Query 003093
Match_columns 848
No_of_seqs 528 out of 3938
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 13:03:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003093.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003093hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kg2_A Glutamate receptor 2; I 100.0 1.1E-92 3.7E-97 865.5 52.1 712 2-770 58-814 (823)
2 3o21_A Glutamate receptor 3; p 100.0 2.9E-42 9.8E-47 381.4 28.4 310 2-333 67-379 (389)
3 4gpa_A Glutamate receptor 4; P 100.0 4.2E-42 1.4E-46 381.4 28.7 316 2-338 67-382 (389)
4 3hsy_A Glutamate receptor 2; l 100.0 2.5E-42 8.4E-47 380.7 26.5 311 2-333 58-373 (376)
5 3saj_A Glutamate receptor 1; r 100.0 6.1E-41 2.1E-45 370.8 24.9 314 2-338 65-381 (384)
6 3h6g_A Glutamate receptor, ion 100.0 1.8E-40 6.2E-45 368.8 26.2 311 2-336 69-385 (395)
7 3om0_A Glutamate receptor, ion 100.0 5.8E-40 2E-44 364.4 25.3 310 2-334 68-381 (393)
8 4f11_A Gamma-aminobutyric acid 100.0 9.5E-40 3.3E-44 367.7 22.9 303 3-328 84-404 (433)
9 1jdp_A NPR-C, atrial natriuret 100.0 1E-38 3.6E-43 360.0 28.8 301 3-330 83-397 (441)
10 2e4u_A Metabotropic glutamate 100.0 4.8E-38 1.6E-42 364.0 33.3 326 2-370 115-485 (555)
11 3sm9_A Mglur3, metabotropic gl 100.0 1.7E-38 5.9E-43 359.7 28.4 303 3-326 115-462 (479)
12 3qek_A NMDA glutamate receptor 100.0 1.7E-38 5.8E-43 351.4 25.6 280 2-327 63-369 (384)
13 3ks9_A Mglur1, metabotropic gl 100.0 8.9E-38 3E-42 355.5 29.0 307 2-327 126-475 (496)
14 1dp4_A Atrial natriuretic pept 100.0 2.7E-38 9.1E-43 356.3 24.4 322 3-370 76-423 (435)
15 3qel_B Glutamate [NMDA] recept 100.0 1.5E-38 5E-43 347.0 18.7 281 3-332 62-355 (364)
16 3mq4_A Mglur7, metabotropic gl 100.0 1.3E-37 4.4E-42 353.5 20.2 305 3-326 116-467 (481)
17 3td9_A Branched chain amino ac 100.0 1.9E-31 6.3E-36 293.1 22.6 278 3-328 80-363 (366)
18 3i45_A Twin-arginine transloca 100.0 2.1E-31 7.2E-36 294.9 22.9 296 3-341 72-373 (387)
19 4f06_A Extracellular ligand-bi 100.0 3.3E-31 1.1E-35 291.3 22.5 278 2-319 70-352 (371)
20 3ipc_A ABC transporter, substr 100.0 1.2E-30 4E-35 285.6 21.1 281 2-328 67-352 (356)
21 3h5l_A Putative branched-chain 100.0 6.7E-31 2.3E-35 294.1 18.0 286 2-326 81-395 (419)
22 4eyg_A Twin-arginine transloca 100.0 5.4E-30 1.8E-34 281.6 24.2 283 2-327 70-359 (368)
23 3i09_A Periplasmic branched-ch 100.0 2.6E-30 9E-35 284.8 21.6 271 3-318 70-342 (375)
24 4evq_A Putative ABC transporte 100.0 1.2E-29 3.9E-34 279.7 25.5 280 3-327 81-363 (375)
25 3n0w_A ABC branched chain amin 100.0 5.6E-30 1.9E-34 282.6 22.5 271 3-318 72-346 (379)
26 3hut_A Putative branched-chain 100.0 5.9E-30 2E-34 280.1 21.7 280 2-327 70-353 (358)
27 1usg_A Leucine-specific bindin 100.0 4.8E-30 1.7E-34 279.4 19.7 276 2-322 67-345 (346)
28 3lkb_A Probable branched-chain 100.0 3E-29 1E-33 278.1 16.6 287 3-332 74-379 (392)
29 3eaf_A ABC transporter, substr 100.0 3.1E-28 1.1E-32 269.8 23.0 284 2-329 74-373 (391)
30 3lop_A Substrate binding perip 100.0 1.6E-28 5.3E-33 269.5 20.2 274 3-320 72-354 (364)
31 3sg0_A Extracellular ligand-bi 100.0 1.6E-28 5.5E-33 271.6 18.3 283 3-322 88-385 (386)
32 3n0x_A Possible substrate bind 100.0 2.4E-28 8.1E-33 268.9 19.5 267 2-317 71-347 (374)
33 4gnr_A ABC transporter substra 100.0 6.9E-28 2.4E-32 263.1 21.7 273 2-325 73-351 (353)
34 3snr_A Extracellular ligand-bi 100.0 9.2E-28 3.1E-32 263.1 20.3 281 3-322 68-361 (362)
35 1yae_A Glutamate receptor, ion 99.9 1.9E-27 6.5E-32 254.7 15.0 261 374-728 11-297 (312)
36 1pea_A Amidase operon; gene re 99.9 2.7E-26 9.2E-31 253.6 24.4 282 2-325 73-357 (385)
37 3g3k_A Glutamate receptor, ion 99.9 3.1E-25 1.1E-29 230.7 16.5 232 374-723 2-258 (259)
38 1pb7_A N-methyl-D-aspartate re 99.9 1.1E-25 3.9E-30 238.1 12.5 236 376-724 41-292 (292)
39 2a5s_A N-methyl-D-aspartate re 99.9 2.5E-25 8.5E-30 234.6 9.8 238 372-723 25-283 (284)
40 4h5g_A Amino acid ABC superfam 99.9 2.3E-24 7.8E-29 221.8 15.7 219 376-718 12-237 (243)
41 2rc8_A Glutamate [NMDA] recept 99.9 1.9E-24 6.5E-29 229.1 14.1 217 399-723 67-293 (294)
42 4gvo_A LMO2349 protein; struct 99.9 4.7E-24 1.6E-28 219.4 13.8 222 374-718 7-235 (243)
43 3kzg_A Arginine 3RD transport 99.9 3.9E-23 1.3E-27 211.6 17.5 218 376-719 3-231 (237)
44 2h4a_A YRAM (HI1655); perplasm 99.9 8.5E-24 2.9E-28 225.1 12.1 258 2-322 54-317 (325)
45 1mqi_A Glutamate receptor 2; G 99.9 7E-23 2.4E-27 213.4 18.7 230 375-723 3-262 (263)
46 2v3u_A Glutamate receptor delt 99.9 6E-23 2E-27 214.1 17.5 231 374-723 1-264 (265)
47 3i6v_A Periplasmic His/Glu/Gln 99.9 4.9E-23 1.7E-27 210.2 14.4 219 375-726 4-225 (232)
48 4f3p_A Glutamine-binding perip 99.9 1.3E-22 4.6E-27 209.4 16.3 221 373-719 21-243 (249)
49 3k4u_A Binding component of AB 99.9 1.9E-22 6.4E-27 207.7 16.3 224 375-720 4-230 (245)
50 3ckm_A YRAM (HI1655), LPOA; pe 99.9 9E-23 3.1E-27 219.6 13.7 261 2-323 56-320 (327)
51 3del_B Arginine binding protei 99.9 3.1E-22 1.1E-26 205.6 17.0 222 375-724 10-238 (242)
52 3hv1_A Polar amino acid ABC up 99.9 4.9E-22 1.7E-26 207.6 17.1 224 375-722 20-252 (268)
53 3kbr_A Cyclohexadienyl dehydra 99.9 2.3E-22 8E-27 206.0 13.9 221 375-718 14-237 (239)
54 3tql_A Arginine-binding protei 99.9 9.3E-22 3.2E-26 199.5 17.4 218 376-717 2-227 (227)
55 1ii5_A SLR1257 protein; membra 99.9 1.4E-21 4.9E-26 199.1 16.9 218 375-718 3-226 (233)
56 3h7m_A Sensor protein; histidi 99.9 2.5E-21 8.4E-26 197.5 16.2 219 374-718 9-230 (234)
57 4eq9_A ABC transporter substra 99.9 1.5E-21 5.3E-26 200.7 14.4 223 375-721 7-238 (246)
58 1lst_A Lysine, arginine, ornit 99.9 3.7E-21 1.3E-25 197.0 16.7 222 375-719 3-233 (239)
59 3mpk_A Virulence sensor protei 99.9 2.6E-21 8.9E-26 202.0 15.1 219 375-719 31-253 (267)
60 2y7i_A STM4351; arginine-bindi 99.9 1E-20 3.5E-25 192.2 17.6 218 374-718 4-228 (229)
61 1wdn_A GLNBP, glutamine bindin 99.8 6.6E-21 2.3E-25 193.1 15.5 217 376-718 3-222 (226)
62 4dz1_A DALS D-alanine transpor 99.8 1.1E-20 3.7E-25 196.3 16.4 222 374-718 27-253 (259)
63 2q88_A EHUB, putative ABC tran 99.8 2.7E-20 9.4E-25 192.9 15.4 221 375-717 12-239 (257)
64 2pyy_A Ionotropic glutamate re 99.8 2.4E-20 8.1E-25 189.2 14.4 218 376-718 3-222 (228)
65 2iee_A ORF2, probable ABC tran 99.8 1.8E-20 6E-25 196.1 12.7 220 375-721 20-250 (271)
66 3qax_A Probable ABC transporte 99.8 6.2E-20 2.1E-24 191.4 16.4 217 375-718 30-253 (268)
67 2pvu_A ARTJ; basic amino acid 99.8 9.8E-20 3.3E-24 190.6 17.3 219 374-718 40-262 (272)
68 4i62_A Amino acid ABC transpor 99.8 6E-20 2E-24 191.6 14.8 219 376-718 39-264 (269)
69 1xt8_A Putative amino-acid tra 99.8 1.1E-19 3.7E-24 192.3 14.8 217 376-718 44-265 (292)
70 2yjp_A Putative ABC transporte 99.8 1.4E-19 4.9E-24 191.3 15.0 217 376-718 55-276 (291)
71 2vha_A Periplasmic binding tra 99.8 1.9E-19 6.4E-24 190.0 15.6 221 375-719 16-249 (287)
72 2yln_A Putative ABC transporte 99.8 1.9E-19 6.4E-24 189.5 14.8 216 375-718 56-277 (283)
73 2v25_A Major cell-binding fact 99.7 1.6E-17 5.5E-22 171.9 10.3 213 376-717 38-258 (259)
74 3n5l_A Binding protein compone 98.7 4.8E-08 1.7E-12 103.1 11.0 213 376-716 4-241 (310)
75 3p7i_A PHND, subunit of alkylp 98.7 8.2E-08 2.8E-12 101.6 11.7 215 374-716 12-250 (321)
76 2ozz_A Hypothetical protein YH 98.6 4.4E-08 1.5E-12 96.3 6.8 182 397-717 27-223 (231)
77 2f5x_A BUGD; periplasmic bindi 97.6 0.00063 2.2E-08 71.0 13.7 121 590-716 121-275 (312)
78 3uif_A Sulfonate ABC transport 97.6 0.00022 7.4E-09 76.5 10.4 176 407-702 35-227 (348)
79 2x26_A Periplasmic aliphatic s 97.5 0.00038 1.3E-08 73.0 11.5 121 591-718 96-232 (308)
80 3ksx_A Nitrate transport prote 97.5 0.0011 3.6E-08 70.2 13.8 93 590-689 121-219 (324)
81 2qpq_A Protein BUG27; alpha/be 97.4 0.0012 4.1E-08 68.6 13.7 121 590-716 112-266 (301)
82 2dvz_A BUGE, putative exported 97.4 0.00088 3E-08 69.9 12.3 122 590-716 125-279 (314)
83 3qsl_A Putative exported prote 97.4 0.00076 2.6E-08 71.9 11.8 137 412-667 59-205 (346)
84 3un6_A Hypothetical protein sa 97.4 0.00017 5.8E-09 77.1 6.3 122 590-718 143-283 (341)
85 3ix1_A N-formyl-4-amino-5-amin 97.2 0.00078 2.7E-08 70.4 9.6 78 397-482 14-95 (302)
86 2h3h_A Sugar ABC transporter, 97.2 0.0042 1.4E-07 65.1 14.5 154 3-165 56-216 (313)
87 2h0a_A TTHA0807, transcription 97.1 0.0014 4.7E-08 67.3 10.0 152 2-163 53-213 (276)
88 3brq_A HTH-type transcriptiona 97.0 0.0019 6.6E-08 67.0 9.9 155 3-165 76-236 (296)
89 2qu7_A Putative transcriptiona 96.9 0.0011 3.9E-08 68.6 7.3 148 3-160 62-217 (288)
90 3d02_A Putative LACI-type tran 96.8 0.014 4.6E-07 60.7 14.5 155 3-165 60-223 (303)
91 1dbq_A Purine repressor; trans 96.8 0.0048 1.6E-07 63.7 10.8 151 3-160 62-217 (289)
92 3rot_A ABC sugar transporter, 96.8 0.0031 1.1E-07 65.5 9.3 149 3-157 60-215 (297)
93 1tjy_A Sugar transport protein 96.7 0.014 4.6E-07 61.3 13.4 154 3-165 59-222 (316)
94 3bbl_A Regulatory protein of L 96.6 0.0086 2.9E-07 61.8 10.9 156 2-165 62-224 (287)
95 3c3k_A Alanine racemase; struc 96.6 0.013 4.4E-07 60.4 12.2 149 2-163 62-217 (285)
96 3clk_A Transcription regulator 96.6 0.0051 1.7E-07 63.6 9.1 149 2-159 63-214 (290)
97 2rjo_A Twin-arginine transloca 96.6 0.022 7.6E-07 60.1 14.3 148 5-155 64-222 (332)
98 3d8u_A PURR transcriptional re 96.5 0.0097 3.3E-07 60.8 10.7 152 3-162 58-213 (275)
99 2rgy_A Transcriptional regulat 96.5 0.005 1.7E-07 63.7 8.5 150 3-160 66-219 (290)
100 2fn9_A Ribose ABC transporter, 96.5 0.013 4.4E-07 60.5 11.6 144 3-154 57-215 (290)
101 3k4h_A Putative transcriptiona 96.5 0.0083 2.8E-07 62.0 10.1 152 2-160 67-222 (292)
102 2fvy_A D-galactose-binding per 96.5 0.012 4.2E-07 61.2 11.5 150 3-153 58-226 (309)
103 3gbv_A Putative LACI-family tr 96.5 0.0097 3.3E-07 61.8 10.7 155 2-165 67-232 (304)
104 2o20_A Catabolite control prot 96.5 0.0055 1.9E-07 64.8 8.7 153 3-163 118-272 (332)
105 2x7x_A Sensor protein; transfe 96.5 0.025 8.7E-07 59.4 13.7 154 3-165 61-222 (325)
106 3brs_A Periplasmic binding pro 96.4 0.017 5.8E-07 59.5 12.0 154 3-165 64-224 (289)
107 2hsg_A Glucose-resistance amyl 96.4 0.0054 1.9E-07 64.9 8.3 156 2-165 114-275 (332)
108 3gyb_A Transcriptional regulat 96.4 0.0062 2.1E-07 62.5 8.4 147 2-160 58-206 (280)
109 3dbi_A Sugar-binding transcrip 96.4 0.007 2.4E-07 64.2 9.0 153 3-162 118-274 (338)
110 3cs3_A Sugar-binding transcrip 96.4 0.026 8.7E-07 57.8 12.9 149 4-163 57-210 (277)
111 2k1e_A Water soluble analogue 96.4 0.0016 5.4E-08 55.5 3.0 80 504-587 16-97 (103)
112 3g85_A Transcriptional regulat 96.3 0.013 4.5E-07 60.3 10.4 151 2-162 66-220 (289)
113 3gv0_A Transcriptional regulat 96.3 0.023 7.7E-07 58.6 12.1 152 3-162 65-220 (288)
114 4ddd_A Immunogenic protein; ss 96.3 0.0052 1.8E-07 64.8 7.3 61 590-656 136-202 (327)
115 3l49_A ABC sugar (ribose) tran 96.3 0.015 5.1E-07 60.0 10.6 153 3-165 60-224 (291)
116 2fep_A Catabolite control prot 96.3 0.012 4.2E-07 60.7 9.6 149 3-159 71-224 (289)
117 3ksm_A ABC-type sugar transpor 96.2 0.043 1.5E-06 55.8 13.6 152 5-165 60-221 (276)
118 3h75_A Periplasmic sugar-bindi 96.2 0.05 1.7E-06 57.8 14.2 154 3-158 61-233 (350)
119 3o1i_D Periplasmic protein TOR 96.2 0.012 4.3E-07 61.0 9.2 147 4-155 63-218 (304)
120 2iks_A DNA-binding transcripti 96.1 0.019 6.6E-07 59.2 10.3 154 3-165 75-233 (293)
121 3g1w_A Sugar ABC transporter; 96.1 0.061 2.1E-06 55.7 14.2 157 3-166 60-222 (305)
122 3hcw_A Maltose operon transcri 96.1 0.052 1.8E-06 56.1 13.5 152 2-162 66-224 (295)
123 2x7q_A Ca3427, possible thiami 96.1 0.021 7.3E-07 59.9 10.5 108 590-706 110-236 (321)
124 3k9c_A Transcriptional regulat 96.0 0.041 1.4E-06 56.6 12.2 152 2-163 64-218 (289)
125 2ioy_A Periplasmic sugar-bindi 96.0 0.074 2.5E-06 54.4 14.0 153 3-165 56-216 (283)
126 1qpz_A PURA, protein (purine n 95.9 0.037 1.3E-06 58.5 11.3 153 3-162 113-270 (340)
127 3ctp_A Periplasmic binding pro 95.9 0.0084 2.9E-07 63.3 6.1 147 3-163 115-264 (330)
128 2vk2_A YTFQ, ABC transporter p 95.9 0.068 2.3E-06 55.5 13.1 151 3-158 57-219 (306)
129 3o74_A Fructose transport syst 95.7 0.041 1.4E-06 55.9 10.5 153 3-165 57-215 (272)
130 3egc_A Putative ribose operon 95.7 0.011 3.7E-07 61.1 6.1 152 3-162 63-218 (291)
131 2ih3_C Voltage-gated potassium 95.7 0.0074 2.5E-07 53.1 4.1 76 507-586 40-117 (122)
132 3qk7_A Transcriptional regulat 95.5 0.035 1.2E-06 57.4 9.2 154 3-165 64-223 (294)
133 3l6u_A ABC-type sugar transpor 95.5 0.094 3.2E-06 53.9 12.3 145 3-155 63-220 (293)
134 3kke_A LACI family transcripti 95.4 0.039 1.3E-06 57.3 9.2 148 2-159 69-226 (303)
135 3jv9_A OXYR, transcriptional r 95.4 0.12 4E-06 50.0 12.3 192 376-704 4-207 (219)
136 8abp_A L-arabinose-binding pro 95.4 0.04 1.4E-06 57.1 9.2 162 3-166 56-233 (306)
137 1jx6_A LUXP protein; protein-l 95.4 0.054 1.9E-06 57.2 10.2 149 3-154 103-258 (342)
138 3kjx_A Transcriptional regulat 95.4 0.041 1.4E-06 58.3 9.3 151 3-163 123-280 (344)
139 3lft_A Uncharacterized protein 95.3 0.15 5.2E-06 52.5 13.2 142 2-154 60-210 (295)
140 4ab5_A Transcriptional regulat 95.3 0.13 4.5E-06 49.8 12.1 83 376-483 8-90 (222)
141 2dri_A D-ribose-binding protei 95.3 0.17 5.8E-06 51.3 13.4 154 2-165 55-215 (271)
142 3oxn_A Putative transcriptiona 95.3 0.38 1.3E-05 47.4 15.6 84 375-483 18-101 (241)
143 3eff_K Voltage-gated potassium 95.2 0.017 5.7E-07 52.2 4.9 74 508-585 20-95 (139)
144 2a9h_A Voltage-gated potassium 95.2 0.015 5E-07 53.4 4.3 78 507-588 63-142 (155)
145 3jy6_A Transcriptional regulat 95.2 0.13 4.3E-06 52.4 12.0 149 3-163 62-214 (276)
146 3ho7_A OXYR; beta-alpha-barrel 95.1 0.094 3.2E-06 51.3 10.5 83 376-483 11-93 (232)
147 2g29_A Nitrate transport prote 95.0 0.036 1.2E-06 60.5 7.7 103 596-705 151-272 (417)
148 3e3m_A Transcriptional regulat 95.0 0.18 6.3E-06 53.5 13.1 153 3-163 125-283 (355)
149 3ixl_A Amdase, arylmalonate de 95.0 0.25 8.6E-06 49.0 13.0 92 60-154 105-206 (240)
150 4fe7_A Xylose operon regulator 94.8 0.18 6.1E-06 54.9 12.7 156 2-163 74-236 (412)
151 1byk_A Protein (trehalose oper 94.7 0.14 4.8E-06 51.3 10.6 146 3-165 57-205 (255)
152 3m9w_A D-xylose-binding peripl 94.7 0.22 7.7E-06 51.6 12.5 146 3-155 57-213 (313)
153 2qh8_A Uncharacterized protein 94.7 0.092 3.2E-06 54.4 9.4 141 2-153 67-216 (302)
154 3bil_A Probable LACI-family tr 94.7 0.13 4.3E-06 54.6 10.6 150 3-162 121-273 (348)
155 2fqx_A Membrane lipoprotein TM 94.5 0.34 1.2E-05 50.5 13.3 153 3-164 61-221 (318)
156 3e61_A Putative transcriptiona 94.4 0.084 2.9E-06 53.7 8.3 146 3-164 63-211 (277)
157 3tb6_A Arabinose metabolism tr 94.4 0.03 1E-06 57.8 4.8 154 3-163 70-234 (298)
158 1gud_A ALBP, D-allose-binding 94.3 0.8 2.7E-05 46.7 15.6 160 2-165 57-227 (288)
159 4h33_A LMO2059 protein; bilaye 94.0 0.048 1.7E-06 48.9 4.6 56 531-586 42-99 (137)
160 1zbm_A Hypothetical protein AF 93.9 0.088 3E-06 53.8 7.1 99 596-706 99-210 (280)
161 1jye_A Lactose operon represso 93.9 0.3 1E-05 51.6 11.5 149 3-163 117-271 (349)
162 3huu_A Transcription regulator 93.8 0.18 6.3E-06 52.1 9.5 151 2-165 81-238 (305)
163 3h5o_A Transcriptional regulat 93.5 0.2 6.8E-06 52.8 9.3 151 3-163 117-272 (339)
164 3jvd_A Transcriptional regulat 93.2 0.34 1.2E-05 50.8 10.6 142 4-162 119-263 (333)
165 1us5_A Putative GLUR0 ligand b 92.9 0.23 7.8E-06 51.6 8.4 61 590-656 121-187 (314)
166 3hs3_A Ribose operon repressor 92.7 0.15 5E-06 52.0 6.5 127 23-163 80-211 (277)
167 3fzv_A Probable transcriptiona 92.4 0.84 2.9E-05 46.7 12.1 83 376-483 95-178 (306)
168 3ldc_A Calcium-gated potassium 91.7 0.15 5.2E-06 40.9 4.1 51 532-582 28-80 (82)
169 3uug_A Multiple sugar-binding 91.6 0.54 1.8E-05 49.0 9.5 151 3-158 58-232 (330)
170 3ouf_A Potassium channel prote 91.4 0.087 3E-06 43.9 2.4 58 531-588 31-90 (97)
171 3pjs_K KCSA, voltage-gated pot 91.4 0.013 4.3E-07 54.8 -3.1 72 511-586 50-123 (166)
172 2hqb_A Transcriptional activat 91.3 3.3 0.00011 42.3 15.0 140 2-153 61-204 (296)
173 2esn_A Probable transcriptiona 91.1 2.8 9.4E-05 42.9 14.3 83 376-483 101-186 (310)
174 1i6a_A OXYR, hydrogen peroxide 91.1 0.23 8E-06 48.1 5.6 83 376-483 5-87 (219)
175 1p7b_A Integral membrane chann 90.7 0.18 6.2E-06 52.4 4.5 62 527-588 91-154 (333)
176 2hxr_A HTH-type transcriptiona 90.6 4.2 0.00014 39.4 14.5 83 376-483 30-112 (238)
177 2q67_A Potassium channel prote 90.5 0.19 6.6E-06 43.2 3.8 54 532-585 49-104 (114)
178 3h5t_A Transcriptional regulat 90.5 0.55 1.9E-05 49.9 8.4 132 22-160 145-298 (366)
179 2ql3_A Probable transcriptiona 90.5 1.9 6.6E-05 40.8 11.6 83 376-483 5-87 (209)
180 3miz_A Putative transcriptiona 90.2 0.055 1.9E-06 56.0 0.1 134 21-162 85-229 (301)
181 4esw_A Pyrimidine biosynthesis 90.0 0.77 2.6E-05 48.3 8.9 66 590-662 101-169 (342)
182 2zzv_A ABC transporter, solute 89.9 0.98 3.4E-05 47.9 9.6 59 590-660 164-222 (361)
183 1xl4_A Inward rectifier potass 89.8 0.26 9E-06 50.5 4.8 61 527-587 77-139 (301)
184 1lnq_A MTHK channels, potassiu 89.7 0.17 6E-06 53.2 3.4 124 532-664 45-171 (336)
185 2y7p_A LYSR-type regulatory pr 89.5 3.8 0.00013 39.3 13.0 84 375-483 7-90 (218)
186 3vou_A ION transport 2 domain 89.2 0.38 1.3E-05 43.7 4.9 54 531-584 51-106 (148)
187 3fxq_A LYSR type regulator of 89.1 2.2 7.7E-05 43.5 11.5 85 376-483 92-176 (305)
188 3s99_A Basic membrane lipoprot 89.1 2 6.9E-05 45.2 11.1 144 2-154 84-230 (356)
189 2fyi_A HTH-type transcriptiona 88.9 6.7 0.00023 37.7 14.4 84 376-483 14-97 (228)
190 4gx0_A TRKA domain protein; me 88.8 0.42 1.4E-05 54.3 6.1 122 531-660 50-182 (565)
191 1ixc_A CBNR, LYSR-type regulat 87.3 4.9 0.00017 40.5 12.6 83 376-483 91-173 (294)
192 2pfz_A Putative exported prote 87.2 2.8 9.7E-05 43.0 10.7 58 590-659 128-185 (301)
193 2pfy_A Putative exported prote 87.0 2.8 9.5E-05 43.0 10.5 87 590-689 129-216 (301)
194 1al3_A Cys regulon transcripti 87.0 10 0.00035 38.9 15.1 206 376-718 93-305 (324)
195 1orq_C Potassium channel; volt 86.7 0.49 1.7E-05 46.3 4.3 74 507-584 144-219 (223)
196 3lkv_A Uncharacterized conserv 86.4 3.4 0.00012 42.3 10.8 143 2-154 67-221 (302)
197 1atg_A MODA, periplasmic molyb 86.0 1.6 5.3E-05 42.3 7.7 71 404-483 14-90 (231)
198 2dgd_A 223AA long hypothetical 85.6 4.9 0.00017 39.0 11.0 92 60-154 96-197 (223)
199 3r26_A Molybdate-binding perip 85.6 5.6 0.00019 39.0 11.6 70 405-483 22-97 (237)
200 2i49_A Bicarbonate transporter 85.6 1.9 6.6E-05 46.8 8.7 106 595-705 153-280 (429)
201 2de3_A Dibenzothiophene desulf 85.3 1.6 5.5E-05 46.3 7.8 76 637-718 210-299 (365)
202 2h9b_A HTH-type transcriptiona 84.5 14 0.00047 37.6 14.5 82 377-483 91-172 (312)
203 3gzg_A Molybdate-binding perip 84.4 6.3 0.00021 39.1 11.3 70 405-483 38-113 (253)
204 2h98_A HTH-type transcriptiona 84.4 20 0.00067 36.5 15.6 82 377-483 91-172 (313)
205 2xed_A Putative maleate isomer 84.4 6 0.0002 39.8 11.1 92 60-154 134-234 (273)
206 1uth_A LYSR-type regulatory pr 83.8 6.9 0.00024 40.0 11.8 83 376-483 105-187 (315)
207 2hzl_A Trap-T family sorbitol/ 83.7 2.5 8.5E-05 44.8 8.4 52 406-460 53-104 (365)
208 3bfj_A 1,3-propanediol oxidore 83.1 2.7 9.2E-05 44.9 8.4 88 62-149 23-114 (387)
209 3qi7_A Putative transcriptiona 82.8 5.3 0.00018 41.8 10.1 151 3-157 86-252 (371)
210 1twy_A ABC transporter, peripl 82.8 17 0.00057 36.2 14.1 71 403-483 41-113 (290)
211 2qks_A KIR3.1-prokaryotic KIR 82.2 1.1 3.9E-05 46.2 4.7 57 532-588 78-136 (321)
212 2l82_A Designed protein OR32; 81.7 20 0.00067 29.2 11.6 96 50-154 5-104 (162)
213 3ox4_A Alcohol dehydrogenase 2 81.7 1.5 5.2E-05 46.8 5.7 90 61-150 20-111 (383)
214 1sw5_A Osmoprotection protein 81.3 6.8 0.00023 39.4 10.3 104 591-704 124-238 (275)
215 3beh_A MLL3241 protein; transm 81.0 0.57 2E-05 49.6 2.1 75 506-584 139-215 (355)
216 2r9r_B Paddle chimera voltage 77.1 2.5 8.5E-05 47.0 5.8 73 509-585 356-430 (514)
217 3m9w_A D-xylose-binding peripl 75.6 9.7 0.00033 38.9 9.6 79 73-154 3-84 (313)
218 1rrm_A Lactaldehyde reductase; 75.5 3 0.0001 44.5 5.8 89 62-150 21-111 (386)
219 1vlj_A NADH-dependent butanol 74.9 5.8 0.0002 42.6 7.8 88 61-148 32-122 (407)
220 3l49_A ABC sugar (ribose) tran 74.0 18 0.00062 36.2 11.1 79 73-154 6-87 (291)
221 1xs5_A 29 kDa protein, membran 72.5 20 0.00068 35.2 10.4 36 408-451 21-56 (241)
222 3hhf_B Transcriptional regulat 72.4 3.5 0.00012 38.9 4.9 80 376-483 7-86 (213)
223 3o74_A Fructose transport syst 71.8 13 0.00045 36.7 9.3 79 73-154 3-83 (272)
224 3uhj_A Probable glycerol dehyd 71.8 4.2 0.00014 43.3 5.6 74 62-139 43-116 (387)
225 1o2d_A Alcohol dehydrogenase, 71.2 8.3 0.00028 40.8 7.8 88 61-149 30-120 (371)
226 1nh8_A ATP phosphoribosyltrans 71.1 9.1 0.00031 38.6 7.5 102 591-704 120-224 (304)
227 3kos_A HTH-type transcriptiona 71.0 15 0.00051 34.7 9.2 105 592-703 95-203 (219)
228 3k6v_A Solute-binding protein 70.8 73 0.0025 33.1 14.8 69 406-483 59-133 (354)
229 3gbv_A Putative LACI-family tr 70.7 13 0.00044 37.6 9.1 84 71-154 7-95 (304)
230 3dbi_A Sugar-binding transcrip 69.9 16 0.00054 37.8 9.7 85 67-154 56-144 (338)
231 3hn0_A Nitrate transport prote 69.9 6.2 0.00021 39.9 6.3 61 602-667 96-161 (283)
232 2klu_A T-cell surface glycopro 69.2 12 0.00042 27.6 5.7 40 745-790 13-52 (70)
233 1mkz_A Molybdenum cofactor bio 69.1 16 0.00054 33.7 8.3 65 73-139 11-79 (172)
234 3g1w_A Sugar ABC transporter; 67.9 10 0.00036 38.4 7.7 80 73-154 5-87 (305)
235 3tb6_A Arabinose metabolism tr 66.8 22 0.00076 35.5 9.9 79 73-154 16-100 (298)
236 3h75_A Periplasmic sugar-bindi 65.7 10 0.00035 39.5 7.2 80 72-154 3-87 (350)
237 3qk7_A Transcriptional regulat 64.8 34 0.0012 34.3 10.8 77 73-154 7-89 (294)
238 3l6u_A ABC-type sugar transpor 64.8 18 0.0006 36.3 8.6 79 73-154 9-90 (293)
239 3szp_A Transcriptional regulat 64.6 4.4 0.00015 40.6 3.9 72 627-704 213-286 (291)
240 2rin_A Putative glycine betain 64.5 9.8 0.00034 38.8 6.5 38 406-452 24-61 (298)
241 3jy6_A Transcriptional regulat 64.4 19 0.00064 35.8 8.6 77 73-154 8-86 (276)
242 3ukm_A Potassium channel subfa 64.3 2.6 9E-05 42.2 2.0 66 531-596 200-274 (280)
243 3fd3_A Chromosome replication 64.3 30 0.001 32.0 9.7 68 402-482 15-82 (208)
244 2hpg_A ABC transporter, peripl 64.0 5.4 0.00018 41.4 4.4 88 590-689 148-236 (327)
245 3uug_A Multiple sugar-binding 62.5 19 0.00064 36.9 8.4 79 73-154 4-85 (330)
246 1tjy_A Sugar transport protein 61.2 14 0.00049 37.7 7.2 80 73-154 4-86 (316)
247 1jq5_A Glycerol dehydrogenase; 61.1 10 0.00036 40.0 6.2 96 62-165 22-119 (370)
248 3ce9_A Glycerol dehydrogenase; 61.1 13 0.00045 38.9 6.9 98 62-167 24-123 (354)
249 2xxp_A CPS2A; replication, pep 60.9 8.9 0.00031 40.8 5.5 80 575-665 13-98 (398)
250 3h5o_A Transcriptional regulat 60.6 32 0.0011 35.4 9.9 80 71-154 61-142 (339)
251 2fn9_A Ribose ABC transporter, 59.7 22 0.00076 35.5 8.2 79 73-154 3-84 (290)
252 4dik_A Flavoprotein; TM0755, e 59.5 25 0.00084 37.6 8.7 92 73-169 266-365 (410)
253 3onm_A Transcriptional regulat 59.5 1.2E+02 0.0041 28.6 14.0 81 376-483 27-107 (238)
254 3brq_A HTH-type transcriptiona 59.4 36 0.0012 33.9 9.9 80 71-154 18-102 (296)
255 2l69_A Rossmann 2X3 fold prote 59.0 48 0.0016 26.1 7.8 38 47-84 26-63 (134)
256 3k4h_A Putative transcriptiona 58.8 19 0.00066 36.0 7.6 79 72-154 8-93 (292)
257 3rot_A ABC sugar transporter, 58.5 20 0.00069 36.1 7.7 81 73-154 4-87 (297)
258 3gv0_A Transcriptional regulat 57.4 42 0.0014 33.4 9.8 79 72-154 8-90 (288)
259 3ksm_A ABC-type sugar transpor 56.9 21 0.00073 35.2 7.5 80 74-154 2-85 (276)
260 3l6g_A Betaine ABC transporter 56.9 22 0.00076 35.1 7.4 41 403-452 16-56 (256)
261 3sya_A G protein-activated inw 56.2 9.1 0.00031 39.5 4.4 60 530-589 89-152 (340)
262 1h3d_A ATP-phosphoribosyltrans 56.1 38 0.0013 34.1 8.8 101 591-704 115-218 (299)
263 1jx6_A LUXP protein; protein-l 55.9 38 0.0013 34.7 9.5 82 73-154 44-129 (342)
264 1y5e_A Molybdenum cofactor bio 55.8 36 0.0012 31.1 8.1 68 70-139 11-82 (169)
265 3huu_A Transcription regulator 55.5 18 0.00062 36.6 6.7 84 67-154 17-107 (305)
266 3kke_A LACI family transcripti 55.4 28 0.00095 35.1 8.1 80 71-154 14-95 (303)
267 2pjk_A 178AA long hypothetical 54.9 36 0.0012 31.5 7.9 67 70-138 13-90 (178)
268 3cij_A UPF0100 protein AF_0094 54.6 1.7E+02 0.0059 29.0 14.6 70 405-483 20-95 (295)
269 8abp_A L-arabinose-binding pro 54.4 29 0.00099 34.9 8.1 78 73-154 3-83 (306)
270 2fep_A Catabolite control prot 54.3 34 0.0012 34.1 8.6 78 73-154 17-96 (289)
271 3cfx_A UPF0100 protein MA_0280 54.1 1.8E+02 0.006 29.0 14.0 70 405-483 20-95 (296)
272 2iks_A DNA-binding transcripti 53.5 19 0.00064 36.2 6.4 81 71-154 19-101 (293)
273 3e3m_A Transcriptional regulat 53.5 39 0.0013 35.0 9.1 80 71-154 69-150 (355)
274 3isp_A HTH-type transcriptiona 53.3 58 0.002 32.5 10.2 47 433-483 127-173 (303)
275 2xwv_A Sialic acid-binding per 53.3 23 0.00079 36.2 7.0 60 590-660 133-192 (312)
276 2fvy_A D-galactose-binding per 52.6 38 0.0013 34.1 8.6 79 73-154 3-85 (309)
277 2czl_A Hypothetical protein TT 52.6 20 0.00069 35.5 6.4 59 595-661 91-150 (272)
278 3d02_A Putative LACI-type tran 52.5 23 0.00077 35.7 6.9 80 73-154 5-87 (303)
279 3rfq_A Pterin-4-alpha-carbinol 51.9 27 0.00094 32.5 6.6 66 72-139 30-99 (185)
280 1ccw_A Protein (glutamate muta 51.8 1.1E+02 0.0036 26.7 10.2 85 74-165 5-93 (137)
281 3lr1_A Tungstate ABC transport 51.6 9 0.00031 37.5 3.3 75 401-484 18-95 (236)
282 3p6l_A Sugar phosphate isomera 51.5 56 0.0019 32.0 9.5 93 61-154 25-129 (262)
283 3hl0_A Maleylacetate reductase 51.3 20 0.00067 37.5 6.1 82 61-146 23-106 (353)
284 2is8_A Molybdopterin biosynthe 51.1 34 0.0012 31.1 7.1 64 74-139 3-72 (164)
285 1r9l_A Glycine betaine-binding 50.6 29 0.00099 35.4 7.2 40 405-452 24-63 (309)
286 3kjx_A Transcriptional regulat 49.9 64 0.0022 33.1 10.1 78 73-154 69-148 (344)
287 3e61_A Putative transcriptiona 49.6 33 0.0011 33.9 7.4 76 73-154 9-87 (277)
288 2ioy_A Periplasmic sugar-bindi 49.4 41 0.0014 33.3 8.2 79 73-154 2-83 (283)
289 2o20_A Catabolite control prot 49.1 47 0.0016 34.0 8.8 80 71-154 62-143 (332)
290 3tmg_A Glycine betaine, L-prol 48.8 53 0.0018 32.8 8.8 56 375-452 15-70 (280)
291 3lmz_A Putative sugar isomeras 48.7 51 0.0017 32.2 8.6 93 61-154 33-127 (257)
292 2h3h_A Sugar ABC transporter, 48.4 37 0.0013 34.3 7.8 79 74-154 3-83 (313)
293 3cfz_A UPF0100 protein MJ1186; 48.3 1.9E+02 0.0066 28.6 13.2 71 404-483 19-95 (292)
294 2vk2_A YTFQ, ABC transporter p 48.2 36 0.0012 34.3 7.6 79 73-154 3-84 (306)
295 3fni_A Putative diflavin flavo 47.5 84 0.0029 28.2 9.1 76 73-156 5-87 (159)
296 3egc_A Putative ribose operon 47.5 22 0.00074 35.6 5.7 79 72-154 8-88 (291)
297 2yxb_A Coenzyme B12-dependent 47.3 1.2E+02 0.0042 27.2 10.2 86 73-165 19-108 (161)
298 2qsx_A Putative transcriptiona 46.4 1.5E+02 0.0053 27.5 11.5 70 629-704 140-211 (218)
299 2dri_A D-ribose-binding protei 46.4 49 0.0017 32.5 8.2 79 73-154 2-83 (271)
300 3iwt_A 178AA long hypothetical 46.4 52 0.0018 30.2 7.7 64 74-139 17-91 (178)
301 3lte_A Response regulator; str 46.4 92 0.0032 26.0 9.1 59 87-154 17-77 (132)
302 1jye_A Lactose operon represso 46.1 40 0.0014 34.8 7.7 81 72-154 61-143 (349)
303 3um7_A Potassium channel subfa 46.1 6.9 0.00024 39.9 1.5 53 531-583 114-168 (309)
304 4edp_A ABC transporter, substr 46.0 1.5E+02 0.0051 30.0 12.2 80 631-714 216-297 (351)
305 2zsk_A PH1733, 226AA long hypo 45.9 57 0.002 31.3 8.2 41 61-104 104-144 (226)
306 3muq_A Uncharacterized conserv 45.8 11 0.00038 36.9 2.9 75 401-484 18-95 (237)
307 3jzd_A Iron-containing alcohol 45.8 25 0.00087 36.7 5.9 96 61-165 25-122 (358)
308 3gt7_A Sensor protein; structu 45.1 1.1E+02 0.0037 26.7 9.6 58 87-153 18-77 (154)
309 3d8u_A PURR transcriptional re 44.6 44 0.0015 32.9 7.5 78 73-154 4-83 (275)
310 3i42_A Response regulator rece 44.1 1.4E+02 0.0046 24.7 11.1 58 87-153 14-73 (127)
311 3bil_A Probable LACI-family tr 44.1 34 0.0012 35.4 6.7 78 73-154 67-146 (348)
312 2eq5_A 228AA long hypothetical 43.8 14 0.00049 35.7 3.5 66 69-139 113-184 (228)
313 2rgy_A Transcriptional regulat 43.7 40 0.0014 33.6 7.0 78 73-154 9-91 (290)
314 2q5c_A NTRC family transcripti 43.6 1.1E+02 0.0039 28.5 9.7 109 30-155 54-162 (196)
315 3um7_A Potassium channel subfa 43.6 11 0.00039 38.3 2.7 52 532-583 224-283 (309)
316 2g2c_A Putative molybdenum cof 43.4 34 0.0012 31.2 5.8 64 74-139 7-79 (167)
317 3s99_A Basic membrane lipoprot 43.0 40 0.0014 35.2 7.0 76 72-151 26-107 (356)
318 2qip_A Protein of unknown func 42.8 1.6E+02 0.0056 26.4 10.4 93 61-154 36-134 (165)
319 2fqx_A Membrane lipoprotein TM 42.8 61 0.0021 33.0 8.4 63 73-139 5-72 (318)
320 2vd3_A ATP phosphoribosyltrans 42.3 23 0.00077 35.5 4.6 101 591-704 105-208 (289)
321 2ks1_B Epidermal growth factor 42.2 38 0.0013 23.1 4.2 12 757-768 29-40 (44)
322 2hqb_A Transcriptional activat 42.1 45 0.0016 33.5 7.1 63 73-138 6-72 (296)
323 3hcw_A Maltose operon transcri 42.0 40 0.0014 33.7 6.7 78 73-154 8-92 (295)
324 3gl9_A Response regulator; bet 42.0 1E+02 0.0035 25.5 8.5 58 87-153 13-72 (122)
325 2l69_A Rossmann 2X3 fold prote 41.9 90 0.0031 24.6 6.9 70 48-126 52-121 (134)
326 1ta9_A Glycerol dehydrogenase; 41.8 23 0.0008 38.3 5.0 97 61-165 80-178 (450)
327 3ezx_A MMCP 1, monomethylamine 41.7 1.7E+02 0.0058 27.7 10.7 87 73-165 93-185 (215)
328 3k9c_A Transcriptional regulat 41.3 63 0.0022 32.1 8.1 78 71-154 11-89 (289)
329 3t6k_A Response regulator rece 40.8 1.1E+02 0.0039 25.8 8.8 58 87-153 15-74 (136)
330 1oj7_A Hypothetical oxidoreduc 40.6 25 0.00087 37.5 5.1 82 63-148 43-127 (408)
331 3l4e_A Uncharacterized peptida 40.6 95 0.0032 29.3 8.6 96 63-167 18-122 (206)
332 2hxw_A Major antigenic peptide 39.7 54 0.0019 31.3 7.1 40 405-454 16-55 (237)
333 3grc_A Sensor protein, kinase; 39.1 93 0.0032 26.4 8.0 57 87-152 17-75 (140)
334 3pzy_A MOG; ssgcid, seattle st 38.8 60 0.002 29.5 6.6 63 73-138 8-75 (164)
335 2x7x_A Sensor protein; transfe 38.7 70 0.0024 32.4 8.1 79 73-154 7-88 (325)
336 3spc_A Inward-rectifier K+ cha 38.6 19 0.00065 37.2 3.5 60 530-589 92-155 (343)
337 2rjo_A Twin-arginine transloca 38.1 41 0.0014 34.4 6.2 79 73-154 6-89 (332)
338 3kbq_A Protein TA0487; structu 37.6 56 0.0019 29.9 6.2 62 74-138 5-71 (172)
339 2gzm_A Glutamate racemase; enz 37.5 86 0.0029 31.0 8.2 31 3-33 64-94 (267)
340 3brs_A Periplasmic binding pro 37.4 29 0.00098 34.6 4.7 81 73-154 6-91 (289)
341 1dbq_A Purine repressor; trans 37.4 71 0.0024 31.5 7.8 78 73-154 8-88 (289)
342 3mz1_A Putative transcriptiona 37.4 40 0.0014 33.4 5.9 71 627-703 215-287 (300)
343 1y80_A Predicted cobalamin bin 37.3 1.7E+02 0.0058 27.5 10.0 87 73-165 89-179 (210)
344 3bbl_A Regulatory protein of L 37.2 52 0.0018 32.7 6.6 78 73-154 5-88 (287)
345 1gud_A ALBP, D-allose-binding 37.2 73 0.0025 31.6 7.8 81 73-154 2-85 (288)
346 3umf_A Adenylate kinase; rossm 37.1 15 0.0005 35.4 2.2 32 3-34 29-60 (217)
347 2hsg_A Glucose-resistance amyl 36.9 65 0.0022 32.8 7.5 78 73-154 61-140 (332)
348 3c3k_A Alanine racemase; struc 36.6 75 0.0026 31.4 7.8 77 73-154 9-87 (285)
349 2pln_A HP1043, response regula 36.6 1.1E+02 0.0037 25.8 8.0 55 87-152 29-83 (137)
350 2l2t_A Receptor tyrosine-prote 36.2 93 0.0032 21.2 5.3 7 761-767 32-38 (44)
351 3kht_A Response regulator; PSI 35.9 1.8E+02 0.006 24.7 9.4 60 87-153 16-77 (144)
352 3cg4_A Response regulator rece 35.6 2E+02 0.0068 24.2 13.4 57 87-152 18-76 (142)
353 3clk_A Transcription regulator 35.0 39 0.0013 33.6 5.3 79 73-154 9-89 (290)
354 1jlj_A Gephyrin; globular alph 34.8 85 0.0029 29.2 7.1 69 69-139 11-88 (189)
355 2oho_A Glutamate racemase; iso 33.5 66 0.0023 32.0 6.5 31 3-33 73-103 (273)
356 2lpm_A Two-component response 33.4 44 0.0015 28.6 4.5 67 77-154 12-80 (123)
357 3to5_A CHEY homolog; alpha(5)b 33.1 1.8E+02 0.006 25.1 8.5 59 87-153 23-83 (134)
358 3o1i_D Periplasmic protein TOR 33.1 47 0.0016 33.2 5.5 80 73-154 6-88 (304)
359 3c3m_A Response regulator rece 32.6 2.1E+02 0.0072 24.0 9.2 58 87-153 14-73 (138)
360 3cnb_A DNA-binding response re 32.5 1.7E+02 0.0057 24.7 8.5 58 87-152 19-79 (143)
361 2dwu_A Glutamate racemase; iso 31.8 1.8E+02 0.0061 28.8 9.5 109 2-139 67-190 (276)
362 2zay_A Response regulator rece 31.7 1.4E+02 0.0048 25.4 8.0 56 87-151 19-76 (147)
363 3lua_A Response regulator rece 31.5 97 0.0033 26.3 6.8 56 87-151 15-75 (140)
364 2j48_A Two-component sensor ki 31.4 1.7E+02 0.0058 23.4 8.1 58 87-153 12-71 (119)
