Query 003090
Match_columns 848
No_of_seqs 549 out of 4846
Neff 10.2
Searched_HMMs 46136
Date Thu Mar 28 16:49:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003090.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003090hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 2.7E-39 5.8E-44 372.6 27.3 365 40-439 24-678 (889)
2 PLN03210 Resistant to P. syrin 100.0 1.1E-31 2.5E-36 327.9 35.4 390 270-809 549-945 (1153)
3 PLN00113 leucine-rich repeat r 100.0 8.3E-32 1.8E-36 330.4 25.5 482 226-807 86-584 (968)
4 PLN00113 leucine-rich repeat r 100.0 7.1E-31 1.5E-35 322.1 25.4 482 208-774 92-588 (968)
5 PLN03210 Resistant to P. syrin 99.9 7.2E-23 1.6E-27 250.8 23.3 353 247-689 579-944 (1153)
6 KOG0472 Leucine-rich repeat pr 99.9 6.6E-26 1.4E-30 224.0 -14.2 453 220-768 78-539 (565)
7 KOG4194 Membrane glycoprotein 99.9 6.9E-23 1.5E-27 211.8 3.4 355 237-657 82-448 (873)
8 KOG4194 Membrane glycoprotein 99.9 2.5E-22 5.4E-27 207.7 6.2 368 237-691 56-431 (873)
9 KOG0444 Cytoskeletal regulator 99.9 1.8E-23 4E-28 217.2 -2.3 343 209-632 32-379 (1255)
10 KOG0444 Cytoskeletal regulator 99.9 1.3E-23 2.8E-28 218.3 -3.8 369 220-683 19-394 (1255)
11 KOG0472 Leucine-rich repeat pr 99.8 1.1E-23 2.5E-28 208.3 -11.8 463 221-805 56-539 (565)
12 KOG0618 Serine/threonine phosp 99.8 1.4E-22 3E-27 221.1 -7.4 443 228-769 40-488 (1081)
13 KOG0618 Serine/threonine phosp 99.7 2.4E-19 5.3E-24 196.0 -0.1 413 238-773 3-422 (1081)
14 KOG0617 Ras suppressor protein 99.6 1.6E-17 3.6E-22 145.7 -4.0 165 247-447 25-191 (264)
15 KOG0617 Ras suppressor protein 99.6 8.9E-17 1.9E-21 141.1 -2.9 150 235-406 35-187 (264)
16 PRK15370 E3 ubiquitin-protein 99.4 1.3E-13 2.8E-18 158.1 8.3 176 235-460 180-355 (754)
17 PRK15387 E3 ubiquitin-protein 99.4 1.1E-12 2.4E-17 149.3 14.8 168 235-459 203-370 (788)
18 PRK15370 E3 ubiquitin-protein 99.4 1E-12 2.3E-17 150.7 11.7 191 220-462 188-378 (754)
19 PRK15387 E3 ubiquitin-protein 99.4 1.9E-12 4E-17 147.6 11.3 188 211-459 203-390 (788)
20 KOG4237 Extracellular matrix p 99.3 5.6E-13 1.2E-17 133.1 1.1 141 241-401 54-197 (498)
21 KOG4658 Apoptotic ATPase [Sign 99.2 1.1E-11 2.4E-16 144.6 7.2 325 235-632 525-864 (889)
22 KOG4237 Extracellular matrix p 99.2 1.3E-12 2.8E-17 130.5 -2.9 137 221-377 57-198 (498)
23 cd00116 LRR_RI Leucine-rich re 99.2 6.1E-11 1.3E-15 126.7 8.3 89 316-405 76-178 (319)
24 KOG4341 F-box protein containi 99.1 1.2E-12 2.6E-17 131.9 -5.5 268 502-824 185-458 (483)
25 KOG0532 Leucine-rich repeat (L 99.1 1.2E-11 2.6E-16 129.4 -1.8 175 236-448 78-253 (722)
26 KOG0532 Leucine-rich repeat (L 99.1 1.4E-11 3E-16 128.9 -2.0 160 223-406 88-248 (722)
27 KOG4341 F-box protein containi 99.0 4.1E-12 8.8E-17 128.2 -7.4 251 508-809 139-416 (483)
28 cd00116 LRR_RI Leucine-rich re 99.0 4.4E-10 9.5E-15 120.0 4.8 15 363-377 217-231 (319)
29 PF00931 NB-ARC: NB-ARC domain 98.9 2.9E-09 6.4E-14 111.6 8.4 75 162-236 1-77 (287)
30 PF14580 LRR_9: Leucine-rich r 98.9 3.3E-09 7.1E-14 99.0 6.0 137 241-398 5-146 (175)
31 PF14580 LRR_9: Leucine-rich r 98.8 6.2E-09 1.3E-13 97.2 6.3 123 233-376 19-149 (175)
32 KOG1909 Ran GTPase-activating 98.7 1.3E-08 2.8E-13 101.1 6.2 257 162-442 15-311 (382)
33 KOG1259 Nischarin, modulator o 98.7 2.5E-09 5.3E-14 103.3 -0.1 134 278-446 283-416 (490)
34 KOG3207 Beta-tubulin folding c 98.7 7.9E-09 1.7E-13 105.4 3.3 207 233-463 121-338 (505)
35 KOG1259 Nischarin, modulator o 98.7 3.9E-09 8.5E-14 101.9 -0.3 130 255-406 284-413 (490)
36 COG4886 Leucine-rich repeat (L 98.7 2.3E-08 5.1E-13 109.9 5.7 150 234-405 117-268 (394)
37 COG4886 Leucine-rich repeat (L 98.6 3E-08 6.5E-13 109.0 6.1 191 237-463 97-289 (394)
38 KOG3207 Beta-tubulin folding c 98.5 4.1E-08 8.9E-13 100.3 1.1 152 276-459 118-279 (505)
39 KOG2120 SCF ubiquitin ligase, 98.4 2E-08 4.4E-13 97.2 -1.6 186 345-601 186-375 (419)
40 PLN03150 hypothetical protein; 98.4 1.1E-06 2.4E-11 101.2 9.6 106 322-441 419-527 (623)
41 KOG1909 Ran GTPase-activating 98.3 2E-07 4.4E-12 92.8 1.9 114 319-442 90-226 (382)
42 PRK15386 type III secretion pr 98.3 2.5E-06 5.4E-11 89.6 8.6 166 560-809 50-215 (426)
43 KOG2120 SCF ubiquitin ligase, 98.2 7.3E-08 1.6E-12 93.4 -3.2 16 530-545 257-272 (419)
44 PLN03150 hypothetical protein; 98.2 2.9E-06 6.3E-11 97.8 9.1 104 345-462 419-526 (623)
45 PF13855 LRR_8: Leucine rich r 98.1 1.2E-06 2.6E-11 66.9 2.2 60 255-332 1-60 (61)
46 PRK15386 type III secretion pr 98.1 7E-06 1.5E-10 86.3 8.1 58 729-804 130-187 (426)
47 PF13855 LRR_8: Leucine rich r 98.0 5.4E-06 1.2E-10 63.3 3.8 58 345-403 2-60 (61)
48 KOG1859 Leucine-rich repeat pr 97.9 7E-07 1.5E-11 96.9 -3.1 119 303-442 174-292 (1096)
49 KOG2982 Uncharacterized conser 97.9 1.4E-06 3E-11 84.7 -2.0 110 320-442 44-159 (418)
50 KOG0531 Protein phosphatase 1, 97.9 2.1E-06 4.6E-11 94.5 -1.1 182 238-459 77-263 (414)
51 KOG4579 Leucine-rich repeat (L 97.8 2.9E-06 6.2E-11 72.9 -1.1 107 237-362 31-141 (177)
52 KOG1859 Leucine-rich repeat pr 97.8 1.2E-06 2.6E-11 95.2 -5.0 50 237-288 168-218 (1096)
53 KOG3665 ZYG-1-like serine/thre 97.7 1.7E-05 3.6E-10 91.1 3.4 155 278-458 121-282 (699)
54 KOG3665 ZYG-1-like serine/thre 97.7 3.5E-05 7.6E-10 88.5 5.5 144 219-382 105-265 (699)
55 KOG1947 Leucine rich repeat pr 97.7 4.5E-06 9.7E-11 94.9 -2.4 174 506-690 187-366 (482)
56 KOG0531 Protein phosphatase 1, 97.7 6.3E-06 1.4E-10 90.7 -1.3 170 253-461 70-242 (414)
57 PRK09376 rho transcription ter 97.5 0.00013 2.9E-09 76.0 5.9 51 179-230 170-222 (416)
58 PF12799 LRR_4: Leucine Rich r 97.5 9.5E-05 2.1E-09 51.5 3.4 36 344-379 1-36 (44)
59 PF12799 LRR_4: Leucine Rich r 97.5 0.00011 2.3E-09 51.2 3.6 40 321-360 1-40 (44)
60 KOG1947 Leucine rich repeat pr 97.5 5.9E-06 1.3E-10 93.9 -5.3 145 531-686 186-332 (482)
61 PF05659 RPW8: Arabidopsis bro 97.5 0.0016 3.5E-08 58.8 11.3 113 2-132 3-115 (147)
62 KOG1644 U2-associated snRNP A' 97.4 0.00015 3.3E-09 67.1 4.1 101 256-376 43-149 (233)
63 cd01128 rho_factor Transcripti 97.4 0.00024 5.2E-09 71.1 5.7 50 179-229 17-68 (249)
64 KOG1644 U2-associated snRNP A' 97.3 0.00043 9.4E-09 64.2 6.0 51 238-288 47-97 (233)
65 KOG4579 Leucine-rich repeat (L 97.2 9.2E-05 2E-09 63.9 0.5 95 223-337 43-139 (177)
66 COG5238 RNA1 Ran GTPase-activa 97.2 0.00056 1.2E-08 66.2 5.2 48 220-267 17-70 (388)
67 PTZ00202 tuzin; Provisional 97.0 0.014 3E-07 61.7 13.9 77 151-235 256-335 (550)
68 KOG2123 Uncharacterized conser 97.0 7.5E-05 1.6E-09 72.3 -2.5 107 319-435 17-123 (388)
69 PRK11331 5-methylcytosine-spec 96.9 0.0042 9.1E-08 66.6 9.7 70 156-227 174-243 (459)
70 KOG2982 Uncharacterized conser 96.9 0.00033 7.2E-09 68.7 1.2 21 421-441 241-261 (418)
71 COG5238 RNA1 Ran GTPase-activa 96.8 0.0051 1.1E-07 59.8 8.5 143 223-379 82-254 (388)
72 PRK08118 topology modulation p 96.7 0.0013 2.7E-08 62.0 3.1 50 180-230 3-57 (167)
73 TIGR00767 rho transcription te 96.5 0.0045 9.7E-08 65.3 6.2 52 179-231 169-222 (415)
74 PF13191 AAA_16: AAA ATPase do 96.5 0.005 1.1E-07 59.4 6.4 48 158-205 1-51 (185)
75 PRK00411 cdc6 cell division co 96.4 0.012 2.6E-07 64.6 9.2 79 156-234 29-111 (394)
76 PF01637 Arch_ATPase: Archaeal 96.2 0.006 1.3E-07 61.4 5.1 44 159-202 1-44 (234)
77 TIGR02928 orc1/cdc6 family rep 96.1 0.018 4E-07 62.5 8.5 77 157-233 15-99 (365)
78 KOG2739 Leucine-rich acidic nu 95.9 0.006 1.3E-07 59.5 3.1 83 320-405 42-129 (260)
79 cd00009 AAA The AAA+ (ATPases 95.9 0.03 6.5E-07 51.4 7.8 57 160-218 1-57 (151)
80 KOG2739 Leucine-rich acidic nu 95.3 0.011 2.3E-07 57.8 2.4 80 319-399 63-150 (260)
81 PF00560 LRR_1: Leucine Rich R 95.3 0.0067 1.5E-07 34.9 0.6 21 345-365 1-21 (22)
82 KOG3864 Uncharacterized conser 95.2 0.0038 8.3E-08 58.2 -0.8 71 557-629 120-190 (221)
83 smart00763 AAA_PrkA PrkA AAA d 95.1 0.036 7.8E-07 58.0 5.9 47 158-204 52-104 (361)
84 TIGR02903 spore_lon_C ATP-depe 95.1 0.41 8.8E-06 55.3 14.8 62 156-217 153-217 (615)
85 COG0466 Lon ATP-dependent Lon 95.1 0.23 5.1E-06 55.7 12.0 47 156-202 322-374 (782)
86 KOG2123 Uncharacterized conser 95.0 0.0026 5.7E-08 62.0 -2.7 101 277-398 17-123 (388)
87 PRK07261 topology modulation p 94.7 0.068 1.5E-06 50.6 6.0 35 180-214 2-37 (171)
88 TIGR00635 ruvB Holliday juncti 94.6 0.043 9.4E-07 57.8 5.1 47 157-203 4-55 (305)
89 PF13207 AAA_17: AAA domain; P 94.6 0.034 7.3E-07 49.2 3.6 23 180-202 1-23 (121)
90 KOG3864 Uncharacterized conser 94.6 0.0062 1.3E-07 56.9 -1.3 70 728-809 122-191 (221)
91 PF13306 LRR_5: Leucine rich r 94.5 0.079 1.7E-06 47.4 5.8 117 253-394 10-128 (129)
92 PF05496 RuvB_N: Holliday junc 94.4 0.092 2E-06 50.8 6.2 49 155-203 22-75 (233)
93 PRK06696 uridine kinase; Valid 94.0 0.09 1.9E-06 52.4 5.6 43 161-203 2-47 (223)
94 KOG2028 ATPase related to the 94.0 0.079 1.7E-06 54.0 5.0 56 169-228 153-212 (554)
95 PRK00080 ruvB Holliday junctio 93.9 0.08 1.7E-06 56.3 5.3 51 153-203 21-76 (328)
96 PF13401 AAA_22: AAA domain; P 93.6 0.087 1.9E-06 47.3 4.3 58 178-235 4-64 (131)
97 PRK04195 replication factor C 93.6 0.073 1.6E-06 59.8 4.6 52 151-202 8-63 (482)
98 PRK13342 recombination factor 93.4 0.085 1.8E-06 58.0 4.6 47 156-202 11-60 (413)
99 TIGR03015 pepcterm_ATPase puta 93.4 0.25 5.3E-06 51.0 7.9 65 167-234 29-96 (269)
100 PF13504 LRR_7: Leucine rich r 93.3 0.052 1.1E-06 28.9 1.4 16 345-360 2-17 (17)
101 PRK15455 PrkA family serine pr 93.3 0.12 2.5E-06 57.2 5.3 45 158-202 77-127 (644)
102 PRK07667 uridine kinase; Provi 93.2 0.12 2.5E-06 50.2 4.6 38 166-203 3-42 (193)
103 PRK00440 rfc replication facto 93.1 0.32 6.9E-06 51.6 8.3 51 152-202 12-62 (319)
104 PRK09270 nucleoside triphospha 93.0 0.15 3.3E-06 50.9 5.3 28 176-203 31-58 (229)
105 PLN03025 replication factor C 92.9 0.31 6.8E-06 51.5 7.8 52 151-202 7-58 (319)
106 KOG2004 Mitochondrial ATP-depe 92.9 0.63 1.4E-05 52.2 10.1 47 156-202 410-462 (906)
107 CHL00095 clpC Clp protease ATP 92.8 0.13 2.8E-06 61.9 5.3 46 157-202 179-224 (821)
108 COG0542 clpA ATP-binding subun 92.8 3 6.5E-05 48.5 15.7 46 157-202 491-545 (786)
109 KOG0991 Replication factor C, 92.8 0.18 3.8E-06 48.3 4.9 73 150-222 20-92 (333)
110 PF00485 PRK: Phosphoribulokin 92.7 0.1 2.2E-06 50.7 3.4 24 180-203 1-24 (194)
111 TIGR02881 spore_V_K stage V sp 92.5 0.28 6E-06 50.2 6.6 46 157-202 6-66 (261)
112 PRK12402 replication factor C 92.5 0.18 3.9E-06 54.0 5.5 51 152-202 10-60 (337)
113 PRK06547 hypothetical protein; 92.3 0.22 4.7E-06 47.1 4.9 35 168-202 5-39 (172)
114 PRK12727 flagellar biosynthesi 92.2 1.8 3.9E-05 48.0 12.4 25 178-202 350-374 (559)
115 TIGR01425 SRP54_euk signal rec 92.1 1.8 3.9E-05 47.0 12.2 28 176-203 98-125 (429)
116 TIGR03345 VI_ClpV1 type VI sec 92.1 0.19 4.1E-06 60.2 5.3 47 156-202 186-232 (852)
117 PF12061 DUF3542: Protein of u 92.0 0.86 1.9E-05 45.7 8.6 58 37-95 314-372 (402)
118 PF13238 AAA_18: AAA domain; P 91.9 0.15 3.3E-06 45.5 3.4 21 181-201 1-21 (129)
119 PTZ00301 uridine kinase; Provi 91.8 0.23 5E-06 48.5 4.7 25 178-202 3-27 (210)
120 TIGR00763 lon ATP-dependent pr 91.7 1.5 3.2E-05 52.6 12.3 46 157-202 320-371 (775)
121 PF13306 LRR_5: Leucine rich r 91.7 0.34 7.3E-06 43.3 5.5 107 270-400 3-111 (129)
122 TIGR03420 DnaA_homol_Hda DnaA 91.7 0.36 7.9E-06 48.2 6.2 42 162-203 22-63 (226)
123 TIGR02639 ClpA ATP-dependent C 91.7 0.23 4.9E-06 59.0 5.4 46 157-202 182-227 (731)
124 PRK05480 uridine/cytidine kina 91.7 0.17 3.7E-06 49.8 3.7 27 176-202 4-30 (209)
125 COG1474 CDC6 Cdc6-related prot 91.6 0.81 1.8E-05 48.9 8.9 78 157-234 17-98 (366)
126 PHA02544 44 clamp loader, smal 91.6 0.27 5.9E-06 52.1 5.4 52 151-202 15-67 (316)
127 CHL00181 cbbX CbbX; Provisiona 91.5 0.5 1.1E-05 48.8 7.0 61 157-217 23-98 (287)
128 PF13173 AAA_14: AAA domain 91.5 0.26 5.7E-06 44.0 4.4 38 178-218 2-39 (128)
129 PF05729 NACHT: NACHT domain 91.4 0.39 8.5E-06 45.0 5.8 40 179-218 1-44 (166)
130 TIGR00235 udk uridine kinase. 91.4 0.16 3.5E-06 49.9 3.2 25 178-202 6-30 (207)
131 PRK10865 protein disaggregatio 91.3 0.23 5E-06 59.7 4.9 47 156-202 177-223 (857)
132 PRK14963 DNA polymerase III su 91.2 0.28 6E-06 55.0 5.1 51 153-203 10-61 (504)
133 PHA00729 NTP-binding motif con 91.2 0.31 6.7E-06 47.7 4.8 36 167-202 6-41 (226)
134 COG1618 Predicted nucleotide k 91.1 0.24 5.1E-06 44.8 3.5 28 179-206 6-33 (179)
135 PTZ00112 origin recognition co 91.0 0.92 2E-05 52.8 8.8 78 156-233 754-841 (1164)
136 PF06309 Torsin: Torsin; Inte 90.9 0.47 1E-05 41.4 5.1 45 157-201 25-76 (127)
137 cd02019 NK Nucleoside/nucleoti 90.9 0.22 4.8E-06 38.7 2.9 23 180-202 1-23 (69)
138 PRK13341 recombination factor 90.8 0.32 7E-06 56.8 5.4 48 155-202 26-76 (725)
139 COG2256 MGS1 ATPase related to 90.8 0.61 1.3E-05 48.8 6.7 46 157-202 24-72 (436)
140 PRK08233 hypothetical protein; 90.8 0.2 4.4E-06 48.0 3.2 25 178-202 3-27 (182)
141 KOG0473 Leucine-rich repeat pr 90.5 0.019 4.1E-07 54.7 -4.1 86 276-380 39-124 (326)
142 TIGR01242 26Sp45 26S proteasom 90.4 0.38 8.3E-06 51.9 5.2 48 155-202 120-180 (364)
143 PRK06762 hypothetical protein; 90.4 0.25 5.4E-06 46.6 3.3 24 179-202 3-26 (166)
144 PF03205 MobB: Molybdopterin g 90.3 0.35 7.6E-06 43.8 4.0 39 179-218 1-39 (140)
145 COG2255 RuvB Holliday junction 90.2 0.52 1.1E-05 46.9 5.3 51 155-205 24-79 (332)
146 PF00158 Sigma54_activat: Sigm 90.0 0.54 1.2E-05 44.2 5.2 43 159-202 1-46 (168)
147 TIGR03346 chaperone_ClpB ATP-d 89.8 0.43 9.3E-06 57.6 5.5 46 157-202 173-218 (852)
148 COG1763 MobB Molybdopterin-gua 89.7 0.37 7.9E-06 44.5 3.7 29 178-206 2-30 (161)
149 PRK11034 clpA ATP-dependent Cl 89.7 0.84 1.8E-05 53.7 7.5 46 157-202 186-231 (758)
150 KOG2543 Origin recognition com 89.7 0.99 2.1E-05 46.9 7.0 74 156-234 5-81 (438)
151 PRK10865 protein disaggregatio 89.6 6.2 0.00014 47.7 15.0 46 157-202 568-622 (857)
152 COG1428 Deoxynucleoside kinase 89.5 0.3 6.6E-06 46.5 3.0 26 178-203 4-29 (216)
153 cd02025 PanK Pantothenate kina 89.3 0.26 5.6E-06 48.8 2.6 24 180-203 1-24 (220)
154 COG0572 Udk Uridine kinase [Nu 89.2 0.35 7.5E-06 46.7 3.3 27 177-203 7-33 (218)
155 PF13671 AAA_33: AAA domain; P 89.2 0.39 8.4E-06 43.8 3.6 23 180-202 1-23 (143)
156 PRK14722 flhF flagellar biosyn 89.2 11 0.00023 40.4 14.7 25 178-202 137-161 (374)
157 KOG1532 GTPase XAB1, interacts 89.1 0.55 1.2E-05 46.2 4.5 30 178-207 19-48 (366)
158 PRK14962 DNA polymerase III su 89.0 0.63 1.4E-05 51.7 5.6 50 153-202 10-60 (472)
159 TIGR02880 cbbX_cfxQ probable R 89.0 1.2 2.5E-05 46.2 7.2 61 157-217 22-97 (284)
160 cd02023 UMPK Uridine monophosp 88.9 0.3 6.6E-06 47.6 2.7 23 180-202 1-23 (198)
161 PRK03992 proteasome-activating 88.9 0.55 1.2E-05 51.1 4.9 48 155-202 129-189 (389)
162 cd02024 NRK1 Nicotinamide ribo 88.9 0.33 7.1E-06 46.4 2.8 22 180-201 1-22 (187)
163 TIGR00554 panK_bact pantothena 88.8 0.49 1.1E-05 48.6 4.2 27 176-202 60-86 (290)
164 PRK14961 DNA polymerase III su 88.7 0.73 1.6E-05 49.7 5.8 49 154-202 13-62 (363)
165 KOG0473 Leucine-rich repeat pr 88.6 0.024 5.2E-07 54.0 -4.9 88 227-334 36-124 (326)
166 PRK03839 putative kinase; Prov 88.5 0.4 8.6E-06 45.9 3.3 23 180-202 2-24 (180)
167 COG1084 Predicted GTPase [Gene 88.5 8.4 0.00018 39.6 12.5 52 39-91 41-92 (346)
168 TIGR01360 aden_kin_iso1 adenyl 88.5 0.43 9.2E-06 46.0 3.5 25 177-201 2-26 (188)
169 PRK10751 molybdopterin-guanine 88.5 0.5 1.1E-05 44.3 3.8 27 177-203 5-31 (173)
170 PRK05541 adenylylsulfate kinas 88.4 0.69 1.5E-05 44.0 4.8 27 177-203 6-32 (176)
171 COG2274 SunT ABC-type bacterio 88.4 11 0.00023 44.3 15.2 24 178-201 499-522 (709)
172 PRK00771 signal recognition pa 88.3 6 0.00013 43.4 12.4 27 177-203 94-120 (437)
173 cd01878 HflX HflX subfamily. 88.2 1.6 3.4E-05 42.7 7.4 27 176-202 39-65 (204)
174 PRK14956 DNA polymerase III su 88.2 0.71 1.5E-05 50.6 5.2 50 153-202 14-64 (484)
175 COG1223 Predicted ATPase (AAA+ 88.1 0.59 1.3E-05 45.7 3.9 48 156-203 120-176 (368)
176 PRK08903 DnaA regulatory inact 88.0 0.88 1.9E-05 45.4 5.5 44 159-202 21-66 (227)
177 TIGR00150 HI0065_YjeE ATPase, 88.0 1.1 2.4E-05 39.9 5.4 40 164-203 6-47 (133)
178 PRK05564 DNA polymerase III su 87.9 1.2 2.7E-05 46.9 6.8 59 157-215 4-67 (313)
179 TIGR00176 mobB molybdopterin-g 87.9 0.74 1.6E-05 42.6 4.5 24 180-203 1-24 (155)
180 PRK10463 hydrogenase nickel in 87.8 0.91 2E-05 46.3 5.3 35 168-202 94-128 (290)
181 PRK14957 DNA polymerase III su 87.8 0.76 1.7E-05 51.7 5.3 49 154-202 13-62 (546)
182 PRK05703 flhF flagellar biosyn 87.7 5.1 0.00011 44.0 11.5 25 178-202 221-245 (424)
183 PF00560 LRR_1: Leucine Rich R 87.7 0.28 6E-06 28.2 0.9 21 368-390 1-21 (22)
184 TIGR02030 BchI-ChlI magnesium 87.6 0.8 1.7E-05 48.3 5.0 46 157-202 4-49 (337)
185 PRK04040 adenylate kinase; Pro 87.5 0.53 1.2E-05 45.2 3.4 24 179-202 3-26 (188)
186 PRK14955 DNA polymerase III su 87.5 0.87 1.9E-05 49.7 5.5 50 153-202 12-62 (397)
187 KOG1969 DNA replication checkp 87.5 0.41 8.9E-06 53.8 2.9 74 155-233 269-376 (877)
188 PRK00889 adenylylsulfate kinas 87.4 0.56 1.2E-05 44.6 3.5 27 177-203 3-29 (175)
189 CHL00081 chlI Mg-protoporyphyr 87.4 0.74 1.6E-05 48.6 4.7 48 156-203 16-63 (350)
190 PRK10536 hypothetical protein; 87.4 3.4 7.5E-05 41.3 9.0 46 155-202 53-98 (262)
191 cd02028 UMPK_like Uridine mono 87.4 0.44 9.6E-06 45.4 2.8 24 180-203 1-24 (179)
192 PRK05896 DNA polymerase III su 87.4 0.87 1.9E-05 51.5 5.4 51 152-202 11-62 (605)
193 smart00369 LRR_TYP Leucine-ric 87.3 0.52 1.1E-05 28.3 2.1 21 343-363 1-21 (26)
194 smart00370 LRR Leucine-rich re 87.3 0.52 1.1E-05 28.3 2.1 21 343-363 1-21 (26)
195 COG3640 CooC CO dehydrogenase 87.3 0.78 1.7E-05 44.4 4.2 22 180-201 2-23 (255)
196 PRK00625 shikimate kinase; Pro 87.1 0.53 1.2E-05 44.4 3.1 23 180-202 2-24 (173)
197 PRK08084 DNA replication initi 87.1 1.1 2.3E-05 45.0 5.5 47 157-203 23-70 (235)
198 PRK10787 DNA-binding ATP-depen 87.0 0.88 1.9E-05 54.0 5.5 47 156-202 321-373 (784)
199 TIGR02322 phosphon_PhnN phosph 86.8 0.59 1.3E-05 44.7 3.3 24 179-202 2-25 (179)
200 TIGR00073 hypB hydrogenase acc 86.4 0.79 1.7E-05 45.0 4.0 31 172-202 16-46 (207)
201 PRK10867 signal recognition pa 86.2 7.9 0.00017 42.4 11.8 26 176-201 98-123 (433)
202 PRK03846 adenylylsulfate kinas 86.2 0.71 1.5E-05 44.9 3.5 27 176-202 22-48 (198)
203 COG1419 FlhF Flagellar GTP-bin 86.2 9.7 0.00021 40.6 11.9 36 167-202 188-228 (407)
204 TIGR03263 guanyl_kin guanylate 86.2 0.56 1.2E-05 44.8 2.8 23 179-201 2-24 (180)
205 PRK14960 DNA polymerase III su 86.1 1.1 2.3E-05 51.0 5.2 50 153-202 11-61 (702)
206 PF08298 AAA_PrkA: PrkA AAA do 86.0 1.3 2.9E-05 46.1 5.5 47 156-202 60-112 (358)
207 PRK06217 hypothetical protein; 86.0 0.63 1.4E-05 44.6 3.1 24 180-203 3-26 (183)
208 PF01583 APS_kinase: Adenylyls 86.0 0.97 2.1E-05 41.5 4.0 25 179-203 3-27 (156)
209 TIGR02902 spore_lonB ATP-depen 85.8 1.3 2.9E-05 50.2 6.0 47 156-202 64-110 (531)
210 PRK14949 DNA polymerase III su 85.7 1.2 2.5E-05 52.6 5.3 49 154-202 13-62 (944)
211 PRK00131 aroK shikimate kinase 85.6 0.82 1.8E-05 43.3 3.7 25 178-202 4-28 (175)
212 cd02020 CMPK Cytidine monophos 85.6 0.56 1.2E-05 43.0 2.4 23 180-202 1-23 (147)
213 PRK12723 flagellar biosynthesi 85.6 7.9 0.00017 41.8 11.3 25 178-202 174-198 (388)
214 PF02562 PhoH: PhoH-like prote 85.5 1.9 4.1E-05 41.7 5.9 53 160-214 3-55 (205)
215 PRK13531 regulatory ATPase Rav 85.5 1.3 2.7E-05 48.6 5.2 44 157-202 20-63 (498)
216 PRK14964 DNA polymerase III su 85.4 1.1 2.5E-05 49.6 5.0 49 152-200 8-57 (491)
217 PRK13949 shikimate kinase; Pro 85.3 0.74 1.6E-05 43.4 3.1 23 180-202 3-25 (169)
218 PRK08727 hypothetical protein; 84.9 1.7 3.6E-05 43.5 5.6 56 159-216 22-77 (233)
219 PRK10078 ribose 1,5-bisphospho 84.8 0.76 1.6E-05 44.2 3.0 23 179-201 3-25 (186)
220 smart00382 AAA ATPases associa 84.8 0.8 1.7E-05 41.3 3.0 24 179-202 3-26 (148)
221 PRK09087 hypothetical protein; 84.7 1.8 3.8E-05 43.1 5.6 28 175-202 41-68 (226)
222 PRK12323 DNA polymerase III su 84.7 1.3 2.8E-05 50.3 5.0 50 153-202 12-62 (700)
223 PRK06893 DNA replication initi 84.7 1.8 3.9E-05 43.2 5.7 41 175-217 36-76 (229)
224 COG1124 DppF ABC-type dipeptid 84.7 0.77 1.7E-05 44.8 2.8 22 179-200 34-55 (252)
225 PRK08691 DNA polymerase III su 84.7 1.3 2.9E-05 50.8 5.1 50 152-201 11-61 (709)
226 TIGR00602 rad24 checkpoint pro 84.6 1.3 2.8E-05 50.8 5.1 53 150-202 77-134 (637)
227 PRK00300 gmk guanylate kinase; 84.6 0.81 1.7E-05 44.9 3.1 24 178-201 5-28 (205)
228 PRK13695 putative NTPase; Prov 84.6 1.3 2.9E-05 42.0 4.5 24 180-203 2-25 (174)
229 PTZ00361 26 proteosome regulat 84.5 1.4 3.1E-05 48.1 5.2 47 156-202 182-241 (438)
230 PRK14958 DNA polymerase III su 84.5 1.4 2.9E-05 49.7 5.2 50 153-202 12-62 (509)
231 PF00005 ABC_tran: ABC transpo 84.4 0.89 1.9E-05 41.1 3.1 24 179-202 12-35 (137)
232 PRK05057 aroK shikimate kinase 84.4 1 2.2E-05 42.6 3.6 24 179-202 5-28 (172)
233 PRK13975 thymidylate kinase; P 84.4 0.9 1.9E-05 44.1 3.4 25 179-203 3-27 (196)
234 COG0194 Gmk Guanylate kinase [ 84.4 1.2 2.7E-05 41.6 3.9 24 179-202 5-28 (191)
235 PRK14970 DNA polymerase III su 84.3 1.6 3.6E-05 47.2 5.7 50 153-202 13-63 (367)
236 PRK06620 hypothetical protein; 84.3 1.8 3.8E-05 42.6 5.3 47 156-202 16-68 (214)
237 PF00910 RNA_helicase: RNA hel 84.3 0.8 1.7E-05 39.3 2.6 22 181-202 1-22 (107)
238 PRK14493 putative bifunctional 84.2 0.79 1.7E-05 46.8 2.9 27 179-205 2-28 (274)
239 cd00464 SK Shikimate kinase (S 84.1 0.91 2E-05 42.0 3.1 22 181-202 2-23 (154)
240 PF08477 Miro: Miro-like prote 84.1 0.96 2.1E-05 39.6 3.1 22 181-202 2-23 (119)
241 cd00820 PEPCK_HprK Phosphoenol 84.0 0.93 2E-05 38.5 2.8 21 179-199 16-36 (107)
242 PTZ00454 26S protease regulato 84.0 1.6 3.5E-05 47.3 5.3 48 155-202 143-203 (398)
243 cd00071 GMPK Guanosine monopho 84.0 0.8 1.7E-05 41.4 2.6 21 181-201 2-22 (137)
244 cd02021 GntK Gluconate kinase 84.0 0.84 1.8E-05 42.1 2.8 22 180-201 1-22 (150)
245 TIGR01359 UMP_CMP_kin_fam UMP- 83.9 0.84 1.8E-05 43.8 2.9 23 180-202 1-23 (183)
246 cd02027 APSK Adenosine 5'-phos 83.9 0.75 1.6E-05 42.3 2.4 23 180-202 1-23 (149)
247 PF00004 AAA: ATPase family as 83.9 1 2.2E-05 40.3 3.2 22 181-202 1-22 (132)
248 PF05673 DUF815: Protein of un 83.8 4 8.7E-05 40.3 7.4 53 153-205 23-79 (249)
249 cd03116 MobB Molybdenum is an 83.8 1.3 2.8E-05 41.2 3.9 25 179-203 2-26 (159)
250 TIGR02237 recomb_radB DNA repa 83.7 2.2 4.7E-05 41.9 5.8 46 179-227 13-58 (209)
251 cd00227 CPT Chloramphenicol (C 83.7 1 2.2E-05 42.8 3.3 24 179-202 3-26 (175)
252 PF00448 SRP54: SRP54-type pro 83.5 3 6.5E-05 40.3 6.5 25 179-203 2-26 (196)
253 COG1120 FepC ABC-type cobalami 83.4 0.94 2E-05 45.3 3.0 25 178-202 28-52 (258)
254 COG2019 AdkA Archaeal adenylat 83.2 1 2.2E-05 41.1 2.8 24 178-201 4-27 (189)
255 cd01123 Rad51_DMC1_radA Rad51_ 83.2 2 4.3E-05 43.1 5.4 49 179-227 20-72 (235)
256 PRK13947 shikimate kinase; Pro 83.2 1 2.2E-05 42.6 3.1 23 180-202 3-25 (171)
257 CHL00095 clpC Clp protease ATP 83.1 37 0.00081 41.1 16.9 45 157-201 509-562 (821)
258 TIGR01287 nifH nitrogenase iro 83.0 0.87 1.9E-05 47.1 2.7 24 179-202 1-24 (275)
259 PRK07003 DNA polymerase III su 83.0 1.8 3.8E-05 50.1 5.2 51 152-202 11-62 (830)
260 smart00367 LRR_CC Leucine-rich 82.9 0.6 1.3E-05 28.1 0.9 18 674-691 1-18 (26)
261 PRK08154 anaerobic benzoate ca 82.9 2 4.4E-05 45.0 5.4 27 176-202 131-157 (309)
262 PRK09111 DNA polymerase III su 82.9 1.7 3.8E-05 49.7 5.2 52 151-202 18-70 (598)
263 PF07728 AAA_5: AAA domain (dy 82.9 3 6.4E-05 37.7 5.9 41 181-226 2-42 (139)
264 PRK14954 DNA polymerase III su 82.8 1.8 3.9E-05 49.7 5.3 49 154-202 13-62 (620)
265 TIGR02397 dnaX_nterm DNA polym 82.8 2.1 4.5E-05 46.2 5.7 48 155-202 12-60 (355)
266 COG1126 GlnQ ABC-type polar am 82.8 1.1 2.4E-05 42.9 3.0 34 178-214 28-61 (240)
267 cd01672 TMPK Thymidine monopho 82.8 1.1 2.4E-05 43.5 3.3 24 180-203 2-25 (200)
268 PRK11889 flhF flagellar biosyn 82.6 2.2 4.8E-05 45.4 5.4 25 178-202 241-265 (436)
269 PF03193 DUF258: Protein of un 82.5 1.7 3.7E-05 40.1 4.1 35 164-201 24-58 (161)
270 COG1936 Predicted nucleotide k 82.5 1.1 2.3E-05 41.4 2.6 20 180-199 2-21 (180)
271 PRK09825 idnK D-gluconate kina 82.4 1.2 2.6E-05 42.3 3.2 24 179-202 4-27 (176)
272 PRK14951 DNA polymerase III su 82.4 1.7 3.8E-05 49.7 4.9 48 154-201 13-61 (618)
273 PLN02796 D-glycerate 3-kinase 82.3 1.1 2.4E-05 46.8 3.1 27 177-203 99-125 (347)
274 PRK09112 DNA polymerase III su 82.1 3.3 7.1E-05 44.2 6.7 51 152-202 18-69 (351)
275 TIGR03689 pup_AAA proteasome A 82.1 1.9 4E-05 48.2 4.9 48 156-203 181-241 (512)
276 PRK13946 shikimate kinase; Pro 82.0 1.3 2.8E-05 42.5 3.3 24 179-202 11-34 (184)
277 COG0563 Adk Adenylate kinase a 81.9 1.2 2.7E-05 42.1 3.1 23 180-202 2-24 (178)
278 PRK14490 putative bifunctional 81.9 2 4.2E-05 46.5 5.0 25 179-203 6-30 (369)
279 smart00370 LRR Leucine-rich re 81.8 1.1 2.5E-05 26.8 1.8 23 254-276 1-23 (26)
280 smart00369 LRR_TYP Leucine-ric 81.8 1.1 2.5E-05 26.8 1.8 23 254-276 1-23 (26)
281 PRK13236 nitrogenase reductase 81.7 1.2 2.5E-05 46.6 3.1 25 175-199 3-27 (296)
282 TIGR00959 ffh signal recogniti 81.7 11 0.00024 41.3 10.6 25 177-201 98-122 (428)
283 cd03255 ABC_MJ0796_Lo1CDE_FtsE 81.7 1.2 2.5E-05 44.2 3.0 23 179-201 31-53 (218)
284 PF10662 PduV-EutP: Ethanolami 81.6 1.2 2.7E-05 40.0 2.8 24 179-202 2-25 (143)
285 KOG0781 Signal recognition par 81.6 3 6.4E-05 44.8 5.9 38 175-214 375-413 (587)
286 KOG0727 26S proteasome regulat 81.6 28 0.0006 34.2 11.8 46 157-202 155-213 (408)
287 PRK06645 DNA polymerase III su 81.6 2.3 5.1E-05 47.5 5.5 51 152-202 16-67 (507)
288 PRK13232 nifH nitrogenase redu 81.6 1.1 2.4E-05 46.2 2.8 23 179-201 2-24 (273)
289 cd03225 ABC_cobalt_CbiO_domain 81.5 1.2 2.6E-05 43.9 3.0 23 179-201 28-50 (211)
290 PRK12339 2-phosphoglycerate ki 81.5 1.5 3.2E-05 42.4 3.5 24 178-201 3-26 (197)
291 PF06564 YhjQ: YhjQ protein; 81.5 1.2 2.6E-05 44.3 2.8 24 179-202 2-26 (243)
292 PRK04182 cytidylate kinase; Pr 81.4 1.4 3E-05 42.1 3.3 23 180-202 2-24 (180)
293 PRK14723 flhF flagellar biosyn 81.4 21 0.00045 42.0 13.0 25 178-202 185-209 (767)
294 PRK14969 DNA polymerase III su 81.4 2.3 4.9E-05 48.2 5.4 48 155-202 14-62 (527)
295 PRK14530 adenylate kinase; Pro 81.4 1.4 3E-05 43.6 3.3 23 180-202 5-27 (215)
296 PRK13230 nitrogenase reductase 81.4 1.1 2.4E-05 46.4 2.8 23 179-201 2-24 (279)
297 PRK13407 bchI magnesium chelat 81.4 2.1 4.5E-05 45.2 4.7 47 155-201 6-52 (334)
298 PLN02348 phosphoribulokinase 81.3 1.4 3.1E-05 46.8 3.6 27 176-202 47-73 (395)
299 cd02117 NifH_like This family 81.3 1.2 2.5E-05 44.0 2.8 23 179-201 1-23 (212)
300 PLN02318 phosphoribulokinase/u 81.3 1.7 3.7E-05 48.7 4.2 27 175-201 62-88 (656)
301 cd03229 ABC_Class3 This class 81.3 1.3 2.8E-05 42.2 3.0 23 179-201 27-49 (178)
302 cd01983 Fer4_NifH The Fer4_Nif 81.2 1.2 2.5E-05 37.2 2.4 24 180-203 1-24 (99)
303 PRK14952 DNA polymerase III su 81.2 2.3 5E-05 48.4 5.4 50 153-202 9-59 (584)
304 COG1100 GTPase SAR1 and relate 81.0 1 2.3E-05 44.6 2.4 24 179-202 6-29 (219)
305 PF01926 MMR_HSR1: 50S ribosom 80.9 1.5 3.2E-05 38.3 3.0 20 181-200 2-21 (116)
306 TIGR01166 cbiO cobalt transpor 80.9 1.3 2.8E-05 42.7 2.9 23 179-201 19-41 (190)
307 cd04139 RalA_RalB RalA/RalB su 80.9 1.2 2.5E-05 41.6 2.6 23 180-202 2-24 (164)
308 COG1116 TauB ABC-type nitrate/ 80.9 1.3 2.8E-05 43.6 2.8 22 179-200 30-51 (248)
309 PRK15453 phosphoribulokinase; 80.9 1.6 3.5E-05 44.2 3.6 27 176-202 3-29 (290)
310 PRK05439 pantothenate kinase; 80.9 1.3 2.9E-05 45.8 3.1 27 176-202 84-110 (311)
311 TIGR01313 therm_gnt_kin carboh 80.7 1.2 2.6E-05 41.8 2.5 22 181-202 1-22 (163)
312 TIGR03499 FlhF flagellar biosy 80.7 1.2 2.7E-05 45.9 2.8 27 177-203 193-219 (282)
313 PRK05201 hslU ATP-dependent pr 80.7 2.5 5.5E-05 45.4 5.1 46 157-202 15-74 (443)
314 PF13604 AAA_30: AAA domain; P 80.6 3.5 7.7E-05 39.9 5.8 41 165-205 5-45 (196)
315 PRK13948 shikimate kinase; Pro 80.6 1.6 3.5E-05 41.5 3.3 26 177-202 9-34 (182)
316 cd01130 VirB11-like_ATPase Typ 80.5 2.6 5.6E-05 40.5 4.8 37 165-202 13-49 (186)
317 PRK07994 DNA polymerase III su 80.5 2.4 5.3E-05 48.7 5.3 49 154-202 13-62 (647)
318 cd03238 ABC_UvrA The excision 80.5 1.4 3E-05 41.7 2.9 21 179-199 22-42 (176)
319 PRK07471 DNA polymerase III su 80.4 3.3 7.3E-05 44.4 6.1 51 152-202 14-65 (365)
320 COG1121 ZnuC ABC-type Mn/Zn tr 80.4 1.4 3E-05 44.0 2.8 22 179-200 31-52 (254)
321 cd03222 ABC_RNaseL_inhibitor T 80.4 1.4 3E-05 41.8 2.8 25 177-201 24-48 (177)
322 PRK06761 hypothetical protein; 80.3 1.5 3.3E-05 44.7 3.3 25 179-203 4-28 (282)
323 TIGR00390 hslU ATP-dependent p 80.3 2.7 5.8E-05 45.2 5.1 47 157-203 12-72 (441)
324 TIGR00960 3a0501s02 Type II (G 80.2 1.4 3E-05 43.6 2.9 23 179-201 30-52 (216)
325 PRK05642 DNA replication initi 80.2 3.3 7.1E-05 41.5 5.6 39 176-216 43-81 (234)
326 cd02040 NifH NifH gene encodes 80.1 1.3 2.9E-05 45.5 2.9 24 179-202 2-25 (270)
327 PRK08939 primosomal protein Dn 80.0 19 0.00042 37.6 11.3 55 161-217 135-193 (306)
328 cd02026 PRK Phosphoribulokinas 79.9 1.3 2.9E-05 45.3 2.7 23 180-202 1-23 (273)
329 PRK03731 aroL shikimate kinase 79.8 1.4 3.1E-05 41.6 2.8 24 179-202 3-26 (171)
330 cd03259 ABC_Carb_Solutes_like 79.7 1.5 3.2E-05 43.3 3.0 23 179-201 27-49 (213)
331 cd03297 ABC_ModC_molybdenum_tr 79.7 1.6 3.4E-05 43.2 3.1 25 176-201 22-46 (214)
332 cd03261 ABC_Org_Solvent_Resist 79.6 1.5 3.2E-05 44.1 3.0 23 179-201 27-49 (235)
333 COG4608 AppF ABC-type oligopep 79.6 1.5 3.2E-05 43.8 2.8 26 177-202 38-63 (268)
334 PRK08099 bifunctional DNA-bind 79.6 1.6 3.6E-05 47.3 3.4 27 175-201 216-242 (399)
335 cd03114 ArgK-like The function 79.5 1.9 4.1E-05 39.5 3.4 23 180-202 1-23 (148)
336 PF13521 AAA_28: AAA domain; P 79.4 1.5 3.2E-05 41.1 2.7 21 181-201 2-22 (163)
337 TIGR02673 FtsE cell division A 79.4 1.6 3.4E-05 43.2 3.0 23 179-201 29-51 (214)
338 cd00879 Sar1 Sar1 subfamily. 79.3 2.8 6.1E-05 40.3 4.7 33 168-200 8-41 (190)
339 cd03293 ABC_NrtD_SsuB_transpor 79.3 1.6 3.4E-05 43.4 3.0 23 179-201 31-53 (220)
340 PRK13768 GTPase; Provisional 79.3 2 4.3E-05 43.6 3.7 25 179-203 3-27 (253)
341 PRK13235 nifH nitrogenase redu 79.2 1.4 3.1E-05 45.4 2.7 22 179-200 2-23 (274)
342 COG0125 Tmk Thymidylate kinase 79.2 4.8 0.0001 39.2 6.1 50 179-230 4-53 (208)
343 PRK13233 nifH nitrogenase redu 79.2 1.4 3.1E-05 45.4 2.8 23 179-201 3-25 (275)
344 cd03263 ABC_subfamily_A The AB 79.2 1.6 3.4E-05 43.3 3.0 24 179-202 29-52 (220)
345 PRK13541 cytochrome c biogenes 79.1 1.6 3.4E-05 42.4 2.9 24 179-202 27-50 (195)
346 COG0003 ArsA Predicted ATPase 79.1 1.4 3.1E-05 45.9 2.7 19 179-197 3-21 (322)
347 PRK06851 hypothetical protein; 79.1 37 0.0008 36.3 13.1 39 176-215 212-250 (367)
348 PF03308 ArgK: ArgK protein; 79.1 6 0.00013 39.4 6.7 41 165-205 14-56 (266)
349 PF03029 ATP_bind_1: Conserved 79.1 1.8 3.8E-05 43.4 3.2 23 183-205 1-23 (238)
350 cd03269 ABC_putative_ATPase Th 79.0 1.6 3.4E-05 43.0 2.9 23 179-201 27-49 (210)
351 cd03226 ABC_cobalt_CbiO_domain 79.0 1.6 3.5E-05 42.7 2.9 23 179-201 27-49 (205)
352 cd03260 ABC_PstB_phosphate_tra 79.0 1.6 3.5E-05 43.5 3.0 24 179-202 27-50 (227)
353 TIGR02173 cyt_kin_arch cytidyl 79.0 1.9 4.1E-05 40.7 3.3 22 180-201 2-23 (171)
354 smart00178 SAR Sar1p-like memb 78.9 2.8 6.1E-05 40.1 4.5 35 166-200 4-39 (184)
355 KOG3347 Predicted nucleotide k 78.8 2 4.4E-05 38.3 3.1 24 179-202 8-31 (176)
356 COG1703 ArgK Putative periplas 78.8 4 8.6E-05 41.3 5.4 60 167-226 38-99 (323)
357 cd03235 ABC_Metallic_Cations A 78.7 1.6 3.5E-05 43.0 2.8 23 179-201 26-48 (213)
358 PRK10584 putative ABC transpor 78.7 1.7 3.6E-05 43.4 3.0 24 178-201 36-59 (228)
359 cd02022 DPCK Dephospho-coenzym 78.7 1.6 3.4E-05 41.7 2.7 21 180-200 1-21 (179)
360 PHA02244 ATPase-like protein 78.7 4.5 9.8E-05 42.8 6.1 34 167-202 110-143 (383)
361 cd01673 dNK Deoxyribonucleosid 78.7 1.7 3.6E-05 42.1 2.9 22 180-201 1-22 (193)
362 COG3638 ABC-type phosphate/pho 78.6 1.8 3.9E-05 42.1 2.9 24 178-201 30-53 (258)
363 cd02034 CooC The accessory pro 78.6 2.5 5.4E-05 36.8 3.6 23 181-203 2-24 (116)
364 KOG0927 Predicted transporter 78.6 10 0.00022 41.7 8.7 44 158-202 395-440 (614)
365 COG1102 Cmk Cytidylate kinase 78.5 2 4.3E-05 39.1 3.0 43 180-235 2-44 (179)
366 cd02029 PRK_like Phosphoribulo 78.5 1.6 3.6E-05 43.7 2.7 23 180-202 1-23 (277)
367 cd03278 ABC_SMC_barmotin Barmo 78.5 1.6 3.6E-05 42.3 2.8 23 179-201 23-45 (197)
368 cd03265 ABC_DrrA DrrA is the A 78.4 1.7 3.8E-05 43.0 3.0 23 179-201 27-49 (220)
369 COG0237 CoaE Dephospho-CoA kin 78.4 1.9 4E-05 41.8 3.0 22 179-200 3-24 (201)
370 TIGR02315 ABC_phnC phosphonate 78.4 1.7 3.7E-05 43.9 3.0 23 179-201 29-51 (243)
371 TIGR03864 PQQ_ABC_ATP ABC tran 78.4 1.7 3.8E-05 43.6 3.0 23 179-201 28-50 (236)
372 PF01078 Mg_chelatase: Magnesi 78.3 4 8.7E-05 39.3 5.2 43 156-200 2-44 (206)
373 PRK06835 DNA replication prote 78.3 58 0.0012 34.4 14.3 25 179-203 184-208 (329)
374 PRK13538 cytochrome c biogenes 78.2 1.8 3.9E-05 42.4 2.9 24 179-202 28-51 (204)
375 cd04155 Arl3 Arl3 subfamily. 78.2 1.6 3.4E-05 41.3 2.5 24 178-201 14-37 (173)
376 cd03264 ABC_drug_resistance_li 78.2 1.6 3.5E-05 42.9 2.7 22 180-201 27-48 (211)
377 PRK15177 Vi polysaccharide exp 78.1 1.8 3.9E-05 42.7 3.0 23 179-201 14-36 (213)
378 PRK14527 adenylate kinase; Pro 78.1 2.2 4.7E-05 41.3 3.5 26 177-202 5-30 (191)
379 cd03296 ABC_CysA_sulfate_impor 78.1 1.8 3.8E-05 43.7 3.0 23 179-201 29-51 (239)
380 TIGR03574 selen_PSTK L-seryl-t 78.1 1.8 4E-05 43.9 3.1 23 181-203 2-24 (249)
381 PF00142 Fer4_NifH: 4Fe-4S iro 78.0 2 4.3E-05 42.8 3.1 24 179-202 1-24 (273)
382 TIGR01281 DPOR_bchL light-inde 78.0 1.6 3.5E-05 44.8 2.7 21 180-200 2-22 (268)
383 TIGR00455 apsK adenylylsulfate 77.9 2 4.4E-05 41.2 3.2 27 176-202 16-42 (184)
384 cd03256 ABC_PhnC_transporter A 77.9 1.8 3.9E-05 43.7 3.0 23 179-201 28-50 (241)
385 TIGR00064 ftsY signal recognit 77.9 2 4.2E-05 44.1 3.2 27 176-202 70-96 (272)
386 PRK06305 DNA polymerase III su 77.9 3.7 8.1E-05 45.5 5.6 48 155-202 15-63 (451)
387 COG0542 clpA ATP-binding subun 77.9 2.4 5.2E-05 49.3 4.2 42 157-200 170-213 (786)
388 PRK00698 tmk thymidylate kinas 77.8 2.1 4.5E-05 41.9 3.3 25 179-203 4-28 (205)
389 PRK08356 hypothetical protein; 77.8 1.8 3.9E-05 41.9 2.8 20 179-198 6-25 (195)
390 PF08423 Rad51: Rad51; InterP 77.8 5 0.00011 40.7 6.1 53 179-232 39-95 (256)
391 KOG0652 26S proteasome regulat 77.8 4.1 8.9E-05 39.9 5.0 47 156-202 170-229 (424)
392 COG0410 LivF ABC-type branched 77.7 2 4.3E-05 41.7 2.9 27 177-203 28-54 (237)
393 TIGR02211 LolD_lipo_ex lipopro 77.7 1.9 4.1E-05 42.8 3.0 24 178-201 31-54 (221)
394 cd01862 Rab7 Rab7 subfamily. 77.7 1.5 3.3E-05 41.3 2.3 22 180-201 2-23 (172)
395 TIGR01184 ntrCD nitrate transp 77.7 1.9 4.1E-05 43.1 3.0 23 179-201 12-34 (230)
396 cd01133 F1-ATPase_beta F1 ATP 77.7 5.3 0.00012 40.5 6.1 51 179-231 70-122 (274)
397 cd04153 Arl5_Arl8 Arl5/Arl8 su 77.6 3 6.5E-05 39.5 4.3 33 168-200 5-37 (174)
398 PRK13231 nitrogenase reductase 77.6 1.7 3.8E-05 44.5 2.8 23 179-201 3-25 (264)
399 TIGR00101 ureG urease accessor 77.6 2.2 4.7E-05 41.5 3.3 23 180-202 3-25 (199)
400 PLN03046 D-glycerate 3-kinase; 77.5 2 4.3E-05 46.0 3.1 26 177-202 211-236 (460)
401 cd03221 ABCF_EF-3 ABCF_EF-3 E 77.5 2 4.3E-05 39.2 2.9 24 179-202 27-50 (144)
402 PF02374 ArsA_ATPase: Anion-tr 77.5 2 4.2E-05 44.9 3.1 21 179-199 2-22 (305)
403 cd01120 RecA-like_NTPases RecA 77.4 3.4 7.3E-05 38.4 4.6 37 180-218 1-37 (165)
404 cd03292 ABC_FtsE_transporter F 77.4 1.9 4.2E-05 42.5 3.0 23 179-201 28-50 (214)
405 PF00625 Guanylate_kin: Guanyl 77.4 3.3 7.2E-05 39.6 4.5 25 178-202 2-26 (183)
406 cd03257 ABC_NikE_OppD_transpor 77.3 1.9 4.1E-05 43.1 2.9 23 179-201 32-54 (228)
407 COG4107 PhnK ABC-type phosphon 77.3 2.1 4.5E-05 39.3 2.7 25 177-201 31-55 (258)
408 PRK07764 DNA polymerase III su 77.3 3.2 7E-05 49.5 5.1 51 152-202 10-61 (824)
409 PRK14738 gmk guanylate kinase; 77.2 2.2 4.9E-05 41.7 3.3 25 177-201 12-36 (206)
410 KOG0989 Replication factor C, 77.2 4.4 9.6E-05 41.1 5.2 75 149-223 28-103 (346)
411 PF04665 Pox_A32: Poxvirus A32 77.2 3.3 7.2E-05 41.1 4.4 35 180-216 15-49 (241)
412 TIGR02639 ClpA ATP-dependent C 77.1 3.3 7.1E-05 49.3 5.2 46 157-202 454-508 (731)
413 smart00173 RAS Ras subfamily o 77.1 2 4.3E-05 40.1 2.9 22 180-201 2-23 (164)
414 PTZ00494 tuzin-like protein; P 77.0 40 0.00087 36.5 12.2 77 152-236 366-445 (664)
415 PRK09361 radB DNA repair and r 77.0 4.9 0.00011 40.0 5.8 46 178-226 23-68 (225)
416 cd03237 ABC_RNaseL_inhibitor_d 77.0 1.9 4.2E-05 43.5 2.9 23 179-201 26-48 (246)
417 PRK11248 tauB taurine transpor 77.0 2 4.3E-05 43.8 3.0 23 179-201 28-50 (255)
418 cd03115 SRP The signal recogni 77.0 2.4 5.2E-05 40.2 3.4 25 179-203 1-25 (173)
419 TIGR00041 DTMP_kinase thymidyl 77.0 2.7 5.9E-05 40.7 3.9 26 179-204 4-29 (195)
420 cd01129 PulE-GspE PulE/GspE Th 77.0 3.8 8.3E-05 41.8 5.0 43 160-202 62-104 (264)
421 TIGR03608 L_ocin_972_ABC putat 77.0 2 4.4E-05 42.0 3.0 23 179-201 25-47 (206)
422 PRK11629 lolD lipoprotein tran 77.0 2 4.4E-05 43.0 3.0 23 179-201 36-58 (233)
423 cd03258 ABC_MetN_methionine_tr 76.9 2 4.4E-05 43.0 3.0 25 178-202 31-55 (233)
424 PRK13765 ATP-dependent proteas 76.9 5.4 0.00012 46.1 6.6 74 156-233 30-103 (637)
425 TIGR02016 BchX chlorophyllide 76.7 1.9 4.2E-05 44.8 2.8 24 179-202 1-24 (296)
426 PRK10416 signal recognition pa 76.7 2.1 4.6E-05 44.8 3.2 27 177-203 113-139 (318)
427 cd01393 recA_like RecA is a b 76.7 5.1 0.00011 39.8 5.9 49 178-226 19-71 (226)
428 PF03215 Rad17: Rad17 cell cyc 76.7 4.6 9.9E-05 45.4 5.9 61 151-215 13-78 (519)
429 PRK07933 thymidylate kinase; V 76.7 2.8 6.1E-05 41.2 3.9 26 180-205 2-27 (213)
430 TIGR00750 lao LAO/AO transport 76.6 4.4 9.4E-05 42.4 5.5 29 175-203 31-59 (300)
431 COG0703 AroK Shikimate kinase 76.6 2.4 5.2E-05 39.4 3.0 23 180-202 4-26 (172)
432 cd03274 ABC_SMC4_euk Eukaryoti 76.6 2 4.4E-05 42.2 2.8 21 179-199 26-46 (212)
433 TIGR01189 ccmA heme ABC export 76.5 2.2 4.7E-05 41.5 3.0 25 178-202 26-50 (198)
434 cd03301 ABC_MalK_N The N-termi 76.5 2.1 4.6E-05 42.1 3.0 23 179-201 27-49 (213)
435 cd04113 Rab4 Rab4 subfamily. 76.5 2.1 4.5E-05 39.9 2.8 22 180-201 2-23 (161)
436 PRK13539 cytochrome c biogenes 76.4 2.2 4.7E-05 41.9 3.0 25 178-202 28-52 (207)
437 PF00308 Bac_DnaA: Bacterial d 76.4 11 0.00023 37.3 7.9 26 178-203 34-59 (219)
438 cd03224 ABC_TM1139_LivF_branch 76.4 2.1 4.4E-05 42.6 2.9 23 179-201 27-49 (222)
439 PRK10247 putative ABC transpor 76.4 2.2 4.7E-05 42.5 3.0 23 179-201 34-56 (225)
440 COG3899 Predicted ATPase [Gene 76.3 5.8 0.00013 47.8 7.0 46 158-203 1-49 (849)
441 cd03219 ABC_Mj1267_LivG_branch 76.2 2 4.3E-05 43.2 2.7 23 179-201 27-49 (236)
442 TIGR02770 nickel_nikD nickel i 76.2 2.1 4.6E-05 42.8 2.9 24 179-202 13-36 (230)
443 PF13555 AAA_29: P-loop contai 76.2 3.1 6.8E-05 31.3 3.0 20 180-199 25-44 (62)
444 PRK12377 putative replication 76.1 5.7 0.00012 39.9 5.9 38 178-217 101-138 (248)
445 PRK13540 cytochrome c biogenes 76.1 2.3 4.9E-05 41.5 3.0 25 178-202 27-51 (200)
446 PRK14737 gmk guanylate kinase; 76.1 2.3 5E-05 40.7 3.0 24 178-201 4-27 (186)
447 cd03295 ABC_OpuCA_Osmoprotecti 76.1 2.2 4.8E-05 43.1 3.0 23 179-201 28-50 (242)
448 cd03223 ABCD_peroxisomal_ALDP 75.9 2.4 5.1E-05 39.9 3.0 24 179-202 28-51 (166)
449 PRK11247 ssuB aliphatic sulfon 75.9 2.2 4.8E-05 43.4 3.0 23 179-201 39-61 (257)
450 COG1136 SalX ABC-type antimicr 75.9 2.4 5.1E-05 41.6 3.0 24 179-202 32-55 (226)
451 COG2884 FtsE Predicted ATPase 75.9 3.8 8.2E-05 38.5 4.1 34 178-214 28-61 (223)
452 PRK07940 DNA polymerase III su 75.8 4.2 9.1E-05 44.1 5.2 45 157-201 5-59 (394)
453 PRK14950 DNA polymerase III su 75.8 4.3 9.2E-05 46.9 5.6 49 154-202 13-62 (585)
454 cd03240 ABC_Rad50 The catalyti 75.8 2.3 4.9E-05 41.6 2.9 22 179-200 23-44 (204)
455 cd03268 ABC_BcrA_bacitracin_re 75.8 2.3 5E-05 41.7 3.0 23 179-201 27-49 (208)
456 PRK09435 membrane ATPase/prote 75.8 7.4 0.00016 41.0 6.8 37 167-203 43-81 (332)
457 cd03246 ABCC_Protease_Secretio 75.7 2.4 5.3E-05 40.1 3.0 24 179-202 29-52 (173)
458 cd03232 ABC_PDR_domain2 The pl 75.7 2.3 5E-05 41.1 2.9 22 179-200 34-55 (192)
459 COG4559 ABC-type hemin transpo 75.7 2.3 5E-05 40.6 2.7 23 179-201 28-50 (259)
460 cd02032 Bchl_like This family 75.7 2.1 4.5E-05 44.0 2.8 22 180-201 2-23 (267)
461 PF07726 AAA_3: ATPase family 75.6 1.2 2.7E-05 39.0 0.8 22 181-202 2-23 (131)
462 PRK10908 cell division protein 75.6 2.3 5E-05 42.2 3.0 24 178-201 28-51 (222)
463 PRK06647 DNA polymerase III su 75.5 4.2 9.1E-05 46.4 5.3 50 153-202 12-62 (563)
464 PRK11124 artP arginine transpo 75.4 2.3 5E-05 42.9 3.0 23 179-201 29-51 (242)
465 cd00876 Ras Ras family. The R 75.4 2.3 4.9E-05 39.4 2.7 21 181-201 2-22 (160)
466 TIGR00972 3a0107s01c2 phosphat 75.4 2.2 4.9E-05 43.2 2.9 24 178-201 27-50 (247)
467 KOG0738 AAA+-type ATPase [Post 75.4 3 6.4E-05 43.6 3.6 47 157-203 212-270 (491)
468 cd03266 ABC_NatA_sodium_export 75.4 2.3 5.1E-05 42.0 3.0 23 179-201 32-54 (218)
469 PRK14494 putative molybdopteri 75.3 3.1 6.8E-05 41.1 3.7 25 179-203 2-26 (229)
470 cd01876 YihA_EngB The YihA (En 75.3 2.1 4.5E-05 40.0 2.5 20 181-200 2-21 (170)
471 cd03233 ABC_PDR_domain1 The pl 75.3 2.3 4.9E-05 41.5 2.8 24 179-202 34-57 (202)
472 cd04119 RJL RJL (RabJ-Like) su 75.3 2.3 5E-05 39.7 2.8 21 181-201 3-23 (168)
473 PRK09544 znuC high-affinity zi 75.3 2.4 5.1E-05 43.1 3.0 23 179-201 31-53 (251)
474 PRK14245 phosphate ABC transpo 75.3 2.3 5.1E-05 43.1 3.0 23 178-200 29-51 (250)
475 cd03230 ABC_DR_subfamily_A Thi 75.3 2.5 5.4E-05 40.1 3.0 23 179-201 27-49 (173)
476 TIGR00231 small_GTP small GTP- 75.2 2.2 4.8E-05 39.2 2.6 22 180-201 3-24 (161)
477 cd03273 ABC_SMC2_euk Eukaryoti 75.2 2.5 5.5E-05 42.9 3.2 25 177-201 24-48 (251)
478 cd03218 ABC_YhbG The ABC trans 75.2 2.4 5.1E-05 42.5 3.0 23 179-201 27-49 (232)
479 smart00175 RAB Rab subfamily o 75.2 2.2 4.7E-05 39.8 2.6 22 180-201 2-23 (164)
480 PF00071 Ras: Ras family; Int 75.2 2.7 5.9E-05 39.1 3.2 21 181-201 2-22 (162)
481 TIGR01978 sufC FeS assembly AT 75.2 2.3 5E-05 43.0 2.9 23 179-201 27-49 (243)
482 cd04159 Arl10_like Arl10-like 75.1 2.2 4.8E-05 39.3 2.6 21 181-201 2-22 (159)
483 cd03262 ABC_HisP_GlnQ_permease 75.1 2.4 5.3E-05 41.7 3.0 23 179-201 27-49 (213)
484 PRK07133 DNA polymerase III su 75.1 4.1 8.9E-05 47.3 5.1 49 153-201 14-63 (725)
485 cd03214 ABC_Iron-Siderophores_ 75.1 2.5 5.5E-05 40.3 3.0 24 179-202 26-49 (180)
486 cd00154 Rab Rab family. Rab G 75.1 2.2 4.8E-05 39.2 2.6 22 181-202 3-24 (159)
487 TIGR01277 thiQ thiamine ABC tr 75.1 2.4 5.3E-05 41.7 3.0 24 179-202 25-48 (213)
488 PRK14242 phosphate transporter 75.1 2.4 5.2E-05 43.1 3.0 23 179-201 33-55 (253)
489 TIGR01241 FtsH_fam ATP-depende 75.0 5.1 0.00011 45.3 5.9 48 155-202 53-112 (495)
490 PRK13976 thymidylate kinase; P 75.0 7.1 0.00015 38.2 6.1 25 180-204 2-26 (209)
491 cd03247 ABCC_cytochrome_bd The 75.0 2.5 5.5E-05 40.2 3.0 24 179-202 29-52 (178)
492 cd03279 ABC_sbcCD SbcCD and ot 75.0 2.3 5E-05 41.9 2.8 21 179-199 29-49 (213)
493 TIGR01243 CDC48 AAA family ATP 75.0 3.9 8.4E-05 48.8 5.1 48 155-202 176-236 (733)
494 PRK14247 phosphate ABC transpo 75.0 2.4 5.2E-05 43.0 3.0 23 179-201 30-52 (250)
495 cd03252 ABCC_Hemolysin The ABC 75.0 2.4 5.2E-05 42.6 3.0 25 178-202 28-52 (237)
496 PLN02924 thymidylate kinase 74.9 6.7 0.00014 38.7 5.9 27 179-205 17-43 (220)
497 TIGR02324 CP_lyasePhnL phospho 74.9 2.4 5.3E-05 42.1 3.0 24 179-202 35-58 (224)
498 cd03216 ABC_Carb_Monos_I This 74.9 2.6 5.7E-05 39.4 3.0 23 179-201 27-49 (163)
499 cd03267 ABC_NatA_like Similar 74.9 2.4 5.3E-05 42.5 3.0 23 179-201 48-70 (236)
500 PRK12724 flagellar biosynthesi 74.9 3.6 7.8E-05 44.4 4.3 25 178-202 223-247 (432)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=2.7e-39 Score=372.60 Aligned_cols=365 Identities=26% Similarity=0.333 Sum_probs=271.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------hhccc
Q 003090 40 EALRTEAKKLTDRRNDLQAEIDAATRNREVIKDEVKSWIAEVNDIIPKAEKFLEDEVK-----------------VNKKC 102 (848)
Q Consensus 40 ~~~~~~l~~L~~~l~~i~~~l~~a~~~~~~~~~~v~~wl~~lk~~~~d~eD~lde~~~-----------------~~~~~ 102 (848)
.+.++.+..|++.+..++.++++|+++ +.....+..|.+.+++++|++||+++.+.. .+.-|
T Consensus 24 ~~~~~~i~~Lk~~L~~l~~~l~d~~a~-~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~~~l~~~~~~~~~~c 102 (889)
T KOG4658|consen 24 DGKDNYILELKENLKALQSALEDLDAK-RDDLERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKANDLLSTRSVERQRLC 102 (889)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhHHHHHHHh
Confidence 377889999999999999999999998 788999999999999999999999998821 12233
Q ss_pred cCCccc-chhhHhHHhHHHHHHHHHHHHHHHcCCCCCcccc-CCCCCCcccCCc-ccccccchhHHHHHHHHHHhcCCcc
Q 003090 103 LGGLCV-DLKSRYKLSREAEEKTLAMSALMAVGNFGKGVSR-PAPPPAIISSSE-GVYAFKSRESTMKDIMEAMKDENVS 179 (848)
Q Consensus 103 ~~~~~~-~~~~~~~~~~~i~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~vG~~~~~~~i~~~L~~~~~~ 179 (848)
+.+++. .....+.+++++.++.+.++.+..++.|+. +.. ..++......+. .+.. ||.++.++++++.|.+++..
