Query 003091
Match_columns 848
No_of_seqs 634 out of 3481
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 12:59:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003091.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003091hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2km4_A Regulator of TY1 transp 99.9 5.6E-26 1.9E-30 220.5 10.2 129 323-461 5-133 (142)
2 4fu3_A Regulation of nuclear P 99.9 5.2E-25 1.8E-29 211.9 7.9 128 322-462 5-132 (135)
3 4flb_A Regulation of nuclear P 99.9 1.4E-24 4.7E-29 208.2 8.1 125 321-460 5-129 (132)
4 1x4o_A Splicing factor 4; stru 99.8 4E-21 1.4E-25 166.6 1.2 72 195-266 5-76 (78)
5 1ug0_A Splicing factor 4; SURP 99.8 2E-20 6.7E-25 165.8 0.2 71 196-266 16-86 (88)
6 1sz9_A PCF11 protein; RNA poly 99.7 3.6E-18 1.2E-22 165.7 11.2 125 321-461 7-137 (144)
7 4fxv_A ELAV-like protein 1; RN 99.7 4.7E-18 1.6E-22 154.5 10.8 83 57-142 16-98 (99)
8 2dgo_A Cytotoxic granule-assoc 99.7 5.5E-16 1.9E-20 143.8 15.0 88 56-146 11-98 (115)
9 3s8s_A Histone-lysine N-methyl 99.7 1.8E-16 6.1E-21 146.9 11.6 83 58-143 4-86 (110)
10 3d9j_A RNA-binding protein 16; 99.7 3.4E-17 1.1E-21 159.2 6.5 129 322-461 3-137 (145)
11 2e5z_A SFRS8 protein, splicing 99.7 9.8E-18 3.4E-22 147.9 2.5 66 197-266 15-80 (90)
12 2e5h_A Zinc finger CCHC-type a 99.7 5.1E-16 1.7E-20 138.5 12.7 82 57-141 13-94 (94)
13 2e60_A SFRS8 protein, splicing 99.7 1.7E-17 5.9E-22 150.3 2.7 68 197-265 17-84 (101)
14 3md1_A Nuclear and cytoplasmic 99.7 4.7E-16 1.6E-20 135.3 11.1 81 60-143 1-81 (83)
15 2cqd_A RNA-binding region cont 99.7 1.3E-15 4.5E-20 141.5 14.6 88 56-147 13-100 (116)
16 2lxi_A RNA-binding protein 10; 99.6 1.4E-16 4.7E-21 142.4 7.5 82 60-144 1-84 (91)
17 3bs9_A Nucleolysin TIA-1 isofo 99.6 4E-16 1.4E-20 137.0 10.4 83 58-143 4-86 (87)
18 2dnz_A Probable RNA-binding pr 99.6 8.6E-16 2.9E-20 137.3 12.6 84 58-144 3-86 (95)
19 2khc_A Testis-specific RNP-typ 99.6 1.2E-15 4E-20 142.2 14.1 84 55-141 35-118 (118)
20 1whw_A Hypothetical protein ri 99.6 9.1E-16 3.1E-20 138.3 12.6 85 58-145 6-90 (99)
21 2dgs_A DAZ-associated protein 99.6 1.1E-15 3.7E-20 137.9 13.1 83 58-144 8-90 (99)
22 2cpz_A CUG triplet repeat RNA- 99.6 1.2E-15 4.2E-20 141.5 13.8 85 57-144 22-106 (115)
23 2cqb_A Peptidyl-prolyl CIS-tra 99.6 7.4E-16 2.5E-20 139.7 11.8 85 58-145 10-94 (102)
24 2cq0_A Eukaryotic translation 99.6 1.2E-15 4.2E-20 138.6 13.1 85 57-144 12-96 (103)
25 3mdf_A Peptidyl-prolyl CIS-tra 99.6 5.4E-16 1.9E-20 135.6 10.2 81 58-141 5-85 (85)
26 4f25_A Polyadenylate-binding p 99.6 5E-16 1.7E-20 144.7 10.6 80 59-143 4-83 (115)
27 2lkz_A RNA-binding protein 5; 99.6 3E-16 1E-20 141.7 8.6 80 60-142 9-94 (95)
28 2dt6_A Splicing factor 3 subun 99.6 2.3E-17 8E-22 137.8 1.1 60 206-266 2-61 (64)
29 2cpf_A RNA binding motif prote 99.6 8E-16 2.8E-20 138.4 11.0 85 58-145 3-90 (98)
30 2do4_A Squamous cell carcinoma 99.6 1.3E-15 4.3E-20 137.8 12.3 83 57-143 14-96 (100)
31 2cqc_A Arginine/serine-rich sp 99.6 1.3E-15 4.3E-20 136.1 11.9 83 57-142 12-94 (95)
32 2dnm_A SRP46 splicing factor; 99.6 1.1E-15 3.8E-20 138.9 11.4 84 58-144 11-94 (103)
33 1p27_B RNA-binding protein 8A; 99.6 7.8E-16 2.7E-20 140.5 10.2 84 58-144 21-104 (106)
34 3p5t_L Cleavage and polyadenyl 99.6 1.9E-16 6.4E-21 140.8 5.9 81 61-144 2-84 (90)
35 1x5u_A Splicing factor 3B subu 99.6 1.8E-15 6.1E-20 137.9 12.6 85 57-144 12-96 (105)
36 2fy1_A RNA-binding motif prote 99.6 1.9E-15 6.4E-20 141.1 12.9 83 59-145 6-88 (116)
37 2cph_A RNA binding motif prote 99.6 2E-15 6.8E-20 137.9 12.8 85 57-144 12-98 (107)
38 2d9p_A Polyadenylate-binding p 99.6 2E-15 6.9E-20 137.2 12.7 84 57-145 12-95 (103)
39 1x5t_A Splicing factor 3B subu 99.6 1.3E-15 4.5E-20 136.3 11.3 84 58-144 3-87 (96)
40 2dgp_A Bruno-like 4, RNA bindi 99.6 1.3E-15 4.3E-20 139.2 11.2 86 56-144 9-97 (106)
41 2do0_A HnRNP M, heterogeneous 99.6 4.6E-15 1.6E-19 137.2 15.1 84 57-144 12-95 (114)
42 2x1f_A MRNA 3'-END-processing 99.6 1.3E-15 4.4E-20 136.8 10.9 83 60-145 2-84 (96)
43 2la6_A RNA-binding protein FUS 99.6 1.2E-15 4E-20 137.8 10.7 82 57-141 10-99 (99)
44 1x5s_A Cold-inducible RNA-bind 99.6 1.4E-15 5E-20 137.7 11.3 85 58-145 10-94 (102)
45 2jrs_A RNA-binding protein 39; 99.6 1.1E-15 3.7E-20 140.9 10.6 86 55-143 21-106 (108)
46 2cq3_A RNA-binding protein 9; 99.6 4.9E-15 1.7E-19 134.6 14.7 85 56-145 11-95 (103)
47 1x4h_A RNA-binding protein 28; 99.6 3.5E-15 1.2E-19 137.2 13.4 84 58-144 13-102 (111)
48 2div_A TRNA selenocysteine ass 99.6 1E-15 3.4E-20 138.1 9.3 85 58-145 7-96 (99)
49 1sjq_A Polypyrimidine tract-bi 99.6 1.2E-15 4.1E-20 140.1 9.7 81 57-146 13-95 (105)
50 2dnh_A Bruno-like 5, RNA bindi 99.6 3.5E-15 1.2E-19 135.9 12.7 84 57-144 12-98 (105)
51 2cpe_A RNA-binding protein EWS 99.6 3E-15 1E-19 138.3 12.4 85 57-144 12-104 (113)
52 2kt5_A RNA and export factor-b 99.6 9.7E-15 3.3E-19 137.4 16.0 86 57-146 32-117 (124)
53 1oo0_B CG8781-PA, drosophila Y 99.6 2E-15 6.9E-20 138.8 11.0 85 57-144 23-107 (110)
54 3ns6_A Eukaryotic translation 99.6 4E-16 1.4E-20 141.7 6.1 81 59-142 5-92 (100)
55 2dng_A Eukaryotic translation 99.6 5.4E-15 1.8E-19 134.5 13.5 83 57-144 12-94 (103)
56 2dhg_A TRNA selenocysteine ass 99.6 1.7E-15 5.7E-20 137.8 10.1 84 58-145 7-92 (104)
57 3r27_A HnRNP L, heterogeneous 99.6 2.9E-15 9.8E-20 136.3 11.4 79 58-145 19-99 (100)
58 2ywk_A Putative RNA-binding pr 99.6 2.2E-15 7.5E-20 134.6 10.2 82 57-142 13-94 (95)
59 2dgx_A KIAA0430 protein; RRM d 99.6 3.7E-15 1.3E-19 134.1 11.7 82 58-145 7-92 (96)
60 1wex_A Hypothetical protein (r 99.6 5.3E-15 1.8E-19 135.7 13.0 80 57-145 12-93 (104)
61 2cqp_A RNA-binding protein 12; 99.6 2.3E-15 7.8E-20 135.4 10.0 84 56-142 11-94 (98)
62 2dh8_A DAZ-associated protein 99.6 3E-15 1E-19 136.5 10.7 85 56-144 12-96 (105)
63 1h2v_Z 20 kDa nuclear CAP bind 99.6 4.2E-15 1.4E-19 145.5 12.4 85 57-144 36-120 (156)
64 4a8x_A RNA-binding protein wit 99.6 2.5E-15 8.6E-20 132.0 9.7 82 59-143 3-85 (88)
65 3n9u_C Cleavage and polyadenyl 99.6 1.9E-15 6.5E-20 148.7 9.8 82 59-143 54-137 (156)
66 2err_A Ataxin-2-binding protei 99.6 3.5E-15 1.2E-19 137.6 11.0 84 56-144 25-108 (109)
67 1wi8_A EIF-4B, eukaryotic tran 99.6 8.4E-15 2.9E-19 133.4 13.3 82 58-144 13-95 (104)
68 2cqg_A TDP-43, TAR DNA-binding 99.6 9.9E-15 3.4E-19 132.6 13.6 85 56-145 11-95 (103)
69 1x4a_A Splicing factor, argini 99.6 1.4E-14 4.9E-19 133.0 14.9 82 57-144 19-100 (109)
70 3ex7_B RNA-binding protein 8A; 99.6 2.8E-15 9.5E-20 141.3 10.1 86 57-145 19-104 (126)
71 1u6f_A Tcubp1, RNA-binding pro 99.6 5.7E-15 2E-19 141.5 12.5 85 57-144 39-123 (139)
72 3ulh_A THO complex subunit 4; 99.6 4.4E-15 1.5E-19 135.7 11.1 80 58-141 27-106 (107)
73 2dgv_A HnRNP M, heterogeneous 99.6 3.6E-15 1.2E-19 132.4 10.2 83 58-145 6-88 (92)
74 2cqi_A Nucleolysin TIAR; RNA r 99.6 1.3E-14 4.4E-19 131.8 14.0 83 57-144 12-94 (103)
75 1x4e_A RNA binding motif, sing 99.6 1.1E-15 3.7E-20 133.9 6.5 81 58-141 3-83 (85)
76 2m2b_A RNA-binding protein 10; 99.6 2.7E-15 9.2E-20 142.9 9.7 86 55-144 18-109 (131)
77 3s7r_A Heterogeneous nuclear r 99.6 6.2E-15 2.1E-19 129.6 11.3 80 57-140 8-87 (87)
78 2cpi_A CCR4-NOT transcription 99.6 5.4E-15 1.8E-19 136.7 11.2 87 58-144 13-102 (111)
79 2dgt_A RNA-binding protein 30; 99.6 1.3E-14 4.4E-19 129.2 13.2 78 57-145 7-84 (92)
80 2kxn_B Transformer-2 protein h 99.6 3.6E-15 1.2E-19 142.0 9.9 84 57-143 43-126 (129)
81 2ytc_A PRE-mRNA-splicing facto 99.6 5.9E-15 2E-19 129.1 10.5 76 57-141 9-85 (85)
82 2cq4_A RNA binding motif prote 99.6 4.1E-15 1.4E-19 137.8 10.0 83 58-144 23-105 (114)
83 2cq1_A PTB-like protein L; RRM 99.6 1.4E-14 4.6E-19 132.3 13.1 81 57-146 12-94 (101)
84 2ki2_A SS-DNA binding protein 99.6 8.3E-16 2.8E-20 136.1 4.8 81 61-145 2-82 (90)
85 3ucg_A Polyadenylate-binding p 99.6 5.7E-15 1.9E-19 130.2 10.1 81 59-143 5-85 (89)
86 2a3j_A U1 small nuclear ribonu 99.6 4.6E-15 1.6E-19 141.0 10.1 81 58-144 27-111 (127)
87 1p1t_A Cleavage stimulation fa 99.6 1.7E-15 5.9E-20 137.6 6.8 84 58-144 6-89 (104)
88 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 1.2E-14 4.1E-19 138.9 12.9 82 56-140 59-140 (140)
89 2dgw_A Probable RNA-binding pr 99.6 1.2E-14 4.1E-19 129.0 11.9 80 58-143 8-87 (91)
90 2ad9_A Polypyrimidine tract-bi 99.6 8.5E-15 2.9E-19 137.5 11.5 81 57-146 28-110 (119)
91 1s79_A Lupus LA protein; RRM, 99.6 4.3E-15 1.5E-19 136.0 9.2 81 57-142 8-88 (103)
92 1x4b_A Heterogeneous nuclear r 99.6 1.2E-14 3.9E-19 135.1 12.0 83 58-144 25-107 (116)
93 1x4f_A Matrin 3; structural ge 99.6 8E-15 2.7E-19 136.3 10.8 83 54-145 19-104 (112)
94 1x4d_A Matrin 3; structural ge 99.6 8.2E-15 2.8E-19 134.0 10.6 77 59-144 14-93 (102)
95 2dis_A Unnamed protein product 99.6 8.6E-15 2.9E-19 134.3 10.8 87 58-146 6-95 (109)
96 2kn4_A Immunoglobulin G-bindin 99.6 9.5E-15 3.3E-19 142.9 11.7 85 57-144 67-151 (158)
97 2wbr_A GW182, gawky, LD47780P; 99.6 7.8E-15 2.7E-19 129.7 9.9 74 59-141 6-79 (89)
98 2fc9_A NCL protein; structure 99.6 2.2E-14 7.7E-19 129.7 13.1 82 57-145 12-93 (101)
99 2ek1_A RNA-binding protein 12; 99.6 3.4E-15 1.2E-19 133.4 7.5 83 57-142 12-94 (95)
100 1why_A Hypothetical protein ri 99.6 1.4E-14 4.7E-19 130.3 11.5 77 58-143 15-93 (97)
101 2rs2_A Musashi-1, RNA-binding 99.6 1.2E-14 4E-19 134.1 11.2 85 56-144 21-105 (109)
102 2la4_A Nuclear and cytoplasmic 99.6 6.7E-15 2.3E-19 133.2 9.2 77 57-142 24-100 (101)
103 1x4c_A Splicing factor, argini 99.6 4.4E-14 1.5E-18 129.8 14.8 77 58-144 13-94 (108)
104 1x4g_A Nucleolysin TIAR; struc 99.6 1.4E-14 4.7E-19 133.2 11.4 80 57-145 22-101 (109)
105 1whx_A Hypothetical protein ri 99.6 5.7E-15 1.9E-19 136.8 8.7 79 58-145 8-86 (111)
106 2cpj_A Non-POU domain-containi 99.6 2.4E-14 8.4E-19 129.1 12.6 78 58-144 13-90 (99)
107 1x5o_A RNA binding motif, sing 99.6 2.8E-14 9.4E-19 132.0 13.1 83 57-143 22-112 (114)
108 2dgu_A Heterogeneous nuclear r 99.6 3.3E-14 1.1E-18 129.3 13.2 77 58-145 9-85 (103)
109 2j76_E EIF-4B, EIF4B, eukaryot 99.6 3.6E-15 1.2E-19 135.2 6.8 82 57-143 16-98 (100)
110 2nlw_A Eukaryotic translation 99.6 1.1E-14 3.7E-19 133.3 10.0 81 58-143 13-100 (105)
111 1rk8_A CG8781-PA, CG8781-PA pr 99.6 1.2E-14 4E-19 144.0 11.0 85 57-144 69-153 (165)
112 2dnq_A RNA-binding protein 4B; 99.5 2.4E-14 8.1E-19 126.9 11.7 77 58-145 6-82 (90)
113 2mss_A Protein (musashi1); RNA 99.5 4.5E-15 1.5E-19 126.8 6.5 75 62-140 1-75 (75)
114 1nu4_A U1A RNA binding domain; 99.5 7.5E-15 2.6E-19 131.6 8.1 81 58-144 6-90 (97)
115 2jvr_A Nucleolar protein 3; RN 99.5 1.3E-14 4.3E-19 134.8 9.3 78 58-142 26-104 (111)
116 2lea_A Serine/arginine-rich sp 99.5 6.3E-15 2.2E-19 141.4 7.5 85 58-145 45-129 (135)
117 2e5j_A Methenyltetrahydrofolat 99.5 1.5E-14 5.2E-19 130.1 9.5 78 58-143 17-94 (97)
118 1uaw_A Mouse-musashi-1; RNP-ty 99.5 6.3E-15 2.1E-19 126.3 6.3 76 61-140 1-76 (77)
119 2cpy_A RNA-binding protein 12; 99.5 2.1E-14 7.1E-19 133.4 10.3 82 58-144 13-95 (114)
120 2dnp_A RNA-binding protein 14; 99.5 3.2E-14 1.1E-18 126.1 10.9 77 57-144 6-82 (90)
121 2jvo_A Nucleolar protein 3; nu 99.5 2.4E-14 8.2E-19 132.0 10.4 79 55-144 26-104 (108)
122 2jwn_A Embryonic polyadenylate 99.5 1.7E-14 5.8E-19 135.5 9.5 81 59-143 35-115 (124)
123 2fc8_A NCL protein; structure 99.5 5.4E-14 1.8E-18 127.4 12.2 82 57-144 12-93 (102)
124 2cqh_A IGF-II mRNA-binding pro 99.5 2E-14 7E-19 128.0 9.2 77 58-144 6-84 (93)
125 1x5p_A Negative elongation fac 99.5 1.2E-13 4.2E-18 124.1 14.1 76 58-144 13-88 (97)
126 1wg5_A Heterogeneous nuclear r 99.5 5.8E-14 2E-18 128.2 11.9 83 58-145 13-96 (104)
127 3lqv_A PRE-mRNA branch site pr 99.5 2.8E-14 9.6E-19 132.2 9.9 80 58-143 6-85 (115)
128 2hvz_A Splicing factor, argini 99.5 3.4E-14 1.2E-18 128.6 10.1 76 61-144 1-76 (101)
129 2xnq_A Nuclear polyadenylated 99.5 5.9E-14 2E-18 126.7 11.3 76 57-143 19-95 (97)
130 2cpd_A Apobec-1 stimulating pr 99.5 1.6E-13 5.6E-18 123.7 14.1 77 57-144 12-90 (99)
131 2db1_A Heterogeneous nuclear r 99.5 3.3E-14 1.1E-18 133.1 9.8 81 58-143 15-98 (118)
132 2cpx_A Hypothetical protein FL 99.5 3.9E-14 1.3E-18 131.1 10.0 80 58-144 23-106 (115)
133 1wel_A RNA-binding protein 12; 99.5 1.6E-14 5.6E-19 136.0 7.4 82 58-143 23-104 (124)
134 2xs2_A Deleted in azoospermia- 99.5 1.6E-14 5.3E-19 131.0 6.5 82 57-144 6-87 (102)
135 2krb_A Eukaryotic translation 99.5 1.6E-14 5.5E-19 125.6 6.2 73 60-137 1-80 (81)
136 1fj7_A Nucleolin RBD1, protein 99.5 1.2E-14 4.1E-19 131.6 5.5 82 58-144 15-96 (101)
137 2kvi_A Nuclear polyadenylated 99.5 4.5E-14 1.5E-18 126.8 8.8 77 58-145 8-85 (96)
138 3q2s_C Cleavage and polyadenyl 99.5 2.6E-14 8.9E-19 149.3 8.3 82 59-143 67-150 (229)
139 1wf1_A RNA-binding protein RAL 99.5 2.1E-13 7.3E-18 125.4 13.4 76 57-143 24-100 (110)
140 1wez_A HnRNP H', FTP-3, hetero 99.5 1E-13 3.5E-18 126.5 10.7 80 58-143 13-92 (102)
141 1wg1_A KIAA1579 protein, homol 99.5 1.2E-13 4.3E-18 121.9 10.8 78 58-145 3-80 (88)
142 2cq2_A Hypothetical protein LO 99.5 5E-14 1.7E-18 131.2 8.5 79 58-145 23-108 (114)
143 3pgw_S U1-70K; protein-RNA com 99.5 1.5E-13 5.2E-18 156.6 14.3 84 59-145 101-184 (437)
144 2f3j_A RNA and export factor b 99.5 5.5E-14 1.9E-18 141.1 9.4 85 57-145 85-169 (177)
145 2e5g_A U6 snRNA-specific termi 99.5 1.3E-13 4.6E-18 123.2 10.9 77 59-144 7-83 (94)
146 1fjc_A Nucleolin RBD2, protein 99.5 8.8E-14 3E-18 124.5 9.6 80 57-144 13-92 (96)
147 4f02_A Polyadenylate-binding p 99.5 9.3E-14 3.2E-18 142.8 11.0 81 59-142 14-94 (213)
148 2qfj_A FBP-interacting repress 99.5 1.2E-13 4.1E-18 140.8 11.4 85 58-145 123-207 (216)
149 2hgl_A HNRPF protein, heteroge 99.5 6.5E-14 2.2E-18 134.6 8.8 81 57-142 41-124 (136)
150 2i2y_A Fusion protein consists 99.5 1.1E-13 3.8E-18 134.5 10.3 79 57-143 70-148 (150)
151 3egn_A RNA-binding protein 40; 99.5 7.9E-14 2.7E-18 134.4 9.2 86 59-144 44-131 (143)
152 2lcw_A RNA-binding protein FUS 99.2 4E-15 1.4E-19 138.4 0.0 85 57-144 4-96 (116)
153 2lmi_A GRSF-1, G-rich sequence 99.5 3.2E-14 1.1E-18 130.6 6.0 81 58-143 9-92 (107)
154 2e44_A Insulin-like growth fac 99.5 1.3E-13 4.6E-18 123.3 9.6 79 59-144 14-93 (96)
155 1iqt_A AUF1, heterogeneous nuc 99.5 2.5E-14 8.6E-19 122.0 4.6 75 62-140 1-75 (75)
156 3md3_A Nuclear and cytoplasmic 99.5 2.9E-13 1E-17 131.6 12.4 83 57-142 84-166 (166)
157 3zzy_A Polypyrimidine tract-bi 99.4 2.8E-13 9.4E-18 129.0 10.9 78 60-145 28-108 (130)
158 3d2w_A TAR DNA-binding protein 99.4 3.1E-13 1.1E-17 120.1 10.1 75 57-143 8-84 (89)
159 2dnn_A RNA-binding protein 12; 99.4 2.9E-13 1E-17 125.2 10.1 78 59-142 15-92 (109)
160 1fxl_A Paraneoplastic encephal 99.4 3.7E-13 1.3E-17 131.0 11.1 80 60-142 2-81 (167)
161 1sjr_A Polypyrimidine tract-bi 99.4 2.5E-13 8.6E-18 134.0 9.9 79 60-145 46-126 (164)
162 2e5i_A Heterogeneous nuclear r 99.4 6.4E-13 2.2E-17 125.7 12.2 76 61-145 26-104 (124)
163 3tyt_A Heterogeneous nuclear r 99.4 4.1E-13 1.4E-17 137.8 11.3 80 58-145 2-82 (205)
164 1b7f_A Protein (SXL-lethal pro 99.4 3.4E-13 1.2E-17 131.8 10.1 82 59-143 2-83 (168)
165 2diu_A KIAA0430 protein; struc 99.4 3.6E-13 1.2E-17 120.2 8.6 74 58-144 7-85 (96)
166 2bz2_A Negative elongation fac 99.4 4.5E-13 1.5E-17 126.1 9.7 76 58-144 37-112 (121)
167 3u1l_A PRE-mRNA-splicing facto 99.4 2.6E-13 8.9E-18 142.2 8.3 81 57-146 131-232 (240)
168 2j8a_A Histone-lysine N-methyl 99.4 4.4E-13 1.5E-17 126.2 8.1 78 61-141 3-94 (136)
169 3beg_B Splicing factor, argini 99.4 5.8E-13 2E-17 123.9 8.7 74 59-142 15-93 (115)
170 2g4b_A Splicing factor U2AF 65 99.4 8.7E-13 3E-17 129.5 10.5 79 59-140 93-171 (172)
171 2cjk_A Nuclear polyadenylated 99.4 4.6E-13 1.6E-17 130.8 8.4 81 59-143 86-166 (167)
172 1l3k_A Heterogeneous nuclear r 99.4 9.1E-13 3.1E-17 132.1 10.8 83 57-143 10-92 (196)
173 2yh0_A Splicing factor U2AF 65 99.4 1.2E-12 4.1E-17 131.5 11.5 84 58-144 112-195 (198)
174 1wf0_A TDP-43, TAR DNA-binding 99.4 6.9E-13 2.4E-17 116.9 8.2 77 58-144 3-79 (88)
175 3pgw_A U1-A; protein-RNA compl 99.4 6.2E-12 2.1E-16 134.1 17.1 81 58-144 7-91 (282)
176 2hgn_A Heterogeneous nuclear r 99.4 2E-13 6.7E-18 131.8 4.8 81 58-144 44-124 (139)
177 2hzc_A Splicing factor U2AF 65 99.4 1E-12 3.5E-17 115.1 8.6 72 58-139 4-86 (87)
178 4f02_A Polyadenylate-binding p 99.4 1.2E-12 4E-17 134.6 10.3 80 59-143 102-181 (213)
179 2dnl_A Cytoplasmic polyadenyla 99.4 1.2E-12 4.1E-17 121.4 9.4 77 59-141 7-86 (114)
180 2hgm_A HNRPF protein, heteroge 99.4 9.2E-13 3.1E-17 125.0 7.9 79 58-142 40-120 (126)
181 1l3k_A Heterogeneous nuclear r 99.3 2.4E-12 8.2E-17 129.1 10.5 83 58-144 102-184 (196)
182 2dha_A FLJ20171 protein; RRM d 99.3 7.7E-13 2.6E-17 125.0 6.4 81 58-143 21-105 (123)
183 1b7f_A Protein (SXL-lethal pro 99.3 3.1E-12 1.1E-16 124.8 10.9 80 58-140 87-168 (168)
184 3md3_A Nuclear and cytoplasmic 99.3 3.2E-12 1.1E-16 124.1 10.8 79 61-143 1-79 (166)
185 2qfj_A FBP-interacting repress 99.3 2E-12 6.8E-17 131.7 9.6 82 59-143 27-108 (216)
186 3pgw_A U1-A; protein-RNA compl 99.3 8.5E-12 2.9E-16 133.0 13.8 79 56-142 203-282 (282)
187 1fxl_A Paraneoplastic encephal 99.3 3.6E-12 1.2E-16 123.9 9.4 80 58-140 86-167 (167)
188 3nmr_A Cugbp ELAV-like family 99.3 4.8E-12 1.6E-16 124.2 9.5 82 59-143 2-88 (175)
189 1fje_B Nucleolin RBD12, protei 99.3 5.7E-12 2E-16 124.3 10.0 78 58-143 97-174 (175)
190 3nmr_A Cugbp ELAV-like family 99.3 5.2E-12 1.8E-16 123.9 9.6 80 58-141 93-175 (175)
191 2cjk_A Nuclear polyadenylated 99.3 4.1E-12 1.4E-16 124.0 8.8 79 59-142 2-80 (167)
192 2pe8_A Splicing factor 45; RRM 99.3 1.2E-11 4E-16 113.6 10.7 81 59-142 7-93 (105)
193 2ghp_A U4/U6 snRNA-associated 99.3 8.4E-12 2.9E-16 133.7 10.1 83 57-143 207-291 (292)
194 2voo_A Lupus LA protein; RNA-b 99.3 1.1E-11 3.8E-16 125.9 10.4 80 59-143 108-187 (193)
195 3sde_A Paraspeckle component 1 99.2 2.3E-11 8E-16 128.8 11.8 76 58-142 20-95 (261)
196 2adc_A Polypyrimidine tract-bi 99.2 9.6E-12 3.3E-16 129.1 8.6 80 58-145 32-112 (229)
197 3smz_A Protein raver-1, ribonu 99.2 2.3E-11 7.7E-16 129.8 11.6 83 58-143 93-175 (284)
198 2dit_A HIV TAT specific factor 99.2 5.2E-11 1.8E-15 110.1 12.3 79 58-143 13-102 (112)
199 1qm9_A Polypyrimidine tract-bi 99.2 1.5E-11 5.3E-16 123.9 9.3 79 57-143 117-197 (198)
200 3smz_A Protein raver-1, ribonu 99.2 2.3E-11 7.8E-16 129.8 10.8 83 58-144 182-265 (284)
201 1qm9_A Polypyrimidine tract-bi 99.2 6.9E-11 2.4E-15 119.1 13.5 77 60-144 3-80 (198)
202 2adc_A Polypyrimidine tract-bi 99.2 2.5E-11 8.4E-16 126.0 10.0 79 57-143 148-228 (229)
203 1fje_B Nucleolin RBD12, protei 99.2 5.5E-12 1.9E-16 124.4 4.6 81 58-143 11-91 (175)
204 2g4b_A Splicing factor U2AF 65 99.2 5.4E-11 1.8E-15 116.6 9.9 75 59-143 3-88 (172)
205 3v4m_A Splicing factor U2AF 65 99.2 7.4E-11 2.5E-15 108.2 9.4 83 58-141 3-95 (105)
206 2yh0_A Splicing factor U2AF 65 99.2 9E-11 3.1E-15 117.7 10.7 76 59-144 3-89 (198)
207 2dt7_B Splicing factor 3 subun 99.2 6.2E-12 2.1E-16 110.3 1.8 56 204-260 28-83 (85)
208 3tyt_A Heterogeneous nuclear r 99.2 4.2E-11 1.4E-15 122.8 8.1 78 58-140 121-204 (205)
209 1jmt_A Splicing factor U2AF 35 99.1 2.7E-11 9.2E-16 110.9 4.5 73 64-140 19-103 (104)
210 3tht_A Alkylated DNA repair pr 99.1 5.7E-11 1.9E-15 130.7 7.6 79 57-144 15-100 (345)
211 3sde_A Paraspeckle component 1 99.1 1.5E-10 5.1E-15 122.6 9.8 81 59-143 95-179 (261)
212 2ghp_A U4/U6 snRNA-associated 99.1 1.3E-10 4.3E-15 124.5 9.2 82 59-144 116-198 (292)
213 2d9o_A DNAJ (HSP40) homolog, s 99.1 6E-10 2.1E-14 101.3 12.2 65 70-144 27-91 (100)
214 3clj_A Protein NRD1; CTD-inter 99.1 4.2E-11 1.4E-15 116.6 3.8 128 323-460 3-146 (157)
215 3ue2_A Poly(U)-binding-splicin 99.0 4.1E-10 1.4E-14 105.5 9.0 83 59-141 19-107 (118)
216 2e62_A Protein AT5G25060; CWF2 98.9 2.6E-09 8.8E-14 86.0 8.0 56 690-745 6-61 (61)
217 3s6e_A RNA-binding protein 39; 98.8 1.2E-08 4E-13 95.0 10.5 77 59-142 6-92 (114)
218 2dnr_A Synaptojanin-1; RRM dom 98.7 2.8E-08 9.7E-13 87.9 8.2 74 58-143 5-86 (91)
219 1owx_A Lupus LA protein, SS-B, 98.7 6.2E-08 2.1E-12 90.8 9.5 73 58-139 16-92 (121)
220 1x4p_A Putative splicing facto 98.6 1.8E-09 6.2E-14 87.3 -1.7 55 205-261 5-59 (66)
221 1ufw_A Synaptojanin 2; RNP dom 98.4 4.5E-07 1.5E-11 80.7 7.6 71 57-139 12-91 (95)
222 3dxb_A Thioredoxin N-terminall 98.3 6.1E-07 2.1E-11 92.3 7.3 70 72-141 141-211 (222)
223 4dgw_B PRE-mRNA-splicing facto 97.9 1.7E-06 5.8E-11 83.6 0.9 51 207-260 7-57 (152)
224 1wey_A Calcipressin 1; structu 97.7 0.00011 3.8E-09 66.4 9.5 77 60-145 5-86 (104)
225 2l9w_A U4/U6 snRNA-associated- 97.6 0.00025 8.5E-09 64.5 8.9 70 60-138 21-95 (117)
226 1uw4_A UPF3X; nonsense mediate 95.6 0.077 2.6E-06 46.9 10.2 83 61-144 2-89 (91)
227 2dhx_A Poly (ADP-ribose) polym 94.9 0.13 4.3E-06 46.4 9.4 68 59-138 7-79 (104)
228 1whv_A Poly(A)-specific ribonu 94.9 0.084 2.9E-06 47.1 8.0 58 58-126 13-70 (100)
229 3ctr_A Poly(A)-specific ribonu 94.5 0.033 1.1E-06 49.8 4.6 54 62-126 7-60 (101)
230 1wwh_A Nucleoporin 35, nucleop 94.3 0.13 4.4E-06 47.7 8.2 70 59-139 23-93 (119)
231 1h1j_S THO1 protein; SAP domai 93.5 0.098 3.3E-06 41.2 4.9 40 511-550 4-43 (51)
232 2kvu_A MKL/myocardin-like prot 93.3 0.098 3.4E-06 44.3 4.9 41 510-550 24-64 (75)
233 2do1_A Nuclear protein HCC-1; 91.4 0.21 7.1E-06 39.9 4.3 39 511-549 9-47 (55)
234 1zrj_A E1B-55KDA-associated pr 90.8 0.3 1E-05 38.3 4.7 36 511-546 9-44 (50)
235 2l08_A Regulator of nonsense t 89.6 0.72 2.5E-05 41.1 6.8 80 60-140 9-93 (97)
236 2i2y_A Fusion protein consists 88.8 0.17 5.7E-06 48.1 2.2 41 102-143 10-51 (150)
237 3p3d_A Nucleoporin 53; structu 88.3 0.4 1.4E-05 45.1 4.3 79 60-140 7-96 (132)
238 3pq1_A Poly(A) RNA polymerase; 86.7 0.33 1.1E-05 55.1 3.4 54 61-123 54-107 (464)
239 2kn4_A Immunoglobulin G-bindin 85.3 0.67 2.3E-05 44.1 4.3 37 89-130 2-38 (158)
240 2rnn_A E3 SUMO-protein ligase 83.6 1.4 4.7E-05 40.3 5.2 41 507-547 32-72 (114)
241 3d45_A Poly(A)-specific ribonu 64.3 12 0.00042 42.8 7.9 54 61-126 441-494 (507)
242 1jjr_A KU70, thyroid autoantig 62.9 5.4 0.00018 38.3 3.8 37 509-545 58-94 (151)
243 4f25_A Polyadenylate-binding p 35.0 8.1 0.00028 34.6 0.0 19 58-76 95-113 (115)
244 2jak_A Serine/threonine-protei 30.5 1.7E+02 0.0058 32.2 9.6 111 317-446 250-367 (392)
245 2do5_A Splicing factor 3B subu 29.8 58 0.002 25.2 3.9 34 517-553 13-46 (58)
246 2rno_A Putative DNA-binding pr 25.6 1.2E+02 0.004 26.9 5.7 37 510-546 15-51 (110)
247 1jjr_A KU70, thyroid autoantig 23.4 17 0.00058 34.8 0.0 35 511-545 114-148 (151)
248 2g0c_A ATP-dependent RNA helic 23.2 1.2E+02 0.004 24.8 5.2 68 62-141 2-75 (76)
249 1juq_A ADP-ribosylation factor 23.1 1.4E+02 0.0049 28.8 6.6 84 352-445 46-130 (171)
250 3zyq_A Hepatocyte growth facto 22.5 2E+02 0.0068 29.0 7.9 82 349-444 38-119 (226)
251 3skq_A Mitochondrial distribut 22.2 84 0.0029 32.5 4.8 40 512-551 144-185 (249)
252 1mhq_A ADP-ribosylation factor 20.4 2.7E+02 0.0093 26.1 7.8 84 351-444 33-117 (148)
No 1
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A*
Probab=99.93 E-value=5.6e-26 Score=220.48 Aligned_cols=129 Identities=17% Similarity=0.302 Sum_probs=118.3
Q ss_pred HHHHHHHHHhcccCHHHHHHHHHHHHhccccHHHHHHHHHHHhcccCCCcccchheeeeehhhhccCCCCCCCccchHHH
Q 003091 323 RDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTK 402 (848)
Q Consensus 323 ~~~l~~lL~~Lt~tr~sI~~~~~w~l~h~~~a~eiv~~l~~~l~~~~~~~~~KL~~LYLinDIL~ns~~~~~~a~~yr~~ 402 (848)
.+.|..+|+.|+.|+++|++||.|||+|..+|.+||++|.++|....+++.+||++|||+|||||||. +++++.|+.+
T Consensus 5 ~~~l~~kL~~L~~sq~sIq~~s~W~l~h~~~a~~iv~~~~~~l~~~~~~~~kKL~~lYL~NDVlqnsk--~k~~~~f~~~ 82 (142)
T 2km4_A 5 SEQFTTKLNTLEDSQESISSASKWLLLQYRDAPKVAEMWKEYMLRPSVNTRRKLLGLYLMNHVVQQAK--GQKIIQFQDS 82 (142)
T ss_dssp HHHHHHHHHTCCSCHHHHHHHHHHHHTCGGGHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHG--GGTCCHHHHH
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCCccceehhhhhHHHHHHHHh--hcCchHHHHH
Confidence 46899999999999999999999999999999999999999998877788999999999999999997 6677899999
Q ss_pred HHHhhHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHhhccCccCcHHHHHHHHHHhcc
Q 003091 403 FEATLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWSDWFLFSDAYVNGLRATFLR 461 (848)
Q Consensus 403 fe~~Lp~if~~l~~~~~~~~~r~~ae~~k~kV~~vL~iWe~~~vf~~~~i~~L~~~f~~ 461 (848)
|+++||.+|.++.. .. .++.+++|.+||++|++|+||+.++|..|++.|.+
T Consensus 83 F~~~L~~~~~~~~~---~~-----~~~~~~kv~rvl~iWeer~vf~~~~i~~L~~~l~~ 133 (142)
T 2km4_A 83 FGKVAAEVLGRINQ---EF-----PRDLKKKLSRVVNILKERNIFSKQVVNDIERSLAA 133 (142)
T ss_dssp HHHTHHHHHHHHHH---HS-----CHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---cC-----CHHHHHHHHHHHHHhhccCCcCHHHHHHHHHHHHh
Confidence 99999999976643 21 46889999999999999999999999999999865
No 2
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=99.91 E-value=5.2e-25 Score=211.86 Aligned_cols=128 Identities=20% Similarity=0.368 Sum_probs=112.2
Q ss_pred HHHHHHHHHHhcccCHHHHHHHHHHHHhccccHHHHHHHHHHHhcccCCCcccchheeeeehhhhccCCCCCCCccchHH
Q 003091 322 QRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRT 401 (848)
Q Consensus 322 ~~~~l~~lL~~Lt~tr~sI~~~~~w~l~h~~~a~eiv~~l~~~l~~~~~~~~~KL~~LYLinDIL~ns~~~~~~a~~yr~ 401 (848)
..+.|+.+|+.|++|+++|+++|.|||+|..+|.+||++|.++|... +.++||++|||||||||||. ++++.|+.