365 1jfl_A Aspartate racemase; alp 31.3 89 0.003 30.0 6.9 39 63-104 107-145 (228)
366 3heb_A Response regulator rece 31.3 2.5E+02 0.0085 24.0 10.4 58 87-153 15-85 (152)
367 3hs3_A Ribose operon repressor 31.2 76 0.0026 31.2 6.7 67 68-137 6-75 (277)
368 3guv_A Site-specific recombina 30.7 2.9E+02 0.0099 24.6 10.8 39 116-154 60-106 (167)
369 3tsm_A IGPS, indole-3-glycerol 30.7 2E+02 0.0067 28.5 9.3 87 61-155 82-171 (272)
370 1i4n_A Indole-3-glycerol phosp 30.5 89 0.0031 30.6 6.7 86 61-155 64-152 (251)
371 3rvy_A ION transport protein; 30.4 18 0.00062 36.4 1.8 58 530-587 178-243 (285)
372 3cvg_A Putative metal binding 30.3 27 0.00093 35.2 3.1 74 402-484 33-116 (294)
373 3sr0_A Adenylate kinase; phosp 29.9 23 0.0008 33.6 2.3 85 5-113 2-87 (206)
374 3hdv_A Response regulator; PSI 29.7 1.6E+02 0.0053 24.7 7.8 58 87-153 18-78 (136)
375 3rf7_A Iron-containing alcohol 29.6 69 0.0023 33.6 6.1 82 62-147 40-129 (375)
376 2qr3_A Two-component system re 29.3 1.3E+02 0.0043 25.4 7.1 58 87-153 14-78 (140)
377 3hv2_A Response regulator/HD d 29.3 2.3E+02 0.0078 24.3 9.0 58 87-153 25-84 (153)
378 3p9x_A Phosphoribosylglycinami 28.5 2.4E+02 0.0081 26.7 9.1 88 60-153 16-105 (211)
379 3ukm_A Potassium channel subfa 28.0 31 0.001 34.5 2.8 54 530-583 91-146 (280)
380 3nhm_A Response regulator; pro 27.9 2.5E+02 0.0085 23.2 8.8 57 87-153 15-73 (133)
381 3g85_A Transcriptional regulat 27.8 32 0.0011 34.3 3.1 69 71-142 10-81 (289)
382 3f2i_A ALR0221 protein; alpha- 27.8 2.9E+02 0.01 24.9 9.5 94 53-151 26-123 (172)
383 3f6p_A Transcriptional regulat 27.8 1.5E+02 0.005 24.3 7.1 57 87-152 13-71 (120)
384 2gkg_A Response regulator homo 27.7 1E+02 0.0036 25.2 6.1 57 87-152 16-75 (127)
385 2nr1_A NR1 M2, M2; receptor, s 27.6 17 0.00058 21.5 0.5 18 531-548 7-24 (27)
386 1di6_A MOGA, molybdenum cofact 27.5 1.2E+02 0.0042 28.2 6.9 65 73-139 4-76 (195)
387 1qpz_A PURA, protein (purine n 27.3 1.9E+02 0.0064 29.3 9.1 66 71-139 57-124 (340)
388 3okf_A 3-dehydroquinate syntha 27.1 1.2E+02 0.004 31.9 7.4 95 66-165 56-158 (390)
389 2rjn_A Response regulator rece 26.8 1.7E+02 0.0057 25.3 7.6 58 87-153 18-77 (154)
390 2pbq_A Molybdenum cofactor bio 26.8 1.3E+02 0.0045 27.5 6.9 63 74-139 7-78 (178)
391 3kto_A Response regulator rece 26.7 1.2E+02 0.0041 25.6 6.4 58 87-153 17-78 (136)
392 4ecf_A ABC-type phosphate tran 26.7 73 0.0025 31.4 5.5 71 403-483 17-91 (264)
393 1uuy_A CNX1, molybdopterin bio 26.7 64 0.0022 29.3 4.6 65 73-139 6-81 (167)
394 3miz_A Putative transcriptiona 26.6 1.6E+02 0.0054 29.1 8.3 83 67-154 8-93 (301)
395 4a29_A Engineered retro-aldol 26.6 1.3E+02 0.0046 29.3 7.0 85 62-155 68-155 (258)
396 2h0a_A TTHA0807, transcription 26.5 31 0.0011 34.0 2.7 76 75-154 2-79 (276)
397 1xrs_B D-lysine 5,6-aminomutas 26.5 4.6E+02 0.016 25.6 11.9 87 73-165 121-223 (262)
398 3eod_A Protein HNR; response r 26.5 2.3E+02 0.0078 23.3 8.2 58 87-153 18-77 (130)
399 1mb3_A Cell division response 26.4 2.6E+02 0.0088 22.6 8.5 57 87-152 12-70 (124)
400 2qu7_A Putative transcriptiona 26.4 1.2E+02 0.004 29.9 7.1 64 73-139 9-73 (288)
401 3cg0_A Response regulator rece 26.3 1.8E+02 0.0063 24.3 7.7 58 87-152 20-80 (140)
402 2pju_A Propionate catabolism o 26.2 2.7E+02 0.0092 26.6 9.1 109 30-155 66-174 (225)
403 3eeg_A 2-isopropylmalate synth 26.1 4E+02 0.014 27.0 11.1 34 2-35 15-48 (325)
404 2jfn_A Glutamate racemase; cel 25.1 1E+02 0.0035 30.8 6.3 31 3-33 83-113 (285)
405 3kn3_A Putative periplasmic pr 25.1 38 0.0013 33.1 2.9 74 401-483 18-94 (242)
406 3iv7_A Alcohol dehydrogenase I 25.1 38 0.0013 35.5 3.1 95 61-166 26-122 (364)
407 2rdm_A Response regulator rece 25.0 2E+02 0.007 23.7 7.6 58 87-153 16-77 (132)
408 2qxy_A Response regulator; reg 24.7 1.8E+02 0.0063 24.4 7.4 57 87-153 15-73 (142)
409 3hly_A Flavodoxin-like domain; 24.5 2E+02 0.0069 25.6 7.6 82 74-163 2-89 (161)
410 2qzj_A Two-component response 24.5 2.8E+02 0.0096 23.2 8.5 58 87-153 15-74 (136)
411 3cfy_A Putative LUXO repressor 24.4 3E+02 0.01 23.0 8.6 58 87-153 15-74 (137)
412 2knc_A Integrin alpha-IIB; tra 24.2 1.6E+02 0.0055 21.0 5.1 19 750-768 24-42 (54)
413 2b4l_A Glycine betaine-binding 24.1 94 0.0032 30.8 5.7 58 374-453 163-220 (268)
414 3a10_A Response regulator; pho 24.1 2.7E+02 0.0094 22.1 8.7 58 87-153 12-71 (116)
415 3lft_A Uncharacterized protein 23.5 1E+02 0.0035 30.6 6.0 65 73-138 3-71 (295)
416 1dbw_A Transcriptional regulat 23.3 2.9E+02 0.01 22.5 8.3 58 87-153 14-73 (126)
417 1byk_A Protein (trehalose oper 22.3 1.5E+02 0.0052 28.4 6.9 63 73-138 3-67 (255)
418 3hzh_A Chemotaxis response reg 22.1 2.5E+02 0.0084 24.3 7.8 59 87-153 47-109 (157)
419 4es6_A Uroporphyrinogen-III sy 22.1 26 0.00089 34.5 1.1 86 59-150 115-205 (254)
420 3crn_A Response regulator rece 22.1 2.2E+02 0.0074 23.7 7.2 58 87-153 14-73 (132)
421 3cs3_A Sugar-binding transcrip 22.0 1.8E+02 0.0061 28.3 7.5 71 73-154 9-81 (277)
422 1k68_A Phytochrome response re 22.0 3.3E+02 0.011 22.4 10.3 58 87-153 13-81 (140)
423 1k66_A Phytochrome response re 21.9 3.5E+02 0.012 22.6 9.0 58 87-153 17-88 (149)
424 2i2x_B MTAC, methyltransferase 21.8 5E+02 0.017 25.1 10.5 84 73-165 124-212 (258)
425 2jwa_A Receptor tyrosine-prote 21.8 1.8E+02 0.0063 19.7 4.8 21 748-768 19-39 (44)
426 3hdg_A Uncharacterized protein 21.4 2.6E+02 0.0088 23.3 7.6 58 87-153 18-77 (137)
427 1dz3_A Stage 0 sporulation pro 21.3 3.4E+02 0.012 22.2 8.5 58 87-152 13-73 (130)
428 3mwb_A Prephenate dehydratase; 21.1 1.3E+02 0.0045 30.4 6.1 84 602-690 6-100 (313)
429 2jba_A Phosphate regulon trans 21.0 3.3E+02 0.011 22.0 8.5 58 87-153 13-72 (127)
430 1qkk_A DCTD, C4-dicarboxylate 20.9 2.8E+02 0.0095 23.8 7.9 58 87-153 14-73 (155)
431 2pl1_A Transcriptional regulat 20.8 2.5E+02 0.0087 22.5 7.2 58 87-153 11-70 (121)
432 3o1l_A Formyltetrahydrofolate 20.8 6.4E+02 0.022 25.2 11.2 95 5-105 24-137 (302)
433 2jfq_A Glutamate racemase; cel 20.8 2E+02 0.0068 28.7 7.4 31 3-33 83-113 (286)
434 1sg6_A Pentafunctional AROM po 20.5 2.4E+02 0.0081 29.6 8.3 94 67-165 31-140 (393)
435 3r0j_A Possible two component 20.5 2.9E+02 0.0098 26.4 8.5 59 87-154 34-94 (250)
436 2qmw_A PDT, prephenate dehydra 20.3 1.8E+02 0.006 28.7 6.6 83 603-691 4-97 (267)
437 3ney_A 55 kDa erythrocyte memb 20.1 5E+02 0.017 24.0 9.5 27 2-28 18-44 (197)
438 4exl_A PBP 1, phosphate-bindin 20.1 1.4E+02 0.0049 29.2 6.2 70 404-483 18-91 (265)
439 3jte_A Response regulator rece 20.1 2.8E+02 0.0097 23.2 7.6 58 87-153 14-75 (143)
440 3hhg_A Transcriptional regulat 20.0 49 0.0017 33.0 2.7 80 376-483 93-172 (306)
No 1
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=100.00 E-value=1.1e-92 Score=865.48 Aligned_cols=712 Identities=20% Similarity=0.355 Sum_probs=586.1
Q ss_pred CCCeEEEEccCCchhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEeccCChHHHHHHHHHHHHHcCcEEEEEEEEc
Q 003093 2 EGQTVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVD 81 (848)
Q Consensus 2 ~~~V~aiIGp~~S~~~~ava~i~~~~~vP~Is~~at~p~ls~~~~p~f~r~~p~d~~q~~ai~~~~~~~~w~~vaii~~d 81 (848)
+++|+|||||.+|.++.++++++++++||+||+ +.+.+ .++||+||+.|+ |+.++++++++|||++|++|| |
T Consensus 58 ~~~V~aiiG~~~S~~~~a~~~i~~~~~iP~is~--~~~~~--~~~~~~~r~~p~---~~~a~~~l~~~~gw~~v~ii~-d 129 (823)
T 3kg2_A 58 SRGVYAIFGFYDKKSVNTITSFCGTLHVSFITP--SFPTD--GTHPFVIQMRPD---LKGALLSLIEYYQWDKFAYLY-D 129 (823)
T ss_dssp HTTCSEEEECCCTTTHHHHHHHHHHTTCEEEEC--SCCCS--SCCSSEEECSCC---CHHHHHHHHHHTTCSEEEEEE-C
T ss_pred hcCcEEEEcCCChhHHHHHHHHhhcCCCceeec--ccCCC--CCCceEEEeCCC---HHHHHHHHHHHCCCCEEEEEE-e
Confidence 358999999999999999999999999999997 33333 367999999998 889999999999999999999 8
Q ss_pred CCCccchHHHHHHHHhccCcEEEEeeecCCC--CChHHHHHHHHHHhcCCCeEEEEEccCCcHHHHHHHHHHcCCCCCCe
Q 003093 82 DDHGRNGIAALGDTLAAKRCRISFKAPLSVE--ATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGY 159 (848)
Q Consensus 82 d~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~--~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~ 159 (848)
++||....+.+.+++++.|+||++.+.++.+ .++.|+..+|++|+++++|+|+++++.+++..++++|+++||++++|
T Consensus 130 ~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~ 209 (823)
T 3kg2_A 130 SDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDKKDETYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKGY 209 (823)
T ss_dssp GGGCTHHHHHHHHHHHHTTCEEEEEECSSCCSSSTTTTTTTHHHHTTTTTCCEEEEECCHHHHHHHHHHHHHHTTTBTTC
T ss_pred CChhHHHHHHHHHHhhccCCceEEEEeecCCCCccchhHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCcCCCCe
Confidence 8899999999999999999999999877765 23588999999999999999999999999999999999999999999
Q ss_pred EEEecCccccccCCCCCCCcccccccceeEEEEEecCCchhHHHHHHHHHhhccC-CCCCCCCCCCcchhhhhhHHHHHH
Q 003093 160 VWIATSWLSTALDTNSPFPSDVMDDIQGVLTLRTYTPDSVLKRKFISRWRNLTDA-KTPNGYIGLNAYGFYAYDTVWLLA 238 (848)
Q Consensus 160 ~wi~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~f~~~~~~~~~~-~~~~~~~~~~~~~~~~YDAv~~~a 238 (848)
+||.++......+. ....+...|++++.++.++.+.+++|.++|+++++. +++.....++.+++++||||+++|
T Consensus 210 ~~i~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~la 284 (823)
T 3kg2_A 210 HYIIANLGFTDGDL-----LKIQFGGAEVSGFQIVDYDDSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMT 284 (823)
T ss_dssp EEEECSSBSSSSCC-----SSSSSSBCEEEEEESSCTTSHHHHHHHHHHTTSCTTTSTTCCSSCCCHHHHHHHHHHHHHH
T ss_pred EEEEecccccccch-----HHhhcCCCCceEeeeecCCchHHHHHHHHHHhhcccccCCCCccccchhhHHHHHHHHHHH
Confidence 99999854333222 233445667999999999999999999999998863 333344457889999999999999
Q ss_pred HHHHHHHhcCCCccccCCCccccccCccccCcc--cccCChHHHHHHHHhccccccccceEeccCCCCCCCcEEEEEeec
Q 003093 239 RAINSFFKQGGNLSFSKDSRLSDIQGHLRLDSL--RIFNGGNLLRDSILQANMTGTAGPARFNSHGDLINPAYEIINVIG 316 (848)
Q Consensus 239 ~Al~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~g~~l~~~l~~~~f~G~tG~v~Fd~~g~~~~~~~~I~~~~~ 316 (848)
+|++++.+++.+...... +..|... .++.+|++|.++|++++|+|++|+++||++|++....|+|+++++
T Consensus 285 ~Al~~~~~~~~~~~~~~~--------~~~c~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~I~~~~~ 356 (823)
T 3kg2_A 285 EAFRNLRKQRIEISRRGN--------AGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKT 356 (823)
T ss_dssp HHHHHHHTTTCCCCCSSC--------CCCTTCSSCCCCTHHHHHHHHHTTCCCEETTEECCBCSSSCBCSCEEEEEEECS
T ss_pred HHHHHHHhhccccccCCC--------CCCccCCCCCcccchHHHHHHHHhcccCCcccCeEECCCCcccccEEEEEEEcC
Confidence 999999876544321111 2234433 456679999999999999999999999999999889999999999
Q ss_pred ccEEEEEEeeCCCCCceecCCcccCCCCCCCCCccccceeEeCCCccccCCceeecCCCceEEEEecCCCCccceEE---
Q 003093 317 TGYRRIGYWSNYSGLSVVRPETLYSKPPNRSSSNQRLYSVIWPGQTTQKPRGWVFPNNGRHLRIGVPNRVSFREFVS--- 393 (848)
Q Consensus 317 ~~~~~Vg~w~~~~gl~~~~~~~~~~~~~~~~~~~~~l~~i~Wpg~~~~~p~~~~~~~~g~~lrv~v~~~~~~~p~~~--- 393 (848)
++++.||+|++..|+....+. ....+|++|+|++...+||..+..
T Consensus 357 ~g~~~vg~w~~~~g~~~~~~~--------------------------------~~~~~~~~l~v~~~~~~P~~~~~~~~~ 404 (823)
T 3kg2_A 357 NGPRKIGYWSEVDKMVLTEDD--------------------------------TSGLEQKTVVVTTILESPYVMMKANHA 404 (823)
T ss_dssp SCEEEEEEEETTTEEEECCCC--------------------------------CSSCCCCCEEEEECCCTTTSEECTTGG
T ss_pred CCCeeEEEEcCCCCceeccCc--------------------------------ccccCCCEEEEEEecCCCcEEEecCcc
Confidence 999999999998876532110 012468899999985444432211
Q ss_pred -eCCCcceeeeeHHHHHHHHHhCCCCcceEEee---CCCC-CCCCChhHHHHHHhcCeeeEEeeceeeecCceeeeeecc
Q 003093 394 -VKGSEMTSGFCIDVFTAAINLLPYAVPYKLIP---FGDG-HNNPSCTELVRLITAGVYDAAVGDIAIITNRTKMADFTQ 468 (848)
Q Consensus 394 -~~~~~~~~G~~~dll~~i~~~l~~~~~~~~~~---~~~~-~~n~s~~~~i~~l~~g~~D~~~~~~~~t~~R~~~~dfs~ 468 (848)
.++++++.|||+||++++++++||+++++.++ +|.. ..||+|++++++|.+|++|++++++++|++|.+.+|||.
T Consensus 405 ~~~~~~~~~G~~~dl~~~~a~~l~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~~~D~~~~~~~~t~~R~~~~dfs~ 484 (823)
T 3kg2_A 405 ALAGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSK 484 (823)
T ss_dssp GCCGGGGEESHHHHHHHHHHHHHTCCEEEEECSSCCCCCBCTTTCCBCHHHHHHHTTSCSEECSCCBCCHHHHTTEEECS
T ss_pred ccCCCCceEEEHHHHHHHHHHHcCCcEEEEEccCCcccccCCCCCchhhHHHhhccccCcEEecceecchhheeeEEecc
Confidence 14678999999999999999999998887776 3332 257899999999999999999999999999999999999
Q ss_pred cccccceEEEEeccC-CCCCcccccccCchhhHHHHHHHHHHHHHHhhhhhcccCCCCCCCC--------------CCCc
Q 003093 469 PYIESGLVVVAPVRK-LDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPP--------------KRQV 533 (848)
Q Consensus 469 p~~~~~~~~v~~~~~-~~~~~~~fl~PF~~~vW~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--------------~~~~ 533 (848)
||+..++++++|++. ..++++.|++||++.+|++++++++++++++|+++|..+.+|+.+. ..++
T Consensus 485 py~~~~~~~~v~~~~~~~~~~~~fl~Pf~~~vW~~i~~~~~~~~~~l~~~~~~~p~~w~~~~~~~~~~~~~~~~~~~~~~ 564 (823)
T 3kg2_A 485 PFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHTEEFEDGRETQSSESTNEFGI 564 (823)
T ss_dssp CSEEECEEEEEECCCCCCCCGGGTTTTSCHHHHHHHHHHHHHHHTTGGGTC-----------------------CHHHHH
T ss_pred chhhCCEEEEEECCCcccccchHhhcCCchhHHHHHHHHHHHHHHHHHHHHhcChhhccCcccccccccccccccccccH
Confidence 999999999999887 4568999999999999999999999999999999998765554322 1237
Q ss_pred chhhhhHHHHhhhcCcc-ccccchhHHHHHHHHhhhhhhhccccceeeeeeeeccccCCCCChHHhhcCCC-CeeEEeCc
Q 003093 534 VTIFWFSFSTMFFAHKE-KTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNY-PIGYQVNS 611 (848)
Q Consensus 534 ~~~~~~~~~~l~~~~~~-~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~s~~-~i~~~~~s 611 (848)
.+++|++++++++++.. .|++.++|+++++|+|+++|++++|||+|+|+||++++.++|+|++||.+++. ++++..++
T Consensus 565 ~~~~~~~~~~l~~~g~~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~I~s~~dL~~~~~i~~~~~~~~ 644 (823)
T 3kg2_A 565 FNSLWFSLGAFMQQGADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLSKQTEIAYGTLDSG 644 (823)
T ss_dssp HHHHHHTTTTSCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSHHHHHCCSSEEECBSSS
T ss_pred HHHHHHHHHHHHhcCCCcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCHHHHhhCCCeeEEEEeCC
Confidence 79999999999988744 79999999999999999999999999999999999999999999999997653 46666677
Q ss_pred hHHHHHHhhhCCCc-c----------CcccCCCHHHHHHHhhcCCCCCceEEEEccHHHHHHHHhcC-CcEEEeCCcccc
Q 003093 612 FARNYLVDELNIDE-S----------RLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTR-CEFSIVGQVFTK 679 (848)
Q Consensus 612 ~~~~~l~~~~~~~~-~----------~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~-~~l~~~~~~~~~ 679 (848)
....++.+. +... . ..+.+.+.+++++.+.+. ++.+|++.+.+.++|+.+++ |+++.+++.+..
T Consensus 645 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~~~~y~~~~~~c~l~~v~~~~~~ 720 (823)
T 3kg2_A 645 STKEFFRRS-KIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKS---KGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDS 720 (823)
T ss_dssp HHHHHHHHC-CCHHHHHHHHHHHHCSSCCCBSSHHHHHHHHHTT---TTSEEEEEEHHHHHHHHTSTTCCEEEESCCSSC
T ss_pred cHHHHHHhc-cchHHHHHHHHHHhcCCccccCCHHHHHHHHhcc---CCceEEEechHHHHHHHhcCCCceEEccccccc
Confidence 777777542 1110 0 112346889999999731 56789999999999988876 999999999999
Q ss_pred CCceeeecCCCCchHHHHHHHHhhhccCchHHHHHhhcc-cCCCCCCCCC--ccccceecccchhHHHHHHHHHHHHHHH
Q 003093 680 NGWGFAFPRDSPLAVDISTAILKLSENGDLQRIHDKWLL-RSACSSQGAK--LDVDRLQLKSFSGLYLLCGLACLLALFI 756 (848)
Q Consensus 680 ~~~~~~~~k~spl~~~in~~i~~l~e~G~~~~~~~kw~~-~~~c~~~~~~--~~~~~l~l~~~~g~f~il~~g~~la~~v 756 (848)
.++++++||||||++.||++|++|.|+|++++|+++|+. ...|...... ....+|+++++.|+|+++++|+++|+++
T Consensus 721 ~~~~~~~~k~spl~~~~~~~il~l~e~G~~~~~~~~w~~~~~~c~~~~~~~~~~~~~L~l~~l~g~f~il~~g~~la~~v 800 (823)
T 3kg2_A 721 KGYGIATPKGSSLGTPVNLAVLKLSEQGLLDKLKNKWWYDKGECGAKDSGSKEKTSALSLSNVAGVFYILVGGLGLAMLV 800 (823)
T ss_dssp EEECCEEETTCSSHHHHHHHHHHHHHTTHHHHHHHHHHTTSCSCSSTTTSTTTCCCSCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred cceeEeecCCChHHHHHHHHHHHHHhCCcHHHHHHhhCcCCCCCCCCCccccccCCccchhhhhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999996 7789876433 3567899999999999999999999999
Q ss_pred HHHHHHHHhhccCC
Q 003093 757 YLMQIVHQFSRHYP 770 (848)
Q Consensus 757 f~~e~~~~~~~~~~ 770 (848)
|++|++|++++.++
T Consensus 801 f~~E~~~~~~~~~~ 814 (823)
T 3kg2_A 801 ALIEFCYKSRAEAK 814 (823)
T ss_dssp HHHHHHHC------
T ss_pred HHHHHHHHcchhhh
Confidence 99999998776654
No 2
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A
Probab=100.00 E-value=2.9e-42 Score=381.41 Aligned_cols=310 Identities=15% Similarity=0.294 Sum_probs=259.9
Q ss_pred CCCeEEEEccCCchhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEeccCChHHHHHHHHHHHHHcCcEEEEEEEEc
Q 003093 2 EGQTVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVD 81 (848)
Q Consensus 2 ~~~V~aiIGp~~S~~~~ava~i~~~~~vP~Is~~at~p~ls~~~~p~f~r~~p~d~~q~~ai~~~~~~~~w~~vaii~~d 81 (848)
+++|+|||||.+|..+.++++++++++||+|++++ |.++ ..+|.||+.|+ |+.++++++++|||++|++|| |
T Consensus 67 ~~~V~aiiG~~~S~~~~a~~~i~~~~~iP~Is~s~--~~~~--~~~~~~~~~p~---~~~a~~~~~~~~gw~~vaii~-d 138 (389)
T 3o21_A 67 SRGVYAIFGFYDQMSMNTLTSFCGALHTSFVTPSF--PTDA--DVQFVIQMRPA---LKGAILSLLSYYKWEKFVYLY-D 138 (389)
T ss_dssp TTTCSCEEECCCTTTHHHHHHHHHHHTCCEEECSC--CCSS--CCSSEEECSCC---SHHHHHHHHHHHTCCEEEEEE-C
T ss_pred hcCcEEEEeCCChhHHHHHHHHhccCCCceeecCC--CCcc--CCceEEEEccC---HHHHHHHHHHhCCCCEEEEEE-c
Confidence 46899999999999999999999999999998754 5443 34566666676 899999999999999999999 8
Q ss_pred CCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccCCcHHHHHHHHHHcCCCCCCeEE
Q 003093 82 DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVW 161 (848)
Q Consensus 82 d~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~~w 161 (848)
++||....+.|.+++++.|+||+..+.++.. +..|++.+|++|+++++|+||++++.+++..++++|+++||+.++|+|
T Consensus 139 ~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~-~~~d~~~~l~~ik~~~~~vii~~~~~~~~~~i~~qa~~~g~~~~~~~~ 217 (389)
T 3o21_A 139 TERGFSVLQAIMEAAVQNNWQVTARSVGNIK-DVQEFRRIIEEMDRRQEKRYLIDCEVERINTILEQVVILGKHSRGYHY 217 (389)
T ss_dssp STTCSHHHHHHHHHHHHTTCEEEEEECTTCC-CTHHHHHHHHHHHTTTCCEEEEESCHHHHHHHHHHHHHHCSCSTTCEE
T ss_pred CcHHHHHHHHHHHHhhcCCCeEEEEEecCCC-CcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCcccCCeEE
Confidence 8999999999999999999999998877542 346999999999999999999999999999999999999999999999
Q ss_pred EecCccccccCCCCCCCcccccccceeEEEEEecCCchhHHHHHHHHHhhccCC-CCCCCCCCCcchhhhhhHHHHHHHH
Q 003093 162 IATSWLSTALDTNSPFPSDVMDDIQGVLTLRTYTPDSVLKRKFISRWRNLTDAK-TPNGYIGLNAYGFYAYDTVWLLARA 240 (848)
Q Consensus 162 i~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~f~~~~~~~~~~~-~~~~~~~~~~~~~~~YDAv~~~a~A 240 (848)
|.++.+....+. ........|++++..+.+++|.+++|+++|+++++.+ ++.+...++.+++++||||+++|+|
T Consensus 218 i~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a~A 292 (389)
T 3o21_A 218 MLANLGFTDILL-----ERVMHGGANITGFQIVNNENPMVQQFIQRWVRLDEREFPEAKNAPLKYTSALTHDAILVIAEA 292 (389)
T ss_dssp EECCTTGGGCCC-----HHHHHTTCEEEEEESCCTTCHHHHHHHHHHTTSCTTTSTTSSSSCCCHHHHHHHHHHHHHHHH
T ss_pred EEccCCcccccH-----HHHhcCCcceEEEEEecCCChhHHHHHHHHHhccccccCCCCCCccchhHHHHHHHHHHHHHH
Confidence 998855443332 2233456789999888999999999999999988642 2222235678999999999999999
Q ss_pred HHHHHhcCCCccccCCCccccccCcccc--CcccccCChHHHHHHHHhccccccccceEeccCCCCCCCcEEEEEeeccc
Q 003093 241 INSFFKQGGNLSFSKDSRLSDIQGHLRL--DSLRIFNGGNLLRDSILQANMTGTAGPARFNSHGDLINPAYEIINVIGTG 318 (848)
Q Consensus 241 l~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~g~~l~~~l~~~~f~G~tG~v~Fd~~g~~~~~~~~I~~~~~~~ 318 (848)
++++..++..+.+... ..+| +...+|.+|++|+++|++++|+|++|+++||++|++....|+|+++.+++
T Consensus 293 l~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~Fd~~G~~~~~~~~i~~~~~~g 364 (389)
T 3o21_A 293 FRYLRRQRVDVSRRGS--------AGDCLANPAVPWSQGIDIERALKMVQVQGMTGNIQFDTYGRRTNYTIDVYEMKVSG 364 (389)
T ss_dssp HHHHHHTTCCCC-------------CCSCSSSCCCTTTTHHHHHHHHTCCEEETTEEECBCTTSBBCSCCEEEEEEETTE
T ss_pred HHHHHhhCcccccCCC--------CCcCCCCCCCCCCCcHHHHHHHHhCcccccceeeeeCCCCCcccceEEEEEEcCCC
Confidence 9999875443321110 2234 34567888999999999999999999999999999888899999999999
Q ss_pred EEEEEEeeCCCCCce
Q 003093 319 YRRIGYWSNYSGLSV 333 (848)
Q Consensus 319 ~~~Vg~w~~~~gl~~ 333 (848)
++.||+|++.+||+.
T Consensus 365 ~~~VG~w~~~~g~~~ 379 (389)
T 3o21_A 365 SRKAGYWNEYERFVP 379 (389)
T ss_dssp EEEEEEEETTTEEEC
T ss_pred ceeeeEEcCCCCccc
Confidence 999999999999875
No 3
>4gpa_A Glutamate receptor 4; PBP fold, ligand-gated ION channel, ION transport, transmembrane AMPA receptor regulating proteins, cornichons, ckamp44; HET: NAG; 2.25A {Rattus norvegicus}
Probab=100.00 E-value=4.2e-42 Score=381.39 Aligned_cols=316 Identities=18% Similarity=0.297 Sum_probs=269.4
Q ss_pred CCCeEEEEccCCchhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEeccCChHHHHHHHHHHHHHcCcEEEEEEEEc
Q 003093 2 EGQTVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVD 81 (848)
Q Consensus 2 ~~~V~aiIGp~~S~~~~ava~i~~~~~vP~Is~~at~p~ls~~~~p~f~r~~p~d~~q~~ai~~~~~~~~w~~vaii~~d 81 (848)
+++|+|||||.+|.++.+++++++.++||+|+++++.+.. .+|++++|+.+ ++++++++++|||++|++||++
T Consensus 67 ~~~V~aiiG~~~S~~~~~v~~i~~~~~ip~is~~~~~~~~--~~~~~~~~~~~-----~~a~~~l~~~~~w~~vaii~~~ 139 (389)
T 4gpa_A 67 SRGVFAIFGLYDKRSVHTLTSFCSALHISLITPSFPTEGE--SQFVLQLRPSL-----RGALLSLLDHYEWNCFVFLYDT 139 (389)
T ss_dssp HTTCSEEEECCCTTTHHHHHHHHHHTTCEEEECSCCCSSC--CSSEEECSCCC-----HHHHHHHHHHTTCCEEEEEECS
T ss_pred hcCCEEEEeCCccHHHHHHHHHHHHhCCCceecccccccc--ccCCccccCCH-----HHHHHHHHHHcCCcEEEEEEec
Confidence 4789999999999999999999999999999987765433 45777776543 4689999999999999999977
Q ss_pred CCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccCCcHHHHHHHHHHcCCCCCCeEE
Q 003093 82 DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVW 161 (848)
Q Consensus 82 d~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~~w 161 (848)
++++ ...+.+.+.+++.|++|+..+.++. ...|+..+|++++..++|+||+.++..++..++++|+++||+.++|+|
T Consensus 140 d~~~-~~~~~~~~~~~~~g~~v~~~~~~~~--~~~d~~~~l~~i~~~~~~vIv~~~~~~~~~~il~~a~~~g~~~~~~~~ 216 (389)
T 4gpa_A 140 DRGY-SILQAIMEKAGQNGWHVSAICVENF--NDVSYRQLLEELDRRQEKKFVIDCEIERLQNILEQIVSVGKHVKGYHY 216 (389)
T ss_dssp TTCS-HHHHHHHHHHHTTTCEEEEEECTTC--CHHHHHHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHTCSBTTCEE
T ss_pred chhh-HHHHHHHHHHHhcCceEEEEeecCC--cchhHHHHHHHhhccCCcEEEEEechhHHHHHHHHHHHhCCCCCceEE
Confidence 7665 4567788999999999998876664 558999999999999999999999999999999999999999999999
Q ss_pred EecCccccccCCCCCCCcccccccceeEEEEEecCCchhHHHHHHHHHhhccCCCCCCCCCCCcchhhhhhHHHHHHHHH
Q 003093 162 IATSWLSTALDTNSPFPSDVMDDIQGVLTLRTYTPDSVLKRKFISRWRNLTDAKTPNGYIGLNAYGFYAYDTVWLLARAI 241 (848)
Q Consensus 162 i~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~YDAv~~~a~Al 241 (848)
+.++++...... ........|+.++..+.+..+.+++|.++|++.+..........++.+++++||||+++|+|+
T Consensus 217 i~~~~~~~~~~~-----~~~~~~~~~i~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~YDAV~~~A~Al 291 (389)
T 4gpa_A 217 IIANLGFKDISL-----ERFIHGGANVTGFQLVDFNTPMVTKLMDRWKKLDQREYPGSETPPKYTSALTYDGVLVMAETF 291 (389)
T ss_dssp EECSSBGGGSCC-----HHHHHHBCEEEEEECSCTTSHHHHHHHHHHTTSCTTTSTTTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred EEeCccccchhh-----hhhhhcccceEEEEeecCCChHHHHHHHHHHHHhhhhcccCCCChhHHHHHHHHHHHHHHHHH
Confidence 999887665443 445566788999999999999999999999998864444444568899999999999999999
Q ss_pred HHHHhcCCCccccCCCccccccCccccCcccccCChHHHHHHHHhccccccccceEeccCCCCCCCcEEEEEeecccEEE
Q 003093 242 NSFFKQGGNLSFSKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQANMTGTAGPARFNSHGDLINPAYEIINVIGTGYRR 321 (848)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~v~Fd~~g~~~~~~~~I~~~~~~~~~~ 321 (848)
+++.++........ ..+.+.|....+|++|..|+++|++++|+|+||+|+||++|+|....|+|+|++++++++
T Consensus 292 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~G~~l~~~l~~v~f~G~tG~v~Fd~~G~r~~~~~~I~~l~~~~~~~ 365 (389)
T 4gpa_A 292 RSLRRQKIDISRRG------NAGDCLANPAAPWGQGIDMERTLKQVRIQGLTGNVQFDHYGRRVNYTMDVFELKSTGPRK 365 (389)
T ss_dssp HHHHHTTCCCCCTT------CCCCTTCSSCCCCTTHHHHHHHHHTCEEEETTEEEEBCTTSCBCSCEEEEEEEETTEEEE
T ss_pred HHHHhhcccccccC------CccccccCCCcccchHHHHHHHHHhCceecCceeEEECCCCCCCCCEEEEEEEECCEEEE
Confidence 99988765432111 122567778889999999999999999999999999999999988899999999999999
Q ss_pred EEEeeCCCCCceecCCc
Q 003093 322 IGYWSNYSGLSVVRPET 338 (848)
Q Consensus 322 Vg~w~~~~gl~~~~~~~ 338 (848)
||+|++..||.+..|++
T Consensus 366 VG~W~~~~gl~~~~~~t 382 (389)
T 4gpa_A 366 VGYWNDMDKLVLIQDRT 382 (389)
T ss_dssp EEEEETTTEEEECCC--
T ss_pred EEEEECCCCeEECCCCc
Confidence 99999999998876643
No 4
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A
Probab=100.00 E-value=2.5e-42 Score=380.69 Aligned_cols=311 Identities=20% Similarity=0.318 Sum_probs=245.2
Q ss_pred CCCeEEEEccCCchhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEeccCChHHHHHHHHHHHHHcCcEEEEEEEEc
Q 003093 2 EGQTVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVD 81 (848)
Q Consensus 2 ~~~V~aiIGp~~S~~~~ava~i~~~~~vP~Is~~at~p~ls~~~~p~f~r~~p~d~~q~~ai~~~~~~~~w~~vaii~~d 81 (848)
+++|+|||||.+|..+.++++++++++||+|+++++ . ...++|+||+.|+ |+.++++++++|||++|++|| |
T Consensus 58 ~~~V~aiiG~~~S~~~~av~~~~~~~~ip~is~~~~--~--~~~~~~~~~~~p~---~~~a~~~~~~~~gw~~vaii~-d 129 (376)
T 3hsy_A 58 SRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPSFP--T--DGTHPFVIQMRPD---LKGALLSLIEYYQWDKFAYLY-D 129 (376)
T ss_dssp HTTCSEEEECCCTTTHHHHHHHHHHHTCEEEECSCC--C--CSCCTTEEECSCC---CHHHHHHHHHHTTCCEEEEEE-C
T ss_pred hcCcEEEECCCchhHHHHHHHHhccCcCceeecCCC--C--cccCCceEEeCcc---HHHHHHHHHHhcCCCEEEEEE-e
Confidence 458999999999999999999999999999998763 2 3356899999886 899999999999999999999 8
Q ss_pred CCCccchHHHHHHHHhccCcEEEEeeecCCC--CChHHHHHHHHHHhcCCCeEEEEEccCCcHHHHHHHHHHcCCCCCCe
Q 003093 82 DDHGRNGIAALGDTLAAKRCRISFKAPLSVE--ATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGY 159 (848)
Q Consensus 82 d~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~--~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~ 159 (848)
++||....+.|.+++++.|++|+..+.++.. .++.|++.+|++|++.++|+|+++++...+..++++|+++||+.++|
T Consensus 130 ~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~qa~~~g~~~~~~ 209 (376)
T 3hsy_A 130 SDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDKKDETYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKGY 209 (376)
T ss_dssp STTCSHHHHHHHHHHHHHTCEEEEEECTTCC--------------------CEEEEESCHHHHHHHHHHHHHHTSSGGGC
T ss_pred CchhHHHHHHHHHHhhhcCCeEEEEEeccccccccchhHHHHHHHHhhCCCeEEEEECCHHHHHHHHHHHHHcccCCCCc
Confidence 9999999999999999999999988766543 23589999999999999999999999999999999999999998899
Q ss_pred EEEecCccccccCCCCCCCcccccccceeEEEEEecCCchhHHHHHHHHHhhccC-CCCCCCCCCCcchhhhhhHHHHHH
Q 003093 160 VWIATSWLSTALDTNSPFPSDVMDDIQGVLTLRTYTPDSVLKRKFISRWRNLTDA-KTPNGYIGLNAYGFYAYDTVWLLA 238 (848)
Q Consensus 160 ~wi~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~f~~~~~~~~~~-~~~~~~~~~~~~~~~~YDAv~~~a 238 (848)
+||.+++.....+. ........+++++..+.+++|.+++|.++|+++|+. +++.+...|+.+++++||||+++|
T Consensus 210 ~~i~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~aa~~YDav~~la 284 (376)
T 3hsy_A 210 HYIIANLGFTDGDL-----LKIQFGGANVSGFQIVDYDDSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMT 284 (376)
T ss_dssp EEEECSSBTTSTTG-----GGSCCTTCEEEEEESCCTTSHHHHHHHHHHTTSCTTTSTTCSCSSCCHHHHHHHHHHHHHH
T ss_pred EEEEcCCCccccch-----HHhhcCCcCceEEEEecCCchHHHHHHHHHHhccccccCCCCCcccchhHHHHHHHHHHHH
Confidence 99999853322221 112223345888888888899999999999999863 222223358899999999999999
Q ss_pred HHHHHHHhcCCCccccCCCccccccCcccc--CcccccCChHHHHHHHHhccccccccceEeccCCCCCCCcEEEEEeec
Q 003093 239 RAINSFFKQGGNLSFSKDSRLSDIQGHLRL--DSLRIFNGGNLLRDSILQANMTGTAGPARFNSHGDLINPAYEIINVIG 316 (848)
Q Consensus 239 ~Al~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~g~~l~~~l~~~~f~G~tG~v~Fd~~g~~~~~~~~I~~~~~ 316 (848)
+|++++.+++...... .....| +...+|.+|++|+++|++++|+|++|+++||++|++....|+|+++.+
T Consensus 285 ~Ai~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~i~~~~~ 356 (376)
T 3hsy_A 285 EAFRNLRKQRIEISRR--------GNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKT 356 (376)
T ss_dssp HHHHHHHHTTCCCSCC--------CCCCCTTCSSCCCCHHHHHHHHHHHHCCEEETTEEECBCTTSBBCSCEEEEEEEET
T ss_pred HHHHHHHhcCCccccC--------CCCCccCCCCCCCcCCcHHHHHHHHhcCcCCCccceeECCCCCCccceEEEEEecC
Confidence 9999998764432211 012244 556677789999999999999999999999999999889999999999
Q ss_pred ccEEEEEEeeCCCCCce
Q 003093 317 TGYRRIGYWSNYSGLSV 333 (848)
Q Consensus 317 ~~~~~Vg~w~~~~gl~~ 333 (848)
++++.||+|++.+||+.
T Consensus 357 ~g~~~VG~w~~~~g~~~ 373 (376)
T 3hsy_A 357 NGPRKIGYWSEVDKMVV 373 (376)
T ss_dssp TEEEEEEEEETTTEEEE
T ss_pred CCceEEEEEcCCCCcee
Confidence 99999999999998764
No 5
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus}
Probab=100.00 E-value=6.1e-41 Score=370.78 Aligned_cols=314 Identities=21% Similarity=0.296 Sum_probs=260.1
Q ss_pred CCCeEEEEccCCchhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEeccCChHHHHHHHHHHHHHcCcEEEEEEEEc
Q 003093 2 EGQTVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVD 81 (848)
Q Consensus 2 ~~~V~aiIGp~~S~~~~ava~i~~~~~vP~Is~~at~p~ls~~~~p~f~r~~p~d~~q~~ai~~~~~~~~w~~vaii~~d 81 (848)
+++|+|||||.+|..+.++++++++++||+|+++ +|.++ ..+|+||+.|+ |+.+++++++++||++|++|| |
T Consensus 65 ~~~V~aiiG~~~S~~~~a~~~~~~~~~iP~is~~--~~~~~--~~~~~~~~~p~---~~~a~~~~~~~~g~~~v~ii~-d 136 (384)
T 3saj_A 65 SKGVYAIFGFYERRTVNMLTSFCGALHVCFITPS--FPVDT--SNQFVLQLRPE---LQEALISIIDHYKWQTFVYIY-D 136 (384)
T ss_dssp HTTCSCEEECCCHHHHHHHHHHHHHHTCCEEECS--CCCSS--CCTTEEECSCC---CHHHHHHHHHHTTCCEEEEEE-C
T ss_pred hcCeEEEECCCCHHHHHHHHHHhccCCCCeEecc--ccCcC--ccCceEEeccc---HHHHHHHHHHHCCCcEEEEEE-e
Confidence 3589999999999999999999999999999984 45554 45677888777 899999999999999999999 7
Q ss_pred CCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccCCcHHHHHHHHHHcCCCCCCeEE
Q 003093 82 DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVW 161 (848)
Q Consensus 82 d~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~~w 161 (848)
++||....+.|.+.+++.|+||+..+.++. +..|+..+|.+|+++++|+|+++++..++..++++|+++||+.++|+|
T Consensus 137 ~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~--~~~d~~~~l~~ik~~~~~vii~~~~~~~~~~~~~qa~~~g~~~~~~~~ 214 (384)
T 3saj_A 137 ADRGLSVLQRVLDTAAEKNWQVTAVNILTT--TEEGYRMLFQDLEKKKERLVVVDCESERLNAILGQIVKLEKNGIGYHY 214 (384)
T ss_dssp STTCSHHHHHHHHHHHHHTCEEEEEEGGGC--CHHHHHHTTTTCCSCSEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEE
T ss_pred CchhHHHHHHHHHHhhhcCceEEEEEeccC--CchhHHHHHHHHhccCCcEEEEEcCHHHHHHHHHHHHHcCCCCCCcEE
Confidence 799999999999999999999998875443 558999999999999999999999999999999999999999889999
Q ss_pred EecCccccccCCCCCCCcccccccceeEEEEEecCCchhHHHHHHHHHhhccC-CCCCCCCCCCcchhhhhhHHHHHHHH
Q 003093 162 IATSWLSTALDTNSPFPSDVMDDIQGVLTLRTYTPDSVLKRKFISRWRNLTDA-KTPNGYIGLNAYGFYAYDTVWLLARA 240 (848)
Q Consensus 162 i~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~f~~~~~~~~~~-~~~~~~~~~~~~~~~~YDAv~~~a~A 240 (848)
|+++......+. ........|++++.++.+++|.+++|.++|+++++. .++.....++.+++++||||+++++|
T Consensus 215 i~~~~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~~~F~~~~~~~~~~~~p~~~~~~~~~~aa~~YDav~~~a~A 289 (384)
T 3saj_A 215 ILANLGFMDIDL-----NKFKESGANVTGFQLVNYTDTIPARIMQQWRTSDSRDHTRVDWKRPKYTSALTYDGVKVMAEA 289 (384)
T ss_dssp EESSSCGGGSCH-----HHHHHTTCCEEEEECCCTTSHHHHHHHHHHHHHHHHC------CCCCHHHHHHHHHHHHHHHH
T ss_pred EEECCCcccccH-----HHhhCCCcceEEEEeecCCChHHHHHHHHHHhcCccccCCCCCCccchhHHHHHHHHHHHHHH
Confidence 999854332221 223345567999999999999999999999999863 22222235678899999999999999
Q ss_pred HHHHHhcCCCccccCCCccccccCccccCcc--cccCChHHHHHHHHhccccccccceEeccCCCCCCCcEEEEEeeccc
Q 003093 241 INSFFKQGGNLSFSKDSRLSDIQGHLRLDSL--RIFNGGNLLRDSILQANMTGTAGPARFNSHGDLINPAYEIINVIGTG 318 (848)
Q Consensus 241 l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~g~~l~~~l~~~~f~G~tG~v~Fd~~g~~~~~~~~I~~~~~~~ 318 (848)
++++.+.+..+.... . ...|... .+|.+|++|+++|++++|+|++|+++||++|++....|+|+++++++
T Consensus 290 l~~~~~~~~~~~~~~------~--~~~c~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~i~~~~~~g 361 (384)
T 3saj_A 290 FQSLRRQRIDISRRG------N--AGDCLANPAVPWGQGIDIQRALQQVRFEGLTGNVQFNEKGRRTNYTLHVIEMKHDG 361 (384)
T ss_dssp HHHHHHTTCCCCCCC------S--CCCSCCBSCCCCTTHHHHHHHHHSCCEEETTEEECBCTTSBBCSCCEEEEEEETTE
T ss_pred HHHHHhhccceecCC------C--CCCCCCCCCCCcCCcHHHHHHHHhCcCcccceeeEeCCCCCcccceEEEEEeccCC
Confidence 999987654332110 1 2245433 45677999999999999999999999999999988999999999999
Q ss_pred EEEEEEeeCCCCCceecCCc
Q 003093 319 YRRIGYWSNYSGLSVVRPET 338 (848)
Q Consensus 319 ~~~Vg~w~~~~gl~~~~~~~ 338 (848)
++.||+|++..|+++..++.
