Query 003089
Match_columns 849
No_of_seqs 288 out of 772
Neff 4.3
Searched_HMMs 13730
Date Mon Mar 25 12:55:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003089.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/003089hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2yvxa3 f.57.1.1 (A:276-448) M 35.6 11 0.00079 35.1 3.4 122 387-521 12-135 (173)
2 d2e74h1 f.23.27.1 (H:3-29) Pet 14.6 54 0.004 21.5 2.5 20 557-576 5-24 (27)
3 d1or7a2 a.177.1.1 (A:-1-111) S 12.2 58 0.0042 26.6 2.8 24 807-830 73-96 (113)
4 d2h8pc1 f.14.1.1 (C:22-78) Pot 9.7 42 0.0031 25.9 0.9 38 389-428 17-54 (57)
5 d1iray2 b.1.1.4 (Y:102-204) Ty 6.8 76 0.0056 25.9 1.4 26 655-680 57-82 (103)
6 d2a65a1 f.54.1.1 (A:5-513) Na( 6.1 4.5E+02 0.033 26.5 7.5 53 531-584 376-431 (509)
7 d1xioa_ f.13.1.1 (A:) Sensory 6.0 8.6E+02 0.062 21.8 11.6 23 470-492 67-94 (226)
8 d1f97a1 b.1.1.1 (A:27-128) Jun 5.7 1E+02 0.0075 23.9 1.5 24 658-681 67-90 (102)
9 d1krha2 c.25.1.2 (A:206-338) B 5.4 1.8E+02 0.013 23.9 3.0 38 439-476 17-54 (133)
10 d1f2qa2 b.1.1.4 (A:86-174) IgE 4.9 1.5E+02 0.011 23.0 2.0 29 654-682 47-75 (89)
No 1
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=35.56 E-value=11 Score=35.14 Aligned_cols=122 Identities=11% Similarity=0.115 Sum_probs=73.0
Q ss_pred HHHHHhhccc--hhhhccCCCcccCccccccCCcchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHcCCCCceeEeecC
Q 003089 387 PCLLLGYLGQ--AAYLMDNHAGAEQSFFSSIPSGAFWPVLLIANIAALIASRAMTTATFSCIKQSTALGCFPRLKIIHTS 464 (849)
Q Consensus 387 P~LlL~Y~GQ--aA~Ll~~p~~~~npFy~siP~~~~wP~~vlAtlAaIIASQA~ISg~FSii~Qai~Lg~fPrvkIvHTS 464 (849)
|-|+++.+|+ +|+++.+-|+.-+.+-. =..|.|+ ++-.+.-++||+.. ++-+++++|.+-+-. .-
T Consensus 12 pWL~i~l~~~~~~a~ii~~Fe~~l~~~~~---La~fiPl--i~~~gGN~G~Qs~t-----i~iR~La~g~i~~~~---~~ 78 (173)
T d2yvxa3 12 RWLVILILTGMVTSSILQGFESVLEAVTA---LAFYVPV--LLGTGGNTGNQSAT-----LIIRALATRDLDLRD---WR 78 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTTTTTTS---CCCCSHH--HHHHHHHHHHHHHH-----HHHHHHHTTCSCSSS---HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH--HhcCCchHHHHHHH-----HHHHHHhcccccchh---HH
Confidence 4444455444 56777665554332222 2356776 67788888999875 788999999643211 11
Q ss_pred CccCCceEechhHHHHHHHHhheeeecCCchhhHhhhhhHhHHHHHHHHHHHHHHHH
Q 003089 465 RKFMGQIYIPVINWFLLVVCLVFVCSISSNTEMGNAYGIAELGVMMMTTVLVTIVML 521 (849)
Q Consensus 465 ~~~~GQIYIP~vNw~Lmi~~l~v~~~F~~s~~l~~AYGiAV~~vM~iTT~L~~lV~~ 521 (849)
+...-++++-.+|=+.+...+.....++....++-+=|++...+|++.+++=+++=+
T Consensus 79 ~~l~kE~~vgll~G~~l~~i~~~~~~~~~~~~l~~vi~~sl~~~~~ia~~~G~~lPl 135 (173)
T d2yvxa3 79 RVFLKEMGVGLLLGLTLSFLLVGKVYWDGHPLLLPVVGVSLVLIVFFANLVGAMLPF 135 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223345666777776666555555556666666666677777776666665554433