T Consensus 5 ~~~~l~~~L~~L~~s~~sI~~~s~w~l~~~~~a~~iv~~i~~~l~~~--~~~~KL~~LYLindIl~ns~---~~~~~y~~ 79 (135)
T 4fu3_A 5 SESALEKKLSELSNSQQSVQTLSLWLIHHRKHAGPIVSVWHRELRKA--KSNRKLTFLYLANDVIQNSK---RKGPEFTR 79 (135)
T ss_dssp CHHHHHHHHHHCCSSTTHHHHHHHHHHHTGGGHHHHHHHHHHHHHHS--CTTTHHHHHHHHHHHHHHHT---TTCSHHHH
T ss_pred CHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHHH---hcCHHHHH
Confidence 35789999999999999999999999999999999999999999653 46799999999999999996 44678999
Q ss_pred HHHHhhHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHhhccCccCcHHHHHHHHHHhccC
Q 003091 402 KFEATLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWSDWFLFSDAYVNGLRATFLRS 462 (848)
Q Consensus 402 ~fe~~Lp~if~~l~~~~~~~~~r~~ae~~k~kV~~vL~iWe~~~vf~~~~i~~L~~~f~~~ 462 (848)
.|+++||.+|.++.... .++++++|.+||++|++|.||++++|.+|+..|.+.
T Consensus 80 ~f~~~l~~~~~~~~~~~--------~~~~k~kl~kll~iW~~r~vf~~~~i~~L~~~l~~~ 132 (135)
T 4fu3_A 80 EFESVLVDAFSHVAREA--------DEGCKKPLERLLNIWQERSVYGGEFIQQLKLSMEDS 132 (135)
T ss_dssp HHHTTHHHHHHHHHHHH--------HTTSSHHHHHHHHHHHHTTSSCHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHhCC
Confidence 99999999998765322 346789999999999999999999999999998654
No 3
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=99.90 E-value=1.4e-24 Score=208.21 Aligned_cols=125 Identities=18% Similarity=0.375 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHhcccCHHHHHHHHHHHHhccccHHHHHHHHHHHhcccCCCcccchheeeeehhhhccCCCCCCCccchH
Q 003091 321 SQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYR 400 (848)
Q Consensus 321 ~~~~~l~~lL~~Lt~tr~sI~~~~~w~l~h~~~a~eiv~~l~~~l~~~~~~~~~KL~~LYLinDIL~ns~~~~~~a~~yr 400 (848)
...+.|+.+|+.|++|+++|++++.|||+|..+|.+||++|.+.|.. ++.++||++|||||||||||. +++++.|+
T Consensus 5 ~~e~~l~~~L~~L~~s~~sI~~~s~w~l~h~~~a~~Iv~~i~~~l~~--~~~~~KL~~LYL~ndIl~ns~--~~~~~~f~ 80 (132)
T 4flb_A 5 ALESSLDRKFQSVTNTMESIQGLSSWCIENKKHHSTIVYHWMKWLRR--SAYPHRLNLFYLANDVIQNCK--RKNAIIFR 80 (132)
T ss_dssp HHHHHHHHHHHHCCSSHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHTT--TTTCTHHH
T ss_pred HHHHHHHHHHHHCcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CChhhHHHHHHHHHHHHHHhc--ccChHHHH
Confidence 45678999999999999999999999999999999999999999854 568899999999999999997 67889999
Q ss_pred HHHHHhhHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHhhccCccCcHHHHHHHHHHhc
Q 003091 401 TKFEATLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWSDWFLFSDAYVNGLRATFL 460 (848)
Q Consensus 401 ~~fe~~Lp~if~~l~~~~~~~~~r~~ae~~k~kV~~vL~iWe~~~vf~~~~i~~L~~~f~ 460 (848)
..|+++||.+|.++ ..++++++|.+||++|++|.|||+++|.+|++.+.
T Consensus 81 ~~f~~~l~~~~~~~-----------~~~~~~~kl~~ll~iW~~r~vf~~~~i~~L~~~L~ 129 (132)
T 4flb_A 81 ESFADVLPEAAALV-----------KDPSVSKSVERIFKIWEDRNVYPEEMIVALREALS 129 (132)
T ss_dssp HHHHTTHHHHHHTT-----------CSTTTHHHHHHHHHHHHHHTSSCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh-----------CCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHh
Confidence 99999999998653 23578999999999999999999999999999875
No 4
>1x4o_A Splicing factor 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.217.1.1
Probab=99.80 E-value=4e-21 Score=166.60 Aligned_cols=72 Identities=29% Similarity=0.527 Sum_probs=68.1
Q ss_pred CCcccCCCCchhhhhHHHHHHHHHhhccHHHHHHHHHhcCCCCcccccccCCCCCcceeeEEeeeeccCCcc
Q 003091 195 PDIMVIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQGDTL 266 (848)
Q Consensus 195 ~~i~v~~P~d~~~~~~Id~~a~~V~~~G~~FE~~l~~~e~~np~f~FL~d~~s~~h~YYrwkl~s~~~gd~~ 266 (848)
+.+.|.||.|+.++.+||+||.||+++|++||++||+++++||+|+||+|..+++|.||+|+|+++.+|+..
T Consensus 5 ~~~~v~pP~d~~~~~iIdktA~fVaknG~~fE~~l~~~~~~Np~F~FL~d~~~~~h~YYr~kl~e~~~g~~~ 76 (78)
T 1x4o_A 5 SSGKVSPPEDEEAKNLAEKLARFIADGGPEVETIALQNNRENQAFSFLYDPNSQGYRYYRQKLDEFRKSGPS 76 (78)
T ss_dssp CCSCSCCCSCHHHHHHHHHHHHHHHHSCTTHHHHHHHHHHHCSSTTTTTCSSSSHHHHHHHHHHHHHCCCCC
T ss_pred CCCCCcCcCCHHHHHHHHHHHHHHHHcCHHHHHHHHHhcCCCCCCeecCCCCCCCcHHHHHHHHHHHhcCCC
Confidence 456789999999999999999999999999999999999999999999999999999999999999998753
No 5
>1ug0_A Splicing factor 4; SURP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: a.217.1.1
Probab=99.77 E-value=2e-20 Score=165.78 Aligned_cols=71 Identities=35% Similarity=0.604 Sum_probs=67.5
Q ss_pred CcccCCCCchhhhhHHHHHHHHHhhccHHHHHHHHHhcCCCCcccccccCCCCCcceeeEEeeeeccCCcc
Q 003091 196 DIMVIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQGDTL 266 (848)
Q Consensus 196 ~i~v~~P~d~~~~~~Id~~a~~V~~~G~~FE~~l~~~e~~np~f~FL~d~~s~~h~YYrwkl~s~~~gd~~ 266 (848)
.|.|.||.|+.++.+||+||.||+++|++||++||+++++||+|+||++..+++|.||+|+|+++.+|++.
T Consensus 16 ~v~v~pP~d~~~~~iIdktA~fVaknG~~FE~~l~~~e~~NpkF~FL~~~~~~~h~YYr~kl~e~~~g~~~ 86 (88)
T 1ug0_A 16 EIKVSPPEGAETRRVIEKLARFVAEGGPELEKVAMEDYKDNPAFTFLHDKNSREFLYYRRKVAEIRKSGPS 86 (88)
T ss_dssp TSCCSSGGGHHHHHHHHHHHHHHHHHCHHHHHHHHHHTTTCSSSHHHHCSSCHHHHHHHHHHHHHHHSCCS
T ss_pred eeeeCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHhcCCCCCCeecCCCCCCCcHHHHHHHHHHHccCCC
Confidence 47789999999999999999999999999999999999999999999987899999999999999999864
No 6
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=99.75 E-value=3.6e-18 Score=165.73 Aligned_cols=125 Identities=16% Similarity=0.311 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHhcc-cCHHHHHHHHHHHHhccccHHHHHHHHHHHhcccCCCcccchheeeeehhhhccCCCCCCCccch
Q 003091 321 SQRDEFEDMLRALT-LERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAY 399 (848)
Q Consensus 321 ~~~~~l~~lL~~Lt-~tr~sI~~~~~w~l~h~~~a~eiv~~l~~~l~~~~~~~~~KL~~LYLinDIL~ns~~~~~~a~~y 399 (848)
+..+.|...|..|+ .++..|+.++.||++|..+|..||++|.+++. .++..+||..|||++||++||. ..|
T Consensus 7 ~~~~~f~~~L~~L~~nSk~~I~~LT~~a~~~~~~a~~Iv~~i~~~i~--k~~p~~KL~~LYL~DsIvkN~g------~~y 78 (144)
T 1sz9_A 7 VIVKDFNSILEELTFNSRPIITTLTKLAEENISCAQYFVDAIESRIE--KCMPKQKLYAFYALDSICKNVG------SPY 78 (144)
T ss_dssp HHHHHHHHHHTTCSSCCHHHHHHHHHHHHHTGGGHHHHHHHHHHHHH--HSCHHHHHHHHHHHHHHHHHTC------TTH
T ss_pred HHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCCHhhHHHHHHHHHHHHHhcc------chH
Confidence 45688999999998 99999999999999999999999999999996 4678999999999999999986 259
Q ss_pred HHHHHHhhHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHhhccC-----ccCcHHHHHHHHHHhcc
Q 003091 400 RTKFEATLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWSDW-----FLFSDAYVNGLRATFLR 461 (848)
Q Consensus 400 r~~fe~~Lp~if~~l~~~~~~~~~r~~ae~~k~kV~~vL~iWe~~-----~vf~~~~i~~L~~~f~~ 461 (848)
...|++.|+.+|.+ +|..+ .+..|.+|.+||++|+++ .|||+++|..|++.+..
T Consensus 79 ~~~F~~~l~~~f~~---~~~~~-----d~~~r~k~~rL~~~W~~~~~~~~~vF~~~~l~~i~~~l~~ 137 (144)
T 1sz9_A 79 TIYFSRNLFNLYKR---TYLLV-----DNTTRTKLINMFKLWLNPNDTGLPLFEGSALEKIEQFLIK 137 (144)
T ss_dssp HHHHHTTHHHHHHH---HHHTS-----CHHHHHHHHHHHHHHTSGGGCSSCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---HHHhC-----CHHHHHHHHHHHHHHhCcccCCCCCCCHHHHHHHHHHHHh
Confidence 99999999999976 44433 479999999999999999 99999999999998864
No 7
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.74 E-value=4.7e-18 Score=154.51 Aligned_cols=83 Identities=22% Similarity=0.393 Sum_probs=78.3
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEE
Q 003091 57 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 136 (848)
Q Consensus 57 d~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~ 136 (848)
-..+|+|||+|||+++|+++|+++|++||.|.+|+|+ .+..+|+++|||||+|.+.++|.+|+..|||..|+|+.|+
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~---~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~ 92 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLI---RDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIK 92 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEE---ECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEee---ecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 3457899999999999999999999999999999999 4778899999999999999999999999999999999999
Q ss_pred EEeccC
Q 003091 137 IGWGKS 142 (848)
Q Consensus 137 V~~ak~ 142 (848)
|.||+|
T Consensus 93 V~~AkP 98 (99)
T 4fxv_A 93 VSYARP 98 (99)
T ss_dssp EEECCB
T ss_pred EEEeeC
Confidence 999975
No 8
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.67 E-value=5.5e-16 Score=143.79 Aligned_cols=88 Identities=22% Similarity=0.481 Sum_probs=80.7
Q ss_pred CCCCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEE
Q 003091 56 GDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYEL 135 (848)
Q Consensus 56 ~d~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L 135 (848)
.....++|||+|||..+++++|+++|++||.|..|+|+. +..++.++|||||+|.+.++|.+|+..|||..|+|+.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVK---DMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 87 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE---CTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---cCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 345678999999999999999999999999999999994 66688999999999999999999999999999999999
Q ss_pred EEEeccCCCCC
Q 003091 136 KIGWGKSVALP 146 (848)
Q Consensus 136 ~V~~ak~~~~p 146 (848)
+|.|+++...+
T Consensus 88 ~V~~a~~~~~~ 98 (115)
T 2dgo_A 88 RTNWATRKPPA 98 (115)
T ss_dssp EEEESSCCCCC
T ss_pred EEEEccCCCCC
Confidence 99999876543
No 9
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.67 E-value=1.8e-16 Score=146.92 Aligned_cols=83 Identities=14% Similarity=0.201 Sum_probs=78.1
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEE
Q 003091 58 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 137 (848)
Q Consensus 58 ~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V 137 (848)
++.++|||+|||+++++++|.++|++||.|.+|+|+ .+..+++++|||||+|.+.++|++|+..|||..|+|+.|+|
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~---~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V 80 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEIL---LHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHA 80 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEE---ECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEE---ECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 457899999999999999999999999999999999 47788999999999999999999999999999999999999
Q ss_pred EeccCC
Q 003091 138 GWGKSV 143 (848)
Q Consensus 138 ~~ak~~ 143 (848)
.||...
T Consensus 81 ~~a~~~ 86 (110)
T 3s8s_A 81 QLDIKG 86 (110)
T ss_dssp EECSTT
T ss_pred EECCCC
Confidence 998643
No 10
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=99.67 E-value=3.4e-17 Score=159.17 Aligned_cols=129 Identities=15% Similarity=0.295 Sum_probs=110.3
Q ss_pred HHHHHHHHHHhc-----ccCHHHHHHHHHHHHhccccHHHHHHHHHHHhcccCCCcccchheeeeehhhhccCCCCCC-C
Q 003091 322 QRDEFEDMLRAL-----TLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVK-N 395 (848)
Q Consensus 322 ~~~~l~~lL~~L-----t~tr~sI~~~~~w~l~h~~~a~eiv~~l~~~l~~~~~~~~~KL~~LYLinDIL~ns~~~~~-~ 395 (848)
..++|+..|..| ..++.+|+.++.||++|..++..||++|.+.+.. ++..+||..|||+|||++|+..... .
T Consensus 3 ~v~~f~~~L~~L~~~k~~~S~~~I~~LT~~a~~~~~~~~~IV~~~~~~i~k--~~~~~KL~~LYL~DsIvrn~~~k~~~~ 80 (145)
T 3d9j_A 3 AVKTFNSELYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQK--CKPEYKVPGLYVIDSIVRQSRHQFGQE 80 (145)
T ss_dssp HHHHHHHHHHGGGGSCSSCCHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHH--SCGGGHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCccceeehhhhhHHHHHHhhhhcCCc
Confidence 468899999999 4578999999999999999999999999999965 4678999999999999999973211 1
Q ss_pred ccchHHHHHHhhHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHhhccCccCcHHHHHHHHHHhcc
Q 003091 396 ASAYRTKFEATLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWSDWFLFSDAYVNGLRATFLR 461 (848)
Q Consensus 396 a~~yr~~fe~~Lp~if~~l~~~~~~~~~r~~ae~~k~kV~~vL~iWe~~~vf~~~~i~~L~~~f~~ 461 (848)
...|...|...|+.+|.+ +|. + .++.+.+|.+||++|+++.||++++|..|+..+.+
T Consensus 81 ~~~f~~~F~~~L~~~f~~---~~~-~-----~~~~r~kl~rLl~iW~~r~vF~~~~l~~l~~~l~~ 137 (145)
T 3d9j_A 81 KDVFAPRFSNNIISTFQN---LYR-C-----PGDDKSKIVRVLNLWQKNNVFKSEIIQPLLDMAAA 137 (145)
T ss_dssp TCSHHHHHHHHHHHHHHH---HTS-S-----CGGGHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHH---HHh-C-----CHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcC
Confidence 236999999999999963 332 1 25889999999999999999999999999998864
No 11
>2e5z_A SFRS8 protein, splicing factor, arginine/serine-rich 8; SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=9.8e-18 Score=147.87 Aligned_cols=66 Identities=30% Similarity=0.499 Sum_probs=57.9
Q ss_pred cccCCCCchhhhhHHHHHHHHHhhccHHHHHHHHHhcCCCCcccccccCCCCCcceeeEEeeeeccCCcc
Q 003091 197 IMVIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQGDTL 266 (848)
Q Consensus 197 i~v~~P~d~~~~~~Id~~a~~V~~~G~~FE~~l~~~e~~np~f~FL~d~~s~~h~YYrwkl~s~~~gd~~ 266 (848)
+.|++| ++.++.+||+||+||+++|++||++||++ +||+|+||++ .+++|.||+|||+++.+|+..
T Consensus 15 ~~ii~P-Ppdir~iIdktA~fVaknG~~FE~~i~~k--~np~F~FL~~-~~pyh~YY~~kl~e~~~~~~~ 80 (90)
T 2e5z_A 15 AAIIPP-PPDVQPVIDKLAEYVARNGLKFETSVRAK--NDQRFEFLQP-WHQYNAYYEFKKQFFLQKEGG 80 (90)
T ss_dssp CSCCCC-CTTTHHHHHHHHHHHHHSCHHHHHHHHHH--CCGGGCTTSS-SCSTHHHHHHHHHHHHHHTCC
T ss_pred CCccCC-CHHHHHHHHHHHHHHHHccHHHHHHHHHh--CCCCceeCCC-CCcccHHHHHHHHHHHhccCC
Confidence 334444 45699999999999999999999999987 8999999995 899999999999999998754
No 12
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=5.1e-16 Score=138.50 Aligned_cols=82 Identities=22% Similarity=0.489 Sum_probs=77.1
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEE
Q 003091 57 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 136 (848)
Q Consensus 57 d~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~ 136 (848)
.+..++|||+|||+.+++++|.++|++||.|..|+|+. +..++.++|||||+|.+.++|.+|+..|||..|+|+.|+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~---~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 89 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMK---DKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIK 89 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECC---CSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEe---CCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 45678999999999999999999999999999999984 667788999999999999999999999999999999999
Q ss_pred EEecc
Q 003091 137 IGWGK 141 (848)
Q Consensus 137 V~~ak 141 (848)
|.|||
T Consensus 90 v~~ak 94 (94)
T 2e5h_A 90 ASIAI 94 (94)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99986
No 13
>2e60_A SFRS8 protein, splicing factor, arginine/serine-rich 8; SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=1.7e-17 Score=150.28 Aligned_cols=68 Identities=22% Similarity=0.353 Sum_probs=63.3
Q ss_pred cccCCCCchhhhhHHHHHHHHHhhccHHHHHHHHHhcCCCCcccccccCCCCCcceeeEEeeeeccCCc
Q 003091 197 IMVIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQGDT 265 (848)
Q Consensus 197 i~v~~P~d~~~~~~Id~~a~~V~~~G~~FE~~l~~~e~~np~f~FL~d~~s~~h~YYrwkl~s~~~gd~ 265 (848)
..|.+|.|..++.|||+||.||+++|+.||++||+++.+||+|+||+ ..+++|.||+|+|+++.+|+.
T Consensus 17 ~~v~~P~~~~~~~iI~ktA~fVarnG~~FE~~l~~re~~Np~F~FL~-~~~~~h~YY~~kl~~~~~g~~ 84 (101)
T 2e60_A 17 SDVELPPTAKMHAIIERTASFVCRQGAQFEIMLKAKQARNSQFDFLR-FDHYLNPYYKFIQKAMKEGRY 84 (101)
T ss_dssp SSSCCCSSHHHHHHHHHHHHHHHHSCHHHHHHHHHHTTSCSTTGGGS-TTSTHHHHHHHHHHHHHHTSC
T ss_pred CCccCCcCHHHHHHHHHHHHHHHHhCHHHHHHHHHccccCCCCccCC-CCCCCcHHHHHHHHHHHcCCC
Confidence 45677778999999999999999999999999999999999999996 789999999999999999875
No 14
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.65 E-value=4.7e-16 Score=135.32 Aligned_cols=81 Identities=36% Similarity=0.625 Sum_probs=76.5
Q ss_pred ccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEe
Q 003091 60 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 139 (848)
Q Consensus 60 ~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V~~ 139 (848)
+++|||+|||+++++++|.++|++||.|.+|+|+. +..+++++|||||+|.+.++|.+|+..|||..|+|+.|+|.|
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~---~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 77 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMW---DMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINW 77 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEE---CTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEE---cCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEe
Confidence 46899999999999999999999999999999984 667889999999999999999999999999999999999999
Q ss_pred ccCC
Q 003091 140 GKSV 143 (848)
Q Consensus 140 ak~~ 143 (848)
|++.
T Consensus 78 a~~~ 81 (83)
T 3md1_A 78 AAKL 81 (83)
T ss_dssp CCCC
T ss_pred cCcC
Confidence 9865
No 15
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.3e-15 Score=141.55 Aligned_cols=88 Identities=22% Similarity=0.363 Sum_probs=80.4
Q ss_pred CCCCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEE
Q 003091 56 GDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYEL 135 (848)
Q Consensus 56 ~d~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L 135 (848)
.+...++|||+|||+.+++++|+++|++||.|.+|+|+. +..+++++|||||+|.+.++|++|+..|++ .|.|+.|
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l 88 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVIT---DRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKA 88 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESC---CSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEE---cCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEE
Confidence 456688999999999999999999999999999999994 677889999999999999999999999998 8999999
Q ss_pred EEEeccCCCCCC
Q 003091 136 KIGWGKSVALPS 147 (848)
Q Consensus 136 ~V~~ak~~~~p~ 147 (848)
+|.||+....|.
T Consensus 89 ~V~~a~~~~~~~ 100 (116)
T 2cqd_A 89 NVNLAYLGAKPR 100 (116)
T ss_dssp EEEESTTTCCCC
T ss_pred EEEEcccCCCcc
Confidence 999998765543
No 16
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.65 E-value=1.4e-16 Score=142.43 Aligned_cols=82 Identities=13% Similarity=0.235 Sum_probs=75.3
Q ss_pred ccEEEEecCCCCCCHHHHHHHhccCC-CeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcC-CceecCeEEEE
Q 003091 60 TTNLYVGNLSPQVDENFLLRTFGRFG-PIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQ-GVVVYEYELKI 137 (848)
Q Consensus 60 ~t~LfVgNLp~~vte~~L~~~F~~fG-~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~ln-G~~i~G~~L~V 137 (848)
+.+|||+|||+++|+++|+++|++|| .|.+|+|+ .+..+|+++|||||+|.+.++|.+|+..|+ +..|+|+.|+|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~---~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V 77 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLM---RNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSM 77 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSS---SCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEE---ecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEE
Confidence 46899999999999999999999999 79999999 477899999999999999999999999874 66799999999
Q ss_pred EeccCCC
Q 003091 138 GWGKSVA 144 (848)
Q Consensus 138 ~~ak~~~ 144 (848)
.||++.+
T Consensus 78 ~~a~~~~ 84 (91)
T 2lxi_A 78 HYSDPKP 84 (91)
T ss_dssp ECCCSCC
T ss_pred EEcCCCC
Confidence 9998664
No 17
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.65 E-value=4e-16 Score=137.03 Aligned_cols=83 Identities=23% Similarity=0.514 Sum_probs=75.7
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEE
Q 003091 58 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 137 (848)
Q Consensus 58 ~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V 137 (848)
+..++|||+|||.++++++|+++|++||.|.+|+|+. +..++.++|||||+|.+.++|.+|+..|||..++|+.|+|
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 80 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVK---DMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 80 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE---CTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEe---cCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 3568999999999999999999999999999999994 6678899999999999999999999999999999999999
Q ss_pred EeccCC
Q 003091 138 GWGKSV 143 (848)
Q Consensus 138 ~~ak~~ 143 (848)
.||++.
T Consensus 81 ~~a~~k 86 (87)
T 3bs9_A 81 NWATRK 86 (87)
T ss_dssp EEEC--
T ss_pred EecCCC
Confidence 999865
No 18
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=8.6e-16 Score=137.30 Aligned_cols=84 Identities=23% Similarity=0.467 Sum_probs=78.6
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEE
Q 003091 58 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 137 (848)
Q Consensus 58 ~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V 137 (848)
+.+++|||+|||..+++++|.++|++||.|..|+|+. +..+++++|||||+|.+.++|.+|+..|||..|+|+.|+|
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~---~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 79 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMK---DSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRV 79 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEC---CSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEee---cCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEE
Confidence 4578999999999999999999999999999999994 6678899999999999999999999999999999999999
Q ss_pred EeccCCC
Q 003091 138 GWGKSVA 144 (848)
Q Consensus 138 ~~ak~~~ 144 (848)
.|+++..
T Consensus 80 ~~a~~~~ 86 (95)
T 2dnz_A 80 GHVTERL 86 (95)
T ss_dssp EESSCCC
T ss_pred EEccccc
Confidence 9998654
No 19
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.65 E-value=1.2e-15 Score=142.18 Aligned_cols=84 Identities=29% Similarity=0.408 Sum_probs=77.7
Q ss_pred CCCCCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeE
Q 003091 55 DGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYE 134 (848)
Q Consensus 55 ~~d~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~ 134 (848)
...+..++|||+|||.++++++|+++|++||.|.+|+|+. +..+++++|||||+|.+.++|.+|+..|||..|+|+.
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~---~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 111 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFI---DKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKR 111 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECC---CSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEe---CCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 3456688999999999999999999999999999999994 6678899999999999999999999999999999999
Q ss_pred EEEEecc
Q 003091 135 LKIGWGK 141 (848)
Q Consensus 135 L~V~~ak 141 (848)
|+|.|++
T Consensus 112 l~V~~ak 118 (118)
T 2khc_A 112 LKVQLKK 118 (118)
T ss_dssp CCEEEC-
T ss_pred EEEEecC
Confidence 9999985
No 20
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=9.1e-16 Score=138.33 Aligned_cols=85 Identities=22% Similarity=0.292 Sum_probs=79.2
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEE
Q 003091 58 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 137 (848)
Q Consensus 58 ~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V 137 (848)
...++|||+|||..+++++|..+|++||.|.+|+|+. +..+++++|||||+|.+.++|.+|+..|||..|+|+.|+|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPI---DSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHV 82 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCC---CTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEe---cCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 4578999999999999999999999999999999984 6678899999999999999999999999999999999999
Q ss_pred EeccCCCC
Q 003091 138 GWGKSVAL 145 (848)
Q Consensus 138 ~~ak~~~~ 145 (848)
.|+++...
T Consensus 83 ~~a~~~~~ 90 (99)
T 1whw_A 83 LPSTIKKE 90 (99)
T ss_dssp EECCCCST
T ss_pred EEcCCCcc
Confidence 99987654
No 21
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=1.1e-15 Score=137.93 Aligned_cols=83 Identities=19% Similarity=0.427 Sum_probs=77.5
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEE
Q 003091 58 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 137 (848)
Q Consensus 58 ~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V 137 (848)
...++|||+|||..+++++|.++|++||.|..|+|+. +..+++++|||||+|.+.++|.+|+. |||..|+|+.|+|
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V 83 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIY---DAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEV 83 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECC---CTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEe---CCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEE
Confidence 4578999999999999999999999999999999994 67788999999999999999999998 9999999999999
Q ss_pred EeccCCC
Q 003091 138 GWGKSVA 144 (848)
Q Consensus 138 ~~ak~~~ 144 (848)
.|+++..
T Consensus 84 ~~a~~~~ 90 (99)
T 2dgs_A 84 KRAEPRD 90 (99)
T ss_dssp EECCCCC
T ss_pred EECCCCc
Confidence 9998654
No 22
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.64 E-value=1.2e-15 Score=141.53 Aligned_cols=85 Identities=27% Similarity=0.446 Sum_probs=79.3
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEE
Q 003091 57 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 136 (848)
Q Consensus 57 d~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~ 136 (848)
.+..++|||+|||.++++++|+++|++||.|.+|+|+. +..+++++|||||+|.+.++|.+|+..|||..|+|+.|+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 98 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFI---DKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLK 98 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEE---CSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---CCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 45678999999999999999999999999999999994 667889999999999999999999999999999999999
Q ss_pred EEeccCCC
Q 003091 137 IGWGKSVA 144 (848)
Q Consensus 137 V~~ak~~~ 144 (848)
|.|+++..
T Consensus 99 V~~a~~~~ 106 (115)
T 2cpz_A 99 VQLKRSKN 106 (115)
T ss_dssp EECCCCSC
T ss_pred EEEcCCCC
Confidence 99998664
No 23
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=7.4e-16 Score=139.68 Aligned_cols=85 Identities=28% Similarity=0.489 Sum_probs=79.1
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEE
Q 003091 58 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 137 (848)
Q Consensus 58 ~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V 137 (848)
...++|||+|||..+++++|.++|++||.|.+|+|+. +..+++++|||||+|.+.++|.+|+..|||..|+|+.|+|
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPL---DYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 86 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCC---CSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEe---cCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 4578999999999999999999999999999999984 6678899999999999999999999999999999999999
Q ss_pred EeccCCCC
Q 003091 138 GWGKSVAL 145 (848)
Q Consensus 138 ~~ak~~~~ 145 (848)
.|+++...
T Consensus 87 ~~a~~~~~ 94 (102)
T 2cqb_A 87 NLAKPMRI 94 (102)
T ss_dssp EECCCCCC
T ss_pred EeCCCCCC
Confidence 99987653
No 24
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.2e-15 Score=138.58 Aligned_cols=85 Identities=22% Similarity=0.379 Sum_probs=79.2
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEE
Q 003091 57 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 136 (848)
Q Consensus 57 d~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~ 136 (848)
....++|||+|||..+++++|.++|++||.|.+|+|+. +..++.++|||||+|.+.++|.+|+..|||..|+|+.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAK---DKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILN 88 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEE---CSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEee---cCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 34578999999999999999999999999999999994 667889999999999999999999999999999999999
Q ss_pred EEeccCCC
Q 003091 137 IGWGKSVA 144 (848)
Q Consensus 137 V~~ak~~~ 144 (848)
|.|+++..
T Consensus 89 v~~a~~~~ 96 (103)
T 2cq0_A 89 VEWAKPST 96 (103)
T ss_dssp EEESSCCC
T ss_pred EEECCCCC
Confidence 99998664
No 25
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.64 E-value=5.4e-16 Score=135.56 Aligned_cols=81 Identities=30% Similarity=0.496 Sum_probs=76.4
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEE
Q 003091 58 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 137 (848)
Q Consensus 58 ~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V 137 (848)
+..++|||+|||+.+++++|.++|++||.|.+|+|+. +..+++++|||||+|.+.++|.+|+..|||..|+|+.|+|
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 81 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPL---DYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 81 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCE---ETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEE---CCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 4678999999999999999999999999999999984 6678889999999999999999999999999999999999
Q ss_pred Eecc
Q 003091 138 GWGK 141 (848)
Q Consensus 138 ~~ak 141 (848)
.||+
T Consensus 82 ~~ak 85 (85)
T 3mdf_A 82 NLAK 85 (85)
T ss_dssp EECC
T ss_pred EEcC
Confidence 9986
No 26
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.64 E-value=5e-16 Score=144.68 Aligned_cols=80 Identities=29% Similarity=0.522 Sum_probs=73.3
Q ss_pred CccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEEE
Q 003091 59 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 138 (848)
Q Consensus 59 ~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V~ 138 (848)
.+++|||+|||+++++++|+++|++||.|.+|+|+. +. +.++|||||+|.+.++|++|+..|||..|+|+.|+|.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~---d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~ 78 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC---DE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVG 78 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE---ET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEee---cC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 357999999999999999999999999999999994 42 4478999999999999999999999999999999999
Q ss_pred eccCC
Q 003091 139 WGKSV 143 (848)
Q Consensus 139 ~ak~~ 143 (848)
|+++.
T Consensus 79 ~a~~~ 83 (115)
T 4f25_A 79 RFKSR 83 (115)
T ss_dssp ESSCC
T ss_pred ECCCc
Confidence 98864
No 27
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.64 E-value=3e-16 Score=141.68 Aligned_cols=80 Identities=11% Similarity=0.353 Sum_probs=74.0
Q ss_pred ccEEEEecCCCCCCHHHHHHHhccCCC--eeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCc----eecCe
Q 003091 60 TTNLYVGNLSPQVDENFLLRTFGRFGP--IASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGV----VVYEY 133 (848)
Q Consensus 60 ~t~LfVgNLp~~vte~~L~~~F~~fG~--I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~----~i~G~ 133 (848)
=.+|||+|||+.+|+++|.++|++||. |.+|+|+ .|..+|+++|||||+|.+.++|.+|+..|||. .|+|+
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~---~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLI---KDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECC---CCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEE---ecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 358999999999999999999999995 6789988 48889999999999999999999999999997 48999
Q ss_pred EEEEEeccC
Q 003091 134 ELKIGWGKS 142 (848)
Q Consensus 134 ~L~V~~ak~ 142 (848)
+|.|.||++
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999985
No 28
>2dt6_A Splicing factor 3 subunit 1; structure genomics, SF3A120, SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.217.1.1
Probab=99.64 E-value=2.3e-17 Score=137.76 Aligned_cols=60 Identities=32% Similarity=0.567 Sum_probs=56.8
Q ss_pred hhhhHHHHHHHHHhhccHHHHHHHHHhcCCCCcccccccCCCCCcceeeEEeeeeccCCcc
Q 003091 206 HLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQGDTL 266 (848)
Q Consensus 206 ~~~~~Id~~a~~V~~~G~~FE~~l~~~e~~np~f~FL~d~~s~~h~YYrwkl~s~~~gd~~ 266 (848)
+++.+||+||.||+++|++||++||+++.+||+|+||++ .+++|.||+|+|+++.+|++.
T Consensus 2 ~i~~iI~ktA~fVarnG~~fE~~l~~~e~~np~F~FL~~-~~~~h~YY~~~l~~~~~g~~~ 61 (64)
T 2dt6_A 2 EVRNIVDKTASFVARNGPEFEARIRQNEINNPKFNFLNP-NDPYHAYYRHKVSEFKEGKAQ 61 (64)
T ss_dssp HHHHHHHHHHHHHHHHCTHHHHHHHHHSTTCGGGGGGST-TSTTHHHHHHHHHHHHHTCSC
T ss_pred hHHHHHHHHHHHHHHcCHHHHHHHHHhccCCCCcccCCC-CCCCchHHHHHHHHHHcCCCC
Confidence 578999999999999999999999999999999999995 799999999999999998764
No 29
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=8e-16 Score=138.41 Aligned_cols=85 Identities=22% Similarity=0.317 Sum_probs=77.6
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccc---cCCcccEEEEEeCCHHHHHHHHHHcCCceecCeE
Q 003091 58 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEE---RRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYE 134 (848)
Q Consensus 58 ~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~---tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~ 134 (848)
+.+++|||+|||.++++++|.++|++||.|..|+|+. +.. ++.++|||||+|.+.++|.+|+..|||..|+|+.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 79 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISK---KKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHK 79 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEE---EECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEe---cCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeE
Confidence 4578999999999999999999999999999999984 443 5588999999999999999999999999999999
Q ss_pred EEEEeccCCCC
Q 003091 135 LKIGWGKSVAL 145 (848)
Q Consensus 135 L~V~~ak~~~~ 145 (848)
|+|.|+++...
T Consensus 80 l~V~~a~~~~~ 90 (98)
T 2cpf_A 80 LEVRISERATK 90 (98)
T ss_dssp CEEECSSCSSC
T ss_pred EEEEEccCCCC
Confidence 99999987654
No 30
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=1.3e-15 Score=137.77 Aligned_cols=83 Identities=14% Similarity=0.281 Sum_probs=77.1
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEE
Q 003091 57 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 136 (848)
Q Consensus 57 d~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~ 136 (848)
....++|||+|||..+++++|.++|++||.|.+|+|+. +. +++++|||||+|.+.++|.+|+..|||..|+|+.|+
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~---~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 89 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVT---NR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIK 89 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEE---CT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEE---CC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 35578999999999999999999999999999999994 44 788999999999999999999999999999999999
Q ss_pred EEeccCC
Q 003091 137 IGWGKSV 143 (848)
Q Consensus 137 V~~ak~~ 143 (848)
|.|+++.
T Consensus 90 v~~a~~~ 96 (100)
T 2do4_A 90 VAISNSG 96 (100)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 9999865
No 31
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.3e-15 Score=136.06 Aligned_cols=83 Identities=30% Similarity=0.434 Sum_probs=77.6
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEE
Q 003091 57 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 136 (848)
Q Consensus 57 d~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~ 136 (848)
.+.+++|||+|||+.+++++|.++|++||.|..|+|+. +..+++++|||||+|.+.++|.+|+..|||..|+|+.|+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~---~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVY---DQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 88 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEE---CSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEE---cCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34578999999999999999999999999999999984 677889999999999999999999999999999999999
Q ss_pred EEeccC
Q 003091 137 IGWGKS 142 (848)
Q Consensus 137 V~~ak~ 142 (848)
|.||+.
T Consensus 89 v~~a~~ 94 (95)
T 2cqc_A 89 VSGPSS 94 (95)
T ss_dssp EECCSC
T ss_pred EEecCC
Confidence 999874
No 32
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=1.1e-15 Score=138.87 Aligned_cols=84 Identities=27% Similarity=0.390 Sum_probs=78.5
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEE
Q 003091 58 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 137 (848)
Q Consensus 58 ~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V 137 (848)
...++|||+|||..+++++|..+|++||.|..|.|+. +..++.++|||||+|.+.++|.+|+..|||..|+|+.|+|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPR---EPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRV 87 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCB---CSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEE
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEe---CCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 4578999999999999999999999999999999984 6778899999999999999999999999999999999999
Q ss_pred EeccCCC
Q 003091 138 GWGKSVA 144 (848)
Q Consensus 138 ~~ak~~~ 144 (848)
.||+...
