Query 003090
Match_columns 848
No_of_seqs 549 out of 4846
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 12:57:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003090.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003090hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vq2_A TLR4, TOLL-like recepto 100.0 4.3E-33 1.5E-37 324.3 29.3 477 235-805 34-556 (606)
2 3rgz_A Protein brassinosteroid 100.0 4.7E-32 1.6E-36 322.5 28.0 197 232-462 177-379 (768)
3 3rgz_A Protein brassinosteroid 100.0 9E-32 3.1E-36 320.1 27.3 95 587-696 464-558 (768)
4 3vq2_A TLR4, TOLL-like recepto 100.0 4.1E-31 1.4E-35 307.6 26.9 465 211-770 34-558 (606)
5 2z63_A TOLL-like receptor 4, v 100.0 1.8E-30 6.3E-35 300.0 31.5 493 235-828 30-552 (570)
6 3t6q_A CD180 antigen; protein- 100.0 2.2E-31 7.6E-36 309.8 23.5 500 220-821 22-573 (606)
7 1ziw_A TOLL-like receptor 3; i 100.0 4.2E-30 1.4E-34 303.3 30.5 147 238-404 9-157 (680)
8 3t6q_A CD180 antigen; protein- 100.0 3.4E-30 1.2E-34 299.8 29.2 192 236-461 15-212 (606)
9 1ziw_A TOLL-like receptor 3; i 100.0 3.1E-29 1.1E-33 295.8 34.1 524 234-813 26-627 (680)
10 2z81_A CD282 antigen, TOLL-lik 100.0 2.7E-30 9.3E-35 297.0 24.1 478 240-811 12-513 (549)
11 2z63_A TOLL-like receptor 4, v 100.0 1.4E-30 4.9E-35 300.9 19.4 171 211-403 30-211 (570)
12 2z81_A CD282 antigen, TOLL-lik 100.0 3.4E-29 1.2E-33 287.8 26.6 467 220-769 15-509 (549)
13 3j0a_A TOLL-like receptor 5; m 100.0 1.8E-28 6.1E-33 294.8 27.1 154 234-406 25-188 (844)
14 4ecn_A Leucine-rich repeat pro 100.0 4E-29 1.4E-33 294.4 14.7 285 313-685 440-763 (876)
15 4eco_A Uncharacterized protein 100.0 6.4E-29 2.2E-33 288.5 15.7 401 265-808 193-633 (636)
16 2z7x_B TOLL-like receptor 1, v 100.0 4.4E-28 1.5E-32 276.4 21.5 457 236-811 3-484 (520)
17 4ecn_A Leucine-rich repeat pro 100.0 4.3E-28 1.5E-32 285.6 20.9 354 248-686 440-838 (876)
18 3j0a_A TOLL-like receptor 5; m 100.0 6.7E-27 2.3E-31 281.1 30.6 470 228-805 43-558 (844)
19 4eco_A Uncharacterized protein 100.0 6.1E-28 2.1E-32 280.3 20.1 360 245-687 195-599 (636)
20 4g8a_A TOLL-like receptor 4; l 99.9 2.1E-26 7.2E-31 269.9 26.0 149 644-820 441-592 (635)
21 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 7.9E-26 2.7E-30 259.9 26.0 457 236-810 34-512 (562)
22 2z7x_B TOLL-like receptor 1, v 99.9 4.6E-26 1.6E-30 259.6 21.0 446 258-827 3-480 (520)
23 4g8a_A TOLL-like receptor 4; l 99.9 5.4E-25 1.8E-29 257.9 27.4 473 221-768 42-578 (635)
24 1o6v_A Internalin A; bacterial 99.9 9E-25 3.1E-29 244.7 25.7 342 254-768 45-386 (466)
25 1o6v_A Internalin A; bacterial 99.9 1.1E-24 3.8E-29 244.0 24.1 340 234-686 47-386 (466)
26 3v47_A TOLL-like receptor 5B a 99.9 1.1E-24 3.8E-29 243.8 24.1 365 236-686 13-406 (455)
27 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 3.2E-24 1.1E-28 246.5 23.3 439 253-813 29-491 (562)
28 4fmz_A Internalin; leucine ric 99.9 1.3E-23 4.4E-28 226.1 23.7 173 246-459 35-207 (347)
29 3v47_A TOLL-like receptor 5B a 99.9 8.6E-24 2.9E-28 236.7 21.7 155 258-447 13-172 (455)
30 3o6n_A APL1; leucine-rich repe 99.9 1.3E-23 4.3E-28 229.9 20.1 173 249-459 39-213 (390)
31 1jl5_A Outer protein YOPM; leu 99.9 2.1E-23 7.1E-28 231.2 18.7 324 231-685 9-347 (454)
32 2id5_A Lingo-1, leucine rich r 99.9 7.6E-23 2.6E-27 230.2 22.3 191 236-459 14-208 (477)
33 3bz5_A Internalin-J, INLJ; leu 99.9 2.8E-23 9.5E-28 230.4 16.8 179 233-459 42-220 (457)
34 3oja_B Anopheles plasmodium-re 99.9 7.9E-23 2.7E-27 236.0 20.6 309 250-659 46-356 (597)
35 3o6n_A APL1; leucine-rich repe 99.9 3.1E-22 1E-26 218.9 23.9 303 232-659 44-350 (390)
36 1jl5_A Outer protein YOPM; leu 99.9 8E-23 2.8E-27 226.5 18.0 310 249-685 5-327 (454)
37 4fmz_A Internalin; leucine ric 99.9 4.1E-22 1.4E-26 214.3 21.7 301 233-659 44-344 (347)
38 3bz5_A Internalin-J, INLJ; leu 99.9 6.6E-22 2.3E-26 219.4 23.9 160 253-459 40-199 (457)
39 2id5_A Lingo-1, leucine rich r 99.9 4.1E-22 1.4E-26 224.2 21.2 314 258-686 14-331 (477)
40 3ogk_B Coronatine-insensitive 99.9 3.3E-23 1.1E-27 240.3 4.5 219 506-768 292-524 (592)
41 3oja_B Anopheles plasmodium-re 99.9 6.5E-21 2.2E-25 220.0 20.8 302 233-626 51-356 (597)
42 3ogk_B Coronatine-insensitive 99.8 1.8E-21 6.1E-26 225.7 10.2 406 253-767 110-548 (592)
43 4fcg_A Uncharacterized protein 99.8 7.5E-21 2.6E-25 201.6 13.8 239 182-459 59-309 (328)
44 2ft3_A Biglycan; proteoglycan, 99.8 3.7E-20 1.3E-24 197.4 17.6 148 235-405 35-185 (332)
45 2ft3_A Biglycan; proteoglycan, 99.8 9.6E-20 3.3E-24 194.2 19.9 293 256-626 34-331 (332)
46 2p1m_B Transport inhibitor res 99.8 7.2E-22 2.5E-26 229.2 3.0 217 506-769 288-518 (594)
47 1xku_A Decorin; proteoglycan, 99.8 1.1E-19 3.9E-24 193.5 19.5 187 235-459 33-224 (330)
48 1ogq_A PGIP-2, polygalacturona 99.8 2.9E-20 1E-24 195.9 13.9 176 234-443 51-235 (313)
49 1xku_A Decorin; proteoglycan, 99.8 3.2E-19 1.1E-23 190.0 19.8 169 255-459 31-200 (330)
50 4fcg_A Uncharacterized protein 99.8 1.9E-19 6.6E-24 190.8 17.9 136 277-446 79-223 (328)
51 2z80_A TOLL-like receptor 2, v 99.8 6.3E-20 2.2E-24 197.4 14.2 192 237-460 35-231 (353)
52 1z7x_W Ribonuclease inhibitor; 99.8 1E-20 3.6E-25 212.0 5.2 164 255-441 3-182 (461)
53 2z66_A Variable lymphocyte rec 99.8 1.1E-19 3.8E-24 191.4 10.8 194 236-459 10-207 (306)
54 1ogq_A PGIP-2, polygalacturona 99.8 3E-19 1E-23 188.1 13.4 172 255-459 50-229 (313)
55 2z80_A TOLL-like receptor 2, v 99.8 8.3E-19 2.8E-23 188.7 15.4 194 218-446 39-239 (353)
56 3zyj_A Leucine-rich repeat-con 99.8 1.6E-18 5.4E-23 192.4 17.8 241 236-573 46-290 (440)
57 3zyi_A Leucine-rich repeat-con 99.8 1.4E-18 5E-23 193.4 17.1 241 236-573 57-301 (452)
58 2p1m_B Transport inhibitor res 99.8 7.6E-20 2.6E-24 212.1 6.6 404 253-765 103-539 (594)
59 1z7x_W Ribonuclease inhibitor; 99.8 6.6E-20 2.2E-24 205.5 2.8 179 235-442 5-212 (461)
60 1ozn_A Reticulon 4 receptor; N 99.8 3.8E-18 1.3E-22 177.5 15.1 195 234-460 33-234 (285)
61 3o53_A Protein LRIM1, AGAP0063 99.8 8.1E-19 2.8E-23 185.4 8.7 126 254-406 33-158 (317)
62 3g06_A SSPH2 (leucine-rich rep 99.8 2.7E-17 9.3E-22 187.6 21.9 262 234-608 41-302 (622)
63 1ozn_A Reticulon 4 receptor; N 99.7 1.3E-17 4.4E-22 173.5 15.9 193 236-461 14-211 (285)
64 2z66_A Variable lymphocyte rec 99.7 1.3E-17 4.4E-22 175.5 14.3 196 234-463 29-235 (306)
65 3g06_A SSPH2 (leucine-rich rep 99.7 8E-17 2.7E-21 183.7 20.3 150 255-459 40-189 (622)
66 2o6q_A Variable lymphocyte rec 99.7 7E-17 2.4E-21 166.3 18.0 194 235-462 18-216 (270)
67 1p9a_G Platelet glycoprotein I 99.7 5.6E-17 1.9E-21 168.4 16.5 195 233-462 10-206 (290)
68 3zyi_A Leucine-rich repeat-con 99.7 5.6E-17 1.9E-21 180.6 15.2 195 234-462 76-277 (452)
69 2z62_A TOLL-like receptor 4, v 99.7 2.4E-17 8.3E-22 170.5 11.2 145 242-406 16-163 (276)
70 2z62_A TOLL-like receptor 4, v 99.7 8.7E-17 3E-21 166.3 15.3 196 234-462 29-235 (276)
71 3zyj_A Leucine-rich repeat-con 99.7 6.8E-17 2.3E-21 179.2 15.0 222 221-479 54-289 (440)
72 1wwl_A Monocyte differentiatio 99.7 5.3E-18 1.8E-22 178.7 4.2 194 234-459 44-261 (312)
73 2o6q_A Variable lymphocyte rec 99.7 4.3E-16 1.5E-20 160.3 16.9 177 234-442 38-218 (270)
74 1h6u_A Internalin H; cell adhe 99.7 7E-16 2.4E-20 161.8 18.8 189 233-463 41-229 (308)
75 2xwt_C Thyrotropin receptor; s 99.7 1.5E-16 5E-21 160.7 12.1 191 234-459 32-234 (239)
76 3m19_A Variable lymphocyte rec 99.7 5.8E-16 2E-20 157.5 16.3 175 235-442 16-192 (251)
77 1wwl_A Monocyte differentiatio 99.7 1.8E-17 6.1E-22 174.7 5.0 202 226-461 58-284 (312)
78 3o53_A Protein LRIM1, AGAP0063 99.7 9.3E-17 3.2E-21 169.6 10.4 201 220-462 20-225 (317)
79 3rfs_A Internalin B, repeat mo 99.7 7E-16 2.4E-20 158.9 15.8 188 238-461 24-215 (272)
80 3oja_A Leucine-rich immune mol 99.7 1.2E-16 4.2E-21 178.7 10.7 166 254-459 33-199 (487)
81 2xwt_C Thyrotropin receptor; s 99.7 1.8E-16 6.1E-21 160.1 10.8 173 238-446 16-197 (239)
82 3rfs_A Internalin B, repeat mo 99.6 3.4E-15 1.2E-19 153.7 17.9 176 233-442 41-218 (272)
83 1h6u_A Internalin H; cell adhe 99.6 2.2E-15 7.5E-20 158.1 16.6 177 241-459 27-203 (308)
84 3oja_A Leucine-rich immune mol 99.6 1.3E-15 4.5E-20 170.3 12.6 201 220-462 17-225 (487)
85 1p9a_G Platelet glycoprotein I 99.6 3.3E-15 1.1E-19 155.0 14.6 175 253-463 8-184 (290)
86 1h6t_A Internalin B; cell adhe 99.6 1E-14 3.5E-19 151.5 16.6 143 235-404 48-190 (291)
87 1h6t_A Internalin B; cell adhe 99.6 1.1E-14 3.8E-19 151.2 15.6 183 239-463 30-212 (291)
88 4glp_A Monocyte differentiatio 99.6 1.5E-15 5.2E-20 159.7 8.6 87 318-404 114-209 (310)
89 4glp_A Monocyte differentiatio 99.6 4E-15 1.4E-19 156.5 11.6 196 232-462 90-305 (310)
90 2ca6_A RAN GTPase-activating p 99.6 1.2E-15 4.2E-20 166.1 6.8 198 221-442 20-257 (386)
91 4ay9_X Follicle-stimulating ho 99.6 2E-14 6.9E-19 153.9 15.4 250 314-684 3-255 (350)
92 3m19_A Variable lymphocyte rec 99.6 2.6E-14 9E-19 145.2 15.5 173 255-462 14-190 (251)
93 2ast_B S-phase kinase-associat 99.6 1.3E-14 4.4E-19 154.8 13.7 130 279-442 47-182 (336)
94 4ay9_X Follicle-stimulating ho 99.6 1.1E-14 3.9E-19 155.8 12.8 179 236-447 12-196 (350)
95 2ca6_A RAN GTPase-activating p 99.5 5.8E-16 2E-20 168.6 1.4 171 247-441 23-228 (386)
96 2ast_B S-phase kinase-associat 99.5 5.5E-15 1.9E-19 157.7 8.7 194 233-459 70-280 (336)
97 3e6j_A Variable lymphocyte rec 99.5 4.5E-14 1.5E-18 141.0 14.7 151 235-406 21-173 (229)
98 1m9s_A Internalin B; cell inva 99.5 2.9E-14 9.8E-19 162.5 14.7 168 235-444 45-212 (605)
99 1m9s_A Internalin B; cell inva 99.5 4.9E-14 1.7E-18 160.6 16.4 184 238-463 26-209 (605)
100 2o6s_A Variable lymphocyte rec 99.5 2.8E-14 9.6E-19 140.4 12.2 172 236-448 10-185 (208)
101 4ezg_A Putative uncharacterize 99.5 3.2E-14 1.1E-18 138.6 12.3 151 253-442 42-194 (197)
102 2v9t_B SLIT homolog 2 protein 99.5 4.1E-14 1.4E-18 140.2 12.8 150 236-405 14-165 (220)
103 3goz_A Leucine-rich repeat-con 99.5 1E-14 3.5E-19 157.0 9.0 177 238-442 3-209 (362)
104 2v70_A SLIT-2, SLIT homolog 2 99.5 5.5E-14 1.9E-18 139.3 12.9 151 236-406 14-167 (220)
105 3cvr_A Invasion plasmid antige 99.5 1.1E-13 3.8E-18 155.7 15.4 177 234-463 60-242 (571)
106 4ezg_A Putative uncharacterize 99.5 1.2E-13 4E-18 134.5 13.2 149 233-405 44-194 (197)
107 1xeu_A Internalin C; cellular 99.5 8.8E-14 3E-18 142.0 12.3 167 236-445 22-188 (263)
108 1xeu_A Internalin C; cellular 99.5 7.3E-14 2.5E-18 142.6 11.6 170 251-463 15-184 (263)
109 1dce_A Protein (RAB geranylger 99.5 1.5E-15 5.1E-20 172.1 -1.4 189 233-457 349-566 (567)
110 2xot_A Amphoterin-induced prot 99.5 7.1E-14 2.4E-18 150.2 11.5 173 236-441 21-201 (361)
111 3goz_A Leucine-rich repeat-con 99.5 5E-14 1.7E-18 151.6 9.3 198 221-445 9-241 (362)
112 2o6s_A Variable lymphocyte rec 99.5 1.2E-13 4.1E-18 135.9 10.6 149 234-409 29-182 (208)
113 3e6j_A Variable lymphocyte rec 99.4 4.5E-13 1.5E-17 133.7 13.4 150 257-442 21-172 (229)
114 3qfl_A MLA10; coiled-coil, (CC 99.4 3.8E-13 1.3E-17 115.7 10.3 63 37-99 19-82 (115)
115 2v70_A SLIT-2, SLIT homolog 2 99.4 6.7E-13 2.3E-17 131.4 12.8 149 258-442 14-166 (220)
116 2v9t_B SLIT homolog 2 protein 99.4 4.5E-13 1.5E-17 132.7 11.1 149 258-441 14-164 (220)
117 1dce_A Protein (RAB geranylger 99.4 1.6E-13 5.6E-18 155.4 5.8 184 221-436 360-567 (567)
118 2ell_A Acidic leucine-rich nuc 99.4 1.8E-12 6.1E-17 122.6 11.4 140 277-447 22-165 (168)
119 3cvr_A Invasion plasmid antige 99.4 2.8E-12 9.6E-17 144.3 14.6 167 222-443 71-244 (571)
120 2xot_A Amphoterin-induced prot 99.4 1.1E-12 3.9E-17 140.7 10.9 164 221-405 29-202 (361)
121 4b8c_D Glucose-repressible alc 99.3 6.1E-13 2.1E-17 155.7 6.3 150 237-407 205-356 (727)
122 2ell_A Acidic leucine-rich nuc 99.3 5.1E-12 1.8E-16 119.4 10.4 130 255-406 24-161 (168)
123 2je0_A Acidic leucine-rich nuc 99.3 5.8E-12 2E-16 116.3 9.4 63 316-378 59-124 (149)
124 1w8a_A SLIT protein; signaling 99.3 8.4E-12 2.9E-16 120.6 10.6 127 236-381 11-140 (192)
125 1a9n_A U2A', U2A'; complex (nu 99.3 3.1E-12 1.1E-16 121.8 6.6 131 252-404 16-152 (176)
126 2je0_A Acidic leucine-rich nuc 99.3 7.3E-12 2.5E-16 115.6 8.8 123 234-376 18-149 (149)
127 2wfh_A SLIT homolog 2 protein 99.3 2.3E-11 8E-16 117.4 12.5 91 313-404 46-138 (193)
128 1w8a_A SLIT protein; signaling 99.3 1.3E-11 4.5E-16 119.2 10.3 126 258-406 11-140 (192)
129 2o6r_A Variable lymphocyte rec 99.3 2.6E-11 9E-16 115.6 12.0 127 236-382 10-139 (177)
130 2wfh_A SLIT homolog 2 protein 99.2 4.6E-11 1.6E-15 115.3 11.7 125 236-380 13-139 (193)
131 1a9n_A U2A', U2A'; complex (nu 99.2 3E-11 1E-15 115.0 10.0 136 275-442 15-153 (176)
132 4b8c_D Glucose-repressible alc 99.2 1.4E-11 4.6E-16 144.3 9.3 152 236-409 176-333 (727)
133 1ds9_A Outer arm dynein; leuci 99.2 1.2E-12 4.3E-17 127.3 -0.2 137 221-379 6-152 (198)
134 2o6r_A Variable lymphocyte rec 99.1 2.2E-10 7.6E-15 109.1 11.9 129 257-407 9-139 (177)
135 2a5y_B CED-4; apoptosis; HET: 99.1 9.1E-11 3.1E-15 132.9 10.4 76 160-235 131-213 (549)
136 1ds9_A Outer arm dynein; leuci 99.1 4.2E-12 1.4E-16 123.6 -0.5 142 268-435 38-180 (198)
137 3sb4_A Hypothetical leucine ri 99.1 2.3E-10 7.8E-15 121.1 12.1 191 232-457 48-327 (329)
138 3sb4_A Hypothetical leucine ri 99.0 8E-10 2.7E-14 116.9 11.7 293 319-763 23-327 (329)
139 2r9u_A Variable lymphocyte rec 99.0 7.2E-10 2.5E-14 104.8 9.0 102 258-380 15-118 (174)
140 3g39_A Variable lymphocyte rec 99.0 1.5E-09 5.2E-14 102.2 9.5 102 258-380 12-115 (170)
141 2r9u_A Variable lymphocyte rec 98.9 1.8E-09 6.3E-14 102.0 9.4 84 321-405 33-118 (174)
142 3g39_A Variable lymphocyte rec 98.9 2.9E-09 9.9E-14 100.3 9.4 84 321-405 30-115 (170)
143 3un9_A NLR family member X1; l 98.8 1.7E-09 5.9E-14 115.6 3.5 114 319-442 124-252 (372)
144 1vt4_I APAF-1 related killer D 98.7 7.3E-09 2.5E-13 119.7 7.2 74 159-232 130-205 (1221)
145 3un9_A NLR family member X1; l 98.6 1.2E-08 4.1E-13 109.1 3.0 163 224-407 65-254 (372)
146 2ifg_A High affinity nerve gro 98.6 1.3E-07 4.3E-12 100.8 9.3 102 237-357 12-116 (347)
147 4fdw_A Leucine rich hypothetic 98.5 6.8E-07 2.3E-11 96.4 14.5 176 244-458 123-307 (401)
148 3sfz_A APAF-1, apoptotic pepti 98.5 4.1E-08 1.4E-12 123.9 4.1 68 154-221 121-192 (1249)
149 1z6t_A APAF-1, apoptotic prote 98.5 1.1E-06 3.8E-11 100.9 14.8 74 155-229 122-199 (591)
150 2ifg_A High affinity nerve gro 98.4 2.5E-07 8.6E-12 98.5 8.0 90 313-405 24-116 (347)
151 4fs7_A Uncharacterized protein 98.4 5E-06 1.7E-10 90.0 17.1 80 587-683 295-374 (394)
152 4fdw_A Leucine rich hypothetic 98.4 2.7E-06 9.2E-11 91.7 14.4 200 222-461 146-355 (401)
153 2ra8_A Uncharacterized protein 98.3 7.5E-07 2.6E-11 94.2 7.1 140 273-442 166-320 (362)
154 4fs7_A Uncharacterized protein 98.2 8.5E-06 2.9E-10 88.2 14.4 100 559-680 294-393 (394)
155 3e4g_A ATP synthase subunit S, 98.1 1.3E-06 4.4E-11 80.7 4.1 68 587-663 83-154 (176)
156 3e4g_A ATP synthase subunit S, 98.1 2.7E-06 9.3E-11 78.6 5.6 91 534-630 62-154 (176)
157 2ra8_A Uncharacterized protein 98.1 3.9E-06 1.3E-10 88.7 6.8 132 253-406 170-321 (362)
158 1io0_A Tropomodulin; LRR prote 97.8 1E-05 3.5E-10 76.9 4.5 118 315-442 30-164 (185)
159 1io0_A Tropomodulin; LRR prote 97.8 8.9E-06 3.1E-10 77.3 3.0 117 274-405 31-164 (185)
160 4gt6_A Cell surface protein; l 97.6 0.0011 3.8E-08 71.4 17.4 31 257-288 66-96 (394)
161 3rw6_A Nuclear RNA export fact 97.6 0.00011 3.6E-09 73.5 7.5 37 176-214 22-58 (267)
162 4gt6_A Cell surface protein; l 97.5 0.0033 1.1E-07 67.7 19.1 114 267-402 51-170 (394)
163 3rw6_A Nuclear RNA export fact 97.5 5.8E-05 2E-09 75.4 4.7 65 276-357 167-233 (267)
164 1w5s_A Origin recognition comp 96.7 0.0015 5.1E-08 70.9 6.1 77 157-233 22-111 (412)
165 2qen_A Walker-type ATPase; unk 96.6 0.0024 8.3E-08 67.4 7.1 55 155-218 10-64 (350)
166 2qby_A CDC6 homolog 1, cell di 96.5 0.0032 1.1E-07 67.5 7.2 77 157-233 20-101 (386)
167 2chg_A Replication factor C sm 96.4 0.0098 3.4E-07 57.8 9.7 48 155-202 15-62 (226)
168 1jbk_A CLPB protein; beta barr 96.4 0.0039 1.3E-07 59.1 6.5 47 156-202 21-67 (195)
169 2qby_B CDC6 homolog 3, cell di 96.4 0.0043 1.5E-07 66.5 7.5 77 157-233 20-107 (384)
170 4h09_A Hypothetical leucine ri 96.4 0.26 8.9E-06 52.2 21.3 79 317-401 42-122 (379)
171 2fna_A Conserved hypothetical 96.3 0.0074 2.5E-07 63.8 8.7 55 155-218 11-65 (357)
172 2p65_A Hypothetical protein PF 96.1 0.0058 2E-07 57.6 5.6 47 156-202 21-67 (187)
173 2v1u_A Cell division control p 95.8 0.014 4.7E-07 62.5 7.7 77 157-233 19-103 (387)
174 1fnn_A CDC6P, cell division co 95.8 0.021 7.2E-07 61.1 9.1 76 157-233 17-98 (389)
175 1njg_A DNA polymerase III subu 95.7 0.014 4.8E-07 57.6 6.8 49 155-203 21-70 (250)
176 1sxj_B Activator 1 37 kDa subu 95.4 0.023 7.9E-07 58.9 7.3 50 153-202 17-66 (323)
177 1iqp_A RFCS; clamp loader, ext 94.8 0.034 1.1E-06 57.8 6.5 48 155-202 23-70 (327)
178 3rfe_A Platelet glycoprotein I 94.6 0.033 1.1E-06 48.7 4.9 52 236-288 11-64 (130)
179 3te6_A Regulatory protein SIR3 94.6 0.064 2.2E-06 54.7 7.6 78 157-234 20-106 (318)
180 3n70_A Transport activator; si 94.3 0.044 1.5E-06 49.0 5.0 44 158-202 2-48 (145)
181 4h09_A Hypothetical leucine ri 94.0 0.11 3.8E-06 55.2 8.3 81 317-400 236-318 (379)
182 3h4m_A Proteasome-activating n 93.8 0.075 2.6E-06 53.9 6.3 48 155-202 15-75 (285)
183 3pxg_A Negative regulator of g 93.7 0.067 2.3E-06 58.5 6.0 47 156-202 179-225 (468)
184 1pgv_A TMD-1, tropomodulin TMD 93.6 0.082 2.8E-06 49.6 5.5 113 319-440 39-168 (197)
185 1sxj_D Activator 1 41 kDa subu 93.5 0.058 2E-06 56.7 4.9 50 153-202 33-82 (353)
186 3syl_A Protein CBBX; photosynt 93.5 0.12 4E-06 53.2 7.1 47 158-204 32-93 (309)
187 2chq_A Replication factor C sm 93.2 0.087 3E-06 54.4 5.7 49 154-202 14-62 (319)
188 1sxj_A Activator 1 95 kDa subu 93.1 0.11 3.8E-06 57.6 6.7 52 151-202 33-101 (516)
189 3ec2_A DNA replication protein 92.9 0.091 3.1E-06 49.0 4.8 41 163-203 20-63 (180)
190 1hqc_A RUVB; extended AAA-ATPa 92.8 0.11 3.6E-06 53.9 5.6 47 156-202 11-62 (324)
191 3pfi_A Holliday junction ATP-d 92.7 0.14 4.7E-06 53.4 6.3 48 155-202 27-79 (338)
192 1sxj_E Activator 1 40 kDa subu 92.6 0.084 2.9E-06 55.5 4.5 49 153-201 10-59 (354)
193 1jr3_A DNA polymerase III subu 92.4 0.17 5.7E-06 53.6 6.7 47 156-202 15-62 (373)
194 3b9p_A CG5977-PA, isoform A; A 92.4 0.18 6E-06 51.4 6.7 48 155-202 19-78 (297)
195 3cf0_A Transitional endoplasmi 92.3 0.17 6E-06 51.6 6.5 48 155-202 13-73 (301)
196 1pgv_A TMD-1, tropomodulin TMD 92.2 0.055 1.9E-06 50.7 2.2 87 316-403 65-168 (197)
197 1rz3_A Hypothetical protein rb 91.9 0.19 6.4E-06 47.8 5.7 41 162-202 3-46 (201)
198 3pvs_A Replication-associated 91.8 0.17 5.7E-06 54.8 5.8 48 155-202 24-74 (447)
199 1sxj_C Activator 1 40 kDa subu 91.8 0.2 6.8E-06 52.2 6.3 51 152-202 20-70 (340)
200 2qz4_A Paraplegin; AAA+, SPG7, 91.8 0.19 6.6E-06 50.0 6.0 47 156-202 5-63 (262)
201 2w58_A DNAI, primosome compone 91.8 0.26 8.8E-06 46.8 6.5 50 165-216 37-90 (202)
202 3rfe_A Platelet glycoprotein I 91.7 0.25 8.6E-06 43.0 5.8 54 348-404 12-67 (130)
203 3bos_A Putative DNA replicatio 91.6 0.38 1.3E-05 47.0 7.9 59 157-217 28-89 (242)
204 3d8b_A Fidgetin-like protein 1 91.6 0.24 8.2E-06 52.0 6.7 47 156-202 83-141 (357)
205 3co5_A Putative two-component 91.6 0.089 3.1E-06 46.8 2.8 44 157-201 4-50 (143)
206 3pxi_A Negative regulator of g 91.2 0.2 6.7E-06 58.7 6.0 47 156-202 179-225 (758)
207 1qvr_A CLPB protein; coiled co 91.1 0.16 5.5E-06 60.2 5.2 47 156-202 169-215 (854)
208 1lv7_A FTSH; alpha/beta domain 91.1 0.27 9.4E-06 48.7 6.1 48 155-202 10-69 (257)
209 3e70_C DPA, signal recognition 90.9 1.1 3.9E-05 45.8 10.7 28 176-203 127-154 (328)
210 2ga8_A Hypothetical 39.9 kDa p 90.8 0.31 1.1E-05 50.1 6.2 44 160-203 2-49 (359)
211 1ofh_A ATP-dependent HSL prote 90.8 0.22 7.7E-06 50.9 5.4 46 157-202 15-74 (310)
212 2x8a_A Nuclear valosin-contain 90.7 0.24 8.3E-06 49.6 5.3 47 156-202 9-68 (274)
213 2kjq_A DNAA-related protein; s 90.6 0.18 6E-06 45.2 3.8 44 157-203 18-61 (149)
214 1in4_A RUVB, holliday junction 90.6 0.3 1E-05 50.7 6.1 47 156-202 24-75 (334)
215 1r6b_X CLPA protein; AAA+, N-t 90.4 0.26 8.9E-06 57.7 6.1 47 156-202 185-231 (758)
216 1xwi_A SKD1 protein; VPS4B, AA 90.3 0.38 1.3E-05 49.5 6.6 48 155-202 10-69 (322)
217 3c8u_A Fructokinase; YP_612366 90.3 0.27 9.1E-06 47.0 5.0 39 165-203 7-47 (208)
218 3eie_A Vacuolar protein sortin 90.1 0.4 1.4E-05 49.4 6.5 48 155-202 16-75 (322)
219 2hf9_A Probable hydrogenase ni 90.0 0.34 1.2E-05 46.9 5.6 39 164-202 24-62 (226)
220 3uk6_A RUVB-like 2; hexameric 90.0 0.33 1.1E-05 51.2 6.0 48 156-203 43-95 (368)
221 2wsm_A Hydrogenase expression/ 90.0 0.24 8.3E-06 47.7 4.5 46 157-202 9-54 (221)
222 1ixz_A ATP-dependent metallopr 89.9 0.37 1.3E-05 47.6 5.9 47 156-202 15-73 (254)
223 3kl4_A SRP54, signal recogniti 89.9 1 3.5E-05 48.0 9.5 27 177-203 96-122 (433)
224 3lw7_A Adenylate kinase relate 89.8 0.16 5.4E-06 46.9 3.0 20 179-198 2-21 (179)
225 2bjv_A PSP operon transcriptio 89.8 0.27 9.4E-06 49.0 4.8 45 157-202 6-53 (265)
226 1zp6_A Hypothetical protein AT 89.4 0.19 6.4E-06 47.2 3.1 23 178-200 9-31 (191)
227 3vfd_A Spastin; ATPase, microt 89.3 0.49 1.7E-05 50.3 6.6 48 155-202 113-172 (389)
228 1iy2_A ATP-dependent metallopr 89.3 0.43 1.5E-05 47.9 5.9 48 155-202 38-97 (278)
229 1kgd_A CASK, peripheral plasma 88.9 0.23 8E-06 46.1 3.4 23 179-201 6-28 (180)
230 4fcw_A Chaperone protein CLPB; 88.9 0.45 1.5E-05 48.7 5.9 46 157-202 17-71 (311)
231 3vaa_A Shikimate kinase, SK; s 88.9 0.25 8.4E-06 46.9 3.5 25 178-202 25-49 (199)
232 1d2n_A N-ethylmaleimide-sensit 88.8 0.46 1.6E-05 47.5 5.7 46 157-202 33-88 (272)
233 3u61_B DNA polymerase accessor 88.8 0.51 1.8E-05 48.6 6.2 50 153-202 22-72 (324)
234 3kb2_A SPBC2 prophage-derived 88.8 0.25 8.7E-06 45.3 3.5 24 179-202 2-25 (173)
235 1xjc_A MOBB protein homolog; s 88.6 0.35 1.2E-05 44.1 4.1 27 177-203 3-29 (169)
236 1ojl_A Transcriptional regulat 88.4 0.41 1.4E-05 48.8 5.1 46 157-202 2-49 (304)
237 1qhx_A CPT, protein (chloramph 88.3 0.29 9.7E-06 45.3 3.5 23 179-201 4-26 (178)
238 2xxa_A Signal recognition part 88.3 1.7 5.8E-05 46.5 9.9 27 177-203 99-125 (433)
239 2qp9_X Vacuolar protein sortin 88.1 0.53 1.8E-05 49.2 5.8 48 155-202 49-108 (355)
240 4eun_A Thermoresistant glucoki 88.1 0.32 1.1E-05 46.1 3.7 27 176-202 27-53 (200)
241 1kag_A SKI, shikimate kinase I 88.1 0.25 8.5E-06 45.5 2.9 24 179-202 5-28 (173)
242 1j8m_F SRP54, signal recogniti 87.7 3.9 0.00013 41.2 11.7 26 178-203 98-123 (297)
243 2zan_A Vacuolar protein sortin 87.7 0.81 2.8E-05 49.5 7.1 48 155-202 132-191 (444)
244 2r62_A Cell division protease 87.6 0.31 1.1E-05 48.6 3.6 47 156-202 10-68 (268)
245 3t61_A Gluconokinase; PSI-biol 87.6 0.28 9.7E-06 46.5 3.1 25 178-202 18-42 (202)
246 3uie_A Adenylyl-sulfate kinase 87.6 0.31 1.1E-05 46.2 3.4 29 175-203 22-50 (200)
247 1odf_A YGR205W, hypothetical 3 87.5 0.6 2.1E-05 47.0 5.6 28 176-203 29-56 (290)
248 1knq_A Gluconate kinase; ALFA/ 87.5 0.35 1.2E-05 44.6 3.5 23 179-201 9-31 (175)
249 2bdt_A BH3686; alpha-beta prot 87.4 0.3 1E-05 45.8 3.0 22 179-200 3-24 (189)
250 3fwy_A Light-independent proto 87.4 0.3 1E-05 49.9 3.3 25 176-200 46-70 (314)
251 4gp7_A Metallophosphoesterase; 87.3 0.26 8.8E-06 45.4 2.5 21 179-199 10-30 (171)
252 3tr0_A Guanylate kinase, GMP k 87.3 0.33 1.1E-05 46.1 3.4 23 179-201 8-30 (205)
253 3dm5_A SRP54, signal recogniti 87.1 4.5 0.00015 43.1 12.1 27 177-203 99-125 (443)
254 1ly1_A Polynucleotide kinase; 87.0 0.36 1.2E-05 44.7 3.3 22 179-200 3-24 (181)
255 2bbw_A Adenylate kinase 4, AK4 87.0 0.35 1.2E-05 47.6 3.4 26 177-202 26-51 (246)
256 1ye8_A Protein THEP1, hypothet 86.9 0.37 1.3E-05 44.6 3.3 24 180-203 2-25 (178)
257 2if2_A Dephospho-COA kinase; a 86.9 0.37 1.3E-05 45.8 3.4 22 179-200 2-23 (204)
258 3trf_A Shikimate kinase, SK; a 86.8 0.39 1.3E-05 44.7 3.5 25 178-202 5-29 (185)
259 3asz_A Uridine kinase; cytidin 86.6 0.42 1.4E-05 45.6 3.7 26 177-202 5-30 (211)
260 2jaq_A Deoxyguanosine kinase; 86.5 0.4 1.4E-05 45.4 3.5 23 180-202 2-24 (205)
261 3a00_A Guanylate kinase, GMP k 86.5 0.34 1.2E-05 45.3 2.9 24 179-202 2-25 (186)
262 1nks_A Adenylate kinase; therm 86.3 0.43 1.5E-05 44.7 3.6 25 179-203 2-26 (194)
263 2j41_A Guanylate kinase; GMP, 86.3 0.4 1.4E-05 45.5 3.4 23 179-201 7-29 (207)
264 3iij_A Coilin-interacting nucl 86.3 0.38 1.3E-05 44.6 3.1 24 179-202 12-35 (180)
265 1htw_A HI0065; nucleotide-bind 86.2 0.42 1.4E-05 43.1 3.2 27 176-202 31-57 (158)
266 1lvg_A Guanylate kinase, GMP k 86.1 0.37 1.3E-05 45.5 2.9 24 179-202 5-28 (198)
267 2qor_A Guanylate kinase; phosp 86.0 0.39 1.3E-05 45.6 3.1 25 178-202 12-36 (204)
268 1znw_A Guanylate kinase, GMP k 85.8 0.41 1.4E-05 45.6 3.0 25 178-202 20-44 (207)
269 1kht_A Adenylate kinase; phosp 85.7 0.47 1.6E-05 44.3 3.5 24 179-202 4-27 (192)
270 3tau_A Guanylate kinase, GMP k 85.6 0.46 1.6E-05 45.3 3.4 25 177-201 7-31 (208)
271 1g8p_A Magnesium-chelatase 38 85.6 0.64 2.2E-05 48.5 4.8 47 156-202 23-69 (350)
272 1cke_A CK, MSSA, protein (cyti 85.5 0.48 1.6E-05 45.8 3.5 24 179-202 6-29 (227)
273 1jjv_A Dephospho-COA kinase; P 85.5 0.42 1.4E-05 45.5 3.0 22 179-200 3-24 (206)
274 2qt1_A Nicotinamide riboside k 85.4 0.44 1.5E-05 45.4 3.1 23 178-200 21-43 (207)
275 1uf9_A TT1252 protein; P-loop, 85.4 0.56 1.9E-05 44.4 3.8 26 176-201 6-31 (203)
276 2yvu_A Probable adenylyl-sulfa 85.3 0.52 1.8E-05 43.9 3.5 26 178-203 13-38 (186)
277 3aez_A Pantothenate kinase; tr 85.3 0.43 1.5E-05 48.7 3.1 27 177-203 89-115 (312)
278 2rhm_A Putative kinase; P-loop 85.3 0.53 1.8E-05 44.1 3.6 24 179-202 6-29 (193)
279 1gvn_B Zeta; postsegregational 85.2 0.96 3.3E-05 45.5 5.6 24 178-201 33-56 (287)
280 1via_A Shikimate kinase; struc 85.1 0.47 1.6E-05 43.7 3.1 23 180-202 6-28 (175)
281 3hws_A ATP-dependent CLP prote 85.0 0.87 3E-05 47.8 5.5 46 157-202 15-75 (363)
282 1um8_A ATP-dependent CLP prote 84.9 0.9 3.1E-05 47.9 5.5 46 157-202 21-96 (376)
283 3tqc_A Pantothenate kinase; bi 84.9 0.88 3E-05 46.4 5.2 26 177-202 91-116 (321)
284 1zuh_A Shikimate kinase; alpha 84.8 0.57 2E-05 42.8 3.5 25 178-202 7-31 (168)
285 1uj2_A Uridine-cytidine kinase 84.7 0.56 1.9E-05 46.3 3.6 26 176-201 20-45 (252)
286 1z6g_A Guanylate kinase; struc 84.7 0.47 1.6E-05 45.6 3.0 23 179-201 24-46 (218)
287 4b4t_K 26S protease regulatory 84.6 1.1 3.9E-05 47.5 6.1 49 155-203 170-231 (428)
288 1y63_A LMAJ004144AAA protein; 84.6 0.6 2E-05 43.4 3.5 24 178-201 10-33 (184)
289 2c9o_A RUVB-like 1; hexameric 84.6 1 3.5E-05 48.9 5.9 47 156-202 36-87 (456)
290 2ze6_A Isopentenyl transferase 84.5 0.57 1.9E-05 46.2 3.5 24 179-202 2-25 (253)
291 2ce7_A Cell division protein F 84.3 1.1 3.9E-05 48.4 6.0 47 156-202 15-73 (476)
292 2r44_A Uncharacterized protein 84.3 0.69 2.4E-05 47.8 4.3 44 157-202 27-70 (331)
293 4b4t_L 26S protease subunit RP 84.3 1.2 4.2E-05 47.4 6.1 49 155-203 179-240 (437)
294 4b4t_M 26S protease regulatory 84.2 1.2 4E-05 47.5 5.9 49 155-203 179-240 (434)
295 4e22_A Cytidylate kinase; P-lo 84.1 0.51 1.7E-05 46.6 3.0 25 177-201 26-50 (252)
296 2onk_A Molybdate/tungstate ABC 84.1 0.6 2.1E-05 45.6 3.4 25 176-201 23-47 (240)
297 2iyv_A Shikimate kinase, SK; t 84.0 0.54 1.8E-05 43.7 3.0 24 179-202 3-26 (184)
298 3ney_A 55 kDa erythrocyte memb 83.9 0.67 2.3E-05 43.4 3.5 25 177-201 18-42 (197)
299 2i3b_A HCR-ntpase, human cance 83.9 0.63 2.1E-05 43.5 3.3 25 179-203 2-26 (189)
300 2c95_A Adenylate kinase 1; tra 83.8 0.68 2.3E-05 43.5 3.6 25 178-202 9-33 (196)
301 3b85_A Phosphate starvation-in 83.7 0.6 2.1E-05 44.4 3.1 23 179-201 23-45 (208)
302 1ukz_A Uridylate kinase; trans 83.6 0.76 2.6E-05 43.5 3.9 25 177-201 14-38 (203)
303 3hu3_A Transitional endoplasmi 83.6 1.2 4.2E-05 48.5 6.0 47 156-202 203-262 (489)
304 2jeo_A Uridine-cytidine kinase 83.6 0.62 2.1E-05 45.7 3.3 26 177-202 24-49 (245)
305 2e87_A Hypothetical protein PH 83.6 43 0.0015 34.5 18.7 24 176-199 165-188 (357)
306 1tev_A UMP-CMP kinase; ploop, 83.6 0.67 2.3E-05 43.4 3.5 24 179-202 4-27 (196)
307 1qvr_A CLPB protein; coiled co 83.6 6.6 0.00023 46.4 12.7 46 157-202 558-612 (854)
308 2bwj_A Adenylate kinase 5; pho 83.6 0.7 2.4E-05 43.5 3.6 24 179-202 13-36 (199)
309 3cm0_A Adenylate kinase; ATP-b 83.5 0.68 2.3E-05 43.0 3.5 24 179-202 5-28 (186)
310 2grj_A Dephospho-COA kinase; T 83.5 0.71 2.4E-05 43.2 3.5 25 177-201 11-35 (192)
311 2pt5_A Shikimate kinase, SK; a 83.4 0.66 2.3E-05 42.3 3.3 23 180-202 2-24 (168)
312 2pcj_A ABC transporter, lipopr 83.4 0.61 2.1E-05 45.0 3.1 23 179-201 31-53 (224)
313 1np6_A Molybdopterin-guanine d 83.3 0.77 2.6E-05 42.2 3.6 25 178-202 6-30 (174)
314 2f1r_A Molybdopterin-guanine d 83.3 0.42 1.4E-05 43.8 1.8 26 179-204 3-28 (171)
315 2p5t_B PEZT; postsegregational 83.3 0.94 3.2E-05 44.7 4.5 25 178-202 32-56 (253)
316 3tif_A Uncharacterized ABC tra 83.2 0.61 2.1E-05 45.4 3.0 22 179-200 32-53 (235)
317 2dhr_A FTSH; AAA+ protein, hex 83.2 1.3 4.4E-05 48.3 5.9 47 156-202 30-88 (499)
318 1e6c_A Shikimate kinase; phosp 83.2 0.63 2.2E-05 42.6 3.0 24 179-202 3-26 (173)
319 1s96_A Guanylate kinase, GMP k 83.2 0.69 2.4E-05 44.4 3.4 25 178-202 16-40 (219)
320 2vli_A Antibiotic resistance p 83.1 0.62 2.1E-05 43.2 3.0 23 179-201 6-28 (183)
321 1rj9_A FTSY, signal recognitio 83.1 0.9 3.1E-05 46.1 4.4 27 177-203 101-127 (304)
322 2pbr_A DTMP kinase, thymidylat 83.0 0.73 2.5E-05 43.1 3.5 23 180-202 2-24 (195)
323 4b4t_J 26S protease regulatory 83.0 1.2 4.2E-05 46.6 5.4 49 155-203 146-207 (405)
324 2plr_A DTMP kinase, probable t 82.9 0.73 2.5E-05 43.9 3.5 25 179-203 5-29 (213)
325 1qf9_A UMP/CMP kinase, protein 82.9 0.78 2.7E-05 42.9 3.6 24 179-202 7-30 (194)
326 3a4m_A L-seryl-tRNA(SEC) kinas 82.8 0.68 2.3E-05 45.9 3.3 23 179-201 5-27 (260)
327 2px0_A Flagellar biosynthesis 82.6 0.66 2.3E-05 46.9 3.1 27 177-203 104-130 (296)
328 2cvh_A DNA repair and recombin 82.6 1.4 4.9E-05 42.0 5.5 43 179-226 21-63 (220)
329 3nwj_A ATSK2; P loop, shikimat 82.6 0.65 2.2E-05 45.6 2.9 24 179-202 49-72 (250)
330 1l8q_A Chromosomal replication 82.6 1.3 4.6E-05 45.4 5.6 37 167-203 24-62 (324)
331 3m6a_A ATP-dependent protease 82.3 1.3 4.3E-05 49.3 5.6 46 157-202 81-132 (543)
332 1gtv_A TMK, thymidylate kinase 82.3 0.44 1.5E-05 45.6 1.6 24 180-203 2-25 (214)
333 2cdn_A Adenylate kinase; phosp 82.2 0.81 2.8E-05 43.2 3.5 24 179-202 21-44 (201)
334 2z4s_A Chromosomal replication 82.2 1.4 4.7E-05 47.5 5.7 45 159-203 108-155 (440)
335 2cbz_A Multidrug resistance-as 82.2 0.7 2.4E-05 45.0 3.0 23 179-201 32-54 (237)
336 2pez_A Bifunctional 3'-phospho 82.1 0.81 2.8E-05 42.3 3.3 24 179-202 6-29 (179)
337 1b0u_A Histidine permease; ABC 82.0 0.71 2.4E-05 45.8 3.0 23 179-201 33-55 (262)
338 3gfo_A Cobalt import ATP-bindi 81.9 0.71 2.4E-05 46.0 3.0 22 179-200 35-56 (275)
339 2wwf_A Thymidilate kinase, put 81.8 0.9 3.1E-05 43.2 3.6 25 179-203 11-35 (212)
340 3p32_A Probable GTPase RV1496/ 81.6 1.4 4.9E-05 45.9 5.4 37 166-202 65-103 (355)
341 3nbx_X ATPase RAVA; AAA+ ATPas 81.6 1.2 4E-05 48.7 4.9 44 157-202 22-65 (500)
342 2d2e_A SUFC protein; ABC-ATPas 81.6 0.79 2.7E-05 45.1 3.2 23 179-201 30-52 (250)
343 1nn5_A Similar to deoxythymidy 81.6 0.91 3.1E-05 43.3 3.6 26 178-203 9-34 (215)
344 3b9q_A Chloroplast SRP recepto 81.5 0.98 3.4E-05 45.8 3.9 26 178-203 100-125 (302)
345 1m7g_A Adenylylsulfate kinase; 81.5 0.86 2.9E-05 43.5 3.4 28 176-203 23-50 (211)
346 4g1u_C Hemin import ATP-bindin 81.4 0.76 2.6E-05 45.6 3.0 23 179-201 38-60 (266)
347 4b4t_H 26S protease regulatory 81.4 1.6 5.3E-05 46.6 5.5 48 156-203 208-268 (467)
348 3lnc_A Guanylate kinase, GMP k 81.3 0.6 2E-05 45.4 2.2 23 179-201 28-51 (231)
349 1ji0_A ABC transporter; ATP bi 81.3 0.78 2.7E-05 44.8 3.0 23 179-201 33-55 (240)
350 2olj_A Amino acid ABC transpor 81.3 0.78 2.7E-05 45.4 3.0 24 178-201 50-73 (263)
351 2z0h_A DTMP kinase, thymidylat 81.3 0.93 3.2E-05 42.5 3.5 23 180-202 2-24 (197)
352 2ehv_A Hypothetical protein PH 81.2 0.81 2.8E-05 44.9 3.2 22 179-200 31-52 (251)
353 2pze_A Cystic fibrosis transme 81.2 0.79 2.7E-05 44.4 3.0 23 179-201 35-57 (229)
354 1sgw_A Putative ABC transporte 81.2 0.71 2.4E-05 44.1 2.6 23 179-201 36-58 (214)
355 1ypw_A Transitional endoplasmi 81.1 1.3 4.4E-05 51.9 5.2 48 155-202 202-262 (806)
356 1sq5_A Pantothenate kinase; P- 81.1 0.87 3E-05 46.5 3.4 27 176-202 78-104 (308)
357 2zu0_C Probable ATP-dependent 81.1 0.83 2.8E-05 45.4 3.2 23 179-201 47-69 (267)
358 1g6h_A High-affinity branched- 81.1 0.8 2.7E-05 45.3 3.0 23 179-201 34-56 (257)
359 3tlx_A Adenylate kinase 2; str 81.0 2 6.9E-05 41.9 5.9 27 176-202 27-53 (243)
360 1vht_A Dephospho-COA kinase; s 81.0 0.9 3.1E-05 43.6 3.3 22 179-200 5-26 (218)
361 2yhs_A FTSY, cell division pro 80.9 1.7 5.9E-05 46.8 5.7 26 178-203 293-318 (503)
362 1g41_A Heat shock protein HSLU 80.9 1.3 4.3E-05 47.4 4.6 46 157-202 15-74 (444)
363 4b4t_I 26S protease regulatory 80.9 2 7E-05 45.2 6.1 49 155-203 180-241 (437)
364 1zd8_A GTP:AMP phosphotransfer 80.8 0.98 3.4E-05 43.6 3.6 23 179-201 8-30 (227)
365 4a74_A DNA repair and recombin 80.8 0.89 3.1E-05 43.9 3.3 23 179-201 26-48 (231)
366 2ff7_A Alpha-hemolysin translo 80.6 0.86 3E-05 44.7 3.0 23 179-201 36-58 (247)
367 1aky_A Adenylate kinase; ATP:A 80.5 1.1 3.7E-05 43.0 3.8 24 179-202 5-28 (220)
368 1n0w_A DNA repair protein RAD5 80.4 2.2 7.5E-05 41.5 6.0 47 179-225 25-75 (243)
369 1vpl_A ABC transporter, ATP-bi 80.3 0.88 3E-05 44.9 3.0 23 179-201 42-64 (256)
370 2f6r_A COA synthase, bifunctio 80.3 0.87 3E-05 45.7 3.1 22 178-199 75-96 (281)
371 1mv5_A LMRA, multidrug resista 80.3 0.88 3E-05 44.5 3.0 23 179-201 29-51 (243)
372 2v54_A DTMP kinase, thymidylat 80.2 1 3.4E-05 42.6 3.4 23 179-201 5-27 (204)
373 2qi9_C Vitamin B12 import ATP- 80.2 0.9 3.1E-05 44.6 3.0 23 179-201 27-49 (249)
374 2ghi_A Transport protein; mult 80.1 0.91 3.1E-05 44.9 3.0 23 179-201 47-69 (260)
375 1oix_A RAS-related protein RAB 79.8 1.1 3.8E-05 41.9 3.4 23 179-201 30-52 (191)
376 2ixe_A Antigen peptide transpo 79.7 0.94 3.2E-05 45.1 3.0 24 178-201 45-68 (271)
377 2yz2_A Putative ABC transporte 79.7 0.95 3.2E-05 45.0 3.0 23 179-201 34-56 (266)
378 3fb4_A Adenylate kinase; psych 79.6 1.1 3.8E-05 42.8 3.5 23 180-202 2-24 (216)
379 2ihy_A ABC transporter, ATP-bi 79.4 0.96 3.3E-05 45.2 3.0 23 179-201 48-70 (279)
380 1ex7_A Guanylate kinase; subst 79.4 1.1 3.9E-05 41.5 3.2 22 180-201 3-24 (186)
381 2qgz_A Helicase loader, putati 79.2 2 6.8E-05 43.7 5.3 39 165-203 136-177 (308)
382 2nq2_C Hypothetical ABC transp 79.1 1 3.4E-05 44.4 3.0 23 179-201 32-54 (253)
383 2og2_A Putative signal recogni 78.9 1.3 4.5E-05 45.9 3.9 26 178-203 157-182 (359)
384 3ake_A Cytidylate kinase; CMP 78.9 1.2 4E-05 42.2 3.3 23 180-202 4-26 (208)
385 3dl0_A Adenylate kinase; phosp 78.8 1.2 4.2E-05 42.5 3.5 22 180-201 2-23 (216)
386 3r20_A Cytidylate kinase; stru 78.6 1.3 4.4E-05 42.8 3.5 24 179-202 10-33 (233)
387 3d3q_A TRNA delta(2)-isopenten 78.5 1.2 4.3E-05 45.5 3.5 23 179-201 8-30 (340)
388 1yrb_A ATP(GTP)binding protein 78.5 1.1 3.9E-05 44.2 3.3 25 178-202 14-38 (262)
389 1zak_A Adenylate kinase; ATP:A 78.5 1.1 3.9E-05 43.0 3.2 24 179-202 6-29 (222)
390 1nij_A Hypothetical protein YJ 78.4 1.1 3.7E-05 45.9 3.1 25 177-201 3-27 (318)
391 3sop_A Neuronal-specific septi 78.1 1.3 4.3E-05 44.2 3.4 23 180-202 4-26 (270)
392 1a7j_A Phosphoribulokinase; tr 77.8 1.1 3.6E-05 45.3 2.8 25 177-201 4-28 (290)
393 3pxi_A Negative regulator of g 77.5 2.3 7.8E-05 49.6 5.9 46 157-202 491-545 (758)
394 2wji_A Ferrous iron transport 77.3 1.3 4.4E-05 40.1 3.0 22 179-200 4-25 (165)
395 2f9l_A RAB11B, member RAS onco 77.2 1.4 4.7E-05 41.4 3.3 23 179-201 6-28 (199)
396 3k1j_A LON protease, ATP-depen 77.2 1.9 6.4E-05 48.8 4.9 46 155-202 39-84 (604)
397 1vma_A Cell division protein F 77.2 1.3 4.5E-05 44.8 3.3 27 177-203 103-129 (306)
398 3be4_A Adenylate kinase; malar 77.1 1.5 5.2E-05 41.9 3.6 24 179-202 6-29 (217)
399 2pjz_A Hypothetical protein ST 77.0 1.3 4.3E-05 43.9 3.0 22 179-200 31-52 (263)
400 1e4v_A Adenylate kinase; trans 77.0 1.6 5.3E-05 41.7 3.6 23 180-202 2-24 (214)
401 2eyu_A Twitching motility prot 77.0 1.4 4.8E-05 43.5 3.3 27 176-202 23-49 (261)
402 2bbs_A Cystic fibrosis transme 76.8 1.3 4.5E-05 44.5 3.1 23 179-201 65-87 (290)
403 3t15_A Ribulose bisphosphate c 76.8 1.7 5.8E-05 43.9 4.0 24 179-202 37-60 (293)
404 2v9p_A Replication protein E1; 76.8 1.3 4.6E-05 44.6 3.1 27 176-202 124-150 (305)
405 2xb4_A Adenylate kinase; ATP-b 76.8 1.5 5.2E-05 42.1 3.5 23 180-202 2-24 (223)
406 1tq4_A IIGP1, interferon-induc 76.7 2 6.8E-05 45.5 4.6 33 168-200 57-91 (413)
407 3kta_A Chromosome segregation 76.4 1.5 5.1E-05 40.5 3.2 23 179-201 27-49 (182)
408 2vp4_A Deoxynucleoside kinase; 76.4 0.96 3.3E-05 43.8 2.0 25 177-201 19-43 (230)
409 4eaq_A DTMP kinase, thymidylat 76.3 2.9 0.0001 40.3 5.4 26 179-204 27-52 (229)
410 1zu4_A FTSY; GTPase, signal re 76.3 1.4 5E-05 44.9 3.3 27 177-203 104-130 (320)
411 3end_A Light-independent proto 76.2 1.4 4.9E-05 44.8 3.3 28 175-202 38-65 (307)
412 1p9r_A General secretion pathw 75.9 2.7 9.1E-05 44.7 5.3 42 161-202 150-191 (418)
413 3nh6_A ATP-binding cassette SU 75.9 1 3.5E-05 45.6 2.0 24 177-200 79-102 (306)
414 2ce2_X GTPase HRAS; signaling 75.8 1.6 5.5E-05 39.1 3.2 22 180-201 5-26 (166)
415 3tui_C Methionine import ATP-b 75.8 1.5 5.1E-05 45.5 3.2 24 178-201 54-77 (366)
416 2ged_A SR-beta, signal recogni 75.7 3 0.0001 38.7 5.2 25 177-201 47-71 (193)
417 2zej_A Dardarin, leucine-rich 75.4 1.4 4.7E-05 40.8 2.7 21 180-200 4-24 (184)
418 1ls1_A Signal recognition part 75.3 1.5 5.2E-05 44.2 3.1 27 177-203 97-123 (295)
419 2dyk_A GTP-binding protein; GT 75.3 1.8 6.2E-05 38.6 3.4 23 179-201 2-24 (161)
420 3umf_A Adenylate kinase; rossm 75.2 2 6.9E-05 40.9 3.8 27 176-202 27-53 (217)
421 3con_A GTPase NRAS; structural 75.0 1.6 5.6E-05 40.4 3.1 22 180-201 23-44 (190)
422 1svm_A Large T antigen; AAA+ f 74.8 3.6 0.00012 43.0 5.9 26 176-201 167-192 (377)
423 1ak2_A Adenylate kinase isoenz 74.8 1.8 6.2E-05 41.9 3.5 24 179-202 17-40 (233)
424 1q3t_A Cytidylate kinase; nucl 74.6 2 7E-05 41.6 3.8 24 178-201 16-39 (236)
425 3ld9_A DTMP kinase, thymidylat 74.6 4.9 0.00017 38.4 6.3 29 176-204 19-47 (223)
426 2w0m_A SSO2452; RECA, SSPF, un 74.5 1.7 5.9E-05 41.9 3.2 24 179-202 24-47 (235)
427 1z2a_A RAS-related protein RAB 74.3 1.8 6.1E-05 39.0 3.1 23 179-201 6-28 (168)
428 2wjg_A FEOB, ferrous iron tran 74.3 1.8 6.1E-05 40.0 3.2 22 179-200 8-29 (188)
429 3fvq_A Fe(3+) IONS import ATP- 74.2 1.8 6.1E-05 44.8 3.3 23 179-201 31-53 (359)
430 1cp2_A CP2, nitrogenase iron p 73.9 1.7 5.8E-05 43.2 3.1 24 179-202 2-25 (269)
431 3t1o_A Gliding protein MGLA; G 73.8 1.8 6.2E-05 40.3 3.1 21 180-200 16-36 (198)
432 3crm_A TRNA delta(2)-isopenten 73.7 2 6.9E-05 43.6 3.5 23 179-201 6-28 (323)
433 1zj6_A ADP-ribosylation factor 73.6 3.3 0.00011 38.2 4.9 33 167-200 6-38 (187)
434 3cf2_A TER ATPase, transitiona 73.5 3.8 0.00013 47.3 6.1 48 155-202 202-262 (806)
435 4tmk_A Protein (thymidylate ki 73.3 6.6 0.00023 37.2 6.9 27 179-205 4-30 (213)
436 1nlf_A Regulatory protein REPA 73.2 1.8 6.3E-05 43.3 3.1 24 179-202 31-54 (279)
437 1r6b_X CLPA protein; AAA+, N-t 73.2 3.6 0.00012 48.0 6.0 46 157-202 458-512 (758)
438 1z47_A CYSA, putative ABC-tran 73.0 1.9 6.5E-05 44.6 3.2 23 179-201 42-64 (355)
439 2v3c_C SRP54, signal recogniti 72.9 1.6 5.5E-05 46.7 2.7 25 178-202 99-123 (432)
440 2ocp_A DGK, deoxyguanosine kin 72.9 2.2 7.6E-05 41.5 3.6 24 179-202 3-26 (241)
441 1fzq_A ADP-ribosylation factor 72.7 2.6 8.8E-05 38.8 3.8 25 176-200 14-38 (181)
442 1c1y_A RAS-related protein RAP 72.7 2.1 7E-05 38.5 3.1 22 180-201 5-26 (167)
443 1ltq_A Polynucleotide kinase; 72.6 2 6.9E-05 43.5 3.3 22 179-200 3-24 (301)
444 4gzl_A RAS-related C3 botulinu 72.6 2.1 7.2E-05 40.3 3.2 31 171-201 23-53 (204)
445 2gj8_A MNME, tRNA modification 72.4 2.1 7E-05 39.1 3.0 22 179-200 5-26 (172)
446 1u8z_A RAS-related protein RAL 72.4 2.1 7.2E-05 38.4 3.1 23 179-201 5-27 (168)
447 1moz_A ARL1, ADP-ribosylation 72.2 2.2 7.6E-05 39.1 3.3 32 168-199 7-39 (183)
448 1f6b_A SAR1; gtpases, N-termin 72.1 3 0.0001 39.1 4.2 31 169-199 15-46 (198)
449 2j37_W Signal recognition part 72.0 2.8 9.7E-05 45.6 4.4 27 177-203 100-126 (504)
450 2yyz_A Sugar ABC transporter, 71.9 2.1 7.2E-05 44.4 3.2 24 178-201 29-52 (359)
451 1r8s_A ADP-ribosylation factor 71.9 2.3 8E-05 38.1 3.3 22 180-201 2-23 (164)
452 1m7b_A RND3/RHOE small GTP-bin 71.9 2.2 7.7E-05 39.3 3.2 23 179-201 8-30 (184)
453 1cr0_A DNA primase/helicase; R 71.7 2.2 7.5E-05 43.1 3.3 27 178-204 35-61 (296)
454 3lv8_A DTMP kinase, thymidylat 71.7 7 0.00024 37.7 6.7 26 179-204 28-53 (236)
455 2it1_A 362AA long hypothetical 71.7 2.1 7.2E-05 44.4 3.2 24 178-201 29-52 (362)
456 1pzn_A RAD51, DNA repair and r 71.6 4.4 0.00015 41.9 5.7 43 178-220 131-177 (349)
457 1z08_A RAS-related protein RAB 71.6 2.2 7.6E-05 38.4 3.1 22 180-201 8-29 (170)
458 2afh_E Nitrogenase iron protei 71.5 2.1 7.1E-05 43.1 3.1 24 179-202 3-26 (289)
459 2obl_A ESCN; ATPase, hydrolase 71.4 2.3 8E-05 43.9 3.5 24 179-202 72-95 (347)
460 3q72_A GTP-binding protein RAD 71.4 2.1 7.3E-05 38.4 2.9 20 180-199 4-23 (166)
461 2qtf_A Protein HFLX, GTP-bindi 71.4 4.9 0.00017 41.8 5.9 25 176-200 177-201 (364)
462 1g29_1 MALK, maltose transport 71.1 2.2 7.6E-05 44.5 3.2 23 179-201 30-52 (372)
463 2fn4_A P23, RAS-related protei 70.9 2.4 8.2E-05 38.7 3.2 23 179-201 10-32 (181)
464 1nrj_B SR-beta, signal recogni 70.8 2.8 9.7E-05 39.8 3.8 26 176-201 10-35 (218)
465 3rlf_A Maltose/maltodextrin im 70.8 2.3 7.8E-05 44.4 3.2 23 179-201 30-52 (381)
466 1v43_A Sugar-binding transport 70.7 2.3 7.8E-05 44.4 3.2 24 178-201 37-60 (372)
467 1ek0_A Protein (GTP-binding pr 70.7 2.4 8.3E-05 38.1 3.1 22 180-201 5-26 (170)
468 2qnr_A Septin-2, protein NEDD5 70.6 2 6.7E-05 43.6 2.6 21 180-200 20-40 (301)
469 3jvv_A Twitching mobility prot 70.4 3.6 0.00012 42.7 4.6 29 174-202 119-147 (356)
470 1z0j_A RAB-22, RAS-related pro 70.4 2.5 8.4E-05 38.1 3.1 22 180-201 8-29 (170)
471 3ihw_A Centg3; RAS, centaurin, 70.4 2.4 8.4E-05 39.1 3.1 22 179-200 21-42 (184)
472 1kao_A RAP2A; GTP-binding prot 70.3 2.5 8.5E-05 37.9 3.1 22 180-201 5-26 (167)
473 2erx_A GTP-binding protein DI- 70.1 2.4 8.1E-05 38.3 2.9 21 180-200 5-25 (172)
474 1svi_A GTP-binding protein YSX 70.0 2.9 9.8E-05 38.8 3.5 25 176-200 21-45 (195)
475 1m2o_B GTP-binding protein SAR 69.9 2.6 9E-05 39.1 3.2 23 178-200 23-45 (190)
476 2p67_A LAO/AO transport system 69.9 4.7 0.00016 41.6 5.4 28 175-202 53-80 (341)
477 2nzj_A GTP-binding protein REM 69.8 2.8 9.6E-05 38.0 3.4 22 179-200 5-26 (175)
478 1r2q_A RAS-related protein RAB 69.7 2.6 9E-05 37.9 3.1 22 180-201 8-29 (170)
479 1ky3_A GTP-binding protein YPT 69.7 2.6 8.8E-05 38.5 3.1 24 178-201 8-31 (182)
480 3c5c_A RAS-like protein 12; GD 69.7 2.6 8.8E-05 39.0 3.1 23 179-201 22-44 (187)
481 3dz8_A RAS-related protein RAB 69.3 2.9 9.9E-05 38.8 3.4 24 179-202 24-47 (191)
482 2www_A Methylmalonic aciduria 69.3 2.6 9E-05 43.7 3.3 26 177-202 73-98 (349)
483 1z0f_A RAB14, member RAS oncog 69.3 2.7 9.2E-05 38.3 3.1 23 179-201 16-38 (179)
484 1wms_A RAB-9, RAB9, RAS-relate 69.3 2.7 9.1E-05 38.3 3.1 23 179-201 8-30 (177)
485 3kkq_A RAS-related protein M-R 69.2 2.7 9.2E-05 38.6 3.1 23 179-201 19-41 (183)
486 3q85_A GTP-binding protein REM 69.2 2.7 9.2E-05 37.9 3.1 20 180-199 4-23 (169)
487 1g16_A RAS-related protein SEC 69.2 2.8 9.7E-05 37.7 3.2 21 180-200 5-25 (170)
488 3llu_A RAS-related GTP-binding 69.1 2.2 7.6E-05 39.8 2.5 23 178-200 20-42 (196)
489 1lw7_A Transcriptional regulat 69.1 2.2 7.6E-05 44.6 2.8 25 178-202 170-194 (365)
490 3exa_A TRNA delta(2)-isopenten 69.1 2.8 9.7E-05 42.2 3.3 23 179-201 4-26 (322)
491 3d31_A Sulfate/molybdate ABC t 69.0 1.9 6.7E-05 44.4 2.2 23 179-201 27-49 (348)
492 2lkc_A Translation initiation 69.0 3 0.0001 37.9 3.4 24 177-200 7-30 (178)
493 1pui_A ENGB, probable GTP-bind 68.9 1.6 5.5E-05 41.3 1.5 24 176-199 24-47 (210)
494 3sr0_A Adenylate kinase; phosp 68.6 3.2 0.00011 39.2 3.5 23 180-202 2-24 (206)
495 4dsu_A GTPase KRAS, isoform 2B 68.6 2.8 9.5E-05 38.6 3.1 22 180-201 6-27 (189)
496 1upt_A ARL1, ADP-ribosylation 68.6 2.9 9.8E-05 37.7 3.1 22 179-200 8-29 (171)
497 2b6h_A ADP-ribosylation factor 68.5 2.5 8.5E-05 39.4 2.7 25 175-199 26-50 (192)
498 3cbq_A GTP-binding protein REM 68.5 2.1 7.3E-05 40.0 2.2 21 178-198 23-43 (195)
499 3oes_A GTPase rhebl1; small GT 68.4 2.9 0.0001 39.2 3.2 25 177-201 23-47 (201)
500 3tw8_B RAS-related protein RAB 68.4 2.5 8.7E-05 38.5 2.7 22 179-200 10-31 (181)
No 1
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=4.3e-33 Score=324.27 Aligned_cols=477 Identities=19% Similarity=0.184 Sum_probs=230.4
Q ss_pred CCceeeecCCCcccCCc-c-cccccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCC
Q 003090 235 LTGISLMFNDIHEVPDE-L-ECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFL 312 (848)
Q Consensus 235 l~~l~l~~n~l~~lp~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 312 (848)
++.|++++|.+..++.. + ++++|++|++++|.+..+++..|.++++|++|++++ +.+...
T Consensus 34 l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~--------------n~l~~~---- 95 (606)
T 3vq2_A 34 TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTG--------------NPIQSF---- 95 (606)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT--------------CCCCCC----
T ss_pred cCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCC--------------Cccccc----
Confidence 44555555555544442 2 455555555555555554444445555555555555 444442
Q ss_pred CCchhhhcccCcEEEccCccccCCc-hhhccccCCCEEEccCCCCc--ccChhhccCCcccEEeccCCccccccChhhhh
Q 003090 313 LPSSLSFLINLRTLRLHDRRIQGDL-SLIGELSGLEILDLSESDVS--EIPVSFGRLSHLRLLDLTGCYILELIPRGVLS 389 (848)
Q Consensus 313 lp~~~~~l~~L~~L~L~~~~~~~~~-~~i~~l~~L~~L~l~~~~l~--~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~l~ 389 (848)
.|..++++++|++|++++|.+...+ ..++++++|++|++++|.+. .+|..++++++|++|++++|...+..|.. ++
T Consensus 96 ~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~ 174 (606)
T 3vq2_A 96 SPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVND-LQ 174 (606)
T ss_dssp CTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTT-TH
T ss_pred ChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhh-hh
Confidence 2445555555555555555444443 34555555555555555554 34555555555555555554443322222 44
Q ss_pred cccccc----EEeccccccccccccccccccCcccchhhhcccCCCcEEEeeccCCC--CCCCCC-ccCCCCeEEEEeCC
Q 003090 390 RLRKLE----ELYMSHSFRHWQFESESEEDSSSNAKFIELGALSRLTSLHIHIPEGK--IMPSDM-SFQNLTSFSIAIGD 462 (848)
Q Consensus 390 ~l~~L~----~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~--~~~~~~-~~~~L~~L~l~~~~ 462 (848)
.+++|+ +|++++|.+... +.......+|+.|++++|.+. ..+..+ .+++|+.+.+..+.
T Consensus 175 ~l~~L~~~l~~L~l~~n~l~~~--------------~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~ 240 (606)
T 3vq2_A 175 FLRENPQVNLSLDMSLNPIDFI--------------QDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGE 240 (606)
T ss_dssp HHHHCTTCCCEEECTTCCCCEE--------------CTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEEC
T ss_pred hhhccccccceeeccCCCccee--------------CcccccCceeeeeeccCCccchhHHHHHhccccccccccccccc
Confidence 444433 455555544332 111112224555555555432 112222 34444444443222
Q ss_pred CCC---------CCCCcccceEEecccc-cccccccCccccchhhHHHHHHHHHhhcceeeeccccccccccccccccCC
Q 003090 463 LEE---------RPLSDFIGLFLQKFKK-RCSRAMGLSQDMRISALHSWIKNLLLRSEILALAEVNYFENIVSDLANDGF 532 (848)
Q Consensus 463 ~~~---------~~~~~l~~l~l~~~~~-~c~~~~~l~~~~~l~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l 532 (848)
... .....+..+.+....- .+..+. ..+|. ...+++|+.|.+.++... .++ .+ ..+
T Consensus 241 ~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~--------~~~~~--~~~l~~L~~L~l~~~~~~-~l~-~l--~~~ 306 (606)
T 3vq2_A 241 FKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFS--------DDIVK--FHCLANVSAMSLAGVSIK-YLE-DV--PKH 306 (606)
T ss_dssp CTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCC--------GGGGS--CGGGTTCSEEEEESCCCC-CCC-CC--CTT
T ss_pred cccCCcccccChHHhhhhhhccHhheecccccccc--------ccccc--cccCCCCCEEEecCccch-hhh-hc--ccc
Confidence 100 0001111111111110 000010 01111 122578888888877653 333 22 567
Q ss_pred CCCcEEEEecCCCceeecccccccccccCCCccEEecccccccccccccccccccCCCcceEEEecCchhhHhh---hHH
Q 003090 533 NELMFLVIFRCNEMKYLLNSLERTLRVTLHKLEWLFIRENQNFVEICHGQLPAGCLSNVKRSDVVDCGSILKIL---LSH 609 (848)
Q Consensus 533 ~~L~~L~l~~~~~l~~l~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~l---~~~ 609 (848)
++|++|++.+|.. +.++ .. .+++|++|+++++..+.. .+.+.+++|+.|++++|. + ..+ |.
T Consensus 307 ~~L~~L~l~~n~l-~~lp------~~-~l~~L~~L~l~~n~~~~~-----~~~~~l~~L~~L~ls~n~-l-~~~~~~~~- 370 (606)
T 3vq2_A 307 FKWQSLSIIRCQL-KQFP------TL-DLPFLKSLTLTMNKGSIS-----FKKVALPSLSYLDLSRNA-L-SFSGCCSY- 370 (606)
T ss_dssp CCCSEEEEESCCC-SSCC------CC-CCSSCCEEEEESCSSCEE-----CCCCCCTTCCEEECCSSC-E-EEEEECCH-
T ss_pred ccCCEEEcccccC-cccc------cC-CCCccceeeccCCcCccc-----hhhccCCCCCEEECcCCc-c-CCCcchhh-
Confidence 8899999998865 4432 22 688888888888865443 244568888888888864 3 333 33
Q ss_pred HHHhhccCcEEEEeccCCceeeeeccccccccccccccCCcCEEecCCCccccccccCCCccccccCccEEEeecCcccc
Q 003090 610 LVQSFQNLQRLRVYSCGLLVSVFEIERVNIAKEETELFSSLEKLTLWDLPRMTDIWKGDTQFVSLHNLKKVRVEECDELR 689 (848)
Q Consensus 610 ~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~l~~l~~L~~L~i~~C~~L~ 689 (848)
....+++|++|++++|. ++.++ ..+..+++|++|+++++.-....+.. .+..+++|+.|++++|. ++
T Consensus 371 ~~~~~~~L~~L~L~~n~-l~~~~---------~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~~l~~L~~L~l~~n~-l~ 437 (606)
T 3vq2_A 371 SDLGTNSLRHLDLSFNG-AIIMS---------ANFMGLEELQHLDFQHSTLKRVTEFS--AFLSLEKLLYLDISYTN-TK 437 (606)
T ss_dssp HHHCCSCCCEEECCSCS-EEEEC---------CCCTTCTTCCEEECTTSEEESTTTTT--TTTTCTTCCEEECTTSC-CE
T ss_pred hhccCCcccEeECCCCc-cccch---------hhccCCCCCCeeECCCCccCCccChh--hhhccccCCEEECcCCC-CC
Confidence 33778888888888876 44443 23445566666666655322221111 13445555555555543 22
Q ss_pred ccccCccccccccceee-----------------eccccccceeeeecC---CCCCCCCCCCCccEEEEecCCCCceecc
Q 003090 690 QVFPANFGKKAAAEEMV-----------------LYRKRRDQIHIHATT---STSSPTPSLGNLVSITIRGCGKLRNLFT 749 (848)
Q Consensus 690 ~~~p~~~~~~~~~~~l~-----------------l~~l~~~~l~i~~c~---~~~~~~~~l~~L~~L~i~~C~~L~~l~~ 749 (848)
...|..+......+.+. +++| +.+++.+|. ..+..+..+++|++|++++| +++.+++
T Consensus 438 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L--~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~ 514 (606)
T 3vq2_A 438 IDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNL--TFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN-NLLFLDS 514 (606)
T ss_dssp ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC--CEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCEEG
T ss_pred ccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCC--CEEECCCCcCCccChhhhcccccCCEEECCCC-cCCCcCH
Confidence 22232222110001111 2223 333343331 12334555666666666665 4444433
Q ss_pred cchhhccccccEEEEecccccceeecCCcccccccCCCccceecc-ccccccccccc
Q 003090 750 TSMVKSLVRLESLEVRSCPTLQEIIMDDEGEVGLQGASTKKITFP-SLFGIKLCDLD 805 (848)
Q Consensus 750 ~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~~l~~~~~~~~~~~-sL~~L~i~~cp 805 (848)
..+.++++|++|++++|. ++.++.. +.. ++ +|++|++.++|
T Consensus 515 -~~~~~l~~L~~L~l~~N~-l~~~p~~------~~~-------l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 515 -SHYNQLYSLSTLDCSFNR-IETSKGI------LQH-------FPKSLAFFNLTNNS 556 (606)
T ss_dssp -GGTTTCTTCCEEECTTSC-CCCEESC------GGG-------SCTTCCEEECCSCC
T ss_pred -HHccCCCcCCEEECCCCc-CcccCHh------Hhh-------hcccCcEEEccCCC
Confidence 345566666666666664 4444221 111 33 57777777766
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4.7e-32 Score=322.53 Aligned_cols=197 Identities=21% Similarity=0.265 Sum_probs=129.2
Q ss_pred ccCCCceeeecCCCcccCCcccccccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCC
Q 003090 232 WLDLTGISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLF 311 (848)
Q Consensus 232 ~~~l~~l~l~~n~l~~lp~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~ 311 (848)
...++.|++++|.+....+...+++|++|++++|.+...++. +.++++|++|++++ +.+.+.
T Consensus 177 l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~--------------n~l~~~--- 238 (768)
T 3rgz_A 177 CGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISG--------------NKLSGD--- 238 (768)
T ss_dssp CTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCS--------------SCCCSC---
T ss_pred CCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcC--------------CcCCCc---
Confidence 344666666666665444444666677777776655443333 56667777777776 666654
Q ss_pred CCCchhhhcccCcEEEccCccccCCchhhccccCCCEEEccCCCCc-ccChhhccC-CcccEEeccCCccccccChhhhh
Q 003090 312 LLPSSLSFLINLRTLRLHDRRIQGDLSLIGELSGLEILDLSESDVS-EIPVSFGRL-SHLRLLDLTGCYILELIPRGVLS 389 (848)
Q Consensus 312 ~lp~~~~~l~~L~~L~L~~~~~~~~~~~i~~l~~L~~L~l~~~~l~-~lp~~i~~L-~~L~~L~l~~~~~~~~~p~~~l~ 389 (848)
.|..++.+++|++|++++|.+.+..+.. .+++|++|++++|.++ .+|..+..+ ++|++|++++|...+.+|.. ++
T Consensus 239 -~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~-~~ 315 (768)
T 3rgz_A 239 -FSRAISTCTELKLLNISSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF-FG 315 (768)
T ss_dssp -HHHHTTTCSSCCEEECCSSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGG-GG
T ss_pred -ccHHHhcCCCCCEEECCCCcccCccCcc-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchH-Hh
Confidence 6667777777777777777665544333 6777777777777776 667666664 77777777777766666666 67
Q ss_pred ccccccEEeccccccccccccccccccCcccchh-hhcccCCCcEEEeeccCCC-CCCCCC-ccC-CCCeEEEEeCC
Q 003090 390 RLRKLEELYMSHSFRHWQFESESEEDSSSNAKFI-ELGALSRLTSLHIHIPEGK-IMPSDM-SFQ-NLTSFSIAIGD 462 (848)
Q Consensus 390 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~-~L~~l~~L~~L~l~~~~~~-~~~~~~-~~~-~L~~L~l~~~~ 462 (848)
++++|++|++++|.+.+. .+. .++++++|+.|++++|.+. .+|..+ .+. +|+.|++..+.
T Consensus 316 ~l~~L~~L~L~~n~l~~~-------------ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~ 379 (768)
T 3rgz_A 316 SCSLLESLALSSNNFSGE-------------LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNN 379 (768)
T ss_dssp GCTTCCEEECCSSEEEEE-------------CCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSE
T ss_pred cCCCccEEECCCCcccCc-------------CCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCC
Confidence 777777777777766544 233 3777777777777777765 566655 454 77777776443
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=9e-32 Score=320.12 Aligned_cols=95 Identities=13% Similarity=-0.017 Sum_probs=57.0
Q ss_pred cCCCcceEEEecCchhhHhhhHHHHHhhccCcEEEEeccCCceeeeeccccccccccccccCCcCEEecCCCcccccccc
Q 003090 587 CLSNVKRSDVVDCGSILKILLSHLVQSFQNLQRLRVYSCGLLVSVFEIERVNIAKEETELFSSLEKLTLWDLPRMTDIWK 666 (848)
Q Consensus 587 ~l~~L~~L~l~~c~~l~~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~ 666 (848)
.+++|+.|++.+|.-. ..+|..+ ..+++|++|++++|.-...+| ..+..+++|++|++++|.-...+|.
T Consensus 464 ~l~~L~~L~L~~N~l~-~~~p~~l-~~l~~L~~L~L~~N~l~~~~p---------~~~~~l~~L~~L~L~~N~l~~~~p~ 532 (768)
T 3rgz_A 464 YVKTLETLILDFNDLT-GEIPSGL-SNCTNLNWISLSNNRLTGEIP---------KWIGRLENLAILKLSNNSFSGNIPA 532 (768)
T ss_dssp GCTTCCEEECCSSCCC-SCCCGGG-GGCTTCCEEECCSSCCCSCCC---------GGGGGCTTCCEEECCSSCCEEECCG
T ss_pred CCCCceEEEecCCccc-CcCCHHH-hcCCCCCEEEccCCccCCcCC---------hHHhcCCCCCEEECCCCcccCcCCH
Confidence 4566666666665433 3444432 556666666666665443443 4566778888888887765445544
Q ss_pred CCCccccccCccEEEeecCccccccccCcc
Q 003090 667 GDTQFVSLHNLKKVRVEECDELRQVFPANF 696 (848)
Q Consensus 667 ~~~~l~~l~~L~~L~i~~C~~L~~~~p~~~ 696 (848)
. +..+++|+.|++++|+-... +|..+
T Consensus 533 ~---l~~l~~L~~L~Ls~N~l~g~-ip~~~ 558 (768)
T 3rgz_A 533 E---LGDCRSLIWLDLNTNLFNGT-IPAAM 558 (768)
T ss_dssp G---GGGCTTCCEEECCSSEEESB-CCGGG
T ss_pred H---HcCCCCCCEEECCCCccCCc-CChHH
Confidence 3 56788888888888753333 34433
No 4
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.98 E-value=4.1e-31 Score=307.58 Aligned_cols=465 Identities=16% Similarity=0.123 Sum_probs=317.4
Q ss_pred EEEEEeccCCchhHHHH-HHHhccCCCceeeecCCCcccCCc-c-cccccceeecccCcCcccChHHHccCCceeEEEcc
Q 003090 211 VAMAVVSQTPSITKIQY-EIAGWLDLTGISLMFNDIHEVPDE-L-ECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLG 287 (848)
Q Consensus 211 ~~wv~vs~~~~~~~l~~-~i~~~~~l~~l~l~~n~l~~lp~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~ 287 (848)
...+.++. ..+..+.. .+.....++.|++++|.+..+++. + .+++|++|++++|.+..+++..|.++++|++|+++
T Consensus 34 l~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 112 (606)
T 3vq2_A 34 TKNIDLSF-NPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAV 112 (606)
T ss_dssp CCEEECTT-SCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECT
T ss_pred cCEEECCC-CCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEcc
Confidence 33445555 33444443 455566799999999999988654 4 89999999999999988866667999999999999
Q ss_pred CcccccccccCCCCCCCCCCCCCCCCCchhhhcccCcEEEccCccccC--CchhhccccCCCEEEccCCCCccc-Chhhc
Q 003090 288 GIRRFSFSVRFPFLFPPLPSSPLFLLPSSLSFLINLRTLRLHDRRIQG--DLSLIGELSGLEILDLSESDVSEI-PVSFG 364 (848)
Q Consensus 288 ~~~~~~~~~~~~~~~~~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~--~~~~i~~l~~L~~L~l~~~~l~~l-p~~i~ 364 (848)
+ +.+... .|..++++++|++|++++|.+.. .+..++++++|++|++++|.++.+ |..++
T Consensus 113 ~--------------n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 174 (606)
T 3vq2_A 113 E--------------TKLASL----ESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQ 174 (606)
T ss_dssp T--------------SCCCCS----SSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTH
T ss_pred C--------------Cccccc----cccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhh
Confidence 9 888773 34779999999999999998875 468899999999999999999966 44577
Q ss_pred cCCccc----EEeccCCccccccChhhhhccccccEEecccccccccccc-----cc----------------c------
Q 003090 365 RLSHLR----LLDLTGCYILELIPRGVLSRLRKLEELYMSHSFRHWQFES-----ES----------------E------ 413 (848)
Q Consensus 365 ~L~~L~----~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~-----~~----------------~------ 413 (848)
.+.+|+ +|++++|.. ..+|... ....+|+.|++++|.+.+.... .. .
T Consensus 175 ~l~~L~~~l~~L~l~~n~l-~~~~~~~-~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~ 252 (606)
T 3vq2_A 175 FLRENPQVNLSLDMSLNPI-DFIQDQA-FQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEP 252 (606)
T ss_dssp HHHHCTTCCCEEECTTCCC-CEECTTT-TTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCG
T ss_pred hhhccccccceeeccCCCc-ceeCccc-ccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccCh
Confidence 777665 899999866 4567663 4445999999999876421000 00 0
Q ss_pred -----------------cccCcccchhhhcccCCCcEEEeeccCCCCCCCCC-ccCCCCeEEEEeCCCCCCCCCcccceE
Q 003090 414 -----------------EDSSSNAKFIELGALSRLTSLHIHIPEGKIMPSDM-SFQNLTSFSIAIGDLEERPLSDFIGLF 475 (848)
Q Consensus 414 -----------------~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~l~ 475 (848)
...........+..+++|+.|+++++.+..++ .+ .+++|+.|.+..+..
T Consensus 253 ~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l------------ 319 (606)
T 3vq2_A 253 SIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQL------------ 319 (606)
T ss_dssp GGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCC------------
T ss_pred HHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhh-hccccccCCEEEcccccC------------
Confidence 00011111222556667777777777766666 33 666777777765443
Q ss_pred EecccccccccccCccccchhhHHHHHHHHHhhcceeeeccccccccccccccccCCCCCcEEEEecCCCceeecccccc
Q 003090 476 LQKFKKRCSRAMGLSQDMRISALHSWIKNLLLRSEILALAEVNYFENIVSDLANDGFNELMFLVIFRCNEMKYLLNSLER 555 (848)
Q Consensus 476 l~~~~~~c~~~~~l~~~~~l~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~l~~~~~~ 555 (848)
..+|.+ .+++|+.|++.++...... ....+++|++|+++++.. +.+.. ..
T Consensus 320 --------------------~~lp~~---~l~~L~~L~l~~n~~~~~~----~~~~l~~L~~L~ls~n~l-~~~~~--~~ 369 (606)
T 3vq2_A 320 --------------------KQFPTL---DLPFLKSLTLTMNKGSISF----KKVALPSLSYLDLSRNAL-SFSGC--CS 369 (606)
T ss_dssp --------------------SSCCCC---CCSSCCEEEEESCSSCEEC----CCCCCTTCCEEECCSSCE-EEEEE--CC
T ss_pred --------------------cccccC---CCCccceeeccCCcCccch----hhccCCCCCEEECcCCcc-CCCcc--hh
Confidence 111100 1477888888887655433 234778899999888743 22100 01
Q ss_pred cccccCCCccEEecccccccccccccccccccCCCcceEEEecCchhhHhhhHHHHHhhccCcEEEEeccCCceeeeecc
Q 003090 556 TLRVTLHKLEWLFIRENQNFVEICHGQLPAGCLSNVKRSDVVDCGSILKILLSHLVQSFQNLQRLRVYSCGLLVSVFEIE 635 (848)
Q Consensus 556 ~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~~~ 635 (848)
.....+++|++|+++++. +..+. .....+++|+.|++.+|.-. ...|...+..+++|++|++++|.-....+
T Consensus 370 ~~~~~~~~L~~L~L~~n~-l~~~~---~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--- 441 (606)
T 3vq2_A 370 YSDLGTNSLRHLDLSFNG-AIIMS---ANFMGLEELQHLDFQHSTLK-RVTEFSAFLSLEKLLYLDISYTNTKIDFD--- 441 (606)
T ss_dssp HHHHCCSCCCEEECCSCS-EEEEC---CCCTTCTTCCEEECTTSEEE-STTTTTTTTTCTTCCEEECTTSCCEECCT---
T ss_pred hhhccCCcccEeECCCCc-cccch---hhccCCCCCCeeECCCCccC-CccChhhhhccccCCEEECcCCCCCccch---
Confidence 234567889999998884 44432 22346888999999887544 33332334678889999998887544343
Q ss_pred ccccccccccccCCcCEEecCCCccccc-cccCCCccccccCccEEEeecCccccccccCccccccccceeeeccccccc
Q 003090 636 RVNIAKEETELFSSLEKLTLWDLPRMTD-IWKGDTQFVSLHNLKKVRVEECDELRQVFPANFGKKAAAEEMVLYRKRRDQ 714 (848)
Q Consensus 636 ~~~~~~~~~~~l~~L~~L~l~~c~~L~~-l~~~~~~l~~l~~L~~L~i~~C~~L~~~~p~~~~~~~~~~~l~l~~l~~~~ 714 (848)
..+..+++|++|++++|.-... ++. .+..+++|++|++++| +++.+.|..+.. +++| +.
T Consensus 442 ------~~~~~l~~L~~L~l~~n~l~~~~~~~---~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~--------l~~L--~~ 501 (606)
T 3vq2_A 442 ------GIFLGLTSLNTLKMAGNSFKDNTLSN---VFANTTNLTFLDLSKC-QLEQISWGVFDT--------LHRL--QL 501 (606)
T ss_dssp ------TTTTTCTTCCEEECTTCEEGGGEECS---CCTTCTTCCEEECTTS-CCCEECTTTTTT--------CTTC--CE
T ss_pred ------hhhcCCCCCCEEECCCCcCCCcchHH---hhccCCCCCEEECCCC-cCCccChhhhcc--------cccC--CE
Confidence 4567788899999988753332 232 2567888999999887 455555554433 3334 45
Q ss_pred eeeeecC---CCCCCCCCCCCccEEEEecCCCCceecccchhhccc-cccEEEEeccccc
Q 003090 715 IHIHATT---STSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLV-RLESLEVRSCPTL 770 (848)
Q Consensus 715 l~i~~c~---~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~-~L~~L~i~~C~~L 770 (848)
+++.+|. ..+..+..+++|++|++++| +++.+|.. +..++ +|++|+++++|-.
T Consensus 502 L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~p~~--~~~l~~~L~~l~l~~N~~~ 558 (606)
T 3vq2_A 502 LNMSHNNLLFLDSSHYNQLYSLSTLDCSFN-RIETSKGI--LQHFPKSLAFFNLTNNSVA 558 (606)
T ss_dssp EECCSSCCSCEEGGGTTTCTTCCEEECTTS-CCCCEESC--GGGSCTTCCEEECCSCCCC
T ss_pred EECCCCcCCCcCHHHccCCCcCCEEECCCC-cCcccCHh--HhhhcccCcEEEccCCCcc
Confidence 5555541 12456788999999999997 58888753 77786 6999999998743
No 5
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=1.8e-30 Score=300.03 Aligned_cols=493 Identities=19% Similarity=0.231 Sum_probs=289.7
Q ss_pred CCceeeecCCCcccCCc-c-cccccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCC
Q 003090 235 LTGISLMFNDIHEVPDE-L-ECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFL 312 (848)
Q Consensus 235 l~~l~l~~n~l~~lp~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 312 (848)
++.|++++|.+..++.. + .+++|++|++++|.+..+++..|.++++|++|++++ +.+...
T Consensus 30 l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~--------------n~l~~~---- 91 (570)
T 2z63_A 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG--------------NPIQSL---- 91 (570)
T ss_dssp CCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTT--------------CCCCEE----
T ss_pred ccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcC--------------CcCCcc----
Confidence 45566666666655442 2 566666666666666555555556666666666666 555542
Q ss_pred CCchhhhcccCcEEEccCccccCCc-hhhccccCCCEEEccCCCCcc--cChhhccCCcccEEeccCCccccccChhhhh
Q 003090 313 LPSSLSFLINLRTLRLHDRRIQGDL-SLIGELSGLEILDLSESDVSE--IPVSFGRLSHLRLLDLTGCYILELIPRGVLS 389 (848)
Q Consensus 313 lp~~~~~l~~L~~L~L~~~~~~~~~-~~i~~l~~L~~L~l~~~~l~~--lp~~i~~L~~L~~L~l~~~~~~~~~p~~~l~ 389 (848)
.|..++.+++|++|++++|.+...+ ..++++++|++|++++|.+.. +|..++++++|++|++++|......|.. ++
T Consensus 92 ~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~-~~ 170 (570)
T 2z63_A 92 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD-LR 170 (570)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGG-GH
T ss_pred CHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHH-cc
Confidence 2345666666666666666555444 245666666666666666553 4566666666666666665443322333 55
Q ss_pred ccccc----cEEeccccccccccccccccccCcccchhhhcccCCCcEEEeeccCCC--CCCCCC-ccCCCCeEEEEeCC
Q 003090 390 RLRKL----EELYMSHSFRHWQFESESEEDSSSNAKFIELGALSRLTSLHIHIPEGK--IMPSDM-SFQNLTSFSIAIGD 462 (848)
Q Consensus 390 ~l~~L----~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~--~~~~~~-~~~~L~~L~l~~~~ 462 (848)
.+++| +.|++++|.+... .+..+..+ +|+.|++++|... .++..+ .+++++.+.+..+.
T Consensus 171 ~l~~L~~~~~~L~l~~n~l~~~-------------~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~ 236 (570)
T 2z63_A 171 VLHQMPLLNLSLDLSLNPMNFI-------------QPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGE 236 (570)
T ss_dssp HHHTCTTCCCEEECTTCCCCEE-------------CTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEE
T ss_pred chhccchhhhhcccCCCCceec-------------CHHHhccC-cceeEecccccccccchhhhhcCccccceeeecccc
Confidence 55555 5666666655443 12222222 4666666655321 111111 34444443333211
Q ss_pred CC---------CCCCCcccceEEeccc-ccccccccCccccchhhHHHHHHHHHhhcceeeeccccccccccccccccCC
Q 003090 463 LE---------ERPLSDFIGLFLQKFK-KRCSRAMGLSQDMRISALHSWIKNLLLRSEILALAEVNYFENIVSDLANDGF 532 (848)
Q Consensus 463 ~~---------~~~~~~l~~l~l~~~~-~~c~~~~~l~~~~~l~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l 532 (848)
.. ......+..+.+.... ..+..+. ...+.++. .+++|+.|++.++... .++..+ ..+
T Consensus 237 ~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~--------~~~~~~~~-~l~~L~~L~l~~~~l~-~l~~~~--~~~ 304 (570)
T 2z63_A 237 FRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYL--------DDIIDLFN-CLTNVSSFSLVSVTIE-RVKDFS--YNF 304 (570)
T ss_dssp CCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEE--------SCSTTTTG-GGTTCSEEEEESCEEC-SCCBCC--SCC
T ss_pred ccCchhhhhcchhhhccccccchhhhhhhcchhhh--------hhchhhhc-CcCcccEEEecCccch-hhhhhh--ccC
Confidence 10 0001111111111111 0000000 11111111 2578999999887644 344444 345
Q ss_pred CCCcEEEEecCCCceeecccccccccccCCCccEEecccccccccccccccccccCCCcceEEEecCchhhHhh---hHH
Q 003090 533 NELMFLVIFRCNEMKYLLNSLERTLRVTLHKLEWLFIRENQNFVEICHGQLPAGCLSNVKRSDVVDCGSILKIL---LSH 609 (848)
Q Consensus 533 ~~L~~L~l~~~~~l~~l~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~l---~~~ 609 (848)
+|+.|++.+|... .+ +...+++|++|++.++.... ..+...+++|+.|++++|. + ... |.
T Consensus 305 -~L~~L~l~~n~~~-~l-------~~~~l~~L~~L~l~~n~~~~-----~~~~~~~~~L~~L~l~~n~-l-~~~~~~~~- 367 (570)
T 2z63_A 305 -GWQHLELVNCKFG-QF-------PTLKLKSLKRLTFTSNKGGN-----AFSEVDLPSLEFLDLSRNG-L-SFKGCCSQ- 367 (570)
T ss_dssp -CCSEEEEESCBCS-SC-------CBCBCSSCCEEEEESCBSCC-----BCCCCBCTTCCEEECCSSC-C-BEEEEEEH-
T ss_pred -CccEEeeccCccc-cc-------CcccccccCEEeCcCCcccc-----ccccccCCCCCEEeCcCCc-c-Cccccccc-
Confidence 8999999988543 22 22568999999999986322 2334679999999999975 3 333 33
Q ss_pred HHHhhccCcEEEEeccCCceeeeeccccccccccccccCCcCEEecCCCccccccccCCCccccccCccEEEeecCcccc
Q 003090 610 LVQSFQNLQRLRVYSCGLLVSVFEIERVNIAKEETELFSSLEKLTLWDLPRMTDIWKGDTQFVSLHNLKKVRVEECDELR 689 (848)
Q Consensus 610 ~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~l~~l~~L~~L~i~~C~~L~ 689 (848)
....+++|++|++++|. +..++ ..+..+++|++|+++++.-....+.. .+..+++|++|++++|. +.
T Consensus 368 ~~~~~~~L~~L~l~~n~-l~~~~---------~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~~l~~L~~L~l~~n~-l~ 434 (570)
T 2z63_A 368 SDFGTTSLKYLDLSFNG-VITMS---------SNFLGLEQLEHLDFQHSNLKQMSEFS--VFLSLRNLIYLDISHTH-TR 434 (570)
T ss_dssp HHHTCSCCCEEECCSCS-EEEEE---------EEEETCTTCCEEECTTSEEESCTTSC--TTTTCTTCCEEECTTSC-CE
T ss_pred cccccCccCEEECCCCc-ccccc---------ccccccCCCCEEEccCCccccccchh--hhhcCCCCCEEeCcCCc-cc
Confidence 34789999999999986 44444 23678999999999997633322222 36789999999999985 44
Q ss_pred ccccCccccccccceeeeccccccceeeeecC----CCCCCCCCCCCccEEEEecCCCCceecccchhhccccccEEEEe
Q 003090 690 QVFPANFGKKAAAEEMVLYRKRRDQIHIHATT----STSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVR 765 (848)
Q Consensus 690 ~~~p~~~~~~~~~~~l~l~~l~~~~l~i~~c~----~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~ 765 (848)
...|..+.. +++| +.+++.+|. ..|..+..+++|+.|++++| +++.+++ ..+.++++|++|+++
T Consensus 435 ~~~~~~~~~--------l~~L--~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~ 502 (570)
T 2z63_A 435 VAFNGIFNG--------LSSL--EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSP-TAFNSLSSLQVLNMA 502 (570)
T ss_dssp ECCTTTTTT--------CTTC--CEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECT-TTTTTCTTCCEEECC
T ss_pred ccchhhhhc--------CCcC--cEEECcCCcCccccchhhhhcccCCCEEECCCC-ccccCCh-hhhhcccCCCEEeCC
Confidence 444544433 2334 555555551 35677889999999999997 5777744 467899999999999
Q ss_pred cccccceeecCCcccccccCCCccceecccccccccccccccccccCCCccc-cccccccceee
Q 003090 766 SCPTLQEIIMDDEGEVGLQGASTKKITFPSLFGIKLCDLDSLACFCSTAHHF-NFVFHLGQKIR 828 (848)
Q Consensus 766 ~C~~L~~l~~~~~~~~~l~~~~~~~~~~~sL~~L~i~~cp~L~~~~~~~~~~-~~~~i~~~~~~ 828 (848)
+|. +..++. . .+.. +++|++|+++++| +...|+....+ .|++.....+.