T Consensus 103 ~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~-~~~~~~~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d~~~ 180 (889)
T KOG4658|consen 103 LCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEV-VGESLDPREKVETRPIQSESD-VGLETMLEKLWNRLMEDDVG 180 (889)
T ss_pred hhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceec-ccccccchhhcccCCCCcccc-ccHHHHHHHHHHHhccCCCC
Confidence 334442 345566778888888888888877776766 332 223333333333 2223 99999999999999988889
Q ss_pred EEEEEeCCCCchhHHHHHHHHHHh-hccccCcEEEEEeccCCchhHHHHHHHhccCCCc---------------------
Q 003090 180 ITGICGMGGVGKTTLVKEIQKQAK-EMKMFDDVAMAVVSQTPSITKIQYEIAGWLDLTG--------------------- 237 (848)
Q Consensus 180 vi~i~G~gG~GKTtla~~v~~~~~-~~~~F~~~~wv~vs~~~~~~~l~~~i~~~~~l~~--------------------- 237 (848)
+++|+||||+||||||+.|||+.. ++.+||.++||+||++|+...++++|++.+....
T Consensus 181 iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~ 260 (889)
T KOG4658|consen 181 IVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEG 260 (889)
T ss_pred EEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhcc
Confidence 999999999999999999999998 9999999999999999999999999999665411
Q ss_pred --------------------------------------------------------------------------------
Q 003090 238 -------------------------------------------------------------------------------- 237 (848)
Q Consensus 238 -------------------------------------------------------------------------------- 237 (848)
T Consensus 261 krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~ 340 (889)
T KOG4658|consen 261 KRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPD 340 (889)
T ss_pred CceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhcccccccccc
Confidence
Q ss_pred ------------------------------------------------------------eeeecC--------------
Q 003090 238 ------------------------------------------------------------ISLMFN-------------- 243 (848)
Q Consensus 238 ------------------------------------------------------------l~l~~n-------------- 243 (848)
+.+|+.
T Consensus 341 i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLyca 420 (889)
T KOG4658|consen 341 IEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCA 420 (889)
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhc
Confidence 000000
Q ss_pred --------------------------------------------------------------------------------
Q 003090 244 -------------------------------------------------------------------------------- 243 (848)
Q Consensus 244 -------------------------------------------------------------------------------- 243 (848)
T Consensus 421 lFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~ 500 (889)
T KOG4658|consen 421 LFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGK 500 (889)
T ss_pred cCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccc
Confidence
Q ss_pred -----------CCcccCCcccccccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCC--CCCCCC
Q 003090 244 -----------DIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPP--LPSSPL 310 (848)
Q Consensus 244 -----------~l~~lp~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~--l~~~~~ 310 (848)
...+.|+.......|...+-+|.+..++.+ ...+.|++|-+.+ +. +...
T Consensus 501 ~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~--~~~~~L~tLll~~--------------n~~~l~~i-- 562 (889)
T KOG4658|consen 501 QEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGS--SENPKLRTLLLQR--------------NSDWLLEI-- 562 (889)
T ss_pred cccceEEECCcCccccccccchhheeEEEEeccchhhccCC--CCCCccceEEEee--------------cchhhhhc--
Confidence 111122222334445555555555555554 3566788888888 43 4441
Q ss_pred CCCCchhhhcccCcEEEccCcccc-CCchhhccccCCCEEEccCCCCcccChhhccCCcccEEeccCCccccccChhhhh
Q 003090 311 FLLPSSLSFLINLRTLRLHDRRIQ-GDLSLIGELSGLEILDLSESDVSEIPVSFGRLSHLRLLDLTGCYILELIPRGVLS 389 (848)
Q Consensus 311 ~~lp~~~~~l~~L~~L~L~~~~~~-~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~l~ 389 (848)
-+..|..+++|++|||++|.-. ..|..|++|.+||+|+++++.++.+|.++++|.+|.+|++..+.....+|.. ..
T Consensus 563 --s~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i-~~ 639 (889)
T KOG4658|consen 563 --SGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGI-LL 639 (889)
T ss_pred --CHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccch-hh
Confidence 2234778999999999987554 4568999999999999999999999999999999999999987776666553 67
Q ss_pred ccccccEEeccccccccccccccccccCcccchhhhcccCCCcEEEeecc
Q 003090 390 RLRKLEELYMSHSFRHWQFESESEEDSSSNAKFIELGALSRLTSLHIHIP 439 (848)
Q Consensus 390 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~ 439 (848)
.|.+|++|.+...... .......++.++.+|+.+.+...
T Consensus 640 ~L~~Lr~L~l~~s~~~-----------~~~~~l~el~~Le~L~~ls~~~~ 678 (889)
T KOG4658|consen 640 ELQSLRVLRLPRSALS-----------NDKLLLKELENLEHLENLSITIS 678 (889)
T ss_pred hcccccEEEeeccccc-----------cchhhHHhhhcccchhhheeecc
Confidence 7999999998766421 22335666777777777766443
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.1e-31 Score=327.94 Aligned_cols=390 Identities=20% Similarity=0.238 Sum_probs=229.9
Q ss_pred cChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCCCCchhhhcc-cCcEEEccCccccCCchhhccccCCCE
Q 003090 270 IPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLPSSLSFLI-NLRTLRLHDRRIQGDLSLIGELSGLEI 348 (848)
Q Consensus 270 ~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp~~~~~l~-~L~~L~L~~~~~~~~~~~i~~l~~L~~ 348 (848)
+....|.+|++|+.|.+..++... .+.+... +|..+..++ +||+|++.++.....|..+ ...+|++
T Consensus 549 i~~~aF~~m~~L~~L~~~~~~~~~--------~~~~~~~----lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~ 615 (1153)
T PLN03210 549 IHENAFKGMRNLLFLKFYTKKWDQ--------KKEVRWH----LPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVK 615 (1153)
T ss_pred ecHHHHhcCccccEEEEecccccc--------cccceee----cCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcE
Confidence 344557788888888876521000 0112222 566666664 5888888888666666555 5688888
Q ss_pred EEccCCCCcccChhhccCCcccEEeccCCccccccChhhhhccccccEEeccccccccccccccccccCcccchhhhccc
Q 003090 349 LDLSESDVSEIPVSFGRLSHLRLLDLTGCYILELIPRGVLSRLRKLEELYMSHSFRHWQFESESEEDSSSNAKFIELGAL 428 (848)
Q Consensus 349 L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~l 428 (848)
|++.++.+..+|.++..+++|+.|++++|..++.+|. ++.+++|++|++.+|..... .+..++++
T Consensus 616 L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~-------------lp~si~~L 680 (1153)
T PLN03210 616 LQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVE-------------LPSSIQYL 680 (1153)
T ss_pred EECcCccccccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccc-------------cchhhhcc
Confidence 8888888888888888888888888888777777775 68888888888888764433 55677888
Q ss_pred CCCcEEEeeccC-CCCCCCCCccCCCCeEEEEeCCCCCCCCCcccceEEecccccccccccCccccchhhHHHHHHHHHh
Q 003090 429 SRLTSLHIHIPE-GKIMPSDMSFQNLTSFSIAIGDLEERPLSDFIGLFLQKFKKRCSRAMGLSQDMRISALHSWIKNLLL 507 (848)
Q Consensus 429 ~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~~~c~~~~~l~~~~~l~~l~~~~~~~~~ 507 (848)
++|+.|++++|. +..+|..+.+++|+.|.+.+
T Consensus 681 ~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsg----------------------------------------------- 713 (1153)
T PLN03210 681 NKLEDLDMSRCENLEILPTGINLKSLYRLNLSG----------------------------------------------- 713 (1153)
T ss_pred CCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCC-----------------------------------------------
Confidence 888888888753 55666555555566555542
Q ss_pred hcceeeeccccccccccccccccCCCCCcEEEEecCCCceeecccccccccccCCCccEEeccccccccccccc-----c
Q 003090 508 RSEILALAEVNYFENIVSDLANDGFNELMFLVIFRCNEMKYLLNSLERTLRVTLHKLEWLFIRENQNFVEICHG-----Q 582 (848)
Q Consensus 508 ~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~-----~ 582 (848)
|..++.++. ..++|++|.+.++. ++.+ +....+++|++|.+.++.... ++.. .
T Consensus 714 ---------c~~L~~~p~-----~~~nL~~L~L~~n~-i~~l------P~~~~l~~L~~L~l~~~~~~~-l~~~~~~l~~ 771 (1153)
T PLN03210 714 ---------CSRLKSFPD-----ISTNISWLDLDETA-IEEF------PSNLRLENLDELILCEMKSEK-LWERVQPLTP 771 (1153)
T ss_pred ---------CCCcccccc-----ccCCcCeeecCCCc-cccc------cccccccccccccccccchhh-ccccccccch
Confidence 222211111 11344444444332 2211 111124444444444432111 0000 0
Q ss_pred cccccCCCcceEEEecCchhhHhhhHHHHHhhccCcEEEEeccCCceeeeeccccccccccccccCCcCEEecCCCcccc
Q 003090 583 LPAGCLSNVKRSDVVDCGSILKILLSHLVQSFQNLQRLRVYSCGLLVSVFEIERVNIAKEETELFSSLEKLTLWDLPRMT 662 (848)
Q Consensus 583 ~~~~~l~~L~~L~l~~c~~l~~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~ 662 (848)
.....+++|+.|++++|+.+ ..+|..+ +.+++|+.|+|++|..++.+|. .. .+++|++|++++|..+.
T Consensus 772 ~~~~~~~sL~~L~Ls~n~~l-~~lP~si-~~L~~L~~L~Ls~C~~L~~LP~---------~~-~L~sL~~L~Ls~c~~L~ 839 (1153)
T PLN03210 772 LMTMLSPSLTRLFLSDIPSL-VELPSSI-QNLHKLEHLEIENCINLETLPT---------GI-NLESLESLDLSGCSRLR 839 (1153)
T ss_pred hhhhccccchheeCCCCCCc-cccChhh-hCCCCCCEEECCCCCCcCeeCC---------CC-CccccCEEECCCCCccc
Confidence 00112456777777777666 6666653 6677777777777777776652 11 56677777777777766
Q ss_pred ccccCCCccccccCccEEEeecCccccccccCccccccccceeeeccccccceeeeecCCCCCCCCCCCCccEEEEecCC
Q 003090 663 DIWKGDTQFVSLHNLKKVRVEECDELRQVFPANFGKKAAAEEMVLYRKRRDQIHIHATTSTSSPTPSLGNLVSITIRGCG 742 (848)
Q Consensus 663 ~l~~~~~~l~~l~~L~~L~i~~C~~L~~~~p~~~~~~~~~~~l~l~~l~~~~l~i~~c~~~~~~~~~l~~L~~L~i~~C~ 742 (848)
.++.. .++|+.|++++. .++. .|..+..+++|+.|++.+|+
T Consensus 840 ~~p~~------~~nL~~L~Ls~n-~i~~--------------------------------iP~si~~l~~L~~L~L~~C~ 880 (1153)
T PLN03210 840 TFPDI------STNISDLNLSRT-GIEE--------------------------------VPWWIEKFSNLSFLDMNGCN 880 (1153)
T ss_pred ccccc------ccccCEeECCCC-CCcc--------------------------------ChHHHhcCCCCCEEECCCCC
Confidence 65432 356666666553 2222 24445677888888888888
Q ss_pred CCceecccchhhccccccEEEEecccccceeecCCcccccccCCCccceeccccccccccccccccc
Q 003090 743 KLRNLFTTSMVKSLVRLESLEVRSCPTLQEIIMDDEGEVGLQGASTKKITFPSLFGIKLCDLDSLAC 809 (848)
Q Consensus 743 ~L~~l~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~~l~~~~~~~~~~~sL~~L~i~~cp~L~~ 809 (848)
+|+.+|. ....+++|+.|++.+|++|..+...................+|+...+.+.+|.+|.+
T Consensus 881 ~L~~l~~--~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~~ 945 (1153)
T PLN03210 881 NLQRVSL--NISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLDQ 945 (1153)
T ss_pred CcCccCc--ccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCCc
Confidence 8888764 3567788888888888888765322110000000000011244555566777777653
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=8.3e-32 Score=330.36 Aligned_cols=482 Identities=19% Similarity=0.199 Sum_probs=260.0
Q ss_pred HHHHHhccCCCceeeecCCCc-ccCCcc--cccccceeecccCcCc-ccChHHHccCCceeEEEccCcccccccccCCCC
Q 003090 226 QYEIAGWLDLTGISLMFNDIH-EVPDEL--ECPKLQALFLQENSPL-AIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFL 301 (848)
Q Consensus 226 ~~~i~~~~~l~~l~l~~n~l~-~lp~~~--~~~~L~~L~l~~~~~~-~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~ 301 (848)
...+.....++.|++++|.+. .+|..+ .+++|++|++++|.+. .+|. ..+++|++|++++
T Consensus 86 ~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L~Ls~------------- 149 (968)
T PLN00113 86 SSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNLETLDLSN------------- 149 (968)
T ss_pred ChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---cccCCCCEEECcC-------------
Confidence 344445556677777777765 566554 6677777777777543 3443 3566777777777
Q ss_pred CCCCCCCCCCCCCchhhhcccCcEEEccCccccCC-chhhccccCCCEEEccCCCCc-ccChhhccCCcccEEeccCCcc
Q 003090 302 FPPLPSSPLFLLPSSLSFLINLRTLRLHDRRIQGD-LSLIGELSGLEILDLSESDVS-EIPVSFGRLSHLRLLDLTGCYI 379 (848)
Q Consensus 302 ~~~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~-~~~i~~l~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~l~~~~~ 379 (848)
+.+.+. +|..++.+++|++|++++|.+.+. +..++++++|++|++++|.+. .+|..++++++|++|++++|..
T Consensus 150 -n~~~~~----~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 224 (968)
T PLN00113 150 -NMLSGE----IPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNL 224 (968)
T ss_pred -Cccccc----CChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCcc
Confidence 556544 666777777777777777765543 356677777777777777665 5677777777777777777766
Q ss_pred ccccChhhhhccccccEEeccccccccccccccccccCcccchhhhcccCCCcEEEeeccCCC-CCCCCC-ccCCCCeEE
Q 003090 380 LELIPRGVLSRLRKLEELYMSHSFRHWQFESESEEDSSSNAKFIELGALSRLTSLHIHIPEGK-IMPSDM-SFQNLTSFS 457 (848)
Q Consensus 380 ~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~-~~~~~~-~~~~L~~L~ 457 (848)
.+.+|.. ++++++|++|++++|.+... .+..++++++|+.|++++|.+. .+|..+ .+++|+.|+
T Consensus 225 ~~~~p~~-l~~l~~L~~L~L~~n~l~~~-------------~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 290 (968)
T PLN00113 225 SGEIPYE-IGGLTSLNHLDLVYNNLTGP-------------IPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLD 290 (968)
T ss_pred CCcCChh-HhcCCCCCEEECcCceeccc-------------cChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEE
Confidence 6666666 67777777777777766544 4456666777777777766654 344444 566677776
Q ss_pred EEeCCC------CCCCCCcccceEEecccccccccccCccccchhhHHHHHHHHHhhcceeeeccccccccccccccccC
Q 003090 458 IAIGDL------EERPLSDFIGLFLQKFKKRCSRAMGLSQDMRISALHSWIKNLLLRSEILALAEVNYFENIVSDLANDG 531 (848)
Q Consensus 458 l~~~~~------~~~~~~~l~~l~l~~~~~~c~~~~~l~~~~~l~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 531 (848)
+..+.. +....+.++.+.+.+.. -...+|.++.. +++|+.|.+.++......+..+ ..
T Consensus 291 Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~-------------~~~~~~~~~~~-l~~L~~L~L~~n~l~~~~p~~l--~~ 354 (968)
T PLN00113 291 LSDNSLSGEIPELVIQLQNLEILHLFSNN-------------FTGKIPVALTS-LPRLQVLQLWSNKFSGEIPKNL--GK 354 (968)
T ss_pred CcCCeeccCCChhHcCCCCCcEEECCCCc-------------cCCcCChhHhc-CCCCCEEECcCCCCcCcCChHH--hC
Confidence 664433 12222333333332211 00122222222 3566666666665544444333 34
Q ss_pred CCCCcEEEEecCCCceeecccccccccccCCCccEEecccccccccccccccccccCCCcceEEEecCchhhHhhhHHHH
Q 003090 532 FNELMFLVIFRCNEMKYLLNSLERTLRVTLHKLEWLFIRENQNFVEICHGQLPAGCLSNVKRSDVVDCGSILKILLSHLV 611 (848)
Q Consensus 532 l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~l~~~~~ 611 (848)
+++|+.|+++++.....++ .....+++|+.|++.++. +.... ....+.+++|+.|++.+|.-. ..+|..+
T Consensus 355 ~~~L~~L~Ls~n~l~~~~p-----~~~~~~~~L~~L~l~~n~-l~~~~--p~~~~~~~~L~~L~L~~n~l~-~~~p~~~- 424 (968)
T PLN00113 355 HNNLTVLDLSTNNLTGEIP-----EGLCSSGNLFKLILFSNS-LEGEI--PKSLGACRSLRRVRLQDNSFS-GELPSEF- 424 (968)
T ss_pred CCCCcEEECCCCeeEeeCC-----hhHhCcCCCCEEECcCCE-ecccC--CHHHhCCCCCCEEECcCCEee-eECChhH-
Confidence 5666666666654322211 112234556666666553 21110 001124566666666665433 3444432
Q ss_pred HhhccCcEEEEeccCCceeeeeccccccccccccccCCcCEEecCCCccccccccCCCccccccCccEEEeecCcccccc
Q 003090 612 QSFQNLQRLRVYSCGLLVSVFEIERVNIAKEETELFSSLEKLTLWDLPRMTDIWKGDTQFVSLHNLKKVRVEECDELRQV 691 (848)
Q Consensus 612 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~l~~l~~L~~L~i~~C~~L~~~ 691 (848)
..+++|+.|++++|.-...++ ..+..+++|+.|++++|.-...+|.. ...++|+.|++++|. +...
T Consensus 425 ~~l~~L~~L~Ls~N~l~~~~~---------~~~~~l~~L~~L~L~~n~~~~~~p~~----~~~~~L~~L~ls~n~-l~~~ 490 (968)
T PLN00113 425 TKLPLVYFLDISNNNLQGRIN---------SRKWDMPSLQMLSLARNKFFGGLPDS----FGSKRLENLDLSRNQ-FSGA 490 (968)
T ss_pred hcCCCCCEEECcCCcccCccC---------hhhccCCCCcEEECcCceeeeecCcc----cccccceEEECcCCc-cCCc
Confidence 556666666666554332222 22345566666666666544443332 123566666666653 2222
Q ss_pred ccCccccccccceeeeccccccceeeeec---CCCCCCCCCCCCccEEEEecCCCCceecccchhhccccccEEEEeccc
Q 003090 692 FPANFGKKAAAEEMVLYRKRRDQIHIHAT---TSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVRSCP 768 (848)
Q Consensus 692 ~p~~~~~~~~~~~l~l~~l~~~~l~i~~c---~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~ 768 (848)
.|..+.. +.++ ..+++.+| ...|..+..+++|+.|++++|.-...+| ..+.++++|++|++++|.
T Consensus 491 ~~~~~~~--------l~~L--~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p--~~~~~l~~L~~L~Ls~N~ 558 (968)
T PLN00113 491 VPRKLGS--------LSEL--MQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIP--ASFSEMPVLSQLDLSQNQ 558 (968)
T ss_pred cChhhhh--------hhcc--CEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCC--hhHhCcccCCEEECCCCc
Confidence 3333221 2223 33444443 1234455566666666666654322332 245566666666666665
Q ss_pred ccceeecCCcccccccCCCccceeccccccccccccccc
Q 003090 769 TLQEIIMDDEGEVGLQGASTKKITFPSLFGIKLCDLDSL 807 (848)
Q Consensus 769 ~L~~l~~~~~~~~~l~~~~~~~~~~~sL~~L~i~~cp~L 807 (848)
-...++. .+. .+++|+.|++++|+-.
T Consensus 559 l~~~~p~------~l~-------~l~~L~~l~ls~N~l~ 584 (968)
T PLN00113 559 LSGEIPK------NLG-------NVESLVQVNISHNHLH 584 (968)
T ss_pred ccccCCh------hHh-------cCcccCEEeccCCcce
Confidence 4333311 111 1456666666666633
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=7.1e-31 Score=322.13 Aligned_cols=482 Identities=19% Similarity=0.175 Sum_probs=355.2
Q ss_pred cCcEEEEEeccCCchhHHHHHHH-hccCCCceeeecCCCcccCCcccccccceeecccCcCc-ccChHHHccCCceeEEE
Q 003090 208 FDDVAMAVVSQTPSITKIQYEIA-GWLDLTGISLMFNDIHEVPDELECPKLQALFLQENSPL-AIPDRFFQGMKDLQVLD 285 (848)
Q Consensus 208 F~~~~wv~vs~~~~~~~l~~~i~-~~~~l~~l~l~~n~l~~lp~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~Lr~L~ 285 (848)
+...-...++.+.-...++..+. ....++.|++++|.+....+...+++|++|++++|.+. .+|.. ++++++|++|+
T Consensus 92 l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~-~~~l~~L~~L~ 170 (968)
T PLN00113 92 LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPND-IGSFSSLKVLD 170 (968)
T ss_pred CCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChH-HhcCCCCCEEE
Confidence 33444455665433346677776 56679999999999985433456899999999999775 56655 68999999999
Q ss_pred ccCcccccccccCCCCCCCCCCCCCCCCCchhhhcccCcEEEccCccccCC-chhhccccCCCEEEccCCCCc-ccChhh
Q 003090 286 LGGIRRFSFSVRFPFLFPPLPSSPLFLLPSSLSFLINLRTLRLHDRRIQGD-LSLIGELSGLEILDLSESDVS-EIPVSF 363 (848)
Q Consensus 286 l~~~~~~~~~~~~~~~~~~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~-~~~i~~l~~L~~L~l~~~~l~-~lp~~i 363 (848)
+++ +.+.+. +|..++++++|++|++++|.+.+. +..++++++|++|++++|.+. .+|..+
T Consensus 171 L~~--------------n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l 232 (968)
T PLN00113 171 LGG--------------NVLVGK----IPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEI 232 (968)
T ss_pred Ccc--------------Cccccc----CChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhH
Confidence 999 777765 899999999999999999988765 488999999999999999888 889999
Q ss_pred ccCCcccEEeccCCccccccChhhhhccccccEEeccccccccccccccccccCcccchhhhcccCCCcEEEeeccCCC-
Q 003090 364 GRLSHLRLLDLTGCYILELIPRGVLSRLRKLEELYMSHSFRHWQFESESEEDSSSNAKFIELGALSRLTSLHIHIPEGK- 442 (848)
Q Consensus 364 ~~L~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~- 442 (848)
+++++|++|++++|...+.+|.. ++++++|++|++++|.+.+. .+..+.++++|+.|++++|.+.
T Consensus 233 ~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~-------------~p~~l~~l~~L~~L~Ls~n~l~~ 298 (968)
T PLN00113 233 GGLTSLNHLDLVYNNLTGPIPSS-LGNLKNLQYLFLYQNKLSGP-------------IPPSIFSLQKLISLDLSDNSLSG 298 (968)
T ss_pred hcCCCCCEEECcCceeccccChh-HhCCCCCCEEECcCCeeecc-------------CchhHhhccCcCEEECcCCeecc
Confidence 99999999999999888888888 89999999999999987765 5667888999999999999876
Q ss_pred CCCCCC-ccCCCCeEEEEeCCC------CCCCCCcccceEEecccccccccccCccccchhhHHHHHHHHHhhcceeeec
Q 003090 443 IMPSDM-SFQNLTSFSIAIGDL------EERPLSDFIGLFLQKFKKRCSRAMGLSQDMRISALHSWIKNLLLRSEILALA 515 (848)
Q Consensus 443 ~~~~~~-~~~~L~~L~l~~~~~------~~~~~~~l~~l~l~~~~~~c~~~~~l~~~~~l~~l~~~~~~~~~~L~~L~l~ 515 (848)
.+|..+ .+++|+.|++..+.. +....+.++.+.+.... -...+|.++.. +++|+.|+++
T Consensus 299 ~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~-------------l~~~~p~~l~~-~~~L~~L~Ls 364 (968)
T PLN00113 299 EIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNK-------------FSGEIPKNLGK-HNNLTVLDLS 364 (968)
T ss_pred CCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCC-------------CcCcCChHHhC-CCCCcEEECC
Confidence 455555 788999999876654 23344556666665431 00234444443 4789999999
Q ss_pred cccccccccccccccCCCCCcEEEEecCCCceeecccccccccccCCCccEEecccccccccccccccccccCCCcceEE
Q 003090 516 EVNYFENIVSDLANDGFNELMFLVIFRCNEMKYLLNSLERTLRVTLHKLEWLFIRENQNFVEICHGQLPAGCLSNVKRSD 595 (848)
Q Consensus 516 ~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~l~~L~~L~ 595 (848)
++......+..+ ..+++|+.|.+.++.....+ ......+++|+.|++.+|. +.... ......+++|+.|+
T Consensus 365 ~n~l~~~~p~~~--~~~~~L~~L~l~~n~l~~~~-----p~~~~~~~~L~~L~L~~n~-l~~~~--p~~~~~l~~L~~L~ 434 (968)
T PLN00113 365 TNNLTGEIPEGL--CSSGNLFKLILFSNSLEGEI-----PKSLGACRSLRRVRLQDNS-FSGEL--PSEFTKLPLVYFLD 434 (968)
T ss_pred CCeeEeeCChhH--hCcCCCCEEECcCCEecccC-----CHHHhCCCCCCEEECcCCE-eeeEC--ChhHhcCCCCCEEE
Confidence 887665555544 35688999999888643332 1234568999999999885 32211 11123688999999
Q ss_pred EecCchhhHhhhHHHHHhhccCcEEEEeccCCceeeeeccccccccccccccCCcCEEecCCCccccccccCCCcccccc
Q 003090 596 VVDCGSILKILLSHLVQSFQNLQRLRVYSCGLLVSVFEIERVNIAKEETELFSSLEKLTLWDLPRMTDIWKGDTQFVSLH 675 (848)
Q Consensus 596 l~~c~~l~~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~l~~l~ 675 (848)
+++|.-. ..+|.. ...+++|+.|++++|.....+|. ....++|+.|++++|.-...++.. +..++
T Consensus 435 Ls~N~l~-~~~~~~-~~~l~~L~~L~L~~n~~~~~~p~----------~~~~~~L~~L~ls~n~l~~~~~~~---~~~l~ 499 (968)
T PLN00113 435 ISNNNLQ-GRINSR-KWDMPSLQMLSLARNKFFGGLPD----------SFGSKRLENLDLSRNQFSGAVPRK---LGSLS 499 (968)
T ss_pred CcCCccc-CccChh-hccCCCCcEEECcCceeeeecCc----------ccccccceEEECcCCccCCccChh---hhhhh
Confidence 9987643 444443 36789999999999977666542 224578999999988654444432 56788
Q ss_pred CccEEEeecCccccccccCccccccccceeeeccccccceeeeec---CCCCCCCCCCCCccEEEEecCCCCceecccch
Q 003090 676 NLKKVRVEECDELRQVFPANFGKKAAAEEMVLYRKRRDQIHIHAT---TSTSSPTPSLGNLVSITIRGCGKLRNLFTTSM 752 (848)
Q Consensus 676 ~L~~L~i~~C~~L~~~~p~~~~~~~~~~~l~l~~l~~~~l~i~~c---~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~ 752 (848)
+|+.|++++|. +....|..+.. +.+| +.+++.+| ...|..+..+++|++|++++|.-...+| ..
T Consensus 500 ~L~~L~Ls~N~-l~~~~p~~~~~--------l~~L--~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p--~~ 566 (968)
T PLN00113 500 ELMQLKLSENK-LSGEIPDELSS--------CKKL--VSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIP--KN 566 (968)
T ss_pred ccCEEECcCCc-ceeeCChHHcC--------ccCC--CEEECCCCcccccCChhHhCcccCCEEECCCCcccccCC--hh
Confidence 99999999874 44445654432 3444 55666665 2345667889999999999977555665 46
Q ss_pred hhccccccEEEEecccccceee
Q 003090 753 VKSLVRLESLEVRSCPTLQEII 774 (848)
Q Consensus 753 ~~~l~~L~~L~i~~C~~L~~l~ 774 (848)
+.++++|+.|++++|+-...++
T Consensus 567 l~~l~~L~~l~ls~N~l~~~~p 588 (968)
T PLN00113 567 LGNVESLVQVNISHNHLHGSLP 588 (968)
T ss_pred HhcCcccCEEeccCCcceeeCC
Confidence 7889999999999998766664
No 5
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=7.2e-23 Score=250.84 Aligned_cols=353 Identities=22% Similarity=0.312 Sum_probs=263.1
Q ss_pred ccCCcc-cc-cccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCCCCchhhhcccCc
Q 003090 247 EVPDEL-EC-PKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLPSSLSFLINLR 324 (848)
Q Consensus 247 ~lp~~~-~~-~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp~~~~~l~~L~ 324 (848)
.+|..+ .+ .+|+.|.+.++....+|..+ ...+|+.|++.+ +.+.. +|..+..+++|+
T Consensus 579 ~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f--~~~~L~~L~L~~--------------s~l~~-----L~~~~~~l~~Lk 637 (1153)
T PLN03210 579 HLPEGFDYLPPKLRLLRWDKYPLRCMPSNF--RPENLVKLQMQG--------------SKLEK-----LWDGVHSLTGLR 637 (1153)
T ss_pred ecCcchhhcCcccEEEEecCCCCCCCCCcC--CccCCcEEECcC--------------ccccc-----cccccccCCCCC
Confidence 345544 22 46888888888888888764 567888888888 77777 888888899999
Q ss_pred EEEccCccccCCchhhccccCCCEEEccCC-CCcccChhhccCCcccEEeccCCccccccChhhhhccccccEEeccccc
Q 003090 325 TLRLHDRRIQGDLSLIGELSGLEILDLSES-DVSEIPVSFGRLSHLRLLDLTGCYILELIPRGVLSRLRKLEELYMSHSF 403 (848)
Q Consensus 325 ~L~L~~~~~~~~~~~i~~l~~L~~L~l~~~-~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~ 403 (848)
+|+++++.....++.++.+++|++|++++| .+..+|..++++++|++|++++|..++.+|.. + ++++|+.|++++|.
T Consensus 638 ~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL~~L~Lsgc~ 715 (1153)
T PLN03210 638 NIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-I-NLKSLYRLNLSGCS 715 (1153)
T ss_pred EEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc-C-CCCCCCEEeCCCCC
Confidence 999998876666677888999999999887 56688999999999999999998888888886 3 78899999998886
Q ss_pred cccccccccccccCcccchhhhcccCCCcEEEeeccCCCCCCCCCccCCCCeEEEEeCCCCCCCCCcccceEEecccccc
Q 003090 404 RHWQFESESEEDSSSNAKFIELGALSRLTSLHIHIPEGKIMPSDMSFQNLTSFSIAIGDLEERPLSDFIGLFLQKFKKRC 483 (848)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~~~c 483 (848)
....++ . ...+|+.|+++++.+..+|..+.+++|..|.+..+... .+..
T Consensus 716 ~L~~~p-------------~---~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~----------~l~~----- 764 (1153)
T PLN03210 716 RLKSFP-------------D---ISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSE----------KLWE----- 764 (1153)
T ss_pred Cccccc-------------c---ccCCcCeeecCCCccccccccccccccccccccccchh----------hccc-----
Confidence 443321 1 24578899999998888888777788888777532210 0000
Q ss_pred cccccCccccchhhHHHHHHHHHhhcceeeeccccccccccccccccCCCCCcEEEEecCCCceeecccccccccccCCC
Q 003090 484 SRAMGLSQDMRISALHSWIKNLLLRSEILALAEVNYFENIVSDLANDGFNELMFLVIFRCNEMKYLLNSLERTLRVTLHK 563 (848)
Q Consensus 484 ~~~~~l~~~~~l~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~p~ 563 (848)
.+..++......+++|+.|.+++|.....++..+ +.+++|+.|++.+|..++.++. ...+++
T Consensus 765 ----------~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si--~~L~~L~~L~Ls~C~~L~~LP~------~~~L~s 826 (1153)
T PLN03210 765 ----------RVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSI--QNLHKLEHLEIENCINLETLPT------GINLES 826 (1153)
T ss_pred ----------cccccchhhhhccccchheeCCCCCCccccChhh--hCCCCCCEEECCCCCCcCeeCC------CCCccc
Confidence 0011111122235789999999998887777765 5789999999999998887642 225899
Q ss_pred ccEEecccccccccccccccccccCCCcceEEEecCchhhHhhhHHHHHhhccCcEEEEeccCCceeeeecccccccccc
Q 003090 564 LEWLFIRENQNFVEICHGQLPAGCLSNVKRSDVVDCGSILKILLSHLVQSFQNLQRLRVYSCGLLVSVFEIERVNIAKEE 643 (848)
Q Consensus 564 L~~L~l~~~~~L~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~ 643 (848)
|++|++++|.++..+ +. ..++|+.|++.++ .+ +.+|..+ ..+++|+.|++.+|++++.++ ..
T Consensus 827 L~~L~Ls~c~~L~~~-----p~-~~~nL~~L~Ls~n-~i-~~iP~si-~~l~~L~~L~L~~C~~L~~l~---------~~ 888 (1153)
T PLN03210 827 LESLDLSGCSRLRTF-----PD-ISTNISDLNLSRT-GI-EEVPWWI-EKFSNLSFLDMNGCNNLQRVS---------LN 888 (1153)
T ss_pred cCEEECCCCCccccc-----cc-cccccCEeECCCC-CC-ccChHHH-hcCCCCCEEECCCCCCcCccC---------cc
Confidence 999999999887654 21 3578999999884 67 7888764 789999999999999999986 45
Q ss_pred ccccCCcCEEecCCCccccccccCCCc----------cccccCccEEEeecCcccc
Q 003090 644 TELFSSLEKLTLWDLPRMTDIWKGDTQ----------FVSLHNLKKVRVEECDELR 689 (848)
Q Consensus 644 ~~~l~~L~~L~l~~c~~L~~l~~~~~~----------l~~l~~L~~L~i~~C~~L~ 689 (848)
...+++|+.|++++|++|+.++....+ ...+|+...+.+.+|.++.
T Consensus 889 ~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~ 944 (1153)
T PLN03210 889 ISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLD 944 (1153)
T ss_pred cccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCC
Confidence 668899999999999999865432211 1234455666777887775
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.87 E-value=6.6e-26 Score=223.99 Aligned_cols=453 Identities=17% Similarity=0.195 Sum_probs=271.1
Q ss_pred CchhHHHHHHHhccCCCceeeecCCCcccCCcc-cccccceeecccCcCcccChHHHccCCceeEEEccCcccccccccC
Q 003090 220 PSITKIQYEIAGWLDLTGISLMFNDIHEVPDEL-ECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRF 298 (848)
Q Consensus 220 ~~~~~l~~~i~~~~~l~~l~l~~n~l~~lp~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~ 298 (848)
.....++.+|.+...+..+++++|.+..+|+.+ ...+++.|+.+.|....+++++ +.+..|..++..+
T Consensus 78 n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i-~~~~~l~dl~~~~---------- 146 (565)
T KOG0472|consen 78 NKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSI-GRLLDLEDLDATN---------- 146 (565)
T ss_pred chhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchH-HHHhhhhhhhccc----------
Confidence 556667777777777777777888777777776 7777778888877777777775 4666777777777
Q ss_pred CCCCCCCCCCCCCCCCchhhhcccCcEEEccCccccCCchhhccccCCCEEEccCCCCcccChhhccCCcccEEeccCCc
Q 003090 299 PFLFPPLPSSPLFLLPSSLSFLINLRTLRLHDRRIQGDLSLIGELSGLEILDLSESDVSEIPVSFGRLSHLRLLDLTGCY 378 (848)
Q Consensus 299 ~~~~~~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~ 378 (848)
|++.. +|.++..+.+|..|++.+|.....++..-+++.|++||...|.++.+|+.++.+.+|..|+++.|.
T Consensus 147 ----N~i~s-----lp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nk 217 (565)
T KOG0472|consen 147 ----NQISS-----LPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNK 217 (565)
T ss_pred ----ccccc-----CchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcc
Confidence 77777 888888888888888888877777766555888888888888888888888888888888888864
Q ss_pred cccccChhhhhccccccEEeccccccccccccccccccCcccchhh-hcccCCCcEEEeeccCCCCCCCCC-ccCCCCeE
Q 003090 379 ILELIPRGVLSRLRKLEELYMSHSFRHWQFESESEEDSSSNAKFIE-LGALSRLTSLHIHIPEGKIMPSDM-SFQNLTSF 456 (848)
Q Consensus 379 ~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~-L~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L 456 (848)
...+|+ |..+..|.+|+++.|++.- .+++ ++++.+|..||+..|+++++|..+ .+++|+.|
T Consensus 218 -i~~lPe--f~gcs~L~Elh~g~N~i~~--------------lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rL 280 (565)
T KOG0472|consen 218 -IRFLPE--FPGCSLLKELHVGENQIEM--------------LPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERL 280 (565)
T ss_pred -cccCCC--CCccHHHHHHHhcccHHHh--------------hHHHHhcccccceeeeccccccccCchHHHHhhhhhhh
Confidence 456774 7888888888888777653 3444 458899999999999999999988 78889999
Q ss_pred EEEeCCCCCCCCCcccceEEecccccccccccCccccchhhHHHHHHHH--Hhhcceeee-ccccccccccccccccCCC
Q 003090 457 SIAIGDLEERPLSDFIGLFLQKFKKRCSRAMGLSQDMRISALHSWIKNL--LLRSEILAL-AEVNYFENIVSDLANDGFN 533 (848)
Q Consensus 457 ~l~~~~~~~~~~~~l~~l~l~~~~~~c~~~~~l~~~~~l~~l~~~~~~~--~~~L~~L~l-~~~~~~~~~~~~l~~~~l~ 533 (848)
+++++.. ..-+..+..+.+.... +.+ ..+..+...+-.. ..-|++|+= ..+.+. .
T Consensus 281 DlSNN~i-s~Lp~sLgnlhL~~L~-----leG----NPlrTiRr~ii~~gT~~vLKyLrs~~~~dgl------------S 338 (565)
T KOG0472|consen 281 DLSNNDI-SSLPYSLGNLHLKFLA-----LEG----NPLRTIRREIISKGTQEVLKYLRSKIKDDGL------------S 338 (565)
T ss_pred cccCCcc-ccCCcccccceeeehh-----hcC----CchHHHHHHHHcccHHHHHHHHHHhhccCCC------------C
Confidence 9886554 1112222222221110 000 0012222111100 001111110 000000 0
Q ss_pred CCcEEEEecCCCcee-ecccccc--cccccCCCccEEecccccccccccccccccccCCCcceEEEecCchhhHhhhHHH
Q 003090 534 ELMFLVIFRCNEMKY-LLNSLER--TLRVTLHKLEWLFIRENQNFVEICHGQLPAGCLSNVKRSDVVDCGSILKILLSHL 610 (848)
Q Consensus 534 ~L~~L~l~~~~~l~~-l~~~~~~--~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~l~~~~ 610 (848)
+ -..-+. -++.+.+ +.....-+.+.|.+++- +++.+....+..+.-.-....++++ .++ ..+|..+
T Consensus 339 ~--------se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~-qlt~VPdEVfea~~~~~Vt~Vnfsk-NqL-~elPk~L 407 (565)
T KOG0472|consen 339 Q--------SEGGTETAMTLPSESFPDIYAIITTKILDVSDK-QLTLVPDEVFEAAKSEIVTSVNFSK-NQL-CELPKRL 407 (565)
T ss_pred C--------CcccccccCCCCCCcccchhhhhhhhhhccccc-ccccCCHHHHHHhhhcceEEEeccc-chH-hhhhhhh
Confidence 0 000000 0000001 11222345566666554 3443322222222222245566666 355 6666654
Q ss_pred HHhhccCcEEEEeccCCceeeeeccccccccccccccCCcCEEecCCCccccccccCCCccccccCccEEEeecCccccc
Q 003090 611 VQSFQNLQRLRVYSCGLLVSVFEIERVNIAKEETELFSSLEKLTLWDLPRMTDIWKGDTQFVSLHNLKKVRVEECDELRQ 690 (848)
Q Consensus 611 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~l~~l~~L~~L~i~~C~~L~~ 690 (848)
..+..+.+.-+.+...+..++ ..+..+++|..|++++.+ |.++|... +.+..|++|+|+.- ....
T Consensus 408 -~~lkelvT~l~lsnn~isfv~---------~~l~~l~kLt~L~L~NN~-Ln~LP~e~---~~lv~Lq~LnlS~N-rFr~ 472 (565)
T KOG0472|consen 408 -VELKELVTDLVLSNNKISFVP---------LELSQLQKLTFLDLSNNL-LNDLPEEM---GSLVRLQTLNLSFN-RFRM 472 (565)
T ss_pred -HHHHHHHHHHHhhcCccccch---------HHHHhhhcceeeecccch-hhhcchhh---hhhhhhheeccccc-cccc
Confidence 445555554455555555554 457788888888888743 66777653 45667888888753 2222
Q ss_pred cccCccccccccceeeeccccccceeeeecCCCCCCCCCCCCccEEEEecCCCCceecccchhhccccccEEEEeccc
Q 003090 691 VFPANFGKKAAAEEMVLYRKRRDQIHIHATTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVRSCP 768 (848)
Q Consensus 691 ~~p~~~~~~~~~~~l~l~~l~~~~l~i~~c~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~ 768 (848)
.|.........|.+-.+.. +|.. -.+.++..+.+|.+|++.+ +.++.+|| .++++++|++|++.+.|
T Consensus 473 -lP~~~y~lq~lEtllas~n-----qi~~--vd~~~l~nm~nL~tLDL~n-Ndlq~IPp--~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 473 -LPECLYELQTLETLLASNN-----QIGS--VDPSGLKNMRNLTTLDLQN-NDLQQIPP--ILGNMTNLRHLELDGNP 539 (565)
T ss_pred -chHHHhhHHHHHHHHhccc-----cccc--cChHHhhhhhhcceeccCC-CchhhCCh--hhccccceeEEEecCCc
Confidence 2322211000011100100 0000 1134578888999999988 78999986 68899999999999887
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.86 E-value=6.9e-23 Score=211.81 Aligned_cols=355 Identities=19% Similarity=0.178 Sum_probs=216.9
Q ss_pred ceeeecCCCcccCCc--ccccccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCCCC
Q 003090 237 GISLMFNDIHEVPDE--LECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLP 314 (848)
Q Consensus 237 ~l~l~~n~l~~lp~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp 314 (848)
.|++++|.+..+... .++++|+.+++..|.+..+|.. .....+|..|+|.+ |.+... -.
T Consensus 82 ~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f-~~~sghl~~L~L~~--------------N~I~sv----~s 142 (873)
T KOG4194|consen 82 TLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRF-GHESGHLEKLDLRH--------------NLISSV----TS 142 (873)
T ss_pred eeeccccccccCcHHHHhcCCcceeeeeccchhhhcccc-cccccceeEEeeec--------------cccccc----cH
Confidence 366666666644333 2666666666666666666652 13344566666666 555543 23
Q ss_pred chhhhcccCcEEEccCccccCCc-hhhccccCCCEEEccCCCCcccCh-hhccCCcccEEeccCCccccccChhhhhccc
Q 003090 315 SSLSFLINLRTLRLHDRRIQGDL-SLIGELSGLEILDLSESDVSEIPV-SFGRLSHLRLLDLTGCYILELIPRGVLSRLR 392 (848)
Q Consensus 315 ~~~~~l~~L~~L~L~~~~~~~~~-~~i~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~~l~~l~ 392 (848)
+++..++.||.|||+.|.+...+ +.+..=.++++|+|++|.|+.+-. .+..+.+|-+|.++.|.. ..+|...|.+|+
T Consensus 143 e~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNri-ttLp~r~Fk~L~ 221 (873)
T KOG4194|consen 143 EELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRI-TTLPQRSFKRLP 221 (873)
T ss_pred HHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcc-cccCHHHhhhcc
Confidence 44566666666666666555555 556666666666666666665432 355666666666666543 446655566666
Q ss_pred cccEEeccccccccccccccccccCcccchhhhcccCCCcEEEeeccCCCCCCCCC--ccCCCCeEEEEeCCC------C
Q 003090 393 KLEELYMSHSFRHWQFESESEEDSSSNAKFIELGALSRLTSLHIHIPEGKIMPSDM--SFQNLTSFSIAIGDL------E 464 (848)
Q Consensus 393 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~------~ 464 (848)
+|+.|++..|.+... .-..+++|++|+.|.+..|++..+.... .+.+++.|++..+.. |
T Consensus 222 ~L~~LdLnrN~iriv-------------e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~ 288 (873)
T KOG4194|consen 222 KLESLDLNRNRIRIV-------------EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGW 288 (873)
T ss_pred hhhhhhccccceeee-------------hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccc
Confidence 677666666665432 2234566666666666666666655554 666666666655443 5
Q ss_pred CCCCCcccceEEecccccccccccCccccchhhHHHHHHHHHhhcceeeeccccccccccccccccCCCCCcEEEEecCC
Q 003090 465 ERPLSDFIGLFLQKFKKRCSRAMGLSQDMRISALHSWIKNLLLRSEILALAEVNYFENIVSDLANDGFNELMFLVIFRCN 544 (848)
Q Consensus 465 ~~~~~~l~~l~l~~~~~~c~~~~~l~~~~~l~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~ 544 (848)
......++.|.+... .+.+++..-....++|+.|+|+.+...+--...+ ..+..|++|.+.++.
T Consensus 289 lfgLt~L~~L~lS~N--------------aI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf--~~L~~Le~LnLs~Ns 352 (873)
T KOG4194|consen 289 LFGLTSLEQLDLSYN--------------AIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSF--RVLSQLEELNLSHNS 352 (873)
T ss_pred ccccchhhhhccchh--------------hhheeecchhhhcccceeEeccccccccCChhHH--HHHHHhhhhcccccc
Confidence 555555555554432 1233332223345789999998776443222222 346788888888774
Q ss_pred CceeecccccccccccCCCccEEecccccccccccccccccccCCCcceEEEecCchhhHhhhHHHHHhhccCcEEEEec
Q 003090 545 EMKYLLNSLERTLRVTLHKLEWLFIRENQNFVEICHGQLPAGCLSNVKRSDVVDCGSILKILLSHLVQSFQNLQRLRVYS 624 (848)
Q Consensus 545 ~l~~l~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~l~~~~~~~l~~L~~L~l~~ 624 (848)
+..+ .-..+..+.+|++|+|+++.--.-+-.+..+...+++|++|.+.+ +++ +.+|...+..+++|++|++.+
T Consensus 353 -i~~l----~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nql-k~I~krAfsgl~~LE~LdL~~ 425 (873)
T KOG4194|consen 353 -IDHL----AEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG-NQL-KSIPKRAFSGLEALEHLDLGD 425 (873)
T ss_pred -hHHH----HhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecC-cee-eecchhhhccCcccceecCCC
Confidence 3222 112455679999999998742111112223344699999999998 578 999998888999999999998
Q ss_pred cCCceeeeeccccccccccccccCCcCEEecCC
Q 003090 625 CGLLVSVFEIERVNIAKEETELFSSLEKLTLWD 657 (848)
Q Consensus 625 c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 657 (848)
+.-.+-.+ ..+..+ .|++|.+..
T Consensus 426 NaiaSIq~---------nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 426 NAIASIQP---------NAFEPM-ELKELVMNS 448 (873)
T ss_pred Ccceeecc---------cccccc-hhhhhhhcc
Confidence 76444333 345455 788887764
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.86 E-value=2.5e-22 Score=207.75 Aligned_cols=368 Identities=21% Similarity=0.198 Sum_probs=267.3
Q ss_pred ceeeecCCCcccCCcc----cccccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCC
Q 003090 237 GISLMFNDIHEVPDEL----ECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFL 312 (848)
Q Consensus 237 ~l~l~~n~l~~lp~~~----~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 312 (848)
-++.+++.+..+...- -.+.-++|++++|.+..+...+|.++++|+.+++.+ |.+..
T Consensus 56 lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~--------------N~Lt~----- 116 (873)
T KOG4194|consen 56 LLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNK--------------NELTR----- 116 (873)
T ss_pred eeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeecc--------------chhhh-----
Confidence 3677777776542211 124567799999999999888899999999999999 88888
Q ss_pred CCchhhhcccCcEEEccCccccCCc-hhhccccCCCEEEccCCCCcccCh-hhccCCcccEEeccCCccccccChhhhhc
Q 003090 313 LPSSLSFLINLRTLRLHDRRIQGDL-SLIGELSGLEILDLSESDVSEIPV-SFGRLSHLRLLDLTGCYILELIPRGVLSR 390 (848)
Q Consensus 313 lp~~~~~l~~L~~L~L~~~~~~~~~-~~i~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~~l~~ 390 (848)
+|...+...||+.|+|.+|.+...- +.+.-++.|+.|||+.|.|+++|. ++..-.++++|++++|.+ +.+..+.|..
T Consensus 117 IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~I-t~l~~~~F~~ 195 (873)
T KOG4194|consen 117 IPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRI-TTLETGHFDS 195 (873)
T ss_pred cccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccc-cccccccccc
Confidence 8988888889999999999666655 788999999999999999998875 466667899999999765 4466555889
Q ss_pred cccccEEeccccccccccccccccccCcccchhhhcccCCCcEEEeeccCCCCCCCC-C-ccCCCCeEEEEeCCCCCCCC
Q 003090 391 LRKLEELYMSHSFRHWQFESESEEDSSSNAKFIELGALSRLTSLHIHIPEGKIMPSD-M-SFQNLTSFSIAIGDLEERPL 468 (848)
Q Consensus 391 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~~ 468 (848)
+.+|-+|.++.|+++.. -+..+++|++|+.|++..|.+..+... + .+++|+.|.+..+..
T Consensus 196 lnsL~tlkLsrNrittL-------------p~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I----- 257 (873)
T KOG4194|consen 196 LNSLLTLKLSRNRITTL-------------PQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDI----- 257 (873)
T ss_pred cchheeeecccCccccc-------------CHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCc-----
Confidence 99999999999998765 456788899999999999987654322 2 666677666654432
Q ss_pred CcccceEEecccccccccccCccccchhhHHHHHHHHHhhcceeeeccccccccccccccccCCCCCcEEEEecCCCcee
Q 003090 469 SDFIGLFLQKFKKRCSRAMGLSQDMRISALHSWIKNLLLRSEILALAEVNYFENIVSDLANDGFNELMFLVIFRCNEMKY 548 (848)
Q Consensus 469 ~~l~~l~l~~~~~~c~~~~~l~~~~~l~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~ 548 (848)
..+....+-.+.+++.|+|+.+....--..|+ -++..|+.|+++.+..-+
T Consensus 258 ---------------------------~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~l--fgLt~L~~L~lS~NaI~r- 307 (873)
T KOG4194|consen 258 ---------------------------SKLDDGAFYGLEKMEHLNLETNRLQAVNEGWL--FGLTSLEQLDLSYNAIQR- 307 (873)
T ss_pred ---------------------------ccccCcceeeecccceeecccchhhhhhcccc--cccchhhhhccchhhhhe-
Confidence 22222222225678888887555433222333 367889999998874322
Q ss_pred ecccccccccccCCCccEEecccccccccccccccccccCCCcceEEEecCchhhHhhhHHHHHhhccCcEEEEeccCCc
Q 003090 549 LLNSLERTLRVTLHKLEWLFIRENQNFVEICHGQLPAGCLSNVKRSDVVDCGSILKILLSHLVQSFQNLQRLRVYSCGLL 628 (848)
Q Consensus 549 l~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~l~~~~~~~l~~L~~L~l~~c~~l 628 (848)
+ ......-.++|++|+|+.+ +++++..+.+ ..+..|++|.+++ +.+ ..+-...+..+.+|++|+++++.--
T Consensus 308 i----h~d~WsftqkL~~LdLs~N-~i~~l~~~sf--~~L~~Le~LnLs~-Nsi-~~l~e~af~~lssL~~LdLr~N~ls 378 (873)
T KOG4194|consen 308 I----HIDSWSFTQKLKELDLSSN-RITRLDEGSF--RVLSQLEELNLSH-NSI-DHLAEGAFVGLSSLHKLDLRSNELS 378 (873)
T ss_pred e----ecchhhhcccceeEecccc-ccccCChhHH--HHHHHhhhhcccc-cch-HHHHhhHHHHhhhhhhhcCcCCeEE
Confidence 2 1122234689999999988 5666533322 2577889999988 467 7888877788999999999986533
Q ss_pred eeeeeccccccccccccccCCcCEEecCCCccccccccCCCccccccCccEEEeecCcccccc
Q 003090 629 VSVFEIERVNIAKEETELFSSLEKLTLWDLPRMTDIWKGDTQFVSLHNLKKVRVEECDELRQV 691 (848)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~l~~l~~L~~L~i~~C~~L~~~ 691 (848)
-.+-+ ....+..+++|+.|++.+ .++++++... +..+++|++|++.+-+ +.++
T Consensus 379 ~~IED------aa~~f~gl~~LrkL~l~g-Nqlk~I~krA--fsgl~~LE~LdL~~Na-iaSI 431 (873)
T KOG4194|consen 379 WCIED------AAVAFNGLPSLRKLRLTG-NQLKSIPKRA--FSGLEALEHLDLGDNA-IASI 431 (873)
T ss_pred EEEec------chhhhccchhhhheeecC-ceeeecchhh--hccCcccceecCCCCc-ceee
Confidence 33311 124566789999999998 5788888764 7789999999998743 4444
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.86 E-value=1.8e-23 Score=217.22 Aligned_cols=343 Identities=21% Similarity=0.261 Sum_probs=247.6
Q ss_pred CcEEEEEeccCCchhHHHHHHHhccCCCceeeecCCCcccCCcc-cccccceeecccCcC--cccChHHHccCCceeEEE
Q 003090 209 DDVAMAVVSQTPSITKIQYEIAGWLDLTGISLMFNDIHEVPDEL-ECPKLQALFLQENSP--LAIPDRFFQGMKDLQVLD 285 (848)
Q Consensus 209 ~~~~wv~vs~~~~~~~l~~~i~~~~~l~~l~l~~n~l~~lp~~~-~~~~L~~L~l~~~~~--~~~~~~~~~~~~~Lr~L~ 285 (848)
....|..+.. ..+..++.++.....++.|++++|++..+-..+ .++.||.+.+..|.+ ..+|+++| +++.|.+||
T Consensus 32 t~~~WLkLnr-t~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lD 109 (1255)
T KOG0444|consen 32 TQMTWLKLNR-TKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTILD 109 (1255)
T ss_pred hheeEEEech-hhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhc-ccccceeee
Confidence 3467888765 677889999999999999999999998777666 889999999988854 46899987 899999999
Q ss_pred ccCcccccccccCCCCCCCCCCCCCCCCCchhhhcccCcEEEccCccccCCc-hhhccccCCCEEEccCCCCcccChhhc
Q 003090 286 LGGIRRFSFSVRFPFLFPPLPSSPLFLLPSSLSFLINLRTLRLHDRRIQGDL-SLIGELSGLEILDLSESDVSEIPVSFG 364 (848)
Q Consensus 286 l~~~~~~~~~~~~~~~~~~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~~-~~i~~l~~L~~L~l~~~~l~~lp~~i~ 364 (848)
|++ |.+.. .|..+..-+++-+|+|++|++...| +.+-+|..|-+|||++|++..+|+.+.
T Consensus 110 LSh--------------NqL~E-----vP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~R 170 (1255)
T KOG0444|consen 110 LSH--------------NQLRE-----VPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIR 170 (1255)
T ss_pred cch--------------hhhhh-----cchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHH
Confidence 999 89998 9999999999999999999988888 677899999999999999999999999
Q ss_pred cCCcccEEeccCCccccccChhhhhccccccEEeccccccccccccccccccCcccchhhhcccCCCcEEEeeccCCCCC
Q 003090 365 RLSHLRLLDLTGCYILELIPRGVLSRLRKLEELYMSHSFRHWQFESESEEDSSSNAKFIELGALSRLTSLHIHIPEGKIM 444 (848)
Q Consensus 365 ~L~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~ 444 (848)
+|.+|++|++++|.....--.. +..+++|+.|.+++.+.+.. ..|..+..+.||+.++++.|++..+
T Consensus 171 RL~~LqtL~Ls~NPL~hfQLrQ-LPsmtsL~vLhms~TqRTl~------------N~Ptsld~l~NL~dvDlS~N~Lp~v 237 (1255)
T KOG0444|consen 171 RLSMLQTLKLSNNPLNHFQLRQ-LPSMTSLSVLHMSNTQRTLD------------NIPTSLDDLHNLRDVDLSENNLPIV 237 (1255)
T ss_pred HHhhhhhhhcCCChhhHHHHhc-Cccchhhhhhhcccccchhh------------cCCCchhhhhhhhhccccccCCCcc
Confidence 9999999999998654322223 56677888888888765432 2677888999999999999999999
Q ss_pred CCCC-ccCCCCeEEEEeCCCCCCCCCcccceEEecccccccccccCccccchhhHHHHHHHHHhhcceeeeccccccccc
Q 003090 445 PSDM-SFQNLTSFSIAIGDLEERPLSDFIGLFLQKFKKRCSRAMGLSQDMRISALHSWIKNLLLRSEILALAEVNYFENI 523 (848)
Q Consensus 445 ~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~~~c~~~~~l~~~~~l~~l~~~~~~~~~~L~~L~l~~~~~~~~~ 523 (848)
|..+ .+.+|+.|+++.+.. ..|. -....| .+|+.|+++.+... .+
T Consensus 238 Pecly~l~~LrrLNLS~N~i--------teL~--------------------~~~~~W-----~~lEtLNlSrNQLt-~L 283 (1255)
T KOG0444|consen 238 PECLYKLRNLRRLNLSGNKI--------TELN--------------------MTEGEW-----ENLETLNLSRNQLT-VL 283 (1255)
T ss_pred hHHHhhhhhhheeccCcCce--------eeee--------------------ccHHHH-----hhhhhhccccchhc-cc
Confidence 9888 889999988874432 0110 011122 55666666655432 22
Q ss_pred cccccccCCCCCcEEEEecCCCceeecccccccccccCCCccEEecccccccccccccccccccCCCcceEEEecCchhh
Q 003090 524 VSDLANDGFNELMFLVIFRCNEMKYLLNSLERTLRVTLHKLEWLFIRENQNFVEICHGQLPAGCLSNVKRSDVVDCGSIL 603 (848)
Q Consensus 524 ~~~l~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~l~~L~~L~l~~c~~l~ 603 (848)
+..+ -.++.|+.|.+.++. +.. ..--+..+.+.+|+++...++ +|+-+.. ....++.|++|.+. |+.+
T Consensus 284 P~av--cKL~kL~kLy~n~Nk-L~F---eGiPSGIGKL~~Levf~aanN-~LElVPE---glcRC~kL~kL~L~-~NrL- 351 (1255)
T KOG0444|consen 284 PDAV--CKLTKLTKLYANNNK-LTF---EGIPSGIGKLIQLEVFHAANN-KLELVPE---GLCRCVKLQKLKLD-HNRL- 351 (1255)
T ss_pred hHHH--hhhHHHHHHHhccCc-ccc---cCCccchhhhhhhHHHHhhcc-ccccCch---hhhhhHHHHHhccc-ccce-
Confidence 3333 245666666665542 221 011123455666676666665 3443311 12256677777775 3555
Q ss_pred HhhhHHHHHhhccCcEEEEeccCCceeee
Q 003090 604 KILLSHLVQSFQNLQRLRVYSCGLLVSVF 632 (848)
Q Consensus 604 ~~l~~~~~~~l~~L~~L~l~~c~~l~~~~ 632 (848)
-.+|..+ ..++.|+.|++..++++.--|
T Consensus 352 iTLPeaI-HlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 352 ITLPEAI-HLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred eechhhh-hhcCCcceeeccCCcCccCCC
Confidence 5677654 666777777777777766544
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.86 E-value=1.3e-23 Score=218.34 Aligned_cols=369 Identities=21% Similarity=0.296 Sum_probs=279.6
Q ss_pred CchhHHHHHHHhccCCCceeeecCCCcccCCcc-cccccceeecccCcCcccChHHHccCCceeEEEccCcccccccccC
Q 003090 220 PSITKIQYEIAGWLDLTGISLMFNDIHEVPDEL-ECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRF 298 (848)
Q Consensus 220 ~~~~~l~~~i~~~~~l~~l~l~~n~l~~lp~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~ 298 (848)
|.-...+.++-+...++-|.|....+..+|+.+ .+.+|++|.++.|.+.++... +..++.||.+++..