T Consensus 88 ~~a~~~~ 94 (103)
T 2dnm_A 88 QVARYGR 94 (103)
T ss_dssp EECSSCC
T ss_pred EECCcCC
Confidence 9998654
No 33
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=7.8e-16 Score=140.53 Aligned_cols=84 Identities=14% Similarity=0.281 Sum_probs=78.7
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEE
Q 003091 58 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 137 (848)
Q Consensus 58 ~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V 137 (848)
..+++|||+|||..+++++|..+|++||.|.+|.|+. +..+|.++|||||+|.+.++|.+|+..|||..|+|+.|+|
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 97 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNL---DRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 97 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEE---CTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEe---cCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEE
Confidence 4578999999999999999999999999999999984 7778899999999999999999999999999999999999
Q ss_pred EeccCCC
Q 003091 138 GWGKSVA 144 (848)
Q Consensus 138 ~~ak~~~ 144 (848)
.||++.+
T Consensus 98 ~~a~~~~ 104 (106)
T 1p27_B 98 DWCFVRG 104 (106)
T ss_dssp EESEESS
T ss_pred EeecCCC
Confidence 9998654
No 34
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.63 E-value=1.9e-16 Score=140.80 Aligned_cols=81 Identities=15% Similarity=0.197 Sum_probs=71.6
Q ss_pred cEEEEecCCCCCCHHHHHHHhccCC--CeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEEE
Q 003091 61 TNLYVGNLSPQVDENFLLRTFGRFG--PIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 138 (848)
Q Consensus 61 t~LfVgNLp~~vte~~L~~~F~~fG--~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V~ 138 (848)
.+|||||||.++++++|.++|++|| .|.+|+|+ .+..+|+++|||||+|.+.++|++|+..|||..|+|+.|+|.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~---~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~ 78 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFF---ENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVT 78 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEE---ECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEEC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEE---ecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEE
Confidence 4799999999999999999999999 99999999 477889999999999999999999999999999999999999
Q ss_pred eccCCC
Q 003091 139 WGKSVA 144 (848)
Q Consensus 139 ~ak~~~ 144 (848)
++.+.+
T Consensus 79 ~~~~~~ 84 (90)
T 3p5t_L 79 PSNKLE 84 (90)
T ss_dssp CC----
T ss_pred ECCCCc
Confidence 987653
No 35
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.8e-15 Score=137.88 Aligned_cols=85 Identities=22% Similarity=0.412 Sum_probs=79.0
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEE
Q 003091 57 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 136 (848)
Q Consensus 57 d~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~ 136 (848)
....++|||+|||..+++++|.++|++||.|..|+|+. +..++.++|||||+|.+.++|.+|+..|||..|+|+.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPK---DRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIR 88 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCB---CSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEe---cCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 34578999999999999999999999999999999984 667889999999999999999999999999999999999
Q ss_pred EEeccCCC
Q 003091 137 IGWGKSVA 144 (848)
Q Consensus 137 V~~ak~~~ 144 (848)
|.|+++..
T Consensus 89 v~~a~~~~ 96 (105)
T 1x5u_A 89 VNKASAHN 96 (105)
T ss_dssp EEETTTTS
T ss_pred EEECCCCC
Confidence 99998654
No 36
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.63 E-value=1.9e-15 Score=141.14 Aligned_cols=83 Identities=27% Similarity=0.537 Sum_probs=77.4
Q ss_pred CccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEEE
Q 003091 59 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 138 (848)
Q Consensus 59 ~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V~ 138 (848)
..++|||+|||.++++++|.++|++||.|.+|.|+. +. +|+++|||||+|.+.++|++|+..|||..|+|+.|+|.
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~---~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~ 81 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIK---DR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVE 81 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEEC---ST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEE---CC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 467999999999999999999999999999999994 54 88999999999999999999999999999999999999
Q ss_pred eccCCCC
Q 003091 139 WGKSVAL 145 (848)
Q Consensus 139 ~ak~~~~ 145 (848)
|+++...
T Consensus 82 ~a~~~~~ 88 (116)
T 2fy1_A 82 QAKKPSF 88 (116)
T ss_dssp ECCCSSC
T ss_pred ECCCCCC
Confidence 9986654
No 37
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=2e-15 Score=137.93 Aligned_cols=85 Identities=22% Similarity=0.448 Sum_probs=78.9
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcc-cccCCcccEEEEEeCCHHHHHHHHHHc-CCceecCeE
Q 003091 57 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTE-EERRRQRNCGFVAFMNRADGQAAKDEM-QGVVVYEYE 134 (848)
Q Consensus 57 d~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d-~~tg~~rg~gFV~F~~~~~A~~Ai~~l-nG~~i~G~~ 134 (848)
+...++|||+|||..+++++|.++|++||.|..|+|+. + ..++.++|||||+|.+.++|.+|+..| ||..|+|+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~ 88 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPK---KMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRR 88 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCC---CCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCB
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEec---CCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCE
Confidence 45678999999999999999999999999999999984 5 568899999999999999999999999 999999999
Q ss_pred EEEEeccCCC
Q 003091 135 LKIGWGKSVA 144 (848)
Q Consensus 135 L~V~~ak~~~ 144 (848)
|+|.||++..
T Consensus 89 l~v~~a~~~~ 98 (107)
T 2cph_A 89 LVLEWADSEV 98 (107)
T ss_dssp CEEEECCCCC
T ss_pred EEEEeCCCCC
Confidence 9999998764
No 38
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=2e-15 Score=137.18 Aligned_cols=84 Identities=33% Similarity=0.501 Sum_probs=77.9
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEE
Q 003091 57 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 136 (848)
Q Consensus 57 d~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~ 136 (848)
....++|||+|||+.+++++|.++|++||.|..|+|+. + ++.+++||||+|.+.++|.+|+..|||..|+|+.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~---~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMM---E--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 86 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEE---C--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEc---C--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 45678999999999999999999999999999999994 4 788999999999999999999999999999999999
Q ss_pred EEeccCCCC
Q 003091 137 IGWGKSVAL 145 (848)
Q Consensus 137 V~~ak~~~~ 145 (848)
|.|+++...
T Consensus 87 V~~a~~~~~ 95 (103)
T 2d9p_A 87 VALAQRKEE 95 (103)
T ss_dssp EEECSSCCC
T ss_pred EEEeccccc
Confidence 999987643
No 39
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.3e-15 Score=136.35 Aligned_cols=84 Identities=25% Similarity=0.524 Sum_probs=78.3
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhccCCCeeEE-EEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEE
Q 003091 58 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASV-KIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 136 (848)
Q Consensus 58 ~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~sv-kI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~ 136 (848)
..+++|||+|||+.+++++|..+|++||.|..| +|+. +..++.++|||||+|.+.++|.+|+..|||..|+|+.|+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~---~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 79 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMR---DPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPIT 79 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECC---CTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEE---cCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 357899999999999999999999999999999 9984 667889999999999999999999999999999999999
Q ss_pred EEeccCCC
Q 003091 137 IGWGKSVA 144 (848)
Q Consensus 137 V~~ak~~~ 144 (848)
|.|+++..
T Consensus 80 v~~a~~~~ 87 (96)
T 1x5t_A 80 VSYAFKKD 87 (96)
T ss_dssp EEESCCCC
T ss_pred EEEecccC
Confidence 99998654
No 40
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.62 E-value=1.3e-15 Score=139.15 Aligned_cols=86 Identities=17% Similarity=0.373 Sum_probs=79.3
Q ss_pred CCCCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCcee---cC
Q 003091 56 GDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVV---YE 132 (848)
Q Consensus 56 ~d~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i---~G 132 (848)
.+...++|||+|||.++++++|+++|++||.|.+|+|+. +..+++++|||||+|.+.++|.+|+..|||..+ .|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g 85 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLK---DRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMN 85 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCC---CSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEe---cCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCC
Confidence 345678999999999999999999999999999999984 777899999999999999999999999999998 89
Q ss_pred eEEEEEeccCCC
Q 003091 133 YELKIGWGKSVA 144 (848)
Q Consensus 133 ~~L~V~~ak~~~ 144 (848)
+.|+|.|+++..
T Consensus 86 ~~l~v~~a~~~~ 97 (106)
T 2dgp_A 86 RPIQVKPADSES 97 (106)
T ss_dssp SCCEEEECCCCS
T ss_pred ceEEEEECCccc
Confidence 999999998654
No 41
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=4.6e-15 Score=137.21 Aligned_cols=84 Identities=17% Similarity=0.292 Sum_probs=76.9
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEE
Q 003091 57 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 136 (848)
Q Consensus 57 d~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~ 136 (848)
...+++|||+|||..+++++|+++|++||.|.+|+|+. +. +++++|||||+|.+.++|.+|+..|||..|+|+.|+
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~---~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 87 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILE---DK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMH 87 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEE---CT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---CC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEE
Confidence 34578999999999999999999999999999999984 43 588899999999999999999999999999999999
Q ss_pred EEeccCCC
Q 003091 137 IGWGKSVA 144 (848)
Q Consensus 137 V~~ak~~~ 144 (848)
|.|++...
T Consensus 88 v~~a~~~~ 95 (114)
T 2do0_A 88 VKMDERAL 95 (114)
T ss_dssp EEECSCCC
T ss_pred EEEcccCC
Confidence 99987543
No 42
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.62 E-value=1.3e-15 Score=136.80 Aligned_cols=83 Identities=19% Similarity=0.427 Sum_probs=77.8
Q ss_pred ccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEe
Q 003091 60 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 139 (848)
Q Consensus 60 ~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V~~ 139 (848)
+++|||+|||..+++++|.++|++||.|.+|+|+. +..+|.++|||||+|.+.++|.+|+..|||..|+|+.|+|.|
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 78 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMF---DPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGY 78 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCB---CTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEe---CCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 57999999999999999999999999999999984 667889999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 003091 140 GKSVAL 145 (848)
Q Consensus 140 ak~~~~ 145 (848)
|++...
T Consensus 79 a~~~~~ 84 (96)
T 2x1f_A 79 SSNSDI 84 (96)
T ss_dssp CSCSSG
T ss_pred cCCCCC
Confidence 987643
No 43
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.62 E-value=1.2e-15 Score=137.83 Aligned_cols=82 Identities=17% Similarity=0.293 Sum_probs=76.9
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHhccCCCeeE--------EEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCc
Q 003091 57 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIAS--------VKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGV 128 (848)
Q Consensus 57 d~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~s--------vkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~ 128 (848)
.+..++|||+|||.++++++|+++|++||.|.. |+|+. +..+|+++|||||+|.+.++|.+|+..|||.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~---~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYT---DRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEE---CTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEe---cCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 356789999999999999999999999999999 99984 6778999999999999999999999999999
Q ss_pred eecCeEEEEEecc
Q 003091 129 VVYEYELKIGWGK 141 (848)
Q Consensus 129 ~i~G~~L~V~~ak 141 (848)
.|+|+.|+|.||+
T Consensus 87 ~~~g~~l~V~~A~ 99 (99)
T 2la6_A 87 EFSGNPIKVSFAT 99 (99)
T ss_dssp BSSSSBCEEEECC
T ss_pred EeCCcEEEEEecC
Confidence 9999999999985
No 44
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.4e-15 Score=137.75 Aligned_cols=85 Identities=28% Similarity=0.454 Sum_probs=79.0
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEE
Q 003091 58 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 137 (848)
Q Consensus 58 ~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V 137 (848)
...++|||+|||+.+++++|.++|++||.|..|+|+. +..++.++|||||+|.+.++|.+|+..|||..|+|+.|+|
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 86 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVK---DRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRV 86 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECC---CSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEe---CCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 4578999999999999999999999999999999994 6678889999999999999999999999999999999999
Q ss_pred EeccCCCC
Q 003091 138 GWGKSVAL 145 (848)
Q Consensus 138 ~~ak~~~~ 145 (848)
.|+++...
T Consensus 87 ~~a~~~~~ 94 (102)
T 1x5s_A 87 DQAGKSSD 94 (102)
T ss_dssp EEEECCCC
T ss_pred EECCCCCC
Confidence 99987643
No 45
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.62 E-value=1.1e-15 Score=140.94 Aligned_cols=86 Identities=27% Similarity=0.509 Sum_probs=79.5
Q ss_pred CCCCCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeE
Q 003091 55 DGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYE 134 (848)
Q Consensus 55 ~~d~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~ 134 (848)
.+.+..++|||+|||+.+++++|..+|++||.|.+|+|+. +..+|+++|||||+|.+.++|.+|+..|||..|+|+.
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~---~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~ 97 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMM---DSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRP 97 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEE---ETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSC
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---cCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 3455678999999999999999999999999999999994 6678899999999999999999999999999999999
Q ss_pred EEEEeccCC
Q 003091 135 LKIGWGKSV 143 (848)
Q Consensus 135 L~V~~ak~~ 143 (848)
|+|.|+++.
T Consensus 98 l~V~~a~~k 106 (108)
T 2jrs_A 98 MKVGHVTER 106 (108)
T ss_dssp CEEECSCSS
T ss_pred EEEEEcccC
Confidence 999999865
No 46
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=4.9e-15 Score=134.61 Aligned_cols=85 Identities=28% Similarity=0.517 Sum_probs=76.8
Q ss_pred CCCCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEE
Q 003091 56 GDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYEL 135 (848)
Q Consensus 56 ~d~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L 135 (848)
.....++|||+|||+.+++++|.++|++||.|.+|+|+. +. +.++|||||+|.+.++|.+|+..|||..|+|+.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~---~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 85 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIF---NE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 85 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEEC---CT--TTTCCEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEe---cC--CCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 345678999999999999999999999999999999994 32 2378999999999999999999999999999999
Q ss_pred EEEeccCCCC
Q 003091 136 KIGWGKSVAL 145 (848)
Q Consensus 136 ~V~~ak~~~~ 145 (848)
+|.|+++...
T Consensus 86 ~v~~a~~~~~ 95 (103)
T 2cq3_A 86 EVNNATARVM 95 (103)
T ss_dssp EEEECCSSCC
T ss_pred EEEEcccCCC
Confidence 9999987654
No 47
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=3.5e-15 Score=137.20 Aligned_cols=84 Identities=19% Similarity=0.393 Sum_probs=78.6
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcC------Cceec
Q 003091 58 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQ------GVVVY 131 (848)
Q Consensus 58 ~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~ln------G~~i~ 131 (848)
...++|||+|||+.+++++|..+|++||.|.+|+|++ +..++.++|||||+|.+.++|.+|+..|| |..|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVL---HPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCB---CSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEe---cCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 4578999999999999999999999999999999994 77788999999999999999999999999 99999
Q ss_pred CeEEEEEeccCCC
Q 003091 132 EYELKIGWGKSVA 144 (848)
Q Consensus 132 G~~L~V~~ak~~~ 144 (848)
|+.|+|.|+++..
T Consensus 90 g~~l~v~~a~~~~ 102 (111)
T 1x4h_A 90 GRQLKVDLAVTRD 102 (111)
T ss_dssp SCEEEEECCCCCC
T ss_pred CEEEEEEECCCCc
Confidence 9999999998654
No 48
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=1e-15 Score=138.06 Aligned_cols=85 Identities=25% Similarity=0.418 Sum_probs=78.8
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhccCCCee-EEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeE--
Q 003091 58 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIA-SVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYE-- 134 (848)
Q Consensus 58 ~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~-svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~-- 134 (848)
..+++|||+|||+++++++|.++|++||.|. +|+|+. +..+++++|||||+|.+.++|++|+..|||..|.|+.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~---~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~ 83 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIR---NRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPA 83 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEE---CSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEee---cCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcc
Confidence 3578999999999999999999999999999 999994 7778999999999999999999999999999999999
Q ss_pred --EEEEeccCCCC
Q 003091 135 --LKIGWGKSVAL 145 (848)
Q Consensus 135 --L~V~~ak~~~~ 145 (848)
|+|.||++...
T Consensus 84 ~~l~v~~a~~~~~ 96 (99)
T 2div_A 84 KRFKLNYATYSGP 96 (99)
T ss_dssp EECCEEETTCCSS
T ss_pred eeEEEeecCCCCC
Confidence 99999986643
No 49
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.2e-15 Score=140.11 Aligned_cols=81 Identities=12% Similarity=0.167 Sum_probs=73.4
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCC--ceecCeE
Q 003091 57 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQG--VVVYEYE 134 (848)
Q Consensus 57 d~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG--~~i~G~~ 134 (848)
++..++|||+|||+.+++++|+++|++||.|.+|+|+. .+|||||+|.+.++|..|+..|++ ..|+|++
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~---------~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~ 83 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLK---------GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQP 83 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEET---------TTTEEEEEESSHHHHHHHHHHHTTSCCEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEc---------CCCEEEEEECCHHHHHHHHHHhccCCceECCEE
Confidence 34578999999999999999999999999999999993 379999999999999999998864 7899999
Q ss_pred EEEEeccCCCCC
Q 003091 135 LKIGWGKSVALP 146 (848)
Q Consensus 135 L~V~~ak~~~~p 146 (848)
|+|.||++..+.
T Consensus 84 l~V~~A~~~~~~ 95 (105)
T 1sjq_A 84 IYIQFSNHKELK 95 (105)
T ss_dssp CCBCCCSSSSCC
T ss_pred EEEEEcCCCCCC
Confidence 999999877654
No 50
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.61 E-value=3.5e-15 Score=135.90 Aligned_cols=84 Identities=25% Similarity=0.437 Sum_probs=77.3
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecC---e
Q 003091 57 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYE---Y 133 (848)
Q Consensus 57 d~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G---~ 133 (848)
.+.+++|||+|||..+++++|..+|++||.|.+|+|+. +. ++.++|||||+|.+.++|.+|+..|||..+.| +
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~---~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~ 87 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLR---GP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASS 87 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEE---CS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---CC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCc
Confidence 45678999999999999999999999999999999994 44 68889999999999999999999999999988 9
Q ss_pred EEEEEeccCCC
Q 003091 134 ELKIGWGKSVA 144 (848)
Q Consensus 134 ~L~V~~ak~~~ 144 (848)
.|+|.||++..
T Consensus 88 ~l~V~~a~~~~ 98 (105)
T 2dnh_A 88 SLVVKFADTDK 98 (105)
T ss_dssp CCEEEESCSSC
T ss_pred cEEEEECccCc
Confidence 99999998654
No 51
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=3e-15 Score=138.33 Aligned_cols=85 Identities=19% Similarity=0.302 Sum_probs=78.7
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHhccCCCee--------EEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCc
Q 003091 57 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIA--------SVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGV 128 (848)
Q Consensus 57 d~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~--------svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~ 128 (848)
....++|||+|||..+++++|.++|++||.|. .|+|+. +..+++++|||||+|.+.++|.+|+..|||.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~---~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 88 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYL---DKETGKPKGDATVSYEDPPTAKAAVEWFDGK 88 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCB---CTTTCSBCSEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEE---eCCCCCeeeEEEEEECCHHHHHHHHHHcCCC
Confidence 45678999999999999999999999999999 599884 6678999999999999999999999999999
Q ss_pred eecCeEEEEEeccCCC
Q 003091 129 VVYEYELKIGWGKSVA 144 (848)
Q Consensus 129 ~i~G~~L~V~~ak~~~ 144 (848)
.|+|+.|+|.|+++..
T Consensus 89 ~~~g~~l~V~~a~~~~ 104 (113)
T 2cpe_A 89 DFQGSKLKVSLARKKP 104 (113)
T ss_dssp EETTEECEEECSSCCC
T ss_pred ccCCCEEEEEECCCCC
Confidence 9999999999998654
No 52
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.61 E-value=9.7e-15 Score=137.37 Aligned_cols=86 Identities=22% Similarity=0.239 Sum_probs=79.1
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEE
Q 003091 57 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 136 (848)
Q Consensus 57 d~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~ 136 (848)
...+++|||+|||..+++++|+++|++||.|.+|+|+. +. +|+++|||||+|.+.++|.+|+..|||..|+|+.|+
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~---~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 107 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDY---DR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMD 107 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEEC---CS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEE---CC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 34578999999999999999999999999999999994 55 788999999999999999999999999999999999
Q ss_pred EEeccCCCCC
Q 003091 137 IGWGKSVALP 146 (848)
Q Consensus 137 V~~ak~~~~p 146 (848)
|.||.....+
T Consensus 108 V~~a~~~~~~ 117 (124)
T 2kt5_A 108 IQLVASQIDL 117 (124)
T ss_dssp EEEECCTTCC
T ss_pred EEEeCCCCCC
Confidence 9999876543
No 53
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.61 E-value=2e-15 Score=138.83 Aligned_cols=85 Identities=14% Similarity=0.323 Sum_probs=78.9
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEE
Q 003091 57 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 136 (848)
Q Consensus 57 d~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~ 136 (848)
...+++|||+|||..+++++|..+|++||.|.+|+|+ .+..+|.++|||||+|.+.++|..|+..|||..|+|+.|+
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~---~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 99 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLN---LDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQ 99 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECC---BCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE---ecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 3457899999999999999999999999999999998 4667889999999999999999999999999999999999
Q ss_pred EEeccCCC
Q 003091 137 IGWGKSVA 144 (848)
Q Consensus 137 V~~ak~~~ 144 (848)
|.||++..
T Consensus 100 V~~a~~~~ 107 (110)
T 1oo0_B 100 VDWCFVKG 107 (110)
T ss_dssp EEESEESS
T ss_pred EEEcccCC
Confidence 99998653
No 54
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.61 E-value=4e-16 Score=141.67 Aligned_cols=81 Identities=15% Similarity=0.134 Sum_probs=76.8
Q ss_pred CccEEEEecCCC------CCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecC
Q 003091 59 QTTNLYVGNLSP------QVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYE 132 (848)
Q Consensus 59 ~~t~LfVgNLp~------~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G 132 (848)
.+++|||+|||. .+++++|.++|++||.|.+|+|+ .+..||+++|||||+|.+.++|.+|+..|||..|+|
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~---~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g 81 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFP---IDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDL 81 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECC---EETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEE---EcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 468999999999 99999999999999999999998 477889999999999999999999999999999999
Q ss_pred -eEEEEEeccC
Q 003091 133 -YELKIGWGKS 142 (848)
Q Consensus 133 -~~L~V~~ak~ 142 (848)
+.|+|.||++
T Consensus 82 ~r~l~V~~a~~ 92 (100)
T 3ns6_A 82 KHRLFLYTMKD 92 (100)
T ss_dssp SCBCEEEESHH
T ss_pred CeEEEEEECch
Confidence 9999999874
No 55
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.61 E-value=5.4e-15 Score=134.46 Aligned_cols=83 Identities=17% Similarity=0.266 Sum_probs=76.7
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEE
Q 003091 57 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 136 (848)
Q Consensus 57 d~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~ 136 (848)
....++|||+|||+.+++++|.++|++|| |.+|+|+. +..+++++|||||+|.+.++|.+|+ .|||..|+|+.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~---~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 86 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVR---DKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLR 86 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEE---CSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEee---cCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEE
Confidence 34578999999999999999999999997 99999994 7778999999999999999999999 9999999999999
Q ss_pred EEeccCCC
Q 003091 137 IGWGKSVA 144 (848)
Q Consensus 137 V~~ak~~~ 144 (848)
|.|+++..
T Consensus 87 V~~a~~~~ 94 (103)
T 2dng_A 87 VDIAEGRK 94 (103)
T ss_dssp EEECCCCC
T ss_pred EEEecCCC
Confidence 99998654
No 56
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=1.7e-15 Score=137.82 Aligned_cols=84 Identities=24% Similarity=0.418 Sum_probs=77.7
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhcc-CCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCce-ecCeEE
Q 003091 58 PQTTNLYVGNLSPQVDENFLLRTFGR-FGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVV-VYEYEL 135 (848)
Q Consensus 58 ~~~t~LfVgNLp~~vte~~L~~~F~~-fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~-i~G~~L 135 (848)
...++|||+|||+++++++|..+|++ ||.|.+|+|+. +. +++++|||||+|.+.++|.+|+..|||.. |+|+.|
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~---~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l 82 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVL---DQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPV 82 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEE---CT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEE---CC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeE
Confidence 45689999999999999999999999 99999999994 55 88899999999999999999999999999 999999
Q ss_pred EEEeccCCCC
Q 003091 136 KIGWGKSVAL 145 (848)
Q Consensus 136 ~V~~ak~~~~ 145 (848)
+|.|+++...
T Consensus 83 ~v~~a~~~~~ 92 (104)
T 2dhg_A 83 RLSVAIPKAS 92 (104)
T ss_dssp CCCBCCCCCS
T ss_pred EEEEccCCCc
Confidence 9999986643
No 57
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.61 E-value=2.9e-15 Score=136.33 Aligned_cols=79 Identities=19% Similarity=0.234 Sum_probs=72.9
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCce--ecCeEE
Q 003091 58 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVV--VYEYEL 135 (848)
Q Consensus 58 ~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~--i~G~~L 135 (848)
+++.+|||+|||+.+|+++|.++|++||.|.+|+|+. .+|||||+|.+.++|.+|+..|||.. |.|++|
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~---------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i 89 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP---------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPA 89 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET---------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc---------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEE
Confidence 4578999999999999999999999999999999983 57999999999999999999999986 789999
Q ss_pred EEEeccCCCC
Q 003091 136 KIGWGKSVAL 145 (848)
Q Consensus 136 ~V~~ak~~~~ 145 (848)
+|.|++++.+
T Consensus 90 ~V~~S~~k~l 99 (100)
T 3r27_A 90 FVNYSTSQKI 99 (100)
T ss_dssp EEEECSCSCC
T ss_pred EEEecccccc
Confidence 9999987654
No 58
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.60 E-value=2.2e-15 Score=134.63 Aligned_cols=82 Identities=26% Similarity=0.455 Sum_probs=75.8
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEE
Q 003091 57 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 136 (848)
Q Consensus 57 d~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~ 136 (848)
+...++|||+|||+.+++++|+++|++||.|.+|+|+. +.. ++++|||||+|.+.++|.+|+..|||..|+|+.|+
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~---~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICK---DRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPIN 88 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEE---CTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEE---CCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEE
Confidence 45678999999999999999999999999999999984 443 78899999999999999999999999999999999
Q ss_pred EEeccC
Q 003091 137 IGWGKS 142 (848)
Q Consensus 137 V~~ak~ 142 (848)
|.|++.
T Consensus 89 V~~a~~ 94 (95)
T 2ywk_A 89 VSGPSS 94 (95)
T ss_dssp EECCCC
T ss_pred EEEcCC
Confidence 999874
No 59
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=3.7e-15 Score=134.11 Aligned_cols=82 Identities=15% Similarity=0.188 Sum_probs=74.3
Q ss_pred CCccEEEEecCCCCCCHHHHH----HHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCe
Q 003091 58 PQTTNLYVGNLSPQVDENFLL----RTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEY 133 (848)
Q Consensus 58 ~~~t~LfVgNLp~~vte~~L~----~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~ 133 (848)
...++|||+|||..+++++|+ .+|++||.|.+|+|+. +..+ ++||||+|.+.++|.+|+..|||..|+|+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~---~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr 80 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSP---HTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSK 80 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECS---CCST---TCCEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEe---CCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 356899999999999999999 9999999999999994 4433 78999999999999999999999999999
Q ss_pred EEEEEeccCCCC
Q 003091 134 ELKIGWGKSVAL 145 (848)
Q Consensus 134 ~L~V~~ak~~~~ 145 (848)
.|+|.||++.+.
T Consensus 81 ~l~V~~a~~~~~ 92 (96)
T 2dgx_A 81 KILVSLATGASG 92 (96)
T ss_dssp EEEEEECCCSSC
T ss_pred EEEEEEcCCCCC
Confidence 999999986543
No 60
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=5.3e-15 Score=135.70 Aligned_cols=80 Identities=19% Similarity=0.189 Sum_probs=72.3
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCc--eecCeE
Q 003091 57 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGV--VVYEYE 134 (848)
Q Consensus 57 d~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~--~i~G~~ 134 (848)
.+++++|||+|||+.+++++|.++|++||.|.+|.|+. .+|||||+|.+.++|.+|+..|+|. .|+|++
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~---------~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~ 82 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMP---------FKRQALVEFENIDSAKECVTFAADVPVYIAGQQ 82 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEET---------TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC---------CCCEEEEEECCHHHHHHHHHHhccCCceECCEE
Confidence 34578999999999999999999999999999999983 4799999999999999999999775 489999
Q ss_pred EEEEeccCCCC
Q 003091 135 LKIGWGKSVAL 145 (848)
Q Consensus 135 L~V~~ak~~~~ 145 (848)
|+|.|++...+
T Consensus 83 l~V~~a~~~~~ 93 (104)
T 1wex_A 83 AFFNYSTSKRI 93 (104)
T ss_dssp CEEEECSSSSC
T ss_pred EEEEEccCccc
Confidence 99999987654
No 61
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=2.3e-15 Score=135.44 Aligned_cols=84 Identities=21% Similarity=0.253 Sum_probs=77.2
Q ss_pred CCCCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEE
Q 003091 56 GDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYEL 135 (848)
Q Consensus 56 ~d~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L 135 (848)
..+..++|||+|||+.+++++|+++|++||.|..+.++ .+..+++++|||||+|.+.++|++|+..|||..|+|+.|
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~---~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 87 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCL---KYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKV 87 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEE---EECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEE---EECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEE
Confidence 34567899999999999999999999999999988887 366788999999999999999999999999999999999
Q ss_pred EEEeccC
Q 003091 136 KIGWGKS 142 (848)
Q Consensus 136 ~V~~ak~ 142 (848)
+|.|++.
T Consensus 88 ~V~~a~~ 94 (98)
T 2cqp_A 88 KLVLGSG 94 (98)
T ss_dssp EEEESSC
T ss_pred EEEEcCC
Confidence 9999874
No 62
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=3e-15 Score=136.52 Aligned_cols=85 Identities=18% Similarity=0.251 Sum_probs=78.5
Q ss_pred CCCCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEE
Q 003091 56 GDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYEL 135 (848)
Q Consensus 56 ~d~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L 135 (848)
.+...++|||+|||+.+++++|+.+|++||.|.+|+|+. +..+++++|||||+|.+.++|.+|+.. +|..|+|+.|
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~---~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l 87 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMK---DKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNI 87 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEE---CSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEee---CCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEE
Confidence 345678999999999999999999999999999999994 667889999999999999999999998 9999999999
Q ss_pred EEEeccCCC
Q 003091 136 KIGWGKSVA 144 (848)
Q Consensus 136 ~V~~ak~~~ 144 (848)
+|.|+++..
T Consensus 88 ~V~~a~~~~ 96 (105)
T 2dh8_A 88 DPKPCTPRG 96 (105)
T ss_dssp BCCCSCCSS
T ss_pred EEEEccCCC
Confidence 999998664
No 63
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.60 E-value=4.2e-15 Score=145.49 Aligned_cols=85 Identities=22% Similarity=0.389 Sum_probs=79.1
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEE
Q 003091 57 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 136 (848)
Q Consensus 57 d~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~ 136 (848)
....++|||+|||..+++++|.++|++||.|..|+|+. +..++.+++||||+|.+.++|++||..|||..|+|+.|+
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 112 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGL---DKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIR 112 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE---CTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEe---cCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 34578999999999999999999999999999999994 777889999999999999999999999999999999999
Q ss_pred EEeccCCC
Q 003091 137 IGWGKSVA 144 (848)
Q Consensus 137 V~~ak~~~ 144 (848)
|.||++..
T Consensus 113 V~~a~~~~ 120 (156)
T 1h2v_Z 113 TDWDAGFK 120 (156)
T ss_dssp EEEESCCC
T ss_pred EEECCCCC
Confidence 99998654
No 64
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.59 E-value=2.5e-15 Score=132.04 Aligned_cols=82 Identities=18% Similarity=0.329 Sum_probs=74.7
Q ss_pred CccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCC-cccEEEEEeCCHHHHHHHHHHcCCceecCeEEEE
Q 003091 59 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRR-QRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 137 (848)
Q Consensus 59 ~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~-~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V 137 (848)
..++|||+|||.++++++|.++|++||.|.+|.|+. +..++. ++|||||+|.+.++|.+|+..|||..|+|+.|+|
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~---~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 79 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPV---ERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITA 79 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCE---ETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEe---CCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEE
Confidence 468999999999999999999999999999999984 444444 8999999999999999999999999999999999
Q ss_pred EeccCC
Q 003091 138 GWGKSV 143 (848)
Q Consensus 138 ~~ak~~ 143 (848)
.|+.+.
T Consensus 80 ~~a~~~ 85 (88)
T 4a8x_A 80 TAVLAP 85 (88)
T ss_dssp EEECCC
T ss_pred EECCCC
Confidence 998643
No 65
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.59 E-value=1.9e-15 Score=148.72 Aligned_cols=82 Identities=12% Similarity=0.206 Sum_probs=76.4
Q ss_pred CccEEEEecCCCCCCHHHHHHHhccCC--CeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEE
Q 003091 59 QTTNLYVGNLSPQVDENFLLRTFGRFG--PIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 136 (848)
Q Consensus 59 ~~t~LfVgNLp~~vte~~L~~~F~~fG--~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~ 136 (848)
..++|||||||+++++++|.++|++|| .|.+|+|+ .|..+|+++|||||+|.+.++|.+||..|||..|+|+.|+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~---~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~ 130 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFA---ENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVD 130 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEE---ECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEE---ecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeE
Confidence 468999999999999999999999999 99999999 4778999999999999999999999999999999999999
Q ss_pred EEeccCC
Q 003091 137 IGWGKSV 143 (848)
Q Consensus 137 V~~ak~~ 143 (848)
|.||.+.
T Consensus 131 V~~a~~~ 137 (156)
T 3n9u_C 131 VRPATRQ 137 (156)
T ss_dssp EEECCHH
T ss_pred EEEcCCC
Confidence 9998754
No 66
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=3.5e-15 Score=137.60 Aligned_cols=84 Identities=30% Similarity=0.523 Sum_probs=76.3
Q ss_pred CCCCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEE
Q 003091 56 GDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYEL 135 (848)
Q Consensus 56 ~d~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L 135 (848)
.....++|||+|||.++++++|.++|++||.|.+|+|+. +. +.++|||||+|.+.++|++|+..|||..|+|+.|
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~---~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 99 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIF---NE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 99 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECC---BT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEE---CC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 345678999999999999999999999999999999984 32 3488999999999999999999999999999999
Q ss_pred EEEeccCCC
Q 003091 136 KIGWGKSVA 144 (848)
Q Consensus 136 ~V~~ak~~~ 144 (848)
+|.||++..
T Consensus 100 ~V~~a~~~~ 108 (109)
T 2err_A 100 EVNNATARV 108 (109)
T ss_dssp EEEECCCSC
T ss_pred EEEECCCCc
Confidence 999998754
No 67
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=8.4e-15 Score=133.40 Aligned_cols=82 Identities=16% Similarity=0.269 Sum_probs=75.7
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCccccc-CCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEE
Q 003091 58 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEER-RRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 136 (848)
Q Consensus 58 ~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~t-g~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~ 136 (848)
...++|||+|||+.+++++|.++|++|| |.+|+|+. +..+ ++++|||||+|.+.++|.+|+ .|||..|+|+.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~---~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 87 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPR---EPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIR 87 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCB---CSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEec---CCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEE
Confidence 4568999999999999999999999999 99999984 6666 889999999999999999999 9999999999999
Q ss_pred EEeccCCC
Q 003091 137 IGWGKSVA 144 (848)
Q Consensus 137 V~~ak~~~ 144 (848)
|.|+++..
T Consensus 88 V~~a~~~~ 95 (104)
T 1wi8_A 88 VDVADQAQ 95 (104)
T ss_dssp EEECCCCC
T ss_pred EEEccCCC
Confidence 99998653
No 68
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=9.9e-15 Score=132.59 Aligned_cols=85 Identities=19% Similarity=0.167 Sum_probs=76.9
Q ss_pred CCCCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEE
Q 003091 56 GDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYEL 135 (848)
Q Consensus 56 ~d~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L 135 (848)
.....++|||+|||..+++++|..+|++||.|..|+|+. +..+++++|||||+|.+.++|.+|+. ++..|+|+.|
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l 85 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKK---DLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWC 85 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEE---CSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEe---cCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEE
Confidence 345678999999999999999999999999999999994 66789999999999999999999998 4789999999
Q ss_pred EEEeccCCCC
Q 003091 136 KIGWGKSVAL 145 (848)
Q Consensus 136 ~V~~ak~~~~ 145 (848)
.|.|+++...
T Consensus 86 ~v~~a~~~~~ 95 (103)
T 2cqg_A 86 DCKLPNSKQS 95 (103)
T ss_dssp EEECCCTTCC
T ss_pred EEEecCCCCc
Confidence 9999987654
No 69
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.4e-14 Score=132.97 Aligned_cols=82 Identities=24% Similarity=0.412 Sum_probs=75.1
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEE
Q 003091 57 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 136 (848)
Q Consensus 57 d~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~ 136 (848)
....++|||+|||+.+++++|+++|++||.|..|+|+. ++.+++||||+|.+.++|.+|+..|||..|+|+.|+
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~------~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 92 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN------RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLR 92 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC------SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE------CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 34578999999999999999999999999999999973 345789999999999999999999999999999999
Q ss_pred EEeccCCC
Q 003091 137 IGWGKSVA 144 (848)
Q Consensus 137 V~~ak~~~ 144 (848)
|.|+++..
T Consensus 93 V~~a~~~~ 100 (109)
T 1x4a_A 93 VEFPRSGR 100 (109)
T ss_dssp EECCCCCC
T ss_pred EEEcccCC
Confidence 99998654
No 70
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.59 E-value=2.8e-15 Score=141.28 Aligned_cols=86 Identities=14% Similarity=0.267 Sum_probs=79.5
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEE
Q 003091 57 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 136 (848)
Q Consensus 57 d~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~ 136 (848)
...+++|||+|||+.+++++|..+|++||.|.+|.|+. +..++.++|||||+|.+.++|.+|+..|||..|+|+.|+
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 95 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNL---DRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPIS 95 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCB---CTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEe---cCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 34578999999999999999999999999999999984 667889999999999999999999999999999999999
Q ss_pred EEeccCCCC
Q 003091 137 IGWGKSVAL 145 (848)
Q Consensus 137 V~~ak~~~~ 145 (848)
|.||++...
T Consensus 96 v~~a~~~~~ 104 (126)
T 3ex7_B 96 VDWCFVRGP 104 (126)
T ss_dssp EEESEESSS
T ss_pred EEEecCCCC
Confidence 999986643
No 71
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.59 E-value=5.7e-15 Score=141.53 Aligned_cols=85 Identities=34% Similarity=0.502 Sum_probs=79.2
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEE
Q 003091 57 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 136 (848)
Q Consensus 57 d~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~ 136 (848)
....++|||+|||.++++++|..+|+.||.|.+|+|+. +..+++++|||||+|.+.++|.+|+..|||..|+|+.|+
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 115 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVC---DRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLK 115 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEE---ETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---cCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 45578999999999999999999999999999999994 667889999999999999999999999999999999999
Q ss_pred EEeccCCC
Q 003091 137 IGWGKSVA 144 (848)
Q Consensus 137 V~~ak~~~ 144 (848)
|.||++..
T Consensus 116 v~~a~~~~ 123 (139)
T 1u6f_A 116 VALAASGH 123 (139)
T ss_dssp EEESSCCC
T ss_pred EEECCCCC
Confidence 99998764
No 72
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.59 E-value=4.4e-15 Score=135.73 Aligned_cols=80 Identities=21% Similarity=0.287 Sum_probs=75.5
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEE
Q 003091 58 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 137 (848)
Q Consensus 58 ~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V 137 (848)
..+++|||+|||+.+++++|.++|++||.|.+|+|+. +. +|+++|||||+|.+.++|.+|+..|||..|+|+.|+|
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~---~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 102 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHY---DR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNI 102 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEE---CT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---CC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 4578999999999999999999999999999999994 55 8889999999999999999999999999999999999
Q ss_pred Eecc
Q 003091 138 GWGK 141 (848)
Q Consensus 138 ~~ak 141 (848)
.||.