T Consensus 503 ~n~-l~~~~~--~---~~~~-------l~~L~~L~l~~N~-~~~~~~~~~~~~~wl~~~~~~~~ 552 (570)
T 2z63_A 503 SNQ-LKSVPD--G---IFDR-------LTSLQKIWLHTNP-WDCSCPRIDYLSRWLNKNSQKEQ 552 (570)
T ss_dssp SSC-CSCCCT--T---TTTT-------CTTCCEEECCSSC-BCCCTTTTHHHHHHHHHTGGGEE
T ss_pred CCc-CCCCCH--H---Hhhc-------ccCCcEEEecCCc-ccCCCcchHHHHHHHHhccccCC
Confidence 994 555521 1 2222 7999999999988 66666666555 66655544443
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=2.2e-31 Score=309.82 Aligned_cols=500 Identities=17% Similarity=0.110 Sum_probs=315.4
Q ss_pred CchhHHHHHHHhccCCCceeeecCCCcccCC-cc-cccccceeecccCcCcccChHHHccCCceeEEEccCccccccccc
Q 003090 220 PSITKIQYEIAGWLDLTGISLMFNDIHEVPD-EL-ECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVR 297 (848)
Q Consensus 220 ~~~~~l~~~i~~~~~l~~l~l~~n~l~~lp~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~ 297 (848)
.++..++..+.. .++.|++++|.++.+++ .+ ++++|++|++++|.+..+++..|.++++|++|++++
T Consensus 22 ~~l~~iP~~l~~--~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~--------- 90 (606)
T 3t6q_A 22 LGLNEIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTA--------- 90 (606)
T ss_dssp SCCSSCCTTSCT--TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTT---------
T ss_pred CCcccCcCCCCC--cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCC---------
Confidence 344555555544 46889999999998854 44 899999999999988888776688999999999999
Q ss_pred CCCCCCCCCCCCCCCCCchhhhcccCcEEEccCccccCC-chhhccccCCCEEEccCCCCcccC-hhhccCCcccEEecc
Q 003090 298 FPFLFPPLPSSPLFLLPSSLSFLINLRTLRLHDRRIQGD-LSLIGELSGLEILDLSESDVSEIP-VSFGRLSHLRLLDLT 375 (848)
Q Consensus 298 ~~~~~~~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~-~~~i~~l~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~ 375 (848)
+.+... .|..++.+++|++|++++|.+... +..++++++|++|++++|.+..++ ..+..+++|++|+++
T Consensus 91 -----n~l~~~----~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 161 (606)
T 3t6q_A 91 -----NPLIFM----AETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQ 161 (606)
T ss_dssp -----CCCSEE----CTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECC
T ss_pred -----Cccccc----ChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcc
Confidence 777774 577889999999999999987776 367889999999999999988652 234458999999999
Q ss_pred CCccccccChhhhhcccccc--EEeccccccccccccccccc--------------------------------------
Q 003090 376 GCYILELIPRGVLSRLRKLE--ELYMSHSFRHWQFESESEED-------------------------------------- 415 (848)
Q Consensus 376 ~~~~~~~~p~~~l~~l~~L~--~L~l~~~~~~~~~~~~~~~~-------------------------------------- 415 (848)
+|.... ++...++.+++|+ .|++++|.+....++.-...
T Consensus 162 ~n~l~~-~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~ 240 (606)
T 3t6q_A 162 NNAIHY-LSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDD 240 (606)
T ss_dssp SSCCCE-ECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCC
T ss_pred cCcccc-cChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccc
Confidence 986654 4444488899998 88888888766533210000
Q ss_pred -cCcccchhhhcccCCCcEEEeeccCCCCCCCCC--ccCCCCeEEEEeCCCCCCCCCcccceEEecccccccccccCccc
Q 003090 416 -SSSNAKFIELGALSRLTSLHIHIPEGKIMPSDM--SFQNLTSFSIAIGDLEERPLSDFIGLFLQKFKKRCSRAMGLSQD 492 (848)
Q Consensus 416 -~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~~~c~~~~~l~~~ 492 (848)
.-....+..+..+ +|+.|++++|.+..++... .+++|+.|++..+...
T Consensus 241 ~~i~~~~~~~l~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---------------------------- 291 (606)
T 3t6q_A 241 EDISPAVFEGLCEM-SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS---------------------------- 291 (606)
T ss_dssp CCCCGGGGGGGGGS-EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS----------------------------
T ss_pred cccChhHhchhhcC-ceeEEEeecCccCccCHHHhccccCCCEEeccCCccC----------------------------
Confidence 0000111111111 6778888888877777653 7788888887754431
Q ss_pred cchhhHHHHHHHHHhhcceeeeccccccccccccccccCCCCCcEEEEecCCCceeecccccccccccCCCccEEecccc
Q 003090 493 MRISALHSWIKNLLLRSEILALAEVNYFENIVSDLANDGFNELMFLVIFRCNEMKYLLNSLERTLRVTLHKLEWLFIREN 572 (848)
Q Consensus 493 ~~l~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~p~L~~L~l~~~ 572 (848)
.+|.++. .+++|++|+++++......+..+ ..+++|++|++.++.....++ ......+++|++|+++++
T Consensus 292 ----~lp~~l~-~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~~~~~~~----~~~~~~l~~L~~L~l~~n 360 (606)
T 3t6q_A 292 ----ELPSGLV-GLSTLKKLVLSANKFENLCQISA--SNFPSLTHLSIKGNTKRLELG----TGCLENLENLRELDLSHD 360 (606)
T ss_dssp ----CCCSSCC-SCTTCCEEECTTCCCSBGGGGCG--GGCTTCSEEECCSCSSCCBCC----SSTTTTCTTCCEEECCSS
T ss_pred ----CCChhhc-ccccCCEEECccCCcCcCchhhh--hccCcCCEEECCCCCcccccc----hhhhhccCcCCEEECCCC
Confidence 0110000 03567777777665443323222 456777777777775432221 112445677777777776
Q ss_pred cccccccccccccccCCCcceEEEecCchhhHhhhHHHHHhhccCcEEEEeccCCceeeeeccccccccccccccCCcCE
Q 003090 573 QNFVEICHGQLPAGCLSNVKRSDVVDCGSILKILLSHLVQSFQNLQRLRVYSCGLLVSVFEIERVNIAKEETELFSSLEK 652 (848)
Q Consensus 573 ~~L~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~ 652 (848)
. ++.+.......+.+++|++|++++|. + ..+++..+..+++|++|++++|.-....+. ..+..+++|++
T Consensus 361 ~-l~~~~~~~~~~~~l~~L~~L~l~~n~-l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--------~~~~~l~~L~~ 429 (606)
T 3t6q_A 361 D-IETSDCCNLQLRNLSHLQSLNLSYNE-P-LSLKTEAFKECPQLELLDLAFTRLKVKDAQ--------SPFQNLHLLKV 429 (606)
T ss_dssp C-CCEEEESTTTTTTCTTCCEEECCSCS-C-EEECTTTTTTCTTCSEEECTTCCEECCTTC--------CTTTTCTTCCE
T ss_pred c-cccccCcchhcccCCCCCEEECCCCc-C-CcCCHHHhcCCccCCeEECCCCcCCCcccc--------hhhhCcccCCE
Confidence 3 33321111223457777777777764 3 233332335677777777777643222211 23556777777
Q ss_pred EecCCCccccccccCCCccccccCccEEEeecCccccccccC--ccccccccceeeeccccccceeeeecC---CCCCCC
Q 003090 653 LTLWDLPRMTDIWKGDTQFVSLHNLKKVRVEECDELRQVFPA--NFGKKAAAEEMVLYRKRRDQIHIHATT---STSSPT 727 (848)
Q Consensus 653 L~l~~c~~L~~l~~~~~~l~~l~~L~~L~i~~C~~L~~~~p~--~~~~~~~~~~l~l~~l~~~~l~i~~c~---~~~~~~ 727 (848)
|++++|. +...... .+..+++|++|++++|.--...+|. .+.. +++| +.+++++|. ..+..+
T Consensus 430 L~l~~n~-l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~--------l~~L--~~L~Ls~n~l~~~~~~~~ 496 (606)
T 3t6q_A 430 LNLSHSL-LDISSEQ--LFDGLPALQHLNLQGNHFPKGNIQKTNSLQT--------LGRL--EILVLSFCDLSSIDQHAF 496 (606)
T ss_dssp EECTTCC-CBTTCTT--TTTTCTTCCEEECTTCBCGGGEECSSCGGGG--------CTTC--CEEECTTSCCCEECTTTT
T ss_pred EECCCCc-cCCcCHH--HHhCCCCCCEEECCCCCCCccccccchhhcc--------CCCc--cEEECCCCccCccChhhh
Confidence 7777764 3322221 2456777777777776522211111 1111 2333 444444441 124567
Q ss_pred CCCCCccEEEEecCCCCceecccchhhccccccEEEEecccccceeecCCcccccccCCCccceeccccccccccccccc
Q 003090 728 PSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVRSCPTLQEIIMDDEGEVGLQGASTKKITFPSLFGIKLCDLDSL 807 (848)
Q Consensus 728 ~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~~l~~~~~~~~~~~sL~~L~i~~cp~L 807 (848)
..+++|+.|++++| +++..++ ..+.++++| +|++++|. +..++. . .+. .+++|+.|+++++| +
T Consensus 497 ~~l~~L~~L~Ls~N-~l~~~~~-~~l~~l~~L-~L~L~~N~-l~~~~~--~---~~~-------~l~~L~~L~l~~N~-~ 559 (606)
T 3t6q_A 497 TSLKMMNHVDLSHN-RLTSSSI-EALSHLKGI-YLNLASNH-ISIILP--S---LLP-------ILSQQRTINLRQNP-L 559 (606)
T ss_dssp TTCTTCCEEECCSS-CCCGGGG-GGGTTCCSC-EEECCSSC-CCCCCG--G---GHH-------HHHTSSEEECTTCC-E
T ss_pred ccccCCCEEECCCC-ccCcCCh-hHhCccccc-EEECcCCc-ccccCH--h---hcc-------cCCCCCEEeCCCCC-c
Confidence 78899999999996 5766644 567889999 99999985 333311 1 121 27899999999998 6
Q ss_pred ccccCCCccccccc
Q 003090 808 ACFCSTAHHFNFVF 821 (848)
Q Consensus 808 ~~~~~~~~~~~~~~ 821 (848)
...|.....+.|++
T Consensus 560 ~c~c~~~~~~~w~~ 573 (606)
T 3t6q_A 560 DCTCSNIYFLEWYK 573 (606)
T ss_dssp ECSGGGHHHHHHHH
T ss_pred cccCCcHHHHHHHH
Confidence 66665444444544
No 7
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.97 E-value=4.2e-30 Score=303.25 Aligned_cols=147 Identities=22% Similarity=0.242 Sum_probs=65.3
Q ss_pred eeeecCCCcccCCcccccccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCCCCchh
Q 003090 238 ISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLPSSL 317 (848)
Q Consensus 238 l~l~~n~l~~lp~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp~~~ 317 (848)
++.+++.++.+|..+. +++++|++++|.+..++...|.++++|++|++++ +.+... .|..+
T Consensus 9 ~~cs~~~L~~ip~~~~-~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~--------------n~l~~~----~~~~~ 69 (680)
T 1ziw_A 9 ADCSHLKLTQVPDDLP-TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGF--------------NTISKL----EPELC 69 (680)
T ss_dssp EECCSSCCSSCCSCSC-TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCS--------------SCCCCC----CTTHH
T ss_pred eECCCCCccccccccC-CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCC--------------CccCcc----CHHHH
Confidence 3444444444444332 3444444444444444444344444444444444 344432 33444
Q ss_pred hhcccCcEEEccCccccCCch-hhccccCCCEEEccCCCCcccC-hhhccCCcccEEeccCCccccccChhhhhcccccc
Q 003090 318 SFLINLRTLRLHDRRIQGDLS-LIGELSGLEILDLSESDVSEIP-VSFGRLSHLRLLDLTGCYILELIPRGVLSRLRKLE 395 (848)
Q Consensus 318 ~~l~~L~~L~L~~~~~~~~~~-~i~~l~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~~~~p~~~l~~l~~L~ 395 (848)
+++++|++|++++|.+...++ .++++++|++|++++|.+..+| ..++++++|++|++++|...+..|.. ++++++|+
T Consensus 70 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~ 148 (680)
T 1ziw_A 70 QKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGT-QVQLENLQ 148 (680)
T ss_dssp HHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCS-SSCCTTCC
T ss_pred hcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchh-hcccccCC
Confidence 444444444444444443332 3444444444444444444333 23444444444444444433332322 34444444
Q ss_pred EEecccccc
Q 003090 396 ELYMSHSFR 404 (848)
Q Consensus 396 ~L~l~~~~~ 404 (848)
+|++++|.+
T Consensus 149 ~L~L~~n~l 157 (680)
T 1ziw_A 149 ELLLSNNKI 157 (680)
T ss_dssp EEECCSSCC
T ss_pred EEEccCCcc
Confidence 444444443
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=3.4e-30 Score=299.79 Aligned_cols=192 Identities=17% Similarity=0.125 Sum_probs=162.6
Q ss_pred CceeeecCCCcccCCcccccccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCCCCc
Q 003090 236 TGISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLPS 315 (848)
Q Consensus 236 ~~l~l~~n~l~~lp~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp~ 315 (848)
..++.++..+..+|..+. +.+++|++++|.+..+++..|.++++|++|++++ +.+... .|.
T Consensus 15 ~~~~c~~~~l~~iP~~l~-~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~--------------n~i~~~----~~~ 75 (606)
T 3t6q_A 15 KTYNCENLGLNEIPGTLP-NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTR--------------CQIYWI----HED 75 (606)
T ss_dssp TEEECTTSCCSSCCTTSC-TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTT--------------CCCCEE----CTT
T ss_pred ceEECCCCCcccCcCCCC-CcCcEEEccCCccCcCChhHhccCccceEEECCC--------------Ccccee----Chh
Confidence 356777888999998774 4799999999999999777789999999999999 788774 688
Q ss_pred hhhhcccCcEEEccCccccCCc-hhhccccCCCEEEccCCCCccc-ChhhccCCcccEEeccCCcccc-ccChhhhhccc
Q 003090 316 SLSFLINLRTLRLHDRRIQGDL-SLIGELSGLEILDLSESDVSEI-PVSFGRLSHLRLLDLTGCYILE-LIPRGVLSRLR 392 (848)
Q Consensus 316 ~~~~l~~L~~L~L~~~~~~~~~-~~i~~l~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~-~~p~~~l~~l~ 392 (848)
.|+++++|++|++++|.+...+ ..++++++|++|++++|.++.+ |..++++++|++|++++|...+ ..|. +..++
T Consensus 76 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~ 153 (606)
T 3t6q_A 76 TFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPK--GFPTE 153 (606)
T ss_dssp TTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCT--TCCCT
T ss_pred hccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCccc--ccCCc
Confidence 8999999999999999887764 7899999999999999999977 5679999999999999987765 2344 55699
Q ss_pred cccEEeccccccccccccccccccCcccchhhhcccCCCc--EEEeeccCCCCCCCCC-ccCCCCeEEEEeC
Q 003090 393 KLEELYMSHSFRHWQFESESEEDSSSNAKFIELGALSRLT--SLHIHIPEGKIMPSDM-SFQNLTSFSIAIG 461 (848)
Q Consensus 393 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~--~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~ 461 (848)
+|++|++++|.+... .+..++.+++|+ .|++++|.+..++... ...+|+.|++..+
T Consensus 154 ~L~~L~L~~n~l~~~-------------~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~ 212 (606)
T 3t6q_A 154 KLKVLDFQNNAIHYL-------------SKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGT 212 (606)
T ss_dssp TCCEEECCSSCCCEE-------------CHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTC
T ss_pred ccCEEEcccCccccc-------------ChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCc
Confidence 999999999988765 567788899999 8999999988776655 6667888877644
No 9
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.97 E-value=3.1e-29 Score=295.77 Aligned_cols=524 Identities=17% Similarity=0.152 Sum_probs=255.0
Q ss_pred CCCceeeecCCCcccCCc-c-cccccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCC
Q 003090 234 DLTGISLMFNDIHEVPDE-L-ECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLF 311 (848)
Q Consensus 234 ~l~~l~l~~n~l~~lp~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~ 311 (848)
.++.|++++|.+..+|.. + .+++|++|++++|.+..+++..|.++++|++|++++ +.+..
T Consensus 26 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~--------------n~l~~---- 87 (680)
T 1ziw_A 26 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH--------------NELSQ---- 87 (680)
T ss_dssp TCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCS--------------SCCCC----
T ss_pred CCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCC--------------CccCc----
Confidence 466777777777776654 3 677777777777777666666667777777777777 66665
Q ss_pred CCCc-hhhhcccCcEEEccCccccCCc-hhhccccCCCEEEccCCCCccc-ChhhccCCcccEEeccCCccccccChhhh
Q 003090 312 LLPS-SLSFLINLRTLRLHDRRIQGDL-SLIGELSGLEILDLSESDVSEI-PVSFGRLSHLRLLDLTGCYILELIPRGVL 388 (848)
Q Consensus 312 ~lp~-~~~~l~~L~~L~L~~~~~~~~~-~~i~~l~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~~p~~~l 388 (848)
+|. .++++++|++|++++|.+...+ ..++++++|++|++++|.++.. |..++++++|++|++++|...+ ++...+
T Consensus 88 -l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~ 165 (680)
T 1ziw_A 88 -LSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQA-LKSEEL 165 (680)
T ss_dssp -CCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCC-BCHHHH
T ss_pred -cChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccc-cCHHHh
Confidence 554 4677777777777777665555 4567777777777777766633 4456667777777777765443 333223
Q ss_pred h--ccccccEEeccccccccccccc----ccc----------------------------------ccCcccchhhhccc
Q 003090 389 S--RLRKLEELYMSHSFRHWQFESE----SEE----------------------------------DSSSNAKFIELGAL 428 (848)
Q Consensus 389 ~--~l~~L~~L~l~~~~~~~~~~~~----~~~----------------------------------~~~~~~~~~~L~~l 428 (848)
. .+++|++|++++|.+....+.. ... ..-....+..+..+
T Consensus 166 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l 245 (680)
T 1ziw_A 166 DIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGL 245 (680)
T ss_dssp GGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGG
T ss_pred hccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhcc
Confidence 3 3466777777766554432210 000 00000112233333
Q ss_pred C--CCcEEEeeccCCCCCCCC-C-ccCCCCeEEEEeCCC------CCCCCCcccceEEeccc-ccccccccCccccchhh
Q 003090 429 S--RLTSLHIHIPEGKIMPSD-M-SFQNLTSFSIAIGDL------EERPLSDFIGLFLQKFK-KRCSRAMGLSQDMRISA 497 (848)
Q Consensus 429 ~--~L~~L~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~------~~~~~~~l~~l~l~~~~-~~c~~~~~l~~~~~l~~ 497 (848)
+ +|+.|++++|.+..++.. + .+++|+.|++..+.. +....+.++.+.+.... .....+..+ ..
T Consensus 246 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~l------p~ 319 (680)
T 1ziw_A 246 KWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASL------PK 319 (680)
T ss_dssp GGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------C------CE
T ss_pred CcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccc------cc
Confidence 2 366666666665544332 2 556666666654433 22233344444443210 000000000 00
Q ss_pred HHHHHHHHHhhcceeeeccccccccccccccccCCCCCcEEEEecCCC-ceeecccccccccccCCCccEEecccccccc
Q 003090 498 LHSWIKNLLLRSEILALAEVNYFENIVSDLANDGFNELMFLVIFRCNE-MKYLLNSLERTLRVTLHKLEWLFIRENQNFV 576 (848)
Q Consensus 498 l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~-l~~l~~~~~~~~~~~~p~L~~L~l~~~~~L~ 576 (848)
++......+++|++|+++++.........+ ..+++|++|++.+|.. ...++.. .+ .....++|+.|+++++. +.
T Consensus 320 i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~Ls~n~~~~~~l~~~-~f-~~~~~~~L~~L~L~~n~-l~ 394 (680)
T 1ziw_A 320 IDDFSFQWLKCLEHLNMEDNDIPGIKSNMF--TGLINLKYLSLSNSFTSLRTLTNE-TF-VSLAHSPLHILNLTKNK-IS 394 (680)
T ss_dssp ECTTTTTTCTTCCEEECCSCCBCCCCTTTT--TTCTTCCEEECTTCBSCCCEECTT-TT-GGGTTSCCCEEECTTSC-CC
T ss_pred cChhhcccCCCCCEEECCCCccCCCChhHh--ccccCCcEEECCCCchhhhhcchh-hh-cccccCcCceEECCCCC-CC
Confidence 000001114667777777665443222222 3567777777776641 2221100 00 00112456666666653 33
Q ss_pred cccccccccccCCCcceEEEecCchhhHhhhHHHHHhhccCcEEEEeccCCceeeeecc------------------ccc
Q 003090 577 EICHGQLPAGCLSNVKRSDVVDCGSILKILLSHLVQSFQNLQRLRVYSCGLLVSVFEIE------------------RVN 638 (848)
Q Consensus 577 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~~~------------------~~~ 638 (848)
.+.. .....+++|+.|++++|.-. ..+|...+..+++|++|++++|. +..++... ...
T Consensus 395 ~~~~--~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 470 (680)
T 1ziw_A 395 KIES--DAFSWLGHLEVLDLGLNEIG-QELTGQEWRGLENIFEIYLSYNK-YLQLTRNSFALVPSLQRLMLRRVALKNVD 470 (680)
T ss_dssp EECT--TTTTTCTTCCEEECCSSCCE-EECCSGGGTTCTTCCEEECCSCS-EEECCTTTTTTCTTCCEEECTTSCCBCTT
T ss_pred eECh--hhhhCCCCCCEEeCCCCcCc-cccCcccccCcccccEEecCCCC-cceeChhhhhcCcccccchhccccccccc
Confidence 3211 11224666666666665433 33443333556666666666654 22221100 000
Q ss_pred cccccccccCCcCEEecCCCccccccccCCCccccccCccEEEeecCccccccccCccccccccceeeeccccccceeee
Q 003090 639 IAKEETELFSSLEKLTLWDLPRMTDIWKGDTQFVSLHNLKKVRVEECDELRQVFPANFGKKAAAEEMVLYRKRRDQIHIH 718 (848)
Q Consensus 639 ~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~l~~l~~L~~L~i~~C~~L~~~~p~~~~~~~~~~~l~l~~l~~~~l~i~ 718 (848)
.....+..+++|++|+++++. ++.++... +..+++|+.|+++++. ++.+.+..........--.+.+| +.+++.
T Consensus 471 ~~p~~~~~l~~L~~L~Ls~N~-l~~i~~~~--~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~l~~L--~~L~L~ 544 (680)
T 1ziw_A 471 SSPSPFQPLRNLTILDLSNNN-IANINDDM--LEGLEKLEILDLQHNN-LARLWKHANPGGPIYFLKGLSHL--HILNLE 544 (680)
T ss_dssp CSSCTTTTCTTCCEEECCSSC-CCCCCTTT--TTTCTTCCEEECCSSC-CGGGGSTTSTTSCCCTTTTCTTC--CEEECC
T ss_pred cCCcccccCCCCCEEECCCCC-CCcCChhh--hccccccCEEeCCCCC-ccccchhhccCCcchhhcCCCCC--CEEECC
Confidence 001233444555555555432 33333221 3445555555555542 22221100000000000001223 333333
Q ss_pred ec--CCCCC-CCCCCCCccEEEEecCCCCceecccchhhccccccEEEEecccccceeecCCcccccccCCCccceeccc
Q 003090 719 AT--TSTSS-PTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVRSCPTLQEIIMDDEGEVGLQGASTKKITFPS 795 (848)
Q Consensus 719 ~c--~~~~~-~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~~l~~~~~~~~~~~s 795 (848)
++ ...+. .+..+++|+.|++++ ++++.+|+ ..+.++++|++|+++++ .+..+... .+. ..+++
T Consensus 545 ~N~l~~i~~~~~~~l~~L~~L~Ls~-N~l~~l~~-~~~~~l~~L~~L~L~~N-~l~~~~~~-----~~~------~~~~~ 610 (680)
T 1ziw_A 545 SNGFDEIPVEVFKDLFELKIIDLGL-NNLNTLPA-SVFNNQVSLKSLNLQKN-LITSVEKK-----VFG------PAFRN 610 (680)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCT-TTTTTCTTCCEEECTTS-CCCBCCHH-----HHH------HHHTT
T ss_pred CCCCCCCCHHHcccccCcceeECCC-CCCCcCCH-hHhCCCCCCCEEECCCC-cCCccChh-----Hhc------ccccc
Confidence 33 12222 345666777777765 45666644 34566677777777776 34443110 000 02688
Q ss_pred ccccccccccccccccCC
Q 003090 796 LFGIKLCDLDSLACFCST 813 (848)
Q Consensus 796 L~~L~i~~cp~L~~~~~~ 813 (848)
|+.|++.++| +...|..
T Consensus 611 L~~l~l~~N~-~~c~c~~ 627 (680)
T 1ziw_A 611 LTELDMRFNP-FDCTCES 627 (680)
T ss_dssp CSEEECTTCC-CCBCCCC
T ss_pred cCEEEccCCC-cccCCcc
Confidence 9999998877 5555553
No 10
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=2.7e-30 Score=296.96 Aligned_cols=478 Identities=15% Similarity=0.131 Sum_probs=268.5
Q ss_pred eecCCCcccCCcccccccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCCCCchhhh
Q 003090 240 LMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLPSSLSF 319 (848)
Q Consensus 240 l~~n~l~~lp~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp~~~~~ 319 (848)
.+++.++.+|..+. ++|++|++++|.+..+++..|.++++|++|++++ +.+... .|..++.
T Consensus 12 ~~~~~l~~ip~~~~-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~--------------n~i~~~----~~~~~~~ 72 (549)
T 2z81_A 12 GRSRSFTSIPSGLT-AAMKSLDLSFNKITYIGHGDLRACANLQVLILKS--------------SRINTI----EGDAFYS 72 (549)
T ss_dssp CTTSCCSSCCSCCC-TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTT--------------SCCCEE----CTTTTTT
T ss_pred CCCCccccccccCC-CCccEEECcCCccCccChhhhhcCCcccEEECCC--------------CCcCcc----Chhhccc
Confidence 34455555555443 4555555555555555443345555555555555 444442 3344555
Q ss_pred cccCcEEEccCccccCCch-hhccccCCCEEEccCCCCcc--cChhhccCCcccEEeccCCccccccChhhhhccccccE
Q 003090 320 LINLRTLRLHDRRIQGDLS-LIGELSGLEILDLSESDVSE--IPVSFGRLSHLRLLDLTGCYILELIPRGVLSRLRKLEE 396 (848)
Q Consensus 320 l~~L~~L~L~~~~~~~~~~-~i~~l~~L~~L~l~~~~l~~--lp~~i~~L~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~ 396 (848)
+++|++|++++|.+...++ .++++++|++|++++|.++. .|..++++++|++|++++|...+.+|...+.++++|++
T Consensus 73 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~ 152 (549)
T 2z81_A 73 LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNE 152 (549)
T ss_dssp CTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEE
T ss_pred cccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCe
Confidence 5555555555555555442 35555555555555555552 34455555555555555555444454333555555555
Q ss_pred EeccccccccccccccccccCcccchhhhcccCCCcEEEeeccCCCCCCCCC--ccCCCCeEEEEeCCCCC---------
Q 003090 397 LYMSHSFRHWQFESESEEDSSSNAKFIELGALSRLTSLHIHIPEGKIMPSDM--SFQNLTSFSIAIGDLEE--------- 465 (848)
Q Consensus 397 L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~--------- 465 (848)
|++++|.+... .+..++.+++|++|+++++....++... .+++|+.|++..+....
T Consensus 153 L~L~~n~l~~~-------------~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 219 (549)
T 2z81_A 153 LEIKALSLRNY-------------QSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVD 219 (549)
T ss_dssp EEEEETTCCEE-------------CTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSC
T ss_pred eeccCCccccc-------------ChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchh
Confidence 55555555443 3344555555555555555544443332 34555555555433211
Q ss_pred CCCCcccceEEecccccccccccCccccchhhHHHHHH---HHHhhcceeeecccccccc--ccc--cccccCCCCCcEE
Q 003090 466 RPLSDFIGLFLQKFKKRCSRAMGLSQDMRISALHSWIK---NLLLRSEILALAEVNYFEN--IVS--DLANDGFNELMFL 538 (848)
Q Consensus 466 ~~~~~l~~l~l~~~~~~c~~~~~l~~~~~l~~l~~~~~---~~~~~L~~L~l~~~~~~~~--~~~--~l~~~~l~~L~~L 538 (848)
.....++.+.+.+.. + -...+..+. ..+++|+.+.+.+|..... +.. .-....+++|+.|
T Consensus 220 ~~~~~L~~L~l~~n~-----l--------~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L 286 (549)
T 2z81_A 220 EVSSPMKKLAFRGSV-----L--------TDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETV 286 (549)
T ss_dssp CCCCCCCEEEEESCE-----E--------EHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEE
T ss_pred hhhhcccceeccccc-----c--------chhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccc
Confidence 012223333333221 0 011111111 1246788888887764321 100 0012457888999
Q ss_pred EEecCCCceeeccccccc-ccccCCCccEEecccccccccccccccccccCCCcceEEEecCchhhHhhhHHH--HHhhc
Q 003090 539 VIFRCNEMKYLLNSLERT-LRVTLHKLEWLFIRENQNFVEICHGQLPAGCLSNVKRSDVVDCGSILKILLSHL--VQSFQ 615 (848)
Q Consensus 539 ~l~~~~~l~~l~~~~~~~-~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~l~~~~--~~~l~ 615 (848)
.+.++..-... ...... ....+++|++|+++++. ++.+.... ...+++|+.|++++|.-. ..+|... ...++
T Consensus 287 ~l~~~~i~~~~-~~~~l~~~~~~~~~L~~L~l~~n~-l~~ip~~~--~~~l~~L~~L~Ls~N~l~-~~~~~~~~~~~~l~ 361 (549)
T 2z81_A 287 TIRRLHIPQFY-LFYDLSTVYSLLEKVKRITVENSK-VFLVPCSF--SQHLKSLEFLDLSENLMV-EEYLKNSACKGAWP 361 (549)
T ss_dssp EEESCBCSCGG-GSCCCCHHHHHSTTCCEEEEESSC-CCCCCHHH--HHHCTTCCEEECCSSCCC-HHHHHHHTCTTSST
T ss_pred cccccccchhh-hcccchhhhhhcccceEEEeccCc-cccCCHHH--HhcCccccEEEccCCccc-cccccchhhhhccc
Confidence 98877432110 000000 12345789999999874 54331110 124889999999998655 5554321 25678
Q ss_pred cCcEEEEeccCCceeeeeccccccccccccccCCcCEEecCCCccccccccCCCccccccCccEEEeecCccccccccCc
Q 003090 616 NLQRLRVYSCGLLVSVFEIERVNIAKEETELFSSLEKLTLWDLPRMTDIWKGDTQFVSLHNLKKVRVEECDELRQVFPAN 695 (848)
Q Consensus 616 ~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~l~~l~~L~~L~i~~C~~L~~~~p~~ 695 (848)
+|++|++++|. ++.++.. ...+..+++|++|++++| +++.+|.. +..+++|+.|++++|. ++.+ |..
T Consensus 362 ~L~~L~Ls~N~-l~~~~~~------~~~~~~l~~L~~L~Ls~N-~l~~lp~~---~~~~~~L~~L~Ls~N~-l~~l-~~~ 428 (549)
T 2z81_A 362 SLQTLVLSQNH-LRSMQKT------GEILLTLKNLTSLDISRN-TFHPMPDS---CQWPEKMRFLNLSSTG-IRVV-KTC 428 (549)
T ss_dssp TCCEEECTTSC-CCCHHHH------HHHGGGCTTCCEEECTTC-CCCCCCSC---CCCCTTCCEEECTTSC-CSCC-CTT
T ss_pred cCcEEEccCCc-ccccccc------hhhhhcCCCCCEEECCCC-CCccCChh---hcccccccEEECCCCC-cccc-cch
Confidence 99999999874 4433210 023668899999999997 57777654 5678999999999985 5442 322
Q ss_pred cccccccceeeeccccccceeeeecCCCCCCCCCCCCccEEEEecCCCCceecccchhhccccccEEEEecccccceeec
Q 003090 696 FGKKAAAEEMVLYRKRRDQIHIHATTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVRSCPTLQEIIM 775 (848)
Q Consensus 696 ~~~~~~~~~l~l~~l~~~~l~i~~c~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~L~~l~~ 775 (848)
.. .++ +.+++.+| .+......+++|++|++++| +++.+|. ...+++|++|++++|. ++.++.
T Consensus 429 ~~----------~~L--~~L~Ls~N-~l~~~~~~l~~L~~L~Ls~N-~l~~ip~---~~~l~~L~~L~Ls~N~-l~~~~~ 490 (549)
T 2z81_A 429 IP----------QTL--EVLDVSNN-NLDSFSLFLPRLQELYISRN-KLKTLPD---ASLFPVLLVMKISRNQ-LKSVPD 490 (549)
T ss_dssp SC----------TTC--SEEECCSS-CCSCCCCCCTTCCEEECCSS-CCSSCCC---GGGCTTCCEEECCSSC-CCCCCT
T ss_pred hc----------CCc--eEEECCCC-ChhhhcccCChhcEEECCCC-ccCcCCC---cccCccCCEEecCCCc-cCCcCH
Confidence 21 233 55666665 23333468899999999996 7888864 3578999999999984 555421
Q ss_pred CCcccccccCCCccceeccccccccccccccccccc
Q 003090 776 DDEGEVGLQGASTKKITFPSLFGIKLCDLDSLACFC 811 (848)
Q Consensus 776 ~~~~~~~l~~~~~~~~~~~sL~~L~i~~cp~L~~~~ 811 (848)
. .+.. +++|+.|++.++| +...|
T Consensus 491 --~---~~~~-------l~~L~~L~l~~N~-~~~~~ 513 (549)
T 2z81_A 491 --G---IFDR-------LTSLQKIWLHTNP-WDCSC 513 (549)
T ss_dssp --T---GGGG-------CTTCCEEECCSSC-BCCCH
T ss_pred --H---HHhc-------CcccCEEEecCCC-ccCCC
Confidence 1 1222 7899999999988 44433
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=1.4e-30 Score=300.93 Aligned_cols=171 Identities=23% Similarity=0.287 Sum_probs=138.3
Q ss_pred EEEEEeccCCchhHHHH-HHHhccCCCceeeecCCCcccCCcc--cccccceeecccCcCcccChHHHccCCceeEEEcc
Q 003090 211 VAMAVVSQTPSITKIQY-EIAGWLDLTGISLMFNDIHEVPDEL--ECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLG 287 (848)
Q Consensus 211 ~~wv~vs~~~~~~~l~~-~i~~~~~l~~l~l~~n~l~~lp~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~ 287 (848)
...+.++.. .+..+.. .+.....++.|++++|.+..++... .+++|++|++++|.+..+++..|.++++|++|+++
T Consensus 30 l~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 108 (570)
T 2z63_A 30 TKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (570)
T ss_dssp CCEEECCSC-CCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred ccEEEccCC-ccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccc
Confidence 344556553 3444432 4555667999999999999887653 89999999999999999987778999999999999
Q ss_pred CcccccccccCCCCCCCCCCCCCCCCCc-hhhhcccCcEEEccCccccC--CchhhccccCCCEEEccCCCCcccC-hhh
Q 003090 288 GIRRFSFSVRFPFLFPPLPSSPLFLLPS-SLSFLINLRTLRLHDRRIQG--DLSLIGELSGLEILDLSESDVSEIP-VSF 363 (848)
Q Consensus 288 ~~~~~~~~~~~~~~~~~l~~~~~~~lp~-~~~~l~~L~~L~L~~~~~~~--~~~~i~~l~~L~~L~l~~~~l~~lp-~~i 363 (848)
+ +.+.. +|. .++.+++|++|++++|.+.. .+..++++++|++|++++|.++.++ ..+
T Consensus 109 ~--------------n~l~~-----l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~ 169 (570)
T 2z63_A 109 E--------------TNLAS-----LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169 (570)
T ss_dssp T--------------SCCCC-----STTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGG
T ss_pred c--------------ccccc-----CCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHc
Confidence 9 88887 554 68999999999999998876 3688999999999999999999664 568
Q ss_pred ccCCcc----cEEeccCCccccccChhhhhccccccEEeccccc
Q 003090 364 GRLSHL----RLLDLTGCYILELIPRGVLSRLRKLEELYMSHSF 403 (848)
Q Consensus 364 ~~L~~L----~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~ 403 (848)
+.+.+| ++|++++|.... ++.+.+..+ +|+.|++++|.
T Consensus 170 ~~l~~L~~~~~~L~l~~n~l~~-~~~~~~~~~-~L~~L~l~~n~ 211 (570)
T 2z63_A 170 RVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEI-RLHKLTLRNNF 211 (570)
T ss_dssp HHHHTCTTCCCEEECTTCCCCE-ECTTTTTTC-EEEEEEEESCC
T ss_pred cchhccchhhhhcccCCCCcee-cCHHHhccC-cceeEeccccc
Confidence 888888 899999987655 444435544 89999998874
No 12
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=3.4e-29 Score=287.83 Aligned_cols=467 Identities=17% Similarity=0.193 Sum_probs=330.1
Q ss_pred CchhHHHHHHHhccCCCceeeecCCCcccCC-cc-cccccceeecccCcCcccChHHHccCCceeEEEccCccccccccc
Q 003090 220 PSITKIQYEIAGWLDLTGISLMFNDIHEVPD-EL-ECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVR 297 (848)
Q Consensus 220 ~~~~~l~~~i~~~~~l~~l~l~~n~l~~lp~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~ 297 (848)
..+..++..+. ..++.|++++|.+..+++ .+ .+++|++|++++|.+..+++..|.++++|++|++++
T Consensus 15 ~~l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~--------- 83 (549)
T 2z81_A 15 RSFTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSD--------- 83 (549)
T ss_dssp SCCSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT---------
T ss_pred CccccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCC---------
Confidence 34444444433 357999999999998864 44 899999999999999998877789999999999999
Q ss_pred CCCCCCCCCCCCCCCCCchhhhcccCcEEEccCccccCC--chhhccccCCCEEEccCCC-CcccC-hhhccCCcccEEe
Q 003090 298 FPFLFPPLPSSPLFLLPSSLSFLINLRTLRLHDRRIQGD--LSLIGELSGLEILDLSESD-VSEIP-VSFGRLSHLRLLD 373 (848)
Q Consensus 298 ~~~~~~~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~--~~~i~~l~~L~~L~l~~~~-l~~lp-~~i~~L~~L~~L~ 373 (848)
+.+.+. .|..++.+++|++|++++|.+... +..++++++|++|++++|. +..+| ..++++++|++|+
T Consensus 84 -----n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~ 154 (549)
T 2z81_A 84 -----NHLSSL----SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELE 154 (549)
T ss_dssp -----SCCCSC----CHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEE
T ss_pred -----CccCcc----CHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeee
Confidence 888883 344599999999999999988753 4789999999999999997 66777 5799999999999
Q ss_pred ccCCccccccChhhhhccccccEEeccccccccccccccccccCcccchhhhcccCCCcEEEeeccCCCCCC---CCC--
Q 003090 374 LTGCYILELIPRGVLSRLRKLEELYMSHSFRHWQFESESEEDSSSNAKFIELGALSRLTSLHIHIPEGKIMP---SDM-- 448 (848)
Q Consensus 374 l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~---~~~-- 448 (848)
+++|...+..|.. ++++++|++|++++|..... ....++.+++|+.|++++|.+...+ ..+
T Consensus 155 L~~n~l~~~~~~~-l~~l~~L~~L~l~~n~~~~~-------------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 220 (549)
T 2z81_A 155 IKALSLRNYQSQS-LKSIRDIHHLTLHLSESAFL-------------LEIFADILSSVRYLELRDTNLARFQFSPLPVDE 220 (549)
T ss_dssp EEETTCCEECTTT-TTTCSEEEEEEEECSBSTTH-------------HHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCC
T ss_pred ccCCcccccChhh-hhccccCceEecccCccccc-------------chhhHhhcccccEEEccCCccccccccccchhh
Confidence 9999888778877 89999999999998876432 1123456899999999999987653 222
Q ss_pred ccCCCCeEEEEeCCC----------CCCCCCcccceEEecccccccccccCccccchhhHHHHHHHHHhhcceeeecccc
Q 003090 449 SFQNLTSFSIAIGDL----------EERPLSDFIGLFLQKFKKRCSRAMGLSQDMRISALHSWIKNLLLRSEILALAEVN 518 (848)
Q Consensus 449 ~~~~L~~L~l~~~~~----------~~~~~~~l~~l~l~~~~~~c~~~~~l~~~~~l~~l~~~~~~~~~~L~~L~l~~~~ 518 (848)
.+++|+.|.+..+.. .......++.+.+.... -.....+... ... ....+++++.|.+.++.
T Consensus 221 ~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~--~~~~~~~~~~-~~~-----~~~~l~~L~~L~l~~~~ 292 (549)
T 2z81_A 221 VSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCT--LNGLGDFNPS-ESD-----VVSELGKVETVTIRRLH 292 (549)
T ss_dssp CCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCE--EECCSCCCCC-TTT-----CCCCCTTCCEEEEESCB
T ss_pred hhhcccceeccccccchhHHHHHHHHhhhhcccccccccccc--cccccccccc-chh-----hhhhhcccccccccccc
Confidence 578899999885543 11223445555554432 0000000000 000 00114678888887765
Q ss_pred cccccc-cccc--ccCCCCCcEEEEecCCCceeecccccccccccCCCccEEecccccccccccccccccccCCCcceEE
Q 003090 519 YFENIV-SDLA--NDGFNELMFLVIFRCNEMKYLLNSLERTLRVTLHKLEWLFIRENQNFVEICHGQLPAGCLSNVKRSD 595 (848)
Q Consensus 519 ~~~~~~-~~l~--~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~l~~L~~L~ 595 (848)
...... ..+. ...+++|+.|++.++. ++.++. .....+++|++|+++++.-...+.......+.+++|+.|+
T Consensus 293 i~~~~~~~~l~~~~~~~~~L~~L~l~~n~-l~~ip~----~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~ 367 (549)
T 2z81_A 293 IPQFYLFYDLSTVYSLLEKVKRITVENSK-VFLVPC----SFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLV 367 (549)
T ss_dssp CSCGGGSCCCCHHHHHSTTCCEEEEESSC-CCCCCH----HHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEE
T ss_pred cchhhhcccchhhhhhcccceEEEeccCc-cccCCH----HHHhcCccccEEEccCCccccccccchhhhhccccCcEEE
Confidence 322110 0000 1234789999999985 444321 1224689999999999953222111111235789999999
Q ss_pred EecCchhhHhhhH--HHHHhhccCcEEEEeccCCceeeeeccccccccccccccCCcCEEecCCCccccccccCCCcccc
Q 003090 596 VVDCGSILKILLS--HLVQSFQNLQRLRVYSCGLLVSVFEIERVNIAKEETELFSSLEKLTLWDLPRMTDIWKGDTQFVS 673 (848)
Q Consensus 596 l~~c~~l~~~l~~--~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~l~~ 673 (848)
+++|. + ..++. .....+++|++|++++| .++.+| ..+..+++|++|+++++. ++.++...
T Consensus 368 Ls~N~-l-~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp---------~~~~~~~~L~~L~Ls~N~-l~~l~~~~----- 429 (549)
T 2z81_A 368 LSQNH-L-RSMQKTGEILLTLKNLTSLDISRN-TFHPMP---------DSCQWPEKMRFLNLSSTG-IRVVKTCI----- 429 (549)
T ss_dssp CTTSC-C-CCHHHHHHHGGGCTTCCEEECTTC-CCCCCC---------SCCCCCTTCCEEECTTSC-CSCCCTTS-----
T ss_pred ccCCc-c-cccccchhhhhcCCCCCEEECCCC-CCccCC---------hhhcccccccEEECCCCC-cccccchh-----
Confidence 99974 5 55553 33578999999999998 556665 456788999999999975 66665432
Q ss_pred ccCccEEEeecCccccccccCccccccccceeeeccccccceeeeec--CCCCCCCCCCCCccEEEEecCCCCceecccc
Q 003090 674 LHNLKKVRVEECDELRQVFPANFGKKAAAEEMVLYRKRRDQIHIHAT--TSTSSPTPSLGNLVSITIRGCGKLRNLFTTS 751 (848)
Q Consensus 674 l~~L~~L~i~~C~~L~~~~p~~~~~~~~~~~l~l~~l~~~~l~i~~c--~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~ 751 (848)
.++|++|++++| +++.+ +.. +++| +.+++.+| ..+|. ...+++|+.|++++| +++.+++ .
T Consensus 430 ~~~L~~L~Ls~N-~l~~~-~~~-----------l~~L--~~L~Ls~N~l~~ip~-~~~l~~L~~L~Ls~N-~l~~~~~-~ 491 (549)
T 2z81_A 430 PQTLEVLDVSNN-NLDSF-SLF-----------LPRL--QELYISRNKLKTLPD-ASLFPVLLVMKISRN-QLKSVPD-G 491 (549)
T ss_dssp CTTCSEEECCSS-CCSCC-CCC-----------CTTC--CEEECCSSCCSSCCC-GGGCTTCCEEECCSS-CCCCCCT-T
T ss_pred cCCceEEECCCC-Chhhh-ccc-----------CChh--cEEECCCCccCcCCC-cccCccCCEEecCCC-ccCCcCH-H
Confidence 379999999998 45553 211 3344 55555555 23343 357899999999995 7888865 5
Q ss_pred hhhccccccEEEEecccc
Q 003090 752 MVKSLVRLESLEVRSCPT 769 (848)
Q Consensus 752 ~~~~l~~L~~L~i~~C~~ 769 (848)
.+..+++|++|++++|+-
T Consensus 492 ~~~~l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 492 IFDRLTSLQKIWLHTNPW 509 (549)
T ss_dssp GGGGCTTCCEEECCSSCB
T ss_pred HHhcCcccCEEEecCCCc
Confidence 678999999999999974
No 13
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.96 E-value=1.8e-28 Score=294.81 Aligned_cols=154 Identities=27% Similarity=0.364 Sum_probs=90.1
Q ss_pred CCCceeeecCCCcccCC-cc-cccccceeecccC-cCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCC
Q 003090 234 DLTGISLMFNDIHEVPD-EL-ECPKLQALFLQEN-SPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPL 310 (848)
Q Consensus 234 ~l~~l~l~~n~l~~lp~-~~-~~~~L~~L~l~~~-~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~ 310 (848)
.++.|++++|.++.++. .+ .+++|++|++++| ....+++..|.++++|++|+|++ +.+...
T Consensus 25 ~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~--------------N~l~~~-- 88 (844)
T 3j0a_A 25 TTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS--------------SKIYFL-- 88 (844)
T ss_dssp TCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT--------------CCCCEE--
T ss_pred CcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC--------------CcCccc--
Confidence 35666666666665532 23 6666666666666 44455444456666666666666 555553
Q ss_pred CCCCchhhhcccCcEEEccCccccCC-ch--hhccccCCCEEEccCCCCccc--ChhhccCCcccEEeccCCccccccCh
Q 003090 311 FLLPSSLSFLINLRTLRLHDRRIQGD-LS--LIGELSGLEILDLSESDVSEI--PVSFGRLSHLRLLDLTGCYILELIPR 385 (848)
Q Consensus 311 ~~lp~~~~~l~~L~~L~L~~~~~~~~-~~--~i~~l~~L~~L~l~~~~l~~l--p~~i~~L~~L~~L~l~~~~~~~~~p~ 385 (848)
.|..++++++|++|++++|.+... +. .++++++|++|++++|.+..+ +..++++++|++|++++|.+....+.
T Consensus 89 --~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~ 166 (844)
T 3j0a_A 89 --HPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEH 166 (844)
T ss_dssp --CTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSG
T ss_pred --CHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHH
Confidence 356666666666666666655543 22 256666666666666666543 23566666666666666655554444
Q ss_pred hhhhcc--ccccEEecccccccc
Q 003090 386 GVLSRL--RKLEELYMSHSFRHW 406 (848)
Q Consensus 386 ~~l~~l--~~L~~L~l~~~~~~~ 406 (848)
. +..+ ++|+.|++++|.+..
T Consensus 167 ~-l~~l~~~~L~~L~L~~n~l~~ 188 (844)
T 3j0a_A 167 E-LEPLQGKTLSFFSLAANSLYS 188 (844)
T ss_dssp G-GHHHHHCSSCCCEECCSBSCC
T ss_pred H-cccccCCccceEECCCCcccc
Confidence 4 4555 566666666665544
No 14
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=4e-29 Score=294.40 Aligned_cols=285 Identities=15% Similarity=0.113 Sum_probs=141.3
Q ss_pred CCchhhhcccCcEEEccCccccC------------------Cchhhc--cccCCCEEEccCCCCc-ccChhhccCCcccE
Q 003090 313 LPSSLSFLINLRTLRLHDRRIQG------------------DLSLIG--ELSGLEILDLSESDVS-EIPVSFGRLSHLRL 371 (848)
Q Consensus 313 lp~~~~~l~~L~~L~L~~~~~~~------------------~~~~i~--~l~~L~~L~l~~~~l~-~lp~~i~~L~~L~~ 371 (848)
+|..++++++|++|+|++|.+.+ .|..++ ++++|++|++++|.+. .+|..++++++|++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 55556666666666666665555 444444 5666666666665543 55555666666666
Q ss_pred EeccCCc-ccc-ccChhhhhccc-------cccEEeccccccccccccccccccCcccchh--hhcccCCCcEEEeeccC
Q 003090 372 LDLTGCY-ILE-LIPRGVLSRLR-------KLEELYMSHSFRHWQFESESEEDSSSNAKFI--ELGALSRLTSLHIHIPE 440 (848)
Q Consensus 372 L~l~~~~-~~~-~~p~~~l~~l~-------~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~--~L~~l~~L~~L~l~~~~ 440 (848)
|++++|. +.+ .+|.. +++++ +|++|++++|.+. . .+. .++++++|+.|++++|.
T Consensus 520 L~Ls~N~~lsg~~iP~~-i~~L~~~~~~l~~L~~L~Ls~N~L~-~-------------ip~~~~l~~L~~L~~L~Ls~N~ 584 (876)
T 4ecn_A 520 LNIACNRGISAAQLKAD-WTRLADDEDTGPKIQIFYMGYNNLE-E-------------FPASASLQKMVKLGLLDCVHNK 584 (876)
T ss_dssp EECTTCTTSCHHHHHHH-HHHHHHCTTTTTTCCEEECCSSCCC-B-------------CCCHHHHTTCTTCCEEECTTSC
T ss_pred EECcCCCCcccccchHH-HHhhhhcccccCCccEEEeeCCcCC-c-------------cCChhhhhcCCCCCEEECCCCC
Confidence 6666654 333 45554 44444 5666666665554 2 333 45556666666666665
Q ss_pred CCCCCCCC-ccCCCCeEEEEeCCCCCCCCCcccceEEecccccccccccCccccchhhHHHHHHHHHhhcceeeeccccc
Q 003090 441 GKIMPSDM-SFQNLTSFSIAIGDLEERPLSDFIGLFLQKFKKRCSRAMGLSQDMRISALHSWIKNLLLRSEILALAEVNY 519 (848)
Q Consensus 441 ~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~~~c~~~~~l~~~~~l~~l~~~~~~~~~~L~~L~l~~~~~ 519 (848)
+..+| .+ .+++|+.| .++++..
T Consensus 585 l~~lp-~~~~L~~L~~L--------------------------------------------------------~Ls~N~l 607 (876)
T 4ecn_A 585 VRHLE-AFGTNVKLTDL--------------------------------------------------------KLDYNQI 607 (876)
T ss_dssp CCBCC-CCCTTSEESEE--------------------------------------------------------ECCSSCC
T ss_pred cccch-hhcCCCcceEE--------------------------------------------------------ECcCCcc
Confidence 55555 22 44444444 4444432
Q ss_pred cccccccccccCCCC-CcEEEEecCCCceeecccccccccccCCCccEEeccccccccccccc---ccccccCCCcceEE
Q 003090 520 FENIVSDLANDGFNE-LMFLVIFRCNEMKYLLNSLERTLRVTLHKLEWLFIRENQNFVEICHG---QLPAGCLSNVKRSD 595 (848)
Q Consensus 520 ~~~~~~~l~~~~l~~-L~~L~l~~~~~l~~l~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~---~~~~~~l~~L~~L~ 595 (848)
. .++..+ ..+++ |+.|+++++. ++.++. .......++|+.|+++++. +...... ....-.+++|+.|+
T Consensus 608 ~-~lp~~l--~~l~~~L~~L~Ls~N~-L~~lp~---~~~~~~~~~L~~L~Ls~N~-l~g~ip~l~~~l~~~~~~~L~~L~ 679 (876)
T 4ecn_A 608 E-EIPEDF--CAFTDQVEGLGFSHNK-LKYIPN---IFNAKSVYVMGSVDFSYNK-IGSEGRNISCSMDDYKGINASTVT 679 (876)
T ss_dssp S-CCCTTS--CEECTTCCEEECCSSC-CCSCCS---CCCTTCSSCEEEEECCSSC-TTTTSSSCSSCTTTCCCCCEEEEE
T ss_pred c-cchHHH--hhccccCCEEECcCCC-CCcCch---hhhccccCCCCEEECcCCc-CCCccccchhhhccccCCCcCEEE
Confidence 2 222222 34455 6666666654 223211 1111122346666666663 2111000 00001234666777
Q ss_pred EecCchhhHhhhHHHHHhhccCcEEEEeccCCceeeeeccccccccccccccCCcCEEecCCCccccccccCCCccc--c
Q 003090 596 VVDCGSILKILLSHLVQSFQNLQRLRVYSCGLLVSVFEIERVNIAKEETELFSSLEKLTLWDLPRMTDIWKGDTQFV--S 673 (848)
Q Consensus 596 l~~c~~l~~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~l~--~ 673 (848)
+++|. + ..+|......+++|+.|++++| .++.++... ..........+++|++|++++| +++.+|.. +. .
T Consensus 680 Ls~N~-L-~~lp~~~~~~l~~L~~L~Ls~N-~L~~ip~~~-~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~~---l~~~~ 751 (876)
T 4ecn_A 680 LSYNE-I-QKFPTELFATGSPISTIILSNN-LMTSIPENS-LKPKDGNYKNTYLLTTIDLRFN-KLTSLSDD---FRATT 751 (876)
T ss_dssp CCSSC-C-CSCCHHHHHTTCCCSEEECCSC-CCSCCCTTS-SSCTTSCCTTGGGCCEEECCSS-CCCCCCGG---GSTTT
T ss_pred ccCCc-C-CccCHHHHccCCCCCEEECCCC-cCCccChHH-hccccccccccCCccEEECCCC-CCccchHH---hhhcc
Confidence 66653 4 4566655556667777777665 333443210 0000000122346777777665 45555433 22 5
Q ss_pred ccCccEEEeecC
Q 003090 674 LHNLKKVRVEEC 685 (848)
Q Consensus 674 l~~L~~L~i~~C 685 (848)
+++|+.|++++|
T Consensus 752 l~~L~~L~Ls~N 763 (876)
T 4ecn_A 752 LPYLSNMDVSYN 763 (876)
T ss_dssp CTTCCEEECCSS
T ss_pred CCCcCEEEeCCC
Confidence 667777777665
No 15
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=6.4e-29 Score=288.53 Aligned_cols=401 Identities=11% Similarity=0.097 Sum_probs=248.9
Q ss_pred CcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCC-----CCC--------CCCchhh--hcccCcEEEcc
Q 003090 265 NSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSS-----PLF--------LLPSSLS--FLINLRTLRLH 329 (848)
Q Consensus 265 ~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~-----~~~--------~lp~~~~--~l~~L~~L~L~ 329 (848)
|.+..+|.. ++++++|++|++++ +.+.+. ... .+|..++ ++++|++|+++
T Consensus 193 n~l~~ip~~-l~~l~~L~~L~Ls~--------------n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~ 257 (636)
T 4eco_A 193 NNITFVSKA-VMRLTKLRQFYMGN--------------SPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVY 257 (636)
T ss_dssp CEEEEECGG-GGGCTTCCEEEEES--------------CCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEE
T ss_pred CCCccCCHH-HhcccCCCEEECcC--------------CccccccccccccccccchhcccCchhhhhcccCCCCEEEec
Confidence 344458876 68999999999999 556551 000 0678888 99999999999
Q ss_pred CccccCCc-hhhccccCCCEEEccCCC-Cc--ccChhhccC------CcccEEeccCCccccccCh--hhhhccccccEE
Q 003090 330 DRRIQGDL-SLIGELSGLEILDLSESD-VS--EIPVSFGRL------SHLRLLDLTGCYILELIPR--GVLSRLRKLEEL 397 (848)
Q Consensus 330 ~~~~~~~~-~~i~~l~~L~~L~l~~~~-l~--~lp~~i~~L------~~L~~L~l~~~~~~~~~p~--~~l~~l~~L~~L 397 (848)
+|.+.+.. ..++++++|++|++++|+ ++ .+|..++++ ++|++|++++|... .+|. . ++++++|++|
T Consensus 258 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~-l~~l~~L~~L 335 (636)
T 4eco_A 258 NCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETS-LQKMKKLGML 335 (636)
T ss_dssp CCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHH-HTTCTTCCEE
T ss_pred CCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhh-hccCCCCCEE
Confidence 99877754 789999999999999998 88 499999887 99999999998776 8998 6 8999999999
Q ss_pred eccccccccccccccccccCcccchhhhcccCCCcEEEeeccCCCCCCCCC-ccCC-CCeEEEEeCCCCCCCCCcccceE
Q 003090 398 YMSHSFRHWQFESESEEDSSSNAKFIELGALSRLTSLHIHIPEGKIMPSDM-SFQN-LTSFSIAIGDLEERPLSDFIGLF 475 (848)
Q Consensus 398 ~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~-~~~~-L~~L~l~~~~~~~~~~~~l~~l~ 475 (848)
++++|.+.+. .+ .++.+++|+.|++++|.+..+|..+ .+++ |+.|++..+...
T Consensus 336 ~L~~N~l~g~-------------ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~----------- 390 (636)
T 4eco_A 336 ECLYNQLEGK-------------LP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK----------- 390 (636)
T ss_dssp ECCSCCCEEE-------------CC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-----------
T ss_pred eCcCCcCccc-------------hh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-----------
Confidence 9999998754 44 7889999999999999988888877 7777 888887644331
Q ss_pred EecccccccccccCccccchhhHHHHHHHHHhhcceeeeccccccccccccccccCCCCCcEEEEecCCCceeeccccc-
Q 003090 476 LQKFKKRCSRAMGLSQDMRISALHSWIKNLLLRSEILALAEVNYFENIVSDLANDGFNELMFLVIFRCNEMKYLLNSLE- 554 (848)
Q Consensus 476 l~~~~~~c~~~~~l~~~~~l~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~l~~~~~- 554 (848)
.++..+....+++|+.|+++++.....++....
T Consensus 391 ----------------------------------------------~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 424 (636)
T 4eco_A 391 ----------------------------------------------YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDP 424 (636)
T ss_dssp ----------------------------------------------SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCT
T ss_pred ----------------------------------------------ccchhhhhcccCccCEEECcCCcCCCcchhhhcc
Confidence 111111111233444444444432211100000
Q ss_pred -ccccccCCCccEEecccccccccccccccccccCCCcceEEEecCchhhHhhhHHHHH-------hhccCcEEEEeccC
Q 003090 555 -RTLRVTLHKLEWLFIRENQNFVEICHGQLPAGCLSNVKRSDVVDCGSILKILLSHLVQ-------SFQNLQRLRVYSCG 626 (848)
Q Consensus 555 -~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~l~~~~~~-------~l~~L~~L~l~~c~ 626 (848)
......+++|++|+++++. ++.+.... ...+++|+.|++++|. + ..+|..... .+++|++|++++|.
T Consensus 425 ~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~--~~~l~~L~~L~Ls~N~-l-~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~ 499 (636)
T 4eco_A 425 LDPTPFKGINVSSINLSNNQ-ISKFPKEL--FSTGSPLSSINLMGNM-L-TEIPKNSLKDENENFKNTYLLTSIDLRFNK 499 (636)
T ss_dssp TCSSCCCCCCEEEEECCSSC-CCSCCTHH--HHTTCCCSEEECCSSC-C-SBCCSSSSEETTEECTTGGGCCEEECCSSC
T ss_pred cccccccCCCCCEEECcCCc-cCcCCHHH--HccCCCCCEEECCCCC-C-CCcCHHHhccccccccccCCccEEECcCCc
Confidence 0000023455555555542 22210000 0124555555555542 3 344432211 22377777777764
Q ss_pred Cceeeeecccccccccccc--ccCCcCEEecCCCccccccccCCCccccccCccEEEeecCccccccccCccccccccce
Q 003090 627 LLVSVFEIERVNIAKEETE--LFSSLEKLTLWDLPRMTDIWKGDTQFVSLHNLKKVRVEECDELRQVFPANFGKKAAAEE 704 (848)
Q Consensus 627 ~l~~~~~~~~~~~~~~~~~--~l~~L~~L~l~~c~~L~~l~~~~~~l~~l~~L~~L~i~~C~~L~~~~p~~~~~~~~~~~ 704 (848)
++.++ ..+. .+++|++|+++++. ++.+|.. +..+++|+.|+++++..+..-
T Consensus 500 -l~~lp---------~~~~~~~l~~L~~L~Ls~N~-l~~ip~~---~~~l~~L~~L~Ls~N~~ls~N------------- 552 (636)
T 4eco_A 500 -LTKLS---------DDFRATTLPYLVGIDLSYNS-FSKFPTQ---PLNSSTLKGFGIRNQRDAQGN------------- 552 (636)
T ss_dssp -CCBCC---------GGGSTTTCTTCCEEECCSSC-CSSCCCG---GGGCSSCCEEECCSCBCTTCC-------------
T ss_pred -CCccC---------hhhhhccCCCcCEEECCCCC-CCCcChh---hhcCCCCCEEECCCCcccccC-------------
Confidence 33554 2343 67788888888764 4445443 566788888888765422110
Q ss_pred eeeccccccceeeeecCCCCCCCCCCCCccEEEEecCCCCceecccchhhccccccEEEEecccccceeecCCccccccc
Q 003090 705 MVLYRKRRDQIHIHATTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVRSCPTLQEIIMDDEGEVGLQ 784 (848)
Q Consensus 705 l~l~~l~~~~l~i~~c~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~~l~ 784 (848)
. + ....|..+..+++|++|++++|. +..+|.. . .++|++|++++|+-. .+..... ..
T Consensus 553 --------~---l--~~~~p~~l~~l~~L~~L~Ls~N~-l~~ip~~-~---~~~L~~L~Ls~N~l~-~~~~~~~----~~ 609 (636)
T 4eco_A 553 --------R---T--LREWPEGITLCPSLTQLQIGSND-IRKVNEK-I---TPNISVLDIKDNPNI-SIDLSYV----CP 609 (636)
T ss_dssp --------B---C--CCCCCTTGGGCSSCCEEECCSSC-CCBCCSC-C---CTTCCEEECCSCTTC-EEECTTT----HH
T ss_pred --------c---c--cccChHHHhcCCCCCEEECCCCc-CCccCHh-H---hCcCCEEECcCCCCc-cccHHhc----ch
Confidence 0 0 01224455667888888888854 5777542 2 268888888888633 3211100 00
Q ss_pred CCCccceecccccccccccccccc
Q 003090 785 GASTKKITFPSLFGIKLCDLDSLA 808 (848)
Q Consensus 785 ~~~~~~~~~~sL~~L~i~~cp~L~ 808 (848)
........+...+..+|++||.|.
T Consensus 610 ~~~~~~~~l~~~~~~~i~~C~~L~ 633 (636)
T 4eco_A 610 YIEAGMYMLFYDKTQDIRGCDALD 633 (636)
T ss_dssp HHHTTCCEEECCTTSEEESCGGGC
T ss_pred hhhcccceeecCCccccCCCcccc
Confidence 001112224556777888888875
No 16
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=4.4e-28 Score=276.40 Aligned_cols=457 Identities=15% Similarity=0.093 Sum_probs=299.9
Q ss_pred CceeeecCCCcccCCcccccccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCCCCc
Q 003090 236 TGISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLPS 315 (848)
Q Consensus 236 ~~l~l~~n~l~~lp~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp~ 315 (848)
+.+++++|.++.+|..+. ++|++|++++|.+..+++..|.++++|++|++++ +.+.+. .|.
T Consensus 3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~--------------n~l~~~----~~~ 63 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIISH--------------NRIQYL----DIS 63 (520)
T ss_dssp CEEECTTSCCSSCCCSCC-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCS--------------SCCCEE----EGG
T ss_pred ceEecCCCCccccccccc-ccccEEECCCCcccccChhhccccccccEEecCC--------------CccCCc----ChH
Confidence 468999999999998776 8999999999999999887789999999999999 888874 478
Q ss_pred hhhhcccCcEEEccCccccCCchhhccccCCCEEEccCCCCcc--cChhhccCCcccEEeccCCccccccChhhhhcccc
Q 003090 316 SLSFLINLRTLRLHDRRIQGDLSLIGELSGLEILDLSESDVSE--IPVSFGRLSHLRLLDLTGCYILELIPRGVLSRLRK 393 (848)
Q Consensus 316 ~~~~l~~L~~L~L~~~~~~~~~~~i~~l~~L~~L~l~~~~l~~--lp~~i~~L~~L~~L~l~~~~~~~~~p~~~l~~l~~ 393 (848)
.++.+++|++|++++|.+...+.. .+++|++|++++|.++. +|..++++++|++|++++|.... .. +..+++
T Consensus 64 ~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~-~~~l~~ 137 (520)
T 2z7x_B 64 VFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SS-VLPIAH 137 (520)
T ss_dssp GGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GG-GGGGTT
T ss_pred HhhcccCCCEEecCCCceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hh-cccccc
Confidence 999999999999999988765544 89999999999999985 67899999999999999987654 23 678888
Q ss_pred c--cEEecccccc--ccccccccccccCcccchhhhcccCC-CcEEEeeccCCCC-CCCCC--ccCCCCeEEEEeCCC--
Q 003090 394 L--EELYMSHSFR--HWQFESESEEDSSSNAKFIELGALSR-LTSLHIHIPEGKI-MPSDM--SFQNLTSFSIAIGDL-- 463 (848)
Q Consensus 394 L--~~L~l~~~~~--~~~~~~~~~~~~~~~~~~~~L~~l~~-L~~L~l~~~~~~~-~~~~~--~~~~L~~L~l~~~~~-- 463 (848)
| ++|++++|.+ ... .+..+..+.. .-.+++++|.... ++... .+++|+.|++..+..
T Consensus 138 L~L~~L~l~~n~l~~~~~-------------~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 204 (520)
T 2z7x_B 138 LNISKVLLVLGETYGEKE-------------DPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDN 204 (520)
T ss_dssp SCEEEEEEEECTTTTSSC-------------CTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTT
T ss_pred ceeeEEEeeccccccccc-------------ccccccccccceEEEEeccCcchhhhhhhhhhcccceeecccccccccc
Confidence 8 9999999987 433 3344554442 2234455555432 22222 567777777776531
Q ss_pred ----------CCCCCCcccceEEecccccccccccCccccchhhHHHHHHHHHhhcceeeecccccccccccccc---cc
Q 003090 464 ----------EERPLSDFIGLFLQKFKKRCSRAMGLSQDMRISALHSWIKNLLLRSEILALAEVNYFENIVSDLA---ND 530 (848)
Q Consensus 464 ----------~~~~~~~l~~l~l~~~~~~c~~~~~l~~~~~l~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~---~~ 530 (848)
.....+.++.+.+....-.. ..+..++.+. ..++|++|+++++......+..+. ..
T Consensus 205 ~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~---------~~~~~~~~~~--~~~~L~~L~l~~n~l~~~~p~~~~~~~~~ 273 (520)
T 2z7x_B 205 KCSYFLSILAKLQTNPKLSNLTLNNIETTW---------NSFIRILQLV--WHTTVWYFSISNVKLQGQLDFRDFDYSGT 273 (520)
T ss_dssp TTHHHHHHHHGGGGCTTCCEEEEEEEEEEH---------HHHHHHHHHH--HTSSCSEEEEEEEEEESCCCCCCCCCCSC
T ss_pred ccceeecchhhhccccchhhccccccccCH---------HHHHHHHHHh--hhCcccEEEeecccccCccccchhhcccc
Confidence 12233444555444321000 0011111111 134788888888765544443331 14
Q ss_pred CCCCCcEEEEecCCCceeecccccccccccCCCccEEecccccccccccccccccccCCCcceEEEecCchhhHhhhHHH
Q 003090 531 GFNELMFLVIFRCNEMKYLLNSLERTLRVTLHKLEWLFIRENQNFVEICHGQLPAGCLSNVKRSDVVDCGSILKILLSHL 610 (848)
Q Consensus 531 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~l~~~~ 610 (848)
.+++|+.+++.++.. .++.. .......-++|+.|+++++. +..+ .. ...+++|++|++++|.-- ..+|..+
T Consensus 274 ~l~~L~~l~l~~n~~--~~p~~-~~~~~~~~~~L~~L~l~~n~-l~~~---~~-~~~l~~L~~L~Ls~n~l~-~~~~~~~ 344 (520)
T 2z7x_B 274 SLKALSIHQVVSDVF--GFPQS-YIYEIFSNMNIKNFTVSGTR-MVHM---LC-PSKISPFLHLDFSNNLLT-DTVFENC 344 (520)
T ss_dssp CCCEEEEEEEEECCC--CSCTH-HHHHHHHTCCCSEEEEESSC-CCCC---CC-CSSCCCCCEEECCSSCCC-TTTTTTC
T ss_pred cCceeEeccccccce--ecchh-hhhcccccCceeEEEcCCCc-cccc---cc-hhhCCcccEEEeECCccC-hhhhhhh
Confidence 567777777777653 22100 00011111568888888874 3222 11 146888888888887543 4344433
Q ss_pred HHhhccCcEEEEeccCCceeeeeccccccccccccccCCcCEEecCCCccccccccCCCccccccCccEEEeecCccccc
Q 003090 611 VQSFQNLQRLRVYSCGLLVSVFEIERVNIAKEETELFSSLEKLTLWDLPRMTDIWKGDTQFVSLHNLKKVRVEECDELRQ 690 (848)
Q Consensus 611 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~l~~l~~L~~L~i~~C~~L~~ 690 (848)
..+++|++|++++|.- +.++.. ...+..+++|++|+++++.-...++... +..+++|++|++++|. ++.
T Consensus 345 -~~l~~L~~L~L~~N~l-~~l~~~------~~~~~~l~~L~~L~Ls~N~l~~~l~~~~--~~~l~~L~~L~Ls~N~-l~~ 413 (520)
T 2z7x_B 345 -GHLTELETLILQMNQL-KELSKI------AEMTTQMKSLQQLDISQNSVSYDEKKGD--CSWTKSLLSLNMSSNI-LTD 413 (520)
T ss_dssp -CCCSSCCEEECCSSCC-CBHHHH------HHHHTTCTTCCEEECCSSCCBCCGGGCS--CCCCTTCCEEECCSSC-CCG
T ss_pred -ccCCCCCEEEccCCcc-Cccccc------hHHHhhCCCCCEEECCCCcCCcccccch--hccCccCCEEECcCCC-CCc
Confidence 6788888888888753 222110 0345678888888888875333365542 5667888888888875 322
Q ss_pred cccCccccccccceeeeccccccceeeeecCCCCCCCCCCCCccEEEEecCCCCceecccchhhccccccEEEEeccccc
Q 003090 691 VFPANFGKKAAAEEMVLYRKRRDQIHIHATTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVRSCPTL 770 (848)
Q Consensus 691 ~~p~~~~~~~~~~~l~l~~l~~~~l~i~~c~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~L 770 (848)
..|.. + .++|+.|++++| +++.+|. .+..+++|++|++++| .+
T Consensus 414 ~~~~~-------------------------------l--~~~L~~L~Ls~N-~l~~ip~--~~~~l~~L~~L~L~~N-~l 456 (520)
T 2z7x_B 414 TIFRC-------------------------------L--PPRIKVLDLHSN-KIKSIPK--QVVKLEALQELNVASN-QL 456 (520)
T ss_dssp GGGGS-------------------------------C--CTTCCEEECCSS-CCCCCCG--GGGGCTTCCEEECCSS-CC
T ss_pred chhhh-------------------------------h--cccCCEEECCCC-cccccch--hhhcCCCCCEEECCCC-cC
Confidence 21211 1 167888888886 6777754 3458888888888888 45
Q ss_pred ceeecCCcccccccCCCccceeccccccccccccccccccc
Q 003090 771 QEIIMDDEGEVGLQGASTKKITFPSLFGIKLCDLDSLACFC 811 (848)
Q Consensus 771 ~~l~~~~~~~~~l~~~~~~~~~~~sL~~L~i~~cp~L~~~~ 811 (848)
+.++. . .+.. +++|++|++.++| +...|
T Consensus 457 ~~l~~--~---~~~~-------l~~L~~L~l~~N~-~~c~c 484 (520)
T 2z7x_B 457 KSVPD--G---IFDR-------LTSLQKIWLHTNP-WDCSC 484 (520)
T ss_dssp CCCCT--T---TTTT-------CTTCCEEECCSSC-BCCCH
T ss_pred CccCH--H---Hhcc-------CCcccEEECcCCC-CcccC
Confidence 55532 1 1222 6888888888877 55443
No 17
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.95 E-value=4.3e-28 Score=285.59 Aligned_cols=354 Identities=14% Similarity=0.131 Sum_probs=198.2
Q ss_pred cCCcc-cccccceeecccCcCcc------------------cChHH-HccCCceeEEEccCcccccccccCCCCCCCCCC
Q 003090 248 VPDEL-ECPKLQALFLQENSPLA------------------IPDRF-FQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPS 307 (848)
Q Consensus 248 lp~~~-~~~~L~~L~l~~~~~~~------------------~~~~~-~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~ 307 (848)
+|..+ .+++|++|++++|.+.. +|+.+ |.++++|++|++++ +.+.+
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~--------------N~l~~ 505 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYN--------------CPNMT 505 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEES--------------CTTCC
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcC--------------CCCCc
Confidence 45444 55666666666665544 55543 23566666666666 44444
Q ss_pred CCCCCCCchhhhcccCcEEEccCcc-ccC--Cchhhcccc-------CCCEEEccCCCCcccCh--hhccCCcccEEecc
Q 003090 308 SPLFLLPSSLSFLINLRTLRLHDRR-IQG--DLSLIGELS-------GLEILDLSESDVSEIPV--SFGRLSHLRLLDLT 375 (848)
Q Consensus 308 ~~~~~lp~~~~~l~~L~~L~L~~~~-~~~--~~~~i~~l~-------~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~l~ 375 (848)
. +|..++++++|++|++++|+ +.+ .|..++++. +|++|++++|.++.+|. .++++++|++|+++
T Consensus 506 ~----iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls 581 (876)
T 4ecn_A 506 Q----LPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCV 581 (876)
T ss_dssp S----CCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECT
T ss_pred c----ChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECC
Confidence 4 66666666666666666665 443 234444444 66666666666666666 56666666666666
Q ss_pred CCccccccChhhhhccccccEEeccccccccccccccccccCcccchhhhcccCC-CcEEEeeccCCCCCCCCC-c--cC
Q 003090 376 GCYILELIPRGVLSRLRKLEELYMSHSFRHWQFESESEEDSSSNAKFIELGALSR-LTSLHIHIPEGKIMPSDM-S--FQ 451 (848)
Q Consensus 376 ~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~-L~~L~l~~~~~~~~~~~~-~--~~ 451 (848)
+|.+. .+| . ++++++|+.|++++|.+. . .+..+..+++ |+.|++++|.+..+|..+ . .+
T Consensus 582 ~N~l~-~lp-~-~~~L~~L~~L~Ls~N~l~-~-------------lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~ 644 (876)
T 4ecn_A 582 HNKVR-HLE-A-FGTNVKLTDLKLDYNQIE-E-------------IPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVY 644 (876)
T ss_dssp TSCCC-BCC-C-CCTTSEESEEECCSSCCS-C-------------CCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSS
T ss_pred CCCcc-cch-h-hcCCCcceEEECcCCccc-c-------------chHHHhhccccCCEEECcCCCCCcCchhhhccccC
Confidence 65544 566 3 566666666666666554 2 3344566666 666666666666665544 2 22
Q ss_pred CCCeEEEEeCCCCCCCCCcccceEEecccccccccccCccccchhhHHHHHHHHHhhcceeeeccccccccccccccccC
Q 003090 452 NLTSFSIAIGDLEERPLSDFIGLFLQKFKKRCSRAMGLSQDMRISALHSWIKNLLLRSEILALAEVNYFENIVSDLANDG 531 (848)
Q Consensus 452 ~L~~L~l~~~~~~~~~~~~l~~l~l~~~~~~c~~~~~l~~~~~l~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 531 (848)
+|+.|++..+..... .+.+. ..+.. + ..++|+.|+++++... .++..+ ...
T Consensus 645 ~L~~L~Ls~N~l~g~-ip~l~-~~l~~----------------~---------~~~~L~~L~Ls~N~L~-~lp~~~-~~~ 695 (876)
T 4ecn_A 645 VMGSVDFSYNKIGSE-GRNIS-CSMDD----------------Y---------KGINASTVTLSYNEIQ-KFPTEL-FAT 695 (876)
T ss_dssp CEEEEECCSSCTTTT-SSSCS-SCTTT----------------C---------CCCCEEEEECCSSCCC-SCCHHH-HHT
T ss_pred CCCEEECcCCcCCCc-cccch-hhhcc----------------c---------cCCCcCEEEccCCcCC-ccCHHH-Hcc
Confidence 356666554332110 00000 00000 0 0246777777776544 223222 125
Q ss_pred CCCCcEEEEecCCCceeecccccccc---cccCCCccEEecccccccccccccccccccCCCcceEEEecCchhhHhhhH
Q 003090 532 FNELMFLVIFRCNEMKYLLNSLERTL---RVTLHKLEWLFIRENQNFVEICHGQLPAGCLSNVKRSDVVDCGSILKILLS 608 (848)
Q Consensus 532 l~~L~~L~l~~~~~l~~l~~~~~~~~---~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~l~~ 608 (848)
+++|+.|+++++. ++.++....... ...+++|++|+|++| +++.+... +....+++|+.|++++|. + ..+|.
T Consensus 696 l~~L~~L~Ls~N~-L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~~-l~~~~l~~L~~L~Ls~N~-L-~~lp~ 770 (876)
T 4ecn_A 696 GSPISTIILSNNL-MTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDD-FRATTLPYLSNMDVSYNC-F-SSFPT 770 (876)
T ss_dssp TCCCSEEECCSCC-CSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCCCGG-GSTTTCTTCCEEECCSSC-C-SSCCC
T ss_pred CCCCCEEECCCCc-CCccChHHhccccccccccCCccEEECCCC-CCccchHH-hhhccCCCcCEEEeCCCC-C-Cccch
Confidence 6788888888774 333322111000 123347888888887 45543211 111257888888888764 4 44665
Q ss_pred HHHHhhccCcEEEEeccC------CceeeeeccccccccccccccCCcCEEecCCCccccccccCCCccccccCccEEEe
Q 003090 609 HLVQSFQNLQRLRVYSCG------LLVSVFEIERVNIAKEETELFSSLEKLTLWDLPRMTDIWKGDTQFVSLHNLKKVRV 682 (848)
Q Consensus 609 ~~~~~l~~L~~L~l~~c~------~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~l~~l~~L~~L~i 682 (848)
.+ ..+++|+.|++++|+ -...+| ..+..+++|++|++++|. +..+|... +++|+.|+|
T Consensus 771 ~l-~~L~~L~~L~Ls~N~~ls~N~l~~~ip---------~~l~~L~~L~~L~Ls~N~-L~~Ip~~l-----~~~L~~LdL 834 (876)
T 4ecn_A 771 QP-LNSSQLKAFGIRHQRDAEGNRILRQWP---------TGITTCPSLIQLQIGSND-IRKVDEKL-----TPQLYILDI 834 (876)
T ss_dssp GG-GGCTTCCEEECCCCBCTTCCBCCCCCC---------TTGGGCSSCCEEECCSSC-CCBCCSCC-----CSSSCEEEC
T ss_pred hh-hcCCCCCEEECCCCCCcccccccccCh---------HHHhcCCCCCEEECCCCC-CCccCHhh-----cCCCCEEEC
Confidence 44 577888888887643 222333 456678888888888875 46666542 368888888
Q ss_pred ecCc
Q 003090 683 EECD 686 (848)
Q Consensus 683 ~~C~ 686 (848)
++|+
T Consensus 835 s~N~ 838 (876)
T 4ecn_A 835 ADNP 838 (876)
T ss_dssp CSCT
T ss_pred CCCC
Confidence 8876
No 18
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.95 E-value=6.7e-27 Score=281.11 Aligned_cols=470 Identities=15% Similarity=0.113 Sum_probs=260.9
Q ss_pred HHHhccCCCceeeecC-CCccc-CCcc-cccccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCC
Q 003090 228 EIAGWLDLTGISLMFN-DIHEV-PDEL-ECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPP 304 (848)
Q Consensus 228 ~i~~~~~l~~l~l~~n-~l~~l-p~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~ 304 (848)
.+.....++.|++++| .+..+ |..+ .+++|++|++++|.+..+++..|.++++|++|++++ +.
T Consensus 43 ~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~--------------n~ 108 (844)
T 3j0a_A 43 SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYF--------------CG 108 (844)
T ss_dssp SCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTT--------------CC
T ss_pred HCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcC--------------CC
Confidence 3445556888999888 44466 4444 888999999999988887666678899999999998 77
Q ss_pred CCCCCCCCCCch--hhhcccCcEEEccCccccCCc--hhhccccCCCEEEccCCCCc-ccChhhccC--CcccEEeccCC
Q 003090 305 LPSSPLFLLPSS--LSFLINLRTLRLHDRRIQGDL--SLIGELSGLEILDLSESDVS-EIPVSFGRL--SHLRLLDLTGC 377 (848)
Q Consensus 305 l~~~~~~~lp~~--~~~l~~L~~L~L~~~~~~~~~--~~i~~l~~L~~L~l~~~~l~-~lp~~i~~L--~~L~~L~l~~~ 377 (848)
+.+. .|.. ++++++|++|++++|.+.... ..++++++|++|++++|.++ ..|..+..+ ++|+.|++++|
T Consensus 109 l~~~----~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n 184 (844)
T 3j0a_A 109 LSDA----VLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAAN 184 (844)
T ss_dssp CSSC----CSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCS
T ss_pred CCcc----cccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCC
Confidence 7654 4544 888899999999998877654 56889999999999998887 456667766 78888888888
Q ss_pred ccccccChhhhhcccc------ccEEeccccccccccccccc-c----------------------ccCcccchhhhcc-
Q 003090 378 YILELIPRGVLSRLRK------LEELYMSHSFRHWQFESESE-E----------------------DSSSNAKFIELGA- 427 (848)
Q Consensus 378 ~~~~~~p~~~l~~l~~------L~~L~l~~~~~~~~~~~~~~-~----------------------~~~~~~~~~~L~~- 427 (848)
...+..|.. ++.+.+ |+.|++++|.+....+..-. . ..-.......+..
T Consensus 185 ~l~~~~~~~-~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l 263 (844)
T 3j0a_A 185 SLYSRVSVD-WGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGL 263 (844)
T ss_dssp BSCCCCCCC-CCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTT
T ss_pred ccccccccc-hhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhcc
Confidence 777766665 555554 88888888865543221000 0 0000011112222
Q ss_pred -cCCCcEEEeeccCCCCCCCCC--ccCCCCeEEEEeCCCCCCCCCcccceEEecccccccccccCccccchhhHHHHHHH
Q 003090 428 -LSRLTSLHIHIPEGKIMPSDM--SFQNLTSFSIAIGDLEERPLSDFIGLFLQKFKKRCSRAMGLSQDMRISALHSWIKN 504 (848)
Q Consensus 428 -l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~~~c~~~~~l~~~~~l~~l~~~~~~ 504 (848)
.++|+.|++++|.+..++... .+++|+.|++..+......+... .
T Consensus 264 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~--------------------------------~ 311 (844)
T 3j0a_A 264 ARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAF--------------------------------Y 311 (844)
T ss_dssp TTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTT--------------------------------T
T ss_pred ccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHh--------------------------------c
Confidence 268999999999887665443 78999999998665410000000 0
Q ss_pred HHhhcceeeeccccccccccccccccCCCCCcEEEEecCCCceeecccccccccccCCCccEEecccccccccccccccc
Q 003090 505 LLLRSEILALAEVNYFENIVSDLANDGFNELMFLVIFRCNEMKYLLNSLERTLRVTLHKLEWLFIRENQNFVEICHGQLP 584 (848)
Q Consensus 505 ~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~ 584 (848)
.+++|++|+++++......+..+ ..+++|+.|++.++. +..++ ......+++|++|+++++. ++.+ +
T Consensus 312 ~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~N~-i~~~~----~~~~~~l~~L~~L~Ls~N~-l~~i-----~ 378 (844)
T 3j0a_A 312 GLDNLQVLNLSYNLLGELYSSNF--YGLPKVAYIDLQKNH-IAIIQ----DQTFKFLEKLQTLDLRDNA-LTTI-----H 378 (844)
T ss_dssp TCSSCCEEEEESCCCSCCCSCSC--SSCTTCCEEECCSCC-CCCCC----SSCSCSCCCCCEEEEETCC-SCCC-----S
T ss_pred CCCCCCEEECCCCCCCccCHHHh--cCCCCCCEEECCCCC-CCccC----hhhhcCCCCCCEEECCCCC-CCcc-----c
Confidence 02455666665554332222222 345666666666553 22221 1123445666666666552 2221 1
Q ss_pred cccCCCcceEEEecCchhhHhhhHHHHHhhccCcEEEEeccCCceeeeeccccccccccccccCCcCEEecCCCcccccc
Q 003090 585 AGCLSNVKRSDVVDCGSILKILLSHLVQSFQNLQRLRVYSCGLLVSVFEIERVNIAKEETELFSSLEKLTLWDLPRMTDI 664 (848)
Q Consensus 585 ~~~l~~L~~L~l~~c~~l~~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l 664 (848)
.+++|+.|.+.+|. + ..+|.. ..+++.|+++++. ++.++.. ..+..+++|++|+++++. +..+
T Consensus 379 --~~~~L~~L~l~~N~-l-~~l~~~----~~~l~~L~ls~N~-l~~l~~~-------~~~~~l~~L~~L~Ls~N~-l~~~ 441 (844)
T 3j0a_A 379 --FIPSIPDIFLSGNK-L-VTLPKI----NLTANLIHLSENR-LENLDIL-------YFLLRVPHLQILILNQNR-FSSC 441 (844)
T ss_dssp --SCCSCSEEEEESCC-C-CCCCCC----CTTCCEEECCSCC-CCSSTTH-------HHHTTCTTCCEEEEESCC-CCCC
T ss_pred --CCCCcchhccCCCC-c-cccccc----ccccceeecccCc-cccCchh-------hhhhcCCccceeeCCCCc-cccc
Confidence 25556666665542 3 333321 2345555554432 1111100 112244555555555432 2222
Q ss_pred ccCCCccccccCccEEEeecCccccccccCccccccccceeeeccccccceeeeec--CC-CCCCCCCCCCccEEEEecC
Q 003090 665 WKGDTQFVSLHNLKKVRVEECDELRQVFPANFGKKAAAEEMVLYRKRRDQIHIHAT--TS-TSSPTPSLGNLVSITIRGC 741 (848)
Q Consensus 665 ~~~~~~l~~l~~L~~L~i~~C~~L~~~~p~~~~~~~~~~~l~l~~l~~~~l~i~~c--~~-~~~~~~~l~~L~~L~i~~C 741 (848)
+... .+..+++|+.|+++++. ++...+....... --.+++| +.+++.+| .. .+..+..+++|+.|+++++
T Consensus 442 ~~~~-~~~~~~~L~~L~Ls~N~-l~~~~~~~~~~~~---~~~l~~L--~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 514 (844)
T 3j0a_A 442 SGDQ-TPSENPSLEQLFLGENM-LQLAWETELCWDV---FEGLSHL--QVLYLNHNYLNSLPPGVFSHLTALRGLSLNSN 514 (844)
T ss_dssp CSSS-SSCSCTTCCBCEEESCC-CSSSCCSCCCSSC---SSCBCCE--ECCCCCHHHHTTCCTTSSSSCCSCSEEEEESC
T ss_pred cccc-ccccCCccccccCCCCc-cccccccccchhh---hcCcccc--cEEECCCCcccccChhHccchhhhheeECCCC
Confidence 1111 12234455555555432 2111000000000 0001222 23333332 11 2234567788888888884
Q ss_pred CCCceecccchhhccccccEEEEecccccceeecCCcccccccCCCccceeccccccccccccc
Q 003090 742 GKLRNLFTTSMVKSLVRLESLEVRSCPTLQEIIMDDEGEVGLQGASTKKITFPSLFGIKLCDLD 805 (848)
Q Consensus 742 ~~L~~l~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~~l~~~~~~~~~~~sL~~L~i~~cp 805 (848)
+|+.+++... . ++|+.|+++++. +..+. ++. +++|+.|++.+.|
T Consensus 515 -~l~~l~~~~~-~--~~L~~L~Ls~N~-l~~~~-~~~--------------~~~L~~l~l~~Np 558 (844)
T 3j0a_A 515 -RLTVLSHNDL-P--ANLEILDISRNQ-LLAPN-PDV--------------FVSLSVLDITHNK 558 (844)
T ss_dssp -CCSSCCCCCC-C--SCCCEEEEEEEC-CCCCC-SCC--------------CSSCCEEEEEEEC
T ss_pred -CCCccChhhh-h--ccccEEECCCCc-CCCCC-hhH--------------hCCcCEEEecCCC
Confidence 6777765332 2 778888888874 32221 111 5677777776655
No 19
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.95 E-value=6.1e-28 Score=280.29 Aligned_cols=360 Identities=14% Similarity=0.150 Sum_probs=267.6
Q ss_pred CcccCCcc-cccccceeecccCcCcc------------------cChHHHc--cCCceeEEEccCcccccccccCCCCCC
Q 003090 245 IHEVPDEL-ECPKLQALFLQENSPLA------------------IPDRFFQ--GMKDLQVLDLGGIRRFSFSVRFPFLFP 303 (848)
Q Consensus 245 l~~lp~~~-~~~~L~~L~l~~~~~~~------------------~~~~~~~--~~~~Lr~L~l~~~~~~~~~~~~~~~~~ 303 (848)
++.+|..+ .+++|++|++++|.+.. +|..+ . ++++|++|++++ +
T Consensus 195 l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l-~~~~l~~L~~L~L~~--------------n 259 (636)
T 4eco_A 195 ITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDL-KWDNLKDLTDVEVYN--------------C 259 (636)
T ss_dssp EEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCC-CGGGCTTCCEEEEEC--------------C
T ss_pred CccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhh-hhcccCCCCEEEecC--------------C
Confidence 33577777 89999999999998877 88874 6 899999999999 7
Q ss_pred CCCCCCCCCCCchhhhcccCcEEEccCcc-ccC--Cchhhccc------cCCCEEEccCCCCcccCh--hhccCCcccEE
Q 003090 304 PLPSSPLFLLPSSLSFLINLRTLRLHDRR-IQG--DLSLIGEL------SGLEILDLSESDVSEIPV--SFGRLSHLRLL 372 (848)
Q Consensus 304 ~l~~~~~~~lp~~~~~l~~L~~L~L~~~~-~~~--~~~~i~~l------~~L~~L~l~~~~l~~lp~--~i~~L~~L~~L 372 (848)
.+.+. +|..++++++|++|++++|. +.+ .|..++++ ++|++|++++|.++.+|. .++++++|++|
T Consensus 260 ~l~~~----~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L 335 (636)
T 4eco_A 260 PNLTK----LPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGML 335 (636)
T ss_dssp TTCSS----CCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEE
T ss_pred cCCcc----ChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEE
Confidence 77776 99999999999999999998 665 45777776 999999999999999999 89999999999
Q ss_pred eccCCccccccChhhhhccccccEEeccccccccccccccccccCcccchhhhcccCC-CcEEEeeccCCCCCCCCC-c-
Q 003090 373 DLTGCYILELIPRGVLSRLRKLEELYMSHSFRHWQFESESEEDSSSNAKFIELGALSR-LTSLHIHIPEGKIMPSDM-S- 449 (848)
Q Consensus 373 ~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~-L~~L~l~~~~~~~~~~~~-~- 449 (848)
++++|...+.+| . ++++++|++|++++|.+. . .+..+..+++ |+.|++++|.+..+|..+ .
T Consensus 336 ~L~~N~l~g~ip-~-~~~l~~L~~L~L~~N~l~-~-------------lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~ 399 (636)
T 4eco_A 336 ECLYNQLEGKLP-A-FGSEIKLASLNLAYNQIT-E-------------IPANFCGFTEQVENLSFAHNKLKYIPNIFDAK 399 (636)
T ss_dssp ECCSCCCEEECC-C-CEEEEEESEEECCSSEEE-E-------------CCTTSEEECTTCCEEECCSSCCSSCCSCCCTT
T ss_pred eCcCCcCccchh-h-hCCCCCCCEEECCCCccc-c-------------ccHhhhhhcccCcEEEccCCcCcccchhhhhc
Confidence 999998887899 5 899999999999999887 3 5667999999 999999999999999876 3
Q ss_pred -cCCCCeEEEEeCCCCCCCCCcccceEEecccccccccccCccccchhhHHHHHHHHHhhcceeeecccccccccccccc
Q 003090 450 -FQNLTSFSIAIGDLEERPLSDFIGLFLQKFKKRCSRAMGLSQDMRISALHSWIKNLLLRSEILALAEVNYFENIVSDLA 528 (848)
Q Consensus 450 -~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~~~c~~~~~l~~~~~l~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 528 (848)
+++|+.|++..+......+..+.......+. .++|+.|+++++... .++..+
T Consensus 400 ~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~-------------------------~~~L~~L~Ls~N~l~-~lp~~~- 452 (636)
T 4eco_A 400 SVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFK-------------------------GINVSSINLSNNQIS-KFPKEL- 452 (636)
T ss_dssp CSSCEEEEECCSSCTTTTTTCSSCTTCSSCCC-------------------------CCCEEEEECCSSCCC-SCCTHH-
T ss_pred ccCccCEEECcCCcCCCcchhhhccccccccc-------------------------CCCCCEEECcCCccC-cCCHHH-
Confidence 4489999988665422111111100000000 257888888877654 333322
Q ss_pred ccCCCCCcEEEEecCCCceeecccccccc---cccCCCccEEecccccccccccccccccccCCCcceEEEecCchhhHh
Q 003090 529 NDGFNELMFLVIFRCNEMKYLLNSLERTL---RVTLHKLEWLFIRENQNFVEICHGQLPAGCLSNVKRSDVVDCGSILKI 605 (848)
Q Consensus 529 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~~---~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~ 605 (848)
...+++|++|+++++... .++....... ...+++|++|+++++ +++.+... +....+++|+.|++++|. + ..
T Consensus 453 ~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~-~~~~~l~~L~~L~Ls~N~-l-~~ 527 (636)
T 4eco_A 453 FSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFN-KLTKLSDD-FRATTLPYLVGIDLSYNS-F-SK 527 (636)
T ss_dssp HHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSS-CCCBCCGG-GSTTTCTTCCEEECCSSC-C-SS
T ss_pred HccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCC-cCCccChh-hhhccCCCcCEEECCCCC-C-CC
Confidence 134789999999988543 4432111100 122348999999988 45544211 111268999999999975 4 45
Q ss_pred hhHHHHHhhccCcEEEEeccC------CceeeeeccccccccccccccCCcCEEecCCCccccccccCCCccccccCccE
Q 003090 606 LLSHLVQSFQNLQRLRVYSCG------LLVSVFEIERVNIAKEETELFSSLEKLTLWDLPRMTDIWKGDTQFVSLHNLKK 679 (848)
Q Consensus 606 l~~~~~~~l~~L~~L~l~~c~------~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~l~~l~~L~~ 679 (848)
+|..+ ..+++|++|++++|. -...+| ..+..+++|++|+++++. +..+|... +++|+.
T Consensus 528 ip~~~-~~l~~L~~L~Ls~N~~ls~N~l~~~~p---------~~l~~l~~L~~L~Ls~N~-l~~ip~~~-----~~~L~~ 591 (636)
T 4eco_A 528 FPTQP-LNSSTLKGFGIRNQRDAQGNRTLREWP---------EGITLCPSLTQLQIGSND-IRKVNEKI-----TPNISV 591 (636)
T ss_dssp CCCGG-GGCSSCCEEECCSCBCTTCCBCCCCCC---------TTGGGCSSCCEEECCSSC-CCBCCSCC-----CTTCCE
T ss_pred cChhh-hcCCCCCEEECCCCcccccCcccccCh---------HHHhcCCCCCEEECCCCc-CCccCHhH-----hCcCCE
Confidence 77654 678999999997643 233343 567789999999999976 47776652 389999
Q ss_pred EEeecCcc
Q 003090 680 VRVEECDE 687 (848)
Q Consensus 680 L~i~~C~~ 687 (848)
|++++|+-
T Consensus 592 L~Ls~N~l 599 (636)
T 4eco_A 592 LDIKDNPN 599 (636)
T ss_dssp EECCSCTT
T ss_pred EECcCCCC
Confidence 99999863
No 20
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.95 E-value=2.1e-26 Score=269.90 Aligned_cols=149 Identities=18% Similarity=0.198 Sum_probs=87.3
Q ss_pred ccccCCcCEEecCCCccccccccCCCccccccCccEEEeecCccccccccCccccccccceeeeccccccceeeeecC--
Q 003090 644 TELFSSLEKLTLWDLPRMTDIWKGDTQFVSLHNLKKVRVEECDELRQVFPANFGKKAAAEEMVLYRKRRDQIHIHATT-- 721 (848)
Q Consensus 644 ~~~l~~L~~L~l~~c~~L~~l~~~~~~l~~l~~L~~L~i~~C~~L~~~~p~~~~~~~~~~~l~l~~l~~~~l~i~~c~-- 721 (848)
+..+++++.++++.+. +..+... .+..+++|+.|+++++.....+.|..+.. +++| +.+++.+|.
T Consensus 441 ~~~l~~l~~l~ls~n~-l~~~~~~--~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~--------l~~L--~~L~Ls~N~L~ 507 (635)
T 4g8a_A 441 FLSLRNLIYLDISHTH-TRVAFNG--IFNGLSSLEVLKMAGNSFQENFLPDIFTE--------LRNL--TFLDLSQCQLE 507 (635)
T ss_dssp TTTCTTCCEEECTTSC-CEECCTT--TTTTCTTCCEEECTTCEEGGGEECSCCTT--------CTTC--CEEECTTSCCC
T ss_pred cccccccccccccccc-ccccccc--ccccchhhhhhhhhhcccccccCchhhhh--------cccc--CEEECCCCccC
Confidence 3445555555555432 2222222 13556677777777666555544443332 2233 334444431
Q ss_pred -CCCCCCCCCCCccEEEEecCCCCceecccchhhccccccEEEEecccccceeecCCcccccccCCCccceecccccccc
Q 003090 722 -STSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVRSCPTLQEIIMDDEGEVGLQGASTKKITFPSLFGIK 800 (848)
Q Consensus 722 -~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~~l~~~~~~~~~~~sL~~L~ 800 (848)
-.+..+..+++|++|+++++ +|+.+++ ..+.++++|++|+++++. +..+. .. .+..+ +++|+.|+
T Consensus 508 ~l~~~~f~~l~~L~~L~Ls~N-~l~~l~~-~~~~~l~~L~~L~Ls~N~-l~~~~--~~---~l~~l------~~~L~~L~ 573 (635)
T 4g8a_A 508 QLSPTAFNSLSSLQVLNMSHN-NFFSLDT-FPYKCLNSLQVLDYSLNH-IMTSK--KQ---ELQHF------PSSLAFLN 573 (635)
T ss_dssp EECTTTTTTCTTCCEEECTTS-CCCBCCC-GGGTTCTTCCEEECTTSC-CCBCC--SS---CTTCC------CTTCCEEE
T ss_pred CcChHHHcCCCCCCEEECCCC-cCCCCCh-hHHhCCCCCCEEECCCCc-CCCCC--HH---HHHhh------hCcCCEEE
Confidence 12456778899999999984 7888865 457889999999999885 44441 11 22221 47899999
Q ss_pred cccccccccccCCCcccccc
Q 003090 801 LCDLDSLACFCSTAHHFNFV 820 (848)
Q Consensus 801 i~~cp~L~~~~~~~~~~~~~ 820 (848)
+.+.| +...|.......|+
T Consensus 574 L~~Np-~~C~C~~~~~~~wl 592 (635)
T 4g8a_A 574 LTQND-FACTCEHQSFLQWI 592 (635)
T ss_dssp CTTCC-BCCSGGGHHHHHHH
T ss_pred eeCCC-CcccCCcHHHHHHH
Confidence 98877 66655543334444
No 21
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.94 E-value=7.9e-26 Score=259.86 Aligned_cols=457 Identities=19% Similarity=0.168 Sum_probs=280.6
Q ss_pred CceeeecCCCcccCCcccccccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCCCCc
Q 003090 236 TGISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLPS 315 (848)
Q Consensus 236 ~~l~l~~n~l~~lp~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp~ 315 (848)
+.+++++|.++.+|..+. +++++|++++|.+..++...|.++++|++|++++ +.+.+. .|.
