BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003090
(848 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 70/152 (46%), Gaps = 21/152 (13%)
Query: 322 NLRTLRLHDRRIQG-DLSLIGELSGLEILDLSESDVSEIPV-SFGRLSHLRLLDLTGCYI 379
N R L LH+ +IQ ++ L LEIL LS + + I + +F L++L L+L
Sbjct: 65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR- 123
Query: 380 LELIPRGVLSRLRKLEELYMSH----SFRHWQFXXXXXXXXXXNAKFIELGALSRLTSLH 435
L IP G L KL+EL++ + S + F + ++LG L RL+
Sbjct: 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSL------RRLDLGELKRLS--- 174
Query: 436 IHIPEGKIMPSDMSFQNLTSFSIAIGDLEERP 467
+I EG NL ++A+ +L E P
Sbjct: 175 -YISEGAF----EGLSNLRYLNLAMCNLREIP 201
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 35.8 bits (81), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 61/234 (26%), Positives = 102/234 (43%), Gaps = 32/234 (13%)
Query: 322 NLRTLRLHDRRIQG-DLSLIGELSGLEILDLSESDVSEIPV-SFGRLSHLRLLDLTGCYI 379
N R L L + IQ L LE+L L + + +I V +F L+ L L+L +
Sbjct: 76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW- 134
Query: 380 LELIPRGVLSRLRKLEELYMSH----SFRHWQFXXXXXXXXXXNAKFIELGALSRLTSLH 435
L +IP G L KL EL++ + S + F ++LG L +L
Sbjct: 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMR------LDLGELKKLE--- 185
Query: 436 IHIPEGKIMPSDMSFQNLTSFSIAIGDLEERP-LSDFIGL-----FLQKFKK-RCSRAMG 488
+I EG NL ++ + ++++ P L+ +GL F + R G
Sbjct: 186 -YISEGAFE----GLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHG 240
Query: 489 LSQDMRISALHSWIKNLLLRSE---ILALAEVNYFENIVSDLANDGFNELMFLV 539
LS ++ ++S + L+ R+ + +L E+N N +S L +D F L +LV
Sbjct: 241 LSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLV 293
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 35.4 bits (80), Expect = 0.15, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Query: 322 NLRTLRLHDRRIQGDLSLIGELSGLEILDLSESDVSEIPVS-FGRLSHLRLLDLTGCYIL 380
N+R L L ++ D+S + EL+ L L L+ + + +P F +L++L+ L L L
Sbjct: 64 NVRYLALGGNKLH-DISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ-L 121
Query: 381 ELIPRGVLSRLRKLEELYMSHS 402
+ +P GV +L L LY+ H+
Sbjct: 122 QSLPDGVFDKLTNLTYLYLYHN 143
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 72/175 (41%), Gaps = 22/175 (12%)
Query: 231 GWLDLTGISLMFNDIHEVPDEL--ECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGG 288
G L + L N + VP + KL+ L+L+ N +IP F + L+ LDLG
Sbjct: 81 GLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGE 140
Query: 289 IXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINLRTLRLHDRRIQGDLSLIGELSGLEI 348
+ +NLR L L ++ D+ + L LE
Sbjct: 141 LKRLEYISEAAFEGL-----------------VNLRYLNLGMCNLK-DIPNLTALVRLEE 182
Query: 349 LDLSESDVSEI-PVSFGRLSHLRLLDLTGCYILELIPRGVLSRLRKLEELYMSHS 402
L+LS + + I P SF L+ LR L L + I R L+ LEEL +SH+
Sbjct: 183 LELSGNRLDLIRPGSFQGLTSLRKLWLMHAQV-ATIERNAFDDLKSLEELNLSHN 236
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 72/175 (41%), Gaps = 22/175 (12%)
Query: 231 GWLDLTGISLMFNDIHEVPDEL--ECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGG 288
G L + L N + VP + KL+ L+L+ N +IP F + L+ LDLG
Sbjct: 81 GLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGE 140
Query: 289 IXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINLRTLRLHDRRIQGDLSLIGELSGLEI 348
+ +NLR L L ++ D+ + L LE
Sbjct: 141 LKRLEYISEAAFEGL-----------------VNLRYLNLGMCNLK-DIPNLTALVRLEE 182
Query: 349 LDLSESDVSEI-PVSFGRLSHLRLLDLTGCYILELIPRGVLSRLRKLEELYMSHS 402
L+LS + + I P SF L+ LR L L + I R L+ LEEL +SH+
Sbjct: 183 LELSGNRLDLIRPGSFQGLTSLRKLWLMHAQV-ATIERNAFDDLKSLEELNLSHN 236
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 32.7 bits (73), Expect = 0.82, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Query: 322 NLRTLRLHDRRIQGDLSLIGELSGLEILDLSESDVSEIPVS-FGRLSHLRLLDLTGCYIL 380