T Consensus 362 ~~~VG~W~~~~gl~~~~~~~ 381 (384)
T 3saj_A 362 IRKIGYWNEDDKFVPAALEV 381 (384)
T ss_dssp EEEEEEEETTTEEEECCC--
T ss_pred cceeEEEcCCCCccccCccc
Confidence 99999999999988766543
No 6
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*
Probab=100.00 E-value=1.8e-40 Score=368.83 Aligned_cols=311 Identities=19% Similarity=0.271 Sum_probs=261.3
Q ss_pred CCCeEEEEccCCchhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEeccCChHHHHHHHHHHHHHcCcEEEEEEEEc
Q 003093 2 EGQTVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVD 81 (848)
Q Consensus 2 ~~~V~aiIGp~~S~~~~ava~i~~~~~vP~Is~~at~p~ls~~~~p~f~r~~p~d~~q~~ai~~~~~~~~w~~vaii~~d 81 (848)
+++|+|||||.+|..+.++++++++++||+|+++++++.+++ +.+||||+.|++..|+.+++++++++||++|++|| |
T Consensus 69 ~~~V~aiiG~~~S~~~~a~~~~~~~~~ip~is~~~~~~~l~~-~~~~~~r~~~~~~~~~~~~~~~~~~~g~~~v~ii~-d 146 (395)
T 3h6g_A 69 SLGVAAIFGPSHSSSANAVQSICNALGVPHIQTRWKHQVSDN-KDSFYVSLYPDFSSLSRAILDLVQFFKWKTVTVVY-D 146 (395)
T ss_dssp HHCCSCEECCSSHHHHHHHHHHHHHTTCCEEECSCCCCCTTC-CCCSEEEEEECHHHHHHHHHHHHHHTTCSEEEEEE-S
T ss_pred hcCcEEEECCCChhHHHHHHHHHhcCCCCeEeeccCcccccc-cCceEEEecCCHHHHHHHHHHHHHHCCCeEEEEEE-E
Confidence 358999999999999999999999999999999999999976 46899999999999999999999999999999998 7
Q ss_pred CCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccCCcHHHHHHHHHHcCCCCCCeEE
Q 003093 82 DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVW 161 (848)
Q Consensus 82 d~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~~w 161 (848)
++||....+.+.+.+++.|++|+... ++.+ ..|+..+|++|+++++|+|++++...++..++++|+++||+.+.|+|
T Consensus 147 ~~~g~~~~~~~~~~~~~~g~~v~~~~-~~~~--~~d~~~~l~~i~~~~~~vi~~~~~~~~~~~~~~qa~~~gl~~~~~~~ 223 (395)
T 3h6g_A 147 DSTGLIRLQELIKAPSRYNLRLKIRQ-LPAD--TKDAKPLLKEMKRGKEFHVIFDCSHEMAAGILKQALAMGMMTEYYHY 223 (395)
T ss_dssp STHHHHHTHHHHTGGGTSSCEEEEEE-CCSS--GGGGHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCSTTCEE
T ss_pred ChhHHHHHHHHHHhhhcCCceEEEEE-eCCC--chhHHHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHccccCCceEE
Confidence 78999999999999999999999875 7654 48999999999999999999999999999999999999999999999
Q ss_pred EecCccccccCCCCCCCcccccccceeEEEEEecCCchhHHHHHHHHHhhccCC-CCC----CCCCCCcchhhhhhHHHH
Q 003093 162 IATSWLSTALDTNSPFPSDVMDDIQGVLTLRTYTPDSVLKRKFISRWRNLTDAK-TPN----GYIGLNAYGFYAYDTVWL 236 (848)
Q Consensus 162 i~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~f~~~~~~~~~~~-~~~----~~~~~~~~~~~~YDAv~~ 236 (848)
|.++......+.. .......++.++..+.++++..++|.++|++++... +.. ....++.+++++|||+++
T Consensus 224 i~~~~~~~~~~~~-----~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~p~~~~~~~~~~~~~~aa~~YDav~~ 298 (395)
T 3h6g_A 224 IFTTLDLFALDVE-----PYRYSGVNMTGFRILNTENTQVSSIIEKWSMERLQAPPKPDSGLLDGFMTTDAALMYDAVHV 298 (395)
T ss_dssp EECCTTGGGBCCT-----TTTTSCCEEEEEECSCTTSHHHHHHHHHHHHC------CCSSCBCTTCCCHHHHHHHHHHHH
T ss_pred EEecCceeEechH-----HhccCccceEEEEEecCCcHHHHHHHHHHHhcccccCcccCCCcCCCccchhHHHHHhHHHH
Confidence 9987543322221 111111235777778888999999999999876421 111 112357799999999999
Q ss_pred HHHHHHHHHhcCCCccccCCCccccccCccccCcccccCChHHHHHHHHhccccccccceEecc-CCCCCCCcEEEEEee
Q 003093 237 LARAINSFFKQGGNLSFSKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQANMTGTAGPARFNS-HGDLINPAYEIINVI 315 (848)
Q Consensus 237 ~a~Al~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~v~Fd~-~g~~~~~~~~I~~~~ 315 (848)
+++|++++.+... ..++|...+.|.++++|.++|++++|+|++|+++||+ +|++....|.|++++
T Consensus 299 ~a~Al~~a~~~~~--------------~~~~c~~~~~~~~~~~l~~al~~~~~~G~tG~i~fd~~~G~~~~~~~~i~~~~ 364 (395)
T 3h6g_A 299 VSVAVQQFPQMTV--------------SSLQCNRHKPWRFGTRFMSLIKEAHWEGLTGRITFNKTNGLRTDFDLDVISLK 364 (395)
T ss_dssp HHHHHHTCTTCCC--------------CCCCTTSCCCCTTHHHHHHHHHHCEEEETTEEEECCTTTSEECCCCEEEEEEE
T ss_pred HHHHHHhhhcCCC--------------cCCCCCCCCcCcccHHHHHHHhcCCCcCcceeeEecCCCCeecCCeEEEEEec
Confidence 9999998642211 1456777778888999999999999999999999998 999988899999999
Q ss_pred cccEEEEEEeeCCCCCceecC
Q 003093 316 GTGYRRIGYWSNYSGLSVVRP 336 (848)
Q Consensus 316 ~~~~~~Vg~w~~~~gl~~~~~ 336 (848)
+++++.||+|++..|+++..+
T Consensus 365 ~~~~~~vG~w~~~~g~~~~~~ 385 (395)
T 3h6g_A 365 EEGLEKIGTWDPASGLNMTES 385 (395)
T ss_dssp TTEEEEEEEEETTTEECCCC-
T ss_pred cCCceEEEEEcCCCCccccCC
Confidence 999999999999999876533
No 7
>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A
Probab=100.00 E-value=5.8e-40 Score=364.39 Aligned_cols=310 Identities=19% Similarity=0.293 Sum_probs=252.2
Q ss_pred CCCeEEEEccCCchh-HHHHHHhhccCCccEEecccCCCCCCCCCCCce--EeccCChHHHHHHHHHHHHHcCcEEEEEE
Q 003093 2 EGQTVAIIGPQDAVT-SHVVSHVANELQVPLLSFSATDPTLSSLQFPYF--VRTTQSDQYQMAAIAEIVDHYGWREVIAI 78 (848)
Q Consensus 2 ~~~V~aiIGp~~S~~-~~ava~i~~~~~vP~Is~~at~p~ls~~~~p~f--~r~~p~d~~q~~ai~~~~~~~~w~~vaii 78 (848)
+++|+|||||.+|+. +.++++++++++||+|++++++. ...++|+| ||+.|++..|+.+++++++++||++|++|
T Consensus 68 ~~~V~aiiG~~~S~~~~~a~~~i~~~~~ip~is~~a~~~--~~~~~~~~~~fr~~p~~~~~~~~~~~~~~~~g~~~vaii 145 (393)
T 3om0_A 68 PKGVVSVLGPSSSPASASTVSHICGEKEIPHIKVGPEET--PRLQYLRFASVSLYPSNEDVSLAVSRILKSFNYPSASLI 145 (393)
T ss_dssp GGCCSCEECCSSCHHHHHHHHHHHHHHTCCEEECSCCCC--C----CCSCCEESSCCHHHHHHHHHHHHHHTTSCCEEEE
T ss_pred hcCcEEEECCCCchhHHHHHHHHHhccCCCeEeccCCcC--ccccccccceEEecCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 468999999999965 57999999999999999988751 12568999 99999999999999999999999999999
Q ss_pred EEcCCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccCCcHHHHHHHHHHcCCCCCC
Q 003093 79 YVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTG 158 (848)
Q Consensus 79 ~~dd~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~~~~~a~~~g~~~~~ 158 (848)
|+|++||....+.+ +.+.+.|++|++.. ++ +..|++.+|++|+++++|+|++++...++..++++|+++||..++
T Consensus 146 ~~~~~~g~~l~~~~-~~~~~~g~~v~~~~-~~---~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~ 220 (393)
T 3om0_A 146 CAKAECLLRLEELV-RGFLISKETLSVRM-LD---DSRDPTPLLKEIRDDKVSTIIIDANASISHLVLRKASELGMTSAF 220 (393)
T ss_dssp ESSTTHHHHTHHHH-HHHHHSSSCEEEEE-CC----CCCSHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHHTTTTSTT
T ss_pred EeCchHHHHHHHHH-HhhhccCCeEEEEe-cC---CCCCHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCcccCC
Confidence 99999998876655 55778899997654 43 336899999999999999999999999999999999999999889
Q ss_pred eEEEecCccccccCCCCCCCcccccccceeEEEEEecCCchhHHHHHHHHHhhccCCCCC-CCCCCCcchhhhhhHHHHH
Q 003093 159 YVWIATSWLSTALDTNSPFPSDVMDDIQGVLTLRTYTPDSVLKRKFISRWRNLTDAKTPN-GYIGLNAYGFYAYDTVWLL 237 (848)
Q Consensus 159 ~~wi~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~-~~~~~~~~~~~~YDAv~~~ 237 (848)
|+||.+++.....+.. .......|++++..+.++.|.+++|.++|+++|++.... ....|+.+++++||||+++
T Consensus 221 ~~~i~~~~~~~~~~l~-----~~~~~~~~~~g~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~p~~~a~~~YDAv~~l 295 (393)
T 3om0_A 221 YKYILTTMDFPILHLD-----GIVEDSSNILGFSMFNTSHPFYPEFVRSLNMSWRENCEASTYPGPALSAALMFDAVHVV 295 (393)
T ss_dssp CEEEECCTTGGGCCCT-----TTCCSSCSEEEEECCCTTSTTHHHHHHHHHHHHTTTSCGGGCCSCCHHHHHHHHHHHHH
T ss_pred eEEEEecccccccchh-----hhhccCCcEEEEEEecCCccHHHHHHHHHHHHhhhhccCCCCCCCchHHHHHHhHHHHH
Confidence 9999998765443321 223456789999888888999999999999988732111 1124678999999999999
Q ss_pred HHHHHHHHhcCCCccccCCCccccccCccccCcccccCChHHHHHHHHhccccccccceEeccCCCCCCCcEEEEEeecc
Q 003093 238 ARAINSFFKQGGNLSFSKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQANMTGTAGPARFNSHGDLINPAYEIINVIGT 317 (848)
Q Consensus 238 a~Al~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~v~Fd~~g~~~~~~~~I~~~~~~ 317 (848)
++|++++.+... .. ....+|....+|.+|++|.++|++++|+|++|+++||++|++....|+|++++++
T Consensus 296 a~Al~~~~~~~~-~~----------~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~i~~~~~~ 364 (393)
T 3om0_A 296 VSAVRELNRSQE-IG----------VKPLACTSANIWPHGTSLMNYLRMVEYDGLTGRVEFNSKGQRTNYTLRILEKSRQ 364 (393)
T ss_dssp HHHHHHHTTTSC-CC----------CCCCCTTCCCCCTTHHHHHHHHTTCCEEETTEEECBCTTSCBCSCEEEEEEEETT
T ss_pred HHHHHHHhhccc-Cc----------CCCcCCCCCCcccCchHHHHHHHhCCCCCccceEEeCCCCcccceeEEEEEeccC
Confidence 999999854311 10 0134677777888899999999999999999999999999988899999999999
Q ss_pred cEEEEEEeeCCCCCcee
Q 003093 318 GYRRIGYWSNYSGLSVV 334 (848)
Q Consensus 318 ~~~~Vg~w~~~~gl~~~ 334 (848)
+++.||+|++..||++.
T Consensus 365 g~~~VG~w~~~~gl~~~ 381 (393)
T 3om0_A 365 GHREIGVWYSNRTLAMN 381 (393)
T ss_dssp EEEEEEEEECC------
T ss_pred CceEeeeEcCCCCcccc
Confidence 99999999999998765
No 8
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A*
Probab=100.00 E-value=9.5e-40 Score=367.69 Aligned_cols=303 Identities=19% Similarity=0.336 Sum_probs=255.1
Q ss_pred CCeEEEEccCCchhHHHHHHhhccCCccEEecccCCCCCCC-CCCCceEeccCChHHHHHHHHHHHHHcCcEEEEEEEEc
Q 003093 3 GQTVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSS-LQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVD 81 (848)
Q Consensus 3 ~~V~aiIGp~~S~~~~ava~i~~~~~vP~Is~~at~p~ls~-~~~p~f~r~~p~d~~q~~ai~~~~~~~~w~~vaii~~d 81 (848)
++|++||||.+|..+.++++++++++||+|+++++++.+++ .+|||+||+.|++..|+.+++++++++||++|++||+|
T Consensus 84 ~~v~aviG~~~S~~~~a~~~~~~~~~ip~is~~~~~~~l~~~~~~~~~fr~~~~~~~~~~~~~~~~~~~g~~~v~ii~~~ 163 (433)
T 4f11_A 84 PNHLMVFGGVCPSVTSIIAESLQGWNLVQLSFAATTPVLADKKKYPYFFRTVPSDNAVNPAILKLLKHYQWKRVGTLTQD 163 (433)
T ss_dssp CCCSEEEECCSHHHHHHHHHTHHHHTCEEEESSCCCGGGGCTTTCTTEEESSCCGGGHHHHHHHHHHHTTCCEEEEEEES
T ss_pred CceEEEECCCcchHHHHHHHHHHhcCceEEEcccCCccccccccCCceEEecCchHHHHHHHHHHHHHcCCcEEEEEEec
Confidence 48999999999999999999999999999999999999998 57999999999999999999999999999999999999
Q ss_pred CCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccCCcHHHHHHHHHHcCCCCCCeEE
Q 003093 82 DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVW 161 (848)
Q Consensus 82 d~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~~w 161 (848)
++||....+.|.+.+++.|++|+..+.++. |+..++++|+++++|+|++++...++..++++|+++||..++|+|
T Consensus 164 ~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~-----d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~~ 238 (433)
T 4f11_A 164 VQRFSEVRNDLTGVLYGEDIEISDTESFSN-----DPCTSVKKLKGNDVRIILGQFDQNMAAKVFCCAYEENMYGSKYQW 238 (433)
T ss_dssp SHHHHHHHHHHHHHSSSSSCEEEEEEEESS-----CCHHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHTTCCSTTCEE
T ss_pred chhhHHHHHHHHHHHHHcCceEEEEeccCc-----CHHHHHHHHhhCCCeEEEEeCcHHHHHHHHHHHHHcCCCCCCeEE
Confidence 999999999999999999999999888862 678899999999999999999999999999999999998888999
Q ss_pred EecCccccccCC--------CCCCCcccccccceeEEEEEecCCc--------hhHHHHHHHHHhh-ccCCCCCCCCCCC
Q 003093 162 IATSWLSTALDT--------NSPFPSDVMDDIQGVLTLRTYTPDS--------VLKRKFISRWRNL-TDAKTPNGYIGLN 224 (848)
Q Consensus 162 i~~~~~~~~~~~--------~~~~~~~~~~~~~G~~~~~~~~~~~--------~~~~~f~~~~~~~-~~~~~~~~~~~~~ 224 (848)
|++++....+.. ..+......++++|++++.++.+.. +..++|.++|+++ ++ ..++
T Consensus 239 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~f~~~y~~~~~~-------~~~~ 311 (433)
T 4f11_A 239 IIPGWYEPSWWEQVHTEANSSRCLRKNLLAAMEGYIGVDFEPLSSKQIKTISGKTPQQYEREYNNKRSG-------VGPS 311 (433)
T ss_dssp EEESCSCTTTTTCC------CCSCHHHHHHHHTTCEEEEECSSCCCCCCCTTSCCHHHHHHHHHHHHTT-------SCCC
T ss_pred EEcCcchHhHhcccccCCCCCCCCHHHHHHHHhCEEEEEEeecCCCCCcccCCCCHHHHHHHHHHhcCC-------CCcc
Confidence 999984433321 1111134457899999999876532 3478999999987 44 4678
Q ss_pred cchhhhhhHHHHHHHHHHHHHhcCCCccccCCCccccccCccccCcccccCChHHHHHHHHhccccccccceEeccCCCC
Q 003093 225 AYGFYAYDTVWLLARAINSFFKQGGNLSFSKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQANMTGTAGPARFNSHGDL 304 (848)
Q Consensus 225 ~~~~~~YDAv~~~a~Al~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~v~Fd~~g~~ 304 (848)
.+++++||||+++|+|++++..+..... . +..+..-....+.++++|+++|++++|+|++|+++| ++|++
T Consensus 312 ~~a~~~YDAv~~la~Al~~a~~~~~~~~--~-------~~~l~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~f-~~Gd~ 381 (433)
T 4f11_A 312 KFHGYAYDGIWVIAKTLQRAMETLHASS--R-------HQRIQDFNYTDHTLGRIILNAMNETNFFGVTGQVVF-RNGER 381 (433)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHSS--S-------CCCGGGCSSCCHHHHHHHHHHHHTCEEEETTEEEEE-ETTEE
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHhccC--C-------CCcccccccccHHHHHHHHHHHHhcEEEccceEEEE-ecCce
Confidence 8999999999999999999875421100 0 000000011233358999999999999999999999 89997
Q ss_pred CCCcEEEEEeecccEEEEEEeeCC
Q 003093 305 INPAYEIINVIGTGYRRIGYWSNY 328 (848)
Q Consensus 305 ~~~~~~I~~~~~~~~~~Vg~w~~~ 328 (848)
. ..|.|+++++++++.||.|++.
T Consensus 382 ~-~~~~I~~~~~g~~~~VG~~~~~ 404 (433)
T 4f11_A 382 M-GTIKFTQFQDSREVKVGEYNAV 404 (433)
T ss_dssp E-CEEEEEEEETTEEEEEEEEETT
T ss_pred e-eeEEEEEEECCceEEEEEEECC
Confidence 5 8999999999999999999864
No 9
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A*
Probab=100.00 E-value=1e-38 Score=359.99 Aligned_cols=301 Identities=15% Similarity=0.223 Sum_probs=248.8
Q ss_pred CCeEEEEccCCchhHHHHHHhhccCCccEEecccCCCCCCC-C-CCCceEeccCChHHHHHHHHHHHHHcCcEEEEEEEE
Q 003093 3 GQTVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSS-L-QFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYV 80 (848)
Q Consensus 3 ~~V~aiIGp~~S~~~~ava~i~~~~~vP~Is~~at~p~ls~-~-~~p~f~r~~p~d~~q~~ai~~~~~~~~w~~vaii~~ 80 (848)
++|+|||||.+|..+.+++++++.+++|+|++++++|.|++ . +||||||+.|++..|+.++++++++|||++|++||+
T Consensus 83 ~~v~aiiG~~~S~~~~~v~~~~~~~~ip~is~~~~~~~ls~~~~~~~~~fr~~p~~~~~~~a~~~~~~~~~w~~v~ii~~ 162 (441)
T 1jdp_A 83 AKPDLILGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQHKDSEYSHLTRVAPAYAKMGEMMLALFRHHHWSRAALVYS 162 (441)
T ss_dssp CCCSEEECCCSHHHHHHHHHHHHHHTCCEEESCCCSGGGGCTTTTTTTEEECSCCHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred CCceEEECCCchhhHHHHHHHHhhcCCcEEcCCCCchhhccccccCCceEEecCcHHHHHHHHHHHHHhcCCcEEEEEEE
Confidence 38999999999999999999999999999999999999998 4 799999999999999999999999999999999999
Q ss_pred cCCCccc---hHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccCCcHHHHHHHHHHcCCCCC
Q 003093 81 DDDHGRN---GIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGT 157 (848)
Q Consensus 81 dd~~g~~---~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~~~~~a~~~g~~~~ 157 (848)
|++||+. ..+.|.+++++.|+||+..+.++.+. .|+..++++|+ +++|||++++...++..++++|+++||..+
T Consensus 163 d~~~g~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~--~d~~~~l~~i~-~~~~vii~~~~~~~~~~~~~~~~~~gl~~~ 239 (441)
T 1jdp_A 163 DDKLERNCYFTLEGVHEVFQEEGLHTSIYSFDETKD--LDLEDIVRNIQ-ASERVVIMCASSDTIRSIMLVAHRHGMTSG 239 (441)
T ss_dssp CCSSSCHHHHHHHHHHHHHHHHTCEEEEEEECTTSC--CCHHHHHHHHH-HHCSEEEEESCHHHHHHHHHHHHHTTCTTT
T ss_pred cCCcccchHHHHHHHHHHHHhcCcEEEEEEecCCcc--cCHHHHHHHhh-cCCcEEEEecCHHHHHHHHHHHHHcCCCCC
Confidence 9999999 99999999999999999887765433 57899999999 999999999999999999999999999887
Q ss_pred CeEEEecCcccc------ccCCCCCCCcccccccceeEEEEEecCCchhHHHHHHHHHhhccCCCCCCCCCCCcchhhhh
Q 003093 158 GYVWIATSWLST------ALDTNSPFPSDVMDDIQGVLTLRTYTPDSVLKRKFISRWRNLTDAKTPNGYIGLNAYGFYAY 231 (848)
Q Consensus 158 ~~~wi~~~~~~~------~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~Y 231 (848)
.|+||.+++... .+............+.+++.++..+.++.|.+++|.++|+++++.........++.+++++|
T Consensus 240 ~~v~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~g~~~~~~~~p~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~Y 319 (441)
T 1jdp_A 240 DYAFFNIELFNSSSYGDGSWKRGDKHDFEAKQAYSSLQTVTLLRTVKPEFEKFSMEVKSSVEKQGLNMEDYVNMFVEGFH 319 (441)
T ss_dssp TCEEEEECSSCCCSTTTCTTCCSSTTHHHHHHHGGGEEEEEECCCCCHHHHHHHHHHHHHHHTTTCCCCSSCCHHHHHHH
T ss_pred CEEEEEEeccccccccCCCCccCCcccHHHHHHHHhheEEeecCCCCchHHHHHHHHHHHHhhCCCCccchhhhHHHHHH
Confidence 899999884322 11111000011113456666677777888999999999998743110001113566889999
Q ss_pred hHHHHHHHHHHHHHhcCCCccccCCCccccccCccccCcccccCChHHHHHHHHhccccccccceEeccCCCCCCCcEEE
Q 003093 232 DTVWLLARAINSFFKQGGNLSFSKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQANMTGTAGPARFNSHGDLINPAYEI 311 (848)
Q Consensus 232 DAv~~~a~Al~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~v~Fd~~g~~~~~~~~I 311 (848)
|||+++|+|++++..++.. +.++++|+++|++++|+|++|+++||++|++. ..|+|
T Consensus 320 dAv~~~A~Al~~~~~~~~~-----------------------~~~~~~l~~~l~~~~f~g~~G~v~fd~~Gd~~-~~~~I 375 (441)
T 1jdp_A 320 DAILLYVLALHEVLRAGYS-----------------------KKDGGKIIQQTWNRTFEGIAGQVSIDANGDRY-GDFSV 375 (441)
T ss_dssp HHHHHHHHHHHHHHHTTCC-----------------------TTCHHHHHHHHSSEEEEETTEEEEECTTSBBC-CEEEE
T ss_pred HHHHHHHHHHHHHHHhCCC-----------------------CCCHHHHHHHHhCCeeECCccceEECCCCCcc-ccEEE
Confidence 9999999999998654211 12489999999999999999999999999974 89999
Q ss_pred EEee---cccEEEEEEeeCCCC
Q 003093 312 INVI---GTGYRRIGYWSNYSG 330 (848)
Q Consensus 312 ~~~~---~~~~~~Vg~w~~~~g 330 (848)
++++ ++.++.||.|++..+
T Consensus 376 ~~~~~~~~g~~~~VG~~~~~~~ 397 (441)
T 1jdp_A 376 IAMTDVEAGTQEVIGDYFGKEG 397 (441)
T ss_dssp EEEEETTTTEEEEEEEEETTTT
T ss_pred EecccCCCCceEEEEEEcCCCC
Confidence 9996 356899999998765
No 10
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=100.00 E-value=4.8e-38 Score=363.98 Aligned_cols=326 Identities=19% Similarity=0.340 Sum_probs=264.2
Q ss_pred CCCeEEEEccCCchhHHHHHHhhccCCccEEecccCCCCCCC-CCCCceEeccCChHHHHHHHHHHHHHcCcEEEEEEEE
Q 003093 2 EGQTVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSS-LQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYV 80 (848)
Q Consensus 2 ~~~V~aiIGp~~S~~~~ava~i~~~~~vP~Is~~at~p~ls~-~~~p~f~r~~p~d~~q~~ai~~~~~~~~w~~vaii~~ 80 (848)
+++|+|||||.+|.++.+++++++.+++|+||+++++|.|++ .+||||||+.|+|..|+.++++++++|||++|++|++
T Consensus 115 ~~~v~aviG~~~S~~s~~va~~~~~~~iP~Is~~a~~~~lsd~~~~p~~fr~~p~d~~~~~a~~~ll~~fgw~~V~ii~~ 194 (555)
T 2e4u_A 115 PLLIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVPPDFYQAKAMAEILRFFNWTYVSTVAS 194 (555)
T ss_dssp CCCEEEEEECSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTCTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCceEEEECCCCcHHHHHHHHHHhCcCCceEeCCcCCCccCCcccCCCceeeCCChHHHHHHHHHHHHHcCCeEEEEEEe
Confidence 468999999999999999999999999999999999999998 5799999999999999999999999999999999999
Q ss_pred cCCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhc-CCCeEEEEEccCCcHHHHHHHHHHcCCCCCCe
Q 003093 81 DDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVAL-TESRIIVVHTHYNRGPVVFHVAQYLGMLGTGY 159 (848)
Q Consensus 81 dd~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~-~~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~ 159 (848)
||+||+...+.|++++++.|+||++.+.++...+..|+..++.+|+. +++||||+++...++..++++++++|+ ++
T Consensus 195 d~~~g~~~~~~~~~~~~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~~s~a~vIi~~~~~~~~~~~~~~~~~~g~---~~ 271 (555)
T 2e4u_A 195 EGDYGETGIEAFEQEARLRNICIATAEKVGRSNIRKSYDSVIRELLQKPNARVVVLFMRSDDSRELIAAANRVNA---SF 271 (555)
T ss_dssp SSTTHHHHHHHHHHHHHTTTCEEEEEEEECTTCCHHHHHHHHHHHHTCTTCCEEEEECCHHHHHHHHHHHHHTTC---CC
T ss_pred eChHHHHHHHHHHHHHHHCCccEEEEEEeCCCCChHHHHHHHHHHhccCCCCEEEEEcCHHHHHHHHHHHHHhcC---Ce
Confidence 99999999999999999999999999888864456899999999964 799999999999999999999999997 78
Q ss_pred EEEecCccccccCCCCCCCcccccccceeEEEEEecCCchhHHHH---------------HHHHHhhccC----------
Q 003093 160 VWIATSWLSTALDTNSPFPSDVMDDIQGVLTLRTYTPDSVLKRKF---------------ISRWRNLTDA---------- 214 (848)
Q Consensus 160 ~wi~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~f---------------~~~~~~~~~~---------- 214 (848)
+||++++|....... ....+.++|++++.++..+.|++++| .+.|+++|+.
T Consensus 272 ~~i~s~~~~~~~~~~----~~~~~~~~G~l~~~~~~~~ipgf~~f~~~~~p~~~p~~~~~~~~w~~~f~c~~~~~~~~~~ 347 (555)
T 2e4u_A 272 TWVASDGWGAQESIV----KGSEHVAYGAITLELASHPVRQFDRYFQSLNPYNNHRNPWFRDFWEQKFQCSLQNKRNHRQ 347 (555)
T ss_dssp EEEECTTTTTCGGGT----TTCHHHHTTCEEEEECCCCCHHHHHHHHTCCTTTCTTCTTHHHHHHHHTTCCCC------C
T ss_pred EEEEeccccccchhh----ccchhhcceEEEEEeccCCCCcHHHHHhhCCcccCCCCHHHHHHHHHHcCCCCCCCCccCC
Confidence 999998776542221 12245689999999877666666554 3457776652
Q ss_pred -CCCCCCC-----CCCcchhhhhhHHHHHHHHHHHHHhcCCCccccCCCccccccCccccCcccccCChHHHHH-HHHhc
Q 003093 215 -KTPNGYI-----GLNAYGFYAYDTVWLLARAINSFFKQGGNLSFSKDSRLSDIQGHLRLDSLRIFNGGNLLRD-SILQA 287 (848)
Q Consensus 215 -~~~~~~~-----~~~~~~~~~YDAv~~~a~Al~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~l~~-~l~~~ 287 (848)
|++++.. .+..+++.+||||+++|+||+++..+..... ...|...... ++++|++ +|+++
T Consensus 348 ~C~~~e~l~~~~~~~~~~~~~~YdAVya~A~AL~~~~~~~~~~~------------~~~~~~~~~~-~~~~l~~~~L~~v 414 (555)
T 2e4u_A 348 VCDKHLAIDSSNYEQESKIMFVVNAVYAMAHALHKMQRTLCPQT------------TKLCDAMKIL-DGKKLYKEYLLKI 414 (555)
T ss_dssp CCCTTCCCCTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHCTTC------------SSCCGGGTSC-CHHHHHHHHTTCE
T ss_pred CCCCccccccccccccccchhhHHHHHHHHHHHHHHHhhhcCCC------------CccccccCCC-CcccccHHhHhce
Confidence 3333222 2456889999999999999999875311100 0112222233 3889999 99999
Q ss_pred ccc------ccccc-eEeccCCCCCCCcEEEEEee--cc--cEEEEEEeeCCCCCceecCCcccCCCCCCCCCcccccee
Q 003093 288 NMT------GTAGP-ARFNSHGDLINPAYEIINVI--GT--GYRRIGYWSNYSGLSVVRPETLYSKPPNRSSSNQRLYSV 356 (848)
Q Consensus 288 ~f~------G~tG~-v~Fd~~g~~~~~~~~I~~~~--~~--~~~~Vg~w~~~~gl~~~~~~~~~~~~~~~~~~~~~l~~i 356 (848)
+|+ |++|+ +.||++|++ ...|+|++++ ++ .++.||.|++ +|.+ +...|
T Consensus 415 ~f~~~~~~~g~~G~~v~fd~~Gd~-~~~y~I~~~~~~~g~~~~~~VG~~~~--~l~i------------------~~~~I 473 (555)
T 2e4u_A 415 QFTAPFNPNKGADSIVKFDTFGDG-MGRYNVFNLQQTGGKYSYLKVGHWAE--TLSL------------------DVDSI 473 (555)
T ss_dssp EECCSSSCCSSSCCEEECCTTSCC-CCCEEEEEEECTTSSCEEEEEEEESS--SEEC------------------CGGGC
T ss_pred eecccccccCCCCCeEEEcCCCCc-cceEEEEEEEecCCcEEEEEEEEecc--eEEE------------------ecccc
Confidence 999 99998 999999996 5899999996 33 4799999984 3322 23468
Q ss_pred EeCCCccccCCcee
Q 003093 357 IWPGQTTQKPRGWV 370 (848)
Q Consensus 357 ~Wpg~~~~~p~~~~ 370 (848)
.|++ .+.|.+.|
T Consensus 474 ~W~~--~~~P~S~C 485 (555)
T 2e4u_A 474 HWSR--NSVPTSQC 485 (555)
T ss_dssp CCTT--SSCCCCCS
T ss_pred ccCC--CCCcceee
Confidence 9987 57888877
No 11
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}
Probab=100.00 E-value=1.7e-38 Score=359.70 Aligned_cols=303 Identities=19% Similarity=0.336 Sum_probs=249.0
Q ss_pred CCeEEEEccCCchhHHHHHHhhccCCccEEecccCCCCCCC-CCCCceEeccCChHHHHHHHHHHHHHcCcEEEEEEEEc
Q 003093 3 GQTVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSS-LQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVD 81 (848)
Q Consensus 3 ~~V~aiIGp~~S~~~~ava~i~~~~~vP~Is~~at~p~ls~-~~~p~f~r~~p~d~~q~~ai~~~~~~~~w~~vaii~~d 81 (848)
++|+|||||.+|+++.+++++++.+++|+|++++++|.|++ .+||||||+.|+|..|+.++++++++|||+||++|++|
T Consensus 115 ~~v~aviG~~~S~~s~ava~i~~~~~iP~Is~~a~~~~lsd~~~~p~~fr~~psd~~~~~a~~~ll~~fgw~~V~ii~~d 194 (479)
T 3sm9_A 115 LLIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVPPDFYQAKAMAEILRFFNWTYVSTVASE 194 (479)
T ss_dssp -CEEEEECCSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTTTTEEESSCCTHHHHHHHHHHHHHTTCCEEEEEEES
T ss_pred CceEEEECCCCcHHHHHHHHHHhcCCccEECCCcCCccccCcccCCCeEEeCCcHHHHHHHHHHHHHHCCCeEEEEEEec
Confidence 47999999999999999999999999999999999999998 57999999999999999999999999999999999999
Q ss_pred CCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHH-HHHhcCCCeEEEEEccCCcHHHHHHHHHHcCCCCCCeE
Q 003093 82 DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLL-VKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYV 160 (848)
Q Consensus 82 d~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l-~~i~~~~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~~ 160 (848)
|+||+...+.|++++++.|+||++.+.++...+..|+..++ +.|+++++||||+++...++..++++++++|+. ++
T Consensus 195 d~~G~~~~~~~~~~~~~~Gi~v~~~~~i~~~~~~~d~~~~l~~~i~~s~a~vIi~~~~~~~~~~l~~~~~~~g~~---~~ 271 (479)
T 3sm9_A 195 GDYGETGIEAFEQEARLRNISIATAEKVGRSNIRKSYDSVIRELLQKPNARVVVLFMRSDDSRELIAAASRANAS---FT 271 (479)
T ss_dssp SHHHHHHHHHHHHHHHTTTCEEEEEEEECC--CHHHHHHHHHHHHTCTTCCEEEEECCHHHHHHHHHHHHHTTCC---CE
T ss_pred chhhHHHHHHHHHHHHHCCceEEEEEEcCCCCChHHHHHHHHHHHhcCCCeEEEEEcChHHHHHHHHHHHHhCCE---EE
Confidence 99999999999999999999999999998765678999999 678889999999999999999999999999985 89
Q ss_pred EEecCccccccCCCCCCCcccccccceeEEEEEecCCchhHHHHHHH---------------HHhhcc-----------C
Q 003093 161 WIATSWLSTALDTNSPFPSDVMDDIQGVLTLRTYTPDSVLKRKFISR---------------WRNLTD-----------A 214 (848)
Q Consensus 161 wi~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~f~~~---------------~~~~~~-----------~ 214 (848)
||++++|....... ....+.++|++++.++..+.|++++|... |+..|+ .
T Consensus 272 wI~s~~w~~~~~~~----~~~~~~~~G~l~~~~~~~~ipgf~~fl~~~~p~~~p~d~~~~~~w~~~f~C~~~~~~~~~~~ 347 (479)
T 3sm9_A 272 WVASDGWGAQESII----KGSEHVAYGAITLELASQPVRQFDRYFQSLNPYNNHRNPWFRDFWEQKFQCSLQNKRNHRRV 347 (479)
T ss_dssp EEECTTTTTCHHHH----TTCTTTTTTCEEEEECCCCCHHHHHHHHTCCTTTCTTCTTHHHHHHHHHTCBCCC---CSCB
T ss_pred EEEechhhcCcccc----ccccccCceEEEEEeccCCCcchhhHhhccCcCcCCCCHHHHHHHHHHcCCCCCCCcccccC
Confidence 99999886532111 11235689999999999999999888653 665554 1
Q ss_pred CCCCCCCC-----CCcchhhhhhHHHHHHHHHHHHHhcCCCccccCCCccccccCccccCcccccCChHHHH-HHHHhcc
Q 003093 215 KTPNGYIG-----LNAYGFYAYDTVWLLARAINSFFKQGGNLSFSKDSRLSDIQGHLRLDSLRIFNGGNLLR-DSILQAN 288 (848)
Q Consensus 215 ~~~~~~~~-----~~~~~~~~YDAv~~~a~Al~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~l~-~~l~~~~ 288 (848)
|++++... ........||||+++|+||++++.+..... ...|.....++ +++|+ ++|++++
T Consensus 348 C~~~~~l~~~~~~~~~~~~~vy~AVyavA~ALh~m~~~~~~~~------------~~~c~~~~~~~-~~qL~~~~Lk~v~ 414 (479)
T 3sm9_A 348 CDKHLAIDSSNYEQESKIMFVVNAVYAMAHALHKMQRTLCPNT------------TKLCDAMKILD-GKKLYKDYLLKIN 414 (479)
T ss_dssp CCTTCCCCTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHSTTC------------SSCCHHHHSCC-HHHHHHHTGGGCC
T ss_pred CCCccccccCccccccchhhHHHHHHHHHHHHHHHHHhhcCCC------------CcCCCCCCCcC-hHHHHHHHhccee
Confidence 44433221 123346899999999999999986322110 11233333343 88999 9999999
Q ss_pred cccc------cc-ceEeccCCCCCCCcEEEEEeec----ccEEEEEEee
Q 003093 289 MTGT------AG-PARFNSHGDLINPAYEIINVIG----TGYRRIGYWS 326 (848)
Q Consensus 289 f~G~------tG-~v~Fd~~g~~~~~~~~I~~~~~----~~~~~Vg~w~ 326 (848)
|.+. +| ++.||++|++ ...|+|+|++. ..++.||.|+
T Consensus 415 F~~~~~~~~~~g~~v~fd~~G~~-~~~YdI~n~~~~~~~~~~~~VG~~~ 462 (479)
T 3sm9_A 415 FTAPFNPNKDADSIVKFDTFGDG-MGRYNVFNFQNVGGKYSYLKVGHWA 462 (479)
T ss_dssp EECTTC-----CCEECCCTTCBC-CCCEEEEEEEESSSCEEEEEEEEES
T ss_pred eccccCccccCCCeEEECCCCCc-ccceEEEEEEECCCcEEEEEEEEEe
Confidence 9998 55 6999999996 68999999973 2468999997
No 12
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION channel, NMDA receptor, allosteri modulation, phenylethanolamine, polyamine; HET: NAG BMA; 2.00A {Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A*
Probab=100.00 E-value=1.7e-38 Score=351.43 Aligned_cols=280 Identities=23% Similarity=0.372 Sum_probs=229.6
Q ss_pred CCCeEEEEc-----cCCchhHHHHHHhhccCCccEEecccCCCCCCC-CCCCceEeccCChHHHHHHHHHHHHHcCcEEE
Q 003093 2 EGQTVAIIG-----PQDAVTSHVVSHVANELQVPLLSFSATDPTLSS-LQFPYFVRTTQSDQYQMAAIAEIVDHYGWREV 75 (848)
Q Consensus 2 ~~~V~aiIG-----p~~S~~~~ava~i~~~~~vP~Is~~at~p~ls~-~~~p~f~r~~p~d~~q~~ai~~~~~~~~w~~v 75 (848)
+++|+|||| |.+|..+.+++++++.+++|+|+++++++.+++ .+||||||+.|++..|+.++++++++|||++|
T Consensus 63 ~~~V~aiiG~~~~~~~~s~~~~a~~~~~~~~~iP~is~~~~~~~ls~~~~~~~~fr~~~~~~~~~~a~~~~~~~~gw~~v 142 (384)
T 3qek_A 63 SSQVYAILVSHPPAPTDHLTPTPISYTAGFYRIPVIGLTTRMSIYSDKSIHLSFLRTVPPYSHQALVWFEMMRLFNWNHV 142 (384)
T ss_dssp GGTEEEEEECC--------CCHHHHHHHHTTTCCEEESSCCCGGGGCSSSCTTEEESSCCGGGHHHHHHHHHHHTTCCEE
T ss_pred HcCceEEEEecCCCCccchhHHHHHHHHhcCCCCEEecccCchhccCcccCCceEEecCChHHHHHHHHHHHHHcCCeEE
Confidence 468999999 678899999999999999999999999999997 67999999999999999999999999999999
Q ss_pred EEEEEcCCCccchHHHHHHHHhccCcEE-----------EEe-------eecCC-CCChHHHHHHHHHHhcCCCeEEEEE
Q 003093 76 IAIYVDDDHGRNGIAALGDTLAAKRCRI-----------SFK-------APLSV-EATEDEITDLLVKVALTESRIIVVH 136 (848)
Q Consensus 76 aii~~dd~~g~~~~~~l~~~l~~~g~~v-----------~~~-------~~~~~-~~~~~d~~~~l~~i~~~~~~viv~~ 136 (848)
++||+|++||+...+.|++++++.|+++ .+. +.++. ..+..|+..+|++|+++++|+|+++
T Consensus 143 ~ii~~d~~~G~~~~~~~~~~~~~~g~~v~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~d~~~~l~~i~~~~~~vii~~ 222 (384)
T 3qek_A 143 ILIVSDDHEGRAAQKKLETLLEGKESKSKKRNYENLDQLSYDNKRGPKADKVLQFEPGTKNLTALLLEAKELEARVIILS 222 (384)
T ss_dssp EEEEESSHHHHHHHHHHHHHHC--------------CCSCCCCCCCCEEEEEEEECTTCSCCHHHHHHHHTSSCCEEEEE
T ss_pred EEEEEcCcccHHHHHHHHHHHHhccCccccccccccceeeeccccCcccceecccCCchhhHHHHHHHHHhcCCcEEEEE
Confidence 9999999999999999999999999854 221 11111 1234789999999999999999999
Q ss_pred ccCCcHHHHHHHHHHcCCCCCCeEEEecCccccccCCCCCCCcccccccceeEEEEEecCCchhHHHHHHHHHhhccCCC
Q 003093 137 THYNRGPVVFHVAQYLGMLGTGYVWIATSWLSTALDTNSPFPSDVMDDIQGVLTLRTYTPDSVLKRKFISRWRNLTDAKT 216 (848)
Q Consensus 137 ~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~f~~~~~~~~~~~~ 216 (848)
++..++..++++|+++||++.+|+||+++++... ....+.++|++++..+.+..
T Consensus 223 ~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~--------~~~~~~~~g~lg~~~~~~~~------------------ 276 (384)
T 3qek_A 223 ASEDDATAVYKSAAMLDMTGAGYVWLVGEREISG--------SALRYAPDGIIGLQLINGKN------------------ 276 (384)
T ss_dssp CCHHHHHHHHHHHHHTTCSSTTCEEECCSGGGSG--------GGGSSCCTTCEEEEETTTTC------------------
T ss_pred CCHHHHHHHHHHHHHcCCccCCeEEEEecccccc--------ccccccCCccEEEEEcCCCc------------------
Confidence 9999999999999999998888999999986532 22346789999998875432
Q ss_pred CCCCCCCCcchhhhhhHHHHHHHHHHHHHhcCCCccccCCCccccccCcccc-CcccccCChHHHHHHHHhccc-ccccc
Q 003093 217 PNGYIGLNAYGFYAYDTVWLLARAINSFFKQGGNLSFSKDSRLSDIQGHLRL-DSLRIFNGGNLLRDSILQANM-TGTAG 294 (848)
Q Consensus 217 ~~~~~~~~~~~~~~YDAv~~~a~Al~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~g~~l~~~l~~~~f-~G~tG 294 (848)
.++++||||+++|+|++++..+..... . ...| +...+|..+..|.+.+++++| +|++|
T Consensus 277 ---------~~~~~YdAV~~~a~Al~~~~~~~~~~~---------~--~~~c~~~~~~~~~~~~l~~~~~~~~f~~G~~G 336 (384)
T 3qek_A 277 ---------ESAHISDAVAVVAQAIHELFEMENITD---------P--PRGCVGNTNIWKTGPLFKRVLMSSKYPDGVTG 336 (384)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHTSSSCCC---------C--CSCCTTCCCCCTTHHHHHHHHHTCCEEEETTE
T ss_pred ---------hhHHHHHHHHHHHHHHHHHHhccCCCC---------C--CCccccCCCccccHHHHHHHHhcCCccCCCCc
Confidence 267899999999999999976532110 0 1223 235678789999999999998 99999
Q ss_pred ceEeccCCCCCCCcEEEEEeecccEEEEEEeeC
Q 003093 295 PARFNSHGDLINPAYEIINVIGTGYRRIGYWSN 327 (848)
Q Consensus 295 ~v~Fd~~g~~~~~~~~I~~~~~~~~~~Vg~w~~ 327 (848)
+++||++|++....|+|+|+++++++.||+|+.
T Consensus 337 ~v~fd~~G~~~~~~~~I~~~~~~~~~~VG~w~~ 369 (384)
T 3qek_A 337 RIEFNEDGDRKFAQYSIMNLQNRKLVQVGIFNG 369 (384)
T ss_dssp EECBCTTSCBCSCCEEEEEEETTEEEEEEEECS
T ss_pred ceEECCCCCCCcccEEEEEEcCCceEEEEEEeC
Confidence 999999999878999999999999999999983
No 13
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} SCOP: c.93.1.1 PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A*
Probab=100.00 E-value=8.9e-38 Score=355.45 Aligned_cols=307 Identities=20% Similarity=0.355 Sum_probs=252.3
Q ss_pred CCCeEEEEccCCchhHHHHHHhhccCCccEEecccCCCCCCC-CCCCceEeccCChHHHHHHHHHHHHHcCcEEEEEEEE
Q 003093 2 EGQTVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSS-LQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYV 80 (848)
Q Consensus 2 ~~~V~aiIGp~~S~~~~ava~i~~~~~vP~Is~~at~p~ls~-~~~p~f~r~~p~d~~q~~ai~~~~~~~~w~~vaii~~ 80 (848)
+++|+|||||.+|+++.+++++++.+++|+||+++++|.|++ .+||||||+.|+|..|+.++++++++|||+||++|++
T Consensus 126 ~~~v~aviG~~~S~~s~ava~i~~~~~iP~Is~~a~~~~lsd~~~~p~~frt~psd~~~~~ai~~ll~~fgw~~V~li~~ 205 (496)
T 3ks9_A 126 KKPIAGVIGPGSSSVAIQVQNLLQLFDIPQIAYSATSIDLSDKTLYKYFLRVVPSDTLQARAMLDIVKRYNWTYVSAVHT 205 (496)
T ss_dssp -CCEEEEECCSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTCTTEEESSCCTHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCceEEEECCCccHHHHHHHHHHhhcceeEECCCcCCccccCccCCCceEEecCChHHHHHHHHHHHHHcCCcEEEEEEe
Confidence 458999999999999999999999999999999999999998 5799999999999999999999999999999999999
Q ss_pred cCCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcC--CCeEEEEEccCCcHHHHHHHHHHcCCCCCC
Q 003093 81 DDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALT--ESRIIVVHTHYNRGPVVFHVAQYLGMLGTG 158 (848)
Q Consensus 81 dd~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~--~~~viv~~~~~~~~~~~~~~a~~~g~~~~~ 158 (848)
||+||+...+.|++++++.|+||++.+.++...+..|+..++++|++. +++||++++...++..++++++++|+.+ .
T Consensus 206 dd~~G~~~~~~~~~~~~~~Gi~v~~~~~i~~~~~~~d~~~~l~~i~~~~~~a~vii~~~~~~~~~~l~~~~~~~g~~~-k 284 (496)
T 3ks9_A 206 EGNYGESGMDAFKELAAQEGLSIAHSDKIYSNAGEKSFDRLLRKLRERLPKARVVVCFCEGMTVRGLLSAMRRLGVVG-E 284 (496)
T ss_dssp SSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCCHHHHHHHHHHHHTTTTTTCEEEEECCHHHHHHHHHHHHHHTCCS-C
T ss_pred ccHHHHHHHHHHHHHHHHcCceEEEEEEECCCCCHHHHHHHHHHHHhccCceEEEEEecChHHHHHHHHHHHHhCCCC-c
Confidence 999999999999999999999999998887666778999999999985 8899999998888999999999999863 4
Q ss_pred eEEEecCccccccCCCCCCCcccccccceeEEEEEecCCchhHHHHHHH---------------HHhhccC---------
Q 003093 159 YVWIATSWLSTALDTNSPFPSDVMDDIQGVLTLRTYTPDSVLKRKFISR---------------WRNLTDA--------- 214 (848)
Q Consensus 159 ~~wi~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~f~~~---------------~~~~~~~--------- 214 (848)
++||++++|....... ......++|++++.++.++.|++++|... |+..|+.
