221 110 0 0011234555666
Q ss_pred HHHHHHhcCCeEEEEcCcchhhh
Q 003088 374 LISEIQKSGDVILFIDEVHTLIG 396 (849)
Q Consensus 374 l~~~~~~~~~~ILfIDEi~~l~~ 396 (849)
+...++...+.+|||||++.+++
T Consensus 1497 ~~~lvr~~~~~lVVIDsi~al~p 1519 (2050)
T 3cmu_A 1497 CDALARSGAVDVIVVDSVAALTP 1519 (2050)
T ss_dssp HHHHHHHTCCSEEEESCGGGCCC
T ss_pred HHHHHhcCCCCEEEEcChhHhcc
Confidence 66667778889999999998876
No 214
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.30 E-value=0.00027 Score=71.81 Aligned_cols=117 Identities=22% Similarity=0.202 Sum_probs=60.7
Q ss_pred CCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCC------------------------eEEEeehhhhhcccc---
Q 003088 310 TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSK------------------------RIMSLDMGLLMAGAK--- 362 (849)
Q Consensus 310 ~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~------------------------~~~~l~~~~~~~~~~--- 362 (849)
....++|+||+|+|||++++.++..+.....+..+.+. .+..++......+..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEKKLIIIDALMKEKEDQWSL 101 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTTTEEEEECCC----CTTBC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhCCEEEEeccccccCceeee
Confidence 34567999999999999999999776432111110000 000000000000000
Q ss_pred ccchHHHHHHHHHHHHHhcCCe--EEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCCCeEEEEccCh
Q 003088 363 ERGELEARVTTLISEIQKSGDV--ILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQ 432 (849)
Q Consensus 363 ~~g~~e~~l~~l~~~~~~~~~~--ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~~i~vI~at~~ 432 (849)
......+....+...+...++. +|+|||+..+.... . .....+.+.|+.+..+.++.+|.++-.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d-~-----~~~~~~~~~l~~~~~~~~~~vi~~~h~ 167 (235)
T 2w0m_A 102 VNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDK-P-----AMARKISYYLKRVLNKWNFTIYATSQY 167 (235)
T ss_dssp SSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSC-G-----GGHHHHHHHHHHHHHHTTEEEEEEEC-
T ss_pred cCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCC-H-----HHHHHHHHHHHHHHHhCCCeEEEEecc
Confidence 0012334444444444455667 99999999885321 1 123556677776665555666665544
No 215
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.30 E-value=0.00085 Score=68.14 Aligned_cols=96 Identities=17% Similarity=0.085 Sum_probs=54.8
Q ss_pred cceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccc--cccccccccCCCCCccccccCcchhHHHHh----CCCeE
Q 003088 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYM--ERHTVSKLIGSPPGYVGYEEGGLLTEAIRR----RPFTL 734 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~--~~~~~~~l~g~~~g~vg~~~~~~l~~~i~~----~~~~v 734 (849)
-++++||+|+|||+++..++..+.+.+...+.+....-. .....++ +|-............+.+.+.+ ....+
T Consensus 14 i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~~dv 92 (223)
T 2b8t_A 14 IEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDETKV 92 (223)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTTCCE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCCCCE
Confidence 378899999999999988887765555555555332211 1111111 2211111111112234444444 23579
Q ss_pred EEEeCccccCHHHHHHHHHHhhc
Q 003088 735 LLLDEIEKAHPDIFNILLQVFED 757 (849)
Q Consensus 735 l~lDEid~l~~~~~~~Ll~~le~ 757 (849)
|+|||+..++.++...+..+.+.
T Consensus 93 ViIDEaQ~l~~~~ve~l~~L~~~ 115 (223)
T 2b8t_A 93 IGIDEVQFFDDRICEVANILAEN 115 (223)
T ss_dssp EEECSGGGSCTHHHHHHHHHHHT
T ss_pred EEEecCccCcHHHHHHHHHHHhC
Confidence 99999999998877766554443
No 216
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.29 E-value=0.00047 Score=69.72 Aligned_cols=108 Identities=19% Similarity=0.182 Sum_probs=60.6
Q ss_pred ccceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccccccC---CCCCcccc---ccC-cchhHHHHhCCC
Q 003088 660 AAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIG---SPPGYVGY---EEG-GLLTEAIRRRPF 732 (849)
Q Consensus 660 ~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g---~~~g~vg~---~~~-~~l~~~i~~~~~ 732 (849)
.+++|.|++|||||++|-.+|..+...+...+.++............+-| .+...+.+ ... ..+..++... +
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~al~~gl~~~~~~~~~~~~~~~~e~~l~~~L~~~-p 85 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETEALLNGLPQQPLLRTEYRGMTLEEMDLDALLKAA-P 85 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHHHHHTTSCBCCCEEEEETTEEEEECCHHHHHHHC-C
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHHHHhcCccccCcceeecCCcccccccHHHHHhcC-C
Confidence 46999999999999999999988755555666566543221111111111 11111111 111 2344445443 5
Q ss_pred eEEEEeCccccCH------HHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCC
Q 003088 733 TLLLLDEIEKAHP------DIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVG 782 (849)
Q Consensus 733 ~vl~lDEid~l~~------~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~ 782 (849)
.++++||+-..+. ..+.-+...++.| +=++.|+|..
T Consensus 86 dlvIVDElG~~~~~~~r~~~~~qDV~~~l~sg--------------idVitT~Nlq 127 (228)
T 2r8r_A 86 SLVLVDELAHTNAPGSRHTKRWQDIQELLAAG--------------IDVYTTVNVQ 127 (228)
T ss_dssp SEEEESCTTCBCCTTCSSSBHHHHHHHHHHTT--------------CEEEEEEEGG
T ss_pred CEEEEeCCCCCCcccchhHHHHHHHHHHHcCC--------------CCEEEEcccc
Confidence 7999999986532 1333334455543 3477888864
No 217
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=97.26 E-value=0.0017 Score=78.91 Aligned_cols=43 Identities=26% Similarity=0.325 Sum_probs=36.6
Q ss_pred ccccHHHHHHHHHHHhc-CCCCCCeEeCCCCChHHHHHHHHHHH
Q 003088 292 VIGRETEIQRIIQILCR-RTKNNPILLGESGVGKTAIAEGLAIR 334 (849)
Q Consensus 292 iiG~~~~i~~l~~~l~~-~~~~niLL~GppGtGKT~la~~la~~ 334 (849)
.|||+.+++.|.+.+.. ....-+.|+|+.|+|||++|+.+++.
T Consensus 130 ~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHh
Confidence 49999999999998875 33456789999999999999999863
No 218
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.23 E-value=0.00043 Score=70.34 Aligned_cols=26 Identities=27% Similarity=0.087 Sum_probs=22.5
Q ss_pred CCeEeCCCCChHHHHHHHHHHHhhhC
Q 003088 313 NPILLGESGVGKTAIAEGLAIRIVQA 338 (849)
Q Consensus 313 niLL~GppGtGKT~la~~la~~l~~~ 338 (849)
-++++||+|+||||++..++.++...
T Consensus 14 i~litG~mGsGKTT~ll~~~~r~~~~ 39 (223)
T 2b8t_A 14 IEFITGPMFAGKTAELIRRLHRLEYA 39 (223)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 45889999999999999999988654
No 219
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.23 E-value=0.00075 Score=66.16 Aligned_cols=22 Identities=36% Similarity=0.641 Sum_probs=20.8
Q ss_pred ceeecCCCCchHHHHHHHHHHh
Q 003088 662 MLFCGPTGVGKTELAKSLAACY 683 (849)
Q Consensus 662 lL~~Gp~GtGKt~lA~~la~~l 683 (849)
+.|.||+|+|||++.+.|+..+
T Consensus 3 i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 3 IIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999886
No 220
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.10 E-value=0.00088 Score=76.06 Aligned_cols=113 Identities=21% Similarity=0.331 Sum_probs=63.3
Q ss_pred ccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHHHhcCCCC-ceeEeecccccc----------c
Q 003088 633 GQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSES-SMLRLDMSEYME----------R 701 (849)
Q Consensus 633 Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~-~~i~i~~~~~~~----------~ 701 (849)
+|..++..+...+... . +++++.|++|||||+++.+++..+...+. .++.+..+.-.. .
T Consensus 29 ~Q~~av~~~~~~i~~~-------~---~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~~~~~~ 98 (459)
T 3upu_A 29 GQKNAFNIVMKAIKEK-------K---HHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKLSGKEA 98 (459)
T ss_dssp HHHHHHHHHHHHHHSS-------S---CEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHHHSSCE
T ss_pred HHHHHHHHHHHHHhcC-------C---CEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHhhhccch
Confidence 5666666665555431 1 24999999999999999999988754443 333332221110 0
Q ss_pred cccccccCCCCCccccccCcchh--HHHHhCCCeEEEEeCccccCHHHHHHHHHHhhc
Q 003088 702 HTVSKLIGSPPGYVGYEEGGLLT--EAIRRRPFTLLLLDEIEKAHPDIFNILLQVFED 757 (849)
Q Consensus 702 ~~~~~l~g~~~g~vg~~~~~~l~--~~i~~~~~~vl~lDEid~l~~~~~~~Ll~~le~ 757 (849)
.+...+++..+...+ ....+. .........+|++||+..+++..+..|+..+..
T Consensus 99 ~T~h~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~iiiDE~~~~~~~~~~~l~~~~~~ 154 (459)
T 3upu_A 99 STIHSILKINPVTYE--ENVLFEQKEVPDLAKCRVLICDEVSMYDRKLFKILLSTIPP 154 (459)
T ss_dssp EEHHHHHTEEEEECS--SCEEEEECSCCCCSSCSEEEESCGGGCCHHHHHHHHHHSCT
T ss_pred hhHHHHhccCccccc--ccchhcccccccccCCCEEEEECchhCCHHHHHHHHHhccC
Confidence 011112221100000 000000 000112357999999999999999999999874
No 221
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.98 E-value=0.0014 Score=63.75 Aligned_cols=24 Identities=33% Similarity=0.364 Sum_probs=22.2
Q ss_pred CCCeEeCCCCChHHHHHHHHHHHh
Q 003088 312 NNPILLGESGVGKTAIAEGLAIRI 335 (849)
Q Consensus 312 ~niLL~GppGtGKT~la~~la~~l 335 (849)
..++|+|+||+||||+++.|++.+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 357999999999999999999988
No 222
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.97 E-value=0.00072 Score=68.14 Aligned_cols=23 Identities=22% Similarity=0.200 Sum_probs=20.6
Q ss_pred CCCCeEeCCCCChHHHHHHHHHH
Q 003088 311 KNNPILLGESGVGKTAIAEGLAI 333 (849)
Q Consensus 311 ~~niLL~GppGtGKT~la~~la~ 333 (849)
..-++|+||||+|||+++..++.
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34579999999999999999998
No 223
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.94 E-value=0.022 Score=63.61 Aligned_cols=77 Identities=14% Similarity=0.140 Sum_probs=48.5
Q ss_pred CCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhh------------------ccccccchHHHHHH
Q 003088 311 KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM------------------AGAKERGELEARVT 372 (849)
Q Consensus 311 ~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~------------------~~~~~~g~~e~~l~ 372 (849)
+.-++++|++|+||||++..||..+... +.++.-+++.... .......+....+.
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~-------G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~ 172 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKR-------GYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAK 172 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTT-------TCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHC-------CCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHH
Confidence 3456899999999999999999988654 3333333321110 00011123444556
Q ss_pred HHHHHHHhcCCeEEEEcCcchh
Q 003088 373 TLISEIQKSGDVILFIDEVHTL 394 (849)
Q Consensus 373 ~l~~~~~~~~~~ILfIDEi~~l 394 (849)
..++.++..+..+++||....+
T Consensus 173 ~al~~a~~~~~DvVIIDTaGrl 194 (443)
T 3dm5_A 173 EGVDYFKSKGVDIIIVDTAGRH 194 (443)
T ss_dssp HHHHHHHHTTCSEEEEECCCCS
T ss_pred HHHHHHHhCCCCEEEEECCCcc
Confidence 6677777655679999988665
No 224
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.89 E-value=0.0057 Score=70.14 Aligned_cols=141 Identities=16% Similarity=0.283 Sum_probs=85.5
Q ss_pred CCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhh--hh--cccc--------c-----------cchH
Q 003088 311 KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGL--LM--AGAK--------E-----------RGEL 367 (849)
Q Consensus 311 ~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~--~~--~~~~--------~-----------~g~~ 367 (849)
.+|+|+.|.+|+|||++++.|...+.....|. .++++.+|... +. .+-. + ..++
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~---ev~lilIDpKg~eLs~~~~lPHl~~~Vvtd~~~a~~~L~~lv~EM 290 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILFKSTPS---EARLIMIDPKMLELSIYEGIPHLLCPVVTDMKEAANALRWSVAEM 290 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHTTCCTT---TEEEEEECSSSHHHHTTTTCTTBSSSCBCCHHHHHHHHHHHHHHH
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHHhCCCc---ceEEEEeCCChhhhHhhcCCCcccceeeCCHHHHHHHHHHHHHHH
Confidence 58999999999999999999888876544443 45666666432 10 0000 0 0122
Q ss_pred HHHHHHHHH-----------HHH---------------------------hcCCeEEEEcCcchhhhCCCCCCCCCCccH
Q 003088 368 EARVTTLIS-----------EIQ---------------------------KSGDVILFIDEVHTLIGSGTVGRGNKGTGL 409 (849)
Q Consensus 368 e~~l~~l~~-----------~~~---------------------------~~~~~ILfIDEi~~l~~~~~~~~~~~~~~~ 409 (849)
+.+.+.+-. .+. .....+|+|||++.++... ..
T Consensus 291 erR~~ll~~~gvrni~~Yn~~~~~~~~~G~~~~dp~~~~~~~~~~~~~~~~lP~ivvVIDE~~~L~~~~---------~~ 361 (574)
T 2iut_A 291 ERRYRLMAAMGVRNLAGFNRKVKDAEEAGTPLTDPLFRRESPDDEPPQLSTLPTIVVVVDEFADMMMIV---------GK 361 (574)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHTTCCCBCTTCCCCSTTCCCCBCCCCCEEEEEESCCTTHHHHT---------CH
T ss_pred HHHHHHHHHcCCccHHHHHHHHHHHhhcccccccccccccccccccccccCCCcEEEEEeCHHHHhhhh---------hH
Confidence 222221110 000 0113699999999887531 23
Q ss_pred HHHHHHhhhhcC---CCeEEEEccChHHHHHHhhccHHHHhccc-cEEecCCCHHHHHHHH
Q 003088 410 DISNLLKPSLGR---GELQCIASTTQDEHRTQFEKDKALARRFQ-PVLISEPSQEDAVRIL 466 (849)
Q Consensus 410 ~~~~~L~~~le~---~~i~vI~at~~~~~~~~~~~d~al~~Rf~-~i~~~~ps~~e~~~iL 466 (849)
++...|..+... -.+.+|.+|.... .-.++..++.-|. +|.+...+..+...||
T Consensus 362 ~~~~~L~~Iar~GRa~GIhLIlaTQRPs---~d~I~~~Iran~~~RI~lrv~s~~Dsr~IL 419 (574)
T 2iut_A 362 KVEELIARIAQKARAAGIHLILATQRPS---VDVITGLIKANIPTRIAFQVSSKIDSRTIL 419 (574)
T ss_dssp HHHHHHHHHHHHCTTTTEEEEEEESCCC---TTTSCHHHHHTCCEEEEECCSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCeEEEEEecCcc---cccccHHHHhhhccEEEEEcCCHHHHHHhc
Confidence 445555555543 3577777776543 1146778888886 6899888888887776
No 225
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.85 E-value=0.0016 Score=66.79 Aligned_cols=28 Identities=25% Similarity=0.386 Sum_probs=23.0
Q ss_pred CCCCCeEeCCCCChHHHHHHHHHHHhhh
Q 003088 310 TKNNPILLGESGVGKTAIAEGLAIRIVQ 337 (849)
Q Consensus 310 ~~~niLL~GppGtGKT~la~~la~~l~~ 337 (849)
....++|+||||+|||+++..++..+..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~ 49 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLK 49 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3456799999999999999988876644
No 226
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.80 E-value=0.0022 Score=63.43 Aligned_cols=94 Identities=16% Similarity=0.189 Sum_probs=51.0
Q ss_pred ceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccc---cccccccccccCCCCCccccccCcchhHHHHhCCCeEEEEe
Q 003088 662 MLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSE---YMERHTVSKLIGSPPGYVGYEEGGLLTEAIRRRPFTLLLLD 738 (849)
Q Consensus 662 lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~---~~~~~~~~~l~g~~~g~vg~~~~~~l~~~i~~~~~~vl~lD 738 (849)
.+++||.|+|||+.+-.++..+...+.....+.... +......+.+ |-.....+......+.+.+. .+..+|+||
T Consensus 11 ~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s~~-g~~~~a~~~~~~~~i~~~~~-~~~dvViID 88 (191)
T 1xx6_A 11 EVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHM-GEKEQAVAIKNSREILKYFE-EDTEVIAID 88 (191)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEECTT-SCEEECEEESSSTHHHHHCC-TTCSEEEEC
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHhhc-CCceeeEeeCCHHHHHHHHh-ccCCEEEEE
Confidence 778999999999988777776644455555554221 1111111111 21000011111112222222 235799999
Q ss_pred CccccCHHHHHHHHHHhhc
Q 003088 739 EIEKAHPDIFNILLQVFED 757 (849)
Q Consensus 739 Eid~l~~~~~~~Ll~~le~ 757 (849)
|+..++++..+.|..+.+.
T Consensus 89 Eaqfl~~~~v~~l~~l~~~ 107 (191)
T 1xx6_A 89 EVQFFDDEIVEIVNKIAES 107 (191)
T ss_dssp SGGGSCTHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHhC
Confidence 9999998887766655554
No 227
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.78 E-value=0.0028 Score=64.79 Aligned_cols=26 Identities=35% Similarity=0.414 Sum_probs=22.3
Q ss_pred CCCCCeEeCCCCChHHHHHHHHHHHh
Q 003088 310 TKNNPILLGESGVGKTAIAEGLAIRI 335 (849)
Q Consensus 310 ~~~niLL~GppGtGKT~la~~la~~l 335 (849)
...-++|+||||+|||+++..++...
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~ 48 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTC 48 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 34567999999999999999999864
No 228
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.77 E-value=0.0054 Score=60.53 Aligned_cols=31 Identities=32% Similarity=0.322 Sum_probs=27.1
Q ss_pred CCCCCeEeCCCCChHHHHHHHHHHHhhhCCC
Q 003088 310 TKNNPILLGESGVGKTAIAEGLAIRIVQAEV 340 (849)
Q Consensus 310 ~~~niLL~GppGtGKT~la~~la~~l~~~~~ 340 (849)
.+.++++++++|.||||+|-++|.+....+.
T Consensus 27 ~~g~i~v~tG~GkGKTTaA~GlalRA~g~G~ 57 (196)
T 1g5t_A 27 ERGIIIVFTGNGKGKTTAAFGTAARAVGHGK 57 (196)
T ss_dssp CCCCEEEEESSSSCHHHHHHHHHHHHHHTTC
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHHCCC
Confidence 5679999999999999999999999876543
No 229
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.69 E-value=0.0021 Score=74.82 Aligned_cols=91 Identities=22% Similarity=0.346 Sum_probs=55.0
Q ss_pred cceeecCCCCchHHHHHHHHHHhcCCCCceeEeecccccc----------ccccccccCCCCCccccccCcchhHHHHhC
Q 003088 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYME----------RHTVSKLIGSPPGYVGYEEGGLLTEAIRRR 730 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~----------~~~~~~l~g~~~g~vg~~~~~~l~~~i~~~ 730 (849)
.+++.|+||||||+++..+...+...+.+++.+..+.-.. ..++..+++..+. ++... .....
T Consensus 206 ~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~~--~~~~~-----~~~~~ 278 (574)
T 3e1s_A 206 LVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGPQ--GFRHN-----HLEPA 278 (574)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEETT--EESCS-----SSSCC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCcc--hhhhh-----hcccc
Confidence 4899999999999999999987755454554432221100 1112223322110 11000 00112
Q ss_pred CCeEEEEeCccccCHHHHHHHHHHhhcC
Q 003088 731 PFTLLLLDEIEKAHPDIFNILLQVFEDG 758 (849)
Q Consensus 731 ~~~vl~lDEid~l~~~~~~~Ll~~le~g 758 (849)
+..+|++||+..++...+..|+..+..+
T Consensus 279 ~~dvlIIDEasml~~~~~~~Ll~~~~~~ 306 (574)
T 3e1s_A 279 PYDLLIVDEVSMMGDALMLSLLAAVPPG 306 (574)
T ss_dssp SCSEEEECCGGGCCHHHHHHHHTTSCTT
T ss_pred cCCEEEEcCccCCCHHHHHHHHHhCcCC
Confidence 3569999999999999999999888653
No 230
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.59 E-value=0.0055 Score=62.86 Aligned_cols=38 Identities=18% Similarity=0.247 Sum_probs=27.2
Q ss_pred cHHHHHHHHHHHhcCCCCCCeEeCCCCChHHHHHHHHHHHh
Q 003088 295 RETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRI 335 (849)
Q Consensus 295 ~~~~i~~l~~~l~~~~~~niLL~GppGtGKT~la~~la~~l 335 (849)
++.+.+.+..++.. .+++++||+|+|||.++..++..+
T Consensus 95 ~~~Q~~ai~~~~~~---~~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 95 RDYQEKALERWLVD---KRGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp CHHHHHHHHHHTTT---SEEEEEESSSTTHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHhC---CCEEEEeCCCCCHHHHHHHHHHHc
Confidence 34444444444432 359999999999999999888765
No 231
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.55 E-value=0.001 Score=65.16 Aligned_cols=25 Identities=36% Similarity=0.434 Sum_probs=23.3
Q ss_pred CCCCeEeCCCCChHHHHHHHHHHHh
Q 003088 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (849)
Q Consensus 311 ~~niLL~GppGtGKT~la~~la~~l 335 (849)
..+++|+|+||+||||+++.|++.+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999999998
No 232
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.54 E-value=0.0022 Score=70.01 Aligned_cols=93 Identities=22% Similarity=0.392 Sum_probs=52.1
Q ss_pred ccceeecCCCCchHHHHHHHHHHhcCC-CCceeEeec-cccccccccccccCCCCCcccccc---CcchhHHHHhCCCeE
Q 003088 660 AAMLFCGPTGVGKTELAKSLAACYFGS-ESSMLRLDM-SEYMERHTVSKLIGSPPGYVGYEE---GGLLTEAIRRRPFTL 734 (849)
Q Consensus 660 ~~lL~~Gp~GtGKt~lA~~la~~l~~~-~~~~i~i~~-~~~~~~~~~~~l~g~~~g~vg~~~---~~~l~~~i~~~~~~v 734 (849)
+.+++.||+|+|||++.+++...+... +..++.+.- .++...+... ++.. ..++... ...+..+++..| .+
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~-~v~q--~~~~~~~~~~~~~La~aL~~~P-dv 199 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKC-LVNQ--REVHRDTLGFSEALRSALREDP-DI 199 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSS-EEEE--EEBTTTBSCHHHHHHHHTTSCC-SE
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhcccc-ceee--eeeccccCCHHHHHHHHhhhCc-CE
Confidence 359999999999999999998877322 233333321 1111100000 0000 0011110 112444445444 79
Q ss_pred EEEeCccccCHHHHHHHHHHhhcC
Q 003088 735 LLLDEIEKAHPDIFNILLQVFEDG 758 (849)
Q Consensus 735 l~lDEid~l~~~~~~~Ll~~le~g 758 (849)
|++||+- +++....++++.+.|
T Consensus 200 illDEp~--d~e~~~~~~~~~~~G 221 (356)
T 3jvv_A 200 ILVGEMR--DLETIRLALTAAETG 221 (356)
T ss_dssp EEESCCC--SHHHHHHHHHHHHTT
T ss_pred EecCCCC--CHHHHHHHHHHHhcC
Confidence 9999997 678888888887664
No 233
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.48 E-value=0.0032 Score=64.68 Aligned_cols=24 Identities=29% Similarity=0.462 Sum_probs=21.0
Q ss_pred CCCCCeEeCCCCChHHHHHHHHHH
Q 003088 310 TKNNPILLGESGVGKTAIAEGLAI 333 (849)
Q Consensus 310 ~~~niLL~GppGtGKT~la~~la~ 333 (849)
...-+.|+||+|+||||+++.++.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 445679999999999999999984
No 234
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.46 E-value=0.018 Score=56.84 Aligned_cols=113 Identities=14% Similarity=0.164 Sum_probs=64.3
Q ss_pred ccceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccc----cccccccccc----cCCCCCccccccC---------cc
Q 003088 660 AAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSE----YMERHTVSKL----IGSPPGYVGYEEG---------GL 722 (849)
Q Consensus 660 ~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~----~~~~~~~~~l----~g~~~g~vg~~~~---------~~ 722 (849)
+.+++++.+|.|||++|-.++-...+.+..+..+.... ..+......| .....+|.-..+. ..
