Query 003091
Match_columns 848
No_of_seqs 634 out of 3481
Neff 6.6
Searched_HMMs 46136
Date Thu Mar 28 16:50:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003091.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003091hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0151 Predicted splicing reg 100.0 1E-123 2E-128 1038.7 36.7 674 1-746 118-794 (877)
2 smart00582 RPR domain present 99.9 1.1E-22 2.5E-27 193.1 9.1 121 325-457 1-121 (121)
3 KOG4368 Predicted RNA binding 99.8 2.4E-17 5.1E-22 183.2 23.0 133 320-463 100-238 (757)
4 KOG2669 Regulator of nuclear m 99.7 3.8E-18 8.3E-23 183.0 10.8 128 320-460 3-130 (325)
5 PLN03134 glycine-rich RNA-bind 99.6 6.5E-15 1.4E-19 144.3 14.5 85 58-145 32-116 (144)
6 cd03562 CID CID (CTD-Interacti 99.6 5.9E-15 1.3E-19 138.9 9.5 107 326-448 4-113 (114)
7 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.5 2.2E-13 4.9E-18 152.0 14.2 83 58-143 267-349 (352)
8 PF01805 Surp: Surp module; I 99.5 5.8E-15 1.3E-19 120.8 1.1 54 207-260 1-54 (55)
9 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.4 7.6E-13 1.7E-17 147.7 10.9 81 60-143 3-83 (352)
10 smart00648 SWAP Suppressor-of- 99.4 6E-14 1.3E-18 114.4 1.5 52 209-261 2-53 (54)
11 TIGR01659 sex-lethal sex-letha 99.4 2.4E-12 5.3E-17 143.3 13.7 85 55-142 102-186 (346)
12 PF00076 RRM_1: RNA recognitio 99.4 1.5E-12 3.3E-17 110.0 8.9 70 63-136 1-70 (70)
13 KOG0122 Translation initiation 99.4 2.5E-12 5.5E-17 131.5 11.3 84 57-143 186-269 (270)
14 TIGR01659 sex-lethal sex-letha 99.4 5.6E-12 1.2E-16 140.4 14.4 85 59-146 192-278 (346)
15 KOG0121 Nuclear cap-binding pr 99.3 2.6E-12 5.7E-17 119.4 7.1 80 58-140 34-113 (153)
16 KOG0148 Apoptosis-promoting RN 99.3 9.7E-12 2.1E-16 128.6 11.5 82 55-145 159-240 (321)
17 KOG0149 Predicted RNA-binding 99.3 6.9E-12 1.5E-16 128.0 9.9 85 56-144 8-92 (247)
18 KOG0107 Alternative splicing f 99.3 6.4E-12 1.4E-16 122.9 7.9 80 58-145 8-87 (195)
19 TIGR01645 half-pint poly-U bin 99.3 2.5E-11 5.4E-16 142.5 13.2 82 59-143 203-284 (612)
20 KOG0146 RNA-binding protein ET 99.3 4.1E-12 8.9E-17 130.8 5.9 111 31-144 256-366 (371)
21 PLN03120 nucleic acid binding 99.3 2.4E-11 5.1E-16 128.0 11.4 80 60-146 4-83 (260)
22 KOG0111 Cyclophilin-type pepti 99.3 4.6E-12 1E-16 127.2 5.5 85 59-146 9-93 (298)
23 PF04818 CTD_bind: RNA polymer 99.3 1.2E-12 2.5E-17 110.7 0.8 64 375-448 1-64 (64)
24 KOG0125 Ataxin 2-binding prote 99.2 3.4E-11 7.4E-16 127.6 11.7 84 61-149 97-180 (376)
25 KOG4207 Predicted splicing fac 99.2 1.4E-11 3.1E-16 122.9 6.8 83 60-145 13-95 (256)
26 TIGR01645 half-pint poly-U bin 99.2 2.6E-11 5.7E-16 142.3 9.9 79 59-140 106-184 (612)
27 KOG0132 RNA polymerase II C-te 99.2 3.3E-10 7.1E-15 131.1 18.0 132 322-464 3-140 (894)
28 TIGR01628 PABP-1234 polyadenyl 99.2 1.1E-10 2.5E-15 138.7 14.5 82 58-143 283-364 (562)
29 PLN03213 repressor of silencin 99.2 4.4E-11 9.5E-16 131.7 9.8 79 58-143 8-88 (759)
30 KOG0126 Predicted RNA-binding 99.2 4.4E-12 9.6E-17 124.4 1.3 87 57-146 32-118 (219)
31 TIGR01622 SF-CC1 splicing fact 99.2 6.8E-11 1.5E-15 136.9 10.9 83 58-143 184-266 (457)
32 PF14259 RRM_6: RNA recognitio 99.2 1E-10 2.3E-15 99.6 9.2 70 63-136 1-70 (70)
33 TIGR01642 U2AF_lg U2 snRNP aux 99.2 2.3E-10 5E-15 134.2 14.7 84 59-145 294-377 (509)
34 TIGR01628 PABP-1234 polyadenyl 99.1 9.8E-11 2.1E-15 139.3 10.5 79 61-142 1-79 (562)
35 KOG0145 RNA-binding protein EL 99.1 9.6E-11 2.1E-15 120.4 8.8 86 56-144 37-122 (360)
36 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.1 3.3E-10 7.2E-15 132.2 14.5 82 56-145 271-353 (481)
37 KOG0148 Apoptosis-promoting RN 99.1 6.3E-11 1.4E-15 122.7 7.4 81 61-144 63-143 (321)
38 KOG0113 U1 small nuclear ribon 99.1 1.6E-10 3.4E-15 121.4 9.9 83 59-144 100-182 (335)
39 TIGR01648 hnRNP-R-Q heterogene 99.1 1.3E-10 2.8E-15 136.3 10.4 79 58-140 56-135 (578)
40 KOG0145 RNA-binding protein EL 99.1 4.2E-10 9.1E-15 115.8 11.4 84 57-143 275-358 (360)
41 KOG0114 Predicted RNA-binding 99.1 5.1E-10 1.1E-14 100.8 9.0 76 59-140 17-92 (124)
42 smart00362 RRM_2 RNA recogniti 99.1 6.9E-10 1.5E-14 92.6 9.3 71 62-137 1-71 (72)
43 KOG0105 Alternative splicing f 99.1 8.8E-10 1.9E-14 108.6 11.2 80 59-144 5-84 (241)
44 KOG0117 Heterogeneous nuclear 99.1 4.8E-10 1E-14 123.1 10.2 83 56-141 79-162 (506)
45 PLN03121 nucleic acid binding 99.1 8.1E-10 1.8E-14 114.8 11.4 77 58-141 3-79 (243)
46 KOG0130 RNA-binding protein RB 99.0 5.7E-10 1.2E-14 104.8 8.6 85 57-144 69-153 (170)
47 COG0724 RNA-binding proteins ( 99.0 6E-10 1.3E-14 116.8 10.0 80 60-142 115-194 (306)
48 KOG0124 Polypyrimidine tract-b 99.0 2E-10 4.4E-15 122.6 5.5 75 61-138 114-188 (544)
49 TIGR01622 SF-CC1 splicing fact 99.0 8.3E-10 1.8E-14 127.9 10.9 81 58-142 87-167 (457)
50 KOG0131 Splicing factor 3b, su 99.0 3.1E-10 6.8E-15 111.8 5.8 79 60-141 9-87 (203)
51 TIGR01648 hnRNP-R-Q heterogene 99.0 1E-09 2.2E-14 128.9 10.7 76 59-145 232-309 (578)
52 smart00360 RRM RNA recognition 99.0 1.6E-09 3.4E-14 90.0 8.1 70 65-137 1-70 (71)
53 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.0 1.8E-09 4E-14 126.0 10.7 76 60-144 2-79 (481)
54 KOG0108 mRNA cleavage and poly 99.0 1.3E-09 2.7E-14 123.7 8.8 82 61-145 19-100 (435)
55 PF12243 CTK3: CTD kinase subu 99.0 2.2E-09 4.8E-14 103.9 8.9 131 321-460 5-136 (139)
56 cd00590 RRM RRM (RNA recogniti 98.9 4.7E-09 1E-13 88.0 9.6 74 62-139 1-74 (74)
57 KOG0131 Splicing factor 3b, su 98.9 1E-09 2.2E-14 108.2 5.6 84 59-145 95-179 (203)
58 KOG0415 Predicted peptidyl pro 98.9 2.4E-09 5.2E-14 114.3 8.7 85 58-145 237-321 (479)
59 PF13893 RRM_5: RNA recognitio 98.9 6.8E-09 1.5E-13 84.9 8.5 56 77-140 1-56 (56)
60 KOG0109 RNA-binding protein LA 98.9 2.6E-09 5.7E-14 111.8 6.9 77 61-148 3-79 (346)
61 KOG0144 RNA-binding protein CU 98.9 4.7E-09 1E-13 114.9 9.1 86 55-143 29-117 (510)
62 KOG0153 Predicted RNA-binding 98.9 6E-09 1.3E-13 111.7 9.1 81 53-142 221-302 (377)
63 KOG0117 Heterogeneous nuclear 98.9 4.1E-09 8.9E-14 115.9 7.5 74 61-145 260-333 (506)
64 KOG0127 Nucleolar protein fibr 98.8 1E-08 2.3E-13 114.9 9.3 82 57-141 289-376 (678)
65 TIGR01642 U2AF_lg U2 snRNP aux 98.8 3.6E-08 7.9E-13 115.8 13.1 77 56-142 171-259 (509)
66 KOG0147 Transcriptional coacti 98.8 7E-09 1.5E-13 117.0 6.3 78 63-143 281-358 (549)
67 KOG0132 RNA polymerase II C-te 98.8 1.3E-08 2.8E-13 118.2 8.0 79 59-146 420-498 (894)
68 KOG0127 Nucleolar protein fibr 98.8 1.9E-08 4.2E-13 112.8 8.7 83 59-145 116-198 (678)
69 smart00361 RRM_1 RNA recogniti 98.7 3.1E-08 6.7E-13 85.1 7.9 61 74-137 2-69 (70)
70 KOG4206 Spliceosomal protein s 98.7 3.2E-08 6.9E-13 101.3 8.0 77 62-144 11-91 (221)
71 KOG0144 RNA-binding protein CU 98.6 5E-08 1.1E-12 107.0 6.8 86 55-143 419-504 (510)
72 KOG0109 RNA-binding protein LA 98.6 4.9E-08 1.1E-12 102.5 6.1 77 57-144 75-151 (346)
73 KOG4661 Hsp27-ERE-TATA-binding 98.5 4.1E-07 9E-12 102.2 9.8 83 59-144 404-486 (940)
74 KOG0123 Polyadenylate-binding 98.5 3.1E-07 6.6E-12 103.4 8.1 76 63-144 79-154 (369)
75 KOG0110 RNA-binding protein (R 98.4 1.7E-07 3.7E-12 108.6 5.4 85 57-144 610-694 (725)
76 KOG1847 mRNA splicing factor [ 98.4 8.6E-07 1.9E-11 101.1 10.7 58 197-255 178-235 (878)
77 KOG0124 Polypyrimidine tract-b 98.4 4.9E-07 1.1E-11 97.1 8.3 81 58-141 208-288 (544)
78 KOG1457 RNA binding protein (c 98.4 1.2E-06 2.6E-11 89.1 10.0 84 60-145 34-120 (284)
79 KOG4208 Nucleolar RNA-binding 98.4 9.8E-07 2.1E-11 89.2 8.2 80 57-139 46-126 (214)
80 KOG0110 RNA-binding protein (R 98.3 9.5E-07 2.1E-11 102.6 8.4 80 61-141 516-596 (725)
81 KOG0123 Polyadenylate-binding 98.3 9.5E-07 2.1E-11 99.5 8.2 74 61-143 2-75 (369)
82 KOG0146 RNA-binding protein ET 98.3 1.2E-06 2.5E-11 91.1 6.9 81 59-143 18-101 (371)
83 KOG1548 Transcription elongati 98.3 2.8E-06 6E-11 91.6 10.0 88 53-144 127-222 (382)
84 KOG4212 RNA-binding protein hn 98.2 2.3E-06 5E-11 94.1 7.8 77 56-140 532-608 (608)
85 KOG0533 RRM motif-containing p 98.2 3.7E-06 8E-11 88.7 8.9 85 57-145 80-164 (243)
86 KOG4212 RNA-binding protein hn 98.2 4.2E-06 9.1E-11 92.1 9.4 77 59-139 43-120 (608)
87 KOG4209 Splicing factor RNPS1, 98.1 5.6E-06 1.2E-10 87.4 7.4 83 57-143 98-180 (231)
88 KOG0226 RNA-binding proteins [ 98.1 3.4E-06 7.5E-11 87.5 4.9 77 59-138 189-265 (290)
89 KOG0106 Alternative splicing f 98.1 3.1E-06 6.7E-11 87.6 4.1 71 61-142 2-72 (216)
90 KOG0116 RasGAP SH3 binding pro 98.0 1.9E-05 4.1E-10 89.6 10.4 79 60-142 288-366 (419)
91 KOG4205 RNA-binding protein mu 98.0 4.4E-06 9.6E-11 91.4 5.1 83 59-145 5-87 (311)
92 KOG4205 RNA-binding protein mu 97.9 1.3E-05 2.7E-10 87.9 5.7 82 60-145 97-178 (311)
93 KOG4454 RNA binding protein (R 97.9 5.6E-06 1.2E-10 84.2 2.0 75 60-139 9-83 (267)
94 KOG4660 Protein Mei2, essentia 97.8 1.6E-05 3.5E-10 90.5 4.1 72 57-136 72-143 (549)
95 KOG1190 Polypyrimidine tract-b 97.8 0.00019 4.1E-09 79.1 11.7 78 60-145 297-375 (492)
96 KOG1457 RNA binding protein (c 97.7 2.7E-05 5.8E-10 79.6 4.0 67 57-130 207-273 (284)
97 KOG1995 Conserved Zn-finger pr 97.7 9.6E-05 2.1E-09 80.6 7.7 85 57-144 63-155 (351)
98 PF11608 Limkain-b1: Limkain b 97.6 0.00021 4.6E-09 62.9 7.4 68 61-141 3-75 (90)
99 PF04059 RRM_2: RNA recognitio 97.6 0.00036 7.7E-09 63.9 8.9 81 61-144 2-88 (97)
100 KOG0120 Splicing factor U2AF, 97.5 0.00017 3.8E-09 83.0 6.5 82 60-144 289-370 (500)
101 COG5175 MOT2 Transcriptional r 97.3 0.00076 1.6E-08 72.6 9.1 83 60-143 114-203 (480)
102 KOG4206 Spliceosomal protein s 97.3 0.0011 2.4E-08 68.5 9.1 79 55-141 141-220 (221)
103 KOG4676 Splicing factor, argin 97.2 0.00015 3.2E-09 79.5 1.9 74 62-137 9-83 (479)
104 KOG0151 Predicted splicing reg 97.0 0.00051 1.1E-08 80.1 4.5 26 693-718 698-723 (877)
105 KOG4210 Nuclear localization s 97.0 0.00053 1.2E-08 74.8 3.4 81 60-144 185-265 (285)
106 KOG0112 Large RNA-binding prot 96.8 0.0041 8.8E-08 74.8 9.4 83 57-148 452-536 (975)
107 KOG0147 Transcriptional coacti 96.8 0.0007 1.5E-08 77.4 2.4 80 58-141 177-256 (549)
108 KOG0106 Alternative splicing f 96.7 0.0011 2.3E-08 69.0 3.2 70 57-137 96-165 (216)
109 PF08777 RRM_3: RNA binding mo 96.7 0.0044 9.5E-08 57.8 6.6 69 60-137 1-74 (105)
110 KOG1855 Predicted RNA-binding 96.7 0.0018 3.8E-08 72.1 4.5 78 52-129 223-310 (484)
111 KOG4849 mRNA cleavage factor I 96.4 0.014 3.1E-07 63.4 9.3 78 61-141 81-161 (498)
112 KOG0120 Splicing factor U2AF, 96.4 0.0081 1.8E-07 69.6 8.0 65 76-140 425-489 (500)
113 KOG0112 Large RNA-binding prot 96.3 0.0011 2.4E-08 79.5 0.6 98 56-157 368-465 (975)
114 KOG1456 Heterogeneous nuclear 96.3 0.015 3.3E-07 63.8 8.8 78 60-145 120-201 (494)
115 KOG1190 Polypyrimidine tract-b 96.2 0.011 2.4E-07 65.6 7.2 83 53-142 407-490 (492)
116 KOG1456 Heterogeneous nuclear 96.1 0.056 1.2E-06 59.5 12.1 83 55-145 282-365 (494)
117 KOG4211 Splicing factor hnRNP- 95.9 0.036 7.7E-07 63.2 9.7 76 60-139 103-178 (510)
118 PF14605 Nup35_RRM_2: Nup53/35 95.7 0.02 4.4E-07 46.6 5.2 52 61-122 2-53 (53)
119 KOG0129 Predicted RNA-binding 95.6 0.032 7E-07 63.9 8.1 64 59-125 258-326 (520)
120 KOG3152 TBP-binding protein, a 95.6 0.0064 1.4E-07 63.9 2.3 75 59-134 73-157 (278)
121 KOG4211 Splicing factor hnRNP- 95.4 0.048 1E-06 62.2 8.4 77 60-143 10-86 (510)
122 PF08312 cwf21: cwf21 domain; 95.4 0.042 9E-07 43.4 5.6 40 701-741 5-44 (46)
123 KOG2314 Translation initiation 95.2 0.025 5.5E-07 65.0 5.5 75 60-138 58-139 (698)
124 KOG2416 Acinus (induces apopto 95.2 0.038 8.3E-07 64.0 6.9 78 58-144 442-523 (718)
125 KOG0796 Spliceosome subunit [R 95.1 0.025 5.3E-07 61.7 4.7 24 696-719 218-241 (319)
126 PF05172 Nup35_RRM: Nup53/35/4 95.1 0.077 1.7E-06 49.0 7.3 79 60-141 6-90 (100)
127 KOG1548 Transcription elongati 95.1 0.058 1.3E-06 59.1 7.4 74 59-139 264-348 (382)
128 KOG4307 RNA binding protein RB 95.0 0.12 2.7E-06 60.9 10.3 75 61-139 868-943 (944)
129 PF04847 Calcipressin: Calcipr 94.8 0.075 1.6E-06 54.5 7.0 64 73-145 8-73 (184)
130 PF02037 SAP: SAP domain; Int 94.7 0.041 9E-07 40.8 3.7 33 513-545 2-34 (35)
131 KOG0129 Predicted RNA-binding 94.5 0.074 1.6E-06 61.1 6.7 63 59-124 369-432 (520)
132 KOG2193 IGF-II mRNA-binding pr 94.2 0.041 8.8E-07 61.4 3.7 73 62-143 3-76 (584)
133 KOG2888 Putative RNA binding p 94.2 0.019 4.1E-07 62.1 1.1 14 354-367 82-95 (453)
134 KOG2253 U1 snRNP complex, subu 93.9 0.072 1.6E-06 62.7 5.3 72 56-139 36-107 (668)
135 smart00513 SAP Putative DNA-bi 93.8 0.1 2.2E-06 38.7 4.1 33 513-545 2-34 (35)
136 KOG1365 RNA-binding protein Fu 93.4 0.34 7.3E-06 53.8 8.8 76 60-139 280-358 (508)
137 KOG2888 Putative RNA binding p 93.3 0.029 6.4E-07 60.7 0.6 9 615-623 221-229 (453)
138 PF08952 DUF1866: Domain of un 93.1 0.39 8.5E-06 47.2 8.0 53 76-140 52-104 (146)
139 KOG4307 RNA binding protein RB 93.1 0.02 4.3E-07 67.2 -1.0 66 657-738 25-90 (944)
140 KOG0115 RNA-binding protein p5 93.0 0.21 4.5E-06 52.9 6.3 63 61-127 32-94 (275)
141 KOG0128 RNA-binding protein SA 92.9 0.12 2.6E-06 62.4 5.1 78 61-142 737-814 (881)
142 PF15023 DUF4523: Protein of u 92.9 0.38 8.2E-06 46.8 7.5 75 56-141 82-160 (166)
143 PF08675 RNA_bind: RNA binding 92.6 0.5 1.1E-05 42.0 7.2 58 58-126 6-63 (87)
144 KOG1996 mRNA splicing factor [ 92.3 0.31 6.7E-06 52.4 6.6 62 75-139 301-363 (378)
145 KOG2068 MOT2 transcription fac 91.7 0.077 1.7E-06 58.2 1.4 82 61-143 78-163 (327)
146 KOG4368 Predicted RNA binding 90.8 0.34 7.3E-06 56.3 5.4 8 251-258 3-10 (757)
147 cd00197 VHS_ENTH_ANTH VHS, ENT 90.1 1.2 2.5E-05 41.9 7.6 99 336-443 17-115 (115)
148 KOG2202 U2 snRNP splicing fact 89.8 0.15 3.2E-06 54.0 1.4 61 76-140 84-145 (260)
149 KOG1847 mRNA splicing factor [ 89.7 0.17 3.8E-06 59.1 2.0 59 197-258 416-474 (878)
150 KOG4574 RNA-binding protein (c 89.2 0.44 9.5E-06 57.7 4.7 77 61-146 299-377 (1007)
151 KOG0128 RNA-binding protein SA 89.1 0.04 8.6E-07 66.4 -3.9 68 61-131 668-735 (881)
152 KOG4246 Predicted DNA-binding 88.6 0.2 4.2E-06 60.2 1.4 12 651-662 252-263 (1194)
153 KOG2071 mRNA cleavage and poly 87.7 1 2.2E-05 53.1 6.4 104 323-442 6-110 (579)
154 KOG0835 Cyclin L [General func 87.1 3.5 7.5E-05 45.5 9.5 20 704-723 238-257 (367)
155 KOG2135 Proteins containing th 86.8 0.52 1.1E-05 53.8 3.3 75 60-144 372-447 (526)
156 KOG4285 Mitotic phosphoprotein 86.6 2.9 6.2E-05 45.5 8.4 64 61-135 198-261 (350)
157 PF03467 Smg4_UPF3: Smg-4/UPF3 83.9 3.4 7.3E-05 42.2 7.3 87 59-146 6-101 (176)
158 KOG2548 SWAP mRNA splicing reg 82.4 6.4 0.00014 45.7 9.3 12 538-549 105-116 (653)
159 KOG0113 U1 small nuclear ribon 82.3 2.3 5E-05 46.1 5.5 17 426-442 73-89 (335)
160 KOG0105 Alternative splicing f 82.0 5.6 0.00012 40.5 7.7 68 60-137 115-184 (241)
161 PF10309 DUF2414: Protein of u 78.8 7.9 0.00017 32.7 6.5 54 61-125 6-62 (62)
162 KOG4660 Protein Mei2, essentia 78.5 3.2 7E-05 48.5 5.5 48 97-144 423-474 (549)
163 KOG0835 Cyclin L [General func 76.9 4.3 9.2E-05 44.8 5.5 11 618-628 237-247 (367)
164 PF03880 DbpA: DbpA RNA bindin 75.1 12 0.00026 32.4 7.0 67 62-140 2-74 (74)
165 KOG4019 Calcineurin-mediated s 72.7 7.3 0.00016 39.6 5.6 77 60-145 10-92 (193)
166 KOG1365 RNA-binding protein Fu 72.3 9.4 0.0002 42.9 6.8 60 61-124 162-225 (508)
167 KOG0796 Spliceosome subunit [R 72.0 1.7 3.7E-05 47.7 1.1 6 384-389 45-50 (319)
168 PF07576 BRAP2: BRCA1-associat 71.3 30 0.00066 32.6 9.1 79 60-143 12-95 (110)
169 KOG0965 Predicted RNA-binding 70.7 1.5 3.2E-05 52.7 0.2 59 203-261 528-586 (988)
170 KOG2548 SWAP mRNA splicing reg 68.9 2.6 5.6E-05 48.8 1.7 25 515-539 207-233 (653)
171 KOG2318 Uncharacterized conser 68.3 14 0.0003 43.7 7.3 82 58-139 172-304 (650)
172 KOG2193 IGF-II mRNA-binding pr 67.5 0.92 2E-05 51.0 -2.1 74 60-139 80-153 (584)
173 KOG4210 Nuclear localization s 60.3 5.6 0.00012 43.8 2.2 83 59-144 87-169 (285)
174 PF11767 SET_assoc: Histone ly 59.3 39 0.00085 29.0 6.6 55 71-137 11-65 (66)
175 KOG0804 Cytoplasmic Zn-finger 58.3 23 0.00049 40.8 6.5 69 59-132 73-142 (493)
176 KOG2591 c-Mpl binding protein, 57.2 21 0.00046 42.0 6.2 70 58-137 173-246 (684)
177 KOG1924 RhoA GTPase effector D 55.7 22 0.00048 43.5 6.1 46 317-365 695-742 (1102)
178 PF01417 ENTH: ENTH domain; I 54.2 30 0.00065 33.0 5.9 98 336-440 20-118 (125)
179 KOG4454 RNA binding protein (R 47.1 4.9 0.00011 42.0 -0.8 69 56-128 76-148 (267)
180 PF00790 VHS: VHS domain; Int 45.0 1.2E+02 0.0025 29.6 8.5 83 350-445 36-120 (140)
181 KOG2891 Surface glycoprotein [ 39.4 18 0.00038 39.0 1.9 69 62-130 151-247 (445)
182 PF10567 Nab6_mRNP_bdg: RNA-re 35.7 65 0.0014 35.4 5.4 84 58-141 13-106 (309)
183 KOG4410 5-formyltetrahydrofola 35.2 1.9E+02 0.0042 31.7 8.7 54 57-118 327-380 (396)
184 cd03561 VHS VHS domain family; 32.8 1.8E+02 0.004 28.0 7.7 79 351-444 32-113 (133)
185 KOG0415 Predicted peptidyl pro 32.6 11 0.00024 41.8 -0.9 12 406-417 255-266 (479)
186 smart00288 VHS Domain present 31.6 2.5E+02 0.0053 27.2 8.3 80 352-444 33-112 (133)
187 cd03567 VHS_GGA VHS domain fam 30.6 2.3E+02 0.0049 27.9 7.9 82 353-443 35-116 (139)
188 KOG1049 Polyadenylation factor 30.0 41 0.00089 39.7 3.0 8 518-525 186-193 (538)
189 KOG2045 5'-3' exonuclease XRN1 29.9 41 0.00089 42.1 3.0 45 377-421 30-75 (1493)
190 PF01603 B56: Protein phosphat 29.1 2.2E+02 0.0047 33.1 8.7 112 316-446 208-326 (409)
191 COG0724 RNA-binding proteins ( 28.7 66 0.0014 33.1 4.1 38 56-93 221-258 (306)
192 KOG1924 RhoA GTPase effector D 28.5 1.1E+02 0.0025 37.8 6.3 14 399-412 790-803 (1102)
193 PF07498 Rho_N: Rho terminatio 28.3 81 0.0018 24.5 3.5 35 511-545 1-37 (43)
194 cd03568 VHS_STAM VHS domain fa 27.4 2.2E+02 0.0047 28.1 7.2 80 351-444 32-111 (144)
195 KOG1869 Splicing coactivator S 25.2 1.7E+02 0.0036 33.5 6.5 36 702-738 63-98 (425)
196 KOG2002 TPR-containing nuclear 24.0 2.7E+02 0.006 35.5 8.6 22 102-123 202-223 (1018)
197 PF11116 DUF2624: Protein of u 22.3 1.1E+02 0.0024 27.6 3.6 36 507-542 7-42 (85)
198 COG5638 Uncharacterized conser 20.7 2.9E+02 0.0062 31.8 7.1 37 57-93 143-184 (622)
199 KOG4483 Uncharacterized conser 20.4 1E+02 0.0022 35.2 3.6 55 61-124 392-446 (528)
200 smart00540 LEM in nuclear memb 20.2 1.8E+02 0.0039 23.0 3.9 35 512-546 3-41 (44)
No 1
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=100.00 E-value=1e-123 Score=1038.74 Aligned_cols=674 Identities=53% Similarity=0.814 Sum_probs=605.1
Q ss_pred ChhhhhhHHHHHHHHHhhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEecCCCCCCHHHHHHH
Q 003091 1 MEELKHEQEMRERRNQEREHWRDGRHTESSAPSSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSPQVDENFLLRT 80 (848)
Q Consensus 1 ~Eelk~~qe~re~r~~~r~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~gs~~~~d~~~t~LfVgNLp~~vte~~L~~~ 80 (848)
+||||++||+||+|++.|.... .+++.+++.++++++|..++++|. +|+|+++||.+||||||||++.|+++.|...
T Consensus 118 keELkr~QE~Re~R~~~r~~~~--~~~~d~~~s~r~~~~p~~~~~s~~-~gsfDdgDP~TTNlyv~Nlnpsv~E~~ll~t 194 (877)
T KOG0151|consen 118 KEELKRIQEEREERHKDRHHLE--DPQSDSAVSSRFDPLPSRFDPSGR-PGSFDDGDPQTTNLYVGNLNPSVDENFLLRT 194 (877)
T ss_pred HHHHHHHHHHHHHHhhhhhccc--ccccCcchhhccCCCccccCCCCC-CCcCCCCCCcccceeeecCCccccHHHHHHH
Confidence 5899999999999999988663 345567788999999999988885 9999999999999999999999999999999
Q ss_pred hccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEeccCCCCCCCCCCCCCCCcccc
Q 003091 81 FGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVALPSQALPAPPPGQMAI 160 (848)
Q Consensus 81 F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V~~ak~~~~p~~~~~~p~p~~~~~ 160 (848)
|+.||+|.+|+|||||++.+..+.+.||||.|+++.+|++|+..|||..+.++.|+++||+++++|+.+.+.||++++..
T Consensus 195 fGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~gWgk~V~ip~~p~~ipp~~h~~~ 274 (877)
T KOG0151|consen 195 FGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLGWGKAVPIPNIPIYIPPPLHEAT 274 (877)
T ss_pred hcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeeccccccccCCccccCCChhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCccccCCCCCCCCcCCCCCCcccccCCCCCCcccCCCCchhhhhHHHHHHHHHhhccHHHHHHHHHhcCCCCccc
Q 003091 161 RSKEGATVILSGPSGPPVTTVPSQNSELVLTPNVPDIMVIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFN 240 (848)
Q Consensus 161 ~~~~g~~~~~~gp~~pp~~~~~~~~~~~~~~~~~~~i~v~~P~d~~~~~~Id~~a~~V~~~G~~FE~~l~~~e~~np~f~ 240 (848)
.++.+.+..+.+..+| ..++|+++++++.+++++.+.|.+|+|.++.++||+||.||++.|+.||+|||+++.+||+|+
T Consensus 275 lp~p~s~Lpfnaqp~p-~~~~pn~N~e~~~~edv~~i~Vvip~d~~L~~vidrM~~fV~~egp~fea~im~re~~nplF~ 353 (877)
T KOG0151|consen 275 LPPPPSNLPFNAQPGP-PKSLPNQNAELVNTEDVEDILVVIPTDRHLLMVIDRMAEFVVREGPMFEAMIMERERGNPLFS 353 (877)
T ss_pred CCCCccCCcccCCCCc-cccCCCccccccCcCCccceeEecCchHHHHHHHHHHHHHHhccCccHHHHHHHhhccChhHH
Confidence 8888888888877676 668899999999899999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCcceeeEEeeeeccCCccccccCCccccccCCCcccCCCCCCCCCCchhhhcccccccccCCCCCCCCCCCH
Q 003091 241 FLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPALPTSKSPEHEKESGTTYAAGRSRRAEPERTLTD 320 (848)
Q Consensus 241 FL~d~~s~~h~YYrwkl~s~~~gd~~~~~~~~pf~~~~~~~~w~PP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 320 (848)
|||+.+++.|+||+||||+|+|||+++.|+++||.||.+|++|+||+++......++.+..++++.+. ...++.|+.