T Consensus 285 ~~~i~s~~w~~~~~~~----~~~~~~~~G~l~~~~~~~~ipgf~~fl~~~~p~~~p~d~~l~~~W~~~f~C~~~~~~~~~ 360 (496)
T 3ks9_A 285 FSLIGSDGWADRDEVI----EGYEVEANGGITIKLQSPEVRSFDDYFLKLRLDTNTRNPWFPEFWQHRFQCRLPGHLLEN 360 (496)
T ss_dssp CEEEECTTTTTCHHHH----TTCHHHHTTCEEEEECCCCCHHHHHHHTTCCTTTCCSCTTHHHHHHHHTTCBCCC-----
T ss_pred EEEEEechhccccccc----cccccccCceEEEeccCCcCcchHhHhccCCcCCCCCCHHHHHHHHHHcCCCCCCCcccc
Confidence 6899998876432211 12335689999999999999999998753 5555531
Q ss_pred ------CCCCCCCC----CCcchhhhhhHHHHHHHHHHHHHhcCCCccccCCCccccccCccccCcccccCChHHHHHHH
Q 003093 215 ------KTPNGYIG----LNAYGFYAYDTVWLLARAINSFFKQGGNLSFSKDSRLSDIQGHLRLDSLRIFNGGNLLRDSI 284 (848)
Q Consensus 215 ------~~~~~~~~----~~~~~~~~YDAv~~~a~Al~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~l~~~l 284 (848)
|++++... ........|+||+++|+||++++.+.+... ...|....++. +.+|+++|
T Consensus 361 ~~~~~~C~~~~~l~~~~~~~~~~~~vy~AVyavAhALh~m~~~~~~~~------------~~~c~~~~~~~-~~qL~~~L 427 (496)
T 3ks9_A 361 PNFKRICTGNESLEENYVQDSKMGFVINAIYAMAHGLQNMHHALCPGH------------VGLCDAMKPID-GSKLLDFL 427 (496)
T ss_dssp CCCSSBCCSCCCTTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHSTTC------------SSCCGGGSSCC-HHHHHHHH
T ss_pred ccccCCCCCcccccccccccchHHHHHHHHHHHHHHHHHHHhccCCCC------------CCCCcCCCCCC-HHHHHHHH
Confidence 33333221 011224699999999999999986422111 11244344454 88999999
Q ss_pred Hhccccccccc-eEeccCCCCCCCcEEEEEeec-----ccEEEEEEeeC
Q 003093 285 LQANMTGTAGP-ARFNSHGDLINPAYEIINVIG-----TGYRRIGYWSN 327 (848)
Q Consensus 285 ~~~~f~G~tG~-v~Fd~~g~~~~~~~~I~~~~~-----~~~~~Vg~w~~ 327 (848)
++++|.+.+|+ +.||++|+. ...|+|+|++. ..+++||.|++
T Consensus 428 k~v~f~~~~g~~v~fd~~gd~-~~~YdI~n~~~~~~~~~~~~~VG~~~~ 475 (496)
T 3ks9_A 428 IKSSFIGVSGEEVWFDEKGDA-PGRYDIMNLQYTEANRYDYVHVGTWHE 475 (496)
T ss_dssp HTCEEECTTSCEEECCTTSCC-CCEEEEEEEEECC--CEEEEEEEEEET
T ss_pred HhcCCcCCCCCEEEECCCCCc-cceEEEEEEEECCCCCEEEEEEEEEeC
Confidence 99999999996 999999995 68999999973 23689999973
No 14
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A*
Probab=100.00 E-value=2.7e-38 Score=356.27 Aligned_cols=322 Identities=16% Similarity=0.181 Sum_probs=261.8
Q ss_pred CCeEEEEccCCchhHHHHHHhhccCCccEEecccCCCCCCC-CCCCceEeccCChHHHHHHHHHHHHHcCcEEEEEE---
Q 003093 3 GQTVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSS-LQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAI--- 78 (848)
Q Consensus 3 ~~V~aiIGp~~S~~~~ava~i~~~~~vP~Is~~at~p~ls~-~~~p~f~r~~p~d~~q~~ai~~~~~~~~w~~vaii--- 78 (848)
++|+|||||.+|..+.+++++++.+++|+|+++++++.|++ .+||||||+.|++..|+.++++++++|||++|++|
T Consensus 76 ~~v~aviG~~~S~~~~av~~~~~~~~ip~is~~~~~~~ls~~~~~~~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~ 155 (435)
T 1dp4_A 76 HSPAVFLGPGCVYSAAPVGRFTAHWRVPLLTAGAPALGIGVKDEYALTTRTGPSHVKLGDFVTALHRRLGWEHQALVLYA 155 (435)
T ss_dssp HCCSEEECCCSHHHHHHHHHHHHHHTCCEEESCCCCGGGGCTTTSTTEEECSCCHHHHHHHHHHHHHHHTCCSEEEEEEE
T ss_pred cCceEEECCCChHHHHHHHHHHHhcCCcEEcccccccccCcccccCeEEEecCcHHHHHHHHHHHHHHCCCcEEEEEEEc
Confidence 57999999999999999999999999999999999999998 46999999999999999999999999999999999
Q ss_pred ---EEcCCCccchHHHHHHHHhc-cCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccCCcHHHHHHHHHHcCC
Q 003093 79 ---YVDDDHGRNGIAALGDTLAA-KRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGM 154 (848)
Q Consensus 79 ---~~dd~~g~~~~~~l~~~l~~-~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~~~~~a~~~g~ 154 (848)
++|++|| ...+.+.+++++ .|+||+..+.++. +..|+..++++|++ ++|+|++++...++..++++|+++|+
T Consensus 156 d~~~~~~~~g-~~~~~~~~~~~~~~g~~v~~~~~~~~--~~~d~~~~l~~i~~-~~~viv~~~~~~~~~~~~~~a~~~g~ 231 (435)
T 1dp4_A 156 DRLGDDRPCF-FIVEGLYMRVRERLNITVNHQEFVEG--DPDHYPKLLRAVRR-KGRVIYICSSPDAFRNLMLLALNAGL 231 (435)
T ss_dssp CCSSSCCHHH-HHHHHHHHHHHHHHCCEEEEEEECTT--CGGGHHHHHHHHHH-HCSEEEEESCHHHHHHHHHHHHHTTC
T ss_pred cCCCCcchHH-HHHHHHHHHHHhhcCeEEEEEEEecC--chhhHHHHHHHHHh-hCceEEEecChHHHHHHHHHHHHcCC
Confidence 6777788 566778888888 9999998876643 45789999999998 99999999999999999999999999
Q ss_pred CCCCeEEEecCccccccC---------CC---CCCCcccccccceeEEEEEecCCchhHHHHHHHHHhhccC---CCCCC
Q 003093 155 LGTGYVWIATSWLSTALD---------TN---SPFPSDVMDDIQGVLTLRTYTPDSVLKRKFISRWRNLTDA---KTPNG 219 (848)
Q Consensus 155 ~~~~~~wi~~~~~~~~~~---------~~---~~~~~~~~~~~~G~~~~~~~~~~~~~~~~f~~~~~~~~~~---~~~~~ 219 (848)
..++++||.++++..... .. ....+...++++|++++.+..|+.+.+++|.++|+++++. |...
T Consensus 232 ~~~~~~~i~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~- 310 (435)
T 1dp4_A 232 TGEDYVFFHLDVFGQSLKSAQGLVPQKPWERGDGQDRSARQAFQAAKIITYKEPDNPEYLEFLKQLKLLADKKFNFTVE- 310 (435)
T ss_dssp CTTTCEEEEECTTCTTSCSSCTTSCBCTTCCSSSCHHHHHHHGGGEEEEEECCCCSHHHHHHHHHHHHHHHHHHCCCCC-
T ss_pred CCCCEEEEEEecccccccccccccccCCcccCCcchHHHHHHhheeEEEecCCCCChhHHHHHHHHHHHhcCCCCcccc-
Confidence 877799999987654321 00 0000233456899999888888889999999999887642 2221
Q ss_pred CCCCCcchhhhhhHHHHHHHHHHHHHhcCCCccccCCCccccccCccccCcccccCChHHHHHHHHhccccccccceEec
Q 003093 220 YIGLNAYGFYAYDTVWLLARAINSFFKQGGNLSFSKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQANMTGTAGPARFN 299 (848)
Q Consensus 220 ~~~~~~~~~~~YDAv~~~a~Al~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~v~Fd 299 (848)
...++.+++++||||+++|+|++++...++. ..++++|+++|++++|+|++|+++||
T Consensus 311 ~~~~~~~~~~~ydav~~~a~Al~~~~~~~~~-----------------------~~~~~~l~~~l~~~~f~g~~G~v~fd 367 (435)
T 1dp4_A 311 DGLKNIIPASFHDGLLLYVQAVTETLAQGGT-----------------------VTDGENITQRMWNRSFQGVTGYLKID 367 (435)
T ss_dssp CSGGGHHHHHHHHHHHHHHHHHHHHHHTTCC-----------------------TTCHHHHHHTTTTEEEEETTEEEEEC
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHcCCC-----------------------CCCHHHHHHHHhCceeeccceeEEEC
Confidence 1136778999999999999999998654321 11489999999999999999999999
Q ss_pred cCCCCCCCcEEEEEe--ecccEEEEEEeeCCCC-CceecCCcccCCCCCCCCCccccceeEeCCCccccCCcee
Q 003093 300 SHGDLINPAYEIINV--IGTGYRRIGYWSNYSG-LSVVRPETLYSKPPNRSSSNQRLYSVIWPGQTTQKPRGWV 370 (848)
Q Consensus 300 ~~g~~~~~~~~I~~~--~~~~~~~Vg~w~~~~g-l~~~~~~~~~~~~~~~~~~~~~l~~i~Wpg~~~~~p~~~~ 370 (848)
++|++. ..|.|+++ .++.++.||.|++..+ +.+ .+.+.|+||++..+...+.|
T Consensus 368 ~~g~~~-~~~~i~~~~~~~g~~~~vg~~~~~~~~l~~-----------------~~~~~i~W~~~~~P~~~p~C 423 (435)
T 1dp4_A 368 RNGDRD-TDFSLWDMDPETGAFRVVLNYNGTSQELMA-----------------VSEHKLYWPLGYPPPDVPKC 423 (435)
T ss_dssp TTSBBC-CCEEEEEECTTTCCEEEEEEECTTTCCEEE-----------------STTCCCCCTTSSCCCSSCTT
T ss_pred CCCCcc-ceeEEEEecCCCCcEEEEEEecCCCceEEE-----------------cCCceeeCCCCCCCCCCCCC
Confidence 999975 79999999 5677999999987653 110 02256899987443334444
No 15
>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel, allosteric modulation, phenylethanolamine, N-glycosylation, extracellular; HET: NAG BMA MAN FUC QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A* 3jpy_A*
Probab=100.00 E-value=1.5e-38 Score=347.01 Aligned_cols=281 Identities=15% Similarity=0.272 Sum_probs=224.7
Q ss_pred CCeEEEEc-cCCchhHHH--HHHhhccCCccEEecccCCC-CCCC-CCCCceEeccCChHHHHHHHHHHHHHcCcEEEEE
Q 003093 3 GQTVAIIG-PQDAVTSHV--VSHVANELQVPLLSFSATDP-TLSS-LQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIA 77 (848)
Q Consensus 3 ~~V~aiIG-p~~S~~~~a--va~i~~~~~vP~Is~~at~p-~ls~-~~~p~f~r~~p~d~~q~~ai~~~~~~~~w~~vai 77 (848)
++|.|||| |.++..+.+ ++.+++.++||+||+++++| .|++ .+||||||+.|+|..|+.++++++++|||++|++
T Consensus 62 ~~V~aiIgg~~s~~~a~a~~v~~i~~~~~iP~IS~~at~~~~lsd~~~~p~f~Rt~psd~~q~~ai~~ll~~fgW~~V~i 141 (364)
T 3qel_B 62 RKIQGVVFADDTDQEAIAQILDFISAQTLTPILGIHGGSSMIMADKDESSMFFQFGPSIEQQASVMLNIMEEYDWYIFSI 141 (364)
T ss_dssp SCEEEEEEEESSCCTHHHHHHHHHHHHHTCCEEEEEGGGGSCCSSCCTTCCEEESSCCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEecCCCCchHHHHHHHHHHhccCCCEEEeecCCCCcCCCcccCceEEEcCCChHHHHHHHHHHHHHCCCeEEEE
Confidence 47989885 555444555 99999999999999999998 8998 6799999999999999999999999999999999
Q ss_pred EEEcCCCccchHHHHHHHHhcc--C--cEEEEeeecCCCCChHHHHHHH-HHHhcCCCeEEEEEccCCcHHHHHHHHHHc
Q 003093 78 IYVDDDHGRNGIAALGDTLAAK--R--CRISFKAPLSVEATEDEITDLL-VKVALTESRIIVVHTHYNRGPVVFHVAQYL 152 (848)
Q Consensus 78 i~~dd~~g~~~~~~l~~~l~~~--g--~~v~~~~~~~~~~~~~d~~~~l-~~i~~~~~~viv~~~~~~~~~~~~~~a~~~ 152 (848)
||+|+ .+.+.|.+.+++. | +|+.+...++...+..++...+ ++|++++++|||++++.+.+..++++|.++
T Consensus 142 I~~d~----~g~~~~~~~l~~~~~~~~ici~~~~~i~~~~~~~~~~~~l~~~i~~~~a~ViIv~~~~~~~~~ll~~a~~~ 217 (364)
T 3qel_B 142 VTTYF----PGYQDFVNKIRSTIENSFVGWELEEVLLLDMSLDDGDSKIQNQLKKLQSPIILLYCTKEEATYIFEVANSV 217 (364)
T ss_dssp EEESC----TTHHHHHHHHHHHHHTCSSCCEEEEEEEECTTSCSSSCHHHHHHTTCCCSEEEEESCHHHHHHHHHHHHTT
T ss_pred EEeCC----ccHHHHHHHHHHHhhccccceEEEEEEccCCCcccHHHHHHHHHHccCCcEEEEEcCHHHHHHHHHHHHHc
Confidence 99884 3445666666655 4 4777766665544446788888 699999999999999999999999999999
Q ss_pred CCCCCCeEEEecCccccccCCCCCCCcccccccceeEEEEEecCCchhHHHHHHHHHhhccCCCCCCCCCCCcchhhhhh
Q 003093 153 GMLGTGYVWIATSWLSTALDTNSPFPSDVMDDIQGVLTLRTYTPDSVLKRKFISRWRNLTDAKTPNGYIGLNAYGFYAYD 232 (848)
Q Consensus 153 g~~~~~~~wi~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~YD 232 (848)
||++++|+||+++.+....+.. ..+..+|+++++++. |++ .+.+++||
T Consensus 218 g~~~~~y~wI~t~~~~~~~~~~------~~~~~~g~~~~~~~~------------W~~--------------~~~~~~yD 265 (364)
T 3qel_B 218 GLTGYGYTWIVPSLVAGDTDTV------PSEFPTGLISVSYDE------------WDY--------------GLPARVRD 265 (364)
T ss_dssp TCSSTTCEEEECHHHHCSTTCC------CTTSCTTCEECCBCT------------TTS--------------CHHHHHHH
T ss_pred CCCCCCeEEEEecccccCcccc------cccCCCceEEEeecc------------chh--------------hHHHHHHH
Confidence 9999999999998764433321 124568888876543 321 24578999
Q ss_pred HHHHHHHHHHHHHhcCCCccccCCCccccccCccccCcc--cccCChHHHHHHHHhccccccccceEeccCCCCCCCcEE
Q 003093 233 TVWLLARAINSFFKQGGNLSFSKDSRLSDIQGHLRLDSL--RIFNGGNLLRDSILQANMTGTAGPARFNSHGDLINPAYE 310 (848)
Q Consensus 233 Av~~~a~Al~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~g~~l~~~l~~~~f~G~tG~v~Fd~~g~~~~~~~~ 310 (848)
||+++|+|++++.++...+.. . ..+|... .+|..|..|.++|++++|+|+ +++||++|++.++.|+
T Consensus 266 aV~~~A~A~~~~~~~~~~i~~--------~--~~~C~~~~~~~~~~G~~l~~~l~~v~f~Gl--~i~F~~~G~~~~~~~~ 333 (364)
T 3qel_B 266 GIAIITTAASDMLSEHSFIPE--------P--KSSCYNTHEKRIYQSNMLNRYLINVTFEGR--DLSFSEDGYQMHPKLV 333 (364)
T ss_dssp HHHHHHHHHHHHHTTTSCCCC--------C--CSCSTTTTTGGGGCCSTTHHHHTCCEETTE--ECCBCTTSSBSSCCEE
T ss_pred HHHHHHHHHHHHHhccCCCCC--------C--CCCCCCCCCCccCCHHHHHHHHhhceEeCc--eEEECCCCCcccceEE
Confidence 999999999998765433221 1 2345544 357789999999999999998 8999999999999999
Q ss_pred EEEee-cccEEEEEEeeCCCCCc
Q 003093 311 IINVI-GTGYRRIGYWSNYSGLS 332 (848)
Q Consensus 311 I~~~~-~~~~~~Vg~w~~~~gl~ 332 (848)
|+|++ ++++++||+|++ .+|.
T Consensus 334 Iinl~~~~~~~~VG~W~~-~~L~ 355 (364)
T 3qel_B 334 IILLNKERKWERVGKWKD-KSLQ 355 (364)
T ss_dssp EEEECTTSCEEEEEEECS-SCEE
T ss_pred EEEEcCCCCcEEEEEECC-CeEE
Confidence 99998 688999999984 3454
No 16
>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99; 2.80A {Homo sapiens} SCOP: c.93.1.0 PDB: 2e4z_A*
Probab=100.00 E-value=1.3e-37 Score=353.54 Aligned_cols=305 Identities=21% Similarity=0.387 Sum_probs=223.3
Q ss_pred CCeEEEEccCCchhHHHHHHhhccCCccEEecccCCCCCCC-CCCCceEeccCChHHHHHHHHHHHHHcCcEEEEEEEEc
Q 003093 3 GQTVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSS-LQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVD 81 (848)
Q Consensus 3 ~~V~aiIGp~~S~~~~ava~i~~~~~vP~Is~~at~p~ls~-~~~p~f~r~~p~d~~q~~ai~~~~~~~~w~~vaii~~d 81 (848)
++|+|||||.+|+.+.+++++++.+++|+||+++++|.|++ .+||||||+.|+|..|+.++++++++|||+||++|++|
T Consensus 116 ~~v~aiiG~~~S~~s~ava~~~~~~~iP~Is~~a~~~~lsd~~~~p~~fr~~psd~~~~~a~~~ll~~fgw~~V~li~~d 195 (481)
T 3mq4_A 116 EKVVGVIGASGSSVSIMVANILRLFQIPQISYASTAPELSDDRRYDFFSRVVPPDSFQAQAMVDIVKALGWNYVSTLASE 195 (481)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHTTTTCCEEESSCCCGGGGCTTTTTTEEESSCCTHHHHHHHHHHHHHHTCCEEEEC---
T ss_pred CCcEEEEcCCCcHHHHHHHHHHHhCCCCEEccccCCccccCcccCCceEEecCchHHHHHHHHHHHHHCCCeEEEEEEEc
Confidence 68999999999999999999999999999999999999998 68999999999999999999999999999999999999
Q ss_pred CCCccchHHHHHHHHhc-cCcEEEEeeecCCCCChH--HHHHHHHHHh-cCCCeEEEEEccCCcHHHHHHHHHHcCCCCC
Q 003093 82 DDHGRNGIAALGDTLAA-KRCRISFKAPLSVEATED--EITDLLVKVA-LTESRIIVVHTHYNRGPVVFHVAQYLGMLGT 157 (848)
Q Consensus 82 d~~g~~~~~~l~~~l~~-~g~~v~~~~~~~~~~~~~--d~~~~l~~i~-~~~~~viv~~~~~~~~~~~~~~a~~~g~~~~ 157 (848)
|+||+...+.|.+++++ .|+||++.+.++...... |+..++.+|+ ++++||||+++...++..++++++++|+.+
T Consensus 196 ~~~G~~~~~~~~~~~~~~~Gi~va~~~~i~~~~~~~~~d~~~~l~~i~~~s~a~vIi~~~~~~~~~~l~~~~~~~g~~~- 274 (481)
T 3mq4_A 196 GSYGEKGVESFTQISKEAGGLSIAQSVRIPQERKDRTIDFDRIIKQLLDTPNSRAVVIFANDEDIKQILAAAKRADQVG- 274 (481)
T ss_dssp CHHHHHHHHHHHHCC---CCCEECCCCCCCCC------CCSHHHHCCCCC----CEEECCCSSHHHHHC-----------
T ss_pred chhHHHHHHHHHHHHHHhCCEEEEEEEEcCCCCccchHHHHHHHHHHHhcCCCEEEEEEEChHHHHHHHHHHHHccCCc-
Confidence 99999999999999986 799999988887653334 7888999998 579999999999999999999999999853
Q ss_pred CeEEEecCccccccCCCCCCCcccccccceeEEEEEecCCchhHHHHHHH---------------HHhhcc---------
Q 003093 158 GYVWIATSWLSTALDTNSPFPSDVMDDIQGVLTLRTYTPDSVLKRKFISR---------------WRNLTD--------- 213 (848)
Q Consensus 158 ~~~wi~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~f~~~---------------~~~~~~--------- 213 (848)
+++||+++.|....... ....+.++|++++.++..+.|++++|... |+..|+
T Consensus 275 ~~~wI~s~~w~~~~~~~----~~~~~~~~G~l~~~~~~~~ipgf~~fl~~~~p~~~p~d~~~~~~w~~~f~C~~~~~~~~ 350 (481)
T 3mq4_A 275 HFLWVGSDSWGSKINPL----HQHEDIAEGAITIQPKRATVEGFDAYFTSRTLENNRRNVWFAEYWEENFNCKLTISGSK 350 (481)
T ss_dssp CCCEEEC---------------------CCCEEEEECCCCCHHHHHHHHTCCTTTCTTCTTHHHHHHHHHTCCC------
T ss_pred ceEEEEECccccccccc----cccchhhccEEEEecCcCccccHHHHhhcCCcCcCCCCHHHHHHHHHhcCCCCCCcccc
Confidence 48999999886543221 12346789999999999999999988653 555543
Q ss_pred ------CCCCCCCCC------CCcchhhhhhHHHHHHHHHHHHHhcCCCccccCCCccccccCccccCcccccCChHHHH
Q 003093 214 ------AKTPNGYIG------LNAYGFYAYDTVWLLARAINSFFKQGGNLSFSKDSRLSDIQGHLRLDSLRIFNGGNLLR 281 (848)
Q Consensus 214 ------~~~~~~~~~------~~~~~~~~YDAv~~~a~Al~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~l~ 281 (848)
.|++++... ........||||+++|+||++++.+.+... ...|....+++ +.+|+
T Consensus 351 ~~~~~~~Ct~~e~l~~~~~~~~~~~~~~vy~AVyavA~ALh~m~~~~~~~~------------~~~c~~~~~~~-~~qL~ 417 (481)
T 3mq4_A 351 KEDTDRKCTGQERIGKDSNYEQEGKVQFVIDAVYAMAHALHHMNKDLCADY------------RGVCPEMEQAG-GKKLL 417 (481)
T ss_dssp ------CCCSCCCTTTSSCCCCCTTHHHHHHHHHHHHHHHHHHHHHHCC----------------CCHHHHTSC-HHHHH
T ss_pred ccccCCCCCCccccCcCCcccccchhhhHHHHHHHHHHHHHHHHHhhCCCC------------CCCCCCCCCcC-HHHHH
Confidence 133333221 113455799999999999999986422111 11233333454 88999
Q ss_pred HHHHhcccccccc-ceEeccCCCCCCCcEEEEEeec-----ccEEEEEEee
Q 003093 282 DSILQANMTGTAG-PARFNSHGDLINPAYEIINVIG-----TGYRRIGYWS 326 (848)
Q Consensus 282 ~~l~~~~f~G~tG-~v~Fd~~g~~~~~~~~I~~~~~-----~~~~~Vg~w~ 326 (848)
++|++++|.+.+| .+.||++|++ ...|+|+|++. ..++.||.|+
T Consensus 418 ~~Lk~v~F~~~~G~~v~fd~~Gd~-~~~YdI~n~~~~~~~~~~~~~VG~~~ 467 (481)
T 3mq4_A 418 KYIRNVNFNGSAGTPVMFNKNGDA-PGRYDIFQYQTTNTSNPGYRLIGQWT 467 (481)
T ss_dssp HHHHTCEEECTTSSEEECCTTSCC-CCEEEEEEEC-----CCCEEEEEEEE
T ss_pred HHHhcceeecCCCCEEEECCCCCC-ceeEEEEEEEECCCCcEEEEEEEEEc
Confidence 9999999999999 6999999995 68999999972 2568999997
No 17
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=99.98 E-value=1.9e-31 Score=293.06 Aligned_cols=278 Identities=17% Similarity=0.211 Sum_probs=241.0
Q ss_pred CCeEEEEccCCchhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEeccCChHHHHHHHHHHH-HHcCcEEEEEEEE-
Q 003093 3 GQTVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIV-DHYGWREVIAIYV- 80 (848)
Q Consensus 3 ~~V~aiIGp~~S~~~~ava~i~~~~~vP~Is~~at~p~ls~~~~p~f~r~~p~d~~q~~ai~~~~-~~~~w~~vaii~~- 80 (848)
++|++||||.+|..+.++++++++++||+|+++++++.+++ .+||+||+.|++..++.++++++ +++||++|++||.
T Consensus 80 ~~v~~iiG~~~s~~~~~~~~~~~~~~iP~i~~~~~~~~~~~-~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~ 158 (366)
T 3td9_A 80 EKVLAIIGEVASAHSLAIAPIAEENKVPMVTPASTNPLVTQ-GRKFVSRVCFIDPFQGAAMAVFAYKNLGAKRVVVFTDV 158 (366)
T ss_dssp SCCSEEEECSSHHHHHHHHHHHHHTTCCEEESSCCCGGGTT-TCSSEEESSCCHHHHHHHHHHHHHHTSCCCEEEEEEET
T ss_pred CCeEEEEccCCchhHHHHHHHHHhCCCeEEecCCCCccccC-CCCCEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEEEeC
Confidence 46999999999999999999999999999999998888865 57999999999999999999998 6689999999986
Q ss_pred cCCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccCCcHHHHHHHHHHcCCCCCCeE
Q 003093 81 DDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYV 160 (848)
Q Consensus 81 dd~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~~ 160 (848)
+++||....+.+.+.+++.|++++... ++.+. .|+...++++++.++|+|++.+...++..++++++++|+.. .
T Consensus 159 ~~~~~~~~~~~~~~~~~~~G~~v~~~~-~~~~~--~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~---~ 232 (366)
T 3td9_A 159 EQDYSVGLSNFFINKFTELGGQVKRVF-FRSGD--QDFSAQLSVAMSFNPDAIYITGYYPEIALISRQARQLGFTG---Y 232 (366)
T ss_dssp TCHHHHHHHHHHHHHHHHTTCEEEEEE-ECTTC--CCCHHHHHHHHHTCCSEEEECSCHHHHHHHHHHHHHTTCCS---E
T ss_pred CCcHHHHHHHHHHHHHHHCCCEEEEEE-eCCCC--ccHHHHHHHHHhcCCCEEEEccchhHHHHHHHHHHHcCCCc---e
Confidence 788999999999999999999999887 76643 68889999999999999999999999999999999999853 4
Q ss_pred EEecCccccccCCCCCCCcccccccceeEEEEEecCC---chhHHHHHHHHHhhccCCCCCCCCCCCcchhhhhhHHHHH
Q 003093 161 WIATSWLSTALDTNSPFPSDVMDDIQGVLTLRTYTPD---SVLKRKFISRWRNLTDAKTPNGYIGLNAYGFYAYDTVWLL 237 (848)
Q Consensus 161 wi~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~---~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~YDAv~~~ 237 (848)
|++++++...... ....+.++|++....+.+. .+..++|.++|+++++ ..|+.+++.+|||++++
T Consensus 233 ~~~~~~~~~~~~~-----~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g-------~~p~~~~~~~yda~~~~ 300 (366)
T 3td9_A 233 ILAGDGADAPELI-----EIGGEAVEGLLFTTHYHPKAASNPVAKKFVEVYKEKYG-------KEPAALNALGYDAYMVL 300 (366)
T ss_dssp EEECGGGCSTHHH-----HHHGGGGTTCEEEESCCGGGCCSHHHHHHHHHHHHHHS-------SCCCHHHHHHHHHHHHH
T ss_pred EEeeCCcCCHHHH-----HHHhHHhCCeEEEEeeCCCCCCCHHHHHHHHHHHHHHC-------CCCchhHHHHHHHHHHH
Confidence 7776655432111 2344678999988876655 6789999999999997 45788999999999999
Q ss_pred HHHHHHHHhcCCCccccCCCccccccCccccCcccccCChHHHHHHHHhcc-ccccccceEeccCCCCCCCcEEEEEeec
Q 003093 238 ARAINSFFKQGGNLSFSKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQAN-MTGTAGPARFNSHGDLINPAYEIINVIG 316 (848)
Q Consensus 238 a~Al~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~l~~~l~~~~-f~G~tG~v~Fd~~g~~~~~~~~I~~~~~ 316 (848)
++|++++. .. +++.+.++|++++ |+|++|+++||++|++. ..+.|+++++
T Consensus 301 ~~al~~ag---------------------------~~-~~~~~~~~l~~~~~~~g~~G~i~f~~~g~~~-~~~~i~~~~~ 351 (366)
T 3td9_A 301 LDAIERAG---------------------------SF-DREKIAEEIRKTRNFNGASGIINIDENGDAI-KSVVVNIVKN 351 (366)
T ss_dssp HHHHHHHT---------------------------SC-CHHHHHHHHTTCCSEEETTEEECBCTTSCBC-CCEEEEEEET
T ss_pred HHHHHHhC---------------------------CC-CHHHHHHHHHhCCCCcccceeeEECCCCCcc-CceEEEEEEC
Confidence 99999952 22 4899999999998 99999999999999975 5599999999
Q ss_pred ccEEEEEEeeCC
Q 003093 317 TGYRRIGYWSNY 328 (848)
Q Consensus 317 ~~~~~Vg~w~~~ 328 (848)
|+++.|+.|++.
T Consensus 352 g~~~~v~~~~~~ 363 (366)
T 3td9_A 352 GSVDFEAVINPD 363 (366)
T ss_dssp TEEEEEEEECGG
T ss_pred CEEEEEEecChh
Confidence 999999999864
No 18
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=99.97 E-value=2.1e-31 Score=294.91 Aligned_cols=296 Identities=14% Similarity=0.086 Sum_probs=245.9
Q ss_pred CCeEEEEccCCchhHHHHHHhhccCCccEEecccCCCCCCC-CCCCceEeccCChHHHHHHHHHHHHHcCcEEEEEEEEc
Q 003093 3 GQTVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSS-LQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVD 81 (848)
Q Consensus 3 ~~V~aiIGp~~S~~~~ava~i~~~~~vP~Is~~at~p~ls~-~~~p~f~r~~p~d~~q~~ai~~~~~~~~w~~vaii~~d 81 (848)
++|++||||.+|..+.++++++++++||+|+++++++.++. ..+||+||+.|++..++.++++++.++||++|++||.|
T Consensus 72 ~~v~aiiG~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~vaii~~~ 151 (387)
T 3i45_A 72 HGVHALAGTFLSHVGLAVSDFARQRKVLFMASEPLTDALTWEKGNRYTYRLRPSTYMQAAMLAAEAAKLPITRWATIAPN 151 (387)
T ss_dssp HCCSEEEECCSHHHHHHHHHHHHHHTCCEEECSCCCGGGTTTTCCTTEEECSCCHHHHHHHHHHHHTTSSCCEEEEECCS
T ss_pred cCCEEEECCcchHHHHHHHHHHHHcCceEEecCCCchhhhhccCCCCEEEeCCChHHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 48999999999999999999999999999999999998875 67899999999999999999999999999999999999
Q ss_pred CCCccchHHHHHHHHhcc--CcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccCCcHHHHHHHHHHcCCCCCCe
Q 003093 82 DDHGRNGIAALGDTLAAK--RCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGY 159 (848)
Q Consensus 82 d~~g~~~~~~l~~~l~~~--g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~ 159 (848)
++||+...+.+.+.+++. |++++....++.+. .|+..++++|++.++|+|++++...++..++++++++|+...
T Consensus 152 ~~~g~~~~~~~~~~l~~~~~g~~vv~~~~~~~~~--~d~~~~~~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~-- 227 (387)
T 3i45_A 152 YEYGQSAVARFKELLLAARPEVTFVAEQWPALYK--LDAGPTVQALQQAEPEGLFNVLFGADLPKFVREGRVRGLFAG-- 227 (387)
T ss_dssp SHHHHHHHHHHHHHHHHHCTTCEEEEEECCCTTC--CCHHHHHHHHHHTCCSEEEECCCTTHHHHHHHHHHHHTSSTT--
T ss_pred chHhHHHHHHHHHHHHHhCCCcEEEeeecCCCCC--cCHHHHHHHHHhCCCCEEEEcCccHHHHHHHHHHHHcCCCCC--
Confidence 999999999999999998 99999887777654 689999999999999999999999999999999999999533
Q ss_pred EEEecCccccccCCCCCCCcccccccceeEEEEE-e-cCCchhHHHHHHHHHhhccCCCCCCCCCCCcchhhhhhHHHHH
Q 003093 160 VWIATSWLSTALDTNSPFPSDVMDDIQGVLTLRT-Y-TPDSVLKRKFISRWRNLTDAKTPNGYIGLNAYGFYAYDTVWLL 237 (848)
Q Consensus 160 ~wi~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~-~-~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~YDAv~~~ 237 (848)
+++.+.......... ....+..+|++.... + .++.|..++|.++|+++++ ..|+.+++.+|||++++
T Consensus 228 ~~i~~~~~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~-------~~p~~~~~~~Yda~~~~ 296 (387)
T 3i45_A 228 RQVVSMLTGEPEYLN----PLKDEAPEGWIVTGYPWYDIDTAPHRAFVEAYRARWK-------EDPFVGSLVGYNTLTAM 296 (387)
T ss_dssp CEEEEEEEESHHHHG----GGGGGCCSSCEEEECCGGGCCCHHHHHHHHHHHHHHS-------SCCCHHHHHHHHHHHHH
T ss_pred CeEEeecCCChHHHH----HhhhhccCceEEecccccCCCCHHHHHHHHHHHHHHC-------CCCCcHHHHHHHHHHHH
Confidence 344433221110010 112245788776532 2 3578999999999999997 35678999999999999
Q ss_pred HHHHHHHHhcCCCccccCCCccccccCccccCcccccCChHHHHHHHHhccccccccceEeccCCCCCCCcEEEEEee-c
Q 003093 238 ARAINSFFKQGGNLSFSKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQANMTGTAGPARFNSHGDLINPAYEIINVI-G 316 (848)
Q Consensus 238 a~Al~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~v~Fd~~g~~~~~~~~I~~~~-~ 316 (848)
++|++++. +. ++++|.++|++++|+|++|+++|++++++......|.+++ .
T Consensus 297 a~Al~~ag---------------------------~~-~~~~v~~al~~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~~~ 348 (387)
T 3i45_A 297 AVAFEKAG---------------------------GT-ESETLVETLKDMAFSTPMGPLSFRASDHQSTMGAWVGRTALR 348 (387)
T ss_dssp HHHHHHHT---------------------------SC-CHHHHHHHTTTCEEEETTEEEEBCTTTCBBCCCEEEEEEEEE
T ss_pred HHHHHHhC---------------------------CC-CHHHHHHHHhcCCCcCCCCCeEEcCCCCccccceeEEEEEee
Confidence 99999952 22 3899999999999999999999997444456777888876 5
Q ss_pred ccEEEEEEeeCCCCCceecCCcccC
Q 003093 317 TGYRRIGYWSNYSGLSVVRPETLYS 341 (848)
Q Consensus 317 ~~~~~Vg~w~~~~gl~~~~~~~~~~ 341 (848)
++...++.|....|..+.+|+..+.
T Consensus 349 ~g~~~i~~w~~~~~~~~~p~~~~~~ 373 (387)
T 3i45_A 349 DGKGVMVDWRYVDGGSVLPPPEVVS 373 (387)
T ss_dssp TTEEEEEEEEEECGGGGSCCHHHHH
T ss_pred CCceeEEeeEEeCchhcCCCHHHHh
Confidence 6779999999888887776654433
No 19
>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A*
Probab=99.97 E-value=3.3e-31 Score=291.33 Aligned_cols=278 Identities=14% Similarity=0.147 Sum_probs=236.1
Q ss_pred CCCeEEEEccCCchhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEeccCChHHHHHHHHHHHHHcCcEEEEEEEEc
Q 003093 2 EGQTVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVD 81 (848)
Q Consensus 2 ~~~V~aiIGp~~S~~~~ava~i~~~~~vP~Is~~at~p~ls~~~~p~f~r~~p~d~~q~~ai~~~~~~~~w~~vaii~~d 81 (848)
+++|++||||.+|..+.++++++++++||+|+++++++.++.. .||+||+.+++..++.+++++++..+|++|++|+.|
T Consensus 70 ~d~V~aiiG~~~S~~~~a~~~~~~~~~vp~i~~~a~~~~~~~~-~~~~fr~~~~~~~~~~~~~~~~~~~g~k~vaii~~~ 148 (371)
T 4f06_A 70 KEKVQYLAGLYFTPNAMAVAPLLQEAKVPMVVMNAATSSITEK-SPYIVRTSFTMFQNTVPAAKVAKQKGATKVAIAVSD 148 (371)
T ss_dssp TSCCSEEEECCSHHHHHHHGGGHHHHTCCEEESSCCCGGGGGG-CTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEES
T ss_pred cCCCEEEEecccccchHHHHHHHHhhcCCccccccccchhccc-CCcceecccchhhhhhhhhhhhhhcCceEEEEEcCC
Confidence 4689999999999999999999999999999999999988764 599999999999999999999999999999999999
Q ss_pred CCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEcc-CCcHHHHHHHHHHcCCCCCCeE
Q 003093 82 DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTH-YNRGPVVFHVAQYLGMLGTGYV 160 (848)
Q Consensus 82 d~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~-~~~~~~~~~~a~~~g~~~~~~~ 160 (848)
++||+...+.|.+.+++.|++|+..+.++.+. .|++.++.+|++.+||+|++... .+++..+++++++.|+...++.
T Consensus 149 ~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~~~--~d~~~~l~~i~~~~pd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 226 (371)
T 4f06_A 149 YGPGIDAETAFKKTFEAEGGKVVEAVRMPLST--TDFGPIMQRIKNSGADMIFTFLPAGPPTLGFVKAYIDNGLKAGGVK 226 (371)
T ss_dssp SHHHHHHHHHHHHHHHHTTCEEEEEEEECTTC--CCCHHHHHHHHHHTCSEEEEECCTTHHHHHHHHHHHHTTTTTTTCE
T ss_pred cccchhHHHHHHHHHHhcCCceEEEEecCccc--ccHHHHHHHHHhcCCCEEEEEeccCchhhHHHHHHHHhhhhccCcE
Confidence 99999999999999999999999999998765 78999999999999999988765 4677789999999999876777
Q ss_pred EEecCccccccCCCCCCCcccccccceeEEEEEecC--CchhHHHHHHHHHhhccCCCCCCCCCCCcchhhhhhHHHHHH
Q 003093 161 WIATSWLSTALDTNSPFPSDVMDDIQGVLTLRTYTP--DSVLKRKFISRWRNLTDAKTPNGYIGLNAYGFYAYDTVWLLA 238 (848)
Q Consensus 161 wi~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~YDAv~~~a 238 (848)
++.+......... ....+..+|++...++.+ ++|..++|.++|+++++. ...++.+++.+|||+++++
T Consensus 227 ~~~~~~~~~~~~~-----~~~~~~~~g~~~~~~~~~~~~~p~~~~f~~~~~~~~~~-----~~~~~~~a~~~Yda~~~l~ 296 (371)
T 4f06_A 227 LMSTGDVVTEPDL-----PNIGEAGLGILSTYHYAVSHDSPENKAFLALLQKGGAK-----LDEVTMTSVAAYDGARLIY 296 (371)
T ss_dssp EEEEGGGGCGGGH-----HHHCGGGTTCEEEESCCTTCCSHHHHHHHHHHHHTTCC-----GGGCCHHHHHHHHHHHHHH
T ss_pred EEEecccCCHHHH-----HhcccccCceEEeeccccCCCChhHHHHHHHHHHhcCC-----CCCccchHHHHHHHHHHHH
Confidence 7666543322221 234567789888877654 468999999999998862 2356789999999999999
Q ss_pred HHHHHHHhcCCCccccCCCccccccCccccCcccccCChHHHHHHHHhccccccccceEeccCCCCCCCcEEEEEee--c
Q 003093 239 RAINSFFKQGGNLSFSKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQANMTGTAGPARFNSHGDLINPAYEIINVI--G 316 (848)
Q Consensus 239 ~Al~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~v~Fd~~g~~~~~~~~I~~~~--~ 316 (848)
+|+++. .++. ++++++++|++++|+|++|+++||++++.....+.|.+++ +
T Consensus 297 ~Ai~~~--------------------------ag~~-d~~~v~~al~~~~~~~~~G~i~fd~~~~~~~~~~~i~~v~~~d 349 (371)
T 4f06_A 297 KMIEAT--------------------------SGKS-DPDKAIAAVKGMKWVSPRGEVSIDPETRHITQNVYLREVEKVD 349 (371)
T ss_dssp HHHHHT--------------------------TTSC-CHHHHHHHHTTCEEEETTEEEEECTTTCBEEEEEEEEEEEEET
T ss_pred HHHHHh--------------------------cCCC-CHHHHHHHHhCCCeeCCcEEEEEcCCCCcccCCEEEEEEEecC
Confidence 999872 1223 3899999999999999999999998776666778888887 4
Q ss_pred ccE
Q 003093 317 TGY 319 (848)
Q Consensus 317 ~~~ 319 (848)
|++
T Consensus 350 Gk~ 352 (371)
T 4f06_A 350 GKL 352 (371)
T ss_dssp TEE
T ss_pred CEE
Confidence 544
No 20
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=99.97 E-value=1.2e-30 Score=285.56 Aligned_cols=281 Identities=16% Similarity=0.157 Sum_probs=239.9
Q ss_pred CCCeEEEEccCCchhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEeccCChHHHHHHHHHHH-HHcCcEEEEEEEE
Q 003093 2 EGQTVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIV-DHYGWREVIAIYV 80 (848)
Q Consensus 2 ~~~V~aiIGp~~S~~~~ava~i~~~~~vP~Is~~at~p~ls~~~~p~f~r~~p~d~~q~~ai~~~~-~~~~w~~vaii~~ 80 (848)
+++|++||||.+|..+.++++++++.+||+|++.++++.+++..+|++||+.|++..++.++++++ +++||++|++|+.
T Consensus 67 ~~~v~~iig~~~s~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~ 146 (356)
T 3ipc_A 67 ADGVKFVVGHANSGVSIPASEVYAENGILEITPAATNPVFTERGLWNTFRTCGRDDQQGGIAGKYLADHFKDAKVAIIHD 146 (356)
T ss_dssp HTTCCEEEECSSHHHHHHHHHHHHTTTCEEEESSCCCGGGGSSCCTTEEESSCCHHHHHHHHHHHHHHHCTTCCEEEEEC
T ss_pred HCCCcEEEcCCCcHHHHHHHHHHHhCCCeEEecCCCCcHhhcCCCCcEEEecCChHHHHHHHHHHHHHhcCCCEEEEEeC
Confidence 368999999999999999999999999999999999999988778999999999999999999965 6679999999999
Q ss_pred cCCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccCCcHHHHHHHHHHcCCCCCCeE
Q 003093 81 DDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYV 160 (848)
Q Consensus 81 dd~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~~ 160 (848)
+++||....+.+.+++++.|++++....++.+. .|+...++++++.++|+|+++++...+..++++++++|+.. .
T Consensus 147 ~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~--~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~---~ 221 (356)
T 3ipc_A 147 KTPYGQGLADETKKAANAAGVTEVMYEGVNVGD--KDFSALISKMKEAGVSIIYWGGLHTEAGLIIRQAADQGLKA---K 221 (356)
T ss_dssp SSHHHHHHHHHHHHHHHHTTCCCSEEEECCTTC--CCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHTCCC---E
T ss_pred CChHHHHHHHHHHHHHHHcCCEEEEEEeeCCCC--CCHHHHHHHHHhcCCCEEEEccCchHHHHHHHHHHHCCCCC---c
Confidence 999999999999999999999998777776543 67889999999999999999999999999999999999864 4
Q ss_pred EEecCccccccCCCCCCCcccccccceeEEEEEecC-CchhHHHHHHHHHhhccCCCCCCCCCCCcchhhhhhHHHHHHH
Q 003093 161 WIATSWLSTALDTNSPFPSDVMDDIQGVLTLRTYTP-DSVLKRKFISRWRNLTDAKTPNGYIGLNAYGFYAYDTVWLLAR 239 (848)
Q Consensus 161 wi~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~YDAv~~~a~ 239 (848)
|+.++++...... .......+|++...++.+ ..|..++|.++|+++ + ..|+.+++.+|||++++++
T Consensus 222 ~~~~~~~~~~~~~-----~~~g~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~-~-------~~p~~~~~~~yda~~~~~~ 288 (356)
T 3ipc_A 222 LVSGDGIVSNELA-----SIAGDAVEGTLNTFGPDPTLRPENKELVEKFKAA-G-------FNPEAYTLYSYAAMQAIAG 288 (356)
T ss_dssp EEECGGGCSHHHH-----HHHGGGGTTCEEEESCCGGGCGGGHHHHHHHHHT-T-------CCCCTTHHHHHHHHHHHHH
T ss_pred EEEeccccCHHHH-----HHhhHHhCCEEEEecCCCCCChhHHHHHHHHHHc-C-------CCcchhHHHHHHHHHHHHH
Confidence 7776654432111 233456889888776654 458899999999988 5 3567799999999999999
Q ss_pred HHHHHHhcCCCccccCCCccccccCccccCcccccCChHHHHHHHHhccccccccceEeccCCCCCCCcEEEEEeec---
Q 003093 240 AINSFFKQGGNLSFSKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQANMTGTAGPARFNSHGDLINPAYEIINVIG--- 316 (848)
Q Consensus 240 Al~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~v~Fd~~g~~~~~~~~I~~~~~--- 316 (848)
|++++. .. +++.+.++|++.+|+|++|+++||++|++....+.|+++++
T Consensus 289 al~~ag---------------------------~~-~~~~~~~~l~~~~~~g~~G~~~f~~~g~~~~~~~~i~~~~~~~~ 340 (356)
T 3ipc_A 289 AAKAAG---------------------------SV-EPEKVAEALKKGSFPTALGEISFDEKGDPKLPGYVMYEWKKGPD 340 (356)
T ss_dssp HHHHHT---------------------------CC-CHHHHHHHHTTCCBCCTTSSBCBCTTSCBCCCCCEEEEEEECTT
T ss_pred HHHHhC---------------------------CC-CHHHHHHHHHhCCCCCcceeeEECCCCCccCCCeEEEEEEECCC
Confidence 999952 22 48999999999999999999999999998778999999995
Q ss_pred ccEEEEEEeeCC
Q 003093 317 TGYRRIGYWSNY 328 (848)
Q Consensus 317 ~~~~~Vg~w~~~ 328 (848)
|+|+.+..|.+.