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~ 108 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAV 108 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHH
Confidence 45999999999999999999887767776666663221 1111122222 1111133321110 00
Q ss_pred hhH---HHHhCCCeEEEEeCcc------ccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCCchhh
Q 003088 723 LTE---AIRRRPFTLLLLDEIE------KAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTI 786 (849)
Q Consensus 723 l~~---~i~~~~~~vl~lDEid------~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~l 786 (849)
+.. .+....+.+|+|||+. .++.+ .+++++.. .+.+.-+|+|+|..++.|
T Consensus 109 l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~---ev~~~l~~-----------Rp~~~~vIlTGr~ap~~l 167 (196)
T 1g5t_A 109 WQHGKRMLADPLLDMVVLDELTYMVAYDYLPLE---EVISALNA-----------RPGHQTVIITGRGCHRDI 167 (196)
T ss_dssp HHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHH---HHHHHHHT-----------SCTTCEEEEECSSCCHHH
T ss_pred HHHHHHHHhcCCCCEEEEeCCCccccCCCCCHH---HHHHHHHh-----------CcCCCEEEEECCCCcHHH
Confidence 111 1222457899999994 34443 46666665 234677999999865443
No 235
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.45 E-value=0.0047 Score=61.86 Aligned_cols=94 Identities=17% Similarity=0.164 Sum_probs=49.2
Q ss_pred ceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccc---cccccccccccCCCCCccccccCcchhHHHHhCCCeEEEEe
Q 003088 662 MLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSE---YMERHTVSKLIGSPPGYVGYEEGGLLTEAIRRRPFTLLLLD 738 (849)
Q Consensus 662 lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~---~~~~~~~~~l~g~~~g~vg~~~~~~l~~~i~~~~~~vl~lD 738 (849)
.+++||.|+|||+.+-.++..+...+...+.+.... +.+....+.+ |-.....+......+.+.+. .+..+|+||
T Consensus 31 ~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d~R~ge~~i~s~~-g~~~~a~~~~~~~~~~~~~~-~~~dvViID 108 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDNRYSEEDVVSHN-GLKVKAVPVSASKDIFKHIT-EEMDVIAID 108 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC------------------CCEEECSSGGGGGGGCC-SSCCEEEEC
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCCcchHHHHHhhc-CCeeEEeecCCHHHHHHHHh-cCCCEEEEE
Confidence 458999999999988877776655555666554321 1111112222 21111111111112222221 235799999
Q ss_pred CccccCHHHHHHHHHHhhc
Q 003088 739 EIEKAHPDIFNILLQVFED 757 (849)
Q Consensus 739 Eid~l~~~~~~~Ll~~le~ 757 (849)
|+.-++++..+.|..+.+.
T Consensus 109 EaQF~~~~~V~~l~~l~~~ 127 (214)
T 2j9r_A 109 EVQFFDGDIVEVVQVLANR 127 (214)
T ss_dssp CGGGSCTTHHHHHHHHHHT
T ss_pred CcccCCHHHHHHHHHHhhC
Confidence 9999998877665554444
No 236
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.39 E-value=0.0073 Score=66.08 Aligned_cols=79 Identities=15% Similarity=0.199 Sum_probs=45.9
Q ss_pred CCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhh----hh---ccc-------cccchHHHHHHHHH
Q 003088 310 TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGL----LM---AGA-------KERGELEARVTTLI 375 (849)
Q Consensus 310 ~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~----~~---~~~-------~~~g~~e~~l~~l~ 375 (849)
...-++|+|+||+|||++|..++..+...+ ..++.++... .. .+. ......++.+. ++
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~g-------~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~-~l 144 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKAG-------GTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALE-IM 144 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTT-------CCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHH-HH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHCC-------CeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHH-HH
Confidence 344679999999999999999998875432 2233332211 00 000 00112333332 33
Q ss_pred HHH-HhcCCeEEEEcCcchhhh
Q 003088 376 SEI-QKSGDVILFIDEVHTLIG 396 (849)
Q Consensus 376 ~~~-~~~~~~ILfIDEi~~l~~ 396 (849)
+.+ +..+..+||||.+..+.+
T Consensus 145 ~~l~~~~~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 145 ELLVRSGAIDVVVVDSVAALTP 166 (366)
T ss_dssp HHHHTTTCCSEEEEECTTTCCC
T ss_pred HHHHhcCCCCEEEEeChHHhcc
Confidence 333 345577999999999974
No 237
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.37 E-value=0.0034 Score=62.04 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=21.9
Q ss_pred CCeEeCCCCChHHHHHHHHHHHhh
Q 003088 313 NPILLGESGVGKTAIAEGLAIRIV 336 (849)
Q Consensus 313 niLL~GppGtGKT~la~~la~~l~ 336 (849)
.+.|+||+|+||||+++.|+..+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 478999999999999999999875
No 238
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.36 E-value=0.0016 Score=64.88 Aligned_cols=26 Identities=27% Similarity=0.424 Sum_probs=23.8
Q ss_pred CCCCCeEeCCCCChHHHHHHHHHHHh
Q 003088 310 TKNNPILLGESGVGKTAIAEGLAIRI 335 (849)
Q Consensus 310 ~~~niLL~GppGtGKT~la~~la~~l 335 (849)
....++|+|+||+||||+++.|++.+
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 44579999999999999999999998
No 239
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.33 E-value=0.0059 Score=65.32 Aligned_cols=95 Identities=20% Similarity=0.224 Sum_probs=57.1
Q ss_pred CCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhcc----ccccchHHHHHHHHHHHHHhcCCeEEEE
Q 003088 313 NPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAG----AKERGELEARVTTLISEIQKSGDVILFI 388 (849)
Q Consensus 313 niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~~----~~~~g~~e~~l~~l~~~~~~~~~~ILfI 388 (849)
.++|+||+|+|||+++..||+.+ +..++..|--.+..+ +.... -++ . .+-+ -.||
T Consensus 7 ~i~i~GptGsGKTtla~~La~~l----------~~~iis~Ds~qvy~~~~igTakp~-~~e--------~-~gvp-h~li 65 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADAL----------PCELISVDSALIYRGMDIGTAKPS-REL--------L-ARYP-HRLI 65 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS----------CEEEEEECTTTTBTTCCTTTTCCC-HHH--------H-HHSC-EETS
T ss_pred EEEEECCCCCCHHHHHHHHHHHc----------CCcEEeccchhhhcCCCcccCCCC-HHH--------H-cCCC-EEEe
Confidence 57999999999999999999988 566676653322111 11100 010 1 1112 3666
Q ss_pred cCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCCCeEEEEccChH
Q 003088 389 DEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQD 433 (849)
Q Consensus 389 DEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~~i~vI~at~~~ 433 (849)
|..+-....+.. .....+...+...++++++.++.-++.-
T Consensus 66 d~~~~~~~~~~~-----~F~~~a~~~i~~i~~~g~~~IlvGGt~~ 105 (323)
T 3crm_A 66 DIRDPAESYSAA-----EFRADALAAMAKATARGRIPLLVGGTML 105 (323)
T ss_dssp SCBCTTSCCCHH-----HHHHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred eccCcccccCHH-----HHHHHHHHHHHHHHHcCCeEEEECCchh
Confidence 665443221111 3466778888888888887776666653
No 240
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.29 E-value=0.0065 Score=61.44 Aligned_cols=25 Identities=36% Similarity=0.535 Sum_probs=21.8
Q ss_pred CCCCeEeCCCCChHHHHHHHHHHHh
Q 003088 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (849)
Q Consensus 311 ~~niLL~GppGtGKT~la~~la~~l 335 (849)
..-+.|+||+|+||||+++.|+..+
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3457999999999999999999865
No 241
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.28 E-value=0.0025 Score=62.13 Aligned_cols=26 Identities=38% Similarity=0.532 Sum_probs=23.8
Q ss_pred CCCCCeEeCCCCChHHHHHHHHHHHh
Q 003088 310 TKNNPILLGESGVGKTAIAEGLAIRI 335 (849)
Q Consensus 310 ~~~niLL~GppGtGKT~la~~la~~l 335 (849)
...+++|+|+||+||||+++.|++.+
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999999988
No 242
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.25 E-value=0.0085 Score=66.32 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=21.3
Q ss_pred CCCCCeEeCCCCChHHHHHHHHHHHh
Q 003088 310 TKNNPILLGESGVGKTAIAEGLAIRI 335 (849)
Q Consensus 310 ~~~niLL~GppGtGKT~la~~la~~l 335 (849)
...-++|+||||+|||+++..++...
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~ 202 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTC 202 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHh
Confidence 34567999999999999999877544
No 243
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.22 E-value=0.0067 Score=71.23 Aligned_cols=26 Identities=19% Similarity=0.397 Sum_probs=22.1
Q ss_pred CeEEEEeCccccCHHHHHHHHHHhhc
Q 003088 732 FTLLLLDEIEKAHPDIFNILLQVFED 757 (849)
Q Consensus 732 ~~vl~lDEid~l~~~~~~~Ll~~le~ 757 (849)
..+|+|||++.++...+..|+..+..
T Consensus 263 ~d~lIIDEAsml~~~~~~~Ll~~l~~ 288 (608)
T 1w36_D 263 LDVLVVDEASMIDLPMMSRLIDALPD 288 (608)
T ss_dssp CSEEEECSGGGCBHHHHHHHHHTCCT
T ss_pred CCEEEEechhhCCHHHHHHHHHhCCC
Confidence 46999999999998888888887744
No 244
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.20 E-value=0.0025 Score=61.83 Aligned_cols=24 Identities=33% Similarity=0.578 Sum_probs=22.5
Q ss_pred CCCeEeCCCCChHHHHHHHHHHHh
Q 003088 312 NNPILLGESGVGKTAIAEGLAIRI 335 (849)
Q Consensus 312 ~niLL~GppGtGKT~la~~la~~l 335 (849)
.+++|.|+||+||||+++.||+.+
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 368999999999999999999988
No 245
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.20 E-value=0.0083 Score=65.24 Aligned_cols=79 Identities=14% Similarity=0.135 Sum_probs=46.0
Q ss_pred CCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhh-------cc-------ccccchHHHHHHHHHH
Q 003088 311 KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM-------AG-------AKERGELEARVTTLIS 376 (849)
Q Consensus 311 ~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~-------~~-------~~~~g~~e~~l~~l~~ 376 (849)
..-++|+||||+|||+++..++..+...+ ..++.++..... .+ .......++.+..+..
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~g-------g~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~ 133 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKMG-------GVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDE 133 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHTT-------CCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcC-------CeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHH
Confidence 34579999999999999999998875432 222222211100 00 0001223333333333
Q ss_pred HHHhcCCeEEEEcCcchhhh
Q 003088 377 EIQKSGDVILFIDEVHTLIG 396 (849)
Q Consensus 377 ~~~~~~~~ILfIDEi~~l~~ 396 (849)
.++...+.+++||.+..+++
T Consensus 134 l~~~~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 134 LVRSGVVDLIVVDSVAALVP 153 (356)
T ss_dssp HHHTSCCSEEEEECTTTCCC
T ss_pred HhhhcCCCeEEehHhhhhcC
Confidence 33445678999999988875
No 246
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.19 E-value=0.0063 Score=63.08 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=21.4
Q ss_pred CCeEeCCCCChHHHHHHHHHHHh
Q 003088 313 NPILLGESGVGKTAIAEGLAIRI 335 (849)
Q Consensus 313 niLL~GppGtGKT~la~~la~~l 335 (849)
.++|+||||+||||+|+.||..+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 36899999999999999999988
No 247
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.18 E-value=0.021 Score=56.63 Aligned_cols=28 Identities=25% Similarity=0.247 Sum_probs=24.6
Q ss_pred CCCCCCeEeCCCCChHHHHHHHHHHHhh
Q 003088 309 RTKNNPILLGESGVGKTAIAEGLAIRIV 336 (849)
Q Consensus 309 ~~~~niLL~GppGtGKT~la~~la~~l~ 336 (849)
.....+.|+||+|+||||+++.|+..+.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4456688999999999999999999985
No 248
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.17 E-value=0.0023 Score=63.35 Aligned_cols=26 Identities=19% Similarity=0.119 Sum_probs=22.3
Q ss_pred CeEeCCCCChHHHHHHHHHHHhhhCC
Q 003088 314 PILLGESGVGKTAIAEGLAIRIVQAE 339 (849)
Q Consensus 314 iLL~GppGtGKT~la~~la~~l~~~~ 339 (849)
.+++||.|+||||.+..++.+....+
T Consensus 11 ~v~~G~mgsGKTT~ll~~a~r~~~~g 36 (191)
T 1xx6_A 11 EVIVGPMYSGKSEELIRRIRRAKIAK 36 (191)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCC
Confidence 48899999999999999999886543
No 249
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.16 E-value=0.0023 Score=62.89 Aligned_cols=25 Identities=36% Similarity=0.513 Sum_probs=22.9
Q ss_pred CCCCCeEeCCCCChHHHHHHHHHHH
Q 003088 310 TKNNPILLGESGVGKTAIAEGLAIR 334 (849)
Q Consensus 310 ~~~niLL~GppGtGKT~la~~la~~ 334 (849)
...+++|+|+||+||||+++.|++.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4567999999999999999999998
No 250
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.14 E-value=0.003 Score=60.79 Aligned_cols=23 Identities=26% Similarity=0.218 Sum_probs=21.6
Q ss_pred CCeEeCCCCChHHHHHHHHHHHh
Q 003088 313 NPILLGESGVGKTAIAEGLAIRI 335 (849)
Q Consensus 313 niLL~GppGtGKT~la~~la~~l 335 (849)
.++|.|+||+||||+++.|++.+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999988
No 251
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.12 E-value=0.0029 Score=61.86 Aligned_cols=24 Identities=33% Similarity=0.573 Sum_probs=22.3
Q ss_pred CCCeEeCCCCChHHHHHHHHHHHh
Q 003088 312 NNPILLGESGVGKTAIAEGLAIRI 335 (849)
Q Consensus 312 ~niLL~GppGtGKT~la~~la~~l 335 (849)
..++|+|+||+||||+++.|++.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 358999999999999999999988
No 252
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.11 E-value=0.0024 Score=61.48 Aligned_cols=26 Identities=27% Similarity=0.548 Sum_probs=22.9
Q ss_pred CCCCCeEeCCCCChHHHHHHHHHHHh
Q 003088 310 TKNNPILLGESGVGKTAIAEGLAIRI 335 (849)
Q Consensus 310 ~~~niLL~GppGtGKT~la~~la~~l 335 (849)
...+++|.|++|+||||+++.|++.+
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHh
Confidence 34688999999999999999999998
No 253
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.11 E-value=0.038 Score=62.88 Aligned_cols=72 Identities=14% Similarity=0.223 Sum_probs=47.1
Q ss_pred eEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCC---CeEEEEccChHHHHHHhhccHHHHhccc-cEEecCCCH
Q 003088 384 VILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG---ELQCIASTTQDEHRTQFEKDKALARRFQ-PVLISEPSQ 459 (849)
Q Consensus 384 ~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~---~i~vI~at~~~~~~~~~~~d~al~~Rf~-~i~~~~ps~ 459 (849)
.+|+|||++.++.. ...++.+.|..+...+ .+.+|.+|..... -.++..++..|. +|.|...+.
T Consensus 299 ivlvIDE~~~ll~~---------~~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~---dvl~~~i~~n~~~RI~lrv~s~ 366 (512)
T 2ius_A 299 IVVLVDEFADLMMT---------VGKKVEELIARLAQKARAAGIHLVLATQRPSV---DVITGLIKANIPTRIAFTVSSK 366 (512)
T ss_dssp EEEEEETHHHHHHH---------HHHHHHHHHHHHHHHCGGGTEEEEEEESCCCT---TTSCHHHHHHCCEEEEECCSSH
T ss_pred EEEEEeCHHHHHhh---------hhHHHHHHHHHHHHHhhhCCcEEEEEecCCcc---ccccHHHHhhcCCeEEEEcCCH
Confidence 58999999988642 1233445554443322 4677776665420 136677888886 699999999
Q ss_pred HHHHHHHH
Q 003088 460 EDAVRILL 467 (849)
Q Consensus 460 ~e~~~iL~ 467 (849)
.+...|+.
T Consensus 367 ~dsr~ilg 374 (512)
T 2ius_A 367 IDSRTILD 374 (512)
T ss_dssp HHHHHHHS
T ss_pred HHHHHhcC
Confidence 98887773
No 254
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.10 E-value=0.0086 Score=64.51 Aligned_cols=26 Identities=31% Similarity=0.569 Sum_probs=22.7
Q ss_pred CCCCCeEeCCCCChHHHHHHHHHHHh
Q 003088 310 TKNNPILLGESGVGKTAIAEGLAIRI 335 (849)
Q Consensus 310 ~~~niLL~GppGtGKT~la~~la~~l 335 (849)
...-++|+||||+|||+++..++...
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 44567999999999999999999875
No 255
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.10 E-value=0.0091 Score=61.18 Aligned_cols=103 Identities=18% Similarity=0.220 Sum_probs=54.9
Q ss_pred ceeecCCCCchHHHHHHHHHHhcCCCCceeEeecc-cccccc--ccccccCCC-CC-ccc---------cccCcchhHHH
Q 003088 662 MLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMS-EYMERH--TVSKLIGSP-PG-YVG---------YEEGGLLTEAI 727 (849)
Q Consensus 662 lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~-~~~~~~--~~~~l~g~~-~g-~vg---------~~~~~~l~~~i 727 (849)
++++||+|+|||.+|..++... +.+.+.+-.. ++.... .... +|.. .+ +.| ...-+.+....
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~~---~~~~liv~P~~~L~~q~~~~~~~-~~~~~v~~~~g~~~~~~~i~v~T~~~l~~~~ 186 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINEL---STPTLIVVPTLALAEQWKERLGI-FGEEYVGEFSGRIKELKPLTVSTYDSAYVNA 186 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHHS---CSCEEEEESSHHHHHHHHHHHGG-GCGGGEEEESSSCBCCCSEEEEEHHHHHHTH
T ss_pred EEEEeCCCCCHHHHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHh-CCCCeEEEEeCCCCCcCCEEEEeHHHHHhhH
Confidence 8999999999999998888765 2334433322 332211 0111 1111 00 000 00001111111
Q ss_pred Hh--CCCeEEEEeCccccCHHHHHHHHHHhhcCeeecCCCceeecCCeEEEEecCCC
Q 003088 728 RR--RPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVG 782 (849)
Q Consensus 728 ~~--~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~ 782 (849)
.. ....+|+|||++.+.......++..+.. ..++.+|..+.
T Consensus 187 ~~~~~~~~llIiDEaH~l~~~~~~~i~~~~~~--------------~~~l~LSATp~ 229 (237)
T 2fz4_A 187 EKLGNRFMLLIFDEVHHLPAESYVQIAQMSIA--------------PFRLGLTATFE 229 (237)
T ss_dssp HHHTTTCSEEEEECSSCCCTTTHHHHHHTCCC--------------SEEEEEEESCC
T ss_pred HHhcccCCEEEEECCccCCChHHHHHHHhccC--------------CEEEEEecCCC
Confidence 11 2467999999999987766666555432 34667777764
No 256
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=96.08 E-value=0.032 Score=64.60 Aligned_cols=44 Identities=14% Similarity=0.213 Sum_probs=34.6
Q ss_pred cccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHH
Q 003088 632 IGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAA 681 (849)
Q Consensus 632 ~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~ 681 (849)
+|.+..++.|...+.... ......+.++|+.|+|||++|+.+++
T Consensus 131 ~GR~~~~~~l~~~L~~~~------~~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC------DLDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT------TSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhccc------CCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 599999999988886431 11123488999999999999999996
No 257
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.05 E-value=0.0067 Score=65.13 Aligned_cols=24 Identities=29% Similarity=0.547 Sum_probs=22.3
Q ss_pred CCCeEeCCCCChHHHHHHHHHHHh
Q 003088 312 NNPILLGESGVGKTAIAEGLAIRI 335 (849)
Q Consensus 312 ~niLL~GppGtGKT~la~~la~~l 335 (849)
..++|+||+|+|||+|+..||+++
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHC
Confidence 468999999999999999999988
No 258
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.02 E-value=0.0099 Score=60.04 Aligned_cols=36 Identities=17% Similarity=0.220 Sum_probs=26.3
Q ss_pred cceeecCCCCchHHHHHHHHHHhcCCCCceeEeecc
Q 003088 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMS 696 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~ 696 (849)
.++++||+|+|||++++.++..+...+..++.++..
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~ 60 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTE 60 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESS
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcc
Confidence 388999999999999999996653333445555543
No 259
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.01 E-value=0.012 Score=64.00 Aligned_cols=84 Identities=19% Similarity=0.199 Sum_probs=48.3
Q ss_pred cceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccccccCCCCCcccc---ccCcc----hhHHHHhCCCe
Q 003088 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGY---EEGGL----LTEAIRRRPFT 733 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~vg~---~~~~~----l~~~i~~~~~~ 733 (849)
.++++||||+|||+++..++..+...+..++.++..+..... ...-+|.....+-. ..... +...++.....
T Consensus 63 i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~-ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~~~~d 141 (356)
T 3hr8_A 63 IVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPV-YAKNLGVDLKSLLISQPDHGEQALEIVDELVRSGVVD 141 (356)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH-HHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHTSCCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchH-HHHHcCCchhhhhhhhccCHHHHHHHHHHHhhhcCCC
Confidence 388999999999999999998765445567777766533321 11112211110000 00011 12223335567
Q ss_pred EEEEeCccccCH
Q 003088 734 LLLLDEIEKAHP 745 (849)
Q Consensus 734 vl~lDEid~l~~ 745 (849)
+++||.+..+.+
T Consensus 142 lvVIDSi~~l~~ 153 (356)
T 3hr8_A 142 LIVVDSVAALVP 153 (356)
T ss_dssp EEEEECTTTCCC
T ss_pred eEEehHhhhhcC
Confidence 999999987764
No 260
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.93 E-value=0.0042 Score=59.91 Aligned_cols=24 Identities=38% Similarity=0.616 Sum_probs=22.4
Q ss_pred CCCeEeCCCCChHHHHHHHHHHHh
Q 003088 312 NNPILLGESGVGKTAIAEGLAIRI 335 (849)
Q Consensus 312 ~niLL~GppGtGKT~la~~la~~l 335 (849)
..++|+|++|+||||+++.|+..+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999987
No 261
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.93 E-value=0.011 Score=61.47 Aligned_cols=88 Identities=19% Similarity=0.351 Sum_probs=47.7
Q ss_pred ccceeecCCCCchHHHHHHHHHHhcCC-CCceeEeeccccccccccccccCCCCCcc-----cccc---CcchhHHHHhC
Q 003088 660 AAMLFCGPTGVGKTELAKSLAACYFGS-ESSMLRLDMSEYMERHTVSKLIGSPPGYV-----GYEE---GGLLTEAIRRR 730 (849)
Q Consensus 660 ~~lL~~Gp~GtGKt~lA~~la~~l~~~-~~~~i~i~~~~~~~~~~~~~l~g~~~g~v-----g~~~---~~~l~~~i~~~ 730 (849)
..+++.||+|+|||++.+.++..+... ...++... ..+. .++..+.+++ |... ...+..++...
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g-~~i~------~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~ 98 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIE-DPIE------YVFKHKKSIVNQREVGEDTKSFADALRAALRED 98 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEE-SSCC------SCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHC
T ss_pred CEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcC-Ccce------eecCCcceeeeHHHhCCCHHHHHHHHHHHHhhC
Confidence 358999999999999999999876322 22232221 1110 0000000111 1111 11244455554
Q ss_pred CCeEEEEeCccccCHHHHHHHHHHhhc
Q 003088 731 PFTLLLLDEIEKAHPDIFNILLQVFED 757 (849)
Q Consensus 731 ~~~vl~lDEid~l~~~~~~~Ll~~le~ 757 (849)
| .+|++||.- +++....+++..+.
T Consensus 99 p-~illlDEp~--D~~~~~~~l~~~~~ 122 (261)
T 2eyu_A 99 P-DVIFVGEMR--DLETVETALRAAET 122 (261)
T ss_dssp C-SEEEESCCC--SHHHHHHHHHHHHT
T ss_pred C-CEEEeCCCC--CHHHHHHHHHHHcc
Confidence 4 699999997 66655555555544
No 262
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.91 E-value=0.0072 Score=58.76 Aligned_cols=25 Identities=36% Similarity=0.344 Sum_probs=18.5
Q ss_pred CCCCeEeCCCCChHHHHHHHHHHHh
Q 003088 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (849)
Q Consensus 311 ~~niLL~GppGtGKT~la~~la~~l 335 (849)
...++|.|+||+||||+++.|++.+
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3468899999999999999999987
No 263
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.90 E-value=0.014 Score=60.70 Aligned_cols=27 Identities=33% Similarity=0.416 Sum_probs=23.5
Q ss_pred CCCeEeCCCCChHHHHHHHHHHHhhhC
Q 003088 312 NNPILLGESGVGKTAIAEGLAIRIVQA 338 (849)
Q Consensus 312 ~niLL~GppGtGKT~la~~la~~l~~~ 338 (849)
..++|.|+||+||||+++.|+..+...