No 2
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=14.59 E-value=54 Score=21.52 Aligned_cols=20 Identities=25% Similarity=0.672 Sum_probs=15.7
Q ss_pred chHHHHHHHHHHHHHHHHHH
Q 003089 557 SWIILVFAIIMFFIMFVWNY 576 (849)
Q Consensus 557 GW~pl~ia~i~~~iM~~W~~ 576 (849)
||+.|+.-+.-.+-|.+|-+
T Consensus 5 gwv~llvvftwsiamvvwgr 24 (27)
T d2e74h1 5 GWVALLVVFTWSIAMVVWGR 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred hHhHHHHHhhheeeeEEEcc
Confidence 78888887777788888854
No 3
>d1or7a2 a.177.1.1 (A:-1-111) SigmaE factor (RpoE) {Escherichia coli [TaxId: 562]}
Probab=12.19 E-value=58 Score=26.59 Aligned_cols=24 Identities=17% Similarity=0.216 Sum_probs=21.0
Q ss_pred CchHHHHHHHHHHHHHHhhccCCC
Q 003089 807 SWFIKKLVINYFYAFLRKNCRRGI 830 (849)
Q Consensus 807 SsflKKivIN~~Y~FLRkNcR~~~ 830 (849)
.+|+.+++.|.++.++|++-|.+.
T Consensus 73 ~~wl~~I~~n~~~d~~R~~~r~~~ 96 (113)
T d1or7a2 73 YTWLYRIAVNTAKNYLVAQGRRPP 96 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCC
Confidence 467999999999999999998654
No 4
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=9.74 E-value=42 Score=25.85 Aligned_cols=38 Identities=16% Similarity=0.201 Sum_probs=24.2
Q ss_pred HHHhhccchhhhccCCCcccCccccccCCcchHHHHHHHH
Q 003089 389 LLLGYLGQAAYLMDNHAGAEQSFFSSIPSGAFWPVLLIAN 428 (849)
Q Consensus 389 LlL~Y~GQaA~Ll~~p~~~~npFy~siP~~~~wP~~vlAt 428 (849)
+++--++=+.|+..+.. ++.-|.++|+.+.|-++-+.|
T Consensus 17 i~i~~~s~~~y~~E~~~--~~~~f~sip~a~WWaivT~TT 54 (57)
T d2h8pc1 17 IVLLAGSYLAVLAERGA--PGAQLITYPRALWWACETATT 54 (57)
T ss_dssp HHHHHHHHHHHHHHTTS--TTCCCCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCC--CCccccccchhhhhheeeeec
Confidence 33333455556676643 334599999999997765543
No 5
>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.83 E-value=76 Score=25.86 Aligned_cols=26 Identities=27% Similarity=0.516 Sum_probs=21.4
Q ss_pred CCcEEEEEecCCCCcEEEEEEEeeec
Q 003089 655 SERFLFRRVCPKSYHIFRCIARYGYK 680 (849)
Q Consensus 655 ~eR~~v~r~~~~~~~~yR~v~RyGy~ 680 (849)
+..+.|..+...+-|.|+|.+++.|.
T Consensus 57 ~~~L~I~~v~~~D~G~Y~C~a~n~~~ 82 (103)
T d1iray2 57 KDRLIVMNVAEKHRGNYTCHASYTYL 82 (103)
T ss_dssp TTEEEESSCCGGGCEEEEEEEEEEET
T ss_pred CCEEEEcccccccCcEEEEEEEECcC
Confidence 45678888888888999999998764
No 6
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Probab=6.11 E-value=4.5e+02 Score=26.54 Aligned_cols=53 Identities=26% Similarity=0.499 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccC---CchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003089 531 VLSFVVVFLGIELTFFSSVLWSVGD---GSWIILVFAIIMFFIMFVWNYGSKLKYET 584 (849)
Q Consensus 531 ~~~f~~~F~~ie~~f~sa~l~Kv~~---GGW~pl~ia~i~~~iM~~W~~G~~~~~~~ 584 (849)
.+...++|+..=+.+++.......| ++ +.+.+.+.+-++...|-||.++..+.