T Consensus 341 G~~~~~~~~~~~ 352 (356)
T 3ipc_A 341 GKFTYIQQGSHH 352 (356)
T ss_dssp SSEEEEEC----
T ss_pred CcEEEEeccccc
Confidence 899999988653
No 21
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=99.97 E-value=6.7e-31 Score=294.12 Aligned_cols=286 Identities=12% Similarity=0.043 Sum_probs=229.9
Q ss_pred CCCeEEEEccCCchhHHHHHHhhccCCccEEecccCCCCCC-----C-CCCCceEeccCChHHHHHHHHHHHHHc-----
Q 003093 2 EGQTVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLS-----S-LQFPYFVRTTQSDQYQMAAIAEIVDHY----- 70 (848)
Q Consensus 2 ~~~V~aiIGp~~S~~~~ava~i~~~~~vP~Is~~at~p~ls-----~-~~~p~f~r~~p~d~~q~~ai~~~~~~~----- 70 (848)
+++|++||||.+|..+.++++++++++||+|+++ +++.++ + ..|||+||+.|++..++.+++++++++
T Consensus 81 ~~~v~aiiG~~~s~~~~a~~~~~~~~~ip~i~~~-~~~~~~~~~~~~~~~~~~~f~~~p~~~~~~~~~~~~~~~~~~~~~ 159 (419)
T 3h5l_A 81 RDNASALIAGYNLENGTALHDVAADAGVIAMHAN-TVAVHDEMVKSDPDRYWGTFQYDPPETLYGGGFLKFLKDIEDNGE 159 (419)
T ss_dssp TTCCSEEECSCCSSCSCHHHHHHHHHTCEEEECC-CCHHHHHHHHHCTTTCTTEEESSCCTHHHHHHHHHHHHHHHHTTS
T ss_pred hcCCeEEEccccchhHHHhHHHHHHcCCeEEEcC-cchhhhhhhhcCcccCceEEEeCCchHHHHHHHHHHHHHHHhhcc
Confidence 4789999999999999999999999999999964 444332 2 468999999999999999999999876
Q ss_pred ---CcEEEEEEEEcCCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccC-CcHHHHH
Q 003093 71 ---GWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY-NRGPVVF 146 (848)
Q Consensus 71 ---~w~~vaii~~dd~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~-~~~~~~~ 146 (848)
+|++|++||+|++||+...+.|.+.+++.|++|+..+.++.+. .|+..++++|++.++|+|++.+.. .++..++
T Consensus 160 ~~~~~~~vail~~~~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~~~--~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~ 237 (419)
T 3h5l_A 160 FSRPNNKIAIITGPGIYSVNIANAIRDGAGEYGYDVSLFETVAIPV--SDWGPTLAKLRADPPAVIVVTHFYPQDQALFM 237 (419)
T ss_dssp CCCSSSEEEEEECSSHHHHHHHHHHHHHGGGGTCEEEEEEECCSSC--SCCHHHHHHHHHSCCSEEEECCCCHHHHHHHH
T ss_pred ccCCCCEEEEEEcCcchhHHHHHHHHHHHHHcCCeEEEEecCCCCC--ccHHHHHHHHHhcCCCEEEEccccCchHHHHH
Confidence 9999999999999999999999999999999999998888754 789999999999999999998764 6789999
Q ss_pred HHHHHcCCCCCCeEEEecCccccccCCCCCCCcccccccceeEEEEEe-cCCchhHHHHHHHHHhhccCCCCCCCCCCC-
Q 003093 147 HVAQYLGMLGTGYVWIATSWLSTALDTNSPFPSDVMDDIQGVLTLRTY-TPDSVLKRKFISRWRNLTDAKTPNGYIGLN- 224 (848)
Q Consensus 147 ~~a~~~g~~~~~~~wi~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~- 224 (848)
++++++|+ ...|+.++++...... ....+.++|++....+ .++.+..++|.++|+++|+. .+.
T Consensus 238 ~~~~~~g~---~~~~~~~~~~~~~~~~-----~~~g~~~~G~~~~~~~~~~~~~~~~~f~~~~~~~~g~-------~p~~ 302 (419)
T 3h5l_A 238 NQFMTDPT---NSLVYLQYGASLAAFR-----DIAGDNSVGVTYATVLGTLQDEMGDAFAKAYKERYGD-------LSST 302 (419)
T ss_dssp HHHTTSCC---SCEEEECSGGGSHHHH-----HHHGGGGTTCEEEESSCCCSSHHHHHHHHHHHHHHCT-------TSCH
T ss_pred HHHHHcCC---CceEEecCCCCcHHHH-----HhhhhhcCceEEeecCCCCCCHHHHHHHHHHHHHhCC-------CCCc
Confidence 99999998 3457777665432111 2344678898876554 34668899999999999972 343
Q ss_pred cchhhhhhHHHHHHHHHHHHHhcCCCccccCCCccccccCccccCcccccCChHHHHHHHHhccccccccceEeccCCCC
Q 003093 225 AYGFYAYDTVWLLARAINSFFKQGGNLSFSKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQANMTGTAGPARFNSHGDL 304 (848)
Q Consensus 225 ~~~~~~YDAv~~~a~Al~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~v~Fd~~g~~ 304 (848)
.+++.+|||++++++|++++.+.. ..+...++++|.++|++++|+|++|+++||++|+.
T Consensus 303 ~~a~~~Yda~~~~~~a~~~a~~~~---------------------~~g~~~~~~~l~~al~~~~~~g~~G~i~f~~~g~~ 361 (419)
T 3h5l_A 303 ASGCQTYSALYAYSIAAALAGGPG---------------------APYDDVQNKAVADRLRSLIFRGPVGTMRFHADTQS 361 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCC---------------------CTTCHHHHHHHHHHHHHCEEEETTEEEEBCTTTCB
T ss_pred chhHHHHHHHHHHHHHHHHhcCCc---------------------cCCCccCHHHHHHHHHhCCcccCceEEEECCCCCc
Confidence 589999999999999999854211 01222248999999999999999999999999984
Q ss_pred C------------CCcEEEEEeecccEEEEEEee
Q 003093 305 I------------NPAYEIINVIGTGYRRIGYWS 326 (848)
Q Consensus 305 ~------------~~~~~I~~~~~~~~~~Vg~w~ 326 (848)
. ...+.|+++++++++.+..|.
T Consensus 362 ~~~~~~~~~~~~~~~~~~i~q~q~g~~~~~~V~P 395 (419)
T 3h5l_A 362 AWSYPTETNDPSLGMPHIFSQIFDKAEDGVLIAP 395 (419)
T ss_dssp BCEETTTCSCTTSSEECEEEECCCTTSCCEEEES
T ss_pred cccccCccCCccccCCceEEEeeCCceeeEEECC
Confidence 2 123557777777763223353
No 22
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=99.97 E-value=5.4e-30 Score=281.62 Aligned_cols=283 Identities=15% Similarity=0.182 Sum_probs=239.8
Q ss_pred CCCeEEEEccCCchhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEeccCChHHHHHHHHHHHHHcCcEEEEEEEEc
Q 003093 2 EGQTVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVD 81 (848)
Q Consensus 2 ~~~V~aiIGp~~S~~~~ava~i~~~~~vP~Is~~at~p~ls~~~~p~f~r~~p~d~~q~~ai~~~~~~~~w~~vaii~~d 81 (848)
+++|++||||.+|..+.++++++++++||+|+++++++.+++. +||+||+.|++..++.++++++.++||++|++|+.|
T Consensus 70 ~~~v~~iiG~~~s~~~~~~~~~~~~~~ip~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~ 148 (368)
T 4eyg_A 70 NDKVNVIAGFGITPAALAAAPLATQAKVPEIVMAAGTSIITER-SPYIVRTSFTLAQSSIIIGDWAAKNGIKKVATLTSD 148 (368)
T ss_dssp TSCCSEEEECSSHHHHHHHHHHHHHHTCCEEESSCCCGGGGGG-CTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEES
T ss_pred cCCcEEEECCCccHHHHHHHHHHHhCCceEEeccCCChhhccC-CCCEEEecCChHHHHHHHHHHHHHcCCCEEEEEecC
Confidence 3789999999999999999999999999999999888888765 899999999999999999999999999999999999
Q ss_pred CCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccCCcHHHHHHHHHHcCCCCCCeEE
Q 003093 82 DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVW 161 (848)
Q Consensus 82 d~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~~w 161 (848)
+++|....+.|.+.+++.|++++....++.+. .|+..+++++++.++|+|++.+....+..++++++++|+..+++.|
T Consensus 149 ~~~g~~~~~~~~~~l~~~g~~v~~~~~~~~~~--~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~~~v~~ 226 (368)
T 4eyg_A 149 YAPGNDALAFFKERFTAGGGEIVEEIKVPLAN--PDFAPFLQRMKDAKPDAMFVFVPAGQGGNFMKQFAERGLDKSGIKV 226 (368)
T ss_dssp SHHHHHHHHHHHHHHHHTTCEEEEEEEECSSS--CCCHHHHHHHHHHCCSEEEEECCTTCHHHHHHHHHHTTGGGTTCEE
T ss_pred chHhHHHHHHHHHHHHHcCCEEEEEEeCCCCC--CcHHHHHHHHHhcCCCEEEEeccchHHHHHHHHHHHcCCCcCCceE
Confidence 99999999999999999999999888777654 6788999999999999999988888999999999999997655788
Q ss_pred EecCccccccCCCCCCCcccccccceeEEEEEecC--CchhHHHHHHHHHhhccCCCCCCCCCCCcchhhhhhHHHHHHH
Q 003093 162 IATSWLSTALDTNSPFPSDVMDDIQGVLTLRTYTP--DSVLKRKFISRWRNLTDAKTPNGYIGLNAYGFYAYDTVWLLAR 239 (848)
Q Consensus 162 i~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~YDAv~~~a~ 239 (848)
++++++...... ...++..+|++...++.+ +.|..++|.++| ++|+. ..|+.+++.+|||++++++
T Consensus 227 ~~~~~~~~~~~~-----~~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~-~~~~~------~~p~~~~~~~yda~~~~~~ 294 (368)
T 4eyg_A 227 IGPGDVMDDDLL-----NSMGDAALGVVTAHMYSAAHPSAMNKEFVAAY-KKEFG------QRPGFMAVGGYDGIHLVFE 294 (368)
T ss_dssp EEETTTTCHHHH-----TTCCGGGTTCEEEESCCTTCCSHHHHHHHHHH-HHHHS------SCCCHHHHHHHHHHHHHHH
T ss_pred EecCcccCHHHH-----HhhhhhhCCeEEeeecCCCCCCHHHHHHHHHH-HHhCC------CCCChHHHHHHHHHHHHHH
Confidence 888754322111 123456889988877654 458999999999 88831 3678899999999999999
Q ss_pred HHHHHHhcCCCccccCCCccccccCccccCcccccCChHHHHHHHHhccccccccceEec-cCCCCCCCcEEEEEee--c
Q 003093 240 AINSFFKQGGNLSFSKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQANMTGTAGPARFN-SHGDLINPAYEIINVI--G 316 (848)
Q Consensus 240 Al~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~v~Fd-~~g~~~~~~~~I~~~~--~ 316 (848)
|++++.. .. +++.|.++|++++|+|++|+++|| ++|+. ...+.|++++ +
T Consensus 295 al~~~g~--------------------------~~-~~~~l~~al~~~~~~g~~G~i~f~~~~~~~-~~~~~i~~~~~~~ 346 (368)
T 4eyg_A 295 ALKKTGG--------------------------KA-DGDSLIAAMKGMKWESPRGPISIDPETRDI-VQNIYIRKVEKVD 346 (368)
T ss_dssp HHHHTTT--------------------------CC-SHHHHHHHHTTCEEEETTEEEEECTTTCCE-EEEEEEEEEEEET
T ss_pred HHHHhCC--------------------------CC-CHHHHHHHHHcCCcccCCCCeEECcccCCc-ccceEEEEEEecC
Confidence 9999420 12 489999999999999999999999 67774 5778899998 7
Q ss_pred ccEEE--EEEeeC
Q 003093 317 TGYRR--IGYWSN 327 (848)
Q Consensus 317 ~~~~~--Vg~w~~ 327 (848)
|.++. ++.|.+
T Consensus 347 G~~~~v~~~~~~~ 359 (368)
T 4eyg_A 347 GELYNIEFAKFDA 359 (368)
T ss_dssp TEEEEEEEEEEEE
T ss_pred CeEEEEEeecccc
Confidence 77754 445543
No 23
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=99.97 E-value=2.6e-30 Score=284.84 Aligned_cols=271 Identities=13% Similarity=0.134 Sum_probs=234.9
Q ss_pred CCeEEEEccCCchhHHHHHHhhccCCccEEecccCCCCCCC-CCCCceEeccCChHHHHHHHHHHHHHcCcEEEEEEEEc
Q 003093 3 GQTVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSS-LQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVD 81 (848)
Q Consensus 3 ~~V~aiIGp~~S~~~~ava~i~~~~~vP~Is~~at~p~ls~-~~~p~f~r~~p~d~~q~~ai~~~~~~~~w~~vaii~~d 81 (848)
++|++||||.+|..+.+++++++++++|+|+++++++.+++ ..+||+||+.|++..++.++++++.++||++|++|+.|
T Consensus 70 ~~v~~iiG~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~vaii~~~ 149 (375)
T 3i09_A 70 GGLDLLVGGTNSATALSMNQVAAEKKKVYINIGAGADTLTNEQCTPYTVHYAYDTMALAKGTGSAVVKQGGKTWFFLTAD 149 (375)
T ss_dssp SCEEEEEECSCHHHHHHHHHHHHHHTCEEEECSCCCGGGGTTTCCTTEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEES
T ss_pred CCCEEEECCCCcHHHHHHHHHHHHcCceEEEeCCCchhhhcccCCCcEEEeeCChHHHHHHHHHHHHHcCCceEEEEecc
Confidence 78999999999999999999999999999999999998887 56899999999999999999999999999999999999
Q ss_pred CCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccCCcHHHHHHHHHHcCCCCCCeEE
Q 003093 82 DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVW 161 (848)
Q Consensus 82 d~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~~w 161 (848)
++||+...+.+.+.+++.|++|+....++.+. .|+..++.++++.++|+|++.+...++..++++++++|+..+. .+
T Consensus 150 ~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~--~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~~-~i 226 (375)
T 3i09_A 150 YAFGKALEKNTADVVKANGGKVLGEVRHPLSA--SDFSSFLLQAQSSKAQILGLANAGGDTVNAIKAAKEFGITKTM-KL 226 (375)
T ss_dssp SHHHHHHHHHHHHHHHHTTCEEEEEEEECTTC--SCCHHHHHHHHHTCCSEEEEECCHHHHHHHHHHHHHTTGGGTC-EE
T ss_pred cHHHHHHHHHHHHHHHHcCCEEeeeeeCCCCC--ccHHHHHHHHHhCCCCEEEEecCchhHHHHHHHHHHcCCCcCc-eE
Confidence 99999999999999999999999888887654 6899999999999999999999988999999999999997765 45
Q ss_pred EecCccccccCCCCCCCcccccccceeEEEEEecCC-chhHHHHHHHHHhhccCCCCCCCCCCCcchhhhhhHHHHHHHH
Q 003093 162 IATSWLSTALDTNSPFPSDVMDDIQGVLTLRTYTPD-SVLKRKFISRWRNLTDAKTPNGYIGLNAYGFYAYDTVWLLARA 240 (848)
Q Consensus 162 i~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~YDAv~~~a~A 240 (848)
+..+.+...+. ....+.++|++...++.++ .+..++|.++|+++|+ ..|+.+++.+|||++++++|
T Consensus 227 ~g~~~~~~~~~------~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~g-------~~p~~~a~~~Yda~~~~~~A 293 (375)
T 3i09_A 227 AALLMFINDVH------ALGLETTQGLVLTDSWYWNRDQASRQWAQRYFAKMK-------KMPSSLQAADYSSVTTYLKA 293 (375)
T ss_dssp EESSCCHHHHH------HHCHHHHTTCEEEESCCTTSSHHHHHHHHHHHHHHS-------SCCCHHHHHHHHHHHHHHHH
T ss_pred EecccchhhHh------hhChhhhCCeeeeeeecCCCCHHHHHHHHHHHHHHC-------CCCcHHHHHHHHHHHHHHHH
Confidence 54444332211 1123568898887776554 6889999999999997 46788999999999999999
Q ss_pred HHHHHhcCCCccccCCCccccccCccccCcccccCChHHHHHHHHhccccccccceEeccCCCCCCCcEEEEEeeccc
Q 003093 241 INSFFKQGGNLSFSKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQANMTGTAGPARFNSHGDLINPAYEIINVIGTG 318 (848)
Q Consensus 241 l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~v~Fd~~g~~~~~~~~I~~~~~~~ 318 (848)
++++. +. +++.|.++|++++|+|++|.++||++|++. ..+.|+++++++
T Consensus 294 l~~ag---------------------------~~-~~~~l~~aL~~~~~~~~~G~~~f~~~g~~~-~~~~i~~v~~~~ 342 (375)
T 3i09_A 294 VQAAG---------------------------ST-DSDKVMAQLKKMKIDDFYAKGYIRTDGSMI-HDMYLMEVKKPS 342 (375)
T ss_dssp HHHHT---------------------------SC-CHHHHHHHHTTSCEESSSCEEEECTTSBEE-CCEEEEEECCGG
T ss_pred HHHhC---------------------------CC-CHHHHHHHHhCCCccCCCCceEECCCCCee-eeeEEEEEeccc
Confidence 99952 22 489999999999999999999999999975 578899998654
No 24
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=99.97 E-value=1.2e-29 Score=279.75 Aligned_cols=280 Identities=11% Similarity=0.148 Sum_probs=241.5
Q ss_pred CCeEEEEccCCchhHHHHHHhhccCCccEEecccCCCCCCC-CCCCceEeccCChHHHHHHHHHHHHHcCcEEEEEEEEc
Q 003093 3 GQTVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSS-LQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVD 81 (848)
Q Consensus 3 ~~V~aiIGp~~S~~~~ava~i~~~~~vP~Is~~at~p~ls~-~~~p~f~r~~p~d~~q~~ai~~~~~~~~w~~vaii~~d 81 (848)
++|++||||.+|..+.+++++++++++|+|+++++++.+++ ..+|++||+.|++..++.++++++.++||++|++|+.+
T Consensus 81 ~~v~~iig~~~s~~~~~~~~~~~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~ 160 (375)
T 4evq_A 81 EKADVLIGTVHSGVAMAMVKIAREDGIPTIVPNAGADIITRAMCAPNVFRTSFANGQIGRATGDAMIKAGLKKAVTVTWK 160 (375)
T ss_dssp SCCSEEEECSSHHHHHHHHHHHHHHCCCEEESSCCCGGGGTTTCCTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEES
T ss_pred CCceEEEcCCccHHHHHHHHHHHHcCceEEecCCCChhhcccCCCCCEEEeeCChHhHHHHHHHHHHHcCCcEEEEEecC
Confidence 58999999999999999999999999999999999988887 45899999999999999999999999999999999999
Q ss_pred CCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccCCcHHHHHHHHHHcCCCCCCeEE
Q 003093 82 DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVW 161 (848)
Q Consensus 82 d~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~~w 161 (848)
+++|....+.+.+++++.|++++....++.+. .|+...++++++.++|+|++.++...+..++++++++|+.. .|
T Consensus 161 ~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~--~d~~~~~~~l~~~~~dai~~~~~~~~a~~~~~~~~~~g~~v---p~ 235 (375)
T 4evq_A 161 YAAGEEMVSGFKKSFTAGKGEVVKDITIAFPD--VEFQSALAEIASLKPDCVYAFFSGGGALKFIKDYAAANLGI---PL 235 (375)
T ss_dssp SHHHHHHHHHHHHHHHHTTCEEEEEEEECTTC--CCCHHHHHHHHHHCCSEEEEECCTHHHHHHHHHHHHTTCCC---CE
T ss_pred chHHHHHHHHHHHHHHHcCCeEEEEEecCCCC--ccHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCCc---eE
Confidence 99999999999999999999998877777543 67889999999999999999999999999999999999863 35
Q ss_pred EecCccccccCCCCCCCcccccccceeEEEEEecC--CchhHHHHHHHHHhhccCCCCCCCCCCCcchhhhhhHHHHHHH
Q 003093 162 IATSWLSTALDTNSPFPSDVMDDIQGVLTLRTYTP--DSVLKRKFISRWRNLTDAKTPNGYIGLNAYGFYAYDTVWLLAR 239 (848)
Q Consensus 162 i~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~YDAv~~~a~ 239 (848)
+.++ +... ... ...++..+|++...++.+ +.+..++|.++|+++|+ ..|+.+++.+|||++++++
T Consensus 236 ~~~~-~~~~-~~~----~~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~-------~~p~~~~~~~yda~~~~~~ 302 (375)
T 4evq_A 236 WGPG-FLTD-GVE----AAAGPAGDGIKTVLHYVSDLDNAENQAFVKSFEAAYK-------IPPDVFAVQGWDAGQLLDA 302 (375)
T ss_dssp EEEG-GGTT-TTH----HHHGGGGTTCEEEESCCTTCCSHHHHHHHHHHHHHHS-------SCCCHHHHHHHHHHHHHHH
T ss_pred EecC-cCCH-HHH----HhhhhhcCCeEEeeccCCCCCCHHHHHHHHHHHHHHC-------CCCcHHHHHHHHHHHHHHH
Confidence 5554 2211 111 234567899998877655 35899999999999997 4678899999999999999
Q ss_pred HHHHHHhcCCCccccCCCccccccCccccCcccccCChHHHHHHHHhccccccccceEeccCCCCCCCcEEEEEeecccE
Q 003093 240 AINSFFKQGGNLSFSKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQANMTGTAGPARFNSHGDLINPAYEIINVIGTGY 319 (848)
Q Consensus 240 Al~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~v~Fd~~g~~~~~~~~I~~~~~~~~ 319 (848)
|++++... .. +++.|.++|++++|+|++|+++||++|++ ...+.|++++++++
T Consensus 303 al~~~g~~-------------------------~~-~~~~l~~~l~~~~~~g~~G~i~f~~~g~~-~~~~~i~~~~~g~~ 355 (375)
T 4evq_A 303 GVKAVGGD-------------------------VA-KRKELNAAMAAASFASPRGPFKLSAAHNP-VQNFYLRELKGGKS 355 (375)
T ss_dssp HHHHTTTC-------------------------TT-CHHHHHHHHHTCEEEETTEEEEBCTTSCB-CCCEEEEEEETTEE
T ss_pred HHHHhCCC-------------------------CC-CHHHHHHHHhcCCcccCCcceeECCCCCc-cccEEEEEEECCCc
Confidence 99984210 01 48999999999999999999999999996 46899999999999
Q ss_pred EEEEEeeC
Q 003093 320 RRIGYWSN 327 (848)
Q Consensus 320 ~~Vg~w~~ 327 (848)
+.|+.+.+
T Consensus 356 ~~v~~~~~ 363 (375)
T 4evq_A 356 VNLGLAAP 363 (375)
T ss_dssp EEEEEEEC
T ss_pred EEeeehhh
Confidence 99998854
No 25
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=99.97 E-value=5.6e-30 Score=282.58 Aligned_cols=271 Identities=11% Similarity=0.067 Sum_probs=233.5
Q ss_pred CCeEEEEccCCchhHHHHHHhhccCCccEEecccCCCCCCC-CCCCceEeccCChHHHHHHHHHHHHHcCcEEEEEEEEc
Q 003093 3 GQTVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSS-LQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVD 81 (848)
Q Consensus 3 ~~V~aiIGp~~S~~~~ava~i~~~~~vP~Is~~at~p~ls~-~~~p~f~r~~p~d~~q~~ai~~~~~~~~w~~vaii~~d 81 (848)
++|++||||.+|..+.++++++++++||+|+++++++.+++ ..+||+||+.|++..++.++++++.++||++|++|+.|
T Consensus 72 ~~v~~iiG~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~vaii~~~ 151 (379)
T 3n0w_A 72 DGVDAIFDVVNSGTALAINNLVKDKKKLAFITAAAADQIGGTECNGYGIGFLYNFTSIVKTVVQAQLAKGYKTWFLMLPD 151 (379)
T ss_dssp SCCCEEEECCCHHHHHHHHHHHHHHTCEEEECSCCCTTTTTTTCCSSEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEES
T ss_pred CCceEEEcCCCcHHHHHHHHHHHHcCceEEEcCCCchhhhcccCCCcEEEEeCChHHHHHHHHHHHHHcCCcEEEEEecc
Confidence 68999999999999999999999999999999999999987 56899999999999999999999999999999999999
Q ss_pred CCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccCCcHHHHHHHHHHcCCCCCCeEE
Q 003093 82 DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVW 161 (848)
Q Consensus 82 d~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~~w 161 (848)
++||+...+.+.+.+++.|++|+....++.+. .|+..++.++++.++|+|++.+...++..++++++++|+..+.+ +
T Consensus 152 ~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~--~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~~~-~ 228 (379)
T 3n0w_A 152 AAYGDLMNAAIRRELTAGGGQIVGSVRFPFET--QDFSSYLLQAKASGAQLIVSTSGGAANINIMKQAREFGLPSKTQ-K 228 (379)
T ss_dssp SHHHHHHHHHHHHHHHHHTCEEEEEEEECTTC--CCCHHHHHHHHHHTCSEEEECCCHHHHHHHHHHHHHTTCSCSSC-E
T ss_pred cchhHHHHHHHHHHHHHcCCEEEEEEeCCCCC--CCHHHHHHHHHHCCCCEEEEecccchHHHHHHHHHHcCCCCCCc-E
Confidence 99999999999999999999999888887654 68999999999999999999998889999999999999976543 4
Q ss_pred EecCccc-cccCCCCCCCcccccccceeEEEEEecCC-chhHHHHHHHHHhhccCCCCCCCCCCCcchhhhhhHHHHHHH
Q 003093 162 IATSWLS-TALDTNSPFPSDVMDDIQGVLTLRTYTPD-SVLKRKFISRWRNLTDAKTPNGYIGLNAYGFYAYDTVWLLAR 239 (848)
Q Consensus 162 i~~~~~~-~~~~~~~~~~~~~~~~~~G~~~~~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~YDAv~~~a~ 239 (848)
+.+.++. ..+. ....+.++|++...++.++ .|..++|.++|+++|+ ..|+.+++.+|||++++++
T Consensus 229 ~~~~~~~~~~~~------~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~g-------~~p~~~~~~~Yda~~~~~~ 295 (379)
T 3n0w_A 229 VGGMIDILTDVK------SAGLRVMQGQEYATSFYWNMDDRTRAFAKRFYAKMG-------KMPTNNQAGGYSAALQYLK 295 (379)
T ss_dssp EECCBCCHHHHH------HHCHHHHTTCEEEESCCTTSSHHHHHHHHHHHHHHS-------SCCCHHHHHHHHHHHHHHH
T ss_pred EEecccchHHHH------hhCHHhhCCeEEEeeecCCCCHHHHHHHHHHHHHHC-------CCCChHHHHHHHHHHHHHH
Confidence 4444332 2111 1123568899887776554 5889999999999997 4678899999999999999
Q ss_pred HHHHHHhcCCCccccCCCccccccCccccCcccccCChHHHHHHHHhccccccccc-eEeccCCCCCCCcEEEEEeeccc
Q 003093 240 AINSFFKQGGNLSFSKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQANMTGTAGP-ARFNSHGDLINPAYEIINVIGTG 318 (848)
Q Consensus 240 Al~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~-v~Fd~~g~~~~~~~~I~~~~~~~ 318 (848)
|++++. +. ++++|.++|++++|+|+.|. ++||++|++. ..+.|+++++++
T Consensus 296 Al~~ag---------------------------~~-~~~~v~~aL~~~~~~~~~G~~~~f~~~g~~~-~~~~i~~~~~~~ 346 (379)
T 3n0w_A 296 AVNAIG---------------------------SK-DPQKVFAYLKTIKFDDAVTRHGTLRPGGRLV-RDMYLVRAKKPE 346 (379)
T ss_dssp HHHHHT---------------------------CC-CHHHHHHHHTTCCBCSSSCCSBEECTTSBEE-CCEEEEEECCGG
T ss_pred HHHHhC---------------------------CC-CHHHHHHHHhcCCccccCCCceeECCCCCcc-cceEEEEEEchh
Confidence 999952 22 48999999999999999986 9999999864 678999998654
No 26
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=99.97 E-value=5.9e-30 Score=280.15 Aligned_cols=280 Identities=15% Similarity=0.177 Sum_probs=238.7
Q ss_pred CCCeEEEEccCCchhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEeccCChHHHHHHHHHHHHHcCcEEEEEEEEc
Q 003093 2 EGQTVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVD 81 (848)
Q Consensus 2 ~~~V~aiIGp~~S~~~~ava~i~~~~~vP~Is~~at~p~ls~~~~p~f~r~~p~d~~q~~ai~~~~~~~~w~~vaii~~d 81 (848)
+++|++||||.+|..+.++++++++.+||+|+++++++.+++.. ||+||+.|++..++.++++++...||++|++|+.+
T Consensus 70 ~~~v~~iig~~~s~~~~~~~~~~~~~~iP~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~ 148 (358)
T 3hut_A 70 DPRVVGVLGDFSSTVSMAAGSIYGKEGMPQLSPTAAHPDYIKIS-PWQFRAITTPAFEGPNNAAWMIGDGFTSVAVIGVT 148 (358)
T ss_dssp CTTEEEEEECSSHHHHHHHHHHHHHHTCCEEESSCCCGGGTTSC-TTEEESSCCGGGHHHHHHHHHHHTTCCEEEEEEES
T ss_pred cCCcEEEEcCCCcHHHHHHHHHHHHCCCcEEecCCCCcccccCC-CeEEEecCChHHHHHHHHHHHHHcCCCEEEEEecC
Confidence 57899999999999999999999999999999999988887654 99999999999999999999888899999999999
Q ss_pred CCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccCCcHHHHHHHHHHcCCCCCCeEE
Q 003093 82 DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVW 161 (848)
Q Consensus 82 d~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~~w 161 (848)
+++|....+.+.+++++.|++++....++.+. .++...++++++.++|+|++.++...+..++++++++|+.. .|
T Consensus 149 ~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~--~~~~~~~~~l~~~~~d~i~~~~~~~~a~~~~~~~~~~g~~~---p~ 223 (358)
T 3hut_A 149 TDWGLSSAQAFRKAFELRGGAVVVNEEVPPGN--RRFDDVIDEIEDEAPQAIYLAMAYEDAAPFLRALRARGSAL---PV 223 (358)
T ss_dssp SHHHHHHHHHHHHHHHHTTCEEEEEEEECTTC--CCCHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHHHTTCCC---CE
T ss_pred cHHHHHHHHHHHHHHHHcCCEEEEEEecCCCC--ccHHHHHHHHHhcCCCEEEEccCchHHHHHHHHHHHcCCCC---cE
Confidence 99999999999999999999998877776543 67888999999999999999998889999999999999954 37
Q ss_pred EecCccccccCCCCCCCcccccccceeEEEEEecC--CchhHHHHHHHHHhhccCCCCCCCCCCCcchhhhhhHHHHHHH
Q 003093 162 IATSWLSTALDTNSPFPSDVMDDIQGVLTLRTYTP--DSVLKRKFISRWRNLTDAKTPNGYIGLNAYGFYAYDTVWLLAR 239 (848)
Q Consensus 162 i~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~YDAv~~~a~ 239 (848)
++++++...... ....+.++|++...++.+ ..|..++|.++|+++++ ..|+.+++.+|||++++++
T Consensus 224 ~~~~~~~~~~~~-----~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~-------~~p~~~~~~~yda~~~~~~ 291 (358)
T 3hut_A 224 YGSSALYSPKFI-----DLGGPAVEGVRLATAFVLGASDPVVVEFVSAYETLYG-------AIPTLFAAHGYDAVGIMLA 291 (358)
T ss_dssp EECGGGCSHHHH-----HHHGGGGTTCEEEESCCTTCCSHHHHHHHHHHHHHHS-------SCCCHHHHHHHHHHHHHHH
T ss_pred EecCcccCHHHH-----HHhHHhhCCeEEEeccCCCCCCHHHHHHHHHHHHHHC-------CCCCHHHHHHHHHHHHHHH
Confidence 777655432111 233467899998887765 46889999999999997 3678899999999999999
Q ss_pred HHHHHHhcCCCccccCCCccccccCccccCcccccCChHH-HHHHHHhc-cccccccceEeccCCCCCCCcEEEEEeecc
Q 003093 240 AINSFFKQGGNLSFSKDSRLSDIQGHLRLDSLRIFNGGNL-LRDSILQA-NMTGTAGPARFNSHGDLINPAYEIINVIGT 317 (848)
Q Consensus 240 Al~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~-l~~~l~~~-~f~G~tG~v~Fd~~g~~~~~~~~I~~~~~~ 317 (848)
|++++. +. ++++ +.++|+++ +|+|++|+++||++|++....+.|+++++|
T Consensus 292 al~~ag---------------------------~~-~~~~~~~~~l~~~~~~~g~~G~~~f~~~g~~~~~~~~i~~~~~G 343 (358)
T 3hut_A 292 AVGRAG---------------------------PE-VTRESLRDALAATDRYAGVTGITRFDPETRETTKILTRLVVREG 343 (358)
T ss_dssp HHHHHC---------------------------TT-CCHHHHHHHHHTCCSEEETTEEEEECTTTCCEEECCEEEEEETT
T ss_pred HHHHhC---------------------------CC-ChHHHHHHHHHhcCCCcCCceeeEECCCCCcCCCceEEEEEECC
Confidence 999952 12 3777 99999999 899999999999999975688999999999
Q ss_pred cEEEEEEeeC
Q 003093 318 GYRRIGYWSN 327 (848)
Q Consensus 318 ~~~~Vg~w~~ 327 (848)
+++.+..+.+
T Consensus 344 ~~~~~~~~~~ 353 (358)
T 3hut_A 344 DFRVIDREGH 353 (358)
T ss_dssp EEEEC-----
T ss_pred EEEEeccccc
Confidence 9988876644
No 27
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=99.97 E-value=4.8e-30 Score=279.42 Aligned_cols=276 Identities=14% Similarity=0.170 Sum_probs=233.1
Q ss_pred CCCeEEEEccCCchhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEeccCChHHHHHHHHHHH-HHcCcEEEEEEEE
Q 003093 2 EGQTVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIV-DHYGWREVIAIYV 80 (848)
Q Consensus 2 ~~~V~aiIGp~~S~~~~ava~i~~~~~vP~Is~~at~p~ls~~~~p~f~r~~p~d~~q~~ai~~~~-~~~~w~~vaii~~ 80 (848)
+++|++||||.+|..+.++++++++.++|+|+++++++.+++..+|++||+.|++..++.++++++ +++||++|++|+.
T Consensus 67 ~~~v~~iig~~~s~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~i~~i~~ 146 (346)
T 1usg_A 67 NDGIKYVIGHLCSSSTQPASDIYEDEGILMISPGATNPELTQRGYQHIMRTAGLDSSQGPTAAKYILETVKPQRIAIIHD 146 (346)
T ss_dssp HTTCCEEECCSSHHHHHHHHHHHHHHTCEEEECCCCCGGGGSSCCSSEEECSCCGGGHHHHHHHHHHHTTCCSSEEEEEC
T ss_pred hCCCCEEEcCCCcHHHHHHHHHHHHCCCeEEeeCCCChHHhcCCCCcEEeccCChHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 368999999999999999999999999999999888888876558999999999999999999997 5579999999999
Q ss_pred cCCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccCCcHHHHHHHHHHcCCCCCCeE
Q 003093 81 DDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYV 160 (848)
Q Consensus 81 dd~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~~ 160 (848)
+++||....+.+.+.+++.|++++....++.+. .|+...++++++.++|+|++.+....+..++++++++|+..+
T Consensus 147 ~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~--~d~~~~~~~l~~~~~d~i~~~~~~~~a~~~~~~~~~~g~~~~--- 221 (346)
T 1usg_A 147 KQQYGEGLARSVQDGLKAANANVVFFDGITAGE--KDFSALIARLKKENIDFVYYGGYYPEMGQMLRQARSVGLKTQ--- 221 (346)
T ss_dssp SSHHHHHHHHHHHHHHHHTTCCEEEEEECCTTC--CCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCE---
T ss_pred CCchHHHHHHHHHHHHHHcCCEEEEEeccCCCC--cCHHHHHHHHHhcCCCEEEEcCcchHHHHHHHHHHHcCCCCe---
Confidence 999999999999999999999998776676543 567789999998999999999877888999999999998653
Q ss_pred EEecCccccccCCCCCCCcccccccceeEEEEEec-CCchhHHHHHHHHHhhccCCCCCCCCCCCcchhhhhhHHHHHHH
Q 003093 161 WIATSWLSTALDTNSPFPSDVMDDIQGVLTLRTYT-PDSVLKRKFISRWRNLTDAKTPNGYIGLNAYGFYAYDTVWLLAR 239 (848)
Q Consensus 161 wi~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~YDAv~~~a~ 239 (848)
|+.++++.... .. ....+..+|++...++. ++.|..++|.++|+++++ ..++.+++.+|||++++++
T Consensus 222 ~~~~~~~~~~~-~~----~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~-------~~~~~~~~~~yda~~~~~~ 289 (346)
T 1usg_A 222 FMGPEGVGNAS-LS----NIAGDAAEGMLVTMPKRYDQDPANQGIVDALKADKK-------DPSGPYVWITYAAVQSLAT 289 (346)
T ss_dssp EEECGGGCCTT-HH----HHHGGGGTTCEEEECCCGGGSGGGHHHHHHHHHTTC-------CCCCHHHHHHHHHHHHHHH
T ss_pred EEecCCCCcHH-HH----HHhhHhhCCeEEecCCCCCCCHHHHHHHHHHHHHhC-------CCCchhHHHHHHHHHHHHH
Confidence 88776553321 10 22345688988877653 356788999999999886 3567899999999999999
Q ss_pred HHHHHHhcCCCccccCCCccccccCccccCcccccCChHHHHHHHHhccccccccceEeccCCCCCCCcEEEEEee-ccc
Q 003093 240 AINSFFKQGGNLSFSKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQANMTGTAGPARFNSHGDLINPAYEIINVI-GTG 318 (848)
Q Consensus 240 Al~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~v~Fd~~g~~~~~~~~I~~~~-~~~ 318 (848)
|++++. +. ++++|.++|++.+|+|++|+++||++|++....|.|++++ +|+
T Consensus 290 al~~~g---------------------------~~-~~~~l~~~l~~~~~~g~~G~i~f~~~g~~~~~~~~i~~~~~~G~ 341 (346)
T 1usg_A 290 ALERTG---------------------------SD-EPLALVKDLKANGANTVIGPLNWDEKGDLKGFDFGVFQWHADGS 341 (346)
T ss_dssp HHHHHC---------------------------CC-CHHHHHHHHHHHCEEETTEEECBCTTSSBSSCCCEEEEECTTSC
T ss_pred HHHHhC---------------------------CC-CHHHHHHHHHhCCCccceeeeEECCCCCccCCceEEEEEecCCE
Confidence 999952 12 3899999999999999999999999999876789999999 887
Q ss_pred EEEE
Q 003093 319 YRRI 322 (848)
Q Consensus 319 ~~~V 322 (848)
++.|
T Consensus 342 ~~~~ 345 (346)
T 1usg_A 342 STKA 345 (346)
T ss_dssp EEEC
T ss_pred EEec
Confidence 7764
No 28
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=99.96 E-value=3e-29 Score=278.13 Aligned_cols=287 Identities=11% Similarity=0.024 Sum_probs=238.8
Q ss_pred CCeEEEEccCCchhHHHHHHhhccCCccEEecccCCCCCCC-CCCCceEeccCChHHHHHHHHHHHHH-cCcEEEEEEEE
Q 003093 3 GQTVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSS-LQFPYFVRTTQSDQYQMAAIAEIVDH-YGWREVIAIYV 80 (848)
Q Consensus 3 ~~V~aiIGp~~S~~~~ava~i~~~~~vP~Is~~at~p~ls~-~~~p~f~r~~p~d~~q~~ai~~~~~~-~~w~~vaii~~ 80 (848)
++|++||| .+|..+.++++++++.+||+|+++++++ +.+ ..+||+||+.|++..++.++++++.. +||++|++|+.
T Consensus 74 ~~V~~iig-~~s~~~~~~~~~~~~~~iP~i~~~~~~~-~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~ 151 (392)
T 3lkb_A 74 FKIPVFLS-YATGANLQLKPLIQELRIPTIPASMHIE-LIDPPNNDYIFLPTTSYSEQVVALLEYIAREKKGAKVALVVH 151 (392)
T ss_dssp TCCSCEEE-CCHHHHHHHHHHHHHHTCCEEESCCCGG-GGSSSSCTTBCEEECCHHHHHHHHHHHHHHHCTTCEEEEEEC
T ss_pred cCcEEEEe-CCcHHHHHHHHHHHhCCceEEecccChh-hccCCCCCceEecCCChHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 48999999 6899999999999999999999866544 444 56899999999999999999999866 69999999999
Q ss_pred cCCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccCCcHHHHHHHHHHcCCCCCCeE
Q 003093 81 DDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYV 160 (848)
Q Consensus 81 dd~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~~ 160 (848)
+++||+...+.+.+++++.|++++....++.+. .|+..++.++++.++|+|++.+....+..++++++++|+.. .
T Consensus 152 ~~~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~--~d~~~~~~~l~~~~~dav~~~~~~~~a~~~~~~~~~~g~~~---~ 226 (392)
T 3lkb_A 152 PSPFGRAPVEDARKAARELGLQIVDVQEVGSGN--LDNTALLKRFEQAGVEYVVHQNVAGPVANILKDAKRLGLKM---R 226 (392)
T ss_dssp SSHHHHTTHHHHHHHHHHHTCEEEEEEECCTTC--CCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCC---E
T ss_pred CCchhhhHHHHHHHHHHHcCCeEEEEEeeCCCC--cCHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCCc---e
Confidence 999999999999999999999999888777643 68899999999999999999999999999999999999854 4
Q ss_pred EEecCccccccCCCCCCCcccccccceeEEEEEecCC--chhHHHHHHHHHhhccCCCCCCCCCCC----cchhhhhhHH
Q 003093 161 WIATSWLSTALDTNSPFPSDVMDDIQGVLTLRTYTPD--SVLKRKFISRWRNLTDAKTPNGYIGLN----AYGFYAYDTV 234 (848)
Q Consensus 161 wi~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~--~~~~~~f~~~~~~~~~~~~~~~~~~~~----~~~~~~YDAv 234 (848)
|+.++++...... ...++..+|++...++.+. .+..++|.++|+++|+ ..|. .+++.+|||+
T Consensus 227 ~~~~~~~~~~~~~-----~~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~-------~~p~~~~~~~~~~~yda~ 294 (392)
T 3lkb_A 227 HLGAHYTGGPDLI-----ALAGDAAEGFLWATSFYMAHEDTPGIRLQKEIGRKYG-------RPENFIESVNYTNGMLAA 294 (392)
T ss_dssp EEECGGGCSHHHH-----HHHGGGGTTCEEEESBCCTTSCCHHHHHHHHHHHHTT-------CCHHHHTCHHHHHHHHHH
T ss_pred EEEecCcccHHHH-----HhhhhhhcCeEEEEeecCCCCCchhHHHHHHHHHHhC-------CCcccccchhHHHHHHHH
Confidence 6766554322111 2344678999988876442 4567899999999997 2333 3478999999
Q ss_pred HHHHHHHHHHHhcCCCccccCCCccccccCccccCcccccCChHHHHHHHHhcc----cc-------ccccceEeccCCC
Q 003093 235 WLLARAINSFFKQGGNLSFSKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQAN----MT-------GTAGPARFNSHGD 303 (848)
Q Consensus 235 ~~~a~Al~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~l~~~l~~~~----f~-------G~tG~v~Fd~~g~ 303 (848)
+++++|++++...++ .. +++++.++|++++ |+ |++|+++||++|+
T Consensus 295 ~~~~~al~~ag~~~~-----------------------~~-~~~~v~~aL~~~~~~~~~~~~~~~~~G~~G~i~f~~~~~ 350 (392)
T 3lkb_A 295 AIAVEAIRRAQERFK-----------------------RI-TNETVYQAIVGMNGPNAFKPGFAVSTKQGVEIDFTKSEH 350 (392)
T ss_dssp HHHHHHHHHHHHHHS-----------------------SC-CHHHHHHHHHTCCGGGCBCCSSBCCCSSSCSBCCCSSCC
T ss_pred HHHHHHHHHhhccCC-----------------------CC-CHHHHHHHHHhcCCCcCcccccccccccceeeEeCCCCc
Confidence 999999999754211 11 4899999999997 98 9999999999888
Q ss_pred CCCCcEEEEEeecccEEEEEEeeCCCCCc
Q 003093 304 LINPAYEIINVIGTGYRRIGYWSNYSGLS 332 (848)
Q Consensus 304 ~~~~~~~I~~~~~~~~~~Vg~w~~~~gl~ 332 (848)
+....+.|+++++++++.|+.|....++.
T Consensus 351 ~~~~~~~i~~~~~g~~~~v~~w~~~~~~~ 379 (392)
T 3lkb_A 351 TGAEGLRILEAKGGRFVPVTEPFTSALFR 379 (392)
T ss_dssp EEECCBEEEEEETTEEEECSCCBCCHHHH
T ss_pred CCcccEEEEEEeCCEEEEeccccchhHHH
Confidence 66678999999999999999998766554
No 29
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=99.96 E-value=3.1e-28 Score=269.79 Aligned_cols=284 Identities=15% Similarity=0.158 Sum_probs=233.2
Q ss_pred CCCeEEEEccCCchhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEeccCChHHHHHHHHHHHHH-cCcEEEEEEEE
Q 003093 2 EGQTVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDH-YGWREVIAIYV 80 (848)
Q Consensus 2 ~~~V~aiIGp~~S~~~~ava~i~~~~~vP~Is~~at~p~ls~~~~p~f~r~~p~d~~q~~ai~~~~~~-~~w~~vaii~~ 80 (848)
+++|++||| .+|..+.++++++++.+||+|+++++++ ++ .+||+||+.|++..++.++++++.. +||++|++|+.
T Consensus 74 ~~~V~~iiG-~~s~~~~a~~~~~~~~~iP~i~~~~~~~-~~--~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~ 149 (391)
T 3eaf_A 74 RYGVIAIIG-WGTADTEKLSDQVDTDKITYISASYSAK-LL--VKPFNFYPAPDYSTQACSGLAFLASEFGQGKLALAYD 149 (391)
T ss_dssp TTCCSEEEE-CCHHHHHHHHHHHHHHTCEEEESCCCGG-GT--TSTTEECSSCCHHHHHHHHHHHHHHHHCSEEEEEEEC
T ss_pred hcCcEEEEE-cCcHHHHHHHHHHhhcCCeEEecccchh-hc--CCCcEEEeCCCHHHHHHHHHHHHHHhcCCCEEEEEEe
Confidence 578999999 6899999999999999999999776654 44 6799999999999999999999866 79999999999
Q ss_pred -cCCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHH--HhcCCCeEEEEEccCCcHHHHHHHHHHcCCCCC
Q 003093 81 -DDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVK--VALTESRIIVVHTHYNRGPVVFHVAQYLGMLGT 157 (848)
Q Consensus 81 -dd~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~--i~~~~~~viv~~~~~~~~~~~~~~a~~~g~~~~ 157 (848)
|++||....+.+.+.+++.|++|+....++.+. .|+..++.+ |++.++|+|++.+....+..++++++++|+..+
T Consensus 150 ~~~~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~--~d~~~~~~~~~l~~~~~dav~~~~~~~~~~~~~~~~~~~g~~~~ 227 (391)
T 3eaf_A 150 SKVAYSRSPIGAIKKAAPSLGLQVVGDYDLPLRA--TEADAERIAREMLAADPDYVWCGNTISSCSLLGRAMAKVGLDAF 227 (391)
T ss_dssp TTCHHHHTTHHHHHHHTGGGTEEEEEEEECCTTC--CHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHHHHHTCCCE
T ss_pred cCChhHHHHHHHHHHHHHHcCCceeeeeccCCCC--cCHHHHHHHHHHHHcCCCEEEEecCcHHHHHHHHHHHHCCCCce
Confidence 999999999999999999999999888887644 789999999 999999999999998899999999999999543
Q ss_pred CeEEEecCccccccCCCCCCCcccccccce-eEEEEEec-----CCchhHHHHHHHHHhhccCCCCCCCCCCCcchhhhh
Q 003093 158 GYVWIATSWLSTALDTNSPFPSDVMDDIQG-VLTLRTYT-----PDSVLKRKFISRWRNLTDAKTPNGYIGLNAYGFYAY 231 (848)
Q Consensus 158 ~~~wi~~~~~~~~~~~~~~~~~~~~~~~~G-~~~~~~~~-----~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~Y 231 (848)
|+.+++.... ... ...++..+| ++...++. ++.+. .+|.++|+++|+. ....++.+++.+|
T Consensus 228 ---~~~~~~~~~~-~~~----~~~g~~~~g~~~~~~~~~~~~~~~~~~~-~~f~~~~~~~~~~----~~p~~~~~~~~~y 294 (391)
T 3eaf_A 228 ---LLTNVWGFDE-RSP----QLIGEGGYGKVFGISPFIYPMFGQDVEG-IQTIFEAARMNGV----SEDQINLRVVQGF 294 (391)
T ss_dssp ---EEECGGGCST-THH----HHHCGGGTTSEEEEESBCCGGGCTTCHH-HHHHHHHHHHTTC----CGGGCCHHHHHHH
T ss_pred ---EEEeccCCCH-HHH----HhhhhhccCcEEEEEEecCcccCCCCch-hHHHHHHHHHhCC----CCcccccHHHHHH
Confidence 5555433221 111 233466899 88777665 34455 6799999999861 0011347899999
Q ss_pred hHHHHHHHHHHHHHhcCCCccccCCCccccccCccccCccc--ccCChHHHHHHHHhcccc--cccc-ceEeccCCCCCC
Q 003093 232 DTVWLLARAINSFFKQGGNLSFSKDSRLSDIQGHLRLDSLR--IFNGGNLLRDSILQANMT--GTAG-PARFNSHGDLIN 306 (848)
Q Consensus 232 DAv~~~a~Al~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~g~~l~~~l~~~~f~--G~tG-~v~Fd~~g~~~~ 306 (848)
||++++++|++++.+. + .. +++.+.++|++.+|+ |++| +++||++|++..