T Consensus 354 flfen~s~~htyyrwklySilQgdT~~ewr~e~frmfknggrwipppin~~~~~mp~ee~~~t~a~~e---~~~k~~Ltd 430 (877)
T KOG0151|consen 354 FLFENGSPAHTYYRWKLYSILQGDTPQEWRTEPFRMFKNGGRWIPPPINNYRKGMPEEEERSTDAEGE---SEDKGALTD 430 (877)
T ss_pred HHHhcCchHHHHHHHHHHHHHcCCCHHHhhhhhhhhcccCceecCCCCCcccccCchhhhcccccccc---hhhhcccch
Confidence 99999999999999999999999999999999999999999999999988766555555555666543 345678999
Q ss_pred HHHHHHHHHHHhcccCHHHHHHHHHHHHhccccHHHHHHHHHHHhcccCCCcccchheeeeehhhhccCCCCCCCccchH
Q 003091 321 SQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYR 400 (848)
Q Consensus 321 ~~~~~l~~lL~~Lt~tr~sI~~~~~w~l~h~~~a~eiv~~l~~~l~~~~~~~~~KL~~LYLinDIL~ns~~~~~~a~~yr 400 (848)
.+|++|++||+.|||.|.+|.+||.|||+|+++|.+||+||+++|+..++++++||++|||||||||||.++|+|||.||
T Consensus 431 ~qRdklE~liR~LTpEk~sIg~aM~FalenA~aa~EI~eci~eSlt~~~t~~~kKiarLyLvsDIL~N~sarv~nas~YR 510 (877)
T KOG0151|consen 431 LQRDKLEDLIRGLTPEKSSIGDAMVFALENADAAGEIVECITESLTNKETPLPKKIARLYLVSDILHNSSARVANASAYR 510 (877)
T ss_pred HHHHHHHHHHHhcCcccchHHHHHHHHHhhhhhHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhhhhhhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHhhccCccCcHHHHHHHHHHhccCCCCCCccccccCCCCccc
Q 003091 401 TKFEATLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWSDWFLFSDAYVNGLRATFLRSGNSGVTPFHSICGDAPEI 480 (848)
Q Consensus 401 ~~fe~~Lp~if~~l~~~~~~~~~r~~ae~~k~kV~~vL~iWe~~~vf~~~~i~~L~~~f~~~~~~~~~~~~~~~~~~~~~ 480 (848)
..||+.|+.||..|+.+|+++.|||+++.|+++|++||++|++|.||+.+||.+|+++|++ .+++++++++ +++.+++
T Consensus 511 ~~FEa~L~~Ifd~l~~~yr~I~gRIkaE~fkqRV~kVirvWedW~ifpe~~l~~l~~~Flg-~~~~~~~~~s-e~~~~di 588 (877)
T KOG0151|consen 511 KSFEATLEDIFDDLNDLYRSIGGRIKAEAFKQRVMKVIRVWEDWAIFPEDFLIGLQNTFLG-LNNIVTEKES-EADAPDI 588 (877)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHhc-CCCCcccccc-cccchhh
Confidence 9999999999999999999999999999999999999999999999999999999999999 4566788888 8899999
Q ss_pred cccCCCccc--ccccccchhhHhhhCchhhHHHhhcCChHHHHHHHHHcCccccCChHHHHHHHHhHHHHhhhcccccch
Q 003091 481 DKKNNSEDT--CDLSKTNQDTALAMGKGAAIKELMNLPLSELERRCRHNGLSLVGGREMMVARLLSLEDAEKQRGYELDD 558 (848)
Q Consensus 481 e~~~~~~d~--~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~gl~~~~~~~~~~~rL~~~~~~~~~~~~~~~~ 558 (848)
++.-...++ .||.+++ + .++-.+++..++++|+..| ++++..-++..++++++.++.....|..+|+..
T Consensus 589 e~~~~a~~eedldgvple--~------~~agip~~n~pi~eld~~~-l~~dd~ldgipm~~e~~ss~s~~~~~sk~e~vd 659 (877)
T KOG0151|consen 589 ENAPLAGNEEDLDGVPLE--D------EDAGIPLMNTPIDELDGRP-LNLDDDLDGIPMMVETKSSLSDPETPSKWEAVD 659 (877)
T ss_pred ccCcccCchhhccCCCch--h------hhcCCccccCchhhhcccc-ccccccccCceeeeeeccccCCCcccccccccC
Confidence 888775444 4565543 2 2345678889999999999 999999999999999999999999999988777
Q ss_pred hh-hhcccCCCCCCCCCCCccccCCccccCCcCCCCCchhhhhhcccCCcccccccCCCChhhhhhhhhhcCCCCccccc
Q 003091 559 DL-KSAHSQSSSGRYSRGWKETNMEAESMGLSGWNGYEEDEKLSQAVGSVPLGTMLTTPQPEIKAFTKKEKNDPVLPASK 637 (848)
Q Consensus 559 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 637 (848)
.. +.+|+.+++. |-.+...++++ .++|.++++.. .|| |
T Consensus 660 ~~~~~~q~vstsk-----we~~~~~~~~~----~~s~~~~e~ed----------------------------~~~----k 698 (877)
T KOG0151|consen 660 ESFKEGQAVSTSK-----WEHVDDEFEPK----KNSYDEVEEED----------------------------NPV----K 698 (877)
T ss_pred cccccccccchhh-----hhhcccccccc----cccccchhccc----------------------------ccc----c
Confidence 66 7777765433 66666666654 46666665522 233 8
Q ss_pred cccccCCchHHHhhccCCCCcccCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 003091 638 WALEDDESDDEQKRSSRGLGLSYSSSGSENAGDGPSKADDVDFTIDASIPVQPDSGMNEEQRQKLRRLEVSLIEYRESLE 717 (848)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~kl~~~~~~~~~~r~~~e 717 (848)
| +|+.+|+++.. +++ |+++.| ..+.+.+....+.|+..+++.+++.+.+++++.+++++.+|++.++
T Consensus 699 ~---~de~~~~~~~~-------~ss-~~~~~d--~l~sg~~~lk~~~sv~~qpe~~~d~~l~q~~r~~~~a~~e~~e~~~ 765 (877)
T KOG0151|consen 699 Y---DDEDRDKLRDI-------ESS-GSDNQD--ELESGERDLKPGSSVREQPENERDRLLRQDVRVEAIALIEYREADE 765 (877)
T ss_pred c---chhhhHHHhhh-------hhh-cccccc--ccCCCCccCCCCCccccChhhHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 9 66667777655 444 888888 4567778888889999999999999999999999999999999999
Q ss_pred HhccCChHHHHHHHHHHhhhhhhhcCCCC
Q 003091 718 ERGIKSSEEIEKKVAIHRKRLESEYGLAD 746 (848)
Q Consensus 718 e~~~~~~ee~~~~~~~~r~~~~~~~~~~~ 746 (848)
|++.++.++++++.+..+++++..||.+.
T Consensus 766 e~~~k~s~~~~rk~e~~~~r~e~~~g~S~ 794 (877)
T KOG0151|consen 766 EQGMKRSEDKERKVEIERKRKERKRGHSG 794 (877)
T ss_pred hhhccchhhhhhhcchhHHHHHhhhcccC
Confidence 99999999999999999999999988875
No 2
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA.
Probab=99.87 E-value=1.1e-22 Score=193.11 Aligned_cols=121 Identities=23% Similarity=0.431 Sum_probs=107.6
Q ss_pred HHHHHHHhcccCHHHHHHHHHHHHhccccHHHHHHHHHHHhcccCCCcccchheeeeehhhhccCCCCCCCccchHHHHH
Q 003091 325 EFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTKFE 404 (848)
Q Consensus 325 ~l~~lL~~Lt~tr~sI~~~~~w~l~h~~~a~eiv~~l~~~l~~~~~~~~~KL~~LYLinDIL~ns~~~~~~a~~yr~~fe 404 (848)
.|+.+|+.|++++++|+++|.|||+|..+|.+||++|.+++.. ++.++||++|||+|||||||. .+.+..|...|.
T Consensus 1 ~f~~~L~~L~~s~~~I~~lt~~~~~~~~~a~~Iv~~i~~~~~~--~~~~~kL~~LYlindIl~n~~--~~~~~~f~~~~~ 76 (121)
T smart00582 1 AFEQKLESLNNSQESIQTLTKWAIEHASHAKEIVELWEKYIKK--APPPRKLPLLYLLDSIVQNSK--RKYGSEFGDELG 76 (121)
T ss_pred ChHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCccceehhHHhHHHHHHHHh--hccHHHHHHHHH
Confidence 3789999999999999999999999999999999999999865 445799999999999999998 455778999999
Q ss_pred HhhHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHhhccCccCcHHHHHHHHH
Q 003091 405 ATLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWSDWFLFSDAYVNGLRA 457 (848)
Q Consensus 405 ~~Lp~if~~l~~~~~~~~~r~~ae~~k~kV~~vL~iWe~~~vf~~~~i~~L~~ 457 (848)
+.++.+|.++..... +++++||.+||++|++|.|||+++|.+|++
T Consensus 77 ~~~~~~~~~~~~~~~--------~~~~~ki~kll~iW~~~~iF~~~~i~~L~~ 121 (121)
T smart00582 77 PVFQDALRDVLGAAN--------DETKKKIRRLLNIWEERGIFPPSVLRPLRE 121 (121)
T ss_pred HHHHHHHHHHHHhCC--------HHHHHHHHHHHHHHhcCCCCCHHHHHHhhC
Confidence 999998876654321 689999999999999999999999999873
No 3
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=99.77 E-value=2.4e-17 Score=183.17 Aligned_cols=133 Identities=21% Similarity=0.392 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHHhc--ccCHHHHHHHHHHHHhcccc---HHHHHHHHHHHhcccCCCcccchheeeeehhhhccCCCCCC
Q 003091 320 DSQRDEFEDMLRAL--TLERSQIKEAMGFALDNADA---AGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVK 394 (848)
Q Consensus 320 ~~~~~~l~~lL~~L--t~tr~sI~~~~~w~l~h~~~---a~eiv~~l~~~l~~~~~~~~~KL~~LYLinDIL~ns~~~~~ 394 (848)
..+..+|+.+|+.+ |||++.|..++.|+++++++ ++-|+..|...++...+-+..+||+||||||+||||. ++
T Consensus 100 ~l~~~~~~~~l~~~~~~c~kd~is~~k~w~f~~~~s~~~~e~~~~~l~n~~~~~~~~~~lrlh~~ylind~~~hcq--rk 177 (757)
T KOG4368|consen 100 QLDMNEFDNLLQPIIDTCTKDAISAGKNWMFSNAKSPPHCELMAGHLRNRITADGAHFELRLHLIYLINDVLHHCQ--RK 177 (757)
T ss_pred cCCHHHHHHHHHHHHHHHhHHHHHHhhhhhhhcCCCchHHHHHHHHHHhhhcccccchhhhhhhHHHHHHHHHHHH--HH
Confidence 35678899999988 89999999999999999997 6677788888888888889999999999999999997 77
Q ss_pred CccchHHHHHHhhHHHHHHHHHHHhhhhcccch-HHHHHHHHHHHHhhccCccCcHHHHHHHHHHhccCC
Q 003091 395 NASAYRTKFEATLPDIMESFNDLYRSITGRITA-EALKERVLKVLQVWSDWFLFSDAYVNGLRATFLRSG 463 (848)
Q Consensus 395 ~a~~yr~~fe~~Lp~if~~l~~~~~~~~~r~~a-e~~k~kV~~vL~iWe~~~vf~~~~i~~L~~~f~~~~ 463 (848)
.+-....++..++..| || .+.+.. |.-.+++.+||.+||.+.||...+|.+|+++.++..
T Consensus 178 ~~~~~~~~l~~~v~~~-------yc--~~~~~~~e~~~~~~~~ll~~we~~~yf~ds~~~ql~~~~~~~~ 238 (757)
T KOG4368|consen 178 QARELLAALQKVVVPI-------YC--TSFLAVEEDKQQKIARLLQLWEKNGYFDDSIIQQLQSPALGLG 238 (757)
T ss_pred HHHHHHHHHHHHhHHH-------HH--hhhhhhHhHHHHHHHHHHHHHhhcCchhHHHHHHhhhhhhhhh
Confidence 6665666666665443 33 222233 455668899999999999999999999999998754
No 4
>KOG2669 consensus Regulator of nuclear mRNA [RNA processing and modification]
Probab=99.75 E-value=3.8e-18 Score=183.03 Aligned_cols=128 Identities=17% Similarity=0.276 Sum_probs=114.2
Q ss_pred HHHHHHHHHHHHhcccCHHHHHHHHHHHHhccccHHHHHHHHHHHhcccCCCcccchheeeeehhhhccCCCCCCCccch
Q 003091 320 DSQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAY 399 (848)
Q Consensus 320 ~~~~~~l~~lL~~Lt~tr~sI~~~~~w~l~h~~~a~eiv~~l~~~l~~~~~~~~~KL~~LYLinDIL~ns~~~~~~a~~y 399 (848)
....+.|...|..|+.|+++|+.++.|||.|..+|..||++|.+.|... +..+||.+|||+|||+||| ++.+..|
T Consensus 3 ~fsee~l~~kL~~L~~TQeSIqtlS~Wli~hkk~a~~IV~~Wl~~~~~~--~~~~Kl~llYLaNDVvQns---krk~~ef 77 (325)
T KOG2669|consen 3 AFSEEALEKKLAELSNTQESIQTLSLWLIHHKKHARLIVDVWLKELKKS--SVNHKLTLLYLANDVVQNS---KRKGPEF 77 (325)
T ss_pred cccHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcc--CCCceeeehhhhHHHHHHh---hhcCchh
Confidence 3445679999999999999999999999999999999999999999654 4789999999999999999 5677789
Q ss_pred HHHHHHhhHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHhhccCccCcHHHHHHHHHHhc
Q 003091 400 RTKFEATLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWSDWFLFSDAYVNGLRATFL 460 (848)
Q Consensus 400 r~~fe~~Lp~if~~l~~~~~~~~~r~~ae~~k~kV~~vL~iWe~~~vf~~~~i~~L~~~f~ 460 (848)
...|.++++..|.|+..-.. .+.+.+|.+||+||++++||++.++..|+..|.
T Consensus 78 ~~ef~~v~~~a~~~i~~~~~--------~~~k~~l~Rl~nIw~eR~Vf~~~~~~~l~~~l~ 130 (325)
T KOG2669|consen 78 VDEFWPVVLKAFAHIVEETD--------VKCKKKLGRLINIWEERNVFSPESLVDLEESLG 130 (325)
T ss_pred HHHHHHHHHHHHHHHHHhcc--------hhhhHHHHHHHHHHHHhccCCHHHHHHHHHHhc
Confidence 99999999999987764433 355899999999999999999999999999987
No 5
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.62 E-value=6.5e-15 Score=144.33 Aligned_cols=85 Identities=27% Similarity=0.454 Sum_probs=79.2
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEE
Q 003091 58 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 137 (848)
Q Consensus 58 ~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V 137 (848)
..+++|||+|||+.+++++|+++|.+||.|.+|+|+ .+..+++++|||||+|.+.++|+.|+..|||..|+|+.|+|
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~---~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V 108 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVI---VDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRV 108 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEE---ecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 357799999999999999999999999999999999 47788999999999999999999999999999999999999
Q ss_pred EeccCCCC
Q 003091 138 GWGKSVAL 145 (848)
Q Consensus 138 ~~ak~~~~ 145 (848)
.|++....
T Consensus 109 ~~a~~~~~ 116 (144)
T PLN03134 109 NPANDRPS 116 (144)
T ss_pred EeCCcCCC
Confidence 99986543
No 6
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=99.58 E-value=5.9e-15 Score=138.89 Aligned_cols=107 Identities=24% Similarity=0.505 Sum_probs=88.7
Q ss_pred HHHHHHhc---ccCHHHHHHHHHHHHhccccHHHHHHHHHHHhcccCCCcccchheeeeehhhhccCCCCCCCccchHHH
Q 003091 326 FEDMLRAL---TLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTK 402 (848)
Q Consensus 326 l~~lL~~L---t~tr~sI~~~~~w~l~h~~~a~eiv~~l~~~l~~~~~~~~~KL~~LYLinDIL~ns~~~~~~a~~yr~~ 402 (848)
|...|..| +.++.+|+.++.||++|..+|.+||++|.+.+.. ++..+||+.|||+|||++||.. + |...
T Consensus 4 ~~~~l~~L~~~~~S~~~I~~lt~~a~~~~~~a~~iv~~i~~~i~~--~~~~~KL~~LYL~dsIvkn~~~--~----~~~~ 75 (114)
T cd03562 4 YNALLEKLTFNKNSQPSIQTLTKLAIENRKHAKEIVEIIEKHIKK--CPPEQKLPLLYLLDSIVKNVGR--K----YKEF 75 (114)
T ss_pred HHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCcccchHHHHHHHHHHHHccc--c----hHHH
Confidence 44555555 4599999999999999999999999999999954 4568999999999999999973 3 6667
Q ss_pred HHHhhHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHhhccCccCc
Q 003091 403 FEATLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWSDWFLFS 448 (848)
Q Consensus 403 fe~~Lp~if~~l~~~~~~~~~r~~ae~~k~kV~~vL~iWe~~~vf~ 448 (848)
|...++.+|. .+|.. ..++.++||.+||++|+++.+|+
T Consensus 76 ~~~~~~~~f~---~~~~~-----~~~~~r~kl~rl~~iW~~~~~f~ 113 (114)
T cd03562 76 FSEFLVPLFL---DAYEK-----VDEKTRKKLERLLNIWEERFVFG 113 (114)
T ss_pred HHHHHHHHHH---HHHHh-----CCHHHHHHHHHHHHHccCCCCCC
Confidence 7777777774 34432 35799999999999999999997
No 7
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.49 E-value=2.2e-13 Score=151.96 Aligned_cols=83 Identities=27% Similarity=0.446 Sum_probs=77.6
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEE
Q 003091 58 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 137 (848)
Q Consensus 58 ~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V 137 (848)
..+.+|||+|||+.+++++|.++|++||.|.+|+|+ .|..++.++|||||.|.+.++|.+||..|||..|+|+.|+|
T Consensus 267 ~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~---~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V 343 (352)
T TIGR01661 267 GAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKII---RDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQV 343 (352)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEe---EcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 334589999999999999999999999999999999 47789999999999999999999999999999999999999
Q ss_pred EeccCC
Q 003091 138 GWGKSV 143 (848)
Q Consensus 138 ~~ak~~ 143 (848)
.|+..+
T Consensus 344 ~~~~~~ 349 (352)
T TIGR01661 344 SFKTNK 349 (352)
T ss_pred EEccCC
Confidence 998765
No 8
>PF01805 Surp: Surp module; InterPro: IPR000061 SWAP is derived from the Suppressor-of-White-APricot splicing regulator from Drosophila melanogaster. The domain is found in regulators responsible for pervasive, nonsex-specific alternative pre-mRNA splicing characteristics and has been found in splicing regulatory proteins []. These ancient, conserved SWAP proteins share a colinearly arrayed series of novel sequence motifs [].; GO: 0003723 RNA binding, 0006396 RNA processing; PDB: 2E5Z_A 2DT7_B 2DT6_A 1UG0_A 1X4P_A 2E60_A 1X4O_A 4DGW_B.
Probab=99.49 E-value=5.8e-15 Score=120.83 Aligned_cols=54 Identities=46% Similarity=0.838 Sum_probs=50.6
Q ss_pred hhhHHHHHHHHHhhccHHHHHHHHHhcCCCCcccccccCCCCCcceeeEEeeee
Q 003091 207 LRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSF 260 (848)
Q Consensus 207 ~~~~Id~~a~~V~~~G~~FE~~l~~~e~~np~f~FL~d~~s~~h~YYrwkl~s~ 260 (848)
++.+|++||.||+++|+.||++|++++.+||+|+||++.+|++|.||+|+|+++
T Consensus 1 ~~~~I~~tA~~Va~~G~~fE~~l~~~~~~np~F~FL~~~~~~~~~yY~~~l~~y 54 (55)
T PF01805_consen 1 LREIIDKTAEFVAKNGPEFEEKLRERERNNPQFNFLFPSDSPYHAYYRWKLAEY 54 (55)
T ss_dssp HHHHHHHHHHHHHHCSHHHHHHHHHHTTTSGGGGGGSTTSSTHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhcCHHHHHHHHHhcCCCCCCcCcCCCCCCCchHHHHHHHHh
Confidence 367999999999999999999999999999999999977799999999999764
No 9
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.40 E-value=7.6e-13 Score=147.68 Aligned_cols=81 Identities=21% Similarity=0.411 Sum_probs=76.9
Q ss_pred ccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEe
Q 003091 60 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 139 (848)
Q Consensus 60 ~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V~~ 139 (848)
.++|||+|||+.+++++|+++|++||+|.+|+|+ .+..+|+++|||||+|.+.++|.+||..|||..|.|+.|+|.|
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~---~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~ 79 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLV---RDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSY 79 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEE---EcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEe
Confidence 6799999999999999999999999999999999 4777899999999999999999999999999999999999999
Q ss_pred ccCC
Q 003091 140 GKSV 143 (848)
Q Consensus 140 ak~~ 143 (848)
+++.
T Consensus 80 a~~~ 83 (352)
T TIGR01661 80 ARPS 83 (352)
T ss_pred eccc
Confidence 8753
No 10
>smart00648 SWAP Suppressor-of-White-APricot splicing regulator. domain present in regulators which are responsible for pre-mRNA splicing processes
Probab=99.40 E-value=6e-14 Score=114.42 Aligned_cols=52 Identities=38% Similarity=0.655 Sum_probs=49.0
Q ss_pred hHHHHHHHHHhhccHHHHHHHHHhcCCCCcccccccCCCCCcceeeEEeeeec
Q 003091 209 HVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFA 261 (848)
Q Consensus 209 ~~Id~~a~~V~~~G~~FE~~l~~~e~~np~f~FL~d~~s~~h~YYrwkl~s~~ 261 (848)
.+|++||.||+++|..||++||+++.+||+|+||++ ++++|.||+|+|+++.
T Consensus 2 ~iI~~tA~~Va~~G~~fe~~l~~~~~~n~~F~FL~~-~~~~h~yy~~~l~~~~ 53 (54)
T smart00648 2 DIIDKTAQFVARNGPEFEAKLMERERNNPQFDFLKP-NDPYHAYYRKKLAEYR 53 (54)
T ss_pred cHHHHHHHHHHHhhHHHHHHHHHhcCCCCCCccCCC-CCCCcHHHHHHHHHHh
Confidence 589999999999999999999999999999999996 8999999999998653
No 11
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.39 E-value=2.4e-12 Score=143.31 Aligned_cols=85 Identities=28% Similarity=0.452 Sum_probs=79.3
Q ss_pred CCCCCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeE
Q 003091 55 DGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYE 134 (848)
Q Consensus 55 ~~d~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~ 134 (848)
......|+|||+|||+++|+++|+++|..||.|.+|+|+ .|..+++++|||||+|.+.++|..||..|||..|.+++
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~---~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~ 178 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIM---RDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKR 178 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE---ecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCce
Confidence 345668899999999999999999999999999999999 47789999999999999999999999999999999999
Q ss_pred EEEEeccC
Q 003091 135 LKIGWGKS 142 (848)
Q Consensus 135 L~V~~ak~ 142 (848)
|+|.|+++
T Consensus 179 i~V~~a~p 186 (346)
T TIGR01659 179 LKVSYARP 186 (346)
T ss_pred eeeecccc
Confidence 99999864
No 12
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.38 E-value=1.5e-12 Score=110.05 Aligned_cols=70 Identities=34% Similarity=0.620 Sum_probs=65.9
Q ss_pred EEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEE
Q 003091 63 LYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 136 (848)
Q Consensus 63 LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~ 136 (848)
|||+|||+++++++|.++|++||.|..++++. + .++..++||||.|.+.++|+.|+..|||..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~---~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMR---N-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEE---E-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccc---c-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 79999999999999999999999999999984 3 5778899999999999999999999999999999985
No 13
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=2.5e-12 Score=131.50 Aligned_cols=84 Identities=27% Similarity=0.446 Sum_probs=79.5
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEE
Q 003091 57 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 136 (848)
Q Consensus 57 d~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~ 136 (848)
-...++|-|.||+.+++|.+|.++|.+||.|..|.|. .|++||.++|||||+|.++++|.+||..|||.=++.-.|+
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvyla---rdK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILr 262 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLA---RDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILR 262 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhhccCccceeEEE---EccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEE
Confidence 3456789999999999999999999999999999999 5999999999999999999999999999999999999999
Q ss_pred EEeccCC
Q 003091 137 IGWGKSV 143 (848)
Q Consensus 137 V~~ak~~ 143 (848)
|.|++|.
T Consensus 263 vEwskP~ 269 (270)
T KOG0122|consen 263 VEWSKPS 269 (270)
T ss_pred EEecCCC
Confidence 9999975
No 14
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.36 E-value=5.6e-12 Score=140.40 Aligned_cols=85 Identities=26% Similarity=0.434 Sum_probs=77.9
Q ss_pred CccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecC--eEEE
Q 003091 59 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYE--YELK 136 (848)
Q Consensus 59 ~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G--~~L~ 136 (848)
..++|||+|||..+|+++|+++|++||.|..|+|+ .+..++++++||||+|.+.++|++||..|||..+.| ++|+
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~---~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~ 268 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNIL---RDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLT 268 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEe---ecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEE
Confidence 46789999999999999999999999999999999 477789999999999999999999999999999866 7999
Q ss_pred EEeccCCCCC
Q 003091 137 IGWGKSVALP 146 (848)
Q Consensus 137 V~~ak~~~~p 146 (848)
|.||+.....
T Consensus 269 V~~a~~~~~~ 278 (346)
T TIGR01659 269 VRLAEEHGKA 278 (346)
T ss_pred EEECCccccc
Confidence 9999876543
No 15
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.32 E-value=2.6e-12 Score=119.40 Aligned_cols=80 Identities=23% Similarity=0.425 Sum_probs=75.0
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEE
Q 003091 58 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 137 (848)
Q Consensus 58 ~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V 137 (848)
..+++||||||+..++|+.|.++|++||.|..|-+- .|..+...+||+||+|.+.++|+.|+..++|..++.++|+|
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMG---Ldr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~ 110 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMG---LDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRI 110 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEec---cccCCcCccceEEEEEecchhHHHHHHHhccCcccccceee
Confidence 467899999999999999999999999999998766 57788889999999999999999999999999999999999
Q ss_pred Eec
Q 003091 138 GWG 140 (848)
Q Consensus 138 ~~a 140 (848)
.|-
T Consensus 111 D~D 113 (153)
T KOG0121|consen 111 DWD 113 (153)
T ss_pred ecc
Confidence 994
No 16
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=9.7e-12 Score=128.65 Aligned_cols=82 Identities=27% Similarity=0.558 Sum_probs=77.2
Q ss_pred CCCCCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeE
Q 003091 55 DGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYE 134 (848)
Q Consensus 55 ~~d~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~ 134 (848)
...+.+|+|||||++..++|+.|++.|++||+|.+|+|. +-+||+||.|.+.++|..||..|||..|.|+.
T Consensus 159 Qssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvF---------k~qGYaFVrF~tkEaAahAIv~mNntei~G~~ 229 (321)
T KOG0148|consen 159 QSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVF---------KDQGYAFVRFETKEAAAHAIVQMNNTEIGGQL 229 (321)
T ss_pred cCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEe---------cccceEEEEecchhhHHHHHHHhcCceeCceE
Confidence 466889999999999999999999999999999999999 46799999999999999999999999999999
Q ss_pred EEEEeccCCCC
Q 003091 135 LKIGWGKSVAL 145 (848)
Q Consensus 135 L~V~~ak~~~~ 145 (848)
+++.|+|....
T Consensus 230 VkCsWGKe~~~ 240 (321)
T KOG0148|consen 230 VRCSWGKEGDD 240 (321)
T ss_pred EEEeccccCCC
Confidence 99999997754
No 17
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.31 E-value=6.9e-12 Score=128.01 Aligned_cols=85 Identities=22% Similarity=0.391 Sum_probs=77.1
Q ss_pred CCCCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEE
Q 003091 56 GDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYEL 135 (848)
Q Consensus 56 ~d~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L 135 (848)
.|...|+||||+|++.+..+.|+..|.+||.|.+..|+ +|+.+|+++|||||+|.+.++|.+||...| -+|+|++-
T Consensus 8 ~DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvi---td~~t~rskGyGfVTf~d~~aa~rAc~dp~-piIdGR~a 83 (247)
T KOG0149|consen 8 GDTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVI---TDKNTGRSKGYGFVTFRDAEAATRACKDPN-PIIDGRKA 83 (247)
T ss_pred CCceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEE---eccCCccccceeeEEeecHHHHHHHhcCCC-Cccccccc
Confidence 45678899999999999999999999999999999999 699999999999999999999999997665 67999999
Q ss_pred EEEeccCCC
Q 003091 136 KIGWGKSVA 144 (848)
Q Consensus 136 ~V~~ak~~~ 144 (848)
.|.+|.-..
T Consensus 84 NcnlA~lg~ 92 (247)
T KOG0149|consen 84 NCNLASLGG 92 (247)
T ss_pred ccchhhhcC
Confidence 998876533
No 18
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.28 E-value=6.4e-12 Score=122.86 Aligned_cols=80 Identities=24% Similarity=0.418 Sum_probs=73.0
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEE
Q 003091 58 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 137 (848)
Q Consensus 58 ~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V 137 (848)
.-.|.||||||+..+++.+|+.+|..||+|.+|-|-. ...|||||+|+++.+|+.|+..|+|..|+|..|+|
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvAr--------nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rV 79 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVAR--------NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRV 79 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEee--------cCCCceEEeccCcccHHHHHhhcCCccccCceEEE
Confidence 3478999999999999999999999999999998773 56799999999999999999999999999999999
Q ss_pred EeccCCCC
Q 003091 138 GWGKSVAL 145 (848)
Q Consensus 138 ~~ak~~~~ 145 (848)
.++.-.+-
T Consensus 80 E~S~G~~r 87 (195)
T KOG0107|consen 80 ELSTGRPR 87 (195)
T ss_pred EeecCCcc
Confidence 99876543
No 19
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.27 E-value=2.5e-11 Score=142.50 Aligned_cols=82 Identities=20% Similarity=0.323 Sum_probs=77.2
Q ss_pred CccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEEE
Q 003091 59 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 138 (848)
Q Consensus 59 ~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V~ 138 (848)
..++|||+||++++++++|+++|+.||.|.+|+|++ +..+++++|||||.|.+.++|..|+..|||+.|+|+.|+|+
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~---D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~ 279 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLAR---APTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVG 279 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEe---cCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 457999999999999999999999999999999994 77788999999999999999999999999999999999999
Q ss_pred eccCC
Q 003091 139 WGKSV 143 (848)
Q Consensus 139 ~ak~~ 143 (848)
|+...