T Consensus 19 Fsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGE-Ls~Lp~LRsv~~R~---------- 87 (1255)
T KOG0444|consen 19 FSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGE-LSDLPRLRSVIVRD---------- 87 (1255)
T ss_pred CCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhh-hccchhhHHHhhhc----------
Confidence 444556666666666777777777777777777 777788888887777766665 36777788887777
Q ss_pred CCCCCCCCCCCCCCCCchhhhcccCcEEEccCccccCCchhhccccCCCEEEccCCCCcccChh-hccCCcccEEeccCC
Q 003090 299 PFLFPPLPSSPLFLLPSSLSFLINLRTLRLHDRRIQGDLSLIGELSGLEILDLSESDVSEIPVS-FGRLSHLRLLDLTGC 377 (848)
Q Consensus 299 ~~~~~~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~ 377 (848)
|+++... +|..+-++..|..|+|++|.+...|..+..-+++-+|+|++|+|.++|.. +-+|+.|-.|++++|
T Consensus 88 ----N~LKnsG---iP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N 160 (1255)
T KOG0444|consen 88 ----NNLKNSG---IPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN 160 (1255)
T ss_pred ----cccccCC---CCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc
Confidence 7776554 89999999999999999999999999999999999999999999999976 568999999999996
Q ss_pred ccccccChhhhhccccccEEeccccccccccccccccccCcccchhhhcccCCCcEEEeeccC--CCCCCCCC-ccCCCC
Q 003090 378 YILELIPRGVLSRLRKLEELYMSHSFRHWQFESESEEDSSSNAKFIELGALSRLTSLHIHIPE--GKIMPSDM-SFQNLT 454 (848)
Q Consensus 378 ~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~--~~~~~~~~-~~~~L~ 454 (848)
.+..+|+. +..|.+|++|.+++|.+... ....|..+++|+.|.+++++ ...+|..+ .+.||.
T Consensus 161 -rLe~LPPQ-~RRL~~LqtL~Ls~NPL~hf-------------QLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~ 225 (1255)
T KOG0444|consen 161 -RLEMLPPQ-IRRLSMLQTLKLSNNPLNHF-------------QLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLR 225 (1255)
T ss_pred -hhhhcCHH-HHHHhhhhhhhcCCChhhHH-------------HHhcCccchhhhhhhcccccchhhcCCCchhhhhhhh
Confidence 56789999 89999999999999987654 45667777888899999887 45888888 899999
Q ss_pred eEEEEeCCCCCCCCCcccceEEecccccccccccCccccchhhHHHHHHHHHhhcceeeeccccccccccccccccCCCC
Q 003090 455 SFSIAIGDLEERPLSDFIGLFLQKFKKRCSRAMGLSQDMRISALHSWIKNLLLRSEILALAEVNYFENIVSDLANDGFNE 534 (848)
Q Consensus 455 ~L~l~~~~~~~~~~~~l~~l~l~~~~~~c~~~~~l~~~~~l~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~ 534 (848)
.++++.++. ..+|..+.. +++|..|+|+++...+-- +..+...+
T Consensus 226 dvDlS~N~L--------------------------------p~vPecly~-l~~LrrLNLS~N~iteL~---~~~~~W~~ 269 (1255)
T KOG0444|consen 226 DVDLSENNL--------------------------------PIVPECLYK-LRNLRRLNLSGNKITELN---MTEGEWEN 269 (1255)
T ss_pred hccccccCC--------------------------------CcchHHHhh-hhhhheeccCcCceeeee---ccHHHHhh
Confidence 988874433 555655555 488999999988754321 12245588
Q ss_pred CcEEEEecCCCceeecccccccccccCCCccEEecccccccccccccccc--cccCCCcceEEEecCchhhHhhhHHHHH
Q 003090 535 LMFLVIFRCNEMKYLLNSLERTLRVTLHKLEWLFIRENQNFVEICHGQLP--AGCLSNVKRSDVVDCGSILKILLSHLVQ 612 (848)
Q Consensus 535 L~~L~l~~~~~l~~l~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~--~~~l~~L~~L~l~~c~~l~~~l~~~~~~ 612 (848)
|++|+++.+. ++.++ .....+++|++|.+.++. |. ...+| .|.+..|+.+...+ +.+ +-+|..+ .
T Consensus 270 lEtLNlSrNQ-Lt~LP-----~avcKL~kL~kLy~n~Nk-L~---FeGiPSGIGKL~~Levf~aan-N~L-ElVPEgl-c 336 (1255)
T KOG0444|consen 270 LETLNLSRNQ-LTVLP-----DAVCKLTKLTKLYANNNK-LT---FEGIPSGIGKLIQLEVFHAAN-NKL-ELVPEGL-C 336 (1255)
T ss_pred hhhhccccch-hccch-----HHHhhhHHHHHHHhccCc-cc---ccCCccchhhhhhhHHHHhhc-ccc-ccCchhh-h
Confidence 9999998874 44432 234567899999888763 32 11233 34777888888877 567 8888876 8
Q ss_pred hhccCcEEEEeccCCceeeeeccccccccccccccCCcCEEecCCCccccccccCCCccccccCccEEEee
Q 003090 613 SFQNLQRLRVYSCGLLVSVFEIERVNIAKEETELFSSLEKLTLWDLPRMTDIWKGDTQFVSLHNLKKVRVE 683 (848)
Q Consensus 613 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~l~~l~~L~~L~i~ 683 (848)
.++.|+.|.+.. +.+..+| ..+..+|.|+.|+++..|+|.--|.-. ..-++|+.-+|.
T Consensus 337 RC~kL~kL~L~~-NrLiTLP---------eaIHlL~~l~vLDlreNpnLVMPPKP~---da~~~lefYNID 394 (1255)
T KOG0444|consen 337 RCVKLQKLKLDH-NRLITLP---------EAIHLLPDLKVLDLRENPNLVMPPKPN---DARKKLEFYNID 394 (1255)
T ss_pred hhHHHHHhcccc-cceeech---------hhhhhcCCcceeeccCCcCccCCCCcc---hhhhcceeeecc
Confidence 899999999985 5566666 578889999999999999997643321 122456555554
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.83 E-value=1.1e-23 Score=208.29 Aligned_cols=463 Identities=18% Similarity=0.234 Sum_probs=223.5
Q ss_pred chhHHHHHHHhccCCCceeeecCCCcccCCcc-cccccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCC
Q 003090 221 SITKIQYEIAGWLDLTGISLMFNDIHEVPDEL-ECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFP 299 (848)
Q Consensus 221 ~~~~l~~~i~~~~~l~~l~l~~n~l~~lp~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~ 299 (848)
++..+..++-....++.+.+++|.+.++|+.+ .+..++.++.+.|.+..+|+.+ .....|+.|++++
T Consensus 56 ~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i-~s~~~l~~l~~s~----------- 123 (565)
T KOG0472|consen 56 DLEVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQI-GSLISLVKLDCSS----------- 123 (565)
T ss_pred chhhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHH-hhhhhhhhhhccc-----------
Confidence 33444444444444455555555555555544 4455555555555555555543 3444555555555
Q ss_pred CCCCCCCCCCCCCCCchhhhcccCcEEEccCccccCCchhhccccCCCEEEccCCCCcccChhhccCCcccEEeccCCcc
Q 003090 300 FLFPPLPSSPLFLLPSSLSFLINLRTLRLHDRRIQGDLSLIGELSGLEILDLSESDVSEIPVSFGRLSHLRLLDLTGCYI 379 (848)
Q Consensus 300 ~~~~~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~ 379 (848)
+.+.. +|++++.+..|..|+..+|.+...|+.++.+..|..|++.+|++..+|+..-+++.|++|+...| .
T Consensus 124 ---n~~~e-----l~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N-~ 194 (565)
T KOG0472|consen 124 ---NELKE-----LPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSN-L 194 (565)
T ss_pred ---cceee-----cCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchh-h
Confidence 44444 55555555555555555555555555555555555555555555555544444555555555442 3
Q ss_pred ccccChhhhhccccccEEeccccccccccccccccccCcccchhhhcccCCCcEEEeeccCCCCCCCCC--ccCCCCeEE
Q 003090 380 LELIPRGVLSRLRKLEELYMSHSFRHWQFESESEEDSSSNAKFIELGALSRLTSLHIHIPEGKIMPSDM--SFQNLTSFS 457 (848)
Q Consensus 380 ~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~ 457 (848)
++.+|++ ++.+.+|..|++..|.+.. ..++..+..|.+|++..|.+..+|... .+.++..|+
T Consensus 195 L~tlP~~-lg~l~~L~~LyL~~Nki~~---------------lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLD 258 (565)
T KOG0472|consen 195 LETLPPE-LGGLESLELLYLRRNKIRF---------------LPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLD 258 (565)
T ss_pred hhcCChh-hcchhhhHHHHhhhccccc---------------CCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeee
Confidence 3445555 4555555555555554432 124455555555555555555554443 344444444
Q ss_pred EEeCCCCCCCCCcccceEEecccccccccccCccccchhhHHHHHHHHHhhcceeeeccccccccccccccccCCCCCcE
Q 003090 458 IAIGDLEERPLSDFIGLFLQKFKKRCSRAMGLSQDMRISALHSWIKNLLLRSEILALAEVNYFENIVSDLANDGFNELMF 537 (848)
Q Consensus 458 l~~~~~~~~~~~~l~~l~l~~~~~~c~~~~~l~~~~~l~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~ 537 (848)
+..+ +++.+|..+.- +.+|++|+++++... ..+..+ +++ +|+.
T Consensus 259 LRdN--------------------------------klke~Pde~cl-LrsL~rLDlSNN~is-~Lp~sL--gnl-hL~~ 301 (565)
T KOG0472|consen 259 LRDN--------------------------------KLKEVPDEICL-LRSLERLDLSNNDIS-SLPYSL--GNL-HLKF 301 (565)
T ss_pred cccc--------------------------------ccccCchHHHH-hhhhhhhcccCCccc-cCCccc--ccc-eeee
Confidence 4322 23555555443 467777777766533 233333 455 7777
Q ss_pred EEEecCCCcee---ecccccccccccCCCccEEeccccccccccccc-----ccc------cccCCCcceEEEecCchhh
Q 003090 538 LVIFRCNEMKY---LLNSLERTLRVTLHKLEWLFIRENQNFVEICHG-----QLP------AGCLSNVKRSDVVDCGSIL 603 (848)
Q Consensus 538 L~l~~~~~l~~---l~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~-----~~~------~~~l~~L~~L~l~~c~~l~ 603 (848)
|.+.++|--+. +... +....+..|+.= ..+..+..--.+ ..+ .....+.+.|.+++ .++
T Consensus 302 L~leGNPlrTiRr~ii~~---gT~~vLKyLrs~--~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~-~ql- 374 (565)
T KOG0472|consen 302 LALEGNPLRTIRREIISK---GTQEVLKYLRSK--IKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSD-KQL- 374 (565)
T ss_pred hhhcCCchHHHHHHHHcc---cHHHHHHHHHHh--hccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccc-ccc-
Confidence 77777763221 0000 000111111110 001111000000 001 11344567777776 456
Q ss_pred HhhhHHHHHhhc--cCcEEEEeccCCceeeeeccccccccccccccCCcCEEecCCCccccccccCCCccccccCccEEE
Q 003090 604 KILLSHLVQSFQ--NLQRLRVYSCGLLVSVFEIERVNIAKEETELFSSLEKLTLWDLPRMTDIWKGDTQFVSLHNLKKVR 681 (848)
Q Consensus 604 ~~l~~~~~~~l~--~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~l~~l~~L~~L~ 681 (848)
+.+|..++..-. -....+++.+ ++.++| ..+..+..+.+.-+..-..+ +++.. .+..+++|..|+
T Consensus 375 t~VPdEVfea~~~~~Vt~VnfskN-qL~elP---------k~L~~lkelvT~l~lsnn~i-sfv~~--~l~~l~kLt~L~ 441 (565)
T KOG0472|consen 375 TLVPDEVFEAAKSEIVTSVNFSKN-QLCELP---------KRLVELKELVTDLVLSNNKI-SFVPL--ELSQLQKLTFLD 441 (565)
T ss_pred ccCCHHHHHHhhhcceEEEecccc-hHhhhh---------hhhHHHHHHHHHHHhhcCcc-ccchH--HHHhhhcceeee
Confidence 677776544322 1334444442 344444 22223333333333332222 22222 256788899999
Q ss_pred eecCccccccccCccccccccceeeeccccccceeeeec--CCCCCCCCCCCCccEEEEecCCCCceecccchhhccccc
Q 003090 682 VEECDELRQVFPANFGKKAAAEEMVLYRKRRDQIHIHAT--TSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRL 759 (848)
Q Consensus 682 i~~C~~L~~~~p~~~~~~~~~~~l~l~~l~~~~l~i~~c--~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L 759 (848)
+++-+ +.+ +|...+... .+ +.++++.. ...|..+..+..|+.+-.++ ..+..+++ ++++++..|
T Consensus 442 L~NN~-Ln~-LP~e~~~lv--------~L--q~LnlS~NrFr~lP~~~y~lq~lEtllas~-nqi~~vd~-~~l~nm~nL 507 (565)
T KOG0472|consen 442 LSNNL-LND-LPEEMGSLV--------RL--QTLNLSFNRFRMLPECLYELQTLETLLASN-NQIGSVDP-SGLKNMRNL 507 (565)
T ss_pred cccch-hhh-cchhhhhhh--------hh--heecccccccccchHHHhhHHHHHHHHhcc-ccccccCh-HHhhhhhhc
Confidence 88732 333 454443321 12 22333221 12233333334444444443 56777755 477888889
Q ss_pred cEEEEecccccceeecCCcccccccCCCccceeccccccccccccc
Q 003090 760 ESLEVRSCPTLQEIIMDDEGEVGLQGASTKKITFPSLFGIKLCDLD 805 (848)
Q Consensus 760 ~~L~i~~C~~L~~l~~~~~~~~~l~~~~~~~~~~~sL~~L~i~~cp 805 (848)
..|++.+.. +++++. ..-.+++|++|.++|-|
T Consensus 508 ~tLDL~nNd-lq~IPp-------------~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 508 TTLDLQNND-LQQIPP-------------ILGNMTNLRHLELDGNP 539 (565)
T ss_pred ceeccCCCc-hhhCCh-------------hhccccceeEEEecCCc
Confidence 999988764 455532 22227889999988887
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.82 E-value=1.4e-22 Score=221.12 Aligned_cols=443 Identities=20% Similarity=0.203 Sum_probs=211.0
Q ss_pred HHHhccCCCceeeecCCCcccCCcc-cccccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCC
Q 003090 228 EIAGWLDLTGISLMFNDIHEVPDEL-ECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLP 306 (848)
Q Consensus 228 ~i~~~~~l~~l~l~~n~l~~lp~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~ 306 (848)
.+-+.+.+..|++++|.+..+|..+ .+.+|+.|+++.|.+..+|.+ ..++++|++|.|.+ +.+.
T Consensus 40 ~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s-~~~~~~l~~lnL~~--------------n~l~ 104 (1081)
T KOG0618|consen 40 FVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSS-CSNMRNLQYLNLKN--------------NRLQ 104 (1081)
T ss_pred HhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchh-hhhhhcchhheecc--------------chhh
Confidence 3333555666777777777777666 666677777777766666654 35667777777766 5565
Q ss_pred CCCCCCCCchhhhcccCcEEEccCccccCCchhhccccCCCEEEccCC-CCcccChhhccCCcccEEeccCCccccccCh
Q 003090 307 SSPLFLLPSSLSFLINLRTLRLHDRRIQGDLSLIGELSGLEILDLSES-DVSEIPVSFGRLSHLRLLDLTGCYILELIPR 385 (848)
Q Consensus 307 ~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~~i~~l~~L~~L~l~~~-~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~ 385 (848)
. +|.++..+++|++|++++|.+...|..+..+..+..+..++| .+..++... ++++++..+...+.++.
T Consensus 105 ~-----lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~-----ik~~~l~~n~l~~~~~~ 174 (1081)
T KOG0618|consen 105 S-----LPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTS-----IKKLDLRLNVLGGSFLI 174 (1081)
T ss_pred c-----CchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhcccc-----chhhhhhhhhcccchhc
Confidence 5 677777777777777777766666666666666666666666 232333211 55556655555555555
Q ss_pred hhhhccccccEEeccccccccccccccccccCcccchhhhcccCCCcEEEeeccCCCCCCCCCccCCCCeEEEEeCCCC-
Q 003090 386 GVLSRLRKLEELYMSHSFRHWQFESESEEDSSSNAKFIELGALSRLTSLHIHIPEGKIMPSDMSFQNLTSFSIAIGDLE- 464 (848)
Q Consensus 386 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~- 464 (848)
+ +..++. .|++.+|.+. ...+..+.+|+.|....|.+..+.- .-++|+.|....+...
T Consensus 175 ~-i~~l~~--~ldLr~N~~~----------------~~dls~~~~l~~l~c~rn~ls~l~~--~g~~l~~L~a~~n~l~~ 233 (1081)
T KOG0618|consen 175 D-IYNLTH--QLDLRYNEME----------------VLDLSNLANLEVLHCERNQLSELEI--SGPSLTALYADHNPLTT 233 (1081)
T ss_pred c-hhhhhe--eeecccchhh----------------hhhhhhccchhhhhhhhcccceEEe--cCcchheeeeccCccee
Confidence 5 455555 5667666554 1234444555555544444332211 2233444444433321
Q ss_pred CC---CCCcccceEEecccccccccccCccccchhhHHHHHHHHHhhcceeeeccccccccccccccccCCCCCcEEEEe
Q 003090 465 ER---PLSDFIGLFLQKFKKRCSRAMGLSQDMRISALHSWIKNLLLRSEILALAEVNYFENIVSDLANDGFNELMFLVIF 541 (848)
Q Consensus 465 ~~---~~~~l~~l~l~~~~~~c~~~~~l~~~~~l~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~ 541 (848)
.. .+..++.+.+. ..++..+|.|+... .+|+.+....+..+ ..+... ....+|+.|.+.
T Consensus 234 ~~~~p~p~nl~~~dis--------------~n~l~~lp~wi~~~-~nle~l~~n~N~l~-~lp~ri--~~~~~L~~l~~~ 295 (1081)
T KOG0618|consen 234 LDVHPVPLNLQYLDIS--------------HNNLSNLPEWIGAC-ANLEALNANHNRLV-ALPLRI--SRITSLVSLSAA 295 (1081)
T ss_pred eccccccccceeeecc--------------hhhhhcchHHHHhc-ccceEecccchhHH-hhHHHH--hhhhhHHHHHhh
Confidence 00 11111111111 12345566665553 56666655444432 222222 123455555555
Q ss_pred cCCCceeecccccccccccCCCccEEecccccccccccccccccccCCCcceEEEecCchhhHhhhHHHHHhhccCcEEE
Q 003090 542 RCNEMKYLLNSLERTLRVTLHKLEWLFIRENQNFVEICHGQLPAGCLSNVKRSDVVDCGSILKILLSHLVQSFQNLQRLR 621 (848)
Q Consensus 542 ~~~~l~~l~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~l~~~~~~~l~~L~~L~ 621 (848)
.|. ++.++ ...+++.+|++|++..+ +|.++....+.. .-.+|..|+.+ |.++ ..+|..-...++.|+.|.
T Consensus 296 ~ne-l~yip-----~~le~~~sL~tLdL~~N-~L~~lp~~~l~v-~~~~l~~ln~s-~n~l-~~lp~~~e~~~~~Lq~Ly 365 (1081)
T KOG0618|consen 296 YNE-LEYIP-----PFLEGLKSLRTLDLQSN-NLPSLPDNFLAV-LNASLNTLNVS-SNKL-STLPSYEENNHAALQELY 365 (1081)
T ss_pred hhh-hhhCC-----Ccccccceeeeeeehhc-cccccchHHHhh-hhHHHHHHhhh-hccc-cccccccchhhHHHHHHH
Confidence 542 33321 13334566666666555 232221100000 00112222222 1233 333333223344455555
Q ss_pred EeccCCceeeeeccccccccccccccCCcCEEecCCCccccccccCCCccccccCccEEEeecCccccccccCccccccc
Q 003090 622 VYSCGLLVSVFEIERVNIAKEETELFSSLEKLTLWDLPRMTDIWKGDTQFVSLHNLKKVRVEECDELRQVFPANFGKKAA 701 (848)
Q Consensus 622 l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~l~~l~~L~~L~i~~C~~L~~~~p~~~~~~~~ 701 (848)
+.++.--...+ ..+..+++||.|+++. ..|.++|... +..+..|+.|.+++ .+|+.+ |...+..-.
T Consensus 366 lanN~Ltd~c~---------p~l~~~~hLKVLhLsy-NrL~~fpas~--~~kle~LeeL~LSG-NkL~~L-p~tva~~~~ 431 (1081)
T KOG0618|consen 366 LANNHLTDSCF---------PVLVNFKHLKVLHLSY-NRLNSFPASK--LRKLEELEELNLSG-NKLTTL-PDTVANLGR 431 (1081)
T ss_pred HhcCcccccch---------hhhccccceeeeeecc-cccccCCHHH--HhchHHhHHHhccc-chhhhh-hHHHHhhhh
Confidence 55443322222 2344566666666664 3455555543 45556666666665 344442 222211100
Q ss_pred cceeeeccccccceeeeecCCCCCCCCCCCCccEEEEecCCCCceecccchhhccccccEEEEecccc
Q 003090 702 AEEMVLYRKRRDQIHIHATTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVRSCPT 769 (848)
Q Consensus 702 ~~~l~l~~l~~~~l~i~~c~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~ 769 (848)
.+.|...+. .. ..+| .+..+++|+.++++ |++|+.+........ +.|++|++++.+.
T Consensus 432 L~tL~ahsN--~l------~~fP-e~~~l~qL~~lDlS-~N~L~~~~l~~~~p~-p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 432 LHTLRAHSN--QL------LSFP-ELAQLPQLKVLDLS-CNNLSEVTLPEALPS-PNLKYLDLSGNTR 488 (1081)
T ss_pred hHHHhhcCC--ce------eech-hhhhcCcceEEecc-cchhhhhhhhhhCCC-cccceeeccCCcc
Confidence 011111100 00 1122 34456667777776 366655421111111 5677777776654
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.74 E-value=2.4e-19 Score=196.03 Aligned_cols=413 Identities=21% Similarity=0.247 Sum_probs=248.8
Q ss_pred eeeecCCCcccCCcc-cccccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCCCCch
Q 003090 238 ISLMFNDIHEVPDEL-ECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLPSS 316 (848)
Q Consensus 238 l~l~~n~l~~lp~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp~~ 316 (848)
++.++..++-+|..+ ....+..|++..|.....|-.+..+.-+|+.|++++ +.+.. +|..
T Consensus 3 vd~s~~~l~~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsn--------------n~~~~-----fp~~ 63 (1081)
T KOG0618|consen 3 VDASDEQLELIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSN--------------NQISS-----FPIQ 63 (1081)
T ss_pred cccccccCcccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccc--------------ccccc-----CCch
Confidence 566777888888776 445588888888887777777777777799999998 77777 8888
Q ss_pred hhhcccCcEEEccCccccCCchhhccccCCCEEEccCCCCcccChhhccCCcccEEeccCCccccccChhhhhccccccE
Q 003090 317 LSFLINLRTLRLHDRRIQGDLSLIGELSGLEILDLSESDVSEIPVSFGRLSHLRLLDLTGCYILELIPRGVLSRLRKLEE 396 (848)
Q Consensus 317 ~~~l~~L~~L~L~~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~ 396 (848)
+..+.+|+.|+++.|.+...+..++++.+|++|+|.+|.+..+|.++..+.+|+.|+++.|.+ ..+|.- +..++.+..
T Consensus 64 it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f-~~~Pl~-i~~lt~~~~ 141 (1081)
T KOG0618|consen 64 ITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHF-GPIPLV-IEVLTAEEE 141 (1081)
T ss_pred hhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhcc-CCCchh-HHhhhHHHH
Confidence 999999999999999888888888999999999999999999999999999999999998755 557776 788888888
Q ss_pred EeccccccccccccccccccCcccchhhhcccCCCcEEEeeccCCC-CCCCCC-ccCCCCeEEEEeCCCCCCCCCcccce
Q 003090 397 LYMSHSFRHWQFESESEEDSSSNAKFIELGALSRLTSLHIHIPEGK-IMPSDM-SFQNLTSFSIAIGDLEERPLSDFIGL 474 (848)
Q Consensus 397 L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~-~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~l 474 (848)
+..++|... ..++... .+++++..+.+. .++.++ .++. .|++..+..
T Consensus 142 ~~~s~N~~~-----------------~~lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~----------- 190 (1081)
T KOG0618|consen 142 LAASNNEKI-----------------QRLGQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEM----------- 190 (1081)
T ss_pred Hhhhcchhh-----------------hhhcccc-chhhhhhhhhcccchhcchhhhhe--eeecccchh-----------
Confidence 888877211 2233332 555566555432 233322 2222 233321111
Q ss_pred EEecccccccccccCccccchhhHHHHHHHHHhhcceeeeccccccccccccccccCCCCCcEEEEecCCCceeeccccc
Q 003090 475 FLQKFKKRCSRAMGLSQDMRISALHSWIKNLLLRSEILALAEVNYFENIVSDLANDGFNELMFLVIFRCNEMKYLLNSLE 554 (848)
Q Consensus 475 ~l~~~~~~c~~~~~l~~~~~l~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~l~~~~~ 554 (848)
.. .....+++|+.|....+.... +. ..-++|+.|+...|+..+..
T Consensus 191 ---------------------~~---~dls~~~~l~~l~c~rn~ls~-----l~-~~g~~l~~L~a~~n~l~~~~----- 235 (1081)
T KOG0618|consen 191 ---------------------EV---LDLSNLANLEVLHCERNQLSE-----LE-ISGPSLTALYADHNPLTTLD----- 235 (1081)
T ss_pred ---------------------hh---hhhhhccchhhhhhhhcccce-----EE-ecCcchheeeeccCcceeec-----
Confidence 00 000002233333322211110 00 12366777777777654321
Q ss_pred ccccccCCCccEEeccccc--ccccccccccccccCCCcceEEEecCchhhHhhhHHHHHhhccCcEEEEeccCCceeee
Q 003090 555 RTLRVTLHKLEWLFIRENQ--NFVEICHGQLPAGCLSNVKRSDVVDCGSILKILLSHLVQSFQNLQRLRVYSCGLLVSVF 632 (848)
Q Consensus 555 ~~~~~~~p~L~~L~l~~~~--~L~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~l~~~~~~~l~~L~~L~l~~c~~l~~~~ 632 (848)
....-.+|++++++... ++.+| .+.+++|+.|.+.+ ..+ ..+|..+ ....+|+.|.+.+| .++.++
T Consensus 236 --~~p~p~nl~~~dis~n~l~~lp~w------i~~~~nle~l~~n~-N~l-~~lp~ri-~~~~~L~~l~~~~n-el~yip 303 (1081)
T KOG0618|consen 236 --VHPVPLNLQYLDISHNNLSNLPEW------IGACANLEALNANH-NRL-VALPLRI-SRITSLVSLSAAYN-ELEYIP 303 (1081)
T ss_pred --cccccccceeeecchhhhhcchHH------HHhcccceEecccc-hhH-HhhHHHH-hhhhhHHHHHhhhh-hhhhCC
Confidence 11122466777776542 22222 23567777777766 345 5666554 55667777776665 344444
Q ss_pred eccccccccccccccCCcCEEecCCCccccccccCCCcccccc-CccEEEeecCccccccccCcccccccc-ceeeeccc
Q 003090 633 EIERVNIAKEETELFSSLEKLTLWDLPRMTDIWKGDTQFVSLH-NLKKVRVEECDELRQVFPANFGKKAAA-EEMVLYRK 710 (848)
Q Consensus 633 ~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~l~~l~-~L~~L~i~~C~~L~~~~p~~~~~~~~~-~~l~l~~l 710 (848)
.....+.+|++|++.. .+|.++|... +.-.. +|..|+++. .++.. .|..-...... +.|.+.+.
T Consensus 304 ---------~~le~~~sL~tLdL~~-N~L~~lp~~~--l~v~~~~l~~ln~s~-n~l~~-lp~~~e~~~~~Lq~LylanN 369 (1081)
T KOG0618|consen 304 ---------PFLEGLKSLRTLDLQS-NNLPSLPDNF--LAVLNASLNTLNVSS-NKLST-LPSYEENNHAALQELYLANN 369 (1081)
T ss_pred ---------Ccccccceeeeeeehh-ccccccchHH--HhhhhHHHHHHhhhh-ccccc-cccccchhhHHHHHHHHhcC
Confidence 3345677788888775 3566655532 22222 255555542 33333 23222111111 22222222
Q ss_pred cccceeeeecCCCCCCCCCCCCccEEEEecCCCCceecccchhhccccccEEEEeccccccee
Q 003090 711 RRDQIHIHATTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVRSCPTLQEI 773 (848)
Q Consensus 711 ~~~~l~i~~c~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~L~~l 773 (848)
. +. ++....+.++..|+.|++++ +.|..+| .+.+.++..|++|++++.. |+.+
T Consensus 370 --~---Lt--d~c~p~l~~~~hLKVLhLsy-NrL~~fp-as~~~kle~LeeL~LSGNk-L~~L 422 (1081)
T KOG0618|consen 370 --H---LT--DSCFPVLVNFKHLKVLHLSY-NRLNSFP-ASKLRKLEELEELNLSGNK-LTTL 422 (1081)
T ss_pred --c---cc--ccchhhhccccceeeeeecc-cccccCC-HHHHhchHHhHHHhcccch-hhhh
Confidence 0 00 12233567888999999998 7788885 4678899999999998853 4444
No 14
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.61 E-value=1.6e-17 Score=145.66 Aligned_cols=165 Identities=28% Similarity=0.421 Sum_probs=88.8
Q ss_pred ccCCcccccccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCCCCchhhhcccCcEE
Q 003090 247 EVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLPSSLSFLINLRTL 326 (848)
Q Consensus 247 ~lp~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp~~~~~l~~L~~L 326 (848)
++|..+.+.++..|-++.|.+..+|+.+ ..+++|++|++.+ ++++. +|.+++.+++||.|
T Consensus 25 ~~~gLf~~s~ITrLtLSHNKl~~vppni-a~l~nlevln~~n--------------nqie~-----lp~~issl~klr~l 84 (264)
T KOG0617|consen 25 ELPGLFNMSNITRLTLSHNKLTVVPPNI-AELKNLEVLNLSN--------------NQIEE-----LPTSISSLPKLRIL 84 (264)
T ss_pred hcccccchhhhhhhhcccCceeecCCcH-HHhhhhhhhhccc--------------chhhh-----cChhhhhchhhhhe
Confidence 3444444455555555555555555543 4555555555555 55555 55555555555555
Q ss_pred EccCccccCCchhhccccCCCEEEccCCCCc--ccChhhccCCcccEEeccCCccccccChhhhhccccccEEecccccc
Q 003090 327 RLHDRRIQGDLSLIGELSGLEILDLSESDVS--EIPVSFGRLSHLRLLDLTGCYILELIPRGVLSRLRKLEELYMSHSFR 404 (848)
Q Consensus 327 ~L~~~~~~~~~~~i~~l~~L~~L~l~~~~l~--~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~ 404 (848)
++..|+....|..++.++.|++||+.+|++. .+|..+-.+..|+.|++++|.+ ..+|++ ++++++||.|.+..|.+
T Consensus 85 nvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndf-e~lp~d-vg~lt~lqil~lrdndl 162 (264)
T KOG0617|consen 85 NVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF-EILPPD-VGKLTNLQILSLRDNDL 162 (264)
T ss_pred ecchhhhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCc-ccCChh-hhhhcceeEEeeccCch
Confidence 5555555555555555555555555555554 5555555555555555555433 445555 45555555555555544
Q ss_pred ccccccccccccCcccchhhhcccCCCcEEEeeccCCCCCCCC
Q 003090 405 HWQFESESEEDSSSNAKFIELGALSRLTSLHIHIPEGKIMPSD 447 (848)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~ 447 (848)
.. .+.+++.++.|++|++.+|.++-+|..
T Consensus 163 l~--------------lpkeig~lt~lrelhiqgnrl~vlppe 191 (264)
T KOG0617|consen 163 LS--------------LPKEIGDLTRLRELHIQGNRLTVLPPE 191 (264)
T ss_pred hh--------------CcHHHHHHHHHHHHhcccceeeecChh
Confidence 32 455555555566666665555555543
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.57 E-value=8.9e-17 Score=141.10 Aligned_cols=150 Identities=24% Similarity=0.391 Sum_probs=136.5
Q ss_pred CCceeeecCCCcccCCcc-cccccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCCC
Q 003090 235 LTGISLMFNDIHEVPDEL-ECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLL 313 (848)
Q Consensus 235 l~~l~l~~n~l~~lp~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~l 313 (848)
.+.|.+++|.++.+|+.+ .+.+|+.|++++|.+..+|.++ +.+++||.|+++- +.+.. +
T Consensus 35 ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~i-ssl~klr~lnvgm--------------nrl~~-----l 94 (264)
T KOG0617|consen 35 ITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSI-SSLPKLRILNVGM--------------NRLNI-----L 94 (264)
T ss_pred hhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhh-hhchhhhheecch--------------hhhhc-----C
Confidence 356889999999999999 9999999999999999999985 7999999999998 77777 9
Q ss_pred CchhhhcccCcEEEccCccccCC--chhhccccCCCEEEccCCCCcccChhhccCCcccEEeccCCccccccChhhhhcc
Q 003090 314 PSSLSFLINLRTLRLHDRRIQGD--LSLIGELSGLEILDLSESDVSEIPVSFGRLSHLRLLDLTGCYILELIPRGVLSRL 391 (848)
Q Consensus 314 p~~~~~l~~L~~L~L~~~~~~~~--~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~l~~l 391 (848)
|..|+.++.|++|+|.+|+.... |..+..+..|+.|.++.|.++-+|..+++|++|+.|.+++|..+ .+|++ ++.+
T Consensus 95 prgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll-~lpke-ig~l 172 (264)
T KOG0617|consen 95 PRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL-SLPKE-IGDL 172 (264)
T ss_pred ccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchh-hCcHH-HHHH
Confidence 99999999999999999977654 47888899999999999999999999999999999999997665 59999 8999
Q ss_pred ccccEEecccccccc
Q 003090 392 RKLEELYMSHSFRHW 406 (848)
Q Consensus 392 ~~L~~L~l~~~~~~~ 406 (848)
+.|++|.+.+|+++.
T Consensus 173 t~lrelhiqgnrl~v 187 (264)
T KOG0617|consen 173 TRLRELHIQGNRLTV 187 (264)
T ss_pred HHHHHHhcccceeee
Confidence 999999999998865
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.44 E-value=1.3e-13 Score=158.08 Aligned_cols=176 Identities=19% Similarity=0.271 Sum_probs=128.2
Q ss_pred CCceeeecCCCcccCCcccccccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCCCC
Q 003090 235 LTGISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLP 314 (848)
Q Consensus 235 l~~l~l~~n~l~~lp~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp 314 (848)
...++++++.++.+|..+. +.++.|++++|.+..+|..++ .+|+.|++++ |.++. +|
T Consensus 180 ~~~L~L~~~~LtsLP~~Ip-~~L~~L~Ls~N~LtsLP~~l~---~nL~~L~Ls~--------------N~Lts-----LP 236 (754)
T PRK15370 180 KTELRLKILGLTTIPACIP-EQITTLILDNNELKSLPENLQ---GNIKTLYANS--------------NQLTS-----IP 236 (754)
T ss_pred ceEEEeCCCCcCcCCcccc-cCCcEEEecCCCCCcCChhhc---cCCCEEECCC--------------Ccccc-----CC
Confidence 4678888889998887663 578999999998888988654 5889999998 77776 77
Q ss_pred chhhhcccCcEEEccCccccCCchhhccccCCCEEEccCCCCcccChhhccCCcccEEeccCCccccccChhhhhccccc
Q 003090 315 SSLSFLINLRTLRLHDRRIQGDLSLIGELSGLEILDLSESDVSEIPVSFGRLSHLRLLDLTGCYILELIPRGVLSRLRKL 394 (848)
Q Consensus 315 ~~~~~l~~L~~L~L~~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~l~~l~~L 394 (848)
..+. .+|+.|++++|.+...+..+. .+|++|++++|+++.+|..+. .+|++|++++|.+ ..+|.. +. ++|
T Consensus 237 ~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~L-t~LP~~-lp--~sL 306 (754)
T PRK15370 237 ATLP--DTIQEMELSINRITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSI-RTLPAH-LP--SGI 306 (754)
T ss_pred hhhh--ccccEEECcCCccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCcc-ccCccc-ch--hhH
Confidence 6554 478999999998776665554 478999999888888887654 4789999988755 456664 22 467
Q ss_pred cEEeccccccccccccccccccCcccchhhhcccCCCcEEEeeccCCCCCCCCCccCCCCeEEEEe
Q 003090 395 EELYMSHSFRHWQFESESEEDSSSNAKFIELGALSRLTSLHIHIPEGKIMPSDMSFQNLTSFSIAI 460 (848)
Q Consensus 395 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~ 460 (848)
+.|++++|.+... +..+ .++|+.|++++|.++.+|..+ .++|+.|++..
T Consensus 307 ~~L~Ls~N~Lt~L--------------P~~l--~~sL~~L~Ls~N~Lt~LP~~l-~~sL~~L~Ls~ 355 (754)
T PRK15370 307 THLNVQSNSLTAL--------------PETL--PPGLKTLEAGENALTSLPASL-PPELQVLDVSK 355 (754)
T ss_pred HHHHhcCCccccC--------------Cccc--cccceeccccCCccccCChhh-cCcccEEECCC
Confidence 8888888876532 1112 257888888888777766543 24566666553
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.43 E-value=1.1e-12 Score=149.33 Aligned_cols=168 Identities=20% Similarity=0.202 Sum_probs=126.8
Q ss_pred CCceeeecCCCcccCCcccccccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCCCC
Q 003090 235 LTGISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLP 314 (848)
Q Consensus 235 l~~l~l~~n~l~~lp~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp 314 (848)
-..|+++.+.++.+|..+. ++|+.|++.+|.+..+|. ..++|++|++++ |.++. +|
T Consensus 203 ~~~LdLs~~~LtsLP~~l~-~~L~~L~L~~N~Lt~LP~----lp~~Lk~LdLs~--------------N~Lts-----LP 258 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA----LPPELRTLEVSG--------------NQLTS-----LP 258 (788)
T ss_pred CcEEEcCCCCCCcCCcchh-cCCCEEEccCCcCCCCCC----CCCCCcEEEecC--------------CccCc-----cc
Confidence 4569999999999998774 479999999999999885 368999999999 88887 77
Q ss_pred chhhhcccCcEEEccCccccCCchhhccccCCCEEEccCCCCcccChhhccCCcccEEeccCCccccccChhhhhccccc
Q 003090 315 SSLSFLINLRTLRLHDRRIQGDLSLIGELSGLEILDLSESDVSEIPVSFGRLSHLRLLDLTGCYILELIPRGVLSRLRKL 394 (848)
Q Consensus 315 ~~~~~l~~L~~L~L~~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~l~~l~~L 394 (848)
.. .++|+.|++++|.+...+.. ..+|+.|++++|+++.+|.. +++|++|++++|.+. .+|.. . .+|
T Consensus 259 ~l---p~sL~~L~Ls~N~L~~Lp~l---p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~-~Lp~l-p---~~L 324 (788)
T PRK15387 259 VL---PPGLLELSIFSNPLTHLPAL---PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLA-SLPAL-P---SEL 324 (788)
T ss_pred Cc---ccccceeeccCCchhhhhhc---hhhcCEEECcCCcccccccc---ccccceeECCCCccc-cCCCC-c---ccc
Confidence 53 36889999999977655542 35788999999999998863 578999999998654 46652 2 357
Q ss_pred cEEeccccccccccccccccccCcccchhhhcccCCCcEEEeeccCCCCCCCCCccCCCCeEEEE
Q 003090 395 EELYMSHSFRHWQFESESEEDSSSNAKFIELGALSRLTSLHIHIPEGKIMPSDMSFQNLTSFSIA 459 (848)
Q Consensus 395 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~ 459 (848)
+.|++++|.+... +. + ..+|+.|++++|.++.+|.. ..+|+.|.+.
T Consensus 325 ~~L~Ls~N~L~~L--------------P~-l--p~~Lq~LdLS~N~Ls~LP~l--p~~L~~L~Ls 370 (788)
T PRK15387 325 CKLWAYNNQLTSL--------------PT-L--PSGLQELSVSDNQLASLPTL--PSELYKLWAY 370 (788)
T ss_pred cccccccCccccc--------------cc-c--ccccceEecCCCccCCCCCC--Ccccceehhh
Confidence 7888888877532 11 1 14789999999988877753 2455555544
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.40 E-value=1e-12 Score=150.70 Aligned_cols=191 Identities=18% Similarity=0.290 Sum_probs=149.9
Q ss_pred CchhHHHHHHHhccCCCceeeecCCCcccCCcccccccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCC
Q 003090 220 PSITKIQYEIAGWLDLTGISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFP 299 (848)
Q Consensus 220 ~~~~~l~~~i~~~~~l~~l~l~~n~l~~lp~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~ 299 (848)
.++..++..|.. .++.|++++|.+..+|..+. .+|++|++++|.+..+|..+. .+|+.|++++
T Consensus 188 ~~LtsLP~~Ip~--~L~~L~Ls~N~LtsLP~~l~-~nL~~L~Ls~N~LtsLP~~l~---~~L~~L~Ls~----------- 250 (754)
T PRK15370 188 LGLTTIPACIPE--QITTLILDNNELKSLPENLQ-GNIKTLYANSNQLTSIPATLP---DTIQEMELSI----------- 250 (754)
T ss_pred CCcCcCCccccc--CCcEEEecCCCCCcCChhhc-cCCCEEECCCCccccCChhhh---ccccEEECcC-----------
Confidence 566667766654 57889999999999998764 689999999999999987653 4799999999
Q ss_pred CCCCCCCCCCCCCCCchhhhcccCcEEEccCccccCCchhhccccCCCEEEccCCCCcccChhhccCCcccEEeccCCcc
Q 003090 300 FLFPPLPSSPLFLLPSSLSFLINLRTLRLHDRRIQGDLSLIGELSGLEILDLSESDVSEIPVSFGRLSHLRLLDLTGCYI 379 (848)
Q Consensus 300 ~~~~~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~ 379 (848)
|.+.. +|..+. .+|++|++++|.+...+..+. .+|++|++++|+++.+|..+. .+|++|++++|..
T Consensus 251 ---N~L~~-----LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~L 316 (754)
T PRK15370 251 ---NRITE-----LPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSL 316 (754)
T ss_pred ---CccCc-----CChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCcc
Confidence 77876 887764 589999999998877665554 589999999999999987654 4799999999765
Q ss_pred ccccChhhhhccccccEEeccccccccccccccccccCcccchhhhcccCCCcEEEeeccCCCCCCCCCccCCCCeEEEE
Q 003090 380 LELIPRGVLSRLRKLEELYMSHSFRHWQFESESEEDSSSNAKFIELGALSRLTSLHIHIPEGKIMPSDMSFQNLTSFSIA 459 (848)
Q Consensus 380 ~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~ 459 (848)
. .+|.. + .++|+.|++++|.+... +..+. ++|+.|++++|.+..+|..+ .++|+.|++.
T Consensus 317 t-~LP~~-l--~~sL~~L~Ls~N~Lt~L--------------P~~l~--~sL~~L~Ls~N~L~~LP~~l-p~~L~~LdLs 375 (754)
T PRK15370 317 T-ALPET-L--PPGLKTLEAGENALTSL--------------PASLP--PELQVLDVSKNQITVLPETL-PPTITTLDVS 375 (754)
T ss_pred c-cCCcc-c--cccceeccccCCccccC--------------Chhhc--CcccEEECCCCCCCcCChhh-cCCcCEEECC
Confidence 4 57765 2 36899999999987642 22332 68999999999998887654 3678888887
Q ss_pred eCC
Q 003090 460 IGD 462 (848)
Q Consensus 460 ~~~ 462 (848)
.+.
T Consensus 376 ~N~ 378 (754)
T PRK15370 376 RNA 378 (754)
T ss_pred CCc
Confidence 543
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.37 E-value=1.9e-12 Score=147.58 Aligned_cols=188 Identities=20% Similarity=0.187 Sum_probs=140.2
Q ss_pred EEEEEeccCCchhHHHHHHHhccCCCceeeecCCCcccCCcccccccceeecccCcCcccChHHHccCCceeEEEccCcc
Q 003090 211 VAMAVVSQTPSITKIQYEIAGWLDLTGISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIR 290 (848)
Q Consensus 211 ~~wv~vs~~~~~~~l~~~i~~~~~l~~l~l~~n~l~~lp~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~ 290 (848)
..++.++.. .+..++..+.. .++.|++++|.++.+|.. .++|++|++++|.+..+|. ..++|+.|++++
T Consensus 203 ~~~LdLs~~-~LtsLP~~l~~--~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~----lp~sL~~L~Ls~-- 271 (788)
T PRK15387 203 NAVLNVGES-GLTTLPDCLPA--HITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLPV----LPPGLLELSIFS-- 271 (788)
T ss_pred CcEEEcCCC-CCCcCCcchhc--CCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCcccC----cccccceeeccC--
Confidence 345666663 66677776664 578999999999999864 5889999999999998885 246899999999
Q ss_pred cccccccCCCCCCCCCCCCCCCCCchhhhcccCcEEEccCccccCCchhhccccCCCEEEccCCCCcccChhhccCCccc
Q 003090 291 RFSFSVRFPFLFPPLPSSPLFLLPSSLSFLINLRTLRLHDRRIQGDLSLIGELSGLEILDLSESDVSEIPVSFGRLSHLR 370 (848)
Q Consensus 291 ~~~~~~~~~~~~~~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~ 370 (848)
|.+.. +|... .+|+.|++++|++...+. .+++|++|++++|.++.+|... .+|+
T Consensus 272 ------------N~L~~-----Lp~lp---~~L~~L~Ls~N~Lt~LP~---~p~~L~~LdLS~N~L~~Lp~lp---~~L~ 325 (788)
T PRK15387 272 ------------NPLTH-----LPALP---SGLCKLWIFGNQLTSLPV---LPPGLQELSVSDNQLASLPALP---SELC 325 (788)
T ss_pred ------------Cchhh-----hhhch---hhcCEEECcCCccccccc---cccccceeECCCCccccCCCCc---cccc
Confidence 77776 66533 568899999998776654 2478999999999999888633 3577
Q ss_pred EEeccCCccccccChhhhhccccccEEeccccccccccccccccccCcccchhhhcccCCCcEEEeeccCCCCCCCCCcc
Q 003090 371 LLDLTGCYILELIPRGVLSRLRKLEELYMSHSFRHWQFESESEEDSSSNAKFIELGALSRLTSLHIHIPEGKIMPSDMSF 450 (848)
Q Consensus 371 ~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~ 450 (848)
.|++++|.. ..+|.. ..+|+.|++++|.+... +. + ..+|+.|++++|.+..+|.. .
T Consensus 326 ~L~Ls~N~L-~~LP~l----p~~Lq~LdLS~N~Ls~L--------------P~-l--p~~L~~L~Ls~N~L~~LP~l--~ 381 (788)
T PRK15387 326 KLWAYNNQL-TSLPTL----PSGLQELSVSDNQLASL--------------PT-L--PSELYKLWAYNNRLTSLPAL--P 381 (788)
T ss_pred ccccccCcc-cccccc----ccccceEecCCCccCCC--------------CC-C--CcccceehhhccccccCccc--c
Confidence 888988755 456652 25799999999988642 11 1 24678889999988877653 2
Q ss_pred CCCCeEEEE
Q 003090 451 QNLTSFSIA 459 (848)
Q Consensus 451 ~~L~~L~l~ 459 (848)
.+|+.|++.
T Consensus 382 ~~L~~LdLs 390 (788)
T PRK15387 382 SGLKELIVS 390 (788)
T ss_pred cccceEEec
Confidence 456666665
No 20
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.29 E-value=5.6e-13 Score=133.06 Aligned_cols=141 Identities=26% Similarity=0.339 Sum_probs=74.2
Q ss_pred ecCCCcccCCcccccccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCCCCchhhhc
Q 003090 241 MFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLPSSLSFL 320 (848)
Q Consensus 241 ~~n~l~~lp~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp~~~~~l 320 (848)
++-.++++|..+. +.-..+.|..|.+..+|+..|+.+++||.|||++ |.|+.. -|++|..+
T Consensus 54 r~~GL~eVP~~LP-~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~--------------N~Is~I----~p~AF~GL 114 (498)
T KOG4237|consen 54 RGKGLTEVPANLP-PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSK--------------NNISFI----APDAFKGL 114 (498)
T ss_pred cCCCcccCcccCC-CcceEEEeccCCcccCChhhccchhhhceecccc--------------cchhhc----ChHhhhhh
Confidence 3334445554442 2344555556666666666666666666666666 555554 55556666
Q ss_pred ccCcEEEccC-ccccCCc-hhhccccCCCEEEccCCCCcccC-hhhccCCcccEEeccCCccccccChhhhhccccccEE
Q 003090 321 INLRTLRLHD-RRIQGDL-SLIGELSGLEILDLSESDVSEIP-VSFGRLSHLRLLDLTGCYILELIPRGVLSRLRKLEEL 397 (848)
Q Consensus 321 ~~L~~L~L~~-~~~~~~~-~~i~~l~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L 397 (848)
..|-.|.+-+ |++...+ ..|++|..|+-|.+.-|++.-++ ..+..|++|..|.+.+|. ...++.+.+..+..++++
T Consensus 115 ~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tl 193 (498)
T KOG4237|consen 115 ASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTL 193 (498)
T ss_pred HhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchH
Confidence 5555555444 4444444 45555555666555555555333 235555555555555532 233444334555555555
Q ss_pred eccc
Q 003090 398 YMSH 401 (848)
Q Consensus 398 ~l~~ 401 (848)
.+..
T Consensus 194 hlA~ 197 (498)
T KOG4237|consen 194 HLAQ 197 (498)
T ss_pred hhhc
Confidence 4443
No 21
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.22 E-value=1.1e-11 Score=144.60 Aligned_cols=325 Identities=26% Similarity=0.296 Sum_probs=210.4
Q ss_pred CCceeeecCCCcccCCcccccccceeecccCc--CcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCC
Q 003090 235 LTGISLMFNDIHEVPDELECPKLQALFLQENS--PLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFL 312 (848)
Q Consensus 235 l~~l~l~~n~l~~lp~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 312 (848)
.+++++.+|.+..++....+++|++|-+..|. +..++..+|..++.||+|||++| ..+..
T Consensus 525 ~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~-------------~~l~~----- 586 (889)
T KOG4658|consen 525 VRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGN-------------SSLSK----- 586 (889)
T ss_pred eeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCC-------------CccCc-----
Confidence 35688899999999998888999999999995 78899999999999999999985 56666
Q ss_pred CCchhhhcccCcEEEccCccccCCchhhccccCCCEEEccCCC-CcccChhhccCCcccEEeccCCccccccChhhhhcc
Q 003090 313 LPSSLSFLINLRTLRLHDRRIQGDLSLIGELSGLEILDLSESD-VSEIPVSFGRLSHLRLLDLTGCYILELIPRGVLSRL 391 (848)
Q Consensus 313 lp~~~~~l~~L~~L~L~~~~~~~~~~~i~~l~~L~~L~l~~~~-l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~l~~l 391 (848)
+|..++.|.|||||+++++.+...|..+++|+.|.+||+..+. +..+|..+..|.+||+|.+...... .....++.+
T Consensus 587 LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~--~~~~~l~el 664 (889)
T KOG4658|consen 587 LPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALS--NDKLLLKEL 664 (889)
T ss_pred CChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccc--cchhhHHhh
Confidence 9999999999999999999999999999999999999999984 4466666777999999999874311 111114444
Q ss_pred ccccEEeccccccccccccccccccCcccchhhhcccCCCc----EEEeeccCCCCCCCCC-ccCCCCeEEEEeCCCCCC
Q 003090 392 RKLEELYMSHSFRHWQFESESEEDSSSNAKFIELGALSRLT----SLHIHIPEGKIMPSDM-SFQNLTSFSIAIGDLEER 466 (848)
Q Consensus 392 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~----~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~ 466 (848)
.+|++|..-.+..... .....+..+..|+ .+.+.++.....+... .+.+|+.|.|..+..+..
T Consensus 665 ~~Le~L~~ls~~~~s~------------~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~ 732 (889)
T KOG4658|consen 665 ENLEHLENLSITISSV------------LLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEI 732 (889)
T ss_pred hcccchhhheeecchh------------HhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchh
Confidence 4444443322221110 1233344444444 3333333333333334 788888888886554211
Q ss_pred CCCcccceEEecccccccccccCccccchhhHHHHHHHHHhhcceeeeccccccccccccccccCCCCCcEEEEecCCCc
Q 003090 467 PLSDFIGLFLQKFKKRCSRAMGLSQDMRISALHSWIKNLLLRSEILALAEVNYFENIVSDLANDGFNELMFLVIFRCNEM 546 (848)
Q Consensus 467 ~~~~l~~l~l~~~~~~c~~~~~l~~~~~l~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l 546 (848)
......... . . ..++++..+.+.+|......... ...|+|+.|.+..|..+
T Consensus 733 ~~~~~~~~~---------------------~-~----~~f~~l~~~~~~~~~~~r~l~~~---~f~~~L~~l~l~~~~~~ 783 (889)
T KOG4658|consen 733 VIEWEESLI---------------------V-L----LCFPNLSKVSILNCHMLRDLTWL---LFAPHLTSLSLVSCRLL 783 (889)
T ss_pred hcccccccc---------------------h-h----hhHHHHHHHHhhccccccccchh---hccCcccEEEEeccccc
Confidence 110000000 0 0 01455555556666555443222 23488999999998887
Q ss_pred eeeccccccc-----ccccCCCccEE-ecccccccccccccccccccCCCcceEEEecCchhhHhhhHHHHHhhccCcEE
Q 003090 547 KYLLNSLERT-----LRVTLHKLEWL-FIRENQNFVEICHGQLPAGCLSNVKRSDVVDCGSILKILLSHLVQSFQNLQRL 620 (848)
Q Consensus 547 ~~l~~~~~~~-----~~~~~p~L~~L-~l~~~~~L~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~l~~~~~~~l~~L~~L 620 (848)
+.+....... ....|++++.+ .+.+.+.+.++....++ +++|..+.+..||++ ..+|.+..+
T Consensus 784 e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~---~~~l~~~~ve~~p~l---------~~~P~~~~~ 851 (889)
T KOG4658|consen 784 EDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLS---FLKLEELIVEECPKL---------GKLPLLSTL 851 (889)
T ss_pred ccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccC---ccchhheehhcCccc---------ccCcccccc
Confidence 7653221111 12345666666 46666655555443333 555778888888777 555667777
Q ss_pred EEecc-CCceeee
Q 003090 621 RVYSC-GLLVSVF 632 (848)
Q Consensus 621 ~l~~c-~~l~~~~ 632 (848)
.+.+| ..+...|
T Consensus 852 ~i~~~~~~~~~~~ 864 (889)
T KOG4658|consen 852 TIVGCEEKLKEYP 864 (889)
T ss_pred ceeccccceeecC
Confidence 77776 5555544
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.18 E-value=1.3e-12 Score=130.54 Aligned_cols=137 Identities=24% Similarity=0.318 Sum_probs=96.0
Q ss_pred chhHHHHHHHhccCCCceeeecCCCcccCCcc--cccccceeecccCcCcccChHHHccCCceeEEEccCcccccccccC
Q 003090 221 SITKIQYEIAGWLDLTGISLMFNDIHEVPDEL--ECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRF 298 (848)
Q Consensus 221 ~~~~l~~~i~~~~~l~~l~l~~n~l~~lp~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~ 298 (848)
.+.+|+.++.... ..+.|..|.|+.+|+.. .+++||.|+|+.|.+..|.+..|++++.|-.|-+.++
T Consensus 57 GL~eVP~~LP~~t--veirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~--------- 125 (498)
T KOG4237|consen 57 GLTEVPANLPPET--VEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGN--------- 125 (498)
T ss_pred CcccCcccCCCcc--eEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcC---------
Confidence 3444444444333 45778888888888876 7888888888888888888888888888777766653
Q ss_pred CCCCCCCCCCCCCCCCc-hhhhcccCcEEEccCccccCCc-hhhccccCCCEEEccCCCCcccCh-hhccCCcccEEecc
Q 003090 299 PFLFPPLPSSPLFLLPS-SLSFLINLRTLRLHDRRIQGDL-SLIGELSGLEILDLSESDVSEIPV-SFGRLSHLRLLDLT 375 (848)
Q Consensus 299 ~~~~~~l~~~~~~~lp~-~~~~l~~L~~L~L~~~~~~~~~-~~i~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~ 375 (848)
|.|+. +|. .|+.|..|+.|.+.-|.+.-.. ..+..+++|..|.+..|.+..++. .+..+..++++.+.
T Consensus 126 ----NkI~~-----l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA 196 (498)
T KOG4237|consen 126 ----NKITD-----LPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLA 196 (498)
T ss_pred ----Cchhh-----hhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhh
Confidence 66666 553 4677777777777777666555 667777777777777777776665 56666666666655
Q ss_pred CC
Q 003090 376 GC 377 (848)
Q Consensus 376 ~~ 377 (848)
.|
T Consensus 197 ~n 198 (498)
T KOG4237|consen 197 QN 198 (498)
T ss_pred cC
Confidence 43
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.16 E-value=6.1e-11 Score=126.67 Aligned_cols=89 Identities=21% Similarity=0.227 Sum_probs=39.2
Q ss_pred hhhhcccCcEEEccCccccCCc-hhhccccC---CCEEEccCCCCc-----ccChhhccC-CcccEEeccCCccccc---
Q 003090 316 SLSFLINLRTLRLHDRRIQGDL-SLIGELSG---LEILDLSESDVS-----EIPVSFGRL-SHLRLLDLTGCYILEL--- 382 (848)
Q Consensus 316 ~~~~l~~L~~L~L~~~~~~~~~-~~i~~l~~---L~~L~l~~~~l~-----~lp~~i~~L-~~L~~L~l~~~~~~~~--- 382 (848)
.+..+++|++|++++|.+.... ..+..+.+ |++|++++|.+. .+...+..+ ++|+.|++++|.....
T Consensus 76 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 155 (319)
T cd00116 76 GLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCE 155 (319)
T ss_pred HHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHH
Confidence 3444445555555555443222 22322222 555555555444 122233444 5555555555544311
Q ss_pred -cChhhhhccccccEEeccccccc
Q 003090 383 -IPRGVLSRLRKLEELYMSHSFRH 405 (848)
Q Consensus 383 -~p~~~l~~l~~L~~L~l~~~~~~ 405 (848)
++.. +..+++|++|++++|.+.
T Consensus 156 ~~~~~-~~~~~~L~~L~l~~n~l~ 178 (319)
T cd00116 156 ALAKA-LRANRDLKELNLANNGIG 178 (319)
T ss_pred HHHHH-HHhCCCcCEEECcCCCCc
Confidence 1222 344445555555555443
No 24
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.14 E-value=1.2e-12 Score=131.93 Aligned_cols=268 Identities=16% Similarity=0.150 Sum_probs=172.0
Q ss_pred HHHHHhhcceeeeccccccccccccccccCCCCCcEEEEecCCCceeecccccccccccCCCccEEeccccccccccccc
Q 003090 502 IKNLLLRSEILALAEVNYFENIVSDLANDGFNELMFLVIFRCNEMKYLLNSLERTLRVTLHKLEWLFIRENQNFVEICHG 581 (848)
Q Consensus 502 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~ 581 (848)
+....++|++|.+..|..+++..-......+++|++|++++|+.++.- + --....+...|+++.+.+|..++.=...
T Consensus 185 la~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~--g-v~~~~rG~~~l~~~~~kGC~e~~le~l~ 261 (483)
T KOG4341|consen 185 LARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGN--G-VQALQRGCKELEKLSLKGCLELELEALL 261 (483)
T ss_pred HHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcC--c-chHHhccchhhhhhhhcccccccHHHHH
Confidence 344467788888888877776544433457888888888888877641 0 0113345566777777777655421111
Q ss_pred ccccccCCCcceEEEecCchhhHhhh-HHHHHhhccCcEEEEeccCCceeeeeccccccccccccccCCcCEEecCCCcc
Q 003090 582 QLPAGCLSNVKRSDVVDCGSILKILL-SHLVQSFQNLQRLRVYSCGLLVSVFEIERVNIAKEETELFSSLEKLTLWDLPR 660 (848)
Q Consensus 582 ~~~~~~l~~L~~L~l~~c~~l~~~l~-~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~ 660 (848)
.-.+..+-+.++++..|..+ ++.. ..+...+..|+.|..++|.++...+-. .-..+.++|+.|.+.+|..
T Consensus 262 -~~~~~~~~i~~lnl~~c~~l-TD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~-------aLg~~~~~L~~l~l~~c~~ 332 (483)
T KOG4341|consen 262 -KAAAYCLEILKLNLQHCNQL-TDEDLWLIACGCHALQVLCYSSCTDITDEVLW-------ALGQHCHNLQVLELSGCQQ 332 (483)
T ss_pred -HHhccChHhhccchhhhccc-cchHHHHHhhhhhHhhhhcccCCCCCchHHHH-------HHhcCCCceEEEeccccch
Confidence 11224666777777788777 4433 223456788888888888876654321 1123558888888888887
Q ss_pred ccccccCCCccccccCccEEEeecCccccccccCccccccccceeeeccccccceeeeecCCCCCCCCCCCCccEEEEec
Q 003090 661 MTDIWKGDTQFVSLHNLKKVRVEECDELRQVFPANFGKKAAAEEMVLYRKRRDQIHIHATTSTSSPTPSLGNLVSITIRG 740 (848)
Q Consensus 661 L~~l~~~~~~l~~l~~L~~L~i~~C~~L~~~~p~~~~~~~~~~~l~l~~l~~~~l~i~~c~~~~~~~~~l~~L~~L~i~~ 740 (848)
+........ -.+++.|+.+++.+|...++. .+...-.+++.|+.|.+++
T Consensus 333 fsd~~ft~l-~rn~~~Le~l~~e~~~~~~d~------------------------------tL~sls~~C~~lr~lslsh 381 (483)
T KOG4341|consen 333 FSDRGFTML-GRNCPHLERLDLEECGLITDG------------------------------TLASLSRNCPRLRVLSLSH 381 (483)
T ss_pred hhhhhhhhh-hcCChhhhhhcccccceehhh------------------------------hHhhhccCCchhccCChhh
Confidence 766533321 156788888888888665542 0112235789999999999
Q ss_pred CCCCceecc---cchhhccccccEEEEecccccceeecCCcccccccCCCccceeccccccccccccccccccc--CCCc
Q 003090 741 CGKLRNLFT---TSMVKSLVRLESLEVRSCPTLQEIIMDDEGEVGLQGASTKKITFPSLFGIKLCDLDSLACFC--STAH 815 (848)
Q Consensus 741 C~~L~~l~~---~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~~l~~~~~~~~~~~sL~~L~i~~cp~L~~~~--~~~~ 815 (848)
|..+++... .+...++..|+.|++.+||.+.+- .+.++ ...++|+++++.+|...++-. .-..
T Consensus 382 ce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~--------~Le~l----~~c~~Leri~l~~~q~vtk~~i~~~~~ 449 (483)
T KOG4341|consen 382 CELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDA--------TLEHL----SICRNLERIELIDCQDVTKEAISRFAT 449 (483)
T ss_pred hhhhhhhhhhhhhhccccccccceeeecCCCCchHH--------HHHHH----hhCcccceeeeechhhhhhhhhHHHHh
Confidence 998877521 123455677999999999988553 22221 126899999999999887732 3345
Q ss_pred ccccccccc
Q 003090 816 HFNFVFHLG 824 (848)
Q Consensus 816 ~~~~~~i~~ 824 (848)
|.|.+++..