T Consensus 295 da~~~l~~Al~~a~~~------------------------g~~~~-~~~~v~~aL~~~~~~~~G~~G~~i~f~~~~~~~~ 349 (391)
T 3eaf_A 295 VNVWLLIKAIESVTSQ------------------------DLQER-GGEALKEALEANTFDLGGITADTIDYEPGFHLAY 349 (391)
T ss_dssp HHHHHHHHHHTTSCHH------------------------HHHHH-THHHHHHHHHHCCBCSTTCBSSCBCCBTTBCCCC
T ss_pred HHHHHHHHHHHHHHhc------------------------CCCCC-CHHHHHHHHHhCCCCCCCccccceeeCCCCCCcc
Confidence 9999999999984211 1 12 389999999998898 9999 999998766667
Q ss_pred CcEEEEEe-ecccEEEEEEeeCCC
Q 003093 307 PAYEIINV-IGTGYRRIGYWSNYS 329 (848)
Q Consensus 307 ~~~~I~~~-~~~~~~~Vg~w~~~~ 329 (848)
..+.|+++ ++|+++.|+.|....
T Consensus 350 ~~~~i~~~~~~G~~~~v~~~~~~~ 373 (391)
T 3eaf_A 350 RKVFIIKLGENGELQLMGKFEAPS 373 (391)
T ss_dssp CCEEEEEECTTSSEEEEEEECCCT
T ss_pred eEEEEEEEecCCEEEEeeeecCcc
Confidence 88999999 899999999997543
No 30
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=99.96 E-value=1.6e-28 Score=269.47 Aligned_cols=274 Identities=14% Similarity=0.117 Sum_probs=232.3
Q ss_pred CCeEEEEccCCchhHHHHHH--hhccCCccEEecccCCCCCCCCCCCceEeccCChHHHHHHHHHHHHHcCcEEEEEEEE
Q 003093 3 GQTVAIIGPQDAVTSHVVSH--VANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYV 80 (848)
Q Consensus 3 ~~V~aiIGp~~S~~~~ava~--i~~~~~vP~Is~~at~p~ls~~~~p~f~r~~p~d~~q~~ai~~~~~~~~w~~vaii~~ 80 (848)
++|++||||.+|..+.++++ ++++.+||+|+++++++.+++ +|++||+.|++..++.++++++.++||++|++|+.
T Consensus 72 ~~v~~iig~~~s~~~~~~~~~~~~~~~~iP~v~~~~~~~~~~~--~~~~f~~~~~~~~~~~~~~~~l~~~g~~~iaii~~ 149 (364)
T 3lop_A 72 DNPVALLTVVGTANVEALMREGVLAEARLPLVGPATGASSMTT--DPLVFPIKASYQQEIDKMITALVTIGVTRIGVLYQ 149 (364)
T ss_dssp SCEEEEECCCCHHHHHHHHHTTHHHHHTCCEESCSCCCGGGGS--CTTEECCSCCHHHHHHHHHHHHHHTTCCCEEEEEE
T ss_pred cCcEEEEecCCCHHHHhhCchhhHHhcCCcEEEcccCcHhhcc--CCcEEEeCCChHHHHHHHHHHHHHcCCceEEEEEe
Confidence 58999999999999999999 999999999999988888876 89999999999999999999999999999999999
Q ss_pred cCCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccCCcHHHHHHHHHHcCCCCCCeE
Q 003093 81 DDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYV 160 (848)
Q Consensus 81 dd~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~~ 160 (848)
+++||....+.+.+++++.|++++....++.+. .|+..+++++++.++|+|++.++...+..++++++++|+..+
T Consensus 150 ~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~--~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~~--- 224 (364)
T 3lop_A 150 EDALGKEAITGVERTLKAHALAITAMASYPRNT--ANVGPAVDKLLAADVQAIFLGATAEPAAQFVRQYRARGGEAQ--- 224 (364)
T ss_dssp TTHHHHHHHHHHHHHHHTTTCCCSEEEEECTTS--CCCHHHHHHHHHSCCSEEEEESCHHHHHHHHHHHHHTTCCCE---
T ss_pred CchhhHHHHHHHHHHHHHcCCcEEEEEEecCCC--ccHHHHHHHHHhCCCCEEEEecCcHHHHHHHHHHHHcCCCCe---
Confidence 999999999999999999999998777777543 688999999999999999999988899999999999999654
Q ss_pred EEecCccccccCCCCCCCcccc-cccceeEEEEEe----cCCchhHHHHHHHHHhhccCCCCCCCCCCCcchhhhhhHHH
Q 003093 161 WIATSWLSTALDTNSPFPSDVM-DDIQGVLTLRTY----TPDSVLKRKFISRWRNLTDAKTPNGYIGLNAYGFYAYDTVW 235 (848)
Q Consensus 161 wi~~~~~~~~~~~~~~~~~~~~-~~~~G~~~~~~~----~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~YDAv~ 235 (848)
|+..+++...... ...+ +.++|++....+ .+..|..++|.++|+++++. ...|+.+++.+|||++
T Consensus 225 ~i~~~~~~~~~~~-----~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~-----~~~p~~~a~~~yda~~ 294 (364)
T 3lop_A 225 LLGLSSIDPGILQ-----KVAGLDAVRGYSLALVMPNPGKSVNPVIREFNRARAAVGAK-----DVDLSFRAVEGFVAAK 294 (364)
T ss_dssp EEECTTSCHHHHH-----HHHCHHHHTTCEEEECSCCTTCTTSHHHHHHHHHHHHHTCT-----TCCCCHHHHHHHHHHH
T ss_pred EEEeccCChHHHH-----HHhChhhcCCeEEEEEeCCCCCCCCHHHHHHHHHHHHhcCC-----CCCCChHHHHHHHHHH
Confidence 6776655432111 2334 568898876532 25678999999999999862 1267889999999999
Q ss_pred HHHHHHHHHHhcCCCccccCCCccccccCccccCcccccCChHHHHHHHHhc-cccc-cccceEeccCCCCCCCcEEEEE
Q 003093 236 LLARAINSFFKQGGNLSFSKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQA-NMTG-TAGPARFNSHGDLINPAYEIIN 313 (848)
Q Consensus 236 ~~a~Al~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~l~~~l~~~-~f~G-~tG~v~Fd~~g~~~~~~~~I~~ 313 (848)
++++|++++.. .. +++.|.++|+++ +|+| ++|+++|+++++.......|.+
T Consensus 295 ~~~~al~~ag~--------------------------~~-~~~~v~~aL~~~~~~~~~~~g~i~f~~~~~~~~~~~~i~~ 347 (364)
T 3lop_A 295 VLAEAIRRAGP--------------------------KP-TREQVRHALTELRDYDVGGGFTVDFTDRSRPGSHYIELGV 347 (364)
T ss_dssp HHHHHHHHHCS--------------------------SC-CHHHHHHHHHTCEEEESSTTCEEECSSTTSCSCCCCEEEE
T ss_pred HHHHHHHHhCC--------------------------CC-CHHHHHHHHHhcCCccCCCCeeeecCCCCcCCcceEEEEE
Confidence 99999999510 11 489999999999 6999 9999999988876667778888
Q ss_pred eecccEE
Q 003093 314 VIGTGYR 320 (848)
Q Consensus 314 ~~~~~~~ 320 (848)
++++++.
T Consensus 348 ~~~~~~~ 354 (364)
T 3lop_A 348 VGPNGLV 354 (364)
T ss_dssp ECTTSCE
T ss_pred EcCCCcc
Confidence 8876653
No 31
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=99.96 E-value=1.6e-28 Score=271.65 Aligned_cols=283 Identities=15% Similarity=0.180 Sum_probs=233.9
Q ss_pred CCeEEEEccCCchhHHHHHHhhccCCccEEecccCCCCCC--CCCCCceEeccCChHHHHHHHHHHHHHcCcEEEEEEEE
Q 003093 3 GQTVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLS--SLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYV 80 (848)
Q Consensus 3 ~~V~aiIGp~~S~~~~ava~i~~~~~vP~Is~~at~p~ls--~~~~p~f~r~~p~d~~q~~ai~~~~~~~~w~~vaii~~ 80 (848)
++|++||||.+|..+.++++++++.+||+|+++++++.++ ...+||+||+.|++..++.++++++.++||++|++|+.
T Consensus 88 ~~v~~iig~~~s~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~ 167 (386)
T 3sg0_A 88 EKVDVLIGSSLTPVSLPLIDIAAEAKTPLMTMAAAAILVAPMDERRKWVYKVVPNDDIMAEAIGKYIAKTGAKKVGYIGF 167 (386)
T ss_dssp SCCSEEECCSSHHHHHHHHHHHHHTTCCEEECCCCGGGTCSCCTTGGGEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred cCceEEECCCCchhHHHHHHHHHhcCCeEEEecCCCccccccCCCCCcEEecCCCcHHHHHHHHHHHHhcCCCEEEEEec
Confidence 4899999999999999999999999999999998888777 45789999999999999999999999999999999999
Q ss_pred cCCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccCCcHHHHHHHHHHcCCCCCCeE
Q 003093 81 DDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYV 160 (848)
Q Consensus 81 dd~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~~ 160 (848)
|++||+...+.+.+.+++.|++++....++.+. .|+...++++++.++|+|++.++...+..++++++++|+..+
T Consensus 168 ~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~--~d~~~~~~~~~~~~~dav~~~~~~~~a~~~~~~~~~~g~~~~--- 242 (386)
T 3sg0_A 168 SDAYGEGYYKVLAAAAPKLGFELTTHEVYARSD--ASVTGQVLKIIATKPDAVFIASAGTPAVLPQKALRERGFKGA--- 242 (386)
T ss_dssp SSHHHHHHHHHHHHHHHHHTCEECCCEEECTTC--SCCHHHHHHHHHTCCSEEEEECCSGGGHHHHHHHHHTTCCSE---
T ss_pred CchHHHHHHHHHHHHHHHcCCEEEEEEeeCCCC--CcHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCCCc---
Confidence 999999999999999999999998777776543 678899999999999999999998999999999999999643
Q ss_pred EEecCccccccCCCCCCCcccccccceeEEEEEe------cC-C---chhHHHHHHHHHhhccCCCCCCCCCCCcchhhh
Q 003093 161 WIATSWLSTALDTNSPFPSDVMDDIQGVLTLRTY------TP-D---SVLKRKFISRWRNLTDAKTPNGYIGLNAYGFYA 230 (848)
Q Consensus 161 wi~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~------~~-~---~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (848)
++..+++...... ....+..+|++....+ .+ . .+..++|.++|+++|+. ..|+.+++.+
T Consensus 243 ~~~~~~~~~~~~~-----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~------~~p~~~~~~~ 311 (386)
T 3sg0_A 243 IYQTHGVATEEFI-----KLGGKDVEGAIFAGEAFSGAEDMPADSPFRKVKARFVDAYKAANGG------AAPTIFGVHL 311 (386)
T ss_dssp EECCGGGCSHHHH-----HHHGGGGTTCEEEECHHHHGGGSCTTCHHHHHHHHHHHHHHHHTTT------CCCCHHHHHH
T ss_pred EEeccccCCHHHH-----HhhhhhcCCeEEecccccccccCCCCCcchHHHHHHHHHHHHHhCC------CCCChhHHHH
Confidence 5665554332111 2344678898877642 12 2 24689999999999972 2568899999
Q ss_pred hhHHHHHHHHHHHHHhcCCCccccCCCccccccCccccCcccccCChHHHHHHHHhc-cccccccceEeccCCCC--CCC
Q 003093 231 YDTVWLLARAINSFFKQGGNLSFSKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQA-NMTGTAGPARFNSHGDL--INP 307 (848)
Q Consensus 231 YDAv~~~a~Al~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~l~~~l~~~-~f~G~tG~v~Fd~~g~~--~~~ 307 (848)
|||++++++|++++.+... .+..++++.+.++|+++ +|+|++|+++|+++++. ...
T Consensus 312 yda~~~~~~al~~a~~~~~---------------------~g~~~~~~~~~~al~~~~~~~g~~G~~~f~~~~~~g~~~~ 370 (386)
T 3sg0_A 312 WDSMTLVENAIPAALKAAK---------------------PGTPEFRAAIRDQIEKSKDLALNNGLSNMTPDNHNGYDER 370 (386)
T ss_dssp HHHHHHHHHHHHHHHHHCC---------------------TTSHHHHHHHHHHHTTCCSEEETTEEECCCSSCSSCCCGG
T ss_pred HHHHHHHHHHHHHhhhccC---------------------CCCcchHHHHHHHHHhccCccccceeEEECCCcCCCCCCC
Confidence 9999999999999765421 11222478999999999 89999999999876543 235
Q ss_pred cEEEEEeecccEEEE
Q 003093 308 AYEIINVIGTGYRRI 322 (848)
Q Consensus 308 ~~~I~~~~~~~~~~V 322 (848)
.+.|+++++|+++.+
T Consensus 371 ~~~i~~~~~G~~~~~ 385 (386)
T 3sg0_A 371 SAFLIEIRDGAFRLK 385 (386)
T ss_dssp GCEEEEEETTEEEEC
T ss_pred ceEEEEEECCEEEec
Confidence 689999999988765
No 32
>3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B
Probab=99.96 E-value=2.4e-28 Score=268.94 Aligned_cols=267 Identities=13% Similarity=0.107 Sum_probs=217.8
Q ss_pred CCCeEEEEccCCchhHHHHHHhhccCCccEEecccCCCCCCC-CCCCceEeccCChHHHHHHHHHHHHHcCcEEEEEEEE
Q 003093 2 EGQTVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSS-LQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYV 80 (848)
Q Consensus 2 ~~~V~aiIGp~~S~~~~ava~i~~~~~vP~Is~~at~p~ls~-~~~p~f~r~~p~d~~q~~ai~~~~~~~~w~~vaii~~ 80 (848)
+++|++||||.+|..+.+++++++++++|+|++.++++.+++ ..+||+||+.|++..++.+++.++++++| +|++|+.
T Consensus 71 ~~~v~aiiG~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~fr~~~~~~~~~~~~~~~~~~~~~-~v~ii~~ 149 (374)
T 3n0x_A 71 DDGADIAIGTSSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIGKQGV-TIATLAQ 149 (374)
T ss_dssp TSCCSEEEECSSHHHHHHHHHHHHHHTCCEEECSCCCGGGGTTTCCTTEEECSCCHHHHHHHHHHHHCCTTE-EEEEEEE
T ss_pred hCCceEEEcCCCcHHHHHHHHHHHHcCccEEEcCCCchhhhcCCCCCeEEEccCCchhHHHHHHHHHhccCC-EEEEEeC
Confidence 368999999999999999999999999999998888888887 45899999999999999999988888998 7999999
Q ss_pred cCCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCC-----CeEEEEEccCCcHHHHHHHHHHcCCC
Q 003093 81 DDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTE-----SRIIVVHTHYNRGPVVFHVAQYLGML 155 (848)
Q Consensus 81 dd~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~-----~~viv~~~~~~~~~~~~~~a~~~g~~ 155 (848)
|++||+...+.|.+.+++.|++|+..+.++.+. .|++.++++|++.+ +|+|++....... .+.+++++++.
T Consensus 150 ~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~--~d~~~~l~~i~~~~~~~~~~d~v~~~~~g~~~--~~~~~~~~~~~ 225 (374)
T 3n0x_A 150 DYAFGRDGVAAFKEALAKTGATLATEEYVPTTT--TDFTAVGQRLFDALKDKPGKKIIWVIWAGGGD--PLTKLQDMDPK 225 (374)
T ss_dssp SSHHHHHHHHHHHHHHTTTTCEEEEEEEECTTC--CCCHHHHHHHHHHHTTCSSEEEEEECCCSSSC--HHHHHHHTCGG
T ss_pred CchHHHHHHHHHHHHHHHcCCEEeeeecCCCCC--ccHHHHHHHHHhcCCCCCCCCEEEEEecCCcH--HHHHHHHcchh
Confidence 999999999999999999999999988888654 78999999999988 9999987544322 34567677765
Q ss_pred CCCeEEEecCccccccCCCCCCCcccccccceeEEEEEe---cCCchhHHHHHHHHHhhccCCCCCCCCCCCcchhhhhh
Q 003093 156 GTGYVWIATSWLSTALDTNSPFPSDVMDDIQGVLTLRTY---TPDSVLKRKFISRWRNLTDAKTPNGYIGLNAYGFYAYD 232 (848)
Q Consensus 156 ~~~~~wi~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~---~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~YD 232 (848)
..++.++..+..... ........|+.+...+ .++.|..++|.++|+++|+ ..|+.+++.+||
T Consensus 226 ~~g~~~~~~~~~~~~--------~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~y~~~~g-------~~p~~~a~~~Yd 290 (374)
T 3n0x_A 226 RYGIELSTGGNILPA--------LAAYKRLPGMEGATYYYYDIPKNPINEWLVTEHQKRFN-------APPDFFTAGGFS 290 (374)
T ss_dssp GGTEEEEECCCCTTG--------GGGGGGSTTCEEEESCCTTSCCSHHHHHHHHHHHHHHS-------SCCCHHHHHHHH
T ss_pred hcCCeeeeccccchh--------hhhhhhhcCccccceeccCCCCCHHHHHHHHHHHHHHC-------CCCChhHHHHHH
Confidence 556665543322111 0111345666665543 3456889999999999997 467889999999
Q ss_pred HHHHHHHHHHHHHhcCCCccccCCCccccccCccccCcccccCChHHHHHHHHhccccccccceEecc-CCCCCCCcEEE
Q 003093 233 TVWLLARAINSFFKQGGNLSFSKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQANMTGTAGPARFNS-HGDLINPAYEI 311 (848)
Q Consensus 233 Av~~~a~Al~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~v~Fd~-~g~~~~~~~~I 311 (848)
|++++++|++++. +. +++.|.++|++++|+|++|+++||+ +|+ ....+.|
T Consensus 291 a~~~l~~Al~~ag---------------------------~~-~~~~v~~aL~~~~~~g~~G~i~f~~~~~~-~~~~~~i 341 (374)
T 3n0x_A 291 AAMAVVTAVQKAK---------------------------ST-DTEKLIAAMEGMEFDTPKGKMVFRKEDHQ-ALQSMYH 341 (374)
T ss_dssp HHHHHHHHHHHHT---------------------------SC-CHHHHHHHHTTCEEEETTEEEEECTTTCB-EECCEEE
T ss_pred HHHHHHHHHHHhC---------------------------CC-CHHHHHHHHhcCCccCCCCCEEECcccCc-cccceEE
Confidence 9999999999952 22 4899999999999999999999995 455 4578899
Q ss_pred EEeecc
Q 003093 312 INVIGT 317 (848)
Q Consensus 312 ~~~~~~ 317 (848)
++++..
T Consensus 342 ~~~~~~ 347 (374)
T 3n0x_A 342 FKVKVD 347 (374)
T ss_dssp EEEECC
T ss_pred EEEEeC
Confidence 998753
No 33
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=99.96 E-value=6.9e-28 Score=263.13 Aligned_cols=273 Identities=16% Similarity=0.229 Sum_probs=221.6
Q ss_pred CCCeEEEEccCCchhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEeccCChHHHHHHHHHHHHHcCc-EEEEEEEE
Q 003093 2 EGQTVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGW-REVIAIYV 80 (848)
Q Consensus 2 ~~~V~aiIGp~~S~~~~ava~i~~~~~vP~Is~~at~p~ls~~~~p~f~r~~p~d~~q~~ai~~~~~~~~w-~~vaii~~ 80 (848)
+++|++|+||.+|..+.+++++++++++|+|+++++++.++. .++|+||+.|++..|+.+++.++...++ +++++++.
T Consensus 73 ~~~v~~i~g~~~s~~~~a~~~~~~~~~vp~i~~~~~~~~l~~-~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (353)
T 4gnr_A 73 QSKVSAVVGPATSGATAAAVANATKAGVPLISPSATQDGLTK-GQDYLFIGTFQDSFQGKIISNYVSEKLNAKKVVLYTD 151 (353)
T ss_dssp TSCCSEEECCCSHHHHHHHHHHHHHTTCCEEESSCCCTTTTT-TCTTEEECSCCHHHHHHHHHHHHHHTSCCSEEEEEEE
T ss_pred hCCceEEeccccCcccceehhhhhccCcceEeeccccccccc-CCccccccCCCcHHHHHHHHHHHHHhcCCcEEEEEEc
Confidence 467999999999999999999999999999999999998875 4589999999999999999999866554 45555554
Q ss_pred c-CCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccCCcHHHHHHHHHHcCCCCCCe
Q 003093 81 D-DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGY 159 (848)
Q Consensus 81 d-d~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~ 159 (848)
+ ++||++..+.+.+ +.|++|+..+.++.+. .|++.++.+|++.++|+|++.+...++..++++++++|+..+
T Consensus 152 ~~~~yg~~~~~~~~~---~~g~~vv~~~~~~~~~--~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~-- 224 (353)
T 4gnr_A 152 NASDYAKGIAKSFRE---SYKGEIVADETFVAGD--TDFQAALTKMKGKDFDAIVVPGYYNEAGKIVNQARGMGIDKP-- 224 (353)
T ss_dssp TTCHHHHHHHHHHHH---HCCSEEEEEEEECTTC--CCCHHHHHHHHTSCCSEEECCSCHHHHHHHHHHHHHTTCCSC--
T ss_pred CchHHHHHHHHHHHH---HcCCEEEEEEeeCCCC--CCHHHHHHHHHhcCCCEEEEecCcHHHHHHHHHHHHcCCCCc--
Confidence 4 3588777766654 4588999998888765 789999999999999999999999999999999999998643
Q ss_pred EEEecCccccccCCCCCCCcccccccceeEEEEEecC---CchhHHHHHHHHHhhccCCCCCCCCCCCcchhhhhhHHHH
Q 003093 160 VWIATSWLSTALDTNSPFPSDVMDDIQGVLTLRTYTP---DSVLKRKFISRWRNLTDAKTPNGYIGLNAYGFYAYDTVWL 236 (848)
Q Consensus 160 ~wi~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~---~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~YDAv~~ 236 (848)
|+.++++....... ....+..+|++....+.+ .++..++|.++|+++|+ ..|+.+++++|||+++
T Consensus 225 -~~~~~~~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g-------~~p~~~a~~~Yda~~~ 292 (353)
T 4gnr_A 225 -IVGGDGFNGEEFVQ----QATAEKASNIYFISGFSTTVEVSAKAKAFLDAYRAKYN-------EEPSTFAALAYDSVHL 292 (353)
T ss_dssp -EEECGGGCSHHHHH----HHCTTTCCSEEEEESCCSSSSCCHHHHHHHHHHHHHHS-------SCCCHHHHHHHHHHHH
T ss_pred -EEEecccccchhhh----hhhhhhhcCccccccccCCCCCCHHHHHHHHHHHHHhC-------CCCChhHHHHHHHHHH
Confidence 55555443321110 122456788877766543 35788999999999997 4678899999999999
Q ss_pred HHHHHHHHHhcCCCccccCCCccccccCccccCcccccCChHHHHHHHHhc-cccccccceEeccCCCCCCCcEEEEEee
Q 003093 237 LARAINSFFKQGGNLSFSKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQA-NMTGTAGPARFNSHGDLINPAYEIINVI 315 (848)
Q Consensus 237 ~a~Al~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~l~~~l~~~-~f~G~tG~v~Fd~~g~~~~~~~~I~~~~ 315 (848)
+++|++++ + +++.+.++|+++ +|+|++|+++||++|++. ..+.|++++
T Consensus 293 la~Ai~~a---------------------------~---~~~~v~~aL~~~~~~~g~~G~i~f~~~g~~~-~~~~i~~v~ 341 (353)
T 4gnr_A 293 VANAAKGA---------------------------K---NSGEIKDNLAXTKDFEGVTGQTSFDADHNTV-KTAYMMTMN 341 (353)
T ss_dssp HHHHHTTC---------------------------S---SHHHHHHHHHTCCCEEETTEEECCCTTSCCC-CCEEEEEEE
T ss_pred HHHHHhcC---------------------------C---CHHHHHHHHHhcCCCccCceeEEECCCcCCc-CCeEEEEEE
Confidence 99999762 1 378899999988 599999999999999964 667899999
Q ss_pred cccEEEEEEe
Q 003093 316 GTGYRRIGYW 325 (848)
Q Consensus 316 ~~~~~~Vg~w 325 (848)
+|+++.+...
T Consensus 342 ~Gk~~~~~~v 351 (353)
T 4gnr_A 342 NGKVEAAEVV 351 (353)
T ss_dssp TTEEEEEEEE
T ss_pred CCEEEEEEEe
Confidence 9998877543
No 34
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=99.95 E-value=9.2e-28 Score=263.06 Aligned_cols=281 Identities=15% Similarity=0.122 Sum_probs=230.9
Q ss_pred CCeEEEEccCCchhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEeccCChHHHHHHHHHHHHHcCcEEEEEEEEcC
Q 003093 3 GQTVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDD 82 (848)
Q Consensus 3 ~~V~aiIGp~~S~~~~ava~i~~~~~vP~Is~~at~p~ls~~~~p~f~r~~p~d~~q~~ai~~~~~~~~w~~vaii~~dd 82 (848)
++|++||||.+|..+.++++++.+.++|+|+++++ + +....+|++||+.+++..++.++++++.++||++|++|+.++
T Consensus 68 ~~v~~iig~~~s~~~~~~~~~~~~~~ip~v~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~ 145 (362)
T 3snr_A 68 SKADVIMGSSVTPPSVAISNVANEAQIPHIALAPL-P-ITPERAKWSVVMPQPIPIMGKVLYEHMKKNNVKTVGYIGYSD 145 (362)
T ss_dssp SCCSEEEECSSHHHHHHHHHHHHHHTCCEEESSCC-C-CCTTTTTTEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESS
T ss_pred cCceEEEcCCCcHHHHHHHHHHHHcCccEEEecCC-c-cccCCCCcEEecCCChHHHHHHHHHHHHhcCCCEEEEEecCc
Confidence 48999999999999999999999999999998877 4 344568999999999999999999999999999999999999
Q ss_pred CCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccCCcHHHHHHHHHHcCCCCCCeEEE
Q 003093 83 DHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWI 162 (848)
Q Consensus 83 ~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~~wi 162 (848)
+||+...+.+.+++++.|++++....++.+. .++...+.++++.++|+|++.+....+..++++++++|+..+ ++
T Consensus 146 ~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~--~~~~~~~~~l~~~~~dav~~~~~~~~a~~~~~~~~~~g~~~p---~i 220 (362)
T 3snr_A 146 SYGDLWFNDLKKQGEAMGLKIVGEERFARPD--TSVAGQALKLVAANPDAILVGASGTAAALPQTTLRERGYNGL---IY 220 (362)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEEEECTTC--SCCHHHHHHHHHHCCSEEEEECCHHHHHHHHHHHHHTTCCSE---EE
T ss_pred hHHHHHHHHHHHHHHHcCCEEEEEeecCCCC--CCHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCCcc---EE
Confidence 9999999999999999999998877777543 678889999999999999999888899999999999999654 46
Q ss_pred ecCccccccCCCCCCCcccccccceeEEEEEe----------cCCchhHHHHHHHHHhhccCCCCCCCCCCCcchhhhhh
Q 003093 163 ATSWLSTALDTNSPFPSDVMDDIQGVLTLRTY----------TPDSVLKRKFISRWRNLTDAKTPNGYIGLNAYGFYAYD 232 (848)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~----------~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~YD 232 (848)
...++...... ......++|++....+ .|..+..++|.++|+++|+. ..|+.+++.+||
T Consensus 221 ~~~g~~~~~~~-----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~------~~p~~~~~~~yd 289 (362)
T 3snr_A 221 QTHGAASMDFI-----RIAGKSAEGVLMASGPVMDPEGQDDTALTKKPGMALVKVYEEKYGP------SSRSQFAGHSYD 289 (362)
T ss_dssp ECGGGCSHHHH-----HHHGGGGTTCEEEECGGGCSTTSCTTCTTHHHHHHHHHHHHHHHCT------TCCCHHHHHHHH
T ss_pred eccCcCcHHHH-----HHhHHHhCCCEEecccccccccCCCcCcccHHHHHHHHHHHHHhCC------CCCCchhHhHHH
Confidence 55544332111 2334678898887642 12346789999999999972 257889999999
Q ss_pred HHHHHHHHHHHHHhcCCCccccCCCccccccCccccCcccccCChHHHHHHHHhc-cccccccceEeccCCCC--CCCcE
Q 003093 233 TVWLLARAINSFFKQGGNLSFSKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQA-NMTGTAGPARFNSHGDL--INPAY 309 (848)
Q Consensus 233 Av~~~a~Al~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~l~~~l~~~-~f~G~tG~v~Fd~~g~~--~~~~~ 309 (848)
|++++++|++++.+... .+...+++.|.++|+++ +|+|++|+++|+++++. ....+
T Consensus 290 a~~~~~~al~~a~~~~~---------------------~g~~~~~~~~~~al~~~~~~~g~~G~~~f~~~~~~g~~~~~~ 348 (362)
T 3snr_A 290 AFKVLERVVPVALKKAK---------------------PGTQEFREALREAFLTEKDIAASQGVYNFTETDRYGLDDRSR 348 (362)
T ss_dssp HHHHHHHHHHHHHHHCC---------------------TTSHHHHHHHHHHHHHCCCEECSSCEECCCSSCSSCCCGGGC
T ss_pred HHHHHHHHHHHhhcccc---------------------CCCcchHHHHHHHHHhcCCcccceeeEEeCCCCCCCCCCCCe
Confidence 99999999999765421 01222489999999999 89999999999887443 24568
Q ss_pred EEEEeecccEEEE
Q 003093 310 EIINVIGTGYRRI 322 (848)
Q Consensus 310 ~I~~~~~~~~~~V 322 (848)
.|+++++|+++.|
T Consensus 349 ~i~~~~~G~~~~v 361 (362)
T 3snr_A 349 ILLTVKNGKYVIV 361 (362)
T ss_dssp EEEEEETTEEEEC
T ss_pred EEEEEECCEEEEc
Confidence 9999999988764
No 35
>1yae_A Glutamate receptor, ionotropic kainate 2; kainate receptor, membrane protein; HET: NAG FUC DOQ; 3.11A {Rattus norvegicus} SCOP: c.94.1.1
Probab=99.95 E-value=1.9e-27 Score=254.66 Aligned_cols=261 Identities=23% Similarity=0.427 Sum_probs=195.9
Q ss_pred CCceEEEEecCCCCccceEEeC-------CCcceeeeeHHHHHHHHHhCCCCcceEEee---CCCCCC-CCChhHHHHHH
Q 003093 374 NGRHLRIGVPNRVSFREFVSVK-------GSEMTSGFCIDVFTAAINLLPYAVPYKLIP---FGDGHN-NPSCTELVRLI 442 (848)
Q Consensus 374 ~g~~lrv~v~~~~~~~p~~~~~-------~~~~~~G~~~dll~~i~~~l~~~~~~~~~~---~~~~~~-n~s~~~~i~~l 442 (848)
.+++||||+.. ++||.+.+ +++++.||++||++++++++|++++++.++ ||.... +++|++++.+|
T Consensus 11 ~~~~l~V~~~~---~~P~~~~~~~~~~~~~~g~~~G~~vdl~~~ia~~lg~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l 87 (312)
T 1yae_A 11 SNRSLIVTTIL---EEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVREL 87 (312)
T ss_dssp CSCEEEEEECC---BTTTBEECCCSSCCCGGGGEESHHHHHHHHHHHHHCCEEEEEECSSCCCCCBCTTTCCBCSHHHHH
T ss_pred cCceEEEEEec---cCCeeEEeccccccCCCceEEEEEHHHHHHHHHHcCCeEEEEecCCCccceeccCCCcchHHHHHH
Confidence 46789999985 36776643 578999999999999999999997777654 333322 57899999999
Q ss_pred hcCeeeEEeeceeeecCceeeeeecccccccceEEEEeccC-CCCCcccccccCchhhHHHHHHHHHHHHHHhhhhhccc
Q 003093 443 TAGVYDAAVGDIAIITNRTKMADFTQPYIESGLVVVAPVRK-LDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRL 521 (848)
Q Consensus 443 ~~g~~D~~~~~~~~t~~R~~~~dfs~p~~~~~~~~v~~~~~-~~~~~~~fl~PF~~~vW~~~~~~~~~~~~v~~~~~~~~ 521 (848)
.+|++|++++++++|++|.+.++||.||+..+.+++++++. ...++|.|+.||+..
T Consensus 88 ~~g~~D~~~~~~~~t~eR~~~~~fs~py~~~~~~~~~~~~~~~~~~~~~~~~pf~~~----------------------- 144 (312)
T 1yae_A 88 IDHKADLAVAPLAITYVREKVIDFSKPFMTLGISILYRKPNGTNPGVFSFLNGGSLV----------------------- 144 (312)
T ss_dssp HTTSCSEECSSCBCCHHHHHHEEEEEEEEEECEEEEEEC-----------------------------------------
T ss_pred hCCCcCEEeecceechhhcceEEecceeeecceEEEEeCCccccccceeeecccccC-----------------------
Confidence 99999999999999999999999999999999999999876 567899999999910
Q ss_pred CCCCCCCCCCCcchhhhhHHHHhhhcCccccccchhHHHHHHHHhhhhhhhccccceeeeeeeeccccCCCCChHHhhcC
Q 003093 522 NDEFRGPPKRQVVTIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSS 601 (848)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~s 601 (848)
|+ |++++...|++++||.
T Consensus 145 ------------------------------p~------------------------------tv~~~~~~i~~~~dL~-- 162 (312)
T 1yae_A 145 ------------------------------PR------------------------------GSERMESPIDSADDLA-- 162 (312)
T ss_dssp ----------------------------------------------------------------------CCSHHHHH--
T ss_pred ------------------------------Cc------------------------------ccccccCCCCCHHHHh--
Confidence 10 4455567899999999
Q ss_pred CC---CeeEEeCchHHHHHHhhhCCC-----------ccCcccCCCHHHHHHHhhcCCCCCceEEEEccHHHHHHHHhcC
Q 003093 602 NY---PIGYQVNSFARNYLVDELNID-----------ESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTR 667 (848)
Q Consensus 602 ~~---~i~~~~~s~~~~~l~~~~~~~-----------~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~ 667 (848)
++ ++|+..++....++.+. ... ..+++.+.+.++++++|.+ |+ ||++.+...+.|++++.
T Consensus 163 g~~~~~vg~v~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----G~-Da~i~~~~~~~~~~~~~ 236 (312)
T 1yae_A 163 KQTKIEYGAVEDGATMTFFKKS-KISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLT----SD-YAFLMESTTIEFVTQRN 236 (312)
T ss_dssp TCSSSEEECBTTSHHHHHHHHC-CBHHHHHHHHHHHHTHHHHCBSSHHHHHHHHHH----SS-EEEEEEHHHHHHHHTTC
T ss_pred hccCceEEEEeCChHHHHHHhc-cCchHHHHHHHHHhcCCCcccCCHHHHHHHHHc----CC-cEEEeccHHHHHHHhcC
Confidence 55 68877666566666431 111 0245678899999999999 89 99999999999999988
Q ss_pred CcEEEeCCccccCCceeeecCCCCchHHHHHHHHhhhccCchHHHHHhhcccCCCCCCCCC
Q 003093 668 CEFSIVGQVFTKNGWGFAFPRDSPLAVDISTAILKLSENGDLQRIHDKWLLRSACSSQGAK 728 (848)
Q Consensus 668 ~~l~~~~~~~~~~~~~~~~~k~spl~~~in~~i~~l~e~G~~~~~~~kw~~~~~c~~~~~~ 728 (848)
|++.++++.+...+++++++|++||++.||++|.+|.++|.+++|.+||+....|......
T Consensus 237 ~~l~~~~~~~~~~~~~~a~~k~~~l~~~in~~l~~l~~~G~~~~i~~kw~~~~~c~~~~~~ 297 (312)
T 1yae_A 237 CNLTQIGGLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHMMKEKWWRGNGCPEEESK 297 (312)
T ss_dssp TTEEEESSCSSCEEEEEEEETTCSSHHHHHHHHHHHHHHTHHHHHHHHHHCCSCC------
T ss_pred CCEEEecccccccceEEEEeCCCCcHHHHHHHHHHHHHcCCHHHHHhhhcCCCCCCCCCCc
Confidence 9999999888888999999999999999999999999999999999999998899876544
No 36
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A
Probab=99.94 E-value=2.7e-26 Score=253.63 Aligned_cols=282 Identities=11% Similarity=0.056 Sum_probs=228.0
Q ss_pred CCCeEEEEccCCchhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEeccCChHHHHHHHHHHHHHcCcEEEEEEEEc
Q 003093 2 EGQTVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVD 81 (848)
Q Consensus 2 ~~~V~aiIGp~~S~~~~ava~i~~~~~vP~Is~~at~p~ls~~~~p~f~r~~p~d~~q~~ai~~~~~~~~w~~vaii~~d 81 (848)
+++|++||||.+|..+.++++++.+.++|+|+++++.. ...+|++||+.+++..++..+++++...+|++|++|+.+
T Consensus 73 ~~~v~~iig~~~s~~~~~~~~~~~~~~iP~v~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~l~~~g~~~ia~i~~~ 149 (385)
T 1pea_A 73 NRGVRFLVGCYMSHTRKAVMPVVERADALLCYPTPYEG---FEYSPNIVYGGPAPNQNSAPLAAYLIRHYGERVVFIGSD 149 (385)
T ss_dssp TTCCCEEEECCSHHHHHHHHHHHHHTTCEEEECSCCCC---CCCCTTEEECSCCGGGTHHHHHHHHHTTTCSEEEEEEES
T ss_pred hCCcEEEECCCchHHHHHHHHHHHhcCceEEECCcccC---ccCCCCEEEecCChHHhHHHHHHHHHHccCcEEEEEeCC
Confidence 36899999999999899999999999999999866421 124689999999999999999999998899999999998
Q ss_pred CCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccCCcHHHHHHHHHHcCCCCCCeEE
Q 003093 82 DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVW 161 (848)
Q Consensus 82 d~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~~w 161 (848)
++||....+.|.+++++.|++++....++...+..++...+++|++.++|+|++.+....+..++++++++|+..+.+.+
T Consensus 150 ~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~d~~~~~~~l~~~~pdaI~~~~~~~~a~~~~~~~~~~G~~~~~~~~ 229 (385)
T 1pea_A 150 YIYPRESNHVMRHLYRQHGGTVLEEIYIPLYPSDDDLQRAVERIYQARADVVFSTVVGTGTAELYRAIARRYGDGRRPPI 229 (385)
T ss_dssp SHHHHHHHHHHHHHHHHTTCEEEEEEEECSSCCHHHHHHHHHHHHHHTCSEEEEECCTHHHHHHHHHHHHHHCSSCCCCE
T ss_pred ChHHHHHHHHHHHHHHHcCCEEEEEEeecCCCCcchHHHHHHHHHHCCCCEEEEecccccHHHHHHHHHHcCCCcCCceE
Confidence 88999999999999999999988765565433558899999999988999999988777899999999999996544555
Q ss_pred EecCccccccCCCCCCCcccccccceeEEEEEecC--CchhHHHHHHHHHhhccCCCCCCCCCCCcchhhhhhHHHHHHH
Q 003093 162 IATSWLSTALDTNSPFPSDVMDDIQGVLTLRTYTP--DSVLKRKFISRWRNLTDAKTPNGYIGLNAYGFYAYDTVWLLAR 239 (848)
Q Consensus 162 i~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~YDAv~~~a~ 239 (848)
+..++....+. ....++++|++...++.+ +.+..++|.++|+++|+. ...++.+++.+|||++++++
T Consensus 230 ~~~~~~~~~~~------~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~g~-----~~~~~~~~~~~yda~~~~~~ 298 (385)
T 1pea_A 230 ASLTTSEAEVA------KMESDVAEGQVVVAPYFSSIDTPASRAFVQACHGFFPE-----NATITAWAEAAYWQTLLLGR 298 (385)
T ss_dssp EESSCCHHHHT------TSCHHHHTTCEEEESCCTTCSSHHHHHHHHHHHTTSCT-----TCCCCHHHHHHHHHHHHHHH
T ss_pred EecccchHHHH------hcCchhhCCeEEecccccccCCHHHHHHHHHHHHHhCC-----CCCCChHHHHHHHHHHHHHH
Confidence 55443221111 112246789888876643 468899999999998862 12467899999999999999
Q ss_pred HHHHHHhcCCCccccCCCccccccCccccCcccccCChHHHHHHHHhccccccccceEeccCCCCCCCcEEEEEe-eccc
Q 003093 240 AINSFFKQGGNLSFSKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQANMTGTAGPARFNSHGDLINPAYEIINV-IGTG 318 (848)
Q Consensus 240 Al~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~v~Fd~~g~~~~~~~~I~~~-~~~~ 318 (848)
|++++. +. +++.|.++|++++|+|++|+++||++++.....+.|.++ ++|+
T Consensus 299 Al~~ag---------------------------~~-~~~~l~~al~~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~~~g~ 350 (385)
T 1pea_A 299 AAQAAG---------------------------NW-RVEDVQRHLYDIDIDAPQGPVRVERQNNHSRLSSRIAEIDARGV 350 (385)
T ss_dssp HHHHHT---------------------------SC-CHHHHHHHHTTCCEEETTEEEEECTTTSCEEBCCEEEEECTTSC
T ss_pred HHHHhC---------------------------CC-CHHHHHHHHhhCcccCCCCCeEEcCCCCccccceEEEEEcCCCc
Confidence 999952 12 389999999999999999999999855444567889999 7888
Q ss_pred EEEEEEe
Q 003093 319 YRRIGYW 325 (848)
Q Consensus 319 ~~~Vg~w 325 (848)
++.|...
T Consensus 351 ~~~v~~~ 357 (385)
T 1pea_A 351 FQVRWQS 357 (385)
T ss_dssp EEEEEEC
T ss_pred EEEeecC
Confidence 8887654
No 37
>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2xxr_A* 2xxt_A* 2xxx_A* 2xxw_A* 2xxy_A* 2xxu_A* 2xxv_A* 3qxm_A* 2i0c_A* ...
Probab=99.93 E-value=3.1e-25 Score=230.73 Aligned_cols=232 Identities=24% Similarity=0.421 Sum_probs=194.2
Q ss_pred CCceEEEEecCCCCccceEEeC-C------CcceeeeeHHHHHHHHHhCCCCcceEEeeCCC---CCC-CCChhHHHHHH
Q 003093 374 NGRHLRIGVPNRVSFREFVSVK-G------SEMTSGFCIDVFTAAINLLPYAVPYKLIPFGD---GHN-NPSCTELVRLI 442 (848)
Q Consensus 374 ~g~~lrv~v~~~~~~~p~~~~~-~------~~~~~G~~~dll~~i~~~l~~~~~~~~~~~~~---~~~-n~s~~~~i~~l 442 (848)
.+++|||++... +||.+.+ . ++++.||++||++++++++|++++++.++.+. ... +++|.+++.+|
T Consensus 2 ~~~~l~v~~~~~---~P~~~~~~~~~~~~~~g~~~G~~vdl~~~ia~~lg~~~~~~~~p~~~~g~~~~~~~~~~~~~~~l 78 (259)
T 3g3k_A 2 SNRSLIVTTILE---EPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTHLGFTYEIRLVEDGKYGAQDDVNGQWNGMVREL 78 (259)
T ss_dssp -CCCEEEEECCB---TTTBEECCCSSCCCGGGGEESHHHHHHHHHHHHHTCCEEEEECTTCCCCCBCTTTCCBCHHHHHH
T ss_pred CCcEEEEEEecC---CCeEEEeecccccCCCceeeeEHHHHHHHHHHHcCCeEEEEECCCCCcCcccCCCCcchHHHHHH
Confidence 367899999854 5666632 2 58999999999999999999998887766322 111 56899999999
Q ss_pred hcCeeeEEeeceeeecCceeeeeecccccccceEEEEeccCCCCCcccccccCchhhHHHHHHHHHHHHHHhhhhhcccC
Q 003093 443 TAGVYDAAVGDIAIITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLN 522 (848)
Q Consensus 443 ~~g~~D~~~~~~~~t~~R~~~~dfs~p~~~~~~~~v~~~~~~~~~~~~fl~PF~~~vW~~~~~~~~~~~~v~~~~~~~~~ 522 (848)
.+|++|++++++++|++|.+.++||.||+..+.+++++++.