T Consensus 280 kAi~p 284 (612)
T TIGR01645 280 KCVTP 284 (612)
T ss_pred ecCCC
Confidence 98854
No 20
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.27 E-value=4.1e-12 Score=130.76 Aligned_cols=111 Identities=24% Similarity=0.381 Sum_probs=95.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEE
Q 003091 31 APSSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFV 110 (848)
Q Consensus 31 ~~~~~~~~~~~~~~~~g~~~gs~~~~d~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV 110 (848)
+++..+.++...++....+-..+....|.+|||||-.||.+..+.+|..+|-.||.|.+.|+. .|..|..+++||||
T Consensus 256 aypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVF---vDRATNQSKCFGFV 332 (371)
T KOG0146|consen 256 AYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVF---VDRATNQSKCFGFV 332 (371)
T ss_pred hcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeee---ehhccccccceeeE
Confidence 455666666666655444445556678999999999999999999999999999999999998 58899999999999
Q ss_pred EeCCHHHHHHHHHHcCCceecCeEEEEEeccCCC
Q 003091 111 AFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVA 144 (848)
Q Consensus 111 ~F~~~~~A~~Ai~~lnG~~i~G~~L~V~~ak~~~ 144 (848)
.|.+..+|.+||.+|||+.|+-++|+|..-+++.
T Consensus 333 SfDNp~SaQaAIqAMNGFQIGMKRLKVQLKRPkd 366 (371)
T KOG0146|consen 333 SFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKD 366 (371)
T ss_pred ecCCchhHHHHHHHhcchhhhhhhhhhhhcCccc
Confidence 9999999999999999999999999998866553
No 21
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.26 E-value=2.4e-11 Score=128.02 Aligned_cols=80 Identities=20% Similarity=0.289 Sum_probs=71.6
Q ss_pred ccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEe
Q 003091 60 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 139 (848)
Q Consensus 60 ~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V~~ 139 (848)
.++|||||||+.+++++|+++|+.||.|.+|.|+. +. ..+|||||+|.+.++|+.|+ .|||..|.|+.|.|.+
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~---d~---~~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~Vt~ 76 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQS---EN---ERSQIAYVTFKDPQGAETAL-LLSGATIVDQSVTITP 76 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEee---cC---CCCCEEEEEeCcHHHHHHHH-HhcCCeeCCceEEEEe
Confidence 57999999999999999999999999999999984 33 25689999999999999999 4999999999999999
Q ss_pred ccCCCCC
Q 003091 140 GKSVALP 146 (848)
Q Consensus 140 ak~~~~p 146 (848)
+.....|
T Consensus 77 a~~~~~p 83 (260)
T PLN03120 77 AEDYQLP 83 (260)
T ss_pred ccCCCCC
Confidence 8765443
No 22
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=4.6e-12 Score=127.24 Aligned_cols=85 Identities=31% Similarity=0.516 Sum_probs=81.0
Q ss_pred CccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEEE
Q 003091 59 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 138 (848)
Q Consensus 59 ~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V~ 138 (848)
...+||||+|...|+|..|...|-+||.|+.|+|. .|-++++++|||||+|...++|.+||..||+.+|.|+.|+|.
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiP---lDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN 85 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIP---LDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVN 85 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccc---cchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEe
Confidence 45689999999999999999999999999999998 588999999999999999999999999999999999999999
Q ss_pred eccCCCCC
Q 003091 139 WGKSVALP 146 (848)
Q Consensus 139 ~ak~~~~p 146 (848)
||+|..+.
T Consensus 86 ~AkP~kik 93 (298)
T KOG0111|consen 86 LAKPEKIK 93 (298)
T ss_pred ecCCcccc
Confidence 99998874
No 23
>PF04818 CTD_bind: RNA polymerase II-binding domain.; InterPro: IPR006903 This entry represents a conserved region found in a number of uncharacterised eukaryotic proteins.; PDB: 2L0I_A 2KM4_A 3D9I_B 3D9N_B 3D9O_A 3D9P_B 3D9K_A 3D9M_A 3D9J_A 3D9L_A ....
Probab=99.25 E-value=1.2e-12 Score=110.66 Aligned_cols=64 Identities=30% Similarity=0.592 Sum_probs=54.8
Q ss_pred chheeeeehhhhccCCCCCCCccchHHHHHHhhHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHhhccCccCc
Q 003091 375 KVARLMLVSDVLHNSSAPVKNASAYRTKFEATLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWSDWFLFS 448 (848)
Q Consensus 375 KL~~LYLinDIL~ns~~~~~~a~~yr~~fe~~Lp~if~~l~~~~~~~~~r~~ae~~k~kV~~vL~iWe~~~vf~ 448 (848)
||++|||+|||||||. .++.+.|...|+++||.+|.++. .. ..++.+++|.+||++|+++.||+
T Consensus 1 KL~~lYl~ndI~q~sk--~k~~~~f~~~F~~~l~~~~~~~~---~~-----~~~~~~~kv~rll~iW~~r~if~ 64 (64)
T PF04818_consen 1 KLALLYLANDILQNSK--RKNPDEFAPAFSPVLPDAFAHAY---KN-----VDPEVRKKVQRLLNIWEERNIFS 64 (64)
T ss_dssp HHHHHHHHHHHHHHHH--HHTTHCHHHHHHCCHHHHHHHHC---CC-----S-HHHHHHHHHHHHHHHHCTSS-
T ss_pred CcceeehHHHHHHHhh--hcChHHHHHHHHHHHHHHHHHHH---hc-----CCHHHHHHHHHHHHHhhCCCCCC
Confidence 7999999999999996 66888999999999999997643 21 25789999999999999999996
No 24
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.25 E-value=3.4e-11 Score=127.58 Aligned_cols=84 Identities=26% Similarity=0.437 Sum_probs=75.1
Q ss_pred cEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEec
Q 003091 61 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWG 140 (848)
Q Consensus 61 t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V~~a 140 (848)
..|||.|+|+...+.||+.+|++||+|.+|.|++ .++ -+||||||+|++.++|++|-.+|+|.+|.|++|.|..|
T Consensus 97 kRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIf----NER-GSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~A 171 (376)
T KOG0125|consen 97 KRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIF----NER-GSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNA 171 (376)
T ss_pred ceeEeecCCccccCccHHHHHHhhCceeeEEEEe----ccC-CCCccceEEecChhhHHHHHHHhhcceeeceEEEEecc
Confidence 4799999999999999999999999999999995 223 37899999999999999999999999999999999999
Q ss_pred cCCCCCCCC
Q 003091 141 KSVALPSQA 149 (848)
Q Consensus 141 k~~~~p~~~ 149 (848)
.+.......
T Consensus 172 TarV~n~K~ 180 (376)
T KOG0125|consen 172 TARVHNKKK 180 (376)
T ss_pred chhhccCCc
Confidence 876544333
No 25
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.22 E-value=1.4e-11 Score=122.94 Aligned_cols=83 Identities=29% Similarity=0.428 Sum_probs=78.6
Q ss_pred ccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEe
Q 003091 60 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 139 (848)
Q Consensus 60 ~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V~~ 139 (848)
.++|-|-||.+-++.++|..+|.+||.|.+|.|.| |..|+.++|||||-|....+|+.|+++|+|.+|+|+.|.|.+
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPr---dr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ 89 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPR---DRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQM 89 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceeccc---ccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehh
Confidence 56899999999999999999999999999999997 778999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 003091 140 GKSVAL 145 (848)
Q Consensus 140 ak~~~~ 145 (848)
|+....
T Consensus 90 arygr~ 95 (256)
T KOG4207|consen 90 ARYGRP 95 (256)
T ss_pred hhcCCC
Confidence 987654
No 26
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.22 E-value=2.6e-11 Score=142.27 Aligned_cols=79 Identities=27% Similarity=0.545 Sum_probs=74.8
Q ss_pred CccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEEE
Q 003091 59 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 138 (848)
Q Consensus 59 ~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V~ 138 (848)
..++||||||++.+++++|+++|.+||.|.+|+|++ |..+|+++|||||+|.+.++|.+|+..|||..|+|+.|+|.
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~---D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~ 182 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSW---DPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVG 182 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEee---cCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeec
Confidence 457999999999999999999999999999999995 77899999999999999999999999999999999999998
Q ss_pred ec
Q 003091 139 WG 140 (848)
Q Consensus 139 ~a 140 (848)
+.
T Consensus 183 rp 184 (612)
T TIGR01645 183 RP 184 (612)
T ss_pred cc
Confidence 53
No 27
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.21 E-value=3.3e-10 Score=131.08 Aligned_cols=132 Identities=16% Similarity=0.269 Sum_probs=110.2
Q ss_pred HHHHHHHHHHhcc-----cCHHHHHHHHHHHHhccccHHHHHHHHHHHhcccCCCcccchheeeeehhhhccCCCCC-CC
Q 003091 322 QRDEFEDMLRALT-----LERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPV-KN 395 (848)
Q Consensus 322 ~~~~l~~lL~~Lt-----~tr~sI~~~~~w~l~h~~~a~eiv~~l~~~l~~~~~~~~~KL~~LYLinDIL~ns~~~~-~~ 395 (848)
....|...|.+|. .++..|......+|+|.....+||..+.+++.. ++...||..||+|.-|+-.+.... ++
T Consensus 3 ~v~~Fn~eL~SL~DsK~~IS~sKi~~ITkaAikaIk~ykhVVqsVeKfi~k--Ckpe~Kl~gLYVIDSIVRqsrhq~~~~ 80 (894)
T KOG0132|consen 3 AVKEFNGELDSLEDSKPGISGSKILKITKAAIKAIKLYKHVVQSVEKFIKK--CKPEYKLPGLYVIDSIVRQSRHQFGKE 80 (894)
T ss_pred HHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCcccccCeeEEehHHHHHHHHhhccc
Confidence 4678899999983 578899999999999999999999999999854 457899999999999999887654 36
Q ss_pred ccchHHHHHHhhHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHhhccCccCcHHHHHHHHHHhccCCC
Q 003091 396 ASAYRTKFEATLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWSDWFLFSDAYVNGLRATFLRSGN 464 (848)
Q Consensus 396 a~~yr~~fe~~Lp~if~~l~~~~~~~~~r~~ae~~k~kV~~vL~iWe~~~vf~~~~i~~L~~~f~~~~~ 464 (848)
-..|-.-|.+.+-..|..|..|. .+.+.++.+||++|..++||-.+.|..|.++..+..+
T Consensus 81 kd~F~prf~~n~~~tf~~L~~c~---------~edks~iIrvlNlwqkn~VfK~e~IqpLlDm~~~s~~ 140 (894)
T KOG0132|consen 81 KDVFGPRFSKNFTGTFQNLYECP---------QEDKSDIIRVLNLWQKNNVFKSEIIQPLLDMADGSGL 140 (894)
T ss_pred ccccCCccchhHHHHHHHHHhcC---------HHHHHHHHHhhhhhhcccchhHHHHHHHHHHHhccCc
Confidence 67777778777777665554332 3789999999999999999999999999999987665
No 28
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.20 E-value=1.1e-10 Score=138.70 Aligned_cols=82 Identities=33% Similarity=0.477 Sum_probs=76.9
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEE
Q 003091 58 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 137 (848)
Q Consensus 58 ~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V 137 (848)
..+++|||+||+..+++++|+++|++||.|.+|+|+. + .+|+++|||||+|.+.++|.+|+..|||..++|++|+|
T Consensus 283 ~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~---d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V 358 (562)
T TIGR01628 283 AQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVML---D-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYV 358 (562)
T ss_pred cCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEE---C-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEE
Confidence 4567999999999999999999999999999999994 4 67899999999999999999999999999999999999
Q ss_pred EeccCC
Q 003091 138 GWGKSV 143 (848)
Q Consensus 138 ~~ak~~ 143 (848)
.||...
T Consensus 359 ~~a~~k 364 (562)
T TIGR01628 359 ALAQRK 364 (562)
T ss_pred EeccCc
Confidence 999864
No 29
>PLN03213 repressor of silencing 3; Provisional
Probab=99.20 E-value=4.4e-11 Score=131.66 Aligned_cols=79 Identities=20% Similarity=0.289 Sum_probs=72.0
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCH--HHHHHHHHHcCCceecCeEE
Q 003091 58 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNR--ADGQAAKDEMQGVVVYEYEL 135 (848)
Q Consensus 58 ~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~--~~A~~Ai~~lnG~~i~G~~L 135 (848)
..+.+||||||++.|++++|..+|+.||.|.+|.|++ ++| +|||||+|... .++.+||..|||..|.|+.|
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR-----ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~L 80 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR-----TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRL 80 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec-----ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCcee
Confidence 3467999999999999999999999999999999983 345 89999999987 68999999999999999999
Q ss_pred EEEeccCC
Q 003091 136 KIGWGKSV 143 (848)
Q Consensus 136 ~V~~ak~~ 143 (848)
+|.-|++.
T Consensus 81 KVNKAKP~ 88 (759)
T PLN03213 81 RLEKAKEH 88 (759)
T ss_pred EEeeccHH
Confidence 99998864
No 30
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.19 E-value=4.4e-12 Score=124.39 Aligned_cols=87 Identities=15% Similarity=0.420 Sum_probs=80.5
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEE
Q 003091 57 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 136 (848)
Q Consensus 57 d~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~ 136 (848)
-..+.-|||||||+..||.+|.-+|++||.|+.|.+++ |..||+++||||++|++..+..-|+..|||..|.|+.|+
T Consensus 32 YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiR---Dk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtir 108 (219)
T KOG0126|consen 32 YKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIR---DKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIR 108 (219)
T ss_pred cccceEEEECCCcccccCCcEEEEeeccCceEEEEEEe---cCCCCcccceEEEEecCccceEEEEeccCCceecceeEE
Confidence 34577899999999999999999999999999999995 999999999999999999999999999999999999999
Q ss_pred EEeccCCCCC
Q 003091 137 IGWGKSVALP 146 (848)
Q Consensus 137 V~~ak~~~~p 146 (848)
|........|
T Consensus 109 VDHv~~Yk~p 118 (219)
T KOG0126|consen 109 VDHVSNYKKP 118 (219)
T ss_pred eeecccccCC
Confidence 9987666554
No 31
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.18 E-value=6.8e-11 Score=136.90 Aligned_cols=83 Identities=29% Similarity=0.547 Sum_probs=77.4
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEE
Q 003091 58 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 137 (848)
Q Consensus 58 ~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V 137 (848)
+..++|||+|||..+++++|.++|++||.|..|.|+ .+..+|+++|||||+|.+.++|..|+..|||..|.|+.|+|
T Consensus 184 p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~---~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v 260 (457)
T TIGR01622 184 PNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLH---RDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKV 260 (457)
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEE---EcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEE
Confidence 347899999999999999999999999999999999 47778899999999999999999999999999999999999
Q ss_pred EeccCC
Q 003091 138 GWGKSV 143 (848)
Q Consensus 138 ~~ak~~ 143 (848)
.||...
T Consensus 261 ~~a~~~ 266 (457)
T TIGR01622 261 GYAQDS 266 (457)
T ss_pred EEccCC
Confidence 998843
No 32
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.18 E-value=1e-10 Score=99.62 Aligned_cols=70 Identities=29% Similarity=0.569 Sum_probs=63.1
Q ss_pred EEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEE
Q 003091 63 LYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 136 (848)
Q Consensus 63 LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~ 136 (848)
|||+|||+++++++|..+|+.||.|..|++.. +.. +..+++|||+|.+.++|.+|+..++|..|+|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~---~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIK---NKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEE---STT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEe---eec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999983 444 78899999999999999999999999999999875
No 33
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.17 E-value=2.3e-10 Score=134.20 Aligned_cols=84 Identities=14% Similarity=0.262 Sum_probs=77.9
Q ss_pred CccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEEE
Q 003091 59 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 138 (848)
Q Consensus 59 ~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V~ 138 (848)
..++|||||||..+++++|.++|..||.|..|.|+ .+..+|.++|||||+|.+.++|..||..|||..|+|+.|.|.
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~---~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~ 370 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLI---KDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQ 370 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEE---ecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 45799999999999999999999999999999998 477789999999999999999999999999999999999999
Q ss_pred eccCCCC
Q 003091 139 WGKSVAL 145 (848)
Q Consensus 139 ~ak~~~~ 145 (848)
||.....
T Consensus 371 ~a~~~~~ 377 (509)
T TIGR01642 371 RACVGAN 377 (509)
T ss_pred ECccCCC
Confidence 9876543
No 34
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.15 E-value=9.8e-11 Score=139.26 Aligned_cols=79 Identities=34% Similarity=0.579 Sum_probs=74.7
Q ss_pred cEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEec
Q 003091 61 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWG 140 (848)
Q Consensus 61 t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V~~a 140 (848)
++|||||||+++||++|.++|++||.|.+|+|+. |..+++++|||||+|.+.++|.+|+..||+..|.|+.|+|.|+
T Consensus 1 ~sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~---d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s 77 (562)
T TIGR01628 1 ASLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCR---DSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWS 77 (562)
T ss_pred CeEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEe---cCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecc
Confidence 4799999999999999999999999999999994 7788999999999999999999999999999999999999997
Q ss_pred cC
Q 003091 141 KS 142 (848)
Q Consensus 141 k~ 142 (848)
..
T Consensus 78 ~~ 79 (562)
T TIGR01628 78 QR 79 (562)
T ss_pred cc
Confidence 53
No 35
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.15 E-value=9.6e-11 Score=120.40 Aligned_cols=86 Identities=23% Similarity=0.434 Sum_probs=80.7
Q ss_pred CCCCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEE
Q 003091 56 GDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYEL 135 (848)
Q Consensus 56 ~d~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L 135 (848)
.+...|||.|.-||.++|+++|+.+|+..|.|.+||+++ |+.+|++-|||||.|.++.+|++|++.|||..+..+.|
T Consensus 37 t~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvR---DKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTI 113 (360)
T KOG0145|consen 37 TDESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVR---DKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTI 113 (360)
T ss_pred cCcccceeeeeecccccCHHHHHHHhhcccceeeeeeee---ccccccccccceeeecChHHHHHHHhhhcceeeccceE
Confidence 345678999999999999999999999999999999995 88999999999999999999999999999999999999
Q ss_pred EEEeccCCC
Q 003091 136 KIGWGKSVA 144 (848)
Q Consensus 136 ~V~~ak~~~ 144 (848)
+|+||++..
T Consensus 114 KVSyARPSs 122 (360)
T KOG0145|consen 114 KVSYARPSS 122 (360)
T ss_pred EEEeccCCh
Confidence 999998653
No 36
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.14 E-value=3.3e-10 Score=132.25 Aligned_cols=82 Identities=21% Similarity=0.345 Sum_probs=74.7
Q ss_pred CCCCccEEEEecCCC-CCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeE
Q 003091 56 GDPQTTNLYVGNLSP-QVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYE 134 (848)
Q Consensus 56 ~d~~~t~LfVgNLp~-~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~ 134 (848)
..+.+++|||+||++ .+|+++|..+|+.||.|.+|+|+. + .+|||||+|.+.++|..|+..|||..|.|+.
T Consensus 271 ~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~---~-----~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~ 342 (481)
T TIGR01649 271 GGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMK---N-----KKETALIEMADPYQAQLALTHLNGVKLFGKP 342 (481)
T ss_pred CCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEe---C-----CCCEEEEEECCHHHHHHHHHHhCCCEECCce
Confidence 356788999999998 699999999999999999999994 2 3699999999999999999999999999999
Q ss_pred EEEEeccCCCC
Q 003091 135 LKIGWGKSVAL 145 (848)
Q Consensus 135 L~V~~ak~~~~ 145 (848)
|+|.|++...+
T Consensus 343 l~v~~s~~~~~ 353 (481)
T TIGR01649 343 LRVCPSKQQNV 353 (481)
T ss_pred EEEEEcccccc
Confidence 99999987654
No 37
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=6.3e-11 Score=122.75 Aligned_cols=81 Identities=26% Similarity=0.582 Sum_probs=77.5
Q ss_pred cEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEec
Q 003091 61 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWG 140 (848)
Q Consensus 61 t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V~~a 140 (848)
-.+|||-|.+.++-+.|++.|.+||.|.+++|++ |..|++++|||||.|-+.++|++||..|||.-|+++.|+-.||
T Consensus 63 fhvfvgdls~eI~~e~lr~aF~pFGevS~akvir---D~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWA 139 (321)
T KOG0148|consen 63 FHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIR---DMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWA 139 (321)
T ss_pred eeEEehhcchhcchHHHHHHhccccccccceEee---cccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccc
Confidence 3699999999999999999999999999999995 8999999999999999999999999999999999999999999
Q ss_pred cCCC
Q 003091 141 KSVA 144 (848)
Q Consensus 141 k~~~ 144 (848)
..++
T Consensus 140 TRKp 143 (321)
T KOG0148|consen 140 TRKP 143 (321)
T ss_pred ccCc
Confidence 8664
No 38
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.14 E-value=1.6e-10 Score=121.38 Aligned_cols=83 Identities=18% Similarity=0.412 Sum_probs=78.4
Q ss_pred CccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEEE
Q 003091 59 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 138 (848)
Q Consensus 59 ~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V~ 138 (848)
+.+||||+-|+..++|..|+..|.+||+|+.|.|+ .+..||+++|||||+|+...+...|....+|.+|+|+.|.|.
T Consensus 100 Py~TLFv~RLnydT~EskLrreF~~YG~IkrirlV---~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VD 176 (335)
T KOG0113|consen 100 PYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLV---RDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVD 176 (335)
T ss_pred ccceeeeeeccccccHHHHHHHHHhcCcceeEEEe---eecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEE
Confidence 48899999999999999999999999999999999 589999999999999999999999999999999999999999
Q ss_pred eccCCC
Q 003091 139 WGKSVA 144 (848)
Q Consensus 139 ~ak~~~ 144 (848)
+-....
T Consensus 177 vERgRT 182 (335)
T KOG0113|consen 177 VERGRT 182 (335)
T ss_pred eccccc
Confidence 866544
No 39
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.14 E-value=1.3e-10 Score=136.32 Aligned_cols=79 Identities=19% Similarity=0.362 Sum_probs=72.0
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceec-CeEEE
Q 003091 58 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVY-EYELK 136 (848)
Q Consensus 58 ~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~-G~~L~ 136 (848)
...|+|||+|||.+++|++|..+|++||.|.+|+|+. | .+|+++|||||+|.+.++|++||..|||..|. |+.|.
T Consensus 56 ~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~---D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~ 131 (578)
T TIGR01648 56 GRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMM---D-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLG 131 (578)
T ss_pred CCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEE---C-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccc
Confidence 3468999999999999999999999999999999994 6 68999999999999999999999999999984 78777
Q ss_pred EEec
Q 003091 137 IGWG 140 (848)
Q Consensus 137 V~~a 140 (848)
|.++
T Consensus 132 V~~S 135 (578)
T TIGR01648 132 VCIS 135 (578)
T ss_pred cccc
Confidence 7654
No 40
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.11 E-value=4.2e-10 Score=115.77 Aligned_cols=84 Identities=25% Similarity=0.440 Sum_probs=78.1
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEE
Q 003091 57 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 136 (848)
Q Consensus 57 d~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~ 136 (848)
+..+..|||-||.++.+|..|+++|++||.|..|||++ |..|.+.+|||||++.+.++|..||..|||..++++.|.
T Consensus 275 ~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvir---D~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQ 351 (360)
T KOG0145|consen 275 PGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIR---DFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQ 351 (360)
T ss_pred CCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEe---cCCcccccceeEEEecchHHHHHHHHHhcCccccceEEE
Confidence 34577999999999999999999999999999999995 888899999999999999999999999999999999999
Q ss_pred EEeccCC
Q 003091 137 IGWGKSV 143 (848)
Q Consensus 137 V~~ak~~ 143 (848)
|.|-..+
T Consensus 352 VsFKtnk 358 (360)
T KOG0145|consen 352 VSFKTNK 358 (360)
T ss_pred EEEecCC
Confidence 9996543
No 41
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.07 E-value=5.1e-10 Score=100.76 Aligned_cols=76 Identities=24% Similarity=0.379 Sum_probs=69.9
Q ss_pred CccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEEE
Q 003091 59 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 138 (848)
Q Consensus 59 ~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V~ 138 (848)
.+.-|||.|||+.+|.++..++|++||+|..|+|-. +...+|.|||.|++..+|.+|+..|+|..+.++.|.|.
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~------~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vl 90 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGN------TKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVL 90 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecC------ccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEE
Confidence 366899999999999999999999999999999984 34567999999999999999999999999999999998
Q ss_pred ec
Q 003091 139 WG 140 (848)
Q Consensus 139 ~a 140 (848)
|=
T Consensus 91 yy 92 (124)
T KOG0114|consen 91 YY 92 (124)
T ss_pred ec
Confidence 73
No 42
>smart00362 RRM_2 RNA recognition motif.
Probab=99.07 E-value=6.9e-10 Score=92.61 Aligned_cols=71 Identities=35% Similarity=0.607 Sum_probs=65.5
Q ss_pred EEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEE
Q 003091 62 NLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 137 (848)
Q Consensus 62 ~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V 137 (848)
+|||+|||..++.++|..+|.+||.|..+.++. +. +.++++|||+|.+..+|..|+..++|..+.|+.|.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~---~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPK---DT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEec---CC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 589999999999999999999999999999884 22 567899999999999999999999999999999887
No 43
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.07 E-value=8.8e-10 Score=108.56 Aligned_cols=80 Identities=20% Similarity=0.317 Sum_probs=71.9
Q ss_pred CccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEEE
Q 003091 59 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 138 (848)
Q Consensus 59 ~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V~ 138 (848)
..++|||||||.++.+.+|+.+|.+||.|..|.+..++ ...+||||+|++..+|+.||..-+|..++|+.|+|.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~------g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVE 78 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP------GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVE 78 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC------CCCCeeEEEecCccchhhhhhcccccccCcceEEEE
Confidence 56899999999999999999999999999999876322 346899999999999999999999999999999999
Q ss_pred eccCCC
Q 003091 139 WGKSVA 144 (848)
Q Consensus 139 ~ak~~~ 144 (848)
|+....
T Consensus 79 fprggr 84 (241)
T KOG0105|consen 79 FPRGGR 84 (241)
T ss_pred eccCCC
Confidence 977543
No 44
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.06 E-value=4.8e-10 Score=123.11 Aligned_cols=83 Identities=22% Similarity=0.358 Sum_probs=77.2
Q ss_pred CCCCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCcee-cCeE
Q 003091 56 GDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVV-YEYE 134 (848)
Q Consensus 56 ~d~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i-~G~~ 134 (848)
..+.+|-||||.||.++.|++|..+|.+.|.|..++|| +|+.+|.++|||||+|.+.+.|+.||..||+.+| .|+.
T Consensus 79 ~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLM---mD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~ 155 (506)
T KOG0117|consen 79 PPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLM---MDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKL 155 (506)
T ss_pred CCCCCceEEecCCCccccchhhHHHHHhccceeeEEEe---ecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCE
Confidence 34678999999999999999999999999999999999 6889999999999999999999999999999998 6899
Q ss_pred EEEEecc
Q 003091 135 LKIGWGK 141 (848)
Q Consensus 135 L~V~~ak 141 (848)
|.|..+-
T Consensus 156 igvc~Sv 162 (506)
T KOG0117|consen 156 LGVCVSV 162 (506)
T ss_pred eEEEEee
Confidence 9987643
No 45
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.06 E-value=8.1e-10 Score=114.82 Aligned_cols=77 Identities=22% Similarity=0.269 Sum_probs=68.5
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEE
Q 003091 58 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 137 (848)
Q Consensus 58 ~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V 137 (848)
+.+.+|||+||++.+|+++|+++|+.||.|.+|.|+. + +..++||||+|.++.+|+.|+ .|+|..|.+++|.|
T Consensus 3 ~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~---D---~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~I 75 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIR---S---GEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCI 75 (243)
T ss_pred CCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEec---C---CCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEE
Confidence 3567999999999999999999999999999999994 3 345589999999999999998 79999999999998
Q ss_pred Eecc
Q 003091 138 GWGK 141 (848)
Q Consensus 138 ~~ak 141 (848)
.-.-
T Consensus 76 t~~~ 79 (243)
T PLN03121 76 TRWG 79 (243)
T ss_pred EeCc
Confidence 6543
No 46
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.05 E-value=5.7e-10 Score=104.80 Aligned_cols=85 Identities=14% Similarity=0.296 Sum_probs=79.8
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEE
Q 003091 57 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 136 (848)
Q Consensus 57 d~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~ 136 (848)
.-.+..|||.++....+|+++...|+.||.|+.|.+- .|..||..+|||.|+|.+...|++|+.+|||..|.|..|.
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLN---LDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~ 145 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLN---LDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVS 145 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhhcccccceeec---cccccccccceeeeehHhHHHHHHHHHhccchhhhCCcee
Confidence 3457899999999999999999999999999999998 5888999999999999999999999999999999999999
Q ss_pred EEeccCCC
Q 003091 137 IGWGKSVA 144 (848)
Q Consensus 137 V~~ak~~~ 144 (848)
|.|+...+
T Consensus 146 VDw~Fv~g 153 (170)
T KOG0130|consen 146 VDWCFVKG 153 (170)
T ss_pred EEEEEecC
Confidence 99998664
No 47
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.05 E-value=6e-10 Score=116.76 Aligned_cols=80 Identities=28% Similarity=0.505 Sum_probs=76.1
Q ss_pred ccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEe
Q 003091 60 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 139 (848)
Q Consensus 60 ~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V~~ 139 (848)
.++|||||||..+++++|..+|.+||.|..|.|.. +..++..+|||||.|.+.++|..|+..|+|..|.|+.|.|.+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~---d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~ 191 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVR---DRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQK 191 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeee---ccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeec
Confidence 58999999999999999999999999999999984 667899999999999999999999999999999999999999
Q ss_pred ccC
Q 003091 140 GKS 142 (848)
Q Consensus 140 ak~ 142 (848)
+..
T Consensus 192 ~~~ 194 (306)
T COG0724 192 AQP 194 (306)
T ss_pred ccc
Confidence 764
No 48
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.03 E-value=2e-10 Score=122.56 Aligned_cols=75 Identities=28% Similarity=0.599 Sum_probs=73.4
Q ss_pred cEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEEE
Q 003091 61 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 138 (848)
Q Consensus 61 t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V~ 138 (848)
|.||||.+.+.+.|+.|+..|..||+|++|.+-| |+.|++++|||||+|+-++.|.-|++.|||..++|+.|+|+
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSW---Dp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVg 188 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSW---DPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVG 188 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeeccc---ccccccccceEEEEEeCcHHHHHHHHHhccccccCcccccc
Confidence 7899999999999999999999999999999999 88999999999999999999999999999999999999997
No 49
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.03 E-value=8.3e-10 Score=127.88 Aligned_cols=81 Identities=16% Similarity=0.315 Sum_probs=74.8
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEE
Q 003091 58 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 137 (848)
Q Consensus 58 ~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V 137 (848)
....+|||+|||..+++++|.++|++||.|..|+|+ .+..+++++|||||+|.+.++|.+||. |+|..|.|++|.|
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~---~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v 162 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCI---KDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIV 162 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe---ecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEE
Confidence 446799999999999999999999999999999999 477889999999999999999999995 9999999999999
Q ss_pred EeccC
Q 003091 138 GWGKS 142 (848)
Q Consensus 138 ~~ak~ 142 (848)
.++..
T Consensus 163 ~~~~~ 167 (457)
T TIGR01622 163 QSSQA 167 (457)
T ss_pred eecch
Confidence 87654
No 50
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.02 E-value=3.1e-10 Score=111.79 Aligned_cols=79 Identities=25% Similarity=0.481 Sum_probs=74.5
Q ss_pred ccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEe
Q 003091 60 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 139 (848)
Q Consensus 60 ~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V~~ 139 (848)
..+||||||+..++++.|.++|-+.|+|..++|. .|..+...+|||||+|.+.++|+-||+.||...|.|++|+|.-
T Consensus 9 d~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iP---kDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~k 85 (203)
T KOG0131|consen 9 DATLYVGNLDEKVSEELLYELFIQAGPVVNLHIP---KDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNK 85 (203)
T ss_pred CceEEEecCCHHHHHHHHHHHHHhcCceeeeecc---hhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEe
Confidence 5699999999999999999999999999999998 4888889999999999999999999999999999999999987
Q ss_pred cc
Q 003091 140 GK 141 (848)
Q Consensus 140 ak 141 (848)
+.