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~ 31 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKN 31 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhC
Confidence 458999999999999999999987543
No 264
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.85 E-value=0.0039 Score=60.44 Aligned_cols=35 Identities=14% Similarity=0.380 Sum_probs=27.8
Q ss_pred cceeecCCCCchHHHHHHHHHHhcCCCCceeEeecccc
Q 003088 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEY 698 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~ 698 (849)
.+++.|+||+|||++|+.|++.+ +.+++.++...+
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~l---~~~~~~~~~D~~ 39 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSVL---PEPWLAFGVDSL 39 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHS---SSCEEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc---CCCeEEeccchH
Confidence 38899999999999999999986 345666555443
No 265
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.83 E-value=0.015 Score=63.06 Aligned_cols=26 Identities=23% Similarity=0.303 Sum_probs=22.3
Q ss_pred CCCCCeEeCCCCChHHHHHHHHHHHh
Q 003088 310 TKNNPILLGESGVGKTAIAEGLAIRI 335 (849)
Q Consensus 310 ~~~niLL~GppGtGKT~la~~la~~l 335 (849)
...-++|+||||+|||+++..+|...
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~ 146 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTA 146 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34457999999999999999999874
No 266
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.82 E-value=0.0053 Score=66.95 Aligned_cols=29 Identities=14% Similarity=0.241 Sum_probs=24.8
Q ss_pred CCCCCCeEeCCCCChHHHHHHHHHHHhhh
Q 003088 309 RTKNNPILLGESGVGKTAIAEGLAIRIVQ 337 (849)
Q Consensus 309 ~~~~niLL~GppGtGKT~la~~la~~l~~ 337 (849)
.....++++||+|+||||+.++++..+..
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~~~ 149 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYLNN 149 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccC
Confidence 34448999999999999999999998864
No 267
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.79 E-value=0.0045 Score=62.49 Aligned_cols=26 Identities=31% Similarity=0.446 Sum_probs=23.4
Q ss_pred CCCCCeEeCCCCChHHHHHHHHHHHh
Q 003088 310 TKNNPILLGESGVGKTAIAEGLAIRI 335 (849)
Q Consensus 310 ~~~niLL~GppGtGKT~la~~la~~l 335 (849)
+...++|.|+||+||||+++.|++.+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34578999999999999999999988
No 268
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.78 E-value=0.017 Score=56.85 Aligned_cols=90 Identities=14% Similarity=0.116 Sum_probs=48.7
Q ss_pred ceeecCCCCchH-HHHHHHHHHhcCCCCceeEeecc---ccccccccccccCCCCCccccccCcchhHHHHhCCCeEEEE
Q 003088 662 MLFCGPTGVGKT-ELAKSLAACYFGSESSMLRLDMS---EYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRRRPFTLLLL 737 (849)
Q Consensus 662 lL~~Gp~GtGKt-~lA~~la~~l~~~~~~~i~i~~~---~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~i~~~~~~vl~l 737 (849)
.+++||.|+||| +|.+++.+.... +...+.+... .+.+ ...+.+ |....-+-......+.+..+. ..+|+|
T Consensus 23 ~fiyG~MgsGKTt~Ll~~i~n~~~~-~~kvl~~kp~~D~R~~~-~i~S~~-g~~~~A~~~~~~~d~~~~~~~--~DvIlI 97 (195)
T 1w4r_A 23 QVILGPMFSGKSTELMRRVRRFQIA-QYKCLVIKYAKDTRYSS-SFCTHD-RNTMEALPACLLRDVAQEALG--VAVIGI 97 (195)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHT-TCCEEEEEETTCCCGGG-SCCHHH-HHHSEEEEESSGGGGHHHHHT--CSEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHc-CCeEEEEccccCccchh-hhhhcc-CCcccceecCCHHHHHHhccC--CCEEEE
Confidence 678999999999 899999887654 3445555432 1111 111111 100000001112234443332 459999
Q ss_pred eCccccCHHHHHHHHHHhhc
Q 003088 738 DEIEKAHPDIFNILLQVFED 757 (849)
Q Consensus 738 DEid~l~~~~~~~Ll~~le~ 757 (849)
||+.-+ +++.+.+..+.+.
T Consensus 98 DEaQFf-k~~ve~~~~L~~~ 116 (195)
T 1w4r_A 98 DEGQFF-PDIVEFCEAMANA 116 (195)
T ss_dssp SSGGGC-TTHHHHHHHHHHT
T ss_pred Echhhh-HHHHHHHHHHHHC
Confidence 999999 7655555444444
No 269
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.78 E-value=0.0051 Score=59.23 Aligned_cols=24 Identities=25% Similarity=0.469 Sum_probs=22.3
Q ss_pred CCCeEeCCCCChHHHHHHHHHHHh
Q 003088 312 NNPILLGESGVGKTAIAEGLAIRI 335 (849)
Q Consensus 312 ~niLL~GppGtGKT~la~~la~~l 335 (849)
..++|.|+||+||||+++.|++.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999999988
No 270
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.77 E-value=0.012 Score=62.17 Aligned_cols=35 Identities=26% Similarity=0.427 Sum_probs=27.2
Q ss_pred cceeecCCCCchHHHHHHHHHHhcCCCCceeEeecccc
Q 003088 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEY 698 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~ 698 (849)
.++|.||||+|||++|+.|++.+. ..++.+++..+
T Consensus 35 livl~G~sGsGKSTla~~L~~~~~---~~~~~Is~D~~ 69 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLRSAIFEETQ---GNVIVIDNDTF 69 (287)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHTT---TCCEEECTHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC---CCeEEEechHh
Confidence 488999999999999999998752 23566666443
No 271
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=95.76 E-value=0.035 Score=65.10 Aligned_cols=27 Identities=26% Similarity=0.476 Sum_probs=23.3
Q ss_pred CCCCeEeCCCCChHHHHHHHHHHHhhh
Q 003088 311 KNNPILLGESGVGKTAIAEGLAIRIVQ 337 (849)
Q Consensus 311 ~~niLL~GppGtGKT~la~~la~~l~~ 337 (849)
...+++.|+||||||+++..+...+..
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l~~ 190 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAALIQ 190 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 467899999999999999988887753
No 272
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.75 E-value=0.015 Score=63.29 Aligned_cols=83 Identities=16% Similarity=0.228 Sum_probs=46.9
Q ss_pred cceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccccccCCCCCcccc---ccCcc----hhHHHHhCCCe
Q 003088 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGY---EEGGL----LTEAIRRRPFT 733 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~vg~---~~~~~----l~~~i~~~~~~ 733 (849)
.++++||||+|||++|..++......+..++.++........ ...-+|.....+-. ..... +...++.....
T Consensus 63 iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~-~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~~~~~ 141 (349)
T 2zr9_A 63 VIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPE-YAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGALD 141 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH-HHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHH-HHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhcCCCC
Confidence 389999999999999999987654445567777765432211 11112211100000 00111 11223344568
Q ss_pred EEEEeCccccC
Q 003088 734 LLLLDEIEKAH 744 (849)
Q Consensus 734 vl~lDEid~l~ 744 (849)
+|+||++..+-
T Consensus 142 lIVIDsl~~l~ 152 (349)
T 2zr9_A 142 IIVIDSVAALV 152 (349)
T ss_dssp EEEEECGGGCC
T ss_pred EEEEcChHhhc
Confidence 99999999885
No 273
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.74 E-value=0.027 Score=62.76 Aligned_cols=40 Identities=25% Similarity=0.278 Sum_probs=31.2
Q ss_pred CccceeecCCCCchHHHHHHHHHHhcCCCCceeEeecccc
Q 003088 659 TAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEY 698 (849)
Q Consensus 659 ~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~ 698 (849)
...++|.|++|+|||+++..||..+...+..+..+++..+
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~ 136 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVY 136 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCcc
Confidence 3458899999999999999999888655666666666543
No 274
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.73 E-value=0.0053 Score=59.98 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=21.7
Q ss_pred cceeecCCCCchHHHHHHHHHHh
Q 003088 661 AMLFCGPTGVGKTELAKSLAACY 683 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~l 683 (849)
.++|+|++|+|||++|+.|++.+
T Consensus 7 ~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999987
No 275
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.73 E-value=0.016 Score=61.35 Aligned_cols=92 Identities=22% Similarity=0.204 Sum_probs=55.0
Q ss_pred CCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhc----cccccchHHHHHHHHHHHHHhcCCeEEEE
Q 003088 313 NPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA----GAKERGELEARVTTLISEIQKSGDVILFI 388 (849)
Q Consensus 313 niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~----~~~~~g~~e~~l~~l~~~~~~~~~~ILfI 388 (849)
-++|.||+|+|||+++..||+.+ +..+++.|-..+.. ++..... .+. .+-.=-||
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~----------~~~iis~Ds~QvYr~~~igTakp~~---------~E~--~gvphhli 63 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRL----------NGEVISGDSMQVYRGMDIGTAKITA---------EEM--DGVPHHLI 63 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTT----------TEEEEECCGGGGBTTCCTTTTCCCH---------HHH--TTCCEESS
T ss_pred EEEEECCCcCCHHHHHHHHHHhC----------ccceeecCcccceeeeeecCCCCCH---------HHH--cCCCEEEe
Confidence 46889999999999999999987 44566555332221 1111100 111 11123556
Q ss_pred cCcchh--hhCCCCCCCCCCccHHHHHHHhhhhcCCCeEEEEccCh
Q 003088 389 DEVHTL--IGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQ 432 (849)
Q Consensus 389 DEi~~l--~~~~~~~~~~~~~~~~~~~~L~~~le~~~i~vI~at~~ 432 (849)
|.++-- +..+ ....++...+..+.++|++.+|.-+|.
T Consensus 64 d~~~~~e~~s~~-------~F~~~a~~~i~~i~~~gk~pIlVGGTg 102 (322)
T 3exa_A 64 DIKDPSESFSVA-------DFQDLATPLITEIHERGRLPFLVGGTG 102 (322)
T ss_dssp SCBCTTSCCCHH-------HHHHHHHHHHHHHHHTTCEEEEESCCH
T ss_pred ccCChhhhccHH-------HHHHHHHHHHHHHHhCCCcEEEEcCcH
Confidence 544322 1111 446778888989999998877766664
No 276
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.71 E-value=0.0089 Score=65.05 Aligned_cols=29 Identities=21% Similarity=0.146 Sum_probs=24.1
Q ss_pred CCCCCeEeCCCCChHHHHHHHHHHHhhhC
Q 003088 310 TKNNPILLGESGVGKTAIAEGLAIRIVQA 338 (849)
Q Consensus 310 ~~~niLL~GppGtGKT~la~~la~~l~~~ 338 (849)
...-++|+||||+|||+++..++..+...
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~ 88 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAA 88 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 34557999999999999999999877543
No 277
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.70 E-value=0.0038 Score=61.31 Aligned_cols=25 Identities=28% Similarity=0.434 Sum_probs=22.5
Q ss_pred CCCCeEeCCCCChHHHHHHHHHHHh
Q 003088 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (849)
Q Consensus 311 ~~niLL~GppGtGKT~la~~la~~l 335 (849)
+..++|.|+||+||||+++.|++.+
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 3457999999999999999999988
No 278
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.69 E-value=0.0068 Score=60.26 Aligned_cols=25 Identities=28% Similarity=0.523 Sum_probs=22.8
Q ss_pred CCCCeEeCCCCChHHHHHHHHHHHh
Q 003088 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (849)
Q Consensus 311 ~~niLL~GppGtGKT~la~~la~~l 335 (849)
...++|.|++|+||||+++.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3468999999999999999999987
No 279
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.69 E-value=0.017 Score=61.06 Aligned_cols=92 Identities=18% Similarity=0.226 Sum_probs=55.2
Q ss_pred CCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhc----cccccchHHHHHHHHHHHHHhcCCeEEEE
Q 003088 313 NPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA----GAKERGELEARVTTLISEIQKSGDVILFI 388 (849)
Q Consensus 313 niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~----~~~~~g~~e~~l~~l~~~~~~~~~~ILfI 388 (849)
-++|.||+|+|||+++..||+.+ +..+++.|-..+.. ++.....- +...- + =-||
T Consensus 12 ~i~i~GptgsGKt~la~~La~~~----------~~~iis~Ds~qvY~~~~igTakp~~~---------E~~~v-~-hhli 70 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIELRKIL----------PVELISVDSALIYKGMDIGTAKPNAE---------ELLAA-P-HRLL 70 (316)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS----------CEEEEECCTTTTBTTCCTTTTCCCHH---------HHHHS-C-EETS
T ss_pred EEEEECCCccCHHHHHHHHHHhC----------CCcEEecccccccccccccCCCCCHH---------HHcCC-C-EEEe
Confidence 36889999999999999999987 55666665333221 11111100 11111 1 3455
Q ss_pred cCcchh--hhCCCCCCCCCCccHHHHHHHhhhhcCCCeEEEEccCh
Q 003088 389 DEVHTL--IGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQ 432 (849)
Q Consensus 389 DEi~~l--~~~~~~~~~~~~~~~~~~~~L~~~le~~~i~vI~at~~ 432 (849)
|.++-- +..+ +...++...+..+.++|++.+|.-+|.
T Consensus 71 d~~~~~e~~s~~-------~f~~~a~~~i~~i~~~g~~pilVGGTg 109 (316)
T 3foz_A 71 DIRDPSQAYSAA-------DFRRDALAEMADITAAGRIPLLVGGTM 109 (316)
T ss_dssp SCBCTTSCCCHH-------HHHHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred ccCCccccccHH-------HHHHHHHHHHHHHHhCCCcEEEEcCcH
Confidence 544321 1111 457788889999999999876665664
No 280
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=95.67 E-value=0.021 Score=58.76 Aligned_cols=24 Identities=29% Similarity=0.513 Sum_probs=20.7
Q ss_pred CCCCeEeCCCCChHHHHHHHHHHH
Q 003088 311 KNNPILLGESGVGKTAIAEGLAIR 334 (849)
Q Consensus 311 ~~niLL~GppGtGKT~la~~la~~ 334 (849)
.-+|+|+|.||+|||+++..|...
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTS
T ss_pred ceEEEEECCCCCcHHHHHHHHhCC
Confidence 347899999999999999988753
No 281
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.66 E-value=0.0055 Score=60.84 Aligned_cols=25 Identities=36% Similarity=0.493 Sum_probs=22.6
Q ss_pred CCCCeEeCCCCChHHHHHHHHHHHh
Q 003088 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (849)
Q Consensus 311 ~~niLL~GppGtGKT~la~~la~~l 335 (849)
+..++|+|+||+||||+++.|++.+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3468999999999999999999988
No 282
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.65 E-value=0.017 Score=58.86 Aligned_cols=36 Identities=17% Similarity=0.248 Sum_probs=27.0
Q ss_pred cceeecCCCCchHHHHHHHHHHhcCCCCceeEeecc
Q 003088 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMS 696 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~ 696 (849)
.++++||||+|||+++..++......+.+.+.++..
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e 60 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 388999999999999988876654344556666554
No 283
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.65 E-value=0.0049 Score=59.15 Aligned_cols=22 Identities=27% Similarity=0.327 Sum_probs=19.8
Q ss_pred CCeEeCCCCChHHHHHHHHHHHh
Q 003088 313 NPILLGESGVGKTAIAEGLAIRI 335 (849)
Q Consensus 313 niLL~GppGtGKT~la~~la~~l 335 (849)
.++|.|+||+||||+++.| +.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHT
T ss_pred EEEEECCCCCCHHHHHHHH-HHC
Confidence 5789999999999999999 665
No 284
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.64 E-value=0.059 Score=60.04 Aligned_cols=27 Identities=33% Similarity=0.299 Sum_probs=23.5
Q ss_pred CCCeEeCCCCChHHHHHHHHHHHhhhC
Q 003088 312 NNPILLGESGVGKTAIAEGLAIRIVQA 338 (849)
Q Consensus 312 ~niLL~GppGtGKT~la~~la~~l~~~ 338 (849)
..++++|++|+||||++..||..+...
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA~~l~~~ 124 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLAYFYKKR 124 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 346899999999999999999988654
No 285
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.62 E-value=0.016 Score=59.87 Aligned_cols=36 Identities=22% Similarity=0.442 Sum_probs=28.4
Q ss_pred ccceeecCCCCchHHHHHHHHHHhcCCCCceeEeecccc
Q 003088 660 AAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEY 698 (849)
Q Consensus 660 ~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~ 698 (849)
..++|.|+||+|||++|+.|++.+. ...+.++...+
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~~l~---~~~~~~~~D~~ 68 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQKEFQ---GNIVIIDGDSF 68 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHHHTT---TCCEEECGGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC---CCcEEEecHHH
Confidence 4589999999999999999999862 23566666554
No 286
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.61 E-value=0.0052 Score=60.51 Aligned_cols=26 Identities=23% Similarity=0.365 Sum_probs=23.5
Q ss_pred CCCCCeEeCCCCChHHHHHHHHHHHh
Q 003088 310 TKNNPILLGESGVGKTAIAEGLAIRI 335 (849)
Q Consensus 310 ~~~niLL~GppGtGKT~la~~la~~l 335 (849)
+...++|.|+||+||||+++.|++.+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 44578999999999999999999988
No 287
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.58 E-value=0.021 Score=61.51 Aligned_cols=87 Identities=20% Similarity=0.347 Sum_probs=48.7
Q ss_pred ceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccccccCCCCCcc---ccccCcchhHHHHhCCCeEEEEe
Q 003088 662 MLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYV---GYEEGGLLTEAIRRRPFTLLLLD 738 (849)
Q Consensus 662 lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~v---g~~~~~~l~~~i~~~~~~vl~lD 738 (849)
+++.||+|+|||++.++|+..+.. ....+.++.............+ +++ |......+..++... ..+|++|
T Consensus 174 v~i~G~~GsGKTTll~~l~g~~~~-~~g~i~i~~~~e~~~~~~~~~i----~~~~ggg~~~r~~la~aL~~~-p~ilild 247 (330)
T 2pt7_A 174 VIVCGGTGSGKTTYIKSIMEFIPK-EERIISIEDTEEIVFKHHKNYT----QLFFGGNITSADCLKSCLRMR-PDRIILG 247 (330)
T ss_dssp EEEEESTTSCHHHHHHHGGGGSCT-TSCEEEEESSCCCCCSSCSSEE----EEECBTTBCHHHHHHHHTTSC-CSEEEEC
T ss_pred EEEECCCCCCHHHHHHHHhCCCcC-CCcEEEECCeeccccccchhEE----EEEeCCChhHHHHHHHHhhhC-CCEEEEc
Confidence 999999999999999999987633 3345666543211100000000 011 222222344444444 4799999
Q ss_pred CccccCHHHHHHHHHHhhc
Q 003088 739 EIEKAHPDIFNILLQVFED 757 (849)
Q Consensus 739 Eid~l~~~~~~~Ll~~le~ 757 (849)
|+-. .++++ +++.+..
T Consensus 248 E~~~--~e~~~-~l~~~~~ 263 (330)
T 2pt7_A 248 ELRS--SEAYD-FYNVLCS 263 (330)
T ss_dssp CCCS--THHHH-HHHHHHT
T ss_pred CCCh--HHHHH-HHHHHhc
Confidence 9976 45555 4455544
No 288
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.57 E-value=0.008 Score=58.82 Aligned_cols=25 Identities=24% Similarity=0.321 Sum_probs=22.6
Q ss_pred CCeEeCCCCChHHHHHHHHHHHhhh
Q 003088 313 NPILLGESGVGKTAIAEGLAIRIVQ 337 (849)
Q Consensus 313 niLL~GppGtGKT~la~~la~~l~~ 337 (849)
.++|.|+||+||||+++.|++.+..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4789999999999999999999853
No 289
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=95.55 E-value=0.015 Score=67.87 Aligned_cols=46 Identities=20% Similarity=0.271 Sum_probs=35.5
Q ss_pred ccccccHHHHHHHHHHHHHhhcCCCCCCCCCccceeecCCCCchHHHHHHHHH
Q 003088 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAA 681 (849)
Q Consensus 629 ~~i~Gq~~~i~~l~~~l~~~~~g~~~~~~p~~~lL~~Gp~GtGKt~lA~~la~ 681 (849)
..++|.+..++.|...+.... .....++++|++|+|||++|..+++
T Consensus 124 ~~~vGR~~~l~~L~~~L~~~~-------~~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 124 VVFVTRKKLVNAIQQKLSKLK-------GEPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp SSCCCCHHHHHHHHHHHTTST-------TSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred CeecccHHHHHHHHHHHhccc-------CCCceEEEEcCCCCCHHHHHHHHHh
Confidence 458999999999988875321 1113489999999999999998863
No 290
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.54 E-value=0.02 Score=60.02 Aligned_cols=29 Identities=28% Similarity=0.357 Sum_probs=24.4
Q ss_pred CCCCCeEeCCCCChHHHHHHHHHHHhhhC
Q 003088 310 TKNNPILLGESGVGKTAIAEGLAIRIVQA 338 (849)
Q Consensus 310 ~~~niLL~GppGtGKT~la~~la~~l~~~ 338 (849)
...-++|+||+|+||||++..++..+..+
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~~g 57 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQIAGG 57 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHTC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHhcC
Confidence 44567999999999999999999877654
No 291
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.53 E-value=0.0053 Score=61.70 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=21.4
Q ss_pred CCeEeCCCCChHHHHHHHHHHHh
Q 003088 313 NPILLGESGVGKTAIAEGLAIRI 335 (849)
Q Consensus 313 niLL~GppGtGKT~la~~la~~l 335 (849)
+++|+|+||+||||+++.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999887
No 292
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.52 E-value=0.018 Score=62.72 Aligned_cols=84 Identities=15% Similarity=0.239 Sum_probs=48.4
Q ss_pred cceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccccccCCCCCc--ccc-ccCcc----hhHHHHhCCCe
Q 003088 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGY--VGY-EEGGL----LTEAIRRRPFT 733 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~--vg~-~~~~~----l~~~i~~~~~~ 733 (849)
.++++|+||+|||++|..++......+.+++.++.....+... ..-+|..... +.. ..... +...++.....
T Consensus 65 ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~-a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~~~~~ 143 (356)
T 1u94_A 65 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY-ARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVD 143 (356)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHH-HHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHH-HHHcCCChhheeeeCCCCHHHHHHHHHHHHhccCCC
Confidence 3899999999999999999877644455677787754322211 1111211100 000 00011 22233345678
Q ss_pred EEEEeCccccCH
Q 003088 734 LLLLDEIEKAHP 745 (849)
Q Consensus 734 vl~lDEid~l~~ 745 (849)
+|+||.+..+.+
T Consensus 144 lVVIDsl~~l~~ 155 (356)
T 1u94_A 144 VIVVDSVAALTP 155 (356)
T ss_dssp EEEEECGGGCCC
T ss_pred EEEEcCHHHhcc
Confidence 999999988763
No 293
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.52 E-value=0.0045 Score=62.00 Aligned_cols=24 Identities=21% Similarity=0.075 Sum_probs=21.2
Q ss_pred eEeCCCCChHHHHHHHHHHHhhhC
Q 003088 315 ILLGESGVGKTAIAEGLAIRIVQA 338 (849)
Q Consensus 315 LL~GppGtGKT~la~~la~~l~~~ 338 (849)
+++|+.|+||||.+-.++.+....
T Consensus 32 vitG~MgsGKTT~lL~~a~r~~~~ 55 (214)
T 2j9r_A 32 VICGSMFSGKSEELIRRVRRTQFA 55 (214)
T ss_dssp EEECSTTSCHHHHHHHHHHHHHHT
T ss_pred EEECCCCCcHHHHHHHHHHHHHHC
Confidence 689999999999999999887654
No 294
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.51 E-value=0.02 Score=62.52 Aligned_cols=82 Identities=17% Similarity=0.258 Sum_probs=46.6
Q ss_pred ceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccccccccccccCCCCCc--ccc-ccCcc----hhHHHHhCCCeE
Q 003088 662 MLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGY--VGY-EEGGL----LTEAIRRRPFTL 734 (849)
Q Consensus 662 lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~--vg~-~~~~~----l~~~i~~~~~~v 734 (849)
++++|+||+|||++|..++......+.+++.++...-.+... ..-+|..... +-. ..... +...++.....+
T Consensus 77 i~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~-a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~~~~~l 155 (366)
T 1xp8_A 77 TEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVY-ARALGVNTDELLVSQPDNGEQALEIMELLVRSGAIDV 155 (366)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHH-HHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCSE
T ss_pred EEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHH-HHHcCCCHHHceeecCCcHHHHHHHHHHHHhcCCCCE
Confidence 889999999999999988876644455677777654322211 1111211100 000 00111 222233345689
Q ss_pred EEEeCccccC
Q 003088 735 LLLDEIEKAH 744 (849)
Q Consensus 735 l~lDEid~l~ 744 (849)
||||.+..+.
T Consensus 156 VVIDsl~~l~ 165 (366)
T 1xp8_A 156 VVVDSVAALT 165 (366)
T ss_dssp EEEECTTTCC
T ss_pred EEEeChHHhc
Confidence 9999998775
No 295
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.49 E-value=0.018 Score=62.64 Aligned_cols=26 Identities=38% Similarity=0.547 Sum_probs=22.7
Q ss_pred CCCCCeEeCCCCChHHHHHHHHHHHh
Q 003088 310 TKNNPILLGESGVGKTAIAEGLAIRI 335 (849)
Q Consensus 310 ~~~niLL~GppGtGKT~la~~la~~l 335 (849)
...-+.|+||+|+|||+++..++..+
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 44557899999999999999999876
No 296
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.49 E-value=0.0072 Score=59.16 Aligned_cols=37 Identities=14% Similarity=0.232 Sum_probs=29.4
Q ss_pred ceeecCCCCchHHHHHHHHHHhcCCCCceeEeecccc
Q 003088 662 MLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEY 698 (849)
Q Consensus 662 lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~ 698 (849)
++|.|+||+|||++|+.|++.+...+.++..++..++
T Consensus 4 I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~ 40 (194)
T 1nks_A 4 GIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDF 40 (194)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChH
Confidence 8899999999999999999988544455666665444
No 297
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.46 E-value=0.019 Score=62.53 Aligned_cols=29 Identities=14% Similarity=0.130 Sum_probs=24.5
Q ss_pred CCCCCeEeCCCCChHHHHHHHHHHHhhhC
Q 003088 310 TKNNPILLGESGVGKTAIAEGLAIRIVQA 338 (849)
Q Consensus 310 ~~~niLL~GppGtGKT~la~~la~~l~~~ 338 (849)
....++|+|+||+|||++|..++..+...