T Consensus 450 ~lp~i~v~a 458 (483)
T KOG4341|consen 450 HLPNIKVHA 458 (483)
T ss_pred hCccceehh
Confidence 666666554
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.07 E-value=1.2e-11 Score=129.41 Aligned_cols=175 Identities=26% Similarity=0.365 Sum_probs=138.9
Q ss_pred CceeeecCCCcccCCcc-cccccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCCCC
Q 003090 236 TGISLMFNDIHEVPDEL-ECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLP 314 (848)
Q Consensus 236 ~~l~l~~n~l~~lp~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp 314 (848)
...+++.|++..+|... .+..|..+.+..|.+..+|..+ .++..|.+++|+. |+++. +|
T Consensus 78 ~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i-~~L~~lt~l~ls~--------------NqlS~-----lp 137 (722)
T KOG0532|consen 78 VFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAI-CNLEALTFLDLSS--------------NQLSH-----LP 137 (722)
T ss_pred hhhhccccccccCchHHHHHHHHHHHHHHhccceecchhh-hhhhHHHHhhhcc--------------chhhc-----CC
Confidence 34678888888888877 7777888888888888888775 5788888888888 77777 88
Q ss_pred chhhhcccCcEEEccCccccCCchhhccccCCCEEEccCCCCcccChhhccCCcccEEeccCCccccccChhhhhccccc
Q 003090 315 SSLSFLINLRTLRLHDRRIQGDLSLIGELSGLEILDLSESDVSEIPVSFGRLSHLRLLDLTGCYILELIPRGVLSRLRKL 394 (848)
Q Consensus 315 ~~~~~l~~L~~L~L~~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~l~~l~~L 394 (848)
..++.|+ |+.|-+++|++...+..|+.+..|..||.+.|.+..+|..++.+.+|+.|+++.|.. ..+|++ +..| .|
T Consensus 138 ~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l-~~lp~E-l~~L-pL 213 (722)
T KOG0532|consen 138 DGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHL-EDLPEE-LCSL-PL 213 (722)
T ss_pred hhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhh-hhCCHH-HhCC-ce
Confidence 8887777 888888888888788888888888888888888888888888888888888888644 557777 5644 47
Q ss_pred cEEeccccccccccccccccccCcccchhhhcccCCCcEEEeeccCCCCCCCCC
Q 003090 395 EELYMSHSFRHWQFESESEEDSSSNAKFIELGALSRLTSLHIHIPEGKIMPSDM 448 (848)
Q Consensus 395 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~ 448 (848)
..||++.|++.. +|..+.+|++|++|-|.+|.+..-|..+
T Consensus 214 i~lDfScNkis~--------------iPv~fr~m~~Lq~l~LenNPLqSPPAqI 253 (722)
T KOG0532|consen 214 IRLDFSCNKISY--------------LPVDFRKMRHLQVLQLENNPLQSPPAQI 253 (722)
T ss_pred eeeecccCceee--------------cchhhhhhhhheeeeeccCCCCCChHHH
Confidence 788888887764 5777888888888888888888777766
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.05 E-value=1.4e-11 Score=128.87 Aligned_cols=160 Identities=24% Similarity=0.362 Sum_probs=103.7
Q ss_pred hHHHHHHHhccCCCceeeecCCCcccCCcc-cccccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCC
Q 003090 223 TKIQYEIAGWLDLTGISLMFNDIHEVPDEL-ECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFL 301 (848)
Q Consensus 223 ~~l~~~i~~~~~l~~l~l~~n~l~~lp~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~ 301 (848)
..++.++-....+..+.+..|.+..+|..+ .+..|.+|+++.|.+..+|..++ .--|++|-+++
T Consensus 88 ~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC--~lpLkvli~sN------------- 152 (722)
T KOG0532|consen 88 SELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLC--DLPLKVLIVSN------------- 152 (722)
T ss_pred ccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhh--cCcceeEEEec-------------
Confidence 344455555555566666667666666666 66667777777776666666653 22366676666
Q ss_pred CCCCCCCCCCCCCchhhhcccCcEEEccCccccCCchhhccccCCCEEEccCCCCcccChhhccCCcccEEeccCCcccc
Q 003090 302 FPPLPSSPLFLLPSSLSFLINLRTLRLHDRRIQGDLSLIGELSGLEILDLSESDVSEIPVSFGRLSHLRLLDLTGCYILE 381 (848)
Q Consensus 302 ~~~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~ 381 (848)
|++.. +|..++.+.+|..|+.+.|.+...++.++.+..|+.|++..|++..+|..+..| .|..||++.|+ +.
T Consensus 153 -Nkl~~-----lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScNk-is 224 (722)
T KOG0532|consen 153 -NKLTS-----LPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCNK-IS 224 (722)
T ss_pred -Ccccc-----CCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccCc-ee
Confidence 66666 666677666677777777766666666777777777777777777777666643 36667776643 34
Q ss_pred ccChhhhhccccccEEecccccccc
Q 003090 382 LIPRGVLSRLRKLEELYMSHSFRHW 406 (848)
Q Consensus 382 ~~p~~~l~~l~~L~~L~l~~~~~~~ 406 (848)
.+|.. |.+|+.|++|-|.+|.+..
T Consensus 225 ~iPv~-fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 225 YLPVD-FRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred ecchh-hhhhhhheeeeeccCCCCC
Confidence 56666 6777777777776666654
No 27
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.02 E-value=4.1e-12 Score=128.17 Aligned_cols=251 Identities=15% Similarity=0.157 Sum_probs=133.2
Q ss_pred hcceeeeccccccccccccccccCCCCCcEEEEecCCCceeecccccccccccCCCccEEeccccccccccccccccccc
Q 003090 508 RSEILALAEVNYFENIVSDLANDGFNELMFLVIFRCNEMKYLLNSLERTLRVTLHKLEWLFIRENQNFVEICHGQLPAGC 587 (848)
Q Consensus 508 ~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~ 587 (848)
.|+.|.+.+|..+..-........+|+++.|.+.+|.++++ .........+++|+.|.+..|.++++.....+.. .
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd---~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~-g 214 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITD---SSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAE-G 214 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccH---HHHHHHHHhcchhhhhhhcccchhHHHHHHHHHH-h
Confidence 35555555555544433333334456666666666654432 1112233345666666666665555432111111 3
Q ss_pred CCCcceEEEecCchhhHh-hhHHHHHhhccCcEEEEeccCCc--------------------------eeeeeccccccc
Q 003090 588 LSNVKRSDVVDCGSILKI-LLSHLVQSFQNLQRLRVYSCGLL--------------------------VSVFEIERVNIA 640 (848)
Q Consensus 588 l~~L~~L~l~~c~~l~~~-l~~~~~~~l~~L~~L~l~~c~~l--------------------------~~~~~~~~~~~~ 640 (848)
+|+|++|++++|+.+ .. --......+..++.+...+|..+ ++....
T Consensus 215 C~kL~~lNlSwc~qi-~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~------ 287 (483)
T KOG4341|consen 215 CRKLKYLNLSWCPQI-SGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLW------ 287 (483)
T ss_pred hhhHHHhhhccCchh-hcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHH------
Confidence 566666666666555 22 11111233444555544455433 322100
Q ss_pred cccccccCCcCEEecCCCccccccccCCCccccccCccEEEeecCccccccccCccccccccceeeeccccccceeeeec
Q 003090 641 KEETELFSSLEKLTLWDLPRMTDIWKGDTQFVSLHNLKKVRVEECDELRQVFPANFGKKAAAEEMVLYRKRRDQIHIHAT 720 (848)
Q Consensus 641 ~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~l~~l~~L~~L~i~~C~~L~~~~p~~~~~~~~~~~l~l~~l~~~~l~i~~c 720 (848)
..-..+..|+.|..++|..+....-... ..++++|+.|.+.+|..+++.
T Consensus 288 -~i~~~c~~lq~l~~s~~t~~~d~~l~aL-g~~~~~L~~l~l~~c~~fsd~----------------------------- 336 (483)
T KOG4341|consen 288 -LIACGCHALQVLCYSSCTDITDEVLWAL-GQHCHNLQVLELSGCQQFSDR----------------------------- 336 (483)
T ss_pred -HHhhhhhHhhhhcccCCCCCchHHHHHH-hcCCCceEEEeccccchhhhh-----------------------------
Confidence 0111234555555555555443221111 134556666666666555442
Q ss_pred CCCCCCCCCCCCccEEEEecCCCCceecccchhhccccccEEEEecccccceeecCCcccccccCCCccceecccccccc
Q 003090 721 TSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVRSCPTLQEIIMDDEGEVGLQGASTKKITFPSLFGIK 800 (848)
Q Consensus 721 ~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~~l~~~~~~~~~~~sL~~L~ 800 (848)
.+.....+.+.|+.+++.+|..+.+-.-.....+++.|++|.++.|..+.+- ++.++.........|+.+.
T Consensus 337 -~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~--------gi~~l~~~~c~~~~l~~lE 407 (483)
T KOG4341|consen 337 -GFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDE--------GIRHLSSSSCSLEGLEVLE 407 (483)
T ss_pred -hhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhh--------hhhhhhhccccccccceee
Confidence 1112235778899999999987765533345678899999999999877543 4444444444467899999
Q ss_pred ccccccccc
Q 003090 801 LCDLDSLAC 809 (848)
Q Consensus 801 i~~cp~L~~ 809 (848)
+.+||.+++
T Consensus 408 L~n~p~i~d 416 (483)
T KOG4341|consen 408 LDNCPLITD 416 (483)
T ss_pred ecCCCCchH
Confidence 999998887
No 28
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.96 E-value=4.4e-10 Score=120.04 Aligned_cols=15 Identities=27% Similarity=0.441 Sum_probs=6.7
Q ss_pred hccCCcccEEeccCC
Q 003090 363 FGRLSHLRLLDLTGC 377 (848)
Q Consensus 363 i~~L~~L~~L~l~~~ 377 (848)
+..+++|++|++++|
T Consensus 217 ~~~~~~L~~L~ls~n 231 (319)
T cd00116 217 LASLKSLEVLNLGDN 231 (319)
T ss_pred hcccCCCCEEecCCC
Confidence 333444444444444
No 29
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.90 E-value=2.9e-09 Score=111.56 Aligned_cols=75 Identities=29% Similarity=0.524 Sum_probs=67.6
Q ss_pred hhHHHHHHHHHHhc--CCccEEEEEeCCCCchhHHHHHHHHHHhhccccCcEEEEEeccCCchhHHHHHHHhccCCC
Q 003090 162 RESTMKDIMEAMKD--ENVSITGICGMGGVGKTTLVKEIQKQAKEMKMFDDVAMAVVSQTPSITKIQYEIAGWLDLT 236 (848)
Q Consensus 162 ~~~~~~~i~~~L~~--~~~~vi~i~G~gG~GKTtla~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~~~l~ 236 (848)
||.++++|.++|.+ .+..+|+|+||||+||||||+.++++..++.+|+.++|+.++...+...+...|...+...
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~ 77 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEP 77 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccccccccccccccccc
Confidence 68899999999997 8899999999999999999999999888899999999999999999999999998877654
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.86 E-value=3.3e-09 Score=99.04 Aligned_cols=137 Identities=28% Similarity=0.319 Sum_probs=33.3
Q ss_pred ecCCCcccCCcccccccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCCCCchhhhc
Q 003090 241 MFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLPSSLSFL 320 (848)
Q Consensus 241 ~~n~l~~lp~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp~~~~~l 320 (848)
..+.+...|...+..++++|+|.+|.+..+.. +-..+.+|++|++++ |.++. ++ .+..+
T Consensus 5 t~~~i~~~~~~~n~~~~~~L~L~~n~I~~Ie~-L~~~l~~L~~L~Ls~--------------N~I~~-----l~-~l~~L 63 (175)
T PF14580_consen 5 TANMIEQIAQYNNPVKLRELNLRGNQISTIEN-LGATLDKLEVLDLSN--------------NQITK-----LE-GLPGL 63 (175)
T ss_dssp -------------------------------S---TT-TT--EEE-TT--------------S--S-------T-T----
T ss_pred cccccccccccccccccccccccccccccccc-hhhhhcCCCEEECCC--------------CCCcc-----cc-CccCh
Confidence 34445555555555566666666666655543 112455666666666 55555 32 35556
Q ss_pred ccCcEEEccCccccCCchhh-ccccCCCEEEccCCCCcccC--hhhccCCcccEEeccCCccccc--cChhhhhcccccc
Q 003090 321 INLRTLRLHDRRIQGDLSLI-GELSGLEILDLSESDVSEIP--VSFGRLSHLRLLDLTGCYILEL--IPRGVLSRLRKLE 395 (848)
Q Consensus 321 ~~L~~L~L~~~~~~~~~~~i-~~l~~L~~L~l~~~~l~~lp--~~i~~L~~L~~L~l~~~~~~~~--~p~~~l~~l~~L~ 395 (848)
++|++|++++|++....+.+ ..+++|++|++++|+|..+. ..+..+++|++|++.+|..... .-..++..+++|+
T Consensus 64 ~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk 143 (175)
T PF14580_consen 64 PRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLK 143 (175)
T ss_dssp TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-S
T ss_pred hhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhh
Confidence 66666666666555443333 24566666666666555332 2344555555555555543321 1112244555555
Q ss_pred EEe
Q 003090 396 ELY 398 (848)
Q Consensus 396 ~L~ 398 (848)
.||
T Consensus 144 ~LD 146 (175)
T PF14580_consen 144 VLD 146 (175)
T ss_dssp EET
T ss_pred eeC
Confidence 554
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.81 E-value=6.2e-09 Score=97.17 Aligned_cols=123 Identities=27% Similarity=0.347 Sum_probs=58.0
Q ss_pred cCCCceeeecCCCcccCCcc-cccccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCC
Q 003090 233 LDLTGISLMFNDIHEVPDEL-ECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLF 311 (848)
Q Consensus 233 ~~l~~l~l~~n~l~~lp~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~ 311 (848)
..++.|+|++|.|+.+...- .+.+|+.|++++|.+..++. +..+++|+.|++++ |.++.
T Consensus 19 ~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~--------------N~I~~---- 78 (175)
T PF14580_consen 19 VKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSN--------------NRISS---- 78 (175)
T ss_dssp -----------------S--TT-TT--EEE-TTS--S--TT------TT--EEE--S--------------S---S----
T ss_pred cccccccccccccccccchhhhhcCCCEEECCCCCCccccC--ccChhhhhhcccCC--------------CCCCc----
Confidence 34688999999999886544 57899999999999999875 67899999999999 88988
Q ss_pred CCCchh-hhcccCcEEEccCccccCC--chhhccccCCCEEEccCCCCcccCh----hhccCCcccEEeccC
Q 003090 312 LLPSSL-SFLINLRTLRLHDRRIQGD--LSLIGELSGLEILDLSESDVSEIPV----SFGRLSHLRLLDLTG 376 (848)
Q Consensus 312 ~lp~~~-~~l~~L~~L~L~~~~~~~~--~~~i~~l~~L~~L~l~~~~l~~lp~----~i~~L~~L~~L~l~~ 376 (848)
++..+ ..+++|+.|++++|++... ...+..+++|++|++.+|.+...+. .+..+++|+.||-..
T Consensus 79 -i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 79 -ISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp --CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred -cccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 76655 4699999999999987654 3788899999999999999886553 478899999998654
No 32
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.74 E-value=1.3e-08 Score=101.15 Aligned_cols=257 Identities=19% Similarity=0.196 Sum_probs=170.1
Q ss_pred hhHHHHHHHHHHhcCCccEEEEEeCCCCchhHHHHHHHHHHhhccccCcEEEEEeccCCchhHHH-------HHHHhccC
Q 003090 162 RESTMKDIMEAMKDENVSITGICGMGGVGKTTLVKEIQKQAKEMKMFDDVAMAVVSQTPSITKIQ-------YEIAGWLD 234 (848)
Q Consensus 162 ~~~~~~~i~~~L~~~~~~vi~i~G~gG~GKTtla~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~-------~~i~~~~~ 234 (848)
-+++.+.+.+.+...+ ++..|.=-|..==|.-|+.+.+...-.+.+..+-|...--.-....++ +.+..+-.
T Consensus 15 t~ed~~~v~~~~~~~~-s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~ 93 (382)
T KOG1909|consen 15 TEEDEKDVEEELEPMD-SLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPK 93 (382)
T ss_pred hHhhhhhHHHHhcccC-ceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCc
Confidence 3455566666665444 334443333222255677777766655666666665433322333333 34444446
Q ss_pred CCceeeecCCCc--cc---CCcc-cccccceeecccCcCcccChHH-------------HccCCceeEEEccCccccccc
Q 003090 235 LTGISLMFNDIH--EV---PDEL-ECPKLQALFLQENSPLAIPDRF-------------FQGMKDLQVLDLGGIRRFSFS 295 (848)
Q Consensus 235 l~~l~l~~n~l~--~l---p~~~-~~~~L~~L~l~~~~~~~~~~~~-------------~~~~~~Lr~L~l~~~~~~~~~ 295 (848)
++.++||+|-|. .+ ...+ ++..|++|.|++|-++...... ...-+.||++...+
T Consensus 94 L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r------- 166 (382)
T KOG1909|consen 94 LQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR------- 166 (382)
T ss_pred eeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec-------
Confidence 889999999887 22 2223 7899999999999776543322 23456799999999
Q ss_pred ccCCCCCCCCCCCCCCCCCchhhhcccCcEEEccCccccCCc-----hhhccccCCCEEEccCCCCc-----ccChhhcc
Q 003090 296 VRFPFLFPPLPSSPLFLLPSSLSFLINLRTLRLHDRRIQGDL-----SLIGELSGLEILDLSESDVS-----EIPVSFGR 365 (848)
Q Consensus 296 ~~~~~~~~~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~~-----~~i~~l~~L~~L~l~~~~l~-----~lp~~i~~ 365 (848)
|.+.......+...+...+.|+.+.+..|.+...- ..+..+++|++||+..|.++ .+...+..
T Consensus 167 -------Nrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s 239 (382)
T KOG1909|consen 167 -------NRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSS 239 (382)
T ss_pred -------cccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcc
Confidence 66655322224456778889999999999765431 67889999999999999776 44556777
Q ss_pred CCcccEEeccCCccccc----cChhhhhccccccEEeccccccccccccccccccCcccchhhhcccCCCcEEEeeccCC
Q 003090 366 LSHLRLLDLTGCYILEL----IPRGVLSRLRKLEELYMSHSFRHWQFESESEEDSSSNAKFIELGALSRLTSLHIHIPEG 441 (848)
Q Consensus 366 L~~L~~L~l~~~~~~~~----~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~ 441 (848)
+++|+.|++++|..... +-..+-...++|+.|.+.+|.++.. ...+....+...+.|+.|++++|.+
T Consensus 240 ~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~d---------a~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 240 WPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRD---------AALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHH---------HHHHHHHHHhcchhhHHhcCCcccc
Confidence 88999999999865432 2222234578999999999988653 2233455666789999999999987
Q ss_pred C
Q 003090 442 K 442 (848)
Q Consensus 442 ~ 442 (848)
.
T Consensus 311 ~ 311 (382)
T KOG1909|consen 311 G 311 (382)
T ss_pred c
Confidence 4
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.70 E-value=2.5e-09 Score=103.31 Aligned_cols=134 Identities=25% Similarity=0.281 Sum_probs=101.6
Q ss_pred CCceeEEEccCcccccccccCCCCCCCCCCCCCCCCCchhhhcccCcEEEccCccccCCchhhccccCCCEEEccCCCCc
Q 003090 278 MKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLPSSLSFLINLRTLRLHDRRIQGDLSLIGELSGLEILDLSESDVS 357 (848)
Q Consensus 278 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~~i~~l~~L~~L~l~~~~l~ 357 (848)
-+.|..+||++ |.++. +..++.-++.+|.|++++|++.. ...+..+++|+.||+++|.++
T Consensus 283 Wq~LtelDLS~--------------N~I~~-----iDESvKL~Pkir~L~lS~N~i~~-v~nLa~L~~L~~LDLS~N~Ls 342 (490)
T KOG1259|consen 283 WQELTELDLSG--------------NLITQ-----IDESVKLAPKLRRLILSQNRIRT-VQNLAELPQLQLLDLSGNLLA 342 (490)
T ss_pred Hhhhhhccccc--------------cchhh-----hhhhhhhccceeEEeccccceee-ehhhhhcccceEeecccchhH
Confidence 45677888888 77777 77778888888888888885543 344888888888888888888
Q ss_pred ccChhhccCCcccEEeccCCccccccChhhhhccccccEEeccccccccccccccccccCcccchhhhcccCCCcEEEee
Q 003090 358 EIPVSFGRLSHLRLLDLTGCYILELIPRGVLSRLRKLEELYMSHSFRHWQFESESEEDSSSNAKFIELGALSRLTSLHIH 437 (848)
Q Consensus 358 ~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~ 437 (848)
++-..-.+|-+.++|.+++|. ...+.. +++|.+|..|++++|++... .....+++++.|++|.+.
T Consensus 343 ~~~Gwh~KLGNIKtL~La~N~-iE~LSG--L~KLYSLvnLDl~~N~Ie~l------------deV~~IG~LPCLE~l~L~ 407 (490)
T KOG1259|consen 343 ECVGWHLKLGNIKTLKLAQNK-IETLSG--LRKLYSLVNLDLSSNQIEEL------------DEVNHIGNLPCLETLRLT 407 (490)
T ss_pred hhhhhHhhhcCEeeeehhhhh-Hhhhhh--hHhhhhheeccccccchhhH------------HHhcccccccHHHHHhhc
Confidence 776666678888888888864 344543 78888888888888887654 234668888888888888
Q ss_pred ccCCCCCCC
Q 003090 438 IPEGKIMPS 446 (848)
Q Consensus 438 ~~~~~~~~~ 446 (848)
+|.+..++.
T Consensus 408 ~NPl~~~vd 416 (490)
T KOG1259|consen 408 GNPLAGSVD 416 (490)
T ss_pred CCCccccch
Confidence 887765553
No 34
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=7.9e-09 Score=105.41 Aligned_cols=207 Identities=18% Similarity=0.137 Sum_probs=137.7
Q ss_pred cCCCceeeecCCCcccCC--cc-cccccceeecccCcCcccC--hHHHccCCceeEEEccCcccccccccCCCCCCCCCC
Q 003090 233 LDLTGISLMFNDIHEVPD--EL-ECPKLQALFLQENSPLAIP--DRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPS 307 (848)
Q Consensus 233 ~~l~~l~l~~n~l~~lp~--~~-~~~~L~~L~l~~~~~~~~~--~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~ 307 (848)
..|+.+.|.+......+. .. .|++++.|+|+.|.+..+. ..+...+++|+.|+++.| .+..
T Consensus 121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~N--------------rl~~ 186 (505)
T KOG3207|consen 121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSN--------------RLSN 186 (505)
T ss_pred HhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccc--------------cccC
Confidence 345677777777776663 23 7899999999999654432 345678999999999994 3332
Q ss_pred CCCCCCCchhhhcccCcEEEccCccccCCc--hhhccccCCCEEEccCCC-CcccChhhccCCcccEEeccCCccccccC
Q 003090 308 SPLFLLPSSLSFLINLRTLRLHDRRIQGDL--SLIGELSGLEILDLSESD-VSEIPVSFGRLSHLRLLDLTGCYILELIP 384 (848)
Q Consensus 308 ~~~~~lp~~~~~l~~L~~L~L~~~~~~~~~--~~i~~l~~L~~L~l~~~~-l~~lp~~i~~L~~L~~L~l~~~~~~~~~p 384 (848)
.. -...-..+.+|+.|.+++|.+...- ...-.+++|+.|++.+|. +..-......+..|+.|+|++|.+...-.
T Consensus 187 ~~---~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~ 263 (505)
T KOG3207|consen 187 FI---SSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQ 263 (505)
T ss_pred Cc---cccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccccc
Confidence 10 0011236778999999999777432 455678999999999984 33222334557789999999987654321
Q ss_pred hhhhhccccccEEeccccccccccccccccccCcccchhhhcccCCCcEEEeeccCCCCCCCC--C-ccCCCCeEEEEeC
Q 003090 385 RGVLSRLRKLEELYMSHSFRHWQFESESEEDSSSNAKFIELGALSRLTSLHIHIPEGKIMPSD--M-SFQNLTSFSIAIG 461 (848)
Q Consensus 385 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~--~-~~~~L~~L~l~~~ 461 (848)
-...+.++.|..|+++.+.+...- .-..........+++|+.|++..|++..++.- + .+++|+.|.+..+
T Consensus 264 ~~~~~~l~~L~~Lnls~tgi~si~-------~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 264 GYKVGTLPGLNQLNLSSTGIASIA-------EPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLN 336 (505)
T ss_pred ccccccccchhhhhccccCcchhc-------CCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccc
Confidence 112688899999998888765430 01111233356778999999999988655543 2 6677777776654
Q ss_pred CC
Q 003090 462 DL 463 (848)
Q Consensus 462 ~~ 463 (848)
+.
T Consensus 337 ~l 338 (505)
T KOG3207|consen 337 YL 338 (505)
T ss_pred cc
Confidence 44
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.66 E-value=3.9e-09 Score=101.94 Aligned_cols=130 Identities=22% Similarity=0.202 Sum_probs=66.0
Q ss_pred cccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCCCCchhhhcccCcEEEccCcccc
Q 003090 255 PKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLPSSLSFLINLRTLRLHDRRIQ 334 (848)
Q Consensus 255 ~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~ 334 (848)
..|.++++++|.+..+.++. .-.+.+|+|++++ |.+.. + .++..+++|..|+|++|...
T Consensus 284 q~LtelDLS~N~I~~iDESv-KL~Pkir~L~lS~--------------N~i~~-----v-~nLa~L~~L~~LDLS~N~Ls 342 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESV-KLAPKLRRLILSQ--------------NRIRT-----V-QNLAELPQLQLLDLSGNLLA 342 (490)
T ss_pred hhhhhccccccchhhhhhhh-hhccceeEEeccc--------------cceee-----e-hhhhhcccceEeecccchhH
Confidence 34555555555555555442 4455555555555 44443 2 23555555555555555444
Q ss_pred CCchhhccccCCCEEEccCCCCcccChhhccCCcccEEeccCCccccccChhhhhccccccEEecccccccc
Q 003090 335 GDLSLIGELSGLEILDLSESDVSEIPVSFGRLSHLRLLDLTGCYILELIPRGVLSRLRKLEELYMSHSFRHW 406 (848)
Q Consensus 335 ~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~ 406 (848)
....+-.++-|.++|.+++|.++.+. ++++|.+|..||+++|++-.--...-|++|+.|+++.+.+|.+..
T Consensus 343 ~~~Gwh~KLGNIKtL~La~N~iE~LS-GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 343 ECVGWHLKLGNIKTLKLAQNKIETLS-GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hhhhhHhhhcCEeeeehhhhhHhhhh-hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 33344445555555555555555543 455555566666555433211111115566666666665555543
No 36
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.65 E-value=2.3e-08 Score=109.88 Aligned_cols=150 Identities=32% Similarity=0.417 Sum_probs=76.7
Q ss_pred CCCceeeecCCCcccCCccccc--ccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCC
Q 003090 234 DLTGISLMFNDIHEVPDELECP--KLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLF 311 (848)
Q Consensus 234 ~l~~l~l~~n~l~~lp~~~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~ 311 (848)
.++.+++.+|.+.++|...... +|+.|+++.|.+..+|.. ...+++|+.|++++ +++..
T Consensus 117 ~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~-~~~l~~L~~L~l~~--------------N~l~~---- 177 (394)
T COG4886 117 NLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSP-LRNLPNLKNLDLSF--------------NDLSD---- 177 (394)
T ss_pred ceeEEecCCcccccCccccccchhhcccccccccchhhhhhh-hhccccccccccCC--------------chhhh----
Confidence 3455555555555555555322 555555555555555432 24555555555555 55555
Q ss_pred CCCchhhhcccCcEEEccCccccCCchhhccccCCCEEEccCCCCcccChhhccCCcccEEeccCCccccccChhhhhcc
Q 003090 312 LLPSSLSFLINLRTLRLHDRRIQGDLSLIGELSGLEILDLSESDVSEIPVSFGRLSHLRLLDLTGCYILELIPRGVLSRL 391 (848)
Q Consensus 312 ~lp~~~~~l~~L~~L~L~~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~l~~l 391 (848)
+|...+.+..|+.|++++|.+...+..++...+|++|.+++|.+...+..+.++.++..+.+.++.. ..++.. ++.+
T Consensus 178 -l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~-~~~~~~-~~~l 254 (394)
T COG4886 178 -LPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKL-EDLPES-IGNL 254 (394)
T ss_pred -hhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCcee-eeccch-hccc
Confidence 4544445555555555555554444444455555555555554444444555555555555444322 222333 4555
Q ss_pred ccccEEeccccccc
Q 003090 392 RKLEELYMSHSFRH 405 (848)
Q Consensus 392 ~~L~~L~l~~~~~~ 405 (848)
++++.|++++|.+.
T Consensus 255 ~~l~~L~~s~n~i~ 268 (394)
T COG4886 255 SNLETLDLSNNQIS 268 (394)
T ss_pred cccceecccccccc
Confidence 55555555555544
No 37
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.64 E-value=3e-08 Score=109.05 Aligned_cols=191 Identities=31% Similarity=0.376 Sum_probs=158.0
Q ss_pred ceeeecCCC-cccCCcccccccceeecccCcCcccChHHHccCC-ceeEEEccCcccccccccCCCCCCCCCCCCCCCCC
Q 003090 237 GISLMFNDI-HEVPDELECPKLQALFLQENSPLAIPDRFFQGMK-DLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLP 314 (848)
Q Consensus 237 ~l~l~~n~l-~~lp~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp 314 (848)
.+.+..+.+ ..+......+.+..|.+.+|.+..+++.. ..++ +|+.|++++ +.+.. +|
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~-~~~~~nL~~L~l~~--------------N~i~~-----l~ 156 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLI-GLLKSNLKELDLSD--------------NKIES-----LP 156 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCcccc-ccchhhcccccccc--------------cchhh-----hh
Confidence 466777776 34443346688999999999999999864 4553 999999999 88888 88
Q ss_pred chhhhcccCcEEEccCccccCCchhhccccCCCEEEccCCCCcccChhhccCCcccEEeccCCccccccChhhhhccccc
Q 003090 315 SSLSFLINLRTLRLHDRRIQGDLSLIGELSGLEILDLSESDVSEIPVSFGRLSHLRLLDLTGCYILELIPRGVLSRLRKL 394 (848)
Q Consensus 315 ~~~~~l~~L~~L~L~~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~l~~l~~L 394 (848)
..++.+++|+.|++++|.+...+...+.+.+|+.|++++|.+..+|..+..+..|++|.+++|.... .+.. +.++.++
T Consensus 157 ~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~-~~~~-~~~~~~l 234 (394)
T COG4886 157 SPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIE-LLSS-LSNLKNL 234 (394)
T ss_pred hhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCccee-cchh-hhhcccc
Confidence 8899999999999999988888887779999999999999999999988888889999999975444 4444 7899999
Q ss_pred cEEeccccccccccccccccccCcccchhhhcccCCCcEEEeeccCCCCCCCCCccCCCCeEEEEeCCC
Q 003090 395 EELYMSHSFRHWQFESESEEDSSSNAKFIELGALSRLTSLHIHIPEGKIMPSDMSFQNLTSFSIAIGDL 463 (848)
Q Consensus 395 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~ 463 (848)
..|.+.++.+.. .+..++.+.+|+.|++++|.+..++....+.+++.|++..+..
T Consensus 235 ~~l~l~~n~~~~--------------~~~~~~~l~~l~~L~~s~n~i~~i~~~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 235 SGLELSNNKLED--------------LPESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDLSGNSL 289 (394)
T ss_pred cccccCCceeee--------------ccchhccccccceeccccccccccccccccCccCEEeccCccc
Confidence 999888777653 2567888899999999999999888844889999999875554
No 38
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=4.1e-08 Score=100.32 Aligned_cols=152 Identities=22% Similarity=0.214 Sum_probs=101.0
Q ss_pred ccCCceeEEEccCcccccccccCCCCCCCCCCCCCCCCC--chhhhcccCcEEEccCccccCCc---hhhccccCCCEEE
Q 003090 276 QGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLP--SSLSFLINLRTLRLHDRRIQGDL---SLIGELSGLEILD 350 (848)
Q Consensus 276 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp--~~~~~l~~L~~L~L~~~~~~~~~---~~i~~l~~L~~L~ 350 (848)
+++++||...|.+ ..+.. .+ .....|++++.|+|++|-+.... .....|++|+.|+
T Consensus 118 sn~kkL~~IsLdn--------------~~V~~-----~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LN 178 (505)
T KOG3207|consen 118 SNLKKLREISLDN--------------YRVED-----AGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLN 178 (505)
T ss_pred hhHHhhhheeecC--------------ccccc-----cchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcc
Confidence 5678888888888 44444 33 35678889999999988443322 4567889999999
Q ss_pred ccCCCCcccChh--hccCCcccEEeccCCccccccChhhhhccccccEEeccccccccccccccccccCcccchhhhccc
Q 003090 351 LSESDVSEIPVS--FGRLSHLRLLDLTGCYILELIPRGVLSRLRKLEELYMSHSFRHWQFESESEEDSSSNAKFIELGAL 428 (848)
Q Consensus 351 l~~~~l~~lp~~--i~~L~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~l 428 (848)
++.|++...-.+ -..+.+|+.|.++.|.+...--......+++|+.|++.+|..... ....-.-+
T Consensus 179 ls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~-------------~~~~~~i~ 245 (505)
T KOG3207|consen 179 LSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILI-------------KATSTKIL 245 (505)
T ss_pred cccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccce-------------ecchhhhh
Confidence 999877633222 235778888889888766433333356788888888888842211 12233445
Q ss_pred CCCcEEEeeccCCCCCCCCC---ccCCCCeEEEE
Q 003090 429 SRLTSLHIHIPEGKIMPSDM---SFQNLTSFSIA 459 (848)
Q Consensus 429 ~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~ 459 (848)
..|+.|+|++|.+-.++... .+++|..|.+.
T Consensus 246 ~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls 279 (505)
T KOG3207|consen 246 QTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLS 279 (505)
T ss_pred hHHhhccccCCcccccccccccccccchhhhhcc
Confidence 67888888888876555322 66666666665
No 39
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=2e-08 Score=97.17 Aligned_cols=186 Identities=19% Similarity=0.118 Sum_probs=101.1
Q ss_pred CCCEEEccCCCCc--ccChhhccCCcccEEeccCCccccccChhhhhccccccEEeccccccccccccccccccCcccch
Q 003090 345 GLEILDLSESDVS--EIPVSFGRLSHLRLLDLTGCYILELIPRGVLSRLRKLEELYMSHSFRHWQFESESEEDSSSNAKF 422 (848)
Q Consensus 345 ~L~~L~l~~~~l~--~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 422 (848)
.||+||++...|+ .+-.-+..+.+|+.|.+.++.....+-.. +.+=.+|+.|+++.+.--. ..+.-
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~-iAkN~~L~~lnlsm~sG~t-----------~n~~~ 253 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNT-IAKNSNLVRLNLSMCSGFT-----------ENALQ 253 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHH-Hhccccceeeccccccccc-----------hhHHH
Confidence 3677777776665 44444555666666666665554444444 5555666666666553111 11223
Q ss_pred hhhcccCCCcEEEeeccCCCCCCCCCccCCCCeEEEEeCCCCCCCCCcccceEEecccccccccccCccccchhhHHHHH
Q 003090 423 IELGALSRLTSLHIHIPEGKIMPSDMSFQNLTSFSIAIGDLEERPLSDFIGLFLQKFKKRCSRAMGLSQDMRISALHSWI 502 (848)
Q Consensus 423 ~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~~~c~~~~~l~~~~~l~~l~~~~ 502 (848)
--+..++.|..|+++|+....- .+...+
T Consensus 254 ll~~scs~L~~LNlsWc~l~~~----------------------------------------------------~Vtv~V 281 (419)
T KOG2120|consen 254 LLLSSCSRLDELNLSWCFLFTE----------------------------------------------------KVTVAV 281 (419)
T ss_pred HHHHhhhhHhhcCchHhhccch----------------------------------------------------hhhHHH
Confidence 3345555566666665543210 011112
Q ss_pred HHHHhhcceeeecccccccc--ccccccccCCCCCcEEEEecCCCceeecccccccccccCCCccEEecccccccccccc
Q 003090 503 KNLLLRSEILALAEVNYFEN--IVSDLANDGFNELMFLVIFRCNEMKYLLNSLERTLRVTLHKLEWLFIRENQNFVEICH 580 (848)
Q Consensus 503 ~~~~~~L~~L~l~~~~~~~~--~~~~l~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~ 580 (848)
....++|+.|+++||...-. ....+ ...+|+|..|++++|..++. .-......|+.|++|.++.|..+.- .
T Consensus 282 ~hise~l~~LNlsG~rrnl~~sh~~tL-~~rcp~l~~LDLSD~v~l~~----~~~~~~~kf~~L~~lSlsRCY~i~p--~ 354 (419)
T KOG2120|consen 282 AHISETLTQLNLSGYRRNLQKSHLSTL-VRRCPNLVHLDLSDSVMLKN----DCFQEFFKFNYLQHLSLSRCYDIIP--E 354 (419)
T ss_pred hhhchhhhhhhhhhhHhhhhhhHHHHH-HHhCCceeeeccccccccCc----hHHHHHHhcchheeeehhhhcCCCh--H
Confidence 22235566666666543211 01111 13678888888888877664 1223455688888888888875421 1
Q ss_pred cccccccCCCcceEEEecCch
Q 003090 581 GQLPAGCLSNVKRSDVVDCGS 601 (848)
Q Consensus 581 ~~~~~~~l~~L~~L~l~~c~~ 601 (848)
..+.....|+|.+|++.+|-.
T Consensus 355 ~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 355 TLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred HeeeeccCcceEEEEeccccC
Confidence 123345788888888888743
No 40
>PLN03150 hypothetical protein; Provisional
Probab=98.36 E-value=1.1e-06 Score=101.21 Aligned_cols=106 Identities=25% Similarity=0.328 Sum_probs=85.3
Q ss_pred cCcEEEccCccccCCc-hhhccccCCCEEEccCCCCc-ccChhhccCCcccEEeccCCccccccChhhhhccccccEEec
Q 003090 322 NLRTLRLHDRRIQGDL-SLIGELSGLEILDLSESDVS-EIPVSFGRLSHLRLLDLTGCYILELIPRGVLSRLRKLEELYM 399 (848)
Q Consensus 322 ~L~~L~L~~~~~~~~~-~~i~~l~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l 399 (848)
.++.|+|++|.+.+.+ ..++++++|+.|++++|.+. .+|..++.+++|+.|++++|.+.+.+|.. ++++++|+.|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEEC
Confidence 4778888888777654 77888999999999998887 88888889999999999998888888887 788999999999
Q ss_pred cccccccccccccccccCcccchhhhccc-CCCcEEEeeccCC
Q 003090 400 SHSFRHWQFESESEEDSSSNAKFIELGAL-SRLTSLHIHIPEG 441 (848)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~l-~~L~~L~l~~~~~ 441 (848)
++|.+.+. .+..++.+ .++..+++.+|..
T Consensus 498 s~N~l~g~-------------iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 498 NGNSLSGR-------------VPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred cCCccccc-------------CChHHhhccccCceEEecCCcc
Confidence 98888766 44455543 4677888888764
No 41
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.32 E-value=2e-07 Score=92.79 Aligned_cols=114 Identities=18% Similarity=0.063 Sum_probs=59.9
Q ss_pred hcccCcEEEccCccccCCc-----hhhccccCCCEEEccCCCCcccC--------------hhhccCCcccEEeccCCcc
Q 003090 319 FLINLRTLRLHDRRIQGDL-----SLIGELSGLEILDLSESDVSEIP--------------VSFGRLSHLRLLDLTGCYI 379 (848)
Q Consensus 319 ~l~~L~~L~L~~~~~~~~~-----~~i~~l~~L~~L~l~~~~l~~lp--------------~~i~~L~~L~~L~l~~~~~ 379 (848)
.+++|++|+|+.|-+-..- .-|..++.|++|.|.+|.+.... .-+..-++||++...+|..
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl 169 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL 169 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence 3445555555555332211 23444555666666555544111 1123345677777666533
Q ss_pred ccccCh----hhhhccccccEEeccccccccccccccccccCcccchhhhcccCCCcEEEeeccCCC
Q 003090 380 LELIPR----GVLSRLRKLEELYMSHSFRHWQFESESEEDSSSNAKFIELGALSRLTSLHIHIPEGK 442 (848)
Q Consensus 380 ~~~~p~----~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~ 442 (848)
..-+. ..+...+.|+++.+..|.+... ...+....+..+++|+.|+|..|-++
T Consensus 170 -en~ga~~~A~~~~~~~~leevr~~qN~I~~e---------G~~al~eal~~~~~LevLdl~DNtft 226 (382)
T KOG1909|consen 170 -ENGGATALAEAFQSHPTLEEVRLSQNGIRPE---------GVTALAEALEHCPHLEVLDLRDNTFT 226 (382)
T ss_pred -ccccHHHHHHHHHhccccceEEEecccccCc---------hhHHHHHHHHhCCcceeeecccchhh
Confidence 22221 1145566777777777665432 22345566777778888887777544
No 42
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.27 E-value=2.5e-06 Score=89.64 Aligned_cols=166 Identities=16% Similarity=0.217 Sum_probs=92.1
Q ss_pred cCCCccEEecccccccccccccccccccCCCcceEEEecCchhhHhhhHHHHHhhccCcEEEEeccCCceeeeecccccc
Q 003090 560 TLHKLEWLFIRENQNFVEICHGQLPAGCLSNVKRSDVVDCGSILKILLSHLVQSFQNLQRLRVYSCGLLVSVFEIERVNI 639 (848)
Q Consensus 560 ~~p~L~~L~l~~~~~L~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~ 639 (848)
.++++++|++++| .++.+ | ...++|++|.+.+|..+ ..+|..+ .++|++|.+++|..+..+|
T Consensus 50 ~~~~l~~L~Is~c-~L~sL-----P-~LP~sLtsL~Lsnc~nL-tsLP~~L---P~nLe~L~Ls~Cs~L~sLP------- 111 (426)
T PRK15386 50 EARASGRLYIKDC-DIESL-----P-VLPNELTEITIENCNNL-TTLPGSI---PEGLEKLTVCHCPEISGLP------- 111 (426)
T ss_pred HhcCCCEEEeCCC-CCccc-----C-CCCCCCcEEEccCCCCc-ccCCchh---hhhhhheEccCcccccccc-------
Confidence 3577788888877 56554 2 12235888888888877 7777533 2577777777777666554
Q ss_pred ccccccccCCcCEEecCCCccccccccCCCccccccCccEEEeecCccccccccCccccccccceeeeccccccceeeee
Q 003090 640 AKEETELFSSLEKLTLWDLPRMTDIWKGDTQFVSLHNLKKVRVEECDELRQVFPANFGKKAAAEEMVLYRKRRDQIHIHA 719 (848)
Q Consensus 640 ~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~l~~l~~L~~L~i~~C~~L~~~~p~~~~~~~~~~~l~l~~l~~~~l~i~~ 719 (848)
++|+.|++. +..+..+..- .++|+.|.+.++......
T Consensus 112 --------~sLe~L~L~-~n~~~~L~~L------PssLk~L~I~~~n~~~~~---------------------------- 148 (426)
T PRK15386 112 --------ESVRSLEIK-GSATDSIKNV------PNGLTSLSINSYNPENQA---------------------------- 148 (426)
T ss_pred --------cccceEEeC-CCCCcccccC------cchHhheecccccccccc----------------------------
Confidence 246666654 2222222110 135666665432111000
Q ss_pred cCCCCCCCCCCCCccEEEEecCCCCceecccchhhccccccEEEEecccccceeecCCcccccccCCCccceeccccccc
Q 003090 720 TTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVRSCPTLQEIIMDDEGEVGLQGASTKKITFPSLFGI 799 (848)
Q Consensus 720 c~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~~l~~~~~~~~~~~sL~~L 799 (848)
..+ ...+++|+.|+|.+|..+. +|+ . -..+|+.|++..+... ++..... .+ ++++ .|
T Consensus 149 --~lp--~~LPsSLk~L~Is~c~~i~-LP~-~---LP~SLk~L~ls~n~~~-sLeI~~~---sL---------P~nl-~L 205 (426)
T PRK15386 149 --RID--NLISPSLKTLSLTGCSNII-LPE-K---LPESLQSITLHIEQKT-TWNISFE---GF---------PDGL-DI 205 (426)
T ss_pred --ccc--cccCCcccEEEecCCCccc-Ccc-c---ccccCcEEEecccccc-cccCccc---cc---------cccc-Ee
Confidence 001 1234789999999998764 322 1 1258999998775311 1100111 12 5667 88
Q ss_pred cccccccccc
Q 003090 800 KLCDLDSLAC 809 (848)
Q Consensus 800 ~i~~cp~L~~ 809 (848)
.+.+|-++..
T Consensus 206 ~f~n~lkL~~ 215 (426)
T PRK15386 206 DLQNSVLLSP 215 (426)
T ss_pred chhhhcccCH
Confidence 8888865544
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=7.3e-08 Score=93.42 Aligned_cols=16 Identities=19% Similarity=0.092 Sum_probs=8.9
Q ss_pred cCCCCCcEEEEecCCC
Q 003090 530 DGFNELMFLVIFRCNE 545 (848)
Q Consensus 530 ~~l~~L~~L~l~~~~~ 545 (848)
.++..|.+|+|++|..
T Consensus 257 ~scs~L~~LNlsWc~l 272 (419)
T KOG2120|consen 257 SSCSRLDELNLSWCFL 272 (419)
T ss_pred HhhhhHhhcCchHhhc
Confidence 3455566666666643
No 44
>PLN03150 hypothetical protein; Provisional
Probab=98.23 E-value=2.9e-06 Score=97.77 Aligned_cols=104 Identities=24% Similarity=0.287 Sum_probs=88.9
Q ss_pred CCCEEEccCCCCc-ccChhhccCCcccEEeccCCccccccChhhhhccccccEEeccccccccccccccccccCcccchh
Q 003090 345 GLEILDLSESDVS-EIPVSFGRLSHLRLLDLTGCYILELIPRGVLSRLRKLEELYMSHSFRHWQFESESEEDSSSNAKFI 423 (848)
Q Consensus 345 ~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 423 (848)
.++.|+|++|.+. .+|..++++++|++|++++|.+.+.+|.. ++.+++|+.|++++|.+.+. .+.
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~-~~~l~~L~~LdLs~N~lsg~-------------iP~ 484 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPS-LGSITSLEVLDLSYNSFNGS-------------IPE 484 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChH-HhCCCCCCEEECCCCCCCCC-------------Cch
Confidence 4789999999998 89999999999999999999998899988 89999999999999998876 677
Q ss_pred hhcccCCCcEEEeeccCCC-CCCCCC--ccCCCCeEEEEeCC
Q 003090 424 ELGALSRLTSLHIHIPEGK-IMPSDM--SFQNLTSFSIAIGD 462 (848)
Q Consensus 424 ~L~~l~~L~~L~l~~~~~~-~~~~~~--~~~~L~~L~l~~~~ 462 (848)
.++++++|+.|++++|.+. .+|..+ ...++..+.+..+.
T Consensus 485 ~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 485 SLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred HHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence 8999999999999999876 666655 23456666666443
No 45
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.13 E-value=1.2e-06 Score=66.92 Aligned_cols=60 Identities=37% Similarity=0.512 Sum_probs=39.8
Q ss_pred cccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCCCCchhhhcccCcEEEccCcc
Q 003090 255 PKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLPSSLSFLINLRTLRLHDRR 332 (848)
Q Consensus 255 ~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp~~~~~l~~L~~L~L~~~~ 332 (848)
++|++|++++|.+..+|+..|.++++|++|++++ +.+... -|..|..+++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~--------------N~l~~i----~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSN--------------NNLTSI----PPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETS--------------SSESEE----ETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccC--------------CccCcc----CHHHHcCCCCCCEEeCcCCc
Confidence 4566777777777777766677777777777776 666552 33456666677777766664
No 46
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.11 E-value=7e-06 Score=86.32 Aligned_cols=58 Identities=19% Similarity=0.168 Sum_probs=34.7
Q ss_pred CCCCccEEEEecCCCCceecccchhhccccccEEEEecccccceeecCCcccccccCCCccceecccccccccccc
Q 003090 729 SLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVRSCPTLQEIIMDDEGEVGLQGASTKKITFPSLFGIKLCDL 804 (848)
Q Consensus 729 ~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~~l~~~~~~~~~~~sL~~L~i~~c 804 (848)
.+++|++|.+.++......+.. ..-.++|++|.|.+|..+. + ++ ++ +.+|+.|.+..+
T Consensus 130 LPssLk~L~I~~~n~~~~~~lp--~~LPsSLk~L~Is~c~~i~-L--P~----~L---------P~SLk~L~ls~n 187 (426)
T PRK15386 130 VPNGLTSLSINSYNPENQARID--NLISPSLKTLSLTGCSNII-L--PE----KL---------PESLQSITLHIE 187 (426)
T ss_pred CcchHhheeccccccccccccc--cccCCcccEEEecCCCccc-C--cc----cc---------cccCcEEEeccc
Confidence 3456888888654322111100 0112689999999998663 1 21 22 678999998664
No 47
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.02 E-value=5.4e-06 Score=63.27 Aligned_cols=58 Identities=40% Similarity=0.558 Sum_probs=32.8
Q ss_pred CCCEEEccCCCCcccCh-hhccCCcccEEeccCCccccccChhhhhccccccEEeccccc
Q 003090 345 GLEILDLSESDVSEIPV-SFGRLSHLRLLDLTGCYILELIPRGVLSRLRKLEELYMSHSF 403 (848)
Q Consensus 345 ~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~ 403 (848)
+|++|++++|+++.+|. .+..+++|++|++++|.. ..++++.+.++++|++|++++|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l-~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNL-TSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSE-SEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCcc-CccCHHHHcCCCCCCEEeCcCCc
Confidence 45566666666665553 345566666666665444 33444445666666666666554
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.95 E-value=7e-07 Score=96.92 Aligned_cols=119 Identities=24% Similarity=0.224 Sum_probs=92.1
Q ss_pred CCCCCCCCCCCCchhhhcccCcEEEccCccccCCchhhccccCCCEEEccCCCCcccChhhccCCcccEEeccCCccccc
Q 003090 303 PPLPSSPLFLLPSSLSFLINLRTLRLHDRRIQGDLSLIGELSGLEILDLSESDVSEIPVSFGRLSHLRLLDLTGCYILEL 382 (848)
Q Consensus 303 ~~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~ 382 (848)
|.+.. +..++.-+++|+.|+|++|++... ..+..|++|++|||++|.+..+|.--..-.+|+.|++++|.. ..
T Consensus 174 N~L~~-----mD~SLqll~ale~LnLshNk~~~v-~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l-~t 246 (1096)
T KOG1859|consen 174 NRLVL-----MDESLQLLPALESLNLSHNKFTKV-DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNAL-TT 246 (1096)
T ss_pred hhHHh-----HHHHHHHHHHhhhhccchhhhhhh-HHHHhcccccccccccchhccccccchhhhhheeeeecccHH-Hh
Confidence 55555 667788899999999999966554 488999999999999999998885322223499999999754 44
Q ss_pred cChhhhhccccccEEeccccccccccccccccccCcccchhhhcccCCCcEEEeeccCCC
Q 003090 383 IPRGVLSRLRKLEELYMSHSFRHWQFESESEEDSSSNAKFIELGALSRLTSLHIHIPEGK 442 (848)
Q Consensus 383 ~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~ 442 (848)
+- + +.+|.+|+.|++++|.+... ....-|..|..|+.|.|.+|.+-
T Consensus 247 L~-g-ie~LksL~~LDlsyNll~~h------------seL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 247 LR-G-IENLKSLYGLDLSYNLLSEH------------SELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hh-h-HHhhhhhhccchhHhhhhcc------------hhhhHHHHHHHHHHHhhcCCccc
Confidence 44 3 78999999999999987653 24556777888999999998765
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.88 E-value=1.4e-06 Score=84.74 Aligned_cols=110 Identities=24% Similarity=0.283 Sum_probs=76.4
Q ss_pred cccCcEEEccCccccCC--chhh-ccccCCCEEEccCCCCc---ccChhhccCCcccEEeccCCccccccChhhhhcccc
Q 003090 320 LINLRTLRLHDRRIQGD--LSLI-GELSGLEILDLSESDVS---EIPVSFGRLSHLRLLDLTGCYILELIPRGVLSRLRK 393 (848)
Q Consensus 320 l~~L~~L~L~~~~~~~~--~~~i-~~l~~L~~L~l~~~~l~---~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~l~~l~~ 393 (848)
+..+..|.+.++.+-.. ...| ...++++.||+.+|.|+ ++...+.+|+.|++|+++.|.....+... -.-+.+
T Consensus 44 ~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~l-p~p~~n 122 (418)
T KOG2982|consen 44 LRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSL-PLPLKN 122 (418)
T ss_pred ccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccC-cccccc
Confidence 33455666777644433 2334 46788999999999887 55566778999999999988665444331 124568
Q ss_pred ccEEeccccccccccccccccccCcccchhhhcccCCCcEEEeeccCCC
Q 003090 394 LEELYMSHSFRHWQFESESEEDSSSNAKFIELGALSRLTSLHIHIPEGK 442 (848)
Q Consensus 394 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~ 442 (848)
|+.|.+.+..+.|. ..-..+..++.++.|+++.|+..
T Consensus 123 l~~lVLNgT~L~w~------------~~~s~l~~lP~vtelHmS~N~~r 159 (418)
T KOG2982|consen 123 LRVLVLNGTGLSWT------------QSTSSLDDLPKVTELHMSDNSLR 159 (418)
T ss_pred eEEEEEcCCCCChh------------hhhhhhhcchhhhhhhhccchhh
Confidence 99999999888875 23456778888888888877443
No 50
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.87 E-value=2.1e-06 Score=94.48 Aligned_cols=182 Identities=29% Similarity=0.318 Sum_probs=99.6
Q ss_pred eeeecCCCcccCCcc-cccccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCCCCch
Q 003090 238 ISLMFNDIHEVPDEL-ECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLPSS 316 (848)
Q Consensus 238 l~l~~n~l~~lp~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp~~ 316 (848)
+++..|.+..+-..+ .+.+|..|++..|.+..+... +..+++|++|++++ |.|.. + ..
T Consensus 77 l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~--------------N~I~~-----i-~~ 135 (414)
T KOG0531|consen 77 LNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSF--------------NKITK-----L-EG 135 (414)
T ss_pred hccchhhhhhhhcccccccceeeeeccccchhhcccc-hhhhhcchheeccc--------------ccccc-----c-cc
Confidence 334555555433323 556666666666666655542 24566777777776 56655 2 33
Q ss_pred hhhcccCcEEEccCccccCCchhhccccCCCEEEccCCCCcccChh-hccCCcccEEeccCCccccccChhhhhcccccc
Q 003090 317 LSFLINLRTLRLHDRRIQGDLSLIGELSGLEILDLSESDVSEIPVS-FGRLSHLRLLDLTGCYILELIPRGVLSRLRKLE 395 (848)
Q Consensus 317 ~~~l~~L~~L~L~~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~~l~~l~~L~ 395 (848)
+..+..|+.|++.+|. ...+..+..+++|+.+++++|.+..+... ...+.+|+.+.+.+|.... +.. +..+..+.
T Consensus 136 l~~l~~L~~L~l~~N~-i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~-i~~--~~~~~~l~ 211 (414)
T KOG0531|consen 136 LSTLTLLKELNLSGNL-ISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIRE-IEG--LDLLKKLV 211 (414)
T ss_pred hhhccchhhheeccCc-chhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhc-ccc--hHHHHHHH
Confidence 5566667777777763 33344444567777777777777666543 4666777777777654322 211 23344444
Q ss_pred EEeccccccccccccccccccCcccchhhhcccCC--CcEEEeeccCCCCCCCCC-ccCCCCeEEEE
Q 003090 396 ELYMSHSFRHWQFESESEEDSSSNAKFIELGALSR--LTSLHIHIPEGKIMPSDM-SFQNLTSFSIA 459 (848)
Q Consensus 396 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~--L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~ 459 (848)
.+++..|.+... ..+..+.. |+.+++.++.+...+..+ .+.++..|++.
T Consensus 212 ~~~l~~n~i~~~---------------~~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~ 263 (414)
T KOG0531|consen 212 LLSLLDNKISKL---------------EGLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLS 263 (414)
T ss_pred Hhhcccccceec---------------cCcccchhHHHHHHhcccCccccccccccccccccccchh
Confidence 445555544321 22233332 677777777766553333 55555555544
No 51
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.80 E-value=2.9e-06 Score=72.95 Aligned_cols=107 Identities=22% Similarity=0.332 Sum_probs=63.8
Q ss_pred ceeeecCCCcccCCcc----cccccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCC
Q 003090 237 GISLMFNDIHEVPDEL----ECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFL 312 (848)
Q Consensus 237 ~l~l~~n~l~~lp~~~----~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 312 (848)
.++|+.+.+-.+++.. ....|...++++|.+.++|+.+-.+++.+..|++.+ |.+..
T Consensus 31 ~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~--------------neisd----- 91 (177)
T KOG4579|consen 31 FLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLAN--------------NEISD----- 91 (177)
T ss_pred hcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcch--------------hhhhh-----
Confidence 3555555544443332 334455556666666666666555566666666666 66666
Q ss_pred CCchhhhcccCcEEEccCccccCCchhhccccCCCEEEccCCCCcccChh
Q 003090 313 LPSSLSFLINLRTLRLHDRRIQGDLSLIGELSGLEILDLSESDVSEIPVS 362 (848)
Q Consensus 313 lp~~~~~l~~L~~L~L~~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~ 362 (848)
+|..+..++.||.|+++.|.+...+..|..|.+|-+|+..+|.+..+|-.
T Consensus 92 vPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 92 VPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred chHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence 66666666666666666666666665565566666666666666655543
No 52
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.76 E-value=1.2e-06 Score=95.16 Aligned_cols=50 Identities=24% Similarity=0.308 Sum_probs=25.1
Q ss_pred ceeeecCCCcccCCcc-cccccceeecccCcCcccChHHHccCCceeEEEccC
Q 003090 237 GISLMFNDIHEVPDEL-ECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGG 288 (848)
Q Consensus 237 ~l~l~~n~l~~lp~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~ 288 (848)
..+.++|.+..+...+ -++.++.|+|+.|...++. .+..+++|+.|||++
T Consensus 168 ~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsy 218 (1096)
T KOG1859|consen 168 TASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSY 218 (1096)
T ss_pred hhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhccccccccccc
Confidence 3445555555444444 3455555555555544443 234555555555555
No 53
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.74 E-value=1.7e-05 Score=91.11 Aligned_cols=155 Identities=22% Similarity=0.270 Sum_probs=104.3
Q ss_pred CCceeEEEccCcccccccccCCCCCCCCCCCCCCCCCchhh-hcccCcEEEccCccccCCc--hhhccccCCCEEEccCC
Q 003090 278 MKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLPSSLS-FLINLRTLRLHDRRIQGDL--SLIGELSGLEILDLSES 354 (848)
Q Consensus 278 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp~~~~-~l~~L~~L~L~~~~~~~~~--~~i~~l~~L~~L~l~~~ 354 (848)
-.+|+.|++++. ..+... .|..++ .|++|+.|.+.+-.+...- .-..+++||..||++++
T Consensus 121 r~nL~~LdI~G~-------------~~~s~~----W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T 183 (699)
T KOG3665|consen 121 RQNLQHLDISGS-------------ELFSNG----WPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT 183 (699)
T ss_pred HHhhhhcCcccc-------------chhhcc----HHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC
Confidence 457888998882 222222 445554 6789999999997665442 45578999999999999
Q ss_pred CCcccChhhccCCcccEEeccCCcccccc-ChhhhhccccccEEeccccccccccccccccccCcccchhhhcccCCCcE
Q 003090 355 DVSEIPVSFGRLSHLRLLDLTGCYILELI-PRGVLSRLRKLEELYMSHSFRHWQFESESEEDSSSNAKFIELGALSRLTS 433 (848)
Q Consensus 355 ~l~~lp~~i~~L~~L~~L~l~~~~~~~~~-p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~ 433 (848)
+++.+ .++++|++|+.|.+.+-.+...- -.+ +.+|++|+.||++........ .-.....+.-..|++||.
T Consensus 184 nI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~-LF~L~~L~vLDIS~~~~~~~~-------~ii~qYlec~~~LpeLrf 254 (699)
T KOG3665|consen 184 NISNL-SGISRLKNLQVLSMRNLEFESYQDLID-LFNLKKLRVLDISRDKNNDDT-------KIIEQYLECGMVLPELRF 254 (699)
T ss_pred CccCc-HHHhccccHHHHhccCCCCCchhhHHH-HhcccCCCeeeccccccccch-------HHHHHHHHhcccCccccE
Confidence 99988 78999999999999874443211 123 789999999999986543320 001112334456889999
Q ss_pred EEeeccCCCC-CCCCC--ccCCCCeEEE
Q 003090 434 LHIHIPEGKI-MPSDM--SFQNLTSFSI 458 (848)
Q Consensus 434 L~l~~~~~~~-~~~~~--~~~~L~~L~l 458 (848)
||.+++.+.. +...+ ..++|+....
T Consensus 255 LDcSgTdi~~~~le~ll~sH~~L~~i~~ 282 (699)
T KOG3665|consen 255 LDCSGTDINEEILEELLNSHPNLQQIAA 282 (699)
T ss_pred EecCCcchhHHHHHHHHHhCccHhhhhh
Confidence 9999887652 11111 4555655443
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.72 E-value=3.5e-05 Score=88.52 Aligned_cols=144 Identities=22% Similarity=0.273 Sum_probs=86.2
Q ss_pred CCchhHHHHHHHhcc---CCCceeeecCCCc--ccCCcc--cccccceeecccCcCcc-cChHHHccCCceeEEEccCcc
Q 003090 219 TPSITKIQYEIAGWL---DLTGISLMFNDIH--EVPDEL--ECPKLQALFLQENSPLA-IPDRFFQGMKDLQVLDLGGIR 290 (848)
Q Consensus 219 ~~~~~~l~~~i~~~~---~l~~l~l~~n~l~--~lp~~~--~~~~L~~L~l~~~~~~~-~~~~~~~~~~~Lr~L~l~~~~ 290 (848)
.-|+..+.+.++... .++.|++++...- .-|..+ .+|.|++|.+++-.... --..++.++++|+.||+++
T Consensus 105 ~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~-- 182 (699)
T KOG3665|consen 105 TIDIISLLKDLLNEESRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISG-- 182 (699)
T ss_pred hccHHHHHHHHHhHHHHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCC--
Confidence 356677777776544 3667777664322 112222 56788888777653211 1123456788888888888
Q ss_pred cccccccCCCCCCCCCCCCCCCCCchhhhcccCcEEEccCccccCC--chhhccccCCCEEEccCCCCcccChh------
Q 003090 291 RFSFSVRFPFLFPPLPSSPLFLLPSSLSFLINLRTLRLHDRRIQGD--LSLIGELSGLEILDLSESDVSEIPVS------ 362 (848)
Q Consensus 291 ~~~~~~~~~~~~~~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~--~~~i~~l~~L~~L~l~~~~l~~lp~~------ 362 (848)
++++. + ..+++|++|+.|.+.+-.+... +..+.+|++|++||+|......-+..
T Consensus 183 ------------TnI~n-----l-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYle 244 (699)
T KOG3665|consen 183 ------------TNISN-----L-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLE 244 (699)
T ss_pred ------------CCccC-----c-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHH
Confidence 66666 4 5677888888887777655542 36677788888888877644433311
Q ss_pred -hccCCcccEEeccCCccccc
Q 003090 363 -FGRLSHLRLLDLTGCYILEL 382 (848)
Q Consensus 363 -i~~L~~L~~L~l~~~~~~~~ 382 (848)
-..|++||.||.++......