T Consensus 86 as 87 (203)
T KOG0131|consen 86 AS 87 (203)
T ss_pred cc
Confidence 65
No 51
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.01 E-value=1e-09 Score=128.86 Aligned_cols=76 Identities=32% Similarity=0.517 Sum_probs=70.2
Q ss_pred CccEEEEecCCCCCCHHHHHHHhccC--CCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEE
Q 003091 59 QTTNLYVGNLSPQVDENFLLRTFGRF--GPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 136 (848)
Q Consensus 59 ~~t~LfVgNLp~~vte~~L~~~F~~f--G~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~ 136 (848)
..++|||+||+.++++++|+++|++| |.|..|+++ ++||||+|.+.++|++|+..|||..|+|+.|+
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~-----------rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~ 300 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI-----------RDYAFVHFEDREDAVKAMDELNGKELEGSEIE 300 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee-----------cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEE
Confidence 35689999999999999999999999 999999877 26999999999999999999999999999999
Q ss_pred EEeccCCCC
Q 003091 137 IGWGKSVAL 145 (848)
Q Consensus 137 V~~ak~~~~ 145 (848)
|.||++...
T Consensus 301 V~~Akp~~~ 309 (578)
T TIGR01648 301 VTLAKPVDK 309 (578)
T ss_pred EEEccCCCc
Confidence 999987543
No 52
>smart00360 RRM RNA recognition motif.
Probab=98.99 E-value=1.6e-09 Score=90.03 Aligned_cols=70 Identities=31% Similarity=0.571 Sum_probs=64.5
Q ss_pred EecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEE
Q 003091 65 VGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 137 (848)
Q Consensus 65 VgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V 137 (848)
|+|||..+++++|..+|.+||.|..+.|.. +..++.++++|||.|.+.++|..|+..|+|..++|+.|+|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~---~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVR---DKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEe---CCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 689999999999999999999999999984 4446788999999999999999999999999999999887
No 53
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=98.97 E-value=1.8e-09 Score=126.03 Aligned_cols=76 Identities=18% Similarity=0.229 Sum_probs=69.7
Q ss_pred ccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHH--cCCceecCeEEEE
Q 003091 60 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDE--MQGVVVYEYELKI 137 (848)
Q Consensus 60 ~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~--lnG~~i~G~~L~V 137 (848)
+.+|||+|||+.+++++|.++|++||.|.+|+|+. .++||||+|.+.++|.+|+.. +++..|+|+.|+|
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~---------~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v 72 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP---------GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFF 72 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC---------CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEE
Confidence 56899999999999999999999999999999982 568999999999999999987 4789999999999
Q ss_pred EeccCCC
Q 003091 138 GWGKSVA 144 (848)
Q Consensus 138 ~~ak~~~ 144 (848)
.|+....
T Consensus 73 ~~s~~~~ 79 (481)
T TIGR01649 73 NYSTSQE 79 (481)
T ss_pred EecCCcc
Confidence 9997654
No 54
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.96 E-value=1.3e-09 Score=123.66 Aligned_cols=82 Identities=21% Similarity=0.483 Sum_probs=78.5
Q ss_pred cEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEec
Q 003091 61 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWG 140 (848)
Q Consensus 61 t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V~~a 140 (848)
+.+||||+|+.++++.|..+|+..|.|.++++++ |.++|+.+|||||+|.+.++|..|+..|||..+.|++|+|.|+
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~---D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~ 95 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVY---DRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYA 95 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecc---cccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecc
Confidence 7999999999999999999999999999999995 8899999999999999999999999999999999999999998
Q ss_pred cCCCC
Q 003091 141 KSVAL 145 (848)
Q Consensus 141 k~~~~ 145 (848)
.....
T Consensus 96 ~~~~~ 100 (435)
T KOG0108|consen 96 SNRKN 100 (435)
T ss_pred cccch
Confidence 87653
No 55
>PF12243 CTK3: CTD kinase subunit gamma CTK3
Probab=98.95 E-value=2.2e-09 Score=103.87 Aligned_cols=131 Identities=24% Similarity=0.363 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHhcccCHHHHHHHHHHHHhccccHHHHHHHHHHHhcccCCCcccchheeeeehhhhccCCCCCC-Cccch
Q 003091 321 SQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVK-NASAY 399 (848)
Q Consensus 321 ~~~~~l~~lL~~Lt~tr~sI~~~~~w~l~h~~~a~eiv~~l~~~l~~~~~~~~~KL~~LYLinDIL~ns~~~~~-~a~~y 399 (848)
+.|.+|..+|+.||.++.||++|..|+|.|.+.++++.+||++.|-.. +++.|+.+||+|-= |+.++.... ....|
T Consensus 5 E~r~~F~~~L~~L~aS~qSi~kaa~fAlk~~~~~edL~~cIle~le~~--~lN~R~nI~~fID~-l~e~~~~~~~~~~~Y 81 (139)
T PF12243_consen 5 EVRMQFTQLLRRLNASQQSIQKAAQFALKNRDMEEDLWSCILEQLEKE--NLNTRINIFYFIDS-LCESSQKSKKYNYPY 81 (139)
T ss_pred HHHHHHHHHHHHcchhHHHHHHHHHHHHHccccHHHHHHHHHHHHhcc--chhhHHHHHHHHHH-HHHHHHhcccccchh
Confidence 567899999999999999999999999999999999999999999655 68999999999954 666653332 35679
Q ss_pred HHHHHHhhHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHhhccCccCcHHHHHHHHHHhc
Q 003091 400 RTKFEATLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWSDWFLFSDAYVNGLRATFL 460 (848)
Q Consensus 400 r~~fe~~Lp~if~~l~~~~~~~~~r~~ae~~k~kV~~vL~iWe~~~vf~~~~i~~L~~~f~ 460 (848)
...++..||.|...+.+ .+...+ .....|.+||+.|.++.+++..++..+...+.
T Consensus 82 v~~l~~dL~~Iv~~V~P-----~~~~g~-~N~~~~~kvL~~~~~k~~l~~~~~~~~~~~l~ 136 (139)
T PF12243_consen 82 VSMLQRDLPRIVDAVAP-----PDNSGA-ANLKSVRKVLKNWSKKKILDPEEYEEIEASLK 136 (139)
T ss_pred HHHHHHHHHHHHHHhCC-----CCCccc-hHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 99999999998865442 222222 67889999999999999999999998877653
No 56
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.94 E-value=4.7e-09 Score=88.04 Aligned_cols=74 Identities=30% Similarity=0.597 Sum_probs=66.8
Q ss_pred EEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEe
Q 003091 62 NLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 139 (848)
Q Consensus 62 ~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V~~ 139 (848)
+|||+|||+.+++++|..+|..||.|..+.+.. +..+ ..+++|||.|.+.++|..|+..++|..+.|+.|.|.|
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~---~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVR---DKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEee---CCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 489999999999999999999999999999984 2222 5689999999999999999999999999999999875
No 57
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.93 E-value=1e-09 Score=108.24 Aligned_cols=84 Identities=30% Similarity=0.525 Sum_probs=77.6
Q ss_pred CccEEEEecCCCCCCHHHHHHHhccCCCeeEE-EEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEE
Q 003091 59 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASV-KIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 137 (848)
Q Consensus 59 ~~t~LfVgNLp~~vte~~L~~~F~~fG~I~sv-kI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V 137 (848)
.+.+||||||.+.++|..|..+|+.||.|.+. +||+ +..||.+++||||.|.+.+.+.+|+..|||..++.++|.|
T Consensus 95 vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~r---d~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv 171 (203)
T KOG0131|consen 95 VGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMR---DPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITV 171 (203)
T ss_pred ccccccccccCcchhHHHHHHHHHhccccccCCcccc---cccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEE
Confidence 45799999999999999999999999998764 7884 8889999999999999999999999999999999999999
Q ss_pred EeccCCCC
Q 003091 138 GWGKSVAL 145 (848)
Q Consensus 138 ~~ak~~~~ 145 (848)
.+++....
T Consensus 172 ~ya~k~~~ 179 (203)
T KOG0131|consen 172 SYAFKKDT 179 (203)
T ss_pred EEEEecCC
Confidence 99997754
No 58
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=2.4e-09 Score=114.34 Aligned_cols=85 Identities=24% Similarity=0.436 Sum_probs=79.9
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEE
Q 003091 58 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 137 (848)
Q Consensus 58 ~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V 137 (848)
|+-..|||..|+|-++.++|.-+|+.||+|.+|.|++ |..||-+-.||||+|.+.+++++|.-.|++..|+.++|.|
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIR---D~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHV 313 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIR---DRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHV 313 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEe---cccccchhheeeeeecchhhHHHHHhhhcceeeccceEEe
Confidence 4566899999999999999999999999999999995 8889999999999999999999999999999999999999
Q ss_pred EeccCCCC
Q 003091 138 GWGKSVAL 145 (848)
Q Consensus 138 ~~ak~~~~ 145 (848)
.|+.+++.
T Consensus 314 DFSQSVsk 321 (479)
T KOG0415|consen 314 DFSQSVSK 321 (479)
T ss_pred ehhhhhhh
Confidence 99988764
No 59
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.90 E-value=6.8e-09 Score=84.90 Aligned_cols=56 Identities=29% Similarity=0.552 Sum_probs=50.4
Q ss_pred HHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEec
Q 003091 77 LLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWG 140 (848)
Q Consensus 77 L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V~~a 140 (848)
|..+|++||.|..|.+.. . .+++|||+|.+.++|..|+..|||..++|+.|+|.||
T Consensus 1 L~~~f~~fG~V~~i~~~~---~-----~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFK---K-----KRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEET---T-----STTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEe---C-----CCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 678999999999999983 1 1599999999999999999999999999999999996
No 60
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.88 E-value=2.6e-09 Score=111.85 Aligned_cols=77 Identities=23% Similarity=0.441 Sum_probs=71.9
Q ss_pred cEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEec
Q 003091 61 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWG 140 (848)
Q Consensus 61 t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V~~a 140 (848)
.+|||||||.++++.+|+.+|.+||+|..|.|+ |+||||..++...|+.||..|+|..|+|..|+|.-+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv-----------KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaS 71 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIV-----------KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEAS 71 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeee-----------cccceEEeecccccHHHHhhcccceecceEEEEEec
Confidence 379999999999999999999999999999999 489999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 003091 141 KSVALPSQ 148 (848)
Q Consensus 141 k~~~~p~~ 148 (848)
|++..++.
T Consensus 72 ksKsk~st 79 (346)
T KOG0109|consen 72 KSKSKAST 79 (346)
T ss_pred cccCCCcc
Confidence 98865543
No 61
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.88 E-value=4.7e-09 Score=114.89 Aligned_cols=86 Identities=15% Similarity=0.419 Sum_probs=76.7
Q ss_pred CCCCCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCce-ecC-
Q 003091 55 DGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVV-VYE- 132 (848)
Q Consensus 55 ~~d~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~-i~G- 132 (848)
..|...-+||||.+|..++|.+|+.+|.+||.|.+|.|+ .|+.|+.++|||||.|.++++|.+|+.+|++.. |-|
T Consensus 29 ~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~---kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~ 105 (510)
T KOG0144|consen 29 NPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLI---KDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGM 105 (510)
T ss_pred CCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEee---cccccCcccceEEEEeccHHHHHHHHHHhhcccccCCC
Confidence 345667799999999999999999999999999999999 588999999999999999999999999999865 544
Q ss_pred -eEEEEEeccCC
Q 003091 133 -YELKIGWGKSV 143 (848)
Q Consensus 133 -~~L~V~~ak~~ 143 (848)
.+|.|.||..-
T Consensus 106 ~~pvqvk~Ad~E 117 (510)
T KOG0144|consen 106 HHPVQVKYADGE 117 (510)
T ss_pred Ccceeecccchh
Confidence 78888887654
No 62
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.86 E-value=6e-09 Score=111.70 Aligned_cols=81 Identities=30% Similarity=0.610 Sum_probs=71.4
Q ss_pred CCCCCCCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHH-cCCceec
Q 003091 53 FDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDE-MQGVVVY 131 (848)
Q Consensus 53 ~~~~d~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~-lnG~~i~ 131 (848)
.+-.|..-++||||+|...++|.+|..+|.+||.|.+|.++. .++||||+|.++.+|+.|... +|..+|+
T Consensus 221 epPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~---------~~~CAFv~ftTR~aAE~Aae~~~n~lvI~ 291 (377)
T KOG0153|consen 221 EPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILP---------RKGCAFVTFTTREAAEKAAEKSFNKLVIN 291 (377)
T ss_pred CCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeec---------ccccceeeehhhHHHHHHHHhhcceeeec
Confidence 344566778999999999999999999999999999999993 567999999999999988765 6666789
Q ss_pred CeEEEEEeccC
Q 003091 132 EYELKIGWGKS 142 (848)
Q Consensus 132 G~~L~V~~ak~ 142 (848)
|++|+|.||.+
T Consensus 292 G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 292 GFRLKIKWGRP 302 (377)
T ss_pred ceEEEEEeCCC
Confidence 99999999987
No 63
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.85 E-value=4.1e-09 Score=115.90 Aligned_cols=74 Identities=31% Similarity=0.432 Sum_probs=69.5
Q ss_pred cEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEec
Q 003091 61 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWG 140 (848)
Q Consensus 61 t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V~~a 140 (848)
..|||.||+.+||++.|+++|.+||.|..|+.+ +-||||.|.++++|.+|++.|||+.|+|..|.|.+|
T Consensus 260 KvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~-----------rDYaFVHf~eR~davkAm~~~ngkeldG~~iEvtLA 328 (506)
T KOG0117|consen 260 KVLYVRNLMESTTEETLKKLFNEFGKVERVKKP-----------RDYAFVHFAEREDAVKAMKETNGKELDGSPIEVTLA 328 (506)
T ss_pred eeeeeeccchhhhHHHHHHHHHhccceEEeecc-----------cceeEEeecchHHHHHHHHHhcCceecCceEEEEec
Confidence 469999999999999999999999999999877 259999999999999999999999999999999999
Q ss_pred cCCCC
Q 003091 141 KSVAL 145 (848)
Q Consensus 141 k~~~~ 145 (848)
|++..
T Consensus 329 KP~~k 333 (506)
T KOG0117|consen 329 KPVDK 333 (506)
T ss_pred CChhh
Confidence 98763
No 64
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.82 E-value=1e-08 Score=114.92 Aligned_cols=82 Identities=21% Similarity=0.347 Sum_probs=74.2
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHc-----CC-cee
Q 003091 57 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEM-----QG-VVV 130 (848)
Q Consensus 57 d~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~l-----nG-~~i 130 (848)
.....+|||.|||+++|++.|..+|++||.|..+.|+ .++.|++++|+|||.|.+..+|.+||.+. .| ..|
T Consensus 289 ~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV---~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll 365 (678)
T KOG0127|consen 289 ITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIV---KDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLL 365 (678)
T ss_pred ccccceEEEecCCccccHHHHHHHHHhhccceeEEEE---eccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEE
Confidence 3456799999999999999999999999999999999 68999999999999999999999999876 34 778
Q ss_pred cCeEEEEEecc
Q 003091 131 YEYELKIGWGK 141 (848)
Q Consensus 131 ~G~~L~V~~ak 141 (848)
+|+.|+|..|-
T Consensus 366 ~GR~Lkv~~Av 376 (678)
T KOG0127|consen 366 DGRLLKVTLAV 376 (678)
T ss_pred eccEEeeeecc
Confidence 99999997654
No 65
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.78 E-value=3.6e-08 Score=115.76 Aligned_cols=77 Identities=23% Similarity=0.408 Sum_probs=64.2
Q ss_pred CCCCccEEEEecCCCCCCHHHHHHHhccC------------CCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHH
Q 003091 56 GDPQTTNLYVGNLSPQVDENFLLRTFGRF------------GPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKD 123 (848)
Q Consensus 56 ~d~~~t~LfVgNLp~~vte~~L~~~F~~f------------G~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~ 123 (848)
......+|||||||+.+|+++|.++|..| +.|..|.+. +.+|||||+|.+.++|..||
T Consensus 171 ~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~---------~~kg~afVeF~~~e~A~~Al- 240 (509)
T TIGR01642 171 ATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNIN---------KEKNFAFLEFRTVEEATFAM- 240 (509)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEC---------CCCCEEEEEeCCHHHHhhhh-
Confidence 34556799999999999999999999875 234444443 46799999999999999999
Q ss_pred HcCCceecCeEEEEEeccC
Q 003091 124 EMQGVVVYEYELKIGWGKS 142 (848)
Q Consensus 124 ~lnG~~i~G~~L~V~~ak~ 142 (848)
.|||..|.|+.|+|...+.
T Consensus 241 ~l~g~~~~g~~l~v~r~~~ 259 (509)
T TIGR01642 241 ALDSIIYSNVFLKIRRPHD 259 (509)
T ss_pred cCCCeEeeCceeEecCccc
Confidence 6999999999999976543
No 66
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.78 E-value=7e-09 Score=117.00 Aligned_cols=78 Identities=29% Similarity=0.546 Sum_probs=73.8
Q ss_pred EEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEeccC
Q 003091 63 LYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKS 142 (848)
Q Consensus 63 LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V~~ak~ 142 (848)
||||||.+++++++|..+|..||.|..|.++ .|.+||+++|||||+|.+.++|.+|+..|||++|-|+.|+|+....
T Consensus 281 l~vgnLHfNite~~lr~ifepfg~Ie~v~l~---~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~ 357 (549)
T KOG0147|consen 281 LYVGNLHFNITEDMLRGIFEPFGKIENVQLT---KDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTE 357 (549)
T ss_pred hhhcccccCchHHHHhhhccCcccceeeeec---cccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeee
Confidence 9999999999999999999999999999998 5888999999999999999999999999999999999999987554
Q ss_pred C
Q 003091 143 V 143 (848)
Q Consensus 143 ~ 143 (848)
.
T Consensus 358 r 358 (549)
T KOG0147|consen 358 R 358 (549)
T ss_pred e
Confidence 3
No 67
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.76 E-value=1.3e-08 Score=118.17 Aligned_cols=79 Identities=28% Similarity=0.521 Sum_probs=73.5
Q ss_pred CccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEEE
Q 003091 59 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 138 (848)
Q Consensus 59 ~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V~ 138 (848)
.++|||||+|+.+|++.+|..+|..||.|.+|.++- +++||||++..+.+|++|+..|++..+.++.|+|.
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~---------~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~ 490 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP---------PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIA 490 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeecc---------CCceeEEEEeehhHHHHHHHHHhcccccceeeEEe
Confidence 368999999999999999999999999999999883 67999999999999999999999999999999999
Q ss_pred eccCCCCC
Q 003091 139 WGKSVALP 146 (848)
Q Consensus 139 ~ak~~~~p 146 (848)
||-...+-
T Consensus 491 Wa~g~G~k 498 (894)
T KOG0132|consen 491 WAVGKGPK 498 (894)
T ss_pred eeccCCcc
Confidence 99876643
No 68
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.75 E-value=1.9e-08 Score=112.83 Aligned_cols=83 Identities=18% Similarity=0.298 Sum_probs=74.7
Q ss_pred CccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEEE
Q 003091 59 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 138 (848)
Q Consensus 59 ~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V~ 138 (848)
.-+.|.|.|||+.+...+|..+|+.||.|..|.|.. ...|+-+|||||.|....+|..|++.|||..|+|++|-|.
T Consensus 116 ~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~----k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVD 191 (678)
T KOG0127|consen 116 PKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPR----KKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVD 191 (678)
T ss_pred ccceEEeecCCcccCcHHHHHHHhhcceEEEEEccc----CCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEe
Confidence 367899999999999999999999999999999973 2235566999999999999999999999999999999999
Q ss_pred eccCCCC
Q 003091 139 WGKSVAL 145 (848)
Q Consensus 139 ~ak~~~~ 145 (848)
||-+..+
T Consensus 192 WAV~Kd~ 198 (678)
T KOG0127|consen 192 WAVDKDT 198 (678)
T ss_pred eeccccc
Confidence 9987654
No 69
>smart00361 RRM_1 RNA recognition motif.
Probab=98.74 E-value=3.1e-08 Score=85.08 Aligned_cols=61 Identities=18% Similarity=0.321 Sum_probs=53.6
Q ss_pred HHHHHHHhc----cCCCeeEEE-EeCCCccccc--CCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEE
Q 003091 74 ENFLLRTFG----RFGPIASVK-IMWPRTEEER--RRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 137 (848)
Q Consensus 74 e~~L~~~F~----~fG~I~svk-I~~pr~d~~t--g~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V 137 (848)
+++|.++|. +||.|.+|. |+. +..+ +.++|||||+|.+.++|..|+..|||..+.|+.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~---~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYI---DNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEe---CCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 568888888 999999995 664 3334 789999999999999999999999999999999976
No 70
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.71 E-value=3.2e-08 Score=101.28 Aligned_cols=77 Identities=29% Similarity=0.497 Sum_probs=71.8
Q ss_pred EEEEecCCCCCCHHHHHH----HhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEE
Q 003091 62 NLYVGNLSPQVDENFLLR----TFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 137 (848)
Q Consensus 62 ~LfVgNLp~~vte~~L~~----~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V 137 (848)
||||.||+..+..++|+. +|++||.|..|.... +.+.+|-|||.|.+.+.|..|+..|+|+.+.|++|+|
T Consensus 11 TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k------t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 11 TLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK------TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred eEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC------CCCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 999999999999998877 999999999998874 5678899999999999999999999999999999999
Q ss_pred EeccCCC
Q 003091 138 GWGKSVA 144 (848)
Q Consensus 138 ~~ak~~~ 144 (848)
.||+...
T Consensus 85 qyA~s~s 91 (221)
T KOG4206|consen 85 QYAKSDS 91 (221)
T ss_pred ecccCcc
Confidence 9999765
No 71
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.62 E-value=5e-08 Score=107.03 Aligned_cols=86 Identities=24% Similarity=0.411 Sum_probs=80.1
Q ss_pred CCCCCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeE
Q 003091 55 DGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYE 134 (848)
Q Consensus 55 ~~d~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~ 134 (848)
...|.+.+|||++||.+.-..+|-..|..||.|.+.++. .|+.|+-+++||||+|++..+|.+||..|||+.|++++
T Consensus 419 ~eGpeGanlfiyhlPqefgdq~l~~~f~pfG~Vlsakvf---idk~tnlskcfgfvSyen~~sa~~aI~amngfQig~Kr 495 (510)
T KOG0144|consen 419 VEGPEGANLFIYHLPQEFGDQDLIATFQPFGGVLSAKVF---IDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKR 495 (510)
T ss_pred ccCCCccceeeeeCchhhhhHHHHHHhccccceeEEEEE---EecccCHhhhcCcccccchhhhHHHHHHhcchhhcccc
Confidence 356788999999999999999999999999999999988 69999999999999999999999999999999999999
Q ss_pred EEEEeccCC
Q 003091 135 LKIGWGKSV 143 (848)
Q Consensus 135 L~V~~ak~~ 143 (848)
++|......
T Consensus 496 lkVQlk~~~ 504 (510)
T KOG0144|consen 496 LKVQLKRDR 504 (510)
T ss_pred ceEEeeecc
Confidence 999876544
No 72
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.61 E-value=4.9e-08 Score=102.48 Aligned_cols=77 Identities=23% Similarity=0.399 Sum_probs=71.6
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEE
Q 003091 57 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 136 (848)
Q Consensus 57 d~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~ 136 (848)
...+|+|+||||.+.++.++|+..|.+||+|..|+|+ ++|+||.|.-.++|..|+..|||.+++|++|+
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv-----------kdy~fvh~d~~eda~~air~l~~~~~~gk~m~ 143 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV-----------KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMH 143 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccCCceeeeee-----------cceeEEEEeeccchHHHHhcccccccccceee
Confidence 3467899999999999999999999999999999999 38999999999999999999999999999999
Q ss_pred EEeccCCC
Q 003091 137 IGWGKSVA 144 (848)
Q Consensus 137 V~~ak~~~ 144 (848)
|..+.+.-
T Consensus 144 vq~stsrl 151 (346)
T KOG0109|consen 144 VQLSTSRL 151 (346)
T ss_pred eeeecccc
Confidence 99877653
No 73
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.49 E-value=4.1e-07 Score=102.19 Aligned_cols=83 Identities=19% Similarity=0.318 Sum_probs=74.6
Q ss_pred CccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEEE
Q 003091 59 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 138 (848)
Q Consensus 59 ~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V~ 138 (848)
.+.||||.+|...+...+|+.+|++||.|+-.+|+ ++..+--.++||||++.+.++|.+||..|+-..|.|+-|.|.
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVV---TNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVE 480 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVV---TNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVE 480 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeee---ecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeee
Confidence 35699999999999999999999999999999999 454445568999999999999999999999999999999999
Q ss_pred eccCCC
Q 003091 139 WGKSVA 144 (848)
Q Consensus 139 ~ak~~~ 144 (848)
-+|.-+
T Consensus 481 kaKNEp 486 (940)
T KOG4661|consen 481 KAKNEP 486 (940)
T ss_pred ecccCc
Confidence 888654
No 74
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.46 E-value=3.1e-07 Score=103.42 Aligned_cols=76 Identities=24% Similarity=0.460 Sum_probs=69.7
Q ss_pred EEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEeccC
Q 003091 63 LYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKS 142 (848)
Q Consensus 63 LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V~~ak~ 142 (848)
|||-||++.++...|..+|+.||.|.+|+++. +. .| ++|| ||+|.+.++|.+|+..|||..+.|+.|.|+....
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~---~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~ 152 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVAT---DE-NG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFER 152 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEE---cC-CC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccc
Confidence 99999999999999999999999999999994 43 33 8899 9999999999999999999999999999988765
Q ss_pred CC
Q 003091 143 VA 144 (848)
Q Consensus 143 ~~ 144 (848)
..
T Consensus 153 ~~ 154 (369)
T KOG0123|consen 153 KE 154 (369)
T ss_pred hh
Confidence 43
No 75
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.44 E-value=1.7e-07 Score=108.64 Aligned_cols=85 Identities=24% Similarity=0.415 Sum_probs=76.8
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEE
Q 003091 57 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 136 (848)
Q Consensus 57 d~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~ 136 (848)
....|+|+|.|||+..+-.+++.+|+.||.|.+|+|.. -...+.++|||||.|.++.+|.+|+.+|.+..+.|+.|.
T Consensus 610 kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPK---K~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLV 686 (725)
T KOG0110|consen 610 KKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPK---KIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLV 686 (725)
T ss_pred ccccceeeeeccchHHHHHHHHHHHhcccceeeeccch---hhcchhhccceeeeccCcHHHHHHHHhhcccceechhhh
Confidence 44578999999999999999999999999999999973 245566899999999999999999999999999999999
Q ss_pred EEeccCCC
Q 003091 137 IGWGKSVA 144 (848)
Q Consensus 137 V~~ak~~~ 144 (848)
+.||+...
T Consensus 687 LEwA~~d~ 694 (725)
T KOG0110|consen 687 LEWAKSDN 694 (725)
T ss_pred eehhccch
Confidence 99998764
No 76
>KOG1847 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.44 E-value=8.6e-07 Score=101.08 Aligned_cols=58 Identities=24% Similarity=0.441 Sum_probs=53.7
Q ss_pred cccCCCCchhhhhHHHHHHHHHhhccHHHHHHHHHhcCCCCcccccccCCCCCcceeeE
Q 003091 197 IMVIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVW 255 (848)
Q Consensus 197 i~v~~P~d~~~~~~Id~~a~~V~~~G~~FE~~l~~~e~~np~f~FL~d~~s~~h~YYrw 255 (848)
+.+..|....+-.||.++|.||.++|.+||-+|+.++++||+|.||- +++-.|.||+|
T Consensus 178 ~~~eLPpt~KlH~IIerTaSFV~~~G~Q~EIvlkaKQ~~N~qFgFL~-fDH~Lnpyykf 235 (878)
T KOG1847|consen 178 LRQELPPTEKLHQIIERTASFVSKHGGQSEIVLKAKQGDNPQFGFLM-FDHHLNPYYKF 235 (878)
T ss_pred ccccCCchHHHHHHHHHHHHHHhhcCcceEEEeeeccCCCcccceec-cccccCHHHHH
Confidence 45667778899999999999999999999999999999999999997 88999999997
No 77
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.44 E-value=4.9e-07 Score=97.14 Aligned_cols=81 Identities=20% Similarity=0.325 Sum_probs=74.3
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEE
Q 003091 58 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 137 (848)
Q Consensus 58 ~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V 137 (848)
.....|||..+.++.++++|+.+|..||+|.+|++-+ +..++.++||||++|.+..+...||..||-+.++|..|+|
T Consensus 208 k~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr---~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRV 284 (544)
T KOG0124|consen 208 KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLAR---APTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRV 284 (544)
T ss_pred HhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeec---cCCCCCccceeeEEeccccchHHHhhhcchhhcccceEec
Confidence 3456899999999999999999999999999999985 6667789999999999999999999999999999999999
Q ss_pred Eecc
Q 003091 138 GWGK 141 (848)
Q Consensus 138 ~~ak 141 (848)
+-+-
T Consensus 285 Gk~v 288 (544)
T KOG0124|consen 285 GKCV 288 (544)
T ss_pred cccc
Confidence 7654
No 78
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.41 E-value=1.2e-06 Score=89.09 Aligned_cols=84 Identities=21% Similarity=0.277 Sum_probs=70.5
Q ss_pred ccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceec---CeEEE
Q 003091 60 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVY---EYELK 136 (848)
Q Consensus 60 ~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~---G~~L~ 136 (848)
-.||||.+||.+|...+|..+|-.|-.-..+.|-+ +++.....+.+|||+|.++.+|.+|+++|||..++ +..|+
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~--Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKY--TSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCccceeeee--ccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 56999999999999999999999987766665553 33333345589999999999999999999999984 79999
Q ss_pred EEeccCCCC
Q 003091 137 IGWGKSVAL 145 (848)
Q Consensus 137 V~~ak~~~~ 145 (848)
|.+||+...
T Consensus 112 iElAKSNtK 120 (284)
T KOG1457|consen 112 IELAKSNTK 120 (284)
T ss_pred eeehhcCcc
Confidence 999997654
No 79
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.37 E-value=9.8e-07 Score=89.22 Aligned_cols=80 Identities=18% Similarity=0.292 Sum_probs=71.6
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHhccC-CCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEE
Q 003091 57 DPQTTNLYVGNLSPQVDENFLLRTFGRF-GPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYEL 135 (848)
Q Consensus 57 d~~~t~LfVgNLp~~vte~~L~~~F~~f-G~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L 135 (848)
.....-+||+.+|..+.+..+..+|.+| |.|..+++-+ +..||.++|||||+|++.+.|.-|-+.||+..+.|+.|
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsR---nkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL 122 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSR---NKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLL 122 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeec---ccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhhee
Confidence 3445679999999999999999999988 6677777754 77899999999999999999999999999999999999
Q ss_pred EEEe
Q 003091 136 KIGW 139 (848)
Q Consensus 136 ~V~~ 139 (848)
.|.+
T Consensus 123 ~c~v 126 (214)
T KOG4208|consen 123 ECHV 126 (214)
T ss_pred eeEE
Confidence 9987
No 80
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.34 E-value=9.5e-07 Score=102.58 Aligned_cols=80 Identities=26% Similarity=0.360 Sum_probs=69.4
Q ss_pred cEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccc-cCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEe
Q 003091 61 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEE-RRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 139 (848)
Q Consensus 61 t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~-tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V~~ 139 (848)
|.|||.||++.+|.+.|..+|.++|.|.+|.|..-+ ++. .-.+.|||||+|.+.++|.+|+..|+|..|+|+.|.|.+
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkk-d~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~ 594 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKK-DPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKI 594 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccc-cccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEe
Confidence 349999999999999999999999999999887411 111 223559999999999999999999999999999999999
Q ss_pred cc
Q 003091 140 GK 141 (848)
Q Consensus 140 ak 141 (848)
+.