N+R L L ++ D+S + EL+ L L L+ + + +P F +L++L+ L L L
Sbjct: 64 NVRYLALGGNKLH-DISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ-L 121
Query: 381 ELIPRGVLSRLRKLEELYMSHS 402
+ +P GV +L L L ++H+
Sbjct: 122 QSLPDGVFDKLTNLTYLNLAHN 143
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 32.7 bits (73), Expect = 0.97, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
Query: 321 INLRTLRLHDRRIQGDLSLIGELSGLEILDLSESDVSEIPVSFGRLSHLRLLDLTGCYIL 380
+NL L ++ G L ++G LDLS + + +P+ L L +LD++ +
Sbjct: 61 LNLDRCELTKLQVDGTLPVLG------TLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT 114
Query: 381 ELIPRGVLSRLRKLEELYM 399
L P G L L +L+ELY+
Sbjct: 115 SL-PLGALRGLGELQELYL 132
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 32.3 bits (72), Expect = 1.0, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
Query: 321 INLRTLRLHDRRIQGDLSLIGELSGLEILDLSESDVSEIPVSFGRLSHLRLLDLTGCYIL 380
+NL L ++ G L ++G LDLS + + +P+ L L +LD++ +
Sbjct: 60 LNLDRCELTKLQVDGTLPVLG------TLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT 113
Query: 381 ELIPRGVLSRLRKLEELYM 399
L P G L L +L+ELY+
Sbjct: 114 SL-PLGALRGLGELQELYL 131
>pdb|1X9P|A Chain A, The Crystal Structure Of Human Adenovirus 2 Penton Base
pdb|1X9T|A Chain A, The Crystal Structure Of Human Adenovirus 2 Penton Base In
Complex With An Ad2 N-Terminal Fibre Peptide
pdb|2C9G|A Chain A, The Quasi-Atomic Model Of The Adenovirus Type 3 Penton
Base Dodecahedron
pdb|2C9G|B Chain B, The Quasi-Atomic Model Of The Adenovirus Type 3 Penton
Base Dodecahedron
pdb|2C9G|C Chain C, The Quasi-Atomic Model Of The Adenovirus Type 3 Penton
Base Dodecahedron
pdb|2C9G|D Chain D, The Quasi-Atomic Model Of The Adenovirus Type 3 Penton
Base Dodecahedron
pdb|2C9G|E Chain E, The Quasi-Atomic Model Of The Adenovirus Type 3 Penton
Base Dodecahedron
pdb|2C9F|A Chain A, The Quasi-Atomic Model Of The Adenovirus Type 3 Penton
Dodecahedron
pdb|2C9F|B Chain B, The Quasi-Atomic Model Of The Adenovirus Type 3 Penton
Dodecahedron
pdb|2C9F|C Chain C, The Quasi-Atomic Model Of The Adenovirus Type 3 Penton
Dodecahedron
pdb|2C9F|D Chain D, The Quasi-Atomic Model Of The Adenovirus Type 3 Penton
Dodecahedron
pdb|2C9F|E Chain E, The Quasi-Atomic Model Of The Adenovirus Type 3 Penton
Dodecahedron
pdb|2BLD|A Chain A, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 1)
pdb|2BLD|B Chain B, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 1)
pdb|2BLD|C Chain C, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 1)
pdb|2BLD|D Chain D, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 1)
pdb|2BLD|E Chain E, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 1)
Length = 523
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 9/71 (12%)
Query: 474 LFLQKFKKRCSRAMGLSQDMRISALHSWIKNLLLRSEILALAEVNYFENIVSDLANDGFN 533
+F KFK R + L++D ++ + W++ L E NY E + DL N+
Sbjct: 90 MFTNKFKARVMVSRSLTKDKQVELKYEWVE--------FTLPEGNYSETMTIDLMNNAIV 141
Query: 534 ELMFLVIFRCN 544
E +L + R N
Sbjct: 142 E-HYLKVGRQN 151
>pdb|2C6S|A Chain A, Human Adenovirus Penton Base 2 12 Chimera
pdb|2C6S|B Chain B, Human Adenovirus Penton Base 2 12 Chimera
pdb|2C6S|C Chain C, Human Adenovirus Penton Base 2 12 Chimera
pdb|2C6S|D Chain D, Human Adenovirus Penton Base 2 12 Chimera
pdb|2C6S|E Chain E, Human Adenovirus Penton Base 2 12 Chimera
pdb|2C6S|F Chain F, Human Adenovirus Penton Base 2 12 Chimera
pdb|2C6S|G Chain G, Human Adenovirus Penton Base 2 12 Chimera
pdb|2C6S|H Chain H, Human Adenovirus Penton Base 2 12 Chimera