T Consensus 103 ~~a~ 106 (107)
T 3ulh_A 103 QLVT 106 (107)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9986
No 73
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.59 E-value=3.6e-15 Score=132.42 Aligned_cols=83 Identities=19% Similarity=0.315 Sum_probs=76.9
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEE
Q 003091 58 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 137 (848)
Q Consensus 58 ~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V 137 (848)
+..++|||+|||..+++++|+.+|++||.|..|+|+. .+++++|||||+|.+.++|.+|+..|||..|+|+.|+|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~-----~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v 80 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKM-----ENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDV 80 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEE-----SSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEc-----cCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 4578999999999999999999999999999999983 37789999999999999999999999999999999999
Q ss_pred EeccCCCC
Q 003091 138 GWGKSVAL 145 (848)
Q Consensus 138 ~~ak~~~~ 145 (848)
.|+++...
T Consensus 81 ~~a~~~~~ 88 (92)
T 2dgv_A 81 RIDRNASG 88 (92)
T ss_dssp EECSCCSS
T ss_pred EEcCCCCC
Confidence 99987654
No 74
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.3e-14 Score=131.85 Aligned_cols=83 Identities=35% Similarity=0.576 Sum_probs=75.3
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEE
Q 003091 57 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 136 (848)
Q Consensus 57 d~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~ 136 (848)
....++|||+|||+.+++++|.++|++||.|.+|+|+. +. +.++|||||+|.+.++|.+|+..|||..|.|+.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~---~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 86 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMIT---EH--TSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVK 86 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEEC---CC--CSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEe---cC--CCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEE
Confidence 34678999999999999999999999999999999995 32 33689999999999999999999999999999999
Q ss_pred EEeccCCC
Q 003091 137 IGWGKSVA 144 (848)
Q Consensus 137 V~~ak~~~ 144 (848)
|.|+++..
T Consensus 87 V~~a~~~~ 94 (103)
T 2cqi_A 87 VNWATTPS 94 (103)
T ss_dssp EEECCCTT
T ss_pred EEECCCCc
Confidence 99998654
No 75
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.1e-15 Score=133.92 Aligned_cols=81 Identities=21% Similarity=0.323 Sum_probs=75.6
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEE
Q 003091 58 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 137 (848)
Q Consensus 58 ~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V 137 (848)
+.+++|||+|||+++++++|..+|++||.|.+|+|+. +..++.++|||||+|.+.++|.+|+..|||..|+|+.|+|
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~---~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 79 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAIL---DKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQ 79 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEEC---CSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEe---cCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEee
Confidence 4578999999999999999999999999999999994 6678899999999999999999999999999999999999
Q ss_pred Eecc
Q 003091 138 GWGK 141 (848)
Q Consensus 138 ~~ak 141 (848)
.|++
T Consensus 80 ~~~~ 83 (85)
T 1x4e_A 80 SGPS 83 (85)
T ss_dssp SCCC
T ss_pred cCCC
Confidence 8765
No 76
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.59 E-value=2.7e-15 Score=142.85 Aligned_cols=86 Identities=12% Similarity=0.326 Sum_probs=78.7
Q ss_pred CCCCCccEEEEecCCCCCCHHHHHHHhccCCCeeE--EEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCc----
Q 003091 55 DGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIAS--VKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGV---- 128 (848)
Q Consensus 55 ~~d~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~s--vkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~---- 128 (848)
..+..+++|||+|||+++|+++|+++|++||.|.. |+|+ .+..+|+++|||||+|.+. +|.+|+..|||.
T Consensus 18 ~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~---~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~ 93 (131)
T 2m2b_A 18 SSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVI---KDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPL 93 (131)
T ss_dssp CCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECC---BCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEE---EcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCc
Confidence 34456789999999999999999999999999977 9999 4778999999999999999 999999999999
Q ss_pred eecCeEEEEEeccCCC
Q 003091 129 VVYEYELKIGWGKSVA 144 (848)
Q Consensus 129 ~i~G~~L~V~~ak~~~ 144 (848)
.|+|+.|+|.||++..
T Consensus 94 ~~~gr~l~V~~a~~~~ 109 (131)
T 2m2b_A 94 TIDGKTINVEFAKGSK 109 (131)
T ss_dssp CGGGCCCCCEECCCSC
T ss_pred cCCCEEEEEEECCCCC
Confidence 9999999999998653
No 77
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.58 E-value=6.2e-15 Score=129.63 Aligned_cols=80 Identities=20% Similarity=0.305 Sum_probs=73.7
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEE
Q 003091 57 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 136 (848)
Q Consensus 57 d~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~ 136 (848)
+...++|||+|||+.+++++|.++|++||.|.+|+|+. +..+|+++|||||+|.+.++|.+|+. ++|..|+|+.|.
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~ 83 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKM---DPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVID 83 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEE---CTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEee---cCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEE
Confidence 35678999999999999999999999999999999984 66789999999999999999999995 588899999999
Q ss_pred EEec
Q 003091 137 IGWG 140 (848)
Q Consensus 137 V~~a 140 (848)
|.||
T Consensus 84 v~~A 87 (87)
T 3s7r_A 84 PKKA 87 (87)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9986
No 78
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=5.4e-15 Score=136.72 Aligned_cols=87 Identities=24% Similarity=0.323 Sum_probs=76.0
Q ss_pred CCccEEEEecCCCCCCHHHHH---HHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeE
Q 003091 58 PQTTNLYVGNLSPQVDENFLL---RTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYE 134 (848)
Q Consensus 58 ~~~t~LfVgNLp~~vte~~L~---~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~ 134 (848)
...++|||+|||+.+++++|. ++|++||.|..|+|+.......+++++|||||+|.+.++|++|+..|||..|+|+.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 346799999999999999999 99999999999999852222223456799999999999999999999999999999
Q ss_pred EEEEeccCCC
Q 003091 135 LKIGWGKSVA 144 (848)
Q Consensus 135 L~V~~ak~~~ 144 (848)
|+|.||++..
T Consensus 93 l~V~~a~~k~ 102 (111)
T 2cpi_A 93 LKASLGTTKY 102 (111)
T ss_dssp EEEESCCCCS
T ss_pred EEEEeccccc
Confidence 9999998764
No 79
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=1.3e-14 Score=129.18 Aligned_cols=78 Identities=22% Similarity=0.328 Sum_probs=72.2
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEE
Q 003091 57 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 136 (848)
Q Consensus 57 d~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~ 136 (848)
....++|||+|||..+++++|..+|++||.|..|+|+. +||||+|.+.++|.+|+..|||..|+|+.|+
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~-----------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 75 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK-----------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMH 75 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS-----------SEEEEEESCHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC-----------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEE
Confidence 45678999999999999999999999999999999983 4999999999999999999999999999999
Q ss_pred EEeccCCCC
Q 003091 137 IGWGKSVAL 145 (848)
Q Consensus 137 V~~ak~~~~ 145 (848)
|.|+++...
T Consensus 76 V~~a~~~~~ 84 (92)
T 2dgt_A 76 VQLSTSRLR 84 (92)
T ss_dssp EEESSCCCS
T ss_pred EEEccCCCC
Confidence 999986643
No 80
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.58 E-value=3.6e-15 Score=142.02 Aligned_cols=84 Identities=29% Similarity=0.447 Sum_probs=78.6
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEE
Q 003091 57 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 136 (848)
Q Consensus 57 d~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~ 136 (848)
.+.+++|||+|||+.+++++|+++|++||.|..|+|++ +..+++++|||||+|.+.++|++|+..|||..|+|+.|+
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~---d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~ 119 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVY---DQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 119 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEEC---CSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEe---cCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34578999999999999999999999999999999994 777889999999999999999999999999999999999
Q ss_pred EEeccCC
Q 003091 137 IGWGKSV 143 (848)
Q Consensus 137 V~~ak~~ 143 (848)
|.|+++.
T Consensus 120 V~~a~~~ 126 (129)
T 2kxn_B 120 VDFSITK 126 (129)
T ss_dssp ESCCSSS
T ss_pred EEEecCC
Confidence 9999865
No 81
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=5.9e-15 Score=129.08 Aligned_cols=76 Identities=29% Similarity=0.626 Sum_probs=71.3
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHc-CCceecCeEE
Q 003091 57 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEM-QGVVVYEYEL 135 (848)
Q Consensus 57 d~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~l-nG~~i~G~~L 135 (848)
++..++|||+|||..+++++|..+|++||.|.+|+|+. ++|||||+|.+.++|..|+..| +|..++|+.|
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~---------~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l 79 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ---------RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRL 79 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG---------GGTEEEEEESSHHHHHHHHHTTTTTCEETTEEC
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC---------CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEE
Confidence 45678999999999999999999999999999999983 5799999999999999999999 9999999999
Q ss_pred EEEecc
Q 003091 136 KIGWGK 141 (848)
Q Consensus 136 ~V~~ak 141 (848)
+|.||+
T Consensus 80 ~v~~ak 85 (85)
T 2ytc_A 80 NVKWGR 85 (85)
T ss_dssp CEEECC
T ss_pred EEEecC
Confidence 999986
No 82
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=4.1e-15 Score=137.79 Aligned_cols=83 Identities=14% Similarity=0.255 Sum_probs=77.3
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEE
Q 003091 58 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 137 (848)
Q Consensus 58 ~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V 137 (848)
...++|||+|||..+++++|.++|++||.|..|+|+. +..+++++|||||+|.+.++|.+|+ .|||..|+|+.|+|
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 98 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIIS---DRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIV 98 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECC---SCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEe---cCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEE
Confidence 4568999999999999999999999999999999994 7778899999999999999999999 99999999999999
Q ss_pred EeccCCC
Q 003091 138 GWGKSVA 144 (848)
Q Consensus 138 ~~ak~~~ 144 (848)
.|+++..
T Consensus 99 ~~a~~~~ 105 (114)
T 2cq4_A 99 QASQAEK 105 (114)
T ss_dssp EEHHHHH
T ss_pred EecCCCc
Confidence 9998653
No 83
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.4e-14 Score=132.32 Aligned_cols=81 Identities=12% Similarity=0.165 Sum_probs=72.9
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcC--CceecCeE
Q 003091 57 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQ--GVVVYEYE 134 (848)
Q Consensus 57 d~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~ln--G~~i~G~~ 134 (848)
.+++++|||+|||+.+++++|..+|++||.|.+|.|+. .+|||||+|.+.++|..|+..|+ +..|.|++
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~---------~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~ 82 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLK---------GKNQAFLELATEEAAITMVNYYSAVTPHLRNQP 82 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEET---------TTTEEEEEESSHHHHHHHHHHHHHSCCEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC---------CCCEEEEEECCHHHHHHHHHHhccCCceECCcE
Confidence 35678999999999999999999999999999999883 37999999999999999999875 67899999
Q ss_pred EEEEeccCCCCC
Q 003091 135 LKIGWGKSVALP 146 (848)
Q Consensus 135 L~V~~ak~~~~p 146 (848)
|+|.||+...+.
T Consensus 83 l~V~~a~~~~~~ 94 (101)
T 2cq1_A 83 IYIQYSNHKELK 94 (101)
T ss_dssp CEEEECSCSSCC
T ss_pred EEEEEcCcccCc
Confidence 999999976653
No 84
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.58 E-value=8.3e-16 Score=136.13 Aligned_cols=81 Identities=20% Similarity=0.398 Sum_probs=72.9
Q ss_pred cEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEec
Q 003091 61 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWG 140 (848)
Q Consensus 61 t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V~~a 140 (848)
++|||+|||.++++++|.++|++||.|.+|+|+. +..+|+++|||||+|.+.+ |..|+..|||..++|+.|+|.||
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a 77 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIY---DRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEA 77 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECC---CSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEE---cCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEc
Confidence 5899999999999999999999999999999994 6678899999999999999 99999999999999999999999
Q ss_pred cCCCC
Q 003091 141 KSVAL 145 (848)
Q Consensus 141 k~~~~ 145 (848)
.+...
T Consensus 78 ~~~~~ 82 (90)
T 2ki2_A 78 NPKKS 82 (90)
T ss_dssp -----
T ss_pred CCCCC
Confidence 87654
No 85
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.58 E-value=5.7e-15 Score=130.19 Aligned_cols=81 Identities=14% Similarity=0.271 Sum_probs=75.8
Q ss_pred CccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEEE
Q 003091 59 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 138 (848)
Q Consensus 59 ~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V~ 138 (848)
..++|||+|||+++++++|.++|++||.|.+|+|+. +..+++++|||||+|.+.++|.+|+ .|||..|+|+.|+|.
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~ 80 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILC---DKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVI 80 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEE---SCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEE
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEe---cCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEE
Confidence 457999999999999999999999999999999984 6678899999999999999999999 999999999999999
Q ss_pred eccCC
Q 003091 139 WGKSV 143 (848)
Q Consensus 139 ~ak~~ 143 (848)
|+++.
T Consensus 81 ~a~~~ 85 (89)
T 3ucg_A 81 PKRTN 85 (89)
T ss_dssp ETTTT
T ss_pred EccCC
Confidence 98753
No 86
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.57 E-value=4.6e-15 Score=141.02 Aligned_cols=81 Identities=16% Similarity=0.246 Sum_probs=73.4
Q ss_pred CCccEEEEecCCCCCCHHHHH----HHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCe
Q 003091 58 PQTTNLYVGNLSPQVDENFLL----RTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEY 133 (848)
Q Consensus 58 ~~~t~LfVgNLp~~vte~~L~----~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~ 133 (848)
+++++|||||||+.+++++|+ ++|++||.|.+|.|+. +++++|||||+|.+.++|..|+..|||..|.|+
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~------~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr 100 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL------SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGN 100 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC------CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc------CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCC
Confidence 447899999999999999865 7999999999998863 577899999999999999999999999999999
Q ss_pred EEEEEeccCCC
Q 003091 134 ELKIGWGKSVA 144 (848)
Q Consensus 134 ~L~V~~ak~~~ 144 (848)
+|+|.||+...
T Consensus 101 ~l~V~~a~~~~ 111 (127)
T 2a3j_A 101 PLVITFSETPQ 111 (127)
T ss_dssp CCEEEECCCCC
T ss_pred EEEEEEccCcc
Confidence 99999998653
No 87
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.7e-15 Score=137.61 Aligned_cols=84 Identities=19% Similarity=0.417 Sum_probs=78.1
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEE
Q 003091 58 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 137 (848)
Q Consensus 58 ~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V 137 (848)
...++|||+|||..+++++|..+|++||.|..|+|++ +..+|.++|||||+|.+.++|.+|+..|||..|+|+.|+|
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~---~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 82 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVY---DRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRV 82 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEE---ETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEE
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEe---CCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEE
Confidence 4568999999999999999999999999999999994 6678899999999999999999999999999999999999
Q ss_pred EeccCCC
Q 003091 138 GWGKSVA 144 (848)
Q Consensus 138 ~~ak~~~ 144 (848)
.||++..
T Consensus 83 ~~a~~~~ 89 (104)
T 1p1t_A 83 DNAASEK 89 (104)
T ss_dssp EETTCTT
T ss_pred EeCCCcc
Confidence 9988653
No 88
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.57 E-value=1.2e-14 Score=138.89 Aligned_cols=82 Identities=28% Similarity=0.477 Sum_probs=76.1
Q ss_pred CCCCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEE
Q 003091 56 GDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYEL 135 (848)
Q Consensus 56 ~d~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L 135 (848)
..+..++|||+|||+.+++++|.++|++||.|..|+|+. +..+++++|||||+|.+.++|.+|+..|||..|+|+.|
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 135 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPL---DYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTI 135 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCC---CTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEee---cCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 445678999999999999999999999999999999984 66788999999999999999999999999999999999
Q ss_pred EEEec
Q 003091 136 KIGWG 140 (848)
Q Consensus 136 ~V~~a 140 (848)
+|.||
T Consensus 136 ~v~~A 140 (140)
T 2ku7_A 136 RVNLA 140 (140)
T ss_dssp EEEC-
T ss_pred EEEeC
Confidence 99986
No 89
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=1.2e-14 Score=129.00 Aligned_cols=80 Identities=13% Similarity=0.103 Sum_probs=74.9
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEE
Q 003091 58 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 137 (848)
Q Consensus 58 ~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V 137 (848)
...++|||+|||.++++++|+++|++| .|.+|+|+. + .+|+++|||||+|.+.++|.+|+. |||..|+|+.|.|
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~---~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v 81 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVR---N-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEV 81 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEE---C-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEE
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEE---C-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEE
Confidence 457899999999999999999999999 999999994 5 678899999999999999999999 9999999999999
Q ss_pred EeccCC
Q 003091 138 GWGKSV 143 (848)
Q Consensus 138 ~~ak~~ 143 (848)
.||++.
T Consensus 82 ~~a~~~ 87 (91)
T 2dgw_A 82 FREKSG 87 (91)
T ss_dssp EEESSC
T ss_pred EECCcC
Confidence 999865
No 90
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=8.5e-15 Score=137.53 Aligned_cols=81 Identities=12% Similarity=0.167 Sum_probs=73.7
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCC--ceecCeE
Q 003091 57 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQG--VVVYEYE 134 (848)
Q Consensus 57 d~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG--~~i~G~~ 134 (848)
.+++++|||+|||+.+++++|+++|++||.|.+|+|+. .+|||||+|.+.++|.+|+..|++ ..|.|++
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~---------~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~ 98 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLK---------GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQP 98 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEG---------GGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC---------CCCEEEEEECCHHHHHHHHHHhccCCceECCeE
Confidence 45678999999999999999999999999999999983 379999999999999999999985 6899999
Q ss_pred EEEEeccCCCCC
Q 003091 135 LKIGWGKSVALP 146 (848)
Q Consensus 135 L~V~~ak~~~~p 146 (848)
|+|.||++..+.
T Consensus 99 l~V~~a~~k~~~ 110 (119)
T 2ad9_A 99 IYIQFSNHKELK 110 (119)
T ss_dssp CEEEECSSSSCC
T ss_pred EEEEEccCCCCC
Confidence 999999977654
No 91
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=4.3e-15 Score=136.04 Aligned_cols=81 Identities=12% Similarity=0.177 Sum_probs=74.8
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEE
Q 003091 57 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 136 (848)
Q Consensus 57 d~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~ 136 (848)
+...++|||||||+++|+++|.++|++||.|.+|.|+. +.. |+++|||||+|.+.++|.+|+. ++|..|+|+.|.
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~---d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~ 82 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRR---TLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLL 82 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEEC---CCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCE
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEE---CCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEE
Confidence 44578999999999999999999999999999999994 555 8899999999999999999998 999999999999
Q ss_pred EEeccC
Q 003091 137 IGWGKS 142 (848)
Q Consensus 137 V~~ak~ 142 (848)
|.|++.
T Consensus 83 V~~~~~ 88 (103)
T 1s79_A 83 ILFKDD 88 (103)
T ss_dssp EEEHHH
T ss_pred EEEchH
Confidence 999764
No 92
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.2e-14 Score=135.14 Aligned_cols=83 Identities=22% Similarity=0.321 Sum_probs=77.2
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEE
Q 003091 58 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 137 (848)
Q Consensus 58 ~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V 137 (848)
...++|||+|||..+++++|..+|++||.|..|+|+. +..+++++|||||+|.+.++|.+|+.. +|..|+|+.|+|
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~---~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V 100 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMR---DPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEP 100 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEEC---CTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEE---CCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEE
Confidence 4468999999999999999999999999999999994 677889999999999999999999987 999999999999
Q ss_pred EeccCCC
Q 003091 138 GWGKSVA 144 (848)
Q Consensus 138 ~~ak~~~ 144 (848)
.|+++..
T Consensus 101 ~~a~~~~ 107 (116)
T 1x4b_A 101 KRAVARE 107 (116)
T ss_dssp ECCSSCC
T ss_pred EECCCCc
Confidence 9998664
No 93
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=8e-15 Score=136.25 Aligned_cols=83 Identities=17% Similarity=0.230 Sum_probs=73.4
Q ss_pred CCCCCCccEEEEecCCCC-CCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCC--cee
Q 003091 54 DDGDPQTTNLYVGNLSPQ-VDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQG--VVV 130 (848)
Q Consensus 54 ~~~d~~~t~LfVgNLp~~-vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG--~~i 130 (848)
....+.+++|||+|||++ +++++|..+|++||.|.+|.|+ +++|||||+|.+.++|..|+..||+ ..|
T Consensus 19 ~~~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~---------~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l 89 (112)
T 1x4f_A 19 DQKQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILM---------RMKSQAFIEMETREDAMAMVDHCLKKALWF 89 (112)
T ss_dssp CCSSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEE---------TTTTEEEEECSSHHHHHHHHHHHHHSCCCS
T ss_pred cccCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEe---------cCCCEEEEEECCHHHHHHHHHHhccCCceE
Confidence 333556889999999998 9999999999999999999998 3579999999999999999998865 569
Q ss_pred cCeEEEEEeccCCCC
Q 003091 131 YEYELKIGWGKSVAL 145 (848)
Q Consensus 131 ~G~~L~V~~ak~~~~ 145 (848)
.|+.|+|.||+....
T Consensus 90 ~Gr~l~V~~a~~~~~ 104 (112)
T 1x4f_A 90 QGRCVKVDLSEKYKK 104 (112)
T ss_dssp SSSCCEEEEECSCSS
T ss_pred CCEEEEEEECccccc
Confidence 999999999986643
No 94
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=8.2e-15 Score=134.00 Aligned_cols=77 Identities=18% Similarity=0.225 Sum_probs=70.5
Q ss_pred CccEEEEecCCC-CCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCc--eecCeEE
Q 003091 59 QTTNLYVGNLSP-QVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGV--VVYEYEL 135 (848)
Q Consensus 59 ~~t~LfVgNLp~-~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~--~i~G~~L 135 (848)
++++|||+|||+ .+++++|..+|++||.|.+|.|+. .++||||+|.+.++|..|+..|||. .|.|++|
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~---------~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 84 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILN---------KINEAFIEMATTEDAQAAVDYYTTTPALVFGKPV 84 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECS---------SSSCEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEc---------CCCEEEEEECCHHHHHHHHHHHcCCCceECCcEE
Confidence 578999999999 999999999999999999999983 4589999999999999999999975 4999999
Q ss_pred EEEeccCCC
Q 003091 136 KIGWGKSVA 144 (848)
Q Consensus 136 ~V~~ak~~~ 144 (848)
+|.||+...
T Consensus 85 ~V~~a~~~~ 93 (102)
T 1x4d_A 85 RVHLSQKYK 93 (102)
T ss_dssp EEEEECCCT
T ss_pred EEEECCCCC
Confidence 999998643
No 95
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=8.6e-15 Score=134.25 Aligned_cols=87 Identities=10% Similarity=0.319 Sum_probs=78.3
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhccCCC-eeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcC--CceecCeE
Q 003091 58 PQTTNLYVGNLSPQVDENFLLRTFGRFGP-IASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQ--GVVVYEYE 134 (848)
Q Consensus 58 ~~~t~LfVgNLp~~vte~~L~~~F~~fG~-I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~ln--G~~i~G~~ 134 (848)
...++|||+|||..+++++|.++|++||. |.+|.|+. .+..+|+++|||||+|.+.++|..|+..|| +..|+|+.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~--~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~ 83 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYA--SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQ 83 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCS--SSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBC
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEc--cCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCe
Confidence 35789999999999999999999999998 99998872 366788999999999999999999999996 58999999
Q ss_pred EEEEeccCCCCC
Q 003091 135 LKIGWGKSVALP 146 (848)
Q Consensus 135 L~V~~ak~~~~p 146 (848)
|+|.||++...+
T Consensus 84 l~V~~a~~~~~~ 95 (109)
T 2dis_A 84 IAVDWAEPEIDV 95 (109)
T ss_dssp CEEEESCSSCST
T ss_pred EEEEEcCCCCCc
Confidence 999999876543
No 96
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.56 E-value=9.5e-15 Score=142.92 Aligned_cols=85 Identities=27% Similarity=0.409 Sum_probs=79.2
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEE
Q 003091 57 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 136 (848)
Q Consensus 57 d~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~ 136 (848)
....++|||+|||+.+++++|..+|++||.|.+|+|+. +..+|+++|||||+|.+.++|..|+..|||..|+|+.|+
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~---~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 143 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPR---DRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELR 143 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCC---CSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEee---cCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 35578999999999999999999999999999999984 667899999999999999999999999999999999999
Q ss_pred EEeccCCC
Q 003091 137 IGWGKSVA 144 (848)
Q Consensus 137 V~~ak~~~ 144 (848)
|.||++..
T Consensus 144 v~~a~~~~ 151 (158)
T 2kn4_A 144 VQMARYGR 151 (158)
T ss_dssp EEEECCSS
T ss_pred EEECCCCC
Confidence 99998653
No 97
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.56 E-value=7.8e-15 Score=129.67 Aligned_cols=74 Identities=16% Similarity=0.226 Sum_probs=70.3
Q ss_pred CccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEEE
Q 003091 59 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 138 (848)
Q Consensus 59 ~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V~ 138 (848)
.+..||||||++.+|+++|+++|.+||+|.+++++. ++|||||+|.+.++|..|+..|||..++|+.|+|.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~---------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~ 76 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL---------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAE 76 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET---------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC---------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 467899999999999999999999999999999983 68999999999999999999999999999999999
Q ss_pred ecc
Q 003091 139 WGK 141 (848)
Q Consensus 139 ~ak 141 (848)
+|.
T Consensus 77 ~A~ 79 (89)
T 2wbr_A 77 SPS 79 (89)
T ss_dssp CCC
T ss_pred ECC
Confidence 984
No 98
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=2.2e-14 Score=129.75 Aligned_cols=82 Identities=16% Similarity=0.215 Sum_probs=73.4
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEE
Q 003091 57 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 136 (848)
Q Consensus 57 d~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~ 136 (848)
+...++|||+|||+.+++++|+++|++||.| +|+. + .+++++|||||+|.+.++|.+|+..|||..|+|+.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~---~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 84 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQ---N-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIR 84 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCB---C-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEE---C-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEE
Confidence 4467899999999999999999999999977 4552 3 5788999999999999999999999999999999999
Q ss_pred EEeccCCCC
Q 003091 137 IGWGKSVAL 145 (848)
Q Consensus 137 V~~ak~~~~ 145 (848)
|.|+++...
T Consensus 85 v~~a~~~~~ 93 (101)
T 2fc9_A 85 LELQGPRGS 93 (101)
T ss_dssp EEECSSCCC
T ss_pred EEEcCCCCC
Confidence 999987643
No 99
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.56 E-value=3.4e-15 Score=133.36 Aligned_cols=83 Identities=20% Similarity=0.208 Sum_probs=74.7
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEE
Q 003091 57 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 136 (848)
Q Consensus 57 d~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~ 136 (848)
.+..++|||+|||+.+++++|+++|++||.|..+.++ .+..+++++|||||+|.+.++|.+|+..|||..|+|+.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~---~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~ 88 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCL---KYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVK 88 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEE---EECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEE---EeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEE
Confidence 3456899999999999999999999999999988888 3667889999999999999999999999999999999999
Q ss_pred EEeccC
Q 003091 137 IGWGKS 142 (848)
Q Consensus 137 V~~ak~ 142 (848)
|.++.+
T Consensus 89 v~~a~s 94 (95)
T 2ek1_A 89 LSGPSS 94 (95)
T ss_dssp EECCC-
T ss_pred EEeccC
Confidence 999764
No 100
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=1.4e-14 Score=130.26 Aligned_cols=77 Identities=29% Similarity=0.471 Sum_probs=71.8
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceec--CeEE
Q 003091 58 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVY--EYEL 135 (848)
Q Consensus 58 ~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~--G~~L 135 (848)
+.+++|||+|||..+++++|.++|++||.|.+|.|+. .++||||+|.+.++|++|+..|||..|. |+.|
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~---------~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l 85 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVK---------GDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRL 85 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECS---------SSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeC---------CCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEE
Confidence 4568999999999999999999999999999999983 3789999999999999999999999999 9999
Q ss_pred EEEeccCC
Q 003091 136 KIGWGKSV 143 (848)
Q Consensus 136 ~V~~ak~~ 143 (848)
+|.|+++.
T Consensus 86 ~V~~a~~~ 93 (97)
T 1why_A 86 RVDFAKSG 93 (97)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 99999865
No 101
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.56 E-value=1.2e-14 Score=134.12 Aligned_cols=85 Identities=21% Similarity=0.301 Sum_probs=74.7
Q ss_pred CCCCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEE
Q 003091 56 GDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYEL 135 (848)
Q Consensus 56 ~d~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L 135 (848)
.....++|||+|||.++++++|..+|++||.|.+|+|+. +..+|+++|||||+|.+.++|.+|+..+ |..|+|+.|
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~---~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l 96 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMR---DPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTI 96 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECC---CTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEE---CCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEE
Confidence 345678999999999999999999999999999999994 7778999999999999999999999876 599999999
Q ss_pred EEEeccCCC
Q 003091 136 KIGWGKSVA 144 (848)
Q Consensus 136 ~V~~ak~~~ 144 (848)
+|.|+.+..
T Consensus 97 ~V~~a~~~~ 105 (109)
T 2rs2_A 97 DPKVAFPRR 105 (109)
T ss_dssp EEEECCCCC
T ss_pred EEEEccCCC
Confidence 999998654
No 102
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.56 E-value=6.7e-15 Score=133.24 Aligned_cols=77 Identities=25% Similarity=0.489 Sum_probs=72.5
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEE
Q 003091 57 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 136 (848)
Q Consensus 57 d~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~ 136 (848)
.+.+++|||+|||.++++++|..+|++||.|.+|+|+ +++|||||+|.+.++|..|+..|||..|+|+.|+
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~---------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 94 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY---------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLR 94 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE---------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECC
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe---------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 3457899999999999999999999999999999998 3679999999999999999999999999999999
Q ss_pred EEeccC
Q 003091 137 IGWGKS 142 (848)
Q Consensus 137 V~~ak~ 142 (848)
|.||++
T Consensus 95 V~~a~~ 100 (101)
T 2la4_A 95 TGWGKE 100 (101)
T ss_dssp CCBCCC
T ss_pred EEeccC
Confidence 999985
No 103
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=4.4e-14 Score=129.78 Aligned_cols=77 Identities=13% Similarity=0.175 Sum_probs=71.7
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecC-----
Q 003091 58 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYE----- 132 (848)
Q Consensus 58 ~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G----- 132 (848)
...++|||+|||+++++++|+++|++||.|..|+|+. + |||||+|.+.++|++||..|||..|+|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~---~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~ 82 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYR---D-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGET 82 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEET---T-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEec---C-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcc
Confidence 3568999999999999999999999999999999984 2 899999999999999999999999999
Q ss_pred eEEEEEeccCCC
Q 003091 133 YELKIGWGKSVA 144 (848)
Q Consensus 133 ~~L~V~~ak~~~ 144 (848)
+.|+|.||++..
T Consensus 83 ~~i~V~~a~~~~ 94 (108)
T 1x4c_A 83 AYIRVKVDGPRS 94 (108)
T ss_dssp EEEEEEESSCCS
T ss_pred eEEEEEeCCCCC
Confidence 999999998743
No 104
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1.4e-14 Score=133.23 Aligned_cols=80 Identities=21% Similarity=0.473 Sum_probs=74.3
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEE
Q 003091 57 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 136 (848)
Q Consensus 57 d~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~ 136 (848)
.+..++|||+|||..+++++|..+|++||.|.+|+|+. .+|||||+|.+.++|.+|+..|||..|+|+.|+
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~---------~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 92 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFP---------EKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVK 92 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEET---------TTTEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeC---------CCCEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 45678999999999999999999999999999999994 379999999999999999999999999999999
Q ss_pred EEeccCCCC
Q 003091 137 IGWGKSVAL 145 (848)
Q Consensus 137 V~~ak~~~~ 145 (848)
|.||++...
T Consensus 93 v~~a~~~~~ 101 (109)
T 1x4g_A 93 CYWGKESPD 101 (109)
T ss_dssp EECCCCCCS
T ss_pred EEecCCCCC
Confidence 999987653
No 105
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=5.7e-15 Score=136.78 Aligned_cols=79 Identities=18% Similarity=0.236 Sum_probs=73.0
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEE
Q 003091 58 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 137 (848)
Q Consensus 58 ~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V 137 (848)
...++|||+|||+.+++++|+.+|++||.|..|.|+ .+++||||+|.+.++|..|+..|||..|+|+.|+|
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~---------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 78 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLP---------EGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYL 78 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECC---------SSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEe---------CCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEE
Confidence 457899999999999999999999999999999887 26789999999999999999999999999999999
Q ss_pred EeccCCCC
Q 003091 138 GWGKSVAL 145 (848)
Q Consensus 138 ~~ak~~~~ 145 (848)
.||+....
T Consensus 79 ~~a~~~~~ 86 (111)
T 1whx_A 79 EWAPIGVF 86 (111)
T ss_dssp EEEETTTT
T ss_pred EECCCCcc
Confidence 99987544
No 106
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=2.4e-14 Score=129.13 Aligned_cols=78 Identities=26% Similarity=0.462 Sum_probs=72.9
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEE
Q 003091 58 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 137 (848)
Q Consensus 58 ~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V 137 (848)
+..++|||+|||+.+++++|+.+|++||.|..|+|+. .+|||||+|.+.++|.+|+..|||..|+|+.|+|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~---------~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v 83 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHK---------DKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRV 83 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEET---------TTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEec---------CCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEE
Confidence 4578999999999999999999999999999999983 4799999999999999999999999999999999
Q ss_pred EeccCCC
Q 003091 138 GWGKSVA 144 (848)
Q Consensus 138 ~~ak~~~ 144 (848)
.|+++..
T Consensus 84 ~~a~~~~ 90 (99)
T 2cpj_A 84 RFACHSA 90 (99)
T ss_dssp EESSCCS
T ss_pred EEcCCCC
Confidence 9998654
No 107
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=2.8e-14 Score=132.04 Aligned_cols=83 Identities=23% Similarity=0.370 Sum_probs=75.7
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCcee------
Q 003091 57 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVV------ 130 (848)
Q Consensus 57 d~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i------ 130 (848)
+...++|||+|||+.+++++|..+|++||.|.+|+|+. +. ++.++|||||+|.+.++|.+|+..|||..|
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~---~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~ 97 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILR---DS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGV 97 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEE---CS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEE---CC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccc
Confidence 45678999999999999999999999999999999994 55 788999999999999999999999999999
Q ss_pred --cCeEEEEEeccCC
Q 003091 131 --YEYELKIGWGKSV 143 (848)
Q Consensus 131 --~G~~L~V~~ak~~ 143 (848)
.|++|.|.||++.
T Consensus 98 ~~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 98 SAPTEPLLCKFSGPS 112 (114)
T ss_dssp CCCSSCBEEEECCCS
T ss_pred cCCCCceeEEccCCC
Confidence 5788999998743
No 108
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.55 E-value=3.3e-14 Score=129.32 Aligned_cols=77 Identities=27% Similarity=0.460 Sum_probs=71.6
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEE
Q 003091 58 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 137 (848)
Q Consensus 58 ~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V 137 (848)
...++|||+|||+++++++|.++|++||.|..|+|+ ++||||+|.+.++|.+|+..|||..|+|+.|+|
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~-----------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 77 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL-----------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEI 77 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC-----------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-----------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEE
Confidence 457899999999999999999999999999999987 259999999999999999999999999999999
Q ss_pred EeccCCCC
Q 003091 138 GWGKSVAL 145 (848)
Q Consensus 138 ~~ak~~~~ 145 (848)
.|+++...
T Consensus 78 ~~a~~~~~ 85 (103)
T 2dgu_A 78 VFAKPPDQ 85 (103)
T ss_dssp EECCCCCC
T ss_pred EEcCCCcc
Confidence 99987653
No 109
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.55 E-value=3.6e-15 Score=135.16 Aligned_cols=82 Identities=16% Similarity=0.271 Sum_probs=73.5
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCccc-ccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEE
Q 003091 57 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEE-ERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYEL 135 (848)
Q Consensus 57 d~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~-~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L 135 (848)
....++|||+|||.++++++|.++|++|| |.+|+|+. +. .+|+++|||||+|.+.++|.+|+ .|||..|+|+.|
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~---~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l 90 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPR---EPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRI 90 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSC---CTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEe---cCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEE
Confidence 34578999999999999999999999999 99999984 55 58899999999999999999999 999999999999
Q ss_pred EEEeccCC
Q 003091 136 KIGWGKSV 143 (848)
Q Consensus 136 ~V~~ak~~ 143 (848)
+|.||++.
T Consensus 91 ~V~~a~~~ 98 (100)
T 2j76_E 91 RVDVADQA 98 (100)
T ss_dssp CCEECCCS
T ss_pred EEEeccCC
Confidence 99999864
No 110
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.55 E-value=1.1e-14 Score=133.32 Aligned_cols=81 Identities=16% Similarity=0.225 Sum_probs=74.2
Q ss_pred CCccEEEEecCCCCC------CHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceec
Q 003091 58 PQTTNLYVGNLSPQV------DENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVY 131 (848)
Q Consensus 58 ~~~t~LfVgNLp~~v------te~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~ 131 (848)
...++|||||||+.+ ++++|..+|++||.|.+|.|+ ..+|+++|||||+|.+.++|.+|+..|||..|+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~-----~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~ 87 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-----EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLD 87 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC-----CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECS
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee-----CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccC
Confidence 346899999999999 789999999999999999887 257889999999999999999999999999999
Q ss_pred Ce-EEEEEeccCC
Q 003091 132 EY-ELKIGWGKSV 143 (848)
Q Consensus 132 G~-~L~V~~ak~~ 143 (848)
|+ .|+|.||...
T Consensus 88 g~~~l~V~~a~~~ 100 (105)
T 2nlw_A 88 KQHTFRVNLFTDF 100 (105)
T ss_dssp TTCEEEEECSCCC
T ss_pred CCceEEEEEcchH
Confidence 98 9999998754
No 111
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.55 E-value=1.2e-14 Score=143.96 Aligned_cols=85 Identities=14% Similarity=0.323 Sum_probs=78.5
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEE
Q 003091 57 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 136 (848)
Q Consensus 57 d~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~ 136 (848)
...+++|||+|||+.+++++|..+|++||.|..|.|+ .+..+|.++|||||+|.+.++|.+||..|||..|+|+.|.
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~---~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 145 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLN---LDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQ 145 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEE---ECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEE---ecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 3457899999999999999999999999999999999 4667889999999999999999999999999999999999
Q ss_pred EEeccCCC
Q 003091 137 IGWGKSVA 144 (848)
Q Consensus 137 V~~ak~~~ 144 (848)
|.||++..