T Consensus 245 c~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 245 CGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred hcccCccccEEecCCcchhHH
Confidence 12356666666665443333
No 55
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.68 E-value=4.5e-06 Score=94.88 Aligned_cols=174 Identities=18% Similarity=0.173 Sum_probs=96.6
Q ss_pred HhhcceeeeccccccccccccccccCCCCCcEEEEecC-CCceeecccccccccccCCCccEEecccccccccccccccc
Q 003090 506 LLRSEILALAEVNYFENIVSDLANDGFNELMFLVIFRC-NEMKYLLNSLERTLRVTLHKLEWLFIRENQNFVEICHGQLP 584 (848)
Q Consensus 506 ~~~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~~~-~~l~~l~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~ 584 (848)
.+.|+.|.+.++..+.+.........+++|+.|++.+| ...... ..........+++|+.|+++.+..+++.....+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLS-PLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccc-hhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 57788888888877665221111246688888888874 222211 1011123445688888888888765544221111
Q ss_pred cccCCCcceEEEecCchhhHhhhHHHHHhhccCcEEEEeccCCceeeeeccccccccccccccCCcCEEecCCC---ccc
Q 003090 585 AGCLSNVKRSDVVDCGSILKILLSHLVQSFQNLQRLRVYSCGLLVSVFEIERVNIAKEETELFSSLEKLTLWDL---PRM 661 (848)
Q Consensus 585 ~~~l~~L~~L~l~~c~~l~~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c---~~L 661 (848)
. .+++|+.|.+.+|..++..--..+...+++|++|++++|..+++-.-. .....+++|+.|.+..+ +.+
T Consensus 266 ~-~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~-------~~~~~c~~l~~l~~~~~~~c~~l 337 (482)
T KOG1947|consen 266 S-RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLE-------ALLKNCPNLRELKLLSLNGCPSL 337 (482)
T ss_pred h-hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHH-------HHHHhCcchhhhhhhhcCCCccH
Confidence 1 378888888888886523333445577888888888888877332100 11334565555554443 334
Q ss_pred cccccCCCccccc--cCccEEEeecCccccc
Q 003090 662 TDIWKGDTQFVSL--HNLKKVRVEECDELRQ 690 (848)
Q Consensus 662 ~~l~~~~~~l~~l--~~L~~L~i~~C~~L~~ 690 (848)
+...-.. .... ..+..+.+.+|+++++
T Consensus 338 ~~~~l~~--~~~~~~d~~~~~~~~~~~~l~~ 366 (482)
T KOG1947|consen 338 TDLSLSG--LLTLTSDDLAELILRSCPKLTD 366 (482)
T ss_pred HHHHHHH--hhccCchhHhHHHHhcCCCcch
Confidence 4432111 1111 1456666666666655
No 56
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.67 E-value=6.3e-06 Score=90.72 Aligned_cols=170 Identities=26% Similarity=0.268 Sum_probs=114.6
Q ss_pred cccccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCCCCchhhhcccCcEEEccCcc
Q 003090 253 ECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLPSSLSFLINLRTLRLHDRR 332 (848)
Q Consensus 253 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp~~~~~l~~L~~L~L~~~~ 332 (848)
.+..+..+++..|.+..+... +..+++|..|++.+ +.+.. +...+..+.+|++|++++|
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~-l~~~~~l~~l~l~~--------------n~i~~-----i~~~l~~~~~L~~L~ls~N- 128 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNH-LSKLKSLEALDLYD--------------NKIEK-----IENLLSSLVNLQVLDLSFN- 128 (414)
T ss_pred HhHhHHhhccchhhhhhhhcc-cccccceeeeeccc--------------cchhh-----cccchhhhhcchheecccc-
Confidence 455666677777777663332 46788899999998 88877 5444778889999999998
Q ss_pred ccCCchhhccccCCCEEEccCCCCcccChhhccCCcccEEeccCCccccccCh-hhhhccccccEEeccccccccccccc
Q 003090 333 IQGDLSLIGELSGLEILDLSESDVSEIPVSFGRLSHLRLLDLTGCYILELIPR-GVLSRLRKLEELYMSHSFRHWQFESE 411 (848)
Q Consensus 333 ~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~-~~l~~l~~L~~L~l~~~~~~~~~~~~ 411 (848)
....+..+..+..|+.|++++|.++.++ .+..+.+|+.+++++|.... +.. . ...+.+++.+++.+|.+..
T Consensus 129 ~I~~i~~l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l~l~~n~i~~-ie~~~-~~~~~~l~~l~l~~n~i~~----- 200 (414)
T KOG0531|consen 129 KITKLEGLSTLTLLKELNLSGNLISDIS-GLESLKSLKLLDLSYNRIVD-IENDE-LSELISLEELDLGGNSIRE----- 200 (414)
T ss_pred ccccccchhhccchhhheeccCcchhcc-CCccchhhhcccCCcchhhh-hhhhh-hhhccchHHHhccCCchhc-----
Confidence 4555666777778999999999888775 45668888999998876543 333 2 3678888888888887653
Q ss_pred cccccCcccchhhhcccCCCcEEEeeccCCCCCCCCCccCC--CCeEEEEeC
Q 003090 412 SEEDSSSNAKFIELGALSRLTSLHIHIPEGKIMPSDMSFQN--LTSFSIAIG 461 (848)
Q Consensus 412 ~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~--L~~L~l~~~ 461 (848)
+..+..+..+..+++..|.+..+........ |+.+++..+
T Consensus 201 ----------i~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n 242 (414)
T KOG0531|consen 201 ----------IEGLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGN 242 (414)
T ss_pred ----------ccchHHHHHHHHhhcccccceeccCcccchhHHHHHHhcccC
Confidence 2334444455555666666554332222222 555555533
No 57
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.52 E-value=0.00013 Score=76.04 Aligned_cols=51 Identities=16% Similarity=0.149 Sum_probs=45.4
Q ss_pred cEEEEEeCCCCchhHHHHHHHHHHhhccccCcEEEEEeccCC--chhHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQAKEMKMFDDVAMAVVSQTP--SITKIQYEIA 230 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~l~~~i~ 230 (848)
....|+|.+|+||||||+.||++.... +|+.++|+++++.+ ++..+++.+.
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIl 222 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVK 222 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhc
Confidence 458899999999999999999998766 89999999999988 7788888775
No 58
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.52 E-value=9.5e-05 Score=51.45 Aligned_cols=36 Identities=33% Similarity=0.572 Sum_probs=23.6
Q ss_pred cCCCEEEccCCCCcccChhhccCCcccEEeccCCcc
Q 003090 344 SGLEILDLSESDVSEIPVSFGRLSHLRLLDLTGCYI 379 (848)
Q Consensus 344 ~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~ 379 (848)
++|++|++++|+|+.+|..+++|++|++|++++|.+
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCC
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCC
Confidence 356777777777777776677777777777777644
No 59
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.52 E-value=0.00011 Score=51.20 Aligned_cols=40 Identities=33% Similarity=0.457 Sum_probs=28.6
Q ss_pred ccCcEEEccCccccCCchhhccccCCCEEEccCCCCcccC
Q 003090 321 INLRTLRLHDRRIQGDLSLIGELSGLEILDLSESDVSEIP 360 (848)
Q Consensus 321 ~~L~~L~L~~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp 360 (848)
++|++|++++|.+...++.+++|++|++|++++|+++.+|
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 3678888888877655556888888888888888777665
No 60
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.47 E-value=5.9e-06 Score=93.92 Aligned_cols=145 Identities=21% Similarity=0.142 Sum_probs=91.2
Q ss_pred CCCCCcEEEEecCCCceeecccccccccccCCCccEEecccc-ccccccccc-ccccccCCCcceEEEecCchhhHhhhH
Q 003090 531 GFNELMFLVIFRCNEMKYLLNSLERTLRVTLHKLEWLFIREN-QNFVEICHG-QLPAGCLSNVKRSDVVDCGSILKILLS 608 (848)
Q Consensus 531 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~p~L~~L~l~~~-~~L~~~~~~-~~~~~~l~~L~~L~l~~c~~l~~~l~~ 608 (848)
.+++|+.|.+.+|..+... .........+.|++|++.++ ......... ..-...+++|+.|++..|..++...-.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~ 262 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDD---SLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLS 262 (482)
T ss_pred hCchhhHhhhcccccCChh---hHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHH
Confidence 4799999999999887642 11234556799999999873 222111000 011225689999999999866334444
Q ss_pred HHHHhhccCcEEEEeccCCceeeeeccccccccccccccCCcCEEecCCCccccccccCCCccccccCccEEEeecCc
Q 003090 609 HLVQSFQNLQRLRVYSCGLLVSVFEIERVNIAKEETELFSSLEKLTLWDLPRMTDIWKGDTQFVSLHNLKKVRVEECD 686 (848)
Q Consensus 609 ~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~l~~l~~L~~L~i~~C~ 686 (848)
.++..+++|++|.+.+|..++.-.- ......++.|++|+|++|..+..-.-... ..++++|+.|.+..++
T Consensus 263 ~l~~~c~~L~~L~l~~c~~lt~~gl-------~~i~~~~~~L~~L~l~~c~~~~d~~l~~~-~~~c~~l~~l~~~~~~ 332 (482)
T KOG1947|consen 263 ALASRCPNLETLSLSNCSNLTDEGL-------VSIAERCPSLRELDLSGCHGLTDSGLEAL-LKNCPNLRELKLLSLN 332 (482)
T ss_pred HHHhhCCCcceEccCCCCccchhHH-------HHHHHhcCcccEEeeecCccchHHHHHHH-HHhCcchhhhhhhhcC
Confidence 4555689999999999987543311 02345678899999999988743211111 2446666665555444
No 61
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=97.46 E-value=0.0016 Score=58.83 Aligned_cols=113 Identities=12% Similarity=0.167 Sum_probs=83.8
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Q 003090 2 ATETVASVTQPITERIVDVLFNATVRQFGYLCKYKHYIEALRTEAKKLTDRRNDLQAEIDAATRNREVIKDEVKSWIAEV 81 (848)
Q Consensus 2 a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~L~~~l~~i~~~l~~a~~~~~~~~~~v~~wl~~l 81 (848)
|+.++++|++++++.+.. .+.+.. +.....+.-+++|..+++.|...+++.+..+..-+..-+.=++++
T Consensus 3 ~eL~~gaalG~~~~eLlk----~v~~~~-------~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L 71 (147)
T PF05659_consen 3 AELVGGAALGAVFGELLK----AVIDAS-------KKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERL 71 (147)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHH-------HHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHH
Confidence 455677778888877777 333332 223466778888999999999999988876444444447778899
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCcccchhhHhHHhHHHHHHHHHHHHHHH
Q 003090 82 NDIIPKAEKFLEDEVKVNKKCLGGLCVDLKSRYKLSREAEEKTLAMSALMA 132 (848)
Q Consensus 82 k~~~~d~eD~lde~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~v~~~~~ 132 (848)
++...++++++.++.+.. .+++...++.+++|+++.+.+....+
T Consensus 72 ~~~L~~g~~LV~k~sk~~-------r~n~~kk~~y~~Ki~~le~~l~~f~~ 115 (147)
T PF05659_consen 72 KELLEKGKELVEKCSKVR-------RWNLYKKPRYARKIEELEESLRRFIQ 115 (147)
T ss_pred HHHHHHHHHHHHHhcccc-------HHHHHhhHhHHHHHHHHHHHHHHHhc
Confidence 999999999988874432 35677888999999999999887664
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.40 E-value=0.00015 Score=67.07 Aligned_cols=101 Identities=27% Similarity=0.308 Sum_probs=53.4
Q ss_pred ccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCCCCchhhhcccCcEEEccCccccC
Q 003090 256 KLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLPSSLSFLINLRTLRLHDRRIQG 335 (848)
Q Consensus 256 ~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~ 335 (848)
....+++++|.+..++. |..++.|..|.+.+ |.+... -|.--..+++|..|.|.+|++..
T Consensus 43 ~~d~iDLtdNdl~~l~~--lp~l~rL~tLll~n--------------NrIt~I----~p~L~~~~p~l~~L~LtnNsi~~ 102 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDN--LPHLPRLHTLLLNN--------------NRITRI----DPDLDTFLPNLKTLILTNNSIQE 102 (233)
T ss_pred ccceecccccchhhccc--CCCccccceEEecC--------------Ccceee----ccchhhhccccceEEecCcchhh
Confidence 34445555555544443 44555555555555 444442 22222234445555555554443
Q ss_pred C--chhhccccCCCEEEccCCCCcccCh----hhccCCcccEEeccC
Q 003090 336 D--LSLIGELSGLEILDLSESDVSEIPV----SFGRLSHLRLLDLTG 376 (848)
Q Consensus 336 ~--~~~i~~l~~L~~L~l~~~~l~~lp~----~i~~L~~L~~L~l~~ 376 (848)
. +..+..++.|++|.+-+|.++..+. -+.++++|++||+.+
T Consensus 103 l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 103 LGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred hhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 2 3455556666666666666553332 366777777777765
No 63
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.39 E-value=0.00024 Score=71.09 Aligned_cols=50 Identities=18% Similarity=0.181 Sum_probs=45.2
Q ss_pred cEEEEEeCCCCchhHHHHHHHHHHhhccccCcEEEEEeccC--CchhHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQAKEMKMFDDVAMAVVSQT--PSITKIQYEI 229 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~l~~~i 229 (848)
..+.|+|.+|+||||+++.+|++.... +|+..+|++++.+ +++.++++.+
T Consensus 17 qr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I 68 (249)
T cd01128 17 QRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSV 68 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHh
Confidence 579999999999999999999987655 8999999998887 7888998888
No 64
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.32 E-value=0.00043 Score=64.19 Aligned_cols=51 Identities=25% Similarity=0.318 Sum_probs=23.8
Q ss_pred eeeecCCCcccCCcccccccceeecccCcCcccChHHHccCCceeEEEccC
Q 003090 238 ISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGG 288 (848)
Q Consensus 238 l~l~~n~l~~lp~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~ 288 (848)
+++++|++..++..-++++|.+|.+++|.+..+.+.+-.-+++|..|.|.+
T Consensus 47 iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn 97 (233)
T KOG1644|consen 47 IDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN 97 (233)
T ss_pred ecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecC
Confidence 444444444444333444455555555544444444433344444555444
No 65
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.22 E-value=9.2e-05 Score=63.91 Aligned_cols=95 Identities=25% Similarity=0.325 Sum_probs=82.3
Q ss_pred hHHHHHHHhccCCCceeeecCCCcccCCcc--cccccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCC
Q 003090 223 TKIQYEIAGWLDLTGISLMFNDIHEVPDEL--ECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPF 300 (848)
Q Consensus 223 ~~l~~~i~~~~~l~~l~l~~n~l~~lp~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~ 300 (848)
.+....+.+...++..++++|.+..+|+.+ ..+.++.|++++|.+..+|.+ +..++.||.|+++.
T Consensus 43 ~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl~~------------ 109 (177)
T KOG4579|consen 43 ADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLNLRF------------ 109 (177)
T ss_pred HHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhccccc------------
Confidence 344455566666788999999999999887 667999999999999999999 68999999999999
Q ss_pred CCCCCCCCCCCCCCchhhhcccCcEEEccCccccCCc
Q 003090 301 LFPPLPSSPLFLLPSSLSFLINLRTLRLHDRRIQGDL 337 (848)
Q Consensus 301 ~~~~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~~ 337 (848)
|.+.. .|..+..|.+|-+|+..++.....+
T Consensus 110 --N~l~~-----~p~vi~~L~~l~~Lds~~na~~eid 139 (177)
T KOG4579|consen 110 --NPLNA-----EPRVIAPLIKLDMLDSPENARAEID 139 (177)
T ss_pred --Ccccc-----chHHHHHHHhHHHhcCCCCccccCc
Confidence 89988 8999999999999999999766655
No 66
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.16 E-value=0.00056 Score=66.22 Aligned_cols=48 Identities=15% Similarity=0.173 Sum_probs=28.0
Q ss_pred CchhHHHHHHHhccCCCceeeecCCCc-----ccCCcc-cccccceeecccCcC
Q 003090 220 PSITKIQYEIAGWLDLTGISLMFNDIH-----EVPDEL-ECPKLQALFLQENSP 267 (848)
Q Consensus 220 ~~~~~l~~~i~~~~~l~~l~l~~n~l~-----~lp~~~-~~~~L~~L~l~~~~~ 267 (848)
-|++.+...+...-.+..++||+|.|. .+...+ +-.+|+..+++.-+.
T Consensus 17 eDvk~v~eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ft 70 (388)
T COG5238 17 EDVKGVVEELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFT 70 (388)
T ss_pred chhhHHHHHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhh
Confidence 466667777766666777778877776 222222 345555555554433
No 67
>PTZ00202 tuzin; Provisional
Probab=97.00 E-value=0.014 Score=61.72 Aligned_cols=77 Identities=17% Similarity=0.214 Sum_probs=56.6
Q ss_pred cCCcccccccchhHHHHHHHHHHhcC--C-ccEEEEEeCCCCchhHHHHHHHHHHhhccccCcEEEEEeccCCchhHHHH
Q 003090 151 SSSEGVYAFKSRESTMKDIMEAMKDE--N-VSITGICGMGGVGKTTLVKEIQKQAKEMKMFDDVAMAVVSQTPSITKIQY 227 (848)
Q Consensus 151 ~~~~~~~~~vG~~~~~~~i~~~L~~~--~-~~vi~i~G~gG~GKTtla~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~ 227 (848)
..|.+...++||+++...+...|..- . ..++.|.|..|+||||+++.+..... ..+. +.+......+..
T Consensus 256 ~lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~------~~qL--~vNprg~eElLr 327 (550)
T PTZ00202 256 SAPAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG------MPAV--FVDVRGTEDTLR 327 (550)
T ss_pred CCCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC------ceEE--EECCCCHHHHHH
Confidence 34556789999999999999998632 2 24889999999999999999885432 1222 233336688888
Q ss_pred HHHhccCC
Q 003090 228 EIAGWLDL 235 (848)
Q Consensus 228 ~i~~~~~l 235 (848)
.++..++.
T Consensus 328 ~LL~ALGV 335 (550)
T PTZ00202 328 SVVKALGV 335 (550)
T ss_pred HHHHHcCC
Confidence 88887765
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.98 E-value=7.5e-05 Score=72.32 Aligned_cols=107 Identities=24% Similarity=0.247 Sum_probs=74.9
Q ss_pred hcccCcEEEccCccccCCchhhccccCCCEEEccCCCCcccChhhccCCcccEEeccCCccccccChhhhhccccccEEe
Q 003090 319 FLINLRTLRLHDRRIQGDLSLIGELSGLEILDLSESDVSEIPVSFGRLSHLRLLDLTGCYILELIPRGVLSRLRKLEELY 398 (848)
Q Consensus 319 ~l~~L~~L~L~~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~ 398 (848)
.+.+.+.|++.+| ...++....+++.|++|.|+-|+|+++. .+..+++|+.|+|+.|.+..--.-..+.++++|+.|+
T Consensus 17 dl~~vkKLNcwg~-~L~DIsic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 17 DLENVKKLNCWGC-GLDDISICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHHhhhhcccCC-CccHHHHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 3556777888888 4556677778889999999999888875 5788888999988887553322223367888888888
Q ss_pred ccccccccccccccccccCcccchhhhcccCCCcEEE
Q 003090 399 MSHSFRHWQFESESEEDSSSNAKFIELGALSRLTSLH 435 (848)
Q Consensus 399 l~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~ 435 (848)
+..|.-.+. ...+.....|.-|++|++||
T Consensus 95 L~ENPCc~~--------ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGE--------AGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccc--------cchhHHHHHHHHcccchhcc
Confidence 887754433 22233445677777777776
No 69
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.93 E-value=0.0042 Score=66.64 Aligned_cols=70 Identities=20% Similarity=0.177 Sum_probs=58.4
Q ss_pred cccccchhHHHHHHHHHHhcCCccEEEEEeCCCCchhHHHHHHHHHHhhccccCcEEEEEeccCCchhHHHH
Q 003090 156 VYAFKSRESTMKDIMEAMKDENVSITGICGMGGVGKTTLVKEIQKQAKEMKMFDDVAMAVVSQTPSITKIQY 227 (848)
Q Consensus 156 ~~~~vG~~~~~~~i~~~L~~~~~~vi~i~G~gG~GKTtla~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~ 227 (848)
..++++.++..+.++..|.... .+-++|+.|+|||++|+.+.+.......|+.+.||++++.++...+..
T Consensus 174 l~d~~i~e~~le~l~~~L~~~~--~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~ 243 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTIKK--NIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQ 243 (459)
T ss_pred hhcccCCHHHHHHHHHHHhcCC--CEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhc
Confidence 3568899999999999987544 577899999999999999998876667788999999998887766553
No 70
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.91 E-value=0.00033 Score=68.65 Aligned_cols=21 Identities=14% Similarity=0.140 Sum_probs=12.1
Q ss_pred chhhhcccCCCcEEEeeccCC
Q 003090 421 KFIELGALSRLTSLHIHIPEG 441 (848)
Q Consensus 421 ~~~~L~~l~~L~~L~l~~~~~ 441 (848)
...+|..++.|+.|.++.+.+
T Consensus 241 svD~Ln~f~~l~dlRv~~~Pl 261 (418)
T KOG2982|consen 241 SVDALNGFPQLVDLRVSENPL 261 (418)
T ss_pred HHHHHcCCchhheeeccCCcc
Confidence 455566666666666655543
No 71
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.85 E-value=0.0051 Score=59.82 Aligned_cols=143 Identities=22% Similarity=0.243 Sum_probs=77.7
Q ss_pred hHHHHHHHhccCCCceeeecCCCc-ccCCc----c-cccccceeecccCcCcccChH-----HH--------ccCCceeE
Q 003090 223 TKIQYEIAGWLDLTGISLMFNDIH-EVPDE----L-ECPKLQALFLQENSPLAIPDR-----FF--------QGMKDLQV 283 (848)
Q Consensus 223 ~~l~~~i~~~~~l~~l~l~~n~l~-~lp~~----~-~~~~L~~L~l~~~~~~~~~~~-----~~--------~~~~~Lr~ 283 (848)
.-+.+.++.+-.++.++||+|-|. ..|+. + +...|.+|.+++|..+.+... +| .+-+.|++
T Consensus 82 ~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~ 161 (388)
T COG5238 82 VMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEV 161 (388)
T ss_pred HHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceE
Confidence 345566667777888888888776 33432 2 567888888888866654321 11 23456777
Q ss_pred EEccCcccccccccCCCCCCCCCCCCCCCCCchhhhcccCcEEEccCccccCCc------hhhccccCCCEEEccCCCCc
Q 003090 284 LDLGGIRRFSFSVRFPFLFPPLPSSPLFLLPSSLSFLINLRTLRLHDRRIQGDL------SLIGELSGLEILDLSESDVS 357 (848)
Q Consensus 284 L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~~------~~i~~l~~L~~L~l~~~~l~ 357 (848)
..... |.+......-....+....+|+.+.+..|.+...- ..+..+++|++||+..|.++
T Consensus 162 vicgr--------------NRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft 227 (388)
T COG5238 162 VICGR--------------NRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT 227 (388)
T ss_pred EEecc--------------chhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence 77776 44443100001111223345666666666544321 33455666666666666555
Q ss_pred cc-----ChhhccCCcccEEeccCCcc
Q 003090 358 EI-----PVSFGRLSHLRLLDLTGCYI 379 (848)
Q Consensus 358 ~l-----p~~i~~L~~L~~L~l~~~~~ 379 (848)
.. ...+...+.|+.|.+.+|-.
T Consensus 228 ~~gS~~La~al~~W~~lrEL~lnDCll 254 (388)
T COG5238 228 LEGSRYLADALCEWNLLRELRLNDCLL 254 (388)
T ss_pred hhhHHHHHHHhcccchhhhccccchhh
Confidence 22 22233344456666665543
No 72
>PRK08118 topology modulation protein; Reviewed
Probab=96.67 E-value=0.0013 Score=62.00 Aligned_cols=50 Identities=22% Similarity=0.321 Sum_probs=36.1
Q ss_pred EEEEEeCCCCchhHHHHHHHHHHhhc-cccCcEE----EEEeccCCchhHHHHHHH
Q 003090 180 ITGICGMGGVGKTTLVKEIQKQAKEM-KMFDDVA----MAVVSQTPSITKIQYEIA 230 (848)
Q Consensus 180 vi~i~G~gG~GKTtla~~v~~~~~~~-~~F~~~~----wv~vs~~~~~~~l~~~i~ 230 (848)
.|.|+|.+|+||||+|+.+++..... -+||... |..+++. ....++++++
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~~w~~~~~~-~~~~~~~~~~ 57 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKPNWEGVPKE-EQITVQNELV 57 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcCCCHH-HHHHHHHHHh
Confidence 58899999999999999999987655 5577777 5555542 3444444444
No 73
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.52 E-value=0.0045 Score=65.29 Aligned_cols=52 Identities=17% Similarity=0.199 Sum_probs=45.4
Q ss_pred cEEEEEeCCCCchhHHHHHHHHHHhhccccCcEEEEEeccC--CchhHHHHHHHh
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQAKEMKMFDDVAMAVVSQT--PSITKIQYEIAG 231 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~l~~~i~~ 231 (848)
..+.|+|.+|.||||+++.+++..... +|+..+|+.+++. .++..+++.+..
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~~n-hfdv~v~VlLIgER~~EVtDLqrsIlg 222 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAITRN-HPEVELIVLLIDERPEEVTDMQRSVKG 222 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhccc-CCceEEEEEEcCCCCccHHHHHHHhhc
Confidence 568999999999999999999987644 8999999999977 788888888853
No 74
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.52 E-value=0.005 Score=59.43 Aligned_cols=48 Identities=21% Similarity=0.363 Sum_probs=34.0
Q ss_pred cccchhHHHHHHHHHHh---cCCccEEEEEeCCCCchhHHHHHHHHHHhhc
Q 003090 158 AFKSRESTMKDIMEAMK---DENVSITGICGMGGVGKTTLVKEIQKQAKEM 205 (848)
Q Consensus 158 ~~vG~~~~~~~i~~~L~---~~~~~vi~i~G~gG~GKTtla~~v~~~~~~~ 205 (848)
.+|||+++.+++...+. ....+.+-|+|..|+|||++.+.++......
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 37999999999999993 4556889999999999999999999877655
No 75
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=96.40 E-value=0.012 Score=64.64 Aligned_cols=79 Identities=23% Similarity=0.161 Sum_probs=54.4
Q ss_pred cccccchhHHHHHHHHHHh----cCCccEEEEEeCCCCchhHHHHHHHHHHhhccccCcEEEEEeccCCchhHHHHHHHh
Q 003090 156 VYAFKSRESTMKDIMEAMK----DENVSITGICGMGGVGKTTLVKEIQKQAKEMKMFDDVAMAVVSQTPSITKIQYEIAG 231 (848)
Q Consensus 156 ~~~~vG~~~~~~~i~~~L~----~~~~~vi~i~G~gG~GKTtla~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~ 231 (848)
...++||+++++++...+. ......+-|+|..|+|||++++.++++.......-..+++......+...+...+..
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~ 108 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIAR 108 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHH
Confidence 3679999999999999985 233355779999999999999999987654331122334433344455566666666
Q ss_pred ccC
Q 003090 232 WLD 234 (848)
Q Consensus 232 ~~~ 234 (848)
.+.
T Consensus 109 ~l~ 111 (394)
T PRK00411 109 QLF 111 (394)
T ss_pred Hhc
Confidence 553
No 76
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=96.20 E-value=0.006 Score=61.44 Aligned_cols=44 Identities=27% Similarity=0.406 Sum_probs=36.9
Q ss_pred ccchhHHHHHHHHHHhcCCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 159 FKSRESTMKDIMEAMKDENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 159 ~vG~~~~~~~i~~~L~~~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
++||+++.+.+.+++.......+.|+|..|+|||+|++.+.+..
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHh
Confidence 58999999999999987767899999999999999999998765
No 77
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=96.10 E-value=0.018 Score=62.45 Aligned_cols=77 Identities=21% Similarity=0.253 Sum_probs=53.3
Q ss_pred ccccchhHHHHHHHHHHhc----CCccEEEEEeCCCCchhHHHHHHHHHHhhc-cccC---cEEEEEeccCCchhHHHHH
Q 003090 157 YAFKSRESTMKDIMEAMKD----ENVSITGICGMGGVGKTTLVKEIQKQAKEM-KMFD---DVAMAVVSQTPSITKIQYE 228 (848)
Q Consensus 157 ~~~vG~~~~~~~i~~~L~~----~~~~vi~i~G~gG~GKTtla~~v~~~~~~~-~~F~---~~~wv~vs~~~~~~~l~~~ 228 (848)
+.++||+++++.+..++.. .....+-|+|..|+|||++++.+++..... ...+ ..+|+......+...+...
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~ 94 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVE 94 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHH
Confidence 5799999999999999872 333578899999999999999999865321 1111 2344443443445566666
Q ss_pred HHhcc
Q 003090 229 IAGWL 233 (848)
Q Consensus 229 i~~~~ 233 (848)
|.+.+
T Consensus 95 i~~~l 99 (365)
T TIGR02928 95 LANQL 99 (365)
T ss_pred HHHHH
Confidence 76655
No 78
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.90 E-value=0.006 Score=59.47 Aligned_cols=83 Identities=24% Similarity=0.342 Sum_probs=47.5
Q ss_pred cccCcEEEccCccccCCchhhccccCCCEEEccCC--CCc-ccChhhccCCcccEEeccCCccc--cccChhhhhccccc
Q 003090 320 LINLRTLRLHDRRIQGDLSLIGELSGLEILDLSES--DVS-EIPVSFGRLSHLRLLDLTGCYIL--ELIPRGVLSRLRKL 394 (848)
Q Consensus 320 l~~L~~L~L~~~~~~~~~~~i~~l~~L~~L~l~~~--~l~-~lp~~i~~L~~L~~L~l~~~~~~--~~~p~~~l~~l~~L 394 (848)
+..|+.|++.++.. .....+-.|++|++|.++.| ++. .++....++++|++|++++|.+. ..+++ +..+.+|
T Consensus 42 ~~~le~ls~~n~gl-tt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p--l~~l~nL 118 (260)
T KOG2739|consen 42 FVELELLSVINVGL-TTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP--LKELENL 118 (260)
T ss_pred ccchhhhhhhccce-eecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch--hhhhcch
Confidence 34455555554422 22344455667777777777 444 55555555677777777776443 33444 4666666
Q ss_pred cEEeccccccc
Q 003090 395 EELYMSHSFRH 405 (848)
Q Consensus 395 ~~L~l~~~~~~ 405 (848)
..|++..|..+
T Consensus 119 ~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 119 KSLDLFNCSVT 129 (260)
T ss_pred hhhhcccCCcc
Confidence 67776666544
No 79
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=95.87 E-value=0.03 Score=51.43 Aligned_cols=57 Identities=21% Similarity=0.170 Sum_probs=43.4
Q ss_pred cchhHHHHHHHHHHhcCCccEEEEEeCCCCchhHHHHHHHHHHhhccccCcEEEEEecc
Q 003090 160 KSRESTMKDIMEAMKDENVSITGICGMGGVGKTTLVKEIQKQAKEMKMFDDVAMAVVSQ 218 (848)
Q Consensus 160 vG~~~~~~~i~~~L~~~~~~vi~i~G~gG~GKTtla~~v~~~~~~~~~F~~~~wv~vs~ 218 (848)
+|++..++.+...+.......+-|+|..|+||||+++.+++..... -...+++...+
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~--~~~v~~~~~~~ 57 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRP--GAPFLYLNASD 57 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcC--CCCeEEEehhh
Confidence 4788888999988887667789999999999999999999876411 12345554444
No 80
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.31 E-value=0.011 Score=57.79 Aligned_cols=80 Identities=29% Similarity=0.414 Sum_probs=38.2
Q ss_pred hcccCcEEEccCc--cccCCc-hhhccccCCCEEEccCCCCc---ccChhhccCCcccEEeccCCcccc--ccChhhhhc
Q 003090 319 FLINLRTLRLHDR--RIQGDL-SLIGELSGLEILDLSESDVS---EIPVSFGRLSHLRLLDLTGCYILE--LIPRGVLSR 390 (848)
Q Consensus 319 ~l~~L~~L~L~~~--~~~~~~-~~i~~l~~L~~L~l~~~~l~---~lp~~i~~L~~L~~L~l~~~~~~~--~~p~~~l~~ 390 (848)
.|++|++|.++.| +..... ....++++|++|++++|++. +++ .+..+.+|..|++.+|.... .--..++.-
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~l 141 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKELENLKSLDLFNCSVTNLDDYREKVFLL 141 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-hhhhhcchhhhhcccCCccccccHHHHHHHH
Confidence 3445555555555 333222 22334455555555555544 222 24455555666665554332 111233556
Q ss_pred cccccEEec
Q 003090 391 LRKLEELYM 399 (848)
Q Consensus 391 l~~L~~L~l 399 (848)
+++|..|+-
T Consensus 142 l~~L~~LD~ 150 (260)
T KOG2739|consen 142 LPSLKYLDG 150 (260)
T ss_pred hhhhccccc
Confidence 666766653
No 81
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.29 E-value=0.0067 Score=34.93 Aligned_cols=21 Identities=48% Similarity=0.770 Sum_probs=12.9
Q ss_pred CCCEEEccCCCCcccChhhcc
Q 003090 345 GLEILDLSESDVSEIPVSFGR 365 (848)
Q Consensus 345 ~L~~L~l~~~~l~~lp~~i~~ 365 (848)
+|++||+++|+++.+|.++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 356666666666666665543
No 82
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.24 E-value=0.0038 Score=58.21 Aligned_cols=71 Identities=18% Similarity=0.252 Sum_probs=47.1
Q ss_pred ccccCCCccEEecccccccccccccccccccCCCcceEEEecCchhhHhhhHHHHHhhccCcEEEEeccCCce
Q 003090 557 LRVTLHKLEWLFIRENQNFVEICHGQLPAGCLSNVKRSDVVDCGSILKILLSHLVQSFQNLQRLRVYSCGLLV 629 (848)
Q Consensus 557 ~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~l~~~~~~~l~~L~~L~l~~c~~l~ 629 (848)
....+++++.|.+.+|..+.+|+.+.+.. ..|+|+.|+|++|+.+ ++---..+..+++|+.|.+++.+.+.
T Consensus 120 ~L~~l~~i~~l~l~~ck~~dD~~L~~l~~-~~~~L~~L~lsgC~rI-T~~GL~~L~~lknLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 120 HLRDLRSIKSLSLANCKYFDDWCLERLGG-LAPSLQDLDLSGCPRI-TDGGLACLLKLKNLRRLHLYDLPYVA 190 (221)
T ss_pred HHhccchhhhheeccccchhhHHHHHhcc-cccchheeeccCCCee-chhHHHHHHHhhhhHHHHhcCchhhh
Confidence 44556777777888888877777665554 5778888888888777 44333334566777777776655443
No 83
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=95.14 E-value=0.036 Score=57.99 Aligned_cols=47 Identities=26% Similarity=0.364 Sum_probs=40.9
Q ss_pred cccchhHHHHHHHHHHhc------CCccEEEEEeCCCCchhHHHHHHHHHHhh
Q 003090 158 AFKSRESTMKDIMEAMKD------ENVSITGICGMGGVGKTTLVKEIQKQAKE 204 (848)
Q Consensus 158 ~~vG~~~~~~~i~~~L~~------~~~~vi~i~G~gG~GKTtla~~v~~~~~~ 204 (848)
.++|.++.++++++++.. ....++.++|..|.||||+|+.+.+....
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 799999999999999973 23578999999999999999999887643
No 84
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=95.09 E-value=0.41 Score=55.28 Aligned_cols=62 Identities=23% Similarity=0.268 Sum_probs=48.2
Q ss_pred cccccchhHHHHHHHHHHhcCCccEEEEEeCCCCchhHHHHHHHHHHhhccccC---cEEEEEec
Q 003090 156 VYAFKSRESTMKDIMEAMKDENVSITGICGMGGVGKTTLVKEIQKQAKEMKMFD---DVAMAVVS 217 (848)
Q Consensus 156 ~~~~vG~~~~~~~i~~~L~~~~~~vi~i~G~gG~GKTtla~~v~~~~~~~~~F~---~~~wv~vs 217 (848)
-++++|.+..+..+...+.......+.++|..|+||||+|+.+++.......+. ...|+.+.
T Consensus 153 ~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~ 217 (615)
T TIGR02903 153 FSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVD 217 (615)
T ss_pred HHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEe
Confidence 357899999999888887666667899999999999999999998775444432 34566554
No 85
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=95.07 E-value=0.23 Score=55.71 Aligned_cols=47 Identities=30% Similarity=0.283 Sum_probs=39.8
Q ss_pred cccccchhHHHHHHHHHHh------cCCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 156 VYAFKSRESTMKDIMEAMK------DENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 156 ~~~~vG~~~~~~~i~~~L~------~~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
+.+-+|.++-++.|++.|- .-.-.++..||..|+|||.|++.|.+..
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al 374 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKAL 374 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHh
Confidence 3567899999999999986 2333699999999999999999998765
No 86
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.98 E-value=0.0026 Score=61.99 Aligned_cols=101 Identities=22% Similarity=0.177 Sum_probs=76.4
Q ss_pred cCCceeEEEccCcccccccccCCCCCCCCCCCCCCCCCchhhhcccCcEEEccCccccCCchhhccccCCCEEEccCCCC
Q 003090 277 GMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLPSSLSFLINLRTLRLHDRRIQGDLSLIGELSGLEILDLSESDV 356 (848)
Q Consensus 277 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~~i~~l~~L~~L~l~~~~l 356 (848)
.+.+.+.|++-+ +.+.+. ....+++.|++|.|+-|++ ..+..+..|++|+.|.|..|.|
T Consensus 17 dl~~vkKLNcwg--------------~~L~DI------sic~kMp~lEVLsLSvNkI-ssL~pl~rCtrLkElYLRkN~I 75 (388)
T KOG2123|consen 17 DLENVKKLNCWG--------------CGLDDI------SICEKMPLLEVLSLSVNKI-SSLAPLQRCTRLKELYLRKNCI 75 (388)
T ss_pred HHHHhhhhcccC--------------CCccHH------HHHHhcccceeEEeecccc-ccchhHHHHHHHHHHHHHhccc
Confidence 355667777777 566652 3456888999999999844 4556788899999999999988
Q ss_pred cccCh--hhccCCcccEEeccCCccccccCh----hhhhccccccEEe
Q 003090 357 SEIPV--SFGRLSHLRLLDLTGCYILELIPR----GVLSRLRKLEELY 398 (848)
Q Consensus 357 ~~lp~--~i~~L~~L~~L~l~~~~~~~~~p~----~~l~~l~~L~~L~ 398 (848)
..+-+ .+.++++|+.|.+..|.-.+.-+. .++.-|++|+.|+
T Consensus 76 ~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 76 ESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 86653 578899999999988766655543 3477888998886
No 87
>PRK07261 topology modulation protein; Provisional
Probab=94.65 E-value=0.068 Score=50.59 Aligned_cols=35 Identities=23% Similarity=0.377 Sum_probs=25.7
Q ss_pred EEEEEeCCCCchhHHHHHHHHHHhhc-cccCcEEEE
Q 003090 180 ITGICGMGGVGKTTLVKEIQKQAKEM-KMFDDVAMA 214 (848)
Q Consensus 180 vi~i~G~gG~GKTtla~~v~~~~~~~-~~F~~~~wv 214 (848)
.|.|+|++|+||||+|+.+.....+. -+.|...|-
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~ 37 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQ 37 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEec
Confidence 48899999999999999987654322 235555564
No 88
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=94.64 E-value=0.043 Score=57.82 Aligned_cols=47 Identities=23% Similarity=0.304 Sum_probs=38.9
Q ss_pred ccccchhHHHHHHHHHHh-----cCCccEEEEEeCCCCchhHHHHHHHHHHh
Q 003090 157 YAFKSRESTMKDIMEAMK-----DENVSITGICGMGGVGKTTLVKEIQKQAK 203 (848)
Q Consensus 157 ~~~vG~~~~~~~i~~~L~-----~~~~~vi~i~G~gG~GKTtla~~v~~~~~ 203 (848)
.+++|+++.++.+..++. ......+-++|..|+|||++|+.+.+...
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~ 55 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMG 55 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999888886 23345677999999999999999987653
No 89
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=94.60 E-value=0.034 Score=49.24 Aligned_cols=23 Identities=39% Similarity=0.567 Sum_probs=20.8
Q ss_pred EEEEEeCCCCchhHHHHHHHHHH
Q 003090 180 ITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 180 vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
+|.|+|..|+||||+|+.+.+..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998754
No 90
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.57 E-value=0.0062 Score=56.87 Aligned_cols=70 Identities=20% Similarity=0.341 Sum_probs=46.5
Q ss_pred CCCCCccEEEEecCCCCceecccchhhccccccEEEEecccccceeecCCcccccccCCCccceeccccccccccccccc
Q 003090 728 PSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVRSCPTLQEIIMDDEGEVGLQGASTKKITFPSLFGIKLCDLDSL 807 (848)
Q Consensus 728 ~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~~l~~~~~~~~~~~sL~~L~i~~cp~L 807 (848)
..+++++.|.+.+|..+.+......-+-.++|+.|+|++|+.+++- +.+.|-. +++|+.|.|.+.|..
T Consensus 122 ~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~-----GL~~L~~-------lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 122 RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDG-----GLACLLK-------LKNLRRLHLYDLPYV 189 (221)
T ss_pred hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechh-----HHHHHHH-------hhhhHHHHhcCchhh
Confidence 4567778888888887765532222234577888888888887543 3333333 688888888888766
Q ss_pred cc
Q 003090 808 AC 809 (848)
Q Consensus 808 ~~ 809 (848)
..
T Consensus 190 ~~ 191 (221)
T KOG3864|consen 190 AN 191 (221)
T ss_pred hc
Confidence 55
No 91
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.51 E-value=0.079 Score=47.45 Aligned_cols=117 Identities=16% Similarity=0.304 Sum_probs=42.2
Q ss_pred cccccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCCCCchhhhcccCcEEEccCcc
Q 003090 253 ECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLPSSLSFLINLRTLRLHDRR 332 (848)
Q Consensus 253 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp~~~~~l~~L~~L~L~~~~ 332 (848)
.+.+|+.+.+.. .+..++...|.++.+|+.+.+.. + +... -...+..+..|+.+.+..+
T Consensus 10 ~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~--------------~-~~~i----~~~~F~~~~~l~~i~~~~~- 68 (129)
T PF13306_consen 10 NCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPN--------------N-LTSI----GDNAFSNCKSLESITFPNN- 68 (129)
T ss_dssp T-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESS--------------T-TSCE-----TTTTTT-TT-EEEEETST-
T ss_pred CCCCCCEEEECC-CeeEeChhhcccccccccccccc--------------c-cccc----ceeeeeccccccccccccc-
Confidence 455666666553 34455555566666666666654 2 2221 1123455555666666442
Q ss_pred ccCCc-hhhccccCCCEEEccCCCCcccCh-hhccCCcccEEeccCCccccccChhhhhccccc
Q 003090 333 IQGDL-SLIGELSGLEILDLSESDVSEIPV-SFGRLSHLRLLDLTGCYILELIPRGVLSRLRKL 394 (848)
Q Consensus 333 ~~~~~-~~i~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~~l~~l~~L 394 (848)
..... ..+..+.+|+.+++..+ +..++. .+.+. +|+.+.+.. ....++...+.++++|
T Consensus 69 ~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~--~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 69 LKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS--NITKIEENAFKNCTKL 128 (129)
T ss_dssp T-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT--B-SS----GGG-----
T ss_pred ccccccccccccccccccccCcc-ccEEchhhhcCC-CceEEEECC--CccEECCccccccccC
Confidence 22222 34455566666666443 433332 23333 555555543 2233444434444443
No 92
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=94.43 E-value=0.092 Score=50.78 Aligned_cols=49 Identities=22% Similarity=0.298 Sum_probs=34.3
Q ss_pred ccccccchhHHHHHHHHHHh-----cCCccEEEEEeCCCCchhHHHHHHHHHHh
Q 003090 155 GVYAFKSRESTMKDIMEAMK-----DENVSITGICGMGGVGKTTLVKEIQKQAK 203 (848)
Q Consensus 155 ~~~~~vG~~~~~~~i~~~L~-----~~~~~vi~i~G~gG~GKTtla~~v~~~~~ 203 (848)
.-.+++|-++-++...-++. .+.+..+=.||..|+||||||+-|-+...
T Consensus 22 ~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~ 75 (233)
T PF05496_consen 22 SLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELG 75 (233)
T ss_dssp SCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT
T ss_pred CHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccC
Confidence 45789999888876544443 34567788999999999999999988764
No 93
>PRK06696 uridine kinase; Validated
Probab=94.03 E-value=0.09 Score=52.36 Aligned_cols=43 Identities=28% Similarity=0.376 Sum_probs=34.3
Q ss_pred chhHHHHHHHHHHh---cCCccEEEEEeCCCCchhHHHHHHHHHHh
Q 003090 161 SRESTMKDIMEAMK---DENVSITGICGMGGVGKTTLVKEIQKQAK 203 (848)
Q Consensus 161 G~~~~~~~i~~~L~---~~~~~vi~i~G~gG~GKTtla~~v~~~~~ 203 (848)
.|++-+++|.+.+. .....+|+|.|.+|.||||+|+.+.....
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~ 47 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIK 47 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35666777777775 45667999999999999999999987653
No 94
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=94.02 E-value=0.079 Score=54.03 Aligned_cols=56 Identities=21% Similarity=0.294 Sum_probs=38.3
Q ss_pred HHHHHhcCCccEEEEEeCCCCchhHHHHHHHHHHhhccccCcEEEEEecc----CCchhHHHHH
Q 003090 169 IMEAMKDENVSITGICGMGGVGKTTLVKEIQKQAKEMKMFDDVAMAVVSQ----TPSITKIQYE 228 (848)
Q Consensus 169 i~~~L~~~~~~vi~i~G~gG~GKTtla~~v~~~~~~~~~F~~~~wv~vs~----~~~~~~l~~~ 228 (848)
+.+++..+.+..+-.||..|+||||||+.+.+..+-... -+|..|- ..|+..+.++
T Consensus 153 lrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~Sy----rfvelSAt~a~t~dvR~ife~ 212 (554)
T KOG2028|consen 153 LRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHSY----RFVELSATNAKTNDVRDIFEQ 212 (554)
T ss_pred HHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCce----EEEEEeccccchHHHHHHHHH
Confidence 444555778888999999999999999999987654443 3444443 3444444443
No 95
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=93.89 E-value=0.08 Score=56.29 Aligned_cols=51 Identities=22% Similarity=0.312 Sum_probs=40.9
Q ss_pred CcccccccchhHHHHHHHHHHh-----cCCccEEEEEeCCCCchhHHHHHHHHHHh
Q 003090 153 SEGVYAFKSRESTMKDIMEAMK-----DENVSITGICGMGGVGKTTLVKEIQKQAK 203 (848)
Q Consensus 153 ~~~~~~~vG~~~~~~~i~~~L~-----~~~~~vi~i~G~gG~GKTtla~~v~~~~~ 203 (848)
|..-.+++|+++.++.+..++. ......+-++|..|+||||+|+.+.+...
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~ 76 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMG 76 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhC
Confidence 3345789999999998887775 23345678999999999999999988763
No 96
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=93.62 E-value=0.087 Score=47.30 Aligned_cols=58 Identities=29% Similarity=0.302 Sum_probs=41.5
Q ss_pred ccEEEEEeCCCCchhHHHHHHHHHHhhcc---ccCcEEEEEeccCCchhHHHHHHHhccCC
Q 003090 178 VSITGICGMGGVGKTTLVKEIQKQAKEMK---MFDDVAMAVVSQTPSITKIQYEIAGWLDL 235 (848)
Q Consensus 178 ~~vi~i~G~gG~GKTtla~~v~~~~~~~~---~F~~~~wv~vs~~~~~~~l~~~i~~~~~l 235 (848)
-+++-|+|..|+|||++++.+.+...... .-...+|+......+...+...+.+.+..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 64 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGL 64 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCc
Confidence 46789999999999999999997653210 12446788888877888999999887754
No 97
>PRK04195 replication factor C large subunit; Provisional
Probab=93.61 E-value=0.073 Score=59.81 Aligned_cols=52 Identities=17% Similarity=0.178 Sum_probs=43.6
Q ss_pred cCCcccccccchhHHHHHHHHHHhcCC----ccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 151 SSSEGVYAFKSRESTMKDIMEAMKDEN----VSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 151 ~~~~~~~~~vG~~~~~~~i~~~L~~~~----~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
+.|..-.+++|.++.++.+.+|+..+. ...+-++|..|+||||+|+.+.+..
T Consensus 8 yrP~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 8 YRPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred cCCCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 344455779999999999999998543 5788899999999999999998865
No 98
>PRK13342 recombination factor protein RarA; Reviewed
Probab=93.43 E-value=0.085 Score=58.02 Aligned_cols=47 Identities=21% Similarity=0.258 Sum_probs=38.6
Q ss_pred cccccchhHHHHH---HHHHHhcCCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 156 VYAFKSRESTMKD---IMEAMKDENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 156 ~~~~vG~~~~~~~---i~~~L~~~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
-.++||.+..+.. +.+++.......+-++|..|+||||+|+.+.+..
T Consensus 11 l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~ 60 (413)
T PRK13342 11 LDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT 60 (413)
T ss_pred HHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4568888877655 7777777777788899999999999999998765
No 99
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=93.43 E-value=0.25 Score=50.98 Aligned_cols=65 Identities=22% Similarity=0.256 Sum_probs=40.8
Q ss_pred HHHHHHHh---cCCccEEEEEeCCCCchhHHHHHHHHHHhhccccCcEEEEEeccCCchhHHHHHHHhccC
Q 003090 167 KDIMEAMK---DENVSITGICGMGGVGKTTLVKEIQKQAKEMKMFDDVAMAVVSQTPSITKIQYEIAGWLD 234 (848)
Q Consensus 167 ~~i~~~L~---~~~~~vi~i~G~gG~GKTtla~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~~~ 234 (848)
+.++..+. .....++.++|..|+||||+++.+++...... . ...|+. ....+...+...+....+
T Consensus 29 ~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~-~-~~~~~~-~~~~~~~~~l~~i~~~lG 96 (269)
T TIGR03015 29 KRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLDQER-V-VAAKLV-NTRVDAEDLLRMVAADFG 96 (269)
T ss_pred HHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcCCCC-e-EEeeee-CCCCCHHHHHHHHHHHcC
Confidence 34444443 34456899999999999999999998754221 1 122332 233566667777765553
No 100
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.33 E-value=0.052 Score=28.88 Aligned_cols=16 Identities=38% Similarity=0.719 Sum_probs=7.5
Q ss_pred CCCEEEccCCCCcccC
Q 003090 345 GLEILDLSESDVSEIP 360 (848)
Q Consensus 345 ~L~~L~l~~~~l~~lp 360 (848)
+|+.|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 5666666666666554
No 101
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=93.32 E-value=0.12 Score=57.25 Aligned_cols=45 Identities=22% Similarity=0.378 Sum_probs=39.9
Q ss_pred cccchhHHHHHHHHHHh------cCCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 158 AFKSRESTMKDIMEAMK------DENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 158 ~~vG~~~~~~~i~~~L~------~~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
+++|.++.++.|++.|. +..-.++-++|..|+||||||+.+.+-.
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHH
Confidence 58999999999999994 4556799999999999999999998754
No 102
>PRK07667 uridine kinase; Provisional
Probab=93.16 E-value=0.12 Score=50.16 Aligned_cols=38 Identities=37% Similarity=0.581 Sum_probs=29.5
Q ss_pred HHHHHHHHh--cCCccEEEEEeCCCCchhHHHHHHHHHHh
Q 003090 166 MKDIMEAMK--DENVSITGICGMGGVGKTTLVKEIQKQAK 203 (848)
Q Consensus 166 ~~~i~~~L~--~~~~~vi~i~G~gG~GKTtla~~v~~~~~ 203 (848)
.+.|.+.+. .....+|+|.|..|.||||+|+.+.....
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~ 42 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMK 42 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 455666665 34446999999999999999999987653
No 103
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=93.07 E-value=0.32 Score=51.64 Aligned_cols=51 Identities=18% Similarity=0.260 Sum_probs=43.1
Q ss_pred CCcccccccchhHHHHHHHHHHhcCCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 152 SSEGVYAFKSRESTMKDIMEAMKDENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 152 ~~~~~~~~vG~~~~~~~i~~~L~~~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
.|..-.+++|+++.++.+..++.......+-++|..|+||||+|+.+.+..
T Consensus 12 rP~~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l 62 (319)
T PRK00440 12 RPRTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALAREL 62 (319)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 344456789999999999999987777778999999999999999998765
No 104
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=92.96 E-value=0.15 Score=50.94 Aligned_cols=28 Identities=32% Similarity=0.523 Sum_probs=24.3
Q ss_pred CCccEEEEEeCCCCchhHHHHHHHHHHh
Q 003090 176 ENVSITGICGMGGVGKTTLVKEIQKQAK 203 (848)
Q Consensus 176 ~~~~vi~i~G~gG~GKTtla~~v~~~~~ 203 (848)
....+++|.|..|.||||+++.+.....
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~ 58 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQ 58 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 5567999999999999999999987654
No 105
>PLN03025 replication factor C subunit; Provisional
Probab=92.94 E-value=0.31 Score=51.52 Aligned_cols=52 Identities=17% Similarity=0.217 Sum_probs=42.3
Q ss_pred cCCcccccccchhHHHHHHHHHHhcCCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 151 SSSEGVYAFKSRESTMKDIMEAMKDENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 151 ~~~~~~~~~vG~~~~~~~i~~~L~~~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
+.|..-.+++|.++-++.+.+++...+...+=++|..|+||||+|+.+.+..
T Consensus 7 yrP~~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l 58 (319)
T PLN03025 7 YRPTKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHEL 58 (319)
T ss_pred cCCCCHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 3444557789999988888888777776677799999999999999988764
No 106
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=92.93 E-value=0.63 Score=52.23 Aligned_cols=47 Identities=26% Similarity=0.285 Sum_probs=40.5
Q ss_pred cccccchhHHHHHHHHHHh------cCCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 156 VYAFKSRESTMKDIMEAMK------DENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 156 ~~~~vG~~~~~~~i~~~L~------~~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
+++-+|+++-++.|++.+- +-+-.++..+|..|||||.+|+.|....
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~AL 462 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARAL 462 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHh
Confidence 4567899999999999986 3445799999999999999999998765
No 107
>CHL00095 clpC Clp protease ATP binding subunit
Probab=92.85 E-value=0.13 Score=61.87 Aligned_cols=46 Identities=17% Similarity=0.321 Sum_probs=39.6
Q ss_pred ccccchhHHHHHHHHHHhcCCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 157 YAFKSRESTMKDIMEAMKDENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 157 ~~~vG~~~~~~~i~~~L~~~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
..++||+++++.++++|......-+-++|..|+|||++|+.+....
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i 224 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRI 224 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999986555566799999999999999887654
No 108
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=92.84 E-value=3 Score=48.52 Aligned_cols=46 Identities=20% Similarity=0.338 Sum_probs=38.3
Q ss_pred ccccchhHHHHHHHHHHh---------cCCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 157 YAFKSRESTMKDIMEAMK---------DENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 157 ~~~vG~~~~~~~i~~~L~---------~~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
..|+|-|+.++.+.+.+. +..+.+.=.+|..|||||.||+.+-...
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~L 545 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEAL 545 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHh
Confidence 568999999999999887 3455677789999999999999887544
No 109
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=92.80 E-value=0.18 Score=48.30 Aligned_cols=73 Identities=19% Similarity=0.133 Sum_probs=51.4
Q ss_pred ccCCcccccccchhHHHHHHHHHHhcCCccEEEEEeCCCCchhHHHHHHHHHHhhccccCcEEEEEeccCCch
Q 003090 150 ISSSEGVYAFKSRESTMKDIMEAMKDENVSITGICGMGGVGKTTLVKEIQKQAKEMKMFDDVAMAVVSQTPSI 222 (848)
Q Consensus 150 ~~~~~~~~~~vG~~~~~~~i~~~L~~~~~~vi~i~G~gG~GKTtla~~v~~~~~~~~~F~~~~wv~vs~~~~~ 222 (848)
.+.|..-.++||-++.++.+--.-.+.+..-+-|-|+.|+||||-+..+.+..--...=+.+.-...|++-.+
T Consensus 20 KYrP~~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGI 92 (333)
T KOG0991|consen 20 KYRPSVLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGI 92 (333)
T ss_pred hhCchHHHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCcccccc
Confidence 3455566789999999988777777889999999999999999987777655432223333444444544333
No 110
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=92.66 E-value=0.1 Score=50.65 Aligned_cols=24 Identities=46% Similarity=0.681 Sum_probs=22.0
Q ss_pred EEEEEeCCCCchhHHHHHHHHHHh
Q 003090 180 ITGICGMGGVGKTTLVKEIQKQAK 203 (848)
Q Consensus 180 vi~i~G~gG~GKTtla~~v~~~~~ 203 (848)
||+|.|.+|+||||+|+.+.....
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 799999999999999999997764
No 111
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=92.55 E-value=0.28 Score=50.24 Aligned_cols=46 Identities=22% Similarity=0.142 Sum_probs=33.6
Q ss_pred ccccchhHHHHHHHHHHh---------------cCCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 157 YAFKSRESTMKDIMEAMK---------------DENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 157 ~~~vG~~~~~~~i~~~L~---------------~~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
..++|.++.++.+.+... ......+-++|..|.||||+|+.+.+..
T Consensus 6 ~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 6 SRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHH
Confidence 458899888876654422 1233456789999999999999998754
No 112
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=92.54 E-value=0.18 Score=54.02 Aligned_cols=51 Identities=16% Similarity=0.248 Sum_probs=42.3
Q ss_pred CCcccccccchhHHHHHHHHHHhcCCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 152 SSEGVYAFKSRESTMKDIMEAMKDENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 152 ~~~~~~~~vG~~~~~~~i~~~L~~~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
.|.....++|+++.++.+..++.......+-++|..|+||||+|+.+.+..
T Consensus 10 ~P~~~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l 60 (337)
T PRK12402 10 RPALLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALAREL 60 (337)
T ss_pred CCCcHHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 344456789999999999998887766677899999999999999988654
No 113
>PRK06547 hypothetical protein; Provisional
Probab=92.27 E-value=0.22 Score=47.05 Aligned_cols=35 Identities=26% Similarity=0.259 Sum_probs=27.8
Q ss_pred HHHHHHhcCCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 168 DIMEAMKDENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 168 ~i~~~L~~~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
.+...+......+|.|.|..|.||||+|+.+.+..
T Consensus 5 ~~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 5 LIAARLCGGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred HHHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34444556667899999999999999999998753
No 114
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.19 E-value=1.8 Score=47.96 Aligned_cols=25 Identities=24% Similarity=0.446 Sum_probs=21.2
Q ss_pred ccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 178 VSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 178 ~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
-.++.++|.+|+||||++..+....
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~l 374 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRF 374 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 4799999999999999988777543
No 115
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=92.11 E-value=1.8 Score=47.05 Aligned_cols=28 Identities=21% Similarity=0.315 Sum_probs=22.6
Q ss_pred CCccEEEEEeCCCCchhHHHHHHHHHHh
Q 003090 176 ENVSITGICGMGGVGKTTLVKEIQKQAK 203 (848)
Q Consensus 176 ~~~~vi~i~G~gG~GKTtla~~v~~~~~ 203 (848)
+...+|.++|..|+||||++..+.....
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~ 125 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQ 125 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3457999999999999999887765443
No 116
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=92.07 E-value=0.19 Score=60.20 Aligned_cols=47 Identities=17% Similarity=0.357 Sum_probs=40.6
Q ss_pred cccccchhHHHHHHHHHHhcCCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 156 VYAFKSRESTMKDIMEAMKDENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 156 ~~~~vG~~~~~~~i~~~L~~~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
-..++||++++..+++.|.......+-++|..|+||||+|+.+....
T Consensus 186 ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i 232 (852)
T TIGR03345 186 IDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRI 232 (852)
T ss_pred CCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHH
Confidence 35789999999999999986665666799999999999999988764
No 117
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=91.96 E-value=0.86 Score=45.67 Aligned_cols=58 Identities=7% Similarity=0.063 Sum_probs=49.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH-HhccccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 003090 37 HYIEALRTEAKKLTDRRNDLQAEIDAA-TRNREVIKDEVKSWIAEVNDIIPKAEKFLEDE 95 (848)
Q Consensus 37 ~~~~~~~~~l~~L~~~l~~i~~~l~~a-~~~~~~~~~~v~~wl~~lk~~~~d~eD~lde~ 95 (848)
+.+..++.+++.++.++++++.||+.. ++....+++ .+++..++...||++|-++|-.
T Consensus 314 dSlaflKnQiqvIQ~elesLqpFLk~V~ee~~nkh~~-~ed~a~~ii~kAyevEYVVDaC 372 (402)
T PF12061_consen 314 DSLAFLKNQIQVIQTELESLQPFLKHVVEEPHNKHDT-NEDCATQIIRKAYEVEYVVDAC 372 (402)
T ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHhccchhhhh-hhhHHHHHHHHHhheeeeeehh
Confidence 446789999999999999999999997 554455555 9999999999999999999965
No 118
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=91.87 E-value=0.15 Score=45.48 Aligned_cols=21 Identities=48% Similarity=0.841 Sum_probs=19.3
Q ss_pred EEEEeCCCCchhHHHHHHHHH
Q 003090 181 TGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 181 i~i~G~gG~GKTtla~~v~~~ 201 (848)
|.|.|..|+||||+|+.+.+.
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 679999999999999999876
No 119
>PTZ00301 uridine kinase; Provisional
Probab=91.85 E-value=0.23 Score=48.53 Aligned_cols=25 Identities=32% Similarity=0.621 Sum_probs=21.9
Q ss_pred ccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 178 VSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 178 ~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
..+|+|.|..|.||||+|+.+.+..
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHH
Confidence 3589999999999999999987654
No 120
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=91.75 E-value=1.5 Score=52.55 Aligned_cols=46 Identities=28% Similarity=0.294 Sum_probs=38.1
Q ss_pred ccccchhHHHHHHHHHHh------cCCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 157 YAFKSRESTMKDIMEAMK------DENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 157 ~~~vG~~~~~~~i~~~L~------~~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
..++|.++.++.|.+++. ...-.++-.+|..|+|||++|+.+.+..
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l 371 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL 371 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 458999999999998775 2233578899999999999999998765
No 121
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=91.75 E-value=0.34 Score=43.28 Aligned_cols=107 Identities=14% Similarity=0.261 Sum_probs=46.9
Q ss_pred cChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCCCCchhhhcccCcEEEccCccccCCc-hhhccccCCCE
Q 003090 270 IPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLPSSLSFLINLRTLRLHDRRIQGDL-SLIGELSGLEI 348 (848)
Q Consensus 270 ~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~~-~~i~~l~~L~~ 348 (848)
+++..|.++.+|+.+.+.. .+... -...|..+.+|+.+.+..+ ..... ..+.++.+|+.
T Consensus 3 i~~~~F~~~~~l~~i~~~~---------------~~~~I----~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~ 62 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN---------------TIKKI----GENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLES 62 (129)
T ss_dssp E-TTTTTT-TT--EEEETS---------------T--EE-----TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EE
T ss_pred ECHHHHhCCCCCCEEEECC---------------CeeEe----Chhhccccccccccccccc-ccccceeeeeccccccc
Confidence 4445566666777776654 12221 1234566666777776664 33322 45566666677
Q ss_pred EEccCCCCcccCh-hhccCCcccEEeccCCccccccChhhhhccccccEEecc
Q 003090 349 LDLSESDVSEIPV-SFGRLSHLRLLDLTGCYILELIPRGVLSRLRKLEELYMS 400 (848)
Q Consensus 349 L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~ 400 (848)
+.+.. .+..++. .+..+.+|+.+.+..+ ...++...+.+. +|+.+.+.
T Consensus 63 i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 63 ITFPN-NLKSIGDNAFSNCTNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp EEETS-TT-EE-TTTTTT-TTECEEEETTT---BEEHTTTTTT--T--EEE-T
T ss_pred ccccc-cccccccccccccccccccccCcc--ccEEchhhhcCC-CceEEEEC
Confidence 76654 4443433 3444666666666542 334444445555 66666554
No 122
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=91.71 E-value=0.36 Score=48.18 Aligned_cols=42 Identities=14% Similarity=0.213 Sum_probs=33.4
Q ss_pred hhHHHHHHHHHHhcCCccEEEEEeCCCCchhHHHHHHHHHHh
Q 003090 162 RESTMKDIMEAMKDENVSITGICGMGGVGKTTLVKEIQKQAK 203 (848)
Q Consensus 162 ~~~~~~~i~~~L~~~~~~vi~i~G~gG~GKTtla~~v~~~~~ 203 (848)
.+..++.+.+++..+....+-++|..|+|||++|+.+.+...
T Consensus 22 ~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~ 63 (226)
T TIGR03420 22 NAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAE 63 (226)
T ss_pred cHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 455666777776566667899999999999999999998754
No 123
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=91.69 E-value=0.23 Score=58.97 Aligned_cols=46 Identities=17% Similarity=0.292 Sum_probs=39.9
Q ss_pred ccccchhHHHHHHHHHHhcCCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 157 YAFKSRESTMKDIMEAMKDENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 157 ~~~vG~~~~~~~i~~~L~~~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
+.++||+++++.+++.|.......+-++|..|+|||++|+.+....
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~ 227 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRI 227 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999986655667799999999999999998765
No 124
>PRK05480 uridine/cytidine kinase; Provisional
Probab=91.66 E-value=0.17 Score=49.81 Aligned_cols=27 Identities=37% Similarity=0.528 Sum_probs=23.4
Q ss_pred CCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 176 ENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 176 ~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
....+|+|.|..|+|||||++.+....
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 455799999999999999999998754
No 125
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=91.58 E-value=0.81 Score=48.93 Aligned_cols=78 Identities=21% Similarity=0.180 Sum_probs=56.5
Q ss_pred ccccchhHHHHHHHHHHh----cCCccEEEEEeCCCCchhHHHHHHHHHHhhccccCcEEEEEeccCCchhHHHHHHHhc
Q 003090 157 YAFKSRESTMKDIMEAMK----DENVSITGICGMGGVGKTTLVKEIQKQAKEMKMFDDVAMAVVSQTPSITKIQYEIAGW 232 (848)
Q Consensus 157 ~~~vG~~~~~~~i~~~L~----~~~~~vi~i~G~gG~GKTtla~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~ 232 (848)
..+.+||++++++...|. .+....+-|+|..|.|||+.++.|.+..+....=...+.|.--.......+...|++.
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~ 96 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNK 96 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHH
Confidence 449999999999998886 3334458899999999999999999877544221114555444455667777888776
Q ss_pred cC
Q 003090 233 LD 234 (848)
Q Consensus 233 ~~ 234 (848)
+.