pdb|2C6S|I Chain I, Human Adenovirus Penton Base 2 12 Chimera
pdb|2C6S|J Chain J, Human Adenovirus Penton Base 2 12 Chimera
pdb|2C6S|K Chain K, Human Adenovirus Penton Base 2 12 Chimera
pdb|2C6S|L Chain L, Human Adenovirus Penton Base 2 12 Chimera
pdb|2C6S|M Chain M, Human Adenovirus Penton Base 2 12 Chimera
pdb|2C6S|N Chain N, Human Adenovirus Penton Base 2 12 Chimera
pdb|2C6S|O Chain O, Human Adenovirus Penton Base 2 12 Chimera
Length = 523
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 9/71 (12%)
Query: 474 LFLQKFKKRCSRAMGLSQDMRISALHSWIKNLLLRSEILALAEVNYFENIVSDLANDGFN 533
+F KFK R + L++D ++ + W++ L E NY E + DL N+
Sbjct: 90 MFTNKFKARVMVSRSLTKDKQVELKYEWVE--------FTLPEGNYSETMTIDLMNNAIV 141
Query: 534 ELMFLVIFRCN 544
E +L + R N
Sbjct: 142 E-HYLKVGRQN 151
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
Query: 321 INLRTLRLHDRRIQGDLSLIGELSGLEILDLSESDVSEIPVSFGRLSHLRLLDLTGCYIL 380
+NL L ++ G L ++G LDLS + + +P+ L L +LD++ +
Sbjct: 60 LNLDRCELTKLQVDGTLPVLG------TLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT 113
Query: 381 ELIPRGVLSRLRKLEELYM 399
L P G L L +L+ELY+
Sbjct: 114 SL-PLGALRGLGELQELYL 131
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
Query: 321 INLRTLRLHDRRIQGDLSLIGELSGLEILDLSESDVSEIPVSFGRLSHLRLLDLTGCYIL 380
+NL L ++ G L ++G LDLS + + +P+ L L +LD++ +
Sbjct: 60 LNLDRCELTKLQVDGTLPVLG------TLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT 113
Query: 381 ELIPRGVLSRLRKLEELYM 399
L P G L L +L+ELY+
Sbjct: 114 SL-PLGALRGLGELQELYL 131
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 335 GDLSLIGELSGLEILDLSESDVSEIPVSFGRLSHLRLLDLTGCYILELIPRGVLSRLRKL 394
D++ + L LE L L + +++I V RL+ L L L I ++P L+RL KL
Sbjct: 123 SDINGLVHLPQLESLYLGNNKITDITV-LSRLTKLDTLSLEDNQIRRIVP---LARLTKL 178
Query: 395 EELYMS 400
+ LY+S
Sbjct: 179 QNLYLS 184
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 21/106 (19%)
Query: 180 ITGICGMGGVGKTTLVKEIQ--KQAKEMKMFDDVAMAVVSQTPSITKIQYEIAGWLDLTG 237
+ GI G G+GKTT VK + ++ E K+ D+ +A P K +YE
Sbjct: 370 VIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAY---KPQYIKAEYE--------- 417
Query: 238 ISLMFNDIHEVPDELECPKLQALFLQEN--SPLAIPDRFFQGMKDL 281
++E+ +++ KL + F + PL I D + + ++DL
Sbjct: 418 -----GTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDL 458
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 21/106 (19%)
Query: 180 ITGICGMGGVGKTTLVKEIQ--KQAKEMKMFDDVAMAVVSQTPSITKIQYEIAGWLDLTG 237
+ GI G G+GKTT VK + ++ E K+ D+ +A P K +YE
Sbjct: 384 VIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAY---KPQYIKAEYE--------- 431
Query: 238 ISLMFNDIHEVPDELECPKLQALFLQEN--SPLAIPDRFFQGMKDL 281
++E+ +++ KL + F + PL I D + + ++DL
Sbjct: 432 -----GTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDL 472
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 232 WLDLTGISLMFNDIHEVPDE--LECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDL 286
W +LT + L +N++H+V + P L+ L L+ N+ + R F G+ +L+ L L
Sbjct: 247 WTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSL 303
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 31.2 bits (69), Expect = 2.2, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 235 LTGISLMFNDIHEVPDEL--ECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDL 286
LT +SL N I +PD + + KL L+L EN ++P+ F + L+ L L
Sbjct: 54 LTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 31.2 bits (69), Expect = 2.3, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 343 LSGLEILDLSESDVSEIPVS-FGRLSHLRLLDLTGCYILELIPRGVLSRLRKLEELYM 399
L L+ L + + ++ IP F +L+ L LDL + L+ IPRG L+ L +Y+
Sbjct: 56 LVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH-LKSIPRGAFDNLKSLTHIYL 112