T Consensus 146 V~~a~~~~ 153 (165)
T 1rk8_A 146 VDWCFVKG 153 (165)
T ss_dssp EEESEECC
T ss_pred EEEecCCC
Confidence 99998654
No 112
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=2.4e-14 Score=126.91 Aligned_cols=77 Identities=18% Similarity=0.376 Sum_probs=72.0
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEE
Q 003091 58 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 137 (848)
Q Consensus 58 ~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V 137 (848)
+..++|||+|||.++++++|+.+|++||.|.+|+|+ ++||||+|.+.++|.+|+..|||..|+|+.|+|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-----------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 74 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-----------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINV 74 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-----------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-----------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEE
Confidence 457899999999999999999999999999999987 489999999999999999999999999999999
Q ss_pred EeccCCCC
Q 003091 138 GWGKSVAL 145 (848)
Q Consensus 138 ~~ak~~~~ 145 (848)
.|+++...
T Consensus 75 ~~a~~~~~ 82 (90)
T 2dnq_A 75 EASKNKSK 82 (90)
T ss_dssp ECSSCCCC
T ss_pred EECCCCCC
Confidence 99987643
No 113
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.55 E-value=4.5e-15 Score=126.80 Aligned_cols=75 Identities=19% Similarity=0.327 Sum_probs=70.7
Q ss_pred EEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEec
Q 003091 62 NLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWG 140 (848)
Q Consensus 62 ~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V~~a 140 (848)
+|||+|||+++++++|..+|++||.|.+|.|+. +..+++++|||||+|.+.++|++|+. |||..|+|+.|.|.||
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMF---DKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCB---CSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEe---cCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 589999999999999999999999999999984 66788999999999999999999997 9999999999999986
No 114
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.54 E-value=7.5e-15 Score=131.64 Aligned_cols=81 Identities=25% Similarity=0.460 Sum_probs=74.6
Q ss_pred CCccEEEEecCCCCCCHHHHH----HHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCe
Q 003091 58 PQTTNLYVGNLSPQVDENFLL----RTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEY 133 (848)
Q Consensus 58 ~~~t~LfVgNLp~~vte~~L~----~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~ 133 (848)
+.+++|||+|||.++++++|. .+|++||.|..|.|+. +|.++|||||+|.+.++|..|+..|||..|+|+
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~------~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 79 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR------SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK 79 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH------HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc------CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCc
Confidence 457899999999999999999 9999999999998872 567889999999999999999999999999999
Q ss_pred EEEEEeccCCC
Q 003091 134 ELKIGWGKSVA 144 (848)
Q Consensus 134 ~L~V~~ak~~~ 144 (848)
.|+|.|+++..
T Consensus 80 ~l~v~~a~~~~ 90 (97)
T 1nu4_A 80 PMRIQYAKTDS 90 (97)
T ss_dssp ECEEEECSSCC
T ss_pred EEEEEEccCCC
Confidence 99999998653
No 115
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.54 E-value=1.3e-14 Score=134.81 Aligned_cols=78 Identities=9% Similarity=0.000 Sum_probs=71.9
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhccCC-CeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEE
Q 003091 58 PQTTNLYVGNLSPQVDENFLLRTFGRFG-PIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 136 (848)
Q Consensus 58 ~~~t~LfVgNLp~~vte~~L~~~F~~fG-~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~ 136 (848)
+..++|||+|||+++++++|+++|++|| .|..|.|+. +.++|||||+|.+.++|++|+..|||..|+|+.|+
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~-------~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~ 98 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT-------RDFDGTGALEFPSEEILVEALERLNNIEFRGSVIT 98 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS-------CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc-------CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 4568999999999999999999999999 899999862 24789999999999999999999999999999999
Q ss_pred EEeccC
Q 003091 137 IGWGKS 142 (848)
Q Consensus 137 V~~ak~ 142 (848)
|.+++.
T Consensus 99 V~~a~~ 104 (111)
T 2jvr_A 99 VERDDN 104 (111)
T ss_dssp EEESCC
T ss_pred EEECCC
Confidence 999874
No 116
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.54 E-value=6.3e-15 Score=141.36 Aligned_cols=85 Identities=27% Similarity=0.411 Sum_probs=78.8
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEE
Q 003091 58 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 137 (848)
Q Consensus 58 ~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V 137 (848)
..+++|||+|||.++++++|.++|++||.|..|+|+. +..+++++|||||+|.+.++|++|+..|||..|+|+.|+|
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~---~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 121 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPR---DRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRV 121 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCC---CSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEe---cCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 4578999999999999999999999999999999984 6678899999999999999999999999999999999999
Q ss_pred EeccCCCC
Q 003091 138 GWGKSVAL 145 (848)
Q Consensus 138 ~~ak~~~~ 145 (848)
.|+++...
T Consensus 122 ~~a~~~~~ 129 (135)
T 2lea_A 122 QMARYGRP 129 (135)
T ss_dssp EECCCCCC
T ss_pred EECCCCCC
Confidence 99986543
No 117
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=1.5e-14 Score=130.08 Aligned_cols=78 Identities=23% Similarity=0.476 Sum_probs=71.6
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEE
Q 003091 58 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 137 (848)
Q Consensus 58 ~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V 137 (848)
+..++|||+|||+.+++++|+.+|++||.|. +.+++ ++++|||||+|.+.++|++|+..|||..|+|+.|+|
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~-------~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 88 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW-------QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRV 88 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE-------ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc-------CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 4578999999999999999999999999997 77772 368899999999999999999999999999999999
Q ss_pred EeccCC
Q 003091 138 GWGKSV 143 (848)
Q Consensus 138 ~~ak~~ 143 (848)
.|+++.
T Consensus 89 ~~a~~~ 94 (97)
T 2e5j_A 89 ALARQQ 94 (97)
T ss_dssp EECCCC
T ss_pred EEcCCC
Confidence 999865
No 118
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=6.3e-15 Score=126.31 Aligned_cols=76 Identities=24% Similarity=0.388 Sum_probs=72.1
Q ss_pred cEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEec
Q 003091 61 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWG 140 (848)
Q Consensus 61 t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V~~a 140 (848)
++|||+|||+++++++|..+|++||.|.+|.|+. +..+|+++|||||.|.+.++|.+|+..++ ..++|+.|+|.||
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~---~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMR---DPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEEC---CCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEec---CCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 5799999999999999999999999999999984 66788999999999999999999999999 9999999999997
No 119
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=2.1e-14 Score=133.38 Aligned_cols=82 Identities=10% Similarity=0.045 Sum_probs=75.4
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhccCCCe-eEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEE
Q 003091 58 PQTTNLYVGNLSPQVDENFLLRTFGRFGPI-ASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 136 (848)
Q Consensus 58 ~~~t~LfVgNLp~~vte~~L~~~F~~fG~I-~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~ 136 (848)
...++|||+|||+.+++++|.++|+.||.| .+|+|+. +. +|+++|||||+|.+.++|.+||.. ||..|+|+.|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~---d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~ 87 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLV---DN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAF 87 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECC---CT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEE---CC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEE
Confidence 456799999999999999999999999999 8999984 65 889999999999999999999987 99999999999
Q ss_pred EEeccCCC
Q 003091 137 IGWGKSVA 144 (848)
Q Consensus 137 V~~ak~~~ 144 (848)
|.|+.+..
T Consensus 88 v~~a~~~~ 95 (114)
T 2cpy_A 88 VHVVTLED 95 (114)
T ss_dssp EEEECHHH
T ss_pred EEECCHHH
Confidence 99987654
No 120
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=3.2e-14 Score=126.05 Aligned_cols=77 Identities=22% Similarity=0.320 Sum_probs=71.4
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEE
Q 003091 57 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 136 (848)
Q Consensus 57 d~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~ 136 (848)
....++|||+|||.++++++|..+|++||.|.+|+|+. +||||+|.+.++|.+|+..|||..|+|+.|+
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~-----------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 74 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK-----------DYAFVHMEKEADAKAAIAQLNGKEVKGKRIN 74 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS-----------SCEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC-----------CEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 34578999999999999999999999999999999983 4999999999999999999999999999999
Q ss_pred EEeccCCC
Q 003091 137 IGWGKSVA 144 (848)
Q Consensus 137 V~~ak~~~ 144 (848)
|.|+++..
T Consensus 75 v~~a~~~~ 82 (90)
T 2dnp_A 75 VELSTKGQ 82 (90)
T ss_dssp EEESCCCC
T ss_pred EEECCCCC
Confidence 99998653
No 121
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.53 E-value=2.4e-14 Score=131.97 Aligned_cols=79 Identities=30% Similarity=0.497 Sum_probs=72.5
Q ss_pred CCCCCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeE
Q 003091 55 DGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYE 134 (848)
Q Consensus 55 ~~d~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~ 134 (848)
..+..+++|||+|||.++++++|..+|++||.|..|+|+ +|||||+|.+.++|.+|+..|||..|+|+.
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-----------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 94 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-----------NGFAFVEFEEAESAAKAIEEVHGKSFANQP 94 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-----------TTEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-----------CCEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 345668899999999999999999999999999999987 489999999999999999999999999999
Q ss_pred EEEEeccCCC
Q 003091 135 LKIGWGKSVA 144 (848)
Q Consensus 135 L~V~~ak~~~ 144 (848)
|+|.|+++..
T Consensus 95 l~V~~a~~~~ 104 (108)
T 2jvo_A 95 LEVVYSKLPA 104 (108)
T ss_dssp CEEESCSCCC
T ss_pred EEEEEecCCC
Confidence 9999998654
No 122
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.53 E-value=1.7e-14 Score=135.49 Aligned_cols=81 Identities=20% Similarity=0.298 Sum_probs=75.8
Q ss_pred CccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEEE
Q 003091 59 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 138 (848)
Q Consensus 59 ~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V~ 138 (848)
..++|||+|||.++++++|.++|++||.|.+|+|+. +..++.++|||||+|.+.++|.+|+ .|||..|+|+.|+|.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 110 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILC---DKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVL 110 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEE---ECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEe---cCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEE
Confidence 467999999999999999999999999999999994 6678899999999999999999999 899999999999999
Q ss_pred eccCC
Q 003091 139 WGKSV 143 (848)
Q Consensus 139 ~ak~~ 143 (848)
|+++.
T Consensus 111 ~a~~~ 115 (124)
T 2jwn_A 111 PKRTN 115 (124)
T ss_dssp ESSCC
T ss_pred ECCCC
Confidence 98853
No 123
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=5.4e-14 Score=127.35 Aligned_cols=82 Identities=24% Similarity=0.414 Sum_probs=73.5
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEE
Q 003091 57 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 136 (848)
Q Consensus 57 d~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~ 136 (848)
....++|||+|||..+++++|+++|+.|+ .|+++. +..+++++|||||+|.+.++|.+|+..|||..|+|+.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~---~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVT---DRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVT 85 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEE---CSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEe---cCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 34678999999999999999999999884 677773 666889999999999999999999999999999999999
Q ss_pred EEeccCCC
Q 003091 137 IGWGKSVA 144 (848)
Q Consensus 137 V~~ak~~~ 144 (848)
|.||++..
T Consensus 86 V~~a~~~~ 93 (102)
T 2fc8_A 86 LDWAKPKG 93 (102)
T ss_dssp EEECCCCC
T ss_pred EEEecCCC
Confidence 99998654
No 124
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=2e-14 Score=128.01 Aligned_cols=77 Identities=23% Similarity=0.372 Sum_probs=70.0
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhccCCC-eeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCC-ceecCeEE
Q 003091 58 PQTTNLYVGNLSPQVDENFLLRTFGRFGP-IASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQG-VVVYEYEL 135 (848)
Q Consensus 58 ~~~t~LfVgNLp~~vte~~L~~~F~~fG~-I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG-~~i~G~~L 135 (848)
...++|||+|||+++++++|+++|++||. |..+.++ ++|||||+|.+.++|++|+..||| ..|+|+.|
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~----------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l 75 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL----------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIM 75 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE----------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc----------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEE
Confidence 45689999999999999999999999999 6666664 579999999999999999999999 99999999
Q ss_pred EEEeccCCC
Q 003091 136 KIGWGKSVA 144 (848)
Q Consensus 136 ~V~~ak~~~ 144 (848)
+|.|+++..
T Consensus 76 ~v~~a~~~~ 84 (93)
T 2cqh_A 76 EVDYSVSKK 84 (93)
T ss_dssp EEEECCCCC
T ss_pred EEEEccCcc
Confidence 999998653
No 125
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.2e-13 Score=124.13 Aligned_cols=76 Identities=25% Similarity=0.435 Sum_probs=70.5
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEE
Q 003091 58 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 137 (848)
Q Consensus 58 ~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V 137 (848)
..+++|||+|| .+++++|+.+|++||.|.+|.|. +++|||||+|.+.++|.+|+..|||..|+|+.|+|
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~---------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 81 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD---------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKV 81 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE---------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec---------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 45789999996 89999999999999999999986 47799999999999999999999999999999999
Q ss_pred EeccCCC
Q 003091 138 GWGKSVA 144 (848)
Q Consensus 138 ~~ak~~~ 144 (848)
.||++..
T Consensus 82 ~~a~~~~ 88 (97)
T 1x5p_A 82 NIARKQP 88 (97)
T ss_dssp ECCSSCC
T ss_pred EECCCCC
Confidence 9998664
No 126
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=5.8e-14 Score=128.23 Aligned_cols=83 Identities=10% Similarity=0.093 Sum_probs=75.0
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhccCCCeeE-EEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEE
Q 003091 58 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIAS-VKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 136 (848)
Q Consensus 58 ~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~s-vkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~ 136 (848)
...++|||+|||+.+++++|.++|++||.|.. |.|+. + .+|+++|||||+|.+.++|.+|+.. ||..|+|+.|.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~---~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~ 87 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPV---D-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIE 87 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCB---C-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEE---C-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEE
Confidence 45689999999999999999999999999987 88873 5 6889999999999999999999987 99999999999
Q ss_pred EEeccCCCC
Q 003091 137 IGWGKSVAL 145 (848)
Q Consensus 137 V~~ak~~~~ 145 (848)
|.++....+
T Consensus 88 v~~~~~~~~ 96 (104)
T 1wg5_A 88 IFKSSRAEV 96 (104)
T ss_dssp EEEECTTTS
T ss_pred EEECCHHHH
Confidence 999876543
No 127
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.52 E-value=2.8e-14 Score=132.19 Aligned_cols=80 Identities=21% Similarity=0.380 Sum_probs=73.4
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEE
Q 003091 58 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 137 (848)
Q Consensus 58 ~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V 137 (848)
+.+++|||+|||..+++++|..+|++||.|.+|.|+. .+.++|||||+|.+.++|.+|+..|||..++|+.|.|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~------~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 79 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGN------TPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVV 79 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEC------STTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEee------CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 3467999999999999999999999999999999984 2456899999999999999999999999999999999
Q ss_pred EeccCC
Q 003091 138 GWGKSV 143 (848)
Q Consensus 138 ~~ak~~ 143 (848)
.|+++.
T Consensus 80 ~~a~~~ 85 (115)
T 3lqv_A 80 LYYNAN 85 (115)
T ss_dssp EECCHH
T ss_pred EEecCC
Confidence 998753
No 128
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.52 E-value=3.4e-14 Score=128.57 Aligned_cols=76 Identities=25% Similarity=0.462 Sum_probs=71.7
Q ss_pred cEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEec
Q 003091 61 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWG 140 (848)
Q Consensus 61 t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V~~a 140 (848)
|+|||+|||+++++++|.++|++||.|.+|.|+. + ++|||||+|.+.++|.+|+..|||..++|+.|+|.|+
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~---~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 72 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIAR---N-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELS 72 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEES---S-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEES
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEee---C-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEc
Confidence 5899999999999999999999999999999984 2 6899999999999999999999999999999999999
Q ss_pred cCCC
Q 003091 141 KSVA 144 (848)
Q Consensus 141 k~~~ 144 (848)
++..
T Consensus 73 ~~~~ 76 (101)
T 2hvz_A 73 TGMP 76 (101)
T ss_dssp SSCC
T ss_pred cCCC
Confidence 8764
No 129
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.51 E-value=5.9e-14 Score=126.68 Aligned_cols=76 Identities=24% Similarity=0.390 Sum_probs=71.1
Q ss_pred CCCccEEEEecCCC-CCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEE
Q 003091 57 DPQTTNLYVGNLSP-QVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYEL 135 (848)
Q Consensus 57 d~~~t~LfVgNLp~-~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L 135 (848)
.+.+++|||+|||. ++++++|..+|++||.|.+|+|. +|||||+|.+.++|.+|+..|||..++|+.|
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-----------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 87 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-----------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKL 87 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-----------SSEEEEEESSHHHHHHHHHHHTTSEETTEEC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-----------CCEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 45688999999998 99999999999999999999884 5899999999999999999999999999999
Q ss_pred EEEeccCC
Q 003091 136 KIGWGKSV 143 (848)
Q Consensus 136 ~V~~ak~~ 143 (848)
+|.|+++.
T Consensus 88 ~V~~a~~~ 95 (97)
T 2xnq_A 88 ILEVSSSN 95 (97)
T ss_dssp EEEECCCC
T ss_pred EEEecCCC
Confidence 99999864
No 130
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=1.6e-13 Score=123.67 Aligned_cols=77 Identities=29% Similarity=0.451 Sum_probs=71.1
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHhccC--CCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeE
Q 003091 57 DPQTTNLYVGNLSPQVDENFLLRTFGRF--GPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYE 134 (848)
Q Consensus 57 d~~~t~LfVgNLp~~vte~~L~~~F~~f--G~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~ 134 (848)
....++|||+|||+.+++++|+.+|++| |.|..|+++ ++||||+|.+.++|.+|+..|||..|+|+.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-----------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-----------RDYAFVHFSNREDAVEAMKALNGKVLDGSP 80 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-----------SSEEEEEESSHHHHHHHHHHHSSEEETTEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-----------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 3457899999999999999999999999 899999876 379999999999999999999999999999
Q ss_pred EEEEeccCCC
Q 003091 135 LKIGWGKSVA 144 (848)
Q Consensus 135 L~V~~ak~~~ 144 (848)
|+|.|+++..
T Consensus 81 l~v~~a~~~~ 90 (99)
T 2cpd_A 81 IEVTLAKPVD 90 (99)
T ss_dssp EEEECCCCCC
T ss_pred EEEEECCCCC
Confidence 9999998654
No 131
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.51 E-value=3.3e-14 Score=133.09 Aligned_cols=81 Identities=12% Similarity=0.057 Sum_probs=74.3
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhccCCC---eeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeE
Q 003091 58 PQTTNLYVGNLSPQVDENFLLRTFGRFGP---IASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYE 134 (848)
Q Consensus 58 ~~~t~LfVgNLp~~vte~~L~~~F~~fG~---I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~ 134 (848)
...++|||+|||+++|+++|.++|+.||. |..|+|+. +.. |+++|||||+|.+.++|++|+. |||..|+|+.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~---~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~ 89 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIY---TRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRY 89 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEE---CSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEE---CCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeE
Confidence 45789999999999999999999999999 89999984 544 8899999999999999999998 9999999999
Q ss_pred EEEEeccCC
Q 003091 135 LKIGWGKSV 143 (848)
Q Consensus 135 L~V~~ak~~ 143 (848)
|+|.++...
T Consensus 90 i~V~~a~~~ 98 (118)
T 2db1_A 90 IEVFKSHRT 98 (118)
T ss_dssp EEEEEECHH
T ss_pred EEEEECCHH
Confidence 999998654
No 132
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=3.9e-14 Score=131.08 Aligned_cols=80 Identities=31% Similarity=0.453 Sum_probs=72.7
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhccCCCee----EEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCe
Q 003091 58 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIA----SVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEY 133 (848)
Q Consensus 58 ~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~----svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~ 133 (848)
+.+++|||+|||..+++++|.++|++||.|. .++++ +++++|||||+|.+.++|.+|+..|||..|+|+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~-------~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~ 95 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM-------TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGK 95 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE-------CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC-------CCccceEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 4578999999999999999999999999994 44444 678999999999999999999999999999999
Q ss_pred EEEEEeccCCC
Q 003091 134 ELKIGWGKSVA 144 (848)
Q Consensus 134 ~L~V~~ak~~~ 144 (848)
.|+|.||++..
T Consensus 96 ~l~v~~a~~~~ 106 (115)
T 2cpx_A 96 ILVIEFGKNKK 106 (115)
T ss_dssp BCEEEECCCCS
T ss_pred EEEEEEccCCC
Confidence 99999998764
No 133
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=1.6e-14 Score=136.02 Aligned_cols=82 Identities=15% Similarity=0.140 Sum_probs=74.3
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEE
Q 003091 58 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 137 (848)
Q Consensus 58 ~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V 137 (848)
...++|||+|||+++|+++|..+|+.||.|..+.++ .+..+|+++|||||+|.+.++|.+||. |||..|+|+.|.|
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~---~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 98 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYI---AYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQV 98 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEE---EECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEE---EECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEE
Confidence 456899999999999999999999999999886555 256689999999999999999999999 9999999999999
Q ss_pred EeccCC
Q 003091 138 GWGKSV 143 (848)
Q Consensus 138 ~~ak~~ 143 (848)
.||...
T Consensus 99 ~~a~~~ 104 (124)
T 1wel_A 99 HPITKK 104 (124)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 998754
No 134
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.50 E-value=1.6e-14 Score=131.03 Aligned_cols=82 Identities=24% Similarity=0.404 Sum_probs=75.4
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEE
Q 003091 57 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 136 (848)
Q Consensus 57 d~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~ 136 (848)
....++|||+|||..+++++|..+|++||.|.+|+|+. +. +|+++|||||+|.+.++|.+|+. +|..++|+.|.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~---~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~ 79 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIIT---DR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLK 79 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEE---CT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEE---CC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEE
Confidence 34578999999999999999999999999999999994 55 88999999999999999999998 99999999999
Q ss_pred EEeccCCC
Q 003091 137 IGWGKSVA 144 (848)
Q Consensus 137 V~~ak~~~ 144 (848)
|+++.+..
T Consensus 80 v~~a~~~~ 87 (102)
T 2xs2_A 80 LGPAIRKQ 87 (102)
T ss_dssp EEEEEECC
T ss_pred EEECCcCc
Confidence 99998654
No 135
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.50 E-value=1.6e-14 Score=125.58 Aligned_cols=73 Identities=18% Similarity=0.287 Sum_probs=67.3
Q ss_pred ccEEEEecCCCCC------CHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCe
Q 003091 60 TTNLYVGNLSPQV------DENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEY 133 (848)
Q Consensus 60 ~t~LfVgNLp~~v------te~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~ 133 (848)
+++|||+|||..+ ++++|..+|++||.|.+|.|+ ..+|+++|||||+|.+.++|.+|+..|||..|+|+
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~-----~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 75 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-----EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 75 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC-----CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSS
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec-----CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCc
Confidence 3689999999999 789999999999999999876 24788999999999999999999999999999999
Q ss_pred -EEEE
Q 003091 134 -ELKI 137 (848)
Q Consensus 134 -~L~V 137 (848)
.|+|
T Consensus 76 ~~l~V 80 (81)
T 2krb_A 76 HTFRV 80 (81)
T ss_dssp SCCCC
T ss_pred eeEEe
Confidence 8876
No 136
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.50 E-value=1.2e-14 Score=131.57 Aligned_cols=82 Identities=22% Similarity=0.327 Sum_probs=74.4
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEE
Q 003091 58 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 137 (848)
Q Consensus 58 ~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V 137 (848)
...++|||+|||+++++++|..+|++||.|.. .++ .+..+++++|||||+|.+.++|.+|+. |||..|.|+.|+|
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~---~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V 89 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAV---VDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKL 89 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCC---CEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEE---ecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEE
Confidence 34679999999999999999999999999988 555 366788999999999999999999998 9999999999999
Q ss_pred EeccCCC
Q 003091 138 GWGKSVA 144 (848)
Q Consensus 138 ~~ak~~~ 144 (848)
.||++..
T Consensus 90 ~~a~~~~ 96 (101)
T 1fj7_A 90 EKPKGRD 96 (101)
T ss_dssp ECCSCCC
T ss_pred EEcCCCC
Confidence 9998653
No 137
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.49 E-value=4.5e-14 Score=126.85 Aligned_cols=77 Identities=26% Similarity=0.409 Sum_probs=71.5
Q ss_pred CCccEEEEecCCC-CCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEE
Q 003091 58 PQTTNLYVGNLSP-QVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 136 (848)
Q Consensus 58 ~~~t~LfVgNLp~-~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~ 136 (848)
+.+++|||+|||+ .+++++|..+|++||.|.+|.|. +|||||+|.+.++|..|+..|||..+.|+.|+
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-----------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 76 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-----------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLI 76 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-----------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-----------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 4678999999998 99999999999999999999885 48999999999999999999999999999999
Q ss_pred EEeccCCCC
Q 003091 137 IGWGKSVAL 145 (848)
Q Consensus 137 V~~ak~~~~ 145 (848)
|.|+++...
T Consensus 77 V~~a~~~~~ 85 (96)
T 2kvi_A 77 LEVSSSNAR 85 (96)
T ss_dssp EEEEECCCC
T ss_pred EEEcCcCCC
Confidence 999987654
No 138
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.49 E-value=2.6e-14 Score=149.26 Aligned_cols=82 Identities=15% Similarity=0.172 Sum_probs=76.3
Q ss_pred CccEEEEecCCCCCCHHHHHHHhccCC--CeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEE
Q 003091 59 QTTNLYVGNLSPQVDENFLLRTFGRFG--PIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 136 (848)
Q Consensus 59 ~~t~LfVgNLp~~vte~~L~~~F~~fG--~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~ 136 (848)
..++|||+||++++|+++|+++|++|| .|.+|+|+ .+..+++++|||||+|.+.++|.+||..|||..|+|+.|+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~---~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~ 143 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFF---ENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPV 143 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEE---ECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEE---ecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeE
Confidence 577999999999999999999999999 99999999 4778999999999999999999999999999999999999
Q ss_pred EEeccCC
Q 003091 137 IGWGKSV 143 (848)
Q Consensus 137 V~~ak~~ 143 (848)
|.||++.
T Consensus 144 V~~a~~~ 150 (229)
T 3q2s_C 144 VTPVNKQ 150 (229)
T ss_dssp EEECCHH
T ss_pred EEECCCC
Confidence 9998653
No 139
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.49 E-value=2.1e-13 Score=125.42 Aligned_cols=76 Identities=21% Similarity=0.388 Sum_probs=70.6
Q ss_pred CCCccEEEEecCCCC-CCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEE
Q 003091 57 DPQTTNLYVGNLSPQ-VDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYEL 135 (848)
Q Consensus 57 d~~~t~LfVgNLp~~-vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L 135 (848)
...+++|||+|||+. +++++|+.+|++||.|..|.| +++||||+|.+.++|.+|+..|||..|+|+.|
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-----------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 92 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-----------HKGYAFVQYSNERHARAAVLGENGRVLAGQTL 92 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-----------ETTEEEEECSSSHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-----------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 445689999999999 999999999999999999988 35899999999999999999999999999999
Q ss_pred EEEeccCC
Q 003091 136 KIGWGKSV 143 (848)
Q Consensus 136 ~V~~ak~~ 143 (848)
+|.|++..
T Consensus 93 ~V~~a~~~ 100 (110)
T 1wf1_A 93 DINMAGEP 100 (110)
T ss_dssp CEEESCCC
T ss_pred EEEECCCC
Confidence 99999754
No 140
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=1e-13 Score=126.48 Aligned_cols=80 Identities=16% Similarity=0.126 Sum_probs=72.2
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEE
Q 003091 58 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 137 (848)
Q Consensus 58 ~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V 137 (848)
...++|||+|||+++|+++|+++|++||. .+|+|+. +. +++++|||||+|.+.++|++|| .+|+..|+|+.|+|
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~---d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V 86 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEI---GP-DGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVEL 86 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEE---SS-SSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEE---CC-CCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEE
Confidence 45679999999999999999999999995 4999984 55 7899999999999999999999 58999999999999
Q ss_pred EeccCC
Q 003091 138 GWGKSV 143 (848)
Q Consensus 138 ~~ak~~ 143 (848)
.++...
T Consensus 87 ~~~~~~ 92 (102)
T 1wez_A 87 FLNSTA 92 (102)
T ss_dssp EEECCC
T ss_pred EECCCC
Confidence 987644
No 141
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.48 E-value=1.2e-13 Score=121.93 Aligned_cols=78 Identities=15% Similarity=0.207 Sum_probs=71.7
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEE
Q 003091 58 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 137 (848)
Q Consensus 58 ~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V 137 (848)
...++|||+|||+.+++++|+++|++| .|.+|+|. +++|||||+|.+.++|.+|+..|||..++|+.|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~---------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 72 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD---------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIV 72 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE---------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe---------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEE
Confidence 356899999999999999999999999 99999885 47899999999999999999999999999999999
Q ss_pred EeccCCCC
Q 003091 138 GWGKSVAL 145 (848)
Q Consensus 138 ~~ak~~~~ 145 (848)
.||....+
T Consensus 73 ~~a~~~~~ 80 (88)
T 1wg1_A 73 QLQPTDAL 80 (88)
T ss_dssp EECCCCCC
T ss_pred EEcCCCce
Confidence 99876543
No 142
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=5e-14 Score=131.18 Aligned_cols=79 Identities=20% Similarity=0.281 Sum_probs=71.3
Q ss_pred CCccEEEE--ecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCcee-----
Q 003091 58 PQTTNLYV--GNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVV----- 130 (848)
Q Consensus 58 ~~~t~LfV--gNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i----- 130 (848)
.++++||| |||+.++++++|+++|++||.|.+|.|+. .+|||||+|.+.++|++|+..|||..|
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~---------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg 93 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP---------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLG 93 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT---------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTS
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC---------CCCEEEEEECCHHHHHHHHHHhCCCEEccccC
Confidence 34678999 77999999999999999999999998762 479999999999999999999999998
Q ss_pred cCeEEEEEeccCCCC
Q 003091 131 YEYELKIGWGKSVAL 145 (848)
Q Consensus 131 ~G~~L~V~~ak~~~~ 145 (848)
.|++|+|.|++..+.
T Consensus 94 ~g~~l~v~~a~~~p~ 108 (114)
T 2cq2_A 94 QKITLYLNFVEKVQW 108 (114)
T ss_dssp CEEECEEEEESCCCC
T ss_pred CCcEEEEEecccCcc
Confidence 789999999987653
No 143
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.48 E-value=1.5e-13 Score=156.55 Aligned_cols=84 Identities=17% Similarity=0.358 Sum_probs=78.8
Q ss_pred CccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEEE
Q 003091 59 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 138 (848)
Q Consensus 59 ~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V~ 138 (848)
..++|||+|||+.||+++|..+|++||.|..|+|+. +..+++++|||||+|.+.++|.+||..|||..|+|+.|.|.
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~---d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~ 177 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVY---SKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 177 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeec---cCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEE
Confidence 468999999999999999999999999999999994 77789999999999999999999999999999999999999
Q ss_pred eccCCCC
Q 003091 139 WGKSVAL 145 (848)
Q Consensus 139 ~ak~~~~ 145 (848)
||++...
T Consensus 178 ~a~~~~~ 184 (437)
T 3pgw_S 178 VERGRTV 184 (437)
T ss_pred EeCCCCC
Confidence 9986644
No 144
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.48 E-value=5.5e-14 Score=141.11 Aligned_cols=85 Identities=22% Similarity=0.250 Sum_probs=78.3
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEE
Q 003091 57 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 136 (848)
Q Consensus 57 d~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~ 136 (848)
...+++|||+|||+.+++++|.++|++||.|.+|.|+. +. ++.++|||||+|.+.++|.+|+..|||..|+|+.|+
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~---d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~ 160 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDY---DR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMD 160 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECC---CT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---CC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEE
Confidence 35578999999999999999999999999999999984 55 788999999999999999999999999999999999
Q ss_pred EEeccCCCC
Q 003091 137 IGWGKSVAL 145 (848)
Q Consensus 137 V~~ak~~~~ 145 (848)
|.||.....
T Consensus 161 V~~a~~~~~ 169 (177)
T 2f3j_A 161 IQLVASQID 169 (177)
T ss_dssp EEEESSGGG
T ss_pred EEEecCCCC
Confidence 999986543
No 145
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=1.3e-13 Score=123.16 Aligned_cols=77 Identities=19% Similarity=0.265 Sum_probs=68.5
Q ss_pred CccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEEE
Q 003091 59 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 138 (848)
Q Consensus 59 ~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V~ 138 (848)
..++|||+|||.++++++|..+|++||.|.+| ++ +..+++ ||||+|.+.++|.+|+. |||..|+|+.|.|.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v-~~----~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~ 77 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV-VM----DKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVR 77 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE-EE----CSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCB
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE-EE----cCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEE
Confidence 45799999999999999999999999999998 44 444444 99999999999999999 99999999999999
Q ss_pred eccCCC
Q 003091 139 WGKSVA 144 (848)
Q Consensus 139 ~ak~~~ 144 (848)
++.+..
T Consensus 78 ~a~~~~ 83 (94)
T 2e5g_A 78 PREQKE 83 (94)
T ss_dssp CSCCSC
T ss_pred ECCcCC
Confidence 887554
No 146
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.48 E-value=8.8e-14 Score=124.53 Aligned_cols=80 Identities=19% Similarity=0.233 Sum_probs=72.2
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEE
Q 003091 57 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 136 (848)
Q Consensus 57 d~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~ 136 (848)
....++|||+|||..+++++|..+|++||.|..+ . .++.++|||||+|.+.++|..|+..|||..|+|+.|+
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~--~------~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 84 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV--S------QDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVS 84 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE--E------ETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe--C------CCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 3467899999999999999999999999988766 1 3677899999999999999999999999999999999
Q ss_pred EEeccCCC
Q 003091 137 IGWGKSVA 144 (848)
Q Consensus 137 V~~ak~~~ 144 (848)
|.|+++..
T Consensus 85 v~~a~~~~ 92 (96)
T 1fjc_A 85 LYYTGEKG 92 (96)
T ss_dssp EEECSSSC
T ss_pred EEEcCCCC
Confidence 99998653
No 147
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.48 E-value=9.3e-14 Score=142.81 Aligned_cols=81 Identities=32% Similarity=0.548 Sum_probs=76.1
Q ss_pred CccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEEE
Q 003091 59 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 138 (848)
Q Consensus 59 ~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V~ 138 (848)
+.++|||||||+++|+++|.++|++||.|.+|+|+ .+..+++++|||||+|.+.++|.+|+..|||..+.|+.|+|.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~---~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~ 90 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVC---RDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIM 90 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEE---ECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEe---cccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccc
Confidence 46799999999999999999999999999999999 477889999999999999999999999999999999999999
Q ss_pred eccC
Q 003091 139 WGKS 142 (848)
Q Consensus 139 ~ak~ 142 (848)
|+..
T Consensus 91 ~~~~ 94 (213)
T 4f02_A 91 WSQR 94 (213)
T ss_dssp ECCC
T ss_pred cccc
Confidence 9764
No 148
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.47 E-value=1.2e-13 Score=140.77 Aligned_cols=85 Identities=16% Similarity=0.316 Sum_probs=78.8
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEE
Q 003091 58 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 137 (848)
Q Consensus 58 ~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V 137 (848)
...++|||+|||..+++++|.++|++||.|..|+|+. +..+|+++|||||+|.+.++|.+|+..|||..|+|+.|.|
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~---~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V 199 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLAR---DPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRV 199 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEE---CTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEE
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEe---cCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEE
Confidence 3457999999999999999999999999999999994 6678899999999999999999999999999999999999
Q ss_pred EeccCCCC
Q 003091 138 GWGKSVAL 145 (848)
Q Consensus 138 ~~ak~~~~ 145 (848)
.|+++.+.
T Consensus 200 ~~a~~~~~ 207 (216)
T 2qfj_A 200 GKAVTPPM 207 (216)
T ss_dssp EECSSCSS
T ss_pred EEecCCCC
Confidence 99987644
No 149
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.47 E-value=6.5e-14 Score=134.65 Aligned_cols=81 Identities=12% Similarity=0.039 Sum_probs=74.5
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHhccCCC---eeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCe
Q 003091 57 DPQTTNLYVGNLSPQVDENFLLRTFGRFGP---IASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEY 133 (848)
Q Consensus 57 d~~~t~LfVgNLp~~vte~~L~~~F~~fG~---I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~ 133 (848)
....++|||+|||+++|+++|.++|++||. |.+|+|+. +.. |+++|||||+|.+.++|++|+. |||..|+|+
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~---d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr 115 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIY---TRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHR 115 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEE---CSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEE---CCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCE
Confidence 345789999999999999999999999999 89999994 555 8999999999999999999999 999999999
Q ss_pred EEEEEeccC
Q 003091 134 ELKIGWGKS 142 (848)
Q Consensus 134 ~L~V~~ak~ 142 (848)
.|+|.++.+
T Consensus 116 ~i~V~~a~~ 124 (136)
T 2hgl_A 116 YIEVFKSHR 124 (136)
T ss_dssp EEEEEECCH
T ss_pred EEEEEECCh
Confidence 999999764
No 150
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.47 E-value=1.1e-13 Score=134.47 Aligned_cols=79 Identities=27% Similarity=0.462 Sum_probs=73.5
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEE
Q 003091 57 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 136 (848)
Q Consensus 57 d~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~ 136 (848)
....++|||+|||+++++++|..+|++||.|.+|+|+. + ++|||||+|.+.++|..|+..|||..|+|+.|+
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~---~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 141 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVAR---N-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVR 141 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECS---S-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEee---C-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 45678999999999999999999999999999999984 2 589999999999999999999999999999999
Q ss_pred EEeccCC
Q 003091 137 IGWGKSV 143 (848)
Q Consensus 137 V~~ak~~ 143 (848)
|.|+++.
T Consensus 142 v~~a~~~ 148 (150)
T 2i2y_A 142 VELSNGE 148 (150)
T ss_dssp EEECCCC
T ss_pred EEEcCCC
Confidence 9999864
No 151
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.47 E-value=7.9e-14 Score=134.40 Aligned_cols=86 Identities=24% Similarity=0.397 Sum_probs=73.0
Q ss_pred CccEEEEecCCCCCCHHHHHHHhccCCCeeEE--EEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEE
Q 003091 59 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASV--KIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 136 (848)
Q Consensus 59 ~~t~LfVgNLp~~vte~~L~~~F~~fG~I~sv--kI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~ 136 (848)
.+++|||+|||+.+|+++|..+|++||.|..| +++.......+|+++|||||+|.+.++|.+|+..|||..|+|+.|+
T Consensus 44 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~ 123 (143)
T 3egn_A 44 PNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMV 123 (143)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEE
Confidence 46899999999999999999999999998875 1111000124788999999999999999999999999999999999
Q ss_pred EEeccCCC
Q 003091 137 IGWGKSVA 144 (848)
Q Consensus 137 V~~ak~~~ 144 (848)
|.||++..