T Consensus 34 ~~l~ls~~~L~~ip~~~~-~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~--------------N~l~~~----~~~ 94 (562)
T 3a79_B 34 SMVDYSNRNLTHVPKDLP-PRTKALSLSQNSISELRMPDISFLSELRVLRLSH--------------NRIRSL----DFH 94 (562)
T ss_dssp CEEECTTSCCCSCCTTSC-TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCS--------------CCCCEE----CTT
T ss_pred cEEEcCCCCCccCCCCCC-CCcCEEECCCCCccccChhhhccCCCccEEECCC--------------CCCCcC----CHH
Confidence 679999999999998765 8999999999999999877789999999999999 888874 478
Q ss_pred hhhhcccCcEEEccCccccCCchhhccccCCCEEEccCCCCcccC--hhhccCCcccEEeccCCccccccChhhhhcccc
Q 003090 316 SLSFLINLRTLRLHDRRIQGDLSLIGELSGLEILDLSESDVSEIP--VSFGRLSHLRLLDLTGCYILELIPRGVLSRLRK 393 (848)
Q Consensus 316 ~~~~l~~L~~L~L~~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp--~~i~~L~~L~~L~l~~~~~~~~~p~~~l~~l~~ 393 (848)
.+..+++|++|++++|.+...+.. .+++|++|++++|.++.+| ..++++++|++|++++|..... . +..+++
T Consensus 95 ~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~-~~~l~~ 168 (562)
T 3a79_B 95 VFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---D-LLPVAH 168 (562)
T ss_dssp TTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---T-TGGGTT
T ss_pred HhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---c-hhhhhh
Confidence 899999999999999987765544 8999999999999998654 7899999999999999876542 2 556666
Q ss_pred c--cEEecccccc--ccccccccccccCcccchhhhcccC--CCcEEEeeccCCCCCCCCC---ccCCCCeEEEEeCCC-
Q 003090 394 L--EELYMSHSFR--HWQFESESEEDSSSNAKFIELGALS--RLTSLHIHIPEGKIMPSDM---SFQNLTSFSIAIGDL- 463 (848)
Q Consensus 394 L--~~L~l~~~~~--~~~~~~~~~~~~~~~~~~~~L~~l~--~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~- 463 (848)
| ++|++++|.+ ... .+..+..+. .| .++++.|.+....... .+++|+.+++..+..
T Consensus 169 L~L~~L~L~~n~l~~~~~-------------~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 234 (562)
T 3a79_B 169 LHLSCILLDLVSYHIKGG-------------ETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDEN 234 (562)
T ss_dssp SCEEEEEEEESSCCCCSS-------------SCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTT
T ss_pred ceeeEEEeeccccccccc-------------CcccccccCcceE-EEEecCccchhhhhhhcccccceEEEecccccccc
Confidence 6 9999999887 443 233344433 12 3455555544322221 456666666664321
Q ss_pred ---------CCCCCCcccceEEecccccccccccCccccchhhHHHHHHHHHhhcceeeeccccccccccccccccCCCC
Q 003090 464 ---------EERPLSDFIGLFLQKFKKRCSRAMGLSQDMRISALHSWIKNLLLRSEILALAEVNYFENIVSDLANDGFNE 534 (848)
Q Consensus 464 ---------~~~~~~~l~~l~l~~~~~~c~~~~~l~~~~~l~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~ 534 (848)
.....+.++.+.+....-. ...+..++.+.. .++|++|+++++.....++..+.....++
T Consensus 235 ~~~l~~~~~~l~~l~~L~~L~L~~~~l~---------~~~~~~~~~~~~--~~~L~~L~l~~n~l~~~ip~~~~~~~~~~ 303 (562)
T 3a79_B 235 CQRLMTFLSELTRGPTLLNVTLQHIETT---------WKCSVKLFQFFW--PRPVEYLNIYNLTITERIDREEFTYSETA 303 (562)
T ss_dssp HHHHHHHHHHHHSCSSCEEEEEEEEEEC---------HHHHHHHHHHHT--TSSEEEEEEEEEEECSCCCCCCCCCCSCS
T ss_pred cchHHHHHHHHhccCcceEEEecCCcCc---------HHHHHHHHHhhh--cccccEEEEeccEeeccccchhhhccccc
Confidence 0112233333333322100 001112222211 24788888887765544443321111255
Q ss_pred CcEEEEecCCCce-eecccccccccccCCCccEEecccccccccccccccccccCCCcceEEEecCchhhHhhhHHHHHh
Q 003090 535 LMFLVIFRCNEMK-YLLNSLERTLRVTLHKLEWLFIRENQNFVEICHGQLPAGCLSNVKRSDVVDCGSILKILLSHLVQS 613 (848)
Q Consensus 535 L~~L~l~~~~~l~-~l~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~l~~~~~~~ 613 (848)
|+.|.+.+..... .++.. ........++|++|+++++. +..+ ...+.+++|+.|++++|.-- ...|.. +..
T Consensus 304 L~~L~~~~~~~~~~~~p~~-~~~~~~~~~~L~~L~l~~n~-~~~~----~~~~~l~~L~~L~l~~n~l~-~~~~~~-~~~ 375 (562)
T 3a79_B 304 LKSLMIEHVKNQVFLFSKE-ALYSVFAEMNIKMLSISDTP-FIHM----VCPPSPSSFTFLNFTQNVFT-DSVFQG-CST 375 (562)
T ss_dssp CCEEEEEEEEECCCSSCHH-HHHHHHHTCCCSEEEEESSC-CCCC----CCCSSCCCCCEEECCSSCCC-TTTTTT-CCS
T ss_pred chheehhhcccceeecChh-hhhhhhccCcceEEEccCCC-cccc----cCccCCCCceEEECCCCccc-cchhhh-hcc
Confidence 5555555443221 11000 00011112568888888874 3222 11145788888888887533 334433 267
Q ss_pred hccCcEEEEeccCCceeeeeccccccccccccccCCcCEEecCCCccccccccCCCccccccCccEEEeecCcccccccc
Q 003090 614 FQNLQRLRVYSCGLLVSVFEIERVNIAKEETELFSSLEKLTLWDLPRMTDIWKGDTQFVSLHNLKKVRVEECDELRQVFP 693 (848)
Q Consensus 614 l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~l~~l~~L~~L~i~~C~~L~~~~p 693 (848)
+++|++|++++|. ++.++.. ...+..+++|++|+++++.--..++... +..+++|+.|++++|. ++...|
T Consensus 376 l~~L~~L~L~~N~-l~~~~~~------~~~~~~l~~L~~L~l~~N~l~~~~~~~~--~~~l~~L~~L~l~~n~-l~~~~~ 445 (562)
T 3a79_B 376 LKRLQTLILQRNG-LKNFFKV------ALMTKNMSSLETLDVSLNSLNSHAYDRT--CAWAESILVLNLSSNM-LTGSVF 445 (562)
T ss_dssp CSSCCEEECCSSC-CCBTTHH------HHTTTTCTTCCEEECTTSCCBSCCSSCC--CCCCTTCCEEECCSSC-CCGGGG
T ss_pred cCCCCEEECCCCC-cCCcccc------hhhhcCCCCCCEEECCCCcCCCccChhh--hcCcccCCEEECCCCC-CCcchh
Confidence 7888888888863 4433210 0335678888888888875333355432 5667888888888874 332222
Q ss_pred CccccccccceeeeccccccceeeeecCCCCCCCCCCCCccEEEEecCCCCceecccchhhccccccEEEEeccccccee
Q 003090 694 ANFGKKAAAEEMVLYRKRRDQIHIHATTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVRSCPTLQEI 773 (848)
Q Consensus 694 ~~~~~~~~~~~l~l~~l~~~~l~i~~c~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~L~~l 773 (848)
..+ . ++|+.|++++| +++.+|. .+.++++|++|+++++. ++.+
T Consensus 446 ~~l-------------------------------~--~~L~~L~L~~N-~l~~ip~--~~~~l~~L~~L~L~~N~-l~~l 488 (562)
T 3a79_B 446 RCL-------------------------------P--PKVKVLDLHNN-RIMSIPK--DVTHLQALQELNVASNQ-LKSV 488 (562)
T ss_dssp SSC-------------------------------C--TTCSEEECCSS-CCCCCCT--TTTSSCCCSEEECCSSC-CCCC
T ss_pred hhh-------------------------------c--CcCCEEECCCC-cCcccCh--hhcCCCCCCEEECCCCC-CCCC
Confidence 111 1 56777777775 6676653 23377777777777764 4444
Q ss_pred ecCCcccccccCCCccceecccccccccccccccccc
Q 003090 774 IMDDEGEVGLQGASTKKITFPSLFGIKLCDLDSLACF 810 (848)
Q Consensus 774 ~~~~~~~~~l~~~~~~~~~~~sL~~L~i~~cp~L~~~ 810 (848)
+.. .+.. +++|+.|++.++| +...
T Consensus 489 ~~~-----~~~~-------l~~L~~L~l~~N~-~~c~ 512 (562)
T 3a79_B 489 PDG-----VFDR-------LTSLQYIWLHDNP-WDCT 512 (562)
T ss_dssp CTT-----STTT-------CTTCCCEECCSCC-BCCC
T ss_pred CHH-----HHhc-------CCCCCEEEecCCC-cCCC
Confidence 221 1111 5777777777766 4443
No 22
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.94 E-value=4.6e-26 Score=259.63 Aligned_cols=446 Identities=15% Similarity=0.159 Sum_probs=273.1
Q ss_pred ceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCCCCchhhhcccCcEEEccCccccCCc
Q 003090 258 QALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLPSSLSFLINLRTLRLHDRRIQGDL 337 (848)
Q Consensus 258 ~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~~ 337 (848)
++|++++|.+..+|..++ ++|++|++++ +.+... .|..+..+++|++|++++|.+....
T Consensus 3 ~~l~ls~n~l~~ip~~~~---~~L~~L~Ls~--------------n~i~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~ 61 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS---QKTTILNISQ--------------NYISEL----WTSDILSLSKLRILIISHNRIQYLD 61 (520)
T ss_dssp CEEECTTSCCSSCCCSCC---TTCSEEECCS--------------SCCCCC----CHHHHTTCTTCCEEECCSSCCCEEE
T ss_pred ceEecCCCCccccccccc---ccccEEECCC--------------Cccccc----ChhhccccccccEEecCCCccCCcC
Confidence 578999999999998653 8999999999 888883 4478999999999999999888774
Q ss_pred -hhhccccCCCEEEccCCCCcccChhhccCCcccEEeccCCcccc-ccChhhhhccccccEEeccccccccccccccccc
Q 003090 338 -SLIGELSGLEILDLSESDVSEIPVSFGRLSHLRLLDLTGCYILE-LIPRGVLSRLRKLEELYMSHSFRHWQFESESEED 415 (848)
Q Consensus 338 -~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~-~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 415 (848)
..++++++|++|++++|.++.+|.. .+++|++|++++|...+ .+|.. ++++++|++|++++|.+..
T Consensus 62 ~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~-~~~l~~L~~L~L~~n~l~~--------- 129 (520)
T 2z7x_B 62 ISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLSFNAFDALPICKE-FGNMSQLKFLGLSTTHLEK--------- 129 (520)
T ss_dssp GGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEECCSSCCSSCCCCGG-GGGCTTCCEEEEEESSCCG---------
T ss_pred hHHhhcccCCCEEecCCCceeecCcc--ccCCccEEeccCCccccccchhh-hccCCcceEEEecCcccch---------
Confidence 7899999999999999999999987 89999999999998766 46777 8999999999999998754
Q ss_pred cCcccchhhhcccCCC--cEEEeeccCC--C-CCCCCCccCCC--CeEEEEeCCCCCCCCCcccceEEeccccccccccc
Q 003090 416 SSSNAKFIELGALSRL--TSLHIHIPEG--K-IMPSDMSFQNL--TSFSIAIGDLEERPLSDFIGLFLQKFKKRCSRAMG 488 (848)
Q Consensus 416 ~~~~~~~~~L~~l~~L--~~L~l~~~~~--~-~~~~~~~~~~L--~~L~l~~~~~~~~~~~~l~~l~l~~~~~~c~~~~~ 488 (848)
..+..+++| +.|++++|.+ . ..|..+ .+| +.+.+......... ......+.
T Consensus 130 -------~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l--~~l~~~~l~l~l~~n~~~~--~~~~~~~~----------- 187 (520)
T 2z7x_B 130 -------SSVLPIAHLNISKVLLVLGETYGEKEDPEGL--QDFNTESLHIVFPTNKEFH--FILDVSVK----------- 187 (520)
T ss_dssp -------GGGGGGTTSCEEEEEEEECTTTTSSCCTTTT--TTCCEEEEEEECCSSSCCC--CCCCCCCT-----------
T ss_pred -------hhccccccceeeEEEeecccccccccccccc--cccccceEEEEeccCcchh--hhhhhhhh-----------
Confidence 245666777 9999999987 3 333333 333 34444322211000 00000000
Q ss_pred CccccchhhHHHHHHHHHhhcceeeecccc------ccccccccccccCCCCCcEEEEecCCCceeecccccccccccCC
Q 003090 489 LSQDMRISALHSWIKNLLLRSEILALAEVN------YFENIVSDLANDGFNELMFLVIFRCNEMKYLLNSLERTLRVTLH 562 (848)
Q Consensus 489 l~~~~~l~~l~~~~~~~~~~L~~L~l~~~~------~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~p 562 (848)
.+++|+.|+++++. ........+ ..+++|+.|++.++....... .........+
T Consensus 188 ----------------~l~~L~~L~l~~n~~~~~~~~~~~~~~~l--~~l~~L~~L~l~~~~l~~~~~--~~~~~~~~~~ 247 (520)
T 2z7x_B 188 ----------------TVANLELSNIKCVLEDNKCSYFLSILAKL--QTNPKLSNLTLNNIETTWNSF--IRILQLVWHT 247 (520)
T ss_dssp ----------------TCSEEEECCEEECCSTTTTHHHHHHHHGG--GGCTTCCEEEEEEEEEEHHHH--HHHHHHHHTS
T ss_pred ----------------cccceeeccccccccccccceeecchhhh--ccccchhhccccccccCHHHH--HHHHHHhhhC
Confidence 02455566665543 011111122 356777777777653211000 0001111245
Q ss_pred CccEEecccccccc-cccccccc--cccCCCcceEEEecCchhhHhhhHHHHHhh---ccCcEEEEeccCCceeeeeccc
Q 003090 563 KLEWLFIRENQNFV-EICHGQLP--AGCLSNVKRSDVVDCGSILKILLSHLVQSF---QNLQRLRVYSCGLLVSVFEIER 636 (848)
Q Consensus 563 ~L~~L~l~~~~~L~-~~~~~~~~--~~~l~~L~~L~l~~c~~l~~~l~~~~~~~l---~~L~~L~l~~c~~l~~~~~~~~ 636 (848)
+|++|+++++. +. .+....+. .+.+++|+.+++.++.. .+|......+ ++|+.|++++|.-. ..+
T Consensus 248 ~L~~L~l~~n~-l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~---~~p~~~~~~~~~~~~L~~L~l~~n~l~-~~~---- 318 (520)
T 2z7x_B 248 TVWYFSISNVK-LQGQLDFRDFDYSGTSLKALSIHQVVSDVF---GFPQSYIYEIFSNMNIKNFTVSGTRMV-HML---- 318 (520)
T ss_dssp SCSEEEEEEEE-EESCCCCCCCCCCSCCCCEEEEEEEEECCC---CSCTHHHHHHHHTCCCSEEEEESSCCC-CCC----
T ss_pred cccEEEeeccc-ccCccccchhhcccccCceeEeccccccce---ecchhhhhcccccCceeEEEcCCCccc-ccc----
Confidence 77777777764 22 21110000 03466677777766542 3442222333 45777777776532 111
Q ss_pred cccccccccccCCcCEEecCCCccccccccCCCccccccCccEEEeecCcccccc--ccCccccccccceeeeccccccc
Q 003090 637 VNIAKEETELFSSLEKLTLWDLPRMTDIWKGDTQFVSLHNLKKVRVEECDELRQV--FPANFGKKAAAEEMVLYRKRRDQ 714 (848)
Q Consensus 637 ~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~l~~l~~L~~L~i~~C~~L~~~--~p~~~~~~~~~~~l~l~~l~~~~ 714 (848)
....+++|++|+++++.--..++.. +..+++|+.|++++|. ++.+ +|..+.. +++| +.
T Consensus 319 ------~~~~l~~L~~L~Ls~n~l~~~~~~~---~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~--------l~~L--~~ 378 (520)
T 2z7x_B 319 ------CPSKISPFLHLDFSNNLLTDTVFEN---CGHLTELETLILQMNQ-LKELSKIAEMTTQ--------MKSL--QQ 378 (520)
T ss_dssp ------CCSSCCCCCEEECCSSCCCTTTTTT---CCCCSSCCEEECCSSC-CCBHHHHHHHHTT--------CTTC--CE
T ss_pred ------chhhCCcccEEEeECCccChhhhhh---hccCCCCCEEEccCCc-cCccccchHHHhh--------CCCC--CE
Confidence 1146677777777776432223322 4567777777777764 3321 1221211 2333 44
Q ss_pred eeeeecC--C-CCC-CCCCCCCccEEEEecCCCCceecccchhhcc-ccccEEEEecccccceeecCCcccccccCCCcc
Q 003090 715 IHIHATT--S-TSS-PTPSLGNLVSITIRGCGKLRNLFTTSMVKSL-VRLESLEVRSCPTLQEIIMDDEGEVGLQGASTK 789 (848)
Q Consensus 715 l~i~~c~--~-~~~-~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l-~~L~~L~i~~C~~L~~l~~~~~~~~~l~~~~~~ 789 (848)
+++.+|. . .+. .+..+++|++|++++|.--..+| ..+ ++|++|++++| .+..++. .
T Consensus 379 L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~-----~~l~~~L~~L~Ls~N-~l~~ip~--~----------- 439 (520)
T 2z7x_B 379 LDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIF-----RCLPPRIKVLDLHSN-KIKSIPK--Q----------- 439 (520)
T ss_dssp EECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGG-----GSCCTTCCEEECCSS-CCCCCCG--G-----------
T ss_pred EECCCCcCCcccccchhccCccCCEEECcCCCCCcchh-----hhhcccCCEEECCCC-cccccch--h-----------
Confidence 4444441 1 222 35678999999999975323332 223 79999999999 4555522 1
Q ss_pred ceecccccccccccccccccccCC-Cc---ccccccccccee
Q 003090 790 KITFPSLFGIKLCDLDSLACFCST-AH---HFNFVFHLGQKI 827 (848)
Q Consensus 790 ~~~~~sL~~L~i~~cp~L~~~~~~-~~---~~~~~~i~~~~~ 827 (848)
...+++|++|++++|. ++.++.. +. .+..+.+.+-.+
T Consensus 440 ~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 440 VVKLEALQELNVASNQ-LKSVPDGIFDRLTSLQKIWLHTNPW 480 (520)
T ss_dssp GGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred hhcCCCCCEEECCCCc-CCccCHHHhccCCcccEEECcCCCC
Confidence 1127999999999985 7776654 33 344455555444
No 23
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.93 E-value=5.4e-25 Score=257.92 Aligned_cols=473 Identities=19% Similarity=0.162 Sum_probs=261.7
Q ss_pred chhHHHHHHHhccCCCceeeecCCCcccCCc-c-cccccceeecccCcCcccChHHHccCCceeEEEccCcccccccccC
Q 003090 221 SITKIQYEIAGWLDLTGISLMFNDIHEVPDE-L-ECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRF 298 (848)
Q Consensus 221 ~~~~l~~~i~~~~~l~~l~l~~n~l~~lp~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~ 298 (848)
++..|+..+.. .++.|+|++|.|+.+|+. + ++++|++|+|++|.+..+++..|.++++|++|+|++
T Consensus 42 ~l~~vP~~lp~--~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~---------- 109 (635)
T 4g8a_A 42 NFYKIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG---------- 109 (635)
T ss_dssp CCSSCCSSSCT--TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT----------
T ss_pred CcCccCCCCCc--CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccC----------
Confidence 45556655543 468899999999999864 3 899999999999999999988889999999999999
Q ss_pred CCCCCCCCCCCCCCCC-chhhhcccCcEEEccCccccCCc-hhhccccCCCEEEccCCCCc--ccChhhccCCcccEEec
Q 003090 299 PFLFPPLPSSPLFLLP-SSLSFLINLRTLRLHDRRIQGDL-SLIGELSGLEILDLSESDVS--EIPVSFGRLSHLRLLDL 374 (848)
Q Consensus 299 ~~~~~~l~~~~~~~lp-~~~~~l~~L~~L~L~~~~~~~~~-~~i~~l~~L~~L~l~~~~l~--~lp~~i~~L~~L~~L~l 374 (848)
|.++. +| ..|.++++|++|++++|.+...+ ..++++++|++|++++|.++ .+|..++.+++|++|++
T Consensus 110 ----N~l~~-----l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L 180 (635)
T 4g8a_A 110 ----NPIQS-----LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 180 (635)
T ss_dssp ----CCCCE-----ECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEEC
T ss_pred ----CcCCC-----CCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcc
Confidence 88887 66 45899999999999999888776 46899999999999999887 46788899999999999
Q ss_pred cCCccccccChhhhhcccccc----EEecccccccccccccccc-----------ccCcccchhhhcccCCCcEEEee--
Q 003090 375 TGCYILELIPRGVLSRLRKLE----ELYMSHSFRHWQFESESEE-----------DSSSNAKFIELGALSRLTSLHIH-- 437 (848)
Q Consensus 375 ~~~~~~~~~p~~~l~~l~~L~----~L~l~~~~~~~~~~~~~~~-----------~~~~~~~~~~L~~l~~L~~L~l~-- 437 (848)
++|...+..|.. +..+.+++ .++++.|.+....++.... ..........+..+..++...+.
T Consensus 181 ~~N~l~~~~~~~-l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~ 259 (635)
T 4g8a_A 181 SSNKIQSIYCTD-LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLG 259 (635)
T ss_dssp CSSCCCEECGGG-GHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEE
T ss_pred cCcccccccccc-ccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccc
Confidence 998765544444 66665544 4556665554322110000 00000111223334444433332
Q ss_pred ----------------------------ccCCC----CCCCCC-ccCCCCeEEEEeCCC----CCCCCCcccceEEeccc
Q 003090 438 ----------------------------IPEGK----IMPSDM-SFQNLTSFSIAIGDL----EERPLSDFIGLFLQKFK 480 (848)
Q Consensus 438 ----------------------------~~~~~----~~~~~~-~~~~L~~L~l~~~~~----~~~~~~~l~~l~l~~~~ 480 (848)
.+... ...... ...+++.+.+..... .......++.+.+....
T Consensus 260 ~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 339 (635)
T 4g8a_A 260 EFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCK 339 (635)
T ss_dssp CCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCE
T ss_pred ccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhccccc
Confidence 11111 011111 344566665543322 11122233444443321
Q ss_pred ccccccccCccccchhhHHHHHHHHHhhcceeeeccccccccccccccccCCCCCcEEEEecCCCceeeccccccccccc
Q 003090 481 KRCSRAMGLSQDMRISALHSWIKNLLLRSEILALAEVNYFENIVSDLANDGFNELMFLVIFRCNEMKYLLNSLERTLRVT 560 (848)
Q Consensus 481 ~~c~~~~~l~~~~~l~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~ 560 (848)
...+.. ..++.|+.+.+.++..... . ....+++|+.|.++++...... ........
T Consensus 340 -----~~~~~~------------~~l~~L~~l~l~~n~~~~~-~---~~~~l~~L~~L~ls~n~l~~~~---~~~~~~~~ 395 (635)
T 4g8a_A 340 -----FGQFPT------------LKLKSLKRLTFTSNKGGNA-F---SEVDLPSLEFLDLSRNGLSFKG---CCSQSDFG 395 (635)
T ss_dssp -----ESSCCC------------CBCTTCCEEEEESCCSCCB-C---CCCBCTTCCEEECCSSCCBEEE---ECCHHHHS
T ss_pred -----ccCcCc------------ccchhhhhcccccccCCCC-c---ccccccccccchhhcccccccc---ccccchhh
Confidence 000000 0024555555554443221 1 1124566777766655432110 00012223
Q ss_pred CCCccEEecccccccccccccccccccCCCcceEEEecCchhhHhhhHHHHHhhccCcEEEEeccCCceeeeeccccccc
Q 003090 561 LHKLEWLFIRENQNFVEICHGQLPAGCLSNVKRSDVVDCGSILKILLSHLVQSFQNLQRLRVYSCGLLVSVFEIERVNIA 640 (848)
Q Consensus 561 ~p~L~~L~l~~~~~L~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~ 640 (848)
.++|+.|++..+... .. ......+++|+.+++..+... ...+......+++|+.++++++.--...+
T Consensus 396 ~~~L~~L~~~~~~~~-~~---~~~~~~l~~L~~l~l~~~~~~-~~~~~~~~~~l~~l~~l~ls~n~l~~~~~-------- 462 (635)
T 4g8a_A 396 TISLKYLDLSFNGVI-TM---SSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFN-------- 462 (635)
T ss_dssp CSCCCEEECCSCSEE-EE---CSCCTTCTTCCEEECTTSEEE-STTSSCTTTTCTTCCEEECTTSCCEECCT--------
T ss_pred hhhhhhhhccccccc-cc---cccccccccccchhhhhcccc-ccccccccccccccccccccccccccccc--------
Confidence 455666665554311 11 011224555555555554433 33332222445555555555543222111
Q ss_pred cccccccCCcCEEecCCCccccccccCCCccccccCccEEEeecCccccccccCccccccccceeeeccccccceeeeec
Q 003090 641 KEETELFSSLEKLTLWDLPRMTDIWKGDTQFVSLHNLKKVRVEECDELRQVFPANFGKKAAAEEMVLYRKRRDQIHIHAT 720 (848)
Q Consensus 641 ~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~l~~l~~L~~L~i~~C~~L~~~~p~~~~~~~~~~~l~l~~l~~~~l~i~~c 720 (848)
..+..+++|+.|+++++.....+.... +..+++|+.|++++| +++.+.|..+.. +++| +.+.+.++
T Consensus 463 -~~~~~~~~L~~L~Ls~N~~~~~~~~~~--~~~l~~L~~L~Ls~N-~L~~l~~~~f~~--------l~~L--~~L~Ls~N 528 (635)
T 4g8a_A 463 -GIFNGLSSLEVLKMAGNSFQENFLPDI--FTELRNLTFLDLSQC-QLEQLSPTAFNS--------LSSL--QVLNMSHN 528 (635)
T ss_dssp -TTTTTCTTCCEEECTTCEEGGGEECSC--CTTCTTCCEEECTTS-CCCEECTTTTTT--------CTTC--CEEECTTS
T ss_pred -cccccchhhhhhhhhhcccccccCchh--hhhccccCEEECCCC-ccCCcChHHHcC--------CCCC--CEEECCCC
Confidence 233445555555555554444332221 344555555555555 344443333322 1222 22222222
Q ss_pred --CCC-CCCCCCCCCccEEEEecCCCCceecccchhhcc-ccccEEEEeccc
Q 003090 721 --TST-SSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSL-VRLESLEVRSCP 768 (848)
Q Consensus 721 --~~~-~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l-~~L~~L~i~~C~ 768 (848)
... +..+..+++|+.|++++ ++|+.+++ ..+.++ ++|++|+++++|
T Consensus 529 ~l~~l~~~~~~~l~~L~~L~Ls~-N~l~~~~~-~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 529 NFFSLDTFPYKCLNSLQVLDYSL-NHIMTSKK-QELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp CCCBCCCGGGTTCTTCCEEECTT-SCCCBCCS-SCTTCCCTTCCEEECTTCC
T ss_pred cCCCCChhHHhCCCCCCEEECCC-CcCCCCCH-HHHHhhhCcCCEEEeeCCC
Confidence 011 23456789999999999 57888866 455666 789999998755
No 24
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=9e-25 Score=244.69 Aligned_cols=342 Identities=18% Similarity=0.215 Sum_probs=192.7
Q ss_pred ccccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCCCCchhhhcccCcEEEccCccc
Q 003090 254 CPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLPSSLSFLINLRTLRLHDRRI 333 (848)
Q Consensus 254 ~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~ 333 (848)
+++++.|+++++.+..+|. +..+++|++|++++ +.+.. +|. +..+++|++|++++|.+
T Consensus 45 l~~l~~L~l~~~~i~~l~~--~~~l~~L~~L~Ls~--------------n~l~~-----~~~-~~~l~~L~~L~l~~n~l 102 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSN--------------NQLTD-----ITP-LKNLTKLVDILMNNNQI 102 (466)
T ss_dssp HHTCCEEECCSSCCCCCTT--GGGCTTCCEEECCS--------------SCCCC-----CGG-GTTCTTCCEEECCSSCC
T ss_pred hccccEEecCCCCCccCcc--hhhhcCCCEEECCC--------------CccCC-----chh-hhccccCCEEECCCCcc
Confidence 4566666666666666654 45666667777666 55655 444 66666677777766655
Q ss_pred cCCchhhccccCCCEEEccCCCCcccChhhccCCcccEEeccCCccccccChhhhhccccccEEeccccccccccccccc
Q 003090 334 QGDLSLIGELSGLEILDLSESDVSEIPVSFGRLSHLRLLDLTGCYILELIPRGVLSRLRKLEELYMSHSFRHWQFESESE 413 (848)
Q Consensus 334 ~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 413 (848)
...++ ++++++|++|++++|.++.+|. +.++++|++|++++|... .++. ++++++|++|++.++ +.
T Consensus 103 ~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~~~-~~-------- 168 (466)
T 1o6v_A 103 ADITP-LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTIS-DISA--LSGLTSLQQLSFGNQ-VT-------- 168 (466)
T ss_dssp CCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEEEC-CCGG--GTTCTTCSEEEEEES-CC--------
T ss_pred ccChh-hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEECCCCccC-CChh--hccCCcccEeecCCc-cc--------
Confidence 55444 6666677777776666666654 666667777777665433 3443 566666776666422 11
Q ss_pred cccCcccchhhhcccCCCcEEEeeccCCCCCCCCCccCCCCeEEEEeCCCCCCCCCcccceEEecccccccccccCcccc
Q 003090 414 EDSSSNAKFIELGALSRLTSLHIHIPEGKIMPSDMSFQNLTSFSIAIGDLEERPLSDFIGLFLQKFKKRCSRAMGLSQDM 493 (848)
Q Consensus 414 ~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~~~c~~~~~l~~~~ 493 (848)
....+.++++|+.|++++|.+..++....+++|+.|++.
T Consensus 169 -------~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~---------------------------------- 207 (466)
T 1o6v_A 169 -------DLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIAT---------------------------------- 207 (466)
T ss_dssp -------CCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECC----------------------------------
T ss_pred -------CchhhccCCCCCEEECcCCcCCCChhhccCCCCCEEEec----------------------------------
Confidence 112366666667777666665544321144444444443
Q ss_pred chhhHHHHHHHHHhhcceeeeccccccccccccccccCCCCCcEEEEecCCCceeecccccccccccCCCccEEeccccc
Q 003090 494 RISALHSWIKNLLLRSEILALAEVNYFENIVSDLANDGFNELMFLVIFRCNEMKYLLNSLERTLRVTLHKLEWLFIRENQ 573 (848)
Q Consensus 494 ~l~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~p~L~~L~l~~~~ 573 (848)
++..... .. ...+++|+.|++.+|. ++.+ .....+++|++|++++|.
T Consensus 208 ----------------------~n~l~~~-~~---~~~l~~L~~L~l~~n~-l~~~------~~l~~l~~L~~L~l~~n~ 254 (466)
T 1o6v_A 208 ----------------------NNQISDI-TP---LGILTNLDELSLNGNQ-LKDI------GTLASLTNLTDLDLANNQ 254 (466)
T ss_dssp ----------------------SSCCCCC-GG---GGGCTTCCEEECCSSC-CCCC------GGGGGCTTCSEEECCSSC
T ss_pred ----------------------CCccccc-cc---ccccCCCCEEECCCCC-cccc------hhhhcCCCCCEEECCCCc
Confidence 2211110 00 1234556666665553 2221 233445666666666653
Q ss_pred ccccccccccccccCCCcceEEEecCchhhHhhhHHHHHhhccCcEEEEeccCCceeeeeccccccccccccccCCcCEE
Q 003090 574 NFVEICHGQLPAGCLSNVKRSDVVDCGSILKILLSHLVQSFQNLQRLRVYSCGLLVSVFEIERVNIAKEETELFSSLEKL 653 (848)
Q Consensus 574 ~L~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L 653 (848)
+..+ .+...+++|+.|++++|. + ..+++ ...+++|++|++++|. ++.++ .+..+++|++|
T Consensus 255 -l~~~----~~~~~l~~L~~L~l~~n~-l-~~~~~--~~~l~~L~~L~L~~n~-l~~~~----------~~~~l~~L~~L 314 (466)
T 1o6v_A 255 -ISNL----APLSGLTKLTELKLGANQ-I-SNISP--LAGLTALTNLELNENQ-LEDIS----------PISNLKNLTYL 314 (466)
T ss_dssp -CCCC----GGGTTCTTCSEEECCSSC-C-CCCGG--GTTCTTCSEEECCSSC-CSCCG----------GGGGCTTCSEE
T ss_pred -cccc----hhhhcCCCCCEEECCCCc-c-Ccccc--ccCCCccCeEEcCCCc-ccCch----------hhcCCCCCCEE
Confidence 3222 223456666777666653 3 34444 2566777777777653 33331 24566777777
Q ss_pred ecCCCccccccccCCCccccccCccEEEeecCccccccccCccccccccceeeeccccccceeeeecCCCCCCCCCCCCc
Q 003090 654 TLWDLPRMTDIWKGDTQFVSLHNLKKVRVEECDELRQVFPANFGKKAAAEEMVLYRKRRDQIHIHATTSTSSPTPSLGNL 733 (848)
Q Consensus 654 ~l~~c~~L~~l~~~~~~l~~l~~L~~L~i~~C~~L~~~~p~~~~~~~~~~~l~l~~l~~~~l~i~~c~~~~~~~~~l~~L 733 (848)
++++|. +..++ ++..+++|+.|++++|. ++.+ ..+..+++|
T Consensus 315 ~L~~n~-l~~~~----~~~~l~~L~~L~l~~n~-l~~~---------------------------------~~l~~l~~L 355 (466)
T 1o6v_A 315 TLYFNN-ISDIS----PVSSLTKLQRLFFYNNK-VSDV---------------------------------SSLANLTNI 355 (466)
T ss_dssp ECCSSC-CSCCG----GGGGCTTCCEEECCSSC-CCCC---------------------------------GGGTTCTTC
T ss_pred ECcCCc-CCCch----hhccCccCCEeECCCCc-cCCc---------------------------------hhhccCCCC
Confidence 777763 33332 24567777777777762 3321 123456777
Q ss_pred cEEEEecCCCCceecccchhhccccccEEEEeccc
Q 003090 734 VSITIRGCGKLRNLFTTSMVKSLVRLESLEVRSCP 768 (848)
Q Consensus 734 ~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~ 768 (848)
+.|++++| .+..+++ +..+++|++|++++|+
T Consensus 356 ~~L~l~~n-~l~~~~~---~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 356 NWLSAGHN-QISDLTP---LANLTRITQLGLNDQA 386 (466)
T ss_dssp CEEECCSS-CCCBCGG---GTTCTTCCEEECCCEE
T ss_pred CEEeCCCC-ccCccch---hhcCCCCCEEeccCCc
Confidence 77887775 4555543 5677778888887775
No 25
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=1.1e-24 Score=244.01 Aligned_cols=340 Identities=20% Similarity=0.209 Sum_probs=260.8
Q ss_pred CCCceeeecCCCcccCCcccccccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCCC
Q 003090 234 DLTGISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLL 313 (848)
Q Consensus 234 ~l~~l~l~~n~l~~lp~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~l 313 (848)
.++.++++++.+..+|....+++|++|++++|.+..++. +.++++|++|++++ +.+.. +
T Consensus 47 ~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~--------------n~l~~-----~ 105 (466)
T 1o6v_A 47 QVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNN--------------NQIAD-----I 105 (466)
T ss_dssp TCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCS--------------SCCCC-----C
T ss_pred cccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchh--hhccccCCEEECCC--------------Ccccc-----C
Confidence 467899999999998875589999999999999888887 68999999999999 88887 6
Q ss_pred CchhhhcccCcEEEccCccccCCchhhccccCCCEEEccCCCCcccChhhccCCcccEEeccCCccccccChhhhhcccc
Q 003090 314 PSSLSFLINLRTLRLHDRRIQGDLSLIGELSGLEILDLSESDVSEIPVSFGRLSHLRLLDLTGCYILELIPRGVLSRLRK 393 (848)
Q Consensus 314 p~~~~~l~~L~~L~L~~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~l~~l~~ 393 (848)
+. +.++++|++|++++|.+...++ +.++++|++|++++|.+..+| .++.+++|++|++++ .. ..++. +.++++
T Consensus 106 ~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~-~~-~~~~~--~~~l~~ 178 (466)
T 1o6v_A 106 TP-LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGN-QV-TDLKP--LANLTT 178 (466)
T ss_dssp GG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEEE-SC-CCCGG--GTTCTT
T ss_pred hh-hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEECCCCccCCCh-hhccCCcccEeecCC-cc-cCchh--hccCCC
Confidence 65 9999999999999997666544 899999999999999998887 489999999999974 33 33444 789999
Q ss_pred ccEEeccccccccccccccccccCcccchhhhcccCCCcEEEeeccCCCCCCCCCccCCCCeEEEEeCCCCCCCCCcccc
Q 003090 394 LEELYMSHSFRHWQFESESEEDSSSNAKFIELGALSRLTSLHIHIPEGKIMPSDMSFQNLTSFSIAIGDLEERPLSDFIG 473 (848)
Q Consensus 394 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 473 (848)
|++|++++|.+.. +..+..+++|+.|++++|.+..++....+++|+.|++..+.... .+
T Consensus 179 L~~L~l~~n~l~~---------------~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~--~~---- 237 (466)
T 1o6v_A 179 LERLDISSNKVSD---------------ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD--IG---- 237 (466)
T ss_dssp CCEEECCSSCCCC---------------CGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCC--CG----
T ss_pred CCEEECcCCcCCC---------------ChhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCccc--ch----
Confidence 9999999998753 24588899999999999998877653378889999887544310 00
Q ss_pred eEEecccccccccccCccccchhhHHHHHHHHHhhcceeeeccccccccccccccccCCCCCcEEEEecCCCceeecccc
Q 003090 474 LFLQKFKKRCSRAMGLSQDMRISALHSWIKNLLLRSEILALAEVNYFENIVSDLANDGFNELMFLVIFRCNEMKYLLNSL 553 (848)
Q Consensus 474 l~l~~~~~~c~~~~~l~~~~~l~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~l~~~~ 553 (848)
. + ..+++|+.|+++++...... . ...+++|+.|++.+|.. ..+
T Consensus 238 ----~-----------------------l-~~l~~L~~L~l~~n~l~~~~-~---~~~l~~L~~L~l~~n~l-~~~---- 280 (466)
T 1o6v_A 238 ----T-----------------------L-ASLTNLTDLDLANNQISNLA-P---LSGLTKLTELKLGANQI-SNI---- 280 (466)
T ss_dssp ----G-----------------------G-GGCTTCSEEECCSSCCCCCG-G---GTTCTTCSEEECCSSCC-CCC----
T ss_pred ----h-----------------------h-hcCCCCCEEECCCCccccch-h---hhcCCCCCEEECCCCcc-Ccc----
Confidence 0 0 01478888888887654322 1 35778999999988853 322
Q ss_pred cccccccCCCccEEecccccccccccccccccccCCCcceEEEecCchhhHhhhHHHHHhhccCcEEEEeccCCceeeee
Q 003090 554 ERTLRVTLHKLEWLFIRENQNFVEICHGQLPAGCLSNVKRSDVVDCGSILKILLSHLVQSFQNLQRLRVYSCGLLVSVFE 633 (848)
Q Consensus 554 ~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~ 633 (848)
.....+++|++|+++++. ++.+ .+.+.+++|+.|++++|. + ..+++ ...+++|++|++++| .++.+
T Consensus 281 --~~~~~l~~L~~L~L~~n~-l~~~----~~~~~l~~L~~L~L~~n~-l-~~~~~--~~~l~~L~~L~l~~n-~l~~~-- 346 (466)
T 1o6v_A 281 --SPLAGLTALTNLELNENQ-LEDI----SPISNLKNLTYLTLYFNN-I-SDISP--VSSLTKLQRLFFYNN-KVSDV-- 346 (466)
T ss_dssp --GGGTTCTTCSEEECCSSC-CSCC----GGGGGCTTCSEEECCSSC-C-SCCGG--GGGCTTCCEEECCSS-CCCCC--
T ss_pred --ccccCCCccCeEEcCCCc-ccCc----hhhcCCCCCCEEECcCCc-C-CCchh--hccCccCCEeECCCC-ccCCc--
Confidence 235678999999999884 5443 335578999999999885 4 45554 278899999999988 44444
Q ss_pred ccccccccccccccCCcCEEecCCCccccccccCCCccccccCccEEEeecCc
Q 003090 634 IERVNIAKEETELFSSLEKLTLWDLPRMTDIWKGDTQFVSLHNLKKVRVEECD 686 (848)
Q Consensus 634 ~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~l~~l~~L~~L~i~~C~ 686 (848)
..+..+++|+.|++++|. +..+. ++..+++|+.|++++|+
T Consensus 347 --------~~l~~l~~L~~L~l~~n~-l~~~~----~~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 347 --------SSLANLTNINWLSAGHNQ-ISDLT----PLANLTRITQLGLNDQA 386 (466)
T ss_dssp --------GGGTTCTTCCEEECCSSC-CCBCG----GGTTCTTCCEEECCCEE
T ss_pred --------hhhccCCCCCEEeCCCCc-cCccc----hhhcCCCCCEEeccCCc
Confidence 346688999999999885 44332 36778999999999875
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.93 E-value=1.1e-24 Score=243.85 Aligned_cols=365 Identities=15% Similarity=0.159 Sum_probs=258.0
Q ss_pred CceeeecCCCcccCCcccccccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCCC-C
Q 003090 236 TGISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLL-P 314 (848)
Q Consensus 236 ~~l~l~~n~l~~lp~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~l-p 314 (848)
+.++.+++.++.+|. + .++|++|++++|.+..+++..|.++++|++|++++ +.+... + |
T Consensus 13 ~~~~c~~~~l~~lp~-l-~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~--------------n~~~~~----i~~ 72 (455)
T 3v47_A 13 YNAICINRGLHQVPE-L-PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQ--------------QTPGLV----IRN 72 (455)
T ss_dssp TEEECCSSCCSSCCC-C-CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCC--------------CSTTCE----ECT
T ss_pred cccCcCCCCcccCCC-C-CCccCEEEecCCccCcCChhHhccCccccEEECcC--------------Ccccce----ECc
Confidence 346677788888887 3 37899999999988888666678899999999998 666532 3 5
Q ss_pred chhhhcccCcEEEccCccccCC-chhhccccCCCEEEccCCCCcc-cChh--hccCCcccEEeccCCccccccChhhhhc
Q 003090 315 SSLSFLINLRTLRLHDRRIQGD-LSLIGELSGLEILDLSESDVSE-IPVS--FGRLSHLRLLDLTGCYILELIPRGVLSR 390 (848)
Q Consensus 315 ~~~~~l~~L~~L~L~~~~~~~~-~~~i~~l~~L~~L~l~~~~l~~-lp~~--i~~L~~L~~L~l~~~~~~~~~p~~~l~~ 390 (848)
..+..+++|++|++++|.+... +..++++++|++|++++|.++. +|.. ++++++|++|++++|...+..|...+.+
T Consensus 73 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 152 (455)
T 3v47_A 73 NTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLN 152 (455)
T ss_dssp TTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGG
T ss_pred ccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCC
Confidence 6688899999999999987766 4678899999999999998884 4444 8889999999999987776667665788
Q ss_pred cccccEEeccccccccccccccccccCcccchhhhccc--CCCcEEEeeccCCCCCCCCC----------ccCCCCeEEE
Q 003090 391 LRKLEELYMSHSFRHWQFESESEEDSSSNAKFIELGAL--SRLTSLHIHIPEGKIMPSDM----------SFQNLTSFSI 458 (848)
Q Consensus 391 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~l--~~L~~L~l~~~~~~~~~~~~----------~~~~L~~L~l 458 (848)
+++|++|++++|.+... .+..+..+ .+|+.|+++++.+..++... .+++|+.|++
T Consensus 153 l~~L~~L~L~~n~l~~~-------------~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L 219 (455)
T 3v47_A 153 MRRFHVLDLTFNKVKSI-------------CEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDL 219 (455)
T ss_dssp CTTCCEEECTTCCBSCC-------------CTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEEC
T ss_pred CCcccEEeCCCCccccc-------------ChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEec
Confidence 99999999999887765 33344444 57888899888877665432 3356666666
Q ss_pred EeCCCCCCCCCcccceEEecccccccccccCccccchhhHHHHHHHH--Hhhcceeeeccccccccccc----------c
Q 003090 459 AIGDLEERPLSDFIGLFLQKFKKRCSRAMGLSQDMRISALHSWIKNL--LLRSEILALAEVNYFENIVS----------D 526 (848)
Q Consensus 459 ~~~~~~~~~~~~l~~l~l~~~~~~c~~~~~l~~~~~l~~l~~~~~~~--~~~L~~L~l~~~~~~~~~~~----------~ 526 (848)
..+.. ....+.++... .++|+.|.+.++........ .
T Consensus 220 s~n~l-------------------------------~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 268 (455)
T 3v47_A 220 SGNGF-------------------------------KESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFT 268 (455)
T ss_dssp TTSCC-------------------------------CHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTT
T ss_pred CCCcc-------------------------------cccchhhhhccccccceeeEeeccccccccccchhhhccCcccc
Confidence 53322 12344444333 26788888877643322110 1
Q ss_pred ccccCCCCCcEEEEecCCCceeecccccccccccCCCccEEecccccccccccccccccccCCCcceEEEecCchhhHhh
Q 003090 527 LANDGFNELMFLVIFRCNEMKYLLNSLERTLRVTLHKLEWLFIRENQNFVEICHGQLPAGCLSNVKRSDVVDCGSILKIL 606 (848)
Q Consensus 527 l~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~l 606 (848)
+..-..++|+.|++.++...... ......+++|++|+++++. ++.+.. ...+.+++|+.|++++|. + ..+
T Consensus 269 ~~~~~~~~L~~L~l~~n~l~~~~-----~~~~~~l~~L~~L~Ls~n~-l~~~~~--~~~~~l~~L~~L~Ls~N~-l-~~~ 338 (455)
T 3v47_A 269 FKGLEASGVKTCDLSKSKIFALL-----KSVFSHFTDLEQLTLAQNE-INKIDD--NAFWGLTHLLKLNLSQNF-L-GSI 338 (455)
T ss_dssp TGGGTTSCCCEEECCSSCCCEEC-----TTTTTTCTTCCEEECTTSC-CCEECT--TTTTTCTTCCEEECCSSC-C-CEE
T ss_pred cccccccCceEEEecCccccccc-----hhhcccCCCCCEEECCCCc-ccccCh--hHhcCcccCCEEECCCCc-c-CCc
Confidence 11113478999999988644321 1234568999999999884 444311 123468899999999874 5 555
Q ss_pred hHHHHHhhccCcEEEEeccCCceeeeeccccccccccccccCCcCEEecCCCccccccccCCCccccccCccEEEeecCc
Q 003090 607 LSHLVQSFQNLQRLRVYSCGLLVSVFEIERVNIAKEETELFSSLEKLTLWDLPRMTDIWKGDTQFVSLHNLKKVRVEECD 686 (848)
Q Consensus 607 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~l~~l~~L~~L~i~~C~ 686 (848)
++..+..+++|++|++++|.- +.++. ..+..+++|++|+++++ .++.++... +..+++|+.|++++++
T Consensus 339 ~~~~~~~l~~L~~L~Ls~N~l-~~~~~--------~~~~~l~~L~~L~L~~N-~l~~~~~~~--~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 339 DSRMFENLDKLEVLDLSYNHI-RALGD--------QSFLGLPNLKELALDTN-QLKSVPDGI--FDRLTSLQKIWLHTNP 406 (455)
T ss_dssp CGGGGTTCTTCCEEECCSSCC-CEECT--------TTTTTCTTCCEEECCSS-CCSCCCTTT--TTTCTTCCEEECCSSC
T ss_pred ChhHhcCcccCCEEECCCCcc-cccCh--------hhccccccccEEECCCC-ccccCCHhH--hccCCcccEEEccCCC
Confidence 444447889999999999854 44422 45778899999999986 577766543 5778999999999876
No 27
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.92 E-value=3.2e-24 Score=246.47 Aligned_cols=439 Identities=13% Similarity=0.117 Sum_probs=248.6
Q ss_pred cccccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCCCCchhhhcccCcEEEccCcc
Q 003090 253 ECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLPSSLSFLINLRTLRLHDRR 332 (848)
Q Consensus 253 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp~~~~~l~~L~~L~L~~~~ 332 (848)
.+...+++++++|.+..+|..+ .++|++|++++ +.+... .|..+.++++|++|++++|.
T Consensus 29 ~~~~~~~l~ls~~~L~~ip~~~---~~~L~~L~Ls~--------------N~i~~~----~~~~~~~l~~L~~L~Ls~N~ 87 (562)
T 3a79_B 29 SNELESMVDYSNRNLTHVPKDL---PPRTKALSLSQ--------------NSISEL----RMPDISFLSELRVLRLSHNR 87 (562)
T ss_dssp ----CCEEECTTSCCCSCCTTS---CTTCCEEECCS--------------SCCCCC----CGGGTTTCTTCCEEECCSCC
T ss_pred ccCCCcEEEcCCCCCccCCCCC---CCCcCEEECCC--------------CCcccc----ChhhhccCCCccEEECCCCC
Confidence 4555689999999999999865 38999999999 888883 44789999999999999998
Q ss_pred ccCCc-hhhccccCCCEEEccCCCCcccChhhccCCcccEEeccCCcccc-ccChhhhhccccccEEecccccccccccc
Q 003090 333 IQGDL-SLIGELSGLEILDLSESDVSEIPVSFGRLSHLRLLDLTGCYILE-LIPRGVLSRLRKLEELYMSHSFRHWQFES 410 (848)
Q Consensus 333 ~~~~~-~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~-~~p~~~l~~l~~L~~L~l~~~~~~~~~~~ 410 (848)
+.... ..++++++|++|++++|.++.+|.. .+++|++|++++|.... .+|.. ++++++|++|++++|.+...
T Consensus 88 l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~-~~~l~~L~~L~L~~n~l~~~--- 161 (562)
T 3a79_B 88 IRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKE-FGNLTKLTFLGLSAAKFRQL--- 161 (562)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGG-GGGCTTCCEEEEECSBCCTT---
T ss_pred CCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECCCCCccccCchHh-hcccCcccEEecCCCccccC---
Confidence 88764 7799999999999999999999987 89999999999987655 34456 89999999999999987642
Q ss_pred ccccccCcccchhhhcccCCCcEEEeeccCC--CCC-CCCC-ccCCCCeEEEEeCCCCCCCCCcccceEEeccccccccc
Q 003090 411 ESEEDSSSNAKFIELGALSRLTSLHIHIPEG--KIM-PSDM-SFQNLTSFSIAIGDLEERPLSDFIGLFLQKFKKRCSRA 486 (848)
Q Consensus 411 ~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~--~~~-~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~~~c~~~ 486 (848)
.+..+..+ +|+.|++++|.+ ... +..+ .+. .+.+.+......... .........
T Consensus 162 ----------~~~~l~~L-~L~~L~L~~n~l~~~~~~~~~l~~l~-~~~l~l~l~~n~~~~--~~~~~~~~~-------- 219 (562)
T 3a79_B 162 ----------DLLPVAHL-HLSCILLDLVSYHIKGGETESLQIPN-TTVLHLVFHPNSLFS--VQVNMSVNA-------- 219 (562)
T ss_dssp ----------TTGGGTTS-CEEEEEEEESSCCCCSSSCCEEEECC-EEEEEEEECSSSCCC--CCCEEEESS--------
T ss_pred ----------chhhhhhc-eeeEEEeecccccccccCcccccccC-cceEEEEecCccchh--hhhhhcccc--------
Confidence 23334444 449999999987 433 3332 221 134444322221000 000000100
Q ss_pred ccCccccchhhHHHHHHHHHhhcceeeecccc----ccccccccccccCCCCCcEEEEecCCCceeecccccccccccCC
Q 003090 487 MGLSQDMRISALHSWIKNLLLRSEILALAEVN----YFENIVSDLANDGFNELMFLVIFRCNEMKYLLNSLERTLRVTLH 562 (848)
Q Consensus 487 ~~l~~~~~l~~l~~~~~~~~~~L~~L~l~~~~----~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~p 562 (848)
+++|+.|+++++. ........+ ..+++|+.|.+.++..-..- -.........+
T Consensus 220 -------------------l~~L~~L~l~~n~~~~~~l~~~~~~l--~~l~~L~~L~L~~~~l~~~~--~~~~~~~~~~~ 276 (562)
T 3a79_B 220 -------------------LGHLQLSNIKLNDENCQRLMTFLSEL--TRGPTLLNVTLQHIETTWKC--SVKLFQFFWPR 276 (562)
T ss_dssp -------------------EEEEEEEEEECCSTTHHHHHHHHHHH--HSCSSCEEEEEEEEEECHHH--HHHHHHHHTTS
T ss_pred -------------------cceEEEecccccccccchHHHHHHHH--hccCcceEEEecCCcCcHHH--HHHHHHhhhcc
Confidence 2344455444431 111111111 23455666665544211000 00000111224
Q ss_pred CccEEeccccccccccccccccccc----CCCcceEEEecCchhhHhhhHHHHHhh---ccCcEEEEeccCCceeeeecc
Q 003090 563 KLEWLFIRENQNFVEICHGQLPAGC----LSNVKRSDVVDCGSILKILLSHLVQSF---QNLQRLRVYSCGLLVSVFEIE 635 (848)
Q Consensus 563 ~L~~L~l~~~~~L~~~~~~~~~~~~----l~~L~~L~l~~c~~l~~~l~~~~~~~l---~~L~~L~l~~c~~l~~~~~~~ 635 (848)
+|++|+++++. +. +.+|... .++|+.|.+.++..-.-.+|......+ .+|++|++++|.-. .+
T Consensus 277 ~L~~L~l~~n~-l~----~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~-~~---- 346 (562)
T 3a79_B 277 PVEYLNIYNLT-IT----ERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFI-HM---- 346 (562)
T ss_dssp SEEEEEEEEEE-EC----SCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCC-CC----
T ss_pred cccEEEEeccE-ee----ccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcc-cc----
Confidence 66666666663 21 1122111 134444443332211002222111111 45666666665421 11
Q ss_pred ccccccccccccCCcCEEecCCCccccccccCCCccccccCccEEEeecCcccccc--ccCccccccccceeeecccccc
Q 003090 636 RVNIAKEETELFSSLEKLTLWDLPRMTDIWKGDTQFVSLHNLKKVRVEECDELRQV--FPANFGKKAAAEEMVLYRKRRD 713 (848)
Q Consensus 636 ~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~l~~l~~L~~L~i~~C~~L~~~--~p~~~~~~~~~~~l~l~~l~~~ 713 (848)
.....+++|++|+++++.--..++. .+..+++|+.|+++++ +++.+ .|..+.. +.+| +
T Consensus 347 ------~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~--------l~~L--~ 406 (562)
T 3a79_B 347 ------VCPPSPSSFTFLNFTQNVFTDSVFQ---GCSTLKRLQTLILQRN-GLKNFFKVALMTKN--------MSSL--E 406 (562)
T ss_dssp ------CCCSSCCCCCEEECCSSCCCTTTTT---TCCSCSSCCEEECCSS-CCCBTTHHHHTTTT--------CTTC--C
T ss_pred ------cCccCCCCceEEECCCCccccchhh---hhcccCCCCEEECCCC-CcCCcccchhhhcC--------CCCC--C
Confidence 0113556666666666532222222 1455666666666664 33332 1111111 2222 3
Q ss_pred ceeeeecC--C-CCC-CCCCCCCccEEEEecCCCCceecccchhhcc-ccccEEEEecccccceeecCCcccccccCCCc
Q 003090 714 QIHIHATT--S-TSS-PTPSLGNLVSITIRGCGKLRNLFTTSMVKSL-VRLESLEVRSCPTLQEIIMDDEGEVGLQGAST 788 (848)
Q Consensus 714 ~l~i~~c~--~-~~~-~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l-~~L~~L~i~~C~~L~~l~~~~~~~~~l~~~~~ 788 (848)
.+++.++. . .+. .+..+++|+.|++++|. ++.. ....+ ++|++|++++| .++.++. . +
T Consensus 407 ~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~----~~~~l~~~L~~L~L~~N-~l~~ip~--~----~----- 469 (562)
T 3a79_B 407 TLDVSLNSLNSHAYDRTCAWAESILVLNLSSNM-LTGS----VFRCLPPKVKVLDLHNN-RIMSIPK--D----V----- 469 (562)
T ss_dssp EEECTTSCCBSCCSSCCCCCCTTCCEEECCSSC-CCGG----GGSSCCTTCSEEECCSS-CCCCCCT--T----T-----
T ss_pred EEECCCCcCCCccChhhhcCcccCCEEECCCCC-CCcc----hhhhhcCcCCEEECCCC-cCcccCh--h----h-----
Confidence 33333331 1 222 35678999999999975 5432 12334 69999999999 5766632 1 1
Q ss_pred cceecccccccccccccccccccCC
Q 003090 789 KKITFPSLFGIKLCDLDSLACFCST 813 (848)
Q Consensus 789 ~~~~~~sL~~L~i~~cp~L~~~~~~ 813 (848)
..+++|++|+++++. ++.++..
T Consensus 470 --~~l~~L~~L~L~~N~-l~~l~~~ 491 (562)
T 3a79_B 470 --THLQALQELNVASNQ-LKSVPDG 491 (562)
T ss_dssp --TSSCCCSEEECCSSC-CCCCCTT
T ss_pred --cCCCCCCEEECCCCC-CCCCCHH
Confidence 127899999998875 6666554
No 28
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.92 E-value=1.3e-23 Score=226.10 Aligned_cols=173 Identities=22% Similarity=0.295 Sum_probs=124.4
Q ss_pred cccCCcccccccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCCCCchhhhcccCcE
Q 003090 246 HEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLPSSLSFLINLRT 325 (848)
Q Consensus 246 ~~lp~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp~~~~~l~~L~~ 325 (848)
..++....+++|++|+++++.+..++. +..+++|++|++++ +.+.. +|. +..+++|++
T Consensus 35 ~~~~~~~~l~~L~~L~l~~~~i~~~~~--~~~~~~L~~L~l~~--------------n~i~~-----~~~-~~~l~~L~~ 92 (347)
T 4fmz_A 35 TDVVTQEELESITKLVVAGEKVASIQG--IEYLTNLEYLNLNG--------------NQITD-----ISP-LSNLVKLTN 92 (347)
T ss_dssp TSEECHHHHTTCSEEECCSSCCCCCTT--GGGCTTCCEEECCS--------------SCCCC-----CGG-GTTCTTCCE
T ss_pred CCcccchhcccccEEEEeCCccccchh--hhhcCCccEEEccC--------------Ccccc-----chh-hhcCCcCCE
Confidence 333333366778888888887777765 56788888888888 66766 555 778888888
Q ss_pred EEccCccccCCchhhccccCCCEEEccCCCCcccChhhccCCcccEEeccCCccccccChhhhhccccccEEeccccccc
Q 003090 326 LRLHDRRIQGDLSLIGELSGLEILDLSESDVSEIPVSFGRLSHLRLLDLTGCYILELIPRGVLSRLRKLEELYMSHSFRH 405 (848)
Q Consensus 326 L~L~~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~ 405 (848)
|++++|.+.. ++.+.++++|++|++++|.+..+|. +..+++|++|++++|.....++. +..+++|++|++++|.+.
T Consensus 93 L~L~~n~i~~-~~~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~ 168 (347)
T 4fmz_A 93 LYIGTNKITD-ISALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVK 168 (347)
T ss_dssp EECCSSCCCC-CGGGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred EEccCCcccC-chHHcCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcC
Confidence 8888885544 4567888888888888888887765 77888888888888766665554 678888888888887765
Q ss_pred cccccccccccCcccchhhhcccCCCcEEEeeccCCCCCCCCCccCCCCeEEEE
Q 003090 406 WQFESESEEDSSSNAKFIELGALSRLTSLHIHIPEGKIMPSDMSFQNLTSFSIA 459 (848)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~ 459 (848)
.. ..+..+++|+.|++++|.+..++....+++|+.|.+.
T Consensus 169 ~~---------------~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~ 207 (347)
T 4fmz_A 169 DV---------------TPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAY 207 (347)
T ss_dssp CC---------------GGGGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECC
T ss_pred Cc---------------hhhccCCCCCEEEccCCcccccccccCCCccceeecc
Confidence 32 2267778888888888877766552266666666665
No 29
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.91 E-value=8.6e-24 Score=236.67 Aligned_cols=155 Identities=18% Similarity=0.201 Sum_probs=124.3
Q ss_pred ceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCCCCchhhhcccCcEEEccCccccCCc
Q 003090 258 QALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLPSSLSFLINLRTLRLHDRRIQGDL 337 (848)
Q Consensus 258 ~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~~ 337 (848)
+.++.+++.+..+|. -.++|++|++++ +.+... .|..++++++|++|++++|.+....
T Consensus 13 ~~~~c~~~~l~~lp~----l~~~l~~L~Ls~--------------n~i~~~----~~~~~~~l~~L~~L~L~~n~~~~~i 70 (455)
T 3v47_A 13 YNAICINRGLHQVPE----LPAHVNYVDLSL--------------NSIAEL----NETSFSRLQDLQFLKVEQQTPGLVI 70 (455)
T ss_dssp TEEECCSSCCSSCCC----CCTTCCEEECCS--------------SCCCEE----CTTTTSSCTTCCEEECCCCSTTCEE
T ss_pred cccCcCCCCcccCCC----CCCccCEEEecC--------------CccCcC----ChhHhccCccccEEECcCCcccceE
Confidence 345666777788886 237899999999 888874 5788999999999999999776443
Q ss_pred --hhhccccCCCEEEccCCCCccc-ChhhccCCcccEEeccCCccccccCh-hhhhccccccEEeccccccccccccccc
Q 003090 338 --SLIGELSGLEILDLSESDVSEI-PVSFGRLSHLRLLDLTGCYILELIPR-GVLSRLRKLEELYMSHSFRHWQFESESE 413 (848)
Q Consensus 338 --~~i~~l~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~~p~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 413 (848)
..+.++++|++|++++|.+..+ |..++++++|++|++++|...+..|. ..+.++++|++|++++|.+...
T Consensus 71 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~------ 144 (455)
T 3v47_A 71 RNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKI------ 144 (455)
T ss_dssp CTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSC------
T ss_pred CcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCcc------
Confidence 6789999999999999999865 77899999999999999877654433 2368899999999999988764
Q ss_pred cccCcccchhh-hcccCCCcEEEeeccCCCCCCCC
Q 003090 414 EDSSSNAKFIE-LGALSRLTSLHIHIPEGKIMPSD 447 (848)
Q Consensus 414 ~~~~~~~~~~~-L~~l~~L~~L~l~~~~~~~~~~~ 447 (848)
.+.. ++++++|+.|++++|.+...+..
T Consensus 145 -------~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 172 (455)
T 3v47_A 145 -------QPASFFLNMRRFHVLDLTFNKVKSICEE 172 (455)
T ss_dssp -------CCCGGGGGCTTCCEEECTTCCBSCCCTT
T ss_pred -------CcccccCCCCcccEEeCCCCcccccChh
Confidence 2333 78899999999999987765443
No 30
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.91 E-value=1.3e-23 Score=229.89 Aligned_cols=173 Identities=10% Similarity=0.166 Sum_probs=138.1
Q ss_pred CCcccccccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCCCCchhhhcccCcEEEc
Q 003090 249 PDELECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLPSSLSFLINLRTLRL 328 (848)
Q Consensus 249 p~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp~~~~~l~~L~~L~L 328 (848)
+..+.+++++.|+++++.+..+|..+|..+++|++|++++ +.+... .+..+..+++|++|++
T Consensus 39 ~~~~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~--------------n~i~~~----~~~~~~~l~~L~~L~L 100 (390)
T 3o6n_A 39 FEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLND--------------LQIEEI----DTYAFAYAHTIQKLYM 100 (390)
T ss_dssp CSSGGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTT--------------SCCCEE----CTTTTTTCTTCCEEEC
T ss_pred ccccccCCceEEEecCCchhhCChhHhcccccCcEEECCC--------------Cccccc----ChhhccCCCCcCEEEC
Confidence 3445778999999999999999998888999999999999 777773 3457889999999999
Q ss_pred cCccccCCc-hhhccccCCCEEEccCCCCcccChhh-ccCCcccEEeccCCccccccChhhhhccccccEEecccccccc
Q 003090 329 HDRRIQGDL-SLIGELSGLEILDLSESDVSEIPVSF-GRLSHLRLLDLTGCYILELIPRGVLSRLRKLEELYMSHSFRHW 406 (848)
Q Consensus 329 ~~~~~~~~~-~~i~~l~~L~~L~l~~~~l~~lp~~i-~~L~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~ 406 (848)
++|.+...+ ..++++++|++|++++|.++.+|..+ +++++|++|++++|......|.. +.++++|++|++++|.+..
T Consensus 101 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~ 179 (390)
T 3o6n_A 101 GFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDT-FQATTSLQNLQLSSNRLTH 179 (390)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTT-TSSCTTCCEEECCSSCCSB
T ss_pred CCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhh-ccCCCCCCEEECCCCcCCc
Confidence 999888776 56889999999999999999888774 88999999999998765544444 7899999999999988764
Q ss_pred ccccccccccCcccchhhhcccCCCcEEEeeccCCCCCCCCCccCCCCeEEEE
Q 003090 407 QFESESEEDSSSNAKFIELGALSRLTSLHIHIPEGKIMPSDMSFQNLTSFSIA 459 (848)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~ 459 (848)
. .++.+++|+.|++++|.+..++ ...+|+.|++.
T Consensus 180 ~----------------~~~~l~~L~~L~l~~n~l~~~~---~~~~L~~L~l~ 213 (390)
T 3o6n_A 180 V----------------DLSLIPSLFHANVSYNLLSTLA---IPIAVEELDAS 213 (390)
T ss_dssp C----------------CGGGCTTCSEEECCSSCCSEEE---CCSSCSEEECC
T ss_pred c----------------ccccccccceeecccccccccC---CCCcceEEECC
Confidence 2 3667788999999888766443 23456666665
No 31
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.90 E-value=2.1e-23 Score=231.22 Aligned_cols=324 Identities=17% Similarity=0.096 Sum_probs=193.4
Q ss_pred hccCCCceeeecCCCcccCCcc-cccccceeecccCcCc-ccChHHHccCCce-------------eEEEccCccccccc
Q 003090 231 GWLDLTGISLMFNDIHEVPDEL-ECPKLQALFLQENSPL-AIPDRFFQGMKDL-------------QVLDLGGIRRFSFS 295 (848)
Q Consensus 231 ~~~~l~~l~l~~n~l~~lp~~~-~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L-------------r~L~l~~~~~~~~~ 295 (848)
....++.+++++|.+..+|..+ .+++|++|++++|.+. .+|.. ++.+++| ++|++++
T Consensus 9 ~~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~-~~~l~~L~~l~l~~c~~~~l~~L~l~~------- 80 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPG-NGEQREMAVSRLRDCLDRQAHELELNN------- 80 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTT-SCCCHHHHHHHHHHHHHHTCSEEECTT-------
T ss_pred ccccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcc-cccchhcchhhhhhhhccCCCEEEecC-------
Confidence 3456778888888888888877 8889999999888543 56665 3566654 8888888
Q ss_pred ccCCCCCCCCCCCCCCCCCchhhhcccCcEEEccCccccCCchhhccccCCCEEEccCCCCcccChhhccCCcccEEecc
Q 003090 296 VRFPFLFPPLPSSPLFLLPSSLSFLINLRTLRLHDRRIQGDLSLIGELSGLEILDLSESDVSEIPVSFGRLSHLRLLDLT 375 (848)
Q Consensus 296 ~~~~~~~~~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~ 375 (848)
+.+.+ +|.. .++|++|++++|.+.+.+.. +.+|++|++++|.++.+|.. .++|++|+++
T Consensus 81 -------~~l~~-----lp~~---~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~ 139 (454)
T 1jl5_A 81 -------LGLSS-----LPEL---PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDL---PPLLEYLGVS 139 (454)
T ss_dssp -------SCCSC-----CCSC---CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSC---CTTCCEEECC
T ss_pred -------Ccccc-----CCCC---cCCCCEEEccCCcCCccccc---cCCCcEEECCCCccCcccCC---CCCCCEEECc
Confidence 67776 6652 36788999998877775532 47888999998888877642 2688899998
Q ss_pred CCccccccChhhhhccccccEEeccccccccccccccccccCcccchhhhcccCCCcEEEeeccCCCCCCCCCccCCCCe
Q 003090 376 GCYILELIPRGVLSRLRKLEELYMSHSFRHWQFESESEEDSSSNAKFIELGALSRLTSLHIHIPEGKIMPSDMSFQNLTS 455 (848)
Q Consensus 376 ~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~ 455 (848)
+|...+ +| + ++++++|++|++++|.+... +. ...+|+.|++++|.+..+|....+++|+.
T Consensus 140 ~n~l~~-lp-~-~~~l~~L~~L~l~~N~l~~l-p~----------------~~~~L~~L~L~~n~l~~l~~~~~l~~L~~ 199 (454)
T 1jl5_A 140 NNQLEK-LP-E-LQNSSFLKIIDVDNNSLKKL-PD----------------LPPSLEFIAAGNNQLEELPELQNLPFLTA 199 (454)
T ss_dssp SSCCSS-CC-C-CTTCTTCCEEECCSSCCSCC-CC----------------CCTTCCEEECCSSCCSSCCCCTTCTTCCE
T ss_pred CCCCCC-Cc-c-cCCCCCCCEEECCCCcCccc-CC----------------CcccccEEECcCCcCCcCccccCCCCCCE
Confidence 876654 77 4 78889999999988877642 11 12488889998888888774227888888
Q ss_pred EEEEeCCCCCCCCCcccceEEecccccccccccCccccchhhHHHHHHHHHhhcceeeeccccccccccccccccCCCCC
Q 003090 456 FSIAIGDLEERPLSDFIGLFLQKFKKRCSRAMGLSQDMRISALHSWIKNLLLRSEILALAEVNYFENIVSDLANDGFNEL 535 (848)
Q Consensus 456 L~l~~~~~~~~~~~~l~~l~l~~~~~~c~~~~~l~~~~~l~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~L 535 (848)
|++..+... .+|. .+++|++|+++++... .++. + ..+++|
T Consensus 200 L~l~~N~l~--------------------------------~l~~----~~~~L~~L~l~~n~l~-~lp~-~--~~l~~L 239 (454)
T 1jl5_A 200 IYADNNSLK--------------------------------KLPD----LPLSLESIVAGNNILE-ELPE-L--QNLPFL 239 (454)
T ss_dssp EECCSSCCS--------------------------------SCCC----CCTTCCEEECCSSCCS-SCCC-C--TTCTTC
T ss_pred EECCCCcCC--------------------------------cCCC----CcCcccEEECcCCcCC-cccc-c--CCCCCC
Confidence 887644321 0000 0246777777766433 3332 2 467778
Q ss_pred cEEEEecCCCceeecccccccccccCCCccEEecccccccccccccccccccCCCcceEEEecCchhhHhhhHHHHHhhc
Q 003090 536 MFLVIFRCNEMKYLLNSLERTLRVTLHKLEWLFIRENQNFVEICHGQLPAGCLSNVKRSDVVDCGSILKILLSHLVQSFQ 615 (848)
Q Consensus 536 ~~L~l~~~~~l~~l~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~l~~~~~~~l~ 615 (848)
++|++.++. ++.++ ..+++|++|+++++. ++.+ +. .+++|+.|++++|. + ..+|.. .+
T Consensus 240 ~~L~l~~N~-l~~l~--------~~~~~L~~L~l~~N~-l~~l-----~~-~~~~L~~L~ls~N~-l-~~l~~~----~~ 297 (454)
T 1jl5_A 240 TTIYADNNL-LKTLP--------DLPPSLEALNVRDNY-LTDL-----PE-LPQSLTFLDVSENI-F-SGLSEL----PP 297 (454)
T ss_dssp CEEECCSSC-CSSCC--------SCCTTCCEEECCSSC-CSCC-----CC-CCTTCCEEECCSSC-C-SEESCC----CT
T ss_pred CEEECCCCc-CCccc--------ccccccCEEECCCCc-cccc-----Cc-ccCcCCEEECcCCc-c-CcccCc----CC
Confidence 888887763 22221 124777888887773 4332 22 24677788877764 4 344321 25
Q ss_pred cCcEEEEeccCCceeeeeccccccccccccccCCcCEEecCCCccccccccCCCccccccCccEEEeecC
Q 003090 616 NLQRLRVYSCGLLVSVFEIERVNIAKEETELFSSLEKLTLWDLPRMTDIWKGDTQFVSLHNLKKVRVEEC 685 (848)
Q Consensus 616 ~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~l~~l~~L~~L~i~~C 685 (848)
+|++|++++|. ++.++. ..++|++|+++++ .++.++.. +++|+.|++++|
T Consensus 298 ~L~~L~l~~N~-l~~i~~------------~~~~L~~L~Ls~N-~l~~lp~~------~~~L~~L~L~~N 347 (454)
T 1jl5_A 298 NLYYLNASSNE-IRSLCD------------LPPSLEELNVSNN-KLIELPAL------PPRLERLIASFN 347 (454)
T ss_dssp TCCEEECCSSC-CSEECC------------CCTTCCEEECCSS-CCSCCCCC------CTTCCEEECCSS
T ss_pred cCCEEECcCCc-CCcccC------------CcCcCCEEECCCC-cccccccc------CCcCCEEECCCC
Confidence 77777777663 333321 1247777777774 35544332 467777777776
No 32
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.90 E-value=7.6e-23 Score=230.24 Aligned_cols=191 Identities=21% Similarity=0.248 Sum_probs=154.8
Q ss_pred CceeeecCCCcccCCcccccccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCCCCc
Q 003090 236 TGISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLPS 315 (848)
Q Consensus 236 ~~l~l~~n~l~~lp~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp~ 315 (848)
+.++.+++.+..+|..+. +++++|++++|.+..++...|.++++|++|++++ +.+... .|.
T Consensus 14 ~~v~c~~~~l~~ip~~~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~--------------n~i~~~----~~~ 74 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGIP-TETRLLDLGKNRIKTLNQDEFASFPHLEELELNE--------------NIVSAV----EPG 74 (477)
T ss_dssp TEEECCSCCCSSCCSCCC-TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTT--------------SCCCEE----CTT
T ss_pred CEEEeCCCCcCcCCCCCC-CCCcEEECCCCccceECHhHccCCCCCCEEECCC--------------CccCEe----Chh
Confidence 357777888888988764 6899999999999888777788999999999999 778774 578
Q ss_pred hhhhcccCcEEEccCccccCCc-hhhccccCCCEEEccCCCCccc-ChhhccCCcccEEeccCCccccccChhhhhcccc
Q 003090 316 SLSFLINLRTLRLHDRRIQGDL-SLIGELSGLEILDLSESDVSEI-PVSFGRLSHLRLLDLTGCYILELIPRGVLSRLRK 393 (848)
Q Consensus 316 ~~~~l~~L~~L~L~~~~~~~~~-~~i~~l~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~~p~~~l~~l~~ 393 (848)
.+.++++|++|++++|.+...+ ..+.++++|++|++++|.+..+ |..+.++++|++|++++|......+.. +.++++
T Consensus 75 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~ 153 (477)
T 2id5_A 75 AFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRA-FSGLNS 153 (477)
T ss_dssp TTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTS-STTCTT
T ss_pred hhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhh-ccCCCC
Confidence 8999999999999999888777 4578999999999999998855 567889999999999998765544545 889999
Q ss_pred ccEEeccccccccccccccccccCcccchhhhcccCCCcEEEeeccCCCCCCCCC--ccCCCCeEEEE
Q 003090 394 LEELYMSHSFRHWQFESESEEDSSSNAKFIELGALSRLTSLHIHIPEGKIMPSDM--SFQNLTSFSIA 459 (848)
Q Consensus 394 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~ 459 (848)
|++|++++|.+... ....+..+++|+.|++++|.+..++... .+++|+.|++.
T Consensus 154 L~~L~l~~n~l~~~-------------~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~ 208 (477)
T 2id5_A 154 LEQLTLEKCNLTSI-------------PTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEIS 208 (477)
T ss_dssp CCEEEEESCCCSSC-------------CHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEE
T ss_pred CCEEECCCCcCccc-------------ChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCC
Confidence 99999999987654 4456888999999999998877665432 55666666665
No 33
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.90 E-value=2.8e-23 Score=230.42 Aligned_cols=179 Identities=15% Similarity=0.086 Sum_probs=107.0
Q ss_pred cCCCceeeecCCCcccCCcccccccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCC
Q 003090 233 LDLTGISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFL 312 (848)
Q Consensus 233 ~~l~~l~l~~n~l~~lp~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 312 (848)
..++.|++++|.+..+|....+++|++|++++|.+..+| +..+++|++|++++ +.+.+
T Consensus 42 ~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~--------------N~l~~----- 99 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDS--------------NKLTN----- 99 (457)
T ss_dssp TTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCS--------------SCCSC-----
T ss_pred CCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcC--------------CCCce-----
Confidence 345666666666666653336666666666666666654 45666666666666 55555
Q ss_pred CCchhhhcccCcEEEccCccccCCchhhccccCCCEEEccCCCCcccChhhccCCcccEEeccCCccccccChhhhhccc
Q 003090 313 LPSSLSFLINLRTLRLHDRRIQGDLSLIGELSGLEILDLSESDVSEIPVSFGRLSHLRLLDLTGCYILELIPRGVLSRLR 392 (848)
Q Consensus 313 lp~~~~~l~~L~~L~L~~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~l~~l~ 392 (848)
+| ++.+++|++|++++|.+...+ ++.+++|++|++++|.++.+| ++++++|++|++++|...+.++ ++.++
T Consensus 100 ~~--~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~ 170 (457)
T 3bz5_A 100 LD--VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQT 170 (457)
T ss_dssp CC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCT
T ss_pred ee--cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCC
Confidence 43 566666666666666555532 666666666666666666654 5666666666666665555442 45666
Q ss_pred cccEEeccccccccccccccccccCcccchhhhcccCCCcEEEeeccCCCCCCCCCccCCCCeEEEE
Q 003090 393 KLEELYMSHSFRHWQFESESEEDSSSNAKFIELGALSRLTSLHIHIPEGKIMPSDMSFQNLTSFSIA 459 (848)
Q Consensus 393 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~ 459 (848)
+|++|++++|.+... + +..+++|+.|++++|.++.++ ...+++|+.|++.
T Consensus 171 ~L~~L~ls~n~l~~l--------------~--l~~l~~L~~L~l~~N~l~~~~-l~~l~~L~~L~Ls 220 (457)
T 3bz5_A 171 QLTTLDCSFNKITEL--------------D--VSQNKLLNRLNCDTNNITKLD-LNQNIQLTFLDCS 220 (457)
T ss_dssp TCCEEECCSSCCCCC--------------C--CTTCTTCCEEECCSSCCSCCC-CTTCTTCSEEECC
T ss_pred cCCEEECCCCcccee--------------c--cccCCCCCEEECcCCcCCeec-cccCCCCCEEECc
Confidence 666666666655431 1 555666666666666655542 1144555555544
No 34
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=7.9e-23 Score=236.02 Aligned_cols=309 Identities=14% Similarity=0.186 Sum_probs=209.5
Q ss_pred CcccccccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCCCCchhhhcccCcEEEcc
Q 003090 250 DELECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLPSSLSFLINLRTLRLH 329 (848)
Q Consensus 250 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp~~~~~l~~L~~L~L~ 329 (848)
..+.+.+++.+++++|.++.+|..+|.++++|++|++++ +.+... .|..++.+++|++|+++
T Consensus 46 ~~l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~--------------n~l~~~----~~~~~~~l~~L~~L~L~ 107 (597)
T 3oja_B 46 EDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLND--------------LQIEEI----DTYAFAYAHTIQKLYMG 107 (597)
T ss_dssp SSGGGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTT--------------SCCCEE----CTTTTTTCTTCCEEECC
T ss_pred ccccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCC--------------CCCCCC----ChHHhcCCCCCCEEECC
Confidence 345678899999999999999999889999999999999 778773 44588999999999999
Q ss_pred CccccCCc-hhhccccCCCEEEccCCCCcccChh-hccCCcccEEeccCCccccccChhhhhccccccEEeccccccccc
Q 003090 330 DRRIQGDL-SLIGELSGLEILDLSESDVSEIPVS-FGRLSHLRLLDLTGCYILELIPRGVLSRLRKLEELYMSHSFRHWQ 407 (848)
Q Consensus 330 ~~~~~~~~-~~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~ 407 (848)
+|.+...+ ..++++++|++|++++|.++.+|.. ++++++|++|++++|.+.+..|.. ++++++|++|++++|.+...
T Consensus 108 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~ 186 (597)
T 3oja_B 108 FNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDT-FQATTSLQNLQLSSNRLTHV 186 (597)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTT-TTTCTTCCEEECTTSCCSBC
T ss_pred CCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhh-hhcCCcCcEEECcCCCCCCc
Confidence 99888877 5678999999999999999988876 488999999999998776544544 88999999999999987643
Q ss_pred cccccccccCcccchhhhcccCCCcEEEeeccCCCCCCCCCccCCCCeEEEEeCCCCCCCCCcccceEEecccccccccc
Q 003090 408 FESESEEDSSSNAKFIELGALSRLTSLHIHIPEGKIMPSDMSFQNLTSFSIAIGDLEERPLSDFIGLFLQKFKKRCSRAM 487 (848)
Q Consensus 408 ~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~~~c~~~~ 487 (848)
.++.+++|+.|++++|.+..++ ...+|+.|++..+... . +..
T Consensus 187 ----------------~~~~l~~L~~L~l~~n~l~~l~---~~~~L~~L~ls~n~l~--------~--~~~--------- 228 (597)
T 3oja_B 187 ----------------DLSLIPSLFHANVSYNLLSTLA---IPIAVEELDASHNSIN--------V--VRG--------- 228 (597)
T ss_dssp ----------------CGGGCTTCSEEECCSSCCSEEE---CCTTCSEEECCSSCCC--------E--EEC---------
T ss_pred ----------------ChhhhhhhhhhhcccCcccccc---CCchhheeeccCCccc--------c--ccc---------
Confidence 3567788999999988776443 3356777776533320 0 000
Q ss_pred cCccccchhhHHHHHHHHHhhcceeeeccccccccccccccccCCCCCcEEEEecCCCceeecccccccccccCCCccEE
Q 003090 488 GLSQDMRISALHSWIKNLLLRSEILALAEVNYFENIVSDLANDGFNELMFLVIFRCNEMKYLLNSLERTLRVTLHKLEWL 567 (848)
Q Consensus 488 ~l~~~~~l~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~p~L~~L 567 (848)
. .+++|+.|.++++..... ..+ ..+++|+.|+++++...... ......+++|++|
T Consensus 229 -------------~---~~~~L~~L~L~~n~l~~~--~~l--~~l~~L~~L~Ls~N~l~~~~-----~~~~~~l~~L~~L 283 (597)
T 3oja_B 229 -------------P---VNVELTILKLQHNNLTDT--AWL--LNYPGLVEVDLSYNELEKIM-----YHPFVKMQRLERL 283 (597)
T ss_dssp -------------S---CCSCCCEEECCSSCCCCC--GGG--GGCTTCSEEECCSSCCCEEE-----SGGGTTCSSCCEE
T ss_pred -------------c---cCCCCCEEECCCCCCCCC--hhh--ccCCCCCEEECCCCccCCCC-----HHHhcCccCCCEE
Confidence 0 024566666666543321 222 35677777777776432221 1234456777777
Q ss_pred ecccccccccccccccccccCCCcceEEEecCchhhHhhhHHHHHhhccCcEEEEeccCCceeeeecccccccccccccc
Q 003090 568 FIRENQNFVEICHGQLPAGCLSNVKRSDVVDCGSILKILLSHLVQSFQNLQRLRVYSCGLLVSVFEIERVNIAKEETELF 647 (848)
Q Consensus 568 ~l~~~~~L~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l 647 (848)
+++++ .+..+. ...+.+|+|+.|++++|. + ..+|..+ ..+++|++|++++|.- ..+ .+..+
T Consensus 284 ~Ls~N-~l~~l~---~~~~~l~~L~~L~Ls~N~-l-~~i~~~~-~~l~~L~~L~L~~N~l-~~~-----------~~~~~ 344 (597)
T 3oja_B 284 YISNN-RLVALN---LYGQPIPTLKVLDLSHNH-L-LHVERNQ-PQFDRLENLYLDHNSI-VTL-----------KLSTH 344 (597)
T ss_dssp ECTTS-CCCEEE---CSSSCCTTCCEEECCSSC-C-CCCGGGH-HHHTTCSEEECCSSCC-CCC-----------CCCTT
T ss_pred ECCCC-CCCCCC---cccccCCCCcEEECCCCC-C-CccCccc-ccCCCCCEEECCCCCC-CCc-----------Chhhc
Confidence 77766 344331 112346677777777653 4 4555443 5666777777766542 222 13455
Q ss_pred CCcCEEecCCCc
Q 003090 648 SSLEKLTLWDLP 659 (848)
Q Consensus 648 ~~L~~L~l~~c~ 659 (848)
++|+.|++++++
T Consensus 345 ~~L~~L~l~~N~ 356 (597)
T 3oja_B 345 HTLKNLTLSHND 356 (597)
T ss_dssp CCCSEEECCSSC
T ss_pred CCCCEEEeeCCC
Confidence 666666666554
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.89 E-value=3.1e-22 Score=218.86 Aligned_cols=303 Identities=17% Similarity=0.159 Sum_probs=227.7
Q ss_pred ccCCCceeeecCCCcccCCcc--cccccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCC
Q 003090 232 WLDLTGISLMFNDIHEVPDEL--ECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSP 309 (848)
Q Consensus 232 ~~~l~~l~l~~n~l~~lp~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~ 309 (848)
...++.+++++|.+..+|... .+++|++|++++|.+..++...|..+++|++|++++ +.+...
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~--------------n~l~~~- 108 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF--------------NAIRYL- 108 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCS--------------SCCCCC-
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCC--------------CCCCcC-
Confidence 345788999999999999875 799999999999999999887789999999999999 888884
Q ss_pred CCCCCchhhhcccCcEEEccCccccCCchh-hccccCCCEEEccCCCCcccCh-hhccCCcccEEeccCCccccccChhh
Q 003090 310 LFLLPSSLSFLINLRTLRLHDRRIQGDLSL-IGELSGLEILDLSESDVSEIPV-SFGRLSHLRLLDLTGCYILELIPRGV 387 (848)
Q Consensus 310 ~~~lp~~~~~l~~L~~L~L~~~~~~~~~~~-i~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~~ 387 (848)
.|..++.+++|++|++++|.+...+.. ++++++|++|++++|.+..++. .++.+++|++|++++|.... ++
T Consensus 109 ---~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~--- 181 (390)
T 3o6n_A 109 ---PPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VD--- 181 (390)
T ss_dssp ---CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB-CC---
T ss_pred ---CHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc-cc---
Confidence 566789999999999999988877754 6899999999999999997754 58999999999999986644 43
Q ss_pred hhccccccEEeccccccccccccccccccCcccchhhhcccCCCcEEEeeccCCCCCCCCCccCCCCeEEEEeCCCCCCC
Q 003090 388 LSRLRKLEELYMSHSFRHWQFESESEEDSSSNAKFIELGALSRLTSLHIHIPEGKIMPSDMSFQNLTSFSIAIGDLEERP 467 (848)
Q Consensus 388 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 467 (848)
++.+++|+.|++++|.+.. +....+|+.|++++|.+..++.. ..++|+.|++.
T Consensus 182 ~~~l~~L~~L~l~~n~l~~------------------~~~~~~L~~L~l~~n~l~~~~~~-~~~~L~~L~l~-------- 234 (390)
T 3o6n_A 182 LSLIPSLFHANVSYNLLST------------------LAIPIAVEELDASHNSINVVRGP-VNVELTILKLQ-------- 234 (390)
T ss_dssp GGGCTTCSEEECCSSCCSE------------------EECCSSCSEEECCSSCCCEEECC-CCSSCCEEECC--------
T ss_pred cccccccceeecccccccc------------------cCCCCcceEEECCCCeeeecccc-ccccccEEECC--------
Confidence 5789999999999987653 34456899999999988766543 23455555554
Q ss_pred CCcccceEEecccccccccccCccccchhhHHHHHHHHHhhcceeeeccccccccccccccccCCCCCcEEEEecCCCce
Q 003090 468 LSDFIGLFLQKFKKRCSRAMGLSQDMRISALHSWIKNLLLRSEILALAEVNYFENIVSDLANDGFNELMFLVIFRCNEMK 547 (848)
Q Consensus 468 ~~~l~~l~l~~~~~~c~~~~~l~~~~~l~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~ 547 (848)
++..... ..+ ..+++|++|+++++....
T Consensus 235 ------------------------------------------------~n~l~~~--~~l--~~l~~L~~L~Ls~n~l~~ 262 (390)
T 3o6n_A 235 ------------------------------------------------HNNLTDT--AWL--LNYPGLVEVDLSYNELEK 262 (390)
T ss_dssp ------------------------------------------------SSCCCCC--GGG--GGCTTCSEEECCSSCCCE
T ss_pred ------------------------------------------------CCCCccc--HHH--cCCCCccEEECCCCcCCC
Confidence 3322111 111 466888888888875332
Q ss_pred eecccccccccccCCCccEEecccccccccccccccccccCCCcceEEEecCchhhHhhhHHHHHhhccCcEEEEeccCC
Q 003090 548 YLLNSLERTLRVTLHKLEWLFIRENQNFVEICHGQLPAGCLSNVKRSDVVDCGSILKILLSHLVQSFQNLQRLRVYSCGL 627 (848)
Q Consensus 548 ~l~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~l~~~~~~~l~~L~~L~l~~c~~ 627 (848)
.. ......+++|++|+++++ .++.+. .....+++|+.|++++| .+ ..+|..+ ..+++|++|++++|.
T Consensus 263 ~~-----~~~~~~l~~L~~L~L~~n-~l~~~~---~~~~~l~~L~~L~L~~n-~l-~~~~~~~-~~l~~L~~L~L~~N~- 329 (390)
T 3o6n_A 263 IM-----YHPFVKMQRLERLYISNN-RLVALN---LYGQPIPTLKVLDLSHN-HL-LHVERNQ-PQFDRLENLYLDHNS- 329 (390)
T ss_dssp EE-----SGGGTTCSSCCEEECCSS-CCCEEE---CSSSCCTTCCEEECCSS-CC-CCCGGGH-HHHTTCSEEECCSSC-
T ss_pred cC-----hhHccccccCCEEECCCC-cCcccC---cccCCCCCCCEEECCCC-cc-eecCccc-cccCcCCEEECCCCc-
Confidence 21 124456788888888887 455441 12235788888888887 45 5666543 677888888888875
Q ss_pred ceeeeeccccccccccccccCCcCEEecCCCc
Q 003090 628 LVSVFEIERVNIAKEETELFSSLEKLTLWDLP 659 (848)
Q Consensus 628 l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 659 (848)
++.+ .+..+++|++|++++++
T Consensus 330 i~~~-----------~~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 330 IVTL-----------KLSTHHTLKNLTLSHND 350 (390)
T ss_dssp CCCC-----------CCCTTCCCSEEECCSSC
T ss_pred ccee-----------CchhhccCCEEEcCCCC
Confidence 3333 24467777777777754
No 36
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.89 E-value=8e-23 Score=226.50 Aligned_cols=310 Identities=17% Similarity=0.064 Sum_probs=176.0
Q ss_pred CCcccccccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCCCCchhhhccc------
Q 003090 249 PDELECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLPSSLSFLIN------ 322 (848)
Q Consensus 249 p~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp~~~~~l~~------ 322 (848)
|+.+..+.|++|++++|.++.+|+++ +++++|++|++++ +.+.+. +|.+++++.+
T Consensus 5 p~~~~~~~L~~L~l~~n~l~~iP~~i-~~L~~L~~L~l~~--------------n~~~~~----~p~~~~~l~~L~~l~l 65 (454)
T 1jl5_A 5 PRNVSNTFLQEPLRHSSNLTEMPVEA-ENVKSKTEYYNAW--------------SEWERN----APPGNGEQREMAVSRL 65 (454)
T ss_dssp ------------------------------CCHHHHHHHH--------------HHHHHT----SCTTSCCCHHHHHHHH
T ss_pred ccccccccchhhhcccCchhhCChhH-hcccchhhhhccC--------------Cccccc----CCcccccchhcchhhh
Confidence 44556789999999999999999874 8999999999999 555544 6777776665
Q ss_pred -------CcEEEccCccccCCchhhccccCCCEEEccCCCCcccChhhccCCcccEEeccCCccccccChhhhhcccccc
Q 003090 323 -------LRTLRLHDRRIQGDLSLIGELSGLEILDLSESDVSEIPVSFGRLSHLRLLDLTGCYILELIPRGVLSRLRKLE 395 (848)
Q Consensus 323 -------L~~L~L~~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~l~~l~~L~ 395 (848)
+++|++++|.+.+.+.. .++|++|++++|.++.+|.. +.+|++|++++|... .+|.. .++|+
T Consensus 66 ~~c~~~~l~~L~l~~~~l~~lp~~---~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~-~l~~~----~~~L~ 134 (454)
T 1jl5_A 66 RDCLDRQAHELELNNLGLSSLPEL---PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLK-ALSDL----PPLLE 134 (454)
T ss_dssp HHHHHHTCSEEECTTSCCSCCCSC---CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCS-CCCSC----CTTCC
T ss_pred hhhhccCCCEEEecCCccccCCCC---cCCCCEEEccCCcCCccccc---cCCCcEEECCCCccC-cccCC----CCCCC
Confidence 48888888876665442 36788888888888888753 478888888887553 34431 16888
Q ss_pred EEeccccccccccccccccccCcccchhhhcccCCCcEEEeeccCCCCCCCCCccCCCCeEEEEeCCCCCCCCCcccceE
Q 003090 396 ELYMSHSFRHWQFESESEEDSSSNAKFIELGALSRLTSLHIHIPEGKIMPSDMSFQNLTSFSIAIGDLEERPLSDFIGLF 475 (848)
Q Consensus 396 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~ 475 (848)
+|++++|.+.. .+ .++++++|++|++++|.++.+|.. ..+|+.|++..+.... .+.+
T Consensus 135 ~L~L~~n~l~~--------------lp-~~~~l~~L~~L~l~~N~l~~lp~~--~~~L~~L~L~~n~l~~--l~~~---- 191 (454)
T 1jl5_A 135 YLGVSNNQLEK--------------LP-ELQNSSFLKIIDVDNNSLKKLPDL--PPSLEFIAAGNNQLEE--LPEL---- 191 (454)
T ss_dssp EEECCSSCCSS--------------CC-CCTTCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSS--CCCC----
T ss_pred EEECcCCCCCC--------------Cc-ccCCCCCCCEEECCCCcCcccCCC--cccccEEECcCCcCCc--Cccc----
Confidence 88888887653 22 478888888888888888777654 3577777776443311 0000
Q ss_pred EecccccccccccCccccchhhHHHHHHHHHhhcceeeeccccccccccccccccCCCCCcEEEEecCCCceeecccccc
Q 003090 476 LQKFKKRCSRAMGLSQDMRISALHSWIKNLLLRSEILALAEVNYFENIVSDLANDGFNELMFLVIFRCNEMKYLLNSLER 555 (848)
Q Consensus 476 l~~~~~~c~~~~~l~~~~~l~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~l~~~~~~ 555 (848)
. .+++|+.|+++++.... ++. ..++|++|++.+|. ++.++
T Consensus 192 -~---------------------------~l~~L~~L~l~~N~l~~-l~~-----~~~~L~~L~l~~n~-l~~lp----- 231 (454)
T 1jl5_A 192 -Q---------------------------NLPFLTAIYADNNSLKK-LPD-----LPLSLESIVAGNNI-LEELP----- 231 (454)
T ss_dssp -T---------------------------TCTTCCEEECCSSCCSS-CCC-----CCTTCCEEECCSSC-CSSCC-----
T ss_pred -c---------------------------CCCCCCEEECCCCcCCc-CCC-----CcCcccEEECcCCc-CCccc-----
Confidence 0 13667777777665332 111 22577777777773 33321
Q ss_pred cccccCCCccEEecccccccccccccccccccCCCcceEEEecCchhhHhhhHHHHHhhccCcEEEEeccCCceeeeecc
Q 003090 556 TLRVTLHKLEWLFIRENQNFVEICHGQLPAGCLSNVKRSDVVDCGSILKILLSHLVQSFQNLQRLRVYSCGLLVSVFEIE 635 (848)
Q Consensus 556 ~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~~~ 635 (848)
....+++|++|+++++. ++.+ +. .+++|+.|++++|. + ..+|.. +++|++|++++|. ++.++.
T Consensus 232 -~~~~l~~L~~L~l~~N~-l~~l-----~~-~~~~L~~L~l~~N~-l-~~l~~~----~~~L~~L~ls~N~-l~~l~~-- 294 (454)
T 1jl5_A 232 -ELQNLPFLTTIYADNNL-LKTL-----PD-LPPSLEALNVRDNY-L-TDLPEL----PQSLTFLDVSENI-FSGLSE-- 294 (454)
T ss_dssp -CCTTCTTCCEEECCSSC-CSSC-----CS-CCTTCCEEECCSSC-C-SCCCCC----CTTCCEEECCSSC-CSEESC--
T ss_pred -ccCCCCCCCEEECCCCc-CCcc-----cc-cccccCEEECCCCc-c-cccCcc----cCcCCEEECcCCc-cCcccC--
Confidence 24456777777777763 3332 22 35677777777754 4 445432 3677777777764 333321
Q ss_pred ccccccccccccCCcCEEecCCCccccccccCCCccccccCccEEEeecC
Q 003090 636 RVNIAKEETELFSSLEKLTLWDLPRMTDIWKGDTQFVSLHNLKKVRVEEC 685 (848)
Q Consensus 636 ~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~l~~l~~L~~L~i~~C 685 (848)
..++|++|+++++. ++.++.. .++|+.|+++++
T Consensus 295 ----------~~~~L~~L~l~~N~-l~~i~~~------~~~L~~L~Ls~N 327 (454)
T 1jl5_A 295 ----------LPPNLYYLNASSNE-IRSLCDL------PPSLEELNVSNN 327 (454)
T ss_dssp ----------CCTTCCEEECCSSC-CSEECCC------CTTCCEEECCSS
T ss_pred ----------cCCcCCEEECcCCc-CCcccCC------cCcCCEEECCCC
Confidence 12577777777653 4443221 147777777765
No 37
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.89 E-value=4.1e-22 Score=214.33 Aligned_cols=301 Identities=16% Similarity=0.156 Sum_probs=233.8
Q ss_pred cCCCceeeecCCCcccCCcccccccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCC
Q 003090 233 LDLTGISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFL 312 (848)
Q Consensus 233 ~~l~~l~l~~n~l~~lp~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 312 (848)
..++.++++++.+..++....+++|++|++++|.+..++. +..+++|++|++++ +.+..