T Consensus 595 S~ 596 (725)
T KOG0110|consen 595 SE 596 (725)
T ss_pred cc
Confidence 87
No 81
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.34 E-value=9.5e-07 Score=99.49 Aligned_cols=74 Identities=30% Similarity=0.536 Sum_probs=68.6
Q ss_pred cEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEec
Q 003091 61 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWG 140 (848)
Q Consensus 61 t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V~~a 140 (848)
..|||| ++||+..|.++|+++|+|.+|+|.+ |. | +-|||||.|.++.+|++|+..||...+.|++|+|.|+
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~---d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s 72 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCR---DA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWS 72 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEee---cC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehh
Confidence 468999 9999999999999999999999984 55 4 8999999999999999999999999999999999997
Q ss_pred cCC
Q 003091 141 KSV 143 (848)
Q Consensus 141 k~~ 143 (848)
...
T Consensus 73 ~rd 75 (369)
T KOG0123|consen 73 QRD 75 (369)
T ss_pred ccC
Confidence 644
No 82
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.30 E-value=1.2e-06 Score=91.15 Aligned_cols=81 Identities=26% Similarity=0.454 Sum_probs=71.3
Q ss_pred CccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCce-ecC--eEE
Q 003091 59 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVV-VYE--YEL 135 (848)
Q Consensus 59 ~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~-i~G--~~L 135 (848)
...+||||-|...-.|++++.+|..||.|.+|.+++ ...|.++||+||.|.+..+|..||..|+|.. +-| ..|
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlr----g~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSL 93 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLR----GPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSL 93 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEec----CCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccce
Confidence 456899999999999999999999999999999984 3457899999999999999999999999975 444 678
Q ss_pred EEEeccCC
Q 003091 136 KIGWGKSV 143 (848)
Q Consensus 136 ~V~~ak~~ 143 (848)
.|.||...
T Consensus 94 VVK~ADTd 101 (371)
T KOG0146|consen 94 VVKFADTD 101 (371)
T ss_pred EEEeccch
Confidence 89988754
No 83
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.30 E-value=2.8e-06 Score=91.55 Aligned_cols=88 Identities=15% Similarity=0.246 Sum_probs=76.5
Q ss_pred CCCCCCCccEEEEecCCCCCCHHHHHHHhccCCCeeE--------EEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHH
Q 003091 53 FDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIAS--------VKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDE 124 (848)
Q Consensus 53 ~~~~d~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~s--------vkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~ 124 (848)
+......+|+|||.|||.++|.+++..+|++||.|.. |++.. +. .|+.+|=|.|+|...++.+-|+..
T Consensus 127 ~~~~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYr---d~-~G~lKGDaLc~y~K~ESVeLA~~i 202 (382)
T KOG1548|consen 127 FNPEPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYR---DN-QGKLKGDALCCYIKRESVELAIKI 202 (382)
T ss_pred cCcccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEe---cC-CCCccCceEEEeecccHHHHHHHH
Confidence 3334566889999999999999999999999998863 77773 33 489999999999999999999999
Q ss_pred cCCceecCeEEEEEeccCCC
Q 003091 125 MQGVVVYEYELKIGWGKSVA 144 (848)
Q Consensus 125 lnG~~i~G~~L~V~~ak~~~ 144 (848)
|++..+.|+.|+|.-|+-..
T Consensus 203 lDe~~~rg~~~rVerAkfq~ 222 (382)
T KOG1548|consen 203 LDEDELRGKKLRVERAKFQM 222 (382)
T ss_pred hCcccccCcEEEEehhhhhh
Confidence 99999999999999887543
No 84
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.23 E-value=2.3e-06 Score=94.09 Aligned_cols=77 Identities=18% Similarity=0.265 Sum_probs=69.5
Q ss_pred CCCCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEE
Q 003091 56 GDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYEL 135 (848)
Q Consensus 56 ~d~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L 135 (848)
..+..|+|||.|||+++|.+.|++-|-.||.|..+.||- .|+++| .|.|.++++|++||..|||..++|+.|
T Consensus 532 aarKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime------~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I 603 (608)
T KOG4212|consen 532 AARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIME------NGKSKG--VVRFFSPEDAERACALMNGSRLDGRNI 603 (608)
T ss_pred ccccccEEEEecCCccccHHHHHHHHHhccceehhhhhc------cCCccc--eEEecCHHHHHHHHHHhccCcccCcee
Confidence 346678999999999999999999999999999999983 455555 899999999999999999999999999
Q ss_pred EEEec
Q 003091 136 KIGWG 140 (848)
Q Consensus 136 ~V~~a 140 (848)
+|.|.
T Consensus 604 ~V~y~ 608 (608)
T KOG4212|consen 604 KVTYF 608 (608)
T ss_pred eeeeC
Confidence 99873
No 85
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.23 E-value=3.7e-06 Score=88.75 Aligned_cols=85 Identities=25% Similarity=0.316 Sum_probs=75.3
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEE
Q 003091 57 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 136 (848)
Q Consensus 57 d~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~ 136 (848)
+...+.|+|.|||..|++.+|+++|..||.+..+-|.+ ...|.+.|+|-|.|...++|.+|+..+||+.++|++|+
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy----~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk 155 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHY----DRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMK 155 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeecc----CCCCCCCccceeeecchHhHHHHHHHhcCcccCCceee
Confidence 34457899999999999999999999999999988885 34788999999999999999999999999999999999
Q ss_pred EEeccCCCC
Q 003091 137 IGWGKSVAL 145 (848)
Q Consensus 137 V~~ak~~~~ 145 (848)
+....+..+
T Consensus 156 ~~~i~~~~~ 164 (243)
T KOG0533|consen 156 IEIISSPSQ 164 (243)
T ss_pred eEEecCccc
Confidence 987665543
No 86
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.22 E-value=4.2e-06 Score=92.08 Aligned_cols=77 Identities=18% Similarity=0.316 Sum_probs=70.6
Q ss_pred CccEEEEecCCCCCCHHHHHHHhc-cCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEE
Q 003091 59 QTTNLYVGNLSPQVDENFLLRTFG-RFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 137 (848)
Q Consensus 59 ~~t~LfVgNLp~~vte~~L~~~F~-~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V 137 (848)
....+||.|+|+++..++|+.+|. +.|.|..|.++. ...|+.+|||.|+|.+++.+++|++.||...+.|++|+|
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~----D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~v 118 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLF----DESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVV 118 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeec----ccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEE
Confidence 455699999999999999999995 899999999984 457899999999999999999999999999999999999
Q ss_pred Ee
Q 003091 138 GW 139 (848)
Q Consensus 138 ~~ 139 (848)
.-
T Consensus 119 KE 120 (608)
T KOG4212|consen 119 KE 120 (608)
T ss_pred ec
Confidence 53
No 87
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.11 E-value=5.6e-06 Score=87.38 Aligned_cols=83 Identities=16% Similarity=0.236 Sum_probs=76.4
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEE
Q 003091 57 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 136 (848)
Q Consensus 57 d~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~ 136 (848)
..+.+.+||||+.+.+|.+.+..+|..||.|..|.|. +|..++.++||+||+|.+.+.++.|+. |||..|.|..+.
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~---~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~ 173 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVP---KDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIE 173 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeee---ccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccce
Confidence 4556799999999999999999999999999999998 477888899999999999999999998 999999999999
Q ss_pred EEeccCC
Q 003091 137 IGWGKSV 143 (848)
Q Consensus 137 V~~ak~~ 143 (848)
|.|-+..
T Consensus 174 vt~~r~~ 180 (231)
T KOG4209|consen 174 VTLKRTN 180 (231)
T ss_pred eeeeeee
Confidence 9997755
No 88
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.08 E-value=3.4e-06 Score=87.50 Aligned_cols=77 Identities=26% Similarity=0.497 Sum_probs=71.6
Q ss_pred CccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEEE
Q 003091 59 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 138 (848)
Q Consensus 59 ~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V~ 138 (848)
....||.|.|..+|+.+.|...|.+|-.....++++ |..||+++|||||.|.+.+++.+|+.+|||+.++.++|++.
T Consensus 189 ~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviR---dkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklR 265 (290)
T KOG0226|consen 189 DDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIR---DKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLR 265 (290)
T ss_pred ccceeecccccccccHHHHHHHHHhccchhhccccc---cccccccccceeeeecCHHHHHHHHHhhcccccccchhHhh
Confidence 346899999999999999999999999888888884 88899999999999999999999999999999999998874
No 89
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.05 E-value=3.1e-06 Score=87.58 Aligned_cols=71 Identities=23% Similarity=0.426 Sum_probs=66.0
Q ss_pred cEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEec
Q 003091 61 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWG 140 (848)
Q Consensus 61 t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V~~a 140 (848)
..+|||+||+.+.+.+|+.+|..||.|..|.+. .|||||.|.+..+|..||..+||+.|.|-.+.|.|+
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk-----------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~ 70 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK-----------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHA 70 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee-----------cccceeccCchhhhhcccchhcCceecceeeeeecc
Confidence 468999999999999999999999999999876 388999999999999999999999999988999997
Q ss_pred cC
Q 003091 141 KS 142 (848)
Q Consensus 141 k~ 142 (848)
+.
T Consensus 71 r~ 72 (216)
T KOG0106|consen 71 RG 72 (216)
T ss_pred cc
Confidence 74
No 90
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.04 E-value=1.9e-05 Score=89.64 Aligned_cols=79 Identities=25% Similarity=0.327 Sum_probs=65.5
Q ss_pred ccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEe
Q 003091 60 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 139 (848)
Q Consensus 60 ~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V~~ 139 (848)
..+|||.|||+++++.+|+++|.+||.|+...|.. -...++..+||||+|.+.++++.||.+- -..|+|+.|.|.-
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~v---r~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig~~kl~Vee 363 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQV---RSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEIGGRKLNVEE 363 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEE---eccCCCcCceEEEEEeecchhhhhhhcC-ccccCCeeEEEEe
Confidence 34599999999999999999999999999988873 1112344499999999999999999765 6778999999986
Q ss_pred ccC
Q 003091 140 GKS 142 (848)
Q Consensus 140 ak~ 142 (848)
-+.
T Consensus 364 k~~ 366 (419)
T KOG0116|consen 364 KRP 366 (419)
T ss_pred ccc
Confidence 543
No 91
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.03 E-value=4.4e-06 Score=91.41 Aligned_cols=83 Identities=22% Similarity=0.313 Sum_probs=71.6
Q ss_pred CccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEEE
Q 003091 59 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 138 (848)
Q Consensus 59 ~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V~ 138 (848)
..++||||+|++.++++.|+..|++||.|..|.||. |..++++++|+||+|.+.+...+++.. .-..|+|+.|.+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~---d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k 80 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMR---DPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPK 80 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEec---cCCCCCcccccceecCCCcchheeecc-cccccCCccccce
Confidence 568999999999999999999999999999999995 888899999999999999988888743 3466888888887
Q ss_pred eccCCCC
Q 003091 139 WGKSVAL 145 (848)
Q Consensus 139 ~ak~~~~ 145 (848)
-|.+...
T Consensus 81 ~av~r~~ 87 (311)
T KOG4205|consen 81 RAVSRED 87 (311)
T ss_pred eccCccc
Confidence 6665543
No 92
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=97.91 E-value=1.3e-05 Score=87.91 Aligned_cols=82 Identities=23% Similarity=0.354 Sum_probs=73.7
Q ss_pred ccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEe
Q 003091 60 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 139 (848)
Q Consensus 60 ~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V~~ 139 (848)
+..||||+||+++++.+|+..|.+||.|..+-+| .|..+.+.++||||+|.+.+++..++ ......|+|+.+.|.-
T Consensus 97 tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~---~d~~~~~~rgFgfv~~~~e~sVdkv~-~~~f~~~~gk~vevkr 172 (311)
T KOG4205|consen 97 TKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIM---YDKTTSRPRGFGFVTFDSEDSVDKVT-LQKFHDFNGKKVEVKR 172 (311)
T ss_pred eeEEEecCcCCCCchHHHhhhhhccceeEeeEEe---ecccccccccceeeEeccccccceec-ccceeeecCceeeEee
Confidence 4589999999999999999999999999999999 58899999999999999999998886 4666789999999988
Q ss_pred ccCCCC
Q 003091 140 GKSVAL 145 (848)
Q Consensus 140 ak~~~~ 145 (848)
|-++.+
T Consensus 173 A~pk~~ 178 (311)
T KOG4205|consen 173 AIPKEV 178 (311)
T ss_pred ccchhh
Confidence 877654
No 93
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=97.87 E-value=5.6e-06 Score=84.20 Aligned_cols=75 Identities=27% Similarity=0.258 Sum_probs=67.1
Q ss_pred ccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEe
Q 003091 60 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 139 (848)
Q Consensus 60 ~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V~~ 139 (848)
..+|||+|+...|+|+-|.++|-+.|+|..|.|.. ...+..+ ||||.|.+..+..-|++.|||..+.+.+++|.+
T Consensus 9 drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~----~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~ 83 (267)
T KOG4454|consen 9 DRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPS----GQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTL 83 (267)
T ss_pred hhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCC----CccCCCc-eeeeecccccchhhhhhhcccchhccchhhccc
Confidence 46999999999999999999999999999999872 2334445 999999999999999999999999999998876
No 94
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.78 E-value=1.6e-05 Score=90.53 Aligned_cols=72 Identities=28% Similarity=0.403 Sum_probs=65.1
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEE
Q 003091 57 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 136 (848)
Q Consensus 57 d~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~ 136 (848)
+....+|+|-|||..|++++|..+|+.||.|..|+.- ...++..||+|.+..+|++|+++|++..|.|+.|+
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t--------~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRET--------PNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcc--------cccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 4556789999999999999999999999999996543 35678999999999999999999999999999988
No 95
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.77 E-value=0.00019 Score=79.11 Aligned_cols=78 Identities=23% Similarity=0.485 Sum_probs=71.0
Q ss_pred ccEEEEecCCC-CCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEEE
Q 003091 60 TTNLYVGNLSP-QVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 138 (848)
Q Consensus 60 ~t~LfVgNLp~-~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V~ 138 (848)
++.|.|.||.. .||.+.|.-+|+-||.|..|+|++ +.+--|.|.|.+...|+-|+..|+|..|.|++|+|.
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~--------nkkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt 368 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILY--------NKKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVT 368 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeee--------cCCcceeeeecchhHHHHHHHHhhcceecCceEEEe
Confidence 67899999986 799999999999999999999996 234679999999999999999999999999999999
Q ss_pred eccCCCC
Q 003091 139 WGKSVAL 145 (848)
Q Consensus 139 ~ak~~~~ 145 (848)
++|...+
T Consensus 369 ~SKH~~v 375 (492)
T KOG1190|consen 369 LSKHTNV 375 (492)
T ss_pred eccCccc
Confidence 9997765
No 96
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.72 E-value=2.7e-05 Score=79.55 Aligned_cols=67 Identities=22% Similarity=0.367 Sum_probs=57.6
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCcee
Q 003091 57 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVV 130 (848)
Q Consensus 57 d~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i 130 (848)
.....+|||.||.+++||++|+.+|+.|....-++|.- ..+...|||.|++.+.|..|+..|+|..|
T Consensus 207 ~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~-------~~g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 207 ARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRA-------RGGMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred chhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEec-------CCCcceEeecHHHHHHHHHHHHHhhccee
Confidence 34456899999999999999999999999888778762 23456899999999999999999999877
No 97
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.67 E-value=9.6e-05 Score=80.64 Aligned_cols=85 Identities=19% Similarity=0.217 Sum_probs=76.2
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHhccCCCeeE--------EEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCc
Q 003091 57 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIAS--------VKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGV 128 (848)
Q Consensus 57 d~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~s--------vkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~ 128 (848)
....-+|||-+||.++++++|..+|.+||.|.. |.|. ++.+|+..++-|.|+|.+...|++|+..++++
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y---~dkeT~~~KGeatvS~~D~~~akaai~~~agk 139 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIY---TDKETGAPKGEATVSYEDPPAAKAAIEWFAGK 139 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhcc---ccccccCcCCceeeeecChhhhhhhhhhhccc
Confidence 455678999999999999999999999998853 4444 68899999999999999999999999999999
Q ss_pred eecCeEEEEEeccCCC
Q 003091 129 VVYEYELKIGWGKSVA 144 (848)
Q Consensus 129 ~i~G~~L~V~~ak~~~ 144 (848)
.+.|..|+|.+|....
T Consensus 140 df~gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 140 DFCGNTIKVSLAERRT 155 (351)
T ss_pred cccCCCchhhhhhhcc
Confidence 9999999999887654
No 98
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.61 E-value=0.00021 Score=62.86 Aligned_cols=68 Identities=24% Similarity=0.363 Sum_probs=49.4
Q ss_pred cEEEEecCCCCCCHHH----HHHHhccCCC-eeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEE
Q 003091 61 TNLYVGNLSPQVDENF----LLRTFGRFGP-IASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYEL 135 (848)
Q Consensus 61 t~LfVgNLp~~vte~~----L~~~F~~fG~-I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L 135 (848)
+.|||.|||.+.+... |.+++..||. |.+| ..+.|+|.|.+.+.|.+|.+.|+|..+.|+.|
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v-------------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI 69 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV-------------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKI 69 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE---------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE-------------eCCEEEEEeCCHHHHHHHHHhhcccccccceE
Confidence 5799999999998754 7788889984 5443 23789999999999999999999999999999
Q ss_pred EEEecc
Q 003091 136 KIGWGK 141 (848)
Q Consensus 136 ~V~~ak 141 (848)
.|.|..
T Consensus 70 ~v~~~~ 75 (90)
T PF11608_consen 70 SVSFSP 75 (90)
T ss_dssp EEESS-
T ss_pred EEEEcC
Confidence 999964
No 99
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.58 E-value=0.00036 Score=63.90 Aligned_cols=81 Identities=11% Similarity=0.165 Sum_probs=68.2
Q ss_pred cEEEEecCCCCCCHHHHHHHhcc--CCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceec----CeE
Q 003091 61 TNLYVGNLSPQVDENFLLRTFGR--FGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVY----EYE 134 (848)
Q Consensus 61 t~LfVgNLp~~vte~~L~~~F~~--fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~----G~~ 134 (848)
|||-|.|+|...|.++|.+++.. .|...-+.+. .|..++.+.|||||.|.++..|..-...++|..|. .+.
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLP---iDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kv 78 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLP---IDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKV 78 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEee---eeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcE
Confidence 79999999999999999998853 2445555555 58888889999999999999999999999999985 578
Q ss_pred EEEEeccCCC
Q 003091 135 LKIGWGKSVA 144 (848)
Q Consensus 135 L~V~~ak~~~ 144 (848)
+.|.||+-++
T Consensus 79 c~i~yAriQG 88 (97)
T PF04059_consen 79 CEISYARIQG 88 (97)
T ss_pred EEEehhHhhC
Confidence 8999987543
No 100
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.46 E-value=0.00017 Score=82.98 Aligned_cols=82 Identities=15% Similarity=0.332 Sum_probs=76.1
Q ss_pred ccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEe
Q 003091 60 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 139 (848)
Q Consensus 60 ~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V~~ 139 (848)
...+|||+||..+++..+.++...||++....++ .+..+|.++||||.+|.+..-...|+..|||+.++++.|.|..
T Consensus 289 ~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv---~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~ 365 (500)
T KOG0120|consen 289 PNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLV---KDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQR 365 (500)
T ss_pred cchhhhccCcCccCHHHHHHHHHhcccchhheee---cccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeeh
Confidence 3479999999999999999999999999999888 5888899999999999999999999999999999999999998
Q ss_pred ccCCC
Q 003091 140 GKSVA 144 (848)
Q Consensus 140 ak~~~ 144 (848)
|-...
T Consensus 366 A~~g~ 370 (500)
T KOG0120|consen 366 AIVGA 370 (500)
T ss_pred hhccc
Confidence 87554
No 101
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.35 E-value=0.00076 Score=72.63 Aligned_cols=83 Identities=19% Similarity=0.378 Sum_probs=63.3
Q ss_pred ccEEEEecCCCCCCHHH----H--HHHhccCCCeeEEEEeCCCcccccCCcccE-EEEEeCCHHHHHHHHHHcCCceecC
Q 003091 60 TTNLYVGNLSPQVDENF----L--LRTFGRFGPIASVKIMWPRTEEERRRQRNC-GFVAFMNRADGQAAKDEMQGVVVYE 132 (848)
Q Consensus 60 ~t~LfVgNLp~~vte~~----L--~~~F~~fG~I~svkI~~pr~d~~tg~~rg~-gFV~F~~~~~A~~Ai~~lnG~~i~G 132 (848)
..-+||-+|++.+..++ | .++|++||.|..|.|-. ++.........+ .||+|.+.++|.+||.+.+|..++|
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNk-kt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNK-KTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecc-cccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 34689999999887765 3 37899999999987763 111111111113 3999999999999999999999999
Q ss_pred eEEEEEeccCC
Q 003091 133 YELKIGWGKSV 143 (848)
Q Consensus 133 ~~L~V~~ak~~ 143 (848)
+.|+..||..+
T Consensus 193 r~lkatYGTTK 203 (480)
T COG5175 193 RVLKATYGTTK 203 (480)
T ss_pred ceEeeecCchH
Confidence 99999998754
No 102
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=97.28 E-value=0.0011 Score=68.49 Aligned_cols=79 Identities=20% Similarity=0.458 Sum_probs=70.4
Q ss_pred CCCCCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceec-Ce
Q 003091 55 DGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVY-EY 133 (848)
Q Consensus 55 ~~d~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~-G~ 133 (848)
...+++..||+.|||..++.+.|..+|.+|+....|+++.+ ..+.|||+|.+...|..|...++|..|- ..
T Consensus 141 ~~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~--------~~~iAfve~~~d~~a~~a~~~lq~~~it~~~ 212 (221)
T KOG4206|consen 141 QMAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPP--------RSGIAFVEFLSDRQASAAQQALQGFKITKKN 212 (221)
T ss_pred cCCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccC--------CCceeEEecchhhhhHHHhhhhccceeccCc
Confidence 33567789999999999999999999999999999999842 3578999999999999999999999986 88
Q ss_pred EEEEEecc
Q 003091 134 ELKIGWGK 141 (848)
Q Consensus 134 ~L~V~~ak 141 (848)
.|.|.|++
T Consensus 213 ~m~i~~a~ 220 (221)
T KOG4206|consen 213 TMQITFAK 220 (221)
T ss_pred eEEecccC
Confidence 99998876
No 103
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.20 E-value=0.00015 Score=79.46 Aligned_cols=74 Identities=19% Similarity=0.412 Sum_probs=58.7
Q ss_pred EEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCccc-ccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEE
Q 003091 62 NLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEE-ERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 137 (848)
Q Consensus 62 ~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~-~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V 137 (848)
.|-|.||.+.+|.++++.+|+..|.|..++++ |..+. ......-.|||.|.+...+..|- .|.++++-++.|.|
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrly-p~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv 83 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLY-PNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIV 83 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhcccccccccc-CCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEEE
Confidence 79999999999999999999999999999988 42222 22334568999999999998884 57777766666555
No 104
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.05 E-value=0.00051 Score=80.15 Aligned_cols=26 Identities=35% Similarity=0.516 Sum_probs=22.3
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHH
Q 003091 693 GMNEEQRQKLRRLEVSLIEYRESLEE 718 (848)
Q Consensus 693 ~~~~~~r~kl~~~~~~~~~~r~~~ee 718 (848)
-+++|.|.||+.++-..+.++.+|+-
T Consensus 698 k~~de~~~~~~~~~ss~~~~~d~l~s 723 (877)
T KOG0151|consen 698 KYDDEDRDKLRDIESSGSDNQDELES 723 (877)
T ss_pred ccchhhhHHHhhhhhhccccccccCC
Confidence 45889999999999999999988774
No 105
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=96.95 E-value=0.00053 Score=74.84 Aligned_cols=81 Identities=22% Similarity=0.292 Sum_probs=73.2
Q ss_pred ccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEe
Q 003091 60 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 139 (848)
Q Consensus 60 ~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V~~ 139 (848)
.+-++|+||+..+++++|+.+|..+|.|..|++. ++..++..+|||||.|+....+..|+.. +...+.|+++.|.+
T Consensus 185 ~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~---~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 260 (285)
T KOG4210|consen 185 DTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLP---TDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEE 260 (285)
T ss_pred ccceeecccccccchHHHhhhccCcCcceeeccC---CCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCccccccc
Confidence 3445599999999999999999999999999998 5788999999999999999999999887 88999999999999
Q ss_pred ccCCC
Q 003091 140 GKSVA 144 (848)
Q Consensus 140 ak~~~ 144 (848)
+.+.+
T Consensus 261 ~~~~~ 265 (285)
T KOG4210|consen 261 DEPRP 265 (285)
T ss_pred CCCCc
Confidence 87654
No 106
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.82 E-value=0.0041 Score=74.81 Aligned_cols=83 Identities=25% Similarity=0.397 Sum_probs=73.0
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecC--eE
Q 003091 57 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYE--YE 134 (848)
Q Consensus 57 d~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G--~~ 134 (848)
...+|.+|||+|.+.+....|...|..||.|..|.+- +...|++|.|.+...|+.|+..|-|..|+| ++
T Consensus 452 st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~---------hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r 522 (975)
T KOG0112|consen 452 STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYR---------HGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRR 522 (975)
T ss_pred cccceeeccCCCCCCChHHHHHHHhhccCcceeeecc---------cCCcceeeecccCccchhhHHHHhcCcCCCCCcc
Confidence 3457889999999999999999999999999987765 355799999999999999999999999987 78
Q ss_pred EEEEeccCCCCCCC
Q 003091 135 LKIGWGKSVALPSQ 148 (848)
Q Consensus 135 L~V~~ak~~~~p~~ 148 (848)
|.|.||.....+++
T Consensus 523 ~rvdla~~~~~~Pq 536 (975)
T KOG0112|consen 523 LRVDLASPPGATPQ 536 (975)
T ss_pred cccccccCCCCChh
Confidence 99999998765443
No 107
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=96.75 E-value=0.0007 Score=77.43 Aligned_cols=80 Identities=15% Similarity=0.271 Sum_probs=73.0
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEE
Q 003091 58 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 137 (848)
Q Consensus 58 ~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V 137 (848)
....++|+-.|+..+++-+|.++|+.+|+|..|.|+ +|..+++++|.|||+|.+......|| +|.|..+.|.+|.|
T Consensus 177 Rd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI---~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~v 252 (549)
T KOG0147|consen 177 RDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRII---GDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIV 252 (549)
T ss_pred HhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEee---ccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEe
Confidence 345689999999999999999999999999999999 68889999999999999999999998 79999999999999
Q ss_pred Eecc
Q 003091 138 GWGK 141 (848)
Q Consensus 138 ~~ak 141 (848)
....
T Consensus 253 q~sE 256 (549)
T KOG0147|consen 253 QLSE 256 (549)
T ss_pred cccH
Confidence 7643
No 108
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=96.72 E-value=0.0011 Score=69.00 Aligned_cols=70 Identities=26% Similarity=0.332 Sum_probs=62.7
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEE
Q 003091 57 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 136 (848)
Q Consensus 57 d~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~ 136 (848)
....+.|+|.|++..+...+|...|.++|.+..+.++ .+++||+|....+|..|+..++|..+.|+.|.
T Consensus 96 ~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~-----------~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~ 164 (216)
T KOG0106|consen 96 SRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDAR-----------RNFAFVEFSEQEDAKRALEKLDGKKLNGRRIS 164 (216)
T ss_pred ccccceeeeccchhhhhHHHHhhhhcccCCCchhhhh-----------ccccceeehhhhhhhhcchhccchhhcCceee
Confidence 3456789999999999999999999999998554443 48999999999999999999999999999999
Q ss_pred E
Q 003091 137 I 137 (848)
Q Consensus 137 V 137 (848)
+
T Consensus 165 ~ 165 (216)
T KOG0106|consen 165 V 165 (216)
T ss_pred e
Confidence 9
No 109
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=96.66 E-value=0.0044 Score=57.76 Aligned_cols=69 Identities=19% Similarity=0.289 Sum_probs=42.8
Q ss_pred ccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCc-----eecCeE
Q 003091 60 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGV-----VVYEYE 134 (848)
Q Consensus 60 ~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~-----~i~G~~ 134 (848)
++.|+|.+++..++-++|+.+|+.||.|..|.+.. +-.-|||-|.+.+.|+.|+..+.-. .|.+..
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~---------G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~ 71 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSR---------GDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKE 71 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EEEEE--T---------T-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSS
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEecC---------CCCEEEEEECCcchHHHHHHHHHhccCCceEEcCce
Confidence 35789999999999999999999999999998872 4468999999999999998876543 445544
Q ss_pred EEE
Q 003091 135 LKI 137 (848)
Q Consensus 135 L~V 137 (848)
+.+
T Consensus 72 ~~~ 74 (105)
T PF08777_consen 72 VTL 74 (105)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 110
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.66 E-value=0.0018 Score=72.13 Aligned_cols=78 Identities=19% Similarity=0.358 Sum_probs=62.6
Q ss_pred CCCCCCCCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCC---CcccccCC-------cccEEEEEeCCHHHHHHH
Q 003091 52 SFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWP---RTEEERRR-------QRNCGFVAFMNRADGQAA 121 (848)
Q Consensus 52 s~~~~d~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~p---r~d~~tg~-------~rg~gFV~F~~~~~A~~A 121 (848)
.++.....+.+|.+.|||.+-.-+-|.++|+.||.|++|+|..| ..+..... .+-||||+|...+.|.+|
T Consensus 223 ~~~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA 302 (484)
T KOG1855|consen 223 EFDEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKA 302 (484)
T ss_pred CccccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHH
Confidence 34555567889999999999888999999999999999999987 22221222 257999999999999999
Q ss_pred HHHcCCce
Q 003091 122 KDEMQGVV 129 (848)
Q Consensus 122 i~~lnG~~ 129 (848)
.+.|+...