T Consensus 97 ~~ 98 (366)
T COG1474 97 LG 98 (366)
T ss_pred cC
Confidence 64
No 126
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=91.57 E-value=0.27 Score=52.07 Aligned_cols=52 Identities=13% Similarity=0.131 Sum_probs=42.2
Q ss_pred cCCcccccccchhHHHHHHHHHHhcCCc-cEEEEEeCCCCchhHHHHHHHHHH
Q 003090 151 SSSEGVYAFKSRESTMKDIMEAMKDENV-SITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 151 ~~~~~~~~~vG~~~~~~~i~~~L~~~~~-~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
+.|..-.+++|.++.++.+..++..... .++-++|..|+||||+|+.+++..
T Consensus 15 yrP~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~ 67 (316)
T PHA02544 15 YRPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV 67 (316)
T ss_pred cCCCcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 4444567899999999999999986554 455568999999999999998764
No 127
>CHL00181 cbbX CbbX; Provisional
Probab=91.46 E-value=0.5 Score=48.84 Aligned_cols=61 Identities=15% Similarity=0.134 Sum_probs=38.3
Q ss_pred ccccchhHHHHHHHHHHh---------c------CCccEEEEEeCCCCchhHHHHHHHHHHhhccccCcEEEEEec
Q 003090 157 YAFKSRESTMKDIMEAMK---------D------ENVSITGICGMGGVGKTTLVKEIQKQAKEMKMFDDVAMAVVS 217 (848)
Q Consensus 157 ~~~vG~~~~~~~i~~~L~---------~------~~~~vi~i~G~gG~GKTtla~~v~~~~~~~~~F~~~~wv~vs 217 (848)
.+++|.++-+++|.++.. . ..-..+-++|..|.||||+|+.+.........-....|+.++
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~ 98 (287)
T CHL00181 23 EELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVT 98 (287)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEec
Confidence 368888887776655432 0 112246789999999999999998754322222222355555
No 128
>PF13173 AAA_14: AAA domain
Probab=91.45 E-value=0.26 Score=44.01 Aligned_cols=38 Identities=29% Similarity=0.355 Sum_probs=28.0
Q ss_pred ccEEEEEeCCCCchhHHHHHHHHHHhhccccCcEEEEEecc
Q 003090 178 VSITGICGMGGVGKTTLVKEIQKQAKEMKMFDDVAMAVVSQ 218 (848)
Q Consensus 178 ~~vi~i~G~gG~GKTtla~~v~~~~~~~~~F~~~~wv~vs~ 218 (848)
-+++.|.|..|+||||+++.++.+.. .....+++...+
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~ 39 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDD 39 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCC
Confidence 46899999999999999999987653 223455555444
No 129
>PF05729 NACHT: NACHT domain
Probab=91.36 E-value=0.39 Score=45.01 Aligned_cols=40 Identities=23% Similarity=0.242 Sum_probs=29.3
Q ss_pred cEEEEEeCCCCchhHHHHHHHHHHhhcccc----CcEEEEEecc
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQAKEMKMF----DDVAMAVVSQ 218 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~~~~~~~F----~~~~wv~vs~ 218 (848)
+++-|.|.+|+||||+++.+.......... ....|.....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 44 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRD 44 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehh
Confidence 478899999999999999999877655443 3445555444
No 130
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=91.36 E-value=0.16 Score=49.88 Aligned_cols=25 Identities=44% Similarity=0.555 Sum_probs=22.2
Q ss_pred ccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 178 VSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 178 ~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
-.+|+|+|..|.||||+++.+....
T Consensus 6 g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 6 GIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998754
No 131
>PRK10865 protein disaggregation chaperone; Provisional
Probab=91.31 E-value=0.23 Score=59.70 Aligned_cols=47 Identities=17% Similarity=0.362 Sum_probs=39.9
Q ss_pred cccccchhHHHHHHHHHHhcCCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 156 VYAFKSRESTMKDIMEAMKDENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 156 ~~~~vG~~~~~~~i~~~L~~~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
-..++||+.++..+++.|.......+-++|..|+|||++|+.+-...
T Consensus 177 l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i 223 (857)
T PRK10865 177 LDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 223 (857)
T ss_pred CCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHh
Confidence 35699999999999999986655566699999999999999887654
No 132
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.21 E-value=0.28 Score=54.95 Aligned_cols=51 Identities=20% Similarity=0.218 Sum_probs=41.9
Q ss_pred CcccccccchhHHHHHHHHHHhcCCccE-EEEEeCCCCchhHHHHHHHHHHh
Q 003090 153 SEGVYAFKSRESTMKDIMEAMKDENVSI-TGICGMGGVGKTTLVKEIQKQAK 203 (848)
Q Consensus 153 ~~~~~~~vG~~~~~~~i~~~L~~~~~~v-i~i~G~gG~GKTtla~~v~~~~~ 203 (848)
|..-.+++|-+.-++.+..++..+.... +-++|..|+||||+|+.+.+...
T Consensus 10 P~~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~ 61 (504)
T PRK14963 10 PITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVN 61 (504)
T ss_pred CCCHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4445679999999999988888776654 48999999999999999987764
No 133
>PHA00729 NTP-binding motif containing protein
Probab=91.18 E-value=0.31 Score=47.66 Aligned_cols=36 Identities=28% Similarity=0.410 Sum_probs=28.9
Q ss_pred HHHHHHHhcCCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 167 KDIMEAMKDENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 167 ~~i~~~L~~~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
..+++.+...+...+.|.|..|+||||+|..+-+..
T Consensus 6 k~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 6 KKIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred HHHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 345666666666788999999999999999998764
No 134
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=91.07 E-value=0.24 Score=44.83 Aligned_cols=28 Identities=43% Similarity=0.452 Sum_probs=23.8
Q ss_pred cEEEEEeCCCCchhHHHHHHHHHHhhcc
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQAKEMK 206 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~~~~~~ 206 (848)
--|.|.||.|+||||+++.+-+..+.+.
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g 33 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKG 33 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcC
Confidence 3588999999999999999998776544
No 135
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=90.98 E-value=0.92 Score=52.84 Aligned_cols=78 Identities=18% Similarity=0.204 Sum_probs=50.9
Q ss_pred cccccchhHHHHHHHHHHh----cC-CccEEEEEeCCCCchhHHHHHHHHHHhh---ccccCcEEEEEec--cCCchhHH
Q 003090 156 VYAFKSRESTMKDIMEAMK----DE-NVSITGICGMGGVGKTTLVKEIQKQAKE---MKMFDDVAMAVVS--QTPSITKI 225 (848)
Q Consensus 156 ~~~~vG~~~~~~~i~~~L~----~~-~~~vi~i~G~gG~GKTtla~~v~~~~~~---~~~F~~~~wv~vs--~~~~~~~l 225 (848)
++.++|||+++++|...|. .. ...++-|+|..|.|||+.++.|.+.... ....+....+.|. .-.+...+
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sI 833 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAA 833 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHH
Confidence 3578999999999999887 22 2246789999999999999999876532 1122223333332 22344555
Q ss_pred HHHHHhcc
Q 003090 226 QYEIAGWL 233 (848)
Q Consensus 226 ~~~i~~~~ 233 (848)
...|.+.+
T Consensus 834 YqvI~qqL 841 (1164)
T PTZ00112 834 YQVLYKQL 841 (1164)
T ss_pred HHHHHHHH
Confidence 55565444
No 136
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=90.88 E-value=0.47 Score=41.39 Aligned_cols=45 Identities=16% Similarity=0.265 Sum_probs=35.4
Q ss_pred ccccchhHHHHHHHHHHh-------cCCccEEEEEeCCCCchhHHHHHHHHH
Q 003090 157 YAFKSRESTMKDIMEAMK-------DENVSITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 157 ~~~vG~~~~~~~i~~~L~-------~~~~~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
..++|-.-..+.|++.+. ....-|++..|+.|+|||..++.|-+.
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 568888888888888876 234569999999999999977666554
No 137
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=90.87 E-value=0.22 Score=38.71 Aligned_cols=23 Identities=39% Similarity=0.608 Sum_probs=20.1
Q ss_pred EEEEEeCCCCchhHHHHHHHHHH
Q 003090 180 ITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 180 vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
++.|.|..|.||||+++.+-+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999888763
No 138
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=90.83 E-value=0.32 Score=56.82 Aligned_cols=48 Identities=27% Similarity=0.373 Sum_probs=38.2
Q ss_pred ccccccchhHHHH---HHHHHHhcCCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 155 GVYAFKSRESTMK---DIMEAMKDENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 155 ~~~~~vG~~~~~~---~i~~~L~~~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
.-++++|.+..+. .+.+.+.......+-++|..|+||||+|+.+.+..
T Consensus 26 tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~ 76 (725)
T PRK13341 26 TLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHT 76 (725)
T ss_pred cHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3467889888774 45556667777788899999999999999999765
No 139
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=90.81 E-value=0.61 Score=48.85 Aligned_cols=46 Identities=24% Similarity=0.288 Sum_probs=33.1
Q ss_pred ccccchhHHH---HHHHHHHhcCCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 157 YAFKSRESTM---KDIMEAMKDENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 157 ~~~vG~~~~~---~~i~~~L~~~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
.++||-+.-+ .-+-.++....+...-.||..|+||||+|+.|-...
T Consensus 24 de~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~ 72 (436)
T COG2256 24 DEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTT 72 (436)
T ss_pred HHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhh
Confidence 4555554433 233445556788888899999999999999998754
No 140
>PRK08233 hypothetical protein; Provisional
Probab=90.80 E-value=0.2 Score=48.01 Aligned_cols=25 Identities=32% Similarity=0.492 Sum_probs=21.7
Q ss_pred ccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 178 VSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 178 ~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
..+|+|.|..|.||||+|+.+....
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 3689999999999999999998653
No 141
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.48 E-value=0.019 Score=54.72 Aligned_cols=86 Identities=20% Similarity=0.143 Sum_probs=63.0
Q ss_pred ccCCceeEEEccCcccccccccCCCCCCCCCCCCCCCCCchhhhcccCcEEEccCccccCCchhhccccCCCEEEccCCC
Q 003090 276 QGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLPSSLSFLINLRTLRLHDRRIQGDLSLIGELSGLEILDLSESD 355 (848)
Q Consensus 276 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~~i~~l~~L~~L~l~~~~ 355 (848)
..++...+||++. +.+-. +-..++.++.|..|+++.+.+...+..++.+..++.+++..|.
T Consensus 39 ~~~kr~tvld~~s--------------~r~vn-----~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~ 99 (326)
T KOG0473|consen 39 ASFKRVTVLDLSS--------------NRLVN-----LGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNN 99 (326)
T ss_pred hccceeeeehhhh--------------hHHHh-----hccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccc
Confidence 4566777777777 55555 5566777777777777777776677777777777777777777
Q ss_pred CcccChhhccCCcccEEeccCCccc
Q 003090 356 VSEIPVSFGRLSHLRLLDLTGCYIL 380 (848)
Q Consensus 356 l~~lp~~i~~L~~L~~L~l~~~~~~ 380 (848)
.+..|.+.+++++++++++.++.+.
T Consensus 100 ~~~~p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 100 HSQQPKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred hhhCCccccccCCcchhhhccCcch
Confidence 7888888888888888877776543
No 142
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=90.38 E-value=0.38 Score=51.94 Aligned_cols=48 Identities=25% Similarity=0.316 Sum_probs=38.6
Q ss_pred ccccccchhHHHHHHHHHHh----c---------CCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 155 GVYAFKSRESTMKDIMEAMK----D---------ENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 155 ~~~~~vG~~~~~~~i~~~L~----~---------~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
...++.|+++.++++.+.+. . ....-+-++|..|+|||++|+++.+..
T Consensus 120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l 180 (364)
T TIGR01242 120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET 180 (364)
T ss_pred CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhC
Confidence 34679999999999988774 1 123458899999999999999998865
No 143
>PRK06762 hypothetical protein; Provisional
Probab=90.35 E-value=0.25 Score=46.56 Aligned_cols=24 Identities=38% Similarity=0.570 Sum_probs=21.3
Q ss_pred cEEEEEeCCCCchhHHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
.+|.|+|+.|+||||+|+.+.+..
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999998654
No 144
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=90.27 E-value=0.35 Score=43.83 Aligned_cols=39 Identities=18% Similarity=0.330 Sum_probs=26.9
Q ss_pred cEEEEEeCCCCchhHHHHHHHHHHhhccccCcEEEEEecc
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQAKEMKMFDDVAMAVVSQ 218 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~~~~~~~F~~~~wv~vs~ 218 (848)
++|.|||..|+||||+++.+.+...-+ .+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~-g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRR-GYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHc-CCceEEEEEccC
Confidence 479999999999999999999887533 334444444444
No 145
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=90.19 E-value=0.52 Score=46.90 Aligned_cols=51 Identities=24% Similarity=0.266 Sum_probs=40.2
Q ss_pred ccccccchhHHHHHHHHHHh-----cCCccEEEEEeCCCCchhHHHHHHHHHHhhc
Q 003090 155 GVYAFKSRESTMKDIMEAMK-----DENVSITGICGMGGVGKTTLVKEIQKQAKEM 205 (848)
Q Consensus 155 ~~~~~vG~~~~~~~i~~~L~-----~~~~~vi~i~G~gG~GKTtla~~v~~~~~~~ 205 (848)
.-.+++|-++-++++-=.+. ...+.-+=++|..|.||||||.-|-+.-.+.
T Consensus 24 ~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn 79 (332)
T COG2255 24 TLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVN 79 (332)
T ss_pred cHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCC
Confidence 34678999888877665555 4556778899999999999999999876443
No 146
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=89.99 E-value=0.54 Score=44.19 Aligned_cols=43 Identities=26% Similarity=0.463 Sum_probs=33.1
Q ss_pred ccchhHHHHHHHHHHh---cCCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 159 FKSRESTMKDIMEAMK---DENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 159 ~vG~~~~~~~i~~~L~---~~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
++|.+..+.++++.+. ..+.+|+ |+|-.|.||+.+|+.|++..
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVl-I~GE~GtGK~~lA~~IH~~s 46 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVL-ITGETGTGKELLARAIHNNS 46 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EE-EECSTTSSHHHHHHHHHHCS
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEE-EEcCCCCcHHHHHHHHHHhh
Confidence 5788888988888877 4555544 99999999999999999844
No 147
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=89.79 E-value=0.43 Score=57.64 Aligned_cols=46 Identities=17% Similarity=0.347 Sum_probs=39.0
Q ss_pred ccccchhHHHHHHHHHHhcCCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 157 YAFKSRESTMKDIMEAMKDENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 157 ~~~vG~~~~~~~i~~~L~~~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
..++||+.++..+++.|....-..+-++|..|+|||++|+.+....
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i 218 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRI 218 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 5699999999999999986555556689999999999999887654
No 148
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=89.71 E-value=0.37 Score=44.46 Aligned_cols=29 Identities=34% Similarity=0.560 Sum_probs=24.3
Q ss_pred ccEEEEEeCCCCchhHHHHHHHHHHhhcc
Q 003090 178 VSITGICGMGGVGKTTLVKEIQKQAKEMK 206 (848)
Q Consensus 178 ~~vi~i~G~gG~GKTtla~~v~~~~~~~~ 206 (848)
..|++|+|+.|.|||||...+-...+.+.
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G 30 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARG 30 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCC
Confidence 36899999999999999999887665443
No 149
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=89.69 E-value=0.84 Score=53.74 Aligned_cols=46 Identities=17% Similarity=0.289 Sum_probs=38.2
Q ss_pred ccccchhHHHHHHHHHHhcCCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 157 YAFKSRESTMKDIMEAMKDENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 157 ~~~vG~~~~~~~i~~~L~~~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
..++||++++..+++.|....-..+-++|..|+|||++|+.+....
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i 231 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 4699999999999998885433445589999999999999998654
No 150
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=89.65 E-value=0.99 Score=46.94 Aligned_cols=74 Identities=19% Similarity=0.226 Sum_probs=61.4
Q ss_pred cccccchhHHHHHHHHHHhcCCc---cEEEEEeCCCCchhHHHHHHHHHHhhccccCcEEEEEeccCCchhHHHHHHHhc
Q 003090 156 VYAFKSRESTMKDIMEAMKDENV---SITGICGMGGVGKTTLVKEIQKQAKEMKMFDDVAMAVVSQTPSITKIQYEIAGW 232 (848)
Q Consensus 156 ~~~~vG~~~~~~~i~~~L~~~~~---~vi~i~G~gG~GKTtla~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~ 232 (848)
+..+.+|+..+..+..++.+.+. ++|-|+|-.|.|||.+.+.+++... -..+|++.-..|....+...|+..
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n-----~~~vw~n~~ecft~~~lle~IL~~ 79 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLN-----LENVWLNCVECFTYAILLEKILNK 79 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcC-----CcceeeehHHhccHHHHHHHHHHH
Confidence 46788999999999888875443 3457899999999999999998762 346899999999999999999887
Q ss_pred cC
Q 003090 233 LD 234 (848)
Q Consensus 233 ~~ 234 (848)
..
T Consensus 80 ~~ 81 (438)
T KOG2543|consen 80 SQ 81 (438)
T ss_pred hc
Confidence 74
No 151
>PRK10865 protein disaggregation chaperone; Provisional
Probab=89.63 E-value=6.2 Score=47.73 Aligned_cols=46 Identities=20% Similarity=0.276 Sum_probs=37.1
Q ss_pred ccccchhHHHHHHHHHHhc---------CCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 157 YAFKSRESTMKDIMEAMKD---------ENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 157 ~~~vG~~~~~~~i~~~L~~---------~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
..++|-+..++.+...+.. ....++-++|..|+|||++|+.+.+..
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l 622 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM 622 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4688999999888888761 123578899999999999999998654
No 152
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=89.51 E-value=0.3 Score=46.50 Aligned_cols=26 Identities=31% Similarity=0.438 Sum_probs=23.0
Q ss_pred ccEEEEEeCCCCchhHHHHHHHHHHh
Q 003090 178 VSITGICGMGGVGKTTLVKEIQKQAK 203 (848)
Q Consensus 178 ~~vi~i~G~gG~GKTtla~~v~~~~~ 203 (848)
..+|.|-||=|+||||||+.+-++..
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 36899999999999999999987764
No 153
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=89.31 E-value=0.26 Score=48.76 Aligned_cols=24 Identities=38% Similarity=0.502 Sum_probs=21.2
Q ss_pred EEEEEeCCCCchhHHHHHHHHHHh
Q 003090 180 ITGICGMGGVGKTTLVKEIQKQAK 203 (848)
Q Consensus 180 vi~i~G~gG~GKTtla~~v~~~~~ 203 (848)
+|+|.|..|.||||+|+.+.....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999987653
No 154
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=89.23 E-value=0.35 Score=46.73 Aligned_cols=27 Identities=48% Similarity=0.668 Sum_probs=23.1
Q ss_pred CccEEEEEeCCCCchhHHHHHHHHHHh
Q 003090 177 NVSITGICGMGGVGKTTLVKEIQKQAK 203 (848)
Q Consensus 177 ~~~vi~i~G~gG~GKTtla~~v~~~~~ 203 (848)
.+-+|+|.|-+|.||||+|+.+++...
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~ 33 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLG 33 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 346899999999999999999987653
No 155
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=89.22 E-value=0.39 Score=43.84 Aligned_cols=23 Identities=39% Similarity=0.693 Sum_probs=19.7
Q ss_pred EEEEEeCCCCchhHHHHHHHHHH
Q 003090 180 ITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 180 vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
+|-++|+.|+||||+|+.+....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 57789999999999999987543
No 156
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=89.20 E-value=11 Score=40.41 Aligned_cols=25 Identities=28% Similarity=0.428 Sum_probs=21.5
Q ss_pred ccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 178 VSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 178 ~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
-.++.++|..|+||||++..+-...
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3689999999999999998887654
No 157
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=89.14 E-value=0.55 Score=46.21 Aligned_cols=30 Identities=30% Similarity=0.468 Sum_probs=24.8
Q ss_pred ccEEEEEeCCCCchhHHHHHHHHHHhhccc
Q 003090 178 VSITGICGMGGVGKTTLVKEIQKQAKEMKM 207 (848)
Q Consensus 178 ~~vi~i~G~gG~GKTtla~~v~~~~~~~~~ 207 (848)
...|-++||.|.||||..|.++.+...++.
T Consensus 19 p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ 48 (366)
T KOG1532|consen 19 PVIILVVGMAGSGKTTFMQRLNSHLHAKKT 48 (366)
T ss_pred CcEEEEEecCCCCchhHHHHHHHHHhhccC
Confidence 356788999999999999999988765544
No 158
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.99 E-value=0.63 Score=51.70 Aligned_cols=50 Identities=24% Similarity=0.323 Sum_probs=40.0
Q ss_pred CcccccccchhHHHHHHHHHHhcCCcc-EEEEEeCCCCchhHHHHHHHHHH
Q 003090 153 SEGVYAFKSRESTMKDIMEAMKDENVS-ITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 153 ~~~~~~~vG~~~~~~~i~~~L~~~~~~-vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
|..-.+++|.+.-++.+...+....+. .+=++|..|+||||+|+.+.+..
T Consensus 10 P~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l 60 (472)
T PRK14962 10 PKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSL 60 (472)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 334577999998888888877777664 46789999999999999997654
No 159
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=88.95 E-value=1.2 Score=46.17 Aligned_cols=61 Identities=15% Similarity=0.144 Sum_probs=37.4
Q ss_pred ccccchhHHHHHHHHHHh---------cCCc------cEEEEEeCCCCchhHHHHHHHHHHhhccccCcEEEEEec
Q 003090 157 YAFKSRESTMKDIMEAMK---------DENV------SITGICGMGGVGKTTLVKEIQKQAKEMKMFDDVAMAVVS 217 (848)
Q Consensus 157 ~~~vG~~~~~~~i~~~L~---------~~~~------~vi~i~G~gG~GKTtla~~v~~~~~~~~~F~~~~wv~vs 217 (848)
..++|.++.++.+.++.. ..++ .-+-++|..|.||||+|+.+..............++.++
T Consensus 22 ~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~ 97 (284)
T TIGR02880 22 RELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVT 97 (284)
T ss_pred HhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEec
Confidence 357888888877655432 1111 246689999999999998877654322222222355444
No 160
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=88.87 E-value=0.3 Score=47.57 Aligned_cols=23 Identities=52% Similarity=0.723 Sum_probs=20.3
Q ss_pred EEEEEeCCCCchhHHHHHHHHHH
Q 003090 180 ITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 180 vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
+|+|.|..|+||||+++.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999987653
No 161
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=88.86 E-value=0.55 Score=51.09 Aligned_cols=48 Identities=23% Similarity=0.300 Sum_probs=38.4
Q ss_pred ccccccchhHHHHHHHHHHh----c---------CCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 155 GVYAFKSRESTMKDIMEAMK----D---------ENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 155 ~~~~~vG~~~~~~~i~~~L~----~---------~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
....+.|+++.++++.+.+. . ...+-|-++|..|.|||++|+++.+..
T Consensus 129 ~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~ 189 (389)
T PRK03992 129 TYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET 189 (389)
T ss_pred CHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh
Confidence 34578999999999888764 1 233557889999999999999998765
No 162
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=88.85 E-value=0.33 Score=46.39 Aligned_cols=22 Identities=50% Similarity=0.709 Sum_probs=20.0
Q ss_pred EEEEEeCCCCchhHHHHHHHHH
Q 003090 180 ITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 180 vi~i~G~gG~GKTtla~~v~~~ 201 (848)
+|+|.|..|.||||+|+.+...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999865
No 163
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=88.75 E-value=0.49 Score=48.63 Aligned_cols=27 Identities=30% Similarity=0.294 Sum_probs=22.4
Q ss_pred CCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 176 ENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 176 ~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
....+|+|.|..|+||||+|+.+....
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll 86 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALL 86 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 445799999999999999998776543
No 164
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.71 E-value=0.73 Score=49.66 Aligned_cols=49 Identities=18% Similarity=0.241 Sum_probs=40.4
Q ss_pred cccccccchhHHHHHHHHHHhcCCcc-EEEEEeCCCCchhHHHHHHHHHH
Q 003090 154 EGVYAFKSRESTMKDIMEAMKDENVS-ITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 154 ~~~~~~vG~~~~~~~i~~~L~~~~~~-vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
..-.+++|-+..++.+.+.+....+. .+-++|..|+||||+|+.+.+..
T Consensus 13 ~~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l 62 (363)
T PRK14961 13 QYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSL 62 (363)
T ss_pred CchhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHh
Confidence 34567999999999998888866654 45799999999999999988654
No 165
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.57 E-value=0.024 Score=54.00 Aligned_cols=88 Identities=15% Similarity=0.076 Sum_probs=57.5
Q ss_pred HHHHhccCCCceeeecCCCcccCCcc-cccccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCC
Q 003090 227 YEIAGWLDLTGISLMFNDIHEVPDEL-ECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPL 305 (848)
Q Consensus 227 ~~i~~~~~l~~l~l~~n~l~~lp~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l 305 (848)
.+|..-...+.||++.|++..+...+ -+..+..|+++.|.+..+|.++ +....++.+++.. |..
T Consensus 36 ~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~-~q~~e~~~~~~~~--------------n~~ 100 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDA-KQQRETVNAASHK--------------NNH 100 (326)
T ss_pred hhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhH-HHHHHHHHHHhhc--------------cch
Confidence 34444444566777777776666555 5566777777777777777663 5666666677666 566
Q ss_pred CCCCCCCCCchhhhcccCcEEEccCcccc
Q 003090 306 PSSPLFLLPSSLSFLINLRTLRLHDRRIQ 334 (848)
Q Consensus 306 ~~~~~~~lp~~~~~l~~L~~L~L~~~~~~ 334 (848)
+. .|.+++.+++++++++.++.+.
T Consensus 101 ~~-----~p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 101 SQ-----QPKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred hh-----CCccccccCCcchhhhccCcch
Confidence 65 7777777777777777776533
No 166
>PRK03839 putative kinase; Provisional
Probab=88.54 E-value=0.4 Score=45.89 Aligned_cols=23 Identities=43% Similarity=0.608 Sum_probs=20.7
Q ss_pred EEEEEeCCCCchhHHHHHHHHHH
Q 003090 180 ITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 180 vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
.|.++|+.|+||||+++.+.+..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998765
No 167
>COG1084 Predicted GTPase [General function prediction only]
Probab=88.53 E-value=8.4 Score=39.58 Aligned_cols=52 Identities=13% Similarity=0.269 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHH
Q 003090 39 IEALRTEAKKLTDRRNDLQAEIDAATRNREVIKDEVKSWIAEVNDIIPKAEKF 91 (848)
Q Consensus 39 ~~~~~~~l~~L~~~l~~i~~~l~~a~~~~~~~~~~v~~wl~~lk~~~~d~eD~ 91 (848)
.+.-.-+..+++..-+.+...++..-++ .-.=+.+--+-.++-|+.||++++
T Consensus 41 ~kar~~e~~rv~t~~~i~~d~l~~iv~~-~P~id~LhpFY~eLidvl~d~d~~ 92 (346)
T COG1084 41 VKAREFEIRRVKTASNIVRDRLDKIVER-FPSLDDLHPFYRELIDVLVDIDHL 92 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCccccChHHHHHHHHHhCHHHH
Confidence 4444455677777777788888766544 333345556777888888887665
No 168
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=88.52 E-value=0.43 Score=46.03 Aligned_cols=25 Identities=32% Similarity=0.367 Sum_probs=22.1
Q ss_pred CccEEEEEeCCCCchhHHHHHHHHH
Q 003090 177 NVSITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 177 ~~~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
+..+|.|+|..|+||||+|+.+...
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~ 26 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEK 26 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999988754
No 169
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=88.49 E-value=0.5 Score=44.27 Aligned_cols=27 Identities=30% Similarity=0.438 Sum_probs=23.4
Q ss_pred CccEEEEEeCCCCchhHHHHHHHHHHh
Q 003090 177 NVSITGICGMGGVGKTTLVKEIQKQAK 203 (848)
Q Consensus 177 ~~~vi~i~G~gG~GKTtla~~v~~~~~ 203 (848)
...+++|+|..|.|||||++.+.....
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~ 31 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALC 31 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHh
Confidence 456899999999999999999987654
No 170
>PRK05541 adenylylsulfate kinase; Provisional
Probab=88.43 E-value=0.69 Score=44.05 Aligned_cols=27 Identities=37% Similarity=0.529 Sum_probs=23.3
Q ss_pred CccEEEEEeCCCCchhHHHHHHHHHHh
Q 003090 177 NVSITGICGMGGVGKTTLVKEIQKQAK 203 (848)
Q Consensus 177 ~~~vi~i~G~gG~GKTtla~~v~~~~~ 203 (848)
...+|.++|+.|.||||+|+.+++...
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 345899999999999999999997663
No 171
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=88.40 E-value=11 Score=44.35 Aligned_cols=24 Identities=33% Similarity=0.400 Sum_probs=20.9
Q ss_pred ccEEEEEeCCCCchhHHHHHHHHH
Q 003090 178 VSITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 178 ~~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
=..|+|+|-.|.|||||+|.+-.-
T Consensus 499 Ge~vaIvG~SGsGKSTL~KLL~gl 522 (709)
T COG2274 499 GEKVAIVGRSGSGKSTLLKLLLGL 522 (709)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 368999999999999999988643
No 172
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=88.34 E-value=6 Score=43.41 Aligned_cols=27 Identities=26% Similarity=0.374 Sum_probs=22.8
Q ss_pred CccEEEEEeCCCCchhHHHHHHHHHHh
Q 003090 177 NVSITGICGMGGVGKTTLVKEIQKQAK 203 (848)
Q Consensus 177 ~~~vi~i~G~gG~GKTtla~~v~~~~~ 203 (848)
...++-++|..|+||||.+..+.....
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~ 120 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFK 120 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 457899999999999999988876554
No 173
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=88.20 E-value=1.6 Score=42.70 Aligned_cols=27 Identities=19% Similarity=0.402 Sum_probs=22.9
Q ss_pred CCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 176 ENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 176 ~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
.....|.|+|.+|+|||||.+.+.+..
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~ 65 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGAD 65 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcch
Confidence 455789999999999999998888653
No 174
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.19 E-value=0.71 Score=50.64 Aligned_cols=50 Identities=20% Similarity=0.279 Sum_probs=41.5
Q ss_pred CcccccccchhHHHHHHHHHHhcCCcc-EEEEEeCCCCchhHHHHHHHHHH
Q 003090 153 SEGVYAFKSRESTMKDIMEAMKDENVS-ITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 153 ~~~~~~~vG~~~~~~~i~~~L~~~~~~-vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
|..-.+++|-+.-+..+..++..+.+. .+=++|..|+||||+|+.+.+..
T Consensus 14 P~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~L 64 (484)
T PRK14956 14 PQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRL 64 (484)
T ss_pred CCCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 344578999999999999998877765 46799999999999999987654
No 175
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=88.08 E-value=0.59 Score=45.72 Aligned_cols=48 Identities=27% Similarity=0.303 Sum_probs=40.2
Q ss_pred cccccchhHHHH---HHHHHHh------cCCccEEEEEeCCCCchhHHHHHHHHHHh
Q 003090 156 VYAFKSRESTMK---DIMEAMK------DENVSITGICGMGGVGKTTLVKEIQKQAK 203 (848)
Q Consensus 156 ~~~~vG~~~~~~---~i~~~L~------~~~~~vi~i~G~gG~GKTtla~~v~~~~~ 203 (848)
-++++|-++.+. -|++.|. +|-.+.|=.+|..|.|||.+|+++-|..+
T Consensus 120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~k 176 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAK 176 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccC
Confidence 457899988875 4666665 68889999999999999999999998764
No 176
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=88.03 E-value=0.88 Score=45.44 Aligned_cols=44 Identities=14% Similarity=0.215 Sum_probs=29.9
Q ss_pred ccchhHHHHHHH-HHHh-cCCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 159 FKSRESTMKDIM-EAMK-DENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 159 ~vG~~~~~~~i~-~~L~-~~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
+.|..+..-..+ ++.. .+....+-++|..|+|||+||+.+++..
T Consensus 21 ~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~ 66 (227)
T PRK08903 21 VAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADA 66 (227)
T ss_pred ccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 346544443333 3323 2444678899999999999999999865
No 177
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=88.00 E-value=1.1 Score=39.93 Aligned_cols=40 Identities=25% Similarity=0.281 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhc--CCccEEEEEeCCCCchhHHHHHHHHHHh
Q 003090 164 STMKDIMEAMKD--ENVSITGICGMGGVGKTTLVKEIQKQAK 203 (848)
Q Consensus 164 ~~~~~i~~~L~~--~~~~vi~i~G~gG~GKTtla~~v~~~~~ 203 (848)
++.+++-+.+.. ..-.++.+.|.-|.||||+++.+.+...
T Consensus 6 ~~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 6 KAMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 344444554442 2335899999999999999999987643
No 178
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=87.94 E-value=1.2 Score=46.87 Aligned_cols=59 Identities=22% Similarity=0.298 Sum_probs=45.2
Q ss_pred ccccchhHHHHHHHHHHhcCCcc-EEEEEeCCCCchhHHHHHHHHHH----hhccccCcEEEEE
Q 003090 157 YAFKSRESTMKDIMEAMKDENVS-ITGICGMGGVGKTTLVKEIQKQA----KEMKMFDDVAMAV 215 (848)
Q Consensus 157 ~~~vG~~~~~~~i~~~L~~~~~~-vi~i~G~gG~GKTtla~~v~~~~----~~~~~F~~~~wv~ 215 (848)
.+++|-+.-++.+..++....+. ..-++|..|+||||+|+.+.... ....|+|...|..
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~ 67 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKP 67 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecc
Confidence 46889999999999999866654 55789999999999999998753 1235666656654
No 179
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=87.89 E-value=0.74 Score=42.60 Aligned_cols=24 Identities=38% Similarity=0.516 Sum_probs=21.5
Q ss_pred EEEEEeCCCCchhHHHHHHHHHHh
Q 003090 180 ITGICGMGGVGKTTLVKEIQKQAK 203 (848)
Q Consensus 180 vi~i~G~gG~GKTtla~~v~~~~~ 203 (848)
|++|+|+.|+||||++..+....+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~ 24 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALK 24 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999998764
No 180
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=87.79 E-value=0.91 Score=46.35 Aligned_cols=35 Identities=20% Similarity=0.212 Sum_probs=28.8
Q ss_pred HHHHHHhcCCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 168 DIMEAMKDENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 168 ~i~~~L~~~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
+..+++...+..++.|+|..|.|||||...+.+..
T Consensus 94 ~~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l 128 (290)
T PRK10463 94 RNRARFAARKQLVLNLVSSPGSGKTTLLTETLMRL 128 (290)
T ss_pred HHHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34445557788999999999999999999888764
No 181
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.75 E-value=0.76 Score=51.73 Aligned_cols=49 Identities=22% Similarity=0.346 Sum_probs=40.2
Q ss_pred cccccccchhHHHHHHHHHHhcCCcc-EEEEEeCCCCchhHHHHHHHHHH
Q 003090 154 EGVYAFKSRESTMKDIMEAMKDENVS-ITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 154 ~~~~~~vG~~~~~~~i~~~L~~~~~~-vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
..-.+++|-+..++.+...+..+.+. .+=++|..|+||||+|+.+.+..
T Consensus 13 ~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L 62 (546)
T PRK14957 13 QSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCL 62 (546)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34567999999999999998876654 35689999999999999998644
No 182
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=87.70 E-value=5.1 Score=44.01 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=20.2
Q ss_pred ccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 178 VSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 178 ~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
-.++.++|.+|+||||++..+-...
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~ 245 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARY 245 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3589999999999999877765433
No 183
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=87.66 E-value=0.28 Score=28.16 Aligned_cols=21 Identities=38% Similarity=0.618 Sum_probs=14.4
Q ss_pred cccEEeccCCccccccChhhhhc
Q 003090 368 HLRLLDLTGCYILELIPRGVLSR 390 (848)
Q Consensus 368 ~L~~L~l~~~~~~~~~p~~~l~~ 390 (848)
+|++|++++|.+. .+|.+ +++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~-~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSS-FSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTT-TTT
T ss_pred CccEEECCCCcCE-eCChh-hcC
Confidence 4778888887554 67776 554
No 184
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=87.56 E-value=0.8 Score=48.34 Aligned_cols=46 Identities=17% Similarity=0.235 Sum_probs=39.3
Q ss_pred ccccchhHHHHHHHHHHhcCCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 157 YAFKSRESTMKDIMEAMKDENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 157 ~~~vG~~~~~~~i~~~L~~~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
..|||-++.+..++-.+.+....-+-|.|..|.||||+++.+-.-.
T Consensus 4 ~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred cccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 5789999999888877777777778899999999999999987544
No 185
>PRK04040 adenylate kinase; Provisional
Probab=87.54 E-value=0.53 Score=45.20 Aligned_cols=24 Identities=29% Similarity=0.537 Sum_probs=21.3
Q ss_pred cEEEEEeCCCCchhHHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
.+|.|+|+.|+||||+++.+.+..
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHh
Confidence 478999999999999999988654
No 186
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.49 E-value=0.87 Score=49.73 Aligned_cols=50 Identities=22% Similarity=0.314 Sum_probs=40.3
Q ss_pred CcccccccchhHHHHHHHHHHhcCCccE-EEEEeCCCCchhHHHHHHHHHH
Q 003090 153 SEGVYAFKSRESTMKDIMEAMKDENVSI-TGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 153 ~~~~~~~vG~~~~~~~i~~~L~~~~~~v-i~i~G~gG~GKTtla~~v~~~~ 202 (848)
|..-.+++|-+.-++.+..++.+..+.. +=++|..|+||||+|..+-+..
T Consensus 12 P~~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l 62 (397)
T PRK14955 12 PKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAV 62 (397)
T ss_pred CCcHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHh
Confidence 3345789999999998888887766644 6689999999999999887654
No 187
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=87.47 E-value=0.41 Score=53.79 Aligned_cols=74 Identities=27% Similarity=0.329 Sum_probs=51.4
Q ss_pred ccccccchhHHHHHHHHHHhcCC----------------------------------ccEEEEEeCCCCchhHHHHHHHH
Q 003090 155 GVYAFKSRESTMKDIMEAMKDEN----------------------------------VSITGICGMGGVGKTTLVKEIQK 200 (848)
Q Consensus 155 ~~~~~vG~~~~~~~i~~~L~~~~----------------------------------~~vi~i~G~gG~GKTtla~~v~~ 200 (848)
...+++|.+.--..++.||+.|+ -+|.=.+|..|+||||||.-|.+
T Consensus 269 ~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGKTTLAHViAk 348 (877)
T KOG1969|consen 269 KFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGKTTLAHVIAK 348 (877)
T ss_pred HHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCChhHHHHHHHH
Confidence 34567888888888899988443 24566899999999999988876
Q ss_pred HHhhccccCcEEEEEeccCCchhHHHHHHHhcc
Q 003090 201 QAKEMKMFDDVAMAVVSQTPSITKIQYEIAGWL 233 (848)
Q Consensus 201 ~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~~ 233 (848)
+.. | .++-+.-|+.-....+-..|...+
T Consensus 349 qaG----Y-sVvEINASDeRt~~~v~~kI~~av 376 (877)
T KOG1969|consen 349 QAG----Y-SVVEINASDERTAPMVKEKIENAV 376 (877)
T ss_pred hcC----c-eEEEecccccccHHHHHHHHHHHH
Confidence 541 2 355666677666665555555444
No 188
>PRK00889 adenylylsulfate kinase; Provisional
Probab=87.45 E-value=0.56 Score=44.62 Aligned_cols=27 Identities=22% Similarity=0.441 Sum_probs=23.3
Q ss_pred CccEEEEEeCCCCchhHHHHHHHHHHh
Q 003090 177 NVSITGICGMGGVGKTTLVKEIQKQAK 203 (848)
Q Consensus 177 ~~~vi~i~G~gG~GKTtla~~v~~~~~ 203 (848)
.-.++.++|+.|.||||+|+.+.....
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~ 29 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLR 29 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 346899999999999999999997653
No 189
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=87.44 E-value=0.74 Score=48.60 Aligned_cols=48 Identities=19% Similarity=0.227 Sum_probs=41.8
Q ss_pred cccccchhHHHHHHHHHHhcCCccEEEEEeCCCCchhHHHHHHHHHHh
Q 003090 156 VYAFKSRESTMKDIMEAMKDENVSITGICGMGGVGKTTLVKEIQKQAK 203 (848)
Q Consensus 156 ~~~~vG~~~~~~~i~~~L~~~~~~vi~i~G~gG~GKTtla~~v~~~~~ 203 (848)
-..+||-++.+..++..+.+..+.-+-|.|..|.||||+|+.+++-..
T Consensus 16 f~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~ 63 (350)
T CHL00081 16 FTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLP 63 (350)
T ss_pred HHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHh
Confidence 468999999999888888888887777999999999999999987653
No 190
>PRK10536 hypothetical protein; Provisional
Probab=87.40 E-value=3.4 Score=41.30 Aligned_cols=46 Identities=17% Similarity=0.250 Sum_probs=37.8
Q ss_pred ccccccchhHHHHHHHHHHhcCCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 155 GVYAFKSRESTMKDIMEAMKDENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 155 ~~~~~vG~~~~~~~i~~~L~~~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
+...+.++.......+.++.+. .++-+.|..|.|||+||.++.-+.
T Consensus 53 ~~~~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~ 98 (262)
T PRK10536 53 DTSPILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEA 98 (262)
T ss_pred CCccccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHH
Confidence 3456788888888899988764 489999999999999998877643
No 191
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=87.39 E-value=0.44 Score=45.42 Aligned_cols=24 Identities=42% Similarity=0.746 Sum_probs=21.2
Q ss_pred EEEEEeCCCCchhHHHHHHHHHHh
Q 003090 180 ITGICGMGGVGKTTLVKEIQKQAK 203 (848)
Q Consensus 180 vi~i~G~gG~GKTtla~~v~~~~~ 203 (848)
+|+|.|..|.||||+|+.+.....
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~ 24 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLR 24 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999987653
No 192
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=87.37 E-value=0.87 Score=51.47 Aligned_cols=51 Identities=20% Similarity=0.268 Sum_probs=41.2
Q ss_pred CCcccccccchhHHHHHHHHHHhcCCcc-EEEEEeCCCCchhHHHHHHHHHH
Q 003090 152 SSEGVYAFKSRESTMKDIMEAMKDENVS-ITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 152 ~~~~~~~~vG~~~~~~~i~~~L~~~~~~-vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
.|..-.+++|.+..++.+.+++....+. .+=++|..|+||||+|+.+-+..
T Consensus 11 RP~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L 62 (605)
T PRK05896 11 RPHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAI 62 (605)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3444578999999999999998766554 46689999999999999887654
No 193
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.34 E-value=0.52 Score=28.29 Aligned_cols=21 Identities=38% Similarity=0.556 Sum_probs=14.3
Q ss_pred ccCCCEEEccCCCCcccChhh
Q 003090 343 LSGLEILDLSESDVSEIPVSF 363 (848)
Q Consensus 343 l~~L~~L~l~~~~l~~lp~~i 363 (848)
+.+|++|++++|.++.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 356777777777777777653
No 194
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.34 E-value=0.52 Score=28.29 Aligned_cols=21 Identities=38% Similarity=0.556 Sum_probs=14.3
Q ss_pred ccCCCEEEccCCCCcccChhh
Q 003090 343 LSGLEILDLSESDVSEIPVSF 363 (848)
Q Consensus 343 l~~L~~L~l~~~~l~~lp~~i 363 (848)
+.+|++|++++|.++.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 356777777777777777653
No 195
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=87.29 E-value=0.78 Score=44.44 Aligned_cols=22 Identities=45% Similarity=0.659 Sum_probs=18.6
Q ss_pred EEEEEeCCCCchhHHHHHHHHH
Q 003090 180 ITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 180 vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.|+|+|-||+||||+|..+...
T Consensus 2 kIaI~GKGG~GKTtiaalll~~ 23 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKR 23 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHH
Confidence 6899999999999999875443
No 196
>PRK00625 shikimate kinase; Provisional
Probab=87.13 E-value=0.53 Score=44.44 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=19.8
Q ss_pred EEEEEeCCCCchhHHHHHHHHHH
Q 003090 180 ITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 180 vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
.|-++||.|+||||+++.+-+..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37799999999999999987654
No 197
>PRK08084 DNA replication initiation factor; Provisional
Probab=87.09 E-value=1.1 Score=45.01 Aligned_cols=47 Identities=11% Similarity=0.238 Sum_probs=32.0
Q ss_pred ccccchhH-HHHHHHHHHhcCCccEEEEEeCCCCchhHHHHHHHHHHh
Q 003090 157 YAFKSRES-TMKDIMEAMKDENVSITGICGMGGVGKTTLVKEIQKQAK 203 (848)
Q Consensus 157 ~~~vG~~~-~~~~i~~~L~~~~~~vi~i~G~gG~GKTtla~~v~~~~~ 203 (848)
..++|... .+..+..+...+....+-++|..|+|||+|++.+.+...
T Consensus 23 ~f~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~ 70 (235)
T PRK08084 23 SFYPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELS 70 (235)
T ss_pred ccccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 44556322 333333443355556889999999999999999998654
No 198
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=87.02 E-value=0.88 Score=54.00 Aligned_cols=47 Identities=28% Similarity=0.279 Sum_probs=39.7
Q ss_pred cccccchhHHHHHHHHHHh------cCCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 156 VYAFKSRESTMKDIMEAMK------DENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 156 ~~~~vG~~~~~~~i~~~L~------~~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
+...+|.++-++.|+++|. ...-.++.++|..|+||||+|+.+....
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l 373 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT 373 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3568999999999999887 2345689999999999999999998654
No 199
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=86.83 E-value=0.59 Score=44.67 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=20.9
Q ss_pred cEEEEEeCCCCchhHHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
.++.|+|..|+||||+++.+....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 368999999999999999987654
No 200
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=86.37 E-value=0.79 Score=44.99 Aligned_cols=31 Identities=19% Similarity=0.381 Sum_probs=26.2
Q ss_pred HHhcCCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 172 AMKDENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 172 ~L~~~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
.+...++.+|+++|..|.|||||.+++....
T Consensus 16 ~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~ 46 (207)
T TIGR00073 16 RLDKHGLVVLNFMSSPGSGKTTLIEKLIDNL 46 (207)
T ss_pred HhhhcCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4446789999999999999999999887653
No 201
>PRK10867 signal recognition particle protein; Provisional
Probab=86.21 E-value=7.9 Score=42.42 Aligned_cols=26 Identities=27% Similarity=0.442 Sum_probs=20.8
Q ss_pred CCccEEEEEeCCCCchhHHHHHHHHH
Q 003090 176 ENVSITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 176 ~~~~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
+...+|-++|..|+||||.+..+-..
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~ 123 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKY 123 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHH
Confidence 34679999999999999977666543
No 202
>PRK03846 adenylylsulfate kinase; Provisional
Probab=86.18 E-value=0.71 Score=44.94 Aligned_cols=27 Identities=19% Similarity=0.366 Sum_probs=23.4
Q ss_pred CCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 176 ENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 176 ~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
....++.++|+.|.||||+|+.+....
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l 48 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEAL 48 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 455799999999999999999998754
No 203
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=86.18 E-value=9.7 Score=40.64 Aligned_cols=36 Identities=25% Similarity=0.450 Sum_probs=24.2
Q ss_pred HHHHHHHhcC----CccEEEEEeCCCCchhH-HHHHHHHHH
Q 003090 167 KDIMEAMKDE----NVSITGICGMGGVGKTT-LVKEIQKQA 202 (848)
Q Consensus 167 ~~i~~~L~~~----~~~vi~i~G~gG~GKTt-la~~v~~~~ 202 (848)
..+..++..+ +-+++..||.-|||||| ||+....-.
T Consensus 188 ~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKLAar~~ 228 (407)
T COG1419 188 RKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKLAARYV 228 (407)
T ss_pred HHHHHhhccccccccCcEEEEECCCCCcHHHHHHHHHHHHH
Confidence 3444444433 35899999999999997 666554433
No 204
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=86.17 E-value=0.56 Score=44.84 Aligned_cols=23 Identities=43% Similarity=0.638 Sum_probs=20.6
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
+++.++|..|+||||+++.+.+.
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHcc
Confidence 47899999999999999999863
No 205
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.14 E-value=1.1 Score=51.04 Aligned_cols=50 Identities=18% Similarity=0.274 Sum_probs=40.9
Q ss_pred CcccccccchhHHHHHHHHHHhcCCc-cEEEEEeCCCCchhHHHHHHHHHH
Q 003090 153 SEGVYAFKSRESTMKDIMEAMKDENV-SITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 153 ~~~~~~~vG~~~~~~~i~~~L~~~~~-~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
|..-.+++|.+..++.+..++....+ ..+=++|..|+||||+|+.+-+..
T Consensus 11 PktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~L 61 (702)
T PRK14960 11 PRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCL 61 (702)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34457899999999999999986665 455789999999999999887654
No 206
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=86.04 E-value=1.3 Score=46.08 Aligned_cols=47 Identities=23% Similarity=0.321 Sum_probs=40.9
Q ss_pred cccccchhHHHHHHHHHHh------cCCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 156 VYAFKSRESTMKDIMEAMK------DENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 156 ~~~~vG~~~~~~~i~~~L~------~~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
+.+++|.++.++++++.+. +..-+|+-.+|..|.||+|++..+-+-.
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~l 112 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGL 112 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999997 3455789999999999999999988665
No 207
>PRK06217 hypothetical protein; Validated
Probab=86.00 E-value=0.63 Score=44.62 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=21.2
Q ss_pred EEEEEeCCCCchhHHHHHHHHHHh
Q 003090 180 ITGICGMGGVGKTTLVKEIQKQAK 203 (848)
Q Consensus 180 vi~i~G~gG~GKTtla~~v~~~~~ 203 (848)
.|.|.|..|.||||+|+.+.+...
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 488999999999999999987654
No 208
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=85.96 E-value=0.97 Score=41.52 Aligned_cols=25 Identities=28% Similarity=0.523 Sum_probs=22.2
Q ss_pred cEEEEEeCCCCchhHHHHHHHHHHh
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQAK 203 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~~~ 203 (848)
.+|=+.|..|.||||+|+.+.....
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~ 27 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLF 27 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4778999999999999999998764
No 209
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=85.85 E-value=1.3 Score=50.16 Aligned_cols=47 Identities=26% Similarity=0.283 Sum_probs=38.7
Q ss_pred cccccchhHHHHHHHHHHhcCCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 156 VYAFKSRESTMKDIMEAMKDENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 156 ~~~~vG~~~~~~~i~~~L~~~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
-.+++|.+..++.+...+......-+=|+|..|+|||++|+.+++..
T Consensus 64 f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 64 FDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred HHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999988887765544556799999999999999998754
No 210
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.67 E-value=1.2 Score=52.57 Aligned_cols=49 Identities=18% Similarity=0.294 Sum_probs=41.2
Q ss_pred cccccccchhHHHHHHHHHHhcCCccEE-EEEeCCCCchhHHHHHHHHHH
Q 003090 154 EGVYAFKSRESTMKDIMEAMKDENVSIT-GICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 154 ~~~~~~vG~~~~~~~i~~~L~~~~~~vi-~i~G~gG~GKTtla~~v~~~~ 202 (848)
..-.+|+|-+.-++.+.+++..+.+.-. =++|..|+||||+|+.+.+..
T Consensus 13 ~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~L 62 (944)
T PRK14949 13 ATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGL 62 (944)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3457899999999999999887777654 689999999999999998765
No 211
>PRK00131 aroK shikimate kinase; Reviewed
Probab=85.63 E-value=0.82 Score=43.34 Aligned_cols=25 Identities=24% Similarity=0.306 Sum_probs=21.8
Q ss_pred ccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 178 VSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 178 ~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
-..|-++|+.|.||||+|+.+....
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999998764
No 212
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=85.62 E-value=0.56 Score=42.98 Aligned_cols=23 Identities=39% Similarity=0.540 Sum_probs=20.3
Q ss_pred EEEEEeCCCCchhHHHHHHHHHH
Q 003090 180 ITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 180 vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
+|.|+|..|.||||+|+.+-...
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999888654
No 213
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=85.61 E-value=7.9 Score=41.77 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=21.1
Q ss_pred ccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 178 VSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 178 ~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
..++.++|..|+||||.+..+....
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~ 198 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIY 198 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999988776544
No 214
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=85.51 E-value=1.9 Score=41.75 Aligned_cols=53 Identities=21% Similarity=0.287 Sum_probs=34.8
Q ss_pred cchhHHHHHHHHHHhcCCccEEEEEeCCCCchhHHHHHHHHHHhhccccCcEEEE
Q 003090 160 KSRESTMKDIMEAMKDENVSITGICGMGGVGKTTLVKEIQKQAKEMKMFDDVAMA 214 (848)
Q Consensus 160 vG~~~~~~~i~~~L~~~~~~vi~i~G~gG~GKTtla~~v~~~~~~~~~F~~~~wv 214 (848)
..+..+-...++.|. +..++.+.|..|.|||.||-+.--+.-..+.++..+++
T Consensus 3 ~p~~~~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~ 55 (205)
T PF02562_consen 3 KPKNEEQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIIT 55 (205)
T ss_dssp ---SHHHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEE
T ss_pred cCCCHHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 344556667778777 55689999999999999987766555445777777665
No 215
>PRK13531 regulatory ATPase RavA; Provisional
Probab=85.47 E-value=1.3 Score=48.64 Aligned_cols=44 Identities=11% Similarity=0.147 Sum_probs=37.3
Q ss_pred ccccchhHHHHHHHHHHhcCCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 157 YAFKSRESTMKDIMEAMKDENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 157 ~~~vG~~~~~~~i~~~L~~~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
..++|+++.++.+...+.... .+=+.|..|+|||++|+.+-...
T Consensus 20 ~~i~gre~vI~lll~aalag~--hVLL~GpPGTGKT~LAraLa~~~ 63 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSGE--SVFLLGPPGIAKSLIARRLKFAF 63 (498)
T ss_pred hhccCcHHHHHHHHHHHccCC--CEEEECCCChhHHHHHHHHHHHh
Confidence 568999999999888887555 46689999999999999998754
No 216
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.35 E-value=1.1 Score=49.55 Aligned_cols=49 Identities=18% Similarity=0.251 Sum_probs=39.4
Q ss_pred CCcccccccchhHHHHHHHHHHhcCCcc-EEEEEeCCCCchhHHHHHHHH
Q 003090 152 SSEGVYAFKSRESTMKDIMEAMKDENVS-ITGICGMGGVGKTTLVKEIQK 200 (848)
Q Consensus 152 ~~~~~~~~vG~~~~~~~i~~~L~~~~~~-vi~i~G~gG~GKTtla~~v~~ 200 (848)
.|..-.+++|-+..++.+.+.+....+. .+=++|..|+||||+|+.+-+
T Consensus 8 RP~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk 57 (491)
T PRK14964 8 RPSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISL 57 (491)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHH
Confidence 3444578999999888888888766665 577999999999999988765
No 217
>PRK13949 shikimate kinase; Provisional
Probab=85.32 E-value=0.74 Score=43.39 Aligned_cols=23 Identities=35% Similarity=0.417 Sum_probs=20.4
Q ss_pred EEEEEeCCCCchhHHHHHHHHHH
Q 003090 180 ITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 180 vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
.|.++|+.|.||||+++.+.+..
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48899999999999999988654
No 218
>PRK08727 hypothetical protein; Validated
Probab=84.93 E-value=1.7 Score=43.53 Aligned_cols=56 Identities=14% Similarity=0.169 Sum_probs=35.2
Q ss_pred ccchhHHHHHHHHHHhcCCccEEEEEeCCCCchhHHHHHHHHHHhhccccCcEEEEEe
Q 003090 159 FKSRESTMKDIMEAMKDENVSITGICGMGGVGKTTLVKEIQKQAKEMKMFDDVAMAVV 216 (848)
Q Consensus 159 ~vG~~~~~~~i~~~L~~~~~~vi~i~G~gG~GKTtla~~v~~~~~~~~~F~~~~wv~v 216 (848)
++|-......+..+........+-++|..|+|||+|++++.+...-+ .....++..
T Consensus 22 ~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~--~~~~~y~~~ 77 (233)
T PRK08727 22 IAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQA--GRSSAYLPL 77 (233)
T ss_pred cCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEeH
Confidence 44444444444444333333569999999999999999998865432 224455544
No 219
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=84.83 E-value=0.76 Score=44.20 Aligned_cols=23 Identities=22% Similarity=0.499 Sum_probs=20.3
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.++.|+|+.|+||||+++.+...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 36889999999999999999754
No 220
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=84.77 E-value=0.8 Score=41.31 Aligned_cols=24 Identities=33% Similarity=0.527 Sum_probs=21.2
Q ss_pred cEEEEEeCCCCchhHHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
..+.++|..|+||||+++.+....
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~ 26 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAREL 26 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhcc
Confidence 478899999999999999998655
No 221
>PRK09087 hypothetical protein; Validated
Probab=84.75 E-value=1.8 Score=43.05 Aligned_cols=28 Identities=21% Similarity=0.276 Sum_probs=23.2
Q ss_pred cCCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 175 DENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 175 ~~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
.+..+.+.|||..|+|||+|++.+.+..
T Consensus 41 ~~~~~~l~l~G~~GsGKThLl~~~~~~~ 68 (226)
T PRK09087 41 NWPSPVVVLAGPVGSGKTHLASIWREKS 68 (226)
T ss_pred cCCCCeEEEECCCCCCHHHHHHHHHHhc
Confidence 4555679999999999999999888653
No 222
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.71 E-value=1.3 Score=50.28 Aligned_cols=50 Identities=22% Similarity=0.351 Sum_probs=41.3
Q ss_pred CcccccccchhHHHHHHHHHHhcCCccE-EEEEeCCCCchhHHHHHHHHHH
Q 003090 153 SEGVYAFKSRESTMKDIMEAMKDENVSI-TGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 153 ~~~~~~~vG~~~~~~~i~~~L~~~~~~v-i~i~G~gG~GKTtla~~v~~~~ 202 (848)
+..-.++||-+.-++.+.+++..+.+.- +=++|..|+||||+|+.+-+..
T Consensus 12 PqtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaL 62 (700)
T PRK12323 12 PRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSL 62 (700)
T ss_pred CCcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3345789999999999999998777654 4689999999999998887654
No 223
>PRK06893 DNA replication initiation factor; Validated
Probab=84.69 E-value=1.8 Score=43.23 Aligned_cols=41 Identities=20% Similarity=0.118 Sum_probs=29.7
Q ss_pred cCCccEEEEEeCCCCchhHHHHHHHHHHhhccccCcEEEEEec
Q 003090 175 DENVSITGICGMGGVGKTTLVKEIQKQAKEMKMFDDVAMAVVS 217 (848)
Q Consensus 175 ~~~~~vi~i~G~gG~GKTtla~~v~~~~~~~~~F~~~~wv~vs 217 (848)
++....+-++|..|+|||+|++++.+....+ .....++.+.
T Consensus 36 ~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~--~~~~~y~~~~ 76 (229)
T PRK06893 36 DLQQPFFYIWGGKSSGKSHLLKAVSNHYLLN--QRTAIYIPLS 76 (229)
T ss_pred ccCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEeeHH
Confidence 4444678999999999999999999875333 2344555553
No 224
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=84.65 E-value=0.77 Score=44.81 Aligned_cols=22 Identities=36% Similarity=0.589 Sum_probs=20.1
Q ss_pred cEEEEEeCCCCchhHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQK 200 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~ 200 (848)
.+++|+|-.|.|||||++.+--
T Consensus 34 e~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 34 ETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CEEEEEcCCCCCHHHHHHHHhc
Confidence 5899999999999999998874
No 225
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=84.65 E-value=1.3 Score=50.76 Aligned_cols=50 Identities=22% Similarity=0.362 Sum_probs=41.4
Q ss_pred CCcccccccchhHHHHHHHHHHhcCCcc-EEEEEeCCCCchhHHHHHHHHH
Q 003090 152 SSEGVYAFKSRESTMKDIMEAMKDENVS-ITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 152 ~~~~~~~~vG~~~~~~~i~~~L~~~~~~-vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.|..-.+++|.+..++.+.+++....+. .+=++|..|+||||+|+.+-+.
T Consensus 11 RP~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~ 61 (709)
T PRK08691 11 RPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKS 61 (709)
T ss_pred CCCCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3444578999999999999999877654 5678999999999999888764
No 226
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=84.64 E-value=1.3 Score=50.85 Aligned_cols=53 Identities=21% Similarity=0.266 Sum_probs=43.1
Q ss_pred ccCCcccccccchhHHHHHHHHHHhcC-----CccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 150 ISSSEGVYAFKSRESTMKDIMEAMKDE-----NVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 150 ~~~~~~~~~~vG~~~~~~~i~~~L~~~-----~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
.+.|....+++|-++.++++..|+... ...++.++|..|.||||+++.+....
T Consensus 77 KyrP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 77 KYKPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 445556778999999999999998743 23569999999999999999998754
No 227
>PRK00300 gmk guanylate kinase; Provisional
Probab=84.63 E-value=0.81 Score=44.85 Aligned_cols=24 Identities=33% Similarity=0.501 Sum_probs=21.6
Q ss_pred ccEEEEEeCCCCchhHHHHHHHHH
Q 003090 178 VSITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 178 ~~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
-.++.|+|..|+||||+++.+...
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 368999999999999999999875
No 228
>PRK13695 putative NTPase; Provisional
Probab=84.56 E-value=1.3 Score=41.97 Aligned_cols=24 Identities=54% Similarity=0.649 Sum_probs=21.0
Q ss_pred EEEEEeCCCCchhHHHHHHHHHHh
Q 003090 180 ITGICGMGGVGKTTLVKEIQKQAK 203 (848)
Q Consensus 180 vi~i~G~gG~GKTtla~~v~~~~~ 203 (848)
.+.+.|..|+||||+++.+++...
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~ 25 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLK 25 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999987654
No 229
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=84.53 E-value=1.4 Score=48.15 Aligned_cols=47 Identities=23% Similarity=0.301 Sum_probs=37.1
Q ss_pred cccccchhHHHHHHHHHHh----c---------CCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 156 VYAFKSRESTMKDIMEAMK----D---------ENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 156 ~~~~vG~~~~~~~i~~~L~----~---------~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
..+|.|.++.++++.+.+. . ....-+-++|..|.|||++|++|.+..
T Consensus 182 ~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el 241 (438)
T PTZ00361 182 YADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANET 241 (438)
T ss_pred HHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 3568899999988888764 1 123457799999999999999999865
No 230
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.50 E-value=1.4 Score=49.67 Aligned_cols=50 Identities=18% Similarity=0.256 Sum_probs=41.3
Q ss_pred CcccccccchhHHHHHHHHHHhcCCccE-EEEEeCCCCchhHHHHHHHHHH
Q 003090 153 SEGVYAFKSRESTMKDIMEAMKDENVSI-TGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 153 ~~~~~~~vG~~~~~~~i~~~L~~~~~~v-i~i~G~gG~GKTtla~~v~~~~ 202 (848)
|..-.++||-+.-++.+.+++....+.- +=++|..|+||||+|+.+-+..
T Consensus 12 P~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l 62 (509)
T PRK14958 12 PRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCL 62 (509)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHh
Confidence 3445789999999999999998776654 5689999999999998887654
No 231
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=84.44 E-value=0.89 Score=41.08 Aligned_cols=24 Identities=38% Similarity=0.562 Sum_probs=21.1
Q ss_pred cEEEEEeCCCCchhHHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
.+++|+|..|.|||||.+.+....
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CEEEEEccCCCccccceeeecccc
Confidence 589999999999999999887543
No 232
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=84.44 E-value=1 Score=42.61 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=21.1
Q ss_pred cEEEEEeCCCCchhHHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
..|.++|+.|.||||+++.+-+..
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHc
Confidence 468999999999999999998653
No 233
>PRK13975 thymidylate kinase; Provisional
Probab=84.43 E-value=0.9 Score=44.14 Aligned_cols=25 Identities=28% Similarity=0.383 Sum_probs=22.1
Q ss_pred cEEEEEeCCCCchhHHHHHHHHHHh
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQAK 203 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~~~ 203 (848)
..|.|.|+.|+||||+|+.+.+...
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~ 27 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLN 27 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999987663
No 234
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=84.37 E-value=1.2 Score=41.62 Aligned_cols=24 Identities=38% Similarity=0.580 Sum_probs=21.3
Q ss_pred cEEEEEeCCCCchhHHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
..+.+.|..|+||+|+++.++++.
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc
Confidence 467899999999999999999764
No 235
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.34 E-value=1.6 Score=47.19 Aligned_cols=50 Identities=18% Similarity=0.377 Sum_probs=40.9
Q ss_pred CcccccccchhHHHHHHHHHHhcCCcc-EEEEEeCCCCchhHHHHHHHHHH
Q 003090 153 SEGVYAFKSRESTMKDIMEAMKDENVS-ITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 153 ~~~~~~~vG~~~~~~~i~~~L~~~~~~-vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
|..-.+++|.+..++.+..++.+.... .+=++|..|+||||+|+.+-+..