T Consensus 44 ~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~--------------n~i~~----- 102 (347)
T 4fmz_A 44 ESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGT--------------NKITD----- 102 (347)
T ss_dssp TTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCS--------------SCCCC-----
T ss_pred ccccEEEEeCCccccchhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccC--------------CcccC-----
Confidence 4578899999999999875589999999999999988887 78999999999999 77877
Q ss_pred CCchhhhcccCcEEEccCccccCCchhhccccCCCEEEccCCCCcccChhhccCCcccEEeccCCccccccChhhhhccc
Q 003090 313 LPSSLSFLINLRTLRLHDRRIQGDLSLIGELSGLEILDLSESDVSEIPVSFGRLSHLRLLDLTGCYILELIPRGVLSRLR 392 (848)
Q Consensus 313 lp~~~~~l~~L~~L~L~~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~l~~l~ 392 (848)
+| .+..+++|++|++++|.+...+. +..+++|++|++++|.....+..+..+++|++|++++|... .++. +..++
T Consensus 103 ~~-~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~--~~~l~ 177 (347)
T 4fmz_A 103 IS-ALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVK-DVTP--IANLT 177 (347)
T ss_dssp CG-GGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCC-CCGG--GGGCT
T ss_pred ch-HHcCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcC-Cchh--hccCC
Confidence 65 59999999999999997766555 89999999999999965544456999999999999998654 4554 78999
Q ss_pred cccEEeccccccccccccccccccCcccchhhhcccCCCcEEEeeccCCCCCCCCCccCCCCeEEEEeCCCCCCCCCccc
Q 003090 393 KLEELYMSHSFRHWQFESESEEDSSSNAKFIELGALSRLTSLHIHIPEGKIMPSDMSFQNLTSFSIAIGDLEERPLSDFI 472 (848)
Q Consensus 393 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 472 (848)
+|++|++++|.+... ..+..+++|+.|++++|.+..++....+++|+.|++.
T Consensus 178 ~L~~L~l~~n~l~~~---------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~------------- 229 (347)
T 4fmz_A 178 DLYSLSLNYNQIEDI---------------SPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIG------------- 229 (347)
T ss_dssp TCSEEECTTSCCCCC---------------GGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECC-------------
T ss_pred CCCEEEccCCccccc---------------ccccCCCccceeecccCCCCCCchhhcCCcCCEEEcc-------------
Confidence 999999999987643 2388999999999999988766542255666666654
Q ss_pred ceEEecccccccccccCccccchhhHHHHHHHHHhhcceeeeccccccccccccccccCCCCCcEEEEecCCCceeeccc
Q 003090 473 GLFLQKFKKRCSRAMGLSQDMRISALHSWIKNLLLRSEILALAEVNYFENIVSDLANDGFNELMFLVIFRCNEMKYLLNS 552 (848)
Q Consensus 473 ~l~l~~~~~~c~~~~~l~~~~~l~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~l~~~ 552 (848)
++.... ... ...+++|++|++.+|. ++.+
T Consensus 230 -------------------------------------------~n~l~~-~~~---~~~l~~L~~L~l~~n~-l~~~--- 258 (347)
T 4fmz_A 230 -------------------------------------------NNKITD-LSP---LANLSQLTWLEIGTNQ-ISDI--- 258 (347)
T ss_dssp -------------------------------------------SSCCCC-CGG---GTTCTTCCEEECCSSC-CCCC---
T ss_pred -------------------------------------------CCccCC-Ccc---hhcCCCCCEEECCCCc-cCCC---
Confidence 322111 111 2467888999998874 3332
Q ss_pred ccccccccCCCccEEecccccccccccccccccccCCCcceEEEecCchhhHhhhHHHHHhhccCcEEEEeccCCceeee
Q 003090 553 LERTLRVTLHKLEWLFIRENQNFVEICHGQLPAGCLSNVKRSDVVDCGSILKILLSHLVQSFQNLQRLRVYSCGLLVSVF 632 (848)
Q Consensus 553 ~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~l~~~~~~~l~~L~~L~l~~c~~l~~~~ 632 (848)
.....+++|++|++++| .++.+ .....+++|+.|++++|. + ...++..+..+++|++|++++|+ ++.++
T Consensus 259 ---~~~~~l~~L~~L~l~~n-~l~~~----~~~~~l~~L~~L~L~~n~-l-~~~~~~~l~~l~~L~~L~L~~n~-l~~~~ 327 (347)
T 4fmz_A 259 ---NAVKDLTKLKMLNVGSN-QISDI----SVLNNLSQLNSLFLNNNQ-L-GNEDMEVIGGLTNLTTLFLSQNH-ITDIR 327 (347)
T ss_dssp ---GGGTTCTTCCEEECCSS-CCCCC----GGGGGCTTCSEEECCSSC-C-CGGGHHHHHTCTTCSEEECCSSS-CCCCG
T ss_pred ---hhHhcCCCcCEEEccCC-ccCCC----hhhcCCCCCCEEECcCCc-C-CCcChhHhhccccCCEEEccCCc-ccccc
Confidence 34567899999999988 45554 224468999999999985 4 44444455889999999999987 55543
Q ss_pred eccccccccccccccCCcCEEecCCCc
Q 003090 633 EIERVNIAKEETELFSSLEKLTLWDLP 659 (848)
Q Consensus 633 ~~~~~~~~~~~~~~l~~L~~L~l~~c~ 659 (848)
.+..+++|++|++++++
T Consensus 328 ----------~~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 328 ----------PLASLSKMDSADFANQV 344 (347)
T ss_dssp ----------GGGGCTTCSEESSSCC-
T ss_pred ----------Chhhhhccceeehhhhc
Confidence 36689999999999876
No 38
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.89 E-value=6.6e-22 Score=219.36 Aligned_cols=160 Identities=16% Similarity=0.147 Sum_probs=132.6
Q ss_pred cccccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCCCCchhhhcccCcEEEccCcc
Q 003090 253 ECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLPSSLSFLINLRTLRLHDRR 332 (848)
Q Consensus 253 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp~~~~~l~~L~~L~L~~~~ 332 (848)
.+++|++|++++|.+..+|. +..+++|++|++++ +.+.+ +| ++.+++|++|++++|.
T Consensus 40 ~l~~L~~L~Ls~n~l~~~~~--l~~l~~L~~L~Ls~--------------n~l~~-----~~--~~~l~~L~~L~Ls~N~ 96 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITDMTG--IEKLTGLTKLICTS--------------NNITT-----LD--LSQNTNLTYLACDSNK 96 (457)
T ss_dssp HHTTCCEEECCSSCCCCCTT--GGGCTTCSEEECCS--------------SCCSC-----CC--CTTCTTCSEEECCSSC
T ss_pred HcCCCCEEEccCCCcccChh--hcccCCCCEEEccC--------------CcCCe-----Ec--cccCCCCCEEECcCCC
Confidence 68899999999998888873 68999999999999 88887 65 8899999999999998
Q ss_pred ccCCchhhccccCCCEEEccCCCCcccChhhccCCcccEEeccCCccccccChhhhhccccccEEecccccccccccccc
Q 003090 333 IQGDLSLIGELSGLEILDLSESDVSEIPVSFGRLSHLRLLDLTGCYILELIPRGVLSRLRKLEELYMSHSFRHWQFESES 412 (848)
Q Consensus 333 ~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 412 (848)
+.+.+ ++++++|++|++++|.++.+| ++++++|++|++++|...+ ++ ++++++|++|++++|.....
T Consensus 97 l~~~~--~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~-l~---l~~l~~L~~L~l~~n~~~~~----- 163 (457)
T 3bz5_A 97 LTNLD--VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTE-ID---VSHNTQLTELDCHLNKKITK----- 163 (457)
T ss_dssp CSCCC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSC-CC---CTTCTTCCEEECTTCSCCCC-----
T ss_pred Cceee--cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCccce-ec---cccCCcCCEEECCCCCcccc-----
Confidence 77753 889999999999999999886 8899999999999987655 43 68899999999999854432
Q ss_pred ccccCcccchhhhcccCCCcEEEeeccCCCCCCCCCccCCCCeEEEE
Q 003090 413 EEDSSSNAKFIELGALSRLTSLHIHIPEGKIMPSDMSFQNLTSFSIA 459 (848)
Q Consensus 413 ~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~ 459 (848)
. .++.+++|+.|++++|.++.++ ...+++|+.|.+.
T Consensus 164 --------~--~~~~l~~L~~L~ls~n~l~~l~-l~~l~~L~~L~l~ 199 (457)
T 3bz5_A 164 --------L--DVTPQTQLTTLDCSFNKITELD-VSQNKLLNRLNCD 199 (457)
T ss_dssp --------C--CCTTCTTCCEEECCSSCCCCCC-CTTCTTCCEEECC
T ss_pred --------c--ccccCCcCCEEECCCCccceec-cccCCCCCEEECc
Confidence 1 4778899999999999888776 1166667766665
No 39
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.88 E-value=4.1e-22 Score=224.24 Aligned_cols=314 Identities=17% Similarity=0.178 Sum_probs=210.4
Q ss_pred ceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCCCCchhhhcccCcEEEccCccccCCc
Q 003090 258 QALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLPSSLSFLINLRTLRLHDRRIQGDL 337 (848)
Q Consensus 258 ~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~~ 337 (848)
+.++.+++.+..+|..+ .+++++|++++ +.+... .|..+.++++|++|++++|.+....
T Consensus 14 ~~v~c~~~~l~~ip~~~---~~~l~~L~L~~--------------n~l~~~----~~~~~~~l~~L~~L~L~~n~i~~~~ 72 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGI---PTETRLLDLGK--------------NRIKTL----NQDEFASFPHLEELELNENIVSAVE 72 (477)
T ss_dssp TEEECCSCCCSSCCSCC---CTTCSEEECCS--------------SCCCEE----CTTTTTTCTTCCEEECTTSCCCEEC
T ss_pred CEEEeCCCCcCcCCCCC---CCCCcEEECCC--------------CccceE----CHhHccCCCCCCEEECCCCccCEeC
Confidence 56677777888888754 46889999999 888873 4678999999999999999877764
Q ss_pred -hhhccccCCCEEEccCCCCcccChh-hccCCcccEEeccCCccccccChhhhhccccccEEeccccccccccccccccc
Q 003090 338 -SLIGELSGLEILDLSESDVSEIPVS-FGRLSHLRLLDLTGCYILELIPRGVLSRLRKLEELYMSHSFRHWQFESESEED 415 (848)
Q Consensus 338 -~~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 415 (848)
..++++++|++|++++|.++.+|.. +.++++|++|++++|......|.. +.++++|++|++++|.+...
T Consensus 73 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~l~~n~l~~~-------- 143 (477)
T 2id5_A 73 PGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYM-FQDLYNLKSLEVGDNDLVYI-------- 143 (477)
T ss_dssp TTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTT-TTTCTTCCEEEECCTTCCEE--------
T ss_pred hhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhH-ccccccCCEEECCCCcccee--------
Confidence 7889999999999999999988865 688999999999998776655555 89999999999999988765
Q ss_pred cCcccchhhhcccCCCcEEEeeccCCCCCCCCC--ccCCCCeEEEEeCCCCCCCCCcccceEEecccccccccccCcccc
Q 003090 416 SSSNAKFIELGALSRLTSLHIHIPEGKIMPSDM--SFQNLTSFSIAIGDLEERPLSDFIGLFLQKFKKRCSRAMGLSQDM 493 (848)
Q Consensus 416 ~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~~~c~~~~~l~~~~ 493 (848)
.+..+..+++|+.|++++|.+..++... .+++|+.|++..+..
T Consensus 144 -----~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i------------------------------ 188 (477)
T 2id5_A 144 -----SHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI------------------------------ 188 (477)
T ss_dssp -----CTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCC------------------------------
T ss_pred -----ChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcC------------------------------
Confidence 4456888999999999999888777543 677777777764332
Q ss_pred chhhHHHHHHHHHhhcceeeeccccccccccccccccCCCCCcEEEEecCCCceeecccccccccccCCCccEEeccccc
Q 003090 494 RISALHSWIKNLLLRSEILALAEVNYFENIVSDLANDGFNELMFLVIFRCNEMKYLLNSLERTLRVTLHKLEWLFIRENQ 573 (848)
Q Consensus 494 ~l~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~p~L~~L~l~~~~ 573 (848)
.......+ ..+++|+.|++.+|..+..++. .....++|++|+++++
T Consensus 189 --------------------------~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~-----~~~~~~~L~~L~l~~n- 234 (477)
T 2id5_A 189 --------------------------NAIRDYSF--KRLYRLKVLEISHWPYLDTMTP-----NCLYGLNLTSLSITHC- 234 (477)
T ss_dssp --------------------------CEECTTCS--CSCTTCCEEEEECCTTCCEECT-----TTTTTCCCSEEEEESS-
T ss_pred --------------------------cEeChhhc--ccCcccceeeCCCCccccccCc-----ccccCccccEEECcCC-
Confidence 10001111 3456666666666655544321 1112236666666665
Q ss_pred ccccccccccccccCCCcceEEEecCchhhHhhhHHHHHhhccCcEEEEeccCCceeeeeccccccccccccccCCcCEE
Q 003090 574 NFVEICHGQLPAGCLSNVKRSDVVDCGSILKILLSHLVQSFQNLQRLRVYSCGLLVSVFEIERVNIAKEETELFSSLEKL 653 (848)
Q Consensus 574 ~L~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L 653 (848)
+++.+... ....+++|+.|++++|. + ..++...+..+++|++|++++|. ++.+.. ..+..+++|++|
T Consensus 235 ~l~~~~~~--~~~~l~~L~~L~Ls~n~-l-~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~--------~~~~~l~~L~~L 301 (477)
T 2id5_A 235 NLTAVPYL--AVRHLVYLRFLNLSYNP-I-STIEGSMLHELLRLQEIQLVGGQ-LAVVEP--------YAFRGLNYLRVL 301 (477)
T ss_dssp CCCSCCHH--HHTTCTTCCEEECCSSC-C-CEECTTSCTTCTTCCEEECCSSC-CSEECT--------TTBTTCTTCCEE
T ss_pred cccccCHH--HhcCccccCeeECCCCc-C-CccChhhccccccCCEEECCCCc-cceECH--------HHhcCcccCCEE
Confidence 33332110 12345666666666653 3 34444333556667777776653 233321 345566777777
Q ss_pred ecCCCccccccccCCCccccccCccEEEeecCc
Q 003090 654 TLWDLPRMTDIWKGDTQFVSLHNLKKVRVEECD 686 (848)
Q Consensus 654 ~l~~c~~L~~l~~~~~~l~~l~~L~~L~i~~C~ 686 (848)
+++++ .++.++... +..+++|++|++++++
T Consensus 302 ~L~~N-~l~~~~~~~--~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 302 NVSGN-QLTTLEESV--FHSVGNLETLILDSNP 331 (477)
T ss_dssp ECCSS-CCSCCCGGG--BSCGGGCCEEECCSSC
T ss_pred ECCCC-cCceeCHhH--cCCCcccCEEEccCCC
Confidence 77765 455554432 4556777777776654
No 40
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.87 E-value=3.3e-23 Score=240.26 Aligned_cols=219 Identities=14% Similarity=0.010 Sum_probs=100.7
Q ss_pred HhhcceeeeccccccccccccccccCCCCCcEEEEecCCCceeecccccccccccCCCccEEeccc----------cccc
Q 003090 506 LLRSEILALAEVNYFENIVSDLANDGFNELMFLVIFRCNEMKYLLNSLERTLRVTLHKLEWLFIRE----------NQNF 575 (848)
Q Consensus 506 ~~~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~p~L~~L~l~~----------~~~L 575 (848)
+++|++|++++|.........+ ...+++|+.|++.++..-.. .......+++|++|++.+ |..+
T Consensus 292 ~~~L~~L~Ls~~~l~~~~~~~~-~~~~~~L~~L~L~~~~~~~~-----l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~ 365 (592)
T 3ogk_B 292 AAQIRKLDLLYALLETEDHCTL-IQKCPNLEVLETRNVIGDRG-----LEVLAQYCKQLKRLRIERGADEQGMEDEEGLV 365 (592)
T ss_dssp GGGCCEEEETTCCCCHHHHHHH-HTTCTTCCEEEEEGGGHHHH-----HHHHHHHCTTCCEEEEECCCCSSTTSSTTCCC
T ss_pred cCCCcEEecCCCcCCHHHHHHH-HHhCcCCCEEeccCccCHHH-----HHHHHHhCCCCCEEEeecCccccccccccCcc
Confidence 3566666666665211111111 13556677776663311110 011223456666666663 4443
Q ss_pred ccccccccccccCCCcceEEEecCchhhHhhhHHHHHhhccCcEEEEec---cCCceeeeeccccccccccccccCCcCE
Q 003090 576 VEICHGQLPAGCLSNVKRSDVVDCGSILKILLSHLVQSFQNLQRLRVYS---CGLLVSVFEIERVNIAKEETELFSSLEK 652 (848)
Q Consensus 576 ~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~l~~~~~~~l~~L~~L~l~~---c~~l~~~~~~~~~~~~~~~~~~l~~L~~ 652 (848)
+......+ ...+++|++|++ .|..++...+..+...+++|++|++++ |+.++..|..+. ....+..+++|++
T Consensus 366 ~~~~~~~l-~~~~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~---~~~~~~~~~~L~~ 440 (592)
T 3ogk_B 366 SQRGLIAL-AQGCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNG---VRSLLIGCKKLRR 440 (592)
T ss_dssp CHHHHHHH-HHHCTTCSEEEE-EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHH---HHHHHHHCTTCCE
T ss_pred CHHHHHHH-HhhCccCeEEEe-ecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHH---HHHHHHhCCCCCE
Confidence 32100000 113566666666 344442333333334466666666663 334443321000 0011334666666
Q ss_pred EecCCCcc-ccccccCCCccccccCccEEEeecCccccccccCccccccccceeeeccccccceeeeecCCCCCCCCCCC
Q 003090 653 LTLWDLPR-MTDIWKGDTQFVSLHNLKKVRVEECDELRQVFPANFGKKAAAEEMVLYRKRRDQIHIHATTSTSSPTPSLG 731 (848)
Q Consensus 653 L~l~~c~~-L~~l~~~~~~l~~l~~L~~L~i~~C~~L~~~~p~~~~~~~~~~~l~l~~l~~~~l~i~~c~~~~~~~~~l~ 731 (848)
|+++.|.+ +....... -...+++|+.|++++|. +++. ..+.....++
T Consensus 441 L~L~~~~~~l~~~~~~~-~~~~~~~L~~L~L~~n~-l~~~------------------------------~~~~~~~~~~ 488 (592)
T 3ogk_B 441 FAFYLRQGGLTDLGLSY-IGQYSPNVRWMLLGYVG-ESDE------------------------------GLMEFSRGCP 488 (592)
T ss_dssp EEEECCGGGCCHHHHHH-HHHSCTTCCEEEECSCC-SSHH------------------------------HHHHHHTCCT
T ss_pred EEEecCCCCccHHHHHH-HHHhCccceEeeccCCC-CCHH------------------------------HHHHHHhcCc
Confidence 66665543 11110000 01235666666666553 2221 0011123457
Q ss_pred CccEEEEecCCCCceecccchhhccccccEEEEeccc
Q 003090 732 NLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVRSCP 768 (848)
Q Consensus 732 ~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~ 768 (848)
+|++|+|++|+ +..-........+++|++|++++|.
T Consensus 489 ~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 489 NLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp TCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred ccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence 77777777776 5433222345567777777777776
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.86 E-value=6.5e-21 Score=220.00 Aligned_cols=302 Identities=14% Similarity=0.118 Sum_probs=237.4
Q ss_pred cCCCceeeecCCCcccCCcc--cccccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCC
Q 003090 233 LDLTGISLMFNDIHEVPDEL--ECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPL 310 (848)
Q Consensus 233 ~~l~~l~l~~n~l~~lp~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~ 310 (848)
..++.+++++|.+..+|... .+++|++|++++|.+..+++..|..+++|++|++++ +.+...
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~--------------n~l~~~-- 114 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF--------------NAIRYL-- 114 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCS--------------SCCCCC--
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCC--------------CcCCCC--
Confidence 45678999999999999876 789999999999999999887789999999999999 888884
Q ss_pred CCCCchhhhcccCcEEEccCccccCCchh-hccccCCCEEEccCCCCcccCh-hhccCCcccEEeccCCccccccChhhh
Q 003090 311 FLLPSSLSFLINLRTLRLHDRRIQGDLSL-IGELSGLEILDLSESDVSEIPV-SFGRLSHLRLLDLTGCYILELIPRGVL 388 (848)
Q Consensus 311 ~~lp~~~~~l~~L~~L~L~~~~~~~~~~~-i~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~~l 388 (848)
.|..++.+++|++|++++|.+...++. ++++++|++|++++|.+..+|. .++.+++|++|++++|.... ++ +
T Consensus 115 --~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~---~ 188 (597)
T 3oja_B 115 --PPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VD---L 188 (597)
T ss_dssp --CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB-CC---G
T ss_pred --CHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC-cC---h
Confidence 556679999999999999988887754 6999999999999999996654 69999999999999986644 44 5
Q ss_pred hccccccEEeccccccccccccccccccCcccchhhhcccCCCcEEEeeccCCCCCCCCCccCCCCeEEEEeCCCCCCCC
Q 003090 389 SRLRKLEELYMSHSFRHWQFESESEEDSSSNAKFIELGALSRLTSLHIHIPEGKIMPSDMSFQNLTSFSIAIGDLEERPL 468 (848)
Q Consensus 389 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 468 (848)
+.+++|+.|++++|.+.. +....+|+.|++++|.+..++... .++|+.|++..+.... .
T Consensus 189 ~~l~~L~~L~l~~n~l~~------------------l~~~~~L~~L~ls~n~l~~~~~~~-~~~L~~L~L~~n~l~~--~ 247 (597)
T 3oja_B 189 SLIPSLFHANVSYNLLST------------------LAIPIAVEELDASHNSINVVRGPV-NVELTILKLQHNNLTD--T 247 (597)
T ss_dssp GGCTTCSEEECCSSCCSE------------------EECCTTCSEEECCSSCCCEEECSC-CSCCCEEECCSSCCCC--C
T ss_pred hhhhhhhhhhcccCcccc------------------ccCCchhheeeccCCccccccccc-CCCCCEEECCCCCCCC--C
Confidence 779999999999987653 345568999999999988776653 4689998887554310 0
Q ss_pred CcccceEEecccccccccccCccccchhhHHHHHHHHHhhcceeeeccccccccccccccccCCCCCcEEEEecCCCcee
Q 003090 469 SDFIGLFLQKFKKRCSRAMGLSQDMRISALHSWIKNLLLRSEILALAEVNYFENIVSDLANDGFNELMFLVIFRCNEMKY 548 (848)
Q Consensus 469 ~~l~~l~l~~~~~~c~~~~~l~~~~~l~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~ 548 (848)
+ ++ ..+++|+.|+++++......+..+ ..+++|+.|+++++. ++.
T Consensus 248 ~-------------------------------~l-~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~Ls~N~-l~~ 292 (597)
T 3oja_B 248 A-------------------------------WL-LNYPGLVEVDLSYNELEKIMYHPF--VKMQRLERLYISNNR-LVA 292 (597)
T ss_dssp G-------------------------------GG-GGCTTCSEEECCSSCCCEEESGGG--TTCSSCCEEECTTSC-CCE
T ss_pred h-------------------------------hh-ccCCCCCEEECCCCccCCCCHHHh--cCccCCCEEECCCCC-CCC
Confidence 0 00 114789999999887655444444 578999999999985 443
Q ss_pred ecccccccccccCCCccEEecccccccccccccccccccCCCcceEEEecCchhhHhhhHHHHHhhccCcEEEEeccC
Q 003090 549 LLNSLERTLRVTLHKLEWLFIRENQNFVEICHGQLPAGCLSNVKRSDVVDCGSILKILLSHLVQSFQNLQRLRVYSCG 626 (848)
Q Consensus 549 l~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~l~~~~~~~l~~L~~L~l~~c~ 626 (848)
++ .....+|+|++|++++|. +..+. ...+.+++|+.|++++|. + ..+| ...+++|+.|++++|+
T Consensus 293 l~-----~~~~~l~~L~~L~Ls~N~-l~~i~---~~~~~l~~L~~L~L~~N~-l-~~~~---~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 293 LN-----LYGQPIPTLKVLDLSHNH-LLHVE---RNQPQFDRLENLYLDHNS-I-VTLK---LSTHHTLKNLTLSHND 356 (597)
T ss_dssp EE-----CSSSCCTTCCEEECCSSC-CCCCG---GGHHHHTTCSEEECCSSC-C-CCCC---CCTTCCCSEEECCSSC
T ss_pred CC-----cccccCCCCcEEECCCCC-CCccC---cccccCCCCCEEECCCCC-C-CCcC---hhhcCCCCEEEeeCCC
Confidence 32 123558999999999984 54432 123468999999999975 4 4554 2678999999999986
No 42
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.84 E-value=1.8e-21 Score=225.72 Aligned_cols=406 Identities=14% Similarity=0.057 Sum_probs=240.8
Q ss_pred cccccceeecccCcCcccChHHHcc-CCc-eeEEEccCcccccccccCCCCCCCCCCCCCCCCCchhhhcccCcEEEccC
Q 003090 253 ECPKLQALFLQENSPLAIPDRFFQG-MKD-LQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLPSSLSFLINLRTLRLHD 330 (848)
Q Consensus 253 ~~~~L~~L~l~~~~~~~~~~~~~~~-~~~-Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp~~~~~l~~L~~L~L~~ 330 (848)
.+++|++|++++|.+.......+.. ++. |++|++++|.. +... .++..+..+++|++|++++
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~-------------~~~~---~l~~~~~~~~~L~~L~L~~ 173 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSG-------------FTTD---GLLSIVTHCRKIKTLLMEE 173 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEE-------------EEHH---HHHHHHHHCTTCSEEECTT
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCC-------------cCHH---HHHHHHhhCCCCCEEECcc
Confidence 4678888888877554322222223 334 88888887421 1110 0333445778888888888
Q ss_pred ccccCC----c-hhhccccCCCEEEccCCCCc-----ccChhhccCCcccEEeccCCccccccChhhhhccccccEEecc
Q 003090 331 RRIQGD----L-SLIGELSGLEILDLSESDVS-----EIPVSFGRLSHLRLLDLTGCYILELIPRGVLSRLRKLEELYMS 400 (848)
Q Consensus 331 ~~~~~~----~-~~i~~l~~L~~L~l~~~~l~-----~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~ 400 (848)
|.+... + ..+..+++|++|++++|.++ .++..+.++++|++|++++|... .+|.. +.++++|++|+++
T Consensus 174 ~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~-~l~~~-~~~~~~L~~L~l~ 251 (592)
T 3ogk_B 174 SSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL-ELVGF-FKAAANLEEFCGG 251 (592)
T ss_dssp CEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG-GGHHH-HHHCTTCCEEEEC
T ss_pred ccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH-HHHHH-HhhhhHHHhhccc
Confidence 865443 2 24466788888888887765 44555667888888888886554 36654 7788888888876
Q ss_pred ccccccccccccccccCcccchhhhcccCCCcEEEeeccCCCCCCCCC-ccCCCCeEEEEeCCCCCCCCCcccceEEecc
Q 003090 401 HSFRHWQFESESEEDSSSNAKFIELGALSRLTSLHIHIPEGKIMPSDM-SFQNLTSFSIAIGDLEERPLSDFIGLFLQKF 479 (848)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~ 479 (848)
....... .......+..+++|+.|+++.+....++..+ .+++|++|++..+..
T Consensus 252 ~~~~~~~----------~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l---------------- 305 (592)
T 3ogk_B 252 SLNEDIG----------MPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALL---------------- 305 (592)
T ss_dssp BCCCCTT----------CTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCC----------------
T ss_pred ccccccc----------hHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcC----------------
Confidence 5322111 1123456677778888888776555555555 677788887763331
Q ss_pred cccccccccCccccchhhHHHHHHHHHhhcceeeeccccccccccccccccCCCCCcEEEEec----------CCCceee
Q 003090 480 KKRCSRAMGLSQDMRISALHSWIKNLLLRSEILALAEVNYFENIVSDLANDGFNELMFLVIFR----------CNEMKYL 549 (848)
Q Consensus 480 ~~~c~~~~~l~~~~~l~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~~----------~~~l~~l 549 (848)
.-..+. .+...+++|+.|++.++.....+... ...+++|++|++.+ |..++..
T Consensus 306 --------------~~~~~~-~~~~~~~~L~~L~L~~~~~~~~l~~~--~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~ 368 (592)
T 3ogk_B 306 --------------ETEDHC-TLIQKCPNLEVLETRNVIGDRGLEVL--AQYCKQLKRLRIERGADEQGMEDEEGLVSQR 368 (592)
T ss_dssp --------------CHHHHH-HHHTTCTTCCEEEEEGGGHHHHHHHH--HHHCTTCCEEEEECCCCSSTTSSTTCCCCHH
T ss_pred --------------CHHHHH-HHHHhCcCCCEEeccCccCHHHHHHH--HHhCCCCCEEEeecCccccccccccCccCHH
Confidence 001111 11223578888888743322222111 13578999999995 6655431
Q ss_pred cccccccccccCCCccEEecccccccccccccccccccCCCcceEEEec---CchhhHh------hhHHHHHhhccCcEE
Q 003090 550 LNSLERTLRVTLHKLEWLFIRENQNFVEICHGQLPAGCLSNVKRSDVVD---CGSILKI------LLSHLVQSFQNLQRL 620 (848)
Q Consensus 550 ~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~l~~L~~L~l~~---c~~l~~~------l~~~~~~~l~~L~~L 620 (848)
........+|+|++|.+ .|.+++.-....+. ..+++|+.|++.+ |+.+ .. ++. ....+++|++|
T Consensus 369 ---~~~~l~~~~~~L~~L~l-~~~~l~~~~~~~l~-~~~~~L~~L~l~~~~~~n~l-~~~p~~~~~~~-~~~~~~~L~~L 441 (592)
T 3ogk_B 369 ---GLIALAQGCQELEYMAV-YVSDITNESLESIG-TYLKNLCDFRLVLLDREERI-TDLPLDNGVRS-LLIGCKKLRRF 441 (592)
T ss_dssp ---HHHHHHHHCTTCSEEEE-EESCCCHHHHHHHH-HHCCSCCEEEEEECSCCSCC-SSCCCHHHHHH-HHHHCTTCCEE
T ss_pred ---HHHHHHhhCccCeEEEe-ecCCccHHHHHHHH-hhCCCCcEEEEeecCCCccc-cCchHHHHHHH-HHHhCCCCCEE
Confidence 01112345899999999 44444432111111 1388999999984 5566 54 333 34678999999
Q ss_pred EEeccCC-ceeeeeccccccccccccccCCcCEEecCCCccccccccCCCccccccCccEEEeecCccccccccCccccc
Q 003090 621 RVYSCGL-LVSVFEIERVNIAKEETELFSSLEKLTLWDLPRMTDIWKGDTQFVSLHNLKKVRVEECDELRQVFPANFGKK 699 (848)
Q Consensus 621 ~l~~c~~-l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~l~~l~~L~~L~i~~C~~L~~~~p~~~~~~ 699 (848)
++++|.. +..... ......+++|++|++++|. +...... ..+..+++|++|+|++|+ +++...
T Consensus 442 ~L~~~~~~l~~~~~-------~~~~~~~~~L~~L~L~~n~-l~~~~~~-~~~~~~~~L~~L~l~~n~-l~~~~~------ 505 (592)
T 3ogk_B 442 AFYLRQGGLTDLGL-------SYIGQYSPNVRWMLLGYVG-ESDEGLM-EFSRGCPNLQKLEMRGCC-FSERAI------ 505 (592)
T ss_dssp EEECCGGGCCHHHH-------HHHHHSCTTCCEEEECSCC-SSHHHHH-HHHTCCTTCCEEEEESCC-CBHHHH------
T ss_pred EEecCCCCccHHHH-------HHHHHhCccceEeeccCCC-CCHHHHH-HHHhcCcccCeeeccCCC-CcHHHH------
Confidence 9988764 221100 0112347899999999875 4321000 013568999999999998 543200
Q ss_pred cccceeeeccccccceeeeecCCCCCCCCCCCCccEEEEecCCCCceecccchhhccccccEEEEecc
Q 003090 700 AAAEEMVLYRKRRDQIHIHATTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVRSC 767 (848)
Q Consensus 700 ~~~~~l~l~~l~~~~l~i~~c~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C 767 (848)
+.....+++|+.|++++|+ ++..........++.|....+...
T Consensus 506 ------------------------~~~~~~l~~L~~L~ls~n~-it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 506 ------------------------AAAVTKLPSLRYLWVQGYR-ASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp ------------------------HHHHHHCSSCCEEEEESCB-CCTTCTTGGGGCCTTEEEEEECCC
T ss_pred ------------------------HHHHHhcCccCeeECcCCc-CCHHHHHHHHHhCCCcEEEEecCc
Confidence 0111346889999999987 655433234456677766665543
No 43
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.84 E-value=7.5e-21 Score=201.61 Aligned_cols=239 Identities=20% Similarity=0.247 Sum_probs=169.0
Q ss_pred EEEeCCCCchhHHHHHHHHHHhhccccCcEEEEEeccCCchhHHHHHHHhccCCCceeeecCCCcccCCcc-ccccccee
Q 003090 182 GICGMGGVGKTTLVKEIQKQAKEMKMFDDVAMAVVSQTPSITKIQYEIAGWLDLTGISLMFNDIHEVPDEL-ECPKLQAL 260 (848)
Q Consensus 182 ~i~G~gG~GKTtla~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~~~l~~l~l~~n~l~~lp~~~-~~~~L~~L 260 (848)
.++.|.|++.+..+..+... .+.....+.++. ..+..++..+.....++.|++++|.+..+|..+ .+++|++|
T Consensus 59 ~~~~~~g~~~~~~~~~l~~~-----~~~~l~~L~L~~-n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L 132 (328)
T 4fcg_A 59 QIETRTGRALKATADLLEDA-----TQPGRVALELRS-VPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETL 132 (328)
T ss_dssp TSCCSHHHHHHHHHHHHHHH-----TSTTCCEEEEES-SCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEE
T ss_pred cccccCCcchhhhHHHHhcc-----cccceeEEEccC-CCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEE
Confidence 34566676666555444332 234444555554 344566666666667788888888888787766 77888888
Q ss_pred ecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCCCCchhh---------hcccCcEEEccCc
Q 003090 261 FLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLPSSLS---------FLINLRTLRLHDR 331 (848)
Q Consensus 261 ~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp~~~~---------~l~~L~~L~L~~~ 331 (848)
++++|.+..+|.. +.++++|++|++++| .+.+. +|..+. .+++|++|++++|
T Consensus 133 ~Ls~n~l~~lp~~-l~~l~~L~~L~L~~n--------------~~~~~----~p~~~~~~~~~~~~~~l~~L~~L~L~~n 193 (328)
T 4fcg_A 133 TLARNPLRALPAS-IASLNRLRELSIRAC--------------PELTE----LPEPLASTDASGEHQGLVNLQSLRLEWT 193 (328)
T ss_dssp EEESCCCCCCCGG-GGGCTTCCEEEEEEE--------------TTCCC----CCSCSEEEC-CCCEEESTTCCEEEEEEE
T ss_pred ECCCCccccCcHH-HhcCcCCCEEECCCC--------------CCccc----cChhHhhccchhhhccCCCCCEEECcCC
Confidence 8888877777765 467888888888873 33332 555444 4788888888888
Q ss_pred cccCCchhhccccCCCEEEccCCCCcccChhhccCCcccEEeccCCccccccChhhhhccccccEEeccccccccccccc
Q 003090 332 RIQGDLSLIGELSGLEILDLSESDVSEIPVSFGRLSHLRLLDLTGCYILELIPRGVLSRLRKLEELYMSHSFRHWQFESE 411 (848)
Q Consensus 332 ~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~ 411 (848)
.+...+..++++++|++|++++|.++.+|..++.+++|++|++++|...+.+|.. ++.+++|++|++++|.+...
T Consensus 194 ~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~-~~~l~~L~~L~L~~n~~~~~---- 268 (328)
T 4fcg_A 194 GIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPI-FGGRAPLKRLILKDCSNLLT---- 268 (328)
T ss_dssp CCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCC-TTCCCCCCEEECTTCTTCCB----
T ss_pred CcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHH-hcCCCCCCEEECCCCCchhh----
Confidence 7776667788888888888888888888877888888888888888777777776 67888888888888776654
Q ss_pred cccccCcccchhhhcccCCCcEEEeeccC-CCCCCCCC-ccCCCCeEEEE
Q 003090 412 SEEDSSSNAKFIELGALSRLTSLHIHIPE-GKIMPSDM-SFQNLTSFSIA 459 (848)
Q Consensus 412 ~~~~~~~~~~~~~L~~l~~L~~L~l~~~~-~~~~~~~~-~~~~L~~L~l~ 459 (848)
.+..++++++|+.|++++|. ...+|..+ .+++|+.+.+.
T Consensus 269 ---------~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 269 ---------LPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP 309 (328)
T ss_dssp ---------CCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECC
T ss_pred ---------cchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCC
Confidence 45567778888888888866 45667666 77777777654
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.83 E-value=3.7e-20 Score=197.43 Aligned_cols=148 Identities=21% Similarity=0.280 Sum_probs=74.0
Q ss_pred CCceeeecCCCcccCCcccccccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCCCC
Q 003090 235 LTGISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLP 314 (848)
Q Consensus 235 l~~l~l~~n~l~~lp~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp 314 (848)
++.++++++.+..+|..+. +++++|++++|.+..++...|.++++|++|++++ +.+... .|
T Consensus 35 l~~l~~~~~~l~~ip~~~~-~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~--------------n~l~~~----~~ 95 (332)
T 2ft3_A 35 LRVVQCSDLGLKAVPKEIS-PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVN--------------NKISKI----HE 95 (332)
T ss_dssp TTEEECCSSCCSSCCSCCC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS--------------SCCCEE----CG
T ss_pred CCEEECCCCCccccCCCCC-CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCC--------------CccCcc----CH
Confidence 4555555555555554442 4555555555555555444445555555555555 444442 24
Q ss_pred chhhhcccCcEEEccCccccCCchhhccccCCCEEEccCCCCcccChh-hccCCcccEEeccCCcccc--ccChhhhhcc
Q 003090 315 SSLSFLINLRTLRLHDRRIQGDLSLIGELSGLEILDLSESDVSEIPVS-FGRLSHLRLLDLTGCYILE--LIPRGVLSRL 391 (848)
Q Consensus 315 ~~~~~l~~L~~L~L~~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~--~~p~~~l~~l 391 (848)
..++.+++|++|++++|.+...+..+. ++|++|++++|.+..+|.. +.++++|++|++++|.... ..|.. +..+
T Consensus 96 ~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~l 172 (332)
T 2ft3_A 96 KAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGA-FDGL 172 (332)
T ss_dssp GGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTS-SCSC
T ss_pred hHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCccc-ccCC
Confidence 455555555555555555444443332 4555555555555544432 4555555555555544321 22222 3444
Q ss_pred ccccEEeccccccc
Q 003090 392 RKLEELYMSHSFRH 405 (848)
Q Consensus 392 ~~L~~L~l~~~~~~ 405 (848)
+|++|++++|.+.
T Consensus 173 -~L~~L~l~~n~l~ 185 (332)
T 2ft3_A 173 -KLNYLRISEAKLT 185 (332)
T ss_dssp -CCSCCBCCSSBCS
T ss_pred -ccCEEECcCCCCC
Confidence 5555555555443
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.83 E-value=9.6e-20 Score=194.18 Aligned_cols=293 Identities=16% Similarity=0.147 Sum_probs=211.8
Q ss_pred ccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCCCCchhhhcccCcEEEccCccccC
Q 003090 256 KLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLPSSLSFLINLRTLRLHDRRIQG 335 (848)
Q Consensus 256 ~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~ 335 (848)
+++.++++++.+..+|..+ .++|++|++++ +.+... .|..+.++++|++|++++|.+..
T Consensus 34 ~l~~l~~~~~~l~~ip~~~---~~~l~~L~l~~--------------n~i~~~----~~~~~~~l~~L~~L~L~~n~l~~ 92 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI---SPDTTLLDLQN--------------NDISEL----RKDDFKGLQHLYALVLVNNKISK 92 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC---CTTCCEEECCS--------------SCCCEE----CTTTTTTCTTCCEEECCSSCCCE
T ss_pred cCCEEECCCCCccccCCCC---CCCCeEEECCC--------------CcCCcc----CHhHhhCCCCCcEEECCCCccCc
Confidence 7899999999998998764 46899999999 778773 35689999999999999998877
Q ss_pred Cc-hhhccccCCCEEEccCCCCcccChhhccCCcccEEeccCCccccccChhhhhccccccEEecccccccccccccccc
Q 003090 336 DL-SLIGELSGLEILDLSESDVSEIPVSFGRLSHLRLLDLTGCYILELIPRGVLSRLRKLEELYMSHSFRHWQFESESEE 414 (848)
Q Consensus 336 ~~-~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 414 (848)
.. ..++++++|++|++++|.++.+|..+. ++|++|++++|... .+|...+.++++|++|++++|.+...
T Consensus 93 ~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~------- 162 (332)
T 2ft3_A 93 IHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENS------- 162 (332)
T ss_dssp ECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCBGG-------
T ss_pred cCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCccccC-------
Confidence 64 789999999999999999999998766 89999999998665 56665589999999999999987531
Q ss_pred ccCcccchhhhcccCCCcEEEeeccCCCCCCCCCccCCCCeEEEEeCCCCCCCCCcccceEEecccccccccccCccccc
Q 003090 415 DSSSNAKFIELGALSRLTSLHIHIPEGKIMPSDMSFQNLTSFSIAIGDLEERPLSDFIGLFLQKFKKRCSRAMGLSQDMR 494 (848)
Q Consensus 415 ~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~~~c~~~~~l~~~~~ 494 (848)
+..+..+..+ +|+.|++++|.++.+|..+. ++|+.|++..+..-......+.
T Consensus 163 ----~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~-~~L~~L~l~~n~i~~~~~~~l~---------------------- 214 (332)
T 2ft3_A 163 ----GFEPGAFDGL-KLNYLRISEAKLTGIPKDLP-ETLNELHLDHNKIQAIELEDLL---------------------- 214 (332)
T ss_dssp ----GSCTTSSCSC-CCSCCBCCSSBCSSCCSSSC-SSCSCCBCCSSCCCCCCTTSST----------------------
T ss_pred ----CCCcccccCC-ccCEEECcCCCCCccCcccc-CCCCEEECCCCcCCccCHHHhc----------------------
Confidence 1134556666 89999999999998887653 7888888875543111110000
Q ss_pred hhhHHHHHHHHHhhcceeeeccccccccccccccccCCCCCcEEEEecCCCceeecccccccccccCCCccEEecccccc
Q 003090 495 ISALHSWIKNLLLRSEILALAEVNYFENIVSDLANDGFNELMFLVIFRCNEMKYLLNSLERTLRVTLHKLEWLFIRENQN 574 (848)
Q Consensus 495 l~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~p~L~~L~l~~~~~ 574 (848)
.+++|+.|+++++.........+ ..+++|++|++.++. ++.++. ....+++|++|+++++ .
T Consensus 215 ----------~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~-l~~lp~-----~l~~l~~L~~L~l~~N-~ 275 (332)
T 2ft3_A 215 ----------RYSKLYRLGLGHNQIRMIENGSL--SFLPTLRELHLDNNK-LSRVPA-----GLPDLKLLQVVYLHTN-N 275 (332)
T ss_dssp ----------TCTTCSCCBCCSSCCCCCCTTGG--GGCTTCCEEECCSSC-CCBCCT-----TGGGCTTCCEEECCSS-C
T ss_pred ----------CCCCCCEEECCCCcCCcCChhHh--hCCCCCCEEECCCCc-CeecCh-----hhhcCccCCEEECCCC-C
Confidence 13678888888776543322233 467899999999884 444321 2456899999999988 4
Q ss_pred ccccccccccc----ccCCCcceEEEecCchhhHhhhHHHHHhhccCcEEEEeccC
Q 003090 575 FVEICHGQLPA----GCLSNVKRSDVVDCGSILKILLSHLVQSFQNLQRLRVYSCG 626 (848)
Q Consensus 575 L~~~~~~~~~~----~~l~~L~~L~l~~c~~l~~~l~~~~~~~l~~L~~L~l~~c~ 626 (848)
++.+....+.. ..++.|+.|++.+++.....+++..+..+++|+.|++++|.
T Consensus 276 l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 276 ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 55542222211 12677899999988743124454445778899999988875
No 46
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.83 E-value=7.2e-22 Score=229.18 Aligned_cols=217 Identities=15% Similarity=0.036 Sum_probs=115.7
Q ss_pred HhhcceeeeccccccccccccccccCCCCCcEEEEecCCCceeecccccccccccCCCccEEecccc--------ccccc
Q 003090 506 LLRSEILALAEVNYFENIVSDLANDGFNELMFLVIFRCNEMKYLLNSLERTLRVTLHKLEWLFIREN--------QNFVE 577 (848)
Q Consensus 506 ~~~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~p~L~~L~l~~~--------~~L~~ 577 (848)
+++|++|+++++......... ....+++|++|.+.+|. .. .........+++|++|++.+| ..+..
T Consensus 288 ~~~L~~L~L~~~~l~~~~l~~-~~~~~~~L~~L~l~~~~--~~---~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~ 361 (594)
T 2p1m_B 288 CSRLTTLNLSYATVQSYDLVK-LLCQCPKLQRLWVLDYI--ED---AGLEVLASTCKDLRELRVFPSEPFVMEPNVALTE 361 (594)
T ss_dssp HTTCCEEECTTCCCCHHHHHH-HHTTCTTCCEEEEEGGG--HH---HHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCH
T ss_pred hCCCCEEEccCCCCCHHHHHH-HHhcCCCcCEEeCcCcc--CH---HHHHHHHHhCCCCCEEEEecCcccccccCCCCCH
Confidence 467777777777622111111 12366888888888772 11 000112234788888888442 23322
Q ss_pred ccccccccccCCCcceEEEecCchhhHhhhHHHHHhhccCcEEEEe-----ccCCceeeeeccccccccccccccCCcCE
Q 003090 578 ICHGQLPAGCLSNVKRSDVVDCGSILKILLSHLVQSFQNLQRLRVY-----SCGLLVSVFEIERVNIAKEETELFSSLEK 652 (848)
Q Consensus 578 ~~~~~~~~~~l~~L~~L~l~~c~~l~~~l~~~~~~~l~~L~~L~l~-----~c~~l~~~~~~~~~~~~~~~~~~l~~L~~ 652 (848)
.....+. ..+++|+.|.+ +|..++...+..+...+++|++|++. +|..++..+..+. ....+..+++|++
T Consensus 362 ~~l~~l~-~~~~~L~~L~~-~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~---~~~l~~~~~~L~~ 436 (594)
T 2p1m_B 362 QGLVSVS-MGCPKLESVLY-FCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIG---FGAIVEHCKDLRR 436 (594)
T ss_dssp HHHHHHH-HHCTTCCEEEE-EESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHH---HHHHHHHCTTCCE
T ss_pred HHHHHHH-HhchhHHHHHH-hcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhH---HHHHHhhCCCccE
Confidence 1000000 13778888844 45555233334444567888888888 5666664431100 0011446778888
Q ss_pred EecCCCccccccccCCCccc-cccCccEEEeecCccccccccCccccccccceeeeccccccceeeeecCCCCCCCCCCC
Q 003090 653 LTLWDLPRMTDIWKGDTQFV-SLHNLKKVRVEECDELRQVFPANFGKKAAAEEMVLYRKRRDQIHIHATTSTSSPTPSLG 731 (848)
Q Consensus 653 L~l~~c~~L~~l~~~~~~l~-~l~~L~~L~i~~C~~L~~~~p~~~~~~~~~~~l~l~~l~~~~l~i~~c~~~~~~~~~l~ 731 (848)
|++++ .+...... .+. .+++|+.|++++|. +++..+.. ....++
T Consensus 437 L~L~~--~l~~~~~~--~l~~~~~~L~~L~L~~~~-i~~~~~~~------------------------------l~~~~~ 481 (594)
T 2p1m_B 437 LSLSG--LLTDKVFE--YIGTYAKKMEMLSVAFAG-DSDLGMHH------------------------------VLSGCD 481 (594)
T ss_dssp EECCS--SCCHHHHH--HHHHHCTTCCEEEEESCC-SSHHHHHH------------------------------HHHHCT
T ss_pred EeecC--cccHHHHH--HHHHhchhccEeeccCCC-CcHHHHHH------------------------------HHhcCC
Confidence 88865 33321110 112 36778888888775 33210000 012367
Q ss_pred CccEEEEecCCCCceecccchhhccccccEEEEecccc
Q 003090 732 NLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVRSCPT 769 (848)
Q Consensus 732 ~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~ 769 (848)
+|++|++++|+. ...........+++|++|++++|+.
T Consensus 482 ~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 482 SLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp TCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred CcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 788888888774 4332223455678888888888864
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.83 E-value=1.1e-19 Score=193.50 Aligned_cols=187 Identities=19% Similarity=0.262 Sum_probs=117.1
Q ss_pred CCceeeecCCCcccCCcccccccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCCCC
Q 003090 235 LTGISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLP 314 (848)
Q Consensus 235 l~~l~l~~n~l~~lp~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp 314 (848)
++.++++++.+..+|..+. +.+++|++++|.+..++...|.++++|++|++++ +.+... .|
T Consensus 33 l~~l~~~~~~l~~lp~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~--------------n~l~~~----~~ 93 (330)
T 1xku_A 33 LRVVQCSDLGLEKVPKDLP-PDTALLDLQNNKITEIKDGDFKNLKNLHTLILIN--------------NKISKI----SP 93 (330)
T ss_dssp TTEEECTTSCCCSCCCSCC-TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS--------------SCCCCB----CT
T ss_pred CeEEEecCCCccccCccCC-CCCeEEECCCCcCCEeChhhhccCCCCCEEECCC--------------CcCCee----CH
Confidence 4567777777777776543 5677777777777777665567777777777777 666663 36
Q ss_pred chhhhcccCcEEEccCccccCCchhhccccCCCEEEccCCCCcccCh-hhccCCcccEEeccCCcccc--ccChhhhhcc
Q 003090 315 SSLSFLINLRTLRLHDRRIQGDLSLIGELSGLEILDLSESDVSEIPV-SFGRLSHLRLLDLTGCYILE--LIPRGVLSRL 391 (848)
Q Consensus 315 ~~~~~l~~L~~L~L~~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~--~~p~~~l~~l 391 (848)
..++.+++|++|++++|.+...+..+. ++|++|++++|.++.++. .+.++++|++|++++|.... ..+.. +.++
T Consensus 94 ~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~l 170 (330)
T 1xku_A 94 GAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA-FQGM 170 (330)
T ss_dssp TTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTG-GGGC
T ss_pred HHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhh-ccCC
Confidence 667777777777777776665554433 567777777777775554 36667777777777765532 23333 6667
Q ss_pred ccccEEeccccccccccccccccccCcccchhhhcccCCCcEEEeeccCCCCCCC-CC-ccCCCCeEEEE
Q 003090 392 RKLEELYMSHSFRHWQFESESEEDSSSNAKFIELGALSRLTSLHIHIPEGKIMPS-DM-SFQNLTSFSIA 459 (848)
Q Consensus 392 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~ 459 (848)
++|++|++++|.+... +..+ .++|+.|++++|.+..++. .+ .+++|+.|++.
T Consensus 171 ~~L~~L~l~~n~l~~l--------------~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 224 (330)
T 1xku_A 171 KKLSYIRIADTNITTI--------------PQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLS 224 (330)
T ss_dssp TTCCEEECCSSCCCSC--------------CSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECC
T ss_pred CCcCEEECCCCccccC--------------Cccc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECC
Confidence 7777777777665432 1111 1567777777766655432 22 55556665554
No 48
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.82 E-value=2.9e-20 Score=195.90 Aligned_cols=176 Identities=19% Similarity=0.299 Sum_probs=135.7
Q ss_pred CCCceeeecCCCc---ccCCcc-cccccceeeccc-CcCc-ccChHHHccCCceeEEEccCcccccccccCCCCCCCCCC
Q 003090 234 DLTGISLMFNDIH---EVPDEL-ECPKLQALFLQE-NSPL-AIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPS 307 (848)
Q Consensus 234 ~l~~l~l~~n~l~---~lp~~~-~~~~L~~L~l~~-~~~~-~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~ 307 (848)
.++.+++++|.+. .+|..+ .+++|++|++++ |.+. .+|.. +.++++|++|++++ +.+.+
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~-l~~l~~L~~L~Ls~--------------n~l~~ 115 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITH--------------TNVSG 115 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEE--------------ECCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChh-HhcCCCCCEEECcC--------------CeeCC
Confidence 4567888888887 477766 788888888884 5444 56655 57888888888888 67764
Q ss_pred CCCCCCCchhhhcccCcEEEccCccccCC-chhhccccCCCEEEccCCCCc-ccChhhccCC-cccEEeccCCccccccC
Q 003090 308 SPLFLLPSSLSFLINLRTLRLHDRRIQGD-LSLIGELSGLEILDLSESDVS-EIPVSFGRLS-HLRLLDLTGCYILELIP 384 (848)
Q Consensus 308 ~~~~~lp~~~~~l~~L~~L~L~~~~~~~~-~~~i~~l~~L~~L~l~~~~l~-~lp~~i~~L~-~L~~L~l~~~~~~~~~p 384 (848)
. +|..+..+++|++|++++|.+.+. +..++.+++|++|++++|.++ .+|..++++. +|++|++++|...+.+|
T Consensus 116 ~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~ 191 (313)
T 1ogq_A 116 A----IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP 191 (313)
T ss_dssp E----CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECC
T ss_pred c----CCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCC
Confidence 4 788888888888888888877744 477888888888888888888 7888888887 88888888887777777
Q ss_pred hhhhhccccccEEeccccccccccccccccccCcccchhhhcccCCCcEEEeeccCCCC
Q 003090 385 RGVLSRLRKLEELYMSHSFRHWQFESESEEDSSSNAKFIELGALSRLTSLHIHIPEGKI 443 (848)
Q Consensus 385 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~ 443 (848)
.. +..+. |+.|++++|.+... .+..+..+++|+.|++++|.+..
T Consensus 192 ~~-~~~l~-L~~L~Ls~N~l~~~-------------~~~~~~~l~~L~~L~L~~N~l~~ 235 (313)
T 1ogq_A 192 PT-FANLN-LAFVDLSRNMLEGD-------------ASVLFGSDKNTQKIHLAKNSLAF 235 (313)
T ss_dssp GG-GGGCC-CSEEECCSSEEEEC-------------CGGGCCTTSCCSEEECCSSEECC
T ss_pred hH-HhCCc-ccEEECcCCcccCc-------------CCHHHhcCCCCCEEECCCCceee
Confidence 76 67776 88888888877654 45667788888888888876653
No 49
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.82 E-value=3.2e-19 Score=189.99 Aligned_cols=169 Identities=18% Similarity=0.218 Sum_probs=139.4
Q ss_pred cccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCCCCchhhhcccCcEEEccCcccc
Q 003090 255 PKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLPSSLSFLINLRTLRLHDRRIQ 334 (848)
Q Consensus 255 ~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~ 334 (848)
.+++.++++++.+..+|..+ .+++++|++++ +.+... .+..+.++++|++|++++|.+.
T Consensus 31 c~l~~l~~~~~~l~~lp~~~---~~~l~~L~L~~--------------n~i~~~----~~~~~~~l~~L~~L~L~~n~l~ 89 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDL---PPDTALLDLQN--------------NKITEI----KDGDFKNLKNLHTLILINNKIS 89 (330)
T ss_dssp EETTEEECTTSCCCSCCCSC---CTTCCEEECCS--------------SCCCCB----CTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCeEEEecCCCccccCccC---CCCCeEEECCC--------------CcCCEe----ChhhhccCCCCCEEECCCCcCC
Confidence 37899999999888898753 46899999999 888883 3347999999999999999888
Q ss_pred CC-chhhccccCCCEEEccCCCCcccChhhccCCcccEEeccCCccccccChhhhhccccccEEeccccccccccccccc
Q 003090 335 GD-LSLIGELSGLEILDLSESDVSEIPVSFGRLSHLRLLDLTGCYILELIPRGVLSRLRKLEELYMSHSFRHWQFESESE 413 (848)
Q Consensus 335 ~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 413 (848)
.. +..++++++|++|++++|.++.+|..+. ++|++|++++|... .++...+.++++|++|++++|.+...
T Consensus 90 ~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~------ 160 (330)
T 1xku_A 90 KISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSS------ 160 (330)
T ss_dssp CBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGG------
T ss_pred eeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECCCCccc-ccCHhHhcCCccccEEECCCCcCCcc------
Confidence 77 4789999999999999999999998765 79999999998665 56665589999999999999987532
Q ss_pred cccCcccchhhhcccCCCcEEEeeccCCCCCCCCCccCCCCeEEEE
Q 003090 414 EDSSSNAKFIELGALSRLTSLHIHIPEGKIMPSDMSFQNLTSFSIA 459 (848)
Q Consensus 414 ~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~ 459 (848)
+..+..+..+++|+.|++++|.+..+|..+. ++|+.|++.
T Consensus 161 -----~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~-~~L~~L~l~ 200 (330)
T 1xku_A 161 -----GIENGAFQGMKKLSYIRIADTNITTIPQGLP-PSLTELHLD 200 (330)
T ss_dssp -----GBCTTGGGGCTTCCEEECCSSCCCSCCSSCC-TTCSEEECT
T ss_pred -----CcChhhccCCCCcCEEECCCCccccCCcccc-ccCCEEECC
Confidence 1245678899999999999999988876643 666666665
No 50
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.82 E-value=1.9e-19 Score=190.78 Aligned_cols=136 Identities=23% Similarity=0.330 Sum_probs=109.9
Q ss_pred cCCceeEEEccCcccccccccCCCCCCCCCCCCCCCCCchhhhcccCcEEEccCccccCCchhhccccCCCEEEccCCCC
Q 003090 277 GMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLPSSLSFLINLRTLRLHDRRIQGDLSLIGELSGLEILDLSESDV 356 (848)
Q Consensus 277 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~~i~~l~~L~~L~l~~~~l 356 (848)
...+++.|++++ +.+.. +|..+.++++|++|++++|.+...+..++++++|++|++++|.+
T Consensus 79 ~~~~l~~L~L~~--------------n~l~~-----lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l 139 (328)
T 4fcg_A 79 TQPGRVALELRS--------------VPLPQ-----FPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPL 139 (328)
T ss_dssp TSTTCCEEEEES--------------SCCSS-----CCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCC
T ss_pred cccceeEEEccC--------------CCchh-----cChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCcc
Confidence 467899999999 88886 99999999999999999998886678899999999999999999
Q ss_pred cccChhhccCCcccEEeccCCccccccChhhhhc---------cccccEEeccccccccccccccccccCcccchhhhcc
Q 003090 357 SEIPVSFGRLSHLRLLDLTGCYILELIPRGVLSR---------LRKLEELYMSHSFRHWQFESESEEDSSSNAKFIELGA 427 (848)
Q Consensus 357 ~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~l~~---------l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 427 (848)
+.+|..++++++|++|++++|...+.+|.. ++. +++|++|++++|.+. . .+..++.
T Consensus 140 ~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~-~~~~~~~~~~~~l~~L~~L~L~~n~l~-~-------------lp~~l~~ 204 (328)
T 4fcg_A 140 RALPASIASLNRLRELSIRACPELTELPEP-LASTDASGEHQGLVNLQSLRLEWTGIR-S-------------LPASIAN 204 (328)
T ss_dssp CCCCGGGGGCTTCCEEEEEEETTCCCCCSC-SEEEC-CCCEEESTTCCEEEEEEECCC-C-------------CCGGGGG
T ss_pred ccCcHHHhcCcCCCEEECCCCCCccccChh-HhhccchhhhccCCCCCEEECcCCCcC-c-------------chHhhcC
Confidence 999999999999999999999888888886 443 666666666666554 2 3445666
Q ss_pred cCCCcEEEeeccCCCCCCC
Q 003090 428 LSRLTSLHIHIPEGKIMPS 446 (848)
Q Consensus 428 l~~L~~L~l~~~~~~~~~~ 446 (848)
+++|+.|++++|.+..+|.
T Consensus 205 l~~L~~L~L~~N~l~~l~~ 223 (328)
T 4fcg_A 205 LQNLKSLKIRNSPLSALGP 223 (328)
T ss_dssp CTTCCEEEEESSCCCCCCG
T ss_pred CCCCCEEEccCCCCCcCch
Confidence 6666666666665554443
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.81 E-value=6.3e-20 Score=197.44 Aligned_cols=192 Identities=20% Similarity=0.180 Sum_probs=151.8
Q ss_pred ceeeecCCCcccCCcccccccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCCCCch
Q 003090 237 GISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLPSS 316 (848)
Q Consensus 237 ~l~l~~n~l~~lp~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp~~ 316 (848)
..+.+++.++.+|..+. ++|++|++++|.+..++...|.++++|++|++++ +.+... .|..
T Consensus 35 ~c~~~~~~l~~iP~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~--------------n~l~~~----~~~~ 95 (353)
T 2z80_A 35 ICKGSSGSLNSIPSGLT-EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTS--------------NGINTI----EEDS 95 (353)
T ss_dssp EEECCSTTCSSCCTTCC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT--------------SCCCEE----CTTT
T ss_pred EeeCCCCCccccccccc-ccCcEEECCCCcCcccCHHHhccCCCCCEEECCC--------------CccCcc----CHhh
Confidence 36777888888887664 5899999999988888886678899999999998 777773 4567
Q ss_pred hhhcccCcEEEccCccccCCch-hhccccCCCEEEccCCCCcccCh--hhccCCcccEEeccCCccccccChhhhhcccc
Q 003090 317 LSFLINLRTLRLHDRRIQGDLS-LIGELSGLEILDLSESDVSEIPV--SFGRLSHLRLLDLTGCYILELIPRGVLSRLRK 393 (848)
Q Consensus 317 ~~~l~~L~~L~L~~~~~~~~~~-~i~~l~~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~l~~~~~~~~~p~~~l~~l~~ 393 (848)
+..+++|++|++++|.+...+. .++++++|++|++++|.++.+|. .+.++++|++|++++|.....++...++++++
T Consensus 96 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~ 175 (353)
T 2z80_A 96 FSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTF 175 (353)
T ss_dssp TTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCE
T ss_pred cCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCC
Confidence 8889999999999998887774 48889999999999999988886 68889999999999886566665544788999
Q ss_pred ccEEeccccccccccccccccccCcccchhhhcccCCCcEEEeeccCCCCCCCCC--ccCCCCeEEEEe
Q 003090 394 LEELYMSHSFRHWQFESESEEDSSSNAKFIELGALSRLTSLHIHIPEGKIMPSDM--SFQNLTSFSIAI 460 (848)
Q Consensus 394 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~ 460 (848)
|++|++++|.+... .+..++.+++|++|++++|.+..++... .+++|+.|++..
T Consensus 176 L~~L~l~~n~l~~~-------------~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~ 231 (353)
T 2z80_A 176 LEELEIDASDLQSY-------------EPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRD 231 (353)
T ss_dssp EEEEEEEETTCCEE-------------CTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEES
T ss_pred CCEEECCCCCcCcc-------------CHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCC
Confidence 99999998887654 4567788888888888888766555433 355666666653
No 52
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.80 E-value=1e-20 Score=212.00 Aligned_cols=164 Identities=16% Similarity=0.108 Sum_probs=107.2
Q ss_pred cccceeecccCcCcccC-hHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCCCCchhhhcccCcEEEccCccc
Q 003090 255 PKLQALFLQENSPLAIP-DRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLPSSLSFLINLRTLRLHDRRI 333 (848)
Q Consensus 255 ~~L~~L~l~~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~ 333 (848)
++|++|++++|.+...+ ..++..+++|++|++++ +.+.......++..+..+++|++|++++|.+
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~--------------~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 68 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDD--------------CGLTEARCKDISSALRVNPALAELNLRSNEL 68 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEES--------------SCCCHHHHHHHHHHHHTCTTCCEEECTTCCC
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccC--------------CCCCHHHHHHHHHHHHhCCCcCEEeCCCCcC
Confidence 56788888888765543 23467788888888888 5555310001566677778888888888865
Q ss_pred cCCc-hhh-cccc----CCCEEEccCCCCc-----ccChhhccCCcccEEeccCCccccccChhh----hhccccccEEe
Q 003090 334 QGDL-SLI-GELS----GLEILDLSESDVS-----EIPVSFGRLSHLRLLDLTGCYILELIPRGV----LSRLRKLEELY 398 (848)
Q Consensus 334 ~~~~-~~i-~~l~----~L~~L~l~~~~l~-----~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~----l~~l~~L~~L~ 398 (848)
.... ..+ ..+. +|++|++++|.++ .+|..+.++++|++|++++|......+..+ ....++|++|+
T Consensus 69 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~ 148 (461)
T 1z7x_W 69 GDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQ 148 (461)
T ss_dssp HHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred ChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEE
Confidence 5432 222 3344 6888888888877 457778888888888888876543323321 12245688888
Q ss_pred ccccccccccccccccccCcccchhhhcccCCCcEEEeeccCC
Q 003090 399 MSHSFRHWQFESESEEDSSSNAKFIELGALSRLTSLHIHIPEG 441 (848)
Q Consensus 399 l~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~ 441 (848)
+++|.+... ........+..+++|++|++++|.+
T Consensus 149 L~~n~l~~~---------~~~~l~~~l~~~~~L~~L~L~~n~i 182 (461)
T 1z7x_W 149 LEYCSLSAA---------SCEPLASVLRAKPDFKELTVSNNDI 182 (461)
T ss_dssp CTTSCCBGG---------GHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred CCCCCCCHH---------HHHHHHHHHhhCCCCCEEECcCCCc
Confidence 888876543 1112345666778888888877754
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.79 E-value=1.1e-19 Score=191.39 Aligned_cols=194 Identities=21% Similarity=0.152 Sum_probs=157.8
Q ss_pred CceeeecCCCcccCCcccccccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCCCCc
Q 003090 236 TGISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLPS 315 (848)
Q Consensus 236 ~~l~l~~n~l~~lp~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp~ 315 (848)
++++.+++.++.+|..+. +++++|++++|.+..+|..+|.++++|++|++++ +.+... ...|.
T Consensus 10 ~~l~c~~~~l~~ip~~~~-~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~--------------n~l~~~--~~~~~ 72 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIP-SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSS--------------NGLSFK--GCCSQ 72 (306)
T ss_dssp TEEECCSSCCSSCCSCCC-TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCS--------------SCCCEE--EEEEH
T ss_pred CEEEcCCCCcccCCCCCC-CCCCEEECCCCccCccCHhHhhccccCCEEECCC--------------CccCcc--cCccc
Confidence 567888889999998664 6899999999999999998889999999999999 777641 00267
Q ss_pred hhhhcccCcEEEccCccccCCchhhccccCCCEEEccCCCCcccCh--hhccCCcccEEeccCCccccccChhhhhcccc
Q 003090 316 SLSFLINLRTLRLHDRRIQGDLSLIGELSGLEILDLSESDVSEIPV--SFGRLSHLRLLDLTGCYILELIPRGVLSRLRK 393 (848)
Q Consensus 316 ~~~~l~~L~~L~L~~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~l~~~~~~~~~p~~~l~~l~~ 393 (848)
.+..+++|++|++++|.+...+..+..+++|++|++++|.++.++. .+..+++|++|++++|......+.. +..+++
T Consensus 73 ~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~ 151 (306)
T 2z66_A 73 SDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI-FNGLSS 151 (306)
T ss_dssp HHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTT-TTTCTT
T ss_pred ccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhh-cccCcC
Confidence 7888999999999999888777778999999999999999997764 7889999999999998776655555 789999
Q ss_pred ccEEeccccccccccccccccccCcccchhhhcccCCCcEEEeeccCCCCCCC-CC-ccCCCCeEEEE
Q 003090 394 LEELYMSHSFRHWQFESESEEDSSSNAKFIELGALSRLTSLHIHIPEGKIMPS-DM-SFQNLTSFSIA 459 (848)
Q Consensus 394 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~ 459 (848)
|++|++++|.+... ..+..+..+++|+.|++++|.+..++. .+ .+++|+.|++.
T Consensus 152 L~~L~l~~n~l~~~------------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 207 (306)
T 2z66_A 152 LEVLKMAGNSFQEN------------FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 207 (306)
T ss_dssp CCEEECTTCEEGGG------------EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT
T ss_pred CCEEECCCCccccc------------cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECC
Confidence 99999999987652 134567889999999999998876643 33 55666666654
No 54
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.79 E-value=3e-19 Score=188.14 Aligned_cols=172 Identities=20% Similarity=0.244 Sum_probs=132.0
Q ss_pred cccceeecccCcCc---ccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCCCCchhhhcccCcEEEccCc
Q 003090 255 PKLQALFLQENSPL---AIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLPSSLSFLINLRTLRLHDR 331 (848)
Q Consensus 255 ~~L~~L~l~~~~~~---~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp~~~~~l~~L~~L~L~~~ 331 (848)
.+++.|++++|.+. .+|.. +.++++|++|+++++ +.+.+. +|..++++++|++|++++|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~-l~~l~~L~~L~L~~~-------------n~l~~~----~p~~l~~l~~L~~L~Ls~n 111 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSS-LANLPYLNFLYIGGI-------------NNLVGP----IPPAIAKLTQLHYLYITHT 111 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGG-GGGCTTCSEEEEEEE-------------TTEESC----CCGGGGGCTTCSEEEEEEE
T ss_pred ceEEEEECCCCCccCCcccChh-HhCCCCCCeeeCCCC-------------Cccccc----CChhHhcCCCCCEEECcCC
Confidence 57888888888766 46665 578889999999832 566654 8888888999999999988
Q ss_pred cccC-CchhhccccCCCEEEccCCCCc-ccChhhccCCcccEEeccCCccccccChhhhhccc-cccEEecccccccccc
Q 003090 332 RIQG-DLSLIGELSGLEILDLSESDVS-EIPVSFGRLSHLRLLDLTGCYILELIPRGVLSRLR-KLEELYMSHSFRHWQF 408 (848)
Q Consensus 332 ~~~~-~~~~i~~l~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~l~~l~-~L~~L~l~~~~~~~~~ 408 (848)
.+.+ .+..++++++|++|++++|.++ .+|..++++++|++|++++|...+.+|.. +++++ +|++|++++|.+.+.
T Consensus 112 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N~l~~~- 189 (313)
T 1ogq_A 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLTGK- 189 (313)
T ss_dssp CCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEEEE-
T ss_pred eeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcCCeeecc-
Confidence 8774 4577888899999999998888 78888888999999999888877778887 78887 889999988887755
Q ss_pred ccccccccCcccchhhhcccCCCcEEEeeccCCCCCCC-CC-ccCCCCeEEEE
Q 003090 409 ESESEEDSSSNAKFIELGALSRLTSLHIHIPEGKIMPS-DM-SFQNLTSFSIA 459 (848)
Q Consensus 409 ~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~ 459 (848)
.+..+..++ |+.|++++|.+...+. .+ .+++|+.|++.
T Consensus 190 ------------~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 229 (313)
T 1ogq_A 190 ------------IPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLA 229 (313)
T ss_dssp ------------CCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECC
T ss_pred ------------CChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECC
Confidence 445666666 8888888887664332 22 55556555554
No 55
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.78 E-value=8.3e-19 Score=188.66 Aligned_cols=194 Identities=22% Similarity=0.278 Sum_probs=162.4
Q ss_pred cCCchhHHHHHHHhccCCCceeeecCCCcccCCc-c-cccccceeecccCcCcccChHHHccCCceeEEEccCccccccc
Q 003090 218 QTPSITKIQYEIAGWLDLTGISLMFNDIHEVPDE-L-ECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFS 295 (848)
Q Consensus 218 ~~~~~~~l~~~i~~~~~l~~l~l~~n~l~~lp~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~ 295 (848)
....+..++..+.. .++.|++++|.+..+|.. + .+++|++|++++|.+..++...|.++++|++|++++
T Consensus 39 ~~~~l~~iP~~~~~--~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~------- 109 (353)
T 2z80_A 39 SSGSLNSIPSGLTE--AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY------- 109 (353)
T ss_dssp CSTTCSSCCTTCCT--TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS-------
T ss_pred CCCCcccccccccc--cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCC-------
Confidence 34556666665543 679999999999999873 4 899999999999999998877789999999999999
Q ss_pred ccCCCCCCCCCCCCCCCCCch-hhhcccCcEEEccCccccCCch--hhccccCCCEEEccCC-CCccc-ChhhccCCccc
Q 003090 296 VRFPFLFPPLPSSPLFLLPSS-LSFLINLRTLRLHDRRIQGDLS--LIGELSGLEILDLSES-DVSEI-PVSFGRLSHLR 370 (848)
Q Consensus 296 ~~~~~~~~~l~~~~~~~lp~~-~~~l~~L~~L~L~~~~~~~~~~--~i~~l~~L~~L~l~~~-~l~~l-p~~i~~L~~L~ 370 (848)
+.+.. +|.. ++.+++|++|++++|.+...+. .+.++++|++|++++| .+..+ |..++++++|+
T Consensus 110 -------n~l~~-----~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 177 (353)
T 2z80_A 110 -------NYLSN-----LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLE 177 (353)
T ss_dssp -------SCCSS-----CCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEE
T ss_pred -------CcCCc-----CCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCC
Confidence 88887 6665 8999999999999998887665 7899999999999999 57766 45789999999
Q ss_pred EEeccCCccccccChhhhhccccccEEeccccccccccccccccccCcccchhhhcccCCCcEEEeeccCCCCCCC
Q 003090 371 LLDLTGCYILELIPRGVLSRLRKLEELYMSHSFRHWQFESESEEDSSSNAKFIELGALSRLTSLHIHIPEGKIMPS 446 (848)
Q Consensus 371 ~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~ 446 (848)
+|++++|...+..|.. +.++++|++|++++|.+... ....+..+++|+.|++++|.+..++.
T Consensus 178 ~L~l~~n~l~~~~~~~-l~~l~~L~~L~l~~n~l~~~-------------~~~~~~~~~~L~~L~L~~n~l~~~~~ 239 (353)
T 2z80_A 178 ELEIDASDLQSYEPKS-LKSIQNVSHLILHMKQHILL-------------LEIFVDVTSSVECLELRDTDLDTFHF 239 (353)
T ss_dssp EEEEEETTCCEECTTT-TTTCSEEEEEEEECSCSTTH-------------HHHHHHHTTTEEEEEEESCBCTTCCC
T ss_pred EEECCCCCcCccCHHH-HhccccCCeecCCCCccccc-------------hhhhhhhcccccEEECCCCccccccc
Confidence 9999998877666766 89999999999999987543 22335568999999999999876553
No 56
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.78 E-value=1.6e-18 Score=192.42 Aligned_cols=241 Identities=23% Similarity=0.284 Sum_probs=191.4
Q ss_pred CceeeecCCCcccCCcccccccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCCCCc
Q 003090 236 TGISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLPS 315 (848)
Q Consensus 236 ~~l~l~~n~l~~lp~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp~ 315 (848)
..++.+++.+..+|..+. ++++.|++++|.+..++...|.++++|++|++++ +.+... .+.
T Consensus 46 ~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~--------------n~i~~i----~~~ 106 (440)
T 3zyj_A 46 SKVICVRKNLREVPDGIS-TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSR--------------NHIRTI----EIG 106 (440)
T ss_dssp CEEECCSCCCSSCCSCCC-TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCS--------------SCCCEE----CGG
T ss_pred CEEEeCCCCcCcCCCCCC-CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCC--------------CcCCcc----Chh
Confidence 467788889999998775 7899999999999999877789999999999999 888873 457
Q ss_pred hhhhcccCcEEEccCccccCCc-hhhccccCCCEEEccCCCCcccCh-hhccCCcccEEeccCCccccccChhhhhcccc
Q 003090 316 SLSFLINLRTLRLHDRRIQGDL-SLIGELSGLEILDLSESDVSEIPV-SFGRLSHLRLLDLTGCYILELIPRGVLSRLRK 393 (848)
Q Consensus 316 ~~~~l~~L~~L~L~~~~~~~~~-~~i~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~~l~~l~~ 393 (848)
.+..+++|++|+|++|.+...+ ..+..+++|++|++++|.++.+|. .+.++++|++|++++|.....++...+.++++
T Consensus 107 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~ 186 (440)
T 3zyj_A 107 AFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSN 186 (440)
T ss_dssp GGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSS
T ss_pred hccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccc
Confidence 7999999999999999888777 578999999999999999998776 68899999999999988888888877899999
Q ss_pred ccEEeccccccccccccccccccCcccchhhhcccCCCcEEEeeccCCCCCCCC-C-ccCCCCeEEEEeCCCCCCCCCcc
Q 003090 394 LEELYMSHSFRHWQFESESEEDSSSNAKFIELGALSRLTSLHIHIPEGKIMPSD-M-SFQNLTSFSIAIGDLEERPLSDF 471 (848)
Q Consensus 394 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~~~~l 471 (848)
|++|++++|.+... ..+..+++|+.|++++|.+..++.. + .+++|+.|++.
T Consensus 187 L~~L~L~~n~l~~~---------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~------------ 239 (440)
T 3zyj_A 187 LRYLNLAMCNLREI---------------PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMI------------ 239 (440)
T ss_dssp CCEEECTTSCCSSC---------------CCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECT------------
T ss_pred cCeecCCCCcCccc---------------cccCCCcccCEEECCCCccCccChhhhccCccCCEEECC------------
Confidence 99999999987632 3478899999999999988866443 3 56666666554
Q ss_pred cceEEecccccccccccCccccchhhHHHHHHHHHhhcceeeeccccccccccccccccCCCCCcEEEEecCCCceeecc
Q 003090 472 IGLFLQKFKKRCSRAMGLSQDMRISALHSWIKNLLLRSEILALAEVNYFENIVSDLANDGFNELMFLVIFRCNEMKYLLN 551 (848)
Q Consensus 472 ~~l~l~~~~~~c~~~~~l~~~~~l~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~l~~ 551 (848)
++.........+ ..+++|+.|+++++. ++.++
T Consensus 240 --------------------------------------------~n~l~~~~~~~~--~~l~~L~~L~L~~N~-l~~~~- 271 (440)
T 3zyj_A 240 --------------------------------------------QSQIQVIERNAF--DNLQSLVEINLAHNN-LTLLP- 271 (440)
T ss_dssp --------------------------------------------TCCCCEECTTSS--TTCTTCCEEECTTSC-CCCCC-
T ss_pred --------------------------------------------CCceeEEChhhh--cCCCCCCEEECCCCC-CCccC-
Confidence 222211112222 466888999998874 33321
Q ss_pred cccccccccCCCccEEeccccc
Q 003090 552 SLERTLRVTLHKLEWLFIRENQ 573 (848)
Q Consensus 552 ~~~~~~~~~~p~L~~L~l~~~~ 573 (848)
......+++|+.|+|++++
T Consensus 272 ---~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 272 ---HDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp ---TTTTSSCTTCCEEECCSSC
T ss_pred ---hhHhccccCCCEEEcCCCC
Confidence 1234567899999999886
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.78 E-value=1.4e-18 Score=193.42 Aligned_cols=241 Identities=23% Similarity=0.233 Sum_probs=190.3
Q ss_pred CceeeecCCCcccCCcccccccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCCCCc
Q 003090 236 TGISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLPS 315 (848)
Q Consensus 236 ~~l~l~~n~l~~lp~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp~ 315 (848)
..++.+++.+..+|..+. +++++|++++|.+..++...|.++++|++|++++ +.+... .|.
T Consensus 57 ~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~--------------n~i~~~----~~~ 117 (452)
T 3zyi_A 57 SKVVCTRRGLSEVPQGIP-SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGR--------------NSIRQI----EVG 117 (452)
T ss_dssp CEEECCSSCCSSCCSCCC-TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCS--------------SCCCEE----CTT
T ss_pred cEEEECCCCcCccCCCCC-CCccEEECcCCcCceECHHHcCCCCCCCEEECCC--------------CccCCc----Chh
Confidence 457778888999998764 6899999999999988877789999999999999 888774 557
Q ss_pred hhhhcccCcEEEccCccccCCc-hhhccccCCCEEEccCCCCcccCh-hhccCCcccEEeccCCccccccChhhhhcccc
Q 003090 316 SLSFLINLRTLRLHDRRIQGDL-SLIGELSGLEILDLSESDVSEIPV-SFGRLSHLRLLDLTGCYILELIPRGVLSRLRK 393 (848)
Q Consensus 316 ~~~~l~~L~~L~L~~~~~~~~~-~~i~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~~l~~l~~ 393 (848)
.+..+++|++|+|++|.+...+ ..+..+++|++|++++|.++.+|. .+.++++|++|++++|...+.++...+.++++
T Consensus 118 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~ 197 (452)
T 3zyi_A 118 AFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFN 197 (452)
T ss_dssp TTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTT
T ss_pred hccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCC
Confidence 8999999999999999888777 558899999999999999998876 68899999999999988888898877899999
Q ss_pred ccEEeccccccccccccccccccCcccchhhhcccCCCcEEEeeccCCCCCCCC-C-ccCCCCeEEEEeCCCCCCCCCcc
Q 003090 394 LEELYMSHSFRHWQFESESEEDSSSNAKFIELGALSRLTSLHIHIPEGKIMPSD-M-SFQNLTSFSIAIGDLEERPLSDF 471 (848)
Q Consensus 394 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~~~~l 471 (848)
|++|++++|.+... ..+..+++|+.|++++|.+..++.. + .+++|+.|++.
T Consensus 198 L~~L~L~~n~l~~~---------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~------------ 250 (452)
T 3zyi_A 198 LKYLNLGMCNIKDM---------------PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVM------------ 250 (452)
T ss_dssp CCEEECTTSCCSSC---------------CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECT------------
T ss_pred CCEEECCCCccccc---------------ccccccccccEEECcCCcCcccCcccccCccCCCEEEeC------------
Confidence 99999999987642 3478889999999999988766443 2 55555555554
Q ss_pred cceEEecccccccccccCccccchhhHHHHHHHHHhhcceeeeccccccccccccccccCCCCCcEEEEecCCCceeecc
Q 003090 472 IGLFLQKFKKRCSRAMGLSQDMRISALHSWIKNLLLRSEILALAEVNYFENIVSDLANDGFNELMFLVIFRCNEMKYLLN 551 (848)
Q Consensus 472 ~~l~l~~~~~~c~~~~~l~~~~~l~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~l~~ 551 (848)
++......+..+ ..+++|+.|+++++. ++.++
T Consensus 251 --------------------------------------------~n~l~~~~~~~~--~~l~~L~~L~L~~N~-l~~~~- 282 (452)
T 3zyi_A 251 --------------------------------------------NSQVSLIERNAF--DGLASLVELNLAHNN-LSSLP- 282 (452)
T ss_dssp --------------------------------------------TSCCCEECTTTT--TTCTTCCEEECCSSC-CSCCC-
T ss_pred --------------------------------------------CCcCceECHHHh--cCCCCCCEEECCCCc-CCccC-
Confidence 332222112222 467889999998884 44331
Q ss_pred cccccccccCCCccEEeccccc
Q 003090 552 SLERTLRVTLHKLEWLFIRENQ 573 (848)
Q Consensus 552 ~~~~~~~~~~p~L~~L~l~~~~ 573 (848)
......+++|++|++++++
T Consensus 283 ---~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 283 ---HDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp ---TTSSTTCTTCCEEECCSSC
T ss_pred ---hHHhccccCCCEEEccCCC
Confidence 1234567899999999886
No 58
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.78 E-value=7.6e-20 Score=212.15 Aligned_cols=404 Identities=16% Similarity=0.131 Sum_probs=225.8
Q ss_pred cccccceeecccCcCccc-ChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCCCCchhhhcccCcEEEccCc
Q 003090 253 ECPKLQALFLQENSPLAI-PDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLPSSLSFLINLRTLRLHDR 331 (848)
Q Consensus 253 ~~~~L~~L~l~~~~~~~~-~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp~~~~~l~~L~~L~L~~~ 331 (848)
.+++|++|++++|.+... +..+...+++|++|++++|. .+.... ++..+..+++|++|++++|
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~-------------~~~~~~---l~~~~~~~~~L~~L~L~~~ 166 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE-------------GFSTDG---LAAIAATCRNLKELDLRES 166 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCE-------------EEEHHH---HHHHHHHCTTCCEEECTTC
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcC-------------CCCHHH---HHHHHHhCCCCCEEeCcCC
Confidence 467788888887754432 22333367788888888741 222110 3344457788888888887
Q ss_pred cccCCc-hhh----ccccCCCEEEccCCC--Cc--ccChhhccCCcccEEeccCCccccccChhhhhccccccEEecccc
Q 003090 332 RIQGDL-SLI----GELSGLEILDLSESD--VS--EIPVSFGRLSHLRLLDLTGCYILELIPRGVLSRLRKLEELYMSHS 402 (848)
Q Consensus 332 ~~~~~~-~~i----~~l~~L~~L~l~~~~--l~--~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~ 402 (848)
.+.... ..+ ..+++|++|++++|. +. .++.-+.++++|++|++++|.....+|.. +.++++|++|++..+
T Consensus 167 ~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~-~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 167 DVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATL-LQRAPQLEELGTGGY 245 (594)
T ss_dssp EEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHH-HHHCTTCSEEECSBC
T ss_pred ccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHH-HhcCCcceEcccccc
Confidence 644422 222 356688888888775 32 33333455788888888887555556555 677888888876654
Q ss_pred ccccccccccccccCcccchhhhcccCCCcEE-EeeccCCCCCCCCC-ccCCCCeEEEEeCCCCCCCCCcccceEEeccc
Q 003090 403 FRHWQFESESEEDSSSNAKFIELGALSRLTSL-HIHIPEGKIMPSDM-SFQNLTSFSIAIGDLEERPLSDFIGLFLQKFK 480 (848)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L-~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~ 480 (848)
...-. .......+..+.++++|+.| .+.......++... .+++|+.|++..+...
T Consensus 246 ~~~~~-------~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~---------------- 302 (594)
T 2p1m_B 246 TAEVR-------PDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQ---------------- 302 (594)
T ss_dssp CCCCC-------HHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCC----------------
T ss_pred cCccc-------hhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCC----------------
Confidence 32100 00111244466777777777 33333333333333 5677777777533210
Q ss_pred ccccccccCccccchhhHHHHHHHHHhhcceeeeccccccccccccccccCCCCCcEEEEecC--------CCceeeccc
Q 003090 481 KRCSRAMGLSQDMRISALHSWIKNLLLRSEILALAEVNYFENIVSDLANDGFNELMFLVIFRC--------NEMKYLLNS 552 (848)
Q Consensus 481 ~~c~~~~~l~~~~~l~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~~~--------~~l~~l~~~ 552 (848)
-..+. .+...+++|+.|.+.++.....+. .+ ...+++|++|++.+| ..+.. .
T Consensus 303 --------------~~~l~-~~~~~~~~L~~L~l~~~~~~~~l~-~l-~~~~~~L~~L~L~~~~~~g~~~~~~l~~---~ 362 (594)
T 2p1m_B 303 --------------SYDLV-KLLCQCPKLQRLWVLDYIEDAGLE-VL-ASTCKDLRELRVFPSEPFVMEPNVALTE---Q 362 (594)
T ss_dssp --------------HHHHH-HHHTTCTTCCEEEEEGGGHHHHHH-HH-HHHCTTCCEEEEECSCTTCSSCSSCCCH---H
T ss_pred --------------HHHHH-HHHhcCCCcCEEeCcCccCHHHHH-HH-HHhCCCCCEEEEecCcccccccCCCCCH---H
Confidence 00111 111224778888888773211111 11 124788999999654 22221 1
Q ss_pred ccccccccCCCccEEecccccccccccccccccccCCCcceEEEe-----cCchhhHh------hhHHHHHhhccCcEEE
Q 003090 553 LERTLRVTLHKLEWLFIRENQNFVEICHGQLPAGCLSNVKRSDVV-----DCGSILKI------LLSHLVQSFQNLQRLR 621 (848)
Q Consensus 553 ~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~l~~L~~L~l~-----~c~~l~~~------l~~~~~~~l~~L~~L~ 621 (848)
........+|+|++|.+ +|.+++......+ ...+|+|+.|++. +|..+ .. ++. ++..+++|++|+
T Consensus 363 ~l~~l~~~~~~L~~L~~-~~~~l~~~~~~~l-~~~~~~L~~L~L~~~~~~~~~~l-~~~~~~~~~~~-l~~~~~~L~~L~ 438 (594)
T 2p1m_B 363 GLVSVSMGCPKLESVLY-FCRQMTNAALITI-ARNRPNMTRFRLCIIEPKAPDYL-TLEPLDIGFGA-IVEHCKDLRRLS 438 (594)
T ss_dssp HHHHHHHHCTTCCEEEE-EESCCCHHHHHHH-HHHCTTCCEEEEEESSTTCCCTT-TCCCTHHHHHH-HHHHCTTCCEEE
T ss_pred HHHHHHHhchhHHHHHH-hcCCcCHHHHHHH-HhhCCCcceeEeecccCCCcccc-cCCchhhHHHH-HHhhCCCccEEe
Confidence 11112234799999955 4445543211111 1147899999999 67777 52 222 347789999999
Q ss_pred EeccCCceeeeecccccccccccc-ccCCcCEEecCCCccccccccCCCcc-ccccCccEEEeecCccccccccCccccc
Q 003090 622 VYSCGLLVSVFEIERVNIAKEETE-LFSSLEKLTLWDLPRMTDIWKGDTQF-VSLHNLKKVRVEECDELRQVFPANFGKK 699 (848)
Q Consensus 622 l~~c~~l~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~c~~L~~l~~~~~~l-~~l~~L~~L~i~~C~~L~~~~p~~~~~~ 699 (848)
+++ .++.... ..+. .+++|++|++++|. +..... ..+ ..+++|++|++++|+. ++..+
T Consensus 439 L~~--~l~~~~~--------~~l~~~~~~L~~L~L~~~~-i~~~~~--~~l~~~~~~L~~L~L~~n~~-~~~~~------ 498 (594)
T 2p1m_B 439 LSG--LLTDKVF--------EYIGTYAKKMEMLSVAFAG-DSDLGM--HHVLSGCDSLRKLEIRDCPF-GDKAL------ 498 (594)
T ss_dssp CCS--SCCHHHH--------HHHHHHCTTCCEEEEESCC-SSHHHH--HHHHHHCTTCCEEEEESCSC-CHHHH------
T ss_pred ecC--cccHHHH--------HHHHHhchhccEeeccCCC-CcHHHH--HHHHhcCCCcCEEECcCCCC-cHHHH------
Confidence 966 3332210 1222 37899999999886 322111 011 5589999999999974 33100
Q ss_pred cccceeeeccccccceeeeecCCCCCCCCCCCCccEEEEecCCCCceecccchhhccccccEEEEe
Q 003090 700 AAAEEMVLYRKRRDQIHIHATTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVR 765 (848)
Q Consensus 700 ~~~~~l~l~~l~~~~l~i~~c~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~ 765 (848)
......+++|+.|++++|+. +.-........++.|+...+.
T Consensus 499 ------------------------~~~~~~l~~L~~L~l~~~~~-~~~~~~~l~~~lp~l~i~~~~ 539 (594)
T 2p1m_B 499 ------------------------LANASKLETMRSLWMSSCSV-SFGACKLLGQKMPKLNVEVID 539 (594)
T ss_dssp ------------------------HHTGGGGGGSSEEEEESSCC-BHHHHHHHHHHCTTEEEEEEC
T ss_pred ------------------------HHHHHhCCCCCEEeeeCCCC-CHHHHHHHHHhCCCCEEEEec
Confidence 01123568999999999975 221111122445566544443
No 59
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.76 E-value=6.6e-20 Score=205.48 Aligned_cols=179 Identities=16% Similarity=0.130 Sum_probs=102.6
Q ss_pred CCceeeecCCCcccCCc--c-cccccceeecccCcCcc-----cChHHHccCCceeEEEccCcccccccccCCCCCCCCC
Q 003090 235 LTGISLMFNDIHEVPDE--L-ECPKLQALFLQENSPLA-----IPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLP 306 (848)
Q Consensus 235 l~~l~l~~n~l~~lp~~--~-~~~~L~~L~l~~~~~~~-----~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~ 306 (848)
++.|++++|++...+.. + .+++|++|++++|.+.. ++. .+..+++|++|++++ +.+.
T Consensus 5 l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~-~l~~~~~L~~L~Ls~--------------n~l~ 69 (461)
T 1z7x_W 5 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISS-ALRVNPALAELNLRS--------------NELG 69 (461)
T ss_dssp EEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHH-HHHTCTTCCEEECTT--------------CCCH
T ss_pred ceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHH-HHHhCCCcCEEeCCC--------------CcCC
Confidence 45677777777643321 2 56777777777776552 233 345677777777777 5554
Q ss_pred CCCCCCCCchh-hhcc----cCcEEEccCccccCC-----chhhccccCCCEEEccCCCCccc-Chhhc-----cCCccc
Q 003090 307 SSPLFLLPSSL-SFLI----NLRTLRLHDRRIQGD-----LSLIGELSGLEILDLSESDVSEI-PVSFG-----RLSHLR 370 (848)
Q Consensus 307 ~~~~~~lp~~~-~~l~----~L~~L~L~~~~~~~~-----~~~i~~l~~L~~L~l~~~~l~~l-p~~i~-----~L~~L~ 370 (848)
.. .+..+ ..+. +|++|++++|.+... +..+..+++|++|++++|.+... +..+. ..++|+
T Consensus 70 ~~----~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~ 145 (461)
T 1z7x_W 70 DV----GVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLE 145 (461)
T ss_dssp HH----HHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCC
T ss_pred hH----HHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcce
Confidence 32 12222 2344 577777777765531 35667777777777777776521 22222 245677
Q ss_pred EEeccCCccccc----cChhhhhccccccEEeccccccccccccccccccCcccchhhhc-ccCCCcEEEeeccCCC
Q 003090 371 LLDLTGCYILEL----IPRGVLSRLRKLEELYMSHSFRHWQFESESEEDSSSNAKFIELG-ALSRLTSLHIHIPEGK 442 (848)
Q Consensus 371 ~L~l~~~~~~~~----~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~-~l~~L~~L~l~~~~~~ 442 (848)
+|++++|..... ++.. +..+++|++|++++|.+..... ......+. ..++|+.|++++|.++
T Consensus 146 ~L~L~~n~l~~~~~~~l~~~-l~~~~~L~~L~L~~n~i~~~~~---------~~l~~~l~~~~~~L~~L~L~~n~l~ 212 (461)
T 1z7x_W 146 KLQLEYCSLSAASCEPLASV-LRAKPDFKELTVSNNDINEAGV---------RVLCQGLKDSPCQLEALKLESCGVT 212 (461)
T ss_dssp EEECTTSCCBGGGHHHHHHH-HHHCTTCCEEECCSSBCHHHHH---------HHHHHHHHHSCCCCCEEECTTSCCB
T ss_pred EEECCCCCCCHHHHHHHHHH-HhhCCCCCEEECcCCCcchHHH---------HHHHHHHhcCCCCceEEEccCCCCc
Confidence 777777755442 2333 5666777777777776543200 00111121 2457777777777654
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.76 E-value=3.8e-18 Score=177.53 Aligned_cols=195 Identities=26% Similarity=0.326 Sum_probs=121.6
Q ss_pred CCCceeeecCCCcccCCc-c-cccccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCC-CCCCCC
Q 003090 234 DLTGISLMFNDIHEVPDE-L-ECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPP-LPSSPL 310 (848)
Q Consensus 234 ~l~~l~l~~n~l~~lp~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~-l~~~~~ 310 (848)
.++.|++++|.+..++.. + .+++|++|++++|.+..++...|.++++|++|++++ +. +...
T Consensus 33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~--------------n~~l~~~-- 96 (285)
T 1ozn_A 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD--------------NAQLRSV-- 96 (285)
T ss_dssp TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS--------------CTTCCCC--
T ss_pred CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC--------------CCCcccc--
Confidence 456667777776666643 2 566777777777666666544456667777777776 44 5542
Q ss_pred CCCCchhhhcccCcEEEccCccccCCc-hhhccccCCCEEEccCCCCcccChh-hccCCcccEEeccCCccccccChhhh
Q 003090 311 FLLPSSLSFLINLRTLRLHDRRIQGDL-SLIGELSGLEILDLSESDVSEIPVS-FGRLSHLRLLDLTGCYILELIPRGVL 388 (848)
Q Consensus 311 ~~lp~~~~~l~~L~~L~L~~~~~~~~~-~~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~~l 388 (848)
.|..+..+++|++|++++|.+...+ ..+.++++|++|++++|.++.+|.. ++++++|++|++++|... .+|...+
T Consensus 97 --~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~ 173 (285)
T 1ozn_A 97 --DPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVPERAF 173 (285)
T ss_dssp --CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-EECTTTT
T ss_pred --CHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccc-ccCHHHh
Confidence 2556666677777777777666553 4566677777777777766655543 566677777777765443 3444335
Q ss_pred hccccccEEeccccccccccccccccccCcccchhhhcccCCCcEEEeeccCCCCCCCCC--ccCCCCeEEEEe
Q 003090 389 SRLRKLEELYMSHSFRHWQFESESEEDSSSNAKFIELGALSRLTSLHIHIPEGKIMPSDM--SFQNLTSFSIAI 460 (848)
Q Consensus 389 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~ 460 (848)
..+++|++|++++|.+... .+..+..+++|+.|++++|.+..++... .+++|+.|++..
T Consensus 174 ~~l~~L~~L~l~~n~l~~~-------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 234 (285)
T 1ozn_A 174 RGLHSLDRLLLHQNRVAHV-------------HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLND 234 (285)
T ss_dssp TTCTTCCEEECCSSCCCEE-------------CTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCS
T ss_pred cCccccCEEECCCCccccc-------------CHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccC
Confidence 6667777777777666543 3445666667777777777666655432 556666666653
No 61
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.75 E-value=8.1e-19 Score=185.42 Aligned_cols=126 Identities=20% Similarity=0.125 Sum_probs=67.2
Q ss_pred ccccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCCCCchhhhcccCcEEEccCccc
Q 003090 254 CPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLPSSLSFLINLRTLRLHDRRI 333 (848)
Q Consensus 254 ~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~ 333 (848)
+++|++|++++|.+..++...|.++++|++|++++ +.+.+ .+. +..+++|++|++++|.+
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~--------------n~l~~-----~~~-~~~l~~L~~L~Ls~n~l 92 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS--------------NVLYE-----TLD-LESLSTLRTLDLNNNYV 92 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTT--------------SCCEE-----EEE-ETTCTTCCEEECCSSEE
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCC--------------CcCCc-----chh-hhhcCCCCEEECcCCcc
Confidence 44566666666655555554455666666666666 55544 332 55556666666666544
Q ss_pred cCCchhhccccCCCEEEccCCCCcccChhhccCCcccEEeccCCccccccChhhhhccccccEEecccccccc
Q 003090 334 QGDLSLIGELSGLEILDLSESDVSEIPVSFGRLSHLRLLDLTGCYILELIPRGVLSRLRKLEELYMSHSFRHW 406 (848)
Q Consensus 334 ~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~ 406 (848)
... ...++|++|++++|.++.++.. .+++|++|++++|......+.. ++.+++|++|++++|.+..
T Consensus 93 ~~l----~~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~ 158 (317)
T 3o53_A 93 QEL----LVGPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLD-EGCRSRVQYLDLKLNEIDT 158 (317)
T ss_dssp EEE----EECTTCCEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBC-TGGGSSEEEEECTTSCCCE
T ss_pred ccc----cCCCCcCEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchh-hhccCCCCEEECCCCCCCc
Confidence 322 2335566666666655544422 2455666666665443322222 4555666666666655543
No 62
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.75 E-value=2.7e-17 Score=187.58 Aligned_cols=262 Identities=17% Similarity=0.120 Sum_probs=192.4
Q ss_pred CCCceeeecCCCcccCCcccccccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCCC
Q 003090 234 DLTGISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLL 313 (848)
Q Consensus 234 ~l~~l~l~~n~l~~lp~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~l 313 (848)
.++.+++++|.++.+|..+. ++|++|++++|.+..+|. .+++|++|++++ |.++. +
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~--------------N~l~~-----l 96 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA----LPPELRTLEVSG--------------NQLTS-----L 96 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSCCCC----CCTTCCEEEECS--------------CCCSC-----C
T ss_pred CCcEEEecCCCcCccChhhC-CCCcEEEecCCCCCCCCC----cCCCCCEEEcCC--------------CcCCc-----C
Confidence 47889999999999998776 899999999999998886 578999999999 88887 7
Q ss_pred CchhhhcccCcEEEccCccccCCchhhccccCCCEEEccCCCCcccChhhccCCcccEEeccCCccccccChhhhhcccc
Q 003090 314 PSSLSFLINLRTLRLHDRRIQGDLSLIGELSGLEILDLSESDVSEIPVSFGRLSHLRLLDLTGCYILELIPRGVLSRLRK 393 (848)
Q Consensus 314 p~~~~~l~~L~~L~L~~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~l~~l~~ 393 (848)
|. .+++|++|++++|.+...+. .+.+|++|++++|.++.+|.. +++|++|++++|... .+|. .+.+
T Consensus 97 p~---~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~-~l~~----~~~~ 162 (622)
T 3g06_A 97 PV---LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLA-SLPA----LPSE 162 (622)
T ss_dssp CC---CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCS-CCCC----CCTT
T ss_pred CC---CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCC-CcCC----ccCC
Confidence 77 77899999999998777655 678999999999999999874 489999999998654 4664 3568
Q ss_pred ccEEeccccccccccccccccccCcccchhhhcccCCCcEEEeeccCCCCCCCCCccCCCCeEEEEeCCCCCCCCCcccc
Q 003090 394 LEELYMSHSFRHWQFESESEEDSSSNAKFIELGALSRLTSLHIHIPEGKIMPSDMSFQNLTSFSIAIGDLEERPLSDFIG 473 (848)
Q Consensus 394 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 473 (848)
|+.|++++|.+... + ..+++|+.|++++|.+..+|.. +++|+.|.+..+..
T Consensus 163 L~~L~L~~N~l~~l--------------~---~~~~~L~~L~Ls~N~l~~l~~~--~~~L~~L~L~~N~l---------- 213 (622)
T 3g06_A 163 LCKLWAYNNQLTSL--------------P---MLPSGLQELSVSDNQLASLPTL--PSELYKLWAYNNRL---------- 213 (622)
T ss_dssp CCEEECCSSCCSCC--------------C---CCCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCC----------
T ss_pred CCEEECCCCCCCCC--------------c---ccCCCCcEEECCCCCCCCCCCc--cchhhEEECcCCcc----------
Confidence 99999999987643 2 4568999999999999887764 47788887764432
Q ss_pred eEEecccccccccccCccccchhhHHHHHHHHHhhcceeeeccccccccccccccccCCCCCcEEEEecCCCceeecccc
Q 003090 474 LFLQKFKKRCSRAMGLSQDMRISALHSWIKNLLLRSEILALAEVNYFENIVSDLANDGFNELMFLVIFRCNEMKYLLNSL 553 (848)
Q Consensus 474 l~l~~~~~~c~~~~~l~~~~~l~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~l~~~~ 553 (848)
..+|. .+++|+.|+++++... .++ ..+++|+.|+++++. ++.++
T Consensus 214 ----------------------~~l~~----~~~~L~~L~Ls~N~L~-~lp-----~~l~~L~~L~Ls~N~-L~~lp--- 257 (622)
T 3g06_A 214 ----------------------TSLPA----LPSGLKELIVSGNRLT-SLP-----VLPSELKELMVSGNR-LTSLP--- 257 (622)
T ss_dssp ----------------------SSCCC----CCTTCCEEECCSSCCS-CCC-----CCCTTCCEEECCSSC-CSCCC---
T ss_pred ----------------------cccCC----CCCCCCEEEccCCccC-cCC-----CCCCcCcEEECCCCC-CCcCC---
Confidence 11110 0256777777766432 222 355778888887773 33331
Q ss_pred cccccccCCCccEEecccccccccccccccccccCCCcceEEEecCchhhHhhhH
Q 003090 554 ERTLRVTLHKLEWLFIRENQNFVEICHGQLPAGCLSNVKRSDVVDCGSILKILLS 608 (848)
Q Consensus 554 ~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~l~~ 608 (848)
. .+++|++|++++| +++.+. .....+++|+.|++++|+-- ...|.
T Consensus 258 ---~--~~~~L~~L~Ls~N-~L~~lp---~~l~~l~~L~~L~L~~N~l~-~~~~~ 302 (622)
T 3g06_A 258 ---M--LPSGLLSLSVYRN-QLTRLP---ESLIHLSSETTVNLEGNPLS-ERTLQ 302 (622)
T ss_dssp ---C--CCTTCCEEECCSS-CCCSCC---GGGGGSCTTCEEECCSCCCC-HHHHH
T ss_pred ---c--ccccCcEEeCCCC-CCCcCC---HHHhhccccCEEEecCCCCC-CcCHH
Confidence 1 4677788888777 455431 12345777778888776543 44433
No 63
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.74 E-value=1.3e-17 Score=173.48 Aligned_cols=193 Identities=20% Similarity=0.249 Sum_probs=160.9
Q ss_pred CceeeecCCCcccCCcccccccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCCCCc
Q 003090 236 TGISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLPS 315 (848)
Q Consensus 236 ~~l~l~~n~l~~lp~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp~ 315 (848)
+.++.+++.+..+|..+ .+++++|++++|.+..++...|..+++|++|++++ +.+... .|.
T Consensus 14 ~~~~c~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~--------------n~l~~~----~~~ 74 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI-PAASQRIFLHGNRISHVPAASFRACRNLTILWLHS--------------NVLARI----DAA 74 (285)
T ss_dssp CEEECCSSCCSSCCTTC-CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCS--------------SCCCEE----CTT
T ss_pred eEEEcCcCCcccCCcCC-CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCC--------------Ccccee----CHh
Confidence 46788888999998765 47899999999999999987789999999999999 888773 478
Q ss_pred hhhhcccCcEEEccCcc-ccCC-chhhccccCCCEEEccCCCCccc-ChhhccCCcccEEeccCCccccccChhhhhccc
Q 003090 316 SLSFLINLRTLRLHDRR-IQGD-LSLIGELSGLEILDLSESDVSEI-PVSFGRLSHLRLLDLTGCYILELIPRGVLSRLR 392 (848)
Q Consensus 316 ~~~~l~~L~~L~L~~~~-~~~~-~~~i~~l~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~~p~~~l~~l~ 392 (848)
.+..+++|++|++++|. +... +..+..+++|++|++++|.++.+ |..+.++++|++|++++|... .++...+++++
T Consensus 75 ~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~ 153 (285)
T 1ozn_A 75 AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLG 153 (285)
T ss_dssp TTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCT
T ss_pred hcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCccc-ccCHhHhccCC
Confidence 89999999999999997 5555 37889999999999999999976 566899999999999998765 45655488999
Q ss_pred cccEEeccccccccccccccccccCcccchhhhcccCCCcEEEeeccCCCCC-CCCC-ccCCCCeEEEEeC
Q 003090 393 KLEELYMSHSFRHWQFESESEEDSSSNAKFIELGALSRLTSLHIHIPEGKIM-PSDM-SFQNLTSFSIAIG 461 (848)
Q Consensus 393 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~-~~~~-~~~~L~~L~l~~~ 461 (848)
+|++|++++|.+... ....+..+++|+.|++++|.+..+ +..+ .+++|+.|++..+
T Consensus 154 ~L~~L~l~~n~l~~~-------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 211 (285)
T 1ozn_A 154 NLTHLFLHGNRISSV-------------PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211 (285)
T ss_dssp TCCEEECCSSCCCEE-------------CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CccEEECCCCccccc-------------CHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCC
Confidence 999999999988754 334588899999999999998766 4444 6777777777643
No 64
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.73 E-value=1.3e-17 Score=175.53 Aligned_cols=196 Identities=21% Similarity=0.234 Sum_probs=166.4
Q ss_pred CCCceeeecCCCcccCCcc--cccccceeecccCcCccc---ChHHHccCCceeEEEccCcccccccccCCCCCCCCCCC
Q 003090 234 DLTGISLMFNDIHEVPDEL--ECPKLQALFLQENSPLAI---PDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSS 308 (848)
Q Consensus 234 ~l~~l~l~~n~l~~lp~~~--~~~~L~~L~l~~~~~~~~---~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~ 308 (848)
.++.|++++|.+..+|... .+++|++|++++|.+..+ +..+ ..+++|++|++++ +.+..
T Consensus 29 ~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-~~~~~L~~L~Ls~--------------n~i~~- 92 (306)
T 2z66_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSD-FGTTSLKYLDLSF--------------NGVIT- 92 (306)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHH-HSCSCCCEEECCS--------------CSEEE-
T ss_pred CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccc-ccccccCEEECCC--------------Ccccc-
Confidence 5789999999999999864 899999999999987655 4554 5799999999999 77777
Q ss_pred CCCCCCchhhhcccCcEEEccCccccCCc--hhhccccCCCEEEccCCCCc-ccChhhccCCcccEEeccCCcccc-ccC
Q 003090 309 PLFLLPSSLSFLINLRTLRLHDRRIQGDL--SLIGELSGLEILDLSESDVS-EIPVSFGRLSHLRLLDLTGCYILE-LIP 384 (848)
Q Consensus 309 ~~~~lp~~~~~l~~L~~L~L~~~~~~~~~--~~i~~l~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~l~~~~~~~-~~p 384 (848)
+|..+..+++|++|++++|.+...+ ..+..+++|++|++++|.+. ..|..+..+++|++|++++|...+ .+|
T Consensus 93 ----l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 168 (306)
T 2z66_A 93 ----MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 168 (306)
T ss_dssp ----EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEEC
T ss_pred ----ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccch
Confidence 8888999999999999999887765 47899999999999999988 455668899999999999987765 466
Q ss_pred hhhhhccccccEEeccccccccccccccccccCcccchhhhcccCCCcEEEeeccCCCCCCCCC--ccCCCCeEEEEeCC
Q 003090 385 RGVLSRLRKLEELYMSHSFRHWQFESESEEDSSSNAKFIELGALSRLTSLHIHIPEGKIMPSDM--SFQNLTSFSIAIGD 462 (848)
Q Consensus 385 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~ 462 (848)
.. +..+++|++|++++|.+... .+..+..+++|+.|++++|.+..++... .+++|+.|++..+.
T Consensus 169 ~~-~~~l~~L~~L~Ls~n~l~~~-------------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 234 (306)
T 2z66_A 169 DI-FTELRNLTFLDLSQCQLEQL-------------SPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 234 (306)
T ss_dssp SC-CTTCTTCCEEECTTSCCCEE-------------CTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSC
T ss_pred hH-HhhCcCCCEEECCCCCcCCc-------------CHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCC
Confidence 66 89999999999999988764 4567888999999999999988877643 78899999998665
Q ss_pred C
Q 003090 463 L 463 (848)
Q Consensus 463 ~ 463 (848)
.
T Consensus 235 l 235 (306)
T 2z66_A 235 I 235 (306)
T ss_dssp C
T ss_pred C
Confidence 4
No 65
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.73 E-value=8e-17 Score=183.74 Aligned_cols=150 Identities=21% Similarity=0.173 Sum_probs=101.9
Q ss_pred cccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCCCCchhhhcccCcEEEccCcccc
Q 003090 255 PKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLPSSLSFLINLRTLRLHDRRIQ 334 (848)
Q Consensus 255 ~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~ 334 (848)
.+++.|++++|.+..+|..++ ++|++|++++ +.++. +|. .+++|++|++++|.+.
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~---~~L~~L~L~~--------------N~l~~-----lp~---~l~~L~~L~Ls~N~l~ 94 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP---AHITTLVIPD--------------NNLTS-----LPA---LPPELRTLEVSGNQLT 94 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC---TTCSEEEECS--------------CCCSC-----CCC---CCTTCCEEEECSCCCS
T ss_pred CCCcEEEecCCCcCccChhhC---CCCcEEEecC--------------CCCCC-----CCC---cCCCCCEEEcCCCcCC
Confidence 357788888888878877542 6788888888 77776 666 4677888888888766
Q ss_pred CCchhhccccCCCEEEccCCCCcccChhhccCCcccEEeccCCccccccChhhhhccccccEEecccccccccccccccc
Q 003090 335 GDLSLIGELSGLEILDLSESDVSEIPVSFGRLSHLRLLDLTGCYILELIPRGVLSRLRKLEELYMSHSFRHWQFESESEE 414 (848)
Q Consensus 335 ~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 414 (848)
..+. .+++|++|++++|.++.+|. .+.+|++|++++|.. ..+|.. +++|++|++++|.+...
T Consensus 95 ~lp~---~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~l-~~lp~~----l~~L~~L~Ls~N~l~~l------- 156 (622)
T 3g06_A 95 SLPV---LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGNQL-TSLPVL----PPGLQELSVSDNQLASL------- 156 (622)
T ss_dssp CCCC---CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSSCC-SCCCCC----CTTCCEEECCSSCCSCC-------
T ss_pred cCCC---CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCCCC-CcCCCC----CCCCCEEECcCCcCCCc-------
Confidence 5444 67788888888888887776 567788888887654 346653 37777888877766532
Q ss_pred ccCcccchhhhcccCCCcEEEeeccCCCCCCCCCccCCCCeEEEE
Q 003090 415 DSSSNAKFIELGALSRLTSLHIHIPEGKIMPSDMSFQNLTSFSIA 459 (848)
Q Consensus 415 ~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~ 459 (848)
+ ..+.+|+.|++++|.++.+|. .+++|+.|++.
T Consensus 157 -------~---~~~~~L~~L~L~~N~l~~l~~--~~~~L~~L~Ls 189 (622)
T 3g06_A 157 -------P---ALPSELCKLWAYNNQLTSLPM--LPSGLQELSVS 189 (622)
T ss_dssp -------C---CCCTTCCEEECCSSCCSCCCC--CCTTCCEEECC
T ss_pred -------C---CccCCCCEEECCCCCCCCCcc--cCCCCcEEECC
Confidence 1 123567777777777666552 33444444443
No 66
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.73 E-value=7e-17 Score=166.26 Aligned_cols=194 Identities=23% Similarity=0.361 Sum_probs=163.9
Q ss_pred CCceeeecCCCcccCCcccccccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCCCC
Q 003090 235 LTGISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLP 314 (848)
Q Consensus 235 l~~l~l~~n~l~~lp~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp 314 (848)
.+.++++++.++.+|..+. +++++|++++|.+..++...|.++++|++|++++ +.+.. +|
T Consensus 18 ~~~l~~~~~~l~~ip~~~~-~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~--------------n~l~~-----i~ 77 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSNIP-ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLND--------------NKLQT-----LP 77 (270)
T ss_dssp TTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCS--------------SCCSC-----CC
T ss_pred CCEEEccCCCCCccCCCCC-CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCC--------------CccCe-----eC
Confidence 3568899999999998765 6899999999999999887788999999999999 78877 55
Q ss_pred ch-hhhcccCcEEEccCccccCCc-hhhccccCCCEEEccCCCCcccCh-hhccCCcccEEeccCCccccccChhhhhcc
Q 003090 315 SS-LSFLINLRTLRLHDRRIQGDL-SLIGELSGLEILDLSESDVSEIPV-SFGRLSHLRLLDLTGCYILELIPRGVLSRL 391 (848)
Q Consensus 315 ~~-~~~l~~L~~L~L~~~~~~~~~-~~i~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~~l~~l 391 (848)
.. +..+++|++|++++|.+...+ ..+..+++|++|++++|.++.+|. .++.+++|++|++++|.. ..+|...+..+
T Consensus 78 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l 156 (270)
T 2o6q_A 78 AGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNEL-QSLPKGVFDKL 156 (270)
T ss_dssp TTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTC
T ss_pred hhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcC-CccCHhHccCC
Confidence 54 588999999999999888777 567899999999999999997765 478999999999999865 45676657899
Q ss_pred ccccEEeccccccccccccccccccCcccchhhhcccCCCcEEEeeccCCCCCCCCC--ccCCCCeEEEEeCC
Q 003090 392 RKLEELYMSHSFRHWQFESESEEDSSSNAKFIELGALSRLTSLHIHIPEGKIMPSDM--SFQNLTSFSIAIGD 462 (848)
Q Consensus 392 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~ 462 (848)
++|++|++++|.+... .+..+..+++|+.|++++|.+..++... .+++|+.|++..+.
T Consensus 157 ~~L~~L~L~~n~l~~~-------------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 157 TSLKELRLYNNQLKRV-------------PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp TTCCEEECCSSCCSCC-------------CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cccceeEecCCcCcEe-------------ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence 9999999999988754 3345788999999999999999888764 78899999887443
No 67
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.72 E-value=5.6e-17 Score=168.37 Aligned_cols=195 Identities=22% Similarity=0.206 Sum_probs=169.4
Q ss_pred cCCCceeeecCCCcccCCcccccccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCC
Q 003090 233 LDLTGISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFL 312 (848)
Q Consensus 233 ~~l~~l~l~~n~l~~lp~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 312 (848)
..++.++++++.++.+|..+. ++++.|++++|.+..++...|..+++|++|++++ +.+..
T Consensus 10 ~~l~~l~~~~~~l~~ip~~~~-~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~--------------n~l~~----- 69 (290)
T 1p9a_G 10 ASHLEVNCDKRNLTALPPDLP-KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR--------------AELTK----- 69 (290)
T ss_dssp TTCCEEECTTSCCSSCCSCCC-TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTT--------------SCCCE-----
T ss_pred CCccEEECCCCCCCcCCCCCC-CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCC--------------CccCc-----
Confidence 346789999999999998775 7899999999999988877789999999999999 88877
Q ss_pred CCchhhhcccCcEEEccCccccCCchhhccccCCCEEEccCCCCcccC-hhhccCCcccEEeccCCccccccChhhhhcc
Q 003090 313 LPSSLSFLINLRTLRLHDRRIQGDLSLIGELSGLEILDLSESDVSEIP-VSFGRLSHLRLLDLTGCYILELIPRGVLSRL 391 (848)
Q Consensus 313 lp~~~~~l~~L~~L~L~~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~~~~p~~~l~~l 391 (848)
++.. +.+++|++|++++|.+...+..+..+++|++|++++|.++.+| ..+..+++|++|++++|... .+|.+.+..+
T Consensus 70 ~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l 147 (290)
T 1p9a_G 70 LQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPT 147 (290)
T ss_dssp EECC-SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC-CCCTTTTTTC
T ss_pred ccCC-CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC-ccChhhcccc
Confidence 6554 7899999999999998888888899999999999999999887 46899999999999998664 5777768899
Q ss_pred ccccEEeccccccccccccccccccCcccchhhhcccCCCcEEEeeccCCCCCCCCC-ccCCCCeEEEEeCC
Q 003090 392 RKLEELYMSHSFRHWQFESESEEDSSSNAKFIELGALSRLTSLHIHIPEGKIMPSDM-SFQNLTSFSIAIGD 462 (848)
Q Consensus 392 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~ 462 (848)
++|+.|++++|.+... ....+..+++|+.|++++|.+..+|..+ ...+|+.+.+..+.
T Consensus 148 ~~L~~L~L~~N~l~~l-------------~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 148 PKLEKLSLANNNLTEL-------------PAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp TTCCEEECTTSCCSCC-------------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred cCCCEEECCCCcCCcc-------------CHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCC
Confidence 9999999999998754 2345678999999999999999999888 77889999887443
No 68
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.71 E-value=5.6e-17 Score=180.56 Aligned_cols=195 Identities=26% Similarity=0.306 Sum_probs=100.2
Q ss_pred CCCceeeecCCCcccCCc-c-cccccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCC
Q 003090 234 DLTGISLMFNDIHEVPDE-L-ECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLF 311 (848)
Q Consensus 234 ~l~~l~l~~n~l~~lp~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~ 311 (848)
.++.|++++|.+..++.. + .+++|++|++++|.+..++...|.++++|++|++++ +.+...
T Consensus 76 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~--------------n~l~~~--- 138 (452)
T 3zyi_A 76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD--------------NWLTVI--- 138 (452)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS--------------SCCSBC---
T ss_pred CccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC--------------CcCCcc---
Confidence 345566666666655433 2 566666666666666665555556666666666666 445441
Q ss_pred CCCchhhhcccCcEEEccCccccCCc-hhhccccCCCEEEccCC-CCcccCh-hhccCCcccEEeccCCccccccChhhh
Q 003090 312 LLPSSLSFLINLRTLRLHDRRIQGDL-SLIGELSGLEILDLSES-DVSEIPV-SFGRLSHLRLLDLTGCYILELIPRGVL 388 (848)
Q Consensus 312 ~lp~~~~~l~~L~~L~L~~~~~~~~~-~~i~~l~~L~~L~l~~~-~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~~l 388 (848)
.+..+..+++|++|++++|.+...+ ..+.++++|++|++++| .+..+|. .+..+++|++|++++|... .+|. +
T Consensus 139 -~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~--~ 214 (452)
T 3zyi_A 139 -PSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPN--L 214 (452)
T ss_dssp -CTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-SCCC--C
T ss_pred -ChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc-cccc--c
Confidence 2223555555555555555544433 34555555555555552 4444443 2455555555555554332 3343 4
Q ss_pred hccccccEEeccccccccccccccccccCcccchhhhcccCCCcEEEeeccCCCCCCCCC--ccCCCCeEEEEeCC
Q 003090 389 SRLRKLEELYMSHSFRHWQFESESEEDSSSNAKFIELGALSRLTSLHIHIPEGKIMPSDM--SFQNLTSFSIAIGD 462 (848)
Q Consensus 389 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~ 462 (848)
..+++|++|++++|.+... .+..+.++++|+.|++++|.+..++... .+++|+.|++..+.
T Consensus 215 ~~l~~L~~L~Ls~N~l~~~-------------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 277 (452)
T 3zyi_A 215 TPLVGLEELEMSGNHFPEI-------------RPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN 277 (452)
T ss_dssp TTCTTCCEEECTTSCCSEE-------------CGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred cccccccEEECcCCcCccc-------------CcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCc
Confidence 5555555555555554433 2334455555555555555544433222 44555555554443
No 69
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.70 E-value=2.4e-17 Score=170.53 Aligned_cols=145 Identities=26% Similarity=0.261 Sum_probs=73.8
Q ss_pred cCCCcccCCcccccccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCCCCchhhhcc
Q 003090 242 FNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLPSSLSFLI 321 (848)
Q Consensus 242 ~n~l~~lp~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp~~~~~l~ 321 (848)
+..+..+|..+. +++++|++++|.+..++...|.++++|++|++++ +.+... .+..+..++
T Consensus 16 ~~~l~~ip~~l~-~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~--------------n~l~~~----~~~~~~~l~ 76 (276)
T 2z62_A 16 ELNFYKIPDNLP-FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSR--------------CEIQTI----EDGAYQSLS 76 (276)
T ss_dssp TSCCSSCCSSSC-TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTT--------------CCCCEE----CTTTTTTCT
T ss_pred CCCccccCCCCC-CCccEEECCCCcccccCHhHhccccCCcEEECCC--------------CcCCcc----CHHHccCCc
Confidence 334444554432 3455555555555555544445555555555555 444441 223455555
Q ss_pred cCcEEEccCccccCCc-hhhccccCCCEEEccCCCCcccCh-hhccCCcccEEeccCCcccc-ccChhhhhccccccEEe
Q 003090 322 NLRTLRLHDRRIQGDL-SLIGELSGLEILDLSESDVSEIPV-SFGRLSHLRLLDLTGCYILE-LIPRGVLSRLRKLEELY 398 (848)
Q Consensus 322 ~L~~L~L~~~~~~~~~-~~i~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~-~~p~~~l~~l~~L~~L~ 398 (848)
+|++|++++|.+...+ ..+.++++|++|++++|.+..++. .++++++|++|++++|.... .+|.. ++++++|++|+
T Consensus 77 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~-~~~l~~L~~L~ 155 (276)
T 2z62_A 77 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLD 155 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEE
T ss_pred CCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchh-hccCCCCCEEE
Confidence 5555555555544433 445555555555555555554443 35555555555555554433 23444 45555555555
Q ss_pred cccccccc
Q 003090 399 MSHSFRHW 406 (848)
Q Consensus 399 l~~~~~~~ 406 (848)
+++|.+..
T Consensus 156 Ls~N~l~~ 163 (276)
T 2z62_A 156 LSSNKIQS 163 (276)
T ss_dssp CCSSCCCE
T ss_pred CCCCCCCc
Confidence 55555443
No 70
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.70 E-value=8.7e-17 Score=166.33 Aligned_cols=196 Identities=23% Similarity=0.266 Sum_probs=165.6
Q ss_pred CCCceeeecCCCcccCCc-c-cccccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCC
Q 003090 234 DLTGISLMFNDIHEVPDE-L-ECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLF 311 (848)
Q Consensus 234 ~l~~l~l~~n~l~~lp~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~ 311 (848)
.++.|++++|.+..++.. + .+++|++|++++|.+..++...|.++++|++|++++ +.+...
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~--------------n~l~~~--- 91 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG--------------NPIQSL--- 91 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTT--------------CCCCEE---
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCC--------------CccCcc---
Confidence 578999999999988863 4 899999999999999999887789999999999999 888873
Q ss_pred CCCchhhhcccCcEEEccCccccCCc-hhhccccCCCEEEccCCCCcc--cChhhccCCcccEEeccCCccccccChhhh
Q 003090 312 LLPSSLSFLINLRTLRLHDRRIQGDL-SLIGELSGLEILDLSESDVSE--IPVSFGRLSHLRLLDLTGCYILELIPRGVL 388 (848)
Q Consensus 312 ~lp~~~~~l~~L~~L~L~~~~~~~~~-~~i~~l~~L~~L~l~~~~l~~--lp~~i~~L~~L~~L~l~~~~~~~~~p~~~l 388 (848)
.|..+..+++|++|++++|.+.... ..++++++|++|++++|.+.. +|..++++++|++|++++|.... ++...+
T Consensus 92 -~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~ 169 (276)
T 2z62_A 92 -ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS-IYCTDL 169 (276)
T ss_dssp -CTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE-ECGGGG
T ss_pred -ChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCc-CCHHHh
Confidence 4577999999999999999888776 479999999999999999985 78999999999999999987655 444337
Q ss_pred hcccccc----EEeccccccccccccccccccCcccchhhhcccCCCcEEEeeccCCCCCCCCC--ccCCCCeEEEEeCC
Q 003090 389 SRLRKLE----ELYMSHSFRHWQFESESEEDSSSNAKFIELGALSRLTSLHIHIPEGKIMPSDM--SFQNLTSFSIAIGD 462 (848)
Q Consensus 389 ~~l~~L~----~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~ 462 (848)
..+++|+ .|++++|.+... +.......+|+.|++++|.++.++... .+++|+.|++..+.
T Consensus 170 ~~l~~L~~l~l~L~ls~n~l~~~--------------~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 170 RVLHQMPLLNLSLDLSLNPMNFI--------------QPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp HHHHTCTTCCEEEECCSSCCCEE--------------CTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred hhhhhccccceeeecCCCccccc--------------CccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCc
Confidence 7777777 899999988754 222333448999999999999988775 78999999987544
No 71
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.70 E-value=6.8e-17 Score=179.20 Aligned_cols=222 Identities=25% Similarity=0.332 Sum_probs=143.2
Q ss_pred chhHHHHHHHhccCCCceeeecCCCcccCCcc--cccccceeecccCcCcccChHHHccCCceeEEEccCcccccccccC
Q 003090 221 SITKIQYEIAGWLDLTGISLMFNDIHEVPDEL--ECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRF 298 (848)
Q Consensus 221 ~~~~l~~~i~~~~~l~~l~l~~n~l~~lp~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~ 298 (848)
++..++..+. ..++.|++++|.+..++... .+++|++|++++|.+..++...|.++++|++|++++
T Consensus 54 ~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~---------- 121 (440)
T 3zyj_A 54 NLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD---------- 121 (440)
T ss_dssp CCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS----------
T ss_pred CcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC----------
Confidence 4444444443 24577888888888776433 778888888888888887777778888888888888
Q ss_pred CCCCCCCCCCCCCCCCc-hhhhcccCcEEEccCccccCCc-hhhccccCCCEEEccCC-CCcccCh-hhccCCcccEEec
Q 003090 299 PFLFPPLPSSPLFLLPS-SLSFLINLRTLRLHDRRIQGDL-SLIGELSGLEILDLSES-DVSEIPV-SFGRLSHLRLLDL 374 (848)
Q Consensus 299 ~~~~~~l~~~~~~~lp~-~~~~l~~L~~L~L~~~~~~~~~-~~i~~l~~L~~L~l~~~-~l~~lp~-~i~~L~~L~~L~l 374 (848)
|.+.. +|. .+..+++|++|++++|.+...+ ..+.++++|++|++++| .+..+|. .+.++++|++|++
T Consensus 122 ----n~l~~-----~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L 192 (440)
T 3zyj_A 122 ----NRLTT-----IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNL 192 (440)
T ss_dssp ----SCCSS-----CCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEEC
T ss_pred ----CcCCe-----eCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecC
Confidence 66666 443 5677777777777777666554 45667777777777763 4555554 4666777777777
Q ss_pred cCCccccccChhhhhccccccEEeccccccccccccccccccCcccchhhhcccCCCcEEEeeccCCCCCCCCC--ccCC
Q 003090 375 TGCYILELIPRGVLSRLRKLEELYMSHSFRHWQFESESEEDSSSNAKFIELGALSRLTSLHIHIPEGKIMPSDM--SFQN 452 (848)
Q Consensus 375 ~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~--~~~~ 452 (848)
++|.. ..+|. +..+++|++|++++|.+... .+..+.++++|+.|++++|.+..++... .+++
T Consensus 193 ~~n~l-~~~~~--~~~l~~L~~L~Ls~N~l~~~-------------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 256 (440)
T 3zyj_A 193 AMCNL-REIPN--LTPLIKLDELDLSGNHLSAI-------------RPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQS 256 (440)
T ss_dssp TTSCC-SSCCC--CTTCSSCCEEECTTSCCCEE-------------CTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTT
T ss_pred CCCcC-ccccc--cCCCcccCEEECCCCccCcc-------------ChhhhccCccCCEEECCCCceeEEChhhhcCCCC
Confidence 77644 34554 56777777777777766544 3445666667777777766666554433 5666
Q ss_pred CCeEEEEeCCC------CCCCCCcccceEEecc
Q 003090 453 LTSFSIAIGDL------EERPLSDFIGLFLQKF 479 (848)
Q Consensus 453 L~~L~l~~~~~------~~~~~~~l~~l~l~~~ 479 (848)
|+.|++..+.. .....+.++.+.+.+.
T Consensus 257 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 289 (440)
T 3zyj_A 257 LVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289 (440)
T ss_dssp CCEEECTTSCCCCCCTTTTSSCTTCCEEECCSS
T ss_pred CCEEECCCCCCCccChhHhccccCCCEEEcCCC
Confidence 66666665544 1223344555555443
No 72
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.69 E-value=5.3e-18 Score=178.70 Aligned_cols=194 Identities=18% Similarity=0.182 Sum_probs=142.6
Q ss_pred CCCceeeecCCCcccCCcccccccceeecccCcCc--ccChHHH------ccCCceeEEEccCcccccccccCCCCCCCC
Q 003090 234 DLTGISLMFNDIHEVPDELECPKLQALFLQENSPL--AIPDRFF------QGMKDLQVLDLGGIRRFSFSVRFPFLFPPL 305 (848)
Q Consensus 234 ~l~~l~l~~n~l~~lp~~~~~~~L~~L~l~~~~~~--~~~~~~~------~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l 305 (848)
.++.+++++|.+ .+|..+. ..|+.|++++|.+. .+|..+. .++++|++|++++ +.+
T Consensus 44 ~L~~l~l~~n~l-~~p~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~--------------n~l 107 (312)
T 1wwl_A 44 SLEYLLKRVDTE-ADLGQFT-DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLEN--------------LEV 107 (312)
T ss_dssp ECTTHHHHCCTT-CCCHHHH-HHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEE--------------EBC
T ss_pred CceeEeeccccc-ccHHHHH-HHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccC--------------Ccc
Confidence 367788888888 7777662 12888899988664 3555432 2688999999999 777
Q ss_pred CCCCCCCCCchh--hhcccCcEEEccCccccCCchhhccc-----cCCCEEEccCCCCcccC-hhhccCCcccEEeccCC
Q 003090 306 PSSPLFLLPSSL--SFLINLRTLRLHDRRIQGDLSLIGEL-----SGLEILDLSESDVSEIP-VSFGRLSHLRLLDLTGC 377 (848)
Q Consensus 306 ~~~~~~~lp~~~--~~l~~L~~L~L~~~~~~~~~~~i~~l-----~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~ 377 (848)
.+. .|..+ ..+++|++|++++|.+...+..++.+ ++|++|++++|.+..+| ..++++++|++|++++|
T Consensus 108 ~~~----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N 183 (312)
T 1wwl_A 108 TGT----APPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDN 183 (312)
T ss_dssp BSC----CCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSC
T ss_pred cch----hHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCC
Confidence 755 77766 88999999999999888877777777 89999999999999776 67889999999999998
Q ss_pred ccccc--cChhhh--hccccccEEeccccccccccccccccccCcccch-hhhcccCCCcEEEeeccCCCCCCC-C-C-c
Q 003090 378 YILEL--IPRGVL--SRLRKLEELYMSHSFRHWQFESESEEDSSSNAKF-IELGALSRLTSLHIHIPEGKIMPS-D-M-S 449 (848)
Q Consensus 378 ~~~~~--~p~~~l--~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-~~L~~l~~L~~L~l~~~~~~~~~~-~-~-~ 449 (848)
...+. +|.. + +++++|++|++++|.+... ...+ ..+..+++|+.|++++|.+...+. . . .
T Consensus 184 ~l~~~~~~~~~-~~~~~l~~L~~L~L~~N~l~~~-----------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 251 (312)
T 1wwl_A 184 PELGERGLISA-LCPLKFPTLQVLALRNAGMETP-----------SGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW 251 (312)
T ss_dssp TTCHHHHHHHH-SCTTSCTTCCEEECTTSCCCCH-----------HHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCC
T ss_pred CcCcchHHHHH-HHhccCCCCCEEECCCCcCcch-----------HHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhh
Confidence 76654 2333 3 7889999999999987632 0122 334577899999999998876542 1 1 3
Q ss_pred cCCCCeEEEE
Q 003090 450 FQNLTSFSIA 459 (848)
Q Consensus 450 ~~~L~~L~l~ 459 (848)
+++|+.|+++
T Consensus 252 l~~L~~L~Ls 261 (312)
T 1wwl_A 252 PSQLNSLNLS 261 (312)
T ss_dssp CTTCCEEECT
T ss_pred cCCCCEEECC
Confidence 4455555443
No 73
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.68 E-value=4.3e-16 Score=160.32 Aligned_cols=177 Identities=22% Similarity=0.367 Sum_probs=153.4
Q ss_pred CCCceeeecCCCcccCCc-c-cccccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCC
Q 003090 234 DLTGISLMFNDIHEVPDE-L-ECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLF 311 (848)
Q Consensus 234 ~l~~l~l~~n~l~~lp~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~ 311 (848)
.++.|++++|.+..++.. + .+++|++|++++|.+..++..+|.++++|++|++++ +.+...
T Consensus 38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~--------------n~l~~~--- 100 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD--------------NKLQAL--- 100 (270)
T ss_dssp TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS--------------SCCCCC---
T ss_pred CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC--------------CcCCcC---
Confidence 578999999999999874 3 899999999999999999998889999999999999 888873
Q ss_pred CCCchhhhcccCcEEEccCccccCCc-hhhccccCCCEEEccCCCCcccChh-hccCCcccEEeccCCccccccChhhhh
Q 003090 312 LLPSSLSFLINLRTLRLHDRRIQGDL-SLIGELSGLEILDLSESDVSEIPVS-FGRLSHLRLLDLTGCYILELIPRGVLS 389 (848)
Q Consensus 312 ~lp~~~~~l~~L~~L~L~~~~~~~~~-~~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~~l~ 389 (848)
.+..+..+++|++|++++|.+...+ ..++.+++|++|++++|.++.+|.. +..+++|++|++++|... .+|...+.
T Consensus 101 -~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~ 178 (270)
T 2o6q_A 101 -PIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFD 178 (270)
T ss_dssp -CTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTT
T ss_pred -CHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCc-EeChhHhc
Confidence 3355789999999999999888877 5689999999999999999988875 789999999999998665 46655588
Q ss_pred ccccccEEeccccccccccccccccccCcccchhhhcccCCCcEEEeeccCCC
Q 003090 390 RLRKLEELYMSHSFRHWQFESESEEDSSSNAKFIELGALSRLTSLHIHIPEGK 442 (848)
Q Consensus 390 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~ 442 (848)
++++|++|++++|.+... ....+..+++|+.|++++|...
T Consensus 179 ~l~~L~~L~L~~N~l~~~-------------~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 179 KLTELKTLKLDNNQLKRV-------------PEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TCTTCCEEECCSSCCSCC-------------CTTTTTTCTTCCEEECCSSCBC
T ss_pred cCCCcCEEECCCCcCCcC-------------CHHHhccccCCCEEEecCCCee
Confidence 999999999999988754 2345788999999999999754
No 74
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.68 E-value=7e-16 Score=161.85 Aligned_cols=189 Identities=19% Similarity=0.254 Sum_probs=160.9
Q ss_pred cCCCceeeecCCCcccCCcccccccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCC
Q 003090 233 LDLTGISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFL 312 (848)
Q Consensus 233 ~~l~~l~l~~n~l~~lp~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 312 (848)
..++.|++++|.+..+|....+++|++|++++|.+..++. +..+++|++|++++ +.+..
T Consensus 41 ~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~--------------n~l~~----- 99 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSG--------------NPLKN----- 99 (308)
T ss_dssp HTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCS--------------CCCSC-----
T ss_pred CCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccC--------------CcCCC-----
Confidence 3578899999999998855589999999999999988887 68999999999999 78877
Q ss_pred CCchhhhcccCcEEEccCccccCCchhhccccCCCEEEccCCCCcccChhhccCCcccEEeccCCccccccChhhhhccc
Q 003090 313 LPSSLSFLINLRTLRLHDRRIQGDLSLIGELSGLEILDLSESDVSEIPVSFGRLSHLRLLDLTGCYILELIPRGVLSRLR 392 (848)
Q Consensus 313 lp~~~~~l~~L~~L~L~~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~l~~l~ 392 (848)
++ .+..+++|++|++++|.+... +.+..+++|++|++++|.++.+|. ++.+++|++|++++|... .++. +..++
T Consensus 100 ~~-~~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~-~~~~--l~~l~ 173 (308)
T 1h6u_A 100 VS-AIAGLQSIKTLDLTSTQITDV-TPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVS-DLTP--LANLS 173 (308)
T ss_dssp CG-GGTTCTTCCEEECTTSCCCCC-GGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCC-CCGG--GTTCT
T ss_pred ch-hhcCCCCCCEEECCCCCCCCc-hhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCC-CChh--hcCCC
Confidence 65 688999999999999977664 458999999999999999998876 899999999999998654 4665 78999
Q ss_pred cccEEeccccccccccccccccccCcccchhhhcccCCCcEEEeeccCCCCCCCCCccCCCCeEEEEeCCC
Q 003090 393 KLEELYMSHSFRHWQFESESEEDSSSNAKFIELGALSRLTSLHIHIPEGKIMPSDMSFQNLTSFSIAIGDL 463 (848)
Q Consensus 393 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~ 463 (848)
+|+.|++++|.+... ..+..+++|+.|++++|.+..++....+++|+.|++..+..
T Consensus 174 ~L~~L~l~~n~l~~~---------------~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 174 KLTTLKADDNKISDI---------------SPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTI 229 (308)
T ss_dssp TCCEEECCSSCCCCC---------------GGGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEEE
T ss_pred CCCEEECCCCccCcC---------------hhhcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCee
Confidence 999999999987643 23888999999999999998887533889999999986553
No 75
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.67 E-value=1.5e-16 Score=160.72 Aligned_cols=191 Identities=14% Similarity=0.249 Sum_probs=160.9
Q ss_pred CCCceeeecCCCcccCCcc--cccccceeecccCc-CcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCC
Q 003090 234 DLTGISLMFNDIHEVPDEL--ECPKLQALFLQENS-PLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPL 310 (848)
Q Consensus 234 ~l~~l~l~~n~l~~lp~~~--~~~~L~~L~l~~~~-~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~ 310 (848)
.++.|++++|.++.+|... .+++|++|++++|. +..++...|.++++|++|++++| +.+..
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~-------------n~l~~--- 95 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT-------------RNLTY--- 95 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEE-------------TTCCE---
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCC-------------CCeeE---
Confidence 6789999999999998843 89999999999996 89999877899999999999974 56766
Q ss_pred CCCC-chhhhcccCcEEEccCccccCCchhhccccCCC---EEEccCC-CCcccChh-hccCCccc-EEeccCCcccccc
Q 003090 311 FLLP-SSLSFLINLRTLRLHDRRIQGDLSLIGELSGLE---ILDLSES-DVSEIPVS-FGRLSHLR-LLDLTGCYILELI 383 (848)
Q Consensus 311 ~~lp-~~~~~l~~L~~L~L~~~~~~~~~~~i~~l~~L~---~L~l~~~-~l~~lp~~-i~~L~~L~-~L~l~~~~~~~~~ 383 (848)
+| ..+..+++|++|++++|.+...+. ++.+.+|+ +|++++| .++.+|.. +..+++|+ +|++++|... .+
T Consensus 96 --i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i 171 (239)
T 2xwt_C 96 --IDPDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SV 171 (239)
T ss_dssp --ECTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EE
T ss_pred --cCHHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-cc
Confidence 44 568899999999999998877555 88888888 9999999 99988864 88999999 9999998665 78
Q ss_pred ChhhhhccccccEEeccccc-cccccccccccccCcccchhhhccc-CCCcEEEeeccCCCCCCCCCccCCCCeEEEE
Q 003090 384 PRGVLSRLRKLEELYMSHSF-RHWQFESESEEDSSSNAKFIELGAL-SRLTSLHIHIPEGKIMPSDMSFQNLTSFSIA 459 (848)
Q Consensus 384 p~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~~~L~~l-~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~ 459 (848)
|...+.. ++|+.|++++|. +... ....+..+ ++|+.|++++|.++.+|.. .+++|+.|.+.
T Consensus 172 ~~~~~~~-~~L~~L~L~~n~~l~~i-------------~~~~~~~l~~~L~~L~l~~N~l~~l~~~-~~~~L~~L~l~ 234 (239)
T 2xwt_C 172 QGYAFNG-TKLDAVYLNKNKYLTVI-------------DKDAFGGVYSGPSLLDVSQTSVTALPSK-GLEHLKELIAR 234 (239)
T ss_dssp CTTTTTT-CEEEEEECTTCTTCCEE-------------CTTTTTTCSBCCSEEECTTCCCCCCCCT-TCTTCSEEECT
T ss_pred CHhhcCC-CCCCEEEcCCCCCcccC-------------CHHHhhccccCCcEEECCCCccccCChh-HhccCceeecc
Confidence 8874444 899999999995 7643 33567788 9999999999999988877 78889988875
No 76
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.67 E-value=5.8e-16 Score=157.49 Aligned_cols=175 Identities=21% Similarity=0.298 Sum_probs=137.7
Q ss_pred CCceeeecCCCcccCCcccccccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCCCC
Q 003090 235 LTGISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLP 314 (848)
Q Consensus 235 l~~l~l~~n~l~~lp~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp 314 (848)
.+.++++++.+..+|..+. ++++.|++++|.+..++...|.++++|++|++++ +.+... .|
T Consensus 16 ~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~--------------n~l~~~----~~ 76 (251)
T 3m19_A 16 KKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDY--------------NQLQTL----SA 76 (251)
T ss_dssp GTEEECTTCCCSSCCSCCC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT--------------SCCCCC----CT
T ss_pred CeEEecCCCCccccCCCCC-CCCCEEEccCCCcCccCHhHhcCcccCCEEECCC--------------CcCCcc----CH
Confidence 3568888888888887765 6888899999888888777778888999999988 777774 55
Q ss_pred chhhhcccCcEEEccCccccCCc-hhhccccCCCEEEccCCCCcccChh-hccCCcccEEeccCCccccccChhhhhccc
Q 003090 315 SSLSFLINLRTLRLHDRRIQGDL-SLIGELSGLEILDLSESDVSEIPVS-FGRLSHLRLLDLTGCYILELIPRGVLSRLR 392 (848)
Q Consensus 315 ~~~~~l~~L~~L~L~~~~~~~~~-~~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~~l~~l~ 392 (848)
..+..+++|++|++++|.+...+ ..+..+++|++|++++|.++.+|.. +..+++|++|++++|... .+|...++.++
T Consensus 77 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~ 155 (251)
T 3m19_A 77 GVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLT 155 (251)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCT
T ss_pred hHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCC-ccCHHHcCcCc
Confidence 56788888999999988877766 5678888889999988888877765 577888888888887554 45554478888
Q ss_pred cccEEeccccccccccccccccccCcccchhhhcccCCCcEEEeeccCCC
Q 003090 393 KLEELYMSHSFRHWQFESESEEDSSSNAKFIELGALSRLTSLHIHIPEGK 442 (848)
Q Consensus 393 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~ 442 (848)
+|++|++++|.+... .+..+..+++|+.|++++|.+.
T Consensus 156 ~L~~L~L~~N~l~~~-------------~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 156 NLQTLSLSTNQLQSV-------------PHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp TCCEEECCSSCCSCC-------------CTTTTTTCTTCCEEECCSCCBC
T ss_pred CCCEEECCCCcCCcc-------------CHHHHhCCCCCCEEEeeCCcee
Confidence 888888888877654 3345777888888888887654
No 77
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.67 E-value=1.8e-17 Score=174.67 Aligned_cols=202 Identities=17% Similarity=0.187 Sum_probs=157.1
Q ss_pred HHHHHhccCCCceeeecCCCcc--cCCcc--------cccccceeecccCcCc-ccChHHH-ccCCceeEEEccCccccc
Q 003090 226 QYEIAGWLDLTGISLMFNDIHE--VPDEL--------ECPKLQALFLQENSPL-AIPDRFF-QGMKDLQVLDLGGIRRFS 293 (848)
Q Consensus 226 ~~~i~~~~~l~~l~l~~n~l~~--lp~~~--------~~~~L~~L~l~~~~~~-~~~~~~~-~~~~~Lr~L~l~~~~~~~ 293 (848)
+..+... ++.+++++|.+.. +|... .+++|++|++++|.+. .+|..+| ..+++|++|++++
T Consensus 58 p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~----- 130 (312)
T 1wwl_A 58 LGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRN----- 130 (312)
T ss_dssp CHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEES-----
T ss_pred HHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccC-----
Confidence 4444444 6778888888753 45443 4889999999999876 5776653 7899999999999
Q ss_pred ccccCCCCCCCCCCCCCCCCCchhhhc-----ccCcEEEccCccccCCc-hhhccccCCCEEEccCCCCcc---cChhh-
Q 003090 294 FSVRFPFLFPPLPSSPLFLLPSSLSFL-----INLRTLRLHDRRIQGDL-SLIGELSGLEILDLSESDVSE---IPVSF- 363 (848)
Q Consensus 294 ~~~~~~~~~~~l~~~~~~~lp~~~~~l-----~~L~~L~L~~~~~~~~~-~~i~~l~~L~~L~l~~~~l~~---lp~~i- 363 (848)
+.+.+ .|..++.+ ++|++|++++|.+...+ ..++++++|++|++++|.+.. +|..+
T Consensus 131 ---------N~l~~-----~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 196 (312)
T 1wwl_A 131 ---------VSWAT-----RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196 (312)
T ss_dssp ---------CBCSS-----SSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred ---------CCCcc-----hhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence 88888 78888888 89999999999888877 789999999999999998763 45555
Q ss_pred -ccCCcccEEeccCCcccc--ccChhhhhccccccEEeccccccccccccccccccCcccchhhhcccCCCcEEEeeccC
Q 003090 364 -GRLSHLRLLDLTGCYILE--LIPRGVLSRLRKLEELYMSHSFRHWQFESESEEDSSSNAKFIELGALSRLTSLHIHIPE 440 (848)
Q Consensus 364 -~~L~~L~~L~l~~~~~~~--~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~ 440 (848)
+++++|++|++++|.... .++...+.++++|++|++++|.+....+ ...+..+++|+.|++++|.
T Consensus 197 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~------------~~~~~~l~~L~~L~Ls~N~ 264 (312)
T 1wwl_A 197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG------------APSCDWPSQLNSLNLSFTG 264 (312)
T ss_dssp TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCC------------CSCCCCCTTCCEEECTTSC
T ss_pred hccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccc------------hhhhhhcCCCCEEECCCCc
Confidence 889999999999987652 4455546788999999999998876421 1345567899999999999
Q ss_pred CCCCCCCCccCCCCeEEEEeC
Q 003090 441 GKIMPSDMSFQNLTSFSIAIG 461 (848)
Q Consensus 441 ~~~~~~~~~~~~L~~L~l~~~ 461 (848)
++.+|..+. ++|+.|+++.+
T Consensus 265 l~~ip~~~~-~~L~~L~Ls~N 284 (312)
T 1wwl_A 265 LKQVPKGLP-AKLSVLDLSYN 284 (312)
T ss_dssp CSSCCSSCC-SEEEEEECCSS
T ss_pred cChhhhhcc-CCceEEECCCC
Confidence 988887655 66666666533
No 78
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.67 E-value=9.3e-17 Score=169.57 Aligned_cols=201 Identities=18% Similarity=0.162 Sum_probs=131.5
Q ss_pred CchhHHHHHHHhcc-CCCceeeecCCCcccCCc-c-cccccceeecccCcCcccChHHHccCCceeEEEccCcccccccc
Q 003090 220 PSITKIQYEIAGWL-DLTGISLMFNDIHEVPDE-L-ECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSV 296 (848)
Q Consensus 220 ~~~~~l~~~i~~~~-~l~~l~l~~n~l~~lp~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~ 296 (848)
..+..+...+.... .++.|++++|.+..++.. + .+++|++|++++|.+..+++ +..+++|++|++++
T Consensus 20 ~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~-------- 89 (317)
T 3o53_A 20 SSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN-------- 89 (317)
T ss_dssp TTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS--------
T ss_pred cchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC--------
Confidence 44555555555444 588899999998887743 3 78899999999998776665 67888999999998
Q ss_pred cCCCCCCCCCCCCCCCCCchhhhcccCcEEEccCccccCCchhhccccCCCEEEccCCCCcccCh-hhccCCcccEEecc
Q 003090 297 RFPFLFPPLPSSPLFLLPSSLSFLINLRTLRLHDRRIQGDLSLIGELSGLEILDLSESDVSEIPV-SFGRLSHLRLLDLT 375 (848)
Q Consensus 297 ~~~~~~~~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~ 375 (848)
+.+.. +| ..++|++|++++|.+...+. ..+++|++|++++|.++.++. .++.+++|++|+++
T Consensus 90 ------n~l~~-----l~----~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls 152 (317)
T 3o53_A 90 ------NYVQE-----LL----VGPSIETLHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLK 152 (317)
T ss_dssp ------SEEEE-----EE----ECTTCCEEECCSSCCSEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECT
T ss_pred ------Ccccc-----cc----CCCCcCEEECCCCccCCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECC
Confidence 55544 33 23667777777776555442 225667777777777765543 56667777777777
Q ss_pred CCccccccChhhhhccccccEEeccccccccccccccccccCcccchhhhcccCCCcEEEeeccCCCCCCCCC-ccCCCC
Q 003090 376 GCYILELIPRGVLSRLRKLEELYMSHSFRHWQFESESEEDSSSNAKFIELGALSRLTSLHIHIPEGKIMPSDM-SFQNLT 454 (848)
Q Consensus 376 ~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~ 454 (848)
+|......+..+...+++|++|++++|.+... .....+++|+.|++++|.+..++..+ .+++|+
T Consensus 153 ~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~---------------~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~ 217 (317)
T 3o53_A 153 LNEIDTVNFAELAASSDTLEHLNLQYNFIYDV---------------KGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVT 217 (317)
T ss_dssp TSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE---------------ECCCCCTTCCEEECCSSCCCEECGGGGGGTTCS
T ss_pred CCCCCcccHHHHhhccCcCCEEECCCCcCccc---------------ccccccccCCEEECCCCcCCcchhhhcccCccc
Confidence 76555544444234667777777777766532 12234666777777777766666555 666677
Q ss_pred eEEEEeCC
Q 003090 455 SFSIAIGD 462 (848)
Q Consensus 455 ~L~l~~~~ 462 (848)
.|++..+.
T Consensus 218 ~L~L~~N~ 225 (317)
T 3o53_A 218 WISLRNNK 225 (317)
T ss_dssp EEECTTSC
T ss_pred EEECcCCc
Confidence 66665443
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.66 E-value=7e-16 Score=158.90 Aligned_cols=188 Identities=21% Similarity=0.308 Sum_probs=138.9
Q ss_pred eeeecCCCcccCCcccccccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCCCCchh
Q 003090 238 ISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLPSSL 317 (848)
Q Consensus 238 l~l~~n~l~~lp~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp~~~ 317 (848)
+++..+.+..+.....+++|+.|++++|.+..++. +..+++|++|++++ +.+.. ++ .+
T Consensus 24 l~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~--l~~l~~L~~L~l~~--------------n~l~~-----~~-~l 81 (272)
T 3rfs_A 24 ANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVRYLALGG--------------NKLHD-----IS-AL 81 (272)
T ss_dssp HHHTCSCTTSEECHHHHTTCCEEECTTSCCCCCTT--GGGCTTCCEEECTT--------------SCCCC-----CG-GG
T ss_pred HHhcCcccccccccccccceeeeeeCCCCcccccc--cccCCCCcEEECCC--------------CCCCC-----ch-hh
Confidence 44455555555444477888888888887777664 56788888888888 67766 43 67
Q ss_pred hhcccCcEEEccCccccCCc-hhhccccCCCEEEccCCCCcccChh-hccCCcccEEeccCCccccccChhhhhcccccc
Q 003090 318 SFLINLRTLRLHDRRIQGDL-SLIGELSGLEILDLSESDVSEIPVS-FGRLSHLRLLDLTGCYILELIPRGVLSRLRKLE 395 (848)
Q Consensus 318 ~~l~~L~~L~L~~~~~~~~~-~~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~~l~~l~~L~ 395 (848)
..+++|++|++++|.+...+ ..++++++|++|++++|.++.+|.. ++.+++|++|++++|... .+|...++++++|+
T Consensus 82 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~ 160 (272)
T 3rfs_A 82 KELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLT 160 (272)
T ss_dssp TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCC
T ss_pred cCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccC-ccCHHHhccCccCC
Confidence 78888888888888777666 4468888888888888888876654 678888888888887554 45555467888888
Q ss_pred EEeccccccccccccccccccCcccchhhhcccCCCcEEEeeccCCCCCCCCC--ccCCCCeEEEEeC
Q 003090 396 ELYMSHSFRHWQFESESEEDSSSNAKFIELGALSRLTSLHIHIPEGKIMPSDM--SFQNLTSFSIAIG 461 (848)
Q Consensus 396 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~ 461 (848)
+|++++|.+... .+..++.+++|+.|++++|.+..++... .+++|+.|++..+
T Consensus 161 ~L~l~~n~l~~~-------------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 161 ELDLSYNQLQSL-------------PEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp EEECCSSCCCCC-------------CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred EEECCCCCcCcc-------------CHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCC
Confidence 888888877653 3344677888888888888887776653 6788888887644
No 80
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.66 E-value=1.2e-16 Score=178.71 Aligned_cols=166 Identities=19% Similarity=0.173 Sum_probs=107.0
Q ss_pred ccccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCCCCchhhhcccCcEEEccCccc
Q 003090 254 CPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLPSSLSFLINLRTLRLHDRRI 333 (848)
Q Consensus 254 ~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~ 333 (848)
+++|++|++++|.+..+++..|..+++|++|++++ |.+.+ .+. ++.+++|++|++++|.+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~--------------N~l~~-----~~~-l~~l~~L~~L~Ls~N~l 92 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS--------------NVLYE-----TLD-LESLSTLRTLDLNNNYV 92 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTT--------------SCCEE-----EEE-CTTCTTCCEEECCSSEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeC--------------CCCCC-----Ccc-cccCCCCCEEEecCCcC
Confidence 34677777777777666655567777777777777 66655 333 67777777777777755
Q ss_pred cCCchhhccccCCCEEEccCCCCcccChhhccCCcccEEeccCCccccccChhhhhccccccEEeccccccccccccccc
Q 003090 334 QGDLSLIGELSGLEILDLSESDVSEIPVSFGRLSHLRLLDLTGCYILELIPRGVLSRLRKLEELYMSHSFRHWQFESESE 413 (848)
Q Consensus 334 ~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 413 (848)
...+ ..++|++|++++|.++.+|. ..+++|++|++++|...+..|.. ++++++|+.|++++|.+...
T Consensus 93 ~~l~----~~~~L~~L~L~~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~------ 159 (487)
T 3oja_A 93 QELL----VGPSIETLHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLD-EGCRSRVQYLDLKLNEIDTV------ 159 (487)
T ss_dssp EEEE----ECTTCCEEECCSSCCCCEEE--CCCSSCEEEECCSSCCCSGGGBC-GGGGSSEEEEECTTSCCCEE------
T ss_pred CCCC----CCCCcCEEECcCCcCCCCCc--cccCCCCEEECCCCCCCCCCchh-hcCCCCCCEEECCCCCCCCc------
Confidence 4433 23677777777777776554 24567777777777665544444 67777777777777776654
Q ss_pred cccCcccchhhhc-ccCCCcEEEeeccCCCCCCCCCccCCCCeEEEE
Q 003090 414 EDSSSNAKFIELG-ALSRLTSLHIHIPEGKIMPSDMSFQNLTSFSIA 459 (848)
Q Consensus 414 ~~~~~~~~~~~L~-~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~ 459 (848)
.+..+. .+++|+.|++++|.++.++....+++|+.|+++
T Consensus 160 -------~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls 199 (487)
T 3oja_A 160 -------NFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLS 199 (487)
T ss_dssp -------EGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECC
T ss_pred -------ChHHHhhhCCcccEEecCCCccccccccccCCCCCEEECC
Confidence 333443 567777777777776655444345555555554
No 81
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.66 E-value=1.8e-16 Score=160.08 Aligned_cols=173 Identities=17% Similarity=0.235 Sum_probs=129.4
Q ss_pred eeeecCCCcccCCcccccccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCC-CCCCCCCCCCc-
Q 003090 238 ISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPP-LPSSPLFLLPS- 315 (848)
Q Consensus 238 l~l~~n~l~~lp~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~-l~~~~~~~lp~- 315 (848)
+.+..+.++.+|. + .+++++|++++|.+..++...|.++++|++|++++ +. +.. +|.
T Consensus 16 ~~v~c~~l~~ip~-~-~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~--------------n~~l~~-----i~~~ 74 (239)
T 2xwt_C 16 FRVTCKDIQRIPS-L-PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSI--------------DVTLQQ-----LESH 74 (239)
T ss_dssp TEEEECSCSSCCC-C-CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEEC--------------CSSCCE-----ECTT
T ss_pred ceeEccCccccCC-C-CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCC--------------CCCcce-----eCHh
Confidence 4444555778887 3 34889999999988888887788899999999998 65 766 543
Q ss_pred hhhhcccCcEEEccC-ccccCCc-hhhccccCCCEEEccCCCCcccChhhccCCccc---EEeccCCccccccChhhhhc
Q 003090 316 SLSFLINLRTLRLHD-RRIQGDL-SLIGELSGLEILDLSESDVSEIPVSFGRLSHLR---LLDLTGCYILELIPRGVLSR 390 (848)
Q Consensus 316 ~~~~l~~L~~L~L~~-~~~~~~~-~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~---~L~l~~~~~~~~~p~~~l~~ 390 (848)
.+..+++|++|++++ |.+...+ ..+..+++|++|++++|.++.+|. +..+++|+ +|++++|.....+|...+.+
T Consensus 75 ~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~ 153 (239)
T 2xwt_C 75 SFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQG 153 (239)
T ss_dssp TEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTT
T ss_pred HcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccc
Confidence 678888999999988 7666655 567888899999999998888886 77788887 88888874455677665788
Q ss_pred ccccc-EEeccccccccccccccccccCcccchhhhcccCCCcEEEeeccC-CCCCCC
Q 003090 391 LRKLE-ELYMSHSFRHWQFESESEEDSSSNAKFIELGALSRLTSLHIHIPE-GKIMPS 446 (848)
Q Consensus 391 l~~L~-~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~-~~~~~~ 446 (848)
+++|+ +|++++|.+... + ...+.. ++|+.|++++|. ++.++.
T Consensus 154 l~~L~~~L~l~~n~l~~i-~------------~~~~~~-~~L~~L~L~~n~~l~~i~~ 197 (239)
T 2xwt_C 154 LCNETLTLKLYNNGFTSV-Q------------GYAFNG-TKLDAVYLNKNKYLTVIDK 197 (239)
T ss_dssp TBSSEEEEECCSCCCCEE-C------------TTTTTT-CEEEEEECTTCTTCCEECT
T ss_pred hhcceeEEEcCCCCCccc-C------------HhhcCC-CCCCEEEcCCCCCcccCCH
Confidence 88888 888888877632 1 112223 678888888773 665544
No 82
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.64 E-value=3.4e-15 Score=153.69 Aligned_cols=176 Identities=23% Similarity=0.290 Sum_probs=150.2
Q ss_pred cCCCceeeecCCCcccCCcccccccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCC
Q 003090 233 LDLTGISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFL 312 (848)
Q Consensus 233 ~~l~~l~l~~n~l~~lp~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 312 (848)
..++.+++++|.+..++....+++|++|++++|.+..++ .+..+++|++|++++ +.+...
T Consensus 41 ~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~--------------n~l~~~---- 100 (272)
T 3rfs_A 41 NSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS--ALKELTNLTYLILTG--------------NQLQSL---- 100 (272)
T ss_dssp TTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECTT--------------SCCCCC----
T ss_pred cceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCch--hhcCCCCCCEEECCC--------------CccCcc----
Confidence 457889999999998887668999999999999888875 368999999999999 888873
Q ss_pred CCchhhhcccCcEEEccCccccCCc-hhhccccCCCEEEccCCCCcccChh-hccCCcccEEeccCCccccccChhhhhc
Q 003090 313 LPSSLSFLINLRTLRLHDRRIQGDL-SLIGELSGLEILDLSESDVSEIPVS-FGRLSHLRLLDLTGCYILELIPRGVLSR 390 (848)
Q Consensus 313 lp~~~~~l~~L~~L~L~~~~~~~~~-~~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~~l~~ 390 (848)
.+..+..+++|++|++++|.+...+ ..++.+++|++|++++|.++.+|.. ++.+++|++|++++|... .+|...++.
T Consensus 101 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~ 179 (272)
T 3rfs_A 101 PNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDK 179 (272)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTT
T ss_pred ChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcC-ccCHHHhcC
Confidence 4455799999999999999888777 4579999999999999999988765 689999999999998765 566655789
Q ss_pred cccccEEeccccccccccccccccccCcccchhhhcccCCCcEEEeeccCCC
Q 003090 391 LRKLEELYMSHSFRHWQFESESEEDSSSNAKFIELGALSRLTSLHIHIPEGK 442 (848)
Q Consensus 391 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~ 442 (848)
+++|++|++++|.+... .+..+..+++|+.|++++|.+.
T Consensus 180 l~~L~~L~L~~N~l~~~-------------~~~~~~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 180 LTQLKDLRLYQNQLKSV-------------PDGVFDRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp CTTCCEEECCSSCCSCC-------------CTTTTTTCTTCCEEECCSSCBC
T ss_pred CccCCEEECCCCcCCcc-------------CHHHHhCCcCCCEEEccCCCcc
Confidence 99999999999988764 3456788999999999999754
No 83
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.64 E-value=2.2e-15 Score=158.05 Aligned_cols=177 Identities=21% Similarity=0.248 Sum_probs=134.6
Q ss_pred ecCCCcccCCcccccccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCCCCchhhhc
Q 003090 241 MFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLPSSLSFL 320 (848)
Q Consensus 241 ~~n~l~~lp~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp~~~~~l 320 (848)
..+.+.++.....+++|++|++++|.+..++. +..+++|++|++++ +.+.. ++. +..+
T Consensus 27 ~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~~--~~~l~~L~~L~L~~--------------n~i~~-----~~~-~~~l 84 (308)
T 1h6u_A 27 GKSNVTDTVTQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKD--------------NQITD-----LAP-LKNL 84 (308)
T ss_dssp TCSSTTSEECHHHHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCS--------------SCCCC-----CGG-GTTC
T ss_pred CCCCcCceecHHHcCCcCEEEeeCCCccCchh--hhccCCCCEEEccC--------------CcCCC-----Chh-HccC
Confidence 34444444444467889999999998888874 57899999999998 77877 666 8889
Q ss_pred ccCcEEEccCccccCCchhhccccCCCEEEccCCCCcccChhhccCCcccEEeccCCccccccChhhhhccccccEEecc
Q 003090 321 INLRTLRLHDRRIQGDLSLIGELSGLEILDLSESDVSEIPVSFGRLSHLRLLDLTGCYILELIPRGVLSRLRKLEELYMS 400 (848)
Q Consensus 321 ~~L~~L~L~~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~ 400 (848)
++|++|++++|.+.. ++.+..+++|++|++++|.++.+|. +..+++|++|++++|... .++. ++.+++|+.|+++
T Consensus 85 ~~L~~L~L~~n~l~~-~~~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~-~~~~--l~~l~~L~~L~l~ 159 (308)
T 1h6u_A 85 TKITELELSGNPLKN-VSAIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQIT-NISP--LAGLTNLQYLSIG 159 (308)
T ss_dssp CSCCEEECCSCCCSC-CGGGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCC-CCGG--GGGCTTCCEEECC
T ss_pred CCCCEEEccCCcCCC-chhhcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCccC-cCcc--ccCCCCccEEEcc
Confidence 999999999997554 4578889999999999999888775 888999999999987654 4555 7888999999999
Q ss_pred ccccccccccccccccCcccchhhhcccCCCcEEEeeccCCCCCCCCCccCCCCeEEEE
Q 003090 401 HSFRHWQFESESEEDSSSNAKFIELGALSRLTSLHIHIPEGKIMPSDMSFQNLTSFSIA 459 (848)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~ 459 (848)
+|.+... ..+..+++|+.|++++|.+..++....+++|+.|++.
T Consensus 160 ~n~l~~~---------------~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~ 203 (308)
T 1h6u_A 160 NAQVSDL---------------TPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLK 203 (308)
T ss_dssp SSCCCCC---------------GGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECT
T ss_pred CCcCCCC---------------hhhcCCCCCCEEECCCCccCcChhhcCCCCCCEEEcc
Confidence 8877642 2278888999999988887766542244445544443
No 84
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.61 E-value=1.3e-15 Score=170.29 Aligned_cols=201 Identities=18% Similarity=0.179 Sum_probs=145.2
Q ss_pred CchhHHHHHHHhcc----CCCceeeecCCCcccCC-cc-cccccceeecccCcCcccChHHHccCCceeEEEccCccccc
Q 003090 220 PSITKIQYEIAGWL----DLTGISLMFNDIHEVPD-EL-ECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFS 293 (848)
Q Consensus 220 ~~~~~l~~~i~~~~----~l~~l~l~~n~l~~lp~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~ 293 (848)
.....++..+.... .++.|++++|.+..+++ .+ .+++|++|++++|.+...++ +..+++|++|++++
T Consensus 17 ~~~~~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~----- 89 (487)
T 3oja_A 17 VTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN----- 89 (487)
T ss_dssp CCTTTHHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCS-----
T ss_pred CchhhhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecC-----
Confidence 34456666666665 68999999999998875 44 89999999999998877665 68999999999999
Q ss_pred ccccCCCCCCCCCCCCCCCCCchhhhcccCcEEEccCccccCCchhhccccCCCEEEccCCCCccc-ChhhccCCcccEE
Q 003090 294 FSVRFPFLFPPLPSSPLFLLPSSLSFLINLRTLRLHDRRIQGDLSLIGELSGLEILDLSESDVSEI-PVSFGRLSHLRLL 372 (848)
Q Consensus 294 ~~~~~~~~~~~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~~i~~l~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L 372 (848)
|.+.+ +|. .++|++|++++|.+...+. ..+++|++|++++|.++.+ |..++.+++|++|
T Consensus 90 ---------N~l~~-----l~~----~~~L~~L~L~~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 149 (487)
T 3oja_A 90 ---------NYVQE-----LLV----GPSIETLHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYL 149 (487)
T ss_dssp ---------SEEEE-----EEE----CTTCCEEECCSSCCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEE
T ss_pred ---------CcCCC-----CCC----CCCcCEEECcCCcCCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEE
Confidence 65555 442 2677888888876665543 2456778888888877755 4467777788888
Q ss_pred eccCCccccccChhhhhccccccEEeccccccccccccccccccCcccchhhhcccCCCcEEEeeccCCCCCCCCC-ccC
Q 003090 373 DLTGCYILELIPRGVLSRLRKLEELYMSHSFRHWQFESESEEDSSSNAKFIELGALSRLTSLHIHIPEGKIMPSDM-SFQ 451 (848)
Q Consensus 373 ~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~-~~~ 451 (848)
++++|.+.+..|..+...+++|++|++++|.+... .....+++|+.|++++|.++.+|..+ .++
T Consensus 150 ~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~---------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~ 214 (487)
T 3oja_A 150 DLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV---------------KGQVVFAKLKTLDLSSNKLAFMGPEFQSAA 214 (487)
T ss_dssp ECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE---------------ECCCCCTTCCEEECCSSCCCEECGGGGGGT
T ss_pred ECCCCCCCCcChHHHhhhCCcccEEecCCCccccc---------------cccccCCCCCEEECCCCCCCCCCHhHcCCC
Confidence 88877766656665333677888888887776543 22335777777777777777776666 677
Q ss_pred CCCeEEEEeCC
Q 003090 452 NLTSFSIAIGD 462 (848)
Q Consensus 452 ~L~~L~l~~~~ 462 (848)
+|+.|+++.+.
T Consensus 215 ~L~~L~Ls~N~ 225 (487)
T 3oja_A 215 GVTWISLRNNK 225 (487)
T ss_dssp TCSEEECTTSC
T ss_pred CccEEEecCCc
Confidence 77777776544
No 85
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.61 E-value=3.3e-15 Score=155.03 Aligned_cols=175 Identities=22% Similarity=0.242 Sum_probs=151.1
Q ss_pred cccccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCCCCchhhhcccCcEEEccCcc
Q 003090 253 ECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLPSSLSFLINLRTLRLHDRR 332 (848)
Q Consensus 253 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp~~~~~l~~L~~L~L~~~~ 332 (848)
.++++++++++++.+..+|..+ .+++++|++++ +.+... .|..+..+++|++|++++|.
T Consensus 8 ~l~~l~~l~~~~~~l~~ip~~~---~~~l~~L~L~~--------------N~l~~~----~~~~~~~l~~L~~L~L~~n~ 66 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTALPPDL---PKDTTILHLSE--------------NLLYTF----SLATLMPYTRLTQLNLDRAE 66 (290)
T ss_dssp CSTTCCEEECTTSCCSSCCSCC---CTTCCEEECTT--------------SCCSEE----EGGGGTTCTTCCEEECTTSC
T ss_pred ccCCccEEECCCCCCCcCCCCC---CCCCCEEEcCC--------------CcCCcc----CHHHhhcCCCCCEEECCCCc
Confidence 5788999999999999999764 36899999999 888774 46789999999999999997
Q ss_pred ccCCchhhccccCCCEEEccCCCCcccChhhccCCcccEEeccCCccccccChhhhhccccccEEecccccccccccccc
Q 003090 333 IQGDLSLIGELSGLEILDLSESDVSEIPVSFGRLSHLRLLDLTGCYILELIPRGVLSRLRKLEELYMSHSFRHWQFESES 412 (848)
Q Consensus 333 ~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 412 (848)
+...+. .+.+++|++|++++|.++.+|..+..+++|++|++++|.+. .+|.+.+.++++|++|++++|.+...
T Consensus 67 l~~~~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~~~----- 139 (290)
T 1p9a_G 67 LTKLQV-DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTL----- 139 (290)
T ss_dssp CCEEEC-CSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCC-CCCSSTTTTCTTCCEEECTTSCCCCC-----
T ss_pred cCcccC-CCCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCc-ccCHHHHcCCCCCCEEECCCCCCCcc-----
Confidence 766544 38999999999999999999999999999999999998765 56655589999999999999988754
Q ss_pred ccccCcccchhhhcccCCCcEEEeeccCCCCCCCCC--ccCCCCeEEEEeCCC
Q 003090 413 EEDSSSNAKFIELGALSRLTSLHIHIPEGKIMPSDM--SFQNLTSFSIAIGDL 463 (848)
Q Consensus 413 ~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~ 463 (848)
.+..+..+++|+.|++++|.++.++... .+++|+.|++..+..
T Consensus 140 --------~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l 184 (290)
T 1p9a_G 140 --------PPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184 (290)
T ss_dssp --------CTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCC
T ss_pred --------ChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcC
Confidence 3345788999999999999999998876 789999999986655
No 86
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.60 E-value=1e-14 Score=151.49 Aligned_cols=143 Identities=29% Similarity=0.374 Sum_probs=67.9
Q ss_pred CCceeeecCCCcccCCcccccccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCCCC
Q 003090 235 LTGISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLP 314 (848)
Q Consensus 235 l~~l~l~~n~l~~lp~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp 314 (848)
++.+++++|.+..++....+++|++|++++|.+..++. +.++++|++|++++ +.+.. +|
T Consensus 48 L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~--------------n~l~~-----~~ 106 (291)
T 1h6t_A 48 IDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDE--------------NKVKD-----LS 106 (291)
T ss_dssp CCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCS--------------SCCCC-----GG
T ss_pred ccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCC--------------CcCCC-----Ch
Confidence 34455555555544432244555555555554444443 34555555555555 44443 33
Q ss_pred chhhhcccCcEEEccCccccCCchhhccccCCCEEEccCCCCcccChhhccCCcccEEeccCCccccccChhhhhccccc
Q 003090 315 SSLSFLINLRTLRLHDRRIQGDLSLIGELSGLEILDLSESDVSEIPVSFGRLSHLRLLDLTGCYILELIPRGVLSRLRKL 394 (848)
Q Consensus 315 ~~~~~l~~L~~L~L~~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~l~~l~~L 394 (848)
. +..+++|++|++++|.+.. ++.+..+++|++|++++|.++.+ ..++.+++|++|++++|.... ++. +..+++|
T Consensus 107 ~-l~~l~~L~~L~L~~n~i~~-~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~-~~~--l~~l~~L 180 (291)
T 1h6t_A 107 S-LKDLKKLKSLSLEHNGISD-INGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISD-IVP--LAGLTKL 180 (291)
T ss_dssp G-GTTCTTCCEEECTTSCCCC-CGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCC-CGG--GTTCTTC
T ss_pred h-hccCCCCCEEECCCCcCCC-ChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCcccc-chh--hcCCCcc
Confidence 2 4455555555555553333 23444555555555555555444 244455555555555543322 222 4455555
Q ss_pred cEEecccccc
Q 003090 395 EELYMSHSFR 404 (848)
Q Consensus 395 ~~L~l~~~~~ 404 (848)
+.|++++|.+
T Consensus 181 ~~L~L~~N~i 190 (291)
T 1h6t_A 181 QNLYLSKNHI 190 (291)
T ss_dssp CEEECCSSCC
T ss_pred CEEECCCCcC
Confidence 5555555544
No 87
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.59 E-value=1.1e-14 Score=151.17 Aligned_cols=183 Identities=22% Similarity=0.270 Sum_probs=154.5
Q ss_pred eeecCCCcccCCcccccccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCCCCchhh
Q 003090 239 SLMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLPSSLS 318 (848)
Q Consensus 239 ~l~~n~l~~lp~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp~~~~ 318 (848)
.+..+.+..+.....+++|+.|++++|.+..++. +..+++|++|++++ +.+.. ++. +.
T Consensus 30 ~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~--~~~l~~L~~L~L~~--------------n~l~~-----~~~-l~ 87 (291)
T 1h6t_A 30 NLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNG--------------NKLTD-----IKP-LA 87 (291)
T ss_dssp HTTCSCTTSEECHHHHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCS--------------SCCCC-----CGG-GT
T ss_pred HhcCCCcccccchhhcCcccEEEccCCCcccChh--HhcCCCCCEEEccC--------------CccCC-----Ccc-cc
Confidence 3445555555544578999999999999988875 68899999999999 88888 666 99
Q ss_pred hcccCcEEEccCccccCCchhhccccCCCEEEccCCCCcccChhhccCCcccEEeccCCccccccChhhhhccccccEEe
Q 003090 319 FLINLRTLRLHDRRIQGDLSLIGELSGLEILDLSESDVSEIPVSFGRLSHLRLLDLTGCYILELIPRGVLSRLRKLEELY 398 (848)
Q Consensus 319 ~l~~L~~L~L~~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~ 398 (848)
.+++|++|++++|.+.. ++.+..+++|++|++++|.++.++ .+..+++|++|++++|.... ++ . ++.+++|++|+
T Consensus 88 ~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~l~~-~~-~-l~~l~~L~~L~ 162 (291)
T 1h6t_A 88 NLKNLGWLFLDENKVKD-LSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITD-IT-V-LSRLTKLDTLS 162 (291)
T ss_dssp TCTTCCEEECCSSCCCC-GGGGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSCCCC-CG-G-GGGCTTCSEEE
T ss_pred cCCCCCEEECCCCcCCC-ChhhccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCCcCCc-ch-h-hccCCCCCEEE
Confidence 99999999999997655 566999999999999999999885 68999999999999987654 54 3 89999999999
Q ss_pred ccccccccccccccccccCcccchhhhcccCCCcEEEeeccCCCCCCCCCccCCCCeEEEEeCCC
Q 003090 399 MSHSFRHWQFESESEEDSSSNAKFIELGALSRLTSLHIHIPEGKIMPSDMSFQNLTSFSIAIGDL 463 (848)
Q Consensus 399 l~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~ 463 (848)
+++|.+... + .+..+++|+.|++++|.++.++....+++|+.|++..+..
T Consensus 163 L~~N~l~~~--------------~-~l~~l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 163 LEDNQISDI--------------V-PLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQEC 212 (291)
T ss_dssp CCSSCCCCC--------------G-GGTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEEEEEE
T ss_pred ccCCccccc--------------h-hhcCCCccCEEECCCCcCCCChhhccCCCCCEEECcCCcc
Confidence 999988653 2 2889999999999999999887633899999999986654
No 88
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.58 E-value=1.5e-15 Score=159.73 Aligned_cols=87 Identities=15% Similarity=0.120 Sum_probs=39.8
Q ss_pred hhcccCcEEEccCccccCCc-----hhhccccCCCEEEccCCCCcccC-hhhccCCcccEEeccCCccccc--cC-hhhh
Q 003090 318 SFLINLRTLRLHDRRIQGDL-----SLIGELSGLEILDLSESDVSEIP-VSFGRLSHLRLLDLTGCYILEL--IP-RGVL 388 (848)
Q Consensus 318 ~~l~~L~~L~L~~~~~~~~~-----~~i~~l~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~~~--~p-~~~l 388 (848)
..+++|++|++++|.+.... ..+..+++|++|++++|.+..+| ..++.+++|++|++++|...+. ++ ...+
T Consensus 114 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 193 (310)
T 4glp_A 114 ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCP 193 (310)
T ss_dssp CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCT
T ss_pred ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhh
Confidence 45555555555555444321 12234555555555555555333 3444555555555555543321 11 1112
Q ss_pred hccccccEEecccccc
Q 003090 389 SRLRKLEELYMSHSFR 404 (848)
Q Consensus 389 ~~l~~L~~L~l~~~~~ 404 (848)
+.+++|++|++++|.+
T Consensus 194 ~~l~~L~~L~Ls~N~l 209 (310)
T 4glp_A 194 HKFPAIQNLALRNTGM 209 (310)
T ss_dssp TSSCCCCSCBCCSSCC
T ss_pred hcCCCCCEEECCCCCC
Confidence 3455555555555544
No 89
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.58 E-value=4e-15 Score=156.54 Aligned_cols=196 Identities=15% Similarity=0.083 Sum_probs=155.5
Q ss_pred ccCCCceeeecCCCccc-CCc---ccccccceeecccCcCccc----ChHHHccCCceeEEEccCcccccccccCCCCCC
Q 003090 232 WLDLTGISLMFNDIHEV-PDE---LECPKLQALFLQENSPLAI----PDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFP 303 (848)
Q Consensus 232 ~~~l~~l~l~~n~l~~l-p~~---~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~ 303 (848)
...++.|++++|.+... |.. ..+++|++|++++|.+... +...+..+++|++|++++ +
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~--------------n 155 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQ--------------A 155 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEEC--------------C
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeC--------------C
Confidence 34589999999999844 444 4689999999999977652 223345799999999999 8
Q ss_pred CCCCCCCCCCCchhhhcccCcEEEccCccccCC---c--hhhccccCCCEEEccCCCCcccChh----hccCCcccEEec
Q 003090 304 PLPSSPLFLLPSSLSFLINLRTLRLHDRRIQGD---L--SLIGELSGLEILDLSESDVSEIPVS----FGRLSHLRLLDL 374 (848)
Q Consensus 304 ~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~---~--~~i~~l~~L~~L~l~~~~l~~lp~~----i~~L~~L~~L~l 374 (848)
.+... .|..++.+++|++|++++|.+.+. + ..++.+++|++|++++|.++.+|.. ++.+++|++|++
T Consensus 156 ~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~L 231 (310)
T 4glp_A 156 HSPAF----SCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDL 231 (310)
T ss_dssp SSCCC----CTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEEC
T ss_pred Ccchh----hHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEEC
Confidence 88774 557889999999999999986542 2 3347899999999999999877653 578899999999
Q ss_pred cCCccccccChhhhhcc---ccccEEeccccccccccccccccccCcccchhhhcccCCCcEEEeeccCCCCCCCCCccC
Q 003090 375 TGCYILELIPRGVLSRL---RKLEELYMSHSFRHWQFESESEEDSSSNAKFIELGALSRLTSLHIHIPEGKIMPSDMSFQ 451 (848)
Q Consensus 375 ~~~~~~~~~p~~~l~~l---~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~ 451 (848)
++|......|.. +..+ ++|++|++++|.+.. .+..+. ++|+.|++++|.++.+|....++
T Consensus 232 s~N~l~~~~p~~-~~~~~~~~~L~~L~Ls~N~l~~--------------lp~~~~--~~L~~L~Ls~N~l~~~~~~~~l~ 294 (310)
T 4glp_A 232 SHNSLRATVNPS-APRCMWSSALNSLNLSFAGLEQ--------------VPKGLP--AKLRVLDLSSNRLNRAPQPDELP 294 (310)
T ss_dssp TTSCCCCCCCSC-CSSCCCCTTCCCEECCSSCCCS--------------CCSCCC--SCCSCEECCSCCCCSCCCTTSCC
T ss_pred CCCCCCccchhh-HHhccCcCcCCEEECCCCCCCc--------------hhhhhc--CCCCEEECCCCcCCCCchhhhCC
Confidence 999887766776 5666 699999999999873 223332 79999999999999886644889
Q ss_pred CCCeEEEEeCC
Q 003090 452 NLTSFSIAIGD 462 (848)
Q Consensus 452 ~L~~L~l~~~~ 462 (848)
+|+.|++..+.
T Consensus 295 ~L~~L~L~~N~ 305 (310)
T 4glp_A 295 EVDNLTLDGNP 305 (310)
T ss_dssp CCSCEECSSTT
T ss_pred CccEEECcCCC
Confidence 99999987544
No 90
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.57 E-value=1.2e-15 Score=166.07 Aligned_cols=198 Identities=17% Similarity=0.120 Sum_probs=117.7
Q ss_pred chhHHHHHHHhccCCCceeeecCCCcc-----cCCcc-cccccceeecccCcCcc----cChHH------HccCCceeEE
Q 003090 221 SITKIQYEIAGWLDLTGISLMFNDIHE-----VPDEL-ECPKLQALFLQENSPLA----IPDRF------FQGMKDLQVL 284 (848)
Q Consensus 221 ~~~~l~~~i~~~~~l~~l~l~~n~l~~-----lp~~~-~~~~L~~L~l~~~~~~~----~~~~~------~~~~~~Lr~L 284 (848)
++..+...+.....++.|++++|.+.. ++..+ .+++|++|++++|.+.. +|..+ +..+++|++|
T Consensus 20 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L 99 (386)
T 2ca6_A 20 DEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTV 99 (386)
T ss_dssp HHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEE
T ss_pred HHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEE
Confidence 344555555556667777777777663 22223 56777777777764432 23332 3567777777
Q ss_pred EccCcccccccccCCCCCCCCCCCCCCCCCchhhhcccCcEEEccCccccCCc-----hhhccc---------cCCCEEE
Q 003090 285 DLGGIRRFSFSVRFPFLFPPLPSSPLFLLPSSLSFLINLRTLRLHDRRIQGDL-----SLIGEL---------SGLEILD 350 (848)
Q Consensus 285 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~~-----~~i~~l---------~~L~~L~ 350 (848)
++++ +.+.......+|..+..+++|++|++++|.+.... ..+..+ ++|++|+
T Consensus 100 ~Ls~--------------n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~ 165 (386)
T 2ca6_A 100 RLSD--------------NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSII 165 (386)
T ss_dssp ECCS--------------CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEE
T ss_pred ECCC--------------CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEE
Confidence 7777 55555211125566677777777777777654321 223333 6777777
Q ss_pred ccCCCCc--ccC---hhhccCCcccEEeccCCcccc-----ccChhhhhccccccEEeccccccccccccccccccCccc
Q 003090 351 LSESDVS--EIP---VSFGRLSHLRLLDLTGCYILE-----LIPRGVLSRLRKLEELYMSHSFRHWQFESESEEDSSSNA 420 (848)
Q Consensus 351 l~~~~l~--~lp---~~i~~L~~L~~L~l~~~~~~~-----~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 420 (848)
+++|.+. .+| ..+..+++|++|++++|.... ..|.. +.++++|+.|++++|.+... ....
T Consensus 166 L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~-l~~~~~L~~L~Ls~n~l~~~---------g~~~ 235 (386)
T 2ca6_A 166 CGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEG-LAYCQELKVLDLQDNTFTHL---------GSSA 235 (386)
T ss_dssp CCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTT-GGGCTTCCEEECCSSCCHHH---------HHHH
T ss_pred CCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHH-hhcCCCccEEECcCCCCCcH---------HHHH
Confidence 7777765 344 356667777777777765431 12213 56777777777777766421 0112
Q ss_pred chhhhcccCCCcEEEeeccCCC
Q 003090 421 KFIELGALSRLTSLHIHIPEGK 442 (848)
Q Consensus 421 ~~~~L~~l~~L~~L~l~~~~~~ 442 (848)
.+..+..+++|+.|++++|.+.
T Consensus 236 l~~~l~~~~~L~~L~L~~n~i~ 257 (386)
T 2ca6_A 236 LAIALKSWPNLRELGLNDCLLS 257 (386)
T ss_dssp HHHHGGGCTTCCEEECTTCCCC
T ss_pred HHHHHccCCCcCEEECCCCCCc
Confidence 4456667777777777777654
No 91
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.57 E-value=2e-14 Score=153.87 Aligned_cols=250 Identities=15% Similarity=0.122 Sum_probs=157.1
Q ss_pred CchhhhcccCcEEEccCccccCCchhhccccCCCEEEccCCCCcccCh-hhccCCcccEEeccCCccccccChhhhhccc
Q 003090 314 PSSLSFLINLRTLRLHDRRIQGDLSLIGELSGLEILDLSESDVSEIPV-SFGRLSHLRLLDLTGCYILELIPRGVLSRLR 392 (848)
Q Consensus 314 p~~~~~l~~L~~L~L~~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~~l~~l~ 392 (848)
|..++.+.. ++++.+++++...|..+ ..++++|++++|+|+.+|. .+.++++|++|++++|...+.+|.+.+.+++
T Consensus 3 p~~~C~C~~-~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~ 79 (350)
T 4ay9_X 3 HHRICHCSN-RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLP 79 (350)
T ss_dssp CCSSSEEET-TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCT
T ss_pred CCCccEeeC-CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcch
Confidence 444444543 56777777777777655 3678999999999998886 4788999999999998877778877678888
Q ss_pred cccEE-eccccccccccccccccccCcccchhhhcccCCCcEEEeeccCCCCCCCCCccCCCCeEEEEeCCCCCCCCCcc
Q 003090 393 KLEEL-YMSHSFRHWQFESESEEDSSSNAKFIELGALSRLTSLHIHIPEGKIMPSDMSFQNLTSFSIAIGDLEERPLSDF 471 (848)
Q Consensus 393 ~L~~L-~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 471 (848)
+|+++ .+.+|.+... .+..++.+++|+.|++++|.+..++.......
T Consensus 80 ~l~~~l~~~~N~l~~l-------------~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~------------------- 127 (350)
T 4ay9_X 80 KLHEIRIEKANNLLYI-------------NPEAFQNLPNLQYLLISNTGIKHLPDVHKIHS------------------- 127 (350)
T ss_dssp TCCEEEEEEETTCCEE-------------CTTSBCCCTTCCEEEEEEECCSSCCCCTTCCB-------------------
T ss_pred hhhhhhcccCCccccc-------------CchhhhhccccccccccccccccCCchhhccc-------------------
Confidence 87764 4455666544 34567888888888888888776654321111
Q ss_pred cceEEecccccccccccCccccchhhHHHHHHHHHhhcceeeeccccccccccccccccCCCCCcEEEEecCCCceeecc
Q 003090 472 IGLFLQKFKKRCSRAMGLSQDMRISALHSWIKNLLLRSEILALAEVNYFENIVSDLANDGFNELMFLVIFRCNEMKYLLN 551 (848)
Q Consensus 472 ~~l~l~~~~~~c~~~~~l~~~~~l~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~l~~ 551 (848)
.++..|.+.++..++.++.
T Consensus 128 -------------------------------------------------------------~~l~~l~l~~~~~i~~l~~ 146 (350)
T 4ay9_X 128 -------------------------------------------------------------LQKVLLDIQDNINIHTIER 146 (350)
T ss_dssp -------------------------------------------------------------SSCEEEEEESCTTCCEECT
T ss_pred -------------------------------------------------------------chhhhhhhccccccccccc
Confidence 2223333333333332210
Q ss_pred ccccccccc-CCCccEEecccccccccccccccccccCCCcceEEEecCchhhHhhhHHHHHhhccCcEEEEeccCCcee
Q 003090 552 SLERTLRVT-LHKLEWLFIRENQNFVEICHGQLPAGCLSNVKRSDVVDCGSILKILLSHLVQSFQNLQRLRVYSCGLLVS 630 (848)
Q Consensus 552 ~~~~~~~~~-~p~L~~L~l~~~~~L~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~l~~~~~~~l~~L~~L~l~~c~~l~~ 630 (848)
. .... ...|+.|+++++ +++.+..+. ...++|++|.+.++..+ +.+|...+..+++|++|+++++ .++.
T Consensus 147 ~----~f~~~~~~l~~L~L~~N-~i~~i~~~~---f~~~~L~~l~l~~~n~l-~~i~~~~f~~l~~L~~LdLs~N-~l~~ 216 (350)
T 4ay9_X 147 N----SFVGLSFESVILWLNKN-GIQEIHNSA---FNGTQLDELNLSDNNNL-EELPNDVFHGASGPVILDISRT-RIHS 216 (350)
T ss_dssp T----SSTTSBSSCEEEECCSS-CCCEECTTS---STTEEEEEEECTTCTTC-CCCCTTTTTTEECCSEEECTTS-CCCC
T ss_pred c----chhhcchhhhhhccccc-cccCCChhh---ccccchhHHhhccCCcc-cCCCHHHhccCcccchhhcCCC-CcCc
Confidence 0 0111 134555555555 344331111 12356677777776777 7777655567777888888776 4666
Q ss_pred eeeccccccccccccccCCcCEEecCCCccccccccCCCccccccCccEEEeec
Q 003090 631 VFEIERVNIAKEETELFSSLEKLTLWDLPRMTDIWKGDTQFVSLHNLKKVRVEE 684 (848)
Q Consensus 631 ~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~l~~l~~L~~L~i~~ 684 (848)
+|. ..|.+|+.|.+.++.+++.+|. +..+++|+.+++.+
T Consensus 217 lp~-----------~~~~~L~~L~~l~~~~l~~lP~----l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 217 LPS-----------YGLENLKKLRARSTYNLKKLPT----LEKLVALMEASLTY 255 (350)
T ss_dssp CCS-----------SSCTTCCEEECTTCTTCCCCCC----TTTCCSCCEEECSC
T ss_pred cCh-----------hhhccchHhhhccCCCcCcCCC----chhCcChhhCcCCC
Confidence 642 2467777777777777777763 45677888877753
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.56 E-value=2.6e-14 Score=145.18 Aligned_cols=173 Identities=22% Similarity=0.293 Sum_probs=147.6
Q ss_pred cccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCCCCchhhhcccCcEEEccCcccc
Q 003090 255 PKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLPSSLSFLINLRTLRLHDRRIQ 334 (848)
Q Consensus 255 ~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~ 334 (848)
...++++++++.+..+|..+ .++++.|++++ +.+... .+..+..+++|++|++++|.+.
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~---~~~l~~L~L~~--------------n~l~~~----~~~~~~~l~~L~~L~L~~n~l~ 72 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGI---PADTEKLDLQS--------------TGLATL----SDATFRGLTKLTWLNLDYNQLQ 72 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCC---CTTCCEEECTT--------------SCCCCC----CTTTTTTCTTCCEEECTTSCCC
T ss_pred CCCeEEecCCCCccccCCCC---CCCCCEEEccC--------------CCcCcc----CHhHhcCcccCCEEECCCCcCC
Confidence 56788999999999999764 36899999999 888884 5567999999999999999888
Q ss_pred CCc-hhhccccCCCEEEccCCCCcccCh-hhccCCcccEEeccCCccccccChhhhhccccccEEecccccccccccccc
Q 003090 335 GDL-SLIGELSGLEILDLSESDVSEIPV-SFGRLSHLRLLDLTGCYILELIPRGVLSRLRKLEELYMSHSFRHWQFESES 412 (848)
Q Consensus 335 ~~~-~~i~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 412 (848)
..+ ..+..+++|++|++++|.++.+|. .+..+++|++|++++|.+. .+|...+..+++|++|++++|.+...
T Consensus 73 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~----- 146 (251)
T 3m19_A 73 TLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSI----- 146 (251)
T ss_dssp CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCC-----
T ss_pred ccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCC-CcChhHhccCCcccEEECcCCcCCcc-----
Confidence 876 568999999999999999998875 4689999999999998664 57766578999999999999988754
Q ss_pred ccccCcccchhhhcccCCCcEEEeeccCCCCCCCCC--ccCCCCeEEEEeCC
Q 003090 413 EEDSSSNAKFIELGALSRLTSLHIHIPEGKIMPSDM--SFQNLTSFSIAIGD 462 (848)
Q Consensus 413 ~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~ 462 (848)
.+..++.+++|+.|++++|.+..++... .+++|+.|++..+.
T Consensus 147 --------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 147 --------PAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp --------CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred --------CHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCc
Confidence 3346889999999999999999888754 78999999987554
No 93
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.56 E-value=1.3e-14 Score=154.84 Aligned_cols=130 Identities=23% Similarity=0.156 Sum_probs=101.4
Q ss_pred CceeEEEccCcccccccccCCCCCCCCCCCCCCCCCchhhhc--ccCcEEEccCccccCCchhhccccCCCEEEccCCCC
Q 003090 279 KDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLPSSLSFL--INLRTLRLHDRRIQGDLSLIGELSGLEILDLSESDV 356 (848)
Q Consensus 279 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp~~~~~l--~~L~~L~L~~~~~~~~~~~i~~l~~L~~L~l~~~~l 356 (848)
..++.+++++ +.+. |..+..+ .++++|+++++.+...++.+..+++|++|++++|.+
T Consensus 47 ~~~~~l~l~~--------------~~~~-------~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l 105 (336)
T 2ast_B 47 SLWQTLDLTG--------------KNLH-------PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVI 105 (336)
T ss_dssp TTSSEEECTT--------------CBCC-------HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEE
T ss_pred hhheeecccc--------------ccCC-------HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCc
Confidence 3478888888 5543 3557777 889999999998887777788899999999999988
Q ss_pred c-c-cChhhccCCcccEEeccCCccccccChhhhhccccccEEecccc-ccccccccccccccCcccchhhhcccCCCcE
Q 003090 357 S-E-IPVSFGRLSHLRLLDLTGCYILELIPRGVLSRLRKLEELYMSHS-FRHWQFESESEEDSSSNAKFIELGALSRLTS 433 (848)
Q Consensus 357 ~-~-lp~~i~~L~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~ 433 (848)
. . +|..+.++++|++|++++|......+.. ++++++|++|++++| .+... ..+..+..+++|++
T Consensus 106 ~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~-l~~~~~L~~L~L~~~~~l~~~------------~l~~~~~~~~~L~~ 172 (336)
T 2ast_B 106 EVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSEF------------ALQTLLSSCSRLDE 172 (336)
T ss_dssp CHHHHHHHHTTBCCCSEEECTTCBCCHHHHHH-HTTCTTCSEEECTTCBSCCHH------------HHHHHHHHCTTCCE
T ss_pred CHHHHHHHHhhCCCCCEEeCcCcccCHHHHHH-HhcCCCCCEEECCCCCCCCHH------------HHHHHHhcCCCCCE
Confidence 7 2 7888889999999999998766666666 788999999999988 44431 13455778888888
Q ss_pred EEeecc-CCC
Q 003090 434 LHIHIP-EGK 442 (848)
Q Consensus 434 L~l~~~-~~~ 442 (848)
|++++| .++
T Consensus 173 L~l~~~~~l~ 182 (336)
T 2ast_B 173 LNLSWCFDFT 182 (336)
T ss_dssp EECCCCTTCC
T ss_pred EcCCCCCCcC
Confidence 888877 543
No 94
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.56 E-value=1.1e-14 Score=155.79 Aligned_cols=179 Identities=16% Similarity=0.124 Sum_probs=113.7
Q ss_pred CceeeecCCCcccCCcccccccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCCCC-
Q 003090 236 TGISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLP- 314 (848)
Q Consensus 236 ~~l~l~~n~l~~lp~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp- 314 (848)
+.++.+++.++++|..+ .+++++|++++|.+..+|...|.++++|++|+|++ |.+.+. +|
T Consensus 12 ~~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~--------------N~i~~~----i~~ 72 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQ--------------NDVLEV----IEA 72 (350)
T ss_dssp TEEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEEC--------------CTTCCE----ECT
T ss_pred CEEEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcC--------------CCCCCc----cCh
Confidence 45667777888888766 35788888888888888877778888888888888 665442 43
Q ss_pred chhhhcccCcE-EEccCccccCCc-hhhccccCCCEEEccCCCCcccCh-hhccCCcccEEeccCCccccccChhhhhcc
Q 003090 315 SSLSFLINLRT-LRLHDRRIQGDL-SLIGELSGLEILDLSESDVSEIPV-SFGRLSHLRLLDLTGCYILELIPRGVLSRL 391 (848)
Q Consensus 315 ~~~~~l~~L~~-L~L~~~~~~~~~-~~i~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~~l~~l 391 (848)
..|.++++|+. +.+.+|++...+ ..+..+++|++|++++|.+..+|. .+....++..|++.++.....+|...+..+
T Consensus 73 ~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~ 152 (350)
T 4ay9_X 73 DVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGL 152 (350)
T ss_dssp TSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTS
T ss_pred hHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhc
Confidence 34567776654 445555555554 556777788888888777776654 344555677777766555666665444444
Q ss_pred c-cccEEeccccccccccccccccccCcccchhhhcccCCCcEEEeec-cCCCCCCCC
Q 003090 392 R-KLEELYMSHSFRHWQFESESEEDSSSNAKFIELGALSRLTSLHIHI-PEGKIMPSD 447 (848)
Q Consensus 392 ~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~-~~~~~~~~~ 447 (848)
. .++.|++++|.+... +.......+|+.|++.+ |.++.+|..
T Consensus 153 ~~~l~~L~L~~N~i~~i--------------~~~~f~~~~L~~l~l~~~n~l~~i~~~ 196 (350)
T 4ay9_X 153 SFESVILWLNKNGIQEI--------------HNSAFNGTQLDELNLSDNNNLEELPND 196 (350)
T ss_dssp BSSCEEEECCSSCCCEE--------------CTTSSTTEEEEEEECTTCTTCCCCCTT
T ss_pred chhhhhhccccccccCC--------------ChhhccccchhHHhhccCCcccCCCHH
Confidence 3 466677777666532 22223334566666653 445555543
No 95
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.55 E-value=5.8e-16 Score=168.65 Aligned_cols=171 Identities=18% Similarity=0.170 Sum_probs=107.0
Q ss_pred ccCCcc-cccccceeecccCcCcccChH----HHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCCCCchh----
Q 003090 247 EVPDEL-ECPKLQALFLQENSPLAIPDR----FFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLPSSL---- 317 (848)
Q Consensus 247 ~lp~~~-~~~~L~~L~l~~~~~~~~~~~----~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp~~~---- 317 (848)
.++..+ .+++|++|++++|.++..... .+..+++|++|++++|... .+.+. +|..+
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~-----------~l~~~----~~~~~~~l~ 87 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTG-----------RVKDE----IPEALRLLL 87 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTT-----------SCGGG----SHHHHHHHH
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccC-----------ccccc----hhHHHHHHH
Confidence 455555 678888888888866543221 2457888888888884221 12211 33333
Q ss_pred ---hhcccCcEEEccCccccCC-----chhhccccCCCEEEccCCCCc-----ccChhhccC---------CcccEEecc
Q 003090 318 ---SFLINLRTLRLHDRRIQGD-----LSLIGELSGLEILDLSESDVS-----EIPVSFGRL---------SHLRLLDLT 375 (848)
Q Consensus 318 ---~~l~~L~~L~L~~~~~~~~-----~~~i~~l~~L~~L~l~~~~l~-----~lp~~i~~L---------~~L~~L~l~ 375 (848)
..+++|++|++++|.+... +..+.++++|++|++++|.+. .++..+..+ ++|++|+++
T Consensus 88 ~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~ 167 (386)
T 2ca6_A 88 QALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICG 167 (386)
T ss_dssp HHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECC
T ss_pred HHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECC
Confidence 5778888888888876652 256777888888888888776 233334444 778888888
Q ss_pred CCccc-cccCh--hhhhccccccEEeccccccccccccccccccCcccchh-hhcccCCCcEEEeeccCC
Q 003090 376 GCYIL-ELIPR--GVLSRLRKLEELYMSHSFRHWQFESESEEDSSSNAKFI-ELGALSRLTSLHIHIPEG 441 (848)
Q Consensus 376 ~~~~~-~~~p~--~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~-~L~~l~~L~~L~l~~~~~ 441 (848)
+|... ..+|. ..+..+++|++|++++|.+... ...+... .+..+++|+.|++++|.+
T Consensus 168 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~---------g~~~l~~~~l~~~~~L~~L~Ls~n~l 228 (386)
T 2ca6_A 168 RNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPE---------GIEHLLLEGLAYCQELKVLDLQDNTF 228 (386)
T ss_dssp SSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHH---------HHHHHHHTTGGGCTTCCEEECCSSCC
T ss_pred CCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHh---------HHHHHHHHHhhcCCCccEEECcCCCC
Confidence 77654 33441 1256777888888887766521 0001222 567777788888777765
No 96
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.54 E-value=5.5e-15 Score=157.73 Aligned_cols=194 Identities=21% Similarity=0.209 Sum_probs=142.7
Q ss_pred cCCCceeeecCCCcccCCcc-cccccceeecccCcCccc-ChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCC
Q 003090 233 LDLTGISLMFNDIHEVPDEL-ECPKLQALFLQENSPLAI-PDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPL 310 (848)
Q Consensus 233 ~~l~~l~l~~n~l~~lp~~~-~~~~L~~L~l~~~~~~~~-~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~ 310 (848)
..++.+++++|.+...+... .+++|++|++++|.+... ....+..+++|++|++++ +.+...
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~--------------~~l~~~-- 133 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG--------------LRLSDP-- 133 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTT--------------CBCCHH--
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcC--------------cccCHH--
Confidence 46788889998888666555 889999999999876542 333468899999999998 666654
Q ss_pred CCCCchhhhcccCcEEEccCcc-ccC--CchhhccccCCCEEEccCC-CCcc--cChhhccCC-cccEEeccCCc--cc-
Q 003090 311 FLLPSSLSFLINLRTLRLHDRR-IQG--DLSLIGELSGLEILDLSES-DVSE--IPVSFGRLS-HLRLLDLTGCY--IL- 380 (848)
Q Consensus 311 ~~lp~~~~~l~~L~~L~L~~~~-~~~--~~~~i~~l~~L~~L~l~~~-~l~~--lp~~i~~L~-~L~~L~l~~~~--~~- 380 (848)
.|..++.+++|++|++++|. +.. .+..+.++++|++|++++| .++. +|..+..++ +|++|++++|. ..
T Consensus 134 --~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~ 211 (336)
T 2ast_B 134 --IVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQK 211 (336)
T ss_dssp --HHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCH
T ss_pred --HHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCH
Confidence 67778889999999999984 443 2355788999999999999 8883 677788899 99999999884 33
Q ss_pred cccChhhhhccccccEEeccccc-cccccccccccccCcccchhhhcccCCCcEEEeeccCCCCCCC---CC-ccCCCCe
Q 003090 381 ELIPRGVLSRLRKLEELYMSHSF-RHWQFESESEEDSSSNAKFIELGALSRLTSLHIHIPEGKIMPS---DM-SFQNLTS 455 (848)
Q Consensus 381 ~~~p~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~---~~-~~~~L~~ 455 (848)
..+|.. +.++++|++|++++|. ++.. .+..+..+++|+.|++++|. ...+. .+ .+++|+.
T Consensus 212 ~~l~~~-~~~~~~L~~L~l~~~~~l~~~-------------~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~l~~~~~L~~ 276 (336)
T 2ast_B 212 SDLSTL-VRRCPNLVHLDLSDSVMLKND-------------CFQEFFQLNYLQHLSLSRCY-DIIPETLLELGEIPTLKT 276 (336)
T ss_dssp HHHHHH-HHHCTTCSEEECTTCTTCCGG-------------GGGGGGGCTTCCEEECTTCT-TCCGGGGGGGGGCTTCCE
T ss_pred HHHHHH-HhhCCCCCEEeCCCCCcCCHH-------------HHHHHhCCCCCCEeeCCCCC-CCCHHHHHHHhcCCCCCE
Confidence 345554 6889999999999887 4433 45677888999999998885 11111 12 4555555
Q ss_pred EEEE
Q 003090 456 FSIA 459 (848)
Q Consensus 456 L~l~ 459 (848)
|++.
T Consensus 277 L~l~ 280 (336)
T 2ast_B 277 LQVF 280 (336)
T ss_dssp EECT
T ss_pred Eecc
Confidence 5554
No 97
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.54 E-value=4.5e-14 Score=141.00 Aligned_cols=151 Identities=25% Similarity=0.338 Sum_probs=123.4
Q ss_pred CCceeeecCCCcccCCcccccccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCCCC
Q 003090 235 LTGISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLP 314 (848)
Q Consensus 235 l~~l~l~~n~l~~lp~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp 314 (848)
.++++.+++.+..+|..+. ++|++|++++|.+..++...|.++++|++|++++ +.+.. +|
T Consensus 21 ~~~v~c~~~~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~--------------N~l~~-----i~ 80 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP-TNAQILYLHDNQITKLEPGVFDSLINLKELYLGS--------------NQLGA-----LP 80 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS--------------SCCCC-----CC
T ss_pred CCEeEccCCCcCccCCCCC-CCCCEEEcCCCccCccCHHHhhCccCCcEEECCC--------------CCCCC-----cC
Confidence 3568888888998887665 7899999999988888776778899999999999 77876 55
Q ss_pred -chhhhcccCcEEEccCccccCCc-hhhccccCCCEEEccCCCCcccChhhccCCcccEEeccCCccccccChhhhhccc
Q 003090 315 -SSLSFLINLRTLRLHDRRIQGDL-SLIGELSGLEILDLSESDVSEIPVSFGRLSHLRLLDLTGCYILELIPRGVLSRLR 392 (848)
Q Consensus 315 -~~~~~l~~L~~L~L~~~~~~~~~-~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~l~~l~ 392 (848)
..+..+++|++|++++|.+...+ ..+..+++|++|++++|.++.+|..+..+++|++|++++|.+. .+|...+..++
T Consensus 81 ~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~ 159 (229)
T 3e6j_A 81 VGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLK-SIPHGAFDRLS 159 (229)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCC-CCCTTTTTTCT
T ss_pred hhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCC-ccCHHHHhCCC
Confidence 44688899999999999887776 4568899999999999999989888888999999999987654 56655578888
Q ss_pred cccEEecccccccc
Q 003090 393 KLEELYMSHSFRHW 406 (848)
Q Consensus 393 ~L~~L~l~~~~~~~ 406 (848)
+|+.|++.+|.+..
T Consensus 160 ~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 160 SLTHAYLFGNPWDC 173 (229)
T ss_dssp TCCEEECTTSCBCT
T ss_pred CCCEEEeeCCCccC
Confidence 88888888887653
No 98
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.54 E-value=2.9e-14 Score=162.53 Aligned_cols=168 Identities=28% Similarity=0.335 Sum_probs=96.3
Q ss_pred CCceeeecCCCcccCCcccccccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCCCC
Q 003090 235 LTGISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLP 314 (848)
Q Consensus 235 l~~l~l~~n~l~~lp~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp 314 (848)
++.|++++|.+..+|....+++|+.|+|++|.+..+++ +..+++|+.|+|++ +.+.. +|
T Consensus 45 L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~--------------N~l~~-----l~ 103 (605)
T 1m9s_A 45 IDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDE--------------NKIKD-----LS 103 (605)
T ss_dssp CCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCS--------------SCCCC-----CT
T ss_pred CCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcC--------------CCCCC-----Ch
Confidence 45566666666665543356666666666666555554 45666666666666 55554 43
Q ss_pred chhhhcccCcEEEccCccccCCchhhccccCCCEEEccCCCCcccChhhccCCcccEEeccCCccccccChhhhhccccc
Q 003090 315 SSLSFLINLRTLRLHDRRIQGDLSLIGELSGLEILDLSESDVSEIPVSFGRLSHLRLLDLTGCYILELIPRGVLSRLRKL 394 (848)
Q Consensus 315 ~~~~~l~~L~~L~L~~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~l~~l~~L 394 (848)
.+..+++|++|+|++|.+.. ++.+..+++|+.|+|++|.++.+ ..+..+++|++|++++|.+.. +++ +..+++|
T Consensus 104 -~l~~l~~L~~L~Ls~N~l~~-l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~-~~~--l~~l~~L 177 (605)
T 1m9s_A 104 -SLKDLKKLKSLSLEHNGISD-INGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISD-IVP--LAGLTKL 177 (605)
T ss_dssp -TSTTCTTCCEEECTTSCCCC-CGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCC-CGG--GTTCTTC
T ss_pred -hhccCCCCCEEEecCCCCCC-CccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCC-chh--hccCCCC
Confidence 45566666666666664443 34456666666666666666655 355666666666666654433 332 4566666
Q ss_pred cEEeccccccccccccccccccCcccchhhhcccCCCcEEEeeccCCCCC
Q 003090 395 EELYMSHSFRHWQFESESEEDSSSNAKFIELGALSRLTSLHIHIPEGKIM 444 (848)
Q Consensus 395 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~ 444 (848)
+.|++++|.+.. +..+..+++|+.|++++|.+...
T Consensus 178 ~~L~Ls~N~i~~---------------l~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 178 QNLYLSKNHISD---------------LRALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CEEECCSSCCCB---------------CGGGTTCTTCSEEECCSEEEECC
T ss_pred CEEECcCCCCCC---------------ChHHccCCCCCEEEccCCcCcCC
Confidence 666666665542 13455566666666666655443
No 99
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.54 E-value=4.9e-14 Score=160.60 Aligned_cols=184 Identities=22% Similarity=0.261 Sum_probs=155.3
Q ss_pred eeeecCCCcccCCcccccccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCCCCchh
Q 003090 238 ISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLPSSL 317 (848)
Q Consensus 238 l~l~~n~l~~lp~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp~~~ 317 (848)
+.+..+.+..+.....+++|+.|++++|.+..++. +..+++|+.|+|++ +.+.. +|. +
T Consensus 26 l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~Ls~--------------N~l~~-----~~~-l 83 (605)
T 1m9s_A 26 DNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNG--------------NKLTD-----IKP-L 83 (605)
T ss_dssp HHTTCSCTTSEECHHHHTTCCCCBCTTCCCCCCTT--GGGCTTCCEEECTT--------------SCCCC-----CGG-G
T ss_pred HhccCCCcccccchhcCCCCCEEECcCCCCCCChH--HccCCCCCEEEeeC--------------CCCCC-----Chh-h
Confidence 34455666666655588999999999999988875 68999999999999 88888 665 9
Q ss_pred hhcccCcEEEccCccccCCchhhccccCCCEEEccCCCCcccChhhccCCcccEEeccCCccccccChhhhhccccccEE
Q 003090 318 SFLINLRTLRLHDRRIQGDLSLIGELSGLEILDLSESDVSEIPVSFGRLSHLRLLDLTGCYILELIPRGVLSRLRKLEEL 397 (848)
Q Consensus 318 ~~l~~L~~L~L~~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L 397 (848)
..+++|++|+|++|.+.. ++.+..+++|++|++++|.+..+| .+..+++|+.|++++|.... ++ . +..+++|+.|
T Consensus 84 ~~l~~L~~L~Ls~N~l~~-l~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~-l~-~-l~~l~~L~~L 158 (605)
T 1m9s_A 84 TNLKNLGWLFLDENKIKD-LSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITD-IT-V-LSRLTKLDTL 158 (605)
T ss_dssp GGCTTCCEEECCSSCCCC-CTTSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSCCCC-CG-G-GGSCTTCSEE
T ss_pred ccCCCCCEEECcCCCCCC-ChhhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCccCC-ch-h-hcccCCCCEE
Confidence 999999999999997655 558999999999999999999875 68999999999999987654 53 3 8999999999
Q ss_pred eccccccccccccccccccCcccchhhhcccCCCcEEEeeccCCCCCCCCCccCCCCeEEEEeCCC
Q 003090 398 YMSHSFRHWQFESESEEDSSSNAKFIELGALSRLTSLHIHIPEGKIMPSDMSFQNLTSFSIAIGDL 463 (848)
Q Consensus 398 ~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~ 463 (848)
++++|.+... +. +..+++|+.|+|++|.+..++....+++|+.|++..+..
T Consensus 159 ~Ls~N~l~~~--------------~~-l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 159 SLEDNQISDI--------------VP-LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp ECCSSCCCCC--------------GG-GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCSEEE
T ss_pred ECcCCcCCCc--------------hh-hccCCCCCEEECcCCCCCCChHHccCCCCCEEEccCCcC
Confidence 9999988653 22 889999999999999999886433889999999986554
No 100
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.54 E-value=2.8e-14 Score=140.44 Aligned_cols=172 Identities=24% Similarity=0.362 Sum_probs=139.1
Q ss_pred CceeeecCCCcccCCcccccccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCCCCc
Q 003090 236 TGISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLPS 315 (848)
Q Consensus 236 ~~l~l~~n~l~~lp~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp~ 315 (848)
++++.+++.+..+|..+ .+++++|++++|.+..++...|..+++|++|++++ +.+.. +|.
T Consensus 10 ~~v~c~~~~l~~~p~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~--------------n~l~~-----~~~ 69 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI-PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGG--------------NKLQS-----LPN 69 (208)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCS--------------SCCCC-----CCT
T ss_pred CEEEecCCCccCCCCCC-CCCCcEEEcCCCccCcCChhhhcccccCcEEECCC--------------CccCc-----cCh
Confidence 46777888888888766 36899999999999889888888999999999999 78877 544
Q ss_pred -hhhhcccCcEEEccCccccCCc-hhhccccCCCEEEccCCCCcccChh-hccCCcccEEeccCCccccccChhhhhccc
Q 003090 316 -SLSFLINLRTLRLHDRRIQGDL-SLIGELSGLEILDLSESDVSEIPVS-FGRLSHLRLLDLTGCYILELIPRGVLSRLR 392 (848)
Q Consensus 316 -~~~~l~~L~~L~L~~~~~~~~~-~~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~~l~~l~ 392 (848)
.+..+++|++|++++|.+...+ ..+..+++|++|++++|.++.+|.. +.++++|++|++++|... .+|...+..++
T Consensus 70 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~ 148 (208)
T 2o6s_A 70 GVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLT 148 (208)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCT
T ss_pred hhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccc-eeCHHHhccCC
Confidence 4688999999999999888776 4578999999999999999988765 688999999999998665 46665578899
Q ss_pred cccEEeccccccccccccccccccCcccchhhhcccCCCcEEEeeccCCC-CCCCCC
Q 003090 393 KLEELYMSHSFRHWQFESESEEDSSSNAKFIELGALSRLTSLHIHIPEGK-IMPSDM 448 (848)
Q Consensus 393 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~-~~~~~~ 448 (848)
+|+.|++++|.+.. .+++|+.|+++.|.+. .+|.++
T Consensus 149 ~L~~L~l~~N~~~~--------------------~~~~l~~L~~~~n~~~g~ip~~~ 185 (208)
T 2o6s_A 149 SLQYIWLHDNPWDC--------------------TCPGIRYLSEWINKHSGVVRNSA 185 (208)
T ss_dssp TCCEEECCSCCBCC--------------------CTTTTHHHHHHHHHCTTTBBCTT
T ss_pred CccEEEecCCCeec--------------------CCCCHHHHHHHHHhCCceeeccC
Confidence 99999999986542 3457788888777655 455443
No 101
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.53 E-value=3.2e-14 Score=138.56 Aligned_cols=151 Identities=18% Similarity=0.203 Sum_probs=106.6
Q ss_pred cccccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCCCCchhhhcccCcEEEccCcc
Q 003090 253 ECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLPSSLSFLINLRTLRLHDRR 332 (848)
Q Consensus 253 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp~~~~~l~~L~~L~L~~~~ 332 (848)
.+++|++|++++|.+..+|. +..+++|++|++++ +.+.. + ..+..+++|++|++++|.
T Consensus 42 ~l~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~l~~--------------n~~~~-----~-~~l~~l~~L~~L~l~~n~ 99 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLTG--IEYAHNIKDLTINN--------------IHATN-----Y-NPISGLSNLERLRIMGKD 99 (197)
T ss_dssp HHHTCCEEEEESSCCSCCTT--GGGCTTCSEEEEES--------------CCCSC-----C-GGGTTCTTCCEEEEECTT
T ss_pred hcCCccEEeccCCCccChHH--HhcCCCCCEEEccC--------------CCCCc-----c-hhhhcCCCCCEEEeECCc
Confidence 56677777777777777762 56777888888877 55543 3 357777788888888876
Q ss_pred ccC-CchhhccccCCCEEEccCCCCc-ccChhhccCCcccEEeccCCccccccChhhhhccccccEEecccccccccccc
Q 003090 333 IQG-DLSLIGELSGLEILDLSESDVS-EIPVSFGRLSHLRLLDLTGCYILELIPRGVLSRLRKLEELYMSHSFRHWQFES 410 (848)
Q Consensus 333 ~~~-~~~~i~~l~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~ 410 (848)
+.. .+..++.+++|++|++++|.++ ..|..++.+++|++|++++|...+.+|. +..+++|++|++++|.+...
T Consensus 100 l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~~~--- 174 (197)
T 4ezg_A 100 VTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHDY--- 174 (197)
T ss_dssp CBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCCCC---
T ss_pred cCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCcCh---
Confidence 665 3466777888888888888777 3566777788888888888765566663 67788888888887776532
Q ss_pred ccccccCcccchhhhcccCCCcEEEeeccCCC
Q 003090 411 ESEEDSSSNAKFIELGALSRLTSLHIHIPEGK 442 (848)
Q Consensus 411 ~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~ 442 (848)
..+..+++|+.|++++|.+.
T Consensus 175 ------------~~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 175 ------------RGIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp ------------TTGGGCSSCCEEEECBC---
T ss_pred ------------HHhccCCCCCEEEeeCcccC
Confidence 25677778888888877654
No 102
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.53 E-value=4.1e-14 Score=140.21 Aligned_cols=150 Identities=23% Similarity=0.324 Sum_probs=119.4
Q ss_pred CceeeecCCCcccCCcccccccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCCCCc
Q 003090 236 TGISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLPS 315 (848)
Q Consensus 236 ~~l~l~~n~l~~lp~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp~ 315 (848)
+.++++++.++.+|..+. ++++.|++++|.+..++...|..+++|++|++++ +.+... .|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~-~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~--------------N~i~~~----~~~ 74 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP-ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSN--------------NQISEL----APD 74 (220)
T ss_dssp TEEECTTSCCSSCCSSCC-TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCS--------------SCCCEE----CTT
T ss_pred CEEEcCCCCcCcCCCccC-cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCC--------------CcCCCc----CHH
Confidence 457788888888887665 6889999999988888877778888999999998 777774 477
Q ss_pred hhhhcccCcEEEccCccccCCc-hhhccccCCCEEEccCCCCccc-ChhhccCCcccEEeccCCccccccChhhhhcccc
Q 003090 316 SLSFLINLRTLRLHDRRIQGDL-SLIGELSGLEILDLSESDVSEI-PVSFGRLSHLRLLDLTGCYILELIPRGVLSRLRK 393 (848)
Q Consensus 316 ~~~~l~~L~~L~L~~~~~~~~~-~~i~~l~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~~p~~~l~~l~~ 393 (848)
.+..+++|++|+|++|.+...+ ..+..+++|++|++++|.++.+ |..+..+++|++|++++|.+.. ++.+.+..+++
T Consensus 75 ~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~ 153 (220)
T 2v9t_B 75 AFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQT-IAKGTFSPLRA 153 (220)
T ss_dssp TTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTT
T ss_pred HhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCE-ECHHHHhCCCC
Confidence 8888888999999988887776 4467888888888888888866 4567888888888888876544 55444778888
Q ss_pred ccEEeccccccc
Q 003090 394 LEELYMSHSFRH 405 (848)
Q Consensus 394 L~~L~l~~~~~~ 405 (848)
|+.|++++|.+.
T Consensus 154 L~~L~L~~N~~~ 165 (220)
T 2v9t_B 154 IQTMHLAQNPFI 165 (220)
T ss_dssp CCEEECCSSCEE
T ss_pred CCEEEeCCCCcC
Confidence 888888887654
No 103
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.53 E-value=1e-14 Score=157.02 Aligned_cols=177 Identities=16% Similarity=0.132 Sum_probs=103.2
Q ss_pred eeeecCCCcccC-Ccccc-cccceeecccCcCcccCh----HHHccCC-ceeEEEccCcccccccccCCCCCCCCCCCCC
Q 003090 238 ISLMFNDIHEVP-DELEC-PKLQALFLQENSPLAIPD----RFFQGMK-DLQVLDLGGIRRFSFSVRFPFLFPPLPSSPL 310 (848)
Q Consensus 238 l~l~~n~l~~lp-~~~~~-~~L~~L~l~~~~~~~~~~----~~~~~~~-~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~ 310 (848)
+.++.|.+.... ..... ++|++|++++|.++..+. ..+.+++ +|++|++++ +.+...
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~--------------N~l~~~-- 66 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSG--------------NSLGFK-- 66 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCS--------------SCGGGS--
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcC--------------CCCCHH--
Confidence 345666666333 33333 347777777777776665 4556676 777777777 666553
Q ss_pred CCCCchhhhc-----ccCcEEEccCccccCCc-hh----hccc-cCCCEEEccCCCCcccCh-h----hcc-CCcccEEe
Q 003090 311 FLLPSSLSFL-----INLRTLRLHDRRIQGDL-SL----IGEL-SGLEILDLSESDVSEIPV-S----FGR-LSHLRLLD 373 (848)
Q Consensus 311 ~~lp~~~~~l-----~~L~~L~L~~~~~~~~~-~~----i~~l-~~L~~L~l~~~~l~~lp~-~----i~~-L~~L~~L~ 373 (848)
.+..+..+ ++|++|++++|.+.... .. +..+ ++|++|++++|.++..+. . +.. ..+|++|+
T Consensus 67 --~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~ 144 (362)
T 3goz_A 67 --NSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLN 144 (362)
T ss_dssp --CHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEE
T ss_pred --HHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEE
Confidence 34555554 77777777777666544 32 3333 677777777777765443 2 233 24777777
Q ss_pred ccCCcccc----ccChhhhhccc-cccEEeccccccccccccccccccCcccchhhhccc-CCCcEEEeeccCCC
Q 003090 374 LTGCYILE----LIPRGVLSRLR-KLEELYMSHSFRHWQFESESEEDSSSNAKFIELGAL-SRLTSLHIHIPEGK 442 (848)
Q Consensus 374 l~~~~~~~----~~p~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~l-~~L~~L~l~~~~~~ 442 (848)
+++|.... .++.. +..++ +|++|++++|.+....+ .+....+... ++|+.|++++|.+.
T Consensus 145 Ls~N~l~~~~~~~l~~~-l~~~~~~L~~L~Ls~n~l~~~~~---------~~l~~~l~~~~~~L~~L~Ls~N~i~ 209 (362)
T 3goz_A 145 LRGNDLGIKSSDELIQI-LAAIPANVNSLNLRGNNLASKNC---------AELAKFLASIPASVTSLDLSANLLG 209 (362)
T ss_dssp CTTSCGGGSCHHHHHHH-HHTSCTTCCEEECTTSCGGGSCH---------HHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred ccCCcCCHHHHHHHHHH-HhcCCccccEeeecCCCCchhhH---------HHHHHHHHhCCCCCCEEECCCCCCC
Confidence 77765543 22232 34444 77777777776654310 1122234444 47777777776544
No 104
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.52 E-value=5.5e-14 Score=139.32 Aligned_cols=151 Identities=17% Similarity=0.245 Sum_probs=113.3
Q ss_pred CceeeecCCCcccCCcccccccceeecccCcCccc-ChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCCCC
Q 003090 236 TGISLMFNDIHEVPDELECPKLQALFLQENSPLAI-PDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLP 314 (848)
Q Consensus 236 ~~l~l~~n~l~~lp~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp 314 (848)
+.+++++|.++.+|..+ .+.+++|++++|.+..+ +..+|..+++|++|++++ +.+... .+
T Consensus 14 ~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~--------------N~i~~i----~~ 74 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI-PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSN--------------NKITDI----EE 74 (220)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCS--------------SCCCEE----CT
T ss_pred CEeEeCCCCcccCccCC-CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCC--------------CcCCEE----CH
Confidence 46788888888888765 24567888888887777 345567888888888888 777763 33
Q ss_pred chhhhcccCcEEEccCccccCCc-hhhccccCCCEEEccCCCCccc-ChhhccCCcccEEeccCCccccccChhhhhccc
Q 003090 315 SSLSFLINLRTLRLHDRRIQGDL-SLIGELSGLEILDLSESDVSEI-PVSFGRLSHLRLLDLTGCYILELIPRGVLSRLR 392 (848)
Q Consensus 315 ~~~~~l~~L~~L~L~~~~~~~~~-~~i~~l~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~~p~~~l~~l~ 392 (848)
..+..+++|++|++++|.+...+ ..+..+++|++|++++|.++.+ |..+..+++|++|++++|.+.+..|.. +..++
T Consensus 75 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~ 153 (220)
T 2v70_A 75 GAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGA-FDTLH 153 (220)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTT-TTTCT
T ss_pred HHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHH-hcCCC
Confidence 46888888888888888777766 4578888888888888888866 566778888888888887665544554 77888
Q ss_pred cccEEecccccccc
Q 003090 393 KLEELYMSHSFRHW 406 (848)
Q Consensus 393 ~L~~L~l~~~~~~~ 406 (848)
+|+.|++++|.+..
T Consensus 154 ~L~~L~L~~N~l~c 167 (220)
T 2v70_A 154 SLSTLNLLANPFNC 167 (220)
T ss_dssp TCCEEECCSCCEEC
T ss_pred CCCEEEecCcCCcC
Confidence 88888888877653
No 105
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.50 E-value=1.1e-13 Score=155.70 Aligned_cols=177 Identities=18% Similarity=0.257 Sum_probs=147.9
Q ss_pred CCCceeeecCCCcccCCcccccccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCCC
Q 003090 234 DLTGISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLL 313 (848)
Q Consensus 234 ~l~~l~l~~n~l~~lp~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~l 313 (848)
.++.|++++|.+..+|..+. ++|++|++++|.+..+| ..+++|++|++++ |.+.. +
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~-~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~--------------N~l~~-----i 115 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP-PQITVLEITQNALISLP----ELPASLEYLDACD--------------NRLST-----L 115 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC-TTCSEEECCSSCCSCCC----CCCTTCCEEECCS--------------SCCSC-----C
T ss_pred CccEEEeCCCCCCccCHhHc-CCCCEEECcCCCCcccc----cccCCCCEEEccC--------------CCCCC-----c
Confidence 68899999999999998774 88999999999999998 3578999999999 88888 7
Q ss_pred CchhhhcccCcEEEccCccccCCchhhccccCCCEEEccCCCCcccChhhccCCcccEEeccCCccccccChhhhhcccc
Q 003090 314 PSSLSFLINLRTLRLHDRRIQGDLSLIGELSGLEILDLSESDVSEIPVSFGRLSHLRLLDLTGCYILELIPRGVLSRLRK 393 (848)
Q Consensus 314 p~~~~~l~~L~~L~L~~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~l~~l~~ 393 (848)
|. +.. +|++|++++|.+...+. .+++|++|++++|.++.+|. .+++|++|++++|.+.. +|. +. ++
T Consensus 116 p~-l~~--~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~-lp~--l~--~~ 181 (571)
T 3cvr_A 116 PE-LPA--SLKHLDVDNNQLTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTF-LPE--LP--ES 181 (571)
T ss_dssp CC-CCT--TCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC-CCC--CC--TT
T ss_pred ch-hhc--CCCEEECCCCcCCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCC-cch--hh--CC
Confidence 77 655 99999999998887555 78999999999999999997 68899999999987654 887 45 89
Q ss_pred ccEEeccccccccccccccccccCcccchhhhcc-----cCCCcEEEeeccCCCCCCCCC-ccCCCCeEEEEeCCC
Q 003090 394 LEELYMSHSFRHWQFESESEEDSSSNAKFIELGA-----LSRLTSLHIHIPEGKIMPSDM-SFQNLTSFSIAIGDL 463 (848)
Q Consensus 394 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~-----l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~ 463 (848)
|+.|++++|.+... +. +.. ...|+.|++++|.++.+|..+ .+++|+.|++..+..
T Consensus 182 L~~L~Ls~N~L~~l--------------p~-~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 182 LEALDVSTNLLESL--------------PA-VPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp CCEEECCSSCCSSC--------------CC-CC--------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSC
T ss_pred CCEEECcCCCCCch--------------hh-HHHhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcC
Confidence 99999999988732 22 332 223399999999999999887 899999999875543
No 106
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.50 E-value=1.2e-13 Score=134.53 Aligned_cols=149 Identities=20% Similarity=0.237 Sum_probs=127.8
Q ss_pred cCCCceeeecCCCcccCCcccccccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCC
Q 003090 233 LDLTGISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFL 312 (848)
Q Consensus 233 ~~l~~l~l~~n~l~~lp~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 312 (848)
..++.+++++|.+..+|....+++|++|++++|.+..++. +..+++|++|++++ +.+...
T Consensus 44 ~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~--l~~l~~L~~L~l~~--------------n~l~~~---- 103 (197)
T 4ezg_A 44 NSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMG--------------KDVTSD---- 103 (197)
T ss_dssp HTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGG--GTTCTTCCEEEEEC--------------TTCBGG----
T ss_pred CCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcchh--hhcCCCCCEEEeEC--------------CccCcc----
Confidence 4578899999999999954489999999999997766653 68999999999999 777764
Q ss_pred CCchhhhcccCcEEEccCccccCC-chhhccccCCCEEEccCCC-CcccChhhccCCcccEEeccCCccccccChhhhhc
Q 003090 313 LPSSLSFLINLRTLRLHDRRIQGD-LSLIGELSGLEILDLSESD-VSEIPVSFGRLSHLRLLDLTGCYILELIPRGVLSR 390 (848)
Q Consensus 313 lp~~~~~l~~L~~L~L~~~~~~~~-~~~i~~l~~L~~L~l~~~~-l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~l~~ 390 (848)
.|..++.+++|++|++++|.+... +..++.+++|++|++++|. +..+| .+..+++|++|++++|... .++ . +..
T Consensus 104 ~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~-~~~-~-l~~ 179 (197)
T 4ezg_A 104 KIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVH-DYR-G-IED 179 (197)
T ss_dssp GSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCC-CCT-T-GGG
T ss_pred cChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCc-ChH-H-hcc
Confidence 678899999999999999988764 4889999999999999998 88887 7999999999999998764 466 3 899
Q ss_pred cccccEEeccccccc
Q 003090 391 LRKLEELYMSHSFRH 405 (848)
Q Consensus 391 l~~L~~L~l~~~~~~ 405 (848)
+++|++|++++|.+.
T Consensus 180 l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 180 FPKLNQLYAFSQTIG 194 (197)
T ss_dssp CSSCCEEEECBC---
T ss_pred CCCCCEEEeeCcccC
Confidence 999999999999864
No 107
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.49 E-value=8.8e-14 Score=141.96 Aligned_cols=167 Identities=19% Similarity=0.174 Sum_probs=121.4
Q ss_pred CceeeecCCCcccCCcccccccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCCCCc
Q 003090 236 TGISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLPS 315 (848)
Q Consensus 236 ~~l~l~~n~l~~lp~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp~ 315 (848)
..++++.+.+.+++....+++|++|++++|.+..++. +..+++|++|++++ +.+.+ +|.
T Consensus 22 ~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~L~~--------------N~i~~-----~~~ 80 (263)
T 1xeu_A 22 VKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHLSH--------------NQISD-----LSP 80 (263)
T ss_dssp HHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCTT--GGGCTTCCEEECCS--------------SCCCC-----CGG
T ss_pred HHHHhcCCCcccccchhhcCcCcEEECcCCCcccchH--HhhCCCCCEEECCC--------------CccCC-----Chh
Confidence 3456677777777744477888888888887777773 56788888888888 77777 555
Q ss_pred hhhhcccCcEEEccCccccCCchhhccccCCCEEEccCCCCcccChhhccCCcccEEeccCCccccccChhhhhcccccc
Q 003090 316 SLSFLINLRTLRLHDRRIQGDLSLIGELSGLEILDLSESDVSEIPVSFGRLSHLRLLDLTGCYILELIPRGVLSRLRKLE 395 (848)
Q Consensus 316 ~~~~l~~L~~L~L~~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~l~~l~~L~ 395 (848)
+..+++|++|++++|.+...+. +.. .+|++|++++|.++.+| .+..+++|++|++++|... .++. ++.+++|+
T Consensus 81 -l~~l~~L~~L~L~~N~l~~l~~-~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~-~~~~--l~~l~~L~ 153 (263)
T 1xeu_A 81 -LKDLTKLEELSVNRNRLKNLNG-IPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLK-SIVM--LGFLSKLE 153 (263)
T ss_dssp -GTTCSSCCEEECCSSCCSCCTT-CCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCC-BCGG--GGGCTTCC
T ss_pred -hccCCCCCEEECCCCccCCcCc-ccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCC-CChH--HccCCCCC
Confidence 7788888888888886665443 333 78888888888888775 5778888888888887653 3553 67888888
Q ss_pred EEeccccccccccccccccccCcccchhhhcccCCCcEEEeeccCCCCCC
Q 003090 396 ELYMSHSFRHWQFESESEEDSSSNAKFIELGALSRLTSLHIHIPEGKIMP 445 (848)
Q Consensus 396 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~ 445 (848)
+|++++|.+... ..+..+++|+.|++++|.+...+
T Consensus 154 ~L~L~~N~i~~~---------------~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 154 VLDLHGNEITNT---------------GGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp EEECTTSCCCBC---------------TTSTTCCCCCEEEEEEEEEECCC
T ss_pred EEECCCCcCcch---------------HHhccCCCCCEEeCCCCcccCCc
Confidence 888888876532 45677788888888887765444
No 108
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.49 E-value=7.3e-14 Score=142.59 Aligned_cols=170 Identities=18% Similarity=0.171 Sum_probs=144.3
Q ss_pred cccccccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCCCCchhhhcccCcEEEccC
Q 003090 251 ELECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLPSSLSFLINLRTLRLHD 330 (848)
Q Consensus 251 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp~~~~~l~~L~~L~L~~ 330 (848)
...+.++..++++.+.+..++. +..+++|++|++++ +.+.. +| .+..+++|++|++++
T Consensus 15 d~~l~~l~~l~l~~~~i~~~~~--~~~l~~L~~L~l~~--------------n~i~~-----l~-~l~~l~~L~~L~L~~ 72 (263)
T 1xeu_A 15 DPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDN--------------SNIQS-----LA-GMQFFTNLKELHLSH 72 (263)
T ss_dssp SHHHHHHHHHHHTCSCTTSEEC--HHHHTTCSEEECTT--------------SCCCC-----CT-TGGGCTTCCEEECCS
T ss_pred CHHHHHHHHHHhcCCCcccccc--hhhcCcCcEEECcC--------------CCccc-----ch-HHhhCCCCCEEECCC
Confidence 3367788889999998888873 57899999999999 88887 77 689999999999999
Q ss_pred ccccCCchhhccccCCCEEEccCCCCcccChhhccCCcccEEeccCCccccccChhhhhccccccEEecccccccccccc
Q 003090 331 RRIQGDLSLIGELSGLEILDLSESDVSEIPVSFGRLSHLRLLDLTGCYILELIPRGVLSRLRKLEELYMSHSFRHWQFES 410 (848)
Q Consensus 331 ~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~ 410 (848)
|.+...++ +.++++|++|++++|.++.+|.... ++|++|++++|... .++. +.++++|+.|++++|.+...
T Consensus 73 N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L~~N~l~-~~~~--l~~l~~L~~L~Ls~N~i~~~--- 143 (263)
T 1xeu_A 73 NQISDLSP-LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLFLDNNELR-DTDS--LIHLKNLEILSIRNNKLKSI--- 143 (263)
T ss_dssp SCCCCCGG-GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEECCSSCCS-BSGG--GTTCTTCCEEECTTSCCCBC---
T ss_pred CccCCChh-hccCCCCCEEECCCCccCCcCcccc--CcccEEEccCCccC-CChh--hcCcccccEEECCCCcCCCC---
Confidence 98877666 9999999999999999999886444 99999999998664 4554 89999999999999988642
Q ss_pred ccccccCcccchhhhcccCCCcEEEeeccCCCCCCCCCccCCCCeEEEEeCCC
Q 003090 411 ESEEDSSSNAKFIELGALSRLTSLHIHIPEGKIMPSDMSFQNLTSFSIAIGDL 463 (848)
Q Consensus 411 ~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~ 463 (848)
..+..+++|+.|++++|.+..++....+++|+.|++..+..
T Consensus 144 ------------~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 144 ------------VMLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp ------------GGGGGCTTCCEEECTTSCCCBCTTSTTCCCCCEEEEEEEEE
T ss_pred ------------hHHccCCCCCEEECCCCcCcchHHhccCCCCCEEeCCCCcc
Confidence 36889999999999999998883323889999999986553
No 109
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.49 E-value=1.5e-15 Score=172.12 Aligned_cols=189 Identities=21% Similarity=0.242 Sum_probs=141.8
Q ss_pred cCCCceeeecCCCcccCCcc-cccccceeecccCc-------------CcccChHHHccCCceeEEE-ccCccccccccc
Q 003090 233 LDLTGISLMFNDIHEVPDEL-ECPKLQALFLQENS-------------PLAIPDRFFQGMKDLQVLD-LGGIRRFSFSVR 297 (848)
Q Consensus 233 ~~l~~l~l~~n~l~~lp~~~-~~~~L~~L~l~~~~-------------~~~~~~~~~~~~~~Lr~L~-l~~~~~~~~~~~ 297 (848)
..++.|++++|.+..+|..+ .+++|+.|++++|. ....++..++.+++|+.|+ ++.
T Consensus 349 ~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~--------- 419 (567)
T 1dce_A 349 EQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRA--------- 419 (567)
T ss_dssp TTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGH---------
T ss_pred ccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhh---------
Confidence 34567888888888888877 78888888876653 2233334456777777777 444
Q ss_pred CCCCCCCCCCCCCCCCCc------hhhh--cccCcEEEccCccccCCchhhccccCCCEEEccCCCCcccChhhccCCcc
Q 003090 298 FPFLFPPLPSSPLFLLPS------SLSF--LINLRTLRLHDRRIQGDLSLIGELSGLEILDLSESDVSEIPVSFGRLSHL 369 (848)
Q Consensus 298 ~~~~~~~l~~~~~~~lp~------~~~~--l~~L~~L~L~~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L 369 (848)
+.+.. ++. .+.. ...|++|++++|.+...+. ++.+++|++|++++|.++.+|..++++++|
T Consensus 420 -----n~~~~-----L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L 488 (567)
T 1dce_A 420 -----AYLDD-----LRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCL 488 (567)
T ss_dssp -----HHHHH-----HHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTC
T ss_pred -----cccch-----hhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCC
Confidence 22211 111 1111 1258899999998877655 999999999999999999999999999999
Q ss_pred cEEeccCCccccccChhhhhccccccEEeccccccccccccccccccCcccc-hhhhcccCCCcEEEeeccCCCCCCCCC
Q 003090 370 RLLDLTGCYILELIPRGVLSRLRKLEELYMSHSFRHWQFESESEEDSSSNAK-FIELGALSRLTSLHIHIPEGKIMPSDM 448 (848)
Q Consensus 370 ~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~-~~~L~~l~~L~~L~l~~~~~~~~~~~~ 448 (848)
++|++++|.+.+ +| . ++++++|+.|++++|.+... . +..++.+++|+.|++++|.+...|...
T Consensus 489 ~~L~Ls~N~l~~-lp-~-l~~l~~L~~L~Ls~N~l~~~-------------~~p~~l~~l~~L~~L~L~~N~l~~~~~~~ 552 (567)
T 1dce_A 489 EVLQASDNALEN-VD-G-VANLPRLQELLLCNNRLQQS-------------AAIQPLVSCPRLVLLNLQGNSLCQEEGIQ 552 (567)
T ss_dssp CEEECCSSCCCC-CG-G-GTTCSSCCEEECCSSCCCSS-------------STTGGGGGCTTCCEEECTTSGGGGSSSCT
T ss_pred CEEECCCCCCCC-Cc-c-cCCCCCCcEEECCCCCCCCC-------------CCcHHHhcCCCCCEEEecCCcCCCCccHH
Confidence 999999987654 77 4 89999999999999988754 2 678899999999999999988777654
Q ss_pred -----ccCCCCeEE
Q 003090 449 -----SFQNLTSFS 457 (848)
Q Consensus 449 -----~~~~L~~L~ 457 (848)
.+++|+.|+
T Consensus 553 ~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 553 ERLAEMLPSVSSIL 566 (567)
T ss_dssp THHHHHCTTCSEEE
T ss_pred HHHHHHCcccCccC
Confidence 377888774
No 110
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.49 E-value=7.1e-14 Score=150.21 Aligned_cols=173 Identities=21% Similarity=0.209 Sum_probs=127.1
Q ss_pred CceeeecCCCcccCCcccccccceeecccCcCcccChHHHc-cCCceeEEEccCcccccccccCCCCCCCCCCCCCCCCC
Q 003090 236 TGISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQ-GMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLP 314 (848)
Q Consensus 236 ~~l~l~~n~l~~lp~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp 314 (848)
+.++++++.+..+|..+. +.++.|++++|.+..++...|. ++++|++|++++ |.+... .|
T Consensus 21 ~~l~c~~~~l~~iP~~~~-~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~--------------N~i~~i----~~ 81 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP-SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSH--------------NHLNFI----SS 81 (361)
T ss_dssp TEEECCSSCCSSCCSSCC-TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCS--------------SCCCEE----CT
T ss_pred CEEEeCCCCcCccCccCC-CCCCEEECCCCCCCccChhhhhhcccccCEEECCC--------------CcCCcc----Ch
Confidence 457888888888887663 4578888888888888877776 888888888888 777773 33
Q ss_pred chhhhcccCcEEEccCccccCCc-hhhccccCCCEEEccCCCCccc-ChhhccCCcccEEeccCCccccccChhhh---h
Q 003090 315 SSLSFLINLRTLRLHDRRIQGDL-SLIGELSGLEILDLSESDVSEI-PVSFGRLSHLRLLDLTGCYILELIPRGVL---S 389 (848)
Q Consensus 315 ~~~~~l~~L~~L~L~~~~~~~~~-~~i~~l~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~~p~~~l---~ 389 (848)
..+..+++|++|+|++|.+...+ ..+..+.+|++|++++|.+..+ |..+..+++|++|++++|.+ ..+|...+ .
T Consensus 82 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l-~~l~~~~~~~~~ 160 (361)
T 2xot_A 82 EAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI-SRFPVELIKDGN 160 (361)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC-CSCCGGGTC---
T ss_pred hhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcC-CeeCHHHhcCcc
Confidence 56888888888888888776655 4678888888888888888865 55678888888888888654 44776644 5
Q ss_pred ccccccEEeccccccccccccccccccCcccchhhhcccCC--CcEEEeeccCC
Q 003090 390 RLRKLEELYMSHSFRHWQFESESEEDSSSNAKFIELGALSR--LTSLHIHIPEG 441 (848)
Q Consensus 390 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~--L~~L~l~~~~~ 441 (848)
.+++|+.|++++|.+... ....+..++. |+.|++++|.+
T Consensus 161 ~l~~L~~L~L~~N~l~~l-------------~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 161 KLPKLMLLDLSSNKLKKL-------------PLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp -CTTCCEEECCSSCCCCC-------------CHHHHHHSCHHHHTTEECCSSCE
T ss_pred cCCcCCEEECCCCCCCcc-------------CHHHhhhccHhhcceEEecCCCc
Confidence 678888888888877643 3345555555 36677776643
No 111
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.48 E-value=5e-14 Score=151.63 Aligned_cols=198 Identities=15% Similarity=0.165 Sum_probs=146.3
Q ss_pred chhHHHHHHHhccC-CCceeeecCCCcccCC-----cc-ccc-ccceeecccCcCcccChHHHccC-----CceeEEEcc
Q 003090 221 SITKIQYEIAGWLD-LTGISLMFNDIHEVPD-----EL-ECP-KLQALFLQENSPLAIPDRFFQGM-----KDLQVLDLG 287 (848)
Q Consensus 221 ~~~~l~~~i~~~~~-l~~l~l~~n~l~~lp~-----~~-~~~-~L~~L~l~~~~~~~~~~~~~~~~-----~~Lr~L~l~ 287 (848)
++.....++..... ++.|++++|.+...+. .+ .++ +|++|++++|.++......+..+ ++|++|+++
T Consensus 9 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls 88 (362)
T 3goz_A 9 PGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLS 88 (362)
T ss_dssp TTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECC
T ss_pred cchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECc
Confidence 44545555555555 9999999999998774 33 677 89999999998887765545554 999999999
Q ss_pred CcccccccccCCCCCCCCCCCCCCCCCchhh----hc-ccCcEEEccCccccCCc-hhh----cc-ccCCCEEEccCCCC
Q 003090 288 GIRRFSFSVRFPFLFPPLPSSPLFLLPSSLS----FL-INLRTLRLHDRRIQGDL-SLI----GE-LSGLEILDLSESDV 356 (848)
Q Consensus 288 ~~~~~~~~~~~~~~~~~l~~~~~~~lp~~~~----~l-~~L~~L~L~~~~~~~~~-~~i----~~-l~~L~~L~l~~~~l 356 (848)
+ +.+... .+..+. .+ ++|++|++++|.+.... ..+ .. ..+|++|++++|.+
T Consensus 89 ~--------------n~l~~~----~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l 150 (362)
T 3goz_A 89 G--------------NFLSYK----SSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDL 150 (362)
T ss_dssp S--------------SCGGGS----CHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCG
T ss_pred C--------------CcCChH----HHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcC
Confidence 9 777763 444444 44 89999999999887665 333 34 36999999999998
Q ss_pred c-----ccChhhccCC-cccEEeccCCccccccChh---hhhcc-ccccEEeccccccccccccccccccCcccchhhhc
Q 003090 357 S-----EIPVSFGRLS-HLRLLDLTGCYILELIPRG---VLSRL-RKLEELYMSHSFRHWQFESESEEDSSSNAKFIELG 426 (848)
Q Consensus 357 ~-----~lp~~i~~L~-~L~~L~l~~~~~~~~~p~~---~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~ 426 (848)
. .++..+..++ +|++|++++|......+.. .+... ++|++|++++|.+... ...+.+..+.
T Consensus 151 ~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~---------~~~~l~~~l~ 221 (362)
T 3goz_A 151 GIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLK---------SYAELAYIFS 221 (362)
T ss_dssp GGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGS---------CHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChh---------HHHHHHHHHh
Confidence 8 5556667776 9999999998776544433 13444 6999999999988653 1122455666
Q ss_pred cc-CCCcEEEeeccCCCCCC
Q 003090 427 AL-SRLTSLHIHIPEGKIMP 445 (848)
Q Consensus 427 ~l-~~L~~L~l~~~~~~~~~ 445 (848)
.. ++|+.|++++|.+...+
T Consensus 222 ~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 222 SIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HSCTTCCEEECCSSCCCCCC
T ss_pred cCCCCceEEECcCCCCCcHH
Confidence 64 59999999999877544
No 112
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.47 E-value=1.2e-13 Score=135.92 Aligned_cols=149 Identities=23% Similarity=0.310 Sum_probs=129.7
Q ss_pred CCCceeeecCCCcccCCcc--cccccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCC
Q 003090 234 DLTGISLMFNDIHEVPDEL--ECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLF 311 (848)
Q Consensus 234 ~l~~l~l~~n~l~~lp~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~ 311 (848)
.++.|++++|.+..++... .+++|++|++++|.+..++...|..+++|++|++++ +.+..
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~--------------n~l~~---- 90 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST--------------NQLQS---- 90 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS--------------SCCCC----
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC--------------CcCCc----
Confidence 5789999999999988764 899999999999999999988889999999999999 88887
Q ss_pred CCC-chhhhcccCcEEEccCccccCCc-hhhccccCCCEEEccCCCCcccChh-hccCCcccEEeccCCccccccChhhh
Q 003090 312 LLP-SSLSFLINLRTLRLHDRRIQGDL-SLIGELSGLEILDLSESDVSEIPVS-FGRLSHLRLLDLTGCYILELIPRGVL 388 (848)
Q Consensus 312 ~lp-~~~~~l~~L~~L~L~~~~~~~~~-~~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~~l 388 (848)
+| ..+..+++|++|++++|.+...+ ..+.++++|++|++++|.++.+|.. +.++++|++|++++|...
T Consensus 91 -~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------- 161 (208)
T 2o6s_A 91 -LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------- 161 (208)
T ss_dssp -CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC--------
T ss_pred -cCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee--------
Confidence 55 44789999999999999888777 4579999999999999999988875 788999999999998543
Q ss_pred hccccccEEeccccccccccc
Q 003090 389 SRLRKLEELYMSHSFRHWQFE 409 (848)
Q Consensus 389 ~~l~~L~~L~l~~~~~~~~~~ 409 (848)
+.+++|+.|+++.|.+.+.+|
T Consensus 162 ~~~~~l~~L~~~~n~~~g~ip 182 (208)
T 2o6s_A 162 CTCPGIRYLSEWINKHSGVVR 182 (208)
T ss_dssp CCTTTTHHHHHHHHHCTTTBB
T ss_pred cCCCCHHHHHHHHHhCCceee
Confidence 456678889998888887643
No 113
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.45 E-value=4.5e-13 Score=133.69 Aligned_cols=150 Identities=23% Similarity=0.296 Sum_probs=116.8
Q ss_pred cceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCCCCchhhhcccCcEEEccCccccCC
Q 003090 257 LQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLPSSLSFLINLRTLRLHDRRIQGD 336 (848)
Q Consensus 257 L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~ 336 (848)
-..++.+++.+..+|..+ .++|++|++++ +.+... .|..+..+++|++|++++|.+...
T Consensus 21 ~~~v~c~~~~l~~ip~~~---~~~L~~L~Ls~--------------n~i~~~----~~~~~~~l~~L~~L~L~~N~l~~i 79 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGI---PTNAQILYLHD--------------NQITKL----EPGVFDSLINLKELYLGSNQLGAL 79 (229)
T ss_dssp TTEEECTTSCCSSCCSCC---CTTCSEEECCS--------------SCCCCC----CTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCEeEccCCCcCccCCCC---CCCCCEEEcCC--------------CccCcc----CHHHhhCccCCcEEECCCCCCCCc
Confidence 456777788888888753 37888999998 778774 577788888999999999887766
Q ss_pred c-hhhccccCCCEEEccCCCCcccChh-hccCCcccEEeccCCccccccChhhhhccccccEEecccccccccccccccc
Q 003090 337 L-SLIGELSGLEILDLSESDVSEIPVS-FGRLSHLRLLDLTGCYILELIPRGVLSRLRKLEELYMSHSFRHWQFESESEE 414 (848)
Q Consensus 337 ~-~~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 414 (848)
+ ..+..+++|++|++++|.++.+|.. +..+++|++|++++|.+. .+|.. +..+++|++|++++|.+...
T Consensus 80 ~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~-~~~l~~L~~L~L~~N~l~~~------- 150 (229)
T 3e6j_A 80 PVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRG-IERLTHLTHLALDQNQLKSI------- 150 (229)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTT-GGGCTTCSEEECCSSCCCCC-------
T ss_pred ChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcc-cccCCCCCEEECCCCcCCcc-------
Confidence 6 4568888899999998888877765 578888888888887654 68877 68888888888888877653
Q ss_pred ccCcccchhhhcccCCCcEEEeeccCCC
Q 003090 415 DSSSNAKFIELGALSRLTSLHIHIPEGK 442 (848)
Q Consensus 415 ~~~~~~~~~~L~~l~~L~~L~l~~~~~~ 442 (848)
....+..+++|+.|++++|.+.
T Consensus 151 ------~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 151 ------PHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp ------CTTTTTTCTTCCEEECTTSCBC
T ss_pred ------CHHHHhCCCCCCEEEeeCCCcc
Confidence 2245777888888888887654
No 114
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.44 E-value=3.8e-13 Score=115.70 Aligned_cols=63 Identities=13% Similarity=0.189 Sum_probs=56.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003090 37 HYIEALRTEAKKLTDRRNDLQAEIDAATRNR-EVIKDEVKSWIAEVNDIIPKAEKFLEDEVKVN 99 (848)
Q Consensus 37 ~~~~~~~~~l~~L~~~l~~i~~~l~~a~~~~-~~~~~~v~~wl~~lk~~~~d~eD~lde~~~~~ 99 (848)
....+++++++.|+++|++|+++|.+|+.+. +..++.++.|++++|++||||||+||+|.+..
T Consensus 19 ~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~~~ 82 (115)
T 3qfl_A 19 KLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLVQV 82 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456999999999999999999999999874 46899999999999999999999999996654
No 115
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.43 E-value=6.7e-13 Score=131.43 Aligned_cols=149 Identities=15% Similarity=0.131 Sum_probs=110.3
Q ss_pred ceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCCC-C-chhhhcccCcEEEccCccccC
Q 003090 258 QALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLL-P-SSLSFLINLRTLRLHDRRIQG 335 (848)
Q Consensus 258 ~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~l-p-~~~~~l~~L~~L~L~~~~~~~ 335 (848)
+++++++|.+..+|..+ ...+++|++++ +.+.. + | ..+..+++|++|++++|.+..
T Consensus 14 ~~l~~s~n~l~~iP~~~---~~~~~~L~L~~--------------N~l~~-----~~~~~~~~~l~~L~~L~L~~N~i~~ 71 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI---PQYTAELRLNN--------------NEFTV-----LEATGIFKKLPQLRKINFSNNKITD 71 (220)
T ss_dssp TEEECCSSCCSSCCSCC---CTTCSEEECCS--------------SCCCE-----ECCCCCGGGCTTCCEEECCSSCCCE
T ss_pred CEeEeCCCCcccCccCC---CCCCCEEEcCC--------------CcCCc-----cCchhhhccCCCCCEEECCCCcCCE
Confidence 57788888888888653 34567888888 77776 4 2 347788888888888887766
Q ss_pred Cc-hhhccccCCCEEEccCCCCcccChh-hccCCcccEEeccCCccccccChhhhhccccccEEeccccccccccccccc
Q 003090 336 DL-SLIGELSGLEILDLSESDVSEIPVS-FGRLSHLRLLDLTGCYILELIPRGVLSRLRKLEELYMSHSFRHWQFESESE 413 (848)
Q Consensus 336 ~~-~~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 413 (848)
.+ ..+..+++|++|++++|.++.+|.. +..+++|++|++++|.+....|.. +..+++|++|++++|.+...
T Consensus 72 i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~------ 144 (220)
T 2v70_A 72 IEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDS-FIGLSSVRLLSLYDNQITTV------ 144 (220)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTS-STTCTTCSEEECTTSCCCCB------
T ss_pred ECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhH-cCCCccCCEEECCCCcCCEE------
Confidence 65 4678888888888888888876654 777888888888887665544554 77888888888888877654
Q ss_pred cccCcccchhhhcccCCCcEEEeeccCCC
Q 003090 414 EDSSSNAKFIELGALSRLTSLHIHIPEGK 442 (848)
Q Consensus 414 ~~~~~~~~~~~L~~l~~L~~L~l~~~~~~ 442 (848)
.+..+..+++|+.|++++|.+.
T Consensus 145 -------~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 145 -------APGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp -------CTTTTTTCTTCCEEECCSCCEE
T ss_pred -------CHHHhcCCCCCCEEEecCcCCc
Confidence 3456777788888888777543
No 116
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.42 E-value=4.5e-13 Score=132.72 Aligned_cols=149 Identities=19% Similarity=0.193 Sum_probs=92.3
Q ss_pred ceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCCCCchhhhcccCcEEEccCccccCCc
Q 003090 258 QALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLPSSLSFLINLRTLRLHDRRIQGDL 337 (848)
Q Consensus 258 ~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~~ 337 (848)
+.++.+++.+..+|..+ .++++.|++++ +.+... .+..+..+++|++|++++|.+....
T Consensus 14 ~~v~c~~~~l~~iP~~l---~~~l~~L~l~~--------------n~i~~i----~~~~~~~l~~L~~L~Ls~N~i~~~~ 72 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNL---PETITEIRLEQ--------------NTIKVI----PPGAFSPYKKLRRIDLSNNQISELA 72 (220)
T ss_dssp TEEECTTSCCSSCCSSC---CTTCCEEECCS--------------SCCCEE----CTTSSTTCTTCCEEECCSSCCCEEC
T ss_pred CEEEcCCCCcCcCCCcc---CcCCCEEECCC--------------CcCCCc----CHhHhhCCCCCCEEECCCCcCCCcC
Confidence 45666666666666543 25677777777 666652 2335666777777777777665543
Q ss_pred -hhhccccCCCEEEccCCCCcccChh-hccCCcccEEeccCCccccccChhhhhccccccEEeccccccccccccccccc
Q 003090 338 -SLIGELSGLEILDLSESDVSEIPVS-FGRLSHLRLLDLTGCYILELIPRGVLSRLRKLEELYMSHSFRHWQFESESEED 415 (848)
Q Consensus 338 -~~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 415 (848)
..+..+++|++|++++|.++.+|.. +..+++|++|++++|.+....|.. +..+++|++|++++|.+...
T Consensus 73 ~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~-------- 143 (220)
T 2v9t_B 73 PDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDA-FQDLHNLNLLSLYDNKLQTI-------- 143 (220)
T ss_dssp TTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT-TTTCTTCCEEECCSSCCSCC--------
T ss_pred HHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHH-cCCCCCCCEEECCCCcCCEE--------
Confidence 5666777777777777777766654 456777777777776554433333 66667777777776666543
Q ss_pred cCcccchhhhcccCCCcEEEeeccCC
Q 003090 416 SSSNAKFIELGALSRLTSLHIHIPEG 441 (848)
Q Consensus 416 ~~~~~~~~~L~~l~~L~~L~l~~~~~ 441 (848)
....+..+++|+.|++++|.+
T Consensus 144 -----~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 144 -----AKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp -----CTTTTTTCTTCCEEECCSSCE
T ss_pred -----CHHHHhCCCCCCEEEeCCCCc
Confidence 223455566666666666643
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.39 E-value=1.6e-13 Score=155.37 Aligned_cols=184 Identities=18% Similarity=0.144 Sum_probs=143.4
Q ss_pred chhHHHHHHHhccCCCceeeecCC-------------Cc-ccCCcc-cccccceee-cccCcCcccChHHH-----c--c
Q 003090 221 SITKIQYEIAGWLDLTGISLMFND-------------IH-EVPDEL-ECPKLQALF-LQENSPLAIPDRFF-----Q--G 277 (848)
Q Consensus 221 ~~~~l~~~i~~~~~l~~l~l~~n~-------------l~-~lp~~~-~~~~L~~L~-l~~~~~~~~~~~~~-----~--~ 277 (848)
.+..++.+|.....++.|++++|. +. ..|..+ .+++|+.|+ ++.|.+..++...+ . .
T Consensus 360 ~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~ 439 (567)
T 1dce_A 360 KSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKME 439 (567)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhhhhhhcccccccC
Confidence 356788888888888888886653 22 334444 678888887 56554433332111 1 1
Q ss_pred CCceeEEEccCcccccccccCCCCCCCCCCCCCCCCCchhhhcccCcEEEccCccccCCchhhccccCCCEEEccCCCCc
Q 003090 278 MKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLPSSLSFLINLRTLRLHDRRIQGDLSLIGELSGLEILDLSESDVS 357 (848)
Q Consensus 278 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~~i~~l~~L~~L~l~~~~l~ 357 (848)
...|++|++++ +.+++ +|. ++.+++|++|++++|.+...|..++++++|++|++++|.++
T Consensus 440 ~~~L~~L~Ls~--------------n~l~~-----lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~ 499 (567)
T 1dce_A 440 YADVRVLHLAH--------------KDLTV-----LCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALE 499 (567)
T ss_dssp HTTCSEEECTT--------------SCCSS-----CCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred ccCceEEEecC--------------CCCCC-----CcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCC
Confidence 23589999999 88988 887 99999999999999999988899999999999999999999
Q ss_pred ccChhhccCCcccEEeccCCcccccc-ChhhhhccccccEEeccccccccccccccccccCcccchhhhcccCCCcEEEe
Q 003090 358 EIPVSFGRLSHLRLLDLTGCYILELI-PRGVLSRLRKLEELYMSHSFRHWQFESESEEDSSSNAKFIELGALSRLTSLHI 436 (848)
Q Consensus 358 ~lp~~i~~L~~L~~L~l~~~~~~~~~-p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l 436 (848)
.+| .++++++|++|++++|.+.+.. |.. ++.+++|+.|++++|.+....+. ....+..+++|+.|++
T Consensus 500 ~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~-l~~l~~L~~L~L~~N~l~~~~~~----------~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 500 NVD-GVANLPRLQELLLCNNRLQQSAAIQP-LVSCPRLVLLNLQGNSLCQEEGI----------QERLAEMLPSVSSILT 567 (567)
T ss_dssp CCG-GGTTCSSCCEEECCSSCCCSSSTTGG-GGGCTTCCEEECTTSGGGGSSSC----------TTHHHHHCTTCSEEEC
T ss_pred CCc-ccCCCCCCcEEECCCCCCCCCCCcHH-HhcCCCCCEEEecCCcCCCCccH----------HHHHHHHCcccCccCC
Confidence 999 8999999999999998776654 777 89999999999999998765322 3344556889998864
No 118
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.38 E-value=1.8e-12 Score=122.59 Aligned_cols=140 Identities=21% Similarity=0.159 Sum_probs=116.6
Q ss_pred cCCceeEEEccCcccccccccCCCCCCCCC-CCCCCCCCchhhhcccCcEEEccCccccCCchhhccccCCCEEEccCCC
Q 003090 277 GMKDLQVLDLGGIRRFSFSVRFPFLFPPLP-SSPLFLLPSSLSFLINLRTLRLHDRRIQGDLSLIGELSGLEILDLSESD 355 (848)
Q Consensus 277 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~-~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~~i~~l~~L~~L~l~~~~ 355 (848)
..++|+.|++++ +.+. +. +|..+..+++|++|++++|.+... ..++.+++|++|++++|.
T Consensus 22 ~~~~L~~L~l~~--------------n~l~~~~----i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~ 82 (168)
T 2ell_A 22 TPAAVRELVLDN--------------CKSNDGK----IEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENR 82 (168)
T ss_dssp CTTSCSEEECCS--------------CBCBTTB----CSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCC
T ss_pred CcccCCEEECCC--------------CCCChhh----HHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCc
Confidence 457899999999 7776 22 888889999999999999987766 889999999999999999
Q ss_pred Ccc-cChhhccCCcccEEeccCCccccccC--hhhhhccccccEEeccccccccccccccccccCcccchhhhcccCCCc
Q 003090 356 VSE-IPVSFGRLSHLRLLDLTGCYILELIP--RGVLSRLRKLEELYMSHSFRHWQFESESEEDSSSNAKFIELGALSRLT 432 (848)
Q Consensus 356 l~~-lp~~i~~L~~L~~L~l~~~~~~~~~p--~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~ 432 (848)
++. +|..+.++++|++|++++|... .+| .. +..+++|++|++++|.+....+ .....+..+++|+
T Consensus 83 l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~-l~~l~~L~~L~l~~N~l~~~~~----------~~~~~~~~l~~L~ 150 (168)
T 2ell_A 83 IFGGLDMLAEKLPNLTHLNLSGNKLK-DISTLEP-LKKLECLKSLDLFNCEVTNLND----------YRESVFKLLPQLT 150 (168)
T ss_dssp CCSCCCHHHHHCTTCCEEECBSSSCC-SSGGGGG-GSSCSCCCEEECCSSGGGTSTT----------HHHHHHTTCSSCC
T ss_pred CchHHHHHHhhCCCCCEEeccCCccC-cchhHHH-HhcCCCCCEEEeeCCcCcchHH----------HHHHHHHhCccCc
Confidence 997 8888888999999999998664 444 44 8999999999999998875311 0124788999999
Q ss_pred EEEeeccCCCCCCCC
Q 003090 433 SLHIHIPEGKIMPSD 447 (848)
Q Consensus 433 ~L~l~~~~~~~~~~~ 447 (848)
.|++++|....+|..
T Consensus 151 ~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 151 YLDGYDREDQEAPDS 165 (168)
T ss_dssp EETTEETTSCBCCSS
T ss_pred EecCCCCChhhcccc
Confidence 999999998877764
No 119
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.37 E-value=2.8e-12 Score=144.34 Aligned_cols=167 Identities=14% Similarity=0.161 Sum_probs=135.4
Q ss_pred hhHHHHHHHhccCCCceeeecCCCcccCCcccccccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCC
Q 003090 222 ITKIQYEIAGWLDLTGISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFL 301 (848)
Q Consensus 222 ~~~l~~~i~~~~~l~~l~l~~n~l~~lp~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~ 301 (848)
+..++..+. ..++.|++++|.+..+| ..+++|++|++++|.+..+|. +.+ +|++|++++
T Consensus 71 L~~lp~~l~--~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~Ls~------------- 129 (571)
T 3cvr_A 71 LSSLPDNLP--PQITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPE--LPA--SLKHLDVDN------------- 129 (571)
T ss_dssp CSCCCSCCC--TTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC--CCT--TCCEEECCS-------------
T ss_pred CCccCHhHc--CCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcch--hhc--CCCEEECCC-------------
Confidence 334444333 35899999999999999 457899999999999988887 333 999999999
Q ss_pred CCCCCCCCCCCCCchhhhcccCcEEEccCccccCCchhhccccCCCEEEccCCCCcccChhhccCCcccEEeccCCcccc
Q 003090 302 FPPLPSSPLFLLPSSLSFLINLRTLRLHDRRIQGDLSLIGELSGLEILDLSESDVSEIPVSFGRLSHLRLLDLTGCYILE 381 (848)
Q Consensus 302 ~~~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~ 381 (848)
|.+.+ +|. .+++|++|++++|.+...+. .+++|++|++++|.++.+|. +. ++|++|++++|.+.
T Consensus 130 -N~l~~-----lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~- 193 (571)
T 3cvr_A 130 -NQLTM-----LPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLE- 193 (571)
T ss_dssp -SCCSC-----CCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCS-
T ss_pred -CcCCC-----CCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCC-
Confidence 88888 777 68899999999998877555 67899999999999999998 66 89999999998654
Q ss_pred ccChhhhhccccc-------cEEeccccccccccccccccccCcccchhhhcccCCCcEEEeeccCCCC
Q 003090 382 LIPRGVLSRLRKL-------EELYMSHSFRHWQFESESEEDSSSNAKFIELGALSRLTSLHIHIPEGKI 443 (848)
Q Consensus 382 ~~p~~~l~~l~~L-------~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~ 443 (848)
.+|. +.. +| +.|++++|.+.. .+..+..+++|+.|++++|.+..
T Consensus 194 ~lp~--~~~--~L~~~~~~L~~L~Ls~N~l~~--------------lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 194 SLPA--VPV--RNHHSEETEIFFRCRENRITH--------------IPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp SCCC--CC----------CCEEEECCSSCCCC--------------CCGGGGGSCTTEEEECCSSSCCH
T ss_pred chhh--HHH--hhhcccccceEEecCCCccee--------------cCHHHhcCCCCCEEEeeCCcCCC
Confidence 6777 343 66 999999998864 45677889999999999998763
No 120
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.37 E-value=1.1e-12 Score=140.74 Aligned_cols=164 Identities=23% Similarity=0.297 Sum_probs=136.8
Q ss_pred chhHHHHHHHhccCCCceeeecCCCcccCCcc---cccccceeecccCcCcccChHHHccCCceeEEEccCccccccccc
Q 003090 221 SITKIQYEIAGWLDLTGISLMFNDIHEVPDEL---ECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVR 297 (848)
Q Consensus 221 ~~~~l~~~i~~~~~l~~l~l~~n~l~~lp~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~ 297 (848)
.+..++..+.. .++.|++++|.+..++... .+++|++|++++|.+..++...|.++++|++|+|++
T Consensus 29 ~l~~iP~~~~~--~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~--------- 97 (361)
T 2xot_A 29 QLPNVPQSLPS--YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS--------- 97 (361)
T ss_dssp CCSSCCSSCCT--TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS---------
T ss_pred CcCccCccCCC--CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC---------
Confidence 34444444433 3678999999999988764 789999999999999999988789999999999999
Q ss_pred CCCCCCCCCCCCCCCCCchhhhcccCcEEEccCccccCCc-hhhccccCCCEEEccCCCCcccChhh----ccCCcccEE
Q 003090 298 FPFLFPPLPSSPLFLLPSSLSFLINLRTLRLHDRRIQGDL-SLIGELSGLEILDLSESDVSEIPVSF----GRLSHLRLL 372 (848)
Q Consensus 298 ~~~~~~~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~~-~~i~~l~~L~~L~l~~~~l~~lp~~i----~~L~~L~~L 372 (848)
|.+... .+..+..+.+|++|+|++|.+.... ..+..+++|++|++++|.++.+|..+ ..+++|++|
T Consensus 98 -----N~l~~~----~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L 168 (361)
T 2xot_A 98 -----NHLHTL----DEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLL 168 (361)
T ss_dssp -----SCCCEE----CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEE
T ss_pred -----CcCCcC----CHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEE
Confidence 888873 3456899999999999999888764 78999999999999999999999875 679999999
Q ss_pred eccCCccccccChhhhhcccc--ccEEeccccccc
Q 003090 373 DLTGCYILELIPRGVLSRLRK--LEELYMSHSFRH 405 (848)
Q Consensus 373 ~l~~~~~~~~~p~~~l~~l~~--L~~L~l~~~~~~ 405 (848)
++++|.+ ..+|...+..++. |+.|++.+|.+.
T Consensus 169 ~L~~N~l-~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 169 DLSSNKL-KKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp ECCSSCC-CCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred ECCCCCC-CccCHHHhhhccHhhcceEEecCCCcc
Confidence 9999865 4677666888887 488999998764
No 121
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.33 E-value=6.1e-13 Score=155.66 Aligned_cols=150 Identities=22% Similarity=0.237 Sum_probs=103.1
Q ss_pred ceeeecCCCcccCCcc-cccccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCCCCc
Q 003090 237 GISLMFNDIHEVPDEL-ECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLPS 315 (848)
Q Consensus 237 ~l~l~~n~l~~lp~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp~ 315 (848)
.++++.|.+...+..+ .++.|+.|+|++|.+..+|..++ ++++|++|+|++ |.+.. +|.
T Consensus 205 ~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~-~l~~L~~L~Ls~--------------N~l~~-----lp~ 264 (727)
T 4b8c_D 205 EDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIF-KYDFLTRLYLNG--------------NSLTE-----LPA 264 (727)
T ss_dssp -----------------CCCCCCEEECTTSCCSCCCGGGG-GCCSCSCCBCTT--------------SCCSC-----CCG
T ss_pred CccccccceecChhhhccCCCCcEEECCCCCCCCCChhhc-CCCCCCEEEeeC--------------CcCcc-----cCh
Confidence 3444455555444444 77888888888888888887765 788888888888 77775 888
Q ss_pred hhhhcccCcEEEccCccccCCchhhccccCCCEEEccCCCCcccChhhccCCcccEEeccCCccccccChhhhhcccc-c
Q 003090 316 SLSFLINLRTLRLHDRRIQGDLSLIGELSGLEILDLSESDVSEIPVSFGRLSHLRLLDLTGCYILELIPRGVLSRLRK-L 394 (848)
Q Consensus 316 ~~~~l~~L~~L~L~~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~l~~l~~-L 394 (848)
.++.+++|++|+|++|.+...+..++++++|++|+|++|.++.+|..+++|++|++|++++|.+.+.+|.. +..+.. +
T Consensus 265 ~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~-~~~~~~~~ 343 (727)
T 4b8c_D 265 EIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKI-LTEKSVTG 343 (727)
T ss_dssp GGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHH-HHHHHHHH
T ss_pred hhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHH-Hhhcchhh
Confidence 88888888888888888776677788888888888888888888888888888888888888777666655 444322 2
Q ss_pred cEEeccccccccc
Q 003090 395 EELYMSHSFRHWQ 407 (848)
Q Consensus 395 ~~L~l~~~~~~~~ 407 (848)
..|++.+|.+.+.
T Consensus 344 ~~l~l~~N~l~~~ 356 (727)
T 4b8c_D 344 LIFYLRDNRPEIP 356 (727)
T ss_dssp HHHHHHHCCCCCC
T ss_pred hHHhhccCcccCc
Confidence 2356677766554
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.31 E-value=5.1e-12 Score=119.39 Aligned_cols=130 Identities=26% Similarity=0.301 Sum_probs=81.1
Q ss_pred cccceeecccCcCc--ccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCCCCchhhhcccCcEEEccCcc
Q 003090 255 PKLQALFLQENSPL--AIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLPSSLSFLINLRTLRLHDRR 332 (848)
Q Consensus 255 ~~L~~L~l~~~~~~--~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp~~~~~l~~L~~L~L~~~~ 332 (848)
++|++|++++|.+. .+|.. +..+++|++|++++ +.+.. + ..+..+++|++|++++|.
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~--------------n~l~~-----~-~~~~~l~~L~~L~Ls~N~ 82 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLIN--------------VGLIS-----V-SNLPKLPKLKKLELSENR 82 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEES--------------SCCCC-----C-SSCCCCSSCCEEEEESCC
T ss_pred ccCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcC--------------CCCCC-----h-hhhccCCCCCEEECcCCc
Confidence 55666666666555 55544 45666667777766 55555 4 456666667777777766
Q ss_pred ccCC-chhhccccCCCEEEccCCCCcccC--hhhccCCcccEEeccCCccccccCh---hhhhccccccEEecccccccc
Q 003090 333 IQGD-LSLIGELSGLEILDLSESDVSEIP--VSFGRLSHLRLLDLTGCYILELIPR---GVLSRLRKLEELYMSHSFRHW 406 (848)
Q Consensus 333 ~~~~-~~~i~~l~~L~~L~l~~~~l~~lp--~~i~~L~~L~~L~l~~~~~~~~~p~---~~l~~l~~L~~L~l~~~~~~~ 406 (848)
+... +..+.++++|++|++++|.++.+| ..+..+++|++|++++|.... +|. ..+..+++|++|++++|....
T Consensus 83 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~-~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 83 IFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTN-LNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp CCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGT-STTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred CchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcc-hHHHHHHHHHhCccCcEecCCCCChhh
Confidence 6653 344555777777777777776655 566677777777777765443 443 236677777777777766543
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.29 E-value=5.8e-12 Score=116.32 Aligned_cols=63 Identities=30% Similarity=0.495 Sum_probs=29.2
Q ss_pred hhhhcccCcEEEccCccccCC-chhhccccCCCEEEccCCCCcccC--hhhccCCcccEEeccCCc
Q 003090 316 SLSFLINLRTLRLHDRRIQGD-LSLIGELSGLEILDLSESDVSEIP--VSFGRLSHLRLLDLTGCY 378 (848)
Q Consensus 316 ~~~~l~~L~~L~L~~~~~~~~-~~~i~~l~~L~~L~l~~~~l~~lp--~~i~~L~~L~~L~l~~~~ 378 (848)
.++.+++|++|++++|.+... +..++.+++|++|++++|.++.+| ..++.+++|++|++++|.
T Consensus 59 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~ 124 (149)
T 2je0_A 59 NLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE 124 (149)
T ss_dssp TCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCG
T ss_pred hhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCc
Confidence 344444555555555544442 233334455555555555444432 344445555555555443
No 124
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.29 E-value=8.4e-12 Score=120.62 Aligned_cols=127 Identities=22% Similarity=0.308 Sum_probs=70.5
Q ss_pred CceeeecCCCcccCCcccccccceeecccCcCcccChH-HHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCCCC
Q 003090 236 TGISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDR-FFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLP 314 (848)
Q Consensus 236 ~~l~l~~n~l~~lp~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp 314 (848)
+.+++++|.++.+|..+. .++++|++++|.+..++.. +|..+++|++|++++ +.+.+. .|
T Consensus 11 ~~l~~s~~~l~~ip~~~~-~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~--------------N~l~~~----~~ 71 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP-LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKR--------------NQLTGI----EP 71 (192)
T ss_dssp TEEECTTSCCSSCCSCCC-TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCS--------------SCCCCB----CT
T ss_pred CEEEcCCCCcCcCccCCC-CCCCEEECCCCcCCccCCccccccCCCCCEEECCC--------------CCCCCc----CH
Confidence 445666666666665442 2566666666655555542 345666666666666 555552 35
Q ss_pred chhhhcccCcEEEccCccccCCc-hhhccccCCCEEEccCCCCccc-ChhhccCCcccEEeccCCcccc
Q 003090 315 SSLSFLINLRTLRLHDRRIQGDL-SLIGELSGLEILDLSESDVSEI-PVSFGRLSHLRLLDLTGCYILE 381 (848)
Q Consensus 315 ~~~~~l~~L~~L~L~~~~~~~~~-~~i~~l~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~ 381 (848)
..+..+++|++|++++|.+...+ ..+..+++|++|++++|.++.+ |..+..+++|++|++++|.+..
T Consensus 72 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 72 NAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp TTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred hHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 55556666666666666555444 3355555566666655555533 4445555555555555554443
No 125
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.27 E-value=3.1e-12 Score=121.85 Aligned_cols=131 Identities=16% Similarity=0.140 Sum_probs=72.9
Q ss_pred ccccccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCCCCchhhhcccCcEEEccCc
Q 003090 252 LECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLPSSLSFLINLRTLRLHDR 331 (848)
Q Consensus 252 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp~~~~~l~~L~~L~L~~~ 331 (848)
..+.+|++|++++|.+..++. +....++|++|++++ +.+.+ + ..+..+++|++|++++|
T Consensus 16 ~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~--------------N~l~~-----~-~~l~~l~~L~~L~Ls~N 74 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSD--------------NEIRK-----L-DGFPLLRRLKTLLVNNN 74 (176)
T ss_dssp ECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCS--------------SCCCE-----E-CCCCCCSSCCEEECCSS
T ss_pred CCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCC--------------CCCCc-----c-cccccCCCCCEEECCCC
Confidence 355566666666665555543 222233666666666 55554 4 34555666666666666
Q ss_pred cccCCchh-hccccCCCEEEccCCCCcccCh--hhccCCcccEEeccCCccccccChh---hhhccccccEEecccccc
Q 003090 332 RIQGDLSL-IGELSGLEILDLSESDVSEIPV--SFGRLSHLRLLDLTGCYILELIPRG---VLSRLRKLEELYMSHSFR 404 (848)
Q Consensus 332 ~~~~~~~~-i~~l~~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~l~~~~~~~~~p~~---~l~~l~~L~~L~l~~~~~ 404 (848)
.+...++. ++.+++|++|++++|.+..+|. .+..+++|++|++++|... .+|.. .+..+++|+.|++++|..
T Consensus 75 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 75 RICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred cccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 55544432 3566666666666666665554 5556666666666665443 34432 245666666666655543
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.27 E-value=7.3e-12 Score=115.65 Aligned_cols=123 Identities=21% Similarity=0.215 Sum_probs=108.7
Q ss_pred CCCceeeecCCCc--ccCCcc-cccccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCC
Q 003090 234 DLTGISLMFNDIH--EVPDEL-ECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPL 310 (848)
Q Consensus 234 ~l~~l~l~~n~l~--~lp~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~ 310 (848)
.++.+++++|.+. .+|..+ .+++|++|++++|.+..+ ..+..+++|++|++++ +.+.+.
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~--------------n~i~~~-- 79 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSD--------------NRVSGG-- 79 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCS--------------SCCCSC--
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCC--------------Ccccch--
Confidence 4789999999998 888876 899999999999988888 3468999999999999 888875
Q ss_pred CCCCchhhhcccCcEEEccCccccCCc--hhhccccCCCEEEccCCCCcccCh----hhccCCcccEEeccC
Q 003090 311 FLLPSSLSFLINLRTLRLHDRRIQGDL--SLIGELSGLEILDLSESDVSEIPV----SFGRLSHLRLLDLTG 376 (848)
Q Consensus 311 ~~lp~~~~~l~~L~~L~L~~~~~~~~~--~~i~~l~~L~~L~l~~~~l~~lp~----~i~~L~~L~~L~l~~ 376 (848)
+|..+..+++|++|++++|.+...+ ..++.+++|++|++++|.++.+|. .++.+++|++|++++
T Consensus 80 --~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 80 --LEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp --THHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred --HHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 7777888999999999999887754 789999999999999999998876 688899999998763
No 127
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.27 E-value=2.3e-11 Score=117.40 Aligned_cols=91 Identities=30% Similarity=0.394 Sum_probs=45.2
Q ss_pred CCchhhhcccCcEEEccCccccCCc-hhhccccCCCEEEccCCCCcccCh-hhccCCcccEEeccCCccccccChhhhhc
Q 003090 313 LPSSLSFLINLRTLRLHDRRIQGDL-SLIGELSGLEILDLSESDVSEIPV-SFGRLSHLRLLDLTGCYILELIPRGVLSR 390 (848)
Q Consensus 313 lp~~~~~l~~L~~L~L~~~~~~~~~-~~i~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~~l~~ 390 (848)
+|..+..+++|++|++++|.+...+ ..+..+++|++|++++|.++.+|. .+..+++|++|++++|.+. .+|.+.+..
T Consensus 46 ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~ 124 (193)
T 2wfh_A 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFND 124 (193)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTT
T ss_pred hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCC-eeChhhhhc
Confidence 4444555555555555555444443 334555555555555555554433 3455555555555554332 344433455
Q ss_pred cccccEEecccccc
Q 003090 391 LRKLEELYMSHSFR 404 (848)
Q Consensus 391 l~~L~~L~l~~~~~ 404 (848)
+++|+.|++++|.+
T Consensus 125 l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 125 LSALSHLAIGANPL 138 (193)
T ss_dssp CTTCCEEECCSSCE
T ss_pred CccccEEEeCCCCe
Confidence 55555555555544
No 128
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.26 E-value=1.3e-11 Score=119.21 Aligned_cols=126 Identities=21% Similarity=0.223 Sum_probs=95.2
Q ss_pred ceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCCCCc--hhhhcccCcEEEccCccccC
Q 003090 258 QALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLPS--SLSFLINLRTLRLHDRRIQG 335 (848)
Q Consensus 258 ~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp~--~~~~l~~L~~L~L~~~~~~~ 335 (848)
+++++++|.++.+|..++ .++++|++++ +.+.. ++. .++.+++|++|++++|.+..
T Consensus 11 ~~l~~s~~~l~~ip~~~~---~~l~~L~l~~--------------n~i~~-----~~~~~~~~~l~~L~~L~Ls~N~l~~ 68 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP---LHTTELLLND--------------NELGR-----ISSDGLFGRLPHLVKLELKRNQLTG 68 (192)
T ss_dssp TEEECTTSCCSSCCSCCC---TTCSEEECCS--------------CCCCS-----BCCSCSGGGCTTCCEEECCSSCCCC
T ss_pred CEEEcCCCCcCcCccCCC---CCCCEEECCC--------------CcCCc-----cCCccccccCCCCCEEECCCCCCCC
Confidence 677888888888887543 3788888888 77776 554 37888888888888887777
Q ss_pred Cc-hhhccccCCCEEEccCCCCcccChh-hccCCcccEEeccCCccccccChhhhhccccccEEecccccccc
Q 003090 336 DL-SLIGELSGLEILDLSESDVSEIPVS-FGRLSHLRLLDLTGCYILELIPRGVLSRLRKLEELYMSHSFRHW 406 (848)
Q Consensus 336 ~~-~~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~ 406 (848)
.. ..+..+++|++|++++|.++.++.. +..+++|++|++++|.+.+..|.. +..+++|++|++++|.+..
T Consensus 69 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 69 IEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGS-FEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp BCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTS-STTCTTCCEEECTTCCBCC
T ss_pred cCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHH-hhcCCCCCEEEeCCCCccC
Confidence 64 6778888888888888888866543 777888888888887766655555 7788888888888877654
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.26 E-value=2.6e-11 Score=115.56 Aligned_cols=127 Identities=24% Similarity=0.335 Sum_probs=80.4
Q ss_pred CceeeecCCCcccCCcccccccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCCCC-
Q 003090 236 TGISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLP- 314 (848)
Q Consensus 236 ~~l~l~~n~l~~lp~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp- 314 (848)
++++++++.+..+|..+. ++|++|++++|.+..++...|..+++|++|++++ +.+.. +|
T Consensus 10 ~~l~~~~~~l~~~p~~~~-~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~--------------n~l~~-----~~~ 69 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGIP-SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQ--------------NQIQS-----LPD 69 (177)
T ss_dssp TEEECCSSCCSSCCTTCC-TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCS--------------SCCCC-----CCT
T ss_pred CEEEecCCCCccCCCCCC-CCCcEEEeCCCcccEeCHHHhcCcccccEEECCC--------------CcceE-----eCh
Confidence 456667777777765443 5677777777766666666566677777777777 66665 33
Q ss_pred chhhhcccCcEEEccCccccCCc-hhhccccCCCEEEccCCCCcccChh-hccCCcccEEeccCCccccc
Q 003090 315 SSLSFLINLRTLRLHDRRIQGDL-SLIGELSGLEILDLSESDVSEIPVS-FGRLSHLRLLDLTGCYILEL 382 (848)
Q Consensus 315 ~~~~~l~~L~~L~L~~~~~~~~~-~~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~ 382 (848)
..+..+++|++|++++|.+...+ ..+..+++|++|++++|.++.+|.. +..+++|++|++++|.....
T Consensus 70 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 70 GVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred hHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 33566666777777766666555 3356666666666666666666654 35566666666666655443
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.22 E-value=4.6e-11 Score=115.34 Aligned_cols=125 Identities=23% Similarity=0.334 Sum_probs=101.4
Q ss_pred CceeeecCCCcccCCcccccccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCCCCc
Q 003090 236 TGISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLPS 315 (848)
Q Consensus 236 ~~l~l~~n~l~~lp~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp~ 315 (848)
+.+++++|.+..+|..+. +++++|++++|.+..+|.. |.++++|++|++++ +.+... .+.
T Consensus 13 ~~l~~~~~~l~~ip~~~~-~~l~~L~L~~n~i~~ip~~-~~~l~~L~~L~Ls~--------------N~i~~i----~~~ 72 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP-RDVTELYLDGNQFTLVPKE-LSNYKHLTLIDLSN--------------NRISTL----SNQ 72 (193)
T ss_dssp TEEECTTSCCSSCCSCCC-TTCCEEECCSSCCCSCCGG-GGGCTTCCEEECCS--------------SCCCCC----CTT
T ss_pred CEEEcCCCCCCcCCCCCC-CCCCEEECCCCcCchhHHH-hhcccCCCEEECCC--------------CcCCEe----CHh
Confidence 467888888888887663 6788899998888888854 67888999999988 778773 446
Q ss_pred hhhhcccCcEEEccCccccCCc-hhhccccCCCEEEccCCCCcccChh-hccCCcccEEeccCCccc
Q 003090 316 SLSFLINLRTLRLHDRRIQGDL-SLIGELSGLEILDLSESDVSEIPVS-FGRLSHLRLLDLTGCYIL 380 (848)
Q Consensus 316 ~~~~l~~L~~L~L~~~~~~~~~-~~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~ 380 (848)
.|..+++|++|+|++|.+...+ ..+..+++|++|++++|.++.+|.. +..+++|++|++++|...
T Consensus 73 ~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 73 SFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp TTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred HccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 6888889999999998887776 5688888999999999988888764 778888999998887654
No 131
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.22 E-value=3e-11 Score=115.01 Aligned_cols=136 Identities=17% Similarity=0.184 Sum_probs=105.0
Q ss_pred HccCCceeEEEccCcccccccccCCCCCCCCCCCCCCCCCchhhhcc-cCcEEEccCccccCCchhhccccCCCEEEccC
Q 003090 275 FQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLPSSLSFLI-NLRTLRLHDRRIQGDLSLIGELSGLEILDLSE 353 (848)
Q Consensus 275 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp~~~~~l~-~L~~L~L~~~~~~~~~~~i~~l~~L~~L~l~~ 353 (848)
+..+.+|+.|++++ +.+.. +|. +..+. +|++|++++|.+... +.++.+++|++|++++
T Consensus 15 ~~~~~~L~~L~l~~--------------n~l~~-----i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~ 73 (176)
T 1a9n_A 15 YTNAVRDRELDLRG--------------YKIPV-----IEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNN 73 (176)
T ss_dssp EECTTSCEEEECTT--------------SCCCS-----CCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCS
T ss_pred cCCcCCceEEEeeC--------------CCCch-----hHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCC
Confidence 45788899999999 77776 655 55555 899999999976654 7888899999999999
Q ss_pred CCCcccChhh-ccCCcccEEeccCCccccccCh-hhhhccccccEEeccccccccccccccccccCcccchhhhcccCCC
Q 003090 354 SDVSEIPVSF-GRLSHLRLLDLTGCYILELIPR-GVLSRLRKLEELYMSHSFRHWQFESESEEDSSSNAKFIELGALSRL 431 (848)
Q Consensus 354 ~~l~~lp~~i-~~L~~L~~L~l~~~~~~~~~p~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L 431 (848)
|.++.+|..+ +.+++|++|++++|.. +.+|. ..+..+++|+.|++++|.+... +. .....+..+++|
T Consensus 74 N~l~~~~~~~~~~l~~L~~L~L~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i~~~-~~---------~~~~~~~~l~~L 142 (176)
T 1a9n_A 74 NRICRIGEGLDQALPDLTELILTNNSL-VELGDLDPLASLKSLTYLCILRNPVTNK-KH---------YRLYVIYKVPQV 142 (176)
T ss_dssp SCCCEECSCHHHHCTTCCEEECCSCCC-CCGGGGGGGGGCTTCCEEECCSSGGGGS-TT---------HHHHHHHHCTTC
T ss_pred CcccccCcchhhcCCCCCEEECCCCcC-CcchhhHhhhcCCCCCEEEecCCCCCCc-Hh---------HHHHHHHHCCcc
Confidence 9999888665 8899999999999765 55665 2278899999999999887632 10 012247888899
Q ss_pred cEEEeeccCCC
Q 003090 432 TSLHIHIPEGK 442 (848)
Q Consensus 432 ~~L~l~~~~~~ 442 (848)
+.|+++.|...
T Consensus 143 ~~Ld~~~n~~~ 153 (176)
T 1a9n_A 143 RVLDFQKVKLK 153 (176)
T ss_dssp SEETTEECCHH
T ss_pred ceeCCCcCCHH
Confidence 99988887643
No 132
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.22 E-value=1.4e-11 Score=144.29 Aligned_cols=152 Identities=22% Similarity=0.224 Sum_probs=104.0
Q ss_pred CceeeecCCCcccCCcc-ccccccee-----ecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCC
Q 003090 236 TGISLMFNDIHEVPDEL-ECPKLQAL-----FLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSP 309 (848)
Q Consensus 236 ~~l~l~~n~l~~lp~~~-~~~~L~~L-----~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~ 309 (848)
+.+++..|.+...+... ...+|+.+ ++.+|.+. ++...|..++.|++|+|++ +.+..
T Consensus 176 ~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~--------------n~l~~-- 238 (727)
T 4b8c_D 176 PKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSN--------------LQIFN-- 238 (727)
T ss_dssp -----------------------------------------------CCCCCCEEECTT--------------SCCSC--
T ss_pred ceEEeeCCCCCcchhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCC--------------CCCCC--
Confidence 45566666666554433 33333332 33444444 4455678999999999999 88887
Q ss_pred CCCCCchhhhcccCcEEEccCccccCCchhhccccCCCEEEccCCCCcccChhhccCCcccEEeccCCccccccChhhhh
Q 003090 310 LFLLPSSLSFLINLRTLRLHDRRIQGDLSLIGELSGLEILDLSESDVSEIPVSFGRLSHLRLLDLTGCYILELIPRGVLS 389 (848)
Q Consensus 310 ~~~lp~~~~~l~~L~~L~L~~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~l~ 389 (848)
+|..+..+++|++|+|++|.+...+..++++++|++|+|++|.++.+|..+++|++|++|++++|.+ +.+|.. ++
T Consensus 239 ---l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l-~~lp~~-~~ 313 (727)
T 4b8c_D 239 ---ISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMV-TTLPWE-FG 313 (727)
T ss_dssp ---CCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCC-CCCCSS-TT
T ss_pred ---CChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCC-CccChh-hh
Confidence 9999999999999999999998777889999999999999999999999999999999999999865 589998 89
Q ss_pred ccccccEEeccccccccccc
Q 003090 390 RLRKLEELYMSHSFRHWQFE 409 (848)
Q Consensus 390 ~l~~L~~L~l~~~~~~~~~~ 409 (848)
++++|++|++++|.+.+.++
T Consensus 314 ~l~~L~~L~L~~N~l~~~~p 333 (727)
T 4b8c_D 314 NLCNLQFLGVEGNPLEKQFL 333 (727)
T ss_dssp SCTTCCCEECTTSCCCSHHH
T ss_pred cCCCccEEeCCCCccCCCCh
Confidence 99999999999999987633
No 133
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.20 E-value=1.2e-12 Score=127.33 Aligned_cols=137 Identities=20% Similarity=0.236 Sum_probs=63.0
Q ss_pred chhHHHHHHHhccCCCceeeecCCCc-------ccCCcc-cccccceeecccCcCcccChHHHccCCceeEEEccCcccc
Q 003090 221 SITKIQYEIAGWLDLTGISLMFNDIH-------EVPDEL-ECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRF 292 (848)
Q Consensus 221 ~~~~l~~~i~~~~~l~~l~l~~n~l~-------~lp~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~ 292 (848)
......+.+.....++.++++.+.+. .+|..+ .+++|++|++++|.+..+| .+.++++|++|++++
T Consensus 6 ~~~~~~~~~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~---- 79 (198)
T 1ds9_A 6 TIKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGR---- 79 (198)
T ss_dssp CHHHHHHHHHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEE----
T ss_pred HHHHHHHHHHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCC----
Confidence 34444444444444544444444443 222223 4445555555555444444 134455555555555
Q ss_pred cccccCCCCCCCCCCCCCCCCCchhhhcccCcEEEccCccccCCchhhccccCCCEEEccCCCCcccCh--hhccCCccc
Q 003090 293 SFSVRFPFLFPPLPSSPLFLLPSSLSFLINLRTLRLHDRRIQGDLSLIGELSGLEILDLSESDVSEIPV--SFGRLSHLR 370 (848)
Q Consensus 293 ~~~~~~~~~~~~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~--~i~~L~~L~ 370 (848)
+.+.. +|..+..+++|++|++++|.+.. ++.++.+++|++|++++|.++.+|. .+..+++|+
T Consensus 80 ----------n~l~~-----l~~~~~~~~~L~~L~L~~N~l~~-l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~ 143 (198)
T 1ds9_A 80 ----------NLIKK-----IENLDAVADTLEELWISYNQIAS-LSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLE 143 (198)
T ss_dssp ----------EEECS-----CSSHHHHHHHCSEEEEEEEECCC-HHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCS
T ss_pred ----------CCccc-----ccchhhcCCcCCEEECcCCcCCc-CCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCC
Confidence 44443 44444444555555555554333 2244445555555555554444332 344445555
Q ss_pred EEeccCCcc
Q 003090 371 LLDLTGCYI 379 (848)
Q Consensus 371 ~L~l~~~~~ 379 (848)
+|++++|..
T Consensus 144 ~L~l~~N~l 152 (198)
T 1ds9_A 144 DLLLAGNPL 152 (198)
T ss_dssp EEEECSCHH
T ss_pred EEEecCCcc
Confidence 555544433
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.14 E-value=2.2e-10 Score=109.09 Aligned_cols=129 Identities=22% Similarity=0.332 Sum_probs=95.8
Q ss_pred cceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCCCCchhhhcccCcEEEccCccccCC
Q 003090 257 LQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLPSSLSFLINLRTLRLHDRRIQGD 336 (848)
Q Consensus 257 L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~ 336 (848)
.+.++++++.+..+|..+ .++|+.|++++ +.+... .+..+..+++|++|++++|.+...
T Consensus 9 ~~~l~~~~~~l~~~p~~~---~~~l~~L~l~~--------------n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~ 67 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI---PSSATRLELES--------------NKLQSL----PHGVFDKLTQLTKLSLSQNQIQSL 67 (177)
T ss_dssp TTEEECCSSCCSSCCTTC---CTTCSEEECCS--------------SCCCCC----CTTTTTTCTTCSEEECCSSCCCCC
T ss_pred CCEEEecCCCCccCCCCC---CCCCcEEEeCC--------------CcccEe----CHHHhcCcccccEEECCCCcceEe
Confidence 466777888888887643 46788888888 777762 334467888888888888877766
Q ss_pred c-hhhccccCCCEEEccCCCCcccChh-hccCCcccEEeccCCccccccChhhhhccccccEEeccccccccc
Q 003090 337 L-SLIGELSGLEILDLSESDVSEIPVS-FGRLSHLRLLDLTGCYILELIPRGVLSRLRKLEELYMSHSFRHWQ 407 (848)
Q Consensus 337 ~-~~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~ 407 (848)
+ ..++.+++|++|++++|.++.+|.. +..+++|++|++++|.+. .+|...+..+++|++|++++|.+...
T Consensus 68 ~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 68 PDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred ChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcce-EeCHHHhcCCcccCEEEecCCCeecc
Confidence 6 4467888888888888888877764 577888888888887554 56666567788888888888876543
No 135
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.13 E-value=9.1e-11 Score=132.93 Aligned_cols=76 Identities=16% Similarity=0.147 Sum_probs=68.8
Q ss_pred cchhHHHHHHHHHHhcC---CccEEEEEeCCCCchhHHHHHHHH--HHhhccccCcEEEEEeccCC--chhHHHHHHHhc
Q 003090 160 KSRESTMKDIMEAMKDE---NVSITGICGMGGVGKTTLVKEIQK--QAKEMKMFDDVAMAVVSQTP--SITKIQYEIAGW 232 (848)
Q Consensus 160 vG~~~~~~~i~~~L~~~---~~~vi~i~G~gG~GKTtla~~v~~--~~~~~~~F~~~~wv~vs~~~--~~~~l~~~i~~~ 232 (848)
|||++++++|.++|... +.++|+|+||||+||||||+++|+ +.++..+|+.++|+++++.+ +...+.+.|+..
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 69999999999999843 679999999999999999999999 67889999999999999985 888999999987
Q ss_pred cCC
Q 003090 233 LDL 235 (848)
Q Consensus 233 ~~l 235 (848)
+..
T Consensus 211 l~~ 213 (549)
T 2a5y_B 211 LKS 213 (549)
T ss_dssp HTT
T ss_pred Hhc
Confidence 754
No 136
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.13 E-value=4.2e-12 Score=123.55 Aligned_cols=142 Identities=23% Similarity=0.244 Sum_probs=95.6
Q ss_pred cccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCCCCchhhhcccCcEEEccCccccCCchhhccccCCC
Q 003090 268 LAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLPSSLSFLINLRTLRLHDRRIQGDLSLIGELSGLE 347 (848)
Q Consensus 268 ~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~~i~~l~~L~ 347 (848)
..+|.. +..+++|++|++++ +.+.. +| .+..+++|++|++++|.+...+..+..+++|+
T Consensus 38 ~~l~~~-~~~l~~L~~L~ls~--------------n~l~~-----l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~ 96 (198)
T 1ds9_A 38 EKMDAT-LSTLKACKHLALST--------------NNIEK-----IS-SLSGMENLRILSLGRNLIKKIENLDAVADTLE 96 (198)
T ss_dssp CCCHHH-HHHTTTCSEEECSE--------------EEESC-----CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCS
T ss_pred hhhhHH-HhcCCCCCEEECCC--------------CCCcc-----cc-ccccCCCCCEEECCCCCcccccchhhcCCcCC
Confidence 334443 56788888888888 66766 66 77888888888888887776666677778888
Q ss_pred EEEccCCCCcccChhhccCCcccEEeccCCccccccCh-hhhhccccccEEeccccccccccccccccccCcccchhhhc
Q 003090 348 ILDLSESDVSEIPVSFGRLSHLRLLDLTGCYILELIPR-GVLSRLRKLEELYMSHSFRHWQFESESEEDSSSNAKFIELG 426 (848)
Q Consensus 348 ~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~ 426 (848)
+|++++|.++.+| .+..+++|++|++++|... .++. ..+..+++|++|++++|.+....+.. ..........+.
T Consensus 97 ~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~---~~~~~~~~~~~~ 171 (198)
T 1ds9_A 97 ELWISYNQIASLS-GIEKLVNLRVLYMSNNKIT-NWGEIDKLAALDKLEDLLLAGNPLYNDYKEN---NATSEYRIEVVK 171 (198)
T ss_dssp EEEEEEEECCCHH-HHHHHHHSSEEEESEEECC-CHHHHHHHTTTTTCSEEEECSCHHHHHHHTT---TTHHHHHHHHHH
T ss_pred EEECcCCcCCcCC-ccccCCCCCEEECCCCcCC-chhHHHHHhcCCCCCEEEecCCccccccccc---cchHHHHHHHHH
Confidence 8888888888776 5777888888888886553 3333 22677888888888888765432110 000011123367
Q ss_pred ccCCCcEEE
Q 003090 427 ALSRLTSLH 435 (848)
Q Consensus 427 ~l~~L~~L~ 435 (848)
.+++|+.|+
T Consensus 172 ~l~~L~~Ld 180 (198)
T 1ds9_A 172 RLPNLKKLD 180 (198)
T ss_dssp HCSSCSEEC
T ss_pred hCCCcEEEC
Confidence 777777776
No 137
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.12 E-value=2.3e-10 Score=121.10 Aligned_cols=191 Identities=19% Similarity=0.213 Sum_probs=138.1
Q ss_pred ccCCCceeeecCCCc--------------------ccCCcc--c--------ccccceeecccCcCcccChHHHccCCce
Q 003090 232 WLDLTGISLMFNDIH--------------------EVPDEL--E--------CPKLQALFLQENSPLAIPDRFFQGMKDL 281 (848)
Q Consensus 232 ~~~l~~l~l~~n~l~--------------------~lp~~~--~--------~~~L~~L~l~~~~~~~~~~~~~~~~~~L 281 (848)
...++.|+|++|++. .+|... + |++|+.+.+.. .+..+++..|.++++|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L 126 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL 126 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence 456889999999887 445444 6 89999999998 7888999889999999
Q ss_pred eEEEccCcccccccccCCCCCCCCCCCCCCCCCchhhhcccCcEEEccC-------------------------------
Q 003090 282 QVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLPSSLSFLINLRTLRLHD------------------------------- 330 (848)
Q Consensus 282 r~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp~~~~~l~~L~~L~L~~------------------------------- 330 (848)
+.+++.++ .+... -+..|..+.++.++.+..
T Consensus 127 ~~l~l~~n--------------~i~~i----~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~ 188 (329)
T 3sb4_A 127 KICQIRKK--------------TAPNL----LPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMG 188 (329)
T ss_dssp CEEEBCCS--------------SCCEE----CTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTC
T ss_pred ceEEcCCC--------------Ccccc----chhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCC
Confidence 99999983 33321 222333333333333332
Q ss_pred -----------------------ccccCCchhh-ccccCCCEEEccCCCCcccChh-hccCCcccEEeccCCccccccCh
Q 003090 331 -----------------------RRIQGDLSLI-GELSGLEILDLSESDVSEIPVS-FGRLSHLRLLDLTGCYILELIPR 385 (848)
Q Consensus 331 -----------------------~~~~~~~~~i-~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~ 385 (848)
.-.......+ ..+.+|+.|++++|.++.+|.. +.++.+|+.+++.++ ...++.
T Consensus 189 ~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~ 266 (329)
T 3sb4_A 189 KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQ 266 (329)
T ss_dssp CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECT
T ss_pred cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehH
Confidence 1000000111 1378999999999999988864 888999999999986 677888
Q ss_pred hhhhcccccc-EEeccccccccccccccccccCcccchhhhcccCCCcEEEeeccCCCCCCCCC--ccCCCCeEE
Q 003090 386 GVLSRLRKLE-ELYMSHSFRHWQFESESEEDSSSNAKFIELGALSRLTSLHIHIPEGKIMPSDM--SFQNLTSFS 457 (848)
Q Consensus 386 ~~l~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~ 457 (848)
..|.++++|+ .+.+.. .+... ....+.++++|+.+++..+.+..++... .+++|+.++
T Consensus 267 ~aF~~~~~L~~~l~l~~-~l~~I-------------~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 267 RVFSNCGRLAGTLELPA-SVTAI-------------EFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TTTTTCTTCCEEEEECT-TCCEE-------------CTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred HHhhCChhccEEEEEcc-cceEE-------------chhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 8899999999 999877 44332 3467889999999999999998888765 778888765
No 138
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.03 E-value=8e-10 Score=116.91 Aligned_cols=293 Identities=11% Similarity=0.068 Sum_probs=172.7
Q ss_pred hcccCcEEEccCccccCCchhhcc-ccCCCEEEccCCCCcccChhhccCCcccEEeccCCccccccChhhhhc-------
Q 003090 319 FLINLRTLRLHDRRIQGDLSLIGE-LSGLEILDLSESDVSEIPVSFGRLSHLRLLDLTGCYILELIPRGVLSR------- 390 (848)
Q Consensus 319 ~l~~L~~L~L~~~~~~~~~~~i~~-l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~l~~------- 390 (848)
.+.+++.|.++++-.......+.. +++|++|||++|.+......-+.++.++.+.+..+ .+|...+.+
T Consensus 23 ~~~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~----~I~~~aF~~~~~~~~~ 98 (329)
T 3sb4_A 23 EANSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN----FVPAYAFSNVVNGVTK 98 (329)
T ss_dssp HHHHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT----EECTTTTEEEETTEEE
T ss_pred hhCceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEecCcccccccccccccccc----ccCHHHhccccccccc
Confidence 477899999998622223355555 88999999999988822211223333455555543 567766778
Q ss_pred -cccccEEeccccccccccccccccccCcccchhhhcccCCCcEEEeeccCCCCCCCCC--ccCCCCeEEEEeCCCCCCC
Q 003090 391 -LRKLEELYMSHSFRHWQFESESEEDSSSNAKFIELGALSRLTSLHIHIPEGKIMPSDM--SFQNLTSFSIAIGDLEERP 467 (848)
Q Consensus 391 -l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~ 467 (848)
+++|+.+.+.. .+... ....+.++++|+.|++..|.+..++... .+.++. .+.
T Consensus 99 g~~~L~~l~L~~-~i~~I-------------~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~--~l~-------- 154 (329)
T 3sb4_A 99 GKQTLEKVILSE-KIKNI-------------EDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAI--FIP-------- 154 (329)
T ss_dssp ECTTCCC-CBCT-TCCEE-------------CTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEE--EEC--------
T ss_pred ccCCCcEEECCc-cccch-------------hHHHhhcCcccceEEcCCCCccccchhhhcCCCceE--Eec--------
Confidence 99999999987 55443 3356888999999999988777665543 111111 111
Q ss_pred CCcccceEEecccccccccccCccccchhhHHHHHHHHHhhcceeeeccccccccccccccccCCCCCcEEEEecCCCce
Q 003090 468 LSDFIGLFLQKFKKRCSRAMGLSQDMRISALHSWIKNLLLRSEILALAEVNYFENIVSDLANDGFNELMFLVIFRCNEMK 547 (848)
Q Consensus 468 ~~~l~~l~l~~~~~~c~~~~~l~~~~~l~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~ 547 (848)
+...... .....+......+|..++
T Consensus 155 ----------------------------------------------~~~~~~~---------~~~~~i~~~~f~~~~~L~ 179 (329)
T 3sb4_A 155 ----------------------------------------------LGSSDAY---------RFKNRWEHFAFIEGEPLE 179 (329)
T ss_dssp ----------------------------------------------TTCTHHH---------HTSTTTTTSCEEESCCCE
T ss_pred ----------------------------------------------Ccchhhh---------hccccccccccccccccc
Confidence 0000000 000111111122222222
Q ss_pred eecccccccccccCCCccEEecccccccccccccccccccCCCcceEEEecCchhhHhhhHHHHHhhccCcEEEEeccCC
Q 003090 548 YLLNSLERTLRVTLHKLEWLFIRENQNFVEICHGQLPAGCLSNVKRSDVVDCGSILKILLSHLVQSFQNLQRLRVYSCGL 627 (848)
Q Consensus 548 ~l~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~l~~~~~~~l~~L~~L~l~~c~~ 627 (848)
. .+.+.....+...... ..-...++..+.+.+.-.- ... ..+...+++|++|++.++.
T Consensus 180 ~-----------------~i~~~~~~~l~~~~~~--~~~~~~~~~~l~~~~~l~~-~~~-~~l~~~~~~L~~l~L~~n~- 237 (329)
T 3sb4_A 180 T-----------------TIQVGAMGKLEDEIMK--AGLQPRDINFLTIEGKLDN-ADF-KLIRDYMPNLVSLDISKTN- 237 (329)
T ss_dssp E-----------------EEEECTTCCHHHHHHH--TTCCGGGCSEEEEEECCCH-HHH-HHHHHHCTTCCEEECTTBC-
T ss_pred e-----------------eEEecCCCcHHHHHhh--cccCccccceEEEeeeecH-HHH-HHHHHhcCCCeEEECCCCC-
Confidence 1 1112111111111000 0012455667777664322 222 2233458899999998754
Q ss_pred ceeeeeccccccccccccccCCcCEEecCCCccccccccCCCccccccCcc-EEEeecCccccccccCccccccccceee
Q 003090 628 LVSVFEIERVNIAKEETELFSSLEKLTLWDLPRMTDIWKGDTQFVSLHNLK-KVRVEECDELRQVFPANFGKKAAAEEMV 706 (848)
Q Consensus 628 l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~l~~l~~L~-~L~i~~C~~L~~~~p~~~~~~~~~~~l~ 706 (848)
++.++. ..+..+++|++|++.+ +++.++... |.++++|+ .+.+.+ +++.+-
T Consensus 238 i~~I~~--------~aF~~~~~L~~l~l~~--ni~~I~~~a--F~~~~~L~~~l~l~~--~l~~I~-------------- 289 (329)
T 3sb4_A 238 ATTIPD--------FTFAQKKYLLKIKLPH--NLKTIGQRV--FSNCGRLAGTLELPA--SVTAIE-------------- 289 (329)
T ss_dssp CCEECT--------TTTTTCTTCCEEECCT--TCCEECTTT--TTTCTTCCEEEEECT--TCCEEC--------------
T ss_pred cceecH--------hhhhCCCCCCEEECCc--ccceehHHH--hhCChhccEEEEEcc--cceEEc--------------
Confidence 677764 5678889999999987 488887764 78888998 888876 455431
Q ss_pred eccccccceeeeecCCCCCCCCCCCCccEEEEecCCCCceecccchhhccccccEEE
Q 003090 707 LYRKRRDQIHIHATTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLE 763 (848)
Q Consensus 707 l~~l~~~~l~i~~c~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~ 763 (848)
...+..+++|++|++.+ ++++.++. ..+.++++|++++
T Consensus 290 -----------------~~aF~~c~~L~~l~l~~-n~i~~I~~-~aF~~~~~L~~ly 327 (329)
T 3sb4_A 290 -----------------FGAFMGCDNLRYVLATG-DKITTLGD-ELFGNGVPSKLIY 327 (329)
T ss_dssp -----------------TTTTTTCTTEEEEEECS-SCCCEECT-TTTCTTCCCCEEE
T ss_pred -----------------hhhhhCCccCCEEEeCC-CccCccch-hhhcCCcchhhhc
Confidence 23456788999999876 67888854 5677888888876
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.00 E-value=7.2e-10 Score=104.83 Aligned_cols=102 Identities=22% Similarity=0.279 Sum_probs=65.1
Q ss_pred ceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCCCCchhhhcccCcEEEccCccccCCc
Q 003090 258 QALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLPSSLSFLINLRTLRLHDRRIQGDL 337 (848)
Q Consensus 258 ~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~~ 337 (848)
+.+++++|.+..+|..+ .++|++|++++ +.+... .|..+..+++|++|+|++|.+...+
T Consensus 15 ~~l~~~~n~l~~iP~~~---~~~L~~L~Ls~--------------N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~i~ 73 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI---PTDKQRLWLNN--------------NQITKL----EPGVFDHLVNLQQLYFNSNKLTAIP 73 (174)
T ss_dssp SEEECCSSCCSSCCSCC---CTTCSEEECCS--------------SCCCCC----CTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred cEEEeCCCCCCccCCCc---CCCCcEEEeCC--------------CCcccc----CHHHhcCCcCCCEEECCCCCCCccC
Confidence 45566666666666543 25666666666 666653 3555666667777777777666655
Q ss_pred h-hhccccCCCEEEccCCCCcccChh-hccCCcccEEeccCCccc
Q 003090 338 S-LIGELSGLEILDLSESDVSEIPVS-FGRLSHLRLLDLTGCYIL 380 (848)
Q Consensus 338 ~-~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~ 380 (848)
. .+.++++|++|++++|.++.+|.. +..+++|++|++++|.+.
T Consensus 74 ~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 74 TGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred hhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence 3 346677777777777777766654 667777777777776543
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.96 E-value=1.5e-09 Score=102.20 Aligned_cols=102 Identities=21% Similarity=0.222 Sum_probs=62.0
Q ss_pred ceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCCCCchhhhcccCcEEEccCccccCCc
Q 003090 258 QALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLPSSLSFLINLRTLRLHDRRIQGDL 337 (848)
Q Consensus 258 ~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~~ 337 (848)
+++++++|.+..+|..+ .++|++|++++ |.+... .|..+..+++|++|++++|.+...+
T Consensus 12 ~~l~~s~n~l~~ip~~~---~~~l~~L~L~~--------------N~i~~~----~~~~~~~l~~L~~L~Ls~N~l~~l~ 70 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGI---PTTTQVLYLYD--------------NQITKL----EPGVFDRLTQLTRLDLDNNQLTVLP 70 (170)
T ss_dssp TEEECTTSCCSSCCSCC---CTTCSEEECCS--------------SCCCCC----CTTTTTTCTTCSEEECCSSCCCCCC
T ss_pred CEEEeCCCCcCccCccC---CCCCcEEEcCC--------------CcCCcc----ChhhhcCcccCCEEECCCCCcCccC
Confidence 45555555555555432 25566666666 556552 3455666666666666666665555
Q ss_pred -hhhccccCCCEEEccCCCCcccChh-hccCCcccEEeccCCccc
Q 003090 338 -SLIGELSGLEILDLSESDVSEIPVS-FGRLSHLRLLDLTGCYIL 380 (848)
Q Consensus 338 -~~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~ 380 (848)
..+..+++|++|++++|.++.+|.. +.++++|++|++++|.+.
T Consensus 71 ~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 71 AGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred hhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 3346667777777777777766653 666777777777776544
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.95 E-value=1.8e-09 Score=102.00 Aligned_cols=84 Identities=25% Similarity=0.447 Sum_probs=40.5
Q ss_pred ccCcEEEccCccccCCc-hhhccccCCCEEEccCCCCcccChh-hccCCcccEEeccCCccccccChhhhhccccccEEe
Q 003090 321 INLRTLRLHDRRIQGDL-SLIGELSGLEILDLSESDVSEIPVS-FGRLSHLRLLDLTGCYILELIPRGVLSRLRKLEELY 398 (848)
Q Consensus 321 ~~L~~L~L~~~~~~~~~-~~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~ 398 (848)
.+|++|++++|.+...+ ..++++++|++|++++|+++.+|.. +.++++|++|++++|.+. .+|.+.+..+++|++|+
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~ 111 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK-SIPRGAFDNLKSLTHIY 111 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEE
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccc-eeCHHHhccccCCCEEE
Confidence 44555555555444443 3445555555555555555544443 244555555555554332 33433344555555555
Q ss_pred ccccccc
Q 003090 399 MSHSFRH 405 (848)
Q Consensus 399 l~~~~~~ 405 (848)
+++|.+.
T Consensus 112 L~~N~~~ 118 (174)
T 2r9u_A 112 LYNNPWD 118 (174)
T ss_dssp CCSSCBC
T ss_pred eCCCCcc
Confidence 5555443
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.91 E-value=2.9e-09 Score=100.29 Aligned_cols=84 Identities=25% Similarity=0.434 Sum_probs=42.1
Q ss_pred ccCcEEEccCccccCCc-hhhccccCCCEEEccCCCCcccChh-hccCCcccEEeccCCccccccChhhhhccccccEEe
Q 003090 321 INLRTLRLHDRRIQGDL-SLIGELSGLEILDLSESDVSEIPVS-FGRLSHLRLLDLTGCYILELIPRGVLSRLRKLEELY 398 (848)
Q Consensus 321 ~~L~~L~L~~~~~~~~~-~~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~ 398 (848)
.+|++|++++|.+...+ ..+.++++|++|++++|+++.+|.. +..+++|++|++++|.+. .+|.+.+.++++|++|+
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~ 108 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK-SIPRGAFDNLKSLTHIW 108 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccC-EeCHHHhcCCCCCCEEE
Confidence 44555555555554443 3455555555555555555554443 345555555555554332 23333345555555555
Q ss_pred ccccccc
Q 003090 399 MSHSFRH 405 (848)
Q Consensus 399 l~~~~~~ 405 (848)
+++|.+.
T Consensus 109 L~~N~~~ 115 (170)
T 3g39_A 109 LLNNPWD 115 (170)
T ss_dssp CCSSCBC
T ss_pred eCCCCCC
Confidence 5555443
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.79 E-value=1.7e-09 Score=115.61 Aligned_cols=114 Identities=17% Similarity=0.132 Sum_probs=57.7
Q ss_pred hcccCcEEEccCccccCCc-hhh-----ccccCCCEEEccCCCCcc-----cChhhccCCcccEEeccCCccccc----c
Q 003090 319 FLINLRTLRLHDRRIQGDL-SLI-----GELSGLEILDLSESDVSE-----IPVSFGRLSHLRLLDLTGCYILEL----I 383 (848)
Q Consensus 319 ~l~~L~~L~L~~~~~~~~~-~~i-----~~l~~L~~L~l~~~~l~~-----lp~~i~~L~~L~~L~l~~~~~~~~----~ 383 (848)
.+.+|++|+|++|.+.... ..+ ....+|++|++++|.++. ++..+..+++|++|++++|.+... +
T Consensus 124 ~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L 203 (372)
T 3un9_A 124 VFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELL 203 (372)
T ss_dssp HHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHH
T ss_pred HHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHH
Confidence 3445566666665443221 222 234556666666665542 344445566666666666543221 1
Q ss_pred ChhhhhccccccEEeccccccccccccccccccCcccchhhhcccCCCcEEEeeccCCC
Q 003090 384 PRGVLSRLRKLEELYMSHSFRHWQFESESEEDSSSNAKFIELGALSRLTSLHIHIPEGK 442 (848)
Q Consensus 384 p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~ 442 (848)
+.. +...++|++|++++|.+... ...+....+...++|++|++++|.++
T Consensus 204 ~~~-L~~~~~L~~L~Ls~N~i~~~---------g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 204 AAQ-LDRNRQLQELNVAYNGAGDT---------AALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHH-GGGCSCCCEEECCSSCCCHH---------HHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred HHH-HhcCCCcCeEECCCCCCCHH---------HHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 222 44555666666666655432 11123344555566666666666554
No 144
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=98.75 E-value=7.3e-09 Score=119.74 Aligned_cols=74 Identities=16% Similarity=0.046 Sum_probs=66.4
Q ss_pred ccchhHHHHHHHHHHhc-CCccEEEEEeCCCCchhHHHHHHHHHHhhccccCc-EEEEEeccCCchhHHHHHHHhc
Q 003090 159 FKSRESTMKDIMEAMKD-ENVSITGICGMGGVGKTTLVKEIQKQAKEMKMFDD-VAMAVVSQTPSITKIQYEIAGW 232 (848)
Q Consensus 159 ~vG~~~~~~~i~~~L~~-~~~~vi~i~G~gG~GKTtla~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~l~~~i~~~ 232 (848)
.|||+++++++.++|.. ++.++|+|+||||+||||||+.+|++.++..+|+. ++|+++++.++...+...+.+.
T Consensus 130 ~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~l 205 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL 205 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 49999999999999985 56889999999999999999999999888899997 9999999999887777776653
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.60 E-value=1.2e-08 Score=109.11 Aligned_cols=163 Identities=15% Similarity=0.083 Sum_probs=116.7
Q ss_pred HHHHHHHhccCCCceeeecCCCcccC-----Ccc--cccccceeecccCcCcccC-hHHHccCCceeEEEccCccccccc
Q 003090 224 KIQYEIAGWLDLTGISLMFNDIHEVP-----DEL--ECPKLQALFLQENSPLAIP-DRFFQGMKDLQVLDLGGIRRFSFS 295 (848)
Q Consensus 224 ~l~~~i~~~~~l~~l~l~~n~l~~lp-----~~~--~~~~L~~L~l~~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~ 295 (848)
.+.+++.. .++.+++++|.+.... ..+ ..++|++|++++|.++... ..+...+++|+.|+|++
T Consensus 65 ~l~~~~~~--~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~------- 135 (372)
T 3un9_A 65 RFSAEVLS--SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQL------- 135 (372)
T ss_dssp HHHHHHHT--TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCS-------
T ss_pred HHHHHHHh--hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCC-------
Confidence 34444443 4678999999988432 222 2368999999999775432 23344567899999999
Q ss_pred ccCCCCCCCCCCCCCCCCCchh-----hhcccCcEEEccCccccCCc-----hhhccccCCCEEEccCCCCc-----ccC
Q 003090 296 VRFPFLFPPLPSSPLFLLPSSL-----SFLINLRTLRLHDRRIQGDL-----SLIGELSGLEILDLSESDVS-----EIP 360 (848)
Q Consensus 296 ~~~~~~~~~l~~~~~~~lp~~~-----~~l~~L~~L~L~~~~~~~~~-----~~i~~l~~L~~L~l~~~~l~-----~lp 360 (848)
|.+... -...+ ....+|++|+|++|.+.... ..+..+++|++|++++|.+. .++
T Consensus 136 -------n~l~~~----~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~ 204 (372)
T 3un9_A 136 -------NSLGPE----ACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLA 204 (372)
T ss_dssp -------SCCCHH----HHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHH
T ss_pred -------CCCCHH----HHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHH
Confidence 776552 12222 23578999999999765422 44578899999999999987 345
Q ss_pred hhhccCCcccEEeccCCccccc----cChhhhhccccccEEeccccccccc
Q 003090 361 VSFGRLSHLRLLDLTGCYILEL----IPRGVLSRLRKLEELYMSHSFRHWQ 407 (848)
Q Consensus 361 ~~i~~L~~L~~L~l~~~~~~~~----~p~~~l~~l~~L~~L~l~~~~~~~~ 407 (848)
..+...++|++|++++|.+... ++.. +...++|++|++++|.+...
T Consensus 205 ~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~-L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 205 AQLDRNRQLQELNVAYNGAGDTAALALARA-AREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp HHGGGCSCCCEEECCSSCCCHHHHHHHHHH-HHHCSSCCEEECTTSSCCHH
T ss_pred HHHhcCCCcCeEECCCCCCCHHHHHHHHHH-HHhCCCCCEEeccCCCCCHH
Confidence 6678889999999999876532 3333 55679999999999988654
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.55 E-value=1.3e-07 Score=100.83 Aligned_cols=102 Identities=18% Similarity=0.204 Sum_probs=53.8
Q ss_pred ceeeecC-CCcccCCcc-cccccceeeccc-CcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCCC
Q 003090 237 GISLMFN-DIHEVPDEL-ECPKLQALFLQE-NSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLL 313 (848)
Q Consensus 237 ~l~l~~n-~l~~lp~~~-~~~~L~~L~l~~-~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~l 313 (848)
.++++++ .+..+|. + .+++|++|+|++ |.+..++...|.++++|++|+|++ |.+.+. .
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~--------------N~l~~~----~ 72 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK--------------SGLRFV----A 72 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCS--------------SCCCEE----C
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCC--------------Ccccee----C
Confidence 3555555 6666666 4 555666666664 666666655556666666666666 555552 3
Q ss_pred CchhhhcccCcEEEccCccccCCchhhccccCCCEEEccCCCCc
Q 003090 314 PSSLSFLINLRTLRLHDRRIQGDLSLIGELSGLEILDLSESDVS 357 (848)
Q Consensus 314 p~~~~~l~~L~~L~L~~~~~~~~~~~i~~l~~L~~L~l~~~~l~ 357 (848)
|..|.++++|++|+|++|.+...++.+.....|++|++.+|.+.
T Consensus 73 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 73 PDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp TTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred HHHhcCCcCCCEEeCCCCccceeCHHHcccCCceEEEeeCCCcc
Confidence 33455555555555555544444422221112444444444443
No 147
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.53 E-value=6.8e-07 Score=96.42 Aligned_cols=176 Identities=14% Similarity=0.165 Sum_probs=115.5
Q ss_pred CCcccCCcc-cccccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCCCCchhhhccc
Q 003090 244 DIHEVPDEL-ECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLPSSLSFLIN 322 (848)
Q Consensus 244 ~l~~lp~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp~~~~~l~~ 322 (848)
.++.++... .-.+|+.+.+..+ +..++...|.++ +|+.+.+.. .+... -+.+|..|.+
T Consensus 123 ~i~~I~~~aF~~~~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~---------------~l~~I----~~~aF~~c~~ 181 (401)
T 4fdw_A 123 SVKSIPKDAFRNSQIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS---------------TLEQL----KEDIFYYCYN 181 (401)
T ss_dssp TCCEECTTTTTTCCCSEEECCTT-CCEECTTTTTTC-CCCEEECCT---------------TCCEE----CSSTTTTCTT
T ss_pred ccCEehHhhcccCCccEEEeCCC-ccEECHHhcCCC-CceEEEeCC---------------CccEe----hHHHhhCccc
Confidence 455555544 2236888888766 667777777774 688888764 23331 2356888888
Q ss_pred CcEEEccCccccCCchhhccccCCCEEEccCCCCcccCh-hhccCCcccEEeccCCccccccChhhhhccccccEEeccc
Q 003090 323 LRTLRLHDRRIQGDLSLIGELSGLEILDLSESDVSEIPV-SFGRLSHLRLLDLTGCYILELIPRGVLSRLRKLEELYMSH 401 (848)
Q Consensus 323 L~~L~L~~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~ 401 (848)
|+.+++..+.+...+.......+|+.+.+..+ ++.++. .+.++.+|+.+++..+ ...++...+.+ .+|+.+.+..
T Consensus 182 L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp~ 257 (401)
T 4fdw_A 182 LKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLPN 257 (401)
T ss_dssp CCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEET
T ss_pred CCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeCC
Confidence 99999988766666533333688888888744 666654 4778888999988863 46677765666 7888888844
Q ss_pred cccccccccccccccCcccchhhhcccCCCcEEEeeccCCC-----CCCCCC--ccCCCCeEEE
Q 003090 402 SFRHWQFESESEEDSSSNAKFIELGALSRLTSLHIHIPEGK-----IMPSDM--SFQNLTSFSI 458 (848)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~-----~~~~~~--~~~~L~~L~l 458 (848)
+ +... ....+.++++|+.+.+.++... .++... .+++|+.+.+
T Consensus 258 ~-i~~I-------------~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l 307 (401)
T 4fdw_A 258 G-VTNI-------------ASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEI 307 (401)
T ss_dssp T-CCEE-------------CTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECC
T ss_pred C-ccEE-------------ChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEe
Confidence 3 3222 3356788888999988876554 233332 4555555443
No 148
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=98.49 E-value=4.1e-08 Score=123.94 Aligned_cols=68 Identities=18% Similarity=0.239 Sum_probs=56.6
Q ss_pred cccccccchhHHHHHHHHHHh--cCCccEEEEEeCCCCchhHHHHHHHHHHhh-ccc-cCcEEEEEeccCCc
Q 003090 154 EGVYAFKSRESTMKDIMEAMK--DENVSITGICGMGGVGKTTLVKEIQKQAKE-MKM-FDDVAMAVVSQTPS 221 (848)
Q Consensus 154 ~~~~~~vG~~~~~~~i~~~L~--~~~~~vi~i~G~gG~GKTtla~~v~~~~~~-~~~-F~~~~wv~vs~~~~ 221 (848)
.....+|||+++++++.++|. +.+.++|+|+||||+||||||+.+|++.++ ..+ |+.+.|+++++..+
T Consensus 121 ~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 192 (1249)
T 3sfz_A 121 QRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDK 192 (1249)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCH
T ss_pred CCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCc
Confidence 345679999999999999996 467889999999999999999999987654 444 46677999998554
No 149
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=98.46 E-value=1.1e-06 Score=100.88 Aligned_cols=74 Identities=19% Similarity=0.287 Sum_probs=60.3
Q ss_pred ccccccchhHHHHHHHHHHh--cCCccEEEEEeCCCCchhHHHHHHHHHHhh-cccc-CcEEEEEeccCCchhHHHHHH
Q 003090 155 GVYAFKSRESTMKDIMEAMK--DENVSITGICGMGGVGKTTLVKEIQKQAKE-MKMF-DDVAMAVVSQTPSITKIQYEI 229 (848)
Q Consensus 155 ~~~~~vG~~~~~~~i~~~L~--~~~~~vi~i~G~gG~GKTtla~~v~~~~~~-~~~F-~~~~wv~vs~~~~~~~l~~~i 229 (848)
....+|||+.+++.+.++|. ..+.++|.|+||||+||||||+.+|++..+ ..+| +.+.|++++.. +...+...+
T Consensus 122 ~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l 199 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKL 199 (591)
T ss_dssp CCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHH
T ss_pred CCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHHH
Confidence 34679999999999999997 456789999999999999999999988766 7788 57999999875 333444443
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.44 E-value=2.5e-07 Score=98.50 Aligned_cols=90 Identities=22% Similarity=0.188 Sum_probs=46.4
Q ss_pred CCchhhhcccCcEEEccC-ccccCCc-hhhccccCCCEEEccCCCCcccCh-hhccCCcccEEeccCCccccccChhhhh
Q 003090 313 LPSSLSFLINLRTLRLHD-RRIQGDL-SLIGELSGLEILDLSESDVSEIPV-SFGRLSHLRLLDLTGCYILELIPRGVLS 389 (848)
Q Consensus 313 lp~~~~~l~~L~~L~L~~-~~~~~~~-~~i~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~~l~ 389 (848)
+|. +..+.+|++|+|++ |.+...+ ..|+.+.+|++|+|++|.++.+|. .+.+|++|++|+|++|.+. .+|...+.
T Consensus 24 ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~ 101 (347)
T 2ifg_A 24 LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQ 101 (347)
T ss_dssp TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-CCCSTTTC
T ss_pred cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccc-eeCHHHcc
Confidence 555 55555555555553 5444444 345555555555555555554433 3455555555555554432 34444333
Q ss_pred ccccccEEeccccccc
Q 003090 390 RLRKLEELYMSHSFRH 405 (848)
Q Consensus 390 ~l~~L~~L~l~~~~~~ 405 (848)
.+. |+.|++.+|.+.
T Consensus 102 ~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 102 GLS-LQELVLSGNPLH 116 (347)
T ss_dssp SCC-CCEEECCSSCCC
T ss_pred cCC-ceEEEeeCCCcc
Confidence 333 555555555543
No 151
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.40 E-value=5e-06 Score=90.00 Aligned_cols=80 Identities=20% Similarity=0.204 Sum_probs=48.7
Q ss_pred cCCCcceEEEecCchhhHhhhHHHHHhhccCcEEEEeccCCceeeeeccccccccccccccCCcCEEecCCCcccccccc
Q 003090 587 CLSNVKRSDVVDCGSILKILLSHLVQSFQNLQRLRVYSCGLLVSVFEIERVNIAKEETELFSSLEKLTLWDLPRMTDIWK 666 (848)
Q Consensus 587 ~l~~L~~L~l~~c~~l~~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~ 666 (848)
.+.+|+.+.+.+ .+ +.++...+..+.+|+.+.|.+ .++.+.. ..+..+++|+.+.+.. +++.+..
T Consensus 295 ~~~~L~~i~l~~--~i-~~I~~~aF~~c~~L~~i~lp~--~v~~I~~--------~aF~~c~~L~~i~lp~--~l~~I~~ 359 (394)
T 4fs7_A 295 GCSSLTEVKLLD--SV-KFIGEEAFESCTSLVSIDLPY--LVEEIGK--------RSFRGCTSLSNINFPL--SLRKIGA 359 (394)
T ss_dssp TCTTCCEEEECT--TC-CEECTTTTTTCTTCCEECCCT--TCCEECT--------TTTTTCTTCCEECCCT--TCCEECT
T ss_pred cccccccccccc--cc-ceechhhhcCCCCCCEEEeCC--cccEEhH--------HhccCCCCCCEEEECc--cccEehH
Confidence 456666666643 34 555544445667777777642 3555532 4566777788777753 3666655
Q ss_pred CCCccccccCccEEEee
Q 003090 667 GDTQFVSLHNLKKVRVE 683 (848)
Q Consensus 667 ~~~~l~~l~~L~~L~i~ 683 (848)
.. +.+|++|+++.+.
T Consensus 360 ~a--F~~C~~L~~i~lp 374 (394)
T 4fs7_A 360 NA--FQGCINLKKVELP 374 (394)
T ss_dssp TT--BTTCTTCCEEEEE
T ss_pred HH--hhCCCCCCEEEEC
Confidence 43 6777778877775
No 152
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.38 E-value=2.7e-06 Score=91.74 Aligned_cols=200 Identities=15% Similarity=0.120 Sum_probs=125.3
Q ss_pred hhHHHHHHHhccCCCceeeecCCCcccCCcc--cccccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCC
Q 003090 222 ITKIQYEIAGWLDLTGISLMFNDIHEVPDEL--ECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFP 299 (848)
Q Consensus 222 ~~~l~~~i~~~~~l~~l~l~~n~l~~lp~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~ 299 (848)
+..|....+....++.+.+.. .+..++... +|++|+.+++..|.+..++...|. ..+|+.+.+..
T Consensus 146 i~~I~~~aF~~~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~----------- 212 (401)
T 4fdw_A 146 LKSIGDMAFFNSTVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPV----------- 212 (401)
T ss_dssp CCEECTTTTTTCCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCT-----------
T ss_pred ccEECHHhcCCCCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCC-----------
Confidence 445555455555677788775 677777655 789999999998888888888876 57888888875
Q ss_pred CCCCCCCCCCCCCCCchhhhcccCcEEEccCccccCCc-hhhccccCCCEEEccCCCCcccC-hhhccCCcccEEeccCC
Q 003090 300 FLFPPLPSSPLFLLPSSLSFLINLRTLRLHDRRIQGDL-SLIGELSGLEILDLSESDVSEIP-VSFGRLSHLRLLDLTGC 377 (848)
Q Consensus 300 ~~~~~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~~-~~i~~l~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~ 377 (848)
+ +... -..+|.++.+|+.+.+..+ +.... ..+.+ .+|+.+.+. +.++.++ ..+.++.+|+.+++.++
T Consensus 213 ---~-l~~I----~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~ 281 (401)
T 4fdw_A 213 ---T-LKEI----GSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGS 281 (401)
T ss_dssp ---T-CCEE----CTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESS
T ss_pred ---c-hhee----hhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCc
Confidence 2 3331 2345677777888877764 33222 34444 567777773 3455554 34667777777777664
Q ss_pred ccc----cccChhhhhccccccEEeccccccccccccccccccCcccchhhhcccCCCcEEEeeccCCCCCCCCC--ccC
Q 003090 378 YIL----ELIPRGVLSRLRKLEELYMSHSFRHWQFESESEEDSSSNAKFIELGALSRLTSLHIHIPEGKIMPSDM--SFQ 451 (848)
Q Consensus 378 ~~~----~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~--~~~ 451 (848)
... ..++...+.++++|+.+.+..+ +... ....+.++.+|+.+.|..+ +..+.... .+
T Consensus 282 ~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i~~I-------------~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~- 345 (401)
T 4fdw_A 282 TFNDDPEAMIHPYCLEGCPKLARFEIPES-IRIL-------------GQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT- 345 (401)
T ss_dssp CCCCCTTCEECTTTTTTCTTCCEECCCTT-CCEE-------------CTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-
T ss_pred cccCCcccEECHHHhhCCccCCeEEeCCc-eEEE-------------hhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-
Confidence 321 2355555777777777777632 3222 2345666677777777433 44444443 45
Q ss_pred CCCeEEEEeC
Q 003090 452 NLTSFSIAIG 461 (848)
Q Consensus 452 ~L~~L~l~~~ 461 (848)
+|+.+.+..+
T Consensus 346 ~L~~l~l~~n 355 (401)
T 4fdw_A 346 GIKEVKVEGT 355 (401)
T ss_dssp CCCEEEECCS
T ss_pred CCCEEEEcCC
Confidence 6777776644
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.29 E-value=7.5e-07 Score=94.20 Aligned_cols=140 Identities=19% Similarity=0.197 Sum_probs=79.2
Q ss_pred HHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCCCCchhhhcccCcEEEccCccccCCc-hhhc--cccCCCEE
Q 003090 273 RFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLPSSLSFLINLRTLRLHDRRIQGDL-SLIG--ELSGLEIL 349 (848)
Q Consensus 273 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~~-~~i~--~l~~L~~L 349 (848)
.++..+++|+.|++++| ..+ . ++. + .+++|+.|++..|.+.... ..+. .+++|++|
T Consensus 166 ~ll~~~P~L~~L~L~g~-------------~~l-~-----l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L 224 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGT-------------NNL-S-----IGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKL 224 (362)
T ss_dssp HHHHTCTTCCEEEEECC-------------BTC-B-----CCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEE
T ss_pred HHHhcCCCCcEEEEeCC-------------CCc-e-----ecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEE
Confidence 34566777888887762 112 1 333 2 2667788887776543332 3333 67778888
Q ss_pred EccCC--C------CcccChhh--ccCCcccEEeccCCccccccChhhh--hccccccEEeccccccccccccccccccC
Q 003090 350 DLSES--D------VSEIPVSF--GRLSHLRLLDLTGCYILELIPRGVL--SRLRKLEELYMSHSFRHWQFESESEEDSS 417 (848)
Q Consensus 350 ~l~~~--~------l~~lp~~i--~~L~~L~~L~l~~~~~~~~~p~~~l--~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 417 (848)
+|+.+ . +..+...+ ..+++|++|++++|......+..+. ..+++|++|+++.|.+... .
T Consensus 225 ~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~---------G 295 (362)
T 2ra8_A 225 VLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDE---------G 295 (362)
T ss_dssp EEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHH---------H
T ss_pred EEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChH---------H
Confidence 77531 1 21222222 3467888888877665433333311 2467788888877766532 1
Q ss_pred cccchhhhcccCCCcEEEeeccCCC
Q 003090 418 SNAKFIELGALSRLTSLHIHIPEGK 442 (848)
Q Consensus 418 ~~~~~~~L~~l~~L~~L~l~~~~~~ 442 (848)
..+....+.++++|+.|+++.|.++
T Consensus 296 ~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 296 ARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp HHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred HHHHHhhcccCCcceEEECCCCcCC
Confidence 1123444566778888888777544
No 154
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.24 E-value=8.5e-06 Score=88.15 Aligned_cols=100 Identities=12% Similarity=0.062 Sum_probs=53.1
Q ss_pred ccCCCccEEecccccccccccccccccccCCCcceEEEecCchhhHhhhHHHHHhhccCcEEEEeccCCceeeeeccccc
Q 003090 559 VTLHKLEWLFIRENQNFVEICHGQLPAGCLSNVKRSDVVDCGSILKILLSHLVQSFQNLQRLRVYSCGLLVSVFEIERVN 638 (848)
Q Consensus 559 ~~~p~L~~L~l~~~~~L~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~ 638 (848)
..+.+|+.+.+.+. ++.+ +......+.+|+.+.+.+ .+ +.+....+..+.+|+.+.+.. +++.+..
T Consensus 294 ~~~~~L~~i~l~~~--i~~I--~~~aF~~c~~L~~i~lp~--~v-~~I~~~aF~~c~~L~~i~lp~--~l~~I~~----- 359 (394)
T 4fs7_A 294 YGCSSLTEVKLLDS--VKFI--GEEAFESCTSLVSIDLPY--LV-EEIGKRSFRGCTSLSNINFPL--SLRKIGA----- 359 (394)
T ss_dssp TTCTTCCEEEECTT--CCEE--CTTTTTTCTTCCEECCCT--TC-CEECTTTTTTCTTCCEECCCT--TCCEECT-----
T ss_pred cccccccccccccc--ccee--chhhhcCCCCCCEEEeCC--cc-cEEhHHhccCCCCCCEEEECc--cccEehH-----
Confidence 34456666665432 3332 111222456667666643 34 555544445667777777753 2555532
Q ss_pred cccccccccCCcCEEecCCCccccccccCCCccccccCccEE
Q 003090 639 IAKEETELFSSLEKLTLWDLPRMTDIWKGDTQFVSLHNLKKV 680 (848)
Q Consensus 639 ~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~l~~l~~L~~L 680 (848)
..+..+++|+.+++.. +++.+.. .+.++++|+.+
T Consensus 360 ---~aF~~C~~L~~i~lp~--~~~~~~~---~F~~c~~L~~I 393 (394)
T 4fs7_A 360 ---NAFQGCINLKKVELPK--RLEQYRY---DFEDTTKFKWI 393 (394)
T ss_dssp ---TTBTTCTTCCEEEEEG--GGGGGGG---GBCTTCEEEEE
T ss_pred ---HHhhCCCCCCEEEECC--CCEEhhh---eecCCCCCcEE
Confidence 5667778888887753 3443321 24555555543
No 155
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.13 E-value=1.3e-06 Score=80.74 Aligned_cols=68 Identities=21% Similarity=0.270 Sum_probs=36.4
Q ss_pred cCCCcceEEEecCchhhHhhhHHHHHh----hccCcEEEEeccCCceeeeeccccccccccccccCCcCEEecCCCcccc
Q 003090 587 CLSNVKRSDVVDCGSILKILLSHLVQS----FQNLQRLRVYSCGLLVSVFEIERVNIAKEETELFSSLEKLTLWDLPRMT 662 (848)
Q Consensus 587 ~l~~L~~L~l~~c~~l~~~l~~~~~~~----l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~ 662 (848)
.+++|++|++++|..+ ++-.-..+.. .++|++|+|++|+.+++--- ..+..+++|++|+|++|+.++
T Consensus 83 ~~~~L~~L~L~~C~~I-tD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl--------~~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 83 GLQYVEKIRLCKCHYI-EDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI--------IALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp TCSCCCEEEEESCTTC-CHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH--------HHGGGCTTCCEEEEESCTTCC
T ss_pred CCCCCCEEEeCCCCcc-CHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH--------HHHhcCCCCCEEECCCCCCCC
Confidence 4566666666666555 2221111122 24566777776666654311 234456677777777776666
Q ss_pred c
Q 003090 663 D 663 (848)
Q Consensus 663 ~ 663 (848)
.
T Consensus 154 d 154 (176)
T 3e4g_A 154 E 154 (176)
T ss_dssp C
T ss_pred c
Confidence 4
No 156
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.10 E-value=2.7e-06 Score=78.56 Aligned_cols=91 Identities=11% Similarity=0.090 Sum_probs=44.4
Q ss_pred CCcEEEEecCCCceeecccccccccccCCCccEEecccccccccccccccccc--cCCCcceEEEecCchhhHhhhHHHH
Q 003090 534 ELMFLVIFRCNEMKYLLNSLERTLRVTLHKLEWLFIRENQNFVEICHGQLPAG--CLSNVKRSDVVDCGSILKILLSHLV 611 (848)
Q Consensus 534 ~L~~L~l~~~~~l~~l~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~--~l~~L~~L~l~~c~~l~~~l~~~~~ 611 (848)
+|+.|++++|. ++. .++.....+++|++|+|++|..+++.....+... ..++|++|+|++|+.+ ++-.-..+
T Consensus 62 ~L~~LDLs~~~-Itd----~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~I-TD~Gl~~L 135 (176)
T 3e4g_A 62 KIQAIDATDSC-IMS----IGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNV-TDKGIIAL 135 (176)
T ss_dssp CEEEEEEESCC-CCG----GGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTC-CHHHHHHG
T ss_pred eEeEEeCcCCC-ccH----HHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcC-CHHHHHHH
Confidence 45666666664 322 1223334556666666666655554322222211 1235666666666655 33221122
Q ss_pred HhhccCcEEEEeccCCcee
Q 003090 612 QSFQNLQRLRVYSCGLLVS 630 (848)
Q Consensus 612 ~~l~~L~~L~l~~c~~l~~ 630 (848)
..+++|++|+|++|+.++.
T Consensus 136 ~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 136 HHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp GGCTTCCEEEEESCTTCCC
T ss_pred hcCCCCCEEECCCCCCCCc
Confidence 4456666666666665554
No 157
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.06 E-value=3.9e-06 Score=88.69 Aligned_cols=132 Identities=19% Similarity=0.256 Sum_probs=75.3
Q ss_pred cccccceeecccCcCcccChHHHccCCceeEEEccCcccccccccCCCCCCCCCCCCCCCCCchhh--hcccCcEEEccC
Q 003090 253 ECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLPSSLS--FLINLRTLRLHD 330 (848)
Q Consensus 253 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp~~~~--~l~~L~~L~L~~ 330 (848)
.+++|+.|.+++|....++. + .+++|+.|++.. +.+... ....+. .+++|++|+|+.
T Consensus 170 ~~P~L~~L~L~g~~~l~l~~--~-~~~~L~~L~L~~--------------~~l~~~----~l~~l~~~~lp~L~~L~L~~ 228 (362)
T 2ra8_A 170 AMPLLNNLKIKGTNNLSIGK--K-PRPNLKSLEIIS--------------GGLPDS----VVEDILGSDLPNLEKLVLYV 228 (362)
T ss_dssp TCTTCCEEEEECCBTCBCCS--C-BCTTCSEEEEEC--------------SBCCHH----HHHHHHHSBCTTCCEEEEEC
T ss_pred cCCCCcEEEEeCCCCceecc--c-cCCCCcEEEEec--------------CCCChH----HHHHHHHccCCCCcEEEEec
Confidence 55777777777663223433 2 367777777776 443321 112233 567777777753
Q ss_pred c--cccCC--c----hhh--ccccCCCEEEccCCCCc-ccChhh---ccCCcccEEeccCCccccc----cChhhhhccc
Q 003090 331 R--RIQGD--L----SLI--GELSGLEILDLSESDVS-EIPVSF---GRLSHLRLLDLTGCYILEL----IPRGVLSRLR 392 (848)
Q Consensus 331 ~--~~~~~--~----~~i--~~l~~L~~L~l~~~~l~-~lp~~i---~~L~~L~~L~l~~~~~~~~----~p~~~l~~l~ 392 (848)
+ ..... . ..+ ..+++|++|++++|.+. ..+..+ ..+++|++|+++.|..... ++.+ +.+++
T Consensus 229 ~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~-L~~l~ 307 (362)
T 2ra8_A 229 GVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDH-VDKIK 307 (362)
T ss_dssp BCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTT-HHHHT
T ss_pred cccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhh-cccCC
Confidence 1 11111 1 112 34678888888887765 222222 2467888888887654432 3333 45678
Q ss_pred cccEEecccccccc
Q 003090 393 KLEELYMSHSFRHW 406 (848)
Q Consensus 393 ~L~~L~l~~~~~~~ 406 (848)
+|+.|++++|.+..
T Consensus 308 ~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 308 HLKFINMKYNYLSD 321 (362)
T ss_dssp TCSEEECCSBBCCH
T ss_pred cceEEECCCCcCCH
Confidence 88888888887654
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.83 E-value=1e-05 Score=76.88 Aligned_cols=118 Identities=11% Similarity=0.039 Sum_probs=84.1
Q ss_pred chhhhcccCcEEEccCc-cccCC-----chhhccccCCCEEEccCCCCc-----ccChhhccCCcccEEeccCCccccc-
Q 003090 315 SSLSFLINLRTLRLHDR-RIQGD-----LSLIGELSGLEILDLSESDVS-----EIPVSFGRLSHLRLLDLTGCYILEL- 382 (848)
Q Consensus 315 ~~~~~l~~L~~L~L~~~-~~~~~-----~~~i~~l~~L~~L~l~~~~l~-----~lp~~i~~L~~L~~L~l~~~~~~~~- 382 (848)
..+...++|++|+|++| .+... ...+...++|++|++++|.+. .+...+...++|++|++++|.+...
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 34566788999999998 65442 145667789999999999887 3455667778899999999865432
Q ss_pred ---cChhhhhccccccEEec--cccccccccccccccccCcccchhhhcccCCCcEEEeeccCCC
Q 003090 383 ---IPRGVLSRLRKLEELYM--SHSFRHWQFESESEEDSSSNAKFIELGALSRLTSLHIHIPEGK 442 (848)
Q Consensus 383 ---~p~~~l~~l~~L~~L~l--~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~ 442 (848)
+... +...++|++|++ ++|.+... ...+....+...++|++|++++|.+.
T Consensus 110 ~~~l~~~-L~~n~~L~~L~L~~~~N~i~~~---------g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 110 ILALVEA-LQSNTSLIELRIDNQSQPLGNN---------VEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHG-GGGCSSCCEEECCCCSSCCCHH---------HHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHH-HHhCCCceEEEecCCCCCCCHH---------HHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3333 566778999999 77877543 12234456677788999999887653
No 159
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.77 E-value=8.9e-06 Score=77.29 Aligned_cols=117 Identities=13% Similarity=0.116 Sum_probs=79.6
Q ss_pred HHccCCceeEEEccCcccccccccCCCCCC-CCCCCCCCCCCchhhhcccCcEEEccCccccCCc-----hhhccccCCC
Q 003090 274 FFQGMKDLQVLDLGGIRRFSFSVRFPFLFP-PLPSSPLFLLPSSLSFLINLRTLRLHDRRIQGDL-----SLIGELSGLE 347 (848)
Q Consensus 274 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~-~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~~-----~~i~~l~~L~ 347 (848)
++...+.|+.|+|++ + .+.......+...+...++|++|+|++|.+...- ..+...++|+
T Consensus 31 ~l~~~~~L~~L~L~~--------------n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~ 96 (185)
T 1io0_A 31 IQNNDPDLEEVNLNN--------------IMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLK 96 (185)
T ss_dssp HHTTCTTCCEEECTT--------------CTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCC
T ss_pred HHhcCCCCCEEEecC--------------CCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcC
Confidence 356677888888888 5 5543211113344556678888888888654421 4455667899
Q ss_pred EEEccCCCCcc-----cChhhccCCcccEEec--cCCccccc----cChhhhhccccccEEeccccccc
Q 003090 348 ILDLSESDVSE-----IPVSFGRLSHLRLLDL--TGCYILEL----IPRGVLSRLRKLEELYMSHSFRH 405 (848)
Q Consensus 348 ~L~l~~~~l~~-----lp~~i~~L~~L~~L~l--~~~~~~~~----~p~~~l~~l~~L~~L~l~~~~~~ 405 (848)
+|++++|.+.. +...+...++|++|++ ++|.+... +... +...++|++|++++|.+.
T Consensus 97 ~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~-L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 97 SLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANM-LEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp EEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHH-HHHCSSCCEEECCCSSHH
T ss_pred EEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHH-HHhCCCcCEEeccCCCCC
Confidence 99999998873 5667777888999999 66655432 2233 556688999999888764
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.64 E-value=0.0011 Score=71.41 Aligned_cols=31 Identities=13% Similarity=0.222 Sum_probs=16.1
Q ss_pred cceeecccCcCcccChHHHccCCceeEEEccC
Q 003090 257 LQALFLQENSPLAIPDRFFQGMKDLQVLDLGG 288 (848)
Q Consensus 257 L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~ 288 (848)
|+.+.+..+ +..+.+..|.++.+|+.+.+..
T Consensus 66 L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~ 96 (394)
T 4gt6_A 66 LTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQD 96 (394)
T ss_dssp CCEEEECTT-CCEECTTTTTTCTTCCEEEEGG
T ss_pred CEEEEECCC-eeEEhHHHhhCCccCceEeecC
Confidence 444444432 4445555555666666665554
No 161
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.57 E-value=0.00011 Score=73.46 Aligned_cols=37 Identities=19% Similarity=0.037 Sum_probs=22.3
Q ss_pred CCccEEEEEeCCCCchhHHHHHHHHHHhhccccCcEEEE
Q 003090 176 ENVSITGICGMGGVGKTTLVKEIQKQAKEMKMFDDVAMA 214 (848)
Q Consensus 176 ~~~~vi~i~G~gG~GKTtla~~v~~~~~~~~~F~~~~wv 214 (848)
.+.--|.|-++....|+.+.+.|-+.. ...|..+.|-
T Consensus 22 ~~w~kv~I~~g~ky~k~~ll~~i~~~~--~~~f~p~~~~ 58 (267)
T 3rw6_A 22 KNWFKITIPYGRKYDKAWLLSMIQSKC--SVPFTPIEFH 58 (267)
T ss_dssp -CCEEEEETTGGGSCHHHHHHHHHHTC--SSCCCCEEEE
T ss_pred CCeEEEEecCccccCHHHHHHHHHHhC--CCCcEeEEEE
Confidence 344556677777777888777775543 3446555554
No 162
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.52 E-value=0.0033 Score=67.65 Aligned_cols=114 Identities=18% Similarity=0.222 Sum_probs=75.3
Q ss_pred CcccChHHHccCC-ceeEEEccCcccccccccCCCCCCCCCCCCCCCCCchhhhcccCcEEEccCcccc--CCc--hhhc
Q 003090 267 PLAIPDRFFQGMK-DLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLPSSLSFLINLRTLRLHDRRIQ--GDL--SLIG 341 (848)
Q Consensus 267 ~~~~~~~~~~~~~-~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~--~~~--~~i~ 341 (848)
...+.+..|.+++ .|+.+.+.. .++.. -..+|.++.+|+.+.+..+... ..+ ..+.
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~---------------svt~I----g~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~ 111 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPD---------------TVTEI----GSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFM 111 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECT---------------TCCEE----CTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTT
T ss_pred eeEcCHhhccCCCCcCEEEEECC---------------CeeEE----hHHHhhCCccCceEeecCCCCCeeeEechhhch
Confidence 4566777777775 588888765 23332 2356888999999998776321 112 5667
Q ss_pred cccCCCEEEccCCCCcccCh-hhccCCcccEEeccCCccccccChhhhhccccccEEecccc
Q 003090 342 ELSGLEILDLSESDVSEIPV-SFGRLSHLRLLDLTGCYILELIPRGVLSRLRKLEELYMSHS 402 (848)
Q Consensus 342 ~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~ 402 (848)
.+.+|+.+.+..+ ++.++. .+..+.+|+.+.+... ...++...+..+.+|+.+.+..+
T Consensus 112 ~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~~~ 170 (394)
T 4gt6_A 112 FCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEG--VTSVADGMFSYCYSLHTVTLPDS 170 (394)
T ss_dssp TCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT
T ss_pred hcccceeeccCCc-cceehhhhhhhhcccccccccce--eeeecccceecccccccccccce
Confidence 7788887776553 555543 4677888888888652 34566665778888888877654
No 163
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.52 E-value=5.8e-05 Score=75.38 Aligned_cols=65 Identities=20% Similarity=0.236 Sum_probs=39.2
Q ss_pred ccCCceeEEEccCcccccccccCCCCCCCCCCCCCCCCCchhhhcccCcEEEccCccccCCchhhcccc--CCCEEEccC
Q 003090 276 QGMKDLQVLDLGGIRRFSFSVRFPFLFPPLPSSPLFLLPSSLSFLINLRTLRLHDRRIQGDLSLIGELS--GLEILDLSE 353 (848)
Q Consensus 276 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~~i~~l~--~L~~L~l~~ 353 (848)
.++++|+.|+|++ |.+.+. ..+|..+..+++|++|+|++|.+... ..+..+. +|++|++++
T Consensus 167 ~~l~~L~~L~Ls~--------------N~l~~l--~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~ 229 (267)
T 3rw6_A 167 ENIPELLSLNLSN--------------NRLYRL--DDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDG 229 (267)
T ss_dssp HHCTTCCEEECTT--------------SCCCCC--GGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTT
T ss_pred hhCCCCCEEECCC--------------CCCCCC--ccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccC
Confidence 5677888888888 666651 00445566777777777777755443 2233333 666666666
Q ss_pred CCCc
Q 003090 354 SDVS 357 (848)
Q Consensus 354 ~~l~ 357 (848)
|.+.
T Consensus 230 Npl~ 233 (267)
T 3rw6_A 230 NSLC 233 (267)
T ss_dssp STTG
T ss_pred CcCc
Confidence 6554
No 164
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=96.70 E-value=0.0015 Score=70.88 Aligned_cols=77 Identities=19% Similarity=0.134 Sum_probs=55.2
Q ss_pred ccccchhHHHHHHHHHH-h----c--CCccEEEE--EeCCCCchhHHHHHHHHHHhhcc---ccC-cEEEEEeccCCchh
Q 003090 157 YAFKSRESTMKDIMEAM-K----D--ENVSITGI--CGMGGVGKTTLVKEIQKQAKEMK---MFD-DVAMAVVSQTPSIT 223 (848)
Q Consensus 157 ~~~vG~~~~~~~i~~~L-~----~--~~~~vi~i--~G~gG~GKTtla~~v~~~~~~~~---~F~-~~~wv~vs~~~~~~ 223 (848)
..++||+++++.+.+++ . . .....+-| +|++|+||||+++.+++...... .|+ ..+|+......+..
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLY 101 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHH
Confidence 67999999999999998 4 2 23445666 99999999999999998754321 122 24555554666677
Q ss_pred HHHHHHHhcc
Q 003090 224 KIQYEIAGWL 233 (848)
Q Consensus 224 ~l~~~i~~~~ 233 (848)
.+...+...+
T Consensus 102 ~~~~~l~~~l 111 (412)
T 1w5s_A 102 TILSLIVRQT 111 (412)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7777777655
No 165
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.63 E-value=0.0024 Score=67.35 Aligned_cols=55 Identities=16% Similarity=0.262 Sum_probs=44.6
Q ss_pred ccccccchhHHHHHHHHHHhcCCccEEEEEeCCCCchhHHHHHHHHHHhhccccCcEEEEEecc
Q 003090 155 GVYAFKSRESTMKDIMEAMKDENVSITGICGMGGVGKTTLVKEIQKQAKEMKMFDDVAMAVVSQ 218 (848)
Q Consensus 155 ~~~~~vG~~~~~~~i~~~L~~~~~~vi~i~G~gG~GKTtla~~v~~~~~~~~~F~~~~wv~vs~ 218 (848)
....++||+++.+.+.+++... .++.|+|..|+|||||++.+.+.. + .+|+....
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~ 64 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRE 64 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHH
T ss_pred ChHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeec
Confidence 3467999999999999998754 789999999999999999998753 2 55665543
No 166
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.53 E-value=0.0032 Score=67.50 Aligned_cols=77 Identities=18% Similarity=0.197 Sum_probs=55.2
Q ss_pred ccccchhHHHHHHHHHHh----cCCccEEEEEeCCCCchhHHHHHHHHHHhhccc-cCcEEEEEeccCCchhHHHHHHHh
Q 003090 157 YAFKSRESTMKDIMEAMK----DENVSITGICGMGGVGKTTLVKEIQKQAKEMKM-FDDVAMAVVSQTPSITKIQYEIAG 231 (848)
Q Consensus 157 ~~~vG~~~~~~~i~~~L~----~~~~~vi~i~G~gG~GKTtla~~v~~~~~~~~~-F~~~~wv~vs~~~~~~~l~~~i~~ 231 (848)
..++||+++++.+.+++. ......+.|+|..|+||||+++.+.+....... -...+|+......+...+...+..
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~ 99 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLE 99 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTT
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHH
Confidence 679999999999999987 344568999999999999999999986532210 123455554454555566666655
Q ss_pred cc
Q 003090 232 WL 233 (848)
Q Consensus 232 ~~ 233 (848)
.+
T Consensus 100 ~l 101 (386)
T 2qby_A 100 SL 101 (386)
T ss_dssp TT
T ss_pred Hh
Confidence 44
No 167
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.45 E-value=0.0098 Score=57.81 Aligned_cols=48 Identities=13% Similarity=0.218 Sum_probs=41.7
Q ss_pred ccccccchhHHHHHHHHHHhcCCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 155 GVYAFKSRESTMKDIMEAMKDENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 155 ~~~~~vG~~~~~~~i~~~L~~~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
....++|+++.++.+.+++.......+-++|..|+|||++|+.+.+..
T Consensus 15 ~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 15 TLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp SGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CHHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 346789999999999999987665568999999999999999998764
No 168
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.44 E-value=0.0039 Score=59.09 Aligned_cols=47 Identities=17% Similarity=0.362 Sum_probs=41.3
Q ss_pred cccccchhHHHHHHHHHHhcCCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 156 VYAFKSRESTMKDIMEAMKDENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 156 ~~~~vG~~~~~~~i~~~L~~~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
...++|+++.++.+.+++.......+-++|..|+|||++|+.+.+..
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 21 LDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999987666678899999999999999998765
No 169
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.43 E-value=0.0043 Score=66.46 Aligned_cols=77 Identities=23% Similarity=0.216 Sum_probs=54.1
Q ss_pred ccccchhHHHHHHHHHHh----cCCccEEEEEeCCCCchhHHHHHHHHHHhhcc----c--cCcEEEEEeccCC-chhHH
Q 003090 157 YAFKSRESTMKDIMEAMK----DENVSITGICGMGGVGKTTLVKEIQKQAKEMK----M--FDDVAMAVVSQTP-SITKI 225 (848)
Q Consensus 157 ~~~vG~~~~~~~i~~~L~----~~~~~vi~i~G~gG~GKTtla~~v~~~~~~~~----~--F~~~~wv~vs~~~-~~~~l 225 (848)
..++||+++++.+.+++. ......+-|+|.+|+||||+|+.+.+...... . ....+|+..+... +...+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 679999999999998876 33456899999999999999999998653221 1 2235566554444 55556
Q ss_pred HHHHHhcc
Q 003090 226 QYEIAGWL 233 (848)
Q Consensus 226 ~~~i~~~~ 233 (848)
...+...+
T Consensus 100 ~~~l~~~l 107 (384)
T 2qby_B 100 LSSLAGKL 107 (384)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 56655443
No 170
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.40 E-value=0.26 Score=52.23 Aligned_cols=79 Identities=10% Similarity=0.079 Sum_probs=39.3
Q ss_pred hhhcccCcEEEccCccccCCc-hhhccccCCCEEEccCCCCcccChh-hccCCcccEEeccCCccccccChhhhhccccc
Q 003090 317 LSFLINLRTLRLHDRRIQGDL-SLIGELSGLEILDLSESDVSEIPVS-FGRLSHLRLLDLTGCYILELIPRGVLSRLRKL 394 (848)
Q Consensus 317 ~~~l~~L~~L~L~~~~~~~~~-~~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~~l~~l~~L 394 (848)
+....+|+.+.+... +.... ..+.++.+|+.+++..+ ++.++.. +.++ +|..+.+.. .+..++...+.. .+|
T Consensus 42 ~~~~~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~--~l~~I~~~aF~~-~~L 115 (379)
T 4h09_A 42 YKDRDRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGME--RVKKFGDYVFQG-TDL 115 (379)
T ss_dssp GGGGGGCSEEEECTT-EEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECT--TCCEECTTTTTT-CCC
T ss_pred cccccCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCc--eeeEeccceecc-CCc
Confidence 445556666666544 33332 45666677777776543 4444432 3333 455555543 233444443333 356
Q ss_pred cEEeccc
Q 003090 395 EELYMSH 401 (848)
Q Consensus 395 ~~L~l~~ 401 (848)
+.+.+..
T Consensus 116 ~~i~lp~ 122 (379)
T 4h09_A 116 DDFEFPG 122 (379)
T ss_dssp SEEECCT
T ss_pred ccccCCC
Confidence 6555543
No 171
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=96.35 E-value=0.0074 Score=63.76 Aligned_cols=55 Identities=16% Similarity=0.227 Sum_probs=44.4
Q ss_pred ccccccchhHHHHHHHHHHhcCCccEEEEEeCCCCchhHHHHHHHHHHhhccccCcEEEEEecc
Q 003090 155 GVYAFKSRESTMKDIMEAMKDENVSITGICGMGGVGKTTLVKEIQKQAKEMKMFDDVAMAVVSQ 218 (848)
Q Consensus 155 ~~~~~vG~~~~~~~i~~~L~~~~~~vi~i~G~gG~GKTtla~~v~~~~~~~~~F~~~~wv~vs~ 218 (848)
....++||+++.+.+.+ +.. .++.|+|..|+|||||++.+.+... ...+|+....
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~-----~~~~~~~~~~ 65 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELN-----LPYIYLDLRK 65 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHT-----CCEEEEEGGG
T ss_pred CHHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcC-----CCEEEEEchh
Confidence 34679999999999999 755 6999999999999999999987652 1256776654
No 172
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.10 E-value=0.0058 Score=57.55 Aligned_cols=47 Identities=17% Similarity=0.310 Sum_probs=41.2
Q ss_pred cccccchhHHHHHHHHHHhcCCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 156 VYAFKSRESTMKDIMEAMKDENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 156 ~~~~vG~~~~~~~i~~~L~~~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
...++|+++.++.+.+++.......+-++|..|+||||+|+.+.+..
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 21 LDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred cchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999987666677899999999999999998765
No 173
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.82 E-value=0.014 Score=62.50 Aligned_cols=77 Identities=16% Similarity=0.245 Sum_probs=55.1
Q ss_pred ccccchhHHHHHHHHHHh----cCCccEEEEEeCCCCchhHHHHHHHHHHhhcc----ccCcEEEEEeccCCchhHHHHH
Q 003090 157 YAFKSRESTMKDIMEAMK----DENVSITGICGMGGVGKTTLVKEIQKQAKEMK----MFDDVAMAVVSQTPSITKIQYE 228 (848)
Q Consensus 157 ~~~vG~~~~~~~i~~~L~----~~~~~vi~i~G~gG~GKTtla~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~l~~~ 228 (848)
..++||+++++.+..++. ......+-|+|..|+||||+|+.+.+...... .--..+|+......+...+...
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 98 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASA 98 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHH
Confidence 679999999999999985 24556889999999999999999997653210 0112455555555565666666
Q ss_pred HHhcc
Q 003090 229 IAGWL 233 (848)
Q Consensus 229 i~~~~ 233 (848)
+...+
T Consensus 99 l~~~l 103 (387)
T 2v1u_A 99 IAEAV 103 (387)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 66555
No 174
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.81 E-value=0.021 Score=61.10 Aligned_cols=76 Identities=18% Similarity=0.149 Sum_probs=54.7
Q ss_pred ccccchhHHHHHHHHHHhc----CCcc--EEEEEeCCCCchhHHHHHHHHHHhhccccCcEEEEEeccCCchhHHHHHHH
Q 003090 157 YAFKSRESTMKDIMEAMKD----ENVS--ITGICGMGGVGKTTLVKEIQKQAKEMKMFDDVAMAVVSQTPSITKIQYEIA 230 (848)
Q Consensus 157 ~~~vG~~~~~~~i~~~L~~----~~~~--vi~i~G~gG~GKTtla~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~ 230 (848)
..++||+++++.+..++.. .... .+.|+|..|+||||+++.+.+....... -..+++..+...+...+...+.
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~l~ 95 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTT-ARFVYINGFIYRNFTAIIGEIA 95 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCC-CEEEEEETTTCCSHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcC-eeEEEEeCccCCCHHHHHHHHH
Confidence 5799999999999999873 3334 8999999999999999999977532211 1244555455555566667666
Q ss_pred hcc
Q 003090 231 GWL 233 (848)
Q Consensus 231 ~~~ 233 (848)
..+
T Consensus 96 ~~l 98 (389)
T 1fnn_A 96 RSL 98 (389)
T ss_dssp HHT
T ss_pred HHh
Confidence 554
No 175
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.71 E-value=0.014 Score=57.59 Aligned_cols=49 Identities=16% Similarity=0.223 Sum_probs=41.2
Q ss_pred ccccccchhHHHHHHHHHHhcCC-ccEEEEEeCCCCchhHHHHHHHHHHh
Q 003090 155 GVYAFKSRESTMKDIMEAMKDEN-VSITGICGMGGVGKTTLVKEIQKQAK 203 (848)
Q Consensus 155 ~~~~~vG~~~~~~~i~~~L~~~~-~~vi~i~G~gG~GKTtla~~v~~~~~ 203 (848)
....++|++..++.+..++.... ...+-|+|..|+||||+|+.+.+...
T Consensus 21 ~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 21 TFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred cHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34679999999999999998544 35788999999999999999987654
No 176
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.39 E-value=0.023 Score=58.93 Aligned_cols=50 Identities=26% Similarity=0.355 Sum_probs=42.7
Q ss_pred CcccccccchhHHHHHHHHHHhcCCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 153 SEGVYAFKSRESTMKDIMEAMKDENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 153 ~~~~~~~vG~~~~~~~i~~~L~~~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
|.....++|++..++.+.+++.......+-++|..|+||||+|+.+.+..
T Consensus 17 p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 17 PQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp CSSGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCHHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 33446799999999999999987666668899999999999999998764
No 177
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=94.83 E-value=0.034 Score=57.79 Aligned_cols=48 Identities=21% Similarity=0.254 Sum_probs=41.9
Q ss_pred ccccccchhHHHHHHHHHHhcCCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 155 GVYAFKSRESTMKDIMEAMKDENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 155 ~~~~~vG~~~~~~~i~~~L~~~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
....++|+++.++.+..++.......+-++|..|+||||+|+.+.+..
T Consensus 23 ~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l 70 (327)
T 1iqp_A 23 RLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALAREL 70 (327)
T ss_dssp STTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CHHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 346799999999999999987766668999999999999999999764
No 178
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.63 E-value=0.033 Score=48.66 Aligned_cols=52 Identities=19% Similarity=0.306 Sum_probs=46.3
Q ss_pred CceeeecCCCc--ccCCcccccccceeecccCcCcccChHHHccCCceeEEEccC
Q 003090 236 TGISLMFNDIH--EVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLQVLDLGG 288 (848)
Q Consensus 236 ~~l~l~~n~l~--~lp~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~ 288 (848)
+.++.+++.++ .+|..+. ++|++|+|++|.+..++..+|..+++|++|+|.+
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp-~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 64 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP-VDTTELVLTGNNLTALPPGLLDALPALRTAHLGA 64 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC-TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCS
T ss_pred CEEEeCCCCCccccCCCCCC-cCCCEEECCCCcCCccChhhhhhccccCEEEecC
Confidence 45788889998 8997653 4699999999999999999999999999999999
No 179
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=94.58 E-value=0.064 Score=54.74 Aligned_cols=78 Identities=10% Similarity=0.053 Sum_probs=54.3
Q ss_pred ccccchhHHHHHHHHHHh----cCCccEEEEEeCCCCchhHHHHHHHHHHhhccc---cCcEEEEEec--cCCchhHHHH
Q 003090 157 YAFKSRESTMKDIMEAMK----DENVSITGICGMGGVGKTTLVKEIQKQAKEMKM---FDDVAMAVVS--QTPSITKIQY 227 (848)
Q Consensus 157 ~~~vG~~~~~~~i~~~L~----~~~~~vi~i~G~gG~GKTtla~~v~~~~~~~~~---F~~~~wv~vs--~~~~~~~l~~ 227 (848)
..+.|||++++.+...|. ......+-|+|..|.|||++++.|.+....... .....++.+. ...+...+..
T Consensus 20 ~~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~ 99 (318)
T 3te6_A 20 ELLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYE 99 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHH
Confidence 458999999999998876 456678899999999999999999987743221 1123344444 3345556677
Q ss_pred HHHhccC
Q 003090 228 EIAGWLD 234 (848)
Q Consensus 228 ~i~~~~~ 234 (848)
.|.+++.
T Consensus 100 ~I~~~L~ 106 (318)
T 3te6_A 100 KIWFAIS 106 (318)
T ss_dssp HHHHHHS
T ss_pred HHHHHhc
Confidence 7776663
No 180
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.26 E-value=0.044 Score=49.01 Aligned_cols=44 Identities=11% Similarity=0.262 Sum_probs=35.0
Q ss_pred cccchhHHHHHHHHHHh---cCCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 158 AFKSRESTMKDIMEAMK---DENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 158 ~~vG~~~~~~~i~~~L~---~~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
.++|....++++.+.+. ..+. -|-|+|-.|+|||++|+.+++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~-~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDI-AVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCS-CEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCC-CEEEECCCCCCHHHHHHHHHHhC
Confidence 57899999999998886 3333 45699999999999999998754
No 181
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=93.96 E-value=0.11 Score=55.15 Aligned_cols=81 Identities=15% Similarity=0.188 Sum_probs=35.8
Q ss_pred hhhcccCcEEEccCccccCCc-hhhccccCCCEEEccCCCCcccCh-hhccCCcccEEeccCCccccccChhhhhccccc
Q 003090 317 LSFLINLRTLRLHDRRIQGDL-SLIGELSGLEILDLSESDVSEIPV-SFGRLSHLRLLDLTGCYILELIPRGVLSRLRKL 394 (848)
Q Consensus 317 ~~~l~~L~~L~L~~~~~~~~~-~~i~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~~l~~l~~L 394 (848)
+..+.+|+.+.+..+ +.... ..+.++.+|+.+.+..+ +..++. .+..+.+|+.+.+.++ ....++...+.++.+|
T Consensus 236 f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~-~i~~I~~~aF~~c~~L 312 (379)
T 4h09_A 236 FYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNS-AIETLEPRVFMDCVKL 312 (379)
T ss_dssp TTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCT-TCCEECTTTTTTCTTC
T ss_pred ccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccccccccccc-ccceehhhhhcCCCCC
Confidence 444455555555443 22111 33444555555555332 333332 2444555555555442 2233444445555555
Q ss_pred cEEecc
Q 003090 395 EELYMS 400 (848)
Q Consensus 395 ~~L~l~ 400 (848)
+.+.+.
T Consensus 313 ~~i~lp 318 (379)
T 4h09_A 313 SSVTLP 318 (379)
T ss_dssp CEEECC
T ss_pred CEEEcC
Confidence 555553
No 182
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=93.82 E-value=0.075 Score=53.90 Aligned_cols=48 Identities=25% Similarity=0.256 Sum_probs=39.5
Q ss_pred ccccccchhHHHHHHHHHHhc-------------CCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 155 GVYAFKSRESTMKDIMEAMKD-------------ENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 155 ~~~~~vG~~~~~~~i~~~L~~-------------~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
....++|.++.++.+.+.+.. .....+-++|..|+|||++|+.+.+..
T Consensus 15 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 15 RYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 346799999999999888752 344568899999999999999998764
No 183
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=93.68 E-value=0.067 Score=58.53 Aligned_cols=47 Identities=19% Similarity=0.350 Sum_probs=40.1
Q ss_pred cccccchhHHHHHHHHHHhcCCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 156 VYAFKSRESTMKDIMEAMKDENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 156 ~~~~vG~~~~~~~i~~~L~~~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
-..++|++++++.+++.+......-+-++|..|+|||++|+.+....
T Consensus 179 ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 179 LDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 34699999999999999976555566799999999999999998764
No 184
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.55 E-value=0.082 Score=49.57 Aligned_cols=113 Identities=12% Similarity=0.157 Sum_probs=62.2
Q ss_pred hcccCcEEEccCc-cccCC----c-hhhccccCCCEEEccCCCCc-----ccChhhccCCcccEEeccCCccccc----c
Q 003090 319 FLINLRTLRLHDR-RIQGD----L-SLIGELSGLEILDLSESDVS-----EIPVSFGRLSHLRLLDLTGCYILEL----I 383 (848)
Q Consensus 319 ~l~~L~~L~L~~~-~~~~~----~-~~i~~l~~L~~L~l~~~~l~-----~lp~~i~~L~~L~~L~l~~~~~~~~----~ 383 (848)
+-+.|+.|+|+++ .+... + ..+..-..|+.|+|++|.+. .+...+..-+.|++|+|++|.+... +
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 3456888888775 33221 1 44556677888888888776 3444455566777777777654321 1
Q ss_pred ChhhhhccccccEEecccccc--ccccccccccccCcccchhhhcccCCCcEEEeeccC
Q 003090 384 PRGVLSRLRKLEELYMSHSFR--HWQFESESEEDSSSNAKFIELGALSRLTSLHIHIPE 440 (848)
Q Consensus 384 p~~~l~~l~~L~~L~l~~~~~--~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~ 440 (848)
-.. +..=+.|++|+++++.. .+. ....+....|..-+.|+.|+++++.
T Consensus 119 a~a-L~~N~tL~~L~L~n~~~~~ig~--------~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 119 LRS-TLVTQSIVEFKADNQRQSVLGN--------QVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHH-TTTTCCCSEEECCCCSSCCCCH--------HHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHH-HhhCCceeEEECCCCcCcCcCH--------HHHHHHHHHHHhCCCcCeEeccCCC
Confidence 112 33334577777765422 010 1111234455566667777766543
No 185
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.48 E-value=0.058 Score=56.72 Aligned_cols=50 Identities=16% Similarity=0.294 Sum_probs=42.1
Q ss_pred CcccccccchhHHHHHHHHHHhcCCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 153 SEGVYAFKSRESTMKDIMEAMKDENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 153 ~~~~~~~vG~~~~~~~i~~~L~~~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
|..-..++|.++.++.+..++.......+-++|..|+||||+|+.+.+..
T Consensus 33 p~~~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 33 PKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp CSSTTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCHHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 33456799999999999999987655558899999999999999998764
No 186
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=93.47 E-value=0.12 Score=53.18 Aligned_cols=47 Identities=17% Similarity=0.188 Sum_probs=37.0
Q ss_pred cccchhHHHHHHHHHHh---------------cCCccEEEEEeCCCCchhHHHHHHHHHHhh
Q 003090 158 AFKSRESTMKDIMEAMK---------------DENVSITGICGMGGVGKTTLVKEIQKQAKE 204 (848)
Q Consensus 158 ~~vG~~~~~~~i~~~L~---------------~~~~~vi~i~G~gG~GKTtla~~v~~~~~~ 204 (848)
.++|.+..++.+.+++. ......+-++|..|+|||++|+.+.+....
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~ 93 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHR 93 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 58999999988887654 223346889999999999999988876543
No 187
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=93.20 E-value=0.087 Score=54.35 Aligned_cols=49 Identities=12% Similarity=0.217 Sum_probs=41.5
Q ss_pred cccccccchhHHHHHHHHHHhcCCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 154 EGVYAFKSRESTMKDIMEAMKDENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 154 ~~~~~~vG~~~~~~~i~~~L~~~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
..-.+++|++..++.+.+++.......+-++|..|+|||++|+.+.+..
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 14 RTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp SSGGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHH
T ss_pred CCHHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHh
Confidence 3346799999999999999887665568899999999999999998764
No 188
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.12 E-value=0.11 Score=57.62 Aligned_cols=52 Identities=12% Similarity=0.166 Sum_probs=42.7
Q ss_pred cCCcccccccchhHHHHHHHHHHhcC-----------------CccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 151 SSSEGVYAFKSRESTMKDIMEAMKDE-----------------NVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 151 ~~~~~~~~~vG~~~~~~~i~~~L~~~-----------------~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
+.|....+++|+++.++.+.+|+..+ ....+-++|..|+||||+|+.+.+..
T Consensus 33 yrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 33 YAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp TCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34445578999999999999999742 23678899999999999999998765
No 189
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=92.89 E-value=0.091 Score=48.96 Aligned_cols=41 Identities=24% Similarity=0.212 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHhc---CCccEEEEEeCCCCchhHHHHHHHHHHh
Q 003090 163 ESTMKDIMEAMKD---ENVSITGICGMGGVGKTTLVKEIQKQAK 203 (848)
Q Consensus 163 ~~~~~~i~~~L~~---~~~~vi~i~G~gG~GKTtla~~v~~~~~ 203 (848)
+..++.+.+++.+ ..-..+.++|..|+|||||++.+.+...
T Consensus 20 ~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 20 NRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp HHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3344444444443 2236899999999999999999998764
No 190
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=92.78 E-value=0.11 Score=53.91 Aligned_cols=47 Identities=21% Similarity=0.282 Sum_probs=38.6
Q ss_pred cccccchhHHHHHHHHHHhc-----CCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 156 VYAFKSRESTMKDIMEAMKD-----ENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 156 ~~~~vG~~~~~~~i~~~L~~-----~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
...++|++..++.+..++.. .....+-|+|..|+|||++|+.+.+..
T Consensus 11 ~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 11 LDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp TTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHH
T ss_pred HHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999988888762 233567899999999999999998765
No 191
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=92.67 E-value=0.14 Score=53.44 Aligned_cols=48 Identities=25% Similarity=0.291 Sum_probs=39.6
Q ss_pred ccccccchhHHHHHHHHHHhc-----CCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 155 GVYAFKSRESTMKDIMEAMKD-----ENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 155 ~~~~~vG~~~~~~~i~~~L~~-----~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
....++|++..++.+..++.. .....+-++|..|+|||++|+.+.+..
T Consensus 27 ~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~ 79 (338)
T 3pfi_A 27 NFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEM 79 (338)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHT
T ss_pred CHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 356799999999999888862 344567899999999999999997653
No 192
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.55 E-value=0.084 Score=55.48 Aligned_cols=49 Identities=14% Similarity=0.184 Sum_probs=40.0
Q ss_pred CcccccccchhHHHHHHHHHH-hcCCccEEEEEeCCCCchhHHHHHHHHH
Q 003090 153 SEGVYAFKSRESTMKDIMEAM-KDENVSITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 153 ~~~~~~~vG~~~~~~~i~~~L-~~~~~~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
|..-.+++|.++.++.+.+++ .......+-++|..|+||||+|+.+...
T Consensus 10 P~~~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 10 PKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp CCSGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHH
T ss_pred CCCHHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 334467899999999998888 6555555899999999999999998874
No 193
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=92.45 E-value=0.17 Score=53.61 Aligned_cols=47 Identities=17% Similarity=0.270 Sum_probs=39.7
Q ss_pred cccccchhHHHHHHHHHHhcCCc-cEEEEEeCCCCchhHHHHHHHHHH
Q 003090 156 VYAFKSRESTMKDIMEAMKDENV-SITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 156 ~~~~vG~~~~~~~i~~~L~~~~~-~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
...++|+++.++.+..++..... ..+-++|..|+||||+|+.+.+..
T Consensus 15 ~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l 62 (373)
T 1jr3_A 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 (373)
T ss_dssp TTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHH
T ss_pred hhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45699999999999999876543 467899999999999999998765
No 194
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=92.43 E-value=0.18 Score=51.44 Aligned_cols=48 Identities=15% Similarity=0.143 Sum_probs=38.8
Q ss_pred ccccccchhHHHHHHHHHHhc------------CCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 155 GVYAFKSRESTMKDIMEAMKD------------ENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 155 ~~~~~vG~~~~~~~i~~~L~~------------~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
....++|.++.++.+.+++.. .....+-++|..|+||||+|+.+.+..
T Consensus 19 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 19 EWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 346799999999998887741 234578899999999999999998754
No 195
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=92.33 E-value=0.17 Score=51.58 Aligned_cols=48 Identities=21% Similarity=0.196 Sum_probs=38.7
Q ss_pred ccccccchhHHHHHHHHHHhc-------------CCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 155 GVYAFKSRESTMKDIMEAMKD-------------ENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 155 ~~~~~vG~~~~~~~i~~~L~~-------------~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
....++|.++.++.+.+++.. .....+-++|..|.|||++|+.+.+..
T Consensus 13 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 13 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 346799999999888877641 334568899999999999999999764
No 196
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=92.16 E-value=0.055 Score=50.73 Aligned_cols=87 Identities=13% Similarity=0.083 Sum_probs=49.7
Q ss_pred hhhhcccCcEEEccCccccCC----c-hhhccccCCCEEEccCCCCc-----ccChhhccCCcccEEeccCCcc--ccc-
Q 003090 316 SLSFLINLRTLRLHDRRIQGD----L-SLIGELSGLEILDLSESDVS-----EIPVSFGRLSHLRLLDLTGCYI--LEL- 382 (848)
Q Consensus 316 ~~~~l~~L~~L~L~~~~~~~~----~-~~i~~l~~L~~L~l~~~~l~-----~lp~~i~~L~~L~~L~l~~~~~--~~~- 382 (848)
.+..-.+|+.|+|++|.+... + ..+..-+.|++|+|++|.|. .+-..+..-..|++|++++|.. .+.
T Consensus 65 aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~ 144 (197)
T 1pgv_A 65 AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQ 144 (197)
T ss_dssp HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHH
T ss_pred HHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHH
Confidence 344445677777777754322 1 34445567777777777776 3334455556688888875421 121
Q ss_pred ----cChhhhhccccccEEeccccc
Q 003090 383 ----IPRGVLSRLRKLEELYMSHSF 403 (848)
Q Consensus 383 ----~p~~~l~~l~~L~~L~l~~~~ 403 (848)
+... +..=+.|..|++..+.
T Consensus 145 g~~~ia~a-L~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 145 VEMDMMMA-IEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHHH-HHHCSSCCEEECCCCC
T ss_pred HHHHHHHH-HHhCCCcCeEeccCCC
Confidence 2222 4455677888776554
No 197
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=91.91 E-value=0.19 Score=47.77 Aligned_cols=41 Identities=20% Similarity=0.317 Sum_probs=32.0
Q ss_pred hhHHHHHHHHHHhc---CCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 162 RESTMKDIMEAMKD---ENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 162 ~~~~~~~i~~~L~~---~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
+++-++.+.+.+.. ....+++|+|..|.||||+++.+....
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45566777777763 344689999999999999999988654
No 198
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=91.85 E-value=0.17 Score=54.81 Aligned_cols=48 Identities=23% Similarity=0.337 Sum_probs=40.7
Q ss_pred ccccccchhHHH---HHHHHHHhcCCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 155 GVYAFKSRESTM---KDIMEAMKDENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 155 ~~~~~vG~~~~~---~~i~~~L~~~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
.-.+++|.+..+ ..+...+.......+-++|..|+||||+|+.+.+..
T Consensus 24 ~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 24 NLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA 74 (447)
T ss_dssp STTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh
Confidence 346799999888 677777777777789999999999999999999765
No 199
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.82 E-value=0.2 Score=52.23 Aligned_cols=51 Identities=12% Similarity=0.227 Sum_probs=41.6
Q ss_pred CCcccccccchhHHHHHHHHHHhcCCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 152 SSEGVYAFKSRESTMKDIMEAMKDENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 152 ~~~~~~~~vG~~~~~~~i~~~L~~~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
.|..-.+++|.+..++.+..++.......+-++|..|+||||+|+.+.+..
T Consensus 20 rp~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 20 RPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp CCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 344456788999888888888877666568999999999999999998764
No 200
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=91.80 E-value=0.19 Score=49.98 Aligned_cols=47 Identities=19% Similarity=0.191 Sum_probs=36.0
Q ss_pred cccccchhHHHHHHHHHHh---c---------CCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 156 VYAFKSRESTMKDIMEAMK---D---------ENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 156 ~~~~vG~~~~~~~i~~~L~---~---------~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
-.+++|.++.++.+.+++. . ....-+-++|..|+|||++|+.+.+..
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999988887766553 1 222456799999999999999998764
No 201
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=91.76 E-value=0.26 Score=46.81 Aligned_cols=50 Identities=18% Similarity=0.131 Sum_probs=33.0
Q ss_pred HHHHHHHHHhcCC----ccEEEEEeCCCCchhHHHHHHHHHHhhccccCcEEEEEe
Q 003090 165 TMKDIMEAMKDEN----VSITGICGMGGVGKTTLVKEIQKQAKEMKMFDDVAMAVV 216 (848)
Q Consensus 165 ~~~~i~~~L~~~~----~~vi~i~G~gG~GKTtla~~v~~~~~~~~~F~~~~wv~v 216 (848)
.++.+.+++.... ...+-++|..|+||||+|+.+++..... .....++..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~--~~~~~~~~~ 90 (202)
T 2w58_A 37 AIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKR--NVSSLIVYV 90 (202)
T ss_dssp HHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTT--TCCEEEEEH
T ss_pred HHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEh
Confidence 3444555555331 1578899999999999999999876432 234455543
No 202
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=91.70 E-value=0.25 Score=42.96 Aligned_cols=54 Identities=22% Similarity=0.370 Sum_probs=34.7
Q ss_pred EEEccCCCCc--ccChhhccCCcccEEeccCCccccccChhhhhccccccEEecccccc
Q 003090 348 ILDLSESDVS--EIPVSFGRLSHLRLLDLTGCYILELIPRGVLSRLRKLEELYMSHSFR 404 (848)
Q Consensus 348 ~L~l~~~~l~--~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~ 404 (848)
.++.+++.++ .+|..+- .+|++|+|++|.+ ..+|.+.+..+++|+.|++.+|..
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l-~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNL-TALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCC-SSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcC-CccChhhhhhccccCEEEecCCCe
Confidence 5666666666 6664432 3577777777544 456666667777777777777654
No 203
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=91.65 E-value=0.38 Score=46.96 Aligned_cols=59 Identities=14% Similarity=0.162 Sum_probs=38.1
Q ss_pred ccccch---hHHHHHHHHHHhcCCccEEEEEeCCCCchhHHHHHHHHHHhhccccCcEEEEEec
Q 003090 157 YAFKSR---ESTMKDIMEAMKDENVSITGICGMGGVGKTTLVKEIQKQAKEMKMFDDVAMAVVS 217 (848)
Q Consensus 157 ~~~vG~---~~~~~~i~~~L~~~~~~vi~i~G~gG~GKTtla~~v~~~~~~~~~F~~~~wv~vs 217 (848)
..++|. +..++.+..+........+-|+|..|+||||+|+.+.+..... .....++..+
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~--~~~~~~~~~~ 89 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANEL--ERRSFYIPLG 89 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEEGG
T ss_pred hhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEHH
Confidence 445653 3444555555544456788899999999999999998766433 2234555443
No 204
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=91.64 E-value=0.24 Score=51.97 Aligned_cols=47 Identities=23% Similarity=0.106 Sum_probs=38.4
Q ss_pred cccccchhHHHHHHHHHHh------------cCCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 156 VYAFKSRESTMKDIMEAMK------------DENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 156 ~~~~vG~~~~~~~i~~~L~------------~~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
...++|.++.++.+.+++. ......+-++|..|+|||++|+.+.+..
T Consensus 83 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 83 WEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred HHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 4679999999999888774 1234578899999999999999998754
No 205
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=91.56 E-value=0.089 Score=46.84 Aligned_cols=44 Identities=9% Similarity=0.179 Sum_probs=32.6
Q ss_pred ccccchhHHHHHHHHHHh---cCCccEEEEEeCCCCchhHHHHHHHHH
Q 003090 157 YAFKSRESTMKDIMEAMK---DENVSITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 157 ~~~vG~~~~~~~i~~~L~---~~~~~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
..++|.+..++++.+.+. ..+. -|-|+|-.|.|||++|+.+.+.
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~-~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTS-PVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSS-CEEEEEETTCCHHHHHGGGCCT
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCC-cEEEECCCCccHHHHHHHHHHh
Confidence 468899999988888876 3333 4669999999999999998754
No 206
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=91.19 E-value=0.2 Score=58.70 Aligned_cols=47 Identities=19% Similarity=0.350 Sum_probs=40.4
Q ss_pred cccccchhHHHHHHHHHHhcCCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 156 VYAFKSRESTMKDIMEAMKDENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 156 ~~~~vG~~~~~~~i~~~L~~~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
...++|+++.++.+++.+......-+=++|..|+|||++|+.+.+..
T Consensus 179 ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 179 LDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 35699999999999999986555567799999999999999998764
No 207
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=91.11 E-value=0.16 Score=60.24 Aligned_cols=47 Identities=17% Similarity=0.357 Sum_probs=40.6
Q ss_pred cccccchhHHHHHHHHHHhcCCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 156 VYAFKSRESTMKDIMEAMKDENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 156 ~~~~vG~~~~~~~i~~~L~~~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
-..++|+++++..+++.+.......+-++|..|+||||+|+.+.+..
T Consensus 169 ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 169 LDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp SCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 35689999999999999986655567899999999999999998765
No 208
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=91.06 E-value=0.27 Score=48.74 Aligned_cols=48 Identities=21% Similarity=0.247 Sum_probs=36.1
Q ss_pred ccccccchhHHHHHHHHHHh---c---------CCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 155 GVYAFKSRESTMKDIMEAMK---D---------ENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 155 ~~~~~vG~~~~~~~i~~~L~---~---------~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
.-..++|.+..++.+.+.+. . ....-+-++|..|.||||+|+.+.+..
T Consensus 10 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 10 TFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp CGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 34679999988887766543 1 112347799999999999999998765
No 209
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=90.87 E-value=1.1 Score=45.83 Aligned_cols=28 Identities=29% Similarity=0.418 Sum_probs=23.8
Q ss_pred CCccEEEEEeCCCCchhHHHHHHHHHHh
Q 003090 176 ENVSITGICGMGGVGKTTLVKEIQKQAK 203 (848)
Q Consensus 176 ~~~~vi~i~G~gG~GKTtla~~v~~~~~ 203 (848)
..-.+++++|..|+||||+++.+....+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~ 154 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLK 154 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4457999999999999999998886654
No 210
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=90.78 E-value=0.31 Score=50.13 Aligned_cols=44 Identities=18% Similarity=0.313 Sum_probs=33.5
Q ss_pred cchhHHHHHHHHHHh----cCCccEEEEEeCCCCchhHHHHHHHHHHh
Q 003090 160 KSRESTMKDIMEAMK----DENVSITGICGMGGVGKTTLVKEIQKQAK 203 (848)
Q Consensus 160 vG~~~~~~~i~~~L~----~~~~~vi~i~G~gG~GKTtla~~v~~~~~ 203 (848)
|+.+.-.+.+++.+. ......+.++|+.|+||||+++.+.....
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 455666777777764 34456699999999999999999887653
No 211
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=90.77 E-value=0.22 Score=50.93 Aligned_cols=46 Identities=20% Similarity=0.281 Sum_probs=37.2
Q ss_pred ccccchhHHHHHHHHHHhc--------------CCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 157 YAFKSRESTMKDIMEAMKD--------------ENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 157 ~~~vG~~~~~~~i~~~L~~--------------~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
..++|.++.++.+...+.. .....+-++|..|+|||++|+.+.+..
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999988887753 223457799999999999999998765
No 212
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=90.66 E-value=0.24 Score=49.61 Aligned_cols=47 Identities=19% Similarity=0.222 Sum_probs=33.8
Q ss_pred cccccchhHHHHHHHHHHh----------cCCc---cEEEEEeCCCCchhHHHHHHHHHH
Q 003090 156 VYAFKSRESTMKDIMEAMK----------DENV---SITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 156 ~~~~vG~~~~~~~i~~~L~----------~~~~---~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
..++.|.++.++.+.+.+. .-++ .=+.++|..|.||||||+.+....
T Consensus 9 ~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~ 68 (274)
T 2x8a_A 9 WADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANES 68 (274)
T ss_dssp ---CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHc
Confidence 4678899988888777543 1111 228999999999999999998754
No 213
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=90.61 E-value=0.18 Score=45.23 Aligned_cols=44 Identities=16% Similarity=0.258 Sum_probs=31.5
Q ss_pred ccccchhHHHHHHHHHHhcCCccEEEEEeCCCCchhHHHHHHHHHHh
Q 003090 157 YAFKSRESTMKDIMEAMKDENVSITGICGMGGVGKTTLVKEIQKQAK 203 (848)
Q Consensus 157 ~~~vG~~~~~~~i~~~L~~~~~~vi~i~G~gG~GKTtla~~v~~~~~ 203 (848)
..++|.+... +..+....-..+.++|..|.|||||++.+.+...
T Consensus 18 ~f~~g~n~~~---~~~l~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 61 (149)
T 2kjq_A 18 KFLGTENAEL---VYVLRHKHGQFIYVWGEEGAGKSHLLQAWVAQAL 61 (149)
T ss_dssp CCCSCCTHHH---HHHCCCCCCSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred hcCcCccHHH---HHHHHhcCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3445655443 3444433556899999999999999999998764
No 214
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=90.57 E-value=0.3 Score=50.65 Aligned_cols=47 Identities=28% Similarity=0.358 Sum_probs=36.2
Q ss_pred cccccchhHHHHHHHHHHh-----cCCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 156 VYAFKSRESTMKDIMEAMK-----DENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 156 ~~~~vG~~~~~~~i~~~L~-----~~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
-..++|.+..++.+--.+. .+....+.++|..|+||||||+.+.+..
T Consensus 24 l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 24 LDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred HHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4567888777766655554 2344679999999999999999999865
No 215
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=90.42 E-value=0.26 Score=57.72 Aligned_cols=47 Identities=17% Similarity=0.304 Sum_probs=40.8
Q ss_pred cccccchhHHHHHHHHHHhcCCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 156 VYAFKSRESTMKDIMEAMKDENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 156 ~~~~vG~~~~~~~i~~~L~~~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
...++|++++++.+++.|......-+-++|..|+||||+|+.+.+..
T Consensus 185 ~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 185 IDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 35689999999999999986666667899999999999999998764
No 216
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=90.34 E-value=0.38 Score=49.52 Aligned_cols=48 Identities=21% Similarity=0.171 Sum_probs=38.2
Q ss_pred ccccccchhHHHHHHHHHHh------------cCCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 155 GVYAFKSRESTMKDIMEAMK------------DENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 155 ~~~~~vG~~~~~~~i~~~L~------------~~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
...+++|.++.++.+.+.+. ....+-+-++|..|+|||++|+.+.+..
T Consensus 10 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 10 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 45789999999988887763 1123567899999999999999999764
No 217
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=90.31 E-value=0.27 Score=47.01 Aligned_cols=39 Identities=18% Similarity=0.370 Sum_probs=29.3
Q ss_pred HHHHHHHHHhc--CCccEEEEEeCCCCchhHHHHHHHHHHh
Q 003090 165 TMKDIMEAMKD--ENVSITGICGMGGVGKTTLVKEIQKQAK 203 (848)
Q Consensus 165 ~~~~i~~~L~~--~~~~vi~i~G~gG~GKTtla~~v~~~~~ 203 (848)
-.+++.+.+.. ..-.+++|+|..|.|||||++.+.....
T Consensus 7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 7 LCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34455555542 3457999999999999999999987654
No 218
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=90.05 E-value=0.4 Score=49.40 Aligned_cols=48 Identities=23% Similarity=0.212 Sum_probs=38.8
Q ss_pred ccccccchhHHHHHHHHHHh------------cCCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 155 GVYAFKSRESTMKDIMEAMK------------DENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 155 ~~~~~vG~~~~~~~i~~~L~------------~~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
.-..++|.++.++.+.+++. .....-+=++|..|.|||++|+++.+..
T Consensus 16 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 16 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 45789999999999988873 1123457899999999999999998764
No 219
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=90.04 E-value=0.34 Score=46.89 Aligned_cols=39 Identities=18% Similarity=0.234 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhcCCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 164 STMKDIMEAMKDENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 164 ~~~~~i~~~L~~~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
+..+.+.+.+......+|.++|.+|+||||++..+....
T Consensus 24 ~~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 24 RLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 334555555556677899999999999999998887654
No 220
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=90.03 E-value=0.33 Score=51.21 Aligned_cols=48 Identities=15% Similarity=0.304 Sum_probs=36.8
Q ss_pred cccccchhHHHHH---HHHHHhcCCc--cEEEEEeCCCCchhHHHHHHHHHHh
Q 003090 156 VYAFKSRESTMKD---IMEAMKDENV--SITGICGMGGVGKTTLVKEIQKQAK 203 (848)
Q Consensus 156 ~~~~vG~~~~~~~---i~~~L~~~~~--~vi~i~G~gG~GKTtla~~v~~~~~ 203 (848)
...++|.+..++. +.+.+..... ..+-++|..|+|||++|+.+.+...
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4579999988776 4444444333 4788999999999999999998763
No 221
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=89.98 E-value=0.24 Score=47.73 Aligned_cols=46 Identities=20% Similarity=0.269 Sum_probs=34.1
Q ss_pred ccccchhHHHHHHHHHHhcCCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 157 YAFKSRESTMKDIMEAMKDENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 157 ~~~vG~~~~~~~i~~~L~~~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
..+-+.++..+.+.+.+......++.++|.+|+||||++..+....
T Consensus 9 ~~l~~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 9 DLLAENKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp --CHHHHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred HHHhhcHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3344555666666666666677899999999999999998887654
No 222
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=89.89 E-value=0.37 Score=47.64 Aligned_cols=47 Identities=21% Similarity=0.294 Sum_probs=33.8
Q ss_pred cccccchhHHHHHHHHHHh---c------CC---ccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 156 VYAFKSRESTMKDIMEAMK---D------EN---VSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 156 ~~~~vG~~~~~~~i~~~L~---~------~~---~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
..+++|.++.+.++.+... . -+ ..-+.++|..|+||||+++.+....
T Consensus 15 ~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 15 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4578898877766655433 1 11 1228899999999999999999765
No 223
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=89.88 E-value=1 Score=47.99 Aligned_cols=27 Identities=30% Similarity=0.255 Sum_probs=22.6
Q ss_pred CccEEEEEeCCCCchhHHHHHHHHHHh
Q 003090 177 NVSITGICGMGGVGKTTLVKEIQKQAK 203 (848)
Q Consensus 177 ~~~vi~i~G~gG~GKTtla~~v~~~~~ 203 (848)
...++.++|.+|+||||++..+.....
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~ 122 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYK 122 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357999999999999999888776554
No 224
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=89.84 E-value=0.16 Score=46.88 Aligned_cols=20 Identities=35% Similarity=0.552 Sum_probs=18.6
Q ss_pred cEEEEEeCCCCchhHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEI 198 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v 198 (848)
.+|.++|+.|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37899999999999999999
No 225
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=89.76 E-value=0.27 Score=49.01 Aligned_cols=45 Identities=13% Similarity=0.234 Sum_probs=33.4
Q ss_pred ccccchhHHHHHHHHHHh---cCCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 157 YAFKSRESTMKDIMEAMK---DENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 157 ~~~vG~~~~~~~i~~~L~---~~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
..++|.+..+..+.+.+. ..+ ..+-|+|-.|+|||++|+.+.+..
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~-~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLD-KPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSC-SCEEEECCTTSCHHHHHHHHHHTS
T ss_pred ccceeCCHHHHHHHHHHHHHhCCC-CCEEEECCCCCcHHHHHHHHHHhc
Confidence 457899999988887765 233 456699999999999999998754
No 226
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=89.36 E-value=0.19 Score=47.24 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=20.6
Q ss_pred ccEEEEEeCCCCchhHHHHHHHH
Q 003090 178 VSITGICGMGGVGKTTLVKEIQK 200 (848)
Q Consensus 178 ~~vi~i~G~gG~GKTtla~~v~~ 200 (848)
-.++.++|+.|.||||+++.+..
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHh
Confidence 36899999999999999999875
No 227
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=89.32 E-value=0.49 Score=50.28 Aligned_cols=48 Identities=17% Similarity=0.178 Sum_probs=38.8
Q ss_pred ccccccchhHHHHHHHHHHh------------cCCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 155 GVYAFKSRESTMKDIMEAMK------------DENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 155 ~~~~~vG~~~~~~~i~~~L~------------~~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
....++|.+..++.+.+++. .....-+-++|..|+|||++|+.+.+..
T Consensus 113 ~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 113 KFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred ChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 45689999999999998874 1223568899999999999999997653
No 228
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=89.28 E-value=0.43 Score=47.94 Aligned_cols=48 Identities=21% Similarity=0.293 Sum_probs=34.9
Q ss_pred ccccccchhHHHHHHHHHHh---c------CCc---cEEEEEeCCCCchhHHHHHHHHHH
Q 003090 155 GVYAFKSRESTMKDIMEAMK---D------ENV---SITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 155 ~~~~~vG~~~~~~~i~~~L~---~------~~~---~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
....++|.++.++++.+... . -+. .-+.++|..|+||||+++.+....
T Consensus 38 ~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 38 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp CGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHc
Confidence 34678999887776655543 1 111 128899999999999999998765
No 229
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=88.94 E-value=0.23 Score=46.11 Aligned_cols=23 Identities=17% Similarity=0.346 Sum_probs=20.9
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.++.|+|..|+||||+++.+...
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 58999999999999999998864
No 230
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=88.89 E-value=0.45 Score=48.68 Aligned_cols=46 Identities=20% Similarity=0.332 Sum_probs=37.6
Q ss_pred ccccchhHHHHHHHHHHhcC---------CccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 157 YAFKSRESTMKDIMEAMKDE---------NVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 157 ~~~vG~~~~~~~i~~~L~~~---------~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
..++|.+..++.+...+... ....+-++|..|+||||+|+.+.+..
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHH
Confidence 45789999998888887631 23578999999999999999999765
No 231
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=88.86 E-value=0.25 Score=46.85 Aligned_cols=25 Identities=32% Similarity=0.359 Sum_probs=21.9
Q ss_pred ccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 178 VSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 178 ~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
-.+|.++|+.|+||||+|+.+....
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3589999999999999999998654
No 232
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=88.79 E-value=0.46 Score=47.52 Aligned_cols=46 Identities=15% Similarity=0.201 Sum_probs=34.5
Q ss_pred ccccchhHHHHHHHHH-------Hh---cCCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 157 YAFKSRESTMKDIMEA-------MK---DENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 157 ~~~vG~~~~~~~i~~~-------L~---~~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
..++|....++.+++. +. ......+-++|..|+|||++|+.+.+..
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 4577887777766663 32 3344567899999999999999998864
No 233
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=88.78 E-value=0.51 Score=48.63 Aligned_cols=50 Identities=14% Similarity=0.093 Sum_probs=40.1
Q ss_pred CcccccccchhHHHHHHHHHHhcCCc-cEEEEEeCCCCchhHHHHHHHHHH
Q 003090 153 SEGVYAFKSRESTMKDIMEAMKDENV-SITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 153 ~~~~~~~vG~~~~~~~i~~~L~~~~~-~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
|..-.+++|.++.++.+.+++..... .++=+.|..|+|||++|+.+.+..
T Consensus 22 P~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l 72 (324)
T 3u61_B 22 PSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV 72 (324)
T ss_dssp CCSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT
T ss_pred CCCHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 33457899999999999999986554 455667779999999999998754
No 234
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=88.77 E-value=0.25 Score=45.32 Aligned_cols=24 Identities=17% Similarity=0.178 Sum_probs=20.9
Q ss_pred cEEEEEeCCCCchhHHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
.+|.|.|+.|+||||+|+.+....
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999987653
No 235
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=88.60 E-value=0.35 Score=44.07 Aligned_cols=27 Identities=26% Similarity=0.327 Sum_probs=22.8
Q ss_pred CccEEEEEeCCCCchhHHHHHHHHHHh
Q 003090 177 NVSITGICGMGGVGKTTLVKEIQKQAK 203 (848)
Q Consensus 177 ~~~vi~i~G~gG~GKTtla~~v~~~~~ 203 (848)
...++.|+|..|.||||++..+.....
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhH
Confidence 457899999999999999999887653
No 236
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=88.44 E-value=0.41 Score=48.79 Aligned_cols=46 Identities=13% Similarity=0.235 Sum_probs=36.4
Q ss_pred ccccchhHHHHHHHHHHhc--CCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 157 YAFKSRESTMKDIMEAMKD--ENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 157 ~~~vG~~~~~~~i~~~L~~--~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
..++|....+..+.+.+.. .....|-|+|-.|+|||++|+.+.+..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 4589999999998888762 222346699999999999999998754
No 237
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=88.32 E-value=0.29 Score=45.31 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=20.4
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.+|-++|+.|+||||+|+.+.+.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47889999999999999998764
No 238
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=88.29 E-value=1.7 Score=46.52 Aligned_cols=27 Identities=30% Similarity=0.437 Sum_probs=22.4
Q ss_pred CccEEEEEeCCCCchhHHHHHHHHHHh
Q 003090 177 NVSITGICGMGGVGKTTLVKEIQKQAK 203 (848)
Q Consensus 177 ~~~vi~i~G~gG~GKTtla~~v~~~~~ 203 (848)
...+|.++|.+|+||||++..+-....
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~ 125 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLR 125 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 457999999999999999887775554
No 239
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=88.13 E-value=0.53 Score=49.20 Aligned_cols=48 Identities=23% Similarity=0.212 Sum_probs=37.9
Q ss_pred ccccccchhHHHHHHHHHHh------------cCCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 155 GVYAFKSRESTMKDIMEAMK------------DENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 155 ~~~~~vG~~~~~~~i~~~L~------------~~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
....++|.++.++.+.+.+. .....-+-++|..|+|||++|+.+.+..
T Consensus 49 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 49 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 34679999999999888763 0112347789999999999999999865
No 240
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=88.10 E-value=0.32 Score=46.10 Aligned_cols=27 Identities=26% Similarity=0.453 Sum_probs=22.7
Q ss_pred CCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 176 ENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 176 ~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
..-.++.++|+.|.||||+++.+....
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 445789999999999999999998654
No 241
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=88.10 E-value=0.25 Score=45.48 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=21.0
Q ss_pred cEEEEEeCCCCchhHHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
.+|.|+|+.|.||||+++.+....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999987653
No 242
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=87.68 E-value=3.9 Score=41.21 Aligned_cols=26 Identities=27% Similarity=0.316 Sum_probs=22.0
Q ss_pred ccEEEEEeCCCCchhHHHHHHHHHHh
Q 003090 178 VSITGICGMGGVGKTTLVKEIQKQAK 203 (848)
Q Consensus 178 ~~vi~i~G~gG~GKTtla~~v~~~~~ 203 (848)
..++.++|.+|+||||++..+.....
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~ 123 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYK 123 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999988876543
No 243
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=87.66 E-value=0.81 Score=49.47 Aligned_cols=48 Identities=21% Similarity=0.171 Sum_probs=38.6
Q ss_pred ccccccchhHHHHHHHHHHh------------cCCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 155 GVYAFKSRESTMKDIMEAMK------------DENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 155 ~~~~~vG~~~~~~~i~~~L~------------~~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
....++|.++.++.+.+.+. ....+-+-++|..|+|||++|+.+.+..
T Consensus 132 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 132 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 35679999999998888763 1233568899999999999999999764
No 244
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=87.65 E-value=0.31 Score=48.65 Aligned_cols=47 Identities=21% Similarity=0.266 Sum_probs=34.8
Q ss_pred cccccchhHHHHHHHHHHh---c---------CCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 156 VYAFKSRESTMKDIMEAMK---D---------ENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 156 ~~~~vG~~~~~~~i~~~L~---~---------~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
...++|.++.++.+.+.+. . ....-+-++|..|+|||++|+.+.+..
T Consensus 10 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 10 FKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp STTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred HHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 3568999888877776554 0 112235689999999999999998764
No 245
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=87.64 E-value=0.28 Score=46.51 Aligned_cols=25 Identities=20% Similarity=0.363 Sum_probs=21.8
Q ss_pred ccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 178 VSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 178 ~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
..+|.|+|..|+||||+|+.+....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999988654
No 246
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=87.63 E-value=0.31 Score=46.16 Aligned_cols=29 Identities=24% Similarity=0.418 Sum_probs=24.4
Q ss_pred cCCccEEEEEeCCCCchhHHHHHHHHHHh
Q 003090 175 DENVSITGICGMGGVGKTTLVKEIQKQAK 203 (848)
Q Consensus 175 ~~~~~vi~i~G~gG~GKTtla~~v~~~~~ 203 (848)
...-.+|.|+|+.|.||||+++.+.....
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34457999999999999999999987653
No 247
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=87.55 E-value=0.6 Score=47.05 Aligned_cols=28 Identities=18% Similarity=0.106 Sum_probs=23.6
Q ss_pred CCccEEEEEeCCCCchhHHHHHHHHHHh
Q 003090 176 ENVSITGICGMGGVGKTTLVKEIQKQAK 203 (848)
Q Consensus 176 ~~~~vi~i~G~gG~GKTtla~~v~~~~~ 203 (848)
....+|+|+|..|+||||+|+.+.....
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3456899999999999999998886654
No 248
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=87.45 E-value=0.35 Score=44.60 Aligned_cols=23 Identities=30% Similarity=0.557 Sum_probs=20.8
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.++.++|+.|.||||+++.+...
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh
Confidence 58999999999999999998764
No 249
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=87.40 E-value=0.3 Score=45.79 Aligned_cols=22 Identities=36% Similarity=0.501 Sum_probs=19.8
Q ss_pred cEEEEEeCCCCchhHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQK 200 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~ 200 (848)
.++.++|..|.||||+++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999964
No 250
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=87.36 E-value=0.3 Score=49.88 Aligned_cols=25 Identities=24% Similarity=0.549 Sum_probs=20.6
Q ss_pred CCccEEEEEeCCCCchhHHHHHHHH
Q 003090 176 ENVSITGICGMGGVGKTTLVKEIQK 200 (848)
Q Consensus 176 ~~~~vi~i~G~gG~GKTtla~~v~~ 200 (848)
.+.+||+|.|=|||||||.+-.+--
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~ 70 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSA 70 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCccCHHHHHHHHHH
Confidence 5678999999999999998765543
No 251
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=87.29 E-value=0.26 Score=45.38 Aligned_cols=21 Identities=33% Similarity=0.479 Sum_probs=18.8
Q ss_pred cEEEEEeCCCCchhHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQ 199 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~ 199 (848)
.+++++|..|.||||+++.++
T Consensus 10 ei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 589999999999999999744
No 252
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=87.29 E-value=0.33 Score=46.09 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=20.8
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.+++++|..|+||||+++.+...
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 58999999999999999998764
No 253
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=87.07 E-value=4.5 Score=43.08 Aligned_cols=27 Identities=30% Similarity=0.439 Sum_probs=22.6
Q ss_pred CccEEEEEeCCCCchhHHHHHHHHHHh
Q 003090 177 NVSITGICGMGGVGKTTLVKEIQKQAK 203 (848)
Q Consensus 177 ~~~vi~i~G~gG~GKTtla~~v~~~~~ 203 (848)
...+|.++|.+|+||||++..+.....
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 457999999999999999887776553
No 254
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=86.97 E-value=0.36 Score=44.66 Aligned_cols=22 Identities=32% Similarity=0.385 Sum_probs=20.0
Q ss_pred cEEEEEeCCCCchhHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQK 200 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~ 200 (848)
.+|.++|+.|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999876
No 255
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=86.97 E-value=0.35 Score=47.56 Aligned_cols=26 Identities=27% Similarity=0.318 Sum_probs=22.5
Q ss_pred CccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 177 NVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 177 ~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
...++.|+|..|+||||+++.+.+..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999998554
No 256
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=86.95 E-value=0.37 Score=44.61 Aligned_cols=24 Identities=50% Similarity=0.540 Sum_probs=21.5
Q ss_pred EEEEEeCCCCchhHHHHHHHHHHh
Q 003090 180 ITGICGMGGVGKTTLVKEIQKQAK 203 (848)
Q Consensus 180 vi~i~G~gG~GKTtla~~v~~~~~ 203 (848)
.++|+|..|+|||||++.+.....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999997764
No 257
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=86.88 E-value=0.37 Score=45.76 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=19.9
Q ss_pred cEEEEEeCCCCchhHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQK 200 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~ 200 (848)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3699999999999999999875
No 258
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=86.83 E-value=0.39 Score=44.68 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=21.3
Q ss_pred ccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 178 VSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 178 ~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
...|.++|+.|+||||+|+.+....
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578899999999999999987643
No 259
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=86.63 E-value=0.42 Score=45.64 Aligned_cols=26 Identities=31% Similarity=0.460 Sum_probs=22.5
Q ss_pred CccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 177 NVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 177 ~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
.-.+++|+|..|.||||+++.+....
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999998754
No 260
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=86.51 E-value=0.4 Score=45.42 Aligned_cols=23 Identities=39% Similarity=0.536 Sum_probs=20.6
Q ss_pred EEEEEeCCCCchhHHHHHHHHHH
Q 003090 180 ITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 180 vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
.|.|.|+.|+||||+++.+.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 58999999999999999998654
No 261
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=86.47 E-value=0.34 Score=45.26 Aligned_cols=24 Identities=33% Similarity=0.444 Sum_probs=21.2
Q ss_pred cEEEEEeCCCCchhHHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
.+++++|..|+||||+++.+....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 478999999999999999998654
No 262
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=86.34 E-value=0.43 Score=44.67 Aligned_cols=25 Identities=28% Similarity=0.534 Sum_probs=21.6
Q ss_pred cEEEEEeCCCCchhHHHHHHHHHHh
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQAK 203 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~~~ 203 (848)
.+|.|.|+.|+||||+|+.+.+...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3688999999999999999987653
No 263
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=86.32 E-value=0.4 Score=45.53 Aligned_cols=23 Identities=35% Similarity=0.471 Sum_probs=20.6
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.+++++|..|+||||+++.+...
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999998754
No 264
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=86.28 E-value=0.38 Score=44.55 Aligned_cols=24 Identities=42% Similarity=0.513 Sum_probs=20.9
Q ss_pred cEEEEEeCCCCchhHHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
.+|.++|+.|+||||+++.+....
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHh
Confidence 568899999999999999988653
No 265
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=86.17 E-value=0.42 Score=43.15 Aligned_cols=27 Identities=30% Similarity=0.364 Sum_probs=22.9
Q ss_pred CCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 176 ENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 176 ~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
..-.+++++|..|.|||||.+.+....
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 344689999999999999999998654
No 266
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=86.08 E-value=0.37 Score=45.53 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=21.2
Q ss_pred cEEEEEeCCCCchhHHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
.+++|+|..|+|||||++.+....
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 578999999999999999988654
No 267
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=86.04 E-value=0.39 Score=45.63 Aligned_cols=25 Identities=36% Similarity=0.656 Sum_probs=21.5
Q ss_pred ccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 178 VSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 178 ~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
-.+|.++|+.|+||||+++.+....
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3578999999999999999987643
No 268
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=85.75 E-value=0.41 Score=45.64 Aligned_cols=25 Identities=24% Similarity=0.436 Sum_probs=21.8
Q ss_pred ccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 178 VSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 178 ~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
-.+++|+|..|+|||||++.+....
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3689999999999999999988654
No 269
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=85.68 E-value=0.47 Score=44.33 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=21.3
Q ss_pred cEEEEEeCCCCchhHHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
.+|.|.|+.|+||||+++.+.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999998754
No 270
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=85.60 E-value=0.46 Score=45.29 Aligned_cols=25 Identities=28% Similarity=0.376 Sum_probs=21.7
Q ss_pred CccEEEEEeCCCCchhHHHHHHHHH
Q 003090 177 NVSITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 177 ~~~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.-.++.++|..|+||||+++.+...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 3468999999999999999998764
No 271
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=85.56 E-value=0.64 Score=48.46 Aligned_cols=47 Identities=19% Similarity=0.224 Sum_probs=34.0
Q ss_pred cccccchhHHHHHHHHHHhcCCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 156 VYAFKSRESTMKDIMEAMKDENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 156 ~~~~vG~~~~~~~i~~~L~~~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
-..++|.+..++.+..........-+=++|..|+|||++|+.+.+..
T Consensus 23 f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 23 FSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred chhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhC
Confidence 45689998866654444333223347799999999999999998754
No 272
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=85.47 E-value=0.48 Score=45.83 Aligned_cols=24 Identities=33% Similarity=0.479 Sum_probs=21.1
Q ss_pred cEEEEEeCCCCchhHHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
.+|+|+|..|.||||+++.+....
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999987643
No 273
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=85.46 E-value=0.42 Score=45.45 Aligned_cols=22 Identities=36% Similarity=0.492 Sum_probs=19.6
Q ss_pred cEEEEEeCCCCchhHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQK 200 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~ 200 (848)
.+|+|+|+.|.||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998864
No 274
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=85.39 E-value=0.44 Score=45.37 Aligned_cols=23 Identities=52% Similarity=0.718 Sum_probs=20.4
Q ss_pred ccEEEEEeCCCCchhHHHHHHHH
Q 003090 178 VSITGICGMGGVGKTTLVKEIQK 200 (848)
Q Consensus 178 ~~vi~i~G~gG~GKTtla~~v~~ 200 (848)
..+|+|+|..|.||||+|+.+..
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999998864
No 275
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=85.37 E-value=0.56 Score=44.37 Aligned_cols=26 Identities=31% Similarity=0.412 Sum_probs=22.2
Q ss_pred CCccEEEEEeCCCCchhHHHHHHHHH
Q 003090 176 ENVSITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 176 ~~~~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
....+|+|+|+.|.||||+++.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34568999999999999999998763
No 276
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=85.31 E-value=0.52 Score=43.95 Aligned_cols=26 Identities=23% Similarity=0.382 Sum_probs=22.6
Q ss_pred ccEEEEEeCCCCchhHHHHHHHHHHh
Q 003090 178 VSITGICGMGGVGKTTLVKEIQKQAK 203 (848)
Q Consensus 178 ~~vi~i~G~gG~GKTtla~~v~~~~~ 203 (848)
-.+|.++|+.|.||||+++.+.....
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 35799999999999999999987654
No 277
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=85.29 E-value=0.43 Score=48.69 Aligned_cols=27 Identities=30% Similarity=0.346 Sum_probs=23.4
Q ss_pred CccEEEEEeCCCCchhHHHHHHHHHHh
Q 003090 177 NVSITGICGMGGVGKTTLVKEIQKQAK 203 (848)
Q Consensus 177 ~~~vi~i~G~gG~GKTtla~~v~~~~~ 203 (848)
.-.+++|+|..|.|||||++.+.....
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 446999999999999999999987654
No 278
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=85.29 E-value=0.53 Score=44.06 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=21.1
Q ss_pred cEEEEEeCCCCchhHHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
.+|.++|+.|+||||+|+.+....
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 578999999999999999987643
No 279
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=85.18 E-value=0.96 Score=45.55 Aligned_cols=24 Identities=29% Similarity=0.320 Sum_probs=21.0
Q ss_pred ccEEEEEeCCCCchhHHHHHHHHH
Q 003090 178 VSITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 178 ~~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
..+|-++|+.|+||||+|+.+...
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 467889999999999999998754
No 280
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=85.13 E-value=0.47 Score=43.71 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=20.4
Q ss_pred EEEEEeCCCCchhHHHHHHHHHH
Q 003090 180 ITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 180 vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
+|.|+|+.|.||||+|+.+....
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58899999999999999997654
No 281
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=85.02 E-value=0.87 Score=47.76 Aligned_cols=46 Identities=22% Similarity=0.164 Sum_probs=36.7
Q ss_pred ccccchhHHHHHHHHHHh---------------cCCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 157 YAFKSRESTMKDIMEAMK---------------DENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 157 ~~~vG~~~~~~~i~~~L~---------------~~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
..++|.+..++.+...+. ......+-++|..|+|||++|+.+.+..
T Consensus 15 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 15 DYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp HHCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred hhccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 357999999998888773 0133568899999999999999998764
No 282
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=84.90 E-value=0.9 Score=47.94 Aligned_cols=46 Identities=22% Similarity=0.177 Sum_probs=35.4
Q ss_pred ccccchhHHHHHHHHHHh------------------------------cCCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 157 YAFKSRESTMKDIMEAMK------------------------------DENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 157 ~~~vG~~~~~~~i~~~L~------------------------------~~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
..++|.++.++.+...+. ......+-++|..|+|||++|+.+.+..
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHh
Confidence 458899988888877762 0122457799999999999999998754
No 283
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=84.87 E-value=0.88 Score=46.42 Aligned_cols=26 Identities=31% Similarity=0.358 Sum_probs=22.2
Q ss_pred CccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 177 NVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 177 ~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
...+++|.|..|+||||+++.+....
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34589999999999999999987654
No 284
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=84.79 E-value=0.57 Score=42.75 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=21.3
Q ss_pred ccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 178 VSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 178 ~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
..+|.+.|+.|+||||+|+.+.+..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999987653
No 285
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=84.70 E-value=0.56 Score=46.28 Aligned_cols=26 Identities=19% Similarity=0.345 Sum_probs=21.9
Q ss_pred CCccEEEEEeCCCCchhHHHHHHHHH
Q 003090 176 ENVSITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 176 ~~~~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
....+|+|.|..|.||||+|+.+...
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 34468999999999999999988764
No 286
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=84.69 E-value=0.47 Score=45.61 Aligned_cols=23 Identities=43% Similarity=0.687 Sum_probs=20.8
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.+++|+|..|+|||||++.+...
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 58999999999999999998764
No 287
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.62 E-value=1.1 Score=47.54 Aligned_cols=49 Identities=24% Similarity=0.249 Sum_probs=38.2
Q ss_pred ccccccchhHHHHHHHHHHh-------------cCCccEEEEEeCCCCchhHHHHHHHHHHh
Q 003090 155 GVYAFKSRESTMKDIMEAMK-------------DENVSITGICGMGGVGKTTLVKEIQKQAK 203 (848)
Q Consensus 155 ~~~~~vG~~~~~~~i~~~L~-------------~~~~~vi~i~G~gG~GKTtla~~v~~~~~ 203 (848)
...+|.|.++.++++.+.+. -...+=+=.+|..|.|||++|++|.+...
T Consensus 170 ~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~ 231 (428)
T 4b4t_K 170 TYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTK 231 (428)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHT
T ss_pred CHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 45679999999988887664 12234467899999999999999998763
No 288
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=84.56 E-value=0.6 Score=43.44 Aligned_cols=24 Identities=29% Similarity=0.315 Sum_probs=21.0
Q ss_pred ccEEEEEeCCCCchhHHHHHHHHH
Q 003090 178 VSITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 178 ~~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
..+|.++|+.|+||||+++.+.+.
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 357999999999999999988764
No 289
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=84.56 E-value=1 Score=48.87 Aligned_cols=47 Identities=17% Similarity=0.191 Sum_probs=35.9
Q ss_pred cccccchhHHHHHHHHHHh---cC--CccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 156 VYAFKSRESTMKDIMEAMK---DE--NVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 156 ~~~~vG~~~~~~~i~~~L~---~~--~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
...++|.++.++.+..++. .. ..+-+=++|..|.|||++|+.+.+..
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l 87 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQEL 87 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHh
Confidence 3679999998886555443 22 22457799999999999999999875
No 290
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=84.45 E-value=0.57 Score=46.25 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=20.9
Q ss_pred cEEEEEeCCCCchhHHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
.++.|+|+.|+||||+|+.+....
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 368899999999999999997654
No 291
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=84.33 E-value=1.1 Score=48.44 Aligned_cols=47 Identities=21% Similarity=0.297 Sum_probs=35.6
Q ss_pred cccccchhHHHHHHHHHHh---cC---------CccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 156 VYAFKSRESTMKDIMEAMK---DE---------NVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 156 ~~~~vG~~~~~~~i~~~L~---~~---------~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
-.+++|.++.++++.+... .. -..-+-++|..|.||||+|+.+.+..
T Consensus 15 f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 15 FKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 4679999988877766543 11 11336799999999999999999865
No 292
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=84.32 E-value=0.69 Score=47.82 Aligned_cols=44 Identities=14% Similarity=0.171 Sum_probs=36.4
Q ss_pred ccccchhHHHHHHHHHHhcCCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 157 YAFKSRESTMKDIMEAMKDENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 157 ~~~vG~~~~~~~i~~~L~~~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
..++|.++.++.+...+.... -+-++|..|+|||++|+.+.+..
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~~--~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTGG--HILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC--CEEEESCCCHHHHHHHHHHHHHT
T ss_pred cceeCcHHHHHHHHHHHHcCC--eEEEECCCCCcHHHHHHHHHHHh
Confidence 468899999988888877543 57789999999999999998754
No 293
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.26 E-value=1.2 Score=47.41 Aligned_cols=49 Identities=16% Similarity=0.190 Sum_probs=38.2
Q ss_pred ccccccchhHHHHHHHHHHh-------------cCCccEEEEEeCCCCchhHHHHHHHHHHh
Q 003090 155 GVYAFKSRESTMKDIMEAMK-------------DENVSITGICGMGGVGKTTLVKEIQKQAK 203 (848)
Q Consensus 155 ~~~~~vG~~~~~~~i~~~L~-------------~~~~~vi~i~G~gG~GKTtla~~v~~~~~ 203 (848)
...+|.|.++.++++.+.+. -...+=|=++|..|.|||++|++|.+...
T Consensus 179 ~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~ 240 (437)
T 4b4t_L 179 TFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIG 240 (437)
T ss_dssp CSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 45678999999988877664 12234567899999999999999998763
No 294
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.18 E-value=1.2 Score=47.53 Aligned_cols=49 Identities=18% Similarity=0.212 Sum_probs=38.4
Q ss_pred ccccccchhHHHHHHHHHHh-------------cCCccEEEEEeCCCCchhHHHHHHHHHHh
Q 003090 155 GVYAFKSRESTMKDIMEAMK-------------DENVSITGICGMGGVGKTTLVKEIQKQAK 203 (848)
Q Consensus 155 ~~~~~vG~~~~~~~i~~~L~-------------~~~~~vi~i~G~gG~GKTtla~~v~~~~~ 203 (848)
...+|.|.++.++++.+.+. -...+=|=++|..|.|||.+|++|.+...
T Consensus 179 t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~ 240 (434)
T 4b4t_M 179 TYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTN 240 (434)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhC
Confidence 45679999999998887653 12234567899999999999999998763
No 295
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=84.14 E-value=0.51 Score=46.59 Aligned_cols=25 Identities=28% Similarity=0.437 Sum_probs=21.9
Q ss_pred CccEEEEEeCCCCchhHHHHHHHHH
Q 003090 177 NVSITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 177 ~~~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.-.+|+|+|+.|.||||+++.+...
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~ 50 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAES 50 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999854
No 296
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=84.10 E-value=0.6 Score=45.55 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=22.0
Q ss_pred CCccEEEEEeCCCCchhHHHHHHHHH
Q 003090 176 ENVSITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 176 ~~~~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.. .+++|+|..|.|||||.+.+.--
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCC
Confidence 45 79999999999999999998753
No 297
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=83.99 E-value=0.54 Score=43.69 Aligned_cols=24 Identities=25% Similarity=0.454 Sum_probs=20.7
Q ss_pred cEEEEEeCCCCchhHHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
.+|.|+|+.|+||||+|+.+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 368999999999999999987653
No 298
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=83.91 E-value=0.67 Score=43.43 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=21.7
Q ss_pred CccEEEEEeCCCCchhHHHHHHHHH
Q 003090 177 NVSITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 177 ~~~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.-.++.|+|..|+|||||++.+...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhh
Confidence 3468999999999999999998864
No 299
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=83.87 E-value=0.63 Score=43.49 Aligned_cols=25 Identities=36% Similarity=0.429 Sum_probs=21.8
Q ss_pred cEEEEEeCCCCchhHHHHHHHHHHh
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQAK 203 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~~~ 203 (848)
.+++|+|..|+||||+++.+....+
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 3689999999999999999987654
No 300
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=83.81 E-value=0.68 Score=43.46 Aligned_cols=25 Identities=28% Similarity=0.329 Sum_probs=21.7
Q ss_pred ccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 178 VSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 178 ~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
..+|.++|+.|+||||+|+.+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999987643
No 301
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=83.69 E-value=0.6 Score=44.40 Aligned_cols=23 Identities=35% Similarity=0.239 Sum_probs=21.0
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.+++|+|..|.|||||++.+.-.
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999865
No 302
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=83.62 E-value=0.76 Score=43.47 Aligned_cols=25 Identities=32% Similarity=0.412 Sum_probs=21.6
Q ss_pred CccEEEEEeCCCCchhHHHHHHHHH
Q 003090 177 NVSITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 177 ~~~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
...+|.+.|+.|+||||+++.+.+.
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4468999999999999999998754
No 303
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=83.61 E-value=1.2 Score=48.52 Aligned_cols=47 Identities=15% Similarity=0.186 Sum_probs=37.6
Q ss_pred cccccchhHHHHHHHHHHh-------------cCCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 156 VYAFKSRESTMKDIMEAMK-------------DENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 156 ~~~~vG~~~~~~~i~~~L~-------------~~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
...++|.+..++.+.+++. .....-+=++|..|.|||++|+.+.+..
T Consensus 203 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp GGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 3569999999999888765 1333457899999999999999997653
No 304
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=83.61 E-value=0.62 Score=45.74 Aligned_cols=26 Identities=23% Similarity=0.368 Sum_probs=22.2
Q ss_pred CccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 177 NVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 177 ~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
.-.+|+|.|..|.||||+++.+....
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999987643
No 305
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=83.60 E-value=43 Score=34.46 Aligned_cols=24 Identities=33% Similarity=0.491 Sum_probs=20.3
Q ss_pred CCccEEEEEeCCCCchhHHHHHHH
Q 003090 176 ENVSITGICGMGGVGKTTLVKEIQ 199 (848)
Q Consensus 176 ~~~~vi~i~G~gG~GKTtla~~v~ 199 (848)
.....+.++|..|+|||||...+.
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~ 188 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALT 188 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHh
Confidence 345689999999999999987765
No 306
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=83.59 E-value=0.67 Score=43.42 Aligned_cols=24 Identities=25% Similarity=0.254 Sum_probs=20.9
Q ss_pred cEEEEEeCCCCchhHHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
.+|.+.|+.|+||||+|+.+.+..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999887643
No 307
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=83.58 E-value=6.6 Score=46.36 Aligned_cols=46 Identities=20% Similarity=0.335 Sum_probs=37.1
Q ss_pred ccccchhHHHHHHHHHHhc---------CCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 157 YAFKSRESTMKDIMEAMKD---------ENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 157 ~~~vG~~~~~~~i~~~L~~---------~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
..++|.+..++.+...+.. .....+-++|..|+|||++|+.+.+..
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999888887752 123578899999999999999998765
No 308
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=83.58 E-value=0.7 Score=43.49 Aligned_cols=24 Identities=29% Similarity=0.309 Sum_probs=21.3
Q ss_pred cEEEEEeCCCCchhHHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
.+|.+.|+.|+||||+|+.+....
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999997654
No 309
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=83.51 E-value=0.68 Score=43.02 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=20.8
Q ss_pred cEEEEEeCCCCchhHHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
..|.++|+.|+||||+++.+.+..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999987643
No 310
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=83.48 E-value=0.71 Score=43.24 Aligned_cols=25 Identities=24% Similarity=0.501 Sum_probs=21.6
Q ss_pred CccEEEEEeCCCCchhHHHHHHHHH
Q 003090 177 NVSITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 177 ~~~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
...+|++.|+.|.||||+++.+-+.
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999988764
No 311
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=83.44 E-value=0.66 Score=42.26 Aligned_cols=23 Identities=17% Similarity=0.157 Sum_probs=20.3
Q ss_pred EEEEEeCCCCchhHHHHHHHHHH
Q 003090 180 ITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 180 vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
.|.+.|+.|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999988653
No 312
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=83.43 E-value=0.61 Score=45.03 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=20.5
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.+++|+|..|.|||||.+.+..-
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999988743
No 313
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=83.31 E-value=0.77 Score=42.16 Aligned_cols=25 Identities=28% Similarity=0.500 Sum_probs=22.1
Q ss_pred ccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 178 VSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 178 ~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
..++.|+|..|+||||+++.+....
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 5689999999999999999988754
No 314
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=83.29 E-value=0.42 Score=43.82 Aligned_cols=26 Identities=35% Similarity=0.475 Sum_probs=22.6
Q ss_pred cEEEEEeCCCCchhHHHHHHHHHHhh
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQAKE 204 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~~~~ 204 (848)
.+++|+|..|.|||||++.+......
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 57999999999999999999876543
No 315
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=83.28 E-value=0.94 Score=44.67 Aligned_cols=25 Identities=32% Similarity=0.307 Sum_probs=21.6
Q ss_pred ccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 178 VSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 178 ~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
..+|.++|..|.||||+|+.+....
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4678999999999999999987643
No 316
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=83.21 E-value=0.61 Score=45.40 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=20.1
Q ss_pred cEEEEEeCCCCchhHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQK 200 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~ 200 (848)
.+++|+|..|.|||||.+.+.-
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 6899999999999999998874
No 317
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=83.18 E-value=1.3 Score=48.28 Aligned_cols=47 Identities=21% Similarity=0.304 Sum_probs=35.2
Q ss_pred cccccchhHHHHHHHHHHh---cC------C---ccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 156 VYAFKSRESTMKDIMEAMK---DE------N---VSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 156 ~~~~vG~~~~~~~i~~~L~---~~------~---~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
..+++|.++.++++.+... .. + ..-+.++|..|.||||||+.+....
T Consensus 30 f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~ 88 (499)
T 2dhr_A 30 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA 88 (499)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred HHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4679999988877666543 11 1 1238899999999999999999765
No 318
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=83.17 E-value=0.63 Score=42.62 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=20.8
Q ss_pred cEEEEEeCCCCchhHHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
.+|.+.|+.|+||||+|+.+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999987653
No 319
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=83.16 E-value=0.69 Score=44.42 Aligned_cols=25 Identities=20% Similarity=0.383 Sum_probs=21.8
Q ss_pred ccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 178 VSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 178 ~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
-.+++|+|..|+|||||.+.+....
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC
Confidence 3689999999999999999988653
No 320
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=83.12 E-value=0.62 Score=43.18 Aligned_cols=23 Identities=35% Similarity=0.421 Sum_probs=16.5
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.+|.+.|+.|+||||+|+.+.+.
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999998754
No 321
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=83.06 E-value=0.9 Score=46.08 Aligned_cols=27 Identities=26% Similarity=0.460 Sum_probs=23.4
Q ss_pred CccEEEEEeCCCCchhHHHHHHHHHHh
Q 003090 177 NVSITGICGMGGVGKTTLVKEIQKQAK 203 (848)
Q Consensus 177 ~~~vi~i~G~gG~GKTtla~~v~~~~~ 203 (848)
.-.+++|+|.+|+||||+++.+.....
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~ 127 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ 127 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 457999999999999999999887654
No 322
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=83.03 E-value=0.73 Score=43.13 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=20.7
Q ss_pred EEEEEeCCCCchhHHHHHHHHHH
Q 003090 180 ITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 180 vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
+|.+.|+.|+||||+++.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998754
No 323
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.00 E-value=1.2 Score=46.61 Aligned_cols=49 Identities=18% Similarity=0.214 Sum_probs=37.7
Q ss_pred ccccccchhHHHHHHHHHHh-------------cCCccEEEEEeCCCCchhHHHHHHHHHHh
Q 003090 155 GVYAFKSRESTMKDIMEAMK-------------DENVSITGICGMGGVGKTTLVKEIQKQAK 203 (848)
Q Consensus 155 ~~~~~vG~~~~~~~i~~~L~-------------~~~~~vi~i~G~gG~GKTtla~~v~~~~~ 203 (848)
...+|.|.++.++++.+.+. -...+=+=.+|..|.|||.+|++|.+...
T Consensus 146 ~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~ 207 (405)
T 4b4t_J 146 TYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTD 207 (405)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHT
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhC
Confidence 45678999999988877654 12224466899999999999999998763
No 324
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=82.91 E-value=0.73 Score=43.87 Aligned_cols=25 Identities=16% Similarity=0.343 Sum_probs=22.0
Q ss_pred cEEEEEeCCCCchhHHHHHHHHHHh
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQAK 203 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~~~ 203 (848)
.+|.|.|+.|+||||+|+.+.+...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 4789999999999999999987653
No 325
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=82.88 E-value=0.78 Score=42.87 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=21.1
Q ss_pred cEEEEEeCCCCchhHHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
.+|.+.|+.|+||||+|+.+....
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999987643
No 326
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=82.85 E-value=0.68 Score=45.91 Aligned_cols=23 Identities=35% Similarity=0.569 Sum_probs=20.9
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.+|.++|+.|+||||+|+.+...
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHH
Confidence 57899999999999999999875
No 327
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=82.62 E-value=0.66 Score=46.93 Aligned_cols=27 Identities=22% Similarity=0.305 Sum_probs=22.7
Q ss_pred CccEEEEEeCCCCchhHHHHHHHHHHh
Q 003090 177 NVSITGICGMGGVGKTTLVKEIQKQAK 203 (848)
Q Consensus 177 ~~~vi~i~G~gG~GKTtla~~v~~~~~ 203 (848)
.-.++.++|.+|+||||++..+.....
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 346999999999999999988876554
No 328
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=82.61 E-value=1.4 Score=42.04 Aligned_cols=43 Identities=23% Similarity=0.112 Sum_probs=30.7
Q ss_pred cEEEEEeCCCCchhHHHHHHHHHHhhccccCcEEEEEeccCCchhHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQAKEMKMFDDVAMAVVSQTPSITKIQ 226 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~ 226 (848)
.++.|+|.+|+||||++..+.. . .-..++|+.....++..++.
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~-~----~~~~v~~i~~~~~~~~~~~~ 63 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL-L----SGKKVAYVDTEGGFSPERLV 63 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH-H----HCSEEEEEESSCCCCHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH-H----cCCcEEEEECCCCCCHHHHH
Confidence 6899999999999999998876 2 11356676655544554444
No 329
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=82.58 E-value=0.65 Score=45.60 Aligned_cols=24 Identities=33% Similarity=0.376 Sum_probs=21.2
Q ss_pred cEEEEEeCCCCchhHHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
.+|.|+|+.|.||||+++.+....
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhc
Confidence 579999999999999999998643
No 330
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=82.58 E-value=1.3 Score=45.43 Aligned_cols=37 Identities=30% Similarity=0.320 Sum_probs=26.9
Q ss_pred HHHHHHHhcC--CccEEEEEeCCCCchhHHHHHHHHHHh
Q 003090 167 KDIMEAMKDE--NVSITGICGMGGVGKTTLVKEIQKQAK 203 (848)
Q Consensus 167 ~~i~~~L~~~--~~~vi~i~G~gG~GKTtla~~v~~~~~ 203 (848)
..+..+.... ....+-|+|..|+||||+|+.+.+...
T Consensus 24 ~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~ 62 (324)
T 1l8q_A 24 EVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAK 62 (324)
T ss_dssp HHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHH
Confidence 3444444332 245788999999999999999998664
No 331
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=82.35 E-value=1.3 Score=49.29 Aligned_cols=46 Identities=30% Similarity=0.359 Sum_probs=36.7
Q ss_pred ccccchhHHHHHHHHHHh------cCCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 157 YAFKSRESTMKDIMEAMK------DENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 157 ~~~vG~~~~~~~i~~~L~------~~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
..++|.++-++.+.+.+. ...-.++.++|..|+||||+|+.+....
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 458899888887766554 2234689999999999999999998765
No 332
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=82.32 E-value=0.44 Score=45.58 Aligned_cols=24 Identities=33% Similarity=0.594 Sum_probs=21.2
Q ss_pred EEEEEeCCCCchhHHHHHHHHHHh
Q 003090 180 ITGICGMGGVGKTTLVKEIQKQAK 203 (848)
Q Consensus 180 vi~i~G~gG~GKTtla~~v~~~~~ 203 (848)
+|.|+|..|+||||+++.+.....
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999987653
No 333
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=82.24 E-value=0.81 Score=43.21 Aligned_cols=24 Identities=21% Similarity=0.220 Sum_probs=21.1
Q ss_pred cEEEEEeCCCCchhHHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
.+|.++|+.|+||||+|+.+....
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999987654
No 334
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=82.18 E-value=1.4 Score=47.53 Aligned_cols=45 Identities=22% Similarity=0.228 Sum_probs=30.3
Q ss_pred ccchhHH--HHHHHHHHhcCC-ccEEEEEeCCCCchhHHHHHHHHHHh
Q 003090 159 FKSREST--MKDIMEAMKDEN-VSITGICGMGGVGKTTLVKEIQKQAK 203 (848)
Q Consensus 159 ~vG~~~~--~~~i~~~L~~~~-~~vi~i~G~gG~GKTtla~~v~~~~~ 203 (848)
++|.... ...+..+..... ...+-++|..|+||||||+.+.+...
T Consensus 108 v~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~ 155 (440)
T 2z4s_A 108 VVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVV 155 (440)
T ss_dssp CCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4465433 233333333322 56788999999999999999998653
No 335
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=82.17 E-value=0.7 Score=45.01 Aligned_cols=23 Identities=22% Similarity=0.546 Sum_probs=20.6
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.+++|+|..|.|||||.+.+..-
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999988743
No 336
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=82.11 E-value=0.81 Score=42.26 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=21.2
Q ss_pred cEEEEEeCCCCchhHHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
.+|.++|+.|.||||+++.+....
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 578999999999999999998754
No 337
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=81.98 E-value=0.71 Score=45.78 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=20.5
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.+++|+|..|.|||||.+.+.--
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 68999999999999999988743
No 338
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=81.90 E-value=0.71 Score=46.04 Aligned_cols=22 Identities=41% Similarity=0.655 Sum_probs=20.1
Q ss_pred cEEEEEeCCCCchhHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQK 200 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~ 200 (848)
.+++|+|..|.|||||.+.+.-
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 5899999999999999998874
No 339
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=81.75 E-value=0.9 Score=43.25 Aligned_cols=25 Identities=24% Similarity=0.230 Sum_probs=22.1
Q ss_pred cEEEEEeCCCCchhHHHHHHHHHHh
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQAK 203 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~~~ 203 (848)
.+|.+.|+.|+||||+++.+.+...
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999987653
No 340
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=81.64 E-value=1.4 Score=45.91 Aligned_cols=37 Identities=24% Similarity=0.448 Sum_probs=27.8
Q ss_pred HHHHHHHHh--cCCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 166 MKDIMEAMK--DENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 166 ~~~i~~~L~--~~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
...+.+.+. ..+..+|+|+|.+|+||||++..+....
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 344555554 4567799999999999999998876554
No 341
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=81.62 E-value=1.2 Score=48.66 Aligned_cols=44 Identities=11% Similarity=0.147 Sum_probs=36.1
Q ss_pred ccccchhHHHHHHHHHHhcCCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 157 YAFKSRESTMKDIMEAMKDENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 157 ~~~vG~~~~~~~i~~~L~~~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
..++|.++.++.+...+.... -+-++|..|+|||++|+.+.+..
T Consensus 22 ~~ivGq~~~i~~l~~al~~~~--~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSGE--SVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHTC--EEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhhHHHHHHHHHHHHHHhcCC--eeEeecCchHHHHHHHHHHHHHH
Confidence 468999999988887776543 56789999999999999998644
No 342
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=81.60 E-value=0.79 Score=45.07 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=20.7
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.+++|+|..|.|||||.+.+..-
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999998853
No 343
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=81.56 E-value=0.91 Score=43.31 Aligned_cols=26 Identities=15% Similarity=0.224 Sum_probs=22.5
Q ss_pred ccEEEEEeCCCCchhHHHHHHHHHHh
Q 003090 178 VSITGICGMGGVGKTTLVKEIQKQAK 203 (848)
Q Consensus 178 ~~vi~i~G~gG~GKTtla~~v~~~~~ 203 (848)
-.+|.|.|+.|+||||+++.+.+...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35899999999999999999987653
No 344
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=81.49 E-value=0.98 Score=45.77 Aligned_cols=26 Identities=31% Similarity=0.456 Sum_probs=22.7
Q ss_pred ccEEEEEeCCCCchhHHHHHHHHHHh
Q 003090 178 VSITGICGMGGVGKTTLVKEIQKQAK 203 (848)
Q Consensus 178 ~~vi~i~G~gG~GKTtla~~v~~~~~ 203 (848)
-.+++++|..|+||||+++.+.....
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l~ 125 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRLK 125 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 36999999999999999999887654
No 345
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=81.45 E-value=0.86 Score=43.45 Aligned_cols=28 Identities=25% Similarity=0.331 Sum_probs=23.3
Q ss_pred CCccEEEEEeCCCCchhHHHHHHHHHHh
Q 003090 176 ENVSITGICGMGGVGKTTLVKEIQKQAK 203 (848)
Q Consensus 176 ~~~~vi~i~G~gG~GKTtla~~v~~~~~ 203 (848)
..-.+|.++|+.|.||||+++.+.....
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3446899999999999999999987543
No 346
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=81.43 E-value=0.76 Score=45.64 Aligned_cols=23 Identities=30% Similarity=0.535 Sum_probs=20.5
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.+++|+|..|.|||||++.+..-
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 68999999999999999988743
No 347
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.39 E-value=1.6 Score=46.63 Aligned_cols=48 Identities=13% Similarity=0.171 Sum_probs=37.4
Q ss_pred cccccchhHHHHHHHHHHh-------------cCCccEEEEEeCCCCchhHHHHHHHHHHh
Q 003090 156 VYAFKSRESTMKDIMEAMK-------------DENVSITGICGMGGVGKTTLVKEIQKQAK 203 (848)
Q Consensus 156 ~~~~vG~~~~~~~i~~~L~-------------~~~~~vi~i~G~gG~GKTtla~~v~~~~~ 203 (848)
..+|.|.++.++++.+.+. -...+=|=++|..|.|||++|++|.+...
T Consensus 208 ~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~ 268 (467)
T 4b4t_H 208 YSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTD 268 (467)
T ss_dssp CSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHT
T ss_pred HHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccC
Confidence 3578999999988877653 12334566899999999999999998763
No 348
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=81.35 E-value=0.6 Score=45.36 Aligned_cols=23 Identities=35% Similarity=0.466 Sum_probs=15.7
Q ss_pred cEEEEEeCCCCchhHHHHHHH-HH
Q 003090 179 SITGICGMGGVGKTTLVKEIQ-KQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~-~~ 201 (848)
.+++++|..|+||||+++.+. ..
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 589999999999999999887 54
No 349
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=81.33 E-value=0.78 Score=44.78 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=20.5
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.+++|+|..|.|||||.+.+.--
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999988743
No 350
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=81.31 E-value=0.78 Score=45.44 Aligned_cols=24 Identities=21% Similarity=0.362 Sum_probs=20.9
Q ss_pred ccEEEEEeCCCCchhHHHHHHHHH
Q 003090 178 VSITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 178 ~~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
-.+++|+|..|.|||||.+.+.--
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcC
Confidence 368999999999999999988743
No 351
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=81.28 E-value=0.93 Score=42.52 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=20.6
Q ss_pred EEEEEeCCCCchhHHHHHHHHHH
Q 003090 180 ITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 180 vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
.|.+.|..|+||||+++.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998754
No 352
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=81.24 E-value=0.81 Score=44.92 Aligned_cols=22 Identities=27% Similarity=0.344 Sum_probs=20.2
Q ss_pred cEEEEEeCCCCchhHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQK 200 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~ 200 (848)
.+++|+|..|+|||||++.+..
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHH
Confidence 6899999999999999998874
No 353
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=81.23 E-value=0.79 Score=44.37 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=20.6
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.+++|+|..|.|||||.+.+...
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999998754
No 354
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=81.19 E-value=0.71 Score=44.10 Aligned_cols=23 Identities=39% Similarity=0.648 Sum_probs=20.4
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.+++|+|..|.|||||.+.+...
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 57999999999999999998743
No 355
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=81.15 E-value=1.3 Score=51.90 Aligned_cols=48 Identities=17% Similarity=0.214 Sum_probs=38.1
Q ss_pred ccccccchhHHHHHHHHHHhc-------------CCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 155 GVYAFKSRESTMKDIMEAMKD-------------ENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 155 ~~~~~vG~~~~~~~i~~~L~~-------------~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
....++|.++.++.+.+++.. ..-..+-++|..|.||||+|+.+.+..
T Consensus 202 ~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l 262 (806)
T 1ypw_A 202 GYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp CGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTT
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 446799999999888887751 223568999999999999999997653
No 356
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=81.13 E-value=0.87 Score=46.46 Aligned_cols=27 Identities=30% Similarity=0.294 Sum_probs=22.9
Q ss_pred CCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 176 ENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 176 ~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
..-.+++|+|..|.||||+++.+....
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 344699999999999999999988654
No 357
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=81.12 E-value=0.83 Score=45.41 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=20.9
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.+++|+|..|.|||||.+.+..-
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999998853
No 358
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=81.08 E-value=0.8 Score=45.26 Aligned_cols=23 Identities=39% Similarity=0.507 Sum_probs=20.5
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.+++|+|..|.|||||.+.+..-
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999988743
No 359
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=81.00 E-value=2 Score=41.93 Aligned_cols=27 Identities=22% Similarity=0.159 Sum_probs=22.5
Q ss_pred CCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 176 ENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 176 ~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
....+|.+.|..|+||||+|+.+.+..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 345689999999999999999987543
No 360
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=80.98 E-value=0.9 Score=43.57 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=19.9
Q ss_pred cEEEEEeCCCCchhHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQK 200 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~ 200 (848)
.+|+|.|+.|.||||+++.+..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999864
No 361
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=80.94 E-value=1.7 Score=46.80 Aligned_cols=26 Identities=31% Similarity=0.491 Sum_probs=22.5
Q ss_pred ccEEEEEeCCCCchhHHHHHHHHHHh
Q 003090 178 VSITGICGMGGVGKTTLVKEIQKQAK 203 (848)
Q Consensus 178 ~~vi~i~G~gG~GKTtla~~v~~~~~ 203 (848)
-.+++|+|..|+||||+++.+.....
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll~ 318 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQFE 318 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHHHhh
Confidence 36899999999999999999886654
No 362
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=80.86 E-value=1.3 Score=47.37 Aligned_cols=46 Identities=20% Similarity=0.281 Sum_probs=36.0
Q ss_pred ccccchhHHHHHHHHHHhc--------------CCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 157 YAFKSRESTMKDIMEAMKD--------------ENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 157 ~~~vG~~~~~~~i~~~L~~--------------~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
..|+|.++.++.+...+.. ...+-+-++|..|+||||+|+.+....
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHc
Confidence 4689999988888766631 123457899999999999999998765
No 363
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.85 E-value=2 Score=45.24 Aligned_cols=49 Identities=24% Similarity=0.289 Sum_probs=38.1
Q ss_pred ccccccchhHHHHHHHHHHh-------------cCCccEEEEEeCCCCchhHHHHHHHHHHh
Q 003090 155 GVYAFKSRESTMKDIMEAMK-------------DENVSITGICGMGGVGKTTLVKEIQKQAK 203 (848)
Q Consensus 155 ~~~~~vG~~~~~~~i~~~L~-------------~~~~~vi~i~G~gG~GKTtla~~v~~~~~ 203 (848)
...+|.|.++.++++.+.+. -...+=|=.+|..|.|||.+|++|.+...
T Consensus 180 ~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~ 241 (437)
T 4b4t_I 180 SYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTS 241 (437)
T ss_dssp CGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHT
T ss_pred cceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhC
Confidence 45678899999988877654 12234577899999999999999998763
No 364
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=80.83 E-value=0.98 Score=43.62 Aligned_cols=23 Identities=30% Similarity=0.343 Sum_probs=20.5
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
..|.++|+.|+||||+|+.+.+.
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999998754
No 365
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=80.81 E-value=0.89 Score=43.91 Aligned_cols=23 Identities=35% Similarity=0.449 Sum_probs=21.0
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.+++|+|..|+|||||++.+...
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999864
No 366
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=80.55 E-value=0.86 Score=44.68 Aligned_cols=23 Identities=48% Similarity=0.713 Sum_probs=20.5
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.+++|+|..|.|||||.+.+..-
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999988743
No 367
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=80.52 E-value=1.1 Score=43.03 Aligned_cols=24 Identities=25% Similarity=0.263 Sum_probs=21.0
Q ss_pred cEEEEEeCCCCchhHHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
..|.++|+.|+||||+|+.+.+..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999997653
No 368
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=80.38 E-value=2.2 Score=41.47 Aligned_cols=47 Identities=17% Similarity=0.062 Sum_probs=31.4
Q ss_pred cEEEEEeCCCCchhHHHHHHHHHHhhcc----ccCcEEEEEeccCCchhHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQAKEMK----MFDDVAMAVVSQTPSITKI 225 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~l 225 (848)
.++.|+|..|+||||++..+........ .-..++|+.....++..++
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~ 75 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERL 75 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHH
Confidence 6899999999999999998876432211 1235677765554444433
No 369
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=80.33 E-value=0.88 Score=44.86 Aligned_cols=23 Identities=39% Similarity=0.574 Sum_probs=20.6
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.+++|+|..|.|||||.+.+.--
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 68999999999999999988743
No 370
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=80.32 E-value=0.87 Score=45.70 Aligned_cols=22 Identities=23% Similarity=0.706 Sum_probs=20.2
Q ss_pred ccEEEEEeCCCCchhHHHHHHH
Q 003090 178 VSITGICGMGGVGKTTLVKEIQ 199 (848)
Q Consensus 178 ~~vi~i~G~gG~GKTtla~~v~ 199 (848)
..+|+|.|+.|+||||+|+.+-
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999887
No 371
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=80.28 E-value=0.88 Score=44.53 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=20.5
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.+++|+|..|.|||||.+.+..-
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 68999999999999999988743
No 372
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=80.25 E-value=1 Score=42.58 Aligned_cols=23 Identities=26% Similarity=0.328 Sum_probs=20.5
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.+|.+.|+.|+||||+++.+.+.
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 57999999999999999998754
No 373
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=80.17 E-value=0.9 Score=44.57 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=20.5
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.+++|+|..|.|||||.+.+..-
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 58999999999999999988743
No 374
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=80.05 E-value=0.91 Score=44.92 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=20.7
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.+++|+|..|.|||||.+.+..-
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 58999999999999999998753
No 375
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=79.78 E-value=1.1 Score=41.85 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=20.3
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
-.++++|..|+|||||.+.+...
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 47899999999999999988754
No 376
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=79.72 E-value=0.94 Score=45.12 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=21.1
Q ss_pred ccEEEEEeCCCCchhHHHHHHHHH
Q 003090 178 VSITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 178 ~~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
-.+++|+|..|.|||||.+.+..-
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 368999999999999999998754
No 377
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=79.66 E-value=0.95 Score=44.97 Aligned_cols=23 Identities=26% Similarity=0.357 Sum_probs=20.5
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.+++|+|..|.|||||.+.+.--
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 58999999999999999998743
No 378
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=79.65 E-value=1.1 Score=42.77 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=19.7
Q ss_pred EEEEEeCCCCchhHHHHHHHHHH
Q 003090 180 ITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 180 vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
.|.|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999987543
No 379
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=79.44 E-value=0.96 Score=45.23 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=20.5
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.+++|+|..|.|||||.+.+...
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 58999999999999999988743
No 380
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=79.36 E-value=1.1 Score=41.50 Aligned_cols=22 Identities=36% Similarity=0.521 Sum_probs=18.9
Q ss_pred EEEEEeCCCCchhHHHHHHHHH
Q 003090 180 ITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 180 vi~i~G~gG~GKTtla~~v~~~ 201 (848)
-|-|+|..|+|||||++.+...
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 3679999999999999988754
No 381
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=79.20 E-value=2 Score=43.71 Aligned_cols=39 Identities=15% Similarity=0.261 Sum_probs=28.8
Q ss_pred HHHHHHHHHhcC---CccEEEEEeCCCCchhHHHHHHHHHHh
Q 003090 165 TMKDIMEAMKDE---NVSITGICGMGGVGKTTLVKEIQKQAK 203 (848)
Q Consensus 165 ~~~~i~~~L~~~---~~~vi~i~G~gG~GKTtla~~v~~~~~ 203 (848)
.++.+.+++... ....+-++|..|+|||+||+++.+...
T Consensus 136 ~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 136 AFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp HHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 344455555542 246788999999999999999998764
No 382
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=79.07 E-value=1 Score=44.39 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=20.5
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.+++|+|..|.|||||.+.+...
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999988753
No 383
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=78.92 E-value=1.3 Score=45.90 Aligned_cols=26 Identities=31% Similarity=0.456 Sum_probs=22.7
Q ss_pred ccEEEEEeCCCCchhHHHHHHHHHHh
Q 003090 178 VSITGICGMGGVGKTTLVKEIQKQAK 203 (848)
Q Consensus 178 ~~vi~i~G~gG~GKTtla~~v~~~~~ 203 (848)
-.+++++|..|+||||+++.+.....
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~ 182 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLK 182 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhcc
Confidence 36899999999999999999887654
No 384
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=78.85 E-value=1.2 Score=42.24 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=20.6
Q ss_pred EEEEEeCCCCchhHHHHHHHHHH
Q 003090 180 ITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 180 vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
+|+|.|..|.||||+|+.+....
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 89999999999999999987643
No 385
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=78.85 E-value=1.2 Score=42.50 Aligned_cols=22 Identities=27% Similarity=0.336 Sum_probs=19.2
Q ss_pred EEEEEeCCCCchhHHHHHHHHH
Q 003090 180 ITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 180 vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.|.|.|..|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998653
No 386
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=78.62 E-value=1.3 Score=42.82 Aligned_cols=24 Identities=17% Similarity=0.447 Sum_probs=21.3
Q ss_pred cEEEEEeCCCCchhHHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
.+|.|.|..|.||||+++.+....
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999987654
No 387
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=78.51 E-value=1.2 Score=45.50 Aligned_cols=23 Identities=35% Similarity=0.393 Sum_probs=20.7
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.+|.|+|..|+||||+|+.+...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 48999999999999999988764
No 388
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=78.50 E-value=1.1 Score=44.23 Aligned_cols=25 Identities=36% Similarity=0.434 Sum_probs=21.2
Q ss_pred ccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 178 VSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 178 ~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
..++.+.|.||+||||++..+....
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 4678899999999999998887554
No 389
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=78.47 E-value=1.1 Score=42.95 Aligned_cols=24 Identities=25% Similarity=0.184 Sum_probs=21.0
Q ss_pred cEEEEEeCCCCchhHHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
..|.+.|+.|+||||+++.+.+..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999998654
No 390
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=78.36 E-value=1.1 Score=45.94 Aligned_cols=25 Identities=36% Similarity=0.612 Sum_probs=22.1
Q ss_pred CccEEEEEeCCCCchhHHHHHHHHH
Q 003090 177 NVSITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 177 ~~~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
...++.|.|+.|.||||+.+.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4678999999999999999998754
No 391
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=78.10 E-value=1.3 Score=44.15 Aligned_cols=23 Identities=35% Similarity=0.521 Sum_probs=20.8
Q ss_pred EEEEEeCCCCchhHHHHHHHHHH
Q 003090 180 ITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 180 vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
.++++|..|+|||||.+.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999765
No 392
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=77.82 E-value=1.1 Score=45.28 Aligned_cols=25 Identities=20% Similarity=0.411 Sum_probs=19.0
Q ss_pred CccEEEEEeCCCCchhHHHHHHHHH
Q 003090 177 NVSITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 177 ~~~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
...+|+|.|..|.||||+|+.+.+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999998764
No 393
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=77.55 E-value=2.3 Score=49.61 Aligned_cols=46 Identities=17% Similarity=0.290 Sum_probs=37.6
Q ss_pred ccccchhHHHHHHHHHHhc---------CCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 157 YAFKSRESTMKDIMEAMKD---------ENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 157 ~~~vG~~~~~~~i~~~L~~---------~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
..++|.+..++.+...+.. .....+-++|..|+|||++|+.+.+..
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999988888761 122368899999999999999998765
No 394
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=77.30 E-value=1.3 Score=40.11 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=19.1
Q ss_pred cEEEEEeCCCCchhHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQK 200 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~ 200 (848)
..|.++|.+|+|||||.+.+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999988763
No 395
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=77.24 E-value=1.4 Score=41.42 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=20.1
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
-.++++|..|+|||||.+.+...
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999988754
No 396
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=77.20 E-value=1.9 Score=48.76 Aligned_cols=46 Identities=17% Similarity=0.181 Sum_probs=37.2
Q ss_pred ccccccchhHHHHHHHHHHhcCCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 155 GVYAFKSRESTMKDIMEAMKDENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 155 ~~~~~vG~~~~~~~i~~~L~~~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
.-..++|.+..++.+...+... ..+.++|..|+||||+|+.+....
T Consensus 39 ~l~~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 39 LIDQVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HHHHCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTS
T ss_pred ccceEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccC
Confidence 3467899988887776666544 478999999999999999998754
No 397
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=77.20 E-value=1.3 Score=44.84 Aligned_cols=27 Identities=26% Similarity=0.315 Sum_probs=22.8
Q ss_pred CccEEEEEeCCCCchhHHHHHHHHHHh
Q 003090 177 NVSITGICGMGGVGKTTLVKEIQKQAK 203 (848)
Q Consensus 177 ~~~vi~i~G~gG~GKTtla~~v~~~~~ 203 (848)
...++.++|.+|+||||++..+.....
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~ 129 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFV 129 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHH
Confidence 346999999999999999988876554
No 398
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=77.09 E-value=1.5 Score=41.91 Aligned_cols=24 Identities=29% Similarity=0.250 Sum_probs=20.7
Q ss_pred cEEEEEeCCCCchhHHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
..|.+.|+.|+||||+|+.+.+..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 368899999999999999997654
No 399
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=77.00 E-value=1.3 Score=43.89 Aligned_cols=22 Identities=41% Similarity=0.496 Sum_probs=20.0
Q ss_pred cEEEEEeCCCCchhHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQK 200 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~ 200 (848)
.+++|+|..|.|||||.+.+..
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999998874
No 400
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=76.98 E-value=1.6 Score=41.72 Aligned_cols=23 Identities=22% Similarity=0.085 Sum_probs=19.9
Q ss_pred EEEEEeCCCCchhHHHHHHHHHH
Q 003090 180 ITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 180 vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
.|.+.|+.|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999987643
No 401
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=76.96 E-value=1.4 Score=43.55 Aligned_cols=27 Identities=19% Similarity=0.326 Sum_probs=23.1
Q ss_pred CCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 176 ENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 176 ~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
..-.+++|+|..|.||||+.+.+....
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 444689999999999999999988654
No 402
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=76.83 E-value=1.3 Score=44.46 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=20.6
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.+++|+|..|.|||||.+.+..-
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 68999999999999999988743
No 403
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=76.81 E-value=1.7 Score=43.88 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=21.5
Q ss_pred cEEEEEeCCCCchhHHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
..+-++|..|+|||++|+.+.+..
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 467789999999999999999876
No 404
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=76.79 E-value=1.3 Score=44.64 Aligned_cols=27 Identities=15% Similarity=0.174 Sum_probs=22.9
Q ss_pred CCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 176 ENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 176 ~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
..-.+++|+|..|.|||||++.+..-.
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 334689999999999999999988654
No 405
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=76.77 E-value=1.5 Score=42.15 Aligned_cols=23 Identities=26% Similarity=0.209 Sum_probs=20.0
Q ss_pred EEEEEeCCCCchhHHHHHHHHHH
Q 003090 180 ITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 180 vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
.|.+.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997653
No 406
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=76.73 E-value=2 Score=45.48 Aligned_cols=33 Identities=27% Similarity=0.523 Sum_probs=25.1
Q ss_pred HHHHHHh--cCCccEEEEEeCCCCchhHHHHHHHH
Q 003090 168 DIMEAMK--DENVSITGICGMGGVGKTTLVKEIQK 200 (848)
Q Consensus 168 ~i~~~L~--~~~~~vi~i~G~gG~GKTtla~~v~~ 200 (848)
.+.+.|. .....+++|+|..|+|||||.+.+..
T Consensus 57 ~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 57 AISDALKEIDSSVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp HHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHT
T ss_pred hhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhC
Confidence 3444443 23446999999999999999999885
No 407
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=76.45 E-value=1.5 Score=40.47 Aligned_cols=23 Identities=30% Similarity=0.432 Sum_probs=20.3
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.+..|+|..|.||||++.+|+--
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 48899999999999999998753
No 408
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=76.44 E-value=0.96 Score=43.82 Aligned_cols=25 Identities=32% Similarity=0.263 Sum_probs=21.3
Q ss_pred CccEEEEEeCCCCchhHHHHHHHHH
Q 003090 177 NVSITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 177 ~~~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.-.+|+|.|..|.||||+++.+...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 3468999999999999999888654
No 409
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=76.30 E-value=2.9 Score=40.29 Aligned_cols=26 Identities=27% Similarity=0.428 Sum_probs=22.8
Q ss_pred cEEEEEeCCCCchhHHHHHHHHHHhh
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQAKE 204 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~~~~ 204 (848)
..|.|.|..|+||||+++.+.+....
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 57999999999999999999877643
No 410
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=76.25 E-value=1.4 Score=44.93 Aligned_cols=27 Identities=26% Similarity=0.413 Sum_probs=22.6
Q ss_pred CccEEEEEeCCCCchhHHHHHHHHHHh
Q 003090 177 NVSITGICGMGGVGKTTLVKEIQKQAK 203 (848)
Q Consensus 177 ~~~vi~i~G~gG~GKTtla~~v~~~~~ 203 (848)
...++.++|.+|+||||++..+.....
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~ 130 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYA 130 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 447999999999999999988876543
No 411
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=76.20 E-value=1.4 Score=44.82 Aligned_cols=28 Identities=21% Similarity=0.415 Sum_probs=21.8
Q ss_pred cCCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 175 DENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 175 ~~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
....++|+|+|-||+||||+|-.+-...
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~~L 65 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSAAF 65 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCceEEEEECCCCccHHHHHHHHHHHH
Confidence 4466899999999999999987766544
No 412
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=75.95 E-value=2.7 Score=44.69 Aligned_cols=42 Identities=17% Similarity=0.150 Sum_probs=29.3
Q ss_pred chhHHHHHHHHHHhcCCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 161 SRESTMKDIMEAMKDENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 161 G~~~~~~~i~~~L~~~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
|.......+++.+....-.++.|+|..|.||||+.+.+....
T Consensus 150 g~~~~~~~~L~~l~~~~ggii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 150 GMTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp CCCHHHHHHHHHHHTSSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHhhc
Confidence 443333334443344555799999999999999999988754
No 413
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=75.93 E-value=1 Score=45.65 Aligned_cols=24 Identities=21% Similarity=0.416 Sum_probs=20.9
Q ss_pred CccEEEEEeCCCCchhHHHHHHHH
Q 003090 177 NVSITGICGMGGVGKTTLVKEIQK 200 (848)
Q Consensus 177 ~~~vi~i~G~gG~GKTtla~~v~~ 200 (848)
.-.+++|+|..|.|||||++.+..
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCchHHHHHHHHHc
Confidence 336899999999999999998864
No 414
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=75.79 E-value=1.6 Score=39.11 Aligned_cols=22 Identities=32% Similarity=0.569 Sum_probs=19.1
Q ss_pred EEEEEeCCCCchhHHHHHHHHH
Q 003090 180 ITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 180 vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.|.++|.+|+|||||...+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999888754
No 415
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=75.75 E-value=1.5 Score=45.50 Aligned_cols=24 Identities=33% Similarity=0.574 Sum_probs=21.1
Q ss_pred ccEEEEEeCCCCchhHHHHHHHHH
Q 003090 178 VSITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 178 ~~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
-.+++|+|..|.|||||.+.+.--
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEEcCCCchHHHHHHHHhcC
Confidence 368999999999999999998753
No 416
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=75.68 E-value=3 Score=38.66 Aligned_cols=25 Identities=24% Similarity=0.247 Sum_probs=21.0
Q ss_pred CccEEEEEeCCCCchhHHHHHHHHH
Q 003090 177 NVSITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 177 ~~~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
....|.++|..|+|||||...+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3457899999999999999888753
No 417
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=75.44 E-value=1.4 Score=40.79 Aligned_cols=21 Identities=43% Similarity=0.553 Sum_probs=18.5
Q ss_pred EEEEEeCCCCchhHHHHHHHH
Q 003090 180 ITGICGMGGVGKTTLVKEIQK 200 (848)
Q Consensus 180 vi~i~G~gG~GKTtla~~v~~ 200 (848)
.|.++|.+|+|||||.+.+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 578999999999999987764
No 418
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=75.32 E-value=1.5 Score=44.24 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=22.8
Q ss_pred CccEEEEEeCCCCchhHHHHHHHHHHh
Q 003090 177 NVSITGICGMGGVGKTTLVKEIQKQAK 203 (848)
Q Consensus 177 ~~~vi~i~G~gG~GKTtla~~v~~~~~ 203 (848)
...+++++|.+|+||||++..+.....
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~ 123 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYK 123 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 346899999999999999998886554
No 419
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=75.28 E-value=1.8 Score=38.63 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=19.6
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
..|.++|..|+||||+...+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45889999999999999888753
No 420
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=75.20 E-value=2 Score=40.93 Aligned_cols=27 Identities=19% Similarity=0.261 Sum_probs=23.1
Q ss_pred CCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 176 ENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 176 ~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
...+||-|.|..|+||+|.|+.+.+..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 355789999999999999999988654
No 421
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=74.95 E-value=1.6 Score=40.40 Aligned_cols=22 Identities=32% Similarity=0.569 Sum_probs=19.3
Q ss_pred EEEEEeCCCCchhHHHHHHHHH
Q 003090 180 ITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 180 vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.|.++|.+|+|||||+..+...
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5889999999999999888753
No 422
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=74.80 E-value=3.6 Score=42.98 Aligned_cols=26 Identities=23% Similarity=0.081 Sum_probs=22.5
Q ss_pred CCccEEEEEeCCCCchhHHHHHHHHH
Q 003090 176 ENVSITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 176 ~~~~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
..-.++.|+|..|.||||+++.+...
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 34468999999999999999999864
No 423
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=74.79 E-value=1.8 Score=41.89 Aligned_cols=24 Identities=25% Similarity=0.266 Sum_probs=21.1
Q ss_pred cEEEEEeCCCCchhHHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
..|.+.|+.|+||||+|+.+.+..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998654
No 424
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=74.56 E-value=2 Score=41.63 Aligned_cols=24 Identities=33% Similarity=0.351 Sum_probs=21.1
Q ss_pred ccEEEEEeCCCCchhHHHHHHHHH
Q 003090 178 VSITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 178 ~~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
..+|+|+|+.|.||||+++.+...
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999988764
No 425
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=74.56 E-value=4.9 Score=38.38 Aligned_cols=29 Identities=24% Similarity=0.280 Sum_probs=24.1
Q ss_pred CCccEEEEEeCCCCchhHHHHHHHHHHhh
Q 003090 176 ENVSITGICGMGGVGKTTLVKEIQKQAKE 204 (848)
Q Consensus 176 ~~~~vi~i~G~gG~GKTtla~~v~~~~~~ 204 (848)
..-..|.+.|+.|+||||+++.+.+....
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 34468999999999999999999876653
No 426
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=74.47 E-value=1.7 Score=41.89 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=21.2
Q ss_pred cEEEEEeCCCCchhHHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
.++.|+|..|+||||+++.+....
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 589999999999999999988554
No 427
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=74.34 E-value=1.8 Score=39.01 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=19.5
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
-.|.++|..|+|||||...+.+.
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 35789999999999999888753
No 428
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=74.28 E-value=1.8 Score=40.03 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=19.4
Q ss_pred cEEEEEeCCCCchhHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQK 200 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~ 200 (848)
..|.++|..|+|||||...+..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999988864
No 429
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=74.16 E-value=1.8 Score=44.83 Aligned_cols=23 Identities=39% Similarity=0.475 Sum_probs=20.7
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.+++|+|..|.|||||.+.+.--
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCchHHHHHHHHhcC
Confidence 58999999999999999998754
No 430
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=73.90 E-value=1.7 Score=43.16 Aligned_cols=24 Identities=29% Similarity=0.542 Sum_probs=19.8
Q ss_pred cEEEEEeCCCCchhHHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
++|+|.|-||+||||+|..+-...
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~l 25 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGL 25 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cEEEEecCCCCcHHHHHHHHHHHH
Confidence 478888999999999987776554
No 431
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=73.78 E-value=1.8 Score=40.27 Aligned_cols=21 Identities=38% Similarity=0.210 Sum_probs=18.3
Q ss_pred EEEEEeCCCCchhHHHHHHHH
Q 003090 180 ITGICGMGGVGKTTLVKEIQK 200 (848)
Q Consensus 180 vi~i~G~gG~GKTtla~~v~~ 200 (848)
.|.++|..|+|||||.+.+.+
T Consensus 16 ki~vvG~~~~GKssL~~~l~~ 36 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYS 36 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 578999999999999977764
No 432
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=73.66 E-value=2 Score=43.64 Aligned_cols=23 Identities=22% Similarity=0.252 Sum_probs=20.4
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.+|.|+|+.|+||||+|+.+...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998764
No 433
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=73.63 E-value=3.3 Score=38.18 Aligned_cols=33 Identities=21% Similarity=0.306 Sum_probs=25.0
Q ss_pred HHHHHHHhcCCccEEEEEeCCCCchhHHHHHHHH
Q 003090 167 KDIMEAMKDENVSITGICGMGGVGKTTLVKEIQK 200 (848)
Q Consensus 167 ~~i~~~L~~~~~~vi~i~G~gG~GKTtla~~v~~ 200 (848)
..+.+ +.....-.|.++|..|+|||||...+..
T Consensus 6 ~~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 6 TRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp HHHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred HHHHH-hcCCCccEEEEECCCCCCHHHHHHHHhc
Confidence 44555 3445556789999999999999988764
No 434
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=73.51 E-value=3.8 Score=47.35 Aligned_cols=48 Identities=17% Similarity=0.251 Sum_probs=36.6
Q ss_pred ccccccchhHHHHHHHHHHh----c---------CCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 155 GVYAFKSRESTMKDIMEAMK----D---------ENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 155 ~~~~~vG~~~~~~~i~~~L~----~---------~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
...+|.|.++.++++.+++. . ...+-|=++|..|.|||++|++|.+..
T Consensus 202 ~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el 262 (806)
T 3cf2_A 202 GYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp CGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT
T ss_pred ChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 34568899888887777653 1 223457789999999999999998754
No 435
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=73.30 E-value=6.6 Score=37.22 Aligned_cols=27 Identities=26% Similarity=0.367 Sum_probs=23.0
Q ss_pred cEEEEEeCCCCchhHHHHHHHHHHhhc
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQAKEM 205 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~~~~~ 205 (848)
..|.+.|..|+||||.++.+.+.....
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~ 30 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQL 30 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 478899999999999999999876533
No 436
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=73.24 E-value=1.8 Score=43.27 Aligned_cols=24 Identities=25% Similarity=0.509 Sum_probs=21.2
Q ss_pred cEEEEEeCCCCchhHHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
.++.|+|..|+|||||+..+....
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 689999999999999999887644
No 437
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=73.16 E-value=3.6 Score=47.97 Aligned_cols=46 Identities=24% Similarity=0.321 Sum_probs=37.1
Q ss_pred ccccchhHHHHHHHHHHhc---------CCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 157 YAFKSRESTMKDIMEAMKD---------ENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 157 ~~~vG~~~~~~~i~~~L~~---------~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
..++|.++.++.+...+.. .....+-++|..|+|||++|+.+.+..
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 4588999999888887751 223468899999999999999998765
No 438
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=72.98 E-value=1.9 Score=44.58 Aligned_cols=23 Identities=35% Similarity=0.598 Sum_probs=20.7
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.+++|+|..|.|||||.+.+.--
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 68999999999999999998743
No 439
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=72.92 E-value=1.6 Score=46.69 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=21.2
Q ss_pred ccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 178 VSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 178 ~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
..+|.++|.+|+||||++..+....
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3689999999999999988877554
No 440
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=72.88 E-value=2.2 Score=41.51 Aligned_cols=24 Identities=38% Similarity=0.344 Sum_probs=21.1
Q ss_pred cEEEEEeCCCCchhHHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
..|.|.|..|+||||+++.+.+..
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHc
Confidence 468999999999999999998654
No 441
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=72.71 E-value=2.6 Score=38.79 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=20.5
Q ss_pred CCccEEEEEeCCCCchhHHHHHHHH
Q 003090 176 ENVSITGICGMGGVGKTTLVKEIQK 200 (848)
Q Consensus 176 ~~~~vi~i~G~gG~GKTtla~~v~~ 200 (848)
.....|.++|..|+|||||...+..
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~ 38 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLAS 38 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHhc
Confidence 3445789999999999999887753
No 442
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=72.70 E-value=2.1 Score=38.52 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=19.1
Q ss_pred EEEEEeCCCCchhHHHHHHHHH
Q 003090 180 ITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 180 vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.|.++|..|+|||||.+.+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999888753
No 443
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=72.64 E-value=2 Score=43.48 Aligned_cols=22 Identities=32% Similarity=0.385 Sum_probs=19.9
Q ss_pred cEEEEEeCCCCchhHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQK 200 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~ 200 (848)
.+|-++|+.|.||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999999876
No 444
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=72.56 E-value=2.1 Score=40.35 Aligned_cols=31 Identities=23% Similarity=0.243 Sum_probs=20.2
Q ss_pred HHHhcCCccEEEEEeCCCCchhHHHHHHHHH
Q 003090 171 EAMKDENVSITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 171 ~~L~~~~~~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
++....+.-.|.++|..|+|||||...+.+.
T Consensus 23 ~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 23 NLYFQGQAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp -------CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred hHhhcCCeEEEEEECcCCCCHHHHHHHHHhC
Confidence 3333344457899999999999999877653
No 445
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=72.45 E-value=2.1 Score=39.10 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=19.2
Q ss_pred cEEEEEeCCCCchhHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQK 200 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~ 200 (848)
..|.++|..|+|||||.+.+..
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~ 26 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAG 26 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 3688999999999999988764
No 446
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=72.38 E-value=2.1 Score=38.41 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=19.6
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
-.|.++|..|+|||||...+...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 35889999999999999887754
No 447
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=72.22 E-value=2.2 Score=39.11 Aligned_cols=32 Identities=25% Similarity=0.402 Sum_probs=22.8
Q ss_pred HHHHHHhc-CCccEEEEEeCCCCchhHHHHHHH
Q 003090 168 DIMEAMKD-ENVSITGICGMGGVGKTTLVKEIQ 199 (848)
Q Consensus 168 ~i~~~L~~-~~~~vi~i~G~gG~GKTtla~~v~ 199 (848)
++++.+.. ...-.|.++|..|+|||||...+.
T Consensus 7 ~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 7 SMFDKLWGSNKELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp HHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTC
T ss_pred HHHHHhcCCCCccEEEEECCCCCCHHHHHHHHh
Confidence 34443434 455678999999999999986654
No 448
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=72.07 E-value=3 Score=39.06 Aligned_cols=31 Identities=19% Similarity=0.355 Sum_probs=22.7
Q ss_pred HHHHHh-cCCccEEEEEeCCCCchhHHHHHHH
Q 003090 169 IMEAMK-DENVSITGICGMGGVGKTTLVKEIQ 199 (848)
Q Consensus 169 i~~~L~-~~~~~vi~i~G~gG~GKTtla~~v~ 199 (848)
+++.+. ......|.++|.+|+|||||.+.+.
T Consensus 15 ~l~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~ 46 (198)
T 1f6b_A 15 VLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLK 46 (198)
T ss_dssp HHHHHTCTTCCEEEEEEEETTSSHHHHHHHHS
T ss_pred HHHHhhccCCCcEEEEECCCCCCHHHHHHHHh
Confidence 445543 3334468899999999999988765
No 449
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=72.01 E-value=2.8 Score=45.60 Aligned_cols=27 Identities=22% Similarity=0.336 Sum_probs=21.3
Q ss_pred CccEEEEEeCCCCchhHHHHHHHHHHh
Q 003090 177 NVSITGICGMGGVGKTTLVKEIQKQAK 203 (848)
Q Consensus 177 ~~~vi~i~G~gG~GKTtla~~v~~~~~ 203 (848)
...+|.++|.+|+||||++..+.....
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~ 126 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQ 126 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 356899999999999999888775543
No 450
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=71.91 E-value=2.1 Score=44.40 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=21.0
Q ss_pred ccEEEEEeCCCCchhHHHHHHHHH
Q 003090 178 VSITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 178 ~~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
-.+++|+|..|.|||||.+.+.--
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEEcCCCchHHHHHHHHHCC
Confidence 368999999999999999998753
No 451
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=71.91 E-value=2.3 Score=38.07 Aligned_cols=22 Identities=23% Similarity=0.379 Sum_probs=18.9
Q ss_pred EEEEEeCCCCchhHHHHHHHHH
Q 003090 180 ITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 180 vi~i~G~gG~GKTtla~~v~~~ 201 (848)
-|.++|..|+|||||...+...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999888653
No 452
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=71.87 E-value=2.2 Score=39.26 Aligned_cols=23 Identities=26% Similarity=0.328 Sum_probs=19.5
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
-.|.++|..|+|||||...+.+.
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35789999999999999887753
No 453
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=71.67 E-value=2.2 Score=43.12 Aligned_cols=27 Identities=22% Similarity=0.265 Sum_probs=22.8
Q ss_pred ccEEEEEeCCCCchhHHHHHHHHHHhh
Q 003090 178 VSITGICGMGGVGKTTLVKEIQKQAKE 204 (848)
Q Consensus 178 ~~vi~i~G~gG~GKTtla~~v~~~~~~ 204 (848)
-.++.|+|..|+||||+++.+......
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~~ 61 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWGT 61 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 358999999999999999988866543
No 454
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=71.66 E-value=7 Score=37.71 Aligned_cols=26 Identities=23% Similarity=0.432 Sum_probs=22.9
Q ss_pred cEEEEEeCCCCchhHHHHHHHHHHhh
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQAKE 204 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~~~~ 204 (848)
..|.+.|..|+||||+++.+.+....
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~~l~~ 53 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVETLQQ 53 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 58999999999999999999877653
No 455
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=71.66 E-value=2.1 Score=44.42 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=21.0
Q ss_pred ccEEEEEeCCCCchhHHHHHHHHH
Q 003090 178 VSITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 178 ~~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
-.+++|+|..|.|||||.+.+.--
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCchHHHHHHHHhcC
Confidence 368999999999999999998753
No 456
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=71.63 E-value=4.4 Score=41.92 Aligned_cols=43 Identities=23% Similarity=0.137 Sum_probs=29.1
Q ss_pred ccEEEEEeCCCCchhHHHHHHHHHHhhcccc----CcEEEEEeccCC
Q 003090 178 VSITGICGMGGVGKTTLVKEIQKQAKEMKMF----DDVAMAVVSQTP 220 (848)
Q Consensus 178 ~~vi~i~G~gG~GKTtla~~v~~~~~~~~~F----~~~~wv~vs~~~ 220 (848)
-.++.|+|..|.|||||+..+.......... ..++|+.-...+
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~ 177 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF 177 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC
Confidence 3689999999999999999888654211111 234777655444
No 457
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=71.57 E-value=2.2 Score=38.45 Aligned_cols=22 Identities=36% Similarity=0.407 Sum_probs=19.1
Q ss_pred EEEEEeCCCCchhHHHHHHHHH
Q 003090 180 ITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 180 vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.|.++|..|+|||||...+...
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5889999999999999887753
No 458
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=71.54 E-value=2.1 Score=43.11 Aligned_cols=24 Identities=29% Similarity=0.519 Sum_probs=19.9
Q ss_pred cEEEEEeCCCCchhHHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
++|+|.|-||+||||+|..+-...
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~L 26 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAAL 26 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEeCCCcCcHHHHHHHHHHHH
Confidence 578888999999999987776544
No 459
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=71.42 E-value=2.3 Score=43.92 Aligned_cols=24 Identities=42% Similarity=0.483 Sum_probs=22.2
Q ss_pred cEEEEEeCCCCchhHHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
.+++|+|..|+|||||.+.+.+..
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 689999999999999999999875
No 460
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=71.39 E-value=2.1 Score=38.45 Aligned_cols=20 Identities=30% Similarity=0.419 Sum_probs=17.5
Q ss_pred EEEEEeCCCCchhHHHHHHH
Q 003090 180 ITGICGMGGVGKTTLVKEIQ 199 (848)
Q Consensus 180 vi~i~G~gG~GKTtla~~v~ 199 (848)
.|.++|..|+|||||.+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 57899999999999987764
No 461
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=71.36 E-value=4.9 Score=41.83 Aligned_cols=25 Identities=32% Similarity=0.557 Sum_probs=20.6
Q ss_pred CCccEEEEEeCCCCchhHHHHHHHH
Q 003090 176 ENVSITGICGMGGVGKTTLVKEIQK 200 (848)
Q Consensus 176 ~~~~vi~i~G~gG~GKTtla~~v~~ 200 (848)
.+..+|+|+|..|+|||||...+..
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~ 201 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTG 201 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHC
Confidence 3567899999999999999988764
No 462
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=71.07 E-value=2.2 Score=44.50 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=20.7
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.+++|+|..|.|||||.+.+.--
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCcHHHHHHHHHHcC
Confidence 58999999999999999998754
No 463
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=70.94 E-value=2.4 Score=38.68 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=20.0
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
..|.++|..|+|||||...+.+.
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999888764
No 464
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=70.80 E-value=2.8 Score=39.81 Aligned_cols=26 Identities=23% Similarity=0.240 Sum_probs=21.6
Q ss_pred CCccEEEEEeCCCCchhHHHHHHHHH
Q 003090 176 ENVSITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 176 ~~~~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.....|.++|..|+|||||...+...
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34567899999999999999888754
No 465
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=70.76 E-value=2.3 Score=44.39 Aligned_cols=23 Identities=30% Similarity=0.458 Sum_probs=20.6
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.+++|+|..|.|||||.+.+.--
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEEcCCCchHHHHHHHHHcC
Confidence 58999999999999999998753
No 466
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=70.69 E-value=2.3 Score=44.36 Aligned_cols=24 Identities=29% Similarity=0.320 Sum_probs=21.0
Q ss_pred ccEEEEEeCCCCchhHHHHHHHHH
Q 003090 178 VSITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 178 ~~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
-.+++|+|..|.|||||.+.+.--
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCChHHHHHHHHHcC
Confidence 368999999999999999998753
No 467
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=70.68 E-value=2.4 Score=38.12 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=18.9
Q ss_pred EEEEEeCCCCchhHHHHHHHHH
Q 003090 180 ITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 180 vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.|.++|..|+|||||...+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999887754
No 468
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=70.60 E-value=2 Score=43.57 Aligned_cols=21 Identities=29% Similarity=0.495 Sum_probs=18.6
Q ss_pred EEEEEeCCCCchhHHHHHHHH
Q 003090 180 ITGICGMGGVGKTTLVKEIQK 200 (848)
Q Consensus 180 vi~i~G~gG~GKTtla~~v~~ 200 (848)
.|+++|..|+|||||.+.++.
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 359999999999999999874
No 469
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=70.41 E-value=3.6 Score=42.69 Aligned_cols=29 Identities=21% Similarity=0.260 Sum_probs=23.8
Q ss_pred hcCCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 174 KDENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 174 ~~~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
....-.++.|+|..|.||||+.+.+....
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 44444699999999999999999887654
No 470
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=70.39 E-value=2.5 Score=38.11 Aligned_cols=22 Identities=23% Similarity=0.386 Sum_probs=19.2
Q ss_pred EEEEEeCCCCchhHHHHHHHHH
Q 003090 180 ITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 180 vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.|.++|..|+|||||.+.+.+.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5789999999999999888754
No 471
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=70.38 E-value=2.4 Score=39.10 Aligned_cols=22 Identities=32% Similarity=0.363 Sum_probs=18.8
Q ss_pred cEEEEEeCCCCchhHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQK 200 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~ 200 (848)
-.|.++|..|+|||||...+.+
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 3688999999999999977664
No 472
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=70.31 E-value=2.5 Score=37.87 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=18.9
Q ss_pred EEEEEeCCCCchhHHHHHHHHH
Q 003090 180 ITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 180 vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.|.++|..|+|||||...+...
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5889999999999998877653
No 473
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=70.13 E-value=2.4 Score=38.29 Aligned_cols=21 Identities=43% Similarity=0.700 Sum_probs=18.6
Q ss_pred EEEEEeCCCCchhHHHHHHHH
Q 003090 180 ITGICGMGGVGKTTLVKEIQK 200 (848)
Q Consensus 180 vi~i~G~gG~GKTtla~~v~~ 200 (848)
.|.++|..|+|||||...+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 578999999999999988764
No 474
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=70.04 E-value=2.9 Score=38.85 Aligned_cols=25 Identities=16% Similarity=0.428 Sum_probs=21.2
Q ss_pred CCccEEEEEeCCCCchhHHHHHHHH
Q 003090 176 ENVSITGICGMGGVGKTTLVKEIQK 200 (848)
Q Consensus 176 ~~~~vi~i~G~gG~GKTtla~~v~~ 200 (848)
.+...|.++|..|+|||||...+..
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3456799999999999999988864
No 475
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=69.94 E-value=2.6 Score=39.12 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=19.5
Q ss_pred ccEEEEEeCCCCchhHHHHHHHH
Q 003090 178 VSITGICGMGGVGKTTLVKEIQK 200 (848)
Q Consensus 178 ~~vi~i~G~gG~GKTtla~~v~~ 200 (848)
...|.++|..|+|||||...+.+
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34789999999999999988775
No 476
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=69.90 E-value=4.7 Score=41.62 Aligned_cols=28 Identities=25% Similarity=0.345 Sum_probs=23.6
Q ss_pred cCCccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 175 DENVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 175 ~~~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
..+..+++++|.+|+||||++..+....
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4566799999999999999998887544
No 477
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=69.83 E-value=2.8 Score=37.97 Aligned_cols=22 Identities=32% Similarity=0.314 Sum_probs=19.0
Q ss_pred cEEEEEeCCCCchhHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQK 200 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~ 200 (848)
-.|.++|..|+|||||.+.+..
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCccHHHHHHHHhc
Confidence 4689999999999999987763
No 478
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=69.73 E-value=2.6 Score=37.89 Aligned_cols=22 Identities=32% Similarity=0.360 Sum_probs=19.1
Q ss_pred EEEEEeCCCCchhHHHHHHHHH
Q 003090 180 ITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 180 vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.|.++|..|+|||||...+...
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999888753
No 479
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=69.70 E-value=2.6 Score=38.52 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=20.1
Q ss_pred ccEEEEEeCCCCchhHHHHHHHHH
Q 003090 178 VSITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 178 ~~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.-.|.++|..|+|||||...+...
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 346889999999999999887753
No 480
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=69.70 E-value=2.6 Score=39.03 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=19.5
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
-.|.++|..|+|||||...+.+.
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCcHHHHHHHHHhC
Confidence 36889999999999999877654
No 481
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=69.30 E-value=2.9 Score=38.78 Aligned_cols=24 Identities=25% Similarity=0.234 Sum_probs=20.3
Q ss_pred cEEEEEeCCCCchhHHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
-.|.++|..|+|||||...+.+..
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 358899999999999998887643
No 482
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=69.29 E-value=2.6 Score=43.66 Aligned_cols=26 Identities=27% Similarity=0.374 Sum_probs=22.6
Q ss_pred CccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 177 NVSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 177 ~~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
+..+|+|+|..|+|||||...+....
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999887654
No 483
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=69.29 E-value=2.7 Score=38.26 Aligned_cols=23 Identities=30% Similarity=0.354 Sum_probs=19.9
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
-.|.++|..|+|||||...+...
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46889999999999999888754
No 484
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=69.28 E-value=2.7 Score=38.25 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=19.4
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
-.|.++|..|+|||||...+...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35889999999999999888643
No 485
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=69.22 E-value=2.7 Score=38.55 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=19.8
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
-.|.++|..|+|||||...+.+.
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45789999999999999888754
No 486
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=69.22 E-value=2.7 Score=37.86 Aligned_cols=20 Identities=35% Similarity=0.483 Sum_probs=17.8
Q ss_pred EEEEEeCCCCchhHHHHHHH
Q 003090 180 ITGICGMGGVGKTTLVKEIQ 199 (848)
Q Consensus 180 vi~i~G~gG~GKTtla~~v~ 199 (848)
.|.++|..|+|||||...+.
T Consensus 4 ki~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999999998775
No 487
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=69.16 E-value=2.8 Score=37.70 Aligned_cols=21 Identities=29% Similarity=0.392 Sum_probs=18.7
Q ss_pred EEEEEeCCCCchhHHHHHHHH
Q 003090 180 ITGICGMGGVGKTTLVKEIQK 200 (848)
Q Consensus 180 vi~i~G~gG~GKTtla~~v~~ 200 (848)
.|.++|..|+|||||...+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 578999999999999988774
No 488
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=69.14 E-value=2.2 Score=39.85 Aligned_cols=23 Identities=17% Similarity=0.235 Sum_probs=18.8
Q ss_pred ccEEEEEeCCCCchhHHHHHHHH
Q 003090 178 VSITGICGMGGVGKTTLVKEIQK 200 (848)
Q Consensus 178 ~~vi~i~G~gG~GKTtla~~v~~ 200 (848)
.-.|.++|.+|+|||||.+.+.+
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~ 42 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFH 42 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 34688999999999999876543
No 489
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=69.12 E-value=2.2 Score=44.60 Aligned_cols=25 Identities=24% Similarity=0.314 Sum_probs=21.7
Q ss_pred ccEEEEEeCCCCchhHHHHHHHHHH
Q 003090 178 VSITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 178 ~~vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
...++|+|..|.|||||++.+....
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3679999999999999999988654
No 490
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=69.09 E-value=2.8 Score=42.15 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=20.3
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.+|.|+|..|+||||||..+...
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred cEEEEECCCcCCHHHHHHHHHHh
Confidence 57899999999999999988753
No 491
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=69.04 E-value=1.9 Score=44.44 Aligned_cols=23 Identities=30% Similarity=0.286 Sum_probs=20.7
Q ss_pred cEEEEEeCCCCchhHHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.+++|+|..|.|||||.+.+.--
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTS
T ss_pred CEEEEECCCCccHHHHHHHHHcC
Confidence 68999999999999999998753
No 492
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=68.97 E-value=3 Score=37.94 Aligned_cols=24 Identities=33% Similarity=0.436 Sum_probs=20.3
Q ss_pred CccEEEEEeCCCCchhHHHHHHHH
Q 003090 177 NVSITGICGMGGVGKTTLVKEIQK 200 (848)
Q Consensus 177 ~~~vi~i~G~gG~GKTtla~~v~~ 200 (848)
....|.++|..|+|||||...+..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 445789999999999999988764
No 493
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=68.92 E-value=1.6 Score=41.27 Aligned_cols=24 Identities=13% Similarity=0.281 Sum_probs=19.7
Q ss_pred CCccEEEEEeCCCCchhHHHHHHH
Q 003090 176 ENVSITGICGMGGVGKTTLVKEIQ 199 (848)
Q Consensus 176 ~~~~vi~i~G~gG~GKTtla~~v~ 199 (848)
..-..++++|..|+|||||.+.+.
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~ 47 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLT 47 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHh
Confidence 344579999999999999986654
No 494
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=68.64 E-value=3.2 Score=39.19 Aligned_cols=23 Identities=35% Similarity=0.416 Sum_probs=19.9
Q ss_pred EEEEEeCCCCchhHHHHHHHHHH
Q 003090 180 ITGICGMGGVGKTTLVKEIQKQA 202 (848)
Q Consensus 180 vi~i~G~gG~GKTtla~~v~~~~ 202 (848)
+|-+.|..|+||+|.|+.+.+..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57789999999999999988654
No 495
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=68.63 E-value=2.8 Score=38.62 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=19.3
Q ss_pred EEEEEeCCCCchhHHHHHHHHH
Q 003090 180 ITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 180 vi~i~G~gG~GKTtla~~v~~~ 201 (848)
.|.++|..|+|||||...+.+.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5789999999999999888754
No 496
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=68.55 E-value=2.9 Score=37.74 Aligned_cols=22 Identities=36% Similarity=0.477 Sum_probs=19.2
Q ss_pred cEEEEEeCCCCchhHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQK 200 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~ 200 (848)
-.|.++|..|+|||||...+..
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4688999999999999988864
No 497
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=68.55 E-value=2.5 Score=39.37 Aligned_cols=25 Identities=20% Similarity=0.364 Sum_probs=20.4
Q ss_pred cCCccEEEEEeCCCCchhHHHHHHH
Q 003090 175 DENVSITGICGMGGVGKTTLVKEIQ 199 (848)
Q Consensus 175 ~~~~~vi~i~G~gG~GKTtla~~v~ 199 (848)
....-.|.++|..|+|||||...+.
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~ 50 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLK 50 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHC
T ss_pred cCCccEEEEECCCCCCHHHHHHHHH
Confidence 3444579999999999999988764
No 498
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=68.54 E-value=2.1 Score=39.99 Aligned_cols=21 Identities=33% Similarity=0.480 Sum_probs=18.1
Q ss_pred ccEEEEEeCCCCchhHHHHHH
Q 003090 178 VSITGICGMGGVGKTTLVKEI 198 (848)
Q Consensus 178 ~~vi~i~G~gG~GKTtla~~v 198 (848)
.-.|.++|.+|+|||||.+.+
T Consensus 23 ~~ki~vvG~~~vGKSsLi~~l 43 (195)
T 3cbq_A 23 IFKVMLVGESGVGKSTLAGTF 43 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHT
T ss_pred EEEEEEECCCCCCHHHHHHHH
Confidence 356899999999999998765
No 499
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=68.38 E-value=2.9 Score=39.16 Aligned_cols=25 Identities=28% Similarity=0.306 Sum_probs=20.9
Q ss_pred CccEEEEEeCCCCchhHHHHHHHHH
Q 003090 177 NVSITGICGMGGVGKTTLVKEIQKQ 201 (848)
Q Consensus 177 ~~~vi~i~G~gG~GKTtla~~v~~~ 201 (848)
..-.|.++|..|+|||||...+.+.
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhC
Confidence 3456899999999999999888753
No 500
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=68.38 E-value=2.5 Score=38.52 Aligned_cols=22 Identities=32% Similarity=0.373 Sum_probs=18.7
Q ss_pred cEEEEEeCCCCchhHHHHHHHH
Q 003090 179 SITGICGMGGVGKTTLVKEIQK 200 (848)
Q Consensus 179 ~vi~i~G~gG~GKTtla~~v~~ 200 (848)
-.|.++|..|+|||||...+..
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4688999999999999887753
Done!