T Consensus 303 ~e~~~~e~ 310 (484)
T KOG1855|consen 303 RELLNPEQ 310 (484)
T ss_pred HHhhchhh
Confidence 98886544
No 111
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=96.41 E-value=0.014 Score=63.39 Aligned_cols=78 Identities=15% Similarity=0.225 Sum_probs=64.6
Q ss_pred cEEEEecCCCCCCHHHHHHHhccCC--CeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeE-EEE
Q 003091 61 TNLYVGNLSPQVDENFLLRTFGRFG--PIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYE-LKI 137 (848)
Q Consensus 61 t~LfVgNLp~~vte~~L~~~F~~fG--~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~-L~V 137 (848)
-.+|||||-+.+|.++|.+.....| .|..+|+. .+...|+++|||.|...+..+.++-++.|-.+.|+|.. ..+
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFF---ENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFF---ENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhh---hcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 3699999999999999999888777 46777777 36667999999999999999999999999999998854 444
Q ss_pred Eecc
Q 003091 138 GWGK 141 (848)
Q Consensus 138 ~~ak 141 (848)
.|.|
T Consensus 158 ~~NK 161 (498)
T KOG4849|consen 158 SYNK 161 (498)
T ss_pred ccch
Confidence 4433
No 112
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=96.40 E-value=0.0081 Score=69.56 Aligned_cols=65 Identities=23% Similarity=0.301 Sum_probs=56.1
Q ss_pred HHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEec
Q 003091 76 FLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWG 140 (848)
Q Consensus 76 ~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V~~a 140 (848)
+++.-+++||.|.+|.|..|..+.....+.|.-||+|.+.++++.|+.+|+|.++.|+.+...|=
T Consensus 425 dvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYy 489 (500)
T KOG0120|consen 425 DVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYY 489 (500)
T ss_pred HHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEec
Confidence 35556889999999999987555666667788999999999999999999999999999988873
No 113
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.34 E-value=0.0011 Score=79.45 Aligned_cols=98 Identities=24% Similarity=0.367 Sum_probs=79.3
Q ss_pred CCCCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEE
Q 003091 56 GDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYEL 135 (848)
Q Consensus 56 ~d~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L 135 (848)
....+.+||+|||+..+++.+|+..|..||.|..|.|-.|. -+....||||.|.+...+..|+..+.|..|....+
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~----~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~ 443 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH----IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTH 443 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC----CCcccchhhhhhhccccCcccchhhcCCccccCcc
Confidence 34557799999999999999999999999999999998654 33455799999999999999999999999987788
Q ss_pred EEEeccCCCCCCCCCCCCCCCc
Q 003091 136 KIGWGKSVALPSQALPAPPPGQ 157 (848)
Q Consensus 136 ~V~~ak~~~~p~~~~~~p~p~~ 157 (848)
+++++.....+.......+++.
T Consensus 444 r~glG~~kst~ttr~~sgglg~ 465 (975)
T KOG0112|consen 444 RIGLGQPKSTPTTRLQSGGLGP 465 (975)
T ss_pred cccccccccccceeeccCCCCC
Confidence 8888865555555444444433
No 114
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=96.30 E-value=0.015 Score=63.82 Aligned_cols=78 Identities=22% Similarity=0.267 Sum_probs=64.9
Q ss_pred ccEEEEecCC--CCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceec--CeEE
Q 003091 60 TTNLYVGNLS--PQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVY--EYEL 135 (848)
Q Consensus 60 ~t~LfVgNLp--~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~--G~~L 135 (848)
+..|.+.=|+ +.+|-+.|..+....|+|..|.|+. ++.--|.|+|.+.+.|++|..+|||..|. -..|
T Consensus 120 N~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfk--------kngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTL 191 (494)
T KOG1456|consen 120 NKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFK--------KNGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTL 191 (494)
T ss_pred CeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEe--------ccceeeEEeechhHHHHHHHhhcccccccccceeE
Confidence 4445555444 5889999999999999999999993 34457999999999999999999999984 3899
Q ss_pred EEEeccCCCC
Q 003091 136 KIGWGKSVAL 145 (848)
Q Consensus 136 ~V~~ak~~~~ 145 (848)
+|.|||+..+
T Consensus 192 KIeyAkP~rl 201 (494)
T KOG1456|consen 192 KIEYAKPTRL 201 (494)
T ss_pred EEEecCccee
Confidence 9999998753
No 115
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=96.18 E-value=0.011 Score=65.55 Aligned_cols=83 Identities=18% Similarity=0.280 Sum_probs=69.9
Q ss_pred CCCCCCCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecC
Q 003091 53 FDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYE 132 (848)
Q Consensus 53 ~~~~d~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G 132 (848)
+...-|++.+|.+.|+|++++|++|+.+|..-|...+..... ++.+.++.+.+.+.+.|..|+-.|++..+++
T Consensus 407 ~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff-------~kd~kmal~q~~sveeA~~ali~~hnh~lge 479 (492)
T KOG1190|consen 407 YQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFF-------QKDRKMALPQLESVEEAIQALIDLHNHYLGE 479 (492)
T ss_pred ccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeec-------CCCcceeecccCChhHhhhhccccccccCCC
Confidence 445667888999999999999999999999888765554432 3466899999999999999999999999976
Q ss_pred e-EEEEEeccC
Q 003091 133 Y-ELKIGWGKS 142 (848)
Q Consensus 133 ~-~L~V~~ak~ 142 (848)
. -|+|+|+|.
T Consensus 480 n~hlRvSFSks 490 (492)
T KOG1190|consen 480 NHHLRVSFSKS 490 (492)
T ss_pred CceEEEEeecc
Confidence 5 899999885
No 116
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=96.13 E-value=0.056 Score=59.51 Aligned_cols=83 Identities=16% Similarity=0.222 Sum_probs=73.0
Q ss_pred CCCCCccEEEEecCCC-CCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCe
Q 003091 55 DGDPQTTNLYVGNLSP-QVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEY 133 (848)
Q Consensus 55 ~~d~~~t~LfVgNLp~-~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~ 133 (848)
.+...++.+.|-+|.. .++-+.|..+|..||.|..|++|. ...|.|.|++-+..+.++|+..||+..+-|.
T Consensus 282 ~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmk--------Tk~gtamVemgd~~aver~v~hLnn~~lfG~ 353 (494)
T KOG1456|consen 282 GGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMK--------TKPGTAMVEMGDAYAVERAVTHLNNIPLFGG 353 (494)
T ss_pred CCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEee--------cccceeEEEcCcHHHHHHHHHHhccCccccc
Confidence 4556788999999997 566788999999999999999994 2348899999999999999999999999999
Q ss_pred EEEEEeccCCCC
Q 003091 134 ELKIGWGKSVAL 145 (848)
Q Consensus 134 ~L~V~~ak~~~~ 145 (848)
+|.|.++|...+
T Consensus 354 kl~v~~SkQ~~v 365 (494)
T KOG1456|consen 354 KLNVCVSKQNFV 365 (494)
T ss_pred eEEEeecccccc
Confidence 999999886654
No 117
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=95.90 E-value=0.036 Score=63.17 Aligned_cols=76 Identities=12% Similarity=0.128 Sum_probs=57.4
Q ss_pred ccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEe
Q 003091 60 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 139 (848)
Q Consensus 60 ~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V~~ 139 (848)
...|-+.+||+.||+++|.++|+---.|...-++ .....++..|-|||+|++.+.|+.|+. -+...|+.+-|.|--
T Consensus 103 d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l---~~d~rgR~tGEAfVqF~sqe~ae~Al~-rhre~iGhRYIEvF~ 178 (510)
T KOG4211|consen 103 DGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILL---PMDQRGRPTGEAFVQFESQESAEIALG-RHRENIGHRYIEVFR 178 (510)
T ss_pred CceEEecCCCccCcHHHHHHHhcCCcccccceee---eccCCCCcccceEEEecCHHHHHHHHH-HHHHhhccceEEeeh
Confidence 3478899999999999999999977555442222 234467788999999999999999985 344566777777643
No 118
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=95.75 E-value=0.02 Score=46.60 Aligned_cols=52 Identities=25% Similarity=0.453 Sum_probs=42.6
Q ss_pred cEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHH
Q 003091 61 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAK 122 (848)
Q Consensus 61 t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai 122 (848)
+.|-|.+.++...+..|. .|..||.|..+.+- ....+.+|.|.++.+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~~vl~-~F~~fGeI~~~~~~---------~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEEVLE-HFASFGEIVDIYVP---------ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHHHHH-HHHhcCCEEEEEcC---------CCCcEEEEEECCHHHHHhhC
Confidence 567888888877766555 88899999998765 24689999999999999985
No 119
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=95.65 E-value=0.032 Score=63.92 Aligned_cols=64 Identities=25% Similarity=0.498 Sum_probs=50.0
Q ss_pred CccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccC--Cccc---EEEEEeCCHHHHHHHHHHc
Q 003091 59 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERR--RQRN---CGFVAFMNRADGQAAKDEM 125 (848)
Q Consensus 59 ~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg--~~rg---~gFV~F~~~~~A~~Ai~~l 125 (848)
-...||||+||++++|+.|...|..||. |++-||+.....+ ..+| |.|+.|++..+...-+.+.
T Consensus 258 ~S~KVFvGGlp~dise~~i~~~F~~FGs---~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC 326 (520)
T KOG0129|consen 258 YSRKVFVGGLPWDITEAQINASFGQFGS---VKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSAC 326 (520)
T ss_pred cccceeecCCCccccHHHHHhhcccccc---eEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHH
Confidence 3568999999999999999999999995 4577885444333 2566 9999999988877665543
No 120
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=95.63 E-value=0.0064 Score=63.89 Aligned_cols=75 Identities=16% Similarity=0.359 Sum_probs=59.9
Q ss_pred CccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCccc------ccCCcc----cEEEEEeCCHHHHHHHHHHcCCc
Q 003091 59 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEE------ERRRQR----NCGFVAFMNRADGQAAKDEMQGV 128 (848)
Q Consensus 59 ~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~------~tg~~r----g~gFV~F~~~~~A~~Ai~~lnG~ 128 (848)
.+-.||++|+|+.++...|+++|+.||.|-.|.+. |-.+. ..|.+. .-|.|+|.+...|.++...|||.
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylq-pE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~ 151 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQ-PEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNT 151 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEec-chhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCC
Confidence 34579999999999999999999999999999887 32222 001222 23789999999999999999999
Q ss_pred eecCeE
Q 003091 129 VVYEYE 134 (848)
Q Consensus 129 ~i~G~~ 134 (848)
.|+|+.
T Consensus 152 ~Iggkk 157 (278)
T KOG3152|consen 152 PIGGKK 157 (278)
T ss_pred ccCCCC
Confidence 999865
No 121
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=95.43 E-value=0.048 Score=62.17 Aligned_cols=77 Identities=16% Similarity=0.155 Sum_probs=62.4
Q ss_pred ccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEe
Q 003091 60 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 139 (848)
Q Consensus 60 ~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V~~ 139 (848)
..-|-+.+||+++|+++|..+|+.|+ |.++.+.+ .+|+..|-|||+|.+.++++.|++ .+-..+..+-|.|-=
T Consensus 10 ~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r-----~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~ 82 (510)
T KOG4211|consen 10 AFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPR-----RNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFT 82 (510)
T ss_pred ceEEEecCCCccccHHHHHHHHhcCc-eeEEEEec-----cCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEc
Confidence 44677889999999999999999996 66765553 468899999999999999999985 666777888888865
Q ss_pred ccCC
Q 003091 140 GKSV 143 (848)
Q Consensus 140 ak~~ 143 (848)
+...
T Consensus 83 ~~~~ 86 (510)
T KOG4211|consen 83 AGGA 86 (510)
T ss_pred cCCc
Confidence 5433
No 122
>PF08312 cwf21: cwf21 domain; InterPro: IPR013170 The cwf21 domain is found in proteins involved in mRNA splicing. Proteins containing this domain have been isolated as a subcomplex of the splicosome in Schizosaccharomyces pombe (Fission yeast) []. In yeast, this domain binds the protein Prp8p [], a large and highly conserved U5 snRNP protein which has been proposed as a protein cofactor at the spliceosomal catalytic centre []. The cwf21 domain is found in, amongst others, the small Cwc21p protein in yeast as well as in the much larger human ortholog SRm300 (serine/arginine repetitive matrix protein). ; PDB: 2E62_A.
Probab=95.41 E-value=0.042 Score=43.43 Aligned_cols=40 Identities=48% Similarity=0.674 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHhhhhhhh
Q 003091 701 KLRRLEVSLIEYRESLEERGIKSSEEIEKKVAIHRKRLESE 741 (848)
Q Consensus 701 kl~~~~~~~~~~r~~~ee~~~~~~ee~~~~~~~~r~~~~~~ 741 (848)
+.|+||+.++++|++||++|. +-++|+.++...|..+...
T Consensus 5 rkR~IElk~~elrd~LEe~g~-~~eeIe~kv~~~R~~L~~~ 44 (46)
T PF08312_consen 5 RKREIELKCLELRDELEEQGY-SEEEIEEKVDELRKKLLEE 44 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHT---HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhc
Confidence 449999999999999999999 6699999999999987654
No 123
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=95.23 E-value=0.025 Score=65.04 Aligned_cols=75 Identities=16% Similarity=0.224 Sum_probs=58.0
Q ss_pred ccEEEEecCCCCCC------HHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceec-C
Q 003091 60 TTNLYVGNLSPQVD------ENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVY-E 132 (848)
Q Consensus 60 ~t~LfVgNLp~~vt------e~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~-G 132 (848)
.+.|+|.|+|.--. ...|..+|+++|+|..+.+. .++++| .+||.|++|.+..+|+.|++.|||+.|+ .
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P---~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldkn 133 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYP---IDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKN 133 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeec---cCccCC-eeeEEEEEecChhhHHHHHHhcccceeccc
Confidence 45789999885222 23467889999998887665 244444 8999999999999999999999999986 4
Q ss_pred eEEEEE
Q 003091 133 YELKIG 138 (848)
Q Consensus 133 ~~L~V~ 138 (848)
+.+.|.
T Consensus 134 Htf~v~ 139 (698)
T KOG2314|consen 134 HTFFVR 139 (698)
T ss_pred ceEEee
Confidence 556654
No 124
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=95.22 E-value=0.038 Score=64.00 Aligned_cols=78 Identities=14% Similarity=0.218 Sum_probs=65.2
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhc-cCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCcee---cCe
Q 003091 58 PQTTNLYVGNLSPQVDENFLLRTFG-RFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVV---YEY 133 (848)
Q Consensus 58 ~~~t~LfVgNLp~~vte~~L~~~F~-~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i---~G~ 133 (848)
+.+..|||.||-.-.|.-+|+.+++ .+|.|... +| | +-+.-|||.|.+.++|.+.+.+|+|..| +++
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-Wm----D----kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK 512 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WM----D----KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPK 512 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHH-HH----H----HhhcceeEecccHHHHHHHHHHHhccccCCCCCc
Confidence 4466799999999999999999999 55566665 33 4 3556789999999999999999999998 678
Q ss_pred EEEEEeccCCC
Q 003091 134 ELKIGWGKSVA 144 (848)
Q Consensus 134 ~L~V~~ak~~~ 144 (848)
.|.+.|+....
T Consensus 513 ~L~adf~~~de 523 (718)
T KOG2416|consen 513 HLIADFVRADE 523 (718)
T ss_pred eeEeeecchhH
Confidence 99999987654
No 125
>KOG0796 consensus Spliceosome subunit [RNA processing and modification]
Probab=95.11 E-value=0.025 Score=61.65 Aligned_cols=24 Identities=25% Similarity=0.202 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 003091 696 EEQRQKLRRLEVSLIEYRESLEER 719 (848)
Q Consensus 696 ~~~r~kl~~~~~~~~~~r~~~ee~ 719 (848)
..-|.||.+|++++...+++..+.
T Consensus 218 ~~iR~~l~eLk~~~~~~~~er~~~ 241 (319)
T KOG0796|consen 218 VLIREKLAELKKEKAKRRKERLEK 241 (319)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHh
Confidence 577999999998888764444433
No 126
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=95.10 E-value=0.077 Score=49.03 Aligned_cols=79 Identities=20% Similarity=0.180 Sum_probs=51.3
Q ss_pred ccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCc-----ccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeE
Q 003091 60 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRT-----EEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYE 134 (848)
Q Consensus 60 ~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~-----d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~ 134 (848)
.+-|.|-+.|+. .-..+...|++||.|.+..-+. +. ........++-.|.|.++.+|.+|+ .-||..|.|..
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~-~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL-~~NG~i~~g~~ 82 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVL-RSSSGINPYPIPSGGNWIHITYDNPLSAQRAL-QKNGTIFSGSL 82 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG-----------E-CCTTEEEEEESSHHHHHHHH-TTTTEEETTCE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeeccc-ccccccccccCCCCCCEEEEECCCHHHHHHHH-HhCCeEEcCcE
Confidence 456888899988 4456667899999998764110 00 0001135678999999999999998 58999998855
Q ss_pred E-EEEecc
Q 003091 135 L-KIGWGK 141 (848)
Q Consensus 135 L-~V~~ak 141 (848)
| -|.|.+
T Consensus 83 mvGV~~~~ 90 (100)
T PF05172_consen 83 MVGVKPCD 90 (100)
T ss_dssp EEEEEE-H
T ss_pred EEEEEEcH
Confidence 4 577664
No 127
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=95.08 E-value=0.058 Score=59.05 Aligned_cols=74 Identities=16% Similarity=0.250 Sum_probs=59.1
Q ss_pred CccEEEEecCCC----CCC-------HHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCC
Q 003091 59 QTTNLYVGNLSP----QVD-------ENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQG 127 (848)
Q Consensus 59 ~~t~LfVgNLp~----~vt-------e~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG 127 (848)
..++|.|.|+=. ..+ .++|.+-..+||.|.+|.|. + ..+.|.+-|.|.+.+.|..||..|+|
T Consensus 264 ~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~----d---~hPdGvvtV~f~n~eeA~~ciq~m~G 336 (382)
T KOG1548|consen 264 ADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVY----D---RHPDGVVTVSFRNNEEADQCIQTMDG 336 (382)
T ss_pred CCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEe----c---cCCCceeEEEeCChHHHHHHHHHhcC
Confidence 356777777632 333 24566778999999999887 2 25679999999999999999999999
Q ss_pred ceecCeEEEEEe
Q 003091 128 VVVYEYELKIGW 139 (848)
Q Consensus 128 ~~i~G~~L~V~~ 139 (848)
..++|+.|....
T Consensus 337 R~fdgRql~A~i 348 (382)
T KOG1548|consen 337 RWFDGRQLTASI 348 (382)
T ss_pred eeecceEEEEEE
Confidence 999999987754
No 128
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=95.05 E-value=0.12 Score=60.90 Aligned_cols=75 Identities=16% Similarity=0.227 Sum_probs=65.0
Q ss_pred cEEEEecCCCCCCHHHHHHHhccCCCe-eEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEe
Q 003091 61 TNLYVGNLSPQVDENFLLRTFGRFGPI-ASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 139 (848)
Q Consensus 61 t~LfVgNLp~~vte~~L~~~F~~fG~I-~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V~~ 139 (848)
+.|-|.|+|++|+-++|.++|.-|-.+ .+|.|-+ .+.|...|-|.|.|++.++|.+|...|+++.|..+.++|..
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~----nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRR----NDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEee----cCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 478899999999999999999999865 4555553 34677888999999999999999999999999999998864
No 129
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=94.78 E-value=0.075 Score=54.51 Aligned_cols=64 Identities=16% Similarity=0.238 Sum_probs=47.6
Q ss_pred CHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcC--CceecCeEEEEEeccCCCC
Q 003091 73 DENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQ--GVVVYEYELKIGWGKSVAL 145 (848)
Q Consensus 73 te~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~ln--G~~i~G~~L~V~~ak~~~~ 145 (848)
....|+.+|..|+.+..+.++ ++-+-..|.|.+.++|.+|...|+ +..+.|..|+|.|+....+
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L---------~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~~ 73 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPL---------KSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTPI 73 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEE---------TTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS-
T ss_pred hHHHHHHHHHhcCCceEEEEc---------CCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccccc
Confidence 347899999999999988877 355667999999999999999999 9999999999999966554
No 130
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=94.73 E-value=0.041 Score=40.85 Aligned_cols=33 Identities=27% Similarity=0.460 Sum_probs=28.6
Q ss_pred hcCChHHHHHHHHHcCccccCChHHHHHHHHhH
Q 003091 513 MNLPLSELERRCRHNGLSLVGGREMMVARLLSL 545 (848)
Q Consensus 513 ~~~~~~~l~~~c~~~gl~~~~~~~~~~~rL~~~ 545 (848)
..|...+|...|+..||...|++.+||+||..+
T Consensus 2 ~~l~v~eLk~~l~~~gL~~~G~K~~Li~Rl~~~ 34 (35)
T PF02037_consen 2 SKLTVAELKEELKERGLSTSGKKAELIERLKEH 34 (35)
T ss_dssp TTSHHHHHHHHHHHTTS-STSSHHHHHHHHHHH
T ss_pred CcCcHHHHHHHHHHCCCCCCCCHHHHHHHHHHh
Confidence 456678999999999999999999999999754
No 131
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=94.48 E-value=0.074 Score=61.06 Aligned_cols=63 Identities=22% Similarity=0.287 Sum_probs=58.1
Q ss_pred CccEEEEecCCCCCCHHHHHHHhc-cCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHH
Q 003091 59 QTTNLYVGNLSPQVDENFLLRTFG-RFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDE 124 (848)
Q Consensus 59 ~~t~LfVgNLp~~vte~~L~~~F~-~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~ 124 (848)
...|||||+||--++.++|..+|. -||.|..|-|= +|.+-+..+|-|=|+|.+..+-.+||.+
T Consensus 369 prrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGID---tD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 369 PRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGID---TDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred ccceEEecCCCCcchHHHHHHHHHHhcCceEEEEec---cCcccCCCCCcceeeecccHHHHHHHhh
Confidence 357999999999999999999998 89999999998 6888889999999999999999999875
No 132
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=94.17 E-value=0.041 Score=61.37 Aligned_cols=73 Identities=25% Similarity=0.313 Sum_probs=58.6
Q ss_pred EEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCce-ecCeEEEEEec
Q 003091 62 NLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVV-VYEYELKIGWG 140 (848)
Q Consensus 62 ~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~-i~G~~L~V~~a 140 (848)
.||+|||.+.++..+|..+|+..-.-.+-.++ -..||+||.+.+...|.+|+..++|+. +.|+++.|.+.
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~~g~fl---------~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~s 73 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQFL---------VKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHS 73 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCCCccee---------eecceeeccCCchhhhhhhHHhhchhhhhcCceeeccch
Confidence 68999999999999999999854221222222 145899999999999999999999976 89999999876
Q ss_pred cCC
Q 003091 141 KSV 143 (848)
Q Consensus 141 k~~ 143 (848)
-++
T Consensus 74 v~k 76 (584)
T KOG2193|consen 74 VPK 76 (584)
T ss_pred hhH
Confidence 544
No 133
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=94.16 E-value=0.019 Score=62.10 Aligned_cols=14 Identities=7% Similarity=0.131 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHhcc
Q 003091 354 AGEIVEVLTESLTL 367 (848)
Q Consensus 354 a~eiv~~l~~~l~~ 367 (848)
-.+||+-|.-.+.-
T Consensus 82 yhevideIyyqVkH 95 (453)
T KOG2888|consen 82 YHEVIDEIYYQVKH 95 (453)
T ss_pred HHHHHHHHHHHHhc
Confidence 56777777766643
No 134
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=93.93 E-value=0.072 Score=62.74 Aligned_cols=72 Identities=21% Similarity=0.286 Sum_probs=63.1
Q ss_pred CCCCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEE
Q 003091 56 GDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYEL 135 (848)
Q Consensus 56 ~d~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L 135 (848)
.-+..-++||||+...+..+.+..+...||.|.+++.. -|||+.|..+..+.+|+..++-..++|..+
T Consensus 36 ~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~------------~fgf~~f~~~~~~~ra~r~~t~~~~~~~kl 103 (668)
T KOG2253|consen 36 PLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRD------------KFGFCEFLKHIGDLRASRLLTELNIDDQKL 103 (668)
T ss_pred CCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhh------------hhcccchhhHHHHHHHHHHhcccCCCcchh
Confidence 34556789999999999999999999999999988776 299999999999999999999999988887
Q ss_pred EEEe
Q 003091 136 KIGW 139 (848)
Q Consensus 136 ~V~~ 139 (848)
.+.-
T Consensus 104 ~~~~ 107 (668)
T KOG2253|consen 104 IENV 107 (668)
T ss_pred hccc
Confidence 6643
No 135
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=93.83 E-value=0.1 Score=38.71 Aligned_cols=33 Identities=36% Similarity=0.534 Sum_probs=29.6
Q ss_pred hcCChHHHHHHHHHcCccccCChHHHHHHHHhH
Q 003091 513 MNLPLSELERRCRHNGLSLVGGREMMVARLLSL 545 (848)
Q Consensus 513 ~~~~~~~l~~~c~~~gl~~~~~~~~~~~rL~~~ 545 (848)
..+..++|...|+..||...|.+..|++||..+
T Consensus 2 ~~l~~~~Lk~~l~~~gl~~~G~K~~Lv~Rl~~~ 34 (35)
T smart00513 2 AKLKVSELKDELKKRGLSTSGTKAELVDRLLEA 34 (35)
T ss_pred CcCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHh
Confidence 356789999999999999999999999999764
No 136
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=93.36 E-value=0.34 Score=53.79 Aligned_cols=76 Identities=14% Similarity=0.180 Sum_probs=62.2
Q ss_pred ccEEEEecCCCCCCHHHHHHHhccCCC-eeE--EEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEE
Q 003091 60 TTNLYVGNLSPQVDENFLLRTFGRFGP-IAS--VKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 136 (848)
Q Consensus 60 ~t~LfVgNLp~~vte~~L~~~F~~fG~-I~s--vkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~ 136 (848)
.-.|-+.+||+..+.++|..+|+.|.. |.. |.++. ...|+..|-|||.|.+.++|.+|....+.+...++.|.
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~----N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiE 355 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVL----NGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIE 355 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEE----cCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEE
Confidence 446889999999999999999999874 433 66662 44678889999999999999999888888877788888
Q ss_pred EEe
Q 003091 137 IGW 139 (848)
Q Consensus 137 V~~ 139 (848)
|--
T Consensus 356 vfp 358 (508)
T KOG1365|consen 356 VFP 358 (508)
T ss_pred Eee
Confidence 743
No 137
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=93.26 E-value=0.029 Score=60.65 Aligned_cols=9 Identities=33% Similarity=0.493 Sum_probs=4.3
Q ss_pred CCChhhhhh
Q 003091 615 TPQPEIKAF 623 (848)
Q Consensus 615 ~~~~~~~~~ 623 (848)
||+|+-++.
T Consensus 221 IPVPvqkqI 229 (453)
T KOG2888|consen 221 IPVPVQKQI 229 (453)
T ss_pred CCchHHHHH
Confidence 455544543
No 138
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=93.11 E-value=0.39 Score=47.17 Aligned_cols=53 Identities=26% Similarity=0.414 Sum_probs=45.1
Q ss_pred HHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEec
Q 003091 76 FLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWG 140 (848)
Q Consensus 76 ~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V~~a 140 (848)
.|.+.|..||.+.-|+++- +.-+|+|.+-..|.+|+ .|+|..++|+.|+|..-
T Consensus 52 ~ll~~~~~~GevvLvRfv~-----------~~mwVTF~dg~sALaal-s~dg~~v~g~~l~i~LK 104 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVG-----------DTMWVTFRDGQSALAAL-SLDGIQVNGRTLKIRLK 104 (146)
T ss_dssp HHHHHHHCCS-ECEEEEET-----------TCEEEEESSCHHHHHHH-HGCCSEETTEEEEEEE-
T ss_pred HHHHHHHhCCceEEEEEeC-----------CeEEEEECccHHHHHHH-ccCCcEECCEEEEEEeC
Confidence 6778899999999998882 45799999999999997 59999999999999763
No 139
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=93.09 E-value=0.02 Score=67.20 Aligned_cols=66 Identities=23% Similarity=0.365 Sum_probs=54.2
Q ss_pred CcccCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHhh
Q 003091 657 GLSYSSSGSENAGDGPSKADDVDFTIDASIPVQPDSGMNEEQRQKLRRLEVSLIEYRESLEERGIKSSEEIEKKVAIHRK 736 (848)
Q Consensus 657 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~kl~~~~~~~~~~r~~~ee~~~~~~ee~~~~~~~~r~ 736 (848)
||+|+.||+||+||+ ..+.+|.|+||++ ++-+| ...|.+|.++++.|. +.+.-|+..-++..|+
T Consensus 25 GL~IPdGgVHIIGGe-~GeaFI~FsTDeD----ARlaM-~kdr~~i~g~~VrLl----------LSSksEmq~vIe~~rk 88 (944)
T KOG4307|consen 25 GLKIPDGGVHIIGGE-EGEAFIGFSTDED----ARLAM-TKDRLMIHGAEVRLL----------LSSKSEMQSVIEARRK 88 (944)
T ss_pred ccccCCCceEEeccc-ccceEEEecccch----hhhhh-hhcccceecceEEEE----------eccHHHHHHHHHHHHH
Confidence 899999999999999 5568999999999 77788 778999999888876 6666777777776665
Q ss_pred hh
Q 003091 737 RL 738 (848)
Q Consensus 737 ~~ 738 (848)
+-
T Consensus 89 aa 90 (944)
T KOG4307|consen 89 AA 90 (944)
T ss_pred HH
Confidence 53
No 140
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=93.00 E-value=0.21 Score=52.93 Aligned_cols=63 Identities=27% Similarity=0.490 Sum_probs=53.8
Q ss_pred cEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCC
Q 003091 61 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQG 127 (848)
Q Consensus 61 t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG 127 (848)
..|||.||+..++-+.|...|..||+|....++- ...++..+-++|.|.+.-.|..|...++-
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~v----D~r~k~t~eg~v~~~~k~~a~~a~rr~~~ 94 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKV----DDRGKPTREGIVEFAKKPNARKAARRCRE 94 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeee----cccccccccchhhhhcchhHHHHHHHhcc
Confidence 6899999999999999999999999998765552 33567778899999999999999887743
No 141
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=92.94 E-value=0.12 Score=62.41 Aligned_cols=78 Identities=10% Similarity=0.077 Sum_probs=68.8
Q ss_pred cEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEec
Q 003091 61 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWG 140 (848)
Q Consensus 61 t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V~~a 140 (848)
..|||.|+|+..|.+.|+.+|.++|.++++.++ ....|+.+|.+||.|.+..+|..++..+++..+.-+.+.|..+
T Consensus 737 ~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~v----t~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vs 812 (881)
T KOG0128|consen 737 ISVAISGPPFQGTKEELKSLASKTGNVTSLRLV----TVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVS 812 (881)
T ss_pred hhhheeCCCCCCchHHHHhhccccCCccccchh----hhhccccccceeccCCCcchhhhhcccchhhhhhhcCcccccc
Confidence 469999999999999999999999999999876 3446889999999999999999999999988888777777765
Q ss_pred cC
Q 003091 141 KS 142 (848)
Q Consensus 141 k~ 142 (848)
.+
T Consensus 813 np 814 (881)
T KOG0128|consen 813 NP 814 (881)
T ss_pred CC
Confidence 55
No 142
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=92.92 E-value=0.38 Score=46.82 Aligned_cols=75 Identities=20% Similarity=0.352 Sum_probs=59.9
Q ss_pred CCCCccEEEEecCCCCCCH-HH---HHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceec
Q 003091 56 GDPQTTNLYVGNLSPQVDE-NF---LLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVY 131 (848)
Q Consensus 56 ~d~~~t~LfVgNLp~~vte-~~---L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~ 131 (848)
.+|.-.+|.|.-|..++.. ++ +..-.+.||+|.+|... ++..|.|.|.+..+|=.|+.+++. ...
T Consensus 82 kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c----------GrqsavVvF~d~~SAC~Av~Af~s-~~p 150 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC----------GRQSAVVVFKDITSACKAVSAFQS-RAP 150 (166)
T ss_pred CCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec----------CCceEEEEehhhHHHHHHHHhhcC-CCC
Confidence 3566678999888777765 33 44556899999999876 567899999999999999999986 667
Q ss_pred CeEEEEEecc
Q 003091 132 EYELKIGWGK 141 (848)
Q Consensus 132 G~~L~V~~ak 141 (848)
|.-+.+.|-.