T Consensus 79 ~~g~~D~~~~~~~~t~eR~~~~~fs~py~~~~~~~~~~~~~--------------------------------------- 119 (259)
T 3g3k_A 79 IDHKADLAVAPLAITYVREEVIDFSKPFMTLGISILYRKGT--------------------------------------- 119 (259)
T ss_dssp HTTSCSEECSSCBCCHHHHTTEEECSCSEEECEEEEEESSS---------------------------------------
T ss_pred hcCcccEEEeeeEecccccceEeeeeeeeeCCEEEEEeCCc---------------------------------------
Confidence 99999999999999999999999999999999999998764
Q ss_pred CCCCCCCCCCcchhhhhHHHHhhhcCccccccchhHHHHHHHHhhhhhhhccccceeeeeeeeccccCCCCChHHhhcCC
Q 003093 523 DEFRGPPKRQVVTIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSN 602 (848)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~s~ 602 (848)
+|++++||. +
T Consensus 120 --------------------------------------------------------------------~i~~~~dL~--g 129 (259)
T 3g3k_A 120 --------------------------------------------------------------------PIDSADDLA--K 129 (259)
T ss_dssp --------------------------------------------------------------------SCCSHHHHH--T
T ss_pred --------------------------------------------------------------------cccCHHHhc--c
Confidence 588999998 5
Q ss_pred CC---eeEEeCchHHHHHHhhhCCC-----------ccCcccCCCHHHHHHHhhcCCCCCceEEEEccHHHHHHHHhcCC
Q 003093 603 YP---IGYQVNSFARNYLVDELNID-----------ESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRC 668 (848)
Q Consensus 603 ~~---i~~~~~s~~~~~l~~~~~~~-----------~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~ 668 (848)
++ +|+..++....++.+. +.. ...++.+++.++++++|.. |+ +|++.+...+.|+.++.|
T Consensus 130 ~~~~~ig~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----g~-da~i~~~~~~~~~~~~~~ 203 (259)
T 3g3k_A 130 QTKIEYGAVEDGATMTFFKRS-KISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLT----SD-YAFLMESTTIEFVTQRNC 203 (259)
T ss_dssp CSSSEEEEETTSHHHHHHHHC-CSHHHHHHHHHHHHTHHHHEESSHHHHHHHHHH----SS-EEEEEEHHHHHHHHHHCT
T ss_pred CCCceEEEecCcHHHHHHhhc-cchhHHHHHHHHHhcCCCcccCCHHHHHHHHHh----CC-eEEEechHHHHHHhcCCc
Confidence 55 8888877777776442 111 1133567899999999999 78 999999999999999899
Q ss_pred cEEEeCCccccCCceeeecCCCCchHHHHHHHHhhhccCchHHHHHhhcccCCCC
Q 003093 669 EFSIVGQVFTKNGWGFAFPRDSPLAVDISTAILKLSENGDLQRIHDKWLLRSACS 723 (848)
Q Consensus 669 ~l~~~~~~~~~~~~~~~~~k~spl~~~in~~i~~l~e~G~~~~~~~kw~~~~~c~ 723 (848)
++.+++..+...+++++++|++||++.||++|.+|.++|.+++|.+||+....|+
T Consensus 204 ~l~~~~~~~~~~~~~~a~~k~~~l~~~in~~l~~l~~~G~~~~i~~kw~~~~~c~ 258 (259)
T 3g3k_A 204 NLTQIGGLIDSKGYGVGTPMGSPYRDKITLAILKLQEQGKLHMMKEKWWRGNGCP 258 (259)
T ss_dssp TEEEESSCSSCEEECCEEETTCTHHHHHHHHHHHHHHTC-CHHHHHHHHCC--CC
T ss_pred eEEEecccceeeeEEEEECCCCccHHHHHHHHHHHHhcChHHHHHHhhcCCCCCC
Confidence 9999999888889999999999999999999999999999999999999977786
No 38
>1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A
Probab=99.92 E-value=1.1e-25 Score=238.06 Aligned_cols=236 Identities=22% Similarity=0.386 Sum_probs=190.4
Q ss_pred ceEEEEecCCCCccceEEeCCCcceeeeeHHHHHHHHHhCCCCcceEEeeCCC-CC---C----CCChhHHHHHHhcCee
Q 003093 376 RHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGD-GH---N----NPSCTELVRLITAGVY 447 (848)
Q Consensus 376 ~~lrv~v~~~~~~~p~~~~~~~~~~~G~~~dll~~i~~~l~~~~~~~~~~~~~-~~---~----n~s~~~~i~~l~~g~~ 447 (848)
+.|+||+.. .|+||.+.+.++++.||++||++++++++|++++++.++.|. |. . +++|++++++|.+|++
T Consensus 41 ~~l~vg~~~--~~~P~~~~~~~g~~~G~~vDll~~ia~~lg~~~~~~~~~d~~~g~~~~~~~~~~~~w~~~~~~l~~g~~ 118 (292)
T 1pb7_A 41 KVICTGPND--TSPGSPRHTVPQCCYGFCIDLLIKLARTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLSGQA 118 (292)
T ss_dssp CEEEEEEC----------CEEEEEEESHHHHHHHHHHHHHTCCEEEEECTTCCCCCEEECTTSSCEEECHHHHHHHHTSC
T ss_pred ceeecccCC--CCCCccccccccCcceeHHHHHHHHHHHcCceEEEEEecCCcccccccccccccCcHHHHHHHHHcCCc
Confidence 577888764 677776655578999999999999999999997777654321 11 1 2479999999999999
Q ss_pred eEEeeceeeecCceeeeeecccccccceEEEEeccCCCCCcccccccCchhhHHHHHHHHHHHHHHhhhhhcccCCCCCC
Q 003093 448 DAAVGDIAIITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRG 527 (848)
Q Consensus 448 D~~~~~~~~t~~R~~~~dfs~p~~~~~~~~v~~~~~~~~~~~~fl~PF~~~vW~~~~~~~~~~~~v~~~~~~~~~~~~~~ 527 (848)
|++++++++|++|.+.++||.||+..+.+++++++.
T Consensus 119 D~~~~~~~~t~~R~~~~~fs~Py~~~~~~i~~~~~~-------------------------------------------- 154 (292)
T 1pb7_A 119 DMIVAPLTINNERAQYIEFSKPFKYQGLTILVKKGT-------------------------------------------- 154 (292)
T ss_dssp SEECSSCBCCHHHHTTEEECSCSEEEEEEEEEETTC--------------------------------------------
T ss_pred CEEEeeeEecHHHhcceEechhhHhcCeEEEEECCc--------------------------------------------
Confidence 999999999999999999999999999999998664
Q ss_pred CCCCCcchhhhhHHHHhhhcCccccccchhHHHHHHHHhhhhhhhccccceeeeeeeeccccCCCCChHHhhcCC---CC
Q 003093 528 PPKRQVVTIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSN---YP 604 (848)
Q Consensus 528 ~~~~~~~~~~~~~~~~l~~~~~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~s~---~~ 604 (848)
++++++||...+ ..
T Consensus 155 ---------------------------------------------------------------~i~~~~dl~~~g~~~~~ 171 (292)
T 1pb7_A 155 ---------------------------------------------------------------RITGINDPRLRNPSDKF 171 (292)
T ss_dssp ---------------------------------------------------------------CCCSTTCHHHHSCBTTB
T ss_pred ---------------------------------------------------------------CCCCCcCccccCcccce
Confidence 456667775323 23
Q ss_pred -eeEEeCchHHHHHHhhhCC----CccCcccCCCHHHHHHHhhcCCCCCceEEEEccHHHHHHHHhcCCcEEEeCCcccc
Q 003093 605 -IGYQVNSFARNYLVDELNI----DESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRCEFSIVGQVFTK 679 (848)
Q Consensus 605 -i~~~~~s~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~ 679 (848)
+|+..++....++.+.... +..+++.+.+.++++++|.+ |++||++.+...+.|+++++|++.+++..+..
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----G~vDa~i~d~~~~~~~~~~~~~l~~~~~~~~~ 247 (292)
T 1pb7_A 172 IYATVKQSSVDIYFRRQVELSTMYRHMEKHNYESAAEAIQAVRD----NKLHAFIWDSAVLEFEASQKCDLVTTGELFFR 247 (292)
T ss_dssp CEECBTTSHHHHHHHTCGGGHHHHHHHTTTCBSSHHHHHHHHHT----TSCSEEEEEHHHHHHHHHHCTTEEECSSCSEE
T ss_pred EEEEEcCchHHHHhhhcccHHHHHHHHHhhcCCCHHHHHHHHHc----CCceEEEEcHHHHHHHHhcCCCEEEcCccccC
Confidence 5777888777777432111 12356678899999999999 89999999999999999999999999988888
Q ss_pred CCceeeecCCCCchHHHHHHHHhhhccCchHHHHHhhcccCCCCC
Q 003093 680 NGWGFAFPRDSPLAVDISTAILKLSENGDLQRIHDKWLLRSACSS 724 (848)
Q Consensus 680 ~~~~~~~~k~spl~~~in~~i~~l~e~G~~~~~~~kw~~~~~c~~ 724 (848)
.+++++++|++||++.||++|.+|.++|.+++|.+||+....|..
T Consensus 248 ~~~~ia~~k~~~l~~~in~al~~l~~~G~~~~l~~kw~~~~~c~~ 292 (292)
T 1pb7_A 248 SGFGIGMRKDSPWKQNVSLSILKSHENGFMEDLDKTWVRYQECDS 292 (292)
T ss_dssp EEECCEEETTCSSHHHHHHHHHHHHHSSHHHHHHHHHTSSSCCCC
T ss_pred CceEEEEeCCCHHHHHHHHHHHHHHhCCCHHHHHHhhCCCCCCCC
Confidence 899999999999999999999999999999999999999888863
No 39
>2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B* 3oen_A* 3oel_A* 3oem_A* 3oek_A*
Probab=99.91 E-value=2.5e-25 Score=234.62 Aligned_cols=238 Identities=21% Similarity=0.410 Sum_probs=189.8
Q ss_pred cCCCceEEEEecCCCCccceEEeC----CCcceeeeeHHHHHHHHHhCCCCcceEEeeCCC-CC-CCCChhHHHHHHhcC
Q 003093 372 PNNGRHLRIGVPNRVSFREFVSVK----GSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGD-GH-NNPSCTELVRLITAG 445 (848)
Q Consensus 372 ~~~g~~lrv~v~~~~~~~p~~~~~----~~~~~~G~~~dll~~i~~~l~~~~~~~~~~~~~-~~-~n~s~~~~i~~l~~g 445 (848)
|.+|++|||||+..++|++|.... +.+++.||++||++++++++|+++++..++.+. |. .+++|++++.+|.+|
T Consensus 25 ~~~~~~lrvgv~~~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~i~~~lg~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~g 104 (284)
T 2a5s_A 25 PLTETCVRNTVPCRKFVKINNSTNEGMNVKKCCKGFCIDILKKLSRTVKFTYDLYLVTNGKHGKKVNNVWNGMIGEVVYQ 104 (284)
T ss_dssp CC-CCCCTTCEEEEEEEESSSSSSCEEEEEEEEESHHHHHHHHHHHHHTCCEEEEECCSSSSCCEETTEECHHHHHHHTT
T ss_pred CCCCccccccccccccccccccccCCCCCcceeeEEhHHHHHHHHHHCCCCEEEEEccCCccCcccCCCHHHHHHHHhcC
Confidence 568999999999887777775411 124799999999999999999996666554221 11 357899999999999
Q ss_pred eeeEEeeceeeecCceeeeeecccccccceEEEEeccCCCCCcccccccCchhhHHHHHHHHHHHHHHhhhhhcccCCCC
Q 003093 446 VYDAAVGDIAIITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEF 525 (848)
Q Consensus 446 ~~D~~~~~~~~t~~R~~~~dfs~p~~~~~~~~v~~~~~~~~~~~~fl~PF~~~vW~~~~~~~~~~~~v~~~~~~~~~~~~ 525 (848)
++|+++++++++++|.+.++||.||+..+.+++++++.
T Consensus 105 ~~D~~~~~~~~t~~R~~~~~fs~p~~~~~~~~~~~~~~------------------------------------------ 142 (284)
T 2a5s_A 105 RAVMAVGSLTINEERSEVVDFSVPFVETGISVMVSRGT------------------------------------------ 142 (284)
T ss_dssp SCSEECSSCBCCHHHHTTEEECCCCEEECEEEEEETTC------------------------------------------
T ss_pred CcCEEEEEEEEeccccceEEeccCchhcCEEEEEECCc------------------------------------------
Confidence 99999999999999999999999999999999999765
Q ss_pred CCCCCCCcchhhhhHHHHhhhcCccccccchhHHHHHHHHhhhhhhhccccceeeeeeeeccccCCCCChHHhhc-----
Q 003093 526 RGPPKRQVVTIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRS----- 600 (848)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~l~~~~~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~----- 600 (848)
++++++||..
T Consensus 143 -----------------------------------------------------------------~~~~~~dl~~~~~~~ 157 (284)
T 2a5s_A 143 -----------------------------------------------------------------QVTGLSDKKFQRPHD 157 (284)
T ss_dssp -----------------------------------------------------------------CCCSTTSHHHHSGGG
T ss_pred -----------------------------------------------------------------ccccccccccCChhH
Confidence 2333344332
Q ss_pred --CCCCeeEEeCchHHHHHHhhhCCCc--cCcccC--CCHHHHHHHhhcCCCCCceEEEEccHHHHHHHHhcC--CcEEE
Q 003093 601 --SNYPIGYQVNSFARNYLVDELNIDE--SRLVPL--NSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTR--CEFSI 672 (848)
Q Consensus 601 --s~~~i~~~~~s~~~~~l~~~~~~~~--~~~~~~--~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~--~~l~~ 672 (848)
.+.++|+..++.....+.+. ++. .+++.+ .+.++++++|.. |++||++.+...+.|++++. |++.+
T Consensus 158 l~~~~~vg~v~~~s~~~~l~~~--~~~~~~~i~~~~~~~~~~~l~~l~~----G~vDa~i~d~~~~~~~~~~~~~~~l~~ 231 (284)
T 2a5s_A 158 YSPPFRFGTVPNGSTERNIRNN--YPYMHQYMTRFNQRGVEDALVSLKT----GKLDAFIYDAAVLNYKAGRDEGCKLVT 231 (284)
T ss_dssp SSSCCCEECCTTSHHHHHHHTT--CHHHHHHHGGGCCSSHHHHHHHHHT----TSCSEEEEEHHHHHHHHHTCTTSCEEE
T ss_pred cCCCceEEEEeCCchHHHHHHH--HHHHHHHHHhccCCCHHHHHHHHHc----CCeeEEEEchHHHHHHHhcCCCCCEEE
Confidence 25679977554445555332 221 134555 789999999999 99999999999999999875 78888
Q ss_pred eC--CccccCCceeeecCCCCchHHHHHHHHhhhccCchHHHHHhhcccCCCC
Q 003093 673 VG--QVFTKNGWGFAFPRDSPLAVDISTAILKLSENGDLQRIHDKWLLRSACS 723 (848)
Q Consensus 673 ~~--~~~~~~~~~~~~~k~spl~~~in~~i~~l~e~G~~~~~~~kw~~~~~c~ 723 (848)
++ ..+...+++++++|+++|++.||++|.++.++|.+++|.+||+.. .|.
T Consensus 232 ~~~~~~~~~~~~~~a~~k~~~l~~~ln~~l~~l~~~g~~~~i~~kw~~~-~c~ 283 (284)
T 2a5s_A 232 IGSGYIFATTGYGIALQKGSPWKRQIDLALLQFVGDGEMEELETLWLTG-ICH 283 (284)
T ss_dssp EECCCGGGCEEECCEEETTCTTHHHHHHHHHHHHHHTHHHHHHHHHTCC-CCC
T ss_pred eCCccccccCceEEEecCCCHHHHHHHHHHHHHHhCChHHHHHHHhhhc-cCC
Confidence 84 567778899999999999999999999999999999999999974 675
No 40
>4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A*
Probab=99.91 E-value=2.3e-24 Score=221.82 Aligned_cols=219 Identities=20% Similarity=0.277 Sum_probs=191.0
Q ss_pred ceEEEEecCCCCccceEE---eCCCcceeeeeHHHHHHHHHhCCCCcceEEeeCCCCCCCCChhHHHHHHhcCeeeEEee
Q 003093 376 RHLRIGVPNRVSFREFVS---VKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVG 452 (848)
Q Consensus 376 ~~lrv~v~~~~~~~p~~~---~~~~~~~~G~~~dll~~i~~~l~~~~~~~~~~~~~~~~n~s~~~~i~~l~~g~~D~~~~ 452 (848)
.+|+||+.. +|+||.+ .++++++.||++||++++++++|++++++.. .|.+++.+|.+|++|++++
T Consensus 12 g~L~Vg~~~--~~pP~~~~~~~d~~g~~~G~~vdl~~~ia~~lg~~~~~~~~---------~~~~~~~~l~~g~~d~~~~ 80 (243)
T 4h5g_A 12 GKLVVATSP--DYAPFEFQSLVDGKNQVVGADIDMAQAIADELGVKLEILSM---------SFDNVLTSLQTGKADLAVA 80 (243)
T ss_dssp TEEEEEECC--CBTTTBEEEEETTEEEEESHHHHHHHHHHHHHTSEEEEEEC---------CGGGHHHHHHTTSCSEECS
T ss_pred CEEEEEECC--CCCCcEeeeccCCCCcEEEeHHHHHHHHHHHhCCceEEecc---------cHHHHHHHHHcCCCCcccc
Confidence 479999864 7889877 4678999999999999999999999666554 4999999999999999999
Q ss_pred ceeeecCceeeeeecccccccceEEEEeccCCCCCcccccccCchhhHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCC
Q 003093 453 DIAIITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKRQ 532 (848)
Q Consensus 453 ~~~~t~~R~~~~dfs~p~~~~~~~~v~~~~~~~~~~~~fl~PF~~~vW~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 532 (848)
++++|++|.+.++||.||+..+.++++++.+
T Consensus 81 ~~~~t~eR~~~~~fs~py~~~~~~~~v~~~~------------------------------------------------- 111 (243)
T 4h5g_A 81 GISATDERKEVFDFSIPYYENKISFLVHKAD------------------------------------------------- 111 (243)
T ss_dssp SCBCCHHHHTTEEECSCSBCCCEEEEEEGGG-------------------------------------------------
T ss_pred cccCChhHccEEEccCccccCcccccccccc-------------------------------------------------
Confidence 9999999999999999999999999998765
Q ss_pred cchhhhhHHHHhhhcCccccccchhHHHHHHHHhhhhhhhccccceeeeeeeeccccCCCCChHHhhcCCCCeeEEeCch
Q 003093 533 VVTIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVNSF 612 (848)
Q Consensus 533 ~~~~~~~~~~~l~~~~~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~s~~~i~~~~~s~ 612 (848)
...+++++||. +++||+..|+.
T Consensus 112 --------------------------------------------------------~~~~~~~~dl~--g~~i~v~~g~~ 133 (243)
T 4h5g_A 112 --------------------------------------------------------VEKYKDLTSLE--SANIAAQKGTV 133 (243)
T ss_dssp --------------------------------------------------------TTTCCSHHHHH--TSEEEEETTSH
T ss_pred --------------------------------------------------------cccccccccCC--CCEEEecCCcH
Confidence 14688999998 89999999998
Q ss_pred HHHHHHhhhCCCccCcccCCCHHHHHHHhhcCCCCCceEEEEccHHHHHHHHhcCCcEEEe--C-CccccCCceeeecCC
Q 003093 613 ARNYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRCEFSIV--G-QVFTKNGWGFAFPRD 689 (848)
Q Consensus 613 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~--~-~~~~~~~~~~~~~k~ 689 (848)
...++.+ ..+..+++.+++.++++++|.. |++|+++.+...+.+++.++..+... . ......+++++++|+
T Consensus 134 ~~~~l~~--~~~~~~i~~~~~~~~~~~~l~~----GrvD~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~k~ 207 (243)
T 4h5g_A 134 PESMVKE--QLPKAQLTSLTNMGEAVNELQA----GKIDAVHMDEPVALSYAAKNAGLAVATVSLKMKDGDANAVALRKN 207 (243)
T ss_dssp HHHHHHH--HCTTSEEEEESCHHHHHHHHHH----TSCSEEEEEHHHHHHHHHHCTTEEECSCCCCCCSSCCBCCEEESS
T ss_pred HHHHHHH--hcccceeEEeCCHHHHHHHHHc----CCccEEEecHHHHHHHHHHCCCCceeeccCCcccCceEEEEEeCC
Confidence 8888855 3455688899999999999999 99999999999988888877654433 2 344556789999999
Q ss_pred CC-chHHHHHHHHhhhccCchHHHHHhhcc
Q 003093 690 SP-LAVDISTAILKLSENGDLQRIHDKWLL 718 (848)
Q Consensus 690 sp-l~~~in~~i~~l~e~G~~~~~~~kw~~ 718 (848)
+| |++.||++|.+|.++|.+++|.+||+.
T Consensus 208 ~~~L~~~~n~aL~~l~~dG~~~~i~~Kw~~ 237 (243)
T 4h5g_A 208 SDDLKEVVDKVIQKLKDEGTYQSYLEKAAS 237 (243)
T ss_dssp CHHHHHHHHHHHHHHHHHTHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 98 999999999999999999999999987
No 41
>2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, cell junction, glycoprotein, ION transport channel, magnesium; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A
Probab=99.91 E-value=1.9e-24 Score=229.08 Aligned_cols=217 Identities=25% Similarity=0.456 Sum_probs=180.2
Q ss_pred ceeeeeHHHHHHHHHhCCCCcceEEeeCCC-C-CCCCChhHHHHHHhcCeeeEEeeceeeecCceeeeeecccccccceE
Q 003093 399 MTSGFCIDVFTAAINLLPYAVPYKLIPFGD-G-HNNPSCTELVRLITAGVYDAAVGDIAIITNRTKMADFTQPYIESGLV 476 (848)
Q Consensus 399 ~~~G~~~dll~~i~~~l~~~~~~~~~~~~~-~-~~n~s~~~~i~~l~~g~~D~~~~~~~~t~~R~~~~dfs~p~~~~~~~ 476 (848)
++.||++||++++++++|++++++.++.+. | ..+++|++++++|.+|++|++++++++|++|.+.++||.||+..+.+
T Consensus 67 ~~~G~~vdll~~ia~~lg~~~~~~~~~~~~~g~~~~~~w~~~~~~l~~g~~D~~~~~~~~t~eR~~~~~fs~P~~~~~~~ 146 (294)
T 2rc8_A 67 CCYGYCIDLLEQLAEDMNFDFDLYIVGDGKYGAWKNGHWTGLVGDLLSGTANMAVTSFSINTARSQVIDFTSPFFSTSLG 146 (294)
T ss_dssp EEESHHHHHHHHHHHHHTEEEEEEECTTCCCCCEETTEECHHHHHHHHTSCSEECSSCBCCHHHHTTSEECSCSEEEEEE
T ss_pred CceEEhHHHHHHHHHHcCCcEEEEECCCCcccccCCCCHHHHHHHHHCCCcCEEEeccccCHhHhceEEEccchHhcceE
Confidence 589999999999999999997766554221 1 13568999999999999999999999999999999999999999999
Q ss_pred EEEeccCCCCCcccccccCchhhHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCcchhhhhHHHHhhhcCccccccch
Q 003093 477 VVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKRQVVTIFWFSFSTMFFAHKEKTVSAL 556 (848)
Q Consensus 477 ~v~~~~~~~~~~~~fl~PF~~~vW~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~s~~ 556 (848)
++++++.
T Consensus 147 i~~~~~~------------------------------------------------------------------------- 153 (294)
T 2rc8_A 147 ILVRTRG------------------------------------------------------------------------- 153 (294)
T ss_dssp EEEETTS-------------------------------------------------------------------------
T ss_pred EEEECCC-------------------------------------------------------------------------
Confidence 9999776
Q ss_pred hHHHHHHHHhhhhhhhccccceeeeeeeeccccCCCCChHHhh----cCCCCeeEEeCchHHHHHHhhhCCCc--cCccc
Q 003093 557 GRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLR----SSNYPIGYQVNSFARNYLVDELNIDE--SRLVP 630 (848)
Q Consensus 557 ~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~----~s~~~i~~~~~s~~~~~l~~~~~~~~--~~~~~ 630 (848)
..+++++||. ..++++|+..|+....++.+...... .+...
T Consensus 154 ---------------------------------~~i~~~~dL~~~~~~~g~~vg~~~gs~~~~~l~~~~~~~~~~i~~~~ 200 (294)
T 2rc8_A 154 ---------------------------------TELSGIHDPKLHHPSQGFRFGTVRESSAEDYVRQSFPEMHEYMRRYN 200 (294)
T ss_dssp ---------------------------------CCCCSTTCHHHHSCCTTCCEECBTTSHHHHHHHHHCHHHHHHHGGGC
T ss_pred ---------------------------------CCcCChhhhhhcCcccCeEEEEEcCChHHHHHHHHHHHHHHHHHHhc
Confidence 4677888886 34788999999988888865321100 12335
Q ss_pred CCCHHHHHHHhhcCCCCCceEEEEccHHHHHHHHhc--CCcEEEeCCccccCCceeeecCCCCchHHHHHHHHhhhccCc
Q 003093 631 LNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLST--RCEFSIVGQVFTKNGWGFAFPRDSPLAVDISTAILKLSENGD 708 (848)
Q Consensus 631 ~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~k~spl~~~in~~i~~l~e~G~ 708 (848)
+.+.++.+++|.++ +|++||++.+...+.|++++ .|++.++++.+...+++++++|++||++.||++|.+|.++|.
T Consensus 201 ~~~~~~~~~~l~~~--~GrvDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ia~~k~~~l~~~in~al~~l~~~G~ 278 (294)
T 2rc8_A 201 VPATPDGVQYLKND--PEKLDAFIMDKALLDYEVSIDADCKLLTVGKPFAIEGYGIGLPPNSPLTSNISELISQYKSHGF 278 (294)
T ss_dssp BSSHHHHHHHHHSS--SCCCSEEEEEHHHHHHHHHTCSSSCEEECSCCEEEEEECCEECTTCTHHHHHHHHHHHHHHTTH
T ss_pred CCCHHHHHHHHHhc--cCceeEEEecHHHHHHHHhhCCCCCEEEcCCcccccceEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence 78999999999873 26899999999999999876 478999998888889999999999999999999999999999
Q ss_pred hHHHHHhhcccCCCC
Q 003093 709 LQRIHDKWLLRSACS 723 (848)
Q Consensus 709 ~~~~~~kw~~~~~c~ 723 (848)
+++|.+||+....|.
T Consensus 279 ~~~l~~kw~~~~~c~ 293 (294)
T 2rc8_A 279 MDVLHDKWYKVVPCG 293 (294)
T ss_dssp HHHHHHHHCCC----
T ss_pred HHHHHHhhcCCCCCC
Confidence 999999999988886
No 42
>4gvo_A LMO2349 protein; structural genomics, IDP05245, L-cystine, ABC transporter, periplasmic binding protein, niaid; HET: HIS; 1.45A {Listeria monocytogenes} PDB: 2o1m_A
Probab=99.90 E-value=4.7e-24 Score=219.45 Aligned_cols=222 Identities=16% Similarity=0.212 Sum_probs=186.6
Q ss_pred CCceEEEEecCCCCccceEEeCCCcceeeeeHHHHHHHHHhC-CCCcceEEeeCCCCCCCCChhHHHHHHhcCeeeEEee
Q 003093 374 NGRHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLL-PYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVG 452 (848)
Q Consensus 374 ~g~~lrv~v~~~~~~~p~~~~~~~~~~~G~~~dll~~i~~~l-~~~~~~~~~~~~~~~~n~s~~~~i~~l~~g~~D~~~~ 452 (848)
+.++|+||+.. +|+||.+.+.+|++.||++||+++++++| |++++++.. .|.+++.+|.+|++|++++
T Consensus 7 ~~~tl~vg~~~--~~pP~~~~d~~G~~~G~~vdl~~~ia~~l~g~~~~~~~~---------~~~~~~~~l~~g~~D~~~~ 75 (243)
T 4gvo_A 7 KVQTITVGTGT--QFPNVCFLDENGKLTGYDVELVKEIDKRLPGYKFKFKTM---------DFSNLLVSLGAGKVDIVAH 75 (243)
T ss_dssp -CEEEEEEECS--EETTTEEECTTSCEESHHHHHHHHHHHTCTTEEEEEEEC---------CGGGHHHHHHTTSCSEECS
T ss_pred cCCeEEEEECC--CCCCeEEECCCCcEEEhHHHHHHHHHHhccCCeEEEEEC---------CHHHHHHHHHCCCCCEecc
Confidence 45789999864 79999987788999999999999999998 888666654 3999999999999999999
Q ss_pred ceeeecCceeeeeecccccccceEEEE-eccCCCCCcccccccCchhhHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCC
Q 003093 453 DIAIITNRTKMADFTQPYIESGLVVVA-PVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKR 531 (848)
Q Consensus 453 ~~~~t~~R~~~~dfs~p~~~~~~~~v~-~~~~~~~~~~~fl~PF~~~vW~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 531 (848)
++++|++|.+.++||.||+.....+++ +...
T Consensus 76 ~~~~t~eR~~~~~fs~p~~~~~~~~~~~~~~~------------------------------------------------ 107 (243)
T 4gvo_A 76 QMEKSKEREKKFLFNDVAYNNFPLQLTVLDSN------------------------------------------------ 107 (243)
T ss_dssp CCBCCHHHHHHSEECSSCCEECCEEEEEETTC------------------------------------------------
T ss_pred cCCCCHHHhhhhhhhhhhcccccceEEEeccc------------------------------------------------
Confidence 999999999999999998776555444 4443
Q ss_pred CcchhhhhHHHHhhhcCccccccchhHHHHHHHHhhhhhhhccccceeeeeeeeccccCCCCChHHhhcCCCCeeEEeCc
Q 003093 532 QVVTIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVNS 611 (848)
Q Consensus 532 ~~~~~~~~~~~~l~~~~~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~s~~~i~~~~~s 611 (848)
..+++++||. |++||+..|+
T Consensus 108 ----------------------------------------------------------~~~~~~~dL~--g~~v~v~~gs 127 (243)
T 4gvo_A 108 ----------------------------------------------------------NSINSTKDLA--GKRVITSATS 127 (243)
T ss_dssp ----------------------------------------------------------CSCSSGGGGT--TCEEEECTTC
T ss_pred ----------------------------------------------------------cccCchHHhc--CCeEEEecCc
Confidence 6789999998 9999999998
Q ss_pred hHHHHHHhhh---CCCccCcccCCCHHHHHHHhhcCCCCCceEEEEccHHHHHHHHhcCC-cEEEeCCccccCCceeeec
Q 003093 612 FARNYLVDEL---NIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRC-EFSIVGQVFTKNGWGFAFP 687 (848)
Q Consensus 612 ~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~ 687 (848)
....++.... .........+.+.++++++|.. |++||++.+...+.|+.++.. ++.++++.+...+++++++
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~----GrvDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (243)
T 4gvo_A 128 NGALVLKKINEEQGNNFEIAYEGQGSNDTANQLKT----GRADATISTPFAVDFQNKTSAIKEKVVGDVLSNAKVYFMLG 203 (243)
T ss_dssp HHHHHHHHHHHHTTSCSEEEECCSGGGSHHHHHHH----TSCSBEEECHHHHHHHHHTCSSCEEEEEEEEECCEECCEEC
T ss_pred hHHHHHHHHHHhccccceeccccCChHHHHHHHHc----CCccEEEccHHHHHHHHhhCCCceEEeccCCCCCcEEEEEe
Confidence 7666664321 1111223456788899999999 999999999999998888754 6888888888889999999
Q ss_pred CCCC-chHHHHHHHHhhhccCchHHHHHhhcc
Q 003093 688 RDSP-LAVDISTAILKLSENGDLQRIHDKWLL 718 (848)
Q Consensus 688 k~sp-l~~~in~~i~~l~e~G~~~~~~~kw~~ 718 (848)
|++| |++.||++|.+|.++|.+++|.+||+.
T Consensus 204 k~~~~l~~~in~~l~~l~~~G~~~~i~~kw~g 235 (243)
T 4gvo_A 204 KDETKLSKKVDEALQSIIDDGTLKKLSEKWLG 235 (243)
T ss_dssp TTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHhCcHHHHHHHHHCC
Confidence 9998 999999999999999999999999997
No 43
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0
Probab=99.90 E-value=3.9e-23 Score=211.65 Aligned_cols=218 Identities=18% Similarity=0.274 Sum_probs=195.1
Q ss_pred ceEEEEecCCCCccceEEe-CCCcceeeeeHHHHHHHHHhCCCCcceEEeeCCCCCCCCChhHHHHHHhcCeeeEEeece
Q 003093 376 RHLRIGVPNRVSFREFVSV-KGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDI 454 (848)
Q Consensus 376 ~~lrv~v~~~~~~~p~~~~-~~~~~~~G~~~dll~~i~~~l~~~~~~~~~~~~~~~~n~s~~~~i~~l~~g~~D~~~~~~ 454 (848)
++|+||+.. +|+||.+. +.++++.|+++||++++++++|++++++..+ |.+++.+|.+|++|++++++
T Consensus 3 ~~l~v~~~~--~~~P~~~~~~~~g~~~G~~~dl~~~i~~~~g~~~~~~~~~---------~~~~~~~l~~g~~D~~~~~~ 71 (237)
T 3kzg_A 3 LNLTIGTSK--FNPPFEVWSGNNSSLYGFDIDLMQEICRRLHATCTFEAYI---------FDDLFPALKNREVDLVIASM 71 (237)
T ss_dssp CEEEEEEES--EETTTEECCCTTSCCBSHHHHHHHHHHHHTTCEEEEEEEC---------GGGHHHHHHTTSSSEECSSC
T ss_pred ceEEEEECC--CCCCeEEEeCCCCCEeeehHHHHHHHHHHhCCceEEEEcC---------HHHHHHHHhCCCCCEEEEcc
Confidence 579999983 68999986 7889999999999999999999997777654 99999999999999999999
Q ss_pred eeecCceeeeeecccccccceEEEEeccCCCCCcccccccCchhhHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCcc
Q 003093 455 AIITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKRQVV 534 (848)
Q Consensus 455 ~~t~~R~~~~dfs~p~~~~~~~~v~~~~~~~~~~~~fl~PF~~~vW~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 534 (848)
+.+++|.+.++||.||+..+.++++++..
T Consensus 72 ~~~~~r~~~~~fs~p~~~~~~~~~~~~~~--------------------------------------------------- 100 (237)
T 3kzg_A 72 IITDERKKHFIFSLPYMESNSQYITTVDS--------------------------------------------------- 100 (237)
T ss_dssp BCCTTGGGTCEECCCSBCCEEEEEEETTC---------------------------------------------------
T ss_pred ccChhHhccceeeeeeeecceEEEEECCC---------------------------------------------------
Confidence 99999999999999999999999998765
Q ss_pred hhhhhHHHHhhhcCccccccchhHHHHHHHHhhhhhhhccccceeeeeeeeccccCCCCChHHhhcCCCCeeEEeCchHH
Q 003093 535 TIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVNSFAR 614 (848)
Q Consensus 535 ~~~~~~~~~l~~~~~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~s~~~i~~~~~s~~~ 614 (848)
++++++||. |++||+..|+...
T Consensus 101 --------------------------------------------------------~~~~~~dL~--g~~i~~~~g~~~~ 122 (237)
T 3kzg_A 101 --------------------------------------------------------KISTFDDLH--GKKIGVRKGTPYA 122 (237)
T ss_dssp --------------------------------------------------------SCCSGGGGT--TCEEEEETTSTHH
T ss_pred --------------------------------------------------------CCCCHHHhC--CCEEEEecCCHHH
Confidence 488999998 8999999999877
Q ss_pred HHHHhhhCCCccCcccCCCHHHHHHHhhcCCCCCceEEEEccHHHHHHHHhcCC--------cEEEeCCcc-ccCCceee
Q 003093 615 NYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRC--------EFSIVGQVF-TKNGWGFA 685 (848)
Q Consensus 615 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~--------~l~~~~~~~-~~~~~~~~ 685 (848)
.++.+. .+..+++.+.+.++++++|.+ |++|+++.+...+.+++++.. ++.+++..+ ...+++++
T Consensus 123 ~~~~~~--~~~~~~~~~~~~~~~~~~l~~----G~vDa~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 196 (237)
T 3kzg_A 123 RQVLSE--NRNNQVIFYELIQDMLLGLSN----NQVDASLMDYEAAKYWMASEPYAYKLIGKKYKLIGKKISIGEGYSIM 196 (237)
T ss_dssp HHHHHT--CSSCEEEEESSHHHHHHHHHT----TSSSEEEEEHHHHHHHHTTSSTTHHHHCCSEEEEEEEEECTTCBCCE
T ss_pred HHHHHh--CCCCcEEEeCCHHHHHHHHHc----CCCCEEEeCcHHHHHHHHhCCccccccCCceEEecCccccCccEEEE
Confidence 777553 344677888999999999999 999999999999999998865 788888877 78899999
Q ss_pred ecCCCC-chHHHHHHHHhhhccCchHHHHHhhccc
Q 003093 686 FPRDSP-LAVDISTAILKLSENGDLQRIHDKWLLR 719 (848)
Q Consensus 686 ~~k~sp-l~~~in~~i~~l~e~G~~~~~~~kw~~~ 719 (848)
++|++| +.+.||++|.+|.++|.+++|.+||+..
T Consensus 197 ~~k~~~~l~~~l~~~l~~l~~~G~~~~i~~k~~~~ 231 (237)
T 3kzg_A 197 ANPDQFVLIKKINKILLEMEADGTYLRLYSEYFEG 231 (237)
T ss_dssp ECGGGHHHHHHHHHHHHHHHHSSHHHHHHHHHC--
T ss_pred EcCCCHHHHHHHHHHHHHHHHCCcHHHHHHHHhCc
Confidence 999977 9999999999999999999999999983
No 44
>2h4a_A YRAM (HI1655); perplasmic binding protein, lipoprotein; 1.35A {Haemophilus influenzae} PDB: 3ckm_A
Probab=99.90 E-value=8.5e-24 Score=225.14 Aligned_cols=258 Identities=11% Similarity=0.059 Sum_probs=203.6
Q ss_pred CCCeEEEEccCCchhHHHHHHhh-ccCCccEEecccCCCCCCCCCCCceEeccCChHHHHHHHHHHHHHcCcEEEEEEEE
Q 003093 2 EGQTVAIIGPQDAVTSHVVSHVA-NELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYV 80 (848)
Q Consensus 2 ~~~V~aiIGp~~S~~~~ava~i~-~~~~vP~Is~~at~p~ls~~~~p~f~r~~p~d~~q~~ai~~~~~~~~w~~vaii~~ 80 (848)
+++|++||||.+|+.+.++++++ .+.+||+|++++++ ......+.|+||+.|. .++.++++++...|.|++++|+.
T Consensus 54 ~~~v~~IiGp~~s~~~~a~~~~~~~~~~vp~i~~~~~~-~~~~~~~~~~f~~~~~--~~~~~~a~~a~~~g~k~vail~~ 130 (325)
T 2h4a_A 54 QAGIKTLVGPLLKQNLDVILADPAQIQGMDVLALNATP-NSRAIPQLCYYGLSPE--DEAESAANKMWNDGVRNPLVAMP 130 (325)
T ss_dssp HTTCCEEECCCSHHHHHHHHHCGGGGTTCEEEESCCCS-SCCCCTTEEECCCCHH--HHHHHHHHHHHHTTCCSCEEEEE
T ss_pred HCCCCEEEeeCCHHHHHHHHhhhhccCCCcEEECCCCc-cccCCCCeEEEECCHH--HHHHHHHHHHHHcCCCeEEEEEc
Confidence 57899999999999999999999 88999999987754 3333345678886654 47899999988889999999999
Q ss_pred cCCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccCCcHHHHHHHHHHcCCCCCCeE
Q 003093 81 DDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYV 160 (848)
Q Consensus 81 dd~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~~ 160 (848)
+++||+...+.|.+++++.|++|+..+.+... .||..+|++++ .++|+|++.++..++..+.++++..|. +-.
T Consensus 131 ~~~yG~~~~~~F~~~~~~~Gg~vv~~~~y~~~---~d~~~~l~~i~-~~pDaV~~~~~~~~~~~i~~~~~~~g~---~~p 203 (325)
T 2h4a_A 131 QNDLGQRVGNAFNVRWQQLAGTDANIRYYNLP---ADVTYFVQENN-SNTTALYAVASPTELAEXKGYLTNIVP---NLA 203 (325)
T ss_dssp SSHHHHHHHHHHHHHHHHHHSSCCEEEEESST---THHHHHHHHST-TCCCEEEECCCHHHHHHHHHHHTTTCT---TCE
T ss_pred CCcHHHHHHHHHHHHHHHcCCCcceeEecCCH---HHHHHHHHhcC-CCCCEEEEeCCHHHHhhhhhhHhhcCC---CCC
Confidence 99999999999999999999999998888753 69999999994 789999999999899888888887765 344
Q ss_pred EEecCccc--cccCCCCCCCcccccccceeEEEE-Ee--cCCchhHHHHHHHHHhhccCCCCCCCCCCCcchhhhhhHHH
Q 003093 161 WIATSWLS--TALDTNSPFPSDVMDDIQGVLTLR-TY--TPDSVLKRKFISRWRNLTDAKTPNGYIGLNAYGFYAYDTVW 235 (848)
Q Consensus 161 wi~~~~~~--~~~~~~~~~~~~~~~~~~G~~~~~-~~--~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~YDAv~ 235 (848)
.+.++++. +.. .. ......++|++... ++ .++.+.+++|.++|+..+ .+....+++|||+.
T Consensus 204 l~~~~~~~~~s~~-~~----~~~~~~~~Gv~f~~~p~~~~~~~~~~~~f~~~~~~~~---------~~~rl~AlgyDA~~ 269 (325)
T 2h4a_A 204 IYASSRASASATN-TN----TDFIAQMNGVQFSDIPFFKDTNSPQYQKLAKSTGGEY---------QLMRLYAMGADAWL 269 (325)
T ss_dssp EEECGGGCCHHHH-TC----HHHHHHTTTCEEEECGGGSCCCSHHHHHHHHHTTTCH---------HHHHHHHHHHHHHH
T ss_pred EEEeccccccCCC-CC----chhhhhcCCcEEEccccccCCCcHHHHHHHhccCCCc---------chHHHHHHHHHHHH
Confidence 66776665 221 11 34456799998776 33 345577888888776443 24567799999999
Q ss_pred HHHHHHHHHHhcCCCccccCCCccccccCccccCcccccCChHHHHHHHHhccccccccceEeccCCCCCCCcEEEEEee
Q 003093 236 LLARAINSFFKQGGNLSFSKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQANMTGTAGPARFNSHGDLINPAYEIINVI 315 (848)
Q Consensus 236 ~~a~Al~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~v~Fd~~g~~~~~~~~I~~~~ 315 (848)
+++++ .++. .+.+..|+|+||.++||++|+. .....+.+++
T Consensus 270 l~~~l-~~l~-------------------------------------~~~~~~~~G~tG~l~~~~~g~~-~R~l~~~~~~ 310 (325)
T 2h4a_A 270 LINQF-NELR-------------------------------------QVPGYRLSGLTGILSADTNCNV-ERDMTWYQYQ 310 (325)
T ss_dssp HHHTH-HHHH-------------------------------------HSTTCCEEETTEEEEECTTCBE-EEECEEEEEE
T ss_pred HHHHH-HHHh-------------------------------------hCCCCeeccCceeEEECCCCeE-EEeechhhcc
Confidence 86654 3311 1223579999999999999984 6778999999
Q ss_pred cccEEEE
Q 003093 316 GTGYRRI 322 (848)
Q Consensus 316 ~~~~~~V 322 (848)
+|+++.|
T Consensus 311 ~G~~~~~ 317 (325)
T 2h4a_A 311 DGAIVPV 317 (325)
T ss_dssp TTEEEEC
T ss_pred CCeEEEe
Confidence 9988765
No 45
>1mqi_A Glutamate receptor 2; GLUR2, ligand binding core, S1S2, partial agonist, WILLARDIINES, fluoro-WILLARDIINE, membrane protein; HET: FWD; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1ftj_A* 1ftl_A* 1fto_A 1fw0_A* 1m5b_A* 1ftm_A* 1m5c_A* 1mm6_A* 1mm7_A* 1mqg_A* 1m5e_A* 1mqj_A* 1ms7_A* 1mxu_A* 1mxv_A 1mxw_A 1mxx_A 1mxy_A 1mxz_A 1my0_A ...
Probab=99.90 E-value=7e-23 Score=213.39 Aligned_cols=230 Identities=20% Similarity=0.408 Sum_probs=189.2
Q ss_pred CceEEEEecCCCCccceEEeCC-------CcceeeeeHHHHHHHHHhCCCCcceEEee---CCCCCCCC-ChhHHHHHHh
Q 003093 375 GRHLRIGVPNRVSFREFVSVKG-------SEMTSGFCIDVFTAAINLLPYAVPYKLIP---FGDGHNNP-SCTELVRLIT 443 (848)
Q Consensus 375 g~~lrv~v~~~~~~~p~~~~~~-------~~~~~G~~~dll~~i~~~l~~~~~~~~~~---~~~~~~n~-s~~~~i~~l~ 443 (848)
+++|+|++. +++||.+.+. ++++.||++||++++++++|++++++..+ +|....++ +|.+++.+|.
T Consensus 3 ~~~l~v~~~---~~pP~~~~~~~~~~~~~~g~~~G~~~dl~~~ia~~lg~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~ 79 (263)
T 1mqi_A 3 NKTVVVTTI---LESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELV 79 (263)
T ss_dssp CCCEEEEEC---CBTTTBEECTTGGGCCGGGGEESHHHHHHHHHHHHHTCCEEEEECTTCCCCCBCTTTCCBCHHHHHHH
T ss_pred CeEEEEEEe---cCCCcEEEecCcccccCCCceeeeHHHHHHHHHHHcCceEEEEEccccccCccCCCCCCcHHHHHHHH
Confidence 578999997 4788887443 48999999999999999999997776653 34333344 7999999999
Q ss_pred cCeeeEEeeceeeecCceeeeeecccccccceEEEEeccCCCCCcccccccCchhhHHHHHHHHHHHHHHhhhhhcccCC
Q 003093 444 AGVYDAAVGDIAIITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLND 523 (848)
Q Consensus 444 ~g~~D~~~~~~~~t~~R~~~~dfs~p~~~~~~~~v~~~~~~~~~~~~fl~PF~~~vW~~~~~~~~~~~~v~~~~~~~~~~ 523 (848)
+|++|+++++++++++|.+.++||.||+..+.++++++..
T Consensus 80 ~g~~D~~~~~~~~t~~R~~~~~fs~p~~~~~~~~~~~~~~---------------------------------------- 119 (263)
T 1mqi_A 80 YGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGT---------------------------------------- 119 (263)
T ss_dssp TTSCSEECSSCBCCHHHHTTEEECSCSEEECEEEEEETTC----------------------------------------
T ss_pred cCCcCEEEEeeEecHHHHhhcccccceecccEEEEEcCcc----------------------------------------
Confidence 9999999988999999999999999999999999998754
Q ss_pred CCCCCCCCCcchhhhhHHHHhhhcCccccccchhHHHHHHHHhhhhhhhccccceeeeeeeeccccCCCCChHHhhcCCC
Q 003093 524 EFRGPPKRQVVTIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNY 603 (848)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~s~~ 603 (848)
++++++||. ++
T Consensus 120 -------------------------------------------------------------------~i~~~~dL~--g~ 130 (263)
T 1mqi_A 120 -------------------------------------------------------------------PIESAEDLS--KQ 130 (263)
T ss_dssp -------------------------------------------------------------------SCCSHHHHH--TC
T ss_pred -------------------------------------------------------------------ccCCHHHHh--cc
Confidence 578999998 76
Q ss_pred C---eeEE-eCchHHHHHHhhhCC-----------CccCcccCCCHHHHHHHh--hcCCCCCceEEEEccHHHHHHHHhc
Q 003093 604 P---IGYQ-VNSFARNYLVDELNI-----------DESRLVPLNSPEEYAKAL--KDGPHKGGVAAVVDDRAYAELFLST 666 (848)
Q Consensus 604 ~---i~~~-~~s~~~~~l~~~~~~-----------~~~~~~~~~~~~~~~~~l--~~~~~~~~~~a~~~~~~~~~~~~~~ 666 (848)
+ +|.. .|+. ..++.+. .. ...+++.+.+.++++++| .. |+ +|++.+...+.|+.++
T Consensus 131 ~~~~ig~v~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----g~-da~~~~~~~~~~~~~~ 203 (263)
T 1mqi_A 131 TEIAYGTLDSGST-KEFFRRS-KIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSK----GK-YAYLLESTMNEYIEQR 203 (263)
T ss_dssp SSSEEECBSSSHH-HHHHHHC-CSHHHHHHHHHHHHCSSCCCBSSHHHHHHHHHHTT----TS-EEEEEEHHHHHHHTTS
T ss_pred cCeeEEEEeccHH-HHHHHhc-cchhHHHHHHHHhhCCCceecCCHHHHHHHHhhcC----Cc-EEEEechHHHHHHHhc
Confidence 6 4644 4544 4444331 11 112466788999999999 77 78 7999999999988887
Q ss_pred C-CcEEEeCCccccCCceeeecCCCCchHHHHHHHHhhhccCchHHHHHhhcc-cCCCC
Q 003093 667 R-CEFSIVGQVFTKNGWGFAFPRDSPLAVDISTAILKLSENGDLQRIHDKWLL-RSACS 723 (848)
Q Consensus 667 ~-~~l~~~~~~~~~~~~~~~~~k~spl~~~in~~i~~l~e~G~~~~~~~kw~~-~~~c~ 723 (848)
. +++.++++.+...+++++++|+++|++.||++|.+|.++|.+++|.+||+. ...|+
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~in~~l~~l~~~g~~~~i~~k~~~~~~~C~ 262 (263)
T 1mqi_A 204 KPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDKGECG 262 (263)
T ss_dssp TTCCEEEESCCSCCEEECCEEETTCTTHHHHHHHHHHHHHTTHHHHHHHHHHTTTCSCC
T ss_pred CCCceEEcCCcccccceEEEEeCCCccHHHHHHHHHHHHhcccHHHHHHHHcCCCCCCC
Confidence 5 578888888878889999999999999999999999999999999999998 77786
No 46
>2v3u_A Glutamate receptor delta-2 subunit; postsynaptic membrane, ionotropic glutamate receptors, transmembrane, membrane protein; 1.74A {Rattus norvegicus} PDB: 2v3t_A
Probab=99.89 E-value=6e-23 Score=214.05 Aligned_cols=231 Identities=23% Similarity=0.371 Sum_probs=183.2
Q ss_pred CCceEEEEecCCCCccceEEeCCC-----cceeeeeHHHHHHHHHhCCCCcceEEee---CCCCCCCCChhHHHHHHhcC
Q 003093 374 NGRHLRIGVPNRVSFREFVSVKGS-----EMTSGFCIDVFTAAINLLPYAVPYKLIP---FGDGHNNPSCTELVRLITAG 445 (848)
Q Consensus 374 ~g~~lrv~v~~~~~~~p~~~~~~~-----~~~~G~~~dll~~i~~~l~~~~~~~~~~---~~~~~~n~s~~~~i~~l~~g 445 (848)
+|++|||++... +||.+.+.+ +++.|+++||++++++++|++++++.++ +|....+.+|.+++.+|.+|
T Consensus 1 ~~~~l~v~~~~~---pP~~~~~~~~~g~~g~~~G~~~dl~~~i~~~lg~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~g 77 (265)
T 2v3u_A 1 GGVVLRVVTVLE---EPFVMVSENVLGKPKKYQGFSIDVLDALSNYLGFNYEIYVAPDHKYGSPQEDGTWNGLVGELVFK 77 (265)
T ss_dssp CCCEEEEEECCB---TTTBEEECCSTTCCCEEESHHHHHHHHHHHHHTCEEEEEECTTCCCCCBCTTSCBCHHHHHHHTT
T ss_pred CCeEEEEEEecc---CCeEEEecCCCCCcceEeEEEHHHHHHHHHHcCCcEEEEEccCCcccccCCCCCcchHHHHHHcC
Confidence 478999999853 677663333 7899999999999999999997776654 23222457899999999999
Q ss_pred eeeEEeeceeeecCceeeeeecccccccceEEEEeccCCCCCcccccccCchhhHHHHHHHHHHHHHHhhhhhcccCCCC
Q 003093 446 VYDAAVGDIAIITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEF 525 (848)
Q Consensus 446 ~~D~~~~~~~~t~~R~~~~dfs~p~~~~~~~~v~~~~~~~~~~~~fl~PF~~~vW~~~~~~~~~~~~v~~~~~~~~~~~~ 525 (848)
++|+++++++++++|.+.++||.||+..+.+++++++.