T Consensus 124 V~~a~~~~ 131 (143)
T 3egn_A 124 VQFARSAR 131 (143)
T ss_dssp EEECCCSC
T ss_pred EEECCCCC
Confidence 99998653
No 152
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.20 E-value=4e-15 Score=138.37 Aligned_cols=85 Identities=18% Similarity=0.290 Sum_probs=78.1
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHhccCCCeeE--------EEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCc
Q 003091 57 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIAS--------VKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGV 128 (848)
Q Consensus 57 d~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~s--------vkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~ 128 (848)
.+..++|||+|||..+++++|.++|++||.|.. |+|+. +..+++++|||||+|.+.++|.+|+..|||.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~---~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 80 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYT---DRETGKLKGEATVSFDDPPSAKAAIDWFDGK 80 (116)
Confidence 356789999999999999999999999999998 88884 6678899999999999999999999999999
Q ss_pred eecCeEEEEEeccCCC
Q 003091 129 VVYEYELKIGWGKSVA 144 (848)
Q Consensus 129 ~i~G~~L~V~~ak~~~ 144 (848)
.|.|+.|+|.||++..
T Consensus 81 ~~~g~~l~V~~a~~~~ 96 (116)
T 2lcw_A 81 EFSGNPIKVSFATRRA 96 (116)
Confidence 9999999999988653
No 153
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.47 E-value=3.2e-14 Score=130.56 Aligned_cols=81 Identities=9% Similarity=0.042 Sum_probs=74.3
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhccCCC---eeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeE
Q 003091 58 PQTTNLYVGNLSPQVDENFLLRTFGRFGP---IASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYE 134 (848)
Q Consensus 58 ~~~t~LfVgNLp~~vte~~L~~~F~~fG~---I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~ 134 (848)
...++|||+|||+++|+++|.++|+.||. |.+|+|+. +.. |+++|||||+|.+.++|.+|+. |||..|+|+.
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~---~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~ 83 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLL---NRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRY 83 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCC---CTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEE---CCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeE
Confidence 45789999999999999999999999998 89999984 555 8999999999999999999999 9999999999
Q ss_pred EEEEeccCC
Q 003091 135 LKIGWGKSV 143 (848)
Q Consensus 135 L~V~~ak~~ 143 (848)
|+|.++.+.
T Consensus 84 i~V~~a~~~ 92 (107)
T 2lmi_A 84 VEVYEINNE 92 (107)
T ss_dssp CCCEECCHH
T ss_pred EEEEECCHH
Confidence 999998754
No 154
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=1.3e-13 Score=123.33 Aligned_cols=79 Identities=16% Similarity=0.316 Sum_probs=70.4
Q ss_pred CccEEEEecCCCCCCHHHHHHHhccCCCeeEEE-EeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEE
Q 003091 59 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVK-IMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 137 (848)
Q Consensus 59 ~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svk-I~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V 137 (848)
..++|||+|||+.+++++|..+|++||.|.+|+ |+. +..+ +.|||+|.+.++|..|+..|||..|+|+.|+|
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~---~~~~----~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 86 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNT---DSET----AVVNVTYSSKDQARQALDKLNGFQLENFTLKV 86 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECC---SSSS----EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeec---CCCC----CEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 467999999999999999999999999999995 763 3332 33999999999999999999999999999999
Q ss_pred EeccCCC
Q 003091 138 GWGKSVA 144 (848)
Q Consensus 138 ~~ak~~~ 144 (848)
.||++..
T Consensus 87 ~~a~~~~ 93 (96)
T 2e44_A 87 AYIPDEM 93 (96)
T ss_dssp EECCCCC
T ss_pred EEcCccc
Confidence 9998763
No 155
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.46 E-value=2.5e-14 Score=122.01 Aligned_cols=75 Identities=21% Similarity=0.372 Sum_probs=70.0
Q ss_pred EEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEec
Q 003091 62 NLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWG 140 (848)
Q Consensus 62 ~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V~~a 140 (848)
+|||+|||+++++++|.++|++||.|.+|.|+ .+..++.++|||||+|.+.++|.+|+. ++|..++|+.|.|.||
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~---~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELP---MDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCC---CSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE---ecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 58999999999999999999999999999988 466788999999999999999999997 5899999999999886
No 156
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.46 E-value=2.9e-13 Score=131.57 Aligned_cols=83 Identities=35% Similarity=0.605 Sum_probs=77.4
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEE
Q 003091 57 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 136 (848)
Q Consensus 57 d~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~ 136 (848)
...+++|||+|||..+++++|.++|++||.|.+|.|+. +..+|.++|||||.|.+.++|.+|+..|||..++|+.|+
T Consensus 84 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~---~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 160 (166)
T 3md3_A 84 SDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMW---DMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLR 160 (166)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEE---CTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEe---cCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEE
Confidence 34578999999999999999999999999999999994 667889999999999999999999999999999999999
Q ss_pred EEeccC
Q 003091 137 IGWGKS 142 (848)
Q Consensus 137 V~~ak~ 142 (848)
|.||+.
T Consensus 161 v~~a~~ 166 (166)
T 3md3_A 161 INWAAK 166 (166)
T ss_dssp EEESCC
T ss_pred EEecCC
Confidence 999873
No 157
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.45 E-value=2.8e-13 Score=128.98 Aligned_cols=78 Identities=22% Similarity=0.397 Sum_probs=70.8
Q ss_pred ccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccE-EEEEeCCHHHHHHHHHHcCCceecC--eEEE
Q 003091 60 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNC-GFVAFMNRADGQAAKDEMQGVVVYE--YELK 136 (848)
Q Consensus 60 ~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~-gFV~F~~~~~A~~Ai~~lnG~~i~G--~~L~ 136 (848)
-..|||+||++.+|+++|.++|++||.|.+|.|+. +.+|| |||+|.+.++|..|+..|||..|.| +.|+
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~--------~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~Lr 99 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFT--------KNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLR 99 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEE--------ETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEE
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEc--------CCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEE
Confidence 45789999999999999999999999999998872 23577 9999999999999999999999988 9999
Q ss_pred EEeccCCCC
Q 003091 137 IGWGKSVAL 145 (848)
Q Consensus 137 V~~ak~~~~ 145 (848)
|.||++..+
T Consensus 100 I~~ak~~~l 108 (130)
T 3zzy_A 100 IDFSKLTSL 108 (130)
T ss_dssp EEECSCSSC
T ss_pred EEecCCCce
Confidence 999997654
No 158
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.44 E-value=3.1e-13 Score=120.06 Aligned_cols=75 Identities=19% Similarity=0.293 Sum_probs=62.8
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCce--ecCeE
Q 003091 57 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVV--VYEYE 134 (848)
Q Consensus 57 d~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~--i~G~~ 134 (848)
.+..++|||||||+++|+++|+++|++||.|.+|+|+. .++|||||+|.+.++|.+ |+|.. +.|+.
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~--------~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~ 75 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPK--------PFRAFAFVTFADDKVAQS----LCGEDLIIKGIS 75 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCS--------SCCSEEEEEESCHHHHHH----HTTCEEEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEee--------CCCCEEEEEECCHHHHHH----HcCCCcccCCEE
Confidence 45678999999999999999999999999999999984 278999999999999883 55655 46999
Q ss_pred EEEEeccCC
Q 003091 135 LKIGWGKSV 143 (848)
Q Consensus 135 L~V~~ak~~ 143 (848)
|.|.+|++.
T Consensus 76 v~v~~a~~k 84 (89)
T 3d2w_A 76 VHISNAEPK 84 (89)
T ss_dssp EEEEECC--
T ss_pred EEEEEcCCC
Confidence 999998764
No 159
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=2.9e-13 Score=125.17 Aligned_cols=78 Identities=14% Similarity=0.185 Sum_probs=71.4
Q ss_pred CccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEEE
Q 003091 59 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 138 (848)
Q Consensus 59 ~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V~ 138 (848)
..++|||+|||+++++++|+++|+.| .|.+|.|+. +.. |+++|||||+|.+.++|++|+ .|||..|+|+.|.|.
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~---d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~ 88 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLK---DHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVS 88 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECC---CTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEE---CCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEE
Confidence 45799999999999999999999999 899999994 544 889999999999999999999 799999999999998
Q ss_pred eccC
Q 003091 139 WGKS 142 (848)
Q Consensus 139 ~ak~ 142 (848)
.+..
T Consensus 89 ~a~~ 92 (109)
T 2dnn_A 89 PATE 92 (109)
T ss_dssp ECCH
T ss_pred ECCc
Confidence 8753
No 160
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.43 E-value=3.7e-13 Score=131.00 Aligned_cols=80 Identities=23% Similarity=0.446 Sum_probs=75.6
Q ss_pred ccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEe
Q 003091 60 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 139 (848)
Q Consensus 60 ~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V~~ 139 (848)
.++|||+|||+++++++|.++|+.||.|.+|+|+. +..+|+++|||||.|.+.++|.+|+..|||..++|+.|+|.|
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~---~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 78 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVR---DKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY 78 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEE---CTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEe---CCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEe
Confidence 57999999999999999999999999999999994 666889999999999999999999999999999999999999
Q ss_pred ccC
Q 003091 140 GKS 142 (848)
Q Consensus 140 ak~ 142 (848)
+.+
T Consensus 79 ~~~ 81 (167)
T 1fxl_A 79 ARP 81 (167)
T ss_dssp CCC
T ss_pred cCC
Confidence 864
No 161
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.43 E-value=2.5e-13 Score=134.04 Aligned_cols=79 Identities=22% Similarity=0.376 Sum_probs=71.5
Q ss_pred ccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecC--eEEEE
Q 003091 60 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYE--YELKI 137 (848)
Q Consensus 60 ~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G--~~L~V 137 (848)
..+|||+||++.+|+++|+++|++||.|.+|.|+. ..++|||||+|.+.++|+.|+..|||..|.| +.|+|
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~-------k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V 118 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFT-------KNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 118 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEE-------SSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEE
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEe-------CCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEE
Confidence 46799999999999999999999999999999872 2357899999999999999999999999965 99999
Q ss_pred EeccCCCC
Q 003091 138 GWGKSVAL 145 (848)
Q Consensus 138 ~~ak~~~~ 145 (848)
.||++..+
T Consensus 119 ~~Ak~~~l 126 (164)
T 1sjr_A 119 DFSKLTSL 126 (164)
T ss_dssp EECSSSSC
T ss_pred EEecCCcc
Confidence 99997654
No 162
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.43 E-value=6.4e-13 Score=125.67 Aligned_cols=76 Identities=22% Similarity=0.312 Sum_probs=68.5
Q ss_pred cEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccE-EEEEeCCHHHHHHHHHHcCCceecC--eEEEE
Q 003091 61 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNC-GFVAFMNRADGQAAKDEMQGVVVYE--YELKI 137 (848)
Q Consensus 61 t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~-gFV~F~~~~~A~~Ai~~lnG~~i~G--~~L~V 137 (848)
..|||+||++.+++++|..+|++||.|.+|+|+. + .|| |||+|.+.++|..|+..|||..|.| +.|+|
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~--------~-~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V 96 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK--------R-NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKI 96 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE--------S-SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEE
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe--------C-CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEE
Confidence 3578999999999999999999999999999972 1 276 9999999999999999999999987 69999
Q ss_pred EeccCCCC
Q 003091 138 GWGKSVAL 145 (848)
Q Consensus 138 ~~ak~~~~ 145 (848)
.||++..+
T Consensus 97 ~~Ak~~~l 104 (124)
T 2e5i_A 97 EYARPTRL 104 (124)
T ss_dssp ECCSCSCC
T ss_pred EEecCCcc
Confidence 99997754
No 163
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.42 E-value=4.1e-13 Score=137.79 Aligned_cols=80 Identities=15% Similarity=0.253 Sum_probs=73.6
Q ss_pred CCccEEEEecCC-CCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEE
Q 003091 58 PQTTNLYVGNLS-PQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 136 (848)
Q Consensus 58 ~~~t~LfVgNLp-~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~ 136 (848)
+.+++|||+||| ..+++++|..+|++||.|.+|+|+. ..+|||||+|.+.++|..||..|||..|.|+.|+
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~--------~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~ 73 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMK--------SKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMN 73 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECT--------TSTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEec--------CCCCEEEEEECCHHHHHHHHHHhCCCEECCceEE
Confidence 357899999999 7999999999999999999999984 2479999999999999999999999999999999
Q ss_pred EEeccCCCC
Q 003091 137 IGWGKSVAL 145 (848)
Q Consensus 137 V~~ak~~~~ 145 (848)
|.|++...+
T Consensus 74 v~~s~~~~~ 82 (205)
T 3tyt_A 74 VCVSKQPAI 82 (205)
T ss_dssp EEECSCSCC
T ss_pred EEEccCCcc
Confidence 999986654
No 164
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.42 E-value=3.4e-13 Score=131.75 Aligned_cols=82 Identities=27% Similarity=0.428 Sum_probs=76.4
Q ss_pred CccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEEE
Q 003091 59 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 138 (848)
Q Consensus 59 ~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V~ 138 (848)
++++|||+|||+++++++|..+|++||.|.+|+|+. +..+|+++|||||.|.+.++|..|+..|+|..++|+.|.|.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 78 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMR---DYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVS 78 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCE---ETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEE---eCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEE
Confidence 368999999999999999999999999999999984 66788899999999999999999999999999999999999
Q ss_pred eccCC
Q 003091 139 WGKSV 143 (848)
Q Consensus 139 ~ak~~ 143 (848)
|+++.
T Consensus 79 ~~~~~ 83 (168)
T 1b7f_A 79 YARPG 83 (168)
T ss_dssp ECCCC
T ss_pred ecCCC
Confidence 98743
No 165
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=3.6e-13 Score=120.24 Aligned_cols=74 Identities=22% Similarity=0.289 Sum_probs=66.1
Q ss_pred CCccEEEEecCCCCCCHHH----HHHHhccC-CCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecC
Q 003091 58 PQTTNLYVGNLSPQVDENF----LLRTFGRF-GPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYE 132 (848)
Q Consensus 58 ~~~t~LfVgNLp~~vte~~----L~~~F~~f-G~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G 132 (848)
|..|.|||+|||..+++++ |.++|++| |.|.+| ++ |+|||.|.+.++|.+|++.|||..+.|
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V----------tg---G~AfV~F~~~esA~~A~~~l~G~~l~g 73 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI----------TG---CSAILRFINQDSAERAQKRMENEDVFG 73 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC----------CT---TCEEEEESSHHHHHHHHHHHTTCCSSS
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE----------ec---CEEEEEECCHHHHHHHHHHhcCCccCC
Confidence 3455699999999999987 66899999 499987 22 999999999999999999999999999
Q ss_pred eEEEEEeccCCC
Q 003091 133 YELKIGWGKSVA 144 (848)
Q Consensus 133 ~~L~V~~ak~~~ 144 (848)
++|+|.||+..+
T Consensus 74 r~i~v~~A~~~s 85 (96)
T 2diu_A 74 NRIIVSFTPKNR 85 (96)
T ss_dssp SCCEEESSCCSC
T ss_pred ceEEEEecCCCc
Confidence 999999998765
No 166
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.41 E-value=4.5e-13 Score=126.10 Aligned_cols=76 Identities=25% Similarity=0.435 Sum_probs=70.5
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEE
Q 003091 58 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 137 (848)
Q Consensus 58 ~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V 137 (848)
..+++|||+|| ++++++|..+|++||.|.+|.|+ .++|||||+|.+.++|.+|+..|||..|+|+.|+|
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~---------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V 105 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD---------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKV 105 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE---------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe---------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 45789999996 69999999999999999999987 47899999999999999999999999999999999
Q ss_pred EeccCCC
Q 003091 138 GWGKSVA 144 (848)
Q Consensus 138 ~~ak~~~ 144 (848)
.||++..
T Consensus 106 ~~a~~~~ 112 (121)
T 2bz2_A 106 NIARKQP 112 (121)
T ss_dssp EECCSSC
T ss_pred EEeCCCC
Confidence 9998664
No 167
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.40 E-value=2.6e-13 Score=142.16 Aligned_cols=81 Identities=27% Similarity=0.498 Sum_probs=71.8
Q ss_pred CCCccEEEEecCCCCC---------CHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCC
Q 003091 57 DPQTTNLYVGNLSPQV---------DENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQG 127 (848)
Q Consensus 57 d~~~t~LfVgNLp~~v---------te~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG 127 (848)
+..+++||||||+..+ ++++|..+|++||.|.+|+|+. ++|||||+|.+.++|+.|+..|+|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~---------~kG~AFV~F~~~~~Ae~A~~am~g 201 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE---------SKNCGFVKFKYQANAEFAKEAMSN 201 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG---------GGTEEEEEESSHHHHHHHHHHHTT
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC---------CCCEEEEEeCCHHHHHHHHHHhCC
Confidence 4568899999999998 7999999999999999999993 689999999999999999999999
Q ss_pred cee------------cCeEEEEEeccCCCCC
Q 003091 128 VVV------------YEYELKIGWGKSVALP 146 (848)
Q Consensus 128 ~~i------------~G~~L~V~~ak~~~~p 146 (848)
..| .|+.|.|.||+..+.|
T Consensus 202 ~~l~~~~~~e~~~~~~gr~L~V~wA~~~pnp 232 (240)
T 3u1l_A 202 QTLLLPSDKEWDDRREGTGLLVKWANEDPDP 232 (240)
T ss_dssp CCCCCTTSTTGGGGGGSCCCEEEECC-----
T ss_pred CEEeccccccccccCCCCEEEEEEccCCCCH
Confidence 999 8999999999976543
No 168
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.39 E-value=4.4e-13 Score=126.24 Aligned_cols=78 Identities=12% Similarity=0.248 Sum_probs=70.6
Q ss_pred cEEEEecC----CCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCC----HHH----HHHHHH--HcC
Q 003091 61 TNLYVGNL----SPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMN----RAD----GQAAKD--EMQ 126 (848)
Q Consensus 61 t~LfVgNL----p~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~----~~~----A~~Ai~--~ln 126 (848)
++|||||| |+.+++..|+.+|+.||.|.+|+++ +|+.||+++|||||.|.+ +.+ |.+|+. .||
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li---~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~ln 79 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAF---NDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESS 79 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEE---ECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTT
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEE---ecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhc
Confidence 68999999 9999999999999999999999999 699999999999999995 322 788888 789
Q ss_pred CceecCeEEEEEecc
Q 003091 127 GVVVYEYELKIGWGK 141 (848)
Q Consensus 127 G~~i~G~~L~V~~ak 141 (848)
|..|+|+.|+|.+-+
T Consensus 80 g~~I~Gr~irV~ln~ 94 (136)
T 2j8a_A 80 GCFIMGFKFEVILNK 94 (136)
T ss_dssp CEEETTEEEEEEECC
T ss_pred CCeecCcEEEEEECc
Confidence 999999999998744
No 169
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.39 E-value=5.8e-13 Score=123.94 Aligned_cols=74 Identities=15% Similarity=0.219 Sum_probs=65.9
Q ss_pred CccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeE----
Q 003091 59 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYE---- 134 (848)
Q Consensus 59 ~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~---- 134 (848)
..++|||+|||+++++++|.++|++||.|..|.|+. + |||||+|.+.++|++||..|||..|+|+.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~---~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~ 84 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYR---D-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETA 84 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECT---T-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEec---C-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeE
Confidence 467999999999999999999999999999999983 2 99999999999999999999999999998
Q ss_pred -EEEEeccC
Q 003091 135 -LKIGWGKS 142 (848)
Q Consensus 135 -L~V~~ak~ 142 (848)
|+|..+.+
T Consensus 85 ~i~v~~~~~ 93 (115)
T 3beg_B 85 YIRVKVDGP 93 (115)
T ss_dssp BCEEEECC-
T ss_pred EEEeccCCC
Confidence 66666554
No 170
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.39 E-value=8.7e-13 Score=129.50 Aligned_cols=79 Identities=13% Similarity=0.331 Sum_probs=74.9
Q ss_pred CccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEEE
Q 003091 59 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 138 (848)
Q Consensus 59 ~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V~ 138 (848)
..++|||+|||..+++++|.++|++||.|.+|.|+. +..+|.++|||||.|.+.++|.+|+..|||..++|+.|.|.
T Consensus 93 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~---~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 169 (172)
T 2g4b_A 93 GAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVK---DSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQ 169 (172)
T ss_dssp TTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEE---CTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEe---cCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 467999999999999999999999999999999984 66788999999999999999999999999999999999999
Q ss_pred ec
Q 003091 139 WG 140 (848)
Q Consensus 139 ~a 140 (848)
||
T Consensus 170 ~A 171 (172)
T 2g4b_A 170 RA 171 (172)
T ss_dssp EC
T ss_pred eC
Confidence 97
No 171
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.39 E-value=4.6e-13 Score=130.81 Aligned_cols=81 Identities=17% Similarity=0.361 Sum_probs=75.5
Q ss_pred CccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEEE
Q 003091 59 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 138 (848)
Q Consensus 59 ~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V~ 138 (848)
..++|||+|||+.+++++|.++|++||.|.+|+|+. +..+|.++|||||.|.+.++|.+|+. ++|..++|+.|+|.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~---~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~ 161 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLML---DKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIK 161 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCC---SSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEE
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEE---cCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEe
Confidence 356899999999999999999999999999999984 66789999999999999999999997 99999999999999
Q ss_pred eccCC
Q 003091 139 WGKSV 143 (848)
Q Consensus 139 ~ak~~ 143 (848)
||++.
T Consensus 162 ~a~pk 166 (167)
T 2cjk_A 162 RAEPR 166 (167)
T ss_dssp ECCCC
T ss_pred ecCCC
Confidence 99864
No 172
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.39 E-value=9.1e-13 Score=132.14 Aligned_cols=83 Identities=22% Similarity=0.332 Sum_probs=75.8
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEE
Q 003091 57 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 136 (848)
Q Consensus 57 d~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~ 136 (848)
....++|||+|||+++|+++|.++|++||.|.+|+|+. +..+|.++|||||.|.+.++|.+|+.. +|..++|+.|.
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~---~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~ 85 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMR---DPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVE 85 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE---CTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEE---cCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEee
Confidence 34678999999999999999999999999999999994 777889999999999999999999976 99999999999
Q ss_pred EEeccCC
Q 003091 137 IGWGKSV 143 (848)
Q Consensus 137 V~~ak~~ 143 (848)
|.|+.+.
T Consensus 86 v~~~~~~ 92 (196)
T 1l3k_A 86 PKRAVSR 92 (196)
T ss_dssp EEECCC-
T ss_pred eecccCc
Confidence 9998754
No 173
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.38 E-value=1.2e-12 Score=131.47 Aligned_cols=84 Identities=13% Similarity=0.306 Sum_probs=78.3
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEE
Q 003091 58 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 137 (848)
Q Consensus 58 ~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V 137 (848)
...++|||+|||..+++++|.++|++||.|..|+|+. +..+|.++|||||+|.+.++|.+|+..|||..|+|+.|+|
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~---~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 188 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVK---DSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLV 188 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEE---CTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEee---cCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 4578999999999999999999999999999999984 6668899999999999999999999999999999999999
Q ss_pred EeccCCC
Q 003091 138 GWGKSVA 144 (848)
Q Consensus 138 ~~ak~~~ 144 (848)
.||++..
T Consensus 189 ~~a~~~~ 195 (198)
T 2yh0_A 189 QRASVGA 195 (198)
T ss_dssp EESCCCC
T ss_pred EECCCCC
Confidence 9998653
No 174
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=6.9e-13 Score=116.91 Aligned_cols=77 Identities=19% Similarity=0.309 Sum_probs=65.3
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEE
Q 003091 58 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 137 (848)
Q Consensus 58 ~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V 137 (848)
..+++|||+|||.++++++|.++|++||.|.+|+|+. .++|||||+|.+.++|++|+.. +..+.|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~--------~~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v 72 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPK--------PFRAFAFVTFADDQIAQSLCGE--DLIIKGISVHI 72 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCS--------SCCSCCEEECSCHHHHHHTTTC--EEEETTEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEec--------CCCCEEEEEECCHHHHHHHhcC--CceeCCEEEEE
Confidence 3568999999999999999999999999999999983 2789999999999999754321 34559999999
Q ss_pred EeccCCC
Q 003091 138 GWGKSVA 144 (848)
Q Consensus 138 ~~ak~~~ 144 (848)
.|+++..
T Consensus 73 ~~a~~~~ 79 (88)
T 1wf0_A 73 SNAEPKH 79 (88)
T ss_dssp ECCCCCC
T ss_pred EecCCCC
Confidence 9988654
No 175
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.38 E-value=6.2e-12 Score=134.07 Aligned_cols=81 Identities=23% Similarity=0.447 Sum_probs=75.0
Q ss_pred CCccEEEEecCCCCCCHHHHH----HHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCe
Q 003091 58 PQTTNLYVGNLSPQVDENFLL----RTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEY 133 (848)
Q Consensus 58 ~~~t~LfVgNLp~~vte~~L~----~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~ 133 (848)
..+++|||+|||.++++++|+ .+|++||.|.+|+|+. +++++|||||+|.+.++|.+|+..|||..|.|+
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~------~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 80 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR------SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK 80 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC------CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCc
Confidence 457899999999999999966 8999999999999983 678999999999999999999999999999999
Q ss_pred EEEEEeccCCC
Q 003091 134 ELKIGWGKSVA 144 (848)
Q Consensus 134 ~L~V~~ak~~~ 144 (848)
.|+|.|++...
T Consensus 81 ~l~v~~a~~~~ 91 (282)
T 3pgw_A 81 PMRIQYAKTDS 91 (282)
T ss_pred EEEEEEeccCc
Confidence 99999998654
No 176
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.38 E-value=2e-13 Score=131.80 Aligned_cols=81 Identities=14% Similarity=0.097 Sum_probs=72.5
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEE
Q 003091 58 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 137 (848)
Q Consensus 58 ~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V 137 (848)
...++|||+|||+++|+++|+++|++|| |.+|+|+. +.. ++++|||||+|.+.++|++|| .+|+..|+|+.|.|
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~---d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V 117 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEI---GPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIEL 117 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCC---SSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEE---CCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEE
Confidence 4567899999999999999999999999 77999984 554 899999999999999999999 89999999999999
Q ss_pred EeccCCC
Q 003091 138 GWGKSVA 144 (848)
Q Consensus 138 ~~ak~~~ 144 (848)
.++....
T Consensus 118 ~~a~~~~ 124 (139)
T 2hgn_A 118 FLNSTTG 124 (139)
T ss_dssp EECCCSC
T ss_pred EECCCCC
Confidence 9877543
No 177
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.37 E-value=1e-12 Score=115.12 Aligned_cols=72 Identities=26% Similarity=0.461 Sum_probs=66.8
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhccC----C-------CeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcC
Q 003091 58 PQTTNLYVGNLSPQVDENFLLRTFGRF----G-------PIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQ 126 (848)
Q Consensus 58 ~~~t~LfVgNLp~~vte~~L~~~F~~f----G-------~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~ln 126 (848)
...++|||+|||+++++++|.++|++| | .|.+|+++. .+|||||+|.+.++|.+|+ .||
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~---------~kg~afV~f~~~~~a~~A~-~l~ 73 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ---------DKNFAFLEFRSVDETTQAM-AFD 73 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECS---------SSSEEEEEESSHHHHHHHG-GGT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecC---------CCcEEEEEcCCHHHHHHHH-hcC
Confidence 357899999999999999999999999 8 899999983 4799999999999999999 999
Q ss_pred CceecCeEEEEEe
Q 003091 127 GVVVYEYELKIGW 139 (848)
Q Consensus 127 G~~i~G~~L~V~~ 139 (848)
|..|+|+.|+|..
T Consensus 74 g~~~~g~~l~V~r 86 (87)
T 2hzc_A 74 GIIFQGQSLKIRR 86 (87)
T ss_dssp TCEETTEECEEEC
T ss_pred CCEECCeEEEEeC
Confidence 9999999999974
No 178
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.37 E-value=1.2e-12 Score=134.59 Aligned_cols=80 Identities=28% Similarity=0.503 Sum_probs=73.3
Q ss_pred CccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEEE
Q 003091 59 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 138 (848)
Q Consensus 59 ~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V~ 138 (848)
..++|||+|||+.+++++|.++|++||.|.+|+|+. + .+.++|||||+|.+.++|.+|+..|||..|+|+.|.|.
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~---d--~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~ 176 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC---D--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVG 176 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE---E--TTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeec---c--CCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 356899999999999999999999999999999984 3 24478999999999999999999999999999999999
Q ss_pred eccCC
Q 003091 139 WGKSV 143 (848)
Q Consensus 139 ~ak~~ 143 (848)
||++.
T Consensus 177 ~a~~~ 181 (213)
T 4f02_A 177 RFKSR 181 (213)
T ss_dssp ECCCH
T ss_pred EcCCC
Confidence 99754
No 179
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=1.2e-12 Score=121.43 Aligned_cols=77 Identities=23% Similarity=0.333 Sum_probs=67.5
Q ss_pred CccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCccccc---CCcccEEEEEeCCHHHHHHHHHHcCCceecCeEE
Q 003091 59 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEER---RRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYEL 135 (848)
Q Consensus 59 ~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~t---g~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L 135 (848)
..++|||+|||+++++++|+++|++||.|. +.++. +..+ |+++|||||+|.+.++|++|+..|++ ++|+.|
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~---~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~~G~~~ 80 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPH---KAESKSYFPPKGYAFLLFQEESSVQALIDACLE--EDGKLY 80 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTT---SSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--ETTEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEee---cCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--cCCcEE
Confidence 468999999999999999999999999999 77774 4444 78999999999999999999999954 788888
Q ss_pred EEEecc
Q 003091 136 KIGWGK 141 (848)
Q Consensus 136 ~V~~ak 141 (848)
.+..+.
T Consensus 81 ~~~~~~ 86 (114)
T 2dnl_A 81 LCVSSP 86 (114)
T ss_dssp EEECCS
T ss_pred EeccCC
Confidence 887654
No 180
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.35 E-value=9.2e-13 Score=124.97 Aligned_cols=79 Identities=10% Similarity=0.097 Sum_probs=70.3
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhccCCCee--EEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEE
Q 003091 58 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIA--SVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYEL 135 (848)
Q Consensus 58 ~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~--svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L 135 (848)
...++|||+|||+++|+++|+++|++| .|. +|+|+. +.. |+++|||||+|.+.++|++|+. ++|..|+|+.|
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~---d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I 113 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPV---DPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYI 113 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCC---CSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEE---CCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEE
Confidence 456789999999999999999999999 566 899884 555 8999999999999999999997 57899999999
Q ss_pred EEEeccC
Q 003091 136 KIGWGKS 142 (848)
Q Consensus 136 ~V~~ak~ 142 (848)
.|.++..
T Consensus 114 ~V~~a~~ 120 (126)
T 2hgm_A 114 EVFKSSQ 120 (126)
T ss_dssp CCEEECH
T ss_pred EEEECCH
Confidence 9988754
No 181
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.34 E-value=2.4e-12 Score=129.06 Aligned_cols=83 Identities=18% Similarity=0.288 Sum_probs=74.3
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEE
Q 003091 58 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 137 (848)
Q Consensus 58 ~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V 137 (848)
...++|||+|||+.+++++|.++|++||.|..|+|+. +..+|.++|||||.|.+.++|.+|+.. +|..|+|+.|.|
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v 177 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMT---DRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEV 177 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEE---CTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEE
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEee---cCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEE
Confidence 3468999999999999999999999999999999994 667889999999999999999999976 899999999999
Q ss_pred EeccCCC
Q 003091 138 GWGKSVA 144 (848)
Q Consensus 138 ~~ak~~~ 144 (848)
.||.+..
T Consensus 178 ~~a~~k~ 184 (196)
T 1l3k_A 178 RKALSKQ 184 (196)
T ss_dssp EECC---
T ss_pred EecCChh
Confidence 9998664
No 182
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.34 E-value=7.7e-13 Score=125.00 Aligned_cols=81 Identities=14% Similarity=0.126 Sum_probs=72.3
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhccCCCe----eEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCe
Q 003091 58 PQTTNLYVGNLSPQVDENFLLRTFGRFGPI----ASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEY 133 (848)
Q Consensus 58 ~~~t~LfVgNLp~~vte~~L~~~F~~fG~I----~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~ 133 (848)
...++|||+|||+++|+++|+++|++||.| ..|.|+. + .+|+++|||||+|.+.++|++|+.. ||..|+|+
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~---d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR 95 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVT---Y-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKR 95 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEE---C-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEE---C-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCe
Confidence 456899999999999999999999999975 6899984 5 4789999999999999999999985 99999999
Q ss_pred EEEEEeccCC
Q 003091 134 ELKIGWGKSV 143 (848)
Q Consensus 134 ~L~V~~ak~~ 143 (848)
.|.|..+...
T Consensus 96 ~i~V~~a~~~ 105 (123)
T 2dha_A 96 YIELFRSTAA 105 (123)
T ss_dssp EECCEEECHH
T ss_pred EEEEEECCHH
Confidence 9999887543
No 183
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.34 E-value=3.1e-12 Score=124.83 Aligned_cols=80 Identities=28% Similarity=0.468 Sum_probs=74.5
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecC--eEE
Q 003091 58 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYE--YEL 135 (848)
Q Consensus 58 ~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G--~~L 135 (848)
...++|||+|||..+++++|.++|++||.|..|.|+. +..+++++|||||.|.+.++|.+|+..|||..+.| ++|
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~---~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l 163 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILR---DKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPL 163 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEE---CTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCC
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEE---cCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEE
Confidence 3568999999999999999999999999999999984 66678899999999999999999999999999988 999
Q ss_pred EEEec
Q 003091 136 KIGWG 140 (848)
Q Consensus 136 ~V~~a 140 (848)
+|.||
T Consensus 164 ~V~~A 168 (168)
T 1b7f_A 164 SVRLA 168 (168)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99986
No 184
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.34 E-value=3.2e-12 Score=124.13 Aligned_cols=79 Identities=32% Similarity=0.529 Sum_probs=72.2
Q ss_pred cEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEec
Q 003091 61 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWG 140 (848)
Q Consensus 61 t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V~~a 140 (848)
.+|||+|||+++|+++|.++|++||.|.+|+|+. +. .++++|||||+|.+.++|.+|+..|||..+.|+.|+|.|+
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~---~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~ 76 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMI---DK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWA 76 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEEC---CC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEE---CC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEc
Confidence 4799999999999999999999999999999995 33 4678999999999999999999999999999999999998
Q ss_pred cCC
Q 003091 141 KSV 143 (848)
Q Consensus 141 k~~ 143 (848)
.+.
T Consensus 77 ~~~ 79 (166)
T 3md3_A 77 FQS 79 (166)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 185
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.33 E-value=2e-12 Score=131.68 Aligned_cols=82 Identities=23% Similarity=0.512 Sum_probs=73.6
Q ss_pred CccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEEE
Q 003091 59 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 138 (848)
Q Consensus 59 ~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V~ 138 (848)
..++|||+|||.++|+++|.++|++||.|.+|+|+. +..+++++|||||.|.+.++|.+|+..|||..|+|+.|+|.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~---~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 103 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSW---DSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVG 103 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECC---C-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEE
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEee---cCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEe
Confidence 467999999999999999999999999999999984 66788999999999999999999999999999999999998
Q ss_pred eccCC
Q 003091 139 WGKSV 143 (848)
Q Consensus 139 ~ak~~ 143 (848)
|+...
T Consensus 104 ~~~~~ 108 (216)
T 2qfj_A 104 RPSNI 108 (216)
T ss_dssp CCSCC
T ss_pred cCCCc
Confidence 86643
No 186
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.32 E-value=8.5e-12 Score=132.97 Aligned_cols=79 Identities=27% Similarity=0.469 Sum_probs=71.9
Q ss_pred CCCCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceec-CeE
Q 003091 56 GDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVY-EYE 134 (848)
Q Consensus 56 ~d~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~-G~~ 134 (848)
..+.+++|||+|||..+++++|+++|++||.|.+|+|+. + .+|||||+|.+.++|.+|+..|||..|+ |+.
T Consensus 203 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~---~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~ 274 (282)
T 3pgw_A 203 ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVP---G-----RHDIAFVEFDNEVQAGAARDALQGFKITQNNA 274 (282)
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEec---C-----CCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCE
Confidence 345678999999999999999999999999999999983 1 2589999999999999999999999999 999
Q ss_pred EEEEeccC
Q 003091 135 LKIGWGKS 142 (848)
Q Consensus 135 L~V~~ak~ 142 (848)
|+|.||+.
T Consensus 275 l~v~~akk 282 (282)
T 3pgw_A 275 MKISFAKK 282 (282)
T ss_pred EEEEEecC
Confidence 99999973
No 187
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.31 E-value=3.6e-12 Score=123.90 Aligned_cols=80 Identities=21% Similarity=0.411 Sum_probs=73.6
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeE--E
Q 003091 58 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYE--L 135 (848)
Q Consensus 58 ~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~--L 135 (848)
...++|||+|||..+++++|..+|++||.|..|+|+. +..+|.++|||||.|.+.++|.+|+..|||..++|+. |
T Consensus 86 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~---~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i 162 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILV---DQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPI 162 (167)
T ss_dssp GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE---CTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCC
T ss_pred CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEe---cCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccce
Confidence 3467999999999999999999999999999999984 6667889999999999999999999999999999964 8
Q ss_pred EEEec
Q 003091 136 KIGWG 140 (848)
Q Consensus 136 ~V~~a 140 (848)
+|.||
T Consensus 163 ~v~~A 167 (167)
T 1fxl_A 163 TVKFA 167 (167)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99886
No 188
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.30 E-value=4.8e-12 Score=124.19 Aligned_cols=82 Identities=17% Similarity=0.421 Sum_probs=72.7
Q ss_pred CccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccC--CcccEEEEEeCCHHHHHHHHHHcCCceec---Ce
Q 003091 59 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERR--RQRNCGFVAFMNRADGQAAKDEMQGVVVY---EY 133 (848)
Q Consensus 59 ~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg--~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~---G~ 133 (848)
..++|||+|||+++|+++|.++|++||.|.+|+|+. +..++ +++|||||.|.+.++|.+|+..|+|..+. ++
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~---~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~ 78 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLR---DRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHH 78 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEE---ECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSS
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEe---cCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCcc
Confidence 468999999999999999999999999999999994 55555 78999999999999999999999998875 67
Q ss_pred EEEEEeccCC
Q 003091 134 ELKIGWGKSV 143 (848)
Q Consensus 134 ~L~V~~ak~~ 143 (848)
.+.+.++...
T Consensus 79 ~~~~~~~~~~ 88 (175)
T 3nmr_A 79 PIQMKPADSE 88 (175)
T ss_dssp CCEEEECGGG
T ss_pred ceEEcccccc
Confidence 7888776543
No 189
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.30 E-value=5.7e-12 Score=124.29 Aligned_cols=78 Identities=19% Similarity=0.249 Sum_probs=71.4
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEE
Q 003091 58 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 137 (848)
Q Consensus 58 ~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V 137 (848)
...++|||+|||..+++++|.++|++||.|..+ . .++.++|||||+|.+.++|.+|+..|||..|+|+.|+|
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~--~------~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 168 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV--S------QDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSL 168 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE--C------SSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEE
T ss_pred ccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe--c------CCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 457899999999999999999999999988766 2 36788999999999999999999999999999999999
Q ss_pred EeccCC
Q 003091 138 GWGKSV 143 (848)
Q Consensus 138 ~~ak~~ 143 (848)
.||++.