T Consensus 13 P~~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l 63 (367)
T PRK14970 13 PQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKI 63 (367)
T ss_pred CCcHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 334567899999999999999876654 67799999999999999986654
No 236
>PRK06620 hypothetical protein; Validated
Probab=84.31 E-value=1.8 Score=42.63 Aligned_cols=47 Identities=23% Similarity=0.004 Sum_probs=30.6
Q ss_pred cccccchhH--HHHHHHHHHhcCCc----cEEEEEeCCCCchhHHHHHHHHHH
Q 003090 156 VYAFKSRES--TMKDIMEAMKDENV----SITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 156 ~~~~vG~~~--~~~~i~~~L~~~~~----~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
+.-++|--. ....+..|-..|.. ..+-++|..|+|||+|++.+.+..
T Consensus 16 d~Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~ 68 (214)
T PRK06620 16 DEFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLS 68 (214)
T ss_pred hhhEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhcc
Confidence 455667622 23344444333432 458899999999999999877654
No 237
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=84.25 E-value=0.8 Score=39.34 Aligned_cols=22 Identities=45% Similarity=0.628 Sum_probs=18.7
Q ss_pred EEEEeCCCCchhHHHHHHHHHH
Q 003090 181 TGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 181 i~i~G~gG~GKTtla~~v~~~~ 202 (848)
|-|+|..|+|||++|+.+..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDL 22 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 3589999999999999977665
No 238
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=84.17 E-value=0.79 Score=46.83 Aligned_cols=27 Identities=30% Similarity=0.441 Sum_probs=23.0
Q ss_pred cEEEEEeCCCCchhHHHHHHHHHHhhc
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQAKEM 205 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~~~~~ 205 (848)
++++|+|.+|.|||||+..+-....-+
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~ 28 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLSGR 28 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 479999999999999999988766433
No 239
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=84.07 E-value=0.91 Score=41.99 Aligned_cols=22 Identities=36% Similarity=0.448 Sum_probs=19.5
Q ss_pred EEEEeCCCCchhHHHHHHHHHH
Q 003090 181 TGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 181 i~i~G~gG~GKTtla~~v~~~~ 202 (848)
|.++|+.|.||||+|+.+....
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 6789999999999999997654
No 240
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=84.06 E-value=0.96 Score=39.57 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=19.4
Q ss_pred EEEEeCCCCchhHHHHHHHHHH
Q 003090 181 TGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 181 i~i~G~gG~GKTtla~~v~~~~ 202 (848)
|.|+|-.|+|||||.+.+....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 6799999999999999888654
No 241
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=84.04 E-value=0.93 Score=38.54 Aligned_cols=21 Identities=38% Similarity=0.414 Sum_probs=19.0
Q ss_pred cEEEEEeCCCCchhHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQ 199 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~ 199 (848)
..+.|+|..|.|||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 578999999999999998875
No 242
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=84.03 E-value=1.6 Score=47.34 Aligned_cols=48 Identities=21% Similarity=0.252 Sum_probs=37.7
Q ss_pred ccccccchhHHHHHHHHHHh----------c---CCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 155 GVYAFKSRESTMKDIMEAMK----------D---ENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 155 ~~~~~vG~~~~~~~i~~~L~----------~---~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
...+|.|.+..++++.+.+. . ...+-+-++|..|.|||++|+++.+..
T Consensus 143 ~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l 203 (398)
T PTZ00454 143 TYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT 203 (398)
T ss_pred CHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc
Confidence 34678999999988877653 1 223567799999999999999998764
No 243
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=84.01 E-value=0.8 Score=41.40 Aligned_cols=21 Identities=38% Similarity=0.650 Sum_probs=19.1
Q ss_pred EEEEeCCCCchhHHHHHHHHH
Q 003090 181 TGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 181 i~i~G~gG~GKTtla~~v~~~ 201 (848)
+.|+|..|+||||+++.+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999864
No 244
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=84.00 E-value=0.84 Score=42.07 Aligned_cols=22 Identities=32% Similarity=0.566 Sum_probs=19.1
Q ss_pred EEEEEeCCCCchhHHHHHHHHH
Q 003090 180 ITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 180 vi~i~G~gG~GKTtla~~v~~~ 201 (848)
++-++|..|+||||+|+.+.+.
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 3678999999999999998765
No 245
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=83.95 E-value=0.84 Score=43.77 Aligned_cols=23 Identities=26% Similarity=0.278 Sum_probs=19.8
Q ss_pred EEEEEeCCCCchhHHHHHHHHHH
Q 003090 180 ITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 180 vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
||-|+|+.|+||||+|+.+....
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 57899999999999999987643
No 246
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=83.92 E-value=0.75 Score=42.31 Aligned_cols=23 Identities=22% Similarity=0.603 Sum_probs=20.2
Q ss_pred EEEEEeCCCCchhHHHHHHHHHH
Q 003090 180 ITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 180 vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
++-|+|..|.||||+|+.+....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 47899999999999999988754
No 247
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=83.92 E-value=1 Score=40.28 Aligned_cols=22 Identities=32% Similarity=0.433 Sum_probs=19.6
Q ss_pred EEEEeCCCCchhHHHHHHHHHH
Q 003090 181 TGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 181 i~i~G~gG~GKTtla~~v~~~~ 202 (848)
|-++|..|.||||+|+.+.+..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 3589999999999999999875
No 248
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=83.81 E-value=4 Score=40.34 Aligned_cols=53 Identities=17% Similarity=0.223 Sum_probs=40.9
Q ss_pred CcccccccchhHHHHHHHHHHh----cCCccEEEEEeCCCCchhHHHHHHHHHHhhc
Q 003090 153 SEGVYAFKSRESTMKDIMEAMK----DENVSITGICGMGGVGKTTLVKEIQKQAKEM 205 (848)
Q Consensus 153 ~~~~~~~vG~~~~~~~i~~~L~----~~~~~vi~i~G~gG~GKTtla~~v~~~~~~~ 205 (848)
+.....++|.|..++.+++=.. .....-+=+||..|.|||++++++.+.-..+
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~ 79 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQ 79 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhc
Confidence 3456789999999988877543 4445566789999999999999998765433
No 249
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=83.79 E-value=1.3 Score=41.16 Aligned_cols=25 Identities=32% Similarity=0.595 Sum_probs=22.0
Q ss_pred cEEEEEeCCCCchhHHHHHHHHHHh
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQAK 203 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~~~ 203 (848)
.+++|+|..|.||||++..+.....
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~ 26 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALS 26 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999987653
No 250
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=83.74 E-value=2.2 Score=41.95 Aligned_cols=46 Identities=24% Similarity=0.225 Sum_probs=34.0
Q ss_pred cEEEEEeCCCCchhHHHHHHHHHHhhccccCcEEEEEeccCCchhHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQAKEMKMFDDVAMAVVSQTPSITKIQY 227 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~ 227 (848)
+++-|+|.+|.|||+++..+..... ..-..++|++... ++..++.+
T Consensus 13 ~i~~i~G~~GsGKT~l~~~~~~~~~--~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 13 TITQIYGPPGSGKTNICMILAVNAA--RQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEECCC-CCHHHHHH
Confidence 6889999999999999988765442 2245688887765 66655554
No 251
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=83.69 E-value=1 Score=42.79 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=21.0
Q ss_pred cEEEEEeCCCCchhHHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
.+|-+.|..|.||||+|+.+....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 478899999999999999997653
No 252
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=83.50 E-value=3 Score=40.32 Aligned_cols=25 Identities=32% Similarity=0.562 Sum_probs=20.0
Q ss_pred cEEEEEeCCCCchhHHHHHHHHHHh
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQAK 203 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~~~ 203 (848)
+|+.+||..|+||||.+-.+.....
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~ 26 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLK 26 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHh
Confidence 6899999999999997666655443
No 253
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=83.43 E-value=0.94 Score=45.32 Aligned_cols=25 Identities=44% Similarity=0.550 Sum_probs=22.0
Q ss_pred ccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 178 VSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 178 ~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
-.+++|+|..|+|||||.+.+..-.
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g~l 52 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAGLL 52 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC
Confidence 3689999999999999999998644
No 254
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=83.25 E-value=1 Score=41.10 Aligned_cols=24 Identities=42% Similarity=0.548 Sum_probs=19.8
Q ss_pred ccEEEEEeCCCCchhHHHHHHHHH
Q 003090 178 VSITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 178 ~~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
..++.|+|..|+||||+.+.+-..
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~ 27 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKE 27 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHH
Confidence 468999999999999987666543
No 255
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=83.22 E-value=2 Score=43.12 Aligned_cols=49 Identities=22% Similarity=0.126 Sum_probs=35.0
Q ss_pred cEEEEEeCCCCchhHHHHHHHHHHhhccc----cCcEEEEEeccCCchhHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQAKEMKM----FDDVAMAVVSQTPSITKIQY 227 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~l~~ 227 (848)
.++.|+|..|.|||+++..+.-....... -..++|++-...++..++..
T Consensus 20 ~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~ 72 (235)
T cd01123 20 SITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQ 72 (235)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHH
Confidence 68899999999999999988644322221 25688888777666655543
No 256
>PRK13947 shikimate kinase; Provisional
Probab=83.15 E-value=1 Score=42.58 Aligned_cols=23 Identities=30% Similarity=0.364 Sum_probs=20.1
Q ss_pred EEEEEeCCCCchhHHHHHHHHHH
Q 003090 180 ITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 180 vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
.|.++|+.|+||||+|+.+-+..
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l 25 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL 25 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 47899999999999999987654
No 257
>CHL00095 clpC Clp protease ATP binding subunit
Probab=83.10 E-value=37 Score=41.14 Aligned_cols=45 Identities=20% Similarity=0.307 Sum_probs=36.0
Q ss_pred ccccchhHHHHHHHHHHhc---------CCccEEEEEeCCCCchhHHHHHHHHH
Q 003090 157 YAFKSRESTMKDIMEAMKD---------ENVSITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 157 ~~~vG~~~~~~~i~~~L~~---------~~~~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
..|+|-++.++.+.+.+.. ....++-++|..|+|||++|+.+-+.
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~ 562 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASY 562 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHH
Confidence 5689999999999888761 12345668999999999999988754
No 258
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=82.96 E-value=0.87 Score=47.06 Aligned_cols=24 Identities=33% Similarity=0.552 Sum_probs=19.3
Q ss_pred cEEEEEeCCCCchhHHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
+.|+|+|-||+||||++..+--..
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~L 24 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAAL 24 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHH
Confidence 368999999999999887665443
No 259
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=82.95 E-value=1.8 Score=50.06 Aligned_cols=51 Identities=22% Similarity=0.318 Sum_probs=40.6
Q ss_pred CCcccccccchhHHHHHHHHHHhcCCcc-EEEEEeCCCCchhHHHHHHHHHH
Q 003090 152 SSEGVYAFKSRESTMKDIMEAMKDENVS-ITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 152 ~~~~~~~~vG~~~~~~~i~~~L~~~~~~-vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
.+..-.+++|.+..++.+.+++...++. .+=++|..|+||||+|+.+-+..
T Consensus 11 RPqtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaL 62 (830)
T PRK07003 11 RPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKAL 62 (830)
T ss_pred CCCcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3344578999999999999999876654 44589999999999998776644
No 260
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=82.95 E-value=0.6 Score=28.05 Aligned_cols=18 Identities=17% Similarity=0.479 Sum_probs=14.0
Q ss_pred ccCccEEEeecCcccccc
Q 003090 674 LHNLKKVRVEECDELRQV 691 (848)
Q Consensus 674 l~~L~~L~i~~C~~L~~~ 691 (848)
+++|+.|+|++|+++++.
T Consensus 1 c~~L~~L~l~~C~~itD~ 18 (26)
T smart00367 1 CPNLRELDLSGCTNITDE 18 (26)
T ss_pred CCCCCEeCCCCCCCcCHH
Confidence 467888888888888763
No 261
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=82.94 E-value=2 Score=45.05 Aligned_cols=27 Identities=22% Similarity=0.373 Sum_probs=22.7
Q ss_pred CCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 176 ENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 176 ~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
+.-..|.++|+.|.||||+++.+....
T Consensus 131 ~~~~~I~l~G~~GsGKStvg~~La~~L 157 (309)
T PRK08154 131 ARRRRIALIGLRGAGKSTLGRMLAARL 157 (309)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 344689999999999999999987653
No 262
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=82.88 E-value=1.7 Score=49.72 Aligned_cols=52 Identities=17% Similarity=0.313 Sum_probs=42.3
Q ss_pred cCCcccccccchhHHHHHHHHHHhcCCcc-EEEEEeCCCCchhHHHHHHHHHH
Q 003090 151 SSSEGVYAFKSRESTMKDIMEAMKDENVS-ITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 151 ~~~~~~~~~vG~~~~~~~i~~~L~~~~~~-vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
+.|..-.+++|.+..++.+..++....+. -+=++|..|+||||+|+.+-+..
T Consensus 18 yRP~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L 70 (598)
T PRK09111 18 YRPQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARAL 70 (598)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 34445678999999999999998866654 57789999999999999887654
No 263
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=82.85 E-value=3 Score=37.75 Aligned_cols=41 Identities=24% Similarity=0.250 Sum_probs=27.8
Q ss_pred EEEEeCCCCchhHHHHHHHHHHhhccccCcEEEEEeccCCchhHHH
Q 003090 181 TGICGMGGVGKTTLVKEIQKQAKEMKMFDDVAMAVVSQTPSITKIQ 226 (848)
Q Consensus 181 i~i~G~gG~GKTtla~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~ 226 (848)
|-++|..|+|||++|+.+..... ....-+.++...+...+.
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~-----~~~~~i~~~~~~~~~dl~ 42 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLG-----RPVIRINCSSDTTEEDLI 42 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHT-----CEEEEEE-TTTSTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhh-----cceEEEEeccccccccce
Confidence 45899999999999999987651 123334566656655554
No 264
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.81 E-value=1.8 Score=49.73 Aligned_cols=49 Identities=22% Similarity=0.320 Sum_probs=39.8
Q ss_pred cccccccchhHHHHHHHHHHhcCCccE-EEEEeCCCCchhHHHHHHHHHH
Q 003090 154 EGVYAFKSRESTMKDIMEAMKDENVSI-TGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 154 ~~~~~~vG~~~~~~~i~~~L~~~~~~v-i~i~G~gG~GKTtla~~v~~~~ 202 (848)
..-.+++|-+.-++.+.+++....+.. +=++|..|+||||+|+.+-+..
T Consensus 13 ~~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L 62 (620)
T PRK14954 13 SKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAV 62 (620)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHh
Confidence 345789999999998888887766644 6789999999999998877654
No 265
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=82.80 E-value=2.1 Score=46.17 Aligned_cols=48 Identities=19% Similarity=0.288 Sum_probs=39.8
Q ss_pred ccccccchhHHHHHHHHHHhcCCcc-EEEEEeCCCCchhHHHHHHHHHH
Q 003090 155 GVYAFKSRESTMKDIMEAMKDENVS-ITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 155 ~~~~~vG~~~~~~~i~~~L~~~~~~-vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
.-.+++|.+..++.+.+++...... .+=++|..|+||||+|+.+....
T Consensus 12 ~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l 60 (355)
T TIGR02397 12 TFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKAL 60 (355)
T ss_pred cHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3567899999999999999866654 45689999999999998887654
No 266
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=82.80 E-value=1.1 Score=42.93 Aligned_cols=34 Identities=21% Similarity=0.256 Sum_probs=26.6
Q ss_pred ccEEEEEeCCCCchhHHHHHHHHHHhhccccCcEEEE
Q 003090 178 VSITGICGMGGVGKTTLVKEIQKQAKEMKMFDDVAMA 214 (848)
Q Consensus 178 ~~vi~i~G~gG~GKTtla~~v~~~~~~~~~F~~~~wv 214 (848)
-.|+.|+|..|.||||+.+.+..-.... +..+|+
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~LE~~~---~G~I~i 61 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNGLEEPD---SGSITV 61 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCcCCC---CceEEE
Confidence 3689999999999999999998655433 346666
No 267
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=82.77 E-value=1.1 Score=43.49 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=21.5
Q ss_pred EEEEEeCCCCchhHHHHHHHHHHh
Q 003090 180 ITGICGMGGVGKTTLVKEIQKQAK 203 (848)
Q Consensus 180 vi~i~G~gG~GKTtla~~v~~~~~ 203 (848)
+|.|.|+.|+||||+++.+.+...
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~ 25 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLE 25 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999987764
No 268
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=82.57 E-value=2.2 Score=45.43 Aligned_cols=25 Identities=36% Similarity=0.441 Sum_probs=21.5
Q ss_pred ccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 178 VSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 178 ~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
..+|.++|.+|+||||++..+....
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L 265 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQF 265 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHH
Confidence 4789999999999999998887544
No 269
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=82.54 E-value=1.7 Score=40.09 Aligned_cols=35 Identities=23% Similarity=0.509 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhcCCccEEEEEeCCCCchhHHHHHHHHH
Q 003090 164 STMKDIMEAMKDENVSITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 164 ~~~~~i~~~L~~~~~~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
+.++++.+++.. +++.++|..|+||+||...+...
T Consensus 24 ~g~~~l~~~l~~---k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 24 EGIEELKELLKG---KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTHHHHHHHHTT---SEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCHHHHHHHhcC---CEEEEECCCCCCHHHHHHHHHhh
Confidence 346777777754 68899999999999999888754
No 270
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=82.48 E-value=1.1 Score=41.37 Aligned_cols=20 Identities=45% Similarity=0.699 Sum_probs=18.1
Q ss_pred EEEEEeCCCCchhHHHHHHH
Q 003090 180 ITGICGMGGVGKTTLVKEIQ 199 (848)
Q Consensus 180 vi~i~G~gG~GKTtla~~v~ 199 (848)
.|.|.|-.|+||||.++.+-
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58899999999999998876
No 271
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=82.38 E-value=1.2 Score=42.28 Aligned_cols=24 Identities=21% Similarity=0.257 Sum_probs=21.7
Q ss_pred cEEEEEeCCCCchhHHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
.++.++|..|.||||+++.+....
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l 27 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALF 27 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhc
Confidence 478999999999999999999765
No 272
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.36 E-value=1.7 Score=49.69 Aligned_cols=48 Identities=21% Similarity=0.348 Sum_probs=38.9
Q ss_pred cccccccchhHHHHHHHHHHhcCCcc-EEEEEeCCCCchhHHHHHHHHH
Q 003090 154 EGVYAFKSRESTMKDIMEAMKDENVS-ITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 154 ~~~~~~vG~~~~~~~i~~~L~~~~~~-vi~i~G~gG~GKTtla~~v~~~ 201 (848)
..-.++||-+.-++.+.+++..+.+. .+=++|..|+||||+|+.+-+.
T Consensus 13 ~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~ 61 (618)
T PRK14951 13 RSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKS 61 (618)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34567899999888888888877664 4578999999999999888543
No 273
>PLN02796 D-glycerate 3-kinase
Probab=82.28 E-value=1.1 Score=46.82 Aligned_cols=27 Identities=33% Similarity=0.336 Sum_probs=23.0
Q ss_pred CccEEEEEeCCCCchhHHHHHHHHHHh
Q 003090 177 NVSITGICGMGGVGKTTLVKEIQKQAK 203 (848)
Q Consensus 177 ~~~vi~i~G~gG~GKTtla~~v~~~~~ 203 (848)
..-+|+|.|..|.||||+++.+.....
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~lL~ 125 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVYLFN 125 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHhc
Confidence 345799999999999999999987653
No 274
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=82.13 E-value=3.3 Score=44.17 Aligned_cols=51 Identities=18% Similarity=0.198 Sum_probs=41.8
Q ss_pred CCcccccccchhHHHHHHHHHHhcCCcc-EEEEEeCCCCchhHHHHHHHHHH
Q 003090 152 SSEGVYAFKSRESTMKDIMEAMKDENVS-ITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 152 ~~~~~~~~vG~~~~~~~i~~~L~~~~~~-vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
.|.+...++|-++....+...+...... .+=++|..|+||||+|..+-+..
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~L 69 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHI 69 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHH
Confidence 3445678999999999999999866654 47789999999999998887654
No 275
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=82.12 E-value=1.9 Score=48.16 Aligned_cols=48 Identities=19% Similarity=0.262 Sum_probs=37.8
Q ss_pred cccccchhHHHHHHHHHHh----------c---CCccEEEEEeCCCCchhHHHHHHHHHHh
Q 003090 156 VYAFKSRESTMKDIMEAMK----------D---ENVSITGICGMGGVGKTTLVKEIQKQAK 203 (848)
Q Consensus 156 ~~~~vG~~~~~~~i~~~L~----------~---~~~~vi~i~G~gG~GKTtla~~v~~~~~ 203 (848)
..+|.|.+..++++.+.+. . ...+-+=++|..|.|||++|+++++...
T Consensus 181 ~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~ 241 (512)
T TIGR03689 181 YADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLA 241 (512)
T ss_pred HHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhc
Confidence 4568899999998888764 1 1234577899999999999999998753
No 276
>PRK13946 shikimate kinase; Provisional
Probab=81.96 E-value=1.3 Score=42.53 Aligned_cols=24 Identities=21% Similarity=0.379 Sum_probs=21.3
Q ss_pred cEEEEEeCCCCchhHHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
+.|.++|+.|+||||+++.+.+..
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~L 34 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATML 34 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999998764
No 277
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=81.91 E-value=1.2 Score=42.13 Aligned_cols=23 Identities=39% Similarity=0.476 Sum_probs=20.4
Q ss_pred EEEEEeCCCCchhHHHHHHHHHH
Q 003090 180 ITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 180 vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
.|-|.|..|.||||+|+.+-+..
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47799999999999999998773
No 278
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=81.89 E-value=2 Score=46.49 Aligned_cols=25 Identities=32% Similarity=0.610 Sum_probs=22.4
Q ss_pred cEEEEEeCCCCchhHHHHHHHHHHh
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQAK 203 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~~~ 203 (848)
-+|+|+|..|.|||||+..+....+
T Consensus 6 ~~i~i~G~~gsGKTTl~~~l~~~l~ 30 (369)
T PRK14490 6 FEIAFCGYSGSGKTTLITALVRRLS 30 (369)
T ss_pred EEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 4899999999999999999997654
No 279
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=81.77 E-value=1.1 Score=26.77 Aligned_cols=23 Identities=35% Similarity=0.491 Sum_probs=18.5
Q ss_pred ccccceeecccCcCcccChHHHc
Q 003090 254 CPKLQALFLQENSPLAIPDRFFQ 276 (848)
Q Consensus 254 ~~~L~~L~l~~~~~~~~~~~~~~ 276 (848)
+++|++|++++|.+..+|..+|.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHcc
Confidence 36788899999988888887764
No 280
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=81.77 E-value=1.1 Score=26.77 Aligned_cols=23 Identities=35% Similarity=0.491 Sum_probs=18.5
Q ss_pred ccccceeecccCcCcccChHHHc
Q 003090 254 CPKLQALFLQENSPLAIPDRFFQ 276 (848)
Q Consensus 254 ~~~L~~L~l~~~~~~~~~~~~~~ 276 (848)
+++|++|++++|.+..+|..+|.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHcc
Confidence 36788899999988888887764
No 281
>PRK13236 nitrogenase reductase; Reviewed
Probab=81.75 E-value=1.2 Score=46.56 Aligned_cols=25 Identities=36% Similarity=0.623 Sum_probs=21.1
Q ss_pred cCCccEEEEEeCCCCchhHHHHHHH
Q 003090 175 DENVSITGICGMGGVGKTTLVKEIQ 199 (848)
Q Consensus 175 ~~~~~vi~i~G~gG~GKTtla~~v~ 199 (848)
+.+.+++.+.|=||+||||.|-.+-
T Consensus 3 ~~~~~~~~~~GKGGVGKTt~a~NLA 27 (296)
T PRK13236 3 DENIRQIAFYGKGGIGKSTTSQNTL 27 (296)
T ss_pred CcCceEEEEECCCcCCHHHHHHHHH
Confidence 5677999999999999999876544
No 282
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=81.72 E-value=11 Score=41.25 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=20.7
Q ss_pred CccEEEEEeCCCCchhHHHHHHHHH
Q 003090 177 NVSITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 177 ~~~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
...++-++|..|+||||.|..+...
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~ 122 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYY 122 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHH
Confidence 3578999999999999997766554
No 283
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=81.69 E-value=1.2 Score=44.20 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=21.0
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.+++|+|..|.|||||++.+...
T Consensus 31 ~~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 31 EFVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCC
Confidence 68999999999999999999854
No 284
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=81.64 E-value=1.2 Score=39.98 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=20.3
Q ss_pred cEEEEEeCCCCchhHHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
+.|-++|-.|.|||||+|.+....
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~ 25 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEE 25 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCC
Confidence 357789999999999999998643
No 285
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.63 E-value=3 Score=44.76 Aligned_cols=38 Identities=26% Similarity=0.304 Sum_probs=29.8
Q ss_pred cCCccEEEEEeCCCCchhH-HHHHHHHHHhhccccCcEEEE
Q 003090 175 DENVSITGICGMGGVGKTT-LVKEIQKQAKEMKMFDDVAMA 214 (848)
Q Consensus 175 ~~~~~vi~i~G~gG~GKTt-la~~v~~~~~~~~~F~~~~wv 214 (848)
.....||.+||-.||||+| ||+-.|.-. ++.|...+-.
T Consensus 375 ~krPYVi~fvGVNGVGKSTNLAKIayWLl--qNkfrVLIAA 413 (587)
T KOG0781|consen 375 RKRPYVISFVGVNGVGKSTNLAKIAYWLL--QNKFRVLIAA 413 (587)
T ss_pred cCCCeEEEEEeecCccccchHHHHHHHHH--hCCceEEEEe
Confidence 5678899999999999977 999999876 4556554433
No 286
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=81.59 E-value=28 Score=34.21 Aligned_cols=46 Identities=22% Similarity=0.250 Sum_probs=35.7
Q ss_pred ccccchhHHHHHHHHHHh-------------cCCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 157 YAFKSRESTMKDIMEAMK-------------DENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 157 ~~~vG~~~~~~~i~~~L~-------------~~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
.++-|.|-.+++|.+... -+..+=|-.+|..|.|||.||++|.|+.
T Consensus 155 ~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t 213 (408)
T KOG0727|consen 155 ADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT 213 (408)
T ss_pred cccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhcc
Confidence 467788888888877654 1333456689999999999999999876
No 287
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=81.57 E-value=2.3 Score=47.53 Aligned_cols=51 Identities=22% Similarity=0.287 Sum_probs=40.7
Q ss_pred CCcccccccchhHHHHHHHHHHhcCCc-cEEEEEeCCCCchhHHHHHHHHHH
Q 003090 152 SSEGVYAFKSRESTMKDIMEAMKDENV-SITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 152 ~~~~~~~~vG~~~~~~~i~~~L~~~~~-~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
.|..-.+++|-+..+..+...+....+ ..+=++|..|+||||+|+.+.+..
T Consensus 16 RP~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~L 67 (507)
T PRK06645 16 RPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAV 67 (507)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 344457899999999888887776554 466789999999999999998765
No 288
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=81.57 E-value=1.1 Score=46.25 Aligned_cols=23 Identities=30% Similarity=0.579 Sum_probs=18.8
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
++|+|+|-||+||||++..+--.
T Consensus 2 ~~iav~gKGGVGKTT~a~nLA~~ 24 (273)
T PRK13232 2 RQIAIYGKGGIGKSTTTQNLTAA 24 (273)
T ss_pred CEEEEECCCCCcHHHHHHHHHHH
Confidence 57888899999999988766543
No 289
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=81.52 E-value=1.2 Score=43.87 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=21.0
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.+++|+|..|.|||||++.+...
T Consensus 28 ~~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 28 EFVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 68999999999999999999854
No 290
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=81.49 E-value=1.5 Score=42.44 Aligned_cols=24 Identities=38% Similarity=0.529 Sum_probs=21.1
Q ss_pred ccEEEEEeCCCCchhHHHHHHHHH
Q 003090 178 VSITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 178 ~~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
..++-|.|..|+||||+|+.+...
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~ 26 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARH 26 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 358899999999999999988865
No 291
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=81.48 E-value=1.2 Score=44.27 Aligned_cols=24 Identities=38% Similarity=0.538 Sum_probs=19.6
Q ss_pred cEEEEEeC-CCCchhHHHHHHHHHH
Q 003090 179 SITGICGM-GGVGKTTLVKEIQKQA 202 (848)
Q Consensus 179 ~vi~i~G~-gG~GKTtla~~v~~~~ 202 (848)
++|+|+|. ||+||||++-.+-.-.
T Consensus 2 ~~iai~s~kGGvG~TTltAnLA~aL 26 (243)
T PF06564_consen 2 KVIAIVSPKGGVGKTTLTANLAWAL 26 (243)
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHH
Confidence 57999998 8999999987766544
No 292
>PRK04182 cytidylate kinase; Provisional
Probab=81.41 E-value=1.4 Score=42.06 Aligned_cols=23 Identities=35% Similarity=0.512 Sum_probs=20.6
Q ss_pred EEEEEeCCCCchhHHHHHHHHHH
Q 003090 180 ITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 180 vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
+|.|.|+.|.||||+|+.+.+..
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l 24 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 68999999999999999997653
No 293
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=81.39 E-value=21 Score=42.03 Aligned_cols=25 Identities=28% Similarity=0.452 Sum_probs=20.9
Q ss_pred ccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 178 VSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 178 ~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
-.|+.++|..|+||||.+..+....
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~ 209 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARC 209 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhH
Confidence 3699999999999999887777544
No 294
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=81.39 E-value=2.3 Score=48.24 Aligned_cols=48 Identities=23% Similarity=0.369 Sum_probs=40.1
Q ss_pred ccccccchhHHHHHHHHHHhcCCccE-EEEEeCCCCchhHHHHHHHHHH
Q 003090 155 GVYAFKSRESTMKDIMEAMKDENVSI-TGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 155 ~~~~~vG~~~~~~~i~~~L~~~~~~v-i~i~G~gG~GKTtla~~v~~~~ 202 (848)
.-.+++|-+.-++.+..++..+.+.. +=++|..|+||||+|+.+-+..
T Consensus 14 ~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l 62 (527)
T PRK14969 14 SFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSL 62 (527)
T ss_pred cHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 35679999999999999998777654 4689999999999999887654
No 295
>PRK14530 adenylate kinase; Provisional
Probab=81.38 E-value=1.4 Score=43.58 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=20.2
Q ss_pred EEEEEeCCCCchhHHHHHHHHHH
Q 003090 180 ITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 180 vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
.|.|+|+.|+||||+|+.+....
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68899999999999999997554
No 296
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=81.38 E-value=1.1 Score=46.37 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=18.6
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.+|+|+|=||+||||++-.+-..
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~ 24 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAA 24 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHH
Confidence 47899999999999987665543
No 297
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=81.35 E-value=2.1 Score=45.17 Aligned_cols=47 Identities=19% Similarity=0.231 Sum_probs=37.9
Q ss_pred ccccccchhHHHHHHHHHHhcCCccEEEEEeCCCCchhHHHHHHHHH
Q 003090 155 GVYAFKSRESTMKDIMEAMKDENVSITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 155 ~~~~~vG~~~~~~~i~~~L~~~~~~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.-..++|.++.++.+.-.+.+.+..-+=+.|..|.||||+|+.+-.-
T Consensus 6 ~f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~l 52 (334)
T PRK13407 6 PFSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAAL 52 (334)
T ss_pred CHHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHH
Confidence 34678999999988776665556566889999999999999988654
No 298
>PLN02348 phosphoribulokinase
Probab=81.32 E-value=1.4 Score=46.79 Aligned_cols=27 Identities=19% Similarity=0.478 Sum_probs=23.9
Q ss_pred CCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 176 ENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 176 ~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
+..-+|+|.|-.|.||||+|+.+.+..
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~L 73 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVF 73 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999998765
No 299
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=81.31 E-value=1.2 Score=44.01 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=18.3
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
++|+|.|-||+||||.+..+-..
T Consensus 1 ~~iav~gKGGvGKTt~~~nLA~~ 23 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLSAA 23 (212)
T ss_pred CEEEEECCCcCcHHHHHHHHHHH
Confidence 47899999999999987655433
No 300
>PLN02318 phosphoribulokinase/uridine kinase
Probab=81.29 E-value=1.7 Score=48.66 Aligned_cols=27 Identities=22% Similarity=0.585 Sum_probs=23.2
Q ss_pred cCCccEEEEEeCCCCchhHHHHHHHHH
Q 003090 175 DENVSITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 175 ~~~~~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.....+|+|.|..|.||||+|+.+...
T Consensus 62 ~~~riIIGIaGpSGSGKTTLAk~Lagl 88 (656)
T PLN02318 62 NDGIILVGVAGPSGAGKTVFTEKVLNF 88 (656)
T ss_pred CCCeEEEEEECCCCCcHHHHHHHHHhh
Confidence 345679999999999999999999754
No 301
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=81.26 E-value=1.3 Score=42.24 Aligned_cols=23 Identities=35% Similarity=0.531 Sum_probs=20.8
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.+++|+|..|.|||||++.+...
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 27 EIVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999743
No 302
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=81.21 E-value=1.2 Score=37.19 Aligned_cols=24 Identities=38% Similarity=0.603 Sum_probs=19.9
Q ss_pred EEEEEeCCCCchhHHHHHHHHHHh
Q 003090 180 ITGICGMGGVGKTTLVKEIQKQAK 203 (848)
Q Consensus 180 vi~i~G~gG~GKTtla~~v~~~~~ 203 (848)
++.+.|.+|+||||++..+-....
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~ 24 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALA 24 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
Confidence 467899999999999988876653
No 303
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=81.21 E-value=2.3 Score=48.43 Aligned_cols=50 Identities=14% Similarity=0.201 Sum_probs=41.1
Q ss_pred CcccccccchhHHHHHHHHHHhcCCccE-EEEEeCCCCchhHHHHHHHHHH
Q 003090 153 SEGVYAFKSRESTMKDIMEAMKDENVSI-TGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 153 ~~~~~~~vG~~~~~~~i~~~L~~~~~~v-i~i~G~gG~GKTtla~~v~~~~ 202 (848)
|..-.+++|-+.-++.+..++.+..+.. +=++|..|+||||+|+.+-+..
T Consensus 9 P~~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l 59 (584)
T PRK14952 9 PATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSL 59 (584)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3345789999999999999998777655 5689999999999998887654
No 304
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=81.00 E-value=1 Score=44.56 Aligned_cols=24 Identities=38% Similarity=0.499 Sum_probs=20.5
Q ss_pred cEEEEEeCCCCchhHHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
.-|.++|.+|+||||+...+..+.
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~ 29 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDE 29 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCc
Confidence 358899999999999998888654
No 305
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=80.91 E-value=1.5 Score=38.26 Aligned_cols=20 Identities=35% Similarity=0.566 Sum_probs=18.7
Q ss_pred EEEEeCCCCchhHHHHHHHH
Q 003090 181 TGICGMGGVGKTTLVKEIQK 200 (848)
Q Consensus 181 i~i~G~gG~GKTtla~~v~~ 200 (848)
|.++|..|+||||+...+.+
T Consensus 2 V~iiG~~~~GKSTlin~l~~ 21 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTG 21 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 78999999999999999985
No 306
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=80.90 E-value=1.3 Score=42.74 Aligned_cols=23 Identities=26% Similarity=0.515 Sum_probs=20.8
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.+++|+|..|.|||||.+.+...
T Consensus 19 e~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 19 EVLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999998754
No 307
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=80.89 E-value=1.2 Score=41.59 Aligned_cols=23 Identities=30% Similarity=0.484 Sum_probs=19.6
Q ss_pred EEEEEeCCCCchhHHHHHHHHHH
Q 003090 180 ITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 180 vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
.|.++|.+|+||||++..+....
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~ 24 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDE 24 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999998888543
No 308
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=80.89 E-value=1.3 Score=43.60 Aligned_cols=22 Identities=36% Similarity=0.570 Sum_probs=19.6
Q ss_pred cEEEEEeCCCCchhHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQK 200 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~ 200 (848)
..|+|+|..|+|||||.+.|--
T Consensus 30 EfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 30 EFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5799999999999999888763
No 309
>PRK15453 phosphoribulokinase; Provisional
Probab=80.87 E-value=1.6 Score=44.18 Aligned_cols=27 Identities=26% Similarity=0.423 Sum_probs=22.7
Q ss_pred CCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 176 ENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 176 ~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
....+|+|.|-.|.||||+|+.+....
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if 29 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIF 29 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 445799999999999999999887543
No 310
>PRK05439 pantothenate kinase; Provisional
Probab=80.87 E-value=1.3 Score=45.83 Aligned_cols=27 Identities=33% Similarity=0.366 Sum_probs=22.7
Q ss_pred CCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 176 ENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 176 ~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
...-+|+|.|..|+||||+|+.+....
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l 110 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALL 110 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 445689999999999999999887644
No 311
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=80.73 E-value=1.2 Score=41.76 Aligned_cols=22 Identities=23% Similarity=0.471 Sum_probs=18.7
Q ss_pred EEEEeCCCCchhHHHHHHHHHH
Q 003090 181 TGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 181 i~i~G~gG~GKTtla~~v~~~~ 202 (848)
|.++|..|+||||+|+.+-...
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4589999999999999887653
No 312
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=80.72 E-value=1.2 Score=45.91 Aligned_cols=27 Identities=26% Similarity=0.402 Sum_probs=22.2
Q ss_pred CccEEEEEeCCCCchhHHHHHHHHHHh
Q 003090 177 NVSITGICGMGGVGKTTLVKEIQKQAK 203 (848)
Q Consensus 177 ~~~vi~i~G~gG~GKTtla~~v~~~~~ 203 (848)
...++.++|..|+||||++..+.....
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~ 219 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFV 219 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 346999999999999999888776543
No 313
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=80.65 E-value=2.5 Score=45.42 Aligned_cols=46 Identities=20% Similarity=0.288 Sum_probs=37.3
Q ss_pred ccccchhHHHHHHHHHHhc--------------CCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 157 YAFKSRESTMKDIMEAMKD--------------ENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 157 ~~~vG~~~~~~~i~~~L~~--------------~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
..++|.++.++.+..++.. .....+-++|..|+||||+|+.+-...
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l 74 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999988887752 113578899999999999999998764
No 314
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=80.60 E-value=3.5 Score=39.92 Aligned_cols=41 Identities=22% Similarity=0.371 Sum_probs=30.2
Q ss_pred HHHHHHHHHhcCCccEEEEEeCCCCchhHHHHHHHHHHhhc
Q 003090 165 TMKDIMEAMKDENVSITGICGMGGVGKTTLVKEIQKQAKEM 205 (848)
Q Consensus 165 ~~~~i~~~L~~~~~~vi~i~G~gG~GKTtla~~v~~~~~~~ 205 (848)
+-.+.+..+...+-++..|.|.+|.||||+.+.+.......
T Consensus 5 ~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~ 45 (196)
T PF13604_consen 5 EQREAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEALEAA 45 (196)
T ss_dssp HHHHHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHHHhC
Confidence 34455565554454688899999999999999988766543
No 315
>PRK13948 shikimate kinase; Provisional
Probab=80.56 E-value=1.6 Score=41.54 Aligned_cols=26 Identities=23% Similarity=0.415 Sum_probs=22.1
Q ss_pred CccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 177 NVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 177 ~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
....|.++||.|+||||+++.+-+..
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~l 34 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRAL 34 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 34678899999999999999987653
No 316
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=80.50 E-value=2.6 Score=40.48 Aligned_cols=37 Identities=22% Similarity=0.155 Sum_probs=27.4
Q ss_pred HHHHHHHHHhcCCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 165 TMKDIMEAMKDENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 165 ~~~~i~~~L~~~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
+....++...... ..+.|+|..|.||||+++.+....
T Consensus 13 ~~~~~l~~~v~~g-~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 13 LQAAYLWLAVEAR-KNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred HHHHHHHHHHhCC-CEEEEECCCCCCHHHHHHHHHhhc
Confidence 3444555544444 689999999999999999887643
No 317
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=80.46 E-value=2.4 Score=48.67 Aligned_cols=49 Identities=20% Similarity=0.270 Sum_probs=39.9
Q ss_pred cccccccchhHHHHHHHHHHhcCCccE-EEEEeCCCCchhHHHHHHHHHH
Q 003090 154 EGVYAFKSRESTMKDIMEAMKDENVSI-TGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 154 ~~~~~~vG~~~~~~~i~~~L~~~~~~v-i~i~G~gG~GKTtla~~v~~~~ 202 (848)
..-.++||-+.-++.+...+....+.- +=++|..|+||||+|+.+.+..
T Consensus 13 ~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L 62 (647)
T PRK07994 13 QTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGL 62 (647)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 345789999999999888888776654 4689999999999999887654
No 318
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=80.46 E-value=1.4 Score=41.74 Aligned_cols=21 Identities=38% Similarity=0.553 Sum_probs=19.4
Q ss_pred cEEEEEeCCCCchhHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQ 199 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~ 199 (848)
.+++++|..|.|||||.+.+.
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 589999999999999999885
No 319
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=80.44 E-value=3.3 Score=44.37 Aligned_cols=51 Identities=18% Similarity=0.240 Sum_probs=41.1
Q ss_pred CCcccccccchhHHHHHHHHHHhcCCcc-EEEEEeCCCCchhHHHHHHHHHH
Q 003090 152 SSEGVYAFKSRESTMKDIMEAMKDENVS-ITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 152 ~~~~~~~~vG~~~~~~~i~~~L~~~~~~-vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
.|....+++|-+..++.+.+.+....+. .+=++|..|+||+|+|..+-+..
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~L 65 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFL 65 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 3445578999999999999999877665 47799999999999997766543
No 320
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=80.41 E-value=1.4 Score=43.97 Aligned_cols=22 Identities=45% Similarity=0.672 Sum_probs=20.5
Q ss_pred cEEEEEeCCCCchhHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQK 200 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~ 200 (848)
.+++|+|..|.|||||.+.+..
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 6899999999999999999885
No 321
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=80.41 E-value=1.4 Score=41.84 Aligned_cols=25 Identities=44% Similarity=0.585 Sum_probs=21.7
Q ss_pred CccEEEEEeCCCCchhHHHHHHHHH
Q 003090 177 NVSITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 177 ~~~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.-.+++|+|..|.|||||.+.+...
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 48 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQ 48 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcC
Confidence 3468999999999999999998754
No 322
>PRK06761 hypothetical protein; Provisional
Probab=80.32 E-value=1.5 Score=44.69 Aligned_cols=25 Identities=28% Similarity=0.376 Sum_probs=22.2
Q ss_pred cEEEEEeCCCCchhHHHHHHHHHHh
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQAK 203 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~~~ 203 (848)
.+|.|.|..|.||||+++.+.+...
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~ 28 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILS 28 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4789999999999999999997653
No 323
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=80.26 E-value=2.7 Score=45.20 Aligned_cols=47 Identities=21% Similarity=0.316 Sum_probs=36.8
Q ss_pred ccccchhHHHHHHHHHHhcC--------------CccEEEEEeCCCCchhHHHHHHHHHHh
Q 003090 157 YAFKSRESTMKDIMEAMKDE--------------NVSITGICGMGGVGKTTLVKEIQKQAK 203 (848)
Q Consensus 157 ~~~vG~~~~~~~i~~~L~~~--------------~~~vi~i~G~gG~GKTtla~~v~~~~~ 203 (848)
..++|.++.++.+.-.+... ..+.|-++|..|+|||++|+.+.....
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~ 72 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLAN 72 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999998887665521 125678999999999999999987653
No 324
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=80.23 E-value=1.4 Score=43.60 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=21.0
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.+++|+|..|.|||||++.+...
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 30 EMVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999864
No 325
>PRK05642 DNA replication initiation factor; Validated
Probab=80.18 E-value=3.3 Score=41.46 Aligned_cols=39 Identities=15% Similarity=0.210 Sum_probs=27.3
Q ss_pred CCccEEEEEeCCCCchhHHHHHHHHHHhhccccCcEEEEEe
Q 003090 176 ENVSITGICGMGGVGKTTLVKEIQKQAKEMKMFDDVAMAVV 216 (848)
Q Consensus 176 ~~~~vi~i~G~gG~GKTtla~~v~~~~~~~~~F~~~~wv~v 216 (848)
+....+-|+|-.|+|||.|++++.+....+. ..++++..
T Consensus 43 ~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~--~~v~y~~~ 81 (234)
T PRK05642 43 WTESLIYLWGKDGVGRSHLLQAACLRFEQRG--EPAVYLPL 81 (234)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHhCC--CcEEEeeH
Confidence 3346788999999999999999987653221 23455544
No 326
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=80.09 E-value=1.3 Score=45.54 Aligned_cols=24 Identities=29% Similarity=0.541 Sum_probs=19.2
Q ss_pred cEEEEEeCCCCchhHHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
++|+|+|-||+||||++-.+-...
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~~L 25 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAAL 25 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHHHH
Confidence 478888999999999887665443
No 327
>PRK08939 primosomal protein DnaI; Reviewed
Probab=80.03 E-value=19 Score=37.57 Aligned_cols=55 Identities=18% Similarity=0.199 Sum_probs=35.7
Q ss_pred chhHHHHHHHHHHhc----CCccEEEEEeCCCCchhHHHHHHHHHHhhccccCcEEEEEec
Q 003090 161 SRESTMKDIMEAMKD----ENVSITGICGMGGVGKTTLVKEIQKQAKEMKMFDDVAMAVVS 217 (848)
Q Consensus 161 G~~~~~~~i~~~L~~----~~~~vi~i~G~gG~GKTtla~~v~~~~~~~~~F~~~~wv~vs 217 (848)
++....+...+++.. ....-+-++|..|+|||.||.++.+....+ . -.+.+++++
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~-g-~~v~~~~~~ 193 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKK-G-VSSTLLHFP 193 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHc-C-CCEEEEEHH
Confidence 444445555555552 133568899999999999999999887422 2 234555554
No 328
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=79.90 E-value=1.3 Score=45.30 Aligned_cols=23 Identities=30% Similarity=0.637 Sum_probs=20.4
Q ss_pred EEEEEeCCCCchhHHHHHHHHHH
Q 003090 180 ITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 180 vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
+++|.|-.|.||||+++.+....
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll 23 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLF 23 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhh
Confidence 58999999999999999998654
No 329
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=79.84 E-value=1.4 Score=41.58 Aligned_cols=24 Identities=25% Similarity=0.279 Sum_probs=20.5
Q ss_pred cEEEEEeCCCCchhHHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
+.+.++|+.|.||||+|+.+-+..
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~l 26 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQAL 26 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 357889999999999999998654
No 330
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=79.72 E-value=1.5 Score=43.25 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=20.7
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.+++|+|..|.|||||++.+...
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 27 EFLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999998753
No 331
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=79.68 E-value=1.6 Score=43.15 Aligned_cols=25 Identities=40% Similarity=0.678 Sum_probs=22.2
Q ss_pred CCccEEEEEeCCCCchhHHHHHHHHH
Q 003090 176 ENVSITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 176 ~~~~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.. .+++|+|..|.|||||++.+...
T Consensus 22 ~~-e~~~i~G~nGsGKSTLl~~l~G~ 46 (214)
T cd03297 22 NE-EVTGIFGASGAGKSTLLRCIAGL 46 (214)
T ss_pred cc-eeEEEECCCCCCHHHHHHHHhCC
Confidence 45 89999999999999999998754
No 332
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=79.65 E-value=1.5 Score=44.08 Aligned_cols=23 Identities=39% Similarity=0.520 Sum_probs=20.9
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.+++|+|..|.|||||++.+...
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 27 EILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999854
No 333
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=79.60 E-value=1.5 Score=43.80 Aligned_cols=26 Identities=31% Similarity=0.399 Sum_probs=22.5
Q ss_pred CccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 177 NVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 177 ~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
.-.++++||-.|.||||+++.+..-.
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~ 63 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLE 63 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCc
Confidence 34689999999999999999998654
No 334
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=79.56 E-value=1.6 Score=47.31 Aligned_cols=27 Identities=30% Similarity=0.302 Sum_probs=23.9
Q ss_pred cCCccEEEEEeCCCCchhHHHHHHHHH
Q 003090 175 DENVSITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 175 ~~~~~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
..-...|.|+|..|.|||||++.+.+.
T Consensus 216 ~~~~~~IvI~G~~gsGKTTL~~~La~~ 242 (399)
T PRK08099 216 PFFVRTVAILGGESSGKSTLVNKLANI 242 (399)
T ss_pred hCCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 456788999999999999999998864
No 335
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=79.50 E-value=1.9 Score=39.55 Aligned_cols=23 Identities=35% Similarity=0.680 Sum_probs=19.7
Q ss_pred EEEEEeCCCCchhHHHHHHHHHH
Q 003090 180 ITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 180 vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
+++++|.+|+||||++..+....
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~~ 23 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITAL 23 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHHH
Confidence 47899999999999998887654
No 336
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=79.39 E-value=1.5 Score=41.09 Aligned_cols=21 Identities=33% Similarity=0.450 Sum_probs=17.2
Q ss_pred EEEEeCCCCchhHHHHHHHHH
Q 003090 181 TGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 181 i~i~G~gG~GKTtla~~v~~~ 201 (848)
|.|.|-.|.|||||++.+...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999998865
No 337
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=79.36 E-value=1.6 Score=43.17 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=20.8
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.+++|+|..|.|||||++.+...
T Consensus 29 ~~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 29 EFLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999998754
No 338
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=79.33 E-value=2.8 Score=40.31 Aligned_cols=33 Identities=18% Similarity=0.361 Sum_probs=23.7
Q ss_pred HHHHHHh-cCCccEEEEEeCCCCchhHHHHHHHH
Q 003090 168 DIMEAMK-DENVSITGICGMGGVGKTTLVKEIQK 200 (848)
Q Consensus 168 ~i~~~L~-~~~~~vi~i~G~gG~GKTtla~~v~~ 200 (848)
.+++.+. ......|.++|.+|+|||||...+..
T Consensus 8 ~~~~~~~~~~~~~ki~ilG~~~~GKStLi~~l~~ 41 (190)
T cd00879 8 NVLSSLGLYNKEAKILFLGLDNAGKTTLLHMLKD 41 (190)
T ss_pred HHHHHhhcccCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3444443 23345679999999999999988765
No 339
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=79.32 E-value=1.6 Score=43.39 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=20.9
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.+++|+|..|.|||||++.+...
T Consensus 31 ~~~~i~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 31 EFVALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999854
No 340
>PRK13768 GTPase; Provisional
Probab=79.25 E-value=2 Score=43.58 Aligned_cols=25 Identities=36% Similarity=0.418 Sum_probs=20.6
Q ss_pred cEEEEEeCCCCchhHHHHHHHHHHh
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQAK 203 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~~~ 203 (848)
.++.|.|.||+||||++..+.....
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~ 27 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLE 27 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHH
Confidence 4788999999999999887775543
No 341
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=79.25 E-value=1.4 Score=45.42 Aligned_cols=22 Identities=32% Similarity=0.540 Sum_probs=18.0
Q ss_pred cEEEEEeCCCCchhHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQK 200 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~ 200 (848)
++|+|+|-||+||||++-.+--
T Consensus 2 ~~iav~~KGGVGKTT~~~nLA~ 23 (274)
T PRK13235 2 RKVAIYGKGGIGKSTTTQNTVA 23 (274)
T ss_pred CEEEEeCCCCccHHHHHHHHHH
Confidence 5789999999999998765543
No 342
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=79.21 E-value=4.8 Score=39.15 Aligned_cols=50 Identities=22% Similarity=0.271 Sum_probs=33.5
Q ss_pred cEEEEEeCCCCchhHHHHHHHHHHhhccccCcEEEEEeccCCchhHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQAKEMKMFDDVAMAVVSQTPSITKIQYEIA 230 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~ 230 (848)
..|.|=|+-|+||||.++.++...+.+.. .++|..-.....+....++++
T Consensus 4 ~fI~iEGiDGaGKTT~~~~L~~~l~~~g~--~v~~trEP~~~~ige~iR~~l 53 (208)
T COG0125 4 MFIVIEGIDGAGKTTQAELLKERLEERGI--KVVLTREPGGTPIGEKIRELL 53 (208)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCC--eEEEEeCCCCChHHHHHHHHH
Confidence 46899999999999999999988765443 445544444333444444433
No 343
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=79.21 E-value=1.4 Score=45.43 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=18.6
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
++|+|+|-||+||||.|..+--.
T Consensus 3 ~vIav~~KGGVGKTT~a~nLA~~ 25 (275)
T PRK13233 3 RKIAIYGKGGIGKSTTTQNTAAA 25 (275)
T ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Confidence 58899999999999988765443
No 344
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=79.16 E-value=1.6 Score=43.33 Aligned_cols=24 Identities=38% Similarity=0.570 Sum_probs=21.4
Q ss_pred cEEEEEeCCCCchhHHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
.+++|+|..|.|||||++.+....
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 29 EIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999998643
No 345
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=79.14 E-value=1.6 Score=42.39 Aligned_cols=24 Identities=38% Similarity=0.516 Sum_probs=21.4
Q ss_pred cEEEEEeCCCCchhHHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
.+++|+|..|.|||||++.+....
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 27 AITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 589999999999999999998643
No 346
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=79.10 E-value=1.4 Score=45.87 Aligned_cols=19 Identities=47% Similarity=0.670 Sum_probs=17.0
Q ss_pred cEEEEEeCCCCchhHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKE 197 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~ 197 (848)
+++-+.|.|||||||.|-+
T Consensus 3 riv~f~GKGGVGKTT~aaA 21 (322)
T COG0003 3 RIVFFTGKGGVGKTTIAAA 21 (322)
T ss_pred EEEEEecCCcccHHHHHHH
Confidence 5788999999999999876
No 347
>PRK06851 hypothetical protein; Provisional
Probab=79.09 E-value=37 Score=36.29 Aligned_cols=39 Identities=31% Similarity=0.294 Sum_probs=28.2
Q ss_pred CCccEEEEEeCCCCchhHHHHHHHHHHhhccccCcEEEEE
Q 003090 176 ENVSITGICGMGGVGKTTLVKEIQKQAKEMKMFDDVAMAV 215 (848)
Q Consensus 176 ~~~~vi~i~G~gG~GKTtla~~v~~~~~~~~~F~~~~wv~ 215 (848)
.--+++-|-|..|+||||+++.+......+ .++...+-|
T Consensus 212 ~~~~~~~i~G~pG~GKstl~~~i~~~a~~~-G~~v~~~hC 250 (367)
T PRK06851 212 GVKNRYFLKGRPGTGKSTMLKKIAKAAEER-GFDVEVYHC 250 (367)
T ss_pred ccceEEEEeCCCCCcHHHHHHHHHHHHHhC-CCeEEEEeC
Confidence 334679999999999999999999876533 344444333
No 348
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=79.09 E-value=6 Score=39.42 Aligned_cols=41 Identities=22% Similarity=0.512 Sum_probs=29.0
Q ss_pred HHHHHHHHHh--cCCccEEEEEeCCCCchhHHHHHHHHHHhhc
Q 003090 165 TMKDIMEAMK--DENVSITGICGMGGVGKTTLVKEIQKQAKEM 205 (848)
Q Consensus 165 ~~~~i~~~L~--~~~~~vi~i~G~gG~GKTtla~~v~~~~~~~ 205 (848)
...++++.+. ..+..+|+|.|.+|+||+||...+-.....+
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~ 56 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRER 56 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhc
Confidence 3455666665 3466799999999999999988777665433
No 349
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=79.07 E-value=1.8 Score=43.38 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=19.0
Q ss_pred EEeCCCCchhHHHHHHHHHHhhc
Q 003090 183 ICGMGGVGKTTLVKEIQKQAKEM 205 (848)
Q Consensus 183 i~G~gG~GKTtla~~v~~~~~~~ 205 (848)
|+|+.|.||||+.+.+.+.....
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~ 23 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESN 23 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhc
Confidence 68999999999999999876443
No 350
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=79.01 E-value=1.6 Score=42.98 Aligned_cols=23 Identities=39% Similarity=0.550 Sum_probs=20.9
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.+++|+|..|.|||||++.+...
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 27 EIFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999854
No 351
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=79.01 E-value=1.6 Score=42.71 Aligned_cols=23 Identities=39% Similarity=0.551 Sum_probs=21.0
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.+++|+|..|.|||||.+.+...
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 27 EIIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 68999999999999999999854
No 352
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=78.98 E-value=1.6 Score=43.49 Aligned_cols=24 Identities=33% Similarity=0.610 Sum_probs=21.4
Q ss_pred cEEEEEeCCCCchhHHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
.+++|+|..|.|||||++.+....
T Consensus 27 e~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 27 EITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 689999999999999999998543
No 353
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=78.96 E-value=1.9 Score=40.72 Aligned_cols=22 Identities=41% Similarity=0.563 Sum_probs=19.9
Q ss_pred EEEEEeCCCCchhHHHHHHHHH
Q 003090 180 ITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 180 vi~i~G~gG~GKTtla~~v~~~ 201 (848)
+|.|.|..|.||||+|+.+-+.
T Consensus 2 iI~i~G~~GSGKstia~~la~~ 23 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEK 23 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999998654
No 354
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=78.91 E-value=2.8 Score=40.14 Aligned_cols=35 Identities=23% Similarity=0.357 Sum_probs=25.6
Q ss_pred HHHHHHHHhc-CCccEEEEEeCCCCchhHHHHHHHH
Q 003090 166 MKDIMEAMKD-ENVSITGICGMGGVGKTTLVKEIQK 200 (848)
Q Consensus 166 ~~~i~~~L~~-~~~~vi~i~G~gG~GKTtla~~v~~ 200 (848)
+..+..++.. .....|.++|..|+||||+...+..
T Consensus 4 ~~~~~~~~~~~~~~~~i~ivG~~~~GKTsli~~l~~ 39 (184)
T smart00178 4 FYDILASLGLWNKHAKILFLGLDNAGKTTLLHMLKN 39 (184)
T ss_pred HHHHHHHhccccccCEEEEECCCCCCHHHHHHHHhc
Confidence 4566665532 3335788999999999999877653
No 355
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=78.83 E-value=2 Score=38.33 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=20.2
Q ss_pred cEEEEEeCCCCchhHHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
.-|-|.|-.|+||||+++.+-...
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~ 31 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKT 31 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHh
Confidence 457799999999999999988543
No 356
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=78.80 E-value=4 Score=41.33 Aligned_cols=60 Identities=23% Similarity=0.336 Sum_probs=38.6
Q ss_pred HHHHHHHh--cCCccEEEEEeCCCCchhHHHHHHHHHHhhccccCcEEEEEeccCCchhHHH
Q 003090 167 KDIMEAMK--DENVSITGICGMGGVGKTTLVKEIQKQAKEMKMFDDVAMAVVSQTPSITKIQ 226 (848)
Q Consensus 167 ~~i~~~L~--~~~~~vi~i~G~gG~GKTtla~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~ 226 (848)
.+++..+. .-+..+|+|.|.+|+||+|+...+-.......+==.++-|.-|..|.-..|.
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiL 99 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSIL 99 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCcccc
Confidence 45566555 5667799999999999999987776655444332223444445555444444
No 357
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=78.75 E-value=1.6 Score=43.04 Aligned_cols=23 Identities=39% Similarity=0.554 Sum_probs=20.7
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.+++|+|..|.|||||++.+.-.
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 26 EFLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHcCC
Confidence 58999999999999999998754
No 358
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=78.74 E-value=1.7 Score=43.44 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=21.5
Q ss_pred ccEEEEEeCCCCchhHHHHHHHHH
Q 003090 178 VSITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 178 ~~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
-.+++|+|..|.|||||++.+...
T Consensus 36 Ge~~~i~G~nGsGKSTLl~~i~Gl 59 (228)
T PRK10584 36 GETIALIGESGSGKSTLLAILAGL 59 (228)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcC
Confidence 368999999999999999999854
No 359
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=78.72 E-value=1.6 Score=41.66 Aligned_cols=21 Identities=38% Similarity=0.605 Sum_probs=19.0
Q ss_pred EEEEEeCCCCchhHHHHHHHH
Q 003090 180 ITGICGMGGVGKTTLVKEIQK 200 (848)
Q Consensus 180 vi~i~G~gG~GKTtla~~v~~ 200 (848)
+|+|.|+.|+||||+++.+.+
T Consensus 1 ii~itG~~gsGKst~~~~l~~ 21 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998875
No 360
>PHA02244 ATPase-like protein
Probab=78.69 E-value=4.5 Score=42.78 Aligned_cols=34 Identities=24% Similarity=0.375 Sum_probs=24.3
Q ss_pred HHHHHHHhcCCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 167 KDIMEAMKDENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 167 ~~i~~~L~~~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
..+..++. .+. -|-++|..|+|||++|+++....
T Consensus 110 ~ri~r~l~-~~~-PVLL~GppGtGKTtLA~aLA~~l 143 (383)
T PHA02244 110 ADIAKIVN-ANI-PVFLKGGAGSGKNHIAEQIAEAL 143 (383)
T ss_pred HHHHHHHh-cCC-CEEEECCCCCCHHHHHHHHHHHh
Confidence 34444443 333 35679999999999999998764
No 361
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=78.65 E-value=1.7 Score=42.14 Aligned_cols=22 Identities=36% Similarity=0.540 Sum_probs=19.8
Q ss_pred EEEEEeCCCCchhHHHHHHHHH
Q 003090 180 ITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 180 vi~i~G~gG~GKTtla~~v~~~ 201 (848)
+|.|.|+-|+||||+++.+.+.
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~ 22 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEH 22 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999875
No 362
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=78.59 E-value=1.8 Score=42.13 Aligned_cols=24 Identities=29% Similarity=0.520 Sum_probs=21.1
Q ss_pred ccEEEEEeCCCCchhHHHHHHHHH
Q 003090 178 VSITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 178 ~~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
-.+|+|+|..|.|||||.+.+..-
T Consensus 30 GE~VaiIG~SGaGKSTLLR~lngl 53 (258)
T COG3638 30 GEMVAIIGPSGAGKSTLLRSLNGL 53 (258)
T ss_pred CcEEEEECCCCCcHHHHHHHHhcc
Confidence 368999999999999999998753
No 363
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=78.57 E-value=2.5 Score=36.84 Aligned_cols=23 Identities=39% Similarity=0.605 Sum_probs=19.9
Q ss_pred EEEEeCCCCchhHHHHHHHHHHh
Q 003090 181 TGICGMGGVGKTTLVKEIQKQAK 203 (848)
Q Consensus 181 i~i~G~gG~GKTtla~~v~~~~~ 203 (848)
+.+.|.||+||||++..+.....
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~ 24 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLA 24 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999998887653
No 364
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=78.56 E-value=10 Score=41.73 Aligned_cols=44 Identities=23% Similarity=0.203 Sum_probs=30.9
Q ss_pred cccchhHHHHHHHHHHh--cCCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 158 AFKSRESTMKDIMEAMK--DENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 158 ~~vG~~~~~~~i~~~L~--~~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
.-+|.++.. .|.+-|. -+--+.|++||..|+||+||.+.+|-+.
T Consensus 395 v~F~y~~~~-~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl 440 (614)
T KOG0927|consen 395 VSFGYSDNP-MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDL 440 (614)
T ss_pred cccCCCCcc-hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcc
Confidence 345666554 4555544 2222679999999999999999999665
No 365
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=78.54 E-value=2 Score=39.08 Aligned_cols=43 Identities=30% Similarity=0.385 Sum_probs=30.2
Q ss_pred EEEEEeCCCCchhHHHHHHHHHHhhccccCcEEEEEeccCCchhHHHHHHHhccCC
Q 003090 180 ITGICGMGGVGKTTLVKEIQKQAKEMKMFDDVAMAVVSQTPSITKIQYEIAGWLDL 235 (848)
Q Consensus 180 vi~i~G~gG~GKTtla~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~~~l 235 (848)
+|.|-|..|.||||.|+.+-++...+ ++ +...+.+++++..++
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~---------~v----saG~iFR~~A~e~gm 44 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK---------LV----SAGTIFREMARERGM 44 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc---------ee----eccHHHHHHHHHcCC
Confidence 68899999999999999998765322 12 224566666665554
No 366
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=78.50 E-value=1.6 Score=43.74 Aligned_cols=23 Identities=22% Similarity=0.458 Sum_probs=20.4
Q ss_pred EEEEEeCCCCchhHHHHHHHHHH
Q 003090 180 ITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 180 vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
+|+|.|-.|.||||+++.+....
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l 23 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIF 23 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999888654
No 367
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=78.49 E-value=1.6 Score=42.27 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=20.3
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.+++|+|..|.||||+++.++--
T Consensus 23 g~~~i~G~nGsGKStll~al~~l 45 (197)
T cd03278 23 GLTAIVGPNGSGKSNIIDAIRWV 45 (197)
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999999743
No 368
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=78.45 E-value=1.7 Score=43.05 Aligned_cols=23 Identities=39% Similarity=0.585 Sum_probs=20.9
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.+++|+|..|.|||||.+.+...
T Consensus 27 e~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 27 EIFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999998854
No 369
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=78.45 E-value=1.9 Score=41.76 Aligned_cols=22 Identities=36% Similarity=0.522 Sum_probs=19.4
Q ss_pred cEEEEEeCCCCchhHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQK 200 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~ 200 (848)
.+|++.|+-|+||||.|+..-+
T Consensus 3 ~iIglTG~igsGKStva~~~~~ 24 (201)
T COG0237 3 LIIGLTGGIGSGKSTVAKILAE 24 (201)
T ss_pred eEEEEecCCCCCHHHHHHHHHH
Confidence 5899999999999999987654
No 370
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=78.39 E-value=1.7 Score=43.91 Aligned_cols=23 Identities=35% Similarity=0.595 Sum_probs=20.9
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.+++|+|..|.|||||++.+...