T Consensus 151 gtm~qCsWqq 160 (166)
T PF15023_consen 151 GTMFQCSWQQ 160 (166)
T ss_pred CceEEeeccc
Confidence 8888998854
No 143
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=92.59 E-value=0.5 Score=42.04 Aligned_cols=58 Identities=19% Similarity=0.392 Sum_probs=41.9
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcC
Q 003091 58 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQ 126 (848)
Q Consensus 58 ~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~ln 126 (848)
|....||--..|......+|.++|+.||.| .|..+ .-..|||...+++.|..|+..+.
T Consensus 6 P~RdHVFhltFPkeWK~~DI~qlFspfG~I-~VsWi----------~dTSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 6 PSRDHVFHLTFPKEWKTSDIYQLFSPFGQI-YVSWI----------NDTSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp -SGCCEEEEE--TT--HHHHHHHCCCCCCE-EEEEE----------CTTEEEEEECCCHHHHHHHHHHT
T ss_pred CCcceEEEEeCchHhhhhhHHHHhccCCcE-EEEEE----------cCCcEEEEeecHHHHHHHHHHhc
Confidence 334455555599999999999999999986 35555 33679999999999999988775
No 144
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=92.31 E-value=0.31 Score=52.38 Aligned_cols=62 Identities=13% Similarity=0.100 Sum_probs=48.2
Q ss_pred HHHHHHhccCCCeeEEEEeCCCcccccCCc-ccEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEe
Q 003091 75 NFLLRTFGRFGPIASVKIMWPRTEEERRRQ-RNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 139 (848)
Q Consensus 75 ~~L~~~F~~fG~I~svkI~~pr~d~~tg~~-rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V~~ 139 (848)
+++.+.+.+||.|..|-|.- .+..-.. .---||+|...++|.+|+-.|||..++|+.+...|
T Consensus 301 de~keEceKyg~V~~viife---ip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~F 363 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFE---IPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACF 363 (378)
T ss_pred HHHHHHHHhhcceeeEEEEe---cCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeehee
Confidence 45667789999999987763 2111111 23469999999999999999999999999988776
No 145
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=91.74 E-value=0.077 Score=58.18 Aligned_cols=82 Identities=18% Similarity=0.309 Sum_probs=61.1
Q ss_pred cEEEEecCCCCCCHHHHH---HHhccCCCeeEEEEeCCCcccccCC-cccEEEEEeCCHHHHHHHHHHcCCceecCeEEE
Q 003091 61 TNLYVGNLSPQVDENFLL---RTFGRFGPIASVKIMWPRTEEERRR-QRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 136 (848)
Q Consensus 61 t~LfVgNLp~~vte~~L~---~~F~~fG~I~svkI~~pr~d~~tg~-~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~ 136 (848)
.-+||-+|+..+..+.+. +.|++||.|.+|.+-.... ...+. +..-++|+|...++|..||...+|+.++|+.|+
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S-~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPS-SSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcc-cccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 457888999877655443 5799999999997763110 01111 122379999999999999999999999999998
Q ss_pred EEeccCC
Q 003091 137 IGWGKSV 143 (848)
Q Consensus 137 V~~ak~~ 143 (848)
..++...
T Consensus 157 a~~gttk 163 (327)
T KOG2068|consen 157 ASLGTTK 163 (327)
T ss_pred HhhCCCc
Confidence 8887644
No 146
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=90.84 E-value=0.34 Score=56.29 Aligned_cols=8 Identities=38% Similarity=0.787 Sum_probs=4.3
Q ss_pred ceeeEEee
Q 003091 251 TYYVWRLY 258 (848)
Q Consensus 251 ~YYrwkl~ 258 (848)
.||.||+-
T Consensus 3 ~~~~~~~~ 10 (757)
T KOG4368|consen 3 SYYKCKLA 10 (757)
T ss_pred cccccccc
Confidence 45555554
No 147
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=90.11 E-value=1.2 Score=41.89 Aligned_cols=99 Identities=13% Similarity=0.221 Sum_probs=66.9
Q ss_pred CHHHHHHHHHHHHhccccHHHHHHHHHHHhcccCCCcccchheeeeehhhhccCCCCCCCccchHHHHHHhhHHHHHHHH
Q 003091 336 ERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTKFEATLPDIMESFN 415 (848)
Q Consensus 336 tr~sI~~~~~w~l~h~~~a~eiv~~l~~~l~~~~~~~~~KL~~LYLinDIL~ns~~~~~~a~~yr~~fe~~Lp~if~~l~ 415 (848)
....|......+-+....+.+++..|.+.|... ....++--|+|+-=++.||.. .|...|....-. ...+.
T Consensus 17 ~~~~i~~i~d~~~~~~~~~~~~~~~l~kRl~~~--~~~~~lkaL~lLe~lvkN~g~------~f~~~i~~~~~~-~~l~~ 87 (115)
T cd00197 17 DWPLIMEICDLINETNVGPKEAVDAIKKRINNK--NPHVVLKALTLLEYCVKNCGE------RFHQEVASNDFA-VELLK 87 (115)
T ss_pred CHHHHHHHHHHHHCCCccHHHHHHHHHHHhcCC--cHHHHHHHHHHHHHHHHHccH------HHHHHHHHhHHH-HHHHH
Confidence 445555555555455566889999999999654 577888899999999999973 344444443321 11122
Q ss_pred HHHhhhhcccchHHHHHHHHHHHHhhcc
Q 003091 416 DLYRSITGRITAEALKERVLKVLQVWSD 443 (848)
Q Consensus 416 ~~~~~~~~r~~ae~~k~kV~~vL~iWe~ 443 (848)
..+....|.......++++..|+..|.+
T Consensus 88 ~~~~~~~~~~~~~~Vr~k~~~l~~~w~~ 115 (115)
T cd00197 88 FDKSKLLGDDVSTNVREKAIELVQLWAS 115 (115)
T ss_pred hhccccccCCCChHHHHHHHHHHHHHhC
Confidence 1233445666678999999999999963
No 148
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=89.83 E-value=0.15 Score=54.02 Aligned_cols=61 Identities=11% Similarity=0.176 Sum_probs=48.1
Q ss_pred HHHHHhc-cCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEec
Q 003091 76 FLLRTFG-RFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWG 140 (848)
Q Consensus 76 ~L~~~F~-~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V~~a 140 (848)
+|...|+ +||.|..++|-. .-.-.-.|-.+|.|...++|++|+..|||-.+.|++|...+.
T Consensus 84 d~f~E~~~kygEiee~~Vc~----Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCD----NLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhc----ccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 3444445 999999987652 222234577899999999999999999999999999999874
No 149
>KOG1847 consensus mRNA splicing factor [RNA processing and modification]
Probab=89.74 E-value=0.17 Score=59.11 Aligned_cols=59 Identities=22% Similarity=0.098 Sum_probs=50.1
Q ss_pred cccCCCCchhhhhHHHHHHHHHhhccHHHHHHHHHhcCCCCcccccccCCCCCcceeeEEee
Q 003091 197 IMVIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLY 258 (848)
Q Consensus 197 i~v~~P~d~~~~~~Id~~a~~V~~~G~~FE~~l~~~e~~np~f~FL~d~~s~~h~YYrwkl~ 258 (848)
|..++|..+.+.-+|+..|+||+++|..||.-+.. .++-+|-|+- ++.+|+.||-++..
T Consensus 416 v~~~ip~~pd~~p~v~~~aE~Vaq~Gl~~e~S~~a--~~d~~~~f~~-pk~~y~~yy~~kk~ 474 (878)
T KOG1847|consen 416 VLQEIPELPDGDPGVIIRAEDVAQEGLAVEDSKHA--FGDVLPDFSA-PKEKYKMYYDKKKV 474 (878)
T ss_pred hhhhCCCCCCCchHHHHHHHHHHhhchhhhhhhhh--hcccChhhcc-chhhhhhhhhhhhh
Confidence 33456667788999999999999999999999887 4688888886 88999999998874
No 150
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=89.16 E-value=0.44 Score=57.67 Aligned_cols=77 Identities=18% Similarity=0.236 Sum_probs=65.9
Q ss_pred cEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCcee--cCeEEEEE
Q 003091 61 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVV--YEYELKIG 138 (848)
Q Consensus 61 t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i--~G~~L~V~ 138 (848)
.+.++.|.+.+.+-..|..+|+.||.|.++..++ .-+.|.|+|...+.|..|+++++|+.+ -|-+.+|.
T Consensus 299 p~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr---------~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~ 369 (1007)
T KOG4574|consen 299 PKQSLENNAVNLTSSSLATLCSDYGSVASAWTLR---------DLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVS 369 (1007)
T ss_pred chhhhhcccccchHHHHHHHHHhhcchhhheecc---------cccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEE
Confidence 3456667777888899999999999999987773 557899999999999999999999985 68889999
Q ss_pred eccCCCCC
Q 003091 139 WGKSVALP 146 (848)
Q Consensus 139 ~ak~~~~p 146 (848)
||+..++-
T Consensus 370 ~ak~~~~~ 377 (1007)
T KOG4574|consen 370 FAKTLPMY 377 (1007)
T ss_pred eccccccc
Confidence 99987653
No 151
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=89.10 E-value=0.04 Score=66.42 Aligned_cols=68 Identities=26% Similarity=0.402 Sum_probs=58.4
Q ss_pred cEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceec
Q 003091 61 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVY 131 (848)
Q Consensus 61 t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~ 131 (848)
+++||.||++.+.+.+|...|+.+|.|..|.|. ....+++.+|.|+|.|.....+.+||....+..++
T Consensus 668 ~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~---~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 668 IKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIV---IHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred HHHHHhhcchhhcCchhhhhcCccchhhhHHHH---HHhhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 579999999999999999999999998888766 34567889999999999999999999766655444
No 152
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=88.64 E-value=0.2 Score=60.18 Aligned_cols=12 Identities=33% Similarity=0.556 Sum_probs=8.5
Q ss_pred hccCCCCcccCC
Q 003091 651 RSSRGLGLSYSS 662 (848)
Q Consensus 651 ~~~~~~~~~~~~ 662 (848)
.++.|+|.+.+-
T Consensus 252 ~s~~~~g~~lp~ 263 (1194)
T KOG4246|consen 252 SSNPGYGVSLPP 263 (1194)
T ss_pred hcCCCcCCCCCC
Confidence 566678877775
No 153
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=87.69 E-value=1 Score=53.13 Aligned_cols=104 Identities=20% Similarity=0.358 Sum_probs=84.3
Q ss_pred HHHHHHHHHhcc-cCHHHHHHHHHHHHhccccHHHHHHHHHHHhcccCCCcccchheeeeehhhhccCCCCCCCccchHH
Q 003091 323 RDEFEDMLRALT-LERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRT 401 (848)
Q Consensus 323 ~~~l~~lL~~Lt-~tr~sI~~~~~w~l~h~~~a~eiv~~l~~~l~~~~~~~~~KL~~LYLinDIL~ns~~~~~~a~~yr~ 401 (848)
-..+...|..|| .++.-|-.+..-+-++..+|..||+.|-..+.. +|...||-.+||+--|+-|-..+ |..
T Consensus 6 ~~dy~s~ledltfnskp~i~~lt~la~En~~~a~~iv~~iE~hi~k--cpp~~kL~~~y~~dsi~knvg~p------y~~ 77 (579)
T KOG2071|consen 6 CRDYQSSLEDLTFNSKPIINTLTILAEENLPFAKSIVSAIEAHIAK--CPPSQKLPVMYLLDSIVKNVGSP------YTT 77 (579)
T ss_pred HHHHHHHHHHHhcCCcchhHHhhHhhhhcccccHHHHHHHHHHHhh--CCcccccchhhhhHHHHhhcCCc------chh
Confidence 345677788884 789999999999999999999999999999854 56789999999999999887533 888
Q ss_pred HHHHhhHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHhhc
Q 003091 402 KFEATLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWS 442 (848)
Q Consensus 402 ~fe~~Lp~if~~l~~~~~~~~~r~~ae~~k~kV~~vL~iWe 442 (848)
.|...|...|.+ +|.. .++-.+.++.+++..|.
T Consensus 78 ~fs~~l~a~f~~---~~~~-----vd~r~r~~l~~~~~tw~ 110 (579)
T KOG2071|consen 78 AFSRNLVATFIC---AFTK-----VDERTRTSLFKLRATWD 110 (579)
T ss_pred hhhhhHHHHHHH---HHhh-----ccccccchhHhhHHhhc
Confidence 999888877743 3333 34556889999999998
No 154
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=87.11 E-value=3.5 Score=45.46 Aligned_cols=20 Identities=10% Similarity=0.129 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHhccCC
Q 003091 704 RLEVSLIEYRESLEERGIKS 723 (848)
Q Consensus 704 ~~~~~~~~~r~~~ee~~~~~ 723 (848)
-|+..+...+..+.+.+.+-
T Consensus 238 li~~~vd~~k~~~~da~~k~ 257 (367)
T KOG0835|consen 238 LIEAFVDRLKRKFSDASGKA 257 (367)
T ss_pred HHHHHHHHhhHHHHhccCCc
Confidence 45666666666666665543
No 155
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=86.84 E-value=0.52 Score=53.79 Aligned_cols=75 Identities=20% Similarity=0.303 Sum_probs=58.8
Q ss_pred ccEEEEecCCCCCC-HHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEEE
Q 003091 60 TTNLYVGNLSPQVD-ENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 138 (848)
Q Consensus 60 ~t~LfVgNLp~~vt-e~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V~ 138 (848)
.+.|-+--.++..+ -++|..+|.+||.|..|.|-+ +.--|.|+|.+..+|-.|. ...|..|+++.|+|-
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~---------~~~~a~vTF~t~aeag~a~-~s~~avlnnr~iKl~ 441 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDY---------SSLHAVVTFKTRAEAGEAY-ASHGAVLNNRFIKLF 441 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhcCccccccccC---------chhhheeeeeccccccchh-ccccceecCceeEEE
Confidence 44455555555554 478999999999999998874 2346899999999996663 588999999999999
Q ss_pred eccCCC
Q 003091 139 WGKSVA 144 (848)
Q Consensus 139 ~ak~~~ 144 (848)
|-.+.+
T Consensus 442 whnps~ 447 (526)
T KOG2135|consen 442 WHNPSP 447 (526)
T ss_pred EecCCc
Confidence 987644
No 156
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=86.60 E-value=2.9 Score=45.53 Aligned_cols=64 Identities=19% Similarity=0.237 Sum_probs=48.9
Q ss_pred cEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEE
Q 003091 61 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYEL 135 (848)
Q Consensus 61 t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L 135 (848)
+=|-|-+.|+.-.- .|..+|.+||.|.+... +.+.++-+|-|.++.+|.+||. .||+.|+|..|
T Consensus 198 ~WVTVfGFppg~~s-~vL~~F~~cG~Vvkhv~---------~~ngNwMhirYssr~~A~KALs-kng~ii~g~vm 261 (350)
T KOG4285|consen 198 TWVTVFGFPPGQVS-IVLNLFSRCGEVVKHVT---------PSNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVM 261 (350)
T ss_pred ceEEEeccCccchh-HHHHHHHhhCeeeeeec---------CCCCceEEEEecchhHHHHhhh-hcCeeeccceE
Confidence 44566677776554 45668999999877532 2456799999999999999985 78999988653
No 157
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=83.94 E-value=3.4 Score=42.21 Aligned_cols=87 Identities=14% Similarity=0.228 Sum_probs=53.1
Q ss_pred CccEEEEecCCCCCCHHHHHHHhcc-CCCe---eEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceec---
Q 003091 59 QTTNLYVGNLSPQVDENFLLRTFGR-FGPI---ASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVY--- 131 (848)
Q Consensus 59 ~~t~LfVgNLp~~vte~~L~~~F~~-fG~I---~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~--- 131 (848)
..+.|.|.+||+++|++++.+.++. ++.- ..+.-..+. .........-|+|.|.+.+++..-+..++|..+.
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~-~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGK-KSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES--SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCC-ccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 4569999999999999999998877 6665 333311111 1111112346899999999999999999998872
Q ss_pred C--eEEEEEeccCCCCC
Q 003091 132 E--YELKIGWGKSVALP 146 (848)
Q Consensus 132 G--~~L~V~~ak~~~~p 146 (848)
| ....|.||-...+|
T Consensus 85 g~~~~~~VE~Apyqk~p 101 (176)
T PF03467_consen 85 GNEYPAVVEFAPYQKVP 101 (176)
T ss_dssp S-EEEEEEEE-SS----
T ss_pred CCCcceeEEEcchhccc
Confidence 2 45678887665554
No 158
>KOG2548 consensus SWAP mRNA splicing regulator [RNA processing and modification]
Probab=82.44 E-value=6.4 Score=45.74 Aligned_cols=12 Identities=17% Similarity=0.354 Sum_probs=6.0
Q ss_pred HHHHHHhHHHHh
Q 003091 538 MVARLLSLEDAE 549 (848)
Q Consensus 538 ~~~rL~~~~~~~ 549 (848)
...+.|.||.|.
T Consensus 105 e~Er~vnfERYR 116 (653)
T KOG2548|consen 105 ELERFVNFERYR 116 (653)
T ss_pred HHHHHhhHHHHH
Confidence 344555555554
No 159
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=82.30 E-value=2.3 Score=46.15 Aligned_cols=17 Identities=18% Similarity=0.606 Sum_probs=8.8
Q ss_pred chHHHHHHHHHHHHhhc
Q 003091 426 TAEALKERVLKVLQVWS 442 (848)
Q Consensus 426 ~ae~~k~kV~~vL~iWe 442 (848)
+.++...++..-|.+|.
T Consensus 73 k~e~~~~~~~~~l~~wd 89 (335)
T KOG0113|consen 73 KTEKIPHKLERRLKLWD 89 (335)
T ss_pred hhhhhHHHHHHHHHhcC
Confidence 34445555555555554
No 160
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=82.04 E-value=5.6 Score=40.50 Aligned_cols=68 Identities=15% Similarity=0.152 Sum_probs=57.0
Q ss_pred ccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCcee--cCeEEEE
Q 003091 60 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVV--YEYELKI 137 (848)
Q Consensus 60 ~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i--~G~~L~V 137 (848)
...|.|.+||++-+.++|+.+.-+.|.|....+.. -++|.|.|...++.+-|+..|+...+ .|....+
T Consensus 115 e~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~r----------Dg~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yi 184 (241)
T KOG0105|consen 115 EYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQR----------DGVGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYI 184 (241)
T ss_pred ceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeec----------ccceeeeeeehhhHHHHHHhhccccccCcCcEeeE
Confidence 34699999999999999999999999998887762 25899999999999999999988765 3444444
No 161
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=78.78 E-value=7.9 Score=32.72 Aligned_cols=54 Identities=7% Similarity=0.167 Sum_probs=41.6
Q ss_pred cEEEEecCCCCCCHHHHHHHhccC---CCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHc
Q 003091 61 TNLYVGNLSPQVDENFLLRTFGRF---GPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEM 125 (848)
Q Consensus 61 t~LfVgNLp~~vte~~L~~~F~~f---G~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~l 125 (848)
..|+|.++. +++.++++.+|..| .....|..+ |. ..|-|.|.+...|.+|+.+|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWI----dD------tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWI----DD------TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEe----cC------CcEEEEECCHHHHHHHHHcC
Confidence 479999996 68888999999988 124566666 22 34679999999999998765
No 162
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=78.53 E-value=3.2 Score=48.51 Aligned_cols=48 Identities=8% Similarity=0.037 Sum_probs=40.4
Q ss_pred cccccCCcccEEEEEeCCHHHHHHHHHHcCCcee----cCeEEEEEeccCCC
Q 003091 97 TEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVV----YEYELKIGWGKSVA 144 (848)
Q Consensus 97 ~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i----~G~~L~V~~ak~~~ 144 (848)
.|-.+..+.|||||.|.+..++..+.+++||+.| ..+.+.|.||+-..
T Consensus 423 iDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~itYArIQG 474 (549)
T KOG4660|consen 423 IDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASITYARIQG 474 (549)
T ss_pred cccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeeehhhhhc
Confidence 4656667889999999999999999999999987 34777889988665
No 163
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=76.88 E-value=4.3 Score=44.81 Aligned_cols=11 Identities=36% Similarity=0.471 Sum_probs=4.6
Q ss_pred hhhhhhhhhhc
Q 003091 618 PEIKAFTKKEK 628 (848)
Q Consensus 618 ~~~~~~~~~~~ 628 (848)
+++.+|.++.+
T Consensus 237 ~li~~~vd~~k 247 (367)
T KOG0835|consen 237 TLIEAFVDRLK 247 (367)
T ss_pred HHHHHHHHHhh
Confidence 34444444433
No 164
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=75.08 E-value=12 Score=32.37 Aligned_cols=67 Identities=10% Similarity=0.184 Sum_probs=39.3
Q ss_pred EEEEe-cCCCCCCHHHHHHHhccCCC-----eeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEE
Q 003091 62 NLYVG-NLSPQVDENFLLRTFGRFGP-----IASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYEL 135 (848)
Q Consensus 62 ~LfVg-NLp~~vte~~L~~~F~~fG~-----I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L 135 (848)
+|||. +--..++..+|..++...+. |-.|.|.. .|.||+-. .+.|..++..|++..+.|+.+
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~-----------~~S~vev~-~~~a~~v~~~l~~~~~~gk~v 69 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFD-----------NFSFVEVP-EEVAEKVLEALNGKKIKGKKV 69 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-S-----------S-EEEEE--TT-HHHHHHHHTT--SSS---
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEee-----------eEEEEEEC-HHHHHHHHHHhcCCCCCCeeE
Confidence 45552 12247888888888876543 56778772 68899886 457889999999999999999
Q ss_pred EEEec
Q 003091 136 KIGWG 140 (848)
Q Consensus 136 ~V~~a 140 (848)
+|..|
T Consensus 70 ~ve~A 74 (74)
T PF03880_consen 70 RVERA 74 (74)
T ss_dssp -EEE-
T ss_pred EEEEC
Confidence 99764
No 165
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=72.72 E-value=7.3 Score=39.64 Aligned_cols=77 Identities=16% Similarity=0.177 Sum_probs=56.0
Q ss_pred ccEEEEecCCCCCCHH-----HHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCe-
Q 003091 60 TTNLYVGNLSPQVDEN-----FLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEY- 133 (848)
Q Consensus 60 ~t~LfVgNLp~~vte~-----~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~- 133 (848)
.+++.+.+++..|-.+ ....+|-+|-......++ ++.++--|.|.++..|..|...+++..+.|.
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~l---------rsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~ 80 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLL---------RSFRRVRINFSNPEAAADARIKLHSTSFNGKN 80 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHH---------HhhceeEEeccChhHHHHHHHHhhhcccCCCc
Confidence 4567888888755432 344566666655444444 3455667899999999999999999999887
Q ss_pred EEEEEeccCCCC
Q 003091 134 ELKIGWGKSVAL 145 (848)
Q Consensus 134 ~L~V~~ak~~~~ 145 (848)
.++.-|+...-.
T Consensus 81 ~~k~yfaQ~~~~ 92 (193)
T KOG4019|consen 81 ELKLYFAQPGHP 92 (193)
T ss_pred eEEEEEccCCCc
Confidence 899999886644
No 166
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=72.31 E-value=9.4 Score=42.86 Aligned_cols=60 Identities=18% Similarity=0.138 Sum_probs=46.0
Q ss_pred cEEEEecCCCCCCHHHHHHHhccCC----CeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHH
Q 003091 61 TNLYVGNLSPQVDENFLLRTFGRFG----PIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDE 124 (848)
Q Consensus 61 t~LfVgNLp~~vte~~L~~~F~~fG----~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~ 124 (848)
-.|-+.+||+++++.++..+|..-- ....|-++ ....|+..|-|||.|...++|+.|+..
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV----~rpdgrpTGdAFvlfa~ee~aq~aL~k 225 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFV----TRPDGRPTGDAFVLFACEEDAQFALRK 225 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEE----ECCCCCcccceEEEecCHHHHHHHHHH
Confidence 4677889999999999999997432 23344444 223467889999999999999999854
No 167
>KOG0796 consensus Spliceosome subunit [RNA processing and modification]
Probab=72.00 E-value=1.7 Score=47.72 Aligned_cols=6 Identities=33% Similarity=0.833 Sum_probs=2.5
Q ss_pred hhhccC
Q 003091 384 DVLHNS 389 (848)
Q Consensus 384 DIL~ns 389 (848)
||+.|+
T Consensus 45 DlF~nT 50 (319)
T KOG0796|consen 45 DLFQNT 50 (319)
T ss_pred HHhhhh
Confidence 444443
No 168
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=71.34 E-value=30 Score=32.62 Aligned_cols=79 Identities=19% Similarity=0.272 Sum_probs=52.1
Q ss_pred ccEEEEecCCCCCC-HHHHHHHhccCC-CeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecC---eE
Q 003091 60 TTNLYVGNLSPQVD-ENFLLRTFGRFG-PIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYE---YE 134 (848)
Q Consensus 60 ~t~LfVgNLp~~vt-e~~L~~~F~~fG-~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G---~~ 134 (848)
+++|.|=-.|+.++ -++|..+.+.+- .|..++|++ +. ..++-.+.+.|.+..+|..-...+||+.++. -.
T Consensus 12 ~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riir---d~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~FnslEpE~ 86 (110)
T PF07576_consen 12 RSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIR---DG--TPNRYMVLIKFRDQESADEFYEEFNGKPFNSLEPET 86 (110)
T ss_pred CceEEEEEeCcccccHHHHHHhhhcccccEEEEEEee---CC--CCceEEEEEEECCHHHHHHHHHHhCCCccCCCCCce
Confidence 34444444555444 456655445554 577888884 22 2356678999999999999999999998753 44
Q ss_pred EEEEeccCC
Q 003091 135 LKIGWGKSV 143 (848)
Q Consensus 135 L~V~~ak~~ 143 (848)
++|-|-+.+
T Consensus 87 ChvvfV~~V 95 (110)
T PF07576_consen 87 CHVVFVKSV 95 (110)
T ss_pred eEEEEEEEE
Confidence 555554443
No 169
>KOG0965 consensus Predicted RNA-binding protein, contains SWAP and G-patch domains [General function prediction only]
Probab=70.66 E-value=1.5 Score=52.70 Aligned_cols=59 Identities=19% Similarity=0.100 Sum_probs=53.5
Q ss_pred CchhhhhHHHHHHHHHhhccHHHHHHHHHhcCCCCcccccccCCCCCcceeeEEeeeec
Q 003091 203 EDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFA 261 (848)
Q Consensus 203 ~d~~~~~~Id~~a~~V~~~G~~FE~~l~~~e~~np~f~FL~d~~s~~h~YYrwkl~s~~ 261 (848)
.-+..+.+|+.++.++.-.+..++-.+|+--+.||.|.||-|.++-++.||+-++-++.
T Consensus 528 ~~a~~rvv~~i~~~~~~~~~~~L~~~~~tl~k~~pa~~Flsd~ns~e~~yyk~k~aeI~ 586 (988)
T KOG0965|consen 528 QRADHRVVGTIDQLVKRVIEGSLSPKERTLLKEDPAYWFLSDENSLEYKYYKLKLAEIQ 586 (988)
T ss_pred cCCCceeeeehhhhHHhhccccccHHHHHHhhhchhhhhhcchhhhHHHHhccccHHHH
Confidence 45567889999999999999999999999999999999999999999999999986544
No 170
>KOG2548 consensus SWAP mRNA splicing regulator [RNA processing and modification]
Probab=68.93 E-value=2.6 Score=48.79 Aligned_cols=25 Identities=16% Similarity=-0.015 Sum_probs=12.6
Q ss_pred CChHHHHHHHHH--cCccccCChHHHH
Q 003091 515 LPLSELERRCRH--NGLSLVGGREMMV 539 (848)
Q Consensus 515 ~~~~~l~~~c~~--~gl~~~~~~~~~~ 539 (848)
|+.++...+.++ ++.+..|.--.|+
T Consensus 207 ld~eq~~tlnkqg~~ygmk~g~fv~ml 233 (653)
T KOG2548|consen 207 LDDEQMETLNKQGEFYGMKYGDFVYML 233 (653)
T ss_pred CCHHHHHHHHhhhhhhccccchHHHHh
Confidence 344444444444 6666666544443
No 171
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.25 E-value=14 Score=43.72 Aligned_cols=82 Identities=26% Similarity=0.287 Sum_probs=60.2
Q ss_pred CCccEEEEecCCC-CCCHHHHHHHhccC----CCeeEEEEeCC-----Ccc--cccCC----------------------
Q 003091 58 PQTTNLYVGNLSP-QVDENFLLRTFGRF----GPIASVKIMWP-----RTE--EERRR---------------------- 103 (848)
Q Consensus 58 ~~~t~LfVgNLp~-~vte~~L~~~F~~f----G~I~svkI~~p-----r~d--~~tg~---------------------- 103 (848)
-.+..|-|.||.+ .|...+|..+|..| |.|.+|+|..- |+. ...|.
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~ 251 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEE 251 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhh
Confidence 3467899999998 67778999998765 48999998730 100 01121
Q ss_pred ---------------cccEEEEEeCCHHHHHHHHHHcCCceec--CeEEEEEe
Q 003091 104 ---------------QRNCGFVAFMNRADGQAAKDEMQGVVVY--EYELKIGW 139 (848)
Q Consensus 104 ---------------~rg~gFV~F~~~~~A~~Ai~~lnG~~i~--G~~L~V~~ 139 (848)
..-||.|+|.+...|.+....++|..+. |..|-+.|
T Consensus 252 ~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 252 DVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRF 304 (650)
T ss_pred hHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeee
Confidence 2247999999999999999999999985 45555555
No 172
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=67.54 E-value=0.92 Score=51.03 Aligned_cols=74 Identities=18% Similarity=0.350 Sum_probs=62.9
Q ss_pred ccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEe
Q 003091 60 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 139 (848)
Q Consensus 60 ~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V~~ 139 (848)
+..+-|.|+|+....+.|..+.+.||.+..|..+. ++.++. .--|+|...+.+..||..+||..+....++|+|
T Consensus 80 srk~Qirnippql~wevld~Ll~qyg~ve~~eqvn--t~~eta----vvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~Y 153 (584)
T KOG2193|consen 80 SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVN--TDSETA----VVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGY 153 (584)
T ss_pred hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhc--cchHHH----HHHHHHHHHHHHHHHHHhhcchHhhhhhhhccc
Confidence 34688999999999999999999999999986553 454433 235789999999999999999999999999988
No 173
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=60.32 E-value=5.6 Score=43.78 Aligned_cols=83 Identities=16% Similarity=0.082 Sum_probs=65.7
Q ss_pred CccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEEE
Q 003091 59 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 138 (848)
Q Consensus 59 ~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V~ 138 (848)
..+++|+|++...+.+.....+|..+|.+..+.+.. ......+++++.|.|...+.+..|+.......+.+..+...
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~---~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~d 163 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSS---LEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKD 163 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhh---hccccccccceeeccccHHHHHHHHHhhhccccccccccCc
Confidence 467899999999999999999999999877665542 44567789999999999999999987655567777776666
Q ss_pred eccCCC
Q 003091 139 WGKSVA 144 (848)
Q Consensus 139 ~ak~~~ 144 (848)
+.....