T Consensus 169 ~~a~~k 174 (175)
T 1fje_B 169 YYTGEK 174 (175)
T ss_dssp EECSSC
T ss_pred EecCCC
Confidence 999865
No 190
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.29 E-value=5.2e-12 Score=123.94 Aligned_cols=80 Identities=25% Similarity=0.435 Sum_probs=72.5
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceec---CeE
Q 003091 58 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVY---EYE 134 (848)
Q Consensus 58 ~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~---G~~ 134 (848)
...++|||+|||..+++++|.++|++||.|.+|+|+. + .+|+++|||||+|.+.++|.+|+..|||..+. |++
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~---~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~ 168 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILR---G-PDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSP 168 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE---C-TTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSC
T ss_pred CCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEE---C-CCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCC
Confidence 3577999999999999999999999999999999984 3 35788999999999999999999999998775 499
Q ss_pred EEEEecc
Q 003091 135 LKIGWGK 141 (848)
Q Consensus 135 L~V~~ak 141 (848)
|+|.||.
T Consensus 169 l~V~~ad 175 (175)
T 3nmr_A 169 MVVKFAD 175 (175)
T ss_dssp CEEEECC
T ss_pred eEEEecC
Confidence 9999973
No 191
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.29 E-value=4.1e-12 Score=124.05 Aligned_cols=79 Identities=19% Similarity=0.373 Sum_probs=72.2
Q ss_pred CccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEEE
Q 003091 59 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 138 (848)
Q Consensus 59 ~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V~ 138 (848)
++++|||+|||+++|+++|.++|++||.|.+|+|+. +..+|+++|||||.|.+.++|.+|+.. +..++|+.|.|.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~ 76 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMK---DPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPK 76 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCC---CTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEE---CCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccc
Confidence 468999999999999999999999999999999984 667899999999999999999999984 678999999998
Q ss_pred eccC
Q 003091 139 WGKS 142 (848)
Q Consensus 139 ~ak~ 142 (848)
|+.+
T Consensus 77 ~~~~ 80 (167)
T 2cjk_A 77 RAIP 80 (167)
T ss_dssp ECCC
T ss_pred cccc
Confidence 8753
No 192
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.28 E-value=1.2e-11 Score=113.61 Aligned_cols=81 Identities=12% Similarity=0.038 Sum_probs=70.6
Q ss_pred CccEEEEecCCC-----CCCHHHHHHHhccCCCeeEEEEeCCCcccc-cCCcccEEEEEeCCHHHHHHHHHHcCCceecC
Q 003091 59 QTTNLYVGNLSP-----QVDENFLLRTFGRFGPIASVKIMWPRTEEE-RRRQRNCGFVAFMNRADGQAAKDEMQGVVVYE 132 (848)
Q Consensus 59 ~~t~LfVgNLp~-----~vte~~L~~~F~~fG~I~svkI~~pr~d~~-tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G 132 (848)
.+++|+|.||.. .-++++|+++|++||.|.+|.|+. +.. +++++|||||+|.+.++|.+|+..|||..++|
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~---~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~G 83 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFE---IPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGG 83 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEE---CSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEec---CCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 467999999963 237899999999999999999984 333 36789999999999999999999999999999
Q ss_pred eEEEEEeccC
Q 003091 133 YELKIGWGKS 142 (848)
Q Consensus 133 ~~L~V~~ak~ 142 (848)
+.|.|.|+..
T Consensus 84 r~i~v~~a~~ 93 (105)
T 2pe8_A 84 RVVKACFYNL 93 (105)
T ss_dssp EECEEEECCH
T ss_pred cEEEEEEcCH
Confidence 9999999864
No 193
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.26 E-value=8.4e-12 Score=133.72 Aligned_cols=83 Identities=23% Similarity=0.424 Sum_probs=74.9
Q ss_pred CCCccEEEEecCCCC-CCHHHHHHHhccCCCeeEEEEeCCCcccc-cCCcccEEEEEeCCHHHHHHHHHHcCCceecCeE
Q 003091 57 DPQTTNLYVGNLSPQ-VDENFLLRTFGRFGPIASVKIMWPRTEEE-RRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYE 134 (848)
Q Consensus 57 d~~~t~LfVgNLp~~-vte~~L~~~F~~fG~I~svkI~~pr~d~~-tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~ 134 (848)
....++|||+|||+. +++++|.++|++||.|..|+|+. +.. ||.++|||||.|.+.++|.+|+ .|||..|+|+.
T Consensus 207 ~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~---~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~ 282 (292)
T 2ghp_A 207 TLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPA---GQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNRE 282 (292)
T ss_dssp CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCS---CCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEE
T ss_pred CCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEe---cCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcE
Confidence 345789999999999 99999999999999999999984 443 5889999999999999999999 99999999999
Q ss_pred EEEEeccCC
Q 003091 135 LKIGWGKSV 143 (848)
Q Consensus 135 L~V~~ak~~ 143 (848)
|.|.||+++
T Consensus 283 i~V~~a~~k 291 (292)
T 2ghp_A 283 ISVSLADKK 291 (292)
T ss_dssp EEEEECCCC
T ss_pred EEEEEecCC
Confidence 999999865
No 194
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.26 E-value=1.1e-11 Score=125.93 Aligned_cols=80 Identities=10% Similarity=0.125 Sum_probs=71.6
Q ss_pred CccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEEE
Q 003091 59 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 138 (848)
Q Consensus 59 ~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V~ 138 (848)
..++|||+|||+.+++++|.++|++||.|.+|+|+. +. ++.++|||||+|.+.++|.+|+..++ ..++|+.|.|.
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~---~~-~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~ 182 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRR---TL-HKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLIL 182 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEE---CT-TCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEE
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEE---CC-CCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEE
Confidence 357999999999999999999999999999999984 32 47899999999999999999997664 59999999999
Q ss_pred eccCC
Q 003091 139 WGKSV 143 (848)
Q Consensus 139 ~ak~~ 143 (848)
|++..
T Consensus 183 ~~~~y 187 (193)
T 2voo_A 183 FKDDY 187 (193)
T ss_dssp ETTTC
T ss_pred EhHHH
Confidence 98754
No 195
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.24 E-value=2.3e-11 Score=128.82 Aligned_cols=76 Identities=32% Similarity=0.540 Sum_probs=71.2
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEE
Q 003091 58 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 137 (848)
Q Consensus 58 ~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V 137 (848)
...++|||+|||+++|+++|..+|++||.|.+|+|+ +++|||||.|.+.++|..|+..|||..|.|+.|+|
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~---------~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v 90 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFIN---------RDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRI 90 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEE---------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEe---------CCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEe
Confidence 457899999999999999999999999999999998 35799999999999999999999999999999999
Q ss_pred EeccC
Q 003091 138 GWGKS 142 (848)
Q Consensus 138 ~~ak~ 142 (848)
.|+.+
T Consensus 91 ~~a~~ 95 (261)
T 3sde_A 91 RFATH 95 (261)
T ss_dssp EECCC
T ss_pred eeccc
Confidence 99863
No 196
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.24 E-value=9.6e-12 Score=129.13 Aligned_cols=80 Identities=24% Similarity=0.419 Sum_probs=73.5
Q ss_pred CCccEEEEecCCC-CCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEE
Q 003091 58 PQTTNLYVGNLSP-QVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 136 (848)
Q Consensus 58 ~~~t~LfVgNLp~-~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~ 136 (848)
+.+++|||+|||+ ++++++|.++|++||.|.+|+|+. + .+|||||+|.+.++|.+|+..|||..|.|+.|.
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~---~-----~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~ 103 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILF---N-----KKENALVQMADGNQAQLAMSHLNGHKLHGKPIR 103 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECC---T-----TSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEE---C-----CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 4678999999999 999999999999999999999994 2 278999999999999999999999999999999
Q ss_pred EEeccCCCC
Q 003091 137 IGWGKSVAL 145 (848)
Q Consensus 137 V~~ak~~~~ 145 (848)
|.|++....
T Consensus 104 v~~a~~~~~ 112 (229)
T 2adc_A 104 ITLSKHQNV 112 (229)
T ss_dssp EECCSCCCC
T ss_pred EEEecCccc
Confidence 999986643
No 197
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.24 E-value=2.3e-11 Score=129.83 Aligned_cols=83 Identities=20% Similarity=0.426 Sum_probs=77.4
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEE
Q 003091 58 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 137 (848)
Q Consensus 58 ~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V 137 (848)
+..++|||+|||+.+++++|..+|++||.|.+|+|+. +..+|.++|||||.|.+.++|.+|+..|+|..++|+.|.|
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~---~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v 169 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVY---SERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYV 169 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE---CTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEe---eCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 3467999999999999999999999999999999984 6678999999999999999999999999999999999999
Q ss_pred EeccCC
Q 003091 138 GWGKSV 143 (848)
Q Consensus 138 ~~ak~~ 143 (848)
.|+.+.
T Consensus 170 ~~a~~~ 175 (284)
T 3smz_A 170 HWTDAG 175 (284)
T ss_dssp EECCGG
T ss_pred EECCCC
Confidence 998754
No 198
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.23 E-value=5.2e-11 Score=110.07 Aligned_cols=79 Identities=11% Similarity=0.164 Sum_probs=68.4
Q ss_pred CCccEEEEecCCCCCC-----------HHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcC
Q 003091 58 PQTTNLYVGNLSPQVD-----------ENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQ 126 (848)
Q Consensus 58 ~~~t~LfVgNLp~~vt-----------e~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~ln 126 (848)
..+++|+|.||....+ +++|+++|++||.|.+|.|+ +. .++|||||+|.+.++|.+|+..||
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~----~~---~~~G~afV~f~~~~~A~~Ai~~ln 85 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLF----DR---HPDGVASVSFRDPEEADYCIQTLD 85 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEE----TT---CTTCEEEEECSCHHHHHHHHHHST
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEe----cC---CCCEEEEEEECCHHHHHHHHHHcC
Confidence 4577999999954433 58999999999999999764 22 378999999999999999999999
Q ss_pred CceecCeEEEEEeccCC
Q 003091 127 GVVVYEYELKIGWGKSV 143 (848)
Q Consensus 127 G~~i~G~~L~V~~ak~~ 143 (848)
|..|+|+.|+|.|+.+.
T Consensus 86 g~~~~gr~l~v~~a~~~ 102 (112)
T 2dit_A 86 GRWFGGRQITAQAWDGT 102 (112)
T ss_dssp TCEETTEECEEEECCSC
T ss_pred CCEECCcEEEEEEeCCC
Confidence 99999999999998764
No 199
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.23 E-value=1.5e-11 Score=123.93 Aligned_cols=79 Identities=19% Similarity=0.294 Sum_probs=72.6
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHhccCC-CeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceec-CeE
Q 003091 57 DPQTTNLYVGNLSPQVDENFLLRTFGRFG-PIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVY-EYE 134 (848)
Q Consensus 57 d~~~t~LfVgNLp~~vte~~L~~~F~~fG-~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~-G~~ 134 (848)
.+++++|||+|||..+++++|.++|++|| .|.+|+|+. ..+|||||+|.+.++|.+|+..|||..++ |+.
T Consensus 117 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~--------~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~ 188 (198)
T 1qm9_A 117 FPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQ--------KDRKMALIQMGSVEEAVQALIDLHNHDLGENHH 188 (198)
T ss_dssp CCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESS--------TTSSCEEEECSSHHHHHHHHHHHTSSCCSSCCS
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEe--------CCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCe
Confidence 35678999999999999999999999999 999999973 24789999999999999999999999999 999
Q ss_pred EEEEeccCC
Q 003091 135 LKIGWGKSV 143 (848)
Q Consensus 135 L~V~~ak~~ 143 (848)
|+|.|+++.
T Consensus 189 l~v~~a~~~ 197 (198)
T 1qm9_A 189 LRVSFSKST 197 (198)
T ss_dssp CCEEEECCC
T ss_pred EEEEeeccc
Confidence 999999853
No 200
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.22 E-value=2.3e-11 Score=129.81 Aligned_cols=83 Identities=12% Similarity=0.206 Sum_probs=76.1
Q ss_pred CCccEEEEecCCCCC-CHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEE
Q 003091 58 PQTTNLYVGNLSPQV-DENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 136 (848)
Q Consensus 58 ~~~t~LfVgNLp~~v-te~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~ 136 (848)
...++|||+|||+.+ ++++|.++|+.||.|.+|+|+. +. +|+++|||||.|.+.++|.+|+..|||..|+|+.|+
T Consensus 182 ~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~---~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 257 (284)
T 3smz_A 182 LHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLAC---GQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLR 257 (284)
T ss_dssp TSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEE---CS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEE---CC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEE
Confidence 457899999999996 9999999999999999999984 33 688999999999999999999999999999999999
Q ss_pred EEeccCCC
Q 003091 137 IGWGKSVA 144 (848)
Q Consensus 137 V~~ak~~~ 144 (848)
|.|+++..
T Consensus 258 v~~a~~~~ 265 (284)
T 3smz_A 258 VSFCAPGP 265 (284)
T ss_dssp EEECCSSS
T ss_pred EEEecCCC
Confidence 99998653
No 201
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.22 E-value=6.9e-11 Score=119.12 Aligned_cols=77 Identities=25% Similarity=0.431 Sum_probs=71.7
Q ss_pred ccEEEEecCCC-CCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEEE
Q 003091 60 TTNLYVGNLSP-QVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 138 (848)
Q Consensus 60 ~t~LfVgNLp~-~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V~ 138 (848)
+++|||+|||+ .+++++|..+|++||.|.+|+|+. + .+|||||.|.+.++|..|+..|||..+.|+.|+|.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~---~-----~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~ 74 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILF---N-----KKENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 74 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECST---T-----CSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEE
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEe---C-----CCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEE
Confidence 57999999999 999999999999999999999984 2 26899999999999999999999999999999999
Q ss_pred eccCCC
Q 003091 139 WGKSVA 144 (848)
Q Consensus 139 ~ak~~~ 144 (848)
|++...
T Consensus 75 ~a~~~~ 80 (198)
T 1qm9_A 75 LSKHQN 80 (198)
T ss_dssp ECCCCS
T ss_pred EecCCC
Confidence 998764
No 202
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.21 E-value=2.5e-11 Score=126.04 Aligned_cols=79 Identities=19% Similarity=0.294 Sum_probs=72.6
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHhccCC-CeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceec-CeE
Q 003091 57 DPQTTNLYVGNLSPQVDENFLLRTFGRFG-PIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVY-EYE 134 (848)
Q Consensus 57 d~~~t~LfVgNLp~~vte~~L~~~F~~fG-~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~-G~~ 134 (848)
.+.+++|||+|||..+++++|.++|++|| .|..|+|+. ..+|||||+|.+.++|.+|+..|||..++ |+.
T Consensus 148 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~--------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~ 219 (229)
T 2adc_A 148 FPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQ--------KDRKMALIQMGSVEEAVQALIDLHNHDLGENHH 219 (229)
T ss_dssp CCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECS--------SSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEE--------CCCcEEEEEECCHHHHHHHHHHHCCCccCCCCe
Confidence 34578999999999999999999999999 999999973 24789999999999999999999999999 999
Q ss_pred EEEEeccCC
Q 003091 135 LKIGWGKSV 143 (848)
Q Consensus 135 L~V~~ak~~ 143 (848)
|+|.||++.
T Consensus 220 l~v~~a~~~ 228 (229)
T 2adc_A 220 LRVSFSKST 228 (229)
T ss_dssp CEEEECSSC
T ss_pred EEEEEecCC
Confidence 999999863
No 203
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.21 E-value=5.5e-12 Score=124.41 Aligned_cols=81 Identities=23% Similarity=0.366 Sum_probs=71.8
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEE
Q 003091 58 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 137 (848)
Q Consensus 58 ~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V 137 (848)
...++|||+|||+++++++|+++|..||.|..+.|. +..++.++|||||.|.+.++|.+|+ .|||..|.|+.|+|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~----~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v 85 (175)
T 1fje_B 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVV----DVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKL 85 (175)
T ss_dssp SSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCC----EEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEE----ECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEE
Confidence 457899999999999999999999999987763332 5567889999999999999999999 59999999999999
Q ss_pred EeccCC
Q 003091 138 GWGKSV 143 (848)
Q Consensus 138 ~~ak~~ 143 (848)
.|+++.
T Consensus 86 ~~~~~~ 91 (175)
T 1fje_B 86 EKPKGR 91 (175)
T ss_dssp ECCCCS
T ss_pred ecCCCc
Confidence 998754
No 204
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.18 E-value=5.4e-11 Score=116.63 Aligned_cols=75 Identities=25% Similarity=0.461 Sum_probs=67.8
Q ss_pred CccEEEEecCCCCCCHHHHHHHhccC----C-------CeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCC
Q 003091 59 QTTNLYVGNLSPQVDENFLLRTFGRF----G-------PIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQG 127 (848)
Q Consensus 59 ~~t~LfVgNLp~~vte~~L~~~F~~f----G-------~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG 127 (848)
+.++|||+|||+++|+++|.++|++| | .|.++++. +++|||||.|.+.++|.+|+ .|||
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~---------~~~g~afV~f~~~~~A~~A~-~~~~ 72 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN---------QDKNFAFLEFRSVDETTQAM-AFDG 72 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE---------TTTTEEEEEESSHHHHHHHG-GGTT
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec---------CCCCEEEEEeCCHHHHHHHH-HhCC
Confidence 46899999999999999999999999 6 77777776 46899999999999999999 8999
Q ss_pred ceecCeEEEEEeccCC
Q 003091 128 VVVYEYELKIGWGKSV 143 (848)
Q Consensus 128 ~~i~G~~L~V~~ak~~ 143 (848)
..+.|+.|+|.|++..
T Consensus 73 ~~~~g~~i~v~~~~~~ 88 (172)
T 2g4b_A 73 IIFQGQSLKIRRPHDY 88 (172)
T ss_dssp CEETTEECEEECCSSC
T ss_pred cEecCceeeecCCccc
Confidence 9999999999986543
No 205
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.16 E-value=7.4e-11 Score=108.19 Aligned_cols=83 Identities=17% Similarity=0.139 Sum_probs=68.9
Q ss_pred CCccEEEEecCC--CCCC--------HHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCC
Q 003091 58 PQTTNLYVGNLS--PQVD--------ENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQG 127 (848)
Q Consensus 58 ~~~t~LfVgNLp--~~vt--------e~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG 127 (848)
.+++.|.|.|+= ..+. +++|++.|++||.|.+|+|+.++ +..+++++|||||+|.+.++|.+|+..|||
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~-~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG 81 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPV-DGVEVPGCGKIFVEFTSVFDCQKAMQGLTG 81 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCB-TTBCCTTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccC-CCCCcCCcEEEEEEECCHHHHHHHHHHhCC
Confidence 457789999983 2332 36899999999999999998533 112346889999999999999999999999
Q ss_pred ceecCeEEEEEecc
Q 003091 128 VVVYEYELKIGWGK 141 (848)
Q Consensus 128 ~~i~G~~L~V~~ak 141 (848)
..++|+.|.|.|+.
T Consensus 82 ~~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 82 RKFANRVVVTKYCD 95 (105)
T ss_dssp CEETTEECEEEEEC
T ss_pred CEeCCCEEEEEEeC
Confidence 99999999999964
No 206
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.16 E-value=9e-11 Score=117.72 Aligned_cols=76 Identities=25% Similarity=0.449 Sum_probs=67.6
Q ss_pred CccEEEEecCCCCCCHHHHHHHhccC----C-------CeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCC
Q 003091 59 QTTNLYVGNLSPQVDENFLLRTFGRF----G-------PIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQG 127 (848)
Q Consensus 59 ~~t~LfVgNLp~~vte~~L~~~F~~f----G-------~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG 127 (848)
..++|||+|||+++++++|.++|++| | .|.++++. +++|||||.|.+.++|.+|+ .|||
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~---------~~~g~afV~F~~~~~A~~Al-~l~g 72 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN---------QDKNFAFLEFRSVDETTQAM-AFDG 72 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE---------TTTTEEEEEESCSHHHHHHG-GGTT
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec---------CCCCEEEEEeCCHHHHHHHH-HhcC
Confidence 46899999999999999999999999 5 56666655 56899999999999999999 8999
Q ss_pred ceecCeEEEEEeccCCC
Q 003091 128 VVVYEYELKIGWGKSVA 144 (848)
Q Consensus 128 ~~i~G~~L~V~~ak~~~ 144 (848)
..|+|+.|+|.|++...
T Consensus 73 ~~~~g~~i~v~~~~~~~ 89 (198)
T 2yh0_A 73 IIFQGQSLKIRRPHDYQ 89 (198)
T ss_dssp EEETTEEEEEECCCCCC
T ss_pred CEEcCceEEEeCCCCCC
Confidence 99999999999987654
No 207
>2dt7_B Splicing factor 3 subunit 1; structure genomics, SF3A120, SF3A60, SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.217.1.1
Probab=99.16 E-value=6.2e-12 Score=110.30 Aligned_cols=56 Identities=20% Similarity=0.287 Sum_probs=50.8
Q ss_pred chhhhhHHHHHHHHHhhccHHHHHHHHHhcCCCCcccccccCCCCCcceeeEEeeee
Q 003091 204 DRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSF 260 (848)
Q Consensus 204 d~~~~~~Id~~a~~V~~~G~~FE~~l~~~e~~np~f~FL~d~~s~~h~YYrwkl~s~ 260 (848)
......||++||.||+++|..||.+||+++.+||+|+||. ..+++|.||+|+|.++
T Consensus 28 ~~kdl~iIk~TA~FVArnG~~Fe~~l~~re~~NpqF~FL~-p~h~~~~yy~~~v~~Y 83 (85)
T 2dt7_B 28 SAFDLDVVKLTAQFVARNGRQFLTQLMQKEQRNYQFDFLR-PQHSLFNYFTKLVEQY 83 (85)
T ss_dssp CHHHHHHHHHHHHHHHHHCHHHHHHHHHHTTTCGGGGGGS-TTSTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhccHHHHHHHHHhcCCCCceeeCC-CCCCchHHHHHHHHHH
Confidence 3445689999999999999999999999999999999998 6799999999998654
No 208
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.15 E-value=4.2e-11 Score=122.78 Aligned_cols=78 Identities=13% Similarity=0.146 Sum_probs=68.6
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhccCCCe--eEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCe--
Q 003091 58 PQTTNLYVGNLSPQVDENFLLRTFGRFGPI--ASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEY-- 133 (848)
Q Consensus 58 ~~~t~LfVgNLp~~vte~~L~~~F~~fG~I--~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~-- 133 (848)
+++++|||+|||+.+|+++|+++|++||.| .+|+|+. +. +..+|||||+|.+.++|.+||..|||..|.|.
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~---~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~ 195 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFS---GK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNG 195 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECS---CC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSS
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEc---CC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCC
Confidence 456799999999999999999999999999 8999983 32 45569999999999999999999999999885
Q ss_pred --EEEEEec
Q 003091 134 --ELKIGWG 140 (848)
Q Consensus 134 --~L~V~~a 140 (848)
++.|.||
T Consensus 196 ~~p~~vk~~ 204 (205)
T 3tyt_A 196 PYPYTLKLC 204 (205)
T ss_dssp SSCEECEEE
T ss_pred CcceEEEec
Confidence 5777765
No 209
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.12 E-value=2.7e-11 Score=110.91 Aligned_cols=73 Identities=10% Similarity=0.145 Sum_probs=64.0
Q ss_pred EEecCCCCCCHHHHHHHh------------ccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceec
Q 003091 64 YVGNLSPQVDENFLLRTF------------GRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVY 131 (848)
Q Consensus 64 fVgNLp~~vte~~L~~~F------------~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~ 131 (848)
+++||+..+++++|.++| ++||.|.+|.|+. +. +++++|||||.|.+.++|.+|+..|||..++
T Consensus 19 ~~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~---~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~ 94 (104)
T 1jmt_A 19 SADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCD---NL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFN 94 (104)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECC---SS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEET
T ss_pred ccCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEe---CC-CCCccEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 367888888988887777 9999999999984 32 3688999999999999999999999999999
Q ss_pred CeEEEEEec
Q 003091 132 EYELKIGWG 140 (848)
Q Consensus 132 G~~L~V~~a 140 (848)
|+.|+|.|+
T Consensus 95 Gr~i~v~~s 103 (104)
T 1jmt_A 95 GQPIHAELS 103 (104)
T ss_dssp TEECCEEEC
T ss_pred CEEEEEEEc
Confidence 999999985
No 210
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.12 E-value=5.7e-11 Score=130.72 Aligned_cols=79 Identities=20% Similarity=0.282 Sum_probs=68.3
Q ss_pred CCCccEEEEec--CCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceec---
Q 003091 57 DPQTTNLYVGN--LSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVY--- 131 (848)
Q Consensus 57 d~~~t~LfVgN--Lp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~--- 131 (848)
+.++.+||||| |+..+|+++|+++|++||.|.+|.|. .++|||||+|.+.++|++|++.|||+.+.
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~---------~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~ 85 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMP---------PNKPYSFARYRTTEESKRAYVTLNGKEVVDDL 85 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECC---------TTCSEEEEEESSHHHHHHHHHHTTTCEEECTT
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEe---------CCCCEEEEEECCHHHHHHHHHHhCCCcccccc
Confidence 45678999999 57899999999999999999998775 15799999999999999999999999883
Q ss_pred Ce--EEEEEeccCCC
Q 003091 132 EY--ELKIGWGKSVA 144 (848)
Q Consensus 132 G~--~L~V~~ak~~~ 144 (848)
|+ .|+|.|+...+
T Consensus 86 g~~~~ly~~~~~~~~ 100 (345)
T 3tht_A 86 GQKITLYLNFVEKVQ 100 (345)
T ss_dssp SCEEECEEEECSSEE
T ss_pred CCceEEEEEEeeccc
Confidence 44 68999986553
No 211
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.10 E-value=1.5e-10 Score=122.62 Aligned_cols=81 Identities=23% Similarity=0.410 Sum_probs=72.5
Q ss_pred CccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCC-ceec---CeE
Q 003091 59 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQG-VVVY---EYE 134 (848)
Q Consensus 59 ~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG-~~i~---G~~ 134 (848)
.+++|||+|||+.+|+++|..+|++||.|.+|+|+. + .+|+++|||||+|.+.++|.+|+..||| ..+. |++
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~---~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~ 170 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVV---D-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRP 170 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE---E-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCB
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeee---C-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCce
Confidence 367999999999999999999999999999999984 5 5888999999999999999999999955 4444 999
Q ss_pred EEEEeccCC
Q 003091 135 LKIGWGKSV 143 (848)
Q Consensus 135 L~V~~ak~~ 143 (848)
|.|.|+...
T Consensus 171 i~v~~~~~~ 179 (261)
T 3sde_A 171 VIVEPMEQF 179 (261)
T ss_dssp CEEEECCCE
T ss_pred EEEeecccc
Confidence 999998864
No 212
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.10 E-value=1.3e-10 Score=124.53 Aligned_cols=82 Identities=11% Similarity=0.239 Sum_probs=70.8
Q ss_pred CccEEEEecCCCCCCHHHHHHHhccCC-CeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEE
Q 003091 59 QTTNLYVGNLSPQVDENFLLRTFGRFG-PIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 137 (848)
Q Consensus 59 ~~t~LfVgNLp~~vte~~L~~~F~~fG-~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V 137 (848)
..++|||+|||+.+++++|..+|++|| .|.+|+|+. +.. |.++|||||.|.+.++|.+|+..|||..|+|+.|.|
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~---~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 191 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPS---LRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVT 191 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-----------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEe---CCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 468999999999999999999999999 999999984 332 678999999999999999999999999999999999
Q ss_pred EeccCCC
Q 003091 138 GWGKSVA 144 (848)
Q Consensus 138 ~~ak~~~ 144 (848)
.|+.+..
T Consensus 192 ~~a~~~~ 198 (292)
T 2ghp_A 192 KVSNPLE 198 (292)
T ss_dssp EECCCC-
T ss_pred EECCCCc
Confidence 9987543
No 213
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=6e-10 Score=101.31 Aligned_cols=65 Identities=18% Similarity=0.370 Sum_probs=58.3
Q ss_pred CCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEeccCCC
Q 003091 70 PQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVA 144 (848)
Q Consensus 70 ~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V~~ak~~~ 144 (848)
..+++++|+++|++||.|..|.|+ ++++|||||+|.+.++|+.|+..++| +.|++|+|.|++..+
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~--------~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS--------SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQP 91 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE--------SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc--------cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCC
Confidence 568999999999999999999998 26789999999999999999998665 579999999988653
No 214
>3clj_A Protein NRD1; CTD-interacting domain, nucleus, phosphoprotein, RNA polymer binding protein, RNA binding protein; 2.10A {Saccharomyces cerevisiae}
Probab=99.08 E-value=4.2e-11 Score=116.64 Aligned_cols=128 Identities=17% Similarity=0.343 Sum_probs=102.2
Q ss_pred HHHHHHHHHhc-----ccCHHHHHHHHHHHHhccccHHHHHHHHHHHhcccCCCcccchheeeeehhhhccCCCC-----
Q 003091 323 RDEFEDMLRAL-----TLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAP----- 392 (848)
Q Consensus 323 ~~~l~~lL~~L-----t~tr~sI~~~~~w~l~h~~~a~eiv~~l~~~l~~~~~~~~~KL~~LYLinDIL~ns~~~----- 392 (848)
.++|+..|..| ..++..|.....||++|......||+.|.+.+. .+|...||..||||..|+.|+...
T Consensus 3 v~ef~~~L~sL~~lkp~iS~skI~~LT~~A~~nv~~~~~iv~~l~~~ik--k~p~~hKL~~LYVvDSIvR~~~~~~~k~g 80 (157)
T 3clj_A 3 FQNFVATLESFKDLKSGISGSRIKKLTTYALDHIDIESKIISLIIDYSR--LCPDSHKLGSLYIIDSIGRAYLDETRSNS 80 (157)
T ss_dssp HHHHHHHHHGGGGCSSSCCHHHHHHHHHHHHHTGGGHHHHHHHHHHHHH--HSCGGGHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH--hCCCcceeeeeeehHHHHHHHHHHHHhcC
Confidence 67899999988 468999999999999999999999999999885 467899999999999999997521
Q ss_pred C-CCc--cchH---HHHHHhhHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHhhccCccCcHHHHHHHHHHhc
Q 003091 393 V-KNA--SAYR---TKFEATLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWSDWFLFSDAYVNGLRATFL 460 (848)
Q Consensus 393 ~-~~a--~~yr---~~fe~~Lp~if~~l~~~~~~~~~r~~ae~~k~kV~~vL~iWe~~~vf~~~~i~~L~~~f~ 460 (848)
. .++ ..|. ..|...++.+|.. +|..+ .++.|.||.+||++|+...+||+++|+.|++.+.
T Consensus 81 ~~~~a~~gt~a~~v~~~~e~i~~l~~~---~~~~~-----~~~~k~Ki~klldiW~k~~~Fp~e~i~~i~~~~~ 146 (157)
T 3clj_A 81 NSSSNKPGTCAHAINTLGEVIQELLSD---AIAKS-----NQDHKEKIRMLLDIWDRSGLFQKSYLNAIRSKCF 146 (157)
T ss_dssp C----STTSHHHHHHHHHHHHHHHHHH---HHHHS-----CHHHHHHHHHHHHHHHHHTTTTTSCCTTTTSHHH
T ss_pred CccCCCCccHHHHHHHHHHHHHHHHHH---HHHcC-----CHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHhh
Confidence 1 011 2353 3467777776643 33322 3688999999999999999999999998887765
No 215
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.04 E-value=4.1e-10 Score=105.52 Aligned_cols=83 Identities=19% Similarity=0.177 Sum_probs=69.5
Q ss_pred CccEEEEecCCC--C---CCHHHHHHHhccCCCeeEEEEeCCCc-ccccCCcccEEEEEeCCHHHHHHHHHHcCCceecC
Q 003091 59 QTTNLYVGNLSP--Q---VDENFLLRTFGRFGPIASVKIMWPRT-EEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYE 132 (848)
Q Consensus 59 ~~t~LfVgNLp~--~---vte~~L~~~F~~fG~I~svkI~~pr~-d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G 132 (848)
+++.|+|.|+-. . --+++|++.|++||.|.+|+|+.++. ...+++++||+||+|.+.++|.+|+..|||..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 467899999842 1 23689999999999999999996431 12256788999999999999999999999999999
Q ss_pred eEEEEEecc
Q 003091 133 YELKIGWGK 141 (848)
Q Consensus 133 ~~L~V~~ak 141 (848)
+.|.|.|+.
T Consensus 99 R~i~v~~~~ 107 (118)
T 3ue2_A 99 RKVVAEVYD 107 (118)
T ss_dssp EECEEEEEC
T ss_pred cEEEEEEcC
Confidence 999999964
No 216
>2e62_A Protein AT5G25060; CWF21 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Arabidopsis thaliana}
Probab=98.93 E-value=2.6e-09 Score=86.00 Aligned_cols=56 Identities=68% Similarity=1.066 Sum_probs=53.2
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHhhhhhhhcCCC
Q 003091 690 PDSGMNEEQRQKLRRLEVSLIEYRESLEERGIKSSEEIEKKVAIHRKRLESEYGLA 745 (848)
Q Consensus 690 ~~~~~~~~~r~kl~~~~~~~~~~r~~~ee~~~~~~ee~~~~~~~~r~~~~~~~~~~ 745 (848)
.++.|+||+|+|||+||+++|+||++||++|.++.++++++++.+|+++..+||++
T Consensus 6 ~~~~~~ee~r~klR~IEvk~me~rD~LEeqG~~~~~eI~~kV~~~RkkL~~~~~~~ 61 (61)
T 2e62_A 6 SGNGMDEEQRQKRRRIEVALIEYRETLEEQGMKNPEEIERKVEINRKRLEVDYGLS 61 (61)
T ss_dssp CCSSTHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHTTCC
T ss_pred cccccCHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhcCCC
Confidence 56799999999999999999999999999999999999999999999999999874
No 217
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.84 E-value=1.2e-08 Score=94.98 Aligned_cols=77 Identities=10% Similarity=0.094 Sum_probs=64.0
Q ss_pred CccEEEEecCCCCCC----------HHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCc
Q 003091 59 QTTNLYVGNLSPQVD----------ENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGV 128 (848)
Q Consensus 59 ~~t~LfVgNLp~~vt----------e~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~ 128 (848)
+++.|.|.|+=..-. +++|++.|++||.|.+|.|.. + ..+|||||.|.+.++|.+|+..|||.
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~---~----~~~G~~fV~f~~~e~A~~Ai~~lnG~ 78 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDK---N----SAQGNVYVKCPSIAAAIAAVNALHGR 78 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECT---T----CTTCCEEEECSSHHHHHHHHHHHTTC
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEec---C----CCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 356788888643222 357899999999999999973 2 25899999999999999999999999
Q ss_pred eecCeEEEEEeccC
Q 003091 129 VVYEYELKIGWGKS 142 (848)
Q Consensus 129 ~i~G~~L~V~~ak~ 142 (848)
.++|+.|+|.|+..
T Consensus 79 ~f~GR~i~v~~~~~ 92 (114)
T 3s6e_A 79 WFAGKMITAAYVPL 92 (114)
T ss_dssp EETTEECEEEEECH
T ss_pred EECCEEEEEEEEcH
Confidence 99999999999753
No 218
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.71 E-value=2.8e-08 Score=87.94 Aligned_cols=74 Identities=15% Similarity=0.265 Sum_probs=61.8
Q ss_pred CCccEEEEecCCC----CCCH----HHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCce
Q 003091 58 PQTTNLYVGNLSP----QVDE----NFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVV 129 (848)
Q Consensus 58 ~~~t~LfVgNLp~----~vte----~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~ 129 (848)
|+..||+|..++. +.-. .+|...|++||.|..|+|+. + .+||+|.+.++|.+|+. |||..
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~---d--------~~fVtF~d~~sAlaAi~-mnG~~ 72 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVE---D--------KMWVTFLEGSSALNVLS-LNGKE 72 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECS---S--------SEEEEESSHHHHHHGGG-GTTCE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEec---C--------CEEEEECChHHHHHHHh-cCCeE
Confidence 4456888887762 3333 57899999999999999994 2 28999999999999998 99999
Q ss_pred ecCeEEEEEeccCC
Q 003091 130 VYEYELKIGWGKSV 143 (848)
Q Consensus 130 i~G~~L~V~~ak~~ 143 (848)
++|+.|+|.++++.
T Consensus 73 v~Gr~LkV~lkt~d 86 (91)
T 2dnr_A 73 LLNRTITIALKSPS 86 (91)
T ss_dssp ETTEEEEEEECCCS
T ss_pred eCCeEEEEEeCCCC
Confidence 99999999998754
No 219
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.67 E-value=6.2e-08 Score=90.79 Aligned_cols=73 Identities=11% Similarity=0.075 Sum_probs=64.5
Q ss_pred CCccEEEEecCCCC-CCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCC-HHHHHHHHHHcC--CceecCe
Q 003091 58 PQTTNLYVGNLSPQ-VDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMN-RADGQAAKDEMQ--GVVVYEY 133 (848)
Q Consensus 58 ~~~t~LfVgNLp~~-vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~-~~~A~~Ai~~ln--G~~i~G~ 133 (848)
+.++.|||+||+.. ++.++|+++|++||.|..|.++. ....|||.|.+ ..+|..|+..|| |..|+|.
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~---------g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~ 86 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVR---------GAKEGIILFKEKAKEALGKAKDANNGNLQLRNK 86 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCT---------TCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSS
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEec---------CCCEEEEEECCChHHHHHHHHHhhcCCcEEeCc
Confidence 56899999999999 99999999999999999999983 23469999999 899999999995 7889998
Q ss_pred EEEEEe
Q 003091 134 ELKIGW 139 (848)
Q Consensus 134 ~L~V~~ 139 (848)
.+++..
T Consensus 87 ~~~~ev 92 (121)
T 1owx_A 87 EVTWEV 92 (121)
T ss_dssp SEEEEE
T ss_pred EEEEEE
Confidence 887754
No 220
>1x4p_A Putative splicing factor, arginine/serine-rich 14; SURP domain, SFRS14 protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.217.1.1
Probab=98.63 E-value=1.8e-09 Score=87.32 Aligned_cols=55 Identities=24% Similarity=0.328 Sum_probs=48.4
Q ss_pred hhhhhHHHHHHHHHhhccHHHHHHHHHhcCCCCcccccccCCCCCcceeeEEeeeec
Q 003091 205 RHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFA 261 (848)
Q Consensus 205 ~~~~~~Id~~a~~V~~~G~~FE~~l~~~e~~np~f~FL~d~~s~~h~YYrwkl~s~~ 261 (848)
+.++.+|++||.||+..|++-+++.- .++||.|.||||.+|.+|.||+.||-.+.