T Consensus 29 e~~~l~G~nGsGKSTLl~~l~Gl 51 (243)
T TIGR02315 29 EFVAIIGPSGAGKSTLLRCINRL 51 (243)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999998754
No 371
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=78.35 E-value=1.7 Score=43.60 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=20.8
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.+++|+|..|.|||||++.+.-.
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~ 50 (236)
T TIGR03864 28 EFVALLGPNGAGKSTLFSLLTRL 50 (236)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999754
No 372
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=78.29 E-value=4 Score=39.31 Aligned_cols=43 Identities=19% Similarity=0.196 Sum_probs=31.3
Q ss_pred cccccchhHHHHHHHHHHhcCCccEEEEEeCCCCchhHHHHHHHH
Q 003090 156 VYAFKSRESTMKDIMEAMKDENVSITGICGMGGVGKTTLVKEIQK 200 (848)
Q Consensus 156 ~~~~vG~~~~~~~i~~~L~~~~~~vi~i~G~gG~GKTtla~~v~~ 200 (848)
-.+|+|-+..+..+.-.... ..-+-++|..|+|||++|+.+-.
T Consensus 2 f~dI~GQe~aKrAL~iAAaG--~h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAAG--GHHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHHC--C--EEEES-CCCTHHHHHHHHHH
T ss_pred hhhhcCcHHHHHHHHHHHcC--CCCeEEECCCCCCHHHHHHHHHH
Confidence 35788988888766555543 35788999999999999998874
No 373
>PRK06835 DNA replication protein DnaC; Validated
Probab=78.28 E-value=58 Score=34.44 Aligned_cols=25 Identities=32% Similarity=0.247 Sum_probs=22.6
Q ss_pred cEEEEEeCCCCchhHHHHHHHHHHh
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQAK 203 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~~~ 203 (848)
..+-++|..|+|||.||.+|.+..-
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~ 208 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELL 208 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHH
Confidence 6789999999999999999998764
No 374
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=78.17 E-value=1.8 Score=42.37 Aligned_cols=24 Identities=33% Similarity=0.504 Sum_probs=21.4
Q ss_pred cEEEEEeCCCCchhHHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
.+++|+|..|.|||||.+.+....
T Consensus 28 e~~~l~G~nGsGKSTLl~~l~G~~ 51 (204)
T PRK13538 28 ELVQIEGPNGAGKTSLLRILAGLA 51 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999998643
No 375
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=78.16 E-value=1.6 Score=41.32 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=20.6
Q ss_pred ccEEEEEeCCCCchhHHHHHHHHH
Q 003090 178 VSITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 178 ~~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
...+.++|..|+|||||.+.+...
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcC
Confidence 356999999999999999988753
No 376
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=78.16 E-value=1.6 Score=42.94 Aligned_cols=22 Identities=36% Similarity=0.626 Sum_probs=20.3
Q ss_pred EEEEEeCCCCchhHHHHHHHHH
Q 003090 180 ITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 180 vi~i~G~gG~GKTtla~~v~~~ 201 (848)
+++|+|..|.|||||++.+...
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCC
Confidence 8999999999999999999854
No 377
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=78.14 E-value=1.8 Score=42.67 Aligned_cols=23 Identities=35% Similarity=0.388 Sum_probs=21.0
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.+++|+|..|.|||||.+.+...
T Consensus 14 e~~~l~G~NGsGKSTLlk~i~Gl 36 (213)
T PRK15177 14 EHIGILAAPGSGKTTLTRLLCGL 36 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999854
No 378
>PRK14527 adenylate kinase; Provisional
Probab=78.12 E-value=2.2 Score=41.26 Aligned_cols=26 Identities=19% Similarity=0.284 Sum_probs=22.2
Q ss_pred CccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 177 NVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 177 ~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
...+|-++|..|.||||+|+.+.+..
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999987654
No 379
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=78.08 E-value=1.8 Score=43.66 Aligned_cols=23 Identities=35% Similarity=0.531 Sum_probs=20.9
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.+++|+|..|.|||||++.+...
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl 51 (239)
T cd03296 29 ELVALLGPSGSGKTTLLRLIAGL 51 (239)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999854
No 380
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=78.06 E-value=1.8 Score=43.86 Aligned_cols=23 Identities=39% Similarity=0.621 Sum_probs=19.9
Q ss_pred EEEEeCCCCchhHHHHHHHHHHh
Q 003090 181 TGICGMGGVGKTTLVKEIQKQAK 203 (848)
Q Consensus 181 i~i~G~gG~GKTtla~~v~~~~~ 203 (848)
|-++|.+|+||||+|+.+.....
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~ 24 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLS 24 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999986553
No 381
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=77.99 E-value=2 Score=42.81 Aligned_cols=24 Identities=29% Similarity=0.520 Sum_probs=20.3
Q ss_pred cEEEEEeCCCCchhHHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
+.|+|+|-||+||+|.++.+-...
T Consensus 1 r~IAiYGKGGIGKST~~~Nlsaal 24 (273)
T PF00142_consen 1 RKIAIYGKGGIGKSTTASNLSAAL 24 (273)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEcCCCcccChhhhHHHHHH
Confidence 368999999999999998776544
No 382
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=77.96 E-value=1.6 Score=44.80 Aligned_cols=21 Identities=33% Similarity=0.653 Sum_probs=17.1
Q ss_pred EEEEEeCCCCchhHHHHHHHH
Q 003090 180 ITGICGMGGVGKTTLVKEIQK 200 (848)
Q Consensus 180 vi~i~G~gG~GKTtla~~v~~ 200 (848)
+|++.|=||+||||++-.+-.
T Consensus 2 ~i~~~gKGGVGKTT~~~nLA~ 22 (268)
T TIGR01281 2 ILAVYGKGGIGKSTTSSNLSV 22 (268)
T ss_pred EEEEEcCCcCcHHHHHHHHHH
Confidence 578889999999998766543
No 383
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=77.91 E-value=2 Score=41.17 Aligned_cols=27 Identities=22% Similarity=0.471 Sum_probs=23.4
Q ss_pred CCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 176 ENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 176 ~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
..-.++.++|..|.||||+|+.+....
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l 42 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKL 42 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 444699999999999999999998765
No 384
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=77.90 E-value=1.8 Score=43.67 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=20.8
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.+++|+|..|.|||||++.+...
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl 50 (241)
T cd03256 28 EFVALIGPSGAGKSTLLRCLNGL 50 (241)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999854
No 385
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=77.90 E-value=2 Score=44.08 Aligned_cols=27 Identities=26% Similarity=0.490 Sum_probs=21.9
Q ss_pred CCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 176 ENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 176 ~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
.+..++.++|.+|+||||.+..+....
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l 96 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKL 96 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 345799999999999999887776544
No 386
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=77.88 E-value=3.7 Score=45.52 Aligned_cols=48 Identities=19% Similarity=0.259 Sum_probs=39.7
Q ss_pred ccccccchhHHHHHHHHHHhcCCc-cEEEEEeCCCCchhHHHHHHHHHH
Q 003090 155 GVYAFKSRESTMKDIMEAMKDENV-SITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 155 ~~~~~vG~~~~~~~i~~~L~~~~~-~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
.-.+++|-+..++.+..++....+ ..+=++|..|+||||+|+.+-+..
T Consensus 15 ~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l 63 (451)
T PRK06305 15 TFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKAL 63 (451)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 457899999999999999987665 446789999999999998887644
No 387
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=77.85 E-value=2.4 Score=49.26 Aligned_cols=42 Identities=21% Similarity=0.475 Sum_probs=32.8
Q ss_pred ccccchhHHHHHHHHHHh--cCCccEEEEEeCCCCchhHHHHHHHH
Q 003090 157 YAFKSRESTMKDIMEAMK--DENVSITGICGMGGVGKTTLVKEIQK 200 (848)
Q Consensus 157 ~~~vG~~~~~~~i~~~L~--~~~~~vi~i~G~gG~GKTtla~~v~~ 200 (848)
.-++|||+++..+++.|. ..+-.| .+|-.|||||+++.-+..
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~KNNPv--LiGEpGVGKTAIvEGLA~ 213 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTKNNPV--LVGEPGVGKTAIVEGLAQ 213 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCCCCCe--EecCCCCCHHHHHHHHHH
Confidence 458999999999999998 233333 489999999998665553
No 388
>PRK00698 tmk thymidylate kinase; Validated
Probab=77.80 E-value=2.1 Score=41.88 Aligned_cols=25 Identities=24% Similarity=0.433 Sum_probs=22.1
Q ss_pred cEEEEEeCCCCchhHHHHHHHHHHh
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQAK 203 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~~~ 203 (848)
.+|.|.|..|+||||+++.+.+...
T Consensus 4 ~~I~ieG~~gsGKsT~~~~L~~~l~ 28 (205)
T PRK00698 4 MFITIEGIDGAGKSTQIELLKELLE 28 (205)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999987654
No 389
>PRK08356 hypothetical protein; Provisional
Probab=77.79 E-value=1.8 Score=41.95 Aligned_cols=20 Identities=40% Similarity=0.511 Sum_probs=18.6
Q ss_pred cEEEEEeCCCCchhHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEI 198 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v 198 (848)
.+|.++|+.|+||||+|+.+
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l 25 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFF 25 (195)
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999998
No 390
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=77.77 E-value=5 Score=40.70 Aligned_cols=53 Identities=30% Similarity=0.274 Sum_probs=38.3
Q ss_pred cEEEEEeCCCCchhHHHHHHHHHHhhcc----ccCcEEEEEeccCCchhHHHHHHHhc
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQAKEMK----MFDDVAMAVVSQTPSITKIQYEIAGW 232 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~l~~~i~~~ 232 (848)
.++-|+|..|.|||.++-.+.-...+.. .=..++|++-...|+..++.+ |.+.
T Consensus 39 ~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~-i~~~ 95 (256)
T PF08423_consen 39 SITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQ-IAER 95 (256)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHH-HHHH
T ss_pred cEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHH-Hhhc
Confidence 6899999999999999987765443322 123489999888899888865 4443
No 391
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=77.76 E-value=4.1 Score=39.92 Aligned_cols=47 Identities=17% Similarity=0.215 Sum_probs=36.5
Q ss_pred cccccchhHHHHHHHHHHh-------------cCCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 156 VYAFKSRESTMKDIMEAMK-------------DENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 156 ~~~~vG~~~~~~~i~~~L~-------------~~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
..++-|.|..++++++.+. -...+=+-.+|..|.|||-+|++.....
T Consensus 170 YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT 229 (424)
T KOG0652|consen 170 YSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQT 229 (424)
T ss_pred ccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhc
Confidence 4578899999999999876 1223446689999999999999877543
No 392
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=77.72 E-value=2 Score=41.74 Aligned_cols=27 Identities=37% Similarity=0.517 Sum_probs=23.0
Q ss_pred CccEEEEEeCCCCchhHHHHHHHHHHh
Q 003090 177 NVSITGICGMGGVGKTTLVKEIQKQAK 203 (848)
Q Consensus 177 ~~~vi~i~G~gG~GKTtla~~v~~~~~ 203 (848)
.-.+++++|-.|+||||+.+.|.-..+
T Consensus 28 ~Geiv~llG~NGaGKTTlLkti~Gl~~ 54 (237)
T COG0410 28 RGEIVALLGRNGAGKTTLLKTIMGLVR 54 (237)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 336899999999999999999986554
No 393
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=77.70 E-value=1.9 Score=42.84 Aligned_cols=24 Identities=33% Similarity=0.461 Sum_probs=21.4
Q ss_pred ccEEEEEeCCCCchhHHHHHHHHH
Q 003090 178 VSITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 178 ~~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
-.+++|+|..|.|||||.+.+...
T Consensus 31 G~~~~i~G~nGsGKSTLl~~i~G~ 54 (221)
T TIGR02211 31 GEIVAIVGSSGSGKSTLLHLLGGL 54 (221)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999854
No 394
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=77.69 E-value=1.5 Score=41.26 Aligned_cols=22 Identities=36% Similarity=0.484 Sum_probs=19.0
Q ss_pred EEEEEeCCCCchhHHHHHHHHH
Q 003090 180 ITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 180 vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.|.++|.+|+||||++..+.+.
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~ 23 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNK 23 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999888654
No 395
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=77.69 E-value=1.9 Score=43.15 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=20.8
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.+++|+|..|.|||||++.+...
T Consensus 12 e~~~i~G~nGsGKSTLl~~l~Gl 34 (230)
T TIGR01184 12 EFISLIGHSGCGKSTLLNLISGL 34 (230)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999998854
No 396
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=77.68 E-value=5.3 Score=40.54 Aligned_cols=51 Identities=24% Similarity=0.303 Sum_probs=35.2
Q ss_pred cEEEEEeCCCCchhHHHHHHHHHHhhccccC-cEEEEEeccCC-chhHHHHHHHh
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQAKEMKMFD-DVAMAVVSQTP-SITKIQYEIAG 231 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~~~~~~~F~-~~~wv~vs~~~-~~~~l~~~i~~ 231 (848)
.-++|+|-.|+|||||++.+++.... +|+ .++++.+.+.. .+.++..++.+
T Consensus 70 Qr~~If~~~G~GKTtLa~~i~~~i~~--~~~~~~V~~~iGer~~Ev~e~~~~~~~ 122 (274)
T cd01133 70 GKIGLFGGAGVGKTVLIMELINNIAK--AHGGYSVFAGVGERTREGNDLYHEMKE 122 (274)
T ss_pred CEEEEecCCCCChhHHHHHHHHHHHh--cCCCEEEEEEeccCcHHHHHHHHHHHh
Confidence 46899999999999999999988753 343 34555555543 34455555544
No 397
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=77.61 E-value=3 Score=39.51 Aligned_cols=33 Identities=18% Similarity=0.204 Sum_probs=23.9
Q ss_pred HHHHHHhcCCccEEEEEeCCCCchhHHHHHHHH
Q 003090 168 DIMEAMKDENVSITGICGMGGVGKTTLVKEIQK 200 (848)
Q Consensus 168 ~i~~~L~~~~~~vi~i~G~gG~GKTtla~~v~~ 200 (848)
.+.+++.......|.++|.+|+||||+...+..
T Consensus 5 ~~~~~~~~~~~~kv~~~G~~~~GKTsl~~~l~~ 37 (174)
T cd04153 5 SLWSLFFPRKEYKVIIVGLDNAGKTTILYQFLL 37 (174)
T ss_pred HHHHHhcCCCccEEEEECCCCCCHHHHHHHHcc
Confidence 344544333445788999999999999887764
No 398
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=77.57 E-value=1.7 Score=44.47 Aligned_cols=23 Identities=35% Similarity=0.602 Sum_probs=19.2
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
++|+|+|-||+||||++..+-..
T Consensus 3 ~~iav~~KGGvGKTT~a~nLA~~ 25 (264)
T PRK13231 3 KKIAIYGKGGIGKSTTVSNMAAA 25 (264)
T ss_pred eEEEEECCCCCcHHHHHHHHhcc
Confidence 57899999999999998776543
No 399
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=77.56 E-value=2.2 Score=41.49 Aligned_cols=23 Identities=30% Similarity=0.570 Sum_probs=20.6
Q ss_pred EEEEEeCCCCchhHHHHHHHHHH
Q 003090 180 ITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 180 vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
.+++.|..|.||||+.+.+.+..
T Consensus 3 ~i~i~G~~GsGKTTll~~l~~~l 25 (199)
T TIGR00101 3 KIGVAGPVGSGKTALIEALTRAL 25 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 58999999999999999998764
No 400
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=77.55 E-value=2 Score=46.04 Aligned_cols=26 Identities=31% Similarity=0.331 Sum_probs=22.2
Q ss_pred CccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 177 NVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 177 ~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
..-+|+|.|..|.||||+++.+....
T Consensus 211 ~PlIIGIsG~qGSGKSTLa~~L~~lL 236 (460)
T PLN03046 211 PPLVIGFSAPQGCGKTTLVFALDYLF 236 (460)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999996544
No 401
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=77.52 E-value=2 Score=39.24 Aligned_cols=24 Identities=38% Similarity=0.585 Sum_probs=21.2
Q ss_pred cEEEEEeCCCCchhHHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
.+++|+|..|.|||||++.+....
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCC
Confidence 689999999999999999987543
No 402
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=77.47 E-value=2 Score=44.93 Aligned_cols=21 Identities=43% Similarity=0.588 Sum_probs=17.4
Q ss_pred cEEEEEeCCCCchhHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQ 199 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~ 199 (848)
+++-+.|-||+||||+|-+.-
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A 22 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALA 22 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHH
Confidence 467889999999999985544
No 403
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=77.43 E-value=3.4 Score=38.37 Aligned_cols=37 Identities=22% Similarity=0.242 Sum_probs=26.0
Q ss_pred EEEEEeCCCCchhHHHHHHHHHHhhccccCcEEEEEecc
Q 003090 180 ITGICGMGGVGKTTLVKEIQKQAKEMKMFDDVAMAVVSQ 218 (848)
Q Consensus 180 vi~i~G~gG~GKTtla~~v~~~~~~~~~F~~~~wv~vs~ 218 (848)
++.|+|..|.||||+++.+...... .-..+.++....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~--~~~~v~~~~~e~ 37 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIAT--KGGKVVYVDIEE 37 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHh--cCCEEEEEECCc
Confidence 3679999999999999998766532 223455555443
No 404
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=77.39 E-value=1.9 Score=42.47 Aligned_cols=23 Identities=39% Similarity=0.541 Sum_probs=20.9
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.+++|+|..|.|||||++.+...
T Consensus 28 ~~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 28 EFVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999854
No 405
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=77.38 E-value=3.3 Score=39.63 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=21.7
Q ss_pred ccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 178 VSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 178 ~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
.+++-++|..|+||||+++.+....
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~ 26 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEF 26 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 3678899999999999999998754
No 406
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=77.31 E-value=1.9 Score=43.06 Aligned_cols=23 Identities=35% Similarity=0.560 Sum_probs=20.9
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.+++|+|..|.|||||.+.+...
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~G~ 54 (228)
T cd03257 32 ETLGLVGESGSGKSTLARAILGL 54 (228)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999998854
No 407
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=77.28 E-value=2.1 Score=39.27 Aligned_cols=25 Identities=44% Similarity=0.593 Sum_probs=21.0
Q ss_pred CccEEEEEeCCCCchhHHHHHHHHH
Q 003090 177 NVSITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 177 ~~~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.-.|++|||-.|.|||||...+-..
T Consensus 31 PGeVLgiVGESGSGKtTLL~~is~r 55 (258)
T COG4107 31 PGEVLGIVGESGSGKTTLLKCISGR 55 (258)
T ss_pred CCcEEEEEecCCCcHHhHHHHHhcc
Confidence 4468999999999999998877643
No 408
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=77.26 E-value=3.2 Score=49.46 Aligned_cols=51 Identities=14% Similarity=0.196 Sum_probs=41.5
Q ss_pred CCcccccccchhHHHHHHHHHHhcCCccE-EEEEeCCCCchhHHHHHHHHHH
Q 003090 152 SSEGVYAFKSRESTMKDIMEAMKDENVSI-TGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 152 ~~~~~~~~vG~~~~~~~i~~~L~~~~~~v-i~i~G~gG~GKTtla~~v~~~~ 202 (848)
.+....+|+|-+..++.+..++....+.. +=++|..|+||||+|+.+-+..
T Consensus 10 RP~~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L 61 (824)
T PRK07764 10 RPATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSL 61 (824)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 33445789999999999999998776654 6689999999999999887654
No 409
>PRK14738 gmk guanylate kinase; Provisional
Probab=77.24 E-value=2.2 Score=41.70 Aligned_cols=25 Identities=24% Similarity=0.478 Sum_probs=21.1
Q ss_pred CccEEEEEeCCCCchhHHHHHHHHH
Q 003090 177 NVSITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 177 ~~~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
....+.|+|..|+||||+++.+.+.
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhc
Confidence 3467889999999999999998753
No 410
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=77.22 E-value=4.4 Score=41.07 Aligned_cols=75 Identities=13% Similarity=0.088 Sum_probs=54.8
Q ss_pred cccCCcccccccchhHHHHHHHHHHhcCCccEEEEEeCCCCchhHHHHHHHHHHhhccccCcE-EEEEeccCCchh
Q 003090 149 IISSSEGVYAFKSRESTMKDIMEAMKDENVSITGICGMGGVGKTTLVKEIQKQAKEMKMFDDV-AMAVVSQTPSIT 223 (848)
Q Consensus 149 ~~~~~~~~~~~vG~~~~~~~i~~~L~~~~~~vi~i~G~gG~GKTtla~~v~~~~~~~~~F~~~-~wv~vs~~~~~~ 223 (848)
..+.|..-.+++|-+..++.+.+.+...+..+.=.+|..|.|||+.|.......--.+.|.++ .-.+.|..-.+.
T Consensus 28 eKYrPkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis 103 (346)
T KOG0989|consen 28 EKYRPKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS 103 (346)
T ss_pred HHhCCCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc
Confidence 345555667899999999999999988888899999999999999887776655434455443 334555544443
No 411
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=77.17 E-value=3.3 Score=41.08 Aligned_cols=35 Identities=31% Similarity=0.381 Sum_probs=27.2
Q ss_pred EEEEEeCCCCchhHHHHHHHHHHhhccccCcEEEEEe
Q 003090 180 ITGICGMGGVGKTTLVKEIQKQAKEMKMFDDVAMAVV 216 (848)
Q Consensus 180 vi~i~G~gG~GKTtla~~v~~~~~~~~~F~~~~wv~v 216 (848)
.+.|+|..|.||||+...+.... ...|+.+.+++-
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~--~~~f~~I~l~t~ 49 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYL--RHKFDHIFLITP 49 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhh--cccCCEEEEEec
Confidence 57899999999999999888654 567866665543
No 412
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=77.14 E-value=3.3 Score=49.34 Aligned_cols=46 Identities=22% Similarity=0.349 Sum_probs=36.7
Q ss_pred ccccchhHHHHHHHHHHhc---------CCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 157 YAFKSRESTMKDIMEAMKD---------ENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 157 ~~~vG~~~~~~~i~~~L~~---------~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
..++|-++.++.+.+.+.. ....++-++|..|+|||++|+.+....
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l 508 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL 508 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh
Confidence 4688999999888888761 123467899999999999999998654
No 413
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=77.12 E-value=2 Score=40.10 Aligned_cols=22 Identities=32% Similarity=0.489 Sum_probs=18.8
Q ss_pred EEEEEeCCCCchhHHHHHHHHH
Q 003090 180 ITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 180 vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.|.++|-+|+|||||++.+.+.
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~ 23 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQG 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999888653
No 414
>PTZ00494 tuzin-like protein; Provisional
Probab=77.04 E-value=40 Score=36.54 Aligned_cols=77 Identities=12% Similarity=0.090 Sum_probs=51.2
Q ss_pred CCcccccccchhHHHHHHHHHHh---cCCccEEEEEeCCCCchhHHHHHHHHHHhhccccCcEEEEEeccCCchhHHHHH
Q 003090 152 SSEGVYAFKSRESTMKDIMEAMK---DENVSITGICGMGGVGKTTLVKEIQKQAKEMKMFDDVAMAVVSQTPSITKIQYE 228 (848)
Q Consensus 152 ~~~~~~~~vG~~~~~~~i~~~L~---~~~~~vi~i~G~gG~GKTtla~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~ 228 (848)
.+......|.|+.+-.-+-+.|. ..-.+++.+.|..|.||++|-+..-.... -...+|.|...-| -.+.
T Consensus 366 a~a~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE~-----~paV~VDVRg~ED---tLrs 437 (664)
T PTZ00494 366 AAAAEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVEG-----VALVHVDVGGTED---TLRS 437 (664)
T ss_pred cccccccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHcC-----CCeEEEEecCCcc---hHHH
Confidence 34456778899887777777666 34457999999999999999877665442 2456676665433 3344
Q ss_pred HHhccCCC
Q 003090 229 IAGWLDLT 236 (848)
Q Consensus 229 i~~~~~l~ 236 (848)
|.+.++..
T Consensus 438 VVKALgV~ 445 (664)
T PTZ00494 438 VVRALGVS 445 (664)
T ss_pred HHHHhCCC
Confidence 55444443
No 415
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=77.02 E-value=4.9 Score=39.96 Aligned_cols=46 Identities=24% Similarity=0.221 Sum_probs=33.1
Q ss_pred ccEEEEEeCCCCchhHHHHHHHHHHhhccccCcEEEEEeccCCchhHHH
Q 003090 178 VSITGICGMGGVGKTTLVKEIQKQAKEMKMFDDVAMAVVSQTPSITKIQ 226 (848)
Q Consensus 178 ~~vi~i~G~gG~GKTtla~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~ 226 (848)
-+++-|+|.+|.|||++|.++...... .-..++|++.. .++..++.
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~~~--~~~~v~yi~~e-~~~~~r~~ 68 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEAAK--NGKKVIYIDTE-GLSPERFK 68 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEECC-CCCHHHHH
Confidence 368999999999999999888755432 23567888776 45555443
No 416
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=77.02 E-value=1.9 Score=43.51 Aligned_cols=23 Identities=39% Similarity=0.684 Sum_probs=20.9
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.+++|+|..|.|||||++.+...
T Consensus 26 e~~~i~G~NGsGKSTLlk~L~G~ 48 (246)
T cd03237 26 EVIGILGPNGIGKTTFIKMLAGV 48 (246)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999998754
No 417
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=77.00 E-value=2 Score=43.75 Aligned_cols=23 Identities=35% Similarity=0.434 Sum_probs=20.9
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.+++|+|..|.|||||++.+...
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl 50 (255)
T PRK11248 28 ELLVVLGPSGCGKTTLLNLIAGF 50 (255)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999854
No 418
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=76.99 E-value=2.4 Score=40.16 Aligned_cols=25 Identities=32% Similarity=0.481 Sum_probs=21.0
Q ss_pred cEEEEEeCCCCchhHHHHHHHHHHh
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQAK 203 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~~~ 203 (848)
.++.++|..|.||||++..+.....
T Consensus 1 ~~~~~~G~~G~GKTt~~~~la~~~~ 25 (173)
T cd03115 1 TVILLVGLQGVGKTTTAAKLALYLK 25 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3688999999999999988876543
No 419
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=76.98 E-value=2.7 Score=40.69 Aligned_cols=26 Identities=35% Similarity=0.433 Sum_probs=22.6
Q ss_pred cEEEEEeCCCCchhHHHHHHHHHHhh
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQAKE 204 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~~~~ 204 (848)
..|.|.|..|+||||+++.+.+....
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~~ 29 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQE 29 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 46899999999999999999877644
No 420
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=76.98 E-value=3.8 Score=41.77 Aligned_cols=43 Identities=19% Similarity=0.200 Sum_probs=31.5
Q ss_pred cchhHHHHHHHHHHhcCCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 160 KSRESTMKDIMEAMKDENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 160 vG~~~~~~~i~~~L~~~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
.|...+..+.+..+....-.++-|.|..|.||||+++.+.+..
T Consensus 62 lg~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l~all~~i 104 (264)
T cd01129 62 LGLKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSALSEL 104 (264)
T ss_pred cCCCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHhhh
Confidence 4665555555555555555789999999999999998776543
No 421
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=76.97 E-value=2 Score=42.01 Aligned_cols=23 Identities=35% Similarity=0.461 Sum_probs=20.9
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.+++|+|..|.|||||.+.+...
T Consensus 25 e~~~i~G~nGsGKSTLl~~l~G~ 47 (206)
T TIGR03608 25 KMYAIIGESGSGKSTLLNIIGLL 47 (206)
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999854
No 422
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=76.95 E-value=2 Score=43.04 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=21.0
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.+++|+|..|.|||||++.+...
T Consensus 36 e~~~l~G~nGsGKSTLl~~l~Gl 58 (233)
T PRK11629 36 EMMAIVGSSGSGKSTLLHLLGGL 58 (233)
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999854
No 423
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=76.87 E-value=2 Score=43.02 Aligned_cols=25 Identities=40% Similarity=0.571 Sum_probs=21.6
Q ss_pred ccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 178 VSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 178 ~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
-.+++|+|..|.|||||++.+....
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 31 GEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3689999999999999999997543
No 424
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=76.86 E-value=5.4 Score=46.06 Aligned_cols=74 Identities=15% Similarity=0.143 Sum_probs=52.2
Q ss_pred cccccchhHHHHHHHHHHhcCCccEEEEEeCCCCchhHHHHHHHHHHhhccccCcEEEEEeccCCchhHHHHHHHhcc
Q 003090 156 VYAFKSRESTMKDIMEAMKDENVSITGICGMGGVGKTTLVKEIQKQAKEMKMFDDVAMAVVSQTPSITKIQYEIAGWL 233 (848)
Q Consensus 156 ~~~~vG~~~~~~~i~~~L~~~~~~vi~i~G~gG~GKTtla~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~~ 233 (848)
..+++|.++.++.+...+... ..+-++|..|.||||+|+.+.+... ...|+...|..-+. .+...+.+.+....
T Consensus 30 ~~~vigq~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l~-~~~~~~~~~~~np~-~~~~~~~~~v~~~~ 103 (637)
T PRK13765 30 IDQVIGQEHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELLP-KEELQDILVYPNPE-DPNNPKIRTVPAGK 103 (637)
T ss_pred HHHcCChHHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHcC-hHhHHHheEeeCCC-cchHHHHHHHHHhc
Confidence 467899988888777766554 3688899999999999999886542 23467788875543 34455555555443
No 425
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=76.74 E-value=1.9 Score=44.84 Aligned_cols=24 Identities=29% Similarity=0.491 Sum_probs=19.8
Q ss_pred cEEEEEeCCCCchhHHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
++|+|+|-||+||||.|..+-.-.
T Consensus 1 ~vIav~gKGGvGKTT~a~nLA~~L 24 (296)
T TIGR02016 1 RIIAIYGKGGSGKSFTTTNLSHMM 24 (296)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999987766544
No 426
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=76.71 E-value=2.1 Score=44.85 Aligned_cols=27 Identities=30% Similarity=0.475 Sum_probs=22.9
Q ss_pred CccEEEEEeCCCCchhHHHHHHHHHHh
Q 003090 177 NVSITGICGMGGVGKTTLVKEIQKQAK 203 (848)
Q Consensus 177 ~~~vi~i~G~gG~GKTtla~~v~~~~~ 203 (848)
...++.++|..|+||||++..+.....
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~ 139 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYK 139 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 457999999999999999988876554
No 427
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=76.71 E-value=5.1 Score=39.84 Aligned_cols=49 Identities=22% Similarity=0.156 Sum_probs=33.7
Q ss_pred ccEEEEEeCCCCchhHHHHHHHHHHhhcc----ccCcEEEEEeccCCchhHHH
Q 003090 178 VSITGICGMGGVGKTTLVKEIQKQAKEMK----MFDDVAMAVVSQTPSITKIQ 226 (848)
Q Consensus 178 ~~vi~i~G~gG~GKTtla~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~l~ 226 (848)
-.++.|+|..|.|||+++..+.-...... .=..++|+.....++..++.
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~ 71 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLV 71 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHH
Confidence 36899999999999999988764432111 01456788777666665554
No 428
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=76.67 E-value=4.6 Score=45.42 Aligned_cols=61 Identities=18% Similarity=0.237 Sum_probs=44.7
Q ss_pred cCCcccccccchhHHHHHHHHHHhc-----CCccEEEEEeCCCCchhHHHHHHHHHHhhccccCcEEEEE
Q 003090 151 SSSEGVYAFKSRESTMKDIMEAMKD-----ENVSITGICGMGGVGKTTLVKEIQKQAKEMKMFDDVAMAV 215 (848)
Q Consensus 151 ~~~~~~~~~vG~~~~~~~i~~~L~~-----~~~~vi~i~G~gG~GKTtla~~v~~~~~~~~~F~~~~wv~ 215 (848)
+.|....+++.-+.-++++-.||.+ ...+++-+.|..|+||||.++.+.+.. .|+.+-|..
T Consensus 13 y~P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el----g~~v~Ew~n 78 (519)
T PF03215_consen 13 YAPKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL----GFEVQEWIN 78 (519)
T ss_pred cCCCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh----CCeeEEecC
Confidence 3444445566666677888888872 234688999999999999999988764 367777863
No 429
>PRK07933 thymidylate kinase; Validated
Probab=76.66 E-value=2.8 Score=41.19 Aligned_cols=26 Identities=27% Similarity=0.488 Sum_probs=22.8
Q ss_pred EEEEEeCCCCchhHHHHHHHHHHhhc
Q 003090 180 ITGICGMGGVGKTTLVKEIQKQAKEM 205 (848)
Q Consensus 180 vi~i~G~gG~GKTtla~~v~~~~~~~ 205 (848)
.|.|.|+-|+||||+++.+.+..+-+
T Consensus 2 ~IviEG~dGsGKST~~~~L~~~L~~~ 27 (213)
T PRK07933 2 LIAIEGVDGAGKRTLTEALRAALEAR 27 (213)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHC
Confidence 68999999999999999999877543
No 430
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=76.65 E-value=4.4 Score=42.38 Aligned_cols=29 Identities=31% Similarity=0.531 Sum_probs=24.0
Q ss_pred cCCccEEEEEeCCCCchhHHHHHHHHHHh
Q 003090 175 DENVSITGICGMGGVGKTTLVKEIQKQAK 203 (848)
Q Consensus 175 ~~~~~vi~i~G~gG~GKTtla~~v~~~~~ 203 (848)
.....+|+|+|.+|+||||++..+.....
T Consensus 31 ~~~~~~i~i~G~~G~GKttl~~~l~~~~~ 59 (300)
T TIGR00750 31 TGNAHRVGITGTPGAGKSTLLEALGMELR 59 (300)
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34567999999999999999988876543
No 431
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=76.60 E-value=2.4 Score=39.45 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=19.6
Q ss_pred EEEEEeCCCCchhHHHHHHHHHH
Q 003090 180 ITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 180 vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
.|-.+||-|+||||+.+++-+..
T Consensus 4 ~IvLiG~mGaGKSTIGr~LAk~L 26 (172)
T COG0703 4 NIVLIGFMGAGKSTIGRALAKAL 26 (172)
T ss_pred cEEEEcCCCCCHhHHHHHHHHHc
Confidence 46789999999999999997654
No 432
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=76.60 E-value=2 Score=42.20 Aligned_cols=21 Identities=29% Similarity=0.599 Sum_probs=19.5
Q ss_pred cEEEEEeCCCCchhHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQ 199 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~ 199 (848)
.+++|+|..|.||||+.+.+.
T Consensus 26 ~i~~ivGpNGaGKSTll~~i~ 46 (212)
T cd03274 26 SFSAIVGPNGSGKSNVIDSML 46 (212)
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 799999999999999998885
No 433
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=76.55 E-value=2.2 Score=41.54 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=21.7
Q ss_pred ccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 178 VSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 178 ~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
-.+++|+|..|.|||||.+.+....
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 26 GEALQVTGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3689999999999999999988643
No 434
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=76.54 E-value=2.1 Score=42.15 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=20.9
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.+++|+|..|.|||||++.+...
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03301 27 EFVVLLGPSGCGKTTTLRMIAGL 49 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999854
No 435
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=76.48 E-value=2.1 Score=39.86 Aligned_cols=22 Identities=27% Similarity=0.385 Sum_probs=18.9
Q ss_pred EEEEEeCCCCchhHHHHHHHHH
Q 003090 180 ITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 180 vi~i~G~gG~GKTtla~~v~~~ 201 (848)
-+.++|.+|+||||+++.+.+.
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~ 23 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVEN 23 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3679999999999999888754
No 436
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=76.43 E-value=2.2 Score=41.87 Aligned_cols=25 Identities=32% Similarity=0.327 Sum_probs=21.7
Q ss_pred ccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 178 VSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 178 ~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
-.+++|+|..|.|||||++.+....
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 28 GEALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3689999999999999999988643
No 437
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=76.43 E-value=11 Score=37.34 Aligned_cols=26 Identities=31% Similarity=0.456 Sum_probs=22.7
Q ss_pred ccEEEEEeCCCCchhHHHHHHHHHHh
Q 003090 178 VSITGICGMGGVGKTTLVKEIQKQAK 203 (848)
Q Consensus 178 ~~vi~i~G~gG~GKTtla~~v~~~~~ 203 (848)
...+-|+|..|+|||.|.+++++...
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~ 59 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQ 59 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHH
Confidence 34678999999999999999998764
No 438
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=76.37 E-value=2.1 Score=42.59 Aligned_cols=23 Identities=43% Similarity=0.609 Sum_probs=20.6
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.+++|+|..|.|||||++.+...
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl 49 (222)
T cd03224 27 EIVALLGRNGAGKTTLLKTIMGL 49 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999988744
No 439
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=76.36 E-value=2.2 Score=42.54 Aligned_cols=23 Identities=35% Similarity=0.481 Sum_probs=21.0
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.+++|+|..|.|||||++.+...
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~G~ 56 (225)
T PRK10247 34 EFKLITGPSGCGKSTLLKIVASL 56 (225)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 58999999999999999999864
No 440
>COG3899 Predicted ATPase [General function prediction only]
Probab=76.25 E-value=5.8 Score=47.82 Aligned_cols=46 Identities=24% Similarity=0.493 Sum_probs=38.4
Q ss_pred cccchhHHHHHHHHHHh---cCCccEEEEEeCCCCchhHHHHHHHHHHh
Q 003090 158 AFKSRESTMKDIMEAMK---DENVSITGICGMGGVGKTTLVKEIQKQAK 203 (848)
Q Consensus 158 ~~vG~~~~~~~i~~~L~---~~~~~vi~i~G~gG~GKTtla~~v~~~~~ 203 (848)
.++||+.+.+.+...+. .-.-.++.+.|..|+|||++++.|.+-..
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~ 49 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPIT 49 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHh
Confidence 37899999999988886 23335899999999999999999997654
No 441
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=76.21 E-value=2 Score=43.17 Aligned_cols=23 Identities=43% Similarity=0.593 Sum_probs=20.8
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.+++|+|..|.|||||++.+...
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~Gl 49 (236)
T cd03219 27 EIHGLIGPNGAGKTTLFNLISGF 49 (236)
T ss_pred cEEEEECCCCCCHHHHHHHHcCC
Confidence 58999999999999999999753
No 442
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=76.18 E-value=2.1 Score=42.79 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=21.4
Q ss_pred cEEEEEeCCCCchhHHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
.+++|+|..|.|||||++.+.-..
T Consensus 13 e~~~i~G~nGsGKSTLl~~l~Gl~ 36 (230)
T TIGR02770 13 EVLALVGESGSGKSLTCLAILGLL 36 (230)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 589999999999999999998543
No 443
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=76.16 E-value=3.1 Score=31.27 Aligned_cols=20 Identities=50% Similarity=0.695 Sum_probs=17.6
Q ss_pred EEEEEeCCCCchhHHHHHHH
Q 003090 180 ITGICGMGGVGKTTLVKEIQ 199 (848)
Q Consensus 180 vi~i~G~gG~GKTtla~~v~ 199 (848)
+..|.|-.|.||||+..++.
T Consensus 25 ~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 78999999999999986665
No 444
>PRK12377 putative replication protein; Provisional
Probab=76.15 E-value=5.7 Score=39.93 Aligned_cols=38 Identities=21% Similarity=0.194 Sum_probs=28.1
Q ss_pred ccEEEEEeCCCCchhHHHHHHHHHHhhccccCcEEEEEec
Q 003090 178 VSITGICGMGGVGKTTLVKEIQKQAKEMKMFDDVAMAVVS 217 (848)
Q Consensus 178 ~~vi~i~G~gG~GKTtla~~v~~~~~~~~~F~~~~wv~vs 217 (848)
...+-++|..|+|||+||.++.+....+ .-.+.++++.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~--g~~v~~i~~~ 138 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAK--GRSVIVVTVP 138 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEEEHH
Confidence 4578899999999999999999877432 2234555443
No 445
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=76.08 E-value=2.3 Score=41.48 Aligned_cols=25 Identities=36% Similarity=0.407 Sum_probs=21.8
Q ss_pred ccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 178 VSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 178 ~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
-.+++|+|..|.|||||.+.+....
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 27 GGLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3689999999999999999988643
No 446
>PRK14737 gmk guanylate kinase; Provisional
Probab=76.08 E-value=2.3 Score=40.74 Aligned_cols=24 Identities=21% Similarity=0.412 Sum_probs=21.1
Q ss_pred ccEEEEEeCCCCchhHHHHHHHHH
Q 003090 178 VSITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 178 ~~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
..+|-++|..|+||||+++.+.+.
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 357899999999999999999764
No 447
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=76.06 E-value=2.2 Score=43.06 Aligned_cols=23 Identities=35% Similarity=0.445 Sum_probs=20.9
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.+++|+|..|.|||||++.+.-.
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~ 50 (242)
T cd03295 28 EFLVLIGPSGSGKTTTMKMINRL 50 (242)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999854
No 448
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=75.89 E-value=2.4 Score=39.88 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=21.3
Q ss_pred cEEEEEeCCCCchhHHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
.+++|+|..|.|||||++.+....
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 589999999999999999998543
No 449
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=75.88 E-value=2.2 Score=43.38 Aligned_cols=23 Identities=26% Similarity=0.524 Sum_probs=20.9
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.+++|+|..|.|||||.+.+...
T Consensus 39 e~~~I~G~NGsGKSTLlk~l~Gl 61 (257)
T PRK11247 39 QFVAVVGRSGCGKSTLLRLLAGL 61 (257)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999854
No 450
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=75.87 E-value=2.4 Score=41.59 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=20.5
Q ss_pred cEEEEEeCCCCchhHHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
.+++|+|..|.|||||...+.--.
T Consensus 32 e~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 32 EFVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 589999999999999988777543
No 451
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=75.87 E-value=3.8 Score=38.51 Aligned_cols=34 Identities=24% Similarity=0.305 Sum_probs=27.1
Q ss_pred ccEEEEEeCCCCchhHHHHHHHHHHhhccccCcEEEE
Q 003090 178 VSITGICGMGGVGKTTLVKEIQKQAKEMKMFDDVAMA 214 (848)
Q Consensus 178 ~~vi~i~G~gG~GKTtla~~v~~~~~~~~~F~~~~wv 214 (848)
-.++-++|..|.||||+.+.+|...+.. ...+|+
T Consensus 28 Gef~fl~GpSGAGKSTllkLi~~~e~pt---~G~i~~ 61 (223)
T COG2884 28 GEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILV 61 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhhcCC---CceEEE
Confidence 3578899999999999999999877543 345665
No 452
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=75.85 E-value=4.2 Score=44.07 Aligned_cols=45 Identities=11% Similarity=0.192 Sum_probs=36.5
Q ss_pred ccccchhHHHHHHHHHHhcCC----------ccEEEEEeCCCCchhHHHHHHHHH
Q 003090 157 YAFKSRESTMKDIMEAMKDEN----------VSITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 157 ~~~vG~~~~~~~i~~~L~~~~----------~~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.+|+|-+.-++.+.+++..+. ..-+=++|..|+||||+|+.+...
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~ 59 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAA 59 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 568999999999999887653 234668999999999999888654
No 453
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=75.84 E-value=4.3 Score=46.89 Aligned_cols=49 Identities=20% Similarity=0.310 Sum_probs=39.8
Q ss_pred cccccccchhHHHHHHHHHHhcCCcc-EEEEEeCCCCchhHHHHHHHHHH
Q 003090 154 EGVYAFKSRESTMKDIMEAMKDENVS-ITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 154 ~~~~~~vG~~~~~~~i~~~L~~~~~~-vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
..-.+++|-+.-++.+..++....+. .+=++|..|+||||+|+.+.+..
T Consensus 13 ~~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l 62 (585)
T PRK14950 13 QTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAV 62 (585)
T ss_pred CCHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 34578999999999998888866654 34689999999999999887654
No 454
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=75.81 E-value=2.3 Score=41.57 Aligned_cols=22 Identities=36% Similarity=0.638 Sum_probs=19.9
Q ss_pred cEEEEEeCCCCchhHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQK 200 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~ 200 (848)
.++.|+|..|.|||||..+++-
T Consensus 23 g~~~i~G~NGsGKTTLl~ai~~ 44 (204)
T cd03240 23 PLTLIVGQNGAGKTTIIEALKY 44 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999863
No 455
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=75.78 E-value=2.3 Score=41.75 Aligned_cols=23 Identities=43% Similarity=0.508 Sum_probs=20.8
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.+++|+|..|.|||||.+.+.-.
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~Gl 49 (208)
T cd03268 27 EIYGFLGPNGAGKTTTMKIILGL 49 (208)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999854
No 456
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=75.75 E-value=7.4 Score=40.95 Aligned_cols=37 Identities=27% Similarity=0.530 Sum_probs=28.0
Q ss_pred HHHHHHHh--cCCccEEEEEeCCCCchhHHHHHHHHHHh
Q 003090 167 KDIMEAMK--DENVSITGICGMGGVGKTTLVKEIQKQAK 203 (848)
Q Consensus 167 ~~i~~~L~--~~~~~vi~i~G~gG~GKTtla~~v~~~~~ 203 (848)
..+++.+. .....+|+|.|..|+||||++..+....+
T Consensus 43 ~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~ 81 (332)
T PRK09435 43 QELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLI 81 (332)
T ss_pred HHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34555553 34567999999999999999998776554
No 457
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=75.72 E-value=2.4 Score=40.12 Aligned_cols=24 Identities=33% Similarity=0.376 Sum_probs=21.3
Q ss_pred cEEEEEeCCCCchhHHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
.+++|+|..|.|||||.+.+....
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc
Confidence 589999999999999999998643
No 458
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=75.71 E-value=2.3 Score=41.08 Aligned_cols=22 Identities=36% Similarity=0.631 Sum_probs=20.4
Q ss_pred cEEEEEeCCCCchhHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQK 200 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~ 200 (848)
.+++|+|..|.|||||++.+..
T Consensus 34 e~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 34 TLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 6899999999999999999884
No 459
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=75.70 E-value=2.3 Score=40.62 Aligned_cols=23 Identities=35% Similarity=0.619 Sum_probs=20.6
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.|++|+|..|.|||||.+.+.-+
T Consensus 28 ev~ailGPNGAGKSTlLk~LsGe 50 (259)
T COG4559 28 EVLAILGPNGAGKSTLLKALSGE 50 (259)
T ss_pred cEEEEECCCCccHHHHHHHhhCc
Confidence 68999999999999999888744
No 460
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=75.67 E-value=2.1 Score=43.98 Aligned_cols=22 Identities=27% Similarity=0.607 Sum_probs=17.8
Q ss_pred EEEEEeCCCCchhHHHHHHHHH
Q 003090 180 ITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 180 vi~i~G~gG~GKTtla~~v~~~ 201 (848)
+|++.|-||+||||.|-.+-..
T Consensus 2 ~i~v~gKGGvGKTT~a~nLA~~ 23 (267)
T cd02032 2 VLAVYGKGGIGKSTTSSNLSVA 23 (267)
T ss_pred EEEEecCCCCCHHHHHHHHHHH
Confidence 6889999999999987665443
No 461
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=75.64 E-value=1.2 Score=39.02 Aligned_cols=22 Identities=41% Similarity=0.582 Sum_probs=15.9
Q ss_pred EEEEeCCCCchhHHHHHHHHHH
Q 003090 181 TGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 181 i~i~G~gG~GKTtla~~v~~~~ 202 (848)
|=++|..|+||||+|+.+-...
T Consensus 2 vLleg~PG~GKT~la~~lA~~~ 23 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSL 23 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHT
T ss_pred EeeECCCccHHHHHHHHHHHHc
Confidence 3479999999999999998764
No 462
>PRK10908 cell division protein FtsE; Provisional
Probab=75.61 E-value=2.3 Score=42.22 Aligned_cols=24 Identities=33% Similarity=0.392 Sum_probs=21.2
Q ss_pred ccEEEEEeCCCCchhHHHHHHHHH
Q 003090 178 VSITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 178 ~~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
-.+++|+|..|.|||||.+.+.-.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (222)
T PRK10908 28 GEMAFLTGHSGAGKSTLLKLICGI 51 (222)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999753
No 463
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=75.54 E-value=4.2 Score=46.39 Aligned_cols=50 Identities=12% Similarity=0.288 Sum_probs=41.2
Q ss_pred CcccccccchhHHHHHHHHHHhcCCcc-EEEEEeCCCCchhHHHHHHHHHH
Q 003090 153 SEGVYAFKSRESTMKDIMEAMKDENVS-ITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 153 ~~~~~~~vG~~~~~~~i~~~L~~~~~~-vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
|..-.+++|-+.-++.+..++.+..+. .+=++|..|+||||+|+.+.+..
T Consensus 12 P~~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L 62 (563)
T PRK06647 12 PRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCL 62 (563)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 344578999999999999999876665 36689999999999999988654
No 464
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=75.43 E-value=2.3 Score=42.92 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=21.0
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.+++|+|..|.|||||++.+.-.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G~ 51 (242)
T PRK11124 29 ETLVLLGPSGAGKSSLLRVLNLL 51 (242)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999854
No 465
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=75.42 E-value=2.3 Score=39.40 Aligned_cols=21 Identities=33% Similarity=0.585 Sum_probs=18.4
Q ss_pred EEEEeCCCCchhHHHHHHHHH
Q 003090 181 TGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 181 i~i~G~gG~GKTtla~~v~~~ 201 (848)
|.|+|..|+||||+.+.+.+.
T Consensus 2 i~i~G~~~~GKTsli~~l~~~ 22 (160)
T cd00876 2 VVVLGAGGVGKSAITIQFVKG 22 (160)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999888653
No 466
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=75.40 E-value=2.2 Score=43.15 Aligned_cols=24 Identities=29% Similarity=0.621 Sum_probs=21.0
Q ss_pred ccEEEEEeCCCCchhHHHHHHHHH
Q 003090 178 VSITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 178 ~~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
-.+++|+|..|.|||||++.+.-.
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (247)
T TIGR00972 27 NQVTALIGPSGCGKSTLLRSLNRM 50 (247)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 368999999999999999998743
No 467
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=75.39 E-value=3 Score=43.62 Aligned_cols=47 Identities=21% Similarity=0.171 Sum_probs=34.0
Q ss_pred ccccchhHHHHHHHHHHh------------cCCccEEEEEeCCCCchhHHHHHHHHHHh
Q 003090 157 YAFKSRESTMKDIMEAMK------------DENVSITGICGMGGVGKTTLVKEIQKQAK 203 (848)
Q Consensus 157 ~~~vG~~~~~~~i~~~L~------------~~~~~vi~i~G~gG~GKTtla~~v~~~~~ 203 (848)
.+|.|..+.++-+.+... -...+-|-.+|..|.|||-||++|+....
T Consensus 212 ~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~ 270 (491)
T KOG0738|consen 212 DDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECG 270 (491)
T ss_pred HhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhc
Confidence 346666666665555543 23445677899999999999999998764
No 468
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=75.36 E-value=2.3 Score=42.02 Aligned_cols=23 Identities=35% Similarity=0.593 Sum_probs=20.8
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.+++|+|..|.|||||.+.+...
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl 54 (218)
T cd03266 32 EVTGLLGPNGAGKTTTLRMLAGL 54 (218)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999754
No 469
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=75.35 E-value=3.1 Score=41.06 Aligned_cols=25 Identities=40% Similarity=0.611 Sum_probs=21.7
Q ss_pred cEEEEEeCCCCchhHHHHHHHHHHh
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQAK 203 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~~~ 203 (848)
++++|+|..|+||||++..+....+
T Consensus 2 ~vi~ivG~~gsGKTtl~~~l~~~L~ 26 (229)
T PRK14494 2 RAIGVIGFKDSGKTTLIEKILKNLK 26 (229)
T ss_pred eEEEEECCCCChHHHHHHHHHHHHH
Confidence 5799999999999999988886654
No 470
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=75.34 E-value=2.1 Score=39.95 Aligned_cols=20 Identities=25% Similarity=0.581 Sum_probs=18.1
Q ss_pred EEEEeCCCCchhHHHHHHHH
Q 003090 181 TGICGMGGVGKTTLVKEIQK 200 (848)
Q Consensus 181 i~i~G~gG~GKTtla~~v~~ 200 (848)
|+++|..|+|||||...+.+
T Consensus 2 i~l~G~~g~GKTtL~~~l~~ 21 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTN 21 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhc
Confidence 68999999999999988873
No 471
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=75.32 E-value=2.3 Score=41.54 Aligned_cols=24 Identities=25% Similarity=0.433 Sum_probs=21.3
Q ss_pred cEEEEEeCCCCchhHHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
.+++|+|..|.|||||++.+....
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~G~~ 57 (202)
T cd03233 34 EMVLVLGRPGSGCSTLLKALANRT 57 (202)
T ss_pred cEEEEECCCCCCHHHHHHHhcccC
Confidence 689999999999999999987543
No 472
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=75.32 E-value=2.3 Score=39.72 Aligned_cols=21 Identities=29% Similarity=0.398 Sum_probs=18.5
Q ss_pred EEEEeCCCCchhHHHHHHHHH
Q 003090 181 TGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 181 i~i~G~gG~GKTtla~~v~~~ 201 (848)
|.++|.+|+||||+...+.+.
T Consensus 3 i~~vG~~~vGKTsli~~l~~~ 23 (168)
T cd04119 3 VISMGNSGVGKSCIIKRYCEG 23 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 679999999999999888754
No 473
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=75.32 E-value=2.4 Score=43.06 Aligned_cols=23 Identities=35% Similarity=0.509 Sum_probs=21.0
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.+++|+|..|.|||||++.+...
T Consensus 31 e~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 31 KILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999854
No 474
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=75.30 E-value=2.3 Score=43.11 Aligned_cols=23 Identities=26% Similarity=0.538 Sum_probs=20.6
Q ss_pred ccEEEEEeCCCCchhHHHHHHHH
Q 003090 178 VSITGICGMGGVGKTTLVKEIQK 200 (848)
Q Consensus 178 ~~vi~i~G~gG~GKTtla~~v~~ 200 (848)
-.+++|+|..|.|||||++.+.-
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14245 29 KSVVAFIGPSGCGKSTFLRLFNR 51 (250)
T ss_pred CCEEEEECCCCCCHHHHHHHHhh
Confidence 36899999999999999999974
No 475
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=75.30 E-value=2.5 Score=40.06 Aligned_cols=23 Identities=48% Similarity=0.632 Sum_probs=20.8
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.+++|+|..|.|||||.+.+...
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~ 49 (173)
T cd03230 27 EIYGLLGPNGAGKTTLIKIILGL 49 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999998754
No 476
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=75.24 E-value=2.2 Score=39.15 Aligned_cols=22 Identities=32% Similarity=0.386 Sum_probs=18.9
Q ss_pred EEEEEeCCCCchhHHHHHHHHH
Q 003090 180 ITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 180 vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.|.++|..|+||||+...+...
T Consensus 3 ki~~~G~~~~GKstl~~~l~~~ 24 (161)
T TIGR00231 3 KIVIVGDPNVGKSTLLNRLLGN 24 (161)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999887643
No 477
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=75.24 E-value=2.5 Score=42.87 Aligned_cols=25 Identities=24% Similarity=0.470 Sum_probs=21.9
Q ss_pred CccEEEEEeCCCCchhHHHHHHHHH
Q 003090 177 NVSITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 177 ~~~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
+..+++|+|..|.||||++.+++--
T Consensus 24 ~~~~~~IvG~NGsGKStll~Ai~~l 48 (251)
T cd03273 24 DPQFNAITGLNGSGKSNILDAICFV 48 (251)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999854
No 478
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=75.22 E-value=2.4 Score=42.50 Aligned_cols=23 Identities=39% Similarity=0.475 Sum_probs=20.8
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.+++|+|..|.|||||.+.+...
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~Gl 49 (232)
T cd03218 27 EIVGLLGPNGAGKTTTFYMIVGL 49 (232)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999854
No 479
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=75.21 E-value=2.2 Score=39.75 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=19.1
Q ss_pred EEEEEeCCCCchhHHHHHHHHH
Q 003090 180 ITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 180 vi~i~G~gG~GKTtla~~v~~~ 201 (848)
-|.++|..|+||||+++.+.+.
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~ 23 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDG 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999988754
No 480
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=75.17 E-value=2.7 Score=39.09 Aligned_cols=21 Identities=33% Similarity=0.572 Sum_probs=18.5
Q ss_pred EEEEeCCCCchhHHHHHHHHH
Q 003090 181 TGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 181 i~i~G~gG~GKTtla~~v~~~ 201 (848)
|.++|.+|+||||+.+.+.+.
T Consensus 2 i~vvG~~~vGKtsl~~~~~~~ 22 (162)
T PF00071_consen 2 IVVVGDSGVGKTSLINRLING 22 (162)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 679999999999999887764
No 481
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=75.15 E-value=2.3 Score=42.96 Aligned_cols=23 Identities=43% Similarity=0.602 Sum_probs=20.7
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.+++|+|..|.|||||.+.+...
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 27 EIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999998753
No 482
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=75.14 E-value=2.2 Score=39.26 Aligned_cols=21 Identities=38% Similarity=0.504 Sum_probs=18.5
Q ss_pred EEEEeCCCCchhHHHHHHHHH
Q 003090 181 TGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 181 i~i~G~gG~GKTtla~~v~~~ 201 (848)
|+++|..|+|||||.+.+...
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 689999999999999888654
No 483
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=75.12 E-value=2.4 Score=41.74 Aligned_cols=23 Identities=35% Similarity=0.485 Sum_probs=20.8
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.+++|+|..|.|||||.+.+.-.
T Consensus 27 ~~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03262 27 EVVVIIGPSGSGKSTLLRCINLL 49 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999854
No 484
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=75.10 E-value=4.1 Score=47.33 Aligned_cols=49 Identities=16% Similarity=0.263 Sum_probs=39.7
Q ss_pred CcccccccchhHHHHHHHHHHhcCCccE-EEEEeCCCCchhHHHHHHHHH
Q 003090 153 SEGVYAFKSRESTMKDIMEAMKDENVSI-TGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 153 ~~~~~~~vG~~~~~~~i~~~L~~~~~~v-i~i~G~gG~GKTtla~~v~~~ 201 (848)
|..-.+++|-+..++.+..++....+.- +=++|..|+||||+|+.+...
T Consensus 14 P~~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~ 63 (725)
T PRK07133 14 PKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANA 63 (725)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3345789999999999999998766554 457999999999999888654
No 485
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=75.09 E-value=2.5 Score=40.31 Aligned_cols=24 Identities=42% Similarity=0.639 Sum_probs=21.4
Q ss_pred cEEEEEeCCCCchhHHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
.+++|+|..|.|||||.+.+....
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999998643
No 486
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=75.08 E-value=2.2 Score=39.23 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=19.3
Q ss_pred EEEEeCCCCchhHHHHHHHHHH
Q 003090 181 TGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 181 i~i~G~gG~GKTtla~~v~~~~ 202 (848)
|.++|..|+||||+...+.+..
T Consensus 3 i~~~G~~~~GKStl~~~l~~~~ 24 (159)
T cd00154 3 IVLIGDSGVGKTSLLLRFVDGK 24 (159)
T ss_pred EEEECCCCCCHHHHHHHHHhCc
Confidence 7899999999999999887654
No 487
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=75.07 E-value=2.4 Score=41.74 Aligned_cols=24 Identities=38% Similarity=0.501 Sum_probs=21.6
Q ss_pred cEEEEEeCCCCchhHHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
.+++|+|..|.|||||++.+....
T Consensus 25 e~~~i~G~nGsGKSTLl~~l~G~~ 48 (213)
T TIGR01277 25 EIVAIMGPSGAGKSTLLNLIAGFI 48 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 689999999999999999998643
No 488
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=75.06 E-value=2.4 Score=43.11 Aligned_cols=23 Identities=26% Similarity=0.605 Sum_probs=20.9
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.+++|+|..|.|||||.+.+...
T Consensus 33 e~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 33 QVTALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 68999999999999999999854
No 489
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=75.04 E-value=5.1 Score=45.35 Aligned_cols=48 Identities=21% Similarity=0.269 Sum_probs=34.9
Q ss_pred ccccccchhHHHHHHHHHHh---c---------CCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 155 GVYAFKSRESTMKDIMEAMK---D---------ENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 155 ~~~~~vG~~~~~~~i~~~L~---~---------~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
.-.+++|.++.++++.+++. . ...+-+=++|..|.|||++|+.+.+..
T Consensus 53 ~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~ 112 (495)
T TIGR01241 53 TFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA 112 (495)
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc
Confidence 45678999888776665443 1 112346689999999999999998764
No 490
>PRK13976 thymidylate kinase; Provisional
Probab=75.03 E-value=7.1 Score=38.21 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=22.1
Q ss_pred EEEEEeCCCCchhHHHHHHHHHHhh
Q 003090 180 ITGICGMGGVGKTTLVKEIQKQAKE 204 (848)
Q Consensus 180 vi~i~G~gG~GKTtla~~v~~~~~~ 204 (848)
.|.|-|.-|+||||+++.+++..+.
T Consensus 2 fIv~EGiDGsGKsTq~~~L~~~L~~ 26 (209)
T PRK13976 2 FITFEGIDGSGKTTQSRLLAEYLSD 26 (209)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5789999999999999999987653
No 491
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=75.03 E-value=2.5 Score=40.22 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=21.3
Q ss_pred cEEEEEeCCCCchhHHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
.+++|+|..|.|||||++.+....
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccC
Confidence 589999999999999999998643
No 492
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=74.99 E-value=2.3 Score=41.91 Aligned_cols=21 Identities=38% Similarity=0.711 Sum_probs=18.8
Q ss_pred cEEEEEeCCCCchhHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQ 199 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~ 199 (848)
.+++|+|..|.||||+.+.+.
T Consensus 29 ~~~~i~G~NGsGKSTll~~i~ 49 (213)
T cd03279 29 GLFLICGPTGAGKSTILDAIT 49 (213)
T ss_pred CEEEEECCCCCCHHHHHHHhe
Confidence 589999999999999988773
No 493
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=74.97 E-value=3.9 Score=48.83 Aligned_cols=48 Identities=23% Similarity=0.203 Sum_probs=37.4
Q ss_pred ccccccchhHHHHHHHHHHhc-------------CCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 155 GVYAFKSRESTMKDIMEAMKD-------------ENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 155 ~~~~~vG~~~~~~~i~~~L~~-------------~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
...++.|.++.++.+.+++.. ....-+-++|..|.||||+|+.+.+..
T Consensus 176 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~ 236 (733)
T TIGR01243 176 TYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA 236 (733)
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh
Confidence 345688999999988887641 122457799999999999999998765
No 494
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=74.97 E-value=2.4 Score=43.03 Aligned_cols=23 Identities=35% Similarity=0.635 Sum_probs=20.9
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.+++|+|..|.|||||++.+.-.
T Consensus 30 e~~~i~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14247 30 TITALMGPSGSGKSTLLRVFNRL 52 (250)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 58999999999999999999754
No 495
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=74.96 E-value=2.4 Score=42.60 Aligned_cols=25 Identities=44% Similarity=0.591 Sum_probs=21.7
Q ss_pred ccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 178 VSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 178 ~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
-.+++|+|..|.|||||++.+....
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (237)
T cd03252 28 GEVVGIVGRSGSGKSTLTKLIQRFY 52 (237)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCc
Confidence 3589999999999999999998543
No 496
>PLN02924 thymidylate kinase
Probab=74.95 E-value=6.7 Score=38.74 Aligned_cols=27 Identities=19% Similarity=0.287 Sum_probs=23.8
Q ss_pred cEEEEEeCCCCchhHHHHHHHHHHhhc
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQAKEM 205 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~~~~~ 205 (848)
..|.|.|..|+||||+++.+.+..+..
T Consensus 17 ~~IviEGiDGsGKsTq~~~L~~~l~~~ 43 (220)
T PLN02924 17 ALIVLEGLDRSGKSTQCAKLVSFLKGL 43 (220)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 479999999999999999999887644
No 497
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=74.93 E-value=2.4 Score=42.12 Aligned_cols=24 Identities=29% Similarity=0.501 Sum_probs=21.5
Q ss_pred cEEEEEeCCCCchhHHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
.+++|+|..|.|||||++.+....
T Consensus 35 e~~~l~G~nGsGKSTLl~~i~G~~ 58 (224)
T TIGR02324 35 ECVALSGPSGAGKSTLLKSLYANY 58 (224)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 689999999999999999998643
No 498
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=74.89 E-value=2.6 Score=39.42 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=20.8
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.+++|+|..|.|||||.+.+...
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~ 49 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGL 49 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999854
No 499
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=74.89 E-value=2.4 Score=42.51 Aligned_cols=23 Identities=39% Similarity=0.553 Sum_probs=20.9
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.+++|+|..|.|||||++.+...
T Consensus 48 e~~~i~G~NGsGKSTLl~~i~Gl 70 (236)
T cd03267 48 EIVGFIGPNGAGKTTTLKILSGL 70 (236)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999854
No 500
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=74.88 E-value=3.6 Score=44.42 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=21.2
Q ss_pred ccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 178 VSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 178 ~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
..++.++|.+|+||||++..+-...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999998887543
Done!