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Query: 321 INLRTLRLHDRRIQGDLSLIGELSGLEILDLSESDVSEIPVSFGRLSHLRLLDLTGCYIL 380
+NL++LRL I+ + I L L+ L + S +S + + L L LDL GC L
Sbjct: 183 VNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTAL 242
Query: 381 ELIP-----RGVLSRL 391
P R L RL
Sbjct: 243 RNYPPIFGGRAPLKRL 258
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 342 ELSGLEILDLSESDVSEIPVSFGRLSHLRLLDLTGCYILELIPRGVLS 389
+ +GLE L L+ + + +P S L+ LR L + C L +P + S
Sbjct: 125 QFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLAS 172
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 330 DRRIQGDLSLIGELSGLEILDLSESDVSEIPVSFGRLSHLRLLDLTGCYILELIPRGVLS 389
DR L + G L L LDLS + + +P+ L L +LD++ + L P G L
Sbjct: 63 DRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL-PLGALR 121
Query: 390 RLRKLEELYM 399
L +L+ELY+
Sbjct: 122 GLGELQELYL 131
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 330 DRRIQGDLSLIGELSGLEILDLSESDVSEIPVSFGRLSHLRLLDLTGCYILELIPRGVLS 389
DR L + G L L LDLS + + +P+ L L +LD++ + L P G L
Sbjct: 63 DRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL-PLGALR 121
Query: 390 RLRKLEELYM 399
L +L+ELY+
Sbjct: 122 GLGELQELYL 131
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 330 DRRIQGDLSLIGELSGLEILDLSESDVSEIPVSFGRLSHLRLLDLTGCYILELIPRGVLS 389
DR L + G L L LDLS + + +P+ L L +LD++ + L P G L
Sbjct: 63 DRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL-PLGALR 121
Query: 390 RLRKLEELYM 399
L +L+ELY+
Sbjct: 122 GLGELQELYL 131
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
Query: 321 INLRTLRLHDRRIQGDLSLIGELSGLEILDLSESDVSEIPVSFGRLSHLRLLDLTGCYIL 380
+NL L ++ G L ++G LDLS + + +P+ L L +LD++ +
Sbjct: 60 LNLDRCELTKLQVDGTLPVLG------TLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT 113
Query: 381 ELIPRGVLSRLRKLEELYM 399
L P G L L +L+ELY+
Sbjct: 114 SL-PLGALRGLGELQELYL 131
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
Query: 321 INLRTLRLHDRRIQGDLSLIGELSGLEILDLSESDVSEIPVSFGRLSHLRLLDLTGCYIL 380
+NL L ++ G L ++G LDLS + + +P+ L L +LD++ +
Sbjct: 60 LNLDRCELTKLQVDGTLPVLG------TLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT 113
Query: 381 ELIPRGVLSRLRKLEELYM 399
L P G L L +L+ELY+
Sbjct: 114 SL-PLGALRGLGELQELYL 131
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
Query: 321 INLRTLRLHDRRIQGDLSLIGELSGLEILDLSESDVSEIPVSFGRLSHLRLLDLTGCYIL 380
+NL L ++ G L ++G LDLS + + +P+ L L +LD++ +
Sbjct: 60 LNLDRCELTKLQVDGTLPVLG------TLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT 113
Query: 381 ELIPRGVLSRLRKLEELYM 399
L P G L L +L+ELY+
Sbjct: 114 SL-PLGALRGLGELQELYL 131
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 49/113 (43%), Gaps = 26/113 (23%)
Query: 180 ITGICGMGGVGKTTLVKEIQ--KQAKEMKMFDDVAMAVVSQTPSITKIQYEIAGWLDLTG 237
+ GI G G+GKTT VK + ++ E K+ D+ +A P K YE
Sbjct: 314 VIGIVGPNGIGKTTFVKXLAGVEEPTEGKIEWDLTVAY---KPQYIKADYE--------- 361
Query: 238 ISLMFNDIHEVPDELECPKLQALFLQEN--SPLAIPDRFFQGMKDLQVLDLGG 288
++E+ +++ KL + F + PL I D + D +V +L G
Sbjct: 362 -----GTVYELLSKIDASKLNSNFYKTELLKPLGIIDLY-----DREVNELSG 404
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,625,295
Number of Sequences: 62578
Number of extensions: 756992
Number of successful extensions: 2169
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 2143
Number of HSP's gapped (non-prelim): 59
length of query: 848
length of database: 14,973,337
effective HSP length: 107
effective length of query: 741
effective length of database: 8,277,491
effective search space: 6133620831
effective search space used: 6133620831
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)