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~ 90 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQRE 90 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 44568999999999999999999887653
No 298
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.46 E-value=0.0089 Score=57.35 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=21.0
Q ss_pred ceeecCCCCchHHHHHHHHHHh
Q 003088 662 MLFCGPTGVGKTELAKSLAACY 683 (849)
Q Consensus 662 lL~~Gp~GtGKt~lA~~la~~l 683 (849)
++|.|++|+|||++|+.|++.+
T Consensus 4 i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 4 IILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8899999999999999999986
No 299
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.46 E-value=0.0078 Score=59.74 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=21.7
Q ss_pred cceeecCCCCchHHHHHHHHHHh
Q 003088 661 AMLFCGPTGVGKTELAKSLAACY 683 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~l 683 (849)
.++|.|++|+|||++++.|++.+
T Consensus 27 ~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 49999999999999999999987
No 300
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.46 E-value=0.0073 Score=61.61 Aligned_cols=25 Identities=36% Similarity=0.473 Sum_probs=23.1
Q ss_pred CCCCeEeCCCCChHHHHHHHHHHHh
Q 003088 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (849)
Q Consensus 311 ~~niLL~GppGtGKT~la~~la~~l 335 (849)
..+++|.|+||+||||+++.|++.+
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999999998
No 301
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.45 E-value=0.023 Score=62.32 Aligned_cols=88 Identities=18% Similarity=0.300 Sum_probs=48.7
Q ss_pred ccceeecCCCCchHHHHHHHHHHhcCC-CCceeEeeccccccccccccccCCCCCcccc-----cc---CcchhHHHHhC
Q 003088 660 AAMLFCGPTGVGKTELAKSLAACYFGS-ESSMLRLDMSEYMERHTVSKLIGSPPGYVGY-----EE---GGLLTEAIRRR 730 (849)
Q Consensus 660 ~~lL~~Gp~GtGKt~lA~~la~~l~~~-~~~~i~i~~~~~~~~~~~~~l~g~~~g~vg~-----~~---~~~l~~~i~~~ 730 (849)
..++++||+|+|||++.++|+..+... ...++.++.+ . + . .+...-+++.. .. ...+..+++..
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~-~-e-~----~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~ 209 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP-I-E-Y----VFKHKKSIVNQREVGEDTKSFADALRAALRED 209 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESS-C-C-S----CCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEeccc-H-h-h----hhccCceEEEeeecCCCHHHHHHHHHHHhhhC
Confidence 359999999999999999999876432 3344444321 1 0 0 00111112211 11 11233444443
Q ss_pred CCeEEEEeCccccCHHHHHHHHHHhhc
Q 003088 731 PFTLLLLDEIEKAHPDIFNILLQVFED 757 (849)
Q Consensus 731 ~~~vl~lDEid~l~~~~~~~Ll~~le~ 757 (849)
..+|++||+- +++....+++....
T Consensus 210 -pd~illdE~~--d~e~~~~~l~~~~~ 233 (372)
T 2ewv_A 210 -PDVIFVGEMR--DLETVETALRAAET 233 (372)
T ss_dssp -CSEEEESCCC--SHHHHHHHHHHHTT
T ss_pred -cCEEEECCCC--CHHHHHHHHHHHhc
Confidence 4699999996 45555555555544
No 302
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.45 E-value=0.0063 Score=59.41 Aligned_cols=24 Identities=38% Similarity=0.535 Sum_probs=22.1
Q ss_pred CCCeEeCCCCChHHHHHHHHHHHh
Q 003088 312 NNPILLGESGVGKTAIAEGLAIRI 335 (849)
Q Consensus 312 ~niLL~GppGtGKT~la~~la~~l 335 (849)
..++|+|+||+||||+++.|++.+
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 358999999999999999999987
No 303
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.44 E-value=0.0061 Score=61.19 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=21.4
Q ss_pred CCeEeCCCCChHHHHHHHHHHHh
Q 003088 313 NPILLGESGVGKTAIAEGLAIRI 335 (849)
Q Consensus 313 niLL~GppGtGKT~la~~la~~l 335 (849)
+++|.|+||+||||+++.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999987
No 304
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.43 E-value=0.0075 Score=59.17 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=22.0
Q ss_pred CCCeEeCCCCChHHHHHHHHHHHh
Q 003088 312 NNPILLGESGVGKTAIAEGLAIRI 335 (849)
Q Consensus 312 ~niLL~GppGtGKT~la~~la~~l 335 (849)
..++|.|+||+||||+++.|++.+
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 357999999999999999999987
No 305
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.41 E-value=0.0094 Score=59.15 Aligned_cols=23 Identities=39% Similarity=0.550 Sum_probs=21.5
Q ss_pred cceeecCCCCchHHHHHHHHHHh
Q 003088 661 AMLFCGPTGVGKTELAKSLAACY 683 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~l 683 (849)
.++|.|+||+|||++|+.|++.+
T Consensus 22 ~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999986
No 306
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.41 E-value=0.021 Score=64.47 Aligned_cols=28 Identities=29% Similarity=0.343 Sum_probs=23.8
Q ss_pred CCCCCeEeCCCCChHHHHHHHHHHHhhh
Q 003088 310 TKNNPILLGESGVGKTAIAEGLAIRIVQ 337 (849)
Q Consensus 310 ~~~niLL~GppGtGKT~la~~la~~l~~ 337 (849)
...-++|.|+||+|||+++..++..+..
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~ 229 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVAT 229 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4445799999999999999999998754
No 307
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.40 E-value=0.0064 Score=59.51 Aligned_cols=26 Identities=19% Similarity=0.243 Sum_probs=23.2
Q ss_pred CCCeEeCCCCChHHHHHHHHHHHhhh
Q 003088 312 NNPILLGESGVGKTAIAEGLAIRIVQ 337 (849)
Q Consensus 312 ~niLL~GppGtGKT~la~~la~~l~~ 337 (849)
..++|.|+||+||||+++.|++.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45899999999999999999998853
No 308
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.40 E-value=0.0073 Score=57.86 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=21.6
Q ss_pred CCeEeCCCCChHHHHHHHHHHHh
Q 003088 313 NPILLGESGVGKTAIAEGLAIRI 335 (849)
Q Consensus 313 niLL~GppGtGKT~la~~la~~l 335 (849)
.++|.|++|+||||+++.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999988
No 309
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=95.39 E-value=0.091 Score=60.27 Aligned_cols=38 Identities=21% Similarity=0.326 Sum_probs=28.5
Q ss_pred ccceeecCCCCchHHHHHHHHHHhcCC----CCceeEeeccc
Q 003088 660 AAMLFCGPTGVGKTELAKSLAACYFGS----ESSMLRLDMSE 697 (849)
Q Consensus 660 ~~lL~~Gp~GtGKt~lA~~la~~l~~~----~~~~i~i~~~~ 697 (849)
.|+|+.|.+|+|||.+.+.|...+... ...|+.+|...
T Consensus 215 pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpKg 256 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKM 256 (574)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSSS
T ss_pred CeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCCh
Confidence 479999999999999999876654222 34578888764
No 310
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.35 E-value=0.012 Score=57.96 Aligned_cols=23 Identities=35% Similarity=0.611 Sum_probs=21.3
Q ss_pred ceeecCCCCchHHHHHHHHHHhc
Q 003088 662 MLFCGPTGVGKTELAKSLAACYF 684 (849)
Q Consensus 662 lL~~Gp~GtGKt~lA~~la~~l~ 684 (849)
+.|.||+|+|||++.+.|+..+.
T Consensus 4 i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 4 VFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp EEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHHhhcc
Confidence 88999999999999999998874
No 311
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.34 E-value=0.037 Score=58.00 Aligned_cols=24 Identities=38% Similarity=0.393 Sum_probs=21.1
Q ss_pred cceeecCCCCchHHHHHHHHHHhc
Q 003088 661 AMLFCGPTGVGKTELAKSLAACYF 684 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~l~ 684 (849)
.++++||+|+|||+++..++..+.
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHh
Confidence 388999999999999999987653
No 312
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.34 E-value=0.036 Score=55.37 Aligned_cols=30 Identities=27% Similarity=0.263 Sum_probs=25.6
Q ss_pred hcCCCCCCeEeCCCCChHHHHHHHHHHHhh
Q 003088 307 CRRTKNNPILLGESGVGKTAIAEGLAIRIV 336 (849)
Q Consensus 307 ~~~~~~niLL~GppGtGKT~la~~la~~l~ 336 (849)
.......++|.|++|+||||+++.|+..+.
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 344556789999999999999999999885
No 313
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.33 E-value=0.007 Score=61.04 Aligned_cols=25 Identities=36% Similarity=0.476 Sum_probs=22.8
Q ss_pred CCCCeEeCCCCChHHHHHHHHHHHh
Q 003088 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (849)
Q Consensus 311 ~~niLL~GppGtGKT~la~~la~~l 335 (849)
...++|.|+||+||||+++.|++.+
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3468999999999999999999988
No 314
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.32 E-value=0.018 Score=58.14 Aligned_cols=23 Identities=39% Similarity=0.459 Sum_probs=20.7
Q ss_pred cceeecCCCCchHHHHHHHHHHh
Q 003088 661 AMLFCGPTGVGKTELAKSLAACY 683 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~l 683 (849)
.+.|.||+|+|||++++.|+..+
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 48899999999999999999754
No 315
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.32 E-value=0.0068 Score=61.53 Aligned_cols=25 Identities=16% Similarity=0.453 Sum_probs=22.8
Q ss_pred CCCCeEeCCCCChHHHHHHHHHHHh
Q 003088 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (849)
Q Consensus 311 ~~niLL~GppGtGKT~la~~la~~l 335 (849)
...++|.|+||+||||+++.|++.+
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3568999999999999999999987
No 316
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.31 E-value=0.12 Score=57.51 Aligned_cols=39 Identities=21% Similarity=0.252 Sum_probs=32.3
Q ss_pred ccceeecCCCCchHHHHHHHHHHhcCCCCceeEeecccc
Q 003088 660 AAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEY 698 (849)
Q Consensus 660 ~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~ 698 (849)
..++|+|++|+|||+++..||..+...+.....+++..+
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~ 139 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTW 139 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCS
T ss_pred eEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 458999999999999999999988766667777776644
No 317
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.29 E-value=0.015 Score=58.13 Aligned_cols=34 Identities=26% Similarity=0.278 Sum_probs=26.6
Q ss_pred cceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccc
Q 003088 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSE 697 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~ 697 (849)
.++++||||+|||++++.++. . .+.+.+.++...
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~-~--~~~~v~~i~~~~ 55 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL-L--SGKKVAYVDTEG 55 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH-H--HCSEEEEEESSC
T ss_pred EEEEECCCCCCHHHHHHHHHH-H--cCCcEEEEECCC
Confidence 388999999999999999997 2 244566676654
No 318
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.29 E-value=0.0083 Score=58.09 Aligned_cols=32 Identities=34% Similarity=0.524 Sum_probs=25.6
Q ss_pred ceeecCCCCchHHHHHHHHHHhcCCCCceeEeecccc
Q 003088 662 MLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEY 698 (849)
Q Consensus 662 lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~ 698 (849)
++|.|+||+|||++|+.|++.+ + +..++...+
T Consensus 7 i~i~G~~GsGKsTla~~La~~l---~--~~~~d~d~~ 38 (175)
T 1via_A 7 IVFIGFMGSGKSTLARALAKDL---D--LVFLDSDFL 38 (175)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH---T--CEEEEHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHc---C--CCEEcccHH
Confidence 8999999999999999999987 2 444555443
No 319
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.29 E-value=0.0088 Score=57.43 Aligned_cols=24 Identities=29% Similarity=0.497 Sum_probs=22.2
Q ss_pred ccceeecCCCCchHHHHHHHHHHh
Q 003088 660 AAMLFCGPTGVGKTELAKSLAACY 683 (849)
Q Consensus 660 ~~lL~~Gp~GtGKt~lA~~la~~l 683 (849)
.+++|.|++|||||++|+.|++.+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 359999999999999999999986
No 320
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.27 E-value=0.014 Score=60.11 Aligned_cols=26 Identities=27% Similarity=0.335 Sum_probs=23.3
Q ss_pred CCCCCeEeCCCCChHHHHHHHHHHHh
Q 003088 310 TKNNPILLGESGVGKTAIAEGLAIRI 335 (849)
Q Consensus 310 ~~~niLL~GppGtGKT~la~~la~~l 335 (849)
.+..++|.|+||+||||+++.|++.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 44568999999999999999999887
No 321
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.27 E-value=0.0076 Score=59.43 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=22.4
Q ss_pred CCCeEeCCCCChHHHHHHHHHHHh
Q 003088 312 NNPILLGESGVGKTAIAEGLAIRI 335 (849)
Q Consensus 312 ~niLL~GppGtGKT~la~~la~~l 335 (849)
..++|.|+||+||||+++.|++.+
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999988
No 322
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.26 E-value=0.01 Score=58.89 Aligned_cols=27 Identities=37% Similarity=0.581 Sum_probs=23.4
Q ss_pred CCCCCCeEeCCCCChHHHHHHHHHHHh
Q 003088 309 RTKNNPILLGESGVGKTAIAEGLAIRI 335 (849)
Q Consensus 309 ~~~~niLL~GppGtGKT~la~~la~~l 335 (849)
.....++|+||+|+||||+++.|+..+
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 345678999999999999999999887
No 323
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.25 E-value=0.017 Score=59.66 Aligned_cols=24 Identities=33% Similarity=0.320 Sum_probs=22.0
Q ss_pred CCCeEeCCCCChHHHHHHHHHHHh
Q 003088 312 NNPILLGESGVGKTAIAEGLAIRI 335 (849)
Q Consensus 312 ~niLL~GppGtGKT~la~~la~~l 335 (849)
..++|+|+||+||||+++.|+..+
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 457999999999999999999987
No 324
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=95.25 E-value=0.24 Score=48.69 Aligned_cols=25 Identities=28% Similarity=0.308 Sum_probs=18.8
Q ss_pred CCCCeEeCCCCChHHHHHH-HHHHHh
Q 003088 311 KNNPILLGESGVGKTAIAE-GLAIRI 335 (849)
Q Consensus 311 ~~niLL~GppGtGKT~la~-~la~~l 335 (849)
..++++.+|+|+|||..+- .+...+
T Consensus 38 ~~~~li~~~TGsGKT~~~~~~~~~~l 63 (207)
T 2gxq_A 38 GKDLIGQARTGTGKTLAFALPIAERL 63 (207)
T ss_dssp TCCEEEECCTTSCHHHHHHHHHHHHC
T ss_pred CCCEEEECCCCChHHHHHHHHHHHHH
Confidence 3689999999999998744 344444
No 325
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.25 E-value=0.034 Score=59.14 Aligned_cols=26 Identities=31% Similarity=0.360 Sum_probs=23.0
Q ss_pred CCCeEeCCCCChHHHHHHHHHHHhhh
Q 003088 312 NNPILLGESGVGKTAIAEGLAIRIVQ 337 (849)
Q Consensus 312 ~niLL~GppGtGKT~la~~la~~l~~ 337 (849)
.-++|+|++|+||||++..||..+..
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~~l~~ 130 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAKMFVD 130 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHHHHHh
Confidence 34689999999999999999998864
No 326
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.24 E-value=0.0069 Score=61.20 Aligned_cols=25 Identities=16% Similarity=0.215 Sum_probs=23.1
Q ss_pred CCCCeEeCCCCChHHHHHHHHHHHh
Q 003088 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (849)
Q Consensus 311 ~~niLL~GppGtGKT~la~~la~~l 335 (849)
...++|.|+||+||||+++.|++.+
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999999988
No 327
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.21 E-value=0.01 Score=58.00 Aligned_cols=37 Identities=14% Similarity=0.155 Sum_probs=27.2
Q ss_pred cceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccc
Q 003088 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSE 697 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~ 697 (849)
.++|.|+||+|||++++.|++.+...+.++..++.++
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~ 41 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGS 41 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHH
Confidence 3899999999999999999998743332244455443
No 328
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.21 E-value=0.0097 Score=64.26 Aligned_cols=41 Identities=32% Similarity=0.413 Sum_probs=29.9
Q ss_pred HHHHHHHHHHH----hcCCCCCCeEeCCCCChHHHHHHHHHHHhh
Q 003088 296 ETEIQRIIQIL----CRRTKNNPILLGESGVGKTAIAEGLAIRIV 336 (849)
Q Consensus 296 ~~~i~~l~~~l----~~~~~~niLL~GppGtGKT~la~~la~~l~ 336 (849)
+..++.++..+ ......+++|+|++|+||||+++.||..+.
T Consensus 5 ~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 5 HKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 33444444443 334456799999999999999999999873
No 329
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.20 E-value=0.0099 Score=57.44 Aligned_cols=24 Identities=38% Similarity=0.592 Sum_probs=21.9
Q ss_pred CCCeEeCCCCChHHHHHHHHHHHh
Q 003088 312 NNPILLGESGVGKTAIAEGLAIRI 335 (849)
Q Consensus 312 ~niLL~GppGtGKT~la~~la~~l 335 (849)
..++|+|++|+||||+++.|+..+
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhh
Confidence 457899999999999999999886
No 330
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.20 E-value=0.0086 Score=59.46 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=22.0
Q ss_pred CCCeEeCCCCChHHHHHHHHHHHh
Q 003088 312 NNPILLGESGVGKTAIAEGLAIRI 335 (849)
Q Consensus 312 ~niLL~GppGtGKT~la~~la~~l 335 (849)
..++|.|++|+||||+++.|++.+
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 457999999999999999999887
No 331
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.17 E-value=0.012 Score=57.61 Aligned_cols=28 Identities=36% Similarity=0.291 Sum_probs=24.2
Q ss_pred CCCCCeEeCCCCChHHHHHHHHHHHhhh
Q 003088 310 TKNNPILLGESGVGKTAIAEGLAIRIVQ 337 (849)
Q Consensus 310 ~~~niLL~GppGtGKT~la~~la~~l~~ 337 (849)
....++|.|++|+||||+++.|+..+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 3446799999999999999999999854
No 332
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.16 E-value=0.02 Score=60.48 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=21.7
Q ss_pred CCCeEeCCCCChHHHHHHHHHHHh
Q 003088 312 NNPILLGESGVGKTAIAEGLAIRI 335 (849)
Q Consensus 312 ~niLL~GppGtGKT~la~~la~~l 335 (849)
..++|.||||+||||+++.|+..+
T Consensus 34 ~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999999999999876
No 333
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.14 E-value=0.0089 Score=58.49 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=22.0
Q ss_pred CCCeEeCCCCChHHHHHHHHHHHh
Q 003088 312 NNPILLGESGVGKTAIAEGLAIRI 335 (849)
Q Consensus 312 ~niLL~GppGtGKT~la~~la~~l 335 (849)
..++|.|+||+||||+++.|++.+
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 357999999999999999999987
No 334
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.12 E-value=0.011 Score=57.77 Aligned_cols=32 Identities=25% Similarity=0.369 Sum_probs=25.6
Q ss_pred ceeecCCCCchHHHHHHHHHHhcCCCCceeEeecccc
Q 003088 662 MLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEY 698 (849)
Q Consensus 662 lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~ 698 (849)
++|.|+||+|||++|+.|++.+ + +..++...+
T Consensus 5 I~l~G~~GsGKsT~a~~La~~l---g--~~~id~D~~ 36 (184)
T 2iyv_A 5 AVLVGLPGSGKSTIGRRLAKAL---G--VGLLDTDVA 36 (184)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH---T--CCEEEHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHc---C--CCEEeCchH
Confidence 8999999999999999999986 3 334555444
No 335
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.05 E-value=0.014 Score=58.50 Aligned_cols=23 Identities=35% Similarity=0.433 Sum_probs=21.4
Q ss_pred CCeEeCCCCChHHHHHHHHHHHh
Q 003088 313 NPILLGESGVGKTAIAEGLAIRI 335 (849)
Q Consensus 313 niLL~GppGtGKT~la~~la~~l 335 (849)
.++|.||||+||+|.|+.|++.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999999987
No 336
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.05 E-value=0.1 Score=52.61 Aligned_cols=91 Identities=8% Similarity=-0.044 Sum_probs=47.4
Q ss_pred ceeecCCCCchHHHHHHHHHHhcCCCCceeEeecccccc--ccccccccCCCCCccccccCcchhHHHHhCCCeEEEEeC
Q 003088 662 MLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYME--RHTVSKLIGSPPGYVGYEEGGLLTEAIRRRPFTLLLLDE 739 (849)
Q Consensus 662 lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~--~~~~~~l~g~~~g~vg~~~~~~l~~~i~~~~~~vl~lDE 739 (849)
.+++|+.|+|||+.+-..+......+...+.+....-.. ....+.+ |-.....+......+.+.+ .+..+|+|||
T Consensus 22 ~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~Ryg~~i~sr~-G~~~~a~~i~~~~di~~~~--~~~dvViIDE 98 (234)
T 2orv_A 22 QVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHD-RNTMEALPACLLRDVAQEA--LGVAVIGIDE 98 (234)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCCC------------CEEEEESSGGGGHHHH--TTCSEEEESS
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCccchHHHHhhc-CCeeEEEecCCHHHHHHHh--ccCCEEEEEc
Confidence 567899999999776655555545555555554221100 1111121 2111111111112233333 3456999999
Q ss_pred ccccCHHHHHHHHHHhhc
Q 003088 740 IEKAHPDIFNILLQVFED 757 (849)
Q Consensus 740 id~l~~~~~~~Ll~~le~ 757 (849)
+.-+.. ...+.+.+++
T Consensus 99 aQF~~~--v~el~~~l~~ 114 (234)
T 2orv_A 99 GQFFPD--IVEFCEAMAN 114 (234)
T ss_dssp GGGCTT--HHHHHHHHHH
T ss_pred hhhhhh--HHHHHHHHHh
Confidence 999975 6666677765
No 337
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.05 E-value=0.013 Score=60.69 Aligned_cols=31 Identities=35% Similarity=0.446 Sum_probs=24.9
Q ss_pred ceeecCCCCchHHHHHHHHHHhcCCCCceeEeec
Q 003088 662 MLFCGPTGVGKTELAKSLAACYFGSESSMLRLDM 695 (849)
Q Consensus 662 lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~ 695 (849)
+++.||||+|||++|+.|++.+ +.+++..|.
T Consensus 4 i~I~G~~GSGKSTla~~La~~~---~~~~i~~D~ 34 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAIQIAQET---GWPVVALDR 34 (253)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH---CCCEEECCS
T ss_pred EEEECCCCcCHHHHHHHHHhcC---CCeEEeccH
Confidence 7899999999999999999986 344554443
No 338
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.02 E-value=0.011 Score=57.39 Aligned_cols=23 Identities=48% Similarity=0.687 Sum_probs=21.6
Q ss_pred cceeecCCCCchHHHHHHHHHHh
Q 003088 661 AMLFCGPTGVGKTELAKSLAACY 683 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~l 683 (849)
.++|+|+||+|||++++.|++.+
T Consensus 13 ~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 13 NILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999986
No 339
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=95.01 E-value=0.035 Score=55.16 Aligned_cols=38 Identities=26% Similarity=0.211 Sum_probs=27.1
Q ss_pred cHHHHHHHHHHHhcCCCCCCeEeCCCCChHHHHHHHHHHHh
Q 003088 295 RETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRI 335 (849)
Q Consensus 295 ~~~~i~~l~~~l~~~~~~niLL~GppGtGKT~la~~la~~l 335 (849)
++.+.+.+..++. ..++++.+|+|+|||.++..++...
T Consensus 35 ~~~Q~~~i~~~~~---~~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 35 RPYQMEVAQPALE---GKNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CHHHHHHHHHHHT---TCCEEEECSCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhc---CCCEEEEcCCCCCHHHHHHHHHHHH
Confidence 3444444444442 3689999999999999998877654
No 340
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.99 E-value=0.0096 Score=57.57 Aligned_cols=21 Identities=24% Similarity=0.335 Sum_probs=19.6
Q ss_pred CCeEeCCCCChHHHHHHHHHH
Q 003088 313 NPILLGESGVGKTAIAEGLAI 333 (849)
Q Consensus 313 niLL~GppGtGKT~la~~la~ 333 (849)
.++|.|+||+||||+++.|++
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 478999999999999999998
No 341
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.99 E-value=0.033 Score=56.84 Aligned_cols=25 Identities=28% Similarity=0.480 Sum_probs=20.9
Q ss_pred CCCCCeEeCCCCChHHHHHHHHHHH
Q 003088 310 TKNNPILLGESGVGKTAIAEGLAIR 334 (849)
Q Consensus 310 ~~~niLL~GppGtGKT~la~~la~~ 334 (849)
...-++|+|+||+|||++|..+|..
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 3456799999999999999987765
No 342
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.98 E-value=0.0089 Score=60.05 Aligned_cols=23 Identities=30% Similarity=0.309 Sum_probs=21.5
Q ss_pred CCeEeCCCCChHHHHHHHHHHHh
Q 003088 313 NPILLGESGVGKTAIAEGLAIRI 335 (849)
Q Consensus 313 niLL~GppGtGKT~la~~la~~l 335 (849)
+++|.|+||+||||+++.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999987
No 343
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.90 E-value=0.015 Score=60.00 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=23.6
Q ss_pred CCCCeEeCCCCChHHHHHHHHHHHh
Q 003088 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (849)
Q Consensus 311 ~~niLL~GppGtGKT~la~~la~~l 335 (849)
..+++|+|++|+||||+++.|+..+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5689999999999999999999988
No 344
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.88 E-value=0.042 Score=59.06 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=21.6
Q ss_pred CCeEeCCCCChHHHHHHHHHHHh
Q 003088 313 NPILLGESGVGKTAIAEGLAIRI 335 (849)
Q Consensus 313 niLL~GppGtGKT~la~~la~~l 335 (849)
.++|.||+|+|||+++..||..+
T Consensus 9 lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCcCcHHHHHHHHHHHc
Confidence 57899999999999999999988
No 345
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.88 E-value=0.082 Score=56.48 Aligned_cols=29 Identities=24% Similarity=0.282 Sum_probs=23.7
Q ss_pred CCCCCeEeCCCCChHHHHHHHHHHHhhhC
Q 003088 310 TKNNPILLGESGVGKTAIAEGLAIRIVQA 338 (849)
Q Consensus 310 ~~~niLL~GppGtGKT~la~~la~~l~~~ 338 (849)
...-++|.|+||+|||+++..+|..+...
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~ 95 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDN 95 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 33457999999999999999999876543
No 346
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.87 E-value=0.031 Score=59.93 Aligned_cols=26 Identities=23% Similarity=0.345 Sum_probs=22.3
Q ss_pred CCCCCeEeCCCCChHHHHHHHHHHHh
Q 003088 310 TKNNPILLGESGVGKTAIAEGLAIRI 335 (849)
Q Consensus 310 ~~~niLL~GppGtGKT~la~~la~~l 335 (849)
...-++|+|+||+|||+++..++...
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34567999999999999999999764
No 347
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.87 E-value=0.013 Score=58.36 Aligned_cols=26 Identities=23% Similarity=0.346 Sum_probs=22.9
Q ss_pred CCCCCeEeCCCCChHHHHHHHHHHHh
Q 003088 310 TKNNPILLGESGVGKTAIAEGLAIRI 335 (849)
Q Consensus 310 ~~~niLL~GppGtGKT~la~~la~~l 335 (849)
....++|+||||+||||+++.|+..+
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34567999999999999999999887
No 348
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.85 E-value=0.019 Score=56.19 Aligned_cols=25 Identities=32% Similarity=0.268 Sum_probs=22.4
Q ss_pred CeEeCCCCChHHHHHHHHHHHhhhC
Q 003088 314 PILLGESGVGKTAIAEGLAIRIVQA 338 (849)
Q Consensus 314 iLL~GppGtGKT~la~~la~~l~~~ 338 (849)
++|.|++|+||||+++.|++.+...
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~ 27 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYLKQK 27 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC
Confidence 6899999999999999999988543
No 349
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=94.84 E-value=0.019 Score=56.60 Aligned_cols=24 Identities=17% Similarity=0.246 Sum_probs=20.2
Q ss_pred CeEeCCCCChHH-HHHHHHHHHhhh
Q 003088 314 PILLGESGVGKT-AIAEGLAIRIVQ 337 (849)
Q Consensus 314 iLL~GppGtGKT-~la~~la~~l~~ 337 (849)
.+++||.|+||| .|.+++.+....
T Consensus 23 ~fiyG~MgsGKTt~Ll~~i~n~~~~ 47 (195)
T 1w4r_A 23 QVILGPMFSGKSTELMRRVRRFQIA 47 (195)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHc
Confidence 488999999999 888888877654
No 350
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=94.84 E-value=0.37 Score=48.08 Aligned_cols=25 Identities=28% Similarity=0.316 Sum_probs=18.6
Q ss_pred CCCCeEeCCCCChHHHHH-HHHHHHh
Q 003088 311 KNNPILLGESGVGKTAIA-EGLAIRI 335 (849)
Q Consensus 311 ~~niLL~GppGtGKT~la-~~la~~l 335 (849)
..++++.+|+|+|||..+ -.+...+
T Consensus 51 ~~~~lv~~pTGsGKT~~~~~~~l~~l 76 (224)
T 1qde_A 51 GHDVLAQAQSGTGKTGTFSIAALQRI 76 (224)
T ss_dssp TCCEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEECCCCCcHHHHHHHHHHHHH
Confidence 368999999999999873 3444444
No 351
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=94.82 E-value=0.074 Score=54.17 Aligned_cols=24 Identities=29% Similarity=0.526 Sum_probs=21.1
Q ss_pred CCCCeEeCCCCChHHHHHHHHHHH
Q 003088 311 KNNPILLGESGVGKTAIAEGLAIR 334 (849)
Q Consensus 311 ~~niLL~GppGtGKT~la~~la~~ 334 (849)
..+++|+|++|+|||+++..|...
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTS
T ss_pred ceEEEEECCCCCCHHHHHHHHcCC
Confidence 457899999999999999998864
No 352
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.81 E-value=0.014 Score=57.24 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=21.4
Q ss_pred cceeecCCCCchHHHHHHHHHHh
Q 003088 661 AMLFCGPTGVGKTELAKSLAACY 683 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~l 683 (849)
.++|.|+||+|||++|+.|++.+
T Consensus 7 ~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 7 LIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 38899999999999999999986
No 353
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.81 E-value=0.024 Score=54.62 Aligned_cols=35 Identities=23% Similarity=0.245 Sum_probs=27.4
Q ss_pred ccceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccc
Q 003088 660 AAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYM 699 (849)
Q Consensus 660 ~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~ 699 (849)
..++|.|++|+|||++++.|+..+ + .+.++...+.
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~---g--~~~i~~d~~~ 43 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQL---H--AAFLDGDFLH 43 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH---T--CEEEEGGGGC
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhh---C--cEEEeCcccc
Confidence 358899999999999999999876 2 4566665543
No 354
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.80 E-value=0.059 Score=57.09 Aligned_cols=28 Identities=29% Similarity=0.383 Sum_probs=24.3
Q ss_pred CCCCCeEeCCCCChHHHHHHHHHHHhhh
Q 003088 310 TKNNPILLGESGVGKTAIAEGLAIRIVQ 337 (849)
Q Consensus 310 ~~~niLL~GppGtGKT~la~~la~~l~~ 337 (849)
.+..++|+|++|+||||++..||..+..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~ 131 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISML 131 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3456899999999999999999998863
No 355
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.80 E-value=0.015 Score=58.66 Aligned_cols=23 Identities=35% Similarity=0.635 Sum_probs=21.6
Q ss_pred cceeecCCCCchHHHHHHHHHHh
Q 003088 661 AMLFCGPTGVGKTELAKSLAACY 683 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~l 683 (849)
.++|.|+||+|||++|+.|++.+
T Consensus 6 ~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 6 RMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999987
No 356
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.76 E-value=0.032 Score=62.81 Aligned_cols=27 Identities=26% Similarity=0.254 Sum_probs=23.1
Q ss_pred CCCCeEeCCCCChHHHHHHHHHHHhhh
Q 003088 311 KNNPILLGESGVGKTAIAEGLAIRIVQ 337 (849)
Q Consensus 311 ~~niLL~GppGtGKT~la~~la~~l~~ 337 (849)
..-++|.|+||+|||+++..+|..+..
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~ 226 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAAL 226 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 345689999999999999999988764
No 357
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.76 E-value=0.0097 Score=58.33 Aligned_cols=26 Identities=42% Similarity=0.455 Sum_probs=22.0
Q ss_pred CCCCCeEeCCCCChHHHHHHHHHHHh
Q 003088 310 TKNNPILLGESGVGKTAIAEGLAIRI 335 (849)
Q Consensus 310 ~~~niLL~GppGtGKT~la~~la~~l 335 (849)
....++|+||+|+||||+++.|+...
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcc
Confidence 34467999999999999999998753
No 358
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.76 E-value=0.04 Score=60.46 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=21.4
Q ss_pred CCeEeCCCCChHHHHHHHHHHHh
Q 003088 313 NPILLGESGVGKTAIAEGLAIRI 335 (849)
Q Consensus 313 niLL~GppGtGKT~la~~la~~l 335 (849)
-++|.||+|+|||+++..||..+
T Consensus 4 ~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHH
T ss_pred EEEEECcchhhHHHHHHHHHHHC
Confidence 46899999999999999999988
No 359
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.76 E-value=0.014 Score=56.21 Aligned_cols=33 Identities=27% Similarity=0.503 Sum_probs=25.8
Q ss_pred cceeecCCCCchHHHHHHHHHHhcCCCCceeEeecccc
Q 003088 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEY 698 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~ 698 (849)
.+.|.||+|+|||++++.|+..+ + ++.+|...+
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~l---~--~~~id~d~~ 38 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQL---N--MEFYDSDQE 38 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT---T--CEEEEHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh---C--CCEEeccHH
Confidence 38999999999999999999986 2 345555433
No 360
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.75 E-value=0.014 Score=56.05 Aligned_cols=22 Identities=27% Similarity=0.584 Sum_probs=21.1
Q ss_pred ceeecCCCCchHHHHHHHHHHh
Q 003088 662 MLFCGPTGVGKTELAKSLAACY 683 (849)
Q Consensus 662 lL~~Gp~GtGKt~lA~~la~~l 683 (849)
++|.|++|+|||++|+.|++.+
T Consensus 5 I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 5 IFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999999986
No 361
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.70 E-value=0.08 Score=57.59 Aligned_cols=29 Identities=24% Similarity=0.471 Sum_probs=24.4
Q ss_pred CCCCCeEeCCCCChHHHHHHHHHHHhhhC
Q 003088 310 TKNNPILLGESGVGKTAIAEGLAIRIVQA 338 (849)
Q Consensus 310 ~~~niLL~GppGtGKT~la~~la~~l~~~ 338 (849)
....+.|+|+||+||||++..|+..+...
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~ 106 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIER 106 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 34467999999999999999999887543
No 362
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.69 E-value=0.016 Score=58.72 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=21.4
Q ss_pred CCeEeCCCCChHHHHHHHHHHHh
Q 003088 313 NPILLGESGVGKTAIAEGLAIRI 335 (849)
Q Consensus 313 niLL~GppGtGKT~la~~la~~l 335 (849)
.++|.|+||+||||+++.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999988
No 363
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.68 E-value=0.015 Score=58.18 Aligned_cols=34 Identities=29% Similarity=0.560 Sum_probs=28.5
Q ss_pred ceeecCCCCchHHHHHHHHHHhcCCCCceeEeecccccc
Q 003088 662 MLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYME 700 (849)
Q Consensus 662 lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~ 700 (849)
++|.||||+||++.|+.|++.+ .+.+++..++..
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~-----g~~~istGdllR 36 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEK-----GFVHISTGDILR 36 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH-----CCEEEEHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH-----CCeEEcHHHHHH
Confidence 7899999999999999999986 377777766553
No 364
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.66 E-value=0.015 Score=57.05 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=21.5
Q ss_pred CCCeEeCCCCChHHHHHHHHHHHh
Q 003088 312 NNPILLGESGVGKTAIAEGLAIRI 335 (849)
Q Consensus 312 ~niLL~GppGtGKT~la~~la~~l 335 (849)
+.|+|+||+|+|||||++.|....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 358999999999999999998775
No 365
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.65 E-value=0.015 Score=58.55 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=21.5
Q ss_pred CCCeEeCCCCChHHHHHHHHHHHh
Q 003088 312 NNPILLGESGVGKTAIAEGLAIRI 335 (849)
Q Consensus 312 ~niLL~GppGtGKT~la~~la~~l 335 (849)
.-++|.||||+||+|.|+.|++.+
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 346789999999999999999987
No 366
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.64 E-value=0.021 Score=63.89 Aligned_cols=27 Identities=33% Similarity=0.454 Sum_probs=23.2
Q ss_pred CCCCCeEeCCCCChHHHHHHHHHHHhh
Q 003088 310 TKNNPILLGESGVGKTAIAEGLAIRIV 336 (849)
Q Consensus 310 ~~~niLL~GppGtGKT~la~~la~~l~ 336 (849)
+...++|+|++|+|||+|+..++..+.
T Consensus 150 kGq~~~i~G~sGvGKTtL~~~l~~~~~ 176 (473)
T 1sky_E 150 KGGKIGLFGGAGVGKTVLIQELIHNIA 176 (473)
T ss_dssp TTCEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCccHHHHHHHhhhh
Confidence 445689999999999999999988764
No 367
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=94.64 E-value=0.032 Score=56.72 Aligned_cols=37 Identities=22% Similarity=0.258 Sum_probs=27.8
Q ss_pred cceeecCCCCchHHHHHHHHHHhcC------CCCceeEeeccc
Q 003088 661 AMLFCGPTGVGKTELAKSLAACYFG------SESSMLRLDMSE 697 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~l~~------~~~~~i~i~~~~ 697 (849)
.++|+||+|+|||++++.++..... .....+.++...
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred EEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 3889999999999999999985311 134567777654
No 368
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.63 E-value=0.027 Score=59.71 Aligned_cols=77 Identities=18% Similarity=0.210 Sum_probs=44.2
Q ss_pred CCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeeh----------------hhhhccccccchHHHHHHHHHH
Q 003088 313 NPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM----------------GLLMAGAKERGELEARVTTLIS 376 (849)
Q Consensus 313 niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~----------------~~~~~~~~~~g~~e~~l~~l~~ 376 (849)
-++|+||||+|||+++..++....... .+..++.+|. ..+.... ....++..-.+.+
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g-----~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~--~~~~E~~~l~i~~ 102 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQY-----PDAVCLFYDSEFGITPAYLRSMGVDPERVIHTP--VQSLEQLRIDMVN 102 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHC-----TTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEE--CSBHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcC-----CCceEEEEeccchhhHHHHHHhCCCHHHeEEEc--CCCHHHHHHHHHH
Confidence 479999999999999988877765320 0122222321 1111111 1123333022333
Q ss_pred H---HHhcCCeEEEEcCcchhhh
Q 003088 377 E---IQKSGDVILFIDEVHTLIG 396 (849)
Q Consensus 377 ~---~~~~~~~ILfIDEi~~l~~ 396 (849)
. ++...+.+++||=+..|++
T Consensus 103 ~l~~i~~~~~~lvVIDSI~aL~~ 125 (333)
T 3io5_A 103 QLDAIERGEKVVVFIDSLGNLAS 125 (333)
T ss_dssp HHHTCCTTCCEEEEEECSTTCBC
T ss_pred HHHHhhccCceEEEEeccccccc
Confidence 3 3556789999999999975
No 369
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.63 E-value=0.016 Score=56.62 Aligned_cols=36 Identities=31% Similarity=0.534 Sum_probs=28.3
Q ss_pred cceeecCCCCchHHHHHHHHHHhcCCCCceeEeecccccc
Q 003088 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYME 700 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~ 700 (849)
.++|+|++|||||++++.|++.+++ +..+|+..+..
T Consensus 12 ~I~l~G~~GsGKSTv~~~La~~l~g----~~~id~d~~~~ 47 (184)
T 1y63_A 12 NILITGTPGTGKTSMAEMIAAELDG----FQHLEVGKLVK 47 (184)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSTT----EEEEEHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCC----CEEeeHHHHHH
Confidence 4999999999999999999998322 56667665544
No 370
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.62 E-value=0.014 Score=55.78 Aligned_cols=21 Identities=43% Similarity=0.573 Sum_probs=19.0
Q ss_pred ceeecCCCCchHHHHHHHHHHh
Q 003088 662 MLFCGPTGVGKTELAKSLAACY 683 (849)
Q Consensus 662 lL~~Gp~GtGKt~lA~~la~~l 683 (849)
++|.|+||+|||++|+.| +.+
T Consensus 4 I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 4 ILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp EEEECCTTSCHHHHHHHH-HHT
T ss_pred EEEECCCCCCHHHHHHHH-HHC
Confidence 889999999999999999 553
No 371
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.61 E-value=0.019 Score=56.87 Aligned_cols=33 Identities=15% Similarity=0.343 Sum_probs=26.3
Q ss_pred cceeecCCCCchHHHHHHHHHHhcCCCCceeEeecccc
Q 003088 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEY 698 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~ 698 (849)
.++|.|++|+|||++|+.|++.+ + +..++...+
T Consensus 20 ~I~l~G~~GsGKSTla~~L~~~l---g--~~~i~~d~~ 52 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVGEAIAEAC---G--YPFIEGDAL 52 (202)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHH---T--CCEEEGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---C--CEEEeCCcC
Confidence 38999999999999999999987 2 445555544
No 372
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.57 E-value=0.018 Score=55.04 Aligned_cols=22 Identities=18% Similarity=0.285 Sum_probs=21.0
Q ss_pred ceeecCCCCchHHHHHHHHHHh
Q 003088 662 MLFCGPTGVGKTELAKSLAACY 683 (849)
Q Consensus 662 lL~~Gp~GtGKt~lA~~la~~l 683 (849)
++|.|++|+|||++|+.|++.+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 3 IYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEESCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8899999999999999999976
No 373
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=94.56 E-value=0.4 Score=49.49 Aligned_cols=19 Identities=21% Similarity=0.179 Sum_probs=16.5
Q ss_pred CCCeEeCCCCChHHHHHHH
Q 003088 312 NNPILLGESGVGKTAIAEG 330 (849)
Q Consensus 312 ~niLL~GppGtGKT~la~~ 330 (849)
.++++.+|+|+|||..+..
T Consensus 92 ~~~lv~a~TGsGKT~~~~l 110 (262)
T 3ly5_A 92 RDLLAAAKTGSGKTLAFLI 110 (262)
T ss_dssp CCCEECCCTTSCHHHHHHH
T ss_pred CcEEEEccCCCCchHHHHH
Confidence 6799999999999987554
No 374
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=94.54 E-value=0.085 Score=60.79 Aligned_cols=59 Identities=20% Similarity=0.231 Sum_probs=40.1
Q ss_pred hhhHHHHhhcCCC-CccccHHHHHHHHHHH--hcCCCCCCeEeCCCCChHHHHHHHHHHHhh
Q 003088 278 VDLTARASEELID-PVIGRETEIQRIIQIL--CRRTKNNPILLGESGVGKTAIAEGLAIRIV 336 (849)
Q Consensus 278 ~~l~~~~~~~~l~-~iiG~~~~i~~l~~~l--~~~~~~niLL~GppGtGKT~la~~la~~l~ 336 (849)
..+.+.++.+..- ....+.+..+.+.... .......+.|+|++|+||||++++|+..+.
T Consensus 333 t~ir~~Lr~G~~~p~~f~~peV~~vLR~~~~~~~~~G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 333 EEFQRRMRAGLKIPEWYSFPEVLAELHRQTPPRERQGFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp HHHHHHHTTTCCCCTTTSCHHHHHHHHHHSCCGGGSCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCccccccchhhhhhhhcccccccceEEEEECCCCChHHHHHHHHHHhhc
Confidence 3455566666533 3455555555554443 223456789999999999999999999985
No 375
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.54 E-value=0.015 Score=57.74 Aligned_cols=25 Identities=28% Similarity=0.126 Sum_probs=22.5
Q ss_pred CCCeEeCCCCChHHHHHHHHHHHhh
Q 003088 312 NNPILLGESGVGKTAIAEGLAIRIV 336 (849)
Q Consensus 312 ~niLL~GppGtGKT~la~~la~~l~ 336 (849)
..++|.|+||+||||+++.|++.+.
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 3578999999999999999999884
No 376
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.51 E-value=0.017 Score=60.08 Aligned_cols=38 Identities=24% Similarity=0.370 Sum_probs=28.4
Q ss_pred cceeecCCCCchHHHHHHHHHHhcCCCCceeEeecccc
Q 003088 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEY 698 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~ 698 (849)
.++|+|+||+|||++|+.|++.+...+.+++.++...+
T Consensus 6 lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~ 43 (260)
T 3a4m_A 6 LIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLI 43 (260)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHH
Confidence 38999999999999999999985333445665555433
No 377
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=94.49 E-value=0.041 Score=64.31 Aligned_cols=23 Identities=30% Similarity=0.254 Sum_probs=19.7
Q ss_pred cceeecCCCCchHHHHHHHHHHh
Q 003088 661 AMLFCGPTGVGKTELAKSLAACY 683 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~l 683 (849)
++++++|+|+|||.+|-.++..+
T Consensus 200 ~~ll~~~TGsGKT~~~~~~~~~l 222 (590)
T 3h1t_A 200 RSLITMATGTGKTVVAFQISWKL 222 (590)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred ceEEEecCCCChHHHHHHHHHHH
Confidence 38999999999999987777665
No 378
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.49 E-value=0.019 Score=57.01 Aligned_cols=38 Identities=24% Similarity=0.308 Sum_probs=28.0
Q ss_pred cceeecCCCCchHHHHHHHHHHhcCCCCceeEeecccc
Q 003088 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEY 698 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~ 698 (849)
.+.|.||+|+|||++++.|+..+...+...+.++...+
T Consensus 27 ~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 27 VIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 48899999999999999999987522322346665444
No 379
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.48 E-value=0.016 Score=57.20 Aligned_cols=23 Identities=22% Similarity=0.550 Sum_probs=21.5
Q ss_pred CCeEeCCCCChHHHHHHHHHHHh
Q 003088 313 NPILLGESGVGKTAIAEGLAIRI 335 (849)
Q Consensus 313 niLL~GppGtGKT~la~~la~~l 335 (849)
.++|.|++|+||||+++.|++.+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 47899999999999999999988
No 380
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=94.48 E-value=0.19 Score=51.13 Aligned_cols=19 Identities=21% Similarity=0.116 Sum_probs=16.4
Q ss_pred CCCeEeCCCCChHHHHHHH
Q 003088 312 NNPILLGESGVGKTAIAEG 330 (849)
Q Consensus 312 ~niLL~GppGtGKT~la~~ 330 (849)
.++++.+|+|+|||.....
T Consensus 67 ~~~l~~apTGsGKT~~~~l 85 (242)
T 3fe2_A 67 LDMVGVAQTGSGKTLSYLL 85 (242)
T ss_dssp CCEEEEECTTSCHHHHHHH
T ss_pred CCEEEECCCcCHHHHHHHH
Confidence 5899999999999987543
No 381
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.45 E-value=0.02 Score=56.15 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=21.4
Q ss_pred cceeecCCCCchHHHHHHHHHHh
Q 003088 661 AMLFCGPTGVGKTELAKSLAACY 683 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~l 683 (849)
.++|.|+||+|||++|+.|++.+
T Consensus 11 ~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 11 IIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999999886
No 382
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.45 E-value=0.018 Score=56.30 Aligned_cols=33 Identities=21% Similarity=0.355 Sum_probs=25.8
Q ss_pred cceeecCCCCchHHHHHHHHHHhcCCCCceeEeecccc
Q 003088 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEY 698 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~ 698 (849)
.++|.|+||+|||++|+.|++.+ + +..++...+
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~~~~---~--~~~i~~d~~ 37 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIVEKY---G--YTHLSAGEL 37 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH---C--CEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---C--CeEEeHHHH
Confidence 38899999999999999999876 2 344555444
No 383
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.45 E-value=0.016 Score=56.44 Aligned_cols=24 Identities=33% Similarity=0.574 Sum_probs=21.5
Q ss_pred CCCeEeCCCCChHHHHHHHHHHHh
Q 003088 312 NNPILLGESGVGKTAIAEGLAIRI 335 (849)
Q Consensus 312 ~niLL~GppGtGKT~la~~la~~l 335 (849)
.-++|+||+|+||||+++.|+...
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 357899999999999999999876
No 384
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.45 E-value=0.032 Score=60.11 Aligned_cols=27 Identities=30% Similarity=0.368 Sum_probs=23.8
Q ss_pred CCCCCeEeCCCCChHHHHHHHHHHHhh
Q 003088 310 TKNNPILLGESGVGKTAIAEGLAIRIV 336 (849)
Q Consensus 310 ~~~niLL~GppGtGKT~la~~la~~l~ 336 (849)
...+++|+||+|+||||++++|+..+.
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 456899999999999999999998763
No 385
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.42 E-value=0.021 Score=56.10 Aligned_cols=25 Identities=24% Similarity=0.228 Sum_probs=22.5
Q ss_pred CeEeCCCCChHHHHHHHHHHHhhhC
Q 003088 314 PILLGESGVGKTAIAEGLAIRIVQA 338 (849)
Q Consensus 314 iLL~GppGtGKT~la~~la~~l~~~ 338 (849)
++|.|++|+||||+++.|++.+...
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~ 27 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKR 27 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC
Confidence 6899999999999999999998654
No 386
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.39 E-value=0.017 Score=56.22 Aligned_cols=32 Identities=34% Similarity=0.565 Sum_probs=25.3
Q ss_pred cceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccc
Q 003088 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSE 697 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~ 697 (849)
.++|.|+||+|||++|+.|++.+ + +..++...
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l---~--~~~i~~d~ 37 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQEL---G--FKKLSTGD 37 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH---T--CEEECHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---C--CeEecHHH
Confidence 38899999999999999999876 2 44555543
No 387
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.38 E-value=0.047 Score=54.15 Aligned_cols=43 Identities=19% Similarity=0.135 Sum_probs=31.0
Q ss_pred cHHHHHHHHHHHhcC---CCCCCeEeCCCCChHHHHHHHHHHHhhh
Q 003088 295 RETEIQRIIQILCRR---TKNNPILLGESGVGKTAIAEGLAIRIVQ 337 (849)
Q Consensus 295 ~~~~i~~l~~~l~~~---~~~niLL~GppGtGKT~la~~la~~l~~ 337 (849)
+++.++.+.+.+... ...-+.|+|++|+||||+++.|+..+..
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~ 48 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLRE 48 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 345566666655432 2234689999999999999999998753
No 388
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.36 E-value=0.026 Score=54.75 Aligned_cols=27 Identities=33% Similarity=0.351 Sum_probs=23.4
Q ss_pred CCCCeEeCCCCChHHHHHHHHHHHhhh
Q 003088 311 KNNPILLGESGVGKTAIAEGLAIRIVQ 337 (849)
Q Consensus 311 ~~niLL~GppGtGKT~la~~la~~l~~ 337 (849)
...++|+|++|+||||+++.|+..+..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 345789999999999999999998754
No 389
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.35 E-value=0.021 Score=57.18 Aligned_cols=22 Identities=27% Similarity=0.520 Sum_probs=20.8
Q ss_pred ceeecCCCCchHHHHHHHHHHh
Q 003088 662 MLFCGPTGVGKTELAKSLAACY 683 (849)
Q Consensus 662 lL~~Gp~GtGKt~lA~~la~~l 683 (849)
++|.|+||+|||++|+.|++.+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999886
No 390
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.35 E-value=0.022 Score=55.66 Aligned_cols=38 Identities=26% Similarity=0.212 Sum_probs=29.3
Q ss_pred cceeecCCCCchHHHHHHHHHHhcCCCCceeEeecccc
Q 003088 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEY 698 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~ 698 (849)
.++|.|++|+|||++++.|+..+...+.+++.++...+
T Consensus 15 ~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~ 52 (186)
T 2yvu_A 15 VVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWA 52 (186)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHH
Confidence 48899999999999999999987544455566665433
No 391
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.33 E-value=0.074 Score=60.49 Aligned_cols=27 Identities=30% Similarity=0.367 Sum_probs=23.7
Q ss_pred CCCeEeCCCCChHHHHHHHHHHHhhhC
Q 003088 312 NNPILLGESGVGKTAIAEGLAIRIVQA 338 (849)
Q Consensus 312 ~niLL~GppGtGKT~la~~la~~l~~~ 338 (849)
..++|+|++|+||||++..||..+...
T Consensus 102 ~vI~ivG~~GvGKTTl~~kLA~~l~~~ 128 (504)
T 2j37_W 102 NVIMFVGLQGSGKTTTCSKLAYYYQRK 128 (504)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 467899999999999999999988653
No 392
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.32 E-value=0.019 Score=57.51 Aligned_cols=32 Identities=16% Similarity=0.405 Sum_probs=25.3
Q ss_pred ceeecCCCCchHHHHHHHHHHhcCCCCceeEeecccc
Q 003088 662 MLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEY 698 (849)
Q Consensus 662 lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~ 698 (849)
++|.|+||+|||++|+.|++.+ + +..++...+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~---~--~~~i~~d~~ 34 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKY---G--IPHISTGDM 34 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHS---S--CCEEEHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh---C--CcEEeHHHH
Confidence 8899999999999999999875 2 445555443
No 393
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.29 E-value=0.26 Score=53.63 Aligned_cols=36 Identities=14% Similarity=0.257 Sum_probs=28.7
Q ss_pred HHHHH-hcCCCCCCeEeCCCCChHHHHHHHHHHHhhh
Q 003088 302 IIQIL-CRRTKNNPILLGESGVGKTAIAEGLAIRIVQ 337 (849)
Q Consensus 302 l~~~l-~~~~~~niLL~GppGtGKT~la~~la~~l~~ 337 (849)
+++++ .-.+...++|+||+|+|||+++..|++.+..
T Consensus 164 aID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~ 200 (422)
T 3ice_A 164 VLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAY 200 (422)
T ss_dssp HHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHH
T ss_pred eeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhh
Confidence 33433 4456678999999999999999999998764
No 394
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.28 E-value=0.022 Score=57.41 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=22.0
Q ss_pred CCCeEeCCCCChHHHHHHHHHHHh
Q 003088 312 NNPILLGESGVGKTAIAEGLAIRI 335 (849)
Q Consensus 312 ~niLL~GppGtGKT~la~~la~~l 335 (849)
..+.|+||+|+||||+++.|++.+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999999999987
No 395
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.28 E-value=0.019 Score=55.74 Aligned_cols=23 Identities=39% Similarity=0.567 Sum_probs=17.3
Q ss_pred cceeecCCCCchHHHHHHHHHHh
Q 003088 661 AMLFCGPTGVGKTELAKSLAACY 683 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~l 683 (849)
.++|.|+||+|||++|+.|++.+
T Consensus 7 ~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 7 IIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp EEEEECCC----CHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 38899999999999999999886
No 396
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.27 E-value=0.021 Score=56.90 Aligned_cols=27 Identities=19% Similarity=0.192 Sum_probs=23.8
Q ss_pred CCCCeEeCCCCChHHHHHHHHHHHhhh
Q 003088 311 KNNPILLGESGVGKTAIAEGLAIRIVQ 337 (849)
Q Consensus 311 ~~niLL~GppGtGKT~la~~la~~l~~ 337 (849)
+..++|.|++|+||||+++.|++.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 456899999999999999999998854
No 397
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.27 E-value=0.018 Score=57.07 Aligned_cols=22 Identities=27% Similarity=0.385 Sum_probs=20.4
Q ss_pred CCeEeCCCCChHHHHHHHHHHHh
Q 003088 313 NPILLGESGVGKTAIAEGLAIRI 335 (849)
Q Consensus 313 niLL~GppGtGKT~la~~la~~l 335 (849)
.+.|+|++|+||||+++.|+. +
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-L 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-T
T ss_pred EEEEECCCCcCHHHHHHHHHH-C
Confidence 478999999999999999998 6
No 398
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.26 E-value=0.05 Score=55.81 Aligned_cols=33 Identities=21% Similarity=0.346 Sum_probs=26.5
Q ss_pred cceeecCCCCchHHHHHHHHHHhcCCCCceeEeecccc
Q 003088 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEY 698 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~ 698 (849)
.++|.||||+|||++|+.|++.+ .+..++..++
T Consensus 31 ~I~l~G~~GsGKsT~a~~L~~~~-----g~~~is~~~~ 63 (243)
T 3tlx_A 31 RYIFLGAPGSGKGTQSLNLKKSH-----CYCHLSTGDL 63 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH-----CCEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-----CCeEEecHHH
Confidence 48999999999999999999876 2555655544
No 399
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.26 E-value=0.019 Score=55.47 Aligned_cols=32 Identities=22% Similarity=0.385 Sum_probs=24.6
Q ss_pred ceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccc
Q 003088 662 MLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSE 697 (849)
Q Consensus 662 lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~ 697 (849)
++|.|+||+|||++|+.|++.. ..+..++...
T Consensus 5 I~i~G~~GsGKST~a~~L~~~~----~~~~~i~~d~ 36 (181)
T 1ly1_A 5 ILTIGCPGSGKSTWAREFIAKN----PGFYNINRDD 36 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHHHS----TTEEEECHHH
T ss_pred EEEecCCCCCHHHHHHHHHhhc----CCcEEecHHH
Confidence 8899999999999999999831 1355565533
No 400
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=94.22 E-value=0.13 Score=52.12 Aligned_cols=23 Identities=26% Similarity=0.444 Sum_probs=18.4
Q ss_pred CCCCeEeCCCCChHHHHHHHHHH
Q 003088 311 KNNPILLGESGVGKTAIAEGLAI 333 (849)
Q Consensus 311 ~~niLL~GppGtGKT~la~~la~ 333 (849)
..++++.||+|+|||++...+..
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCcHHhHHHHHh
Confidence 45799999999999987665543
No 401
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.21 E-value=0.038 Score=58.61 Aligned_cols=83 Identities=16% Similarity=0.267 Sum_probs=46.6
Q ss_pred cceeecCCCCchHHHHHHHHHHhcC--CCCceeEeeccccccccccccccCCCCCcc--cc-ccCcch-hH---H---HH
Q 003088 661 AMLFCGPTGVGKTELAKSLAACYFG--SESSMLRLDMSEYMERHTVSKLIGSPPGYV--GY-EEGGLL-TE---A---IR 728 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~l~~--~~~~~i~i~~~~~~~~~~~~~l~g~~~g~v--g~-~~~~~l-~~---~---i~ 728 (849)
.++++||||+|||++|-.++..... .+..++.+|..+-...... .-+|-....+ -. .....+ .+ . ++
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra-~~lGvd~d~llv~~~~~~E~~~l~i~~~l~~i~ 108 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYL-RSMGVDPERVIHTPVQSLEQLRIDMVNQLDAIE 108 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHH-HHTTCCGGGEEEEECSBHHHHHHHHHHHHHTCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHH-HHhCCCHHHeEEEcCCCHHHHHHHHHHHHHHhh
Confidence 3899999999999998877665432 2456788887654332111 1122211100 00 001111 11 1 34
Q ss_pred hCCCeEEEEeCccccC
Q 003088 729 RRPFTLLLLDEIEKAH 744 (849)
Q Consensus 729 ~~~~~vl~lDEid~l~ 744 (849)
.....+|+||-|..+.
T Consensus 109 ~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 109 RGEKVVVFIDSLGNLA 124 (333)
T ss_dssp TTCCEEEEEECSTTCB
T ss_pred ccCceEEEEecccccc
Confidence 4457899999998874
No 402
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.21 E-value=0.021 Score=56.17 Aligned_cols=32 Identities=25% Similarity=0.428 Sum_probs=26.0
Q ss_pred ceeecCCCCchHHHHHHHHHHhcCCCCceeEeecccc
Q 003088 662 MLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEY 698 (849)
Q Consensus 662 lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~ 698 (849)
++|.|+||+|||++|+.|++.+ + +..++...+
T Consensus 15 I~l~G~~GsGKsT~a~~L~~~l---~--~~~i~~d~~ 46 (199)
T 2bwj_A 15 IFIIGGPGSGKGTQCEKLVEKY---G--FTHLSTGEL 46 (199)
T ss_dssp EEEEECTTSSHHHHHHHHHHHH---T--CEEEEHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh---C--CeEEcHHHH
Confidence 8899999999999999999986 2 455555444
No 403
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.20 E-value=0.025 Score=55.94 Aligned_cols=24 Identities=25% Similarity=0.266 Sum_probs=21.6
Q ss_pred CCCeEeCCCCChHHHHHHHHHHHh
Q 003088 312 NNPILLGESGVGKTAIAEGLAIRI 335 (849)
Q Consensus 312 ~niLL~GppGtGKT~la~~la~~l 335 (849)
..+.|+|++|+||||+++.|++.+
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 346899999999999999999987
No 404
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.20 E-value=0.022 Score=56.84 Aligned_cols=39 Identities=23% Similarity=0.302 Sum_probs=28.3
Q ss_pred HHHHHHHHHhc--CCCCCCeEeCCCCChHHHHHHHHHHHhh
Q 003088 298 EIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIV 336 (849)
Q Consensus 298 ~i~~l~~~l~~--~~~~niLL~GppGtGKT~la~~la~~l~ 336 (849)
.++.+.+.+.. ....-+.|+||+|+||||+++.|+..+.
T Consensus 7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 7 LCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34445444432 2334568999999999999999999885
No 405
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.19 E-value=0.022 Score=57.47 Aligned_cols=34 Identities=18% Similarity=0.366 Sum_probs=28.1
Q ss_pred ceeecCCCCchHHHHHHHHHHhcCCCCceeEeecccccc
Q 003088 662 MLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYME 700 (849)
Q Consensus 662 lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~ 700 (849)
++|.||||+||++.|+.|++.+ .+.+++..++..
T Consensus 32 I~llGpPGsGKgTqa~~L~~~~-----g~~hIstGdllR 65 (217)
T 3umf_A 32 IFVLGGPGSGKGTQCEKLVQKF-----HFNHLSSGDLLR 65 (217)
T ss_dssp EEEECCTTCCHHHHHHHHHHHH-----CCEEECHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH-----CCceEcHHHHHH
Confidence 7788999999999999999986 367777665553
No 406
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.18 E-value=0.019 Score=56.25 Aligned_cols=35 Identities=23% Similarity=0.413 Sum_probs=27.1
Q ss_pred cceeecCCCCchHHHHHHHHHHhcCCCCceeEeecccc
Q 003088 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEY 698 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~ 698 (849)
.+.|.||+|+|||++++.|+... +...+.++..++
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~~---~~g~i~i~~d~~ 45 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANLP---GVPKVHFHSDDL 45 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTCS---SSCEEEECTTHH
T ss_pred EEEEECCCCCCHHHHHHHHHhcc---CCCeEEEcccch
Confidence 48899999999999999999762 334566766544
No 407
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.17 E-value=0.027 Score=55.11 Aligned_cols=33 Identities=27% Similarity=0.202 Sum_probs=25.7
Q ss_pred ceeecCCCCchHHHHHHHHHHhcCCCCceeEee
Q 003088 662 MLFCGPTGVGKTELAKSLAACYFGSESSMLRLD 694 (849)
Q Consensus 662 lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~ 694 (849)
+.|.|++|+|||++|+.|++.+...+.+++..+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 789999999999999999998732244555544
No 408
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.17 E-value=0.027 Score=54.63 Aligned_cols=37 Identities=22% Similarity=0.317 Sum_probs=29.1
Q ss_pred cceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccc
Q 003088 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSE 697 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~ 697 (849)
.+.|.|++|+|||++++.|+..+...+.+++.+|...
T Consensus 7 ~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~ 43 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN 43 (179)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChH
Confidence 4889999999999999999998743345677666543
No 409
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.14 E-value=0.019 Score=57.26 Aligned_cols=27 Identities=15% Similarity=0.100 Sum_probs=23.6
Q ss_pred CCCCeEeCCCCChHHHHHHHHHHHhhh
Q 003088 311 KNNPILLGESGVGKTAIAEGLAIRIVQ 337 (849)
Q Consensus 311 ~~niLL~GppGtGKT~la~~la~~l~~ 337 (849)
+..++|.|++|+||||+++.|++.+..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 345799999999999999999998854
No 410
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.13 E-value=0.018 Score=57.61 Aligned_cols=25 Identities=32% Similarity=0.321 Sum_probs=21.9
Q ss_pred CCCCeEeCCCCChHHHHHHHHHHHh
Q 003088 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (849)
Q Consensus 311 ~~niLL~GppGtGKT~la~~la~~l 335 (849)
+.-++|+||+|+||||+++.|+..+
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3457899999999999999999876
No 411
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.12 E-value=0.019 Score=56.85 Aligned_cols=25 Identities=20% Similarity=0.143 Sum_probs=22.5
Q ss_pred CCCCeEeCCCCChHHHHHHHHHHHh
Q 003088 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (849)
Q Consensus 311 ~~niLL~GppGtGKT~la~~la~~l 335 (849)
...++|.|++|+||||+++.|++.+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3468999999999999999999877
No 412
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=94.08 E-value=0.08 Score=53.47 Aligned_cols=25 Identities=24% Similarity=0.181 Sum_probs=20.5
Q ss_pred CeEeCCCCChHHHHHHHHHHHhhhC
Q 003088 314 PILLGESGVGKTAIAEGLAIRIVQA 338 (849)
Q Consensus 314 iLL~GppGtGKT~la~~la~~l~~~ 338 (849)
.+++|+.|+||||.+-..+.+....
T Consensus 22 ~v~~G~MgsGKTT~lL~~~~r~~~~ 46 (234)
T 2orv_A 22 QVILGPMFSGKSTELMRRVRRFQIA 46 (234)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHTT
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHC
Confidence 3789999999998888888776544
No 413
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=94.08 E-value=0.48 Score=46.50 Aligned_cols=19 Identities=16% Similarity=0.237 Sum_probs=16.2
Q ss_pred CCCCeEeCCCCChHHHHHH
Q 003088 311 KNNPILLGESGVGKTAIAE 329 (849)
Q Consensus 311 ~~niLL~GppGtGKT~la~ 329 (849)
..++++.+|+|+|||..+-
T Consensus 40 ~~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 40 GRDILARAKNGTGKSGAYL 58 (206)
T ss_dssp TCCEEEECCSSSTTHHHHH
T ss_pred CCCEEEECCCCCchHHHHH
Confidence 3689999999999997655
No 414
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.07 E-value=0.038 Score=54.74 Aligned_cols=33 Identities=24% Similarity=0.414 Sum_probs=26.8
Q ss_pred cceeecCCCCchHHHHHHHHHHhcCCCCceeEeecccc
Q 003088 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEY 698 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~ 698 (849)
.+.|.||+|+|||++++.|+..+ | .+.++...+
T Consensus 31 ~i~l~G~~GsGKSTl~~~L~~~~-g----~~~i~~d~~ 63 (200)
T 4eun_A 31 HVVVMGVSGSGKTTIAHGVADET-G----LEFAEADAF 63 (200)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH-C----CEEEEGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHhh-C----CeEEccccc
Confidence 48899999999999999999886 2 456666554
No 415
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.05 E-value=0.024 Score=55.32 Aligned_cols=33 Identities=15% Similarity=0.332 Sum_probs=25.8
Q ss_pred cceeecCCCCchHHHHHHHHHHhcCCCCceeEeecccc
Q 003088 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEY 698 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~ 698 (849)
.++|.|+||+|||++|+.|++.+ + +..++...+
T Consensus 8 ~I~l~G~~GsGKsT~~~~L~~~l---~--~~~i~~d~~ 40 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANIVRDF---G--WVHLSAGDL 40 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH---C--CEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---C--CeEeeHHHH
Confidence 38899999999999999999876 2 445555433
No 416
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=94.05 E-value=0.093 Score=52.40 Aligned_cols=94 Identities=17% Similarity=0.215 Sum_probs=48.3
Q ss_pred ceeecCCCCchHH-HHHHHHHHhcCCCCceeEeeccc---cccccccccccCCCCCccccccCcchhHHHHhCCCeEEEE
Q 003088 662 MLFCGPTGVGKTE-LAKSLAACYFGSESSMLRLDMSE---YMERHTVSKLIGSPPGYVGYEEGGLLTEAIRRRPFTLLLL 737 (849)
Q Consensus 662 lL~~Gp~GtGKt~-lA~~la~~l~~~~~~~i~i~~~~---~~~~~~~~~l~g~~~g~vg~~~~~~l~~~i~~~~~~vl~l 737 (849)
.+++||-|+|||+ +.+.+.+.. ..+...+.+...- +......+. .|....-+-......+.+.+ ..+..+|+|
T Consensus 31 ~vitG~M~sGKTT~Llr~~~r~~-~~g~kvli~kp~~D~R~~~~~I~Sr-~G~~~~a~~v~~~~di~~~i-~~~~dvV~I 107 (219)
T 3e2i_A 31 ECITGSMFSGKSEELIRRLRRGI-YAKQKVVVFKPAIDDRYHKEKVVSH-NGNAIEAINISKASEIMTHD-LTNVDVIGI 107 (219)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHH-HTTCCEEEEEEC-----------CB-TTBCCEEEEESSGGGGGGSC-CTTCSEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHH-HcCCceEEEEeccCCcchhhhHHHh-cCCceeeEEeCCHHHHHHHH-hcCCCEEEE
Confidence 6789999999999 555655443 2334444443221 111111111 11100000011111122222 124569999
Q ss_pred eCccccCHHHHHHHHHHhhcC
Q 003088 738 DEIEKAHPDIFNILLQVFEDG 758 (849)
Q Consensus 738 DEid~l~~~~~~~Ll~~le~g 758 (849)
||+.-+++++.+.|..+.+.|
T Consensus 108 DEaQFf~~~~v~~l~~la~~g 128 (219)
T 3e2i_A 108 DEVQFFDDEIVSIVEKLSADG 128 (219)
T ss_dssp CCGGGSCTHHHHHHHHHHHTT
T ss_pred echhcCCHHHHHHHHHHHHCC
Confidence 999999999999888887654
No 417
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=94.03 E-value=0.61 Score=47.26 Aligned_cols=19 Identities=21% Similarity=0.223 Sum_probs=16.1
Q ss_pred CCCCeEeCCCCChHHHHHH
Q 003088 311 KNNPILLGESGVGKTAIAE 329 (849)
Q Consensus 311 ~~niLL~GppGtGKT~la~ 329 (849)
..++++.+|+|+|||..+.
T Consensus 66 ~~~~l~~a~TGsGKT~~~~ 84 (245)
T 3dkp_A 66 GRELLASAPTGSGKTLAFS 84 (245)
T ss_dssp TCCEEEECCTTSCHHHHHH
T ss_pred CCCEEEECCCCCcHHHHHH
Confidence 3579999999999998754
No 418
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=93.99 E-value=0.025 Score=57.56 Aligned_cols=33 Identities=27% Similarity=0.444 Sum_probs=26.1
Q ss_pred cceeecCCCCchHHHHHHHHHHhcCCCCceeEeecccc
Q 003088 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEY 698 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~ 698 (849)
.++|.|+||+|||++|+.|++.+ + +..++..++
T Consensus 18 ~I~l~G~~GsGKsT~a~~La~~l---~--~~~i~~d~l 50 (233)
T 1ak2_A 18 RAVLLGPPGAGKGTQAPKLAKNF---C--VCHLATGDM 50 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH---T--CEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---C--CceecHHHH
Confidence 48999999999999999999987 2 444555443
No 419
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.97 E-value=0.027 Score=55.89 Aligned_cols=25 Identities=28% Similarity=0.383 Sum_probs=21.9
Q ss_pred CCCCeEeCCCCChHHHHHHHHHHHh
Q 003088 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (849)
Q Consensus 311 ~~niLL~GppGtGKT~la~~la~~l 335 (849)
+..+.|+||+|+||||+++.|+..+
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4568999999999999999999876
No 420
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=93.97 E-value=0.025 Score=56.90 Aligned_cols=33 Identities=18% Similarity=0.402 Sum_probs=26.0
Q ss_pred cceeecCCCCchHHHHHHHHHHhcCCCCceeEeecccc
Q 003088 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEY 698 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~ 698 (849)
.++|.|+||+|||++|+.|++.+ + +..++..++
T Consensus 7 ~I~l~G~~GsGKsT~a~~La~~l---~--~~~i~~d~l 39 (217)
T 3be4_A 7 NLILIGAPGSGKGTQCEFIKKEY---G--LAHLSTGDM 39 (217)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH---C--CEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---C--ceEEehhHH
Confidence 48999999999999999999987 2 444555443
No 421
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.95 E-value=0.024 Score=58.24 Aligned_cols=25 Identities=24% Similarity=0.477 Sum_probs=22.8
Q ss_pred CCCCeEeCCCCChHHHHHHHHHHHh
Q 003088 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (849)
Q Consensus 311 ~~niLL~GppGtGKT~la~~la~~l 335 (849)
...++|+||+|+||||+++.|++.+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4568999999999999999999887
No 422
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.94 E-value=0.04 Score=61.45 Aligned_cols=25 Identities=16% Similarity=0.292 Sum_probs=21.7
Q ss_pred CCCCeEeCCCCChHHHHHHHHHHHh
Q 003088 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (849)
Q Consensus 311 ~~niLL~GppGtGKT~la~~la~~l 335 (849)
+.-++|+|+||+||||+++.|++.+
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhc
Confidence 3457899999999999999999876
No 423
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.94 E-value=0.033 Score=55.14 Aligned_cols=33 Identities=21% Similarity=0.437 Sum_probs=25.9
Q ss_pred cceeecCCCCchHHHHHHHHHHhcCCCCceeEeecccc
Q 003088 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEY 698 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~ 698 (849)
.++|.|++|+|||++|+.|++.+ + +..+++..+
T Consensus 17 ~I~l~G~~GsGKsT~~~~L~~~~---g--~~~i~~d~~ 49 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCEKLVKDY---S--FVHLSAGDL 49 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS---S--CEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHc---C--ceEEeHHHH
Confidence 48899999999999999999875 2 455555443
No 424
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.91 E-value=0.023 Score=57.58 Aligned_cols=33 Identities=18% Similarity=0.440 Sum_probs=25.8
Q ss_pred cceeecCCCCchHHHHHHHHHHhcCCCCceeEeecccc
Q 003088 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEY 698 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~ 698 (849)
.++|.|+||+|||++|+.|++.+ + +..++..++
T Consensus 9 ~I~l~G~~GsGKsT~a~~La~~l---~--~~~i~~d~~ 41 (227)
T 1zd8_A 9 RAVIMGAPGSGKGTVSSRITTHF---E--LKHLSSGDL 41 (227)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS---S--SEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHc---C--CeEEechHH
Confidence 38999999999999999999875 2 445554443
No 425
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.91 E-value=0.024 Score=55.51 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=20.0
Q ss_pred CCeEeCCCCChHHHHHHHHHHHh
Q 003088 313 NPILLGESGVGKTAIAEGLAIRI 335 (849)
Q Consensus 313 niLL~GppGtGKT~la~~la~~l 335 (849)
.++|+||+|+||||+++.|+...