T Consensus 164 l~~~~~ 169 (285)
T KOG4210|consen 164 LNTRRG 169 (285)
T ss_pred cccccc
Confidence 555443
No 174
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=59.28 E-value=39 Score=28.95 Aligned_cols=55 Identities=9% Similarity=0.278 Sum_probs=42.9
Q ss_pred CCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEE
Q 003091 71 QVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 137 (848)
Q Consensus 71 ~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V 137 (848)
.++-.+++.-+.+|+- .. |.. + ..|| ||.|.+..+|+++....+|..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~--I~~---d-----~tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DR--IRD---D-----RTGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-ce--EEe---c-----CCEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 5677889999999974 23 331 1 1233 89999999999999999999999988765
No 175
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=58.33 E-value=23 Score=40.84 Aligned_cols=69 Identities=20% Similarity=0.288 Sum_probs=57.7
Q ss_pred CccEEEEecCCCCCCHHHHHHHhccCC-CeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecC
Q 003091 59 QTTNLYVGNLSPQVDENFLLRTFGRFG-PIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYE 132 (848)
Q Consensus 59 ~~t~LfVgNLp~~vte~~L~~~F~~fG-~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G 132 (848)
.++.|+|-.+|..++-.+|..+...|- .|.+++|++ |. -.++-...|.|.+..+|..-...+||+.+..
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivR---d~--~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVR---DG--MPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEee---cC--CCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 378999999999999999999988665 588999995 22 1244568999999999999999999998753
No 176
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=57.24 E-value=21 Score=41.99 Aligned_cols=70 Identities=10% Similarity=0.119 Sum_probs=55.0
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhc--cCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCC--ceecCe
Q 003091 58 PQTTNLYVGNLSPQVDENFLLRTFG--RFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQG--VVVYEY 133 (848)
Q Consensus 58 ~~~t~LfVgNLp~~vte~~L~~~F~--~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG--~~i~G~ 133 (848)
...|.|.+.-||.++-.++++.||. .|.++.+|.+-. +-+ =||+|++..+|+.|...|.. +.|.|+
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~---------N~n-WyITfesd~DAQqAykylreevk~fqgK 242 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAH---------NDN-WYITFESDTDAQQAYKYLREEVKTFQGK 242 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeee---------cCc-eEEEeecchhHHHHHHHHHHHHHhhcCc
Confidence 4457789999999999999999996 588888988762 222 38999999999999877664 446676
Q ss_pred EEEE
Q 003091 134 ELKI 137 (848)
Q Consensus 134 ~L~V 137 (848)
+|..
T Consensus 243 pImA 246 (684)
T KOG2591|consen 243 PIMA 246 (684)
T ss_pred chhh
Confidence 6644
No 177
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=55.69 E-value=22 Score=43.48 Aligned_cols=46 Identities=15% Similarity=0.326 Sum_probs=26.2
Q ss_pred CCCHHHHHHHHHHHHhcccCHHHHHHHHHHHHhcccc--HHHHHHHHHHHh
Q 003091 317 TLTDSQRDEFEDMLRALTLERSQIKEAMGFALDNADA--AGEIVEVLTESL 365 (848)
Q Consensus 317 ~L~~~~~~~l~~lL~~Lt~tr~sI~~~~~w~l~h~~~--a~eiv~~l~~~l 365 (848)
.|.+.-...|.-+|-++...-+.|..|. |+.-+. +..+.+-|++++
T Consensus 695 ilDsKtaQnLsIflgS~rmpyeeik~~I---Levne~vLse~~iqnLik~l 742 (1102)
T KOG1924|consen 695 ILDSKTAQNLSIFLGSFRMPYEEIKNVI---LEVNEDVLSESMIQNLIKHL 742 (1102)
T ss_pred ecchHHHHHHHHHHhhccCCHHHHHHHH---hhccHHHHHHHHHHHHHHhC
Confidence 3555555567777777777777776643 322222 455555555554
No 178
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=54.21 E-value=30 Score=32.97 Aligned_cols=98 Identities=17% Similarity=0.237 Sum_probs=60.9
Q ss_pred CHHHHHHHHHHHHhccccHHHHHHHHHHHh-cccCCCcccchheeeeehhhhccCCCCCCCccchHHHHHHhhHHHHHHH
Q 003091 336 ERSQIKEAMGFALDNADAAGEIVEVLTESL-TLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTKFEATLPDIMESF 414 (848)
Q Consensus 336 tr~sI~~~~~w~l~h~~~a~eiv~~l~~~l-~~~~~~~~~KL~~LYLinDIL~ns~~~~~~a~~yr~~fe~~Lp~if~~l 414 (848)
+-.-.......+.+. ..+..|+++|.+.| .........++--|.||.-+|.|+. ..|...|...+..|..-.
T Consensus 20 ~~~~l~eIa~~t~~~-~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~------~~~~~~~~~~~~~I~~l~ 92 (125)
T PF01417_consen 20 PGKLLAEIAQLTYNS-KDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGS------ERFVDELRDHIDIIRELQ 92 (125)
T ss_dssp -HHHHHHHHHHTTSC-HHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-------HHHHHHHHHTHHHHHGGG
T ss_pred CHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCC------HHHHHHHHHHHHHHhhcc
Confidence 333344444455454 77889999999999 4444456677888999999999986 246666655555443221
Q ss_pred HHHHhhhhcccchHHHHHHHHHHHHh
Q 003091 415 NDLYRSITGRITAEALKERVLKVLQV 440 (848)
Q Consensus 415 ~~~~~~~~~r~~ae~~k~kV~~vL~i 440 (848)
...|-...|......++++...|+.+
T Consensus 93 ~f~~~d~~g~d~~~~VR~~A~~i~~l 118 (125)
T PF01417_consen 93 DFQYVDPKGKDQGQNVREKAKEILEL 118 (125)
T ss_dssp G---BBTTSTBHHHHHHHHHHHHHHH
T ss_pred eeeccCCCCccHHHHHHHHHHHHHHH
Confidence 11121113455556788888888887
No 179
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=47.15 E-value=4.9 Score=41.98 Aligned_cols=69 Identities=35% Similarity=0.527 Sum_probs=56.4
Q ss_pred CCCCccEEEEec----CCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCc
Q 003091 56 GDPQTTNLYVGN----LSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGV 128 (848)
Q Consensus 56 ~d~~~t~LfVgN----Lp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~ 128 (848)
.++.-.+++.|| |...++++.+..+|+..|++..+++.. +. .|++++++||.+....+.-.+....++.
T Consensus 76 ~~e~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~---~~-d~rnrn~~~~~~qr~~~~P~~~~~y~~l 148 (267)
T KOG4454|consen 76 EDEEQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPT---DN-DGRNRNFGFVTYQRLCAVPFALDLYQGL 148 (267)
T ss_pred cchhhcccccCCCcchhhhhcchhhheeeecccCCCCCccccc---cc-cCCccCccchhhhhhhcCcHHhhhhccc
Confidence 345567889999 999999999999999999999999873 32 2789999999998877777777666654
No 180
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=44.95 E-value=1.2e+02 Score=29.57 Aligned_cols=83 Identities=20% Similarity=0.426 Sum_probs=52.0
Q ss_pred ccccHHHHHHHHHHHhcccCCCcccchheeeeehhhhccCCCCCCCccchHHHHHHhhHHHHHHHHHHHhhhhcccchHH
Q 003091 350 NADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTKFEATLPDIMESFNDLYRSITGRITAEA 429 (848)
Q Consensus 350 h~~~a~eiv~~l~~~l~~~~~~~~~KL~~LYLinDIL~ns~~~~~~a~~yr~~fe~~Lp~if~~l~~~~~~~~~r~~ae~ 429 (848)
....+.+++.+|.+.|.. .+....+.-|.|+.=++.||.. .|...|... ..+..|..+.. +.-..+.
T Consensus 36 ~~~~~kea~~~l~krl~~--~~~~vq~~aL~lld~lvkNcg~------~f~~ev~~~--~fl~~l~~l~~---~~~~~~~ 102 (140)
T PF00790_consen 36 SPDGAKEAARALRKRLKH--GNPNVQLLALTLLDALVKNCGP------RFHREVASK--EFLDELVKLIK---SKKTDPE 102 (140)
T ss_dssp STTHHHHHHHHHHHHHTT--SSHHHHHHHHHHHHHHHHHSHH------HHHHHHTSH--HHHHHHHHHHH---HTTTHHH
T ss_pred CCccHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHHHcCCH------HHHHHHhHH--HHHHHHHHHHc---cCCCCch
Confidence 344588999999999965 3456677779999999999952 233332111 11112222221 1222333
Q ss_pred --HHHHHHHHHHhhccCc
Q 003091 430 --LKERVLKVLQVWSDWF 445 (848)
Q Consensus 430 --~k~kV~~vL~iWe~~~ 445 (848)
.++|++.+|..|....
T Consensus 103 ~~Vk~k~l~ll~~W~~~f 120 (140)
T PF00790_consen 103 TPVKEKILELLQEWAEAF 120 (140)
T ss_dssp SHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 8999999999998765
No 181
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=39.38 E-value=18 Score=39.00 Aligned_cols=69 Identities=26% Similarity=0.402 Sum_probs=45.4
Q ss_pred EEEEecCCC------------CCCHHHHHHHhccCCCeeEEEEeC--CCcccccCCcc-----cEE---------EEEeC
Q 003091 62 NLYVGNLSP------------QVDENFLLRTFGRFGPIASVKIMW--PRTEEERRRQR-----NCG---------FVAFM 113 (848)
Q Consensus 62 ~LfVgNLp~------------~vte~~L~~~F~~fG~I~svkI~~--pr~d~~tg~~r-----g~g---------FV~F~ 113 (848)
|||+.+||- --++..|...|..||.|..|.|.. |.....+|+.. ||| ||.|+
T Consensus 151 ti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqfm 230 (445)
T KOG2891|consen 151 TIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQFM 230 (445)
T ss_pred ceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHHH
Confidence 778888774 246788999999999998887653 32233344442 333 35566
Q ss_pred CHHHHHHHHHHcCCcee
Q 003091 114 NRADGQAAKDEMQGVVV 130 (848)
Q Consensus 114 ~~~~A~~Ai~~lnG~~i 130 (848)
.......|+.+|.|..+
T Consensus 231 eykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 231 EYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHhHHHHHHHHhcchH
Confidence 66666777777777654
No 182
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=35.68 E-value=65 Score=35.42 Aligned_cols=84 Identities=17% Similarity=0.290 Sum_probs=58.9
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCC----cccccCCcccEEEEEeCCHHHHHHH----HHHcCC--
Q 003091 58 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPR----TEEERRRQRNCGFVAFMNRADGQAA----KDEMQG-- 127 (848)
Q Consensus 58 ~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr----~d~~tg~~rg~gFV~F~~~~~A~~A----i~~lnG-- 127 (848)
-.+.+|.+.|+...++-..+...|.+||+|.+|.++... .+...-+...+..+.|-+++.+..- ++.|..
T Consensus 13 YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK 92 (309)
T PF10567_consen 13 YRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFK 92 (309)
T ss_pred ceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHH
Confidence 346679999999999999999999999999999999421 0111223346778999998876432 222222
Q ss_pred ceecCeEEEEEecc
Q 003091 128 VVVYEYELKIGWGK 141 (848)
Q Consensus 128 ~~i~G~~L~V~~ak 141 (848)
..+....|.|.|..
T Consensus 93 ~~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 93 TKLKSESLTLSFVS 106 (309)
T ss_pred HhcCCcceeEEEEE
Confidence 23677788888865
No 183
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=35.21 E-value=1.9e+02 Score=31.65 Aligned_cols=54 Identities=20% Similarity=0.246 Sum_probs=39.7
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHH
Q 003091 57 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADG 118 (848)
Q Consensus 57 d~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A 118 (848)
.+..+-|||+||+.++.-.+|+..+-+-|.+ -..|-| . -+.+-||+.|-+...+
T Consensus 327 a~~~~di~~~nl~rd~rv~dlk~~lr~~~~~-pm~isw------k-g~~~k~flh~~~~~~~ 380 (396)
T KOG4410|consen 327 AGAKTDIKLTNLSRDIRVKDLKSELRKRECT-PMSISW------K-GHFGKCFLHFGNRKGV 380 (396)
T ss_pred CccccceeeccCccccchHHHHHHHHhcCCC-ceeEee------e-cCCcceeEecCCccCC
Confidence 3456779999999999999999998877642 234444 1 2557789999876544
No 184
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=32.84 E-value=1.8e+02 Score=27.98 Aligned_cols=79 Identities=13% Similarity=0.289 Sum_probs=51.7
Q ss_pred cccHHHHHHHHHHHhcccCCCcccchheeeeehhhhccCCCCCCCccchHHHHHH--hhHHHHHHHHHHHhhhhcc-cch
Q 003091 351 ADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTKFEA--TLPDIMESFNDLYRSITGR-ITA 427 (848)
Q Consensus 351 ~~~a~eiv~~l~~~l~~~~~~~~~KL~~LYLinDIL~ns~~~~~~a~~yr~~fe~--~Lp~if~~l~~~~~~~~~r-~~a 427 (848)
...+.+.+..|.+.|... +....+.-|.|+-=++.||..+ |...|.. .|-. |..+. ... ...
T Consensus 32 ~~~~k~a~raL~krl~~~--n~~vql~AL~lLd~~vkNcg~~------f~~~i~s~~fl~~----l~~l~---~~~~~~~ 96 (133)
T cd03561 32 PNGPKEAARAIRKKIKYG--NPHVQLLALTLLELLVKNCGKP------FHLQVADKEFLLE----LVKIA---KNSPKYD 96 (133)
T ss_pred CCCHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHhCChH------HHHHHhhHHHHHH----HHHHh---CCCCCCC
Confidence 345889999999999654 3556677799999999999732 3333322 1111 11111 111 356
Q ss_pred HHHHHHHHHHHHhhccC
Q 003091 428 EALKERVLKVLQVWSDW 444 (848)
Q Consensus 428 e~~k~kV~~vL~iWe~~ 444 (848)
...++|+..+|..|...
T Consensus 97 ~~Vk~kil~ll~~W~~~ 113 (133)
T cd03561 97 PKVREKALELILAWSES 113 (133)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 78999999999999873
No 185
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=32.62 E-value=11 Score=41.85 Aligned_cols=12 Identities=25% Similarity=0.445 Sum_probs=7.5
Q ss_pred hhHHHHHHHHHH
Q 003091 406 TLPDIMESFNDL 417 (848)
Q Consensus 406 ~Lp~if~~l~~~ 417 (848)
-|--||+.|+.+
T Consensus 255 DLeiIFSrFG~i 266 (479)
T KOG0415|consen 255 DLEIIFSRFGKI 266 (479)
T ss_pred chhhHHhhcccc
Confidence 366678776644
No 186
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=31.59 E-value=2.5e+02 Score=27.18 Aligned_cols=80 Identities=20% Similarity=0.332 Sum_probs=48.9
Q ss_pred ccHHHHHHHHHHHhcccCCCcccchheeeeehhhhccCCCCCCCccchHHHHHHhhHHHHHHHHHHHhhhhcccchHHHH
Q 003091 352 DAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTKFEATLPDIMESFNDLYRSITGRITAEALK 431 (848)
Q Consensus 352 ~~a~eiv~~l~~~l~~~~~~~~~KL~~LYLinDIL~ns~~~~~~a~~yr~~fe~~Lp~if~~l~~~~~~~~~r~~ae~~k 431 (848)
..+.+.+..|.+.|... +....+.-|-|+.-++.||.......- -...|-..|..++ ..+-..+..+
T Consensus 33 ~~~k~a~r~l~krl~~~--n~~v~l~AL~lLe~~vkNcg~~f~~ev-~s~~fl~~L~~l~----------~~~~~~~~Vk 99 (133)
T smart00288 33 DGPKDAVRLLKKRLNNK--NPHVALLALTLLDACVKNCGSKFHLEV-ASKEFLNELVKLI----------KPKYPLPLVK 99 (133)
T ss_pred ccHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHCCHHHHHHH-HhHHHHHHHHHHH----------cCCCCcHHHH
Confidence 34788999999999643 345566678999999999973321100 0111222222222 2222333489
Q ss_pred HHHHHHHHhhccC
Q 003091 432 ERVLKVLQVWSDW 444 (848)
Q Consensus 432 ~kV~~vL~iWe~~ 444 (848)
+||..++..|...
T Consensus 100 ~kil~li~~W~~~ 112 (133)
T smart00288 100 KRILELIQEWADA 112 (133)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999863
No 187
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=30.59 E-value=2.3e+02 Score=27.87 Aligned_cols=82 Identities=16% Similarity=0.301 Sum_probs=49.4
Q ss_pred cHHHHHHHHHHHhcccCCCcccchheeeeehhhhccCCCCCCCccchHHHHHHhhHHHHHHHHHHHhhhhcccchHHHHH
Q 003091 353 AAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTKFEATLPDIMESFNDLYRSITGRITAEALKE 432 (848)
Q Consensus 353 ~a~eiv~~l~~~l~~~~~~~~~KL~~LYLinDIL~ns~~~~~~a~~yr~~fe~~Lp~if~~l~~~~~~~~~r~~ae~~k~ 432 (848)
.+.+.+.+|.+.|...+ ....|--|-|+-=+..||........ -...|-.-|..++. .-| .|.......++
T Consensus 35 ~~k~a~rai~krl~~~n--~~v~l~AL~LLe~~vkNCG~~fh~ev-as~~Fl~el~kl~~---~k~---~~~~~~~~Vk~ 105 (139)
T cd03567 35 GPQLAVRLLAHKIQSPQ--EKEALQALTVLEACMKNCGERFHSEV-GKFRFLNELIKLVS---PKY---LGSRTSEKVKT 105 (139)
T ss_pred cHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHHcCHHHHHHH-HhHHHHHHHHHHhc---ccc---CCCCCCHHHHH
Confidence 36788888888886443 34456667788888888873322111 11222223333331 111 13445679999
Q ss_pred HHHHHHHhhcc
Q 003091 433 RVLKVLQVWSD 443 (848)
Q Consensus 433 kV~~vL~iWe~ 443 (848)
||..+|..|..
T Consensus 106 kil~li~~W~~ 116 (139)
T cd03567 106 KIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHHH
Confidence 99999999985
No 188
>KOG1049 consensus Polyadenylation factor I complex, subunit FIP1 [RNA processing and modification]
Probab=29.96 E-value=41 Score=39.72 Aligned_cols=8 Identities=13% Similarity=0.422 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 003091 518 SELERRCR 525 (848)
Q Consensus 518 ~~l~~~c~ 525 (848)
.+|.-+|+
T Consensus 186 eTWk~YC~ 193 (538)
T KOG1049|consen 186 ETWKAYCE 193 (538)
T ss_pred HHHHHHHH
Confidence 33333333
No 189
>KOG2045 consensus 5'-3' exonuclease XRN1/KEM1/SEP1 involved in DNA strand exchange and mRNA turnover [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=29.89 E-value=41 Score=42.08 Aligned_cols=45 Identities=27% Similarity=0.488 Sum_probs=34.1
Q ss_pred heeee-ehhhhccCCCCCCCccchHHHHHHhhHHHHHHHHHHHhhh
Q 003091 377 ARLML-VSDVLHNSSAPVKNASAYRTKFEATLPDIMESFNDLYRSI 421 (848)
Q Consensus 377 ~~LYL-inDIL~ns~~~~~~a~~yr~~fe~~Lp~if~~l~~~~~~~ 421 (848)
.-||| +|-|||||+.+--+-..|+-.=|.++..||..+..+|.-|
T Consensus 30 DNLYLDMNgIlHNCsH~nDddvt~rLtEeEif~~IfnYIdhLf~~I 75 (1493)
T KOG2045|consen 30 DNLYLDMNGILHNCSHPNDDDVTFRLTEEEIFQEIFNYIDHLFYLI 75 (1493)
T ss_pred cceeeecccccccCCCCCCCccCcCCCHHHHHHHHHHHHHHHHHhh
Confidence 45888 7999999997766666788877888888887666665543
No 190
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=29.06 E-value=2.2e+02 Score=33.07 Aligned_cols=112 Identities=13% Similarity=0.190 Sum_probs=77.6
Q ss_pred CCCCHHHHHHHHHHHHhcc------cCHHHHHHHHHHHH-hccccHHHHHHHHHHHhcccCCCcccchheeeeehhhhcc
Q 003091 316 RTLTDSQRDEFEDMLRALT------LERSQIKEAMGFAL-DNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHN 388 (848)
Q Consensus 316 ~~L~~~~~~~l~~lL~~Lt------~tr~sI~~~~~w~l-~h~~~a~eiv~~l~~~l~~~~~~~~~KL~~LYLinDIL~n 388 (848)
.+|.++...-|...|-.|. .--..+..|+..++ .....+..++..|+++- +.+...+.+..|..+.+||-.
T Consensus 208 ~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~i~~llk~W--P~t~s~Kev~FL~el~~il~~ 285 (409)
T PF01603_consen 208 VPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPVIKGLLKHW--PKTNSQKEVLFLNELEEILEV 285 (409)
T ss_dssp SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHHHHHHHHHS---SS-HHHHHHHHHHHHHHHTT
T ss_pred CCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHhC--CCCCchhHHHHHHHHHHHHHh
Confidence 3677777777777777772 22455566655555 45555888999888887 456678889999999999987
Q ss_pred CCCCCCCccchHHHHHHhhHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHhhccCcc
Q 003091 389 SSAPVKNASAYRTKFEATLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWSDWFL 446 (848)
Q Consensus 389 s~~~~~~a~~yr~~fe~~Lp~if~~l~~~~~~~~~r~~ae~~k~kV~~vL~iWe~~~v 446 (848)
+. -..|.+.+..+|..++.+..+.. -+-.++.|.+|....+
T Consensus 286 ~~---------~~~f~~i~~~lf~~la~ci~S~h--------~qVAErAl~~w~n~~~ 326 (409)
T PF01603_consen 286 LP---------PEEFQKIMVPLFKRLAKCISSPH--------FQVAERALYFWNNEYF 326 (409)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHTSSS--------HHHHHHHHGGGGSHHH
T ss_pred cC---------HHHHHHHHHHHHHHHHHHhCCCC--------HHHHHHHHHHHCCHHH
Confidence 64 35688999999998888776532 4456889999987654
No 191
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=28.66 E-value=66 Score=33.06 Aligned_cols=38 Identities=32% Similarity=0.365 Sum_probs=33.3
Q ss_pred CCCCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEe
Q 003091 56 GDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIM 93 (848)
Q Consensus 56 ~d~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~ 93 (848)
.....+.+++++++..++...+...|..+|.+..+.+.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (306)
T COG0724 221 LLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLP 258 (306)
T ss_pred cccccceeeccccccccchhHHHHhccccccceeeecc
Confidence 34567899999999999999999999999999777666
No 192
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=28.53 E-value=1.1e+02 Score=37.76 Aligned_cols=14 Identities=21% Similarity=0.529 Sum_probs=7.0
Q ss_pred hHHHHHHhhHHHHH
Q 003091 399 YRTKFEATLPDIME 412 (848)
Q Consensus 399 yr~~fe~~Lp~if~ 412 (848)
|...+...-|.|.+
T Consensus 790 fse~vnniKP~i~a 803 (1102)
T KOG1924|consen 790 FSEQVNNIKPDIVA 803 (1102)
T ss_pred HHHHHhhcChHHHH
Confidence 44444444555553
No 193
>PF07498 Rho_N: Rho termination factor, N-terminal domain; InterPro: IPR011112 The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts. It is thought that two copies of Rho bind to RNA and that Rho functions as a hexamer of protomers []. This domain is found to the N terminus of the RNA binding domain (IPR011113 from INTERPRO).; GO: 0006353 transcription termination, DNA-dependent; PDB: 1A8V_B 1PVO_A 1PV4_D 3ICE_A 1XPU_C 1XPO_D 1XPR_F 2A8V_B 2HT1_B 1A63_A ....
Probab=28.34 E-value=81 Score=24.47 Aligned_cols=35 Identities=23% Similarity=0.320 Sum_probs=26.2
Q ss_pred HhhcCChHHHHHHHHHcCcccc--CChHHHHHHHHhH
Q 003091 511 ELMNLPLSELERRCRHNGLSLV--GGREMMVARLLSL 545 (848)
Q Consensus 511 ~~~~~~~~~l~~~c~~~gl~~~--~~~~~~~~rL~~~ 545 (848)
++..++..+|..+|+..||... -.+++||..++.-
T Consensus 1 eL~~~~~~eL~~iAk~lgI~~~~~~~K~eLI~~Il~~ 37 (43)
T PF07498_consen 1 ELKSMTLSELREIAKELGIEGYSKMRKQELIFAILKA 37 (43)
T ss_dssp HHHCS-HHHHHHHHHCTT-TTGCCS-HHHHHHHHHHH
T ss_pred CcccCCHHHHHHHHHHcCCCCCCcCCHHHHHHHHHHH
Confidence 3667899999999999999765 4888999888653
No 194
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=27.43 E-value=2.2e+02 Score=28.11 Aligned_cols=80 Identities=18% Similarity=0.344 Sum_probs=50.2
Q ss_pred cccHHHHHHHHHHHhcccCCCcccchheeeeehhhhccCCCCCCCccchHHHHHHhhHHHHHHHHHHHhhhhcccchHHH
Q 003091 351 ADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTKFEATLPDIMESFNDLYRSITGRITAEAL 430 (848)
Q Consensus 351 ~~~a~eiv~~l~~~l~~~~~~~~~KL~~LYLinDIL~ns~~~~~~a~~yr~~fe~~Lp~if~~l~~~~~~~~~r~~ae~~ 430 (848)
...+.+.+.+|.+.|...+ ....+.-|-|+-=+..||........ -...|-..|..++ ..+ .....
T Consensus 32 ~~~~k~a~ral~KRl~~~n--~~v~l~AL~LLe~~vkNCG~~fh~ev-ask~Fl~eL~kl~----------~~~-~~~~V 97 (144)
T cd03568 32 ENGAKDCLKAIMKRLNHKD--PNVQLRALTLLDACAENCGKRFHQEV-ASRDFTQELKKLI----------NDR-VHPTV 97 (144)
T ss_pred CccHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHHCCHHHHHHH-hhHHHHHHHHHHh----------ccc-CCHHH
Confidence 3457888999999986533 45566678888888899973322111 0112222232222 222 45699
Q ss_pred HHHHHHHHHhhccC
Q 003091 431 KERVLKVLQVWSDW 444 (848)
Q Consensus 431 k~kV~~vL~iWe~~ 444 (848)
+++|+.+|.-|..-
T Consensus 98 k~kil~li~~W~~~ 111 (144)
T cd03568 98 KEKLREVVKQWADE 111 (144)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999853
No 195
>KOG1869 consensus Splicing coactivator SRm160/300, subunit SRm300 [RNA processing and modification]
Probab=25.22 E-value=1.7e+02 Score=33.47 Aligned_cols=36 Identities=47% Similarity=0.647 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHhhhh
Q 003091 702 LRRLEVSLIEYRESLEERGIKSSEEIEKKVAIHRKRL 738 (848)
Q Consensus 702 l~~~~~~~~~~r~~~ee~~~~~~ee~~~~~~~~r~~~ 738 (848)
-++||+.++++++.|+++|..+ +++..++...+.-+
T Consensus 63 kRqIE~K~le~ee~lleqg~se-eei~~k~~e~rknl 98 (425)
T KOG1869|consen 63 KRQIELKLLELEESLLEQGLSE-EEILSKVQEDRKNL 98 (425)
T ss_pred HHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHhH
Confidence 3789999999999999999966 66666666655443
No 196
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=24.04 E-value=2.7e+02 Score=35.50 Aligned_cols=22 Identities=14% Similarity=-0.056 Sum_probs=15.1
Q ss_pred CCcccEEEEEeCCHHHHHHHHH
Q 003091 102 RRQRNCGFVAFMNRADGQAAKD 123 (848)
Q Consensus 102 g~~rg~gFV~F~~~~~A~~Ai~ 123 (848)
+-+.|++|+.....+.|..|..
T Consensus 202 rIgig~Cf~kl~~~~~a~~a~~ 223 (1018)
T KOG2002|consen 202 RIGIGHCFWKLGMSEKALLAFE 223 (1018)
T ss_pred cchhhhHHHhccchhhHHHHHH
Confidence 4455788888888877755543
No 197
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=22.25 E-value=1.1e+02 Score=27.63 Aligned_cols=36 Identities=17% Similarity=0.261 Sum_probs=28.6
Q ss_pred hhHHHhhcCChHHHHHHHHHcCccccCChHHHHHHH
Q 003091 507 AAIKELMNLPLSELERRCRHNGLSLVGGREMMVARL 542 (848)
Q Consensus 507 ~~~~~~~~~~~~~l~~~c~~~gl~~~~~~~~~~~rL 542 (848)
-..+.+..+.+.+|.++|++.||+.....-..|.-+
T Consensus 7 iVn~Kln~iT~~eLlkyskqy~i~it~~QA~~I~~~ 42 (85)
T PF11116_consen 7 IVNQKLNNITAKELLKYSKQYNISITKKQAEQIANI 42 (85)
T ss_pred HHHHHHhcCCHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 356788999999999999999999986555555433
No 198
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=20.72 E-value=2.9e+02 Score=31.78 Aligned_cols=37 Identities=35% Similarity=0.492 Sum_probs=28.5
Q ss_pred CCCccEEEEecCCC-CCCHHHHHHHhccC----CCeeEEEEe
Q 003091 57 DPQTTNLYVGNLSP-QVDENFLLRTFGRF----GPIASVKIM 93 (848)
Q Consensus 57 d~~~t~LfVgNLp~-~vte~~L~~~F~~f----G~I~svkI~ 93 (848)
...+.+|-|-||.+ .|...+|..+|+.| |.|..|.|.
T Consensus 143 G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iy 184 (622)
T COG5638 143 GNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIY 184 (622)
T ss_pred CCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEec
Confidence 44567899999997 67778999888755 467778876
No 199
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.39 E-value=1e+02 Score=35.20 Aligned_cols=55 Identities=15% Similarity=0.270 Sum_probs=44.1
Q ss_pred cEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHH
Q 003091 61 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDE 124 (848)
Q Consensus 61 t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~ 124 (848)
..|=|.+.|...-.++|..+|..||. ..++|+| .| ...+|-.|.+...|..|+..
T Consensus 392 HVlEIydfp~efkteDll~~f~~yq~-kgfdIkW--vD------dthalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 392 HVLEIYDFPDEFKTEDLLKAFETYQN-KGFDIKW--VD------DTHALAVFSSVNRAAEALTL 446 (528)
T ss_pred ceeEeccCchhhccHHHHHHHHHhhc-CCceeEE--ee------cceeEEeecchHHHHHHhhc
Confidence 46788899999999999999999985 4556666 23 35689999999999999853
No 200
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=20.17 E-value=1.8e+02 Score=23.01 Aligned_cols=35 Identities=23% Similarity=0.266 Sum_probs=27.9
Q ss_pred hhcCChHHHHHHHHHcCcccc----CChHHHHHHHHhHH
Q 003091 512 LMNLPLSELERRCRHNGLSLV----GGREMMVARLLSLE 546 (848)
Q Consensus 512 ~~~~~~~~l~~~c~~~gl~~~----~~~~~~~~rL~~~~ 546 (848)
+..+..++|...|++.|+... .++...+.+|..+.
T Consensus 3 ~~~LSd~eL~~~L~~~G~~~gPIt~sTR~vy~kkL~~~~ 41 (44)
T smart00540 3 VDRLSDAELRAELKQYGLPPGPITDTTRKLYEKKLRKLR 41 (44)
T ss_pred hhHcCHHHHHHHHHHcCCCCCCcCcchHHHHHHHHHHHH
Confidence 456788999999999999874 57777888887654
Done!