T Consensus 78 ~~D~~~~~~~~t~~R~~~~~fs~p~~~~~~~~~~~~~~------------------------------------------ 115 (265)
T 2v3u_A 78 RADIGISALTITPDRENVVDFTTRYMDYSVGVLLRRGT------------------------------------------ 115 (265)
T ss_dssp SCSEECSSCBCCHHHHTTEEECSCSEEECEEEEEETTC------------------------------------------
T ss_pred CcCeEEeeeEeehhhhccccccceeeeccEEEEEECCC------------------------------------------
Confidence 99999988999999999999999999999999998654
Q ss_pred CCCCCCCcchhhhhHHHHhhhcCccccccchhHHHHHHHHhhhhhhhccccceeeeeeeeccccCCCCChHHhhcCCCCe
Q 003093 526 RGPPKRQVVTIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPI 605 (848)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~l~~~~~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~s~~~i 605 (848)
++++++||. + ++
T Consensus 116 -----------------------------------------------------------------~i~~~~dL~--~-~v 127 (265)
T 2v3u_A 116 -----------------------------------------------------------------SIQSLQDLS--K-QT 127 (265)
T ss_dssp -----------------------------------------------------------------CCCSHHHHH--T-CS
T ss_pred -----------------------------------------------------------------Cccchhhhh--h-hh
Confidence 588999997 2 35
Q ss_pred eEEe----CchHHHHHHhhhCCCc------------------cCcccCCCHHHHHHHhhcCCCCCceEEEEccHHHHHHH
Q 003093 606 GYQV----NSFARNYLVDELNIDE------------------SRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELF 663 (848)
Q Consensus 606 ~~~~----~s~~~~~l~~~~~~~~------------------~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~ 663 (848)
|+.. ++....++.+. +... .+...+.+.++++++|.. |++ +++.+...+.|+
T Consensus 128 ~v~~g~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~----G~~-a~~~~~~~~~~~ 201 (265)
T 2v3u_A 128 DIPYGTVLDSAVYQHVRMK-GLNPFERDSMYSQMWRMINRSNGSENNVLESQAGIQKVKY----GNY-AFVWDAAVLEYV 201 (265)
T ss_dssp SSCEECBTTSHHHHHHHHH-HTCTTCSCTHHHHHHHHHCC-----CCBSSHHHHHHHHHH----SSC-EEEEEHHHHHHH
T ss_pred cEEEEEeccHHHHHHHHhc-CCCcccccHHHHHHHHHHHhhcCcccccCCHHHHHHHHHc----CCE-EEEEcchHHHHH
Confidence 5444 44455555432 1111 123467899999999999 889 888888888888
Q ss_pred Hhc--CCcEEEeCCccccCCceeeecCCCCchHHHHHHHHhhhccCchHHHHHhhcc-cCCCC
Q 003093 664 LST--RCEFSIVGQVFTKNGWGFAFPRDSPLAVDISTAILKLSENGDLQRIHDKWLL-RSACS 723 (848)
Q Consensus 664 ~~~--~~~l~~~~~~~~~~~~~~~~~k~spl~~~in~~i~~l~e~G~~~~~~~kw~~-~~~c~ 723 (848)
+++ .|++.++++.+...+++++++|++||++.||++|.+|.++|.+++|.+||+. ...|.
T Consensus 202 ~~~~~~~~l~~~~~~~~~~~~~~~~~k~~~l~~~in~~l~~l~~~g~~~~i~~kw~~~~~~c~ 264 (265)
T 2v3u_A 202 AINDPDCSFYTVGNTVADRGYGIALQHGSPYRDVFSQRILELQQSGDMDILKHKWWPKNGQCD 264 (265)
T ss_dssp HHHCTTCCEEEEC---CCEEECCEEETTCTTHHHHHHHHHHHHHHTHHHHHHHHHCCCCCC--
T ss_pred HhcCCCccEEEeccccCCcceEEEEeCCCccHHHHHHHHHHHhhCChHHHHHhhcCCCcCcCC
Confidence 765 3679999888888889999999999999999999999999999999999998 66774
No 47
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=99.89 E-value=4.9e-23 Score=210.23 Aligned_cols=219 Identities=21% Similarity=0.346 Sum_probs=189.5
Q ss_pred CceEEEEecCCCCccceEEeCCCcceeeeeHHHHHHHHHhCCCCcceEEeeCCCCCCCCChhHHHHHHhcCeeeEEeece
Q 003093 375 GRHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDI 454 (848)
Q Consensus 375 g~~lrv~v~~~~~~~p~~~~~~~~~~~G~~~dll~~i~~~l~~~~~~~~~~~~~~~~n~s~~~~i~~l~~g~~D~~~~~~ 454 (848)
.++||||+. +.|+||.+.+.++++.|+++||++++++++|++++++.. +|.+++.+|.+|++|++++++
T Consensus 4 a~~l~v~~~--~~~~P~~~~~~~g~~~G~~~dl~~~i~~~~g~~~~~~~~---------~~~~~~~~l~~g~~D~~~~~~ 72 (232)
T 3i6v_A 4 ADTVRMGTE--GAYPPYNFINDAGEVDGFERELGDELCKRAGLTCEWVKN---------DWDSIIPNLVSGNYDTIIAGM 72 (232)
T ss_dssp --CEEEEEC--SEETTTEEECTTSCEESHHHHHHHHHHHHHTCCEEEEEC---------CGGGHHHHHHTTSCSEECSSC
T ss_pred CCEEEEEEC--CCCCCeeEECCCCCEeeehHHHHHHHHHHcCCceEEEEC---------CHHHHHHHHHCCCCCEEEeCC
Confidence 468999987 378999987778999999999999999999999776654 499999999999999999889
Q ss_pred eeecCceeeeeecccccccceEEEEeccCCCCCcccccccCchhhHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCcc
Q 003093 455 AIITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKRQVV 534 (848)
Q Consensus 455 ~~t~~R~~~~dfs~p~~~~~~~~v~~~~~~~~~~~~fl~PF~~~vW~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 534 (848)
+.+++|.+.++||.||+..+.++++++..
T Consensus 73 ~~t~~r~~~~~fs~p~~~~~~~~~~~~~~--------------------------------------------------- 101 (232)
T 3i6v_A 73 SITDERDEVIDFTQNYIPPTASSYVATSD--------------------------------------------------- 101 (232)
T ss_dssp BCCHHHHTTSEEEEEEECCCEEEEEESST---------------------------------------------------
T ss_pred cCCHHHHhhcCcccccccCCeEEEEECCC---------------------------------------------------
Confidence 99999999999999999999999988543
Q ss_pred hhhhhHHHHhhhcCccccccchhHHHHHHHHhhhhhhhccccceeeeeeeeccccCCCCChHHhhcCCCCeeEEeCchHH
Q 003093 535 TIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVNSFAR 614 (848)
Q Consensus 535 ~~~~~~~~~l~~~~~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~s~~~i~~~~~s~~~ 614 (848)
++||. | +||+..|+...
T Consensus 102 ------------------------------------------------------------~~dL~--g-~igv~~g~~~~ 118 (232)
T 3i6v_A 102 ------------------------------------------------------------GADLS--G-IVAAQTATIQA 118 (232)
T ss_dssp ------------------------------------------------------------TCCTT--S-EEEEETTSHHH
T ss_pred ------------------------------------------------------------hHHhC--C-CEEEecCchHH
Confidence 45665 7 89999999988
Q ss_pred HHHHhhhCCCccCcccCCCHHHHHHHhhcCCCCCceEEEEccHHHHHHHHhcC-CcEEEeCC-ccccCCceeeecCCCC-
Q 003093 615 NYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTR-CEFSIVGQ-VFTKNGWGFAFPRDSP- 691 (848)
Q Consensus 615 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~-~~l~~~~~-~~~~~~~~~~~~k~sp- 691 (848)
.++.+. ..+++.+++.++++++|.+ |++|+++.+...+.+++++. .++.+++. .+...+++++++|++|
T Consensus 119 ~~l~~~----~~~~~~~~~~~~~~~~L~~----GrvDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~ 190 (232)
T 3i6v_A 119 GYIAES----GATLVEFATPEETIAAVRN----GEADAVFADRDYLVPIVAESGGELMFVGDDVPLGGGVGMGLRESDGE 190 (232)
T ss_dssp HHHHHS----SSEEEEESSHHHHHHHHHT----TSSSEEEEEHHHHHHHHHHTTTSSEEEEEEEECSSCEEEEECTTCHH
T ss_pred HHHHhc----CCeEEEeCCHHHHHHHHHc----CCcCEEEEChHHHHHHHHhCCCCeEEecCCCCCCCcEEEEEeCCCHH
Confidence 888653 3677888999999999999 99999999999999998876 67777775 4566789999999988
Q ss_pred chHHHHHHHHhhhccCchHHHHHhhcccCCCCCCC
Q 003093 692 LAVDISTAILKLSENGDLQRIHDKWLLRSACSSQG 726 (848)
Q Consensus 692 l~~~in~~i~~l~e~G~~~~~~~kw~~~~~c~~~~ 726 (848)
+.+.||++|.+|.++|.+++|.+||+....|....
T Consensus 191 l~~~ln~~l~~l~~~G~~~~i~~k~~~~~~~~~~~ 225 (232)
T 3i6v_A 191 LRGKFDAAITSMKEDGTLNTMIKKWFGEDAAVYEE 225 (232)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHHHCTTSCCC--
T ss_pred HHHHHHHHHHHHHHCChHHHHHHHHcCCCCCcccc
Confidence 99999999999999999999999999965555443
No 48
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=99.89 E-value=1.3e-22 Score=209.39 Aligned_cols=221 Identities=20% Similarity=0.401 Sum_probs=196.3
Q ss_pred CCCceEEEEecCCCCccceEEeCCCcceeeeeHHHHHHHHHhCCCCcceEEeeCCCCCCCCChhHHHHHHhcCeeeEEee
Q 003093 373 NNGRHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVG 452 (848)
Q Consensus 373 ~~g~~lrv~v~~~~~~~p~~~~~~~~~~~G~~~dll~~i~~~l~~~~~~~~~~~~~~~~n~s~~~~i~~l~~g~~D~~~~ 452 (848)
...++|+||+. +.|+||.+. .++++.|+++||++.+++++|++++++..+ |.+++.++.+|++|++++
T Consensus 21 ~~~~~l~v~~~--~~~~P~~~~-~~g~~~G~~~dl~~~i~~~~g~~~~~~~~~---------~~~~~~~l~~g~~D~~~~ 88 (249)
T 4f3p_A 21 SMAKELVVGTD--TSFMPFEFK-QGDKYVGFDLDLWAEIAKGAGWTYKIQPMD---------FAGLIPALQTQNIDVALS 88 (249)
T ss_dssp ---CCEEEEEE--SCBTTTBEE-ETTEEESHHHHHHHHHHHHHTCCEEEEEEC---------GGGHHHHHHTTSCSEEEE
T ss_pred ccCceEEEEeC--CCCCCeEEe-cCCeEEEEhHHHHHHHHHHcCCceEEEecC---------HHHHHHHHHCCCCCEEEe
Confidence 35678999997 368888875 678899999999999999999997777754 999999999999999988
Q ss_pred ceeeecCceeeeeecccccccceEEEEeccCCCCCcccccccCchhhHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCC
Q 003093 453 DIAIITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKRQ 532 (848)
Q Consensus 453 ~~~~t~~R~~~~dfs~p~~~~~~~~v~~~~~~~~~~~~fl~PF~~~vW~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 532 (848)
++..+++|.+.++||.||+....++++++..
T Consensus 89 ~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~------------------------------------------------- 119 (249)
T 4f3p_A 89 GMTIKEERRKAIDFSDPYYDSGLAAMVQANN------------------------------------------------- 119 (249)
T ss_dssp EEECCHHHHTTEEECSCCEEEEEEEEEETTC-------------------------------------------------
T ss_pred ccccCHHHHcCcceecceeeccEEEEEECCC-------------------------------------------------
Confidence 8999999999999999999999999998776
Q ss_pred cchhhhhHHHHhhhcCccccccchhHHHHHHHHhhhhhhhccccceeeeeeeeccccCCCCChHHhhcCCCCeeEEeCch
Q 003093 533 VVTIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVNSF 612 (848)
Q Consensus 533 ~~~~~~~~~~~l~~~~~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~s~~~i~~~~~s~ 612 (848)
+.+++++||. +++||+..|+.
T Consensus 120 ---------------------------------------------------------~~i~~~~dL~--g~~i~v~~g~~ 140 (249)
T 4f3p_A 120 ---------------------------------------------------------TTIKSIDDLN--GKVIAAKTGTA 140 (249)
T ss_dssp ---------------------------------------------------------CSCCSSGGGT--TSEEEEETTSH
T ss_pred ---------------------------------------------------------CCcCChHHhC--CCEEEEeCCCh
Confidence 5789999998 88999999998
Q ss_pred HHHHHHhhhCCCccCcccCCCHHHHHHHhhcCCCCCceEEEEccHHHHHHHHhcCC--cEEEeCCccccCCceeeecCCC
Q 003093 613 ARNYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRC--EFSIVGQVFTKNGWGFAFPRDS 690 (848)
Q Consensus 613 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~k~s 690 (848)
...++.+. .+..+++.+++.++.+++|.+ |++|+++.+...+.+++++.. ++.+++..+...+++++++|+.
T Consensus 141 ~~~~l~~~--~~~~~~~~~~~~~~~~~~L~~----GrvDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~~ 214 (249)
T 4f3p_A 141 TIDWIKAH--LKPKEIRQFPNIDQAYLALEA----GRVDAAMHDTPNVLFFVNNEGKGRVKVAGAPVSGDKYGIGFPKGS 214 (249)
T ss_dssp HHHHHHHH--CCCSEEEEESSHHHHHHHHHT----TSSSEEEEEHHHHHHHHHTTTTTTEEEEEEEEEEEEEEEEEETTC
T ss_pred HHHHHHhc--CCCceEEEcCCHHHHHHHHHc----CCeeEEEeCcHHHHHHHHhCCCCceEEecCCCCCccEEEEEcCCc
Confidence 88888653 345678888999999999999 999999999999999998864 4888888888889999999999
Q ss_pred CchHHHHHHHHhhhccCchHHHHHhhccc
Q 003093 691 PLAVDISTAILKLSENGDLQRIHDKWLLR 719 (848)
Q Consensus 691 pl~~~in~~i~~l~e~G~~~~~~~kw~~~ 719 (848)
|+.+.||++|.++.++|.+++|.+||+..
T Consensus 215 ~l~~~l~~~l~~l~~~g~~~~i~~k~~~~ 243 (249)
T 4f3p_A 215 PLVAKVNAELARMKADGRYAKIYKKWFGS 243 (249)
T ss_dssp THHHHHHHHHHHHHHHTHHHHHHHHHHSS
T ss_pred hHHHHHHHHHHHHHhCCcHHHHHHHHcCC
Confidence 99999999999999999999999999983
No 49
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0
Probab=99.88 E-value=1.9e-22 Score=207.70 Aligned_cols=224 Identities=14% Similarity=0.261 Sum_probs=198.1
Q ss_pred CceEEEEecCCCCccceEEeCCCcceeeeeHHHHHHHHHhCCCCcceEEeeCCCCCCCCChhHHHHHHhcCeeeEEeece
Q 003093 375 GRHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDI 454 (848)
Q Consensus 375 g~~lrv~v~~~~~~~p~~~~~~~~~~~G~~~dll~~i~~~l~~~~~~~~~~~~~~~~n~s~~~~i~~l~~g~~D~~~~~~ 454 (848)
.++||||+. ++++||.+.+.++++.|+++||++++++++|++++++.. +|.+++.+|.+|++|++++++
T Consensus 4 ~~~l~v~~~--~~~~P~~~~~~~g~~~G~~~dl~~~i~~~~g~~~~~~~~---------~~~~~~~~l~~g~~D~~~~~~ 72 (245)
T 3k4u_A 4 RGELRVGLE--PGYLPFEMKDKKGNVIGFDVDLAREMAKAMGVKLKLVPT---------SWDGLIPGLVTEKFDIIISGM 72 (245)
T ss_dssp CSEEEEEEC--TTSTTTCEEETTTEEESHHHHHHHHHHHHHTCEEEEEEC---------CGGGHHHHHHTTSCSEECSSC
T ss_pred CCeEEEEEC--CCcCCeeEECCCCCCccchHHHHHHHHHHhCCeEEEEEc---------cHHHHHHHHhCCCcCEEEecC
Confidence 468999998 478898886678899999999999999999999766654 399999999999999998889
Q ss_pred eeecCceeeeeecccccccceEEEEeccCCCCCcccccccCchhhHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCcc
Q 003093 455 AIITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKRQVV 534 (848)
Q Consensus 455 ~~t~~R~~~~dfs~p~~~~~~~~v~~~~~~~~~~~~fl~PF~~~vW~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 534 (848)
..+++|.+.+.||.||+..+.++++++..
T Consensus 73 ~~t~~r~~~~~~s~p~~~~~~~~~~~~~~--------------------------------------------------- 101 (245)
T 3k4u_A 73 TISQERNLRVNFVEPYIVVGQSLLVKKGL--------------------------------------------------- 101 (245)
T ss_dssp BCCHHHHTTSEECSCSEEECEEEEEETTT---------------------------------------------------
T ss_pred cCCHHHHhhcCcchhhheeceEEEEECCc---------------------------------------------------
Confidence 99999999999999999999999998774
Q ss_pred hhhhhHHHHhhhcCccccccchhHHHHHHHHhhhhhhhccccceeeeeeeeccccCCCCChHHhhcCCCCeeEEeCchHH
Q 003093 535 TIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVNSFAR 614 (848)
Q Consensus 535 ~~~~~~~~~l~~~~~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~s~~~i~~~~~s~~~ 614 (848)
...+++++||...+++||+..|+...
T Consensus 102 ------------------------------------------------------~~~i~~~~dL~~~g~~i~v~~g~~~~ 127 (245)
T 3k4u_A 102 ------------------------------------------------------EKGVKSYKDLDKPELTLVTKFGVSAE 127 (245)
T ss_dssp ------------------------------------------------------TTTCCSGGGGCCSSCEEEEETTSHHH
T ss_pred ------------------------------------------------------ccccCCHHHhccCCcEEEEeCCcHHH
Confidence 14788999998768889999999988
Q ss_pred HHHHhhhCCCccCcccCCCHHHHHHHhhcCCCCCceEEEEccHHHHHHHHhcC--CcEEEeCCccccCCceeeecCCCC-
Q 003093 615 NYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTR--CEFSIVGQVFTKNGWGFAFPRDSP- 691 (848)
Q Consensus 615 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~~~k~sp- 691 (848)
.++.+. .+..+++.+++.++++++|.+ |++|+++.+...+.+++++. ..+..++..+...+++++++|++|
T Consensus 128 ~~l~~~--~~~~~~~~~~~~~~~~~~L~~----GrvDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~ 201 (245)
T 3k4u_A 128 YAAKRL--FKNAKLKTYDTEAEAVQEVLN----GKADMFIFDLPFNVAFMAQKGQGYLVHLDTSLTYEPLGWAIKKGDPD 201 (245)
T ss_dssp HHHHHH--CSSSEEEEESSHHHHHHHHHS----SSSEEEEEEHHHHHHHHHHTTTTTEEEECCCCSCEEECCEECTTCHH
T ss_pred HHHHhh--CCcCCEEEeCCHHHHHHHHHc----CCCcEEEEcHHHHHHHHhcCCccceeecCCCcccccEEEEEcCCCHH
Confidence 888553 345678889999999999999 99999999999998887764 368888888888899999999999
Q ss_pred chHHHHHHHHhhhccCchHHHHHhhcccC
Q 003093 692 LAVDISTAILKLSENGDLQRIHDKWLLRS 720 (848)
Q Consensus 692 l~~~in~~i~~l~e~G~~~~~~~kw~~~~ 720 (848)
+++.||++|.+|.++|.+++|.+||+...
T Consensus 202 l~~~ln~~l~~l~~~g~~~~i~~k~~~~~ 230 (245)
T 3k4u_A 202 FLNWLNHFLAQIKHDGSYDELYERWFVDT 230 (245)
T ss_dssp HHHHHHHHHHHHHHHSHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHhcCcc
Confidence 99999999999999999999999999843
No 50
>3ckm_A YRAM (HI1655), LPOA; periplasmic-binding protein, lipoprotein, unliganded, biosynthetic protein; 1.35A {Haemophilus influenzae} SCOP: c.93.1.1
Probab=99.88 E-value=9e-23 Score=219.64 Aligned_cols=261 Identities=11% Similarity=0.025 Sum_probs=201.4
Q ss_pred CCCeEEEEccCCchhHHHHHHhhc-cCCccEEecccCCCCCCCCCCCceEeccCChHHHHHHHHHHHHHcCcEEEEEEEE
Q 003093 2 EGQTVAIIGPQDAVTSHVVSHVAN-ELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYV 80 (848)
Q Consensus 2 ~~~V~aiIGp~~S~~~~ava~i~~-~~~vP~Is~~at~p~ls~~~~p~f~r~~p~d~~q~~ai~~~~~~~~w~~vaii~~ 80 (848)
+++|++||||.+|+.+.++++... ...+|+++.+++++ .. ..|++||+.+++..++.++++++...|++++++++.
T Consensus 56 ~~~v~~iiGp~~s~~~~a~~~~~~~~~~v~~~~~~~~~~-~~--~~~~~f~~~~~~~~~~~~~a~~~~~~g~k~~~ii~~ 132 (327)
T 3ckm_A 56 QAGIKTLVGPLLKQNLDVILADPAQIQGMDVLALNATPN-SR--AIPQLCYYGLSPEDEAESAANKMWNDGVRNPLVAMP 132 (327)
T ss_dssp HTTCCEEECCCSHHHHHHHHHCGGGGTTCEEEESCCCTT-CC--CCTTEEECCCCHHHHHHHHHHHHHHTTCCSCEEEEE
T ss_pred HcCCeEEEEccccccchhhHHHHHhccCceEeccCcCcc-cc--cCCCeEEEecChHHHHHHHHHHHHhcCCeeEEEEec
Confidence 478999999999998888776554 55566665444332 22 358999999999999999999998899999999999
Q ss_pred cCCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccCCcHHHHHHHHHHcCCCCCCeE
Q 003093 81 DDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYV 160 (848)
Q Consensus 81 dd~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~~ 160 (848)
|++||+...+.|.+.+++.|++|+..+.++.. +....+.+++..++|+|++.+.+.++..++++++++|+.. .
T Consensus 133 ~~~yg~~~~~~f~~~~~~~Gg~vv~~~~~~~~----~~~~~~~~~~~~~~dai~~~~~~~~~~~i~~q~~~~g~~~---~ 205 (327)
T 3ckm_A 133 QNDLGQRVGNAFNVRWQQLAGTDANIRYYNLP----ADVTYFVQENNSNTTALYAVASPTELAEMKGYLTNIVPNL---A 205 (327)
T ss_dssp SSHHHHHHHHHHHHHHHHHHSSCCEEEEESST----THHHHHHHHSCTTCCEEEECCCHHHHHHHHHHHTTTCTTC---E
T ss_pred CChHHHHHHHHHHHHHHHCCCeEEEEEECCCC----chhhHHHHHhccCCcEEEEEcCHHHHHHHHHHHHhhhccC---C
Confidence 99999999999999999999999998888654 2345677888999999999999999999999999998743 4
Q ss_pred EEecCccccccCCCCCCCcccccccceeEEEEE-e--cCCchhHHHHHHHHHhhccCCCCCCCCCCCcchhhhhhHHHHH
Q 003093 161 WIATSWLSTALDTNSPFPSDVMDDIQGVLTLRT-Y--TPDSVLKRKFISRWRNLTDAKTPNGYIGLNAYGFYAYDTVWLL 237 (848)
Q Consensus 161 wi~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~-~--~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~YDAv~~~ 237 (848)
++.++++........ ......++|++.... + .++.+..++|.++|++.++ +..+.+++|||+.++
T Consensus 206 ~~~~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~~---------~~~~~AlgyDA~~l~ 273 (327)
T 3ckm_A 206 IYASSRASASATNTN---TDFIAQMNGVQFSDIPFFKDTNSPQYQKLAKSTGGEYQ---------LMRLYAMGADAWLLI 273 (327)
T ss_dssp EEECGGGCCHHHHTC---HHHHHHTTTCEEEECGGGGCCCSHHHHHHHHHTTTCHH---------HHHHHHHHHHHHHHH
T ss_pred EEeeeccccccchhc---chhhhhcCCeEEEcccccCCCCCHHHHHHHHHHHhhcC---------CCchHHHHHHHHHHH
Confidence 666665443221110 222234677766654 2 4556888999999988775 223677899999887
Q ss_pred HHHHHHHHhcCCCccccCCCccccccCccccCcccccCChHHHHHHHHhccccccccceEeccCCCCCCCcEEEEEeecc
Q 003093 238 ARAINSFFKQGGNLSFSKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQANMTGTAGPARFNSHGDLINPAYEIINVIGT 317 (848)
Q Consensus 238 a~Al~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~v~Fd~~g~~~~~~~~I~~~~~~ 317 (848)
+++.+.. .+...+|+|+||.++||++|+ +...+.+.++++|
T Consensus 274 ~~l~~~~--------------------------------------~~~~~~f~G~tG~i~fd~~G~-~~r~l~~~~~~~G 314 (327)
T 3ckm_A 274 NQFNELR--------------------------------------QVPGYRLSGLTGILSADTNCN-VERDMTWYQYQDG 314 (327)
T ss_dssp HTHHHHH--------------------------------------HSTTCCEEETTEEEEECTTCB-EEEECEEEEEETT
T ss_pred HHHHHhc--------------------------------------CCCCCCceeceEEEEECCCCC-CccccEEEEEECC
Confidence 6654431 122346999999999999998 4677889999999
Q ss_pred cEEEEE
Q 003093 318 GYRRIG 323 (848)
Q Consensus 318 ~~~~Vg 323 (848)
+++.|.
T Consensus 315 ~~vpv~ 320 (327)
T 3ckm_A 315 AIVPVV 320 (327)
T ss_dssp EEEECC
T ss_pred EEEEcc
Confidence 998875
No 51
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=99.88 E-value=3.1e-22 Score=205.55 Aligned_cols=222 Identities=19% Similarity=0.278 Sum_probs=196.0
Q ss_pred CceEEEEecCCCCccceEEeCCCcceeeeeHHHHHHHHHhCCCCcceEEeeCCCCCCCCChhHHHHHHhcCeeeEEeece
Q 003093 375 GRHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDI 454 (848)
Q Consensus 375 g~~lrv~v~~~~~~~p~~~~~~~~~~~G~~~dll~~i~~~l~~~~~~~~~~~~~~~~n~s~~~~i~~l~~g~~D~~~~~~ 454 (848)
.++|+||+. +.++||.+.+.++++.|+++||++.+++++|++++++.. +|.+++.+|.+|++|++++++
T Consensus 10 ~~~l~v~~~--~~~~P~~~~~~~g~~~G~~~dl~~~i~~~~g~~~~~~~~---------~~~~~~~~l~~g~~D~~~~~~ 78 (242)
T 3del_B 10 SEKFIVGTN--ATYPPFEFVDKRGEVVGFDIDLAREISNKLGKTLDVREF---------SFDALILNLKQHRIDAVITGM 78 (242)
T ss_dssp -CEEEEEEC--SCBTTTBEECTTSCEESHHHHHHHHHHHHHTCEEEEEEC---------CGGGHHHHHHTTSSSEECSSB
T ss_pred CCcEEEEeC--CCCCCeeEECCCCCEEEeeHHHHHHHHHHcCCceEEEEc---------CHHHHHHHHhCCCcCEEEecC
Confidence 468999995 478999886678999999999999999999988666554 499999999999999999889
Q ss_pred eeecCceeeeeeccccc--ccceEEEEeccCCCCCcccccccCchhhHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCC
Q 003093 455 AIITNRTKMADFTQPYI--ESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKRQ 532 (848)
Q Consensus 455 ~~t~~R~~~~dfs~p~~--~~~~~~v~~~~~~~~~~~~fl~PF~~~vW~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 532 (848)
..+++|.+.++| .||+ ..+.++++++..
T Consensus 79 ~~~~~r~~~~~~-~p~~~~~~~~~~~~~~~~------------------------------------------------- 108 (242)
T 3del_B 79 SITPSRLKEILM-IPYYGEEIKHLVLVFKGE------------------------------------------------- 108 (242)
T ss_dssp BCCHHHHTTEEE-EEEEEEEESEEEEEEESC-------------------------------------------------
T ss_pred cCCHHHHhcccc-eeeeecCCceEEEEeCCC-------------------------------------------------
Confidence 999999999999 9999 889999988653
Q ss_pred cchhhhhHHHHhhhcCccccccchhHHHHHHHHhhhhhhhccccceeeeeeeeccccCCCCChHHhhcCCCCeeEEeCch
Q 003093 533 VVTIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVNSF 612 (848)
Q Consensus 533 ~~~~~~~~~~~l~~~~~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~s~~~i~~~~~s~ 612 (848)
++++++||. |++||+..|+.
T Consensus 109 ----------------------------------------------------------~i~~~~dL~--g~~i~v~~g~~ 128 (242)
T 3del_B 109 ----------------------------------------------------------NKHPLPLTQ--YRSVAVQTGTY 128 (242)
T ss_dssp ----------------------------------------------------------CSCCCCGGG--SSCEEEETTSH
T ss_pred ----------------------------------------------------------CCCCHHHhC--CCEEEEEcCcH
Confidence 678899998 89999999999
Q ss_pred HHHHHHhhhCCCccCcccCCCHHHHHHHhhcCCCCCceEEEEccHHHHHHHHhcCCcEEEeCCccccCC----ceeeecC
Q 003093 613 ARNYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRCEFSIVGQVFTKNG----WGFAFPR 688 (848)
Q Consensus 613 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~k 688 (848)
...++.+ .+..+++.+.+.++++++|.+ |++|+++.+...+.+++++...+.+++..+.... ++++++|
T Consensus 129 ~~~~l~~---~~~~~~~~~~~~~~~~~~L~~----g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 201 (242)
T 3del_B 129 QEAYLQS---LSEVHIRSFDSTLEVLMEVMH----GKSPVAVLEPSIAQVVLKDFPALSTATIDLPEDQWVLGYGIGVAS 201 (242)
T ss_dssp HHHHHHH---STTCCEEEESSHHHHHHHHHT----TSSSEEEECHHHHHHHGGGCTTEEEEEEECCGGGCEEEEEEEEET
T ss_pred HHHHHHh---CCCceEEEECCHHHHHHHHHc----CCCCEEEecHHHHHHHHHhCCCeEEecCccCcccccceEEEEEeC
Confidence 8888855 455778889999999999999 9999999999999999998877888877777777 9999999
Q ss_pred CCC-chHHHHHHHHhhhccCchHHHHHhhcccCCCCC
Q 003093 689 DSP-LAVDISTAILKLSENGDLQRIHDKWLLRSACSS 724 (848)
Q Consensus 689 ~sp-l~~~in~~i~~l~e~G~~~~~~~kw~~~~~c~~ 724 (848)
++| +++.||++|.+|.++|.+++|.+||+....|..
T Consensus 202 ~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~~~~~~~ 238 (242)
T 3del_B 202 DRPALALKIEAAVQEIRKEGVLAELEQKWGLNNLEHH 238 (242)
T ss_dssp TCHHHHHHHHHHHHHHHHTTHHHHHHHHTTGGGCSST
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHCCCCCccc
Confidence 988 999999999999999999999999998554443
No 52
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=99.88 E-value=4.9e-22 Score=207.62 Aligned_cols=224 Identities=19% Similarity=0.333 Sum_probs=196.1
Q ss_pred CceEEEEecCCCCccceEEeCCCcceeeeeHHHHHHHHHhCCCCcceEEeeCCCCCCCCChhHHHHHHhcCeeeEEeece
Q 003093 375 GRHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDI 454 (848)
Q Consensus 375 g~~lrv~v~~~~~~~p~~~~~~~~~~~G~~~dll~~i~~~l~~~~~~~~~~~~~~~~n~s~~~~i~~l~~g~~D~~~~~~ 454 (848)
.++||||+.. .|+||.+.+.++++.|+++||++.+++++|++++++.. +|.+++.+|.+|++|++++++
T Consensus 20 ~~~l~v~~~~--~~~P~~~~~~~g~~~G~~~dl~~~i~~~~g~~~~~~~~---------~~~~~~~~l~~g~~D~~~~~~ 88 (268)
T 3hv1_A 20 EKKIKIGFDA--TFVPMGYEEKDGSYIGFDIDLANAVFKLYGIDVEWQAI---------DWDMKETELKNGTIDLIWNGY 88 (268)
T ss_dssp HTEEEEEECT--EETTTEEECTTSCEECHHHHHHHHHHHTTTCEEEEEEC---------CGGGHHHHHHHTSCSEECSSC
T ss_pred CCcEEEEECC--CCCCceEECCCCCEEEehHHHHHHHHHHhCCcEEEEEC---------CHHHHHHHHHCCCCCEEEecC
Confidence 4689999974 78999886778999999999999999999998666654 399999999999999999889
Q ss_pred eeecCceeeeeecccccccceEEEEeccCCCCCcccccccCchhhHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCcc
Q 003093 455 AIITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKRQVV 534 (848)
Q Consensus 455 ~~t~~R~~~~dfs~p~~~~~~~~v~~~~~~~~~~~~fl~PF~~~vW~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 534 (848)
..+++|.+.+.||.||+..+.++++++..
T Consensus 89 ~~t~~r~~~~~fs~p~~~~~~~~~~~~~~--------------------------------------------------- 117 (268)
T 3hv1_A 89 SVTDERKQSADFTEPYMVNEQVLVTKKSS--------------------------------------------------- 117 (268)
T ss_dssp BCCHHHHTTCEECCCCEEECEEEEEEGGG---------------------------------------------------
T ss_pred ccCHHHHhcCcCcHHHeeCceEEEEECCC---------------------------------------------------
Confidence 99999999999999999999999998654
Q ss_pred hhhhhHHHHhhhcCccccccchhHHHHHHHHhhhhhhhccccceeeeeeeeccccCCCCChHHhhcCCCCeeEEeCchHH
Q 003093 535 TIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVNSFAR 614 (848)
Q Consensus 535 ~~~~~~~~~l~~~~~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~s~~~i~~~~~s~~~ 614 (848)
.+++++||. |++||+..|+...
T Consensus 118 --------------------------------------------------------~i~~~~dL~--g~~i~v~~g~~~~ 139 (268)
T 3hv1_A 118 --------------------------------------------------------GIDSVAGMA--GKTLGAQAGSSGY 139 (268)
T ss_dssp --------------------------------------------------------CCCSSGGGT--TCCEEEETTCHHH
T ss_pred --------------------------------------------------------CCCCHHHhC--CCEEEEEeCCchH
Confidence 678899997 9999999999888
Q ss_pred HHHHhhhC-----CCccCcccCCCHHHHHHHhhcCCCCCceEEEEccHHHHHHHHhcC---CcEEEeCCccccCCceeee
Q 003093 615 NYLVDELN-----IDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTR---CEFSIVGQVFTKNGWGFAF 686 (848)
Q Consensus 615 ~~l~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~~~~~ 686 (848)
.++.+... .+..+++.+.+.++++++|.+ |++|+++.+...+.+++++. +++.+++..+...++++++
T Consensus 140 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~----GrvDa~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 215 (268)
T 3hv1_A 140 DAFNASPKILKDVVANQKVVQYSTFTQALIDLNS----GRIDGLLIDRVYANYYLEKSGVLDQYNVMPAGYEGESFAVGA 215 (268)
T ss_dssp HHHHHCTTTTTTTSGGGCEEEESSHHHHHHHHHH----TSCSEEEEEHHHHHHHHHHTTCGGGEEEEECSSCCEEECCEE
T ss_pred HHHHHhhHHHhhhcccceEEEeCCHHHHHHHHHc----CCCCEEEeCHHHHHHHHHhCCCCCceEECCCCCCCCcEEEEE
Confidence 88754221 223567788999999999999 99999999999999988875 4588888878888899999
Q ss_pred cCCCC-chHHHHHHHHhhhccCchHHHHHhhcccCCC
Q 003093 687 PRDSP-LAVDISTAILKLSENGDLQRIHDKWLLRSAC 722 (848)
Q Consensus 687 ~k~sp-l~~~in~~i~~l~e~G~~~~~~~kw~~~~~c 722 (848)
+|++| +.+.||++|.+|.++|.+++|.+||+....+
T Consensus 216 ~k~~~~l~~~ln~~l~~l~~~g~~~~i~~k~~~~~~~ 252 (268)
T 3hv1_A 216 RKVDKTLIKKINQGFETLYKNGEFQKISNKWFGEDVA 252 (268)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTHHHHHHHHHHSSCCC
T ss_pred cCCCHHHHHHHHHHHHHHHhCCHHHHHHHHhcCCCCC
Confidence 99998 9999999999999999999999999984433
No 53
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=99.88 E-value=2.3e-22 Score=206.02 Aligned_cols=221 Identities=16% Similarity=0.232 Sum_probs=193.2
Q ss_pred CceEEEEecCCCCccceEEeCCCcceeeeeHHHHHHHHHhCCCCcceEEeeCCCCCCCCChhHHHHHHhcCeeeEEeece
Q 003093 375 GRHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDI 454 (848)
Q Consensus 375 g~~lrv~v~~~~~~~p~~~~~~~~~~~G~~~dll~~i~~~l~~~~~~~~~~~~~~~~n~s~~~~i~~l~~g~~D~~~~~~ 454 (848)
.++||||+. ++|+||.+.+.++++.|+++||++++++++|++++++.. +|.+++.+|.+|++|++++++
T Consensus 14 ~~~l~v~~~--~~~~P~~~~~~~g~~~G~~~dl~~~i~~~~g~~~~~~~~---------~~~~~~~~l~~g~~D~~~~~~ 82 (239)
T 3kbr_A 14 SGVLRVATT--GDYKPFSYRTEEGGYAGFDVDMAQRLAESLGAKLVVVPT---------SWPNLMRDFADDRFDIAMSGI 82 (239)
T ss_dssp HTEEEEEEC--SEETTTEEECTTSCEESHHHHHHHHHHHHTTCEEEEEEC---------CTTTHHHHHHTTCCSEECSSC
T ss_pred CCeEEEEEC--CCCCCeeEECCCCCEEeehHHHHHHHHHHHCCceEEEEe---------CHHHHHHHHHCCCcCEEEeCC
Confidence 468999996 378999886678999999999999999999999766654 499999999999999998889
Q ss_pred eeecCceeeeeecccccccceEEEEeccCCCCCcccccccCchhhHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCcc
Q 003093 455 AIITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKRQVV 534 (848)
Q Consensus 455 ~~t~~R~~~~dfs~p~~~~~~~~v~~~~~~~~~~~~fl~PF~~~vW~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 534 (848)
..+++|.+.++||.||+..+.++++++..
T Consensus 83 ~~t~~r~~~~~fs~p~~~~~~~~~~~~~~--------------------------------------------------- 111 (239)
T 3kbr_A 83 SINLERQRQAYFSIPYLRDGKTPITLCSE--------------------------------------------------- 111 (239)
T ss_dssp BCCHHHHTTCEECSCSEEECEEEEEEGGG---------------------------------------------------
T ss_pred cCCHHHcCccccchHHhccCcEEEEECCc---------------------------------------------------
Confidence 99999999999999999999999998765
Q ss_pred hhhhhHHHHhhhcCccccccchhHHHHHHHHhhhhhhhccccceeeeeeeeccccCCCCChHHhhcCCCCeeEEeCchHH
Q 003093 535 TIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVNSFAR 614 (848)
Q Consensus 535 ~~~~~~~~~l~~~~~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~s~~~i~~~~~s~~~ 614 (848)
...+++++||...+++||+..|+...
T Consensus 112 ------------------------------------------------------~~~i~~~~dL~~~g~~v~~~~g~~~~ 137 (239)
T 3kbr_A 112 ------------------------------------------------------EARFQTLEQIDQPGVTAIVNPGGTNE 137 (239)
T ss_dssp ------------------------------------------------------GGGGSSHHHHSSTTCEEEECTTSHHH
T ss_pred ------------------------------------------------------ccccCCHHHhcCCCcEEEEcCCCcHH
Confidence 13688999998667789999999988
Q ss_pred HHHHhhhCCCccCcccCCCHHHHHHHhhcCCCCCceEEEEccHHHHHHHHhcCCcEEEeC--CccccCCceeeecCCCC-
Q 003093 615 NYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRCEFSIVG--QVFTKNGWGFAFPRDSP- 691 (848)
Q Consensus 615 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~k~sp- 691 (848)
.++.+. .+..+++.+++.++++++|.+ |++|+++.+...+.+++++..++.++. ..+...+++++++| .+
T Consensus 138 ~~l~~~--~~~~~~~~~~~~~~~~~~l~~----grvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k-~~~ 210 (239)
T 3kbr_A 138 KFARAN--LKKARILVHPDNVTIFQQIVD----GKADLMMTDAIEARLQSRLHPELCAVHPQQPFDFAEKAYLLPR-DEA 210 (239)
T ss_dssp HHHHHH--CSSSEEEECCCTTTHHHHHHT----TSCSEEEEEHHHHHHHHHHCTTEEECCCC-CCCCEEECCEECS-CHH
T ss_pred HHHHHh--CCCCceEEeCCHHHHHHHHHc----CCcCEEEEchHHHHHHHHhCCCcEEecCCCCccccceEEEEcC-CHH
Confidence 888553 345678889999999999999 999999999999999999877777665 34667789999999 65
Q ss_pred chHHHHHHHHhhhccCchHHHHHhhcc
Q 003093 692 LAVDISTAILKLSENGDLQRIHDKWLL 718 (848)
Q Consensus 692 l~~~in~~i~~l~e~G~~~~~~~kw~~ 718 (848)
+.+.||++|.+|.++|.+++|.+||+.
T Consensus 211 l~~~ln~~l~~l~~~g~~~~i~~k~~~ 237 (239)
T 3kbr_A 211 FKRYVDQWLHIAEQSGLLRQRMEHWLE 237 (239)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHCCcHHHHHHHHhc
Confidence 999999999999999999999999986
No 54
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=99.87 E-value=9.3e-22 Score=199.52 Aligned_cols=218 Identities=22% Similarity=0.352 Sum_probs=186.8
Q ss_pred ceEEEEecCCCCccceEEeCCCcceeeeeHHHHHHHHHhCCCCcceEEeeCCCCCCCCChhHHHHHHhcCeeeEEeecee
Q 003093 376 RHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDIA 455 (848)
Q Consensus 376 ~~lrv~v~~~~~~~p~~~~~~~~~~~G~~~dll~~i~~~l~~~~~~~~~~~~~~~~n~s~~~~i~~l~~g~~D~~~~~~~ 455 (848)
++||||+.. .|+||.+.+.++++.|+++|+++++++++|++++++.. +|.+++.++.+|++|++++++.
T Consensus 2 ~~l~v~~~~--~~~P~~~~~~~g~~~G~~~dl~~~i~~~~g~~~~~~~~---------~~~~~~~~l~~g~~D~~~~~~~ 70 (227)
T 3tql_A 2 DTIKFATEA--TYPPYVYMGPSGQVEGFGADIVKAVCKQMQAVCTISNQ---------PWDSLIPSLKLGKFDALFGGMN 70 (227)
T ss_dssp CEEEEEECS--CBTTTBEEC--CCEESHHHHHHHHHHHHTTCEEEEEEC---------CHHHHHHHHHHTSCSEECSSCB
T ss_pred ceEEEEEcC--CCCCeeEECCCCCcccchHHHHHHHHHHhCCeEEEEeC---------CHHHHHHHHhCCCCCEEEecCc
Confidence 579999974 68999886778899999999999999999999776654 4999999999999999988899
Q ss_pred eecCceeeeeecccccccceEEEEeccCCCCCcccccccCchhhHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCcch
Q 003093 456 IITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKRQVVT 535 (848)
Q Consensus 456 ~t~~R~~~~dfs~p~~~~~~~~v~~~~~~~~~~~~fl~PF~~~vW~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 535 (848)
.+++|.+.+.||.||+..+.++++++..
T Consensus 71 ~~~~r~~~~~~s~p~~~~~~~l~~~~~~---------------------------------------------------- 98 (227)
T 3tql_A 71 ITTARQKEVDFTDPYYTNSVSFIADKNT---------------------------------------------------- 98 (227)
T ss_dssp CCTTGGGTEEECSCSBCCEEEEEEETTS----------------------------------------------------
T ss_pred CCHhHHhheecccceeccceEEEEeCCC----------------------------------------------------
Confidence 9999999999999999999999998776
Q ss_pred hhhhHHHHhhhcCccccccchhHHHHHHHHhhhhhhhccccceeeeeeeeccccCCCCChHHhhcCCCCeeEEeCchHHH
Q 003093 536 IFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVNSFARN 615 (848)
Q Consensus 536 ~~~~~~~~l~~~~~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~s~~~i~~~~~s~~~~ 615 (848)
+.+++++||. |++||+..|+....
T Consensus 99 ------------------------------------------------------~~~~~~~dL~--g~~v~~~~g~~~~~ 122 (227)
T 3tql_A 99 ------------------------------------------------------PLTLSKQGLK--GKIIGVQGGTTFDS 122 (227)
T ss_dssp ------------------------------------------------------CCCCSTTTTT--TCEEEEETTSHHHH
T ss_pred ------------------------------------------------------CCCCCHHHhC--CCEEEEEecccHHH
Confidence 3347899997 89999999998888
Q ss_pred HHHhhhCCCccCcccCCCHHHHHHHhhcCCCCCceEEEEccHHHHHHHHhcCCc--EEEeCCccc-----cCCceeeecC
Q 003093 616 YLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRCE--FSIVGQVFT-----KNGWGFAFPR 688 (848)
Q Consensus 616 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~--l~~~~~~~~-----~~~~~~~~~k 688 (848)
++.+..... .+++.+.+.++++++|.+ |++|+++.+...+.+++++... +.+++..+. ..+++++++|
T Consensus 123 ~l~~~~~~~-~~~~~~~~~~~~~~~l~~----grvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (227)
T 3tql_A 123 YLQDSFGNS-ITIQRYPSEEDALMDLTS----GRVDAVVGDTPLIKQWLKQNGRREYVLIGKPVNDPNYFGKGVGIAVKK 197 (227)
T ss_dssp HHHHHHGGG-SEEEEESSHHHