Query 003089
Match_columns 849
No_of_seqs 288 out of 772
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 12:54:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003089.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003089hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gia_A Uncharacterized protein 95.3 0.1 3.6E-06 56.1 12.2 44 272-315 125-171 (444)
2 4djk_A Probable glutamate/gamm 93.0 1.6 5.6E-05 47.8 15.6 48 272-319 130-181 (511)
3 3l1l_A Arginine/agmatine antip 93.0 0.71 2.4E-05 49.6 12.4 26 273-298 126-151 (445)
4 2a65_A Leutaa, Na(+):neurotran 23.2 8.7E+02 0.03 27.7 18.8 39 271-309 168-209 (519)
5 3tlw_A GLR4197 protein, GLIC; 20.4 1.8E+02 0.0061 30.4 7.1 46 467-518 201-246 (321)
6 2l6p_A PHAC1, PHAC2 and PHAD g 17.3 52 0.0018 30.8 1.9 21 819-841 30-50 (124)
7 3rhw_A Avermectin-sensitive gl 17.1 3.1E+02 0.011 29.0 8.1 62 453-518 198-263 (347)
8 3luu_A Uncharacterized protein 14.5 55 0.0019 29.2 1.2 17 818-834 34-50 (101)
9 2rdd_B UPF0092 membrane protei 14.1 2.1E+02 0.0072 21.4 4.1 31 556-586 1-31 (37)
10 2l6n_A Uncharacterized protein 12.7 79 0.0027 30.0 1.8 24 819-844 37-60 (132)
No 1
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=95.32 E-value=0.1 Score=56.14 Aligned_cols=44 Identities=16% Similarity=0.318 Sum_probs=27.2
Q ss_pred eehhHHHHHHHHhhhccccccccccc---hhhHHHHHHHHHHHHHHH
Q 003089 272 VVMISVAFLVILFSVQKFGTSKVGMA---VGPAYLYGFALLLALEFT 315 (849)
Q Consensus 272 Vv~is~~ILv~LF~iQ~~GT~kVg~~---FgPIml~WF~~l~~iGiy 315 (849)
...+++++++++..+.-+|....+.+ +..+.++=++.+.+.|+.
T Consensus 125 ~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~ii~~~~ 171 (444)
T 3gia_A 125 IAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIFAGLI 171 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577888888888888998766654 444444434444444443
No 2
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=93.04 E-value=1.6 Score=47.77 Aligned_cols=48 Identities=21% Similarity=0.094 Sum_probs=29.7
Q ss_pred eehhHHHHHHHHhhhccccccccccchhhH----HHHHHHHHHHHHHHHhhh
Q 003089 272 VVMISVAFLVILFSVQKFGTSKVGMAVGPA----YLYGFALLLALEFTTLSN 319 (849)
Q Consensus 272 Vv~is~~ILv~LF~iQ~~GT~kVg~~FgPI----ml~WF~~l~~iGiynI~~ 319 (849)
...+++++++++..+.-+|....+.+..-. +++-++.+.++|++.+..
T Consensus 130 ~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 181 (511)
T 4djk_A 130 KTIAALIILWALALTQFGGTKYTARIAKVGFFAGILLPAFILIALAAIYLHS 181 (511)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSSHHHHTHHHHHHTTHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456788888888899999988777654322 122244445556655433
No 3
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=92.95 E-value=0.71 Score=49.58 Aligned_cols=26 Identities=15% Similarity=0.204 Sum_probs=18.6
Q ss_pred ehhHHHHHHHHhhhccccccccccch
Q 003089 273 VMISVAFLVILFSVQKFGTSKVGMAV 298 (849)
Q Consensus 273 v~is~~ILv~LF~iQ~~GT~kVg~~F 298 (849)
..+++++++++..+--+|....+.+-
T Consensus 126 ~~~~~~~~~~~~~in~~g~~~~~~~~ 151 (445)
T 3l1l_A 126 TITCVVVLWIFVLLNIVGPKMITRVQ 151 (445)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHHH
Confidence 44677777777788888887776653
No 4
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=23.18 E-value=8.7e+02 Score=27.66 Aligned_cols=39 Identities=8% Similarity=0.166 Sum_probs=28.3
Q ss_pred eeehhHHHHHHHHhhhcc---ccccccccchhhHHHHHHHHH
Q 003089 271 QVVMISVAFLVILFSVQK---FGTSKVGMAVGPAYLYGFALL 309 (849)
Q Consensus 271 ~Vv~is~~ILv~LF~iQ~---~GT~kVg~~FgPIml~WF~~l 309 (849)
.++...++.++..|.+-+ .|++|+.+...|...+=++.+
T Consensus 168 ~~~~~~~~w~i~~~ii~~Gv~kgiek~~~~~mp~l~vlliiL 209 (519)
T 2a65_A 168 AYIVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFL 209 (519)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 345556666666666665 789999999999887776665
No 5
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 4f8h_A* 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ...
Probab=20.37 E-value=1.8e+02 Score=30.42 Aligned_cols=46 Identities=11% Similarity=0.301 Sum_probs=25.5
Q ss_pred cCCceEechhHHHHHHHHhheeeecCCchhhHhhhhhHhHHHHHHHHHHHHH
Q 003089 467 FMGQIYIPVINWFLLVVCLVFVCSISSNTEMGNAYGIAELGVMMMTTVLVTI 518 (849)
Q Consensus 467 ~~GQIYIP~vNw~Lmi~~l~v~~~F~~s~~l~~AYGiAV~~vM~iTT~L~~l 518 (849)
+.=|+|+|.+ +++++++ ++|= ..+.+.==+++++..+.+|+++..+
T Consensus 201 y~~~~~iP~~--li~~ls~---~sF~-p~~~~~Rv~l~it~lL~~t~~~~~~ 246 (321)
T 3tlw_A 201 YIPNIILPML--FILFISW---TAFW-STSYEANVTLVVSTLIAHIAFNILV 246 (321)
T ss_dssp HHHHTHHHHH--HHHHHHG---GGGG-CCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eehhHHHHHH--HHHHHhh---eeec-cCCCCCcEEEEhhHHHHHHHHHHHH
Confidence 4448999963 2222222 2222 4444555567777777777766654
No 6
>2l6p_A PHAC1, PHAC2 and PHAD genes; DUF971, structural genomics, PSI-biology, protein structure initiative, joint center for structural genomics; NMR {Pseudomonas aeruginosa}
Probab=17.30 E-value=52 Score=30.80 Aligned_cols=21 Identities=14% Similarity=0.148 Sum_probs=14.9
Q ss_pred HHHHHhhccCCCcccccCCCCee
Q 003089 819 YAFLRKNCRRGIANLSVPHSNLM 841 (849)
Q Consensus 819 Y~FLRkNcR~~~~~L~IPh~~Ll 841 (849)
|.|||.||+.+...-. .++++
T Consensus 30 ~~wLRd~Cpcaec~~~--~qr~l 50 (124)
T 2l6p_A 30 AEFLRVHSPSAEVQGH--GNPVL 50 (124)
T ss_dssp HHHHHHTCCCSSCCSC--CCCCC
T ss_pred HHHHHhcCCCcccCCC--Ccccc
Confidence 6899999998765433 45544
No 7
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A*
Probab=17.10 E-value=3.1e+02 Score=28.99 Aligned_cols=62 Identities=19% Similarity=0.276 Sum_probs=32.0
Q ss_pred CCCCceeEeecCCcc----CCceEechhHHHHHHHHhheeeecCCchhhHhhhhhHhHHHHHHHHHHHHH
Q 003089 453 GCFPRLKIIHTSRKF----MGQIYIPVINWFLLVVCLVFVCSISSNTEMGNAYGIAELGVMMMTTVLVTI 518 (849)
Q Consensus 453 g~fPrvkIvHTS~~~----~GQIYIP~vNw~Lmi~~l~v~~~F~~s~~l~~AYGiAV~~vM~iTT~L~~l 518 (849)
|-+|++++.-+=++. .=|+|+|.+ ++.++..+.-+=..++.+.==+++++..+.+|+++..+
T Consensus 198 ~~y~~l~~~~~l~R~~~~y~~~l~iP~~----li~~ls~~sF~lp~~~~~~Rv~lgit~lLt~tv~~~~~ 263 (347)
T 3rhw_A 198 GIYSCLRTTIQLKREFSFYLLQLYIPSC----MLVIVSWVSFWFDRTAIPARVTLGVTTLLTMTAQSAGI 263 (347)
T ss_dssp CEECEEEEEEEEEECSHHHHHHTHHHHH----HHHHHHHTTTTSCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceeEEEEEEEEEEEeeEEEEEeehhHH----HHHHHhheEEeccCCCCcceEEEEeehHHHHHHHHHHH
Confidence 445555544333333 348999976 22222222233333333444457777777777766654
No 8
>3luu_A Uncharacterized protein; AFE_2189, PFAM DUF971 family, structural genomics, joint CEN structural genomics, JCSG; HET: MSE; 1.93A {Acidithiobacillus ferrooxidans}
Probab=14.52 E-value=55 Score=29.18 Aligned_cols=17 Identities=18% Similarity=0.268 Sum_probs=10.4
Q ss_pred HHHHHHhhccCCCcccc
Q 003089 818 FYAFLRKNCRRGIANLS 834 (849)
Q Consensus 818 ~Y~FLRkNcR~~~~~L~ 834 (849)
=|.|||.||+.+...-.
T Consensus 34 ~~~wLRd~c~ca~c~~~ 50 (101)
T 3luu_A 34 TFEHLRVECPCAECKGH 50 (101)
T ss_dssp EHHHHHHTCCCC-----
T ss_pred CHHHHHhhCCChhhcCc
Confidence 37999999997665443
No 9
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=14.06 E-value=2.1e+02 Score=21.38 Aligned_cols=31 Identities=10% Similarity=0.214 Sum_probs=15.2
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003089 556 GSWIILVFAIIMFFIMFVWNYGSKLKYETEV 586 (849)
Q Consensus 556 GGW~pl~ia~i~~~iM~~W~~G~~~~~~~~~ 586 (849)
|||..++.-++++.+||..-.-..+|.+.+.
T Consensus 1 ~~~~~~l~~v~~~~ifYFl~iRPQ~Kr~K~~ 31 (37)
T 2rdd_B 1 SPMSLILMLVVFGLIFYFMILRPQQKRTKEH 31 (37)
T ss_dssp CCCHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 4555555555555666554433334433343
No 10
>2l6n_A Uncharacterized protein YP_001092504.1; PJ06155C, DUF971, structural genomics, PSI-biology, protein initiative; NMR {Shewanella loihica}
Probab=12.74 E-value=79 Score=29.96 Aligned_cols=24 Identities=8% Similarity=-0.011 Sum_probs=0.0
Q ss_pred HHHHHhhccCCCcccccCCCCeeEee
Q 003089 819 YAFLRKNCRRGIANLSVPHSNLMQVG 844 (849)
Q Consensus 819 Y~FLRkNcR~~~~~L~IPh~~LleVG 844 (849)
|.|||.||+.+...-.- ++++..|
T Consensus 37 ~~wLRd~Cpcaec~~~~--qr~l~~~ 60 (132)
T 2l6n_A 37 CELLRVYSPSAEVHGHG--NPVLVTH 60 (132)
T ss_dssp HHHHHHSCSCSSSSSSS--CCCCCCC
T ss_pred HHHHHhcCCCcccCCcc--ccccccC
Done!