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~ 26 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQL 26 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHhccc
Confidence 36899999999999999998743
No 426
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=93.91 E-value=0.17 Score=50.90 Aligned_cols=20 Identities=25% Similarity=0.247 Sum_probs=16.7
Q ss_pred CCCCeEeCCCCChHHHHHHH
Q 003088 311 KNNPILLGESGVGKTAIAEG 330 (849)
Q Consensus 311 ~~niLL~GppGtGKT~la~~ 330 (849)
..++++.+|+|+|||..+..
T Consensus 57 ~~~~l~~apTGsGKT~~~~l 76 (228)
T 3iuy_A 57 GIDLIVVAQTGTGKTLSYLM 76 (228)
T ss_dssp TCCEEEECCTTSCHHHHHHH
T ss_pred CCCEEEECCCCChHHHHHHH
Confidence 46899999999999986543
No 427
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=93.90 E-value=0.029 Score=57.13 Aligned_cols=25 Identities=28% Similarity=0.450 Sum_probs=22.7
Q ss_pred CCCCeEeCCCCChHHHHHHHHHHHh
Q 003088 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (849)
Q Consensus 311 ~~niLL~GppGtGKT~la~~la~~l 335 (849)
+..+.|.||+|+||||+++.|++.+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3468999999999999999999988
No 428
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.86 E-value=0.029 Score=56.21 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=20.9
Q ss_pred ceeecCCCCchHHHHHHHHHHh
Q 003088 662 MLFCGPTGVGKTELAKSLAACY 683 (849)
Q Consensus 662 lL~~Gp~GtGKt~lA~~la~~l 683 (849)
++|.|+||+|||++|+.|++.+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8899999999999999999976
No 429
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.86 E-value=0.025 Score=56.00 Aligned_cols=24 Identities=33% Similarity=0.445 Sum_probs=21.4
Q ss_pred CCCeEeCCCCChHHHHHHHHHHHh
Q 003088 312 NNPILLGESGVGKTAIAEGLAIRI 335 (849)
Q Consensus 312 ~niLL~GppGtGKT~la~~la~~l 335 (849)
.-+.|+||+|+||||+++.|+..+
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 457899999999999999999875
No 430
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.86 E-value=0.043 Score=54.46 Aligned_cols=24 Identities=29% Similarity=0.303 Sum_probs=21.8
Q ss_pred cceeecCCCCchHHHHHHHHHHhc
Q 003088 661 AMLFCGPTGVGKTELAKSLAACYF 684 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~l~ 684 (849)
.++|.|+||+|||++|+.|++.+.
T Consensus 6 ~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHh
Confidence 388999999999999999999873
No 431
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.85 E-value=0.023 Score=57.30 Aligned_cols=33 Identities=12% Similarity=0.363 Sum_probs=25.9
Q ss_pred cceeecCCCCchHHHHHHHHHHhcCCCCceeEeecccc
Q 003088 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEY 698 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~ 698 (849)
.++|.|+||+|||++|+.|++.+ + +..++.+++
T Consensus 7 ~I~l~G~~GsGKsT~~~~La~~l---~--~~~i~~d~~ 39 (222)
T 1zak_A 7 KVMISGAPASGKGTQCELIKTKY---Q--LAHISAGDL 39 (222)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH---C--CEECCHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---C--CceecHHHH
Confidence 38999999999999999999987 2 345554433
No 432
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=93.85 E-value=0.03 Score=55.52 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=21.6
Q ss_pred CCeEeCCCCChHHHHHHHHHHHh
Q 003088 313 NPILLGESGVGKTAIAEGLAIRI 335 (849)
Q Consensus 313 niLL~GppGtGKT~la~~la~~l 335 (849)
.+.|.|++|+||||+++.|++.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 57899999999999999999988
No 433
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=93.83 E-value=0.052 Score=61.78 Aligned_cols=59 Identities=8% Similarity=-0.012 Sum_probs=42.2
Q ss_pred hhhHHHHhhcCC-CCccccHHHHHHHHHHH--hcCCCCCCeEeCCCCChHHHHHHHHHHHhh
Q 003088 278 VDLTARASEELI-DPVIGRETEIQRIIQIL--CRRTKNNPILLGESGVGKTAIAEGLAIRIV 336 (849)
Q Consensus 278 ~~l~~~~~~~~l-~~iiG~~~~i~~l~~~l--~~~~~~niLL~GppGtGKT~la~~la~~l~ 336 (849)
..+.+..+.+.. -+...+.+..+.+.+.. ..+...+++|.|.+|+||||++++||+++.
T Consensus 359 t~IR~~Lr~G~~~P~~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 359 TELRRRLRVGGEIPEWFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp HHHHHHHHHTCCCCTTTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCCCccccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHH
Confidence 344555666653 35677776666666654 223446789999999999999999999995
No 434
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.81 E-value=0.022 Score=56.43 Aligned_cols=25 Identities=28% Similarity=0.275 Sum_probs=22.0
Q ss_pred CCCCeEeCCCCChHHHHHHHHHHHh
Q 003088 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (849)
Q Consensus 311 ~~niLL~GppGtGKT~la~~la~~l 335 (849)
+..+.|+||+|+||||+++.|+..+
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4467899999999999999999876
No 435
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.75 E-value=0.025 Score=56.19 Aligned_cols=21 Identities=38% Similarity=0.284 Sum_probs=19.2
Q ss_pred CCeEeCCCCChHHHHHHHHHH
Q 003088 313 NPILLGESGVGKTAIAEGLAI 333 (849)
Q Consensus 313 niLL~GppGtGKT~la~~la~ 333 (849)
.+.|+|++|+||||+++.|+.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999987
No 436
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=93.72 E-value=0.22 Score=46.53 Aligned_cols=23 Identities=30% Similarity=0.557 Sum_probs=20.2
Q ss_pred CCCeEeCCCCChHHHHHHHHHHH
Q 003088 312 NNPILLGESGVGKTAIAEGLAIR 334 (849)
Q Consensus 312 ~niLL~GppGtGKT~la~~la~~ 334 (849)
-+++++|++|+|||+++..+...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999988764
No 437
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=93.68 E-value=0.03 Score=59.79 Aligned_cols=32 Identities=38% Similarity=0.660 Sum_probs=25.6
Q ss_pred cceeecCCCCchHHHHHHHHHHhcCCCCceeEeec
Q 003088 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDM 695 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~ 695 (849)
.++++||+|+|||++|+.||+.+ +..++..|.
T Consensus 7 ~i~i~GptGsGKTtla~~La~~l---~~~iis~Ds 38 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADAL---PCELISVDS 38 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS---CEEEEEECT
T ss_pred EEEEECCCCCCHHHHHHHHHHHc---CCcEEeccc
Confidence 38899999999999999999986 334555543
No 438
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=93.66 E-value=0.078 Score=52.52 Aligned_cols=36 Identities=25% Similarity=0.235 Sum_probs=26.9
Q ss_pred cceeecCCCCchHHHHHHHHHHhcCCCCceeEeecc
Q 003088 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMS 696 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~ 696 (849)
.+.+.|++|+|||++++.|+..+...+..++.++..
T Consensus 24 ~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d 59 (201)
T 1rz3_A 24 VLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD 59 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccC
Confidence 488999999999999999998773334445555443
No 439
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.65 E-value=0.031 Score=55.36 Aligned_cols=26 Identities=31% Similarity=0.565 Sum_probs=22.6
Q ss_pred CCCCCeEeCCCCChHHHHHHHHHHHh
Q 003088 310 TKNNPILLGESGVGKTAIAEGLAIRI 335 (849)
Q Consensus 310 ~~~niLL~GppGtGKT~la~~la~~l 335 (849)
...-++|+||+|+|||||++.|+...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 44567899999999999999999875
No 440
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.64 E-value=0.032 Score=54.54 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=21.4
Q ss_pred CCeEeCCCCChHHHHHHHHHHHhh
Q 003088 313 NPILLGESGVGKTAIAEGLAIRIV 336 (849)
Q Consensus 313 niLL~GppGtGKT~la~~la~~l~ 336 (849)
-+.|+||+|+||||+++.|+..+.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 468999999999999999998873
No 441
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=93.60 E-value=0.043 Score=53.42 Aligned_cols=76 Identities=22% Similarity=0.283 Sum_probs=43.6
Q ss_pred ceeecCCCCchHHHHHHHHHHhcCCCCceeEeecccccccccccc----ccCCCCCccccccCcchhHHHHh--CCCeEE
Q 003088 662 MLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSK----LIGSPPGYVGYEEGGLLTEAIRR--RPFTLL 735 (849)
Q Consensus 662 lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~----l~g~~~g~vg~~~~~~l~~~i~~--~~~~vl 735 (849)
+|++|++|+|||++|..++.. +.+.++++.....+.....+ ....+++|.-.++...+.+.+.. .+..++
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~----~~~~~yiaT~~~~d~e~~~rI~~h~~~R~~~w~tiE~p~~l~~~l~~~~~~~~~V 77 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD----APQVLYIATSQILDDEMAARIQHHKDGRPAHWRTAECWRHLDTLITADLAPDDAI 77 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS----CSSEEEEECCCC------CHHHHHHHTSCTTEEEECCSSCGGGTSCTTSCTTCEE
T ss_pred EEEECCCCCcHHHHHHHHHhc----CCCeEEEecCCCCCHHHHHHHHHHHhcCCCCcEEEEcHhhHHHHHHhhcccCCeE
Confidence 789999999999999999854 34566776654322111111 11234455544433345555533 223688
Q ss_pred EEeCcc
Q 003088 736 LLDEIE 741 (849)
Q Consensus 736 ~lDEid 741 (849)
+||-+.
T Consensus 78 LvDclt 83 (180)
T 1c9k_A 78 LLECIT 83 (180)
T ss_dssp EEECHH
T ss_pred EEcCHH
Confidence 888663
No 442
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=93.59 E-value=0.39 Score=48.39 Aligned_cols=20 Identities=20% Similarity=0.136 Sum_probs=16.8
Q ss_pred CCCCeEeCCCCChHHHHHHH
Q 003088 311 KNNPILLGESGVGKTAIAEG 330 (849)
Q Consensus 311 ~~niLL~GppGtGKT~la~~ 330 (849)
..++++.+|+|+|||..+-.
T Consensus 62 ~~~~li~a~TGsGKT~~~~~ 81 (236)
T 2pl3_A 62 GKDVLGAAKTGSGKTLAFLV 81 (236)
T ss_dssp TCCEEEECCTTSCHHHHHHH
T ss_pred CCCEEEEeCCCCcHHHHHHH
Confidence 46899999999999986543
No 443
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=93.54 E-value=0.034 Score=60.49 Aligned_cols=27 Identities=19% Similarity=0.257 Sum_probs=22.5
Q ss_pred CCCCCCeEeCCCCChHHHHHHHHHHHh
Q 003088 309 RTKNNPILLGESGVGKTAIAEGLAIRI 335 (849)
Q Consensus 309 ~~~~niLL~GppGtGKT~la~~la~~l 335 (849)
....-+.|+||+|+||||+++.|+..+
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 344457899999999999999999764
No 444
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.51 E-value=0.041 Score=53.97 Aligned_cols=32 Identities=22% Similarity=0.241 Sum_probs=24.6
Q ss_pred ceeecCCCCchHHHHHHHHHHhcCCCCceeEe
Q 003088 662 MLFCGPTGVGKTELAKSLAACYFGSESSMLRL 693 (849)
Q Consensus 662 lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i 693 (849)
+.|.|++|+|||++++.|++.+...+.+++..
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~ 34 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEe
Confidence 78999999999999999999874334445433
No 445
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=93.43 E-value=0.38 Score=50.10 Aligned_cols=40 Identities=18% Similarity=0.106 Sum_probs=28.3
Q ss_pred ccHHHHHHHHHHHhcCCCCCCeEeCCCCChHHHHHHHHHHHhh
Q 003088 294 GRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIV 336 (849)
Q Consensus 294 G~~~~i~~l~~~l~~~~~~niLL~GppGtGKT~la~~la~~l~ 336 (849)
-+..+.+.+..++.. .+.+|.+|+|+|||.++-.++....
T Consensus 114 l~~~Q~~ai~~~l~~---~~~ll~~~tGsGKT~~~~~~~~~~~ 153 (282)
T 1rif_A 114 PHWYQKDAVFEGLVN---RRRILNLPTSAGRSLIQALLARYYL 153 (282)
T ss_dssp CCHHHHHHHHHHHHH---SEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhc---CCeEEEcCCCCCcHHHHHHHHHHHH
Confidence 344455555555543 3568899999999999988777653
No 446
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=93.41 E-value=0.11 Score=59.42 Aligned_cols=26 Identities=23% Similarity=0.254 Sum_probs=23.1
Q ss_pred CCCeEeCCCCChHHHHHHHHHHHhhh
Q 003088 312 NNPILLGESGVGKTAIAEGLAIRIVQ 337 (849)
Q Consensus 312 ~niLL~GppGtGKT~la~~la~~l~~ 337 (849)
.-++|+|.||+||||+++.|++.+..
T Consensus 36 ~lIvlvGlpGSGKSTia~~La~~L~~ 61 (520)
T 2axn_A 36 TVIVMVGLPARGKTYISKKLTRYLNW 61 (520)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 35799999999999999999998853
No 447
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=93.37 E-value=0.3 Score=55.46 Aligned_cols=38 Identities=16% Similarity=0.331 Sum_probs=27.3
Q ss_pred ccceeecCCCCchHHHHHHHHHH-hcC---CCCceeEeeccc
Q 003088 660 AAMLFCGPTGVGKTELAKSLAAC-YFG---SESSMLRLDMSE 697 (849)
Q Consensus 660 ~~lL~~Gp~GtGKt~lA~~la~~-l~~---~~~~~i~i~~~~ 697 (849)
.|+|+.|++|+|||++.+.|... ++. ....|+.+|...
T Consensus 168 pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~ 209 (512)
T 2ius_A 168 PHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKM 209 (512)
T ss_dssp CSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCch
Confidence 36999999999999999988753 322 123466677553
No 448
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=93.29 E-value=0.039 Score=55.71 Aligned_cols=22 Identities=32% Similarity=0.596 Sum_probs=20.9
Q ss_pred ceeecCCCCchHHHHHHHHHHh
Q 003088 662 MLFCGPTGVGKTELAKSLAACY 683 (849)
Q Consensus 662 lL~~Gp~GtGKt~lA~~la~~l 683 (849)
++|.|+||+|||++|+.|++.+
T Consensus 3 I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8899999999999999999986
No 449
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=93.29 E-value=0.091 Score=53.41 Aligned_cols=19 Identities=32% Similarity=0.555 Sum_probs=15.4
Q ss_pred cceeecCCCCchHHHHHHH
Q 003088 661 AMLFCGPTGVGKTELAKSL 679 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~l 679 (849)
.+++.||+|||||++...+
T Consensus 78 ~~~i~g~TGsGKTt~~~~~ 96 (235)
T 3llm_A 78 VVIIRGATGCGKTTQVPQF 96 (235)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEEeCCCCCcHHhHHHH
Confidence 3899999999999765543
No 450
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=93.28 E-value=0.05 Score=54.53 Aligned_cols=24 Identities=33% Similarity=0.411 Sum_probs=22.2
Q ss_pred CCCeEeCCCCChHHHHHHHHHHHh
Q 003088 312 NNPILLGESGVGKTAIAEGLAIRI 335 (849)
Q Consensus 312 ~niLL~GppGtGKT~la~~la~~l 335 (849)
..+.|+|++|+||||+++.|++.+
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 468999999999999999999987
No 451
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=93.15 E-value=0.25 Score=56.90 Aligned_cols=54 Identities=19% Similarity=0.136 Sum_probs=37.2
Q ss_pred HhhcC-CCCccccHHHHHHHHHHHh--cCCCCCCeEeCCCCChHHHHHHHHHHHhhh
Q 003088 284 ASEEL-IDPVIGRETEIQRIIQILC--RRTKNNPILLGESGVGKTAIAEGLAIRIVQ 337 (849)
Q Consensus 284 ~~~~~-l~~iiG~~~~i~~l~~~l~--~~~~~niLL~GppGtGKT~la~~la~~l~~ 337 (849)
.+.+. ..+...+.+..+.+.+... ......++|+|++|+||||+++.|++.+..
T Consensus 342 L~~g~~~p~~~~r~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~~ 398 (546)
T 2gks_A 342 LKQGRKLPEWFTRPEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQA 398 (546)
T ss_dssp HTTTCCCCTTTSCHHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred hcCCCCCCccccchhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhhh
Confidence 44443 2355666666655655552 223346789999999999999999998854
No 452
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.15 E-value=0.056 Score=55.77 Aligned_cols=25 Identities=28% Similarity=0.357 Sum_probs=22.7
Q ss_pred CCCCeEeCCCCChHHHHHHHHHHHh
Q 003088 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (849)
Q Consensus 311 ~~niLL~GppGtGKT~la~~la~~l 335 (849)
...+.|.||+|+||||+++.|++++
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhc
Confidence 3468899999999999999999988
No 453
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=93.14 E-value=0.047 Score=57.74 Aligned_cols=31 Identities=32% Similarity=0.535 Sum_probs=25.0
Q ss_pred ceeecCCCCchHHHHHHHHHHhcCCCCceeEeec
Q 003088 662 MLFCGPTGVGKTELAKSLAACYFGSESSMLRLDM 695 (849)
Q Consensus 662 lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~ 695 (849)
+++.||+|+|||++|..|++.+ +..++..|.
T Consensus 13 i~i~GptgsGKt~la~~La~~~---~~~iis~Ds 43 (316)
T 3foz_A 13 IFLMGPTASGKTALAIELRKIL---PVELISVDS 43 (316)
T ss_dssp EEEECCTTSCHHHHHHHHHHHS---CEEEEECCT
T ss_pred EEEECCCccCHHHHHHHHHHhC---CCcEEeccc
Confidence 7889999999999999999986 334555544
No 454
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.14 E-value=0.042 Score=54.13 Aligned_cols=22 Identities=18% Similarity=0.463 Sum_probs=21.0
Q ss_pred ceeecCCCCchHHHHHHHHHHh
Q 003088 662 MLFCGPTGVGKTELAKSLAACY 683 (849)
Q Consensus 662 lL~~Gp~GtGKt~lA~~la~~l 683 (849)
+.|.|++|+|||++++.|++.+
T Consensus 3 I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 3 IAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCccCHHHHHHHHHHhc
Confidence 7899999999999999999987
No 455
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.14 E-value=0.038 Score=55.33 Aligned_cols=41 Identities=22% Similarity=0.224 Sum_probs=31.9
Q ss_pred cHHHHHHHHHHHhcCCCCCCeEeCCCCChHHHHHHHHHHHh
Q 003088 295 RETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRI 335 (849)
Q Consensus 295 ~~~~i~~l~~~l~~~~~~niLL~GppGtGKT~la~~la~~l 335 (849)
.++....+...+.......++|+|++|+||||++..++..+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 14 NKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 34455555555555566789999999999999999999876
No 456
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.14 E-value=0.054 Score=53.79 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=21.4
Q ss_pred cceeecCCCCchHHHHHHHHHHh
Q 003088 661 AMLFCGPTGVGKTELAKSLAACY 683 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~l 683 (849)
.++|.|++|+|||++|+.|++.+
T Consensus 12 ~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 12 FIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 48899999999999999999976
No 457
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=93.12 E-value=0.035 Score=54.79 Aligned_cols=24 Identities=38% Similarity=0.464 Sum_probs=21.5
Q ss_pred CCCeEeCCCCChHHHHHHHHHHHh
Q 003088 312 NNPILLGESGVGKTAIAEGLAIRI 335 (849)
Q Consensus 312 ~niLL~GppGtGKT~la~~la~~l 335 (849)
..++|.||+|+|||++|..|+++.
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 458999999999999999999775
No 458
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=93.12 E-value=0.032 Score=62.35 Aligned_cols=78 Identities=21% Similarity=0.177 Sum_probs=0.0
Q ss_pred cCCCCCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhhcccc-------------------ccchHH
Q 003088 308 RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAK-------------------ERGELE 368 (849)
Q Consensus 308 ~~~~~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~~~~~-------------------~~g~~e 368 (849)
......++|+|++|+||||++..||..+... +.++..+++.....+.. ...+-.
T Consensus 96 ~~~~~vI~ivG~~GvGKTTla~~La~~l~~~-------G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~ 168 (432)
T 2v3c_C 96 PKKQNVILLVGIQGSGKTTTAAKLARYIQKR-------GLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPV 168 (432)
T ss_dssp SSSCCCEEEECCSSSSTTHHHHHHHHHHHHH-------HCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHc-------CCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHH
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCcchh
Q 003088 369 ARVTTLISEIQKSGDVILFIDEVHTL 394 (849)
Q Consensus 369 ~~l~~l~~~~~~~~~~ILfIDEi~~l 394 (849)
..+...+..+ .+..++|||....+
T Consensus 169 ~i~~~~l~~~--~~~D~vIIDT~G~~ 192 (432)
T 2v3c_C 169 DIVKEGMEKF--KKADVLIIDTAGRH 192 (432)
T ss_dssp TTHHHHHHTT--SSCSEEEEECCCSC
T ss_pred HHHHHHHHHh--hCCCEEEEcCCCCc
No 459
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.10 E-value=0.091 Score=55.62 Aligned_cols=28 Identities=32% Similarity=0.323 Sum_probs=23.6
Q ss_pred CCCCeEeCCCCChHHHHHHHHHHHhhhC
Q 003088 311 KNNPILLGESGVGKTAIAEGLAIRIVQA 338 (849)
Q Consensus 311 ~~niLL~GppGtGKT~la~~la~~l~~~ 338 (849)
..-++++|++|+||||++..||..+...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~ 125 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKK 125 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 3456889999999999999999988653
No 460
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=93.08 E-value=0.062 Score=55.36 Aligned_cols=32 Identities=28% Similarity=0.384 Sum_probs=25.6
Q ss_pred ceeecCCCCchHHHHHHHHHHhcCCCCceeEeecccc
Q 003088 662 MLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEY 698 (849)
Q Consensus 662 lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~ 698 (849)
+.|.|++|+|||++++.|+..+ + +..+|...+
T Consensus 51 i~l~G~~GsGKSTl~~~La~~l---g--~~~~d~d~~ 82 (250)
T 3nwj_A 51 MYLVGMMGSGKTTVGKIMARSL---G--YTFFDCDTL 82 (250)
T ss_dssp EEEECSTTSCHHHHHHHHHHHH---T--CEEEEHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhc---C--CcEEeCcHH
Confidence 9999999999999999999986 2 344555443
No 461
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=93.06 E-value=0.12 Score=57.21 Aligned_cols=37 Identities=24% Similarity=0.272 Sum_probs=26.6
Q ss_pred cceeecCCCCchHHHHHHHHHHhcC------CCCceeEeeccc
Q 003088 661 AMLFCGPTGVGKTELAKSLAACYFG------SESSMLRLDMSE 697 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~l~~------~~~~~i~i~~~~ 697 (849)
.++|+||||+|||++++.++-.... .+...+.++..+
T Consensus 180 i~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred EEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 3889999999999999977643311 234577777654
No 462
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.05 E-value=0.049 Score=56.13 Aligned_cols=45 Identities=18% Similarity=0.180 Sum_probs=29.7
Q ss_pred CCCeEeCCCCChHHHHHHHHHHHhhhCCCCccccCCeEEEeehhhhh
Q 003088 312 NNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM 358 (849)
Q Consensus 312 ~niLL~GppGtGKT~la~~la~~l~~~~~p~~~~~~~~~~l~~~~~~ 358 (849)
..|.|.|++|+||||+++.|+..+....+. ..+..+..++++.+.
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg~~~~d--~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLGQNEVD--YRQKQVVILSQDSFY 67 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTGGGSC--GGGCSEEEEEGGGGB
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhhhccc--ccCCceEEEecCccc
Confidence 357899999999999999999987321100 112344455555554
No 463
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.02 E-value=0.047 Score=54.75 Aligned_cols=22 Identities=32% Similarity=0.379 Sum_probs=20.0
Q ss_pred CCCeEeCCCCChHHHHHHHHHH
Q 003088 312 NNPILLGESGVGKTAIAEGLAI 333 (849)
Q Consensus 312 ~niLL~GppGtGKT~la~~la~ 333 (849)
..+.|.|++|+||||+++.|+.
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999987
No 464
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=93.00 E-value=0.031 Score=59.94 Aligned_cols=32 Identities=31% Similarity=0.540 Sum_probs=25.2
Q ss_pred cceeecCCCCchHHHHHHHHHHhcCCCCceeEeec
Q 003088 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDM 695 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~ 695 (849)
.++|.||+|+|||++|..||+.+ +..+|..|.
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~l---~~eiIs~Ds 73 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAHF---PLEVINSDK 73 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTS---CEEEEECCS
T ss_pred eEEEECCCCCCHHHHHHHHHHHC---CCcEEcccc
Confidence 38899999999999999999876 334554443
No 465
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.00 E-value=0.041 Score=54.67 Aligned_cols=22 Identities=41% Similarity=0.921 Sum_probs=20.8
Q ss_pred ceeecCCCCchHHHHHHHHHHh
Q 003088 662 MLFCGPTGVGKTELAKSLAACY 683 (849)
Q Consensus 662 lL~~Gp~GtGKt~lA~~la~~l 683 (849)
++|+||||+|||++++.|++.+
T Consensus 15 i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 15 LVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp EEEECCTTSCHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 8899999999999999999876
No 466
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.99 E-value=0.05 Score=54.78 Aligned_cols=26 Identities=27% Similarity=0.377 Sum_probs=22.7
Q ss_pred CCCCCeEeCCCCChHHHHHHHHHHHh
Q 003088 310 TKNNPILLGESGVGKTAIAEGLAIRI 335 (849)
Q Consensus 310 ~~~niLL~GppGtGKT~la~~la~~l 335 (849)
...-+.|+||+|+||||+++.|+..+
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34567899999999999999999876
No 467
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=92.91 E-value=0.045 Score=54.68 Aligned_cols=37 Identities=24% Similarity=0.325 Sum_probs=28.4
Q ss_pred cceeecCCCCchHHHHHHHHHHhc-CCCCceeEeeccc
Q 003088 661 AMLFCGPTGVGKTELAKSLAACYF-GSESSMLRLDMSE 697 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~l~-~~~~~~i~i~~~~ 697 (849)
.++|.|++|+|||++++.|+..+. ..+.+++.++...
T Consensus 27 ~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 27 TIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 64 (211)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence 388999999999999999999874 2234467776443
No 468
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=92.91 E-value=0.056 Score=55.06 Aligned_cols=26 Identities=19% Similarity=0.233 Sum_probs=23.0
Q ss_pred CCCCCeEeCCCCChHHHHHHHHHHHh
Q 003088 310 TKNNPILLGESGVGKTAIAEGLAIRI 335 (849)
Q Consensus 310 ~~~niLL~GppGtGKT~la~~la~~l 335 (849)
....+.|+|++|+||||+++.|+..+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34468899999999999999999988
No 469
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=92.89 E-value=0.2 Score=53.60 Aligned_cols=39 Identities=21% Similarity=0.261 Sum_probs=30.7
Q ss_pred CccceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccc
Q 003088 659 TAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSE 697 (849)
Q Consensus 659 ~~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~ 697 (849)
...++|+|++|+|||+++..||..+...+..+..+++.-
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~ 143 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADT 143 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 345889999999999999999988755556666666654
No 470
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=92.88 E-value=0.089 Score=59.08 Aligned_cols=28 Identities=25% Similarity=0.294 Sum_probs=23.7
Q ss_pred CCCCeEeCCCCChHHHHHHHHHHHhhhC
Q 003088 311 KNNPILLGESGVGKTAIAEGLAIRIVQA 338 (849)
Q Consensus 311 ~~niLL~GppGtGKT~la~~la~~l~~~ 338 (849)
..-++|.|+||+|||+++..+|..+...
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~~ 224 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSDN 224 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHHT
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHc
Confidence 3457999999999999999999887654
No 471
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=92.88 E-value=0.087 Score=56.83 Aligned_cols=23 Identities=26% Similarity=0.579 Sum_probs=21.5
Q ss_pred cceeecCCCCchHHHHHHHHHHh
Q 003088 661 AMLFCGPTGVGKTELAKSLAACY 683 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~l 683 (849)
+++|.|++|+|||+++++|+..+
T Consensus 26 ~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 26 CVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHh
Confidence 58999999999999999999876
No 472
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=92.88 E-value=0.64 Score=46.24 Aligned_cols=19 Identities=21% Similarity=0.142 Sum_probs=16.3
Q ss_pred CCCeEeCCCCChHHHHHHH
Q 003088 312 NNPILLGESGVGKTAIAEG 330 (849)
Q Consensus 312 ~niLL~GppGtGKT~la~~ 330 (849)
.++++.+|+|+|||..+-.
T Consensus 42 ~~~lv~a~TGsGKT~~~~~ 60 (219)
T 1q0u_A 42 ESMVGQSQTGTGKTHAYLL 60 (219)
T ss_dssp CCEEEECCSSHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHH
Confidence 6899999999999987543
No 473
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=92.84 E-value=0.18 Score=58.72 Aligned_cols=28 Identities=32% Similarity=0.329 Sum_probs=24.3
Q ss_pred CCCCeEeCCCCChHHHHHHHHHHHhhhC
Q 003088 311 KNNPILLGESGVGKTAIAEGLAIRIVQA 338 (849)
Q Consensus 311 ~~niLL~GppGtGKT~la~~la~~l~~~ 338 (849)
...|+|+|.||+||||+++.|++.+...
T Consensus 52 g~lIvLtGlsGSGKSTlAr~La~~L~~~ 79 (630)
T 1x6v_B 52 GCTVWLTGLSGAGKTTVSMALEEYLVCH 79 (630)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence 3458999999999999999999998654
No 474
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=92.84 E-value=0.72 Score=49.98 Aligned_cols=24 Identities=33% Similarity=0.266 Sum_probs=19.2
Q ss_pred CCCCCCeEeCCCCChHHHHHHHHH
Q 003088 309 RTKNNPILLGESGVGKTAIAEGLA 332 (849)
Q Consensus 309 ~~~~niLL~GppGtGKT~la~~la 332 (849)
....++++.+|+|+|||..+-..+
T Consensus 42 ~~~~~~lv~a~TGsGKT~~~~~~~ 65 (395)
T 3pey_A 42 NPPRNMIAQSQSGTGKTAAFSLTM 65 (395)
T ss_dssp SSCCCEEEECCTTSCHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHH
Confidence 345789999999999998766443
No 475
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.84 E-value=0.05 Score=51.89 Aligned_cols=27 Identities=30% Similarity=0.415 Sum_probs=23.4
Q ss_pred CCCCCCeEeCCCCChHHHHHHHHHHHh
Q 003088 309 RTKNNPILLGESGVGKTAIAEGLAIRI 335 (849)
Q Consensus 309 ~~~~niLL~GppGtGKT~la~~la~~l 335 (849)
....-+.|+||.|+||||+++.|+..+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 344457899999999999999999987
No 476
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=92.80 E-value=0.41 Score=48.16 Aligned_cols=25 Identities=24% Similarity=0.218 Sum_probs=18.6
Q ss_pred CCCCeEeCCCCChHHHHHH-HHHHHh
Q 003088 311 KNNPILLGESGVGKTAIAE-GLAIRI 335 (849)
Q Consensus 311 ~~niLL~GppGtGKT~la~-~la~~l 335 (849)
..++++.+|+|+|||...- .+...+
T Consensus 61 ~~~~l~~a~TGsGKT~~~~l~~l~~l 86 (230)
T 2oxc_A 61 GLDLIVQAKSGTGKTCVFSTIALDSL 86 (230)
T ss_dssp TCCEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEECCCCCcHHHHHHHHHHHHH
Confidence 4689999999999998743 334444
No 477
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=92.78 E-value=0.066 Score=53.46 Aligned_cols=41 Identities=17% Similarity=0.190 Sum_probs=26.8
Q ss_pred CCeEEEEcCcchhhhCCCCCCCCCCccHHHHHHHhhhhcCCCeEEEEccChHHHH
Q 003088 382 GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHR 436 (849)
Q Consensus 382 ~~~ILfIDEi~~l~~~~~~~~~~~~~~~~~~~~L~~~le~~~i~vI~at~~~~~~ 436 (849)
...+++|||++.+ +.++.+.+..+.. .++.||+++-..+|+
T Consensus 101 ~~dvV~IDEaQFf-------------~~~~v~~l~~la~-~gi~Vi~~GLd~DF~ 141 (219)
T 3e2i_A 101 NVDVIGIDEVQFF-------------DDEIVSIVEKLSA-DGHRVIVAGLDMDFR 141 (219)
T ss_dssp TCSEEEECCGGGS-------------CTHHHHHHHHHHH-TTCEEEEEEESBCTT
T ss_pred CCCEEEEechhcC-------------CHHHHHHHHHHHH-CCCEEEEeecccccc
Confidence 3469999999999 3345566665553 457777766544443
No 478
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=92.78 E-value=0.21 Score=58.96 Aligned_cols=41 Identities=20% Similarity=0.399 Sum_probs=28.0
Q ss_pred cHHHHHHHHHHHhcCCCCCCeEeCCCCChHHHHHHHHHHHhhh
Q 003088 295 RETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQ 337 (849)
Q Consensus 295 ~~~~i~~l~~~l~~~~~~niLL~GppGtGKT~la~~la~~l~~ 337 (849)
.+.+.+.+..++..+ .-.|+.||||||||+++-.+...+..
T Consensus 191 N~~Q~~AV~~al~~~--~~~lI~GPPGTGKT~ti~~~I~~l~~ 231 (646)
T 4b3f_X 191 DTSQKEAVLFALSQK--ELAIIHGPPGTGKTTTVVEIILQAVK 231 (646)
T ss_dssp CHHHHHHHHHHHHCS--SEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcCC--CceEEECCCCCCHHHHHHHHHHHHHh
Confidence 345666677666532 24689999999999876666555544
No 479
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=92.78 E-value=0.15 Score=57.78 Aligned_cols=28 Identities=21% Similarity=0.215 Sum_probs=24.4
Q ss_pred CCCCCeEeCCCCChHHHHHHHHHHHhhh
Q 003088 310 TKNNPILLGESGVGKTAIAEGLAIRIVQ 337 (849)
Q Consensus 310 ~~~niLL~GppGtGKT~la~~la~~l~~ 337 (849)
.+..++|+|.||+||||+++.|++.+..
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~ 65 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNF 65 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 3456899999999999999999998853
No 480
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=92.72 E-value=0.14 Score=49.54 Aligned_cols=25 Identities=32% Similarity=0.486 Sum_probs=21.3
Q ss_pred CCCCCeEeCCCCChHHHHHHHHHHH
Q 003088 310 TKNNPILLGESGVGKTAIAEGLAIR 334 (849)
Q Consensus 310 ~~~niLL~GppGtGKT~la~~la~~ 334 (849)
....++|+|++|+|||+++..+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcC
Confidence 3457899999999999999988754
No 481
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=92.71 E-value=0.46 Score=50.19 Aligned_cols=29 Identities=28% Similarity=0.308 Sum_probs=20.3
Q ss_pred hcCCCCCCeEeCCCCChHHHHHH-HHHHHh
Q 003088 307 CRRTKNNPILLGESGVGKTAIAE-GLAIRI 335 (849)
Q Consensus 307 ~~~~~~niLL~GppGtGKT~la~-~la~~l 335 (849)
......++++.+|+|+|||...- .+...+
T Consensus 127 l~~~~~~~l~~a~TGsGKT~a~~lp~l~~l 156 (300)
T 3fmo_B 127 LAEPPQNLIAQSQSGTGKTAAFVLAMLSQV 156 (300)
T ss_dssp TSSSCCCEEEECCTTSSHHHHHHHHHHHHC
T ss_pred HcCCCCeEEEECCCCCCccHHHHHHHHHhh
Confidence 33345799999999999997643 334443
No 482
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.70 E-value=0.059 Score=53.61 Aligned_cols=23 Identities=17% Similarity=0.351 Sum_probs=21.4
Q ss_pred cceeecCCCCchHHHHHHHHHHh
Q 003088 661 AMLFCGPTGVGKTELAKSLAACY 683 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~l 683 (849)
.++|.|++|+|||++|+.|++.+
T Consensus 11 ~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 11 LIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999999986
No 483
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=92.70 E-value=0.049 Score=54.23 Aligned_cols=26 Identities=35% Similarity=0.454 Sum_probs=22.5
Q ss_pred CCCCCeEeCCCCChHHHHHHHHHHHh
Q 003088 310 TKNNPILLGESGVGKTAIAEGLAIRI 335 (849)
Q Consensus 310 ~~~niLL~GppGtGKT~la~~la~~l 335 (849)
...-+.|+||+|+||||+++.|+..+
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34457899999999999999999876
No 484
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=92.68 E-value=0.19 Score=53.74 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=21.5
Q ss_pred cceeecCCCCchHHHHHHHHHHhc
Q 003088 661 AMLFCGPTGVGKTELAKSLAACYF 684 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~l~ 684 (849)
-+.|.||+|+|||++++.|+..+.
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 378999999999999999998873
No 485
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=92.66 E-value=0.048 Score=53.93 Aligned_cols=31 Identities=23% Similarity=0.371 Sum_probs=24.5
Q ss_pred ceeecCCCCchHHHHHHHHHHhcCCCCceeEeecccc
Q 003088 662 MLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEY 698 (849)
Q Consensus 662 lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~ 698 (849)
+.+.|++|+|||++++.|+. + + +..+++..+
T Consensus 4 i~i~G~~GsGKSTl~~~L~~-~---g--~~~i~~d~~ 34 (204)
T 2if2_A 4 IGLTGNIGCGKSTVAQMFRE-L---G--AYVLDADKL 34 (204)
T ss_dssp EEEEECTTSSHHHHHHHHHH-T---T--CEEEEHHHH
T ss_pred EEEECCCCcCHHHHHHHHHH-C---C--CEEEEccHH
Confidence 88999999999999999998 4 2 445555444
No 486
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=92.60 E-value=0.15 Score=56.64 Aligned_cols=89 Identities=19% Similarity=0.107 Sum_probs=49.7
Q ss_pred ceeecCCCCchHHHHHHHHHHhcCCCCceeEeecccccccccccccc--CCCCCccccccCcchhHHHHhCC------Ce
Q 003088 662 MLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLI--GSPPGYVGYEEGGLLTEAIRRRP------FT 733 (849)
Q Consensus 662 lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~--g~~~g~vg~~~~~~l~~~i~~~~------~~ 733 (849)
.++.|+||||||++...++.. ...+.+....-.......++. |.+... . ..-.-+..++.... ..
T Consensus 164 ~~I~G~aGsGKTt~I~~~~~~-----~~~lVlTpT~~aa~~l~~kl~~~~~~~~~-~-~~V~T~dsfL~~~~~~~~~~~d 236 (446)
T 3vkw_A 164 VLVDGVPGCGKTKEILSRVNF-----EEDLILVPGRQAAEMIRRRANASGIIVAT-K-DNVRTVDSFLMNYGKGARCQFK 236 (446)
T ss_dssp EEEEECTTSCHHHHHHHHCCT-----TTCEEEESCHHHHHHHHHHHTTTSCCCCC-T-TTEEEHHHHHHTTTSSCCCCCS
T ss_pred EEEEcCCCCCHHHHHHHHhcc-----CCeEEEeCCHHHHHHHHHHhhhcCccccc-c-ceEEEeHHhhcCCCCCCCCcCC
Confidence 688999999999998776632 223333332221111111221 110000 0 00112333433221 56
Q ss_pred EEEEeCccccCHHHHHHHHHHhhc
Q 003088 734 LLLLDEIEKAHPDIFNILLQVFED 757 (849)
Q Consensus 734 vl~lDEid~l~~~~~~~Ll~~le~ 757 (849)
+|+|||+-.+++.....++..+..
T Consensus 237 ~liiDE~sm~~~~~l~~l~~~~~~ 260 (446)
T 3vkw_A 237 RLFIDEGLMLHTGCVNFLVEMSLC 260 (446)
T ss_dssp EEEEETGGGSCHHHHHHHHHHTTC
T ss_pred EEEEeCcccCCHHHHHHHHHhCCC
Confidence 999999999999999998887754
No 487
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=92.59 E-value=0.063 Score=52.63 Aligned_cols=22 Identities=45% Similarity=0.816 Sum_probs=20.2
Q ss_pred ceeecCCCCchHHHHHHHHHHh
Q 003088 662 MLFCGPTGVGKTELAKSLAACY 683 (849)
Q Consensus 662 lL~~Gp~GtGKt~lA~~la~~l 683 (849)
++|.||+|+|||++++.|.+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 8999999999999999998764
No 488
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=92.56 E-value=0.5 Score=53.25 Aligned_cols=141 Identities=15% Similarity=0.153 Sum_probs=0.0
Q ss_pred cchhHHhhhhhhHHHHhhcCCCCccccHHHHHHHHHHHhcCCCCCC----------eEeCCCCChHHHHHHHHHHHhhhC
Q 003088 269 RASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP----------ILLGESGVGKTAIAEGLAIRIVQA 338 (849)
Q Consensus 269 ~~~~l~~~~~~l~~~~~~~~l~~iiG~~~~i~~l~~~l~~~~~~ni----------LL~GppGtGKT~la~~la~~l~~~ 338 (849)
....-.++...+.+++....+.+----...+...+.-+......++ +|+|++|+||||+++.|+..+...
T Consensus 241 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~ 320 (503)
T 2yhs_A 241 GVETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQ 320 (503)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCBGGGHHHHHHHHHHHHHHTTBCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhCCCCCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhc
Q ss_pred CCCccccCCeEEEe-----------ehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhhCCCCCCCCCCc
Q 003088 339 EVPVFLLSKRIMSL-----------DMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGT 407 (849)
Q Consensus 339 ~~p~~~~~~~~~~l-----------~~~~~~~~~~~~g~~e~~l~~l~~~~~~~~~~ILfIDEi~~l~~~~~~~~~~~~~ 407 (849)
.....+.+...+.. ...--.............+...+......+..+++||=+..+ ..
T Consensus 321 ~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~a~~~~~DvVLIDTaGrl-----------~~ 389 (503)
T 2yhs_A 321 GKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKARNIDVLIADTAGRL-----------QN 389 (503)
T ss_dssp TCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHHHHHTTCSEEEECCCCSC-----------CC
T ss_pred CCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHHHHhcCCCEEEEeCCCcc-----------ch
Q ss_pred cHHHHHHHhhhhc
Q 003088 408 GLDISNLLKPSLG 420 (849)
Q Consensus 408 ~~~~~~~L~~~le 420 (849)
.......|..+..
T Consensus 390 ~~~lm~EL~kiv~ 402 (503)
T 2yhs_A 390 KSHLMEELKKIVR 402 (503)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHH
No 489
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=92.55 E-value=0.14 Score=49.72 Aligned_cols=23 Identities=26% Similarity=0.214 Sum_probs=20.5
Q ss_pred CCCeEeCCCCChHHHHHHHHHHH
Q 003088 312 NNPILLGESGVGKTAIAEGLAIR 334 (849)
Q Consensus 312 ~niLL~GppGtGKT~la~~la~~ 334 (849)
.+++|+|++|+|||+|+..+...
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999998764
No 490
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=92.54 E-value=0.052 Score=52.74 Aligned_cols=22 Identities=23% Similarity=0.526 Sum_probs=20.5
Q ss_pred ceeecCCCCchHHHHHHHHHHh
Q 003088 662 MLFCGPTGVGKTELAKSLAACY 683 (849)
Q Consensus 662 lL~~Gp~GtGKt~lA~~la~~l 683 (849)
+.|.||+|+|||++++.|...+
T Consensus 8 i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 8 LVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhhC
Confidence 8899999999999999999875
No 491
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=92.53 E-value=0.23 Score=53.30 Aligned_cols=34 Identities=26% Similarity=0.289 Sum_probs=25.9
Q ss_pred ccceeecCCCCchHHHHHHHHHHhcCCCCceeEe
Q 003088 660 AAMLFCGPTGVGKTELAKSLAACYFGSESSMLRL 693 (849)
Q Consensus 660 ~~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i 693 (849)
..+.|.||+|+|||++++.|+..+...+..+...
T Consensus 130 ~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~ 163 (328)
T 3e70_C 130 YVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIA 163 (328)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEE
Confidence 3588999999999999999998874444444333
No 492
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=92.53 E-value=0.83 Score=48.90 Aligned_cols=25 Identities=28% Similarity=0.256 Sum_probs=19.8
Q ss_pred CCCCeEeCCCCChHHHHHHHHHHHh
Q 003088 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (849)
Q Consensus 311 ~~niLL~GppGtGKT~la~~la~~l 335 (849)
..++++.+|+|+|||..+-..+...
T Consensus 44 ~~~~l~~~~TGsGKT~~~~~~~~~~ 68 (367)
T 1hv8_A 44 EYNIVAQARTGSGKTASFAIPLIEL 68 (367)
T ss_dssp CSEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CCCEEEECCCCChHHHHHHHHHHHH
Confidence 3589999999999999876655443
No 493
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.52 E-value=0.027 Score=56.19 Aligned_cols=24 Identities=25% Similarity=0.320 Sum_probs=21.7
Q ss_pred CeEeCCCCChHHHHHHHHHHHhhh
Q 003088 314 PILLGESGVGKTAIAEGLAIRIVQ 337 (849)
Q Consensus 314 iLL~GppGtGKT~la~~la~~l~~ 337 (849)
++|.|++|+||||+++.|++.+..
T Consensus 3 I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHh
Confidence 679999999999999999998853
No 494
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=92.48 E-value=0.2 Score=58.09 Aligned_cols=26 Identities=35% Similarity=0.385 Sum_probs=23.1
Q ss_pred CCCeEeCCCCChHHHHHHHHHHHhhh
Q 003088 312 NNPILLGESGVGKTAIAEGLAIRIVQ 337 (849)
Q Consensus 312 ~niLL~GppGtGKT~la~~la~~l~~ 337 (849)
..++|.|.+|+||||+|+.|++++..
T Consensus 397 ~~I~l~GlsGSGKSTiA~~La~~L~~ 422 (573)
T 1m8p_A 397 FTIFLTGYMNSGKDAIARALQVTLNQ 422 (573)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred eEEEeecCCCCCHHHHHHHHHHHhcc
Confidence 45789999999999999999999853
No 495
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.47 E-value=0.071 Score=53.51 Aligned_cols=37 Identities=22% Similarity=0.244 Sum_probs=28.2
Q ss_pred HHHHHHHhcCCCCCCeEeCCCCChHHHHHHHHHHHhh
Q 003088 300 QRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIV 336 (849)
Q Consensus 300 ~~l~~~l~~~~~~niLL~GppGtGKT~la~~la~~l~ 336 (849)
..+...+.......++|+|.+|+|||+++..++....
T Consensus 27 ~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 27 DKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp HHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3344444445567789999999999999999998763
No 496
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.44 E-value=0.056 Score=54.57 Aligned_cols=26 Identities=23% Similarity=0.249 Sum_probs=22.4
Q ss_pred CCCCeEeCCCCChHHHHHHHHHHHhh
Q 003088 311 KNNPILLGESGVGKTAIAEGLAIRIV 336 (849)
Q Consensus 311 ~~niLL~GppGtGKT~la~~la~~l~ 336 (849)
..-++|+||+|+|||||++.|+..+.
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 34568999999999999999998763
No 497
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.42 E-value=0.059 Score=54.19 Aligned_cols=34 Identities=29% Similarity=0.472 Sum_probs=26.4
Q ss_pred cceeecCCCCchHHHHHHHHHHhcCCCCceeEeeccccc
Q 003088 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYM 699 (849)
Q Consensus 661 ~lL~~Gp~GtGKt~lA~~la~~l~~~~~~~i~i~~~~~~ 699 (849)
.+.|.||+|+|||++++.|+..+ + +..++...+.
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~---g--~~~~d~g~i~ 40 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEAL---Q--WHLLDSGAIY 40 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH---T--CEEEEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---C--CCcccCccee
Confidence 38899999999999999999876 2 4455555443
No 498
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=92.42 E-value=0.37 Score=48.76 Aligned_cols=20 Identities=35% Similarity=0.292 Sum_probs=16.5
Q ss_pred CCCCeEeCCCCChHHHHHHH
Q 003088 311 KNNPILLGESGVGKTAIAEG 330 (849)
Q Consensus 311 ~~niLL~GppGtGKT~la~~ 330 (849)
..++++.+|+|+|||..+-.
T Consensus 67 ~~~~li~apTGsGKT~~~~l 86 (237)
T 3bor_A 67 GYDVIAQAQSGTGKTATFAI 86 (237)
T ss_dssp TCCEEECCCSSHHHHHHHHH
T ss_pred CCCEEEECCCCCcHHHHHHH
Confidence 36899999999999977443
No 499
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=92.42 E-value=0.14 Score=49.64 Aligned_cols=25 Identities=32% Similarity=0.377 Sum_probs=21.7
Q ss_pred CCCCCeEeCCCCChHHHHHHHHHHH
Q 003088 310 TKNNPILLGESGVGKTAIAEGLAIR 334 (849)
Q Consensus 310 ~~~niLL~GppGtGKT~la~~la~~ 334 (849)
...+++++|++|+|||+++..+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567999999999999999998754
No 500
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=92.40 E-value=0.14 Score=54.04 Aligned_cols=27 Identities=37% Similarity=0.364 Sum_probs=23.2
Q ss_pred CCCeEeCCCCChHHHHHHHHHHHhhhC
Q 003088 312 NNPILLGESGVGKTAIAEGLAIRIVQA 338 (849)
Q Consensus 312 ~niLL~GppGtGKT~la~~la~~l~~~ 338 (849)
.-+.++|++|+||||++..||..+...
T Consensus 99 ~~i~i~g~~G~GKTT~~~~la~~~~~~ 125 (295)
T 1ls1_A 99 NLWFLVGLQGSGKTTTAAKLALYYKGK 125 (295)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 356788999999999999999988653
Done!