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-~~l~~~~l~e~i~v~w~yg~~r~~~d 431 (509)
T d2a65a1 376 LWTAAIVFFSAHLVMFLNKSLDEMDFWAGT-IGVVFFGLTELIIFFWIFGADKAWEE 431 (509)
T ss_dssp HHHHHHHHHHHHHHHHBTTHHHHHHHHTTT-HHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred hheeEEEEhhhhHHHHhcchHHHHHHHHHH-HHHHHHHHHHHheeeeEecHHHHHHH
Confidence 3333444444444444443332222 34 46666778888999999998776553
No 7
>d1xioa_ f.13.1.1 (A:) Sensory rhodopsin {Anabaena sp. PCC 7120 [TaxId: 103690]}
Probab=5.99 E-value=8.6e+02 Score=21.79 Aligned_cols=23 Identities=17% Similarity=0.362 Sum_probs=12.6
Q ss_pred ceEe-chhHHHH----HHHHhheeeecC
Q 003089 470 QIYI-PVINWFL----LVVCLVFVCSIS 492 (849)
Q Consensus 470 QIYI-P~vNw~L----mi~~l~v~~~F~ 492 (849)
|+|. =-++|++ |+..+..+.+..
T Consensus 67 ~v~~~RYiDW~lTtPlll~~l~l~~~~~ 94 (226)
T d1xioa_ 67 IAHYARYIDWMVTTPLLLLSLSWTAMQF 94 (226)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred eeeHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 4444 4578884 555555554443
No 8
>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.70 E-value=1e+02 Score=23.92 Aligned_cols=24 Identities=17% Similarity=0.246 Sum_probs=18.7
Q ss_pred EEEEEecCCCCcEEEEEEEeeecc
Q 003089 658 FLFRRVCPKSYHIFRCIARYGYKD 681 (849)
Q Consensus 658 ~~v~r~~~~~~~~yR~v~RyGy~d 681 (849)
+.+.++...+.|.|+|.++..+..
T Consensus 67 L~I~~v~~~D~G~Y~C~a~n~~g~ 90 (102)
T d1f97a1 67 ITFSSVTRKDNGEYTCMVSEEGGQ 90 (102)
T ss_dssp EEESCCCGGGCEEEEEEEEETTSS
T ss_pred EEEeECCccCCEEEEEEEEECCCC
Confidence 456677778889999999976644
No 9
>d1krha2 c.25.1.2 (A:206-338) Benzoate dioxygenase reductase {Acinetobacter sp. [TaxId: 472]}
Probab=5.37 E-value=1.8e+02 Score=23.93 Aligned_cols=38 Identities=5% Similarity=0.069 Sum_probs=23.7
Q ss_pred hhhhhhHHHHHHHcCCCCceeEeecCCccCCceEechh
Q 003089 439 TTATFSCIKQSTALGCFPRLKIIHTSRKFMGQIYIPVI 476 (849)
Q Consensus 439 ISg~FSii~Qai~Lg~fPrvkIvHTS~~~~GQIYIP~v 476 (849)
||-..|+++++.+.+.-+++.++|..+...--+|--++
T Consensus 17 ItP~~s~l~~~~~~~~~~~i~l~~~~r~~~d~~~~~el 54 (133)
T d1krha2 17 IAPFLSMLQVLEQKGSEHPVRLVFGVTQDCDLVALEQL 54 (133)
T ss_dssp HHHHHHHHHHHHHHCCSSCEEEEEEESSGGGCCCHHHH
T ss_pred HHHHHHHHHHHHHcCCCCceEEEEeecchhHHHHHHHH
Confidence 44556667777777776667777776665544454443
No 10
>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.91 E-value=1.5e+02 Score=22.96 Aligned_cols=29 Identities=7% Similarity=0.128 Sum_probs=22.6
Q ss_pred CCCcEEEEEecCCCCcEEEEEEEeeeccc
Q 003089 654 QSERFLFRRVCPKSYHIFRCIARYGYKDV 682 (849)
Q Consensus 654 ~~eR~~v~r~~~~~~~~yR~v~RyGy~d~ 682 (849)
....+.+..+...+-|.|+|.++.++.+.
T Consensus 47 ~~~~l~i~~~~~~dsG~Y~C~a~n~~~~~ 75 (89)
T d1f2qa2 47 ENHNISITNATVEDSGTYYCTGKVWQLDY 75 (89)
T ss_dssp CSSEEEESSCCGGGCEEEEEEEEETTEEE
T ss_pred ccceEEEeeeeeecCcEEEEEEEeCCCCe
Confidence 44568888888778899999999887543
Done!