T Consensus 5 ~~~~~~ieKLa~fVaeGgpe~~~~a~--~k~nPaf~FL~D~~S~eykYYr~KlaE~r 59 (66)
T 1x4p_A 5 SSGVGTIDQLVKRVIEGSLSPKERTL--LKEDPAYWFLSDENSLEYKYYKLKLAEMQ 59 (66)
T ss_dssp CCSSHHHHHHHHHHHHTCSCHHHHHH--HHHSGGGCTTTCCSSSHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHccCCcHHHHHH--cccCCceeeeeCCCcHHHHHHHHHHHHHH
Confidence 45788999999999999999776655 56799999999999999999999997654
No 221
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.42 E-value=4.5e-07 Score=80.70 Aligned_cols=71 Identities=27% Similarity=0.386 Sum_probs=60.1
Q ss_pred CCCccEEEEecCCCC------CCH---HHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCC
Q 003091 57 DPQTTNLYVGNLSPQ------VDE---NFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQG 127 (848)
Q Consensus 57 d~~~t~LfVgNLp~~------vte---~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG 127 (848)
.|+..||+|..++.. ..+ .+|.+.|++||.|..|+|.. +. +||+|.+.++|.+||. |||
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~---d~--------~fVtF~d~~sAl~AI~-ldG 79 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQ---GQ--------MLVTFADSHSALSVLD-VDG 79 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEET---TE--------EEEECSCSHHHHHHHH-GGG
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEec---Cc--------EEEEEcChHHHHHHHh-cCC
Confidence 345679999988743 232 46889999999999999994 22 9999999999999998 999
Q ss_pred ceecCeEEEEEe
Q 003091 128 VVVYEYELKIGW 139 (848)
Q Consensus 128 ~~i~G~~L~V~~ 139 (848)
..++|+.|+|.+
T Consensus 80 ~~v~Gr~L~V~~ 91 (95)
T 1ufw_A 80 MKVKGRAVKISG 91 (95)
T ss_dssp SEETTEEEEEEC
T ss_pred eeeCCeEEEEec
Confidence 999999999987
No 222
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.32 E-value=6.1e-07 Score=92.31 Aligned_cols=70 Identities=20% Similarity=0.148 Sum_probs=61.4
Q ss_pred CCHHHHHHHhccCCCeeEEEEeCCC-cccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEecc
Q 003091 72 VDENFLLRTFGRFGPIASVKIMWPR-TEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGK 141 (848)
Q Consensus 72 vte~~L~~~F~~fG~I~svkI~~pr-~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L~V~~ak 141 (848)
-.+++|.+.|++||.|.+|+|..+. .+..+++++|++||+|.+.++|.+|+..|||..++|+.|.+.|..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 3467899999999999999998543 234567899999999999999999999999999999999999853
No 223
>4dgw_B PRE-mRNA-splicing factor PRP21; zinc finger; 3.11A {Saccharomyces cerevisiae}
Probab=97.93 E-value=1.7e-06 Score=83.62 Aligned_cols=51 Identities=14% Similarity=0.165 Sum_probs=46.6
Q ss_pred hhhHHHHHHHHHhhccHHHHHHHHHhcCCCCcccccccCCCCCcceeeEEeeee
Q 003091 207 LRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSF 260 (848)
Q Consensus 207 ~~~~Id~~a~~V~~~G~~FE~~l~~~e~~np~f~FL~d~~s~~h~YYrwkl~s~ 260 (848)
-..||..||.|||++|. |+..|++++. ||+|.||. +.++.|.||...+.++
T Consensus 7 dldIIklTA~FvArnG~-F~~~L~~re~-npqF~FL~-p~h~l~~~F~~lv~qY 57 (152)
T 4dgw_B 7 DMEVIKLTARYYAKDKS-IVEQMISKDG-EARLNFMN-SSHPLHKTFTDFVAQY 57 (152)
T ss_dssp HHHHHHHHHHHHTTTSS-HHHHHHHHTC-CTTSGGGS-TTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHheecCH-HHHHHHHhcc-CcccccCC-CCCccHHHHHHHHHHH
Confidence 35799999999999999 9999999999 99999998 8999999999888543
No 224
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.75 E-value=0.00011 Score=66.44 Aligned_cols=77 Identities=12% Similarity=0.161 Sum_probs=64.9
Q ss_pred ccEEEEecCCCCC-CH----HHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeE
Q 003091 60 TTNLYVGNLSPQV-DE----NFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYE 134 (848)
Q Consensus 60 ~t~LfVgNLp~~v-te----~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~ 134 (848)
.++|+|.||+..| .. +.++.+|..|+++.+...+ ++-.-..|.|.+.++|.+|...|+|..++|++
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~l---------kSFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~ 75 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYF---------KSFKRVRINFSNPLSAADARLRLHKTEFLGKE 75 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEE---------TTTTEEEEECSSTTHHHHHHHTSTTSEETTEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeec---------CcceEEEEEeCChHHHHHHHHHhccceecCce
Confidence 4689999998855 22 5678999999999998777 24345689999999999999999999999999
Q ss_pred EEEEeccCCCC
Q 003091 135 LKIGWGKSVAL 145 (848)
Q Consensus 135 L~V~~ak~~~~ 145 (848)
|+|-||.+..+
T Consensus 76 ~r~YFgq~~~~ 86 (104)
T 1wey_A 76 MKLYFAQTLHI 86 (104)
T ss_dssp CEEECCCCSSC
T ss_pred eEEEecCCCCC
Confidence 99999995544
No 225
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.56 E-value=0.00025 Score=64.47 Aligned_cols=70 Identities=13% Similarity=0.103 Sum_probs=63.9
Q ss_pred ccEEEEecCCCCCCHHHHHHHhccC-----CCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeE
Q 003091 60 TTNLYVGNLSPQVDENFLLRTFGRF-----GPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYE 134 (848)
Q Consensus 60 ~t~LfVgNLp~~vte~~L~~~F~~f-----G~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~ 134 (848)
..+|-+-|||..|+...++.+...| |.|..|.+.. .-+-|+|.|.+...|.+|.-+|+|..|.|+.
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~p---------DH~GAivef~d~~~AgKasLaL~G~ef~gr~ 91 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVS---------DFNGAIIIFRDSKFAAKMLMILNGSQFQGKV 91 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEET---------TTTEEEEECSCHHHHHHHHHHHSSEEETTEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEec---------CCCceEEEEccchhhHHHHhhcCCeeecCeE
Confidence 4578889999999999999999999 9999998883 3367999999999999999999999999999
Q ss_pred EEEE
Q 003091 135 LKIG 138 (848)
Q Consensus 135 L~V~ 138 (848)
|+++
T Consensus 92 Lr~g 95 (117)
T 2l9w_A 92 IRSG 95 (117)
T ss_dssp EEEE
T ss_pred EEec
Confidence 9996
No 226
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=95.61 E-value=0.077 Score=46.92 Aligned_cols=83 Identities=12% Similarity=0.182 Sum_probs=60.5
Q ss_pred cEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceec---C--eEE
Q 003091 61 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVY---E--YEL 135 (848)
Q Consensus 61 t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~---G--~~L 135 (848)
++|-|.+||+++|++++.+.++..+.+.....+. .........-.-|+|.|.+.+++..-...++|..+. | .+-
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~-G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a 80 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFS-NDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPA 80 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEE-SCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeC-CccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeee
Confidence 5799999999999999999999998776655552 111111122356899999999999999999999872 3 233
Q ss_pred EEEeccCCC
Q 003091 136 KIGWGKSVA 144 (848)
Q Consensus 136 ~V~~ak~~~ 144 (848)
.|.||-...
T Consensus 81 ~VE~AP~qk 89 (91)
T 1uw4_A 81 IVEFAPFQK 89 (91)
T ss_dssp EEEECSSCC
T ss_pred EEEEcCCCc
Confidence 566664443
No 227
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.92 E-value=0.13 Score=46.42 Aligned_cols=68 Identities=21% Similarity=0.271 Sum_probs=55.7
Q ss_pred CccEEEEecCCCCCCHHHHHHHhcc-----CCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCe
Q 003091 59 QTTNLYVGNLSPQVDENFLLRTFGR-----FGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEY 133 (848)
Q Consensus 59 ~~t~LfVgNLp~~vte~~L~~~F~~-----fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~ 133 (848)
...+|.|.|||+.+.++.|.-+|.. -|.|.+|... . +-|+|+|.+...|++.+.. ....|+|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~----------~-~~AvItF~d~~va~rVL~k-~~H~L~~~ 74 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRL----------G-CGGVLTFREPADAERVLAQ-ADHELHGA 74 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEE----------T-TEEEEEESSHHHHHHHHTC-SCCBSSSS
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEc----------C-CcEEEEEcChHHHHHHhcC-CcceecCe
Confidence 4679999999999999999999976 2578888776 1 6789999999999988743 24678888
Q ss_pred EEEEE
Q 003091 134 ELKIG 138 (848)
Q Consensus 134 ~L~V~ 138 (848)
+|.|.
T Consensus 75 ~LsV~ 79 (104)
T 2dhx_A 75 QLSLR 79 (104)
T ss_dssp BCEEE
T ss_pred EEEEE
Confidence 88884
No 228
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=94.86 E-value=0.084 Score=47.08 Aligned_cols=58 Identities=17% Similarity=0.304 Sum_probs=45.9
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcC
Q 003091 58 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQ 126 (848)
Q Consensus 58 ~~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~ln 126 (848)
+....||+-+.|+.+...+|.++|+.||.| .|+.+ .-..|||.|.+++.|..|+..+.
T Consensus 13 p~r~HVf~l~FP~ewKt~DI~~lFs~fggv-~I~Wi----------dDTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 13 PKRDHVLHVTFPKEWKTSDLYQLFSAFGNI-QISWI----------DDTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCCCSEEEEECCTTCCHHHHHHHHTTTCSC-CCEEE----------ETTEEEEECSCHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCChhhhhHHHHHHhhccCCE-EEEEE----------cCCeEEEEecCHHHHHHHHHhcc
Confidence 344455555999999999999999999943 45555 23579999999999999998764
No 229
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=94.52 E-value=0.033 Score=49.75 Aligned_cols=54 Identities=17% Similarity=0.353 Sum_probs=43.3
Q ss_pred EEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcC
Q 003091 62 NLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQ 126 (848)
Q Consensus 62 ~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~ln 126 (848)
.||+-+.|+.+.-.+|..+|+.|| .|.|.| . .-..|||.|.+++.|..|+..+.
T Consensus 7 HV~~l~FP~ewKt~Di~~lFs~fg---gv~I~W--i------dDTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHVTFPKEWKTSDLYQLFSAFG---NIQISW--I------DDTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEECCTTCCHHHHHHHTTTSE---EEEEEE--E------ETTEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEEeCChhhhhHHHHHHHhccC---CEEEEE--E------cCCeEEEEecCHHHHHHHHHhcc
Confidence 444449999999999999999999 344444 1 23679999999999999998764
No 230
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=94.31 E-value=0.13 Score=47.69 Aligned_cols=70 Identities=14% Similarity=0.210 Sum_probs=55.6
Q ss_pred CccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecC-eEEEE
Q 003091 59 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYE-YELKI 137 (848)
Q Consensus 59 ~~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G-~~L~V 137 (848)
..+-|.|-+.|+.. -..+...|++||.|.+.... ...++-.|.|.++.+|++|+. .||..|+| .-|-|
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~---------~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV 91 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS---------NTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGV 91 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC---------SSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEE
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC---------CCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEE
Confidence 45788899999885 55666789999999987652 256899999999999999995 69999985 44555
Q ss_pred Ee
Q 003091 138 GW 139 (848)
Q Consensus 138 ~~ 139 (848)
.+
T Consensus 92 ~p 93 (119)
T 1wwh_A 92 KP 93 (119)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 231
>1h1j_S THO1 protein; SAP domain, DNA binding; NMR {Saccharomyces cerevisiae} SCOP: a.140.2.1 PDB: 2wqg_A
Probab=93.45 E-value=0.098 Score=41.16 Aligned_cols=40 Identities=23% Similarity=0.351 Sum_probs=35.5
Q ss_pred HhhcCChHHHHHHHHHcCccccCChHHHHHHHHhHHHHhh
Q 003091 511 ELMNLPLSELERRCRHNGLSLVGGREMMVARLLSLEDAEK 550 (848)
Q Consensus 511 ~~~~~~~~~l~~~c~~~gl~~~~~~~~~~~rL~~~~~~~~ 550 (848)
.|.++-..+|...|+.+||...|.+..||+||..+.+.+.
T Consensus 4 ~~~kltV~eLK~~Lk~RGL~~~G~KadLieRL~~~~~~~~ 43 (51)
T 1h1j_S 4 DYSSLTVVQLKDLLTKRNLSVGGLKNELVQRLIKDDEESK 43 (51)
T ss_dssp SGGGCCHHHHHHHHHHTTCCCCSSHHHHHHHHHHHHHHSC
T ss_pred hHHHCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHhcc
Confidence 4678889999999999999999999999999988776544
No 232
>2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A
Probab=93.29 E-value=0.098 Score=44.28 Aligned_cols=41 Identities=20% Similarity=0.391 Sum_probs=36.5
Q ss_pred HHhhcCChHHHHHHHHHcCccccCChHHHHHHHHhHHHHhh
Q 003091 510 KELMNLPLSELERRCRHNGLSLVGGREMMVARLLSLEDAEK 550 (848)
Q Consensus 510 ~~~~~~~~~~l~~~c~~~gl~~~~~~~~~~~rL~~~~~~~~ 550 (848)
..|.++-..+|...|+.+||...|.+..||+||..+.+.+.
T Consensus 24 ~~l~klkVaeLK~eLk~RGL~~sG~KaeLIeRL~~~~~~~~ 64 (75)
T 2kvu_A 24 ANLDDMKVAELKQELKLRSLPVSGTKTELIERLRAYQDQIS 64 (75)
T ss_dssp TTTTTSCHHHHHHHHHHTTCCCCSCHHHHHHHHHHHHHTTS
T ss_pred HHHHHCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHccC
Confidence 46778899999999999999999999999999998876653
No 233
>2do1_A Nuclear protein HCC-1; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=91.35 E-value=0.21 Score=39.93 Aligned_cols=39 Identities=31% Similarity=0.514 Sum_probs=34.1
Q ss_pred HhhcCChHHHHHHHHHcCccccCChHHHHHHHHhHHHHh
Q 003091 511 ELMNLPLSELERRCRHNGLSLVGGREMMVARLLSLEDAE 549 (848)
Q Consensus 511 ~~~~~~~~~l~~~c~~~gl~~~~~~~~~~~rL~~~~~~~ 549 (848)
.|.+|-..+|...|+.+||...|.+..||+||..+-.-+
T Consensus 9 ~l~klkV~eLK~~L~~rGL~~~G~KaeLieRL~~~l~~~ 47 (55)
T 2do1_A 9 ELHKLKLAELKQECLARGLETKGIKQDLIHRLQAYLEEH 47 (55)
T ss_dssp CTTTSCHHHHHHHHHHHTCCCCSCHHHHHHHHHHHHHHT
T ss_pred CHHHCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcC
Confidence 366788899999999999999999999999998775544
No 234
>1zrj_A E1B-55KDA-associated protein 5 isoform C; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=90.85 E-value=0.3 Score=38.26 Aligned_cols=36 Identities=22% Similarity=0.341 Sum_probs=32.4
Q ss_pred HhhcCChHHHHHHHHHcCccccCChHHHHHHHHhHH
Q 003091 511 ELMNLPLSELERRCRHNGLSLVGGREMMVARLLSLE 546 (848)
Q Consensus 511 ~~~~~~~~~l~~~c~~~gl~~~~~~~~~~~rL~~~~ 546 (848)
.|.+|-..+|...|+.+||...|.+..||+||..+.
T Consensus 9 ~~~klkV~eLK~eLk~RgL~~~G~Ka~Li~RL~~~~ 44 (50)
T 1zrj_A 9 DVRRLKVNELREELQRRGLDTRGLKAELAERLQAAL 44 (50)
T ss_dssp CGGGSCHHHHHHHHHHTTCCCCSCHHHHHHHHHHHH
T ss_pred CHHHCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHHH
Confidence 466788999999999999999999999999998654
No 235
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=89.61 E-value=0.72 Score=41.10 Aligned_cols=80 Identities=11% Similarity=0.186 Sum_probs=54.6
Q ss_pred ccEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceec---C--eE
Q 003091 60 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVY---E--YE 134 (848)
Q Consensus 60 ~t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~---G--~~ 134 (848)
+-+|-|..|||++||+++.+.++..-.+.....+ |.........-.-|+|.|.+.++...-...++|..+- | .+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv-~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~ 87 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFF-AADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYP 87 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCC-CCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEe-CCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEee
Confidence 4579999999999999999888876554332222 1111111112246899999999999999999999872 2 33
Q ss_pred EEEEec
Q 003091 135 LKIGWG 140 (848)
Q Consensus 135 L~V~~a 140 (848)
-.|.||
T Consensus 88 a~VE~A 93 (97)
T 2l08_A 88 AVVEFA 93 (97)
T ss_dssp EEEEEC
T ss_pred eEEEec
Confidence 445554
No 236
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=88.79 E-value=0.17 Score=48.12 Aligned_cols=41 Identities=7% Similarity=-0.041 Sum_probs=36.8
Q ss_pred CCcccEEEEEeCCHHHHHHHHHHc-CCceecCeEEEEEeccCC
Q 003091 102 RRQRNCGFVAFMNRADGQAAKDEM-QGVVVYEYELKIGWGKSV 143 (848)
Q Consensus 102 g~~rg~gFV~F~~~~~A~~Ai~~l-nG~~i~G~~L~V~~ak~~ 143 (848)
...+|+++|+|.+.++|++|+..| ||..++| .|.+.++...
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~ 51 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKT 51 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTE
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCc
Confidence 356799999999999999999999 9999999 9999987643
No 237
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=88.29 E-value=0.4 Score=45.07 Aligned_cols=79 Identities=14% Similarity=0.082 Sum_probs=52.5
Q ss_pred ccEEEEecCCCCCCHHHHHHHhccCCCeeEE-EEeCCC---------cccccC-CcccEEEEEeCCHHHHHHHHHHcCCc
Q 003091 60 TTNLYVGNLSPQVDENFLLRTFGRFGPIASV-KIMWPR---------TEEERR-RQRNCGFVAFMNRADGQAAKDEMQGV 128 (848)
Q Consensus 60 ~t~LfVgNLp~~vte~~L~~~F~~fG~I~sv-kI~~pr---------~d~~tg-~~rg~gFV~F~~~~~A~~Ai~~lnG~ 128 (848)
.+-|.|-+.|+..+.. +...|++||.|..- .+..+. .....+ .+.++-.|+|.+..+|.+|+ ..||.
T Consensus 7 e~~VtVFGFp~~~~~~-VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL-~~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMANQ-VIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDAL-LENGA 84 (132)
T ss_dssp -CEEEEECCCGGGHHH-HHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHH-TTTTC
T ss_pred ceEEEEEecCHHHHHH-HHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHH-HhCCe
Confidence 3467777887766555 55679999998762 111000 000001 14578899999999999998 58999
Q ss_pred eecCeEEEEEec
Q 003091 129 VVYEYELKIGWG 140 (848)
Q Consensus 129 ~i~G~~L~V~~a 140 (848)
+|+|.-|-|.+.
T Consensus 85 ii~G~mIGV~Py 96 (132)
T 3p3d_A 85 VFNGVLLGVIPY 96 (132)
T ss_dssp EETTEECEEEEC
T ss_pred EeCcEEEEEEEC
Confidence 999986666554
No 238
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=86.74 E-value=0.33 Score=55.09 Aligned_cols=54 Identities=17% Similarity=0.273 Sum_probs=40.0
Q ss_pred cEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHH
Q 003091 61 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKD 123 (848)
Q Consensus 61 t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~ 123 (848)
.+|||. .|..+++.+|.+.|++||+|.++.+.. ....|+.|+|.+.+++..++.
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~--------~~g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYE--------SFGLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEEC--------SSSEEEEEECC---CCHHHHS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEc--------cCCeEEEEEeCCHHHHHHHHh
Confidence 589997 799999999999999999999987762 233799999999988886643
No 239
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=85.27 E-value=0.67 Score=44.06 Aligned_cols=37 Identities=5% Similarity=0.006 Sum_probs=29.0
Q ss_pred EEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCcee
Q 003091 89 SVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVV 130 (848)
Q Consensus 89 svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i 130 (848)
+++|+. +. .+.+|||||+|.+.++|++|+..+++...
T Consensus 2 ~~kl~l---n~--~~~~G~~fV~f~~~~~A~~al~~~~~~~~ 38 (158)
T 2kn4_A 2 QYKLIL---NG--KTLKGETTTEAVDAATAEKVFKQYANDNG 38 (158)
T ss_dssp EEEEEE---EC--SSCEEEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred cEEEEe---cC--ccccchhHHHHHHHHhHHHHHHhhcccCC
Confidence 456663 32 35889999999999999999999887543
No 240
>2rnn_A E3 SUMO-protein ligase SIZ1; SUMO ligase, DNA binding, sumoylation, metal-binding, nucLeu phosphoprotein, UBL conjugation pathway; NMR {Saccharomyces cerevisiae}
Probab=83.56 E-value=1.4 Score=40.33 Aligned_cols=41 Identities=20% Similarity=0.334 Sum_probs=36.2
Q ss_pred hhHHHhhcCChHHHHHHHHHcCccccCChHHHHHHHHhHHH
Q 003091 507 AAIKELMNLPLSELERRCRHNGLSLVGGREMMVARLLSLED 547 (848)
Q Consensus 507 ~~~~~~~~~~~~~l~~~c~~~gl~~~~~~~~~~~rL~~~~~ 547 (848)
.....+.+|-.++|...|+..||...|.+..|++||..|=+
T Consensus 32 ~~~~~l~kLtVaELK~~cr~~GL~~sGkKaeLi~RI~~yl~ 72 (114)
T 2rnn_A 32 ETITLMELLKVSELKDICRSVSFPVSGRKAVLQDLIRNFLQ 72 (114)
T ss_dssp HHHHHHTTCCHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHcCCCcCCcHHHHHHHHHHHHH
Confidence 44557889999999999999999999999999999987643
No 241
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=64.35 E-value=12 Score=42.80 Aligned_cols=54 Identities=19% Similarity=0.263 Sum_probs=44.7
Q ss_pred cEEEEecCCCCCCHHHHHHHhccCCCeeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcC
Q 003091 61 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQ 126 (848)
Q Consensus 61 t~LfVgNLp~~vte~~L~~~F~~fG~I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~ln 126 (848)
..++|+ +|..+...+|.++|+.||. ..|+.+ ...+|||.|.+.+.|..++..+.
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~wi----------ddt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWI----------DDTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEEC----------SSSEEEEECSCHHHHHHHHHHHT
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEE----------cCCeEEEEECCHHHHHHHHHHHH
Confidence 356665 9999999999999999994 455555 34689999999999999999885
No 242
>1jjr_A KU70, thyroid autoantigen; DNA repair protein, protein-DNA interaction, solution structure, DNA binding protein; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=62.91 E-value=5.4 Score=38.33 Aligned_cols=37 Identities=19% Similarity=0.240 Sum_probs=33.7
Q ss_pred HHHhhcCChHHHHHHHHHcCccccCChHHHHHHHHhH
Q 003091 509 IKELMNLPLSELERRCRHNGLSLVGGREMMVARLLSL 545 (848)
Q Consensus 509 ~~~~~~~~~~~l~~~c~~~gl~~~~~~~~~~~rL~~~ 545 (848)
.-.|..+...+|..+|+..||...|.+..||+||..+
T Consensus 58 ~g~L~kltV~eLK~~l~~~gL~~~GkKadLI~Ri~~~ 94 (151)
T 1jjr_A 58 KGTLGKFTVPMLKEACRAYGLKSGLKKQELLEALTKH 94 (151)
T ss_dssp HTCTTSSCHHHHHHHHHHHTCCCCSSSHHHHHHHHHT
T ss_pred cCcHHhccHHHHHHHHHHcCCCCcccHHHHHHHHHHH
Confidence 3468889999999999999999999999999999866
No 243
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=35.03 E-value=8.1 Score=34.57 Aligned_cols=19 Identities=26% Similarity=0.464 Sum_probs=0.0
Q ss_pred CCccEEEEecCCCCCCHHH
Q 003091 58 PQTTNLYVGNLSPQVDENF 76 (848)
Q Consensus 58 ~~~t~LfVgNLp~~vte~~ 76 (848)
...++|||+|||+++|++.
T Consensus 95 ~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 95 KEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp -------------------
T ss_pred CCCCceEeCCCCCCccccc
Confidence 4567899999999999864
No 244
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=30.55 E-value=1.7e+02 Score=32.24 Aligned_cols=111 Identities=14% Similarity=0.207 Sum_probs=78.3
Q ss_pred CCCHHHHHHHHHHHHhcc------cCHHHHHHHHH-HHHhccccHHHHHHHHHHHhcccCCCcccchheeeeehhhhccC
Q 003091 317 TLTDSQRDEFEDMLRALT------LERSQIKEAMG-FALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNS 389 (848)
Q Consensus 317 ~L~~~~~~~l~~lL~~Lt------~tr~sI~~~~~-w~l~h~~~a~eiv~~l~~~l~~~~~~~~~KL~~LYLinDIL~ns 389 (848)
+|.++-+.=|...|-.|. .--..+..|+. |+-....-+..++..|+++- +.|...+.+..|..+.+||-.+
T Consensus 250 PLKeehk~Fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~vi~~LLk~W--P~tns~KevlFL~eleeiLe~~ 327 (392)
T 2jak_A 250 PLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALLKYW--PKTHSPKEVMFLNELEEILDVI 327 (392)
T ss_dssp SCCHHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCGGGHHHHHHHHHHSS--CSSCCTTHHHHHHHHHHHHHTC
T ss_pred CCcHHHHHHHHHHhHhhccCCcHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHhC--CCCCchHHHHHHHHHHHHHHhC
Confidence 566665555666666663 33456777765 44445555888888888776 4455678899999999999776
Q ss_pred CCCCCCccchHHHHHHhhHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHhhccCcc
Q 003091 390 SAPVKNASAYRTKFEATLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWSDWFL 446 (848)
Q Consensus 390 ~~~~~~a~~yr~~fe~~Lp~if~~l~~~~~~~~~r~~ae~~k~kV~~vL~iWe~~~v 446 (848)
. -..|.+++..+|..++.+..+.. -+-.++.|.+|..-.+
T Consensus 328 ~---------~~~f~~i~~~lF~~la~ci~S~h--------fqVAErAL~~wnNe~i 367 (392)
T 2jak_A 328 E---------PSEFVKIMEPLFRQLAKCVSSPH--------FQVAERALYYWNNEYI 367 (392)
T ss_dssp C---------HHHHHHHHHHHHHHHHHHHTCSS--------HHHHHHHHGGGGCHHH
T ss_pred C---------HHHHHHHHHHHHHHHHHHHcCCc--------HHHHHHHHHHhCcHHH
Confidence 4 44788899999988887776432 3455778999987543
No 245
>2do5_A Splicing factor 3B subunit 2; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.77 E-value=58 Score=25.18 Aligned_cols=34 Identities=35% Similarity=0.525 Sum_probs=24.1
Q ss_pred hHHHHHHHHHcCccccCChHHHHHHHHhHHHHhhhcc
Q 003091 517 LSELERRCRHNGLSLVGGREMMVARLLSLEDAEKQRG 553 (848)
Q Consensus 517 ~~~l~~~c~~~gl~~~~~~~~~~~rL~~~~~~~~~~~ 553 (848)
..+|.----..|-..+|++++||+||..| ..|++
T Consensus 13 ~~ELQaKLaE~GAPi~g~REElvdRLk~Y---~~QtG 46 (58)
T 2do5_A 13 AQELQAKLAEIGAPIQGNREELVERLQSY---TRQTG 46 (58)
T ss_dssp HHHHHHHHHHHTCCCCSCHHHHHHHHHHH---HHHHC
T ss_pred CHHHHHHHHHhCCcccccHHHHHHHHHHH---hhccc
Confidence 34555444457888899999999998765 44544
No 246
>2rno_A Putative DNA-binding protein; SUMO ligase, sumoylation, metal-BI zinc-finger, ligase; NMR {Oryza sativa subsp}
Probab=25.64 E-value=1.2e+02 Score=26.94 Aligned_cols=37 Identities=24% Similarity=0.392 Sum_probs=32.1
Q ss_pred HHhhcCChHHHHHHHHHcCccccCChHHHHHHHHhHH
Q 003091 510 KELMNLPLSELERRCRHNGLSLVGGREMMVARLLSLE 546 (848)
Q Consensus 510 ~~~~~~~~~~l~~~c~~~gl~~~~~~~~~~~rL~~~~ 546 (848)
.++.-....+|.-.--+.||+.+|.++.|++|.+.+=
T Consensus 15 ~kl~~frikelkdvl~~lgl~kqgkKqdL~Dril~ll 51 (110)
T 2rno_A 15 DKLAYFRIKELKDILNQLGLPKQGKKQDLIDRVLALL 51 (110)
T ss_dssp HHHHHSCHHHHHHHHHHHTCCSCCCHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHhCCcccCccHHHHHHHHHHc
Confidence 4566678899999999999999999999999997653
No 247
>1jjr_A KU70, thyroid autoantigen; DNA repair protein, protein-DNA interaction, solution structure, DNA binding protein; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=23.41 E-value=17 Score=34.84 Aligned_cols=35 Identities=20% Similarity=0.284 Sum_probs=0.0
Q ss_pred HhhcCChHHHHHHHHHcCccccCChHHHHHHHHhH
Q 003091 511 ELMNLPLSELERRCRHNGLSLVGGREMMVARLLSL 545 (848)
Q Consensus 511 ~~~~~~~~~l~~~c~~~gl~~~~~~~~~~~rL~~~ 545 (848)
.|.++...+|.-+|+..||...|.+..||+||..+
T Consensus 114 ~l~klTV~~Lk~~l~~~gl~~~GkKaeLieRi~~~ 148 (151)
T 1jjr_A 114 TLGKFTVPMLKEACRAYGLKSGLKKQELLEALTKH 148 (151)
T ss_dssp -----------------------------------
T ss_pred ccccccHHHHHHHHHHcCCCCCCcHHHHHHHHHHH
Confidence 45667789999999999999999999999999654
No 248
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=23.25 E-value=1.2e+02 Score=24.79 Aligned_cols=68 Identities=19% Similarity=0.328 Sum_probs=41.8
Q ss_pred EEEEec-CCCCCCHHHHHHHhccCCC-----eeEEEEeCCCcccccCCcccEEEEEeCCHHHHHHHHHHcCCceecCeEE
Q 003091 62 NLYVGN-LSPQVDENFLLRTFGRFGP-----IASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYEL 135 (848)
Q Consensus 62 ~LfVgN-Lp~~vte~~L~~~F~~fG~-----I~svkI~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~i~G~~L 135 (848)
+|||+. --..+...+|..++..-+. |-.|.|. -.|.||+-. ...|..++..|++..+.|+.+
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~-----------d~~s~v~v~-~~~~~~~~~~l~~~~i~g~~~ 69 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIM-----------DNASYVEIL-NGKGPHVLKVMKNTTVKGKQL 69 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEEC-----------SSCEEEEEC-TTCHHHHHHHHTTCCC---CC
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEe-----------CCcEEEEEC-HHHHHHHHHHhccccCcCceE
Confidence 455531 1235666677776664443 5567776 257899886 456788999999999999999
Q ss_pred EEEecc
Q 003091 136 KIGWGK 141 (848)
Q Consensus 136 ~V~~ak 141 (848)
+|..++
T Consensus 70 ~v~~~~ 75 (76)
T 2g0c_A 70 KVNKAN 75 (76)
T ss_dssp CEEECC
T ss_pred EEEECC
Confidence 887654
No 249
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=23.12 E-value=1.4e+02 Score=28.81 Aligned_cols=84 Identities=12% Similarity=0.242 Sum_probs=49.6
Q ss_pred ccHHHHHHHHHHHhcccCCCcccchheeeeehhhhccCCCCCCCccchHHHHHHhhHHHHHHHHHHHhh-hhcccchHHH
Q 003091 352 DAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTKFEATLPDIMESFNDLYRS-ITGRITAEAL 430 (848)
Q Consensus 352 ~~a~eiv~~l~~~l~~~~~~~~~KL~~LYLinDIL~ns~~~~~~a~~yr~~fe~~Lp~if~~l~~~~~~-~~~r~~ae~~ 430 (848)
..+.+.+.+|.+.|... .....+.-|-|+.=++.||.. .|...+... ..+..|..+... ..|.......
T Consensus 46 ~~~k~A~ral~krl~~~--n~~vql~AL~LLd~~vkNCG~------~Fh~evas~--~Fl~eL~kl~~~k~~~~~~~~~V 115 (171)
T 1juq_A 46 EGPQIAVRLLAHKIQSP--QEWEALQALTVLEACMKNCGR------RFHNEVGKF--RFLNELIKVVSPKYLGDRVSEKV 115 (171)
T ss_dssp THHHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHHSHH------HHHHHHTSH--HHHHHHHHHHCCCCCCTTSCHHH
T ss_pred ccHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHcCH------HHHHHHhhH--HHHHHHHHHhccccCCCCCCHHH
Confidence 34778888888888643 344556677778778888852 233222211 111122222211 0123355799
Q ss_pred HHHHHHHHHhhccCc
Q 003091 431 KERVLKVLQVWSDWF 445 (848)
Q Consensus 431 k~kV~~vL~iWe~~~ 445 (848)
++||+.+|..|....
T Consensus 116 k~kil~li~~W~~~f 130 (171)
T 1juq_A 116 KTKVIELLYSWTMAL 130 (171)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHc
Confidence 999999999999753
No 250
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=22.53 E-value=2e+02 Score=28.96 Aligned_cols=82 Identities=16% Similarity=0.262 Sum_probs=49.5
Q ss_pred hccccHHHHHHHHHHHhcccCCCcccchheeeeehhhhccCCCCCCCccchHHHHHHhhHHHHHHHHHHHhhhhcccchH
Q 003091 349 DNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTKFEATLPDIMESFNDLYRSITGRITAE 428 (848)
Q Consensus 349 ~h~~~a~eiv~~l~~~l~~~~~~~~~KL~~LYLinDIL~ns~~~~~~a~~yr~~fe~~Lp~if~~l~~~~~~~~~r~~ae 428 (848)
.....+.+.+.+|.+.|... .....|.-|-|+.=.+.||..+....- -...|-..|..|+ ++-...
T Consensus 38 ~~~~~~k~a~ral~krl~~~--n~~v~l~aL~LLe~~vkNcG~~f~~ei-as~~fl~~l~~l~-----------~~~~~~ 103 (226)
T 3zyq_A 38 QGDTQAKYAVNSIKKKVNDK--NPHVALYALEVMESVVKNCGQTVHDEV-ANKQTMEELKDLL-----------KRQVEV 103 (226)
T ss_dssp TTSSCHHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHHHCHHHHHHH-SSHHHHHHHHHHH-----------HHCCCH
T ss_pred CCCccHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHhcchHHHHhh-ccHHHHHHHHHHh-----------ccCCCH
Confidence 33445889999999999643 344556667788788888863221100 0112222222222 122446
Q ss_pred HHHHHHHHHHHhhccC
Q 003091 429 ALKERVLKVLQVWSDW 444 (848)
Q Consensus 429 ~~k~kV~~vL~iWe~~ 444 (848)
..++||+.||..|...
T Consensus 104 ~Vk~kil~li~~W~~~ 119 (226)
T 3zyq_A 104 NVRNKILYLIQAWAHA 119 (226)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8999999999999864
No 251
>3skq_A Mitochondrial distribution and morphology protein; 14-3-3-like membrane protein, mitochondrial ribosome, respir chain biogenesis; 2.10A {Saccharomyces cerevisiae}
Probab=22.19 E-value=84 Score=32.48 Aligned_cols=40 Identities=30% Similarity=0.425 Sum_probs=32.5
Q ss_pred hhcCChHHHHHHHHHcCccccC-ChHHHHHHH-HhHHHHhhh
Q 003091 512 LMNLPLSELERRCRHNGLSLVG-GREMMVARL-LSLEDAEKQ 551 (848)
Q Consensus 512 ~~~~~~~~l~~~c~~~gl~~~~-~~~~~~~rL-~~~~~~~~~ 551 (848)
+.+|..++|..+|..+||-..| +.+.|...| .||+=.-.+
T Consensus 144 V~sLs~~ELr~AC~~RGm~~~gls~e~LR~~L~~WL~Lsl~~ 185 (249)
T 3skq_A 144 VESLSQEELYQACVSRGMKAYGVSKEDLVDNLKVWLELRLRQ 185 (249)
T ss_dssp GGGSCHHHHHHHHHHTTCCCTTCCHHHHHHHHHHHHHHHHTS
T ss_pred cccCCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHccC
Confidence 4578999999999999999886 888999999 666644443
No 252
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=20.41 E-value=2.7e+02 Score=26.09 Aligned_cols=84 Identities=11% Similarity=0.268 Sum_probs=50.6
Q ss_pred cccHHHHHHHHHHHhcccCCCcccchheeeeehhhhccCCCCCCCccchHHHHHHhhHHHHHHHHHHHhh-hhcccchHH
Q 003091 351 ADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTKFEATLPDIMESFNDLYRS-ITGRITAEA 429 (848)
Q Consensus 351 ~~~a~eiv~~l~~~l~~~~~~~~~KL~~LYLinDIL~ns~~~~~~a~~yr~~fe~~Lp~if~~l~~~~~~-~~~r~~ae~ 429 (848)
...+.+.+.+|.+.|... .....+.-|-|+.=++.||..+ |...+.. -..+..|..+... -.|.-....
T Consensus 33 ~~~~k~a~rai~krl~~~--n~~vql~AL~LLe~~vkNCG~~------fh~evas--~~Fl~eL~kl~~~k~~~~~~~~~ 102 (148)
T 1mhq_A 33 PNGPTHAPWLLAHKIQSP--QEKEALYALTVLEMCMNHCGEK------FHSEVAK--FRFLNELIKVLSPKYLGSWATGK 102 (148)
T ss_dssp SHHHHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHHSCHH------HHHHHTS--HHHHHHHHHTTCCSTTSCCCCHH
T ss_pred CccHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHcCHH------HHHHHhh--HHHHHHHHHHHccccCCCCCCHH
Confidence 345788889999998543 3555677788888888888622 3222211 1111112222111 112234579
Q ss_pred HHHHHHHHHHhhccC
Q 003091 430 LKERVLKVLQVWSDW 444 (848)
Q Consensus 430 ~k~kV~~vL~iWe~~ 444 (848)
.++||+.+|..|...
T Consensus 103 Vk~kil~li~~W~~~ 117 (148)
T 1mhq_A 103 VKGRVIEILFSWTVW 117 (148)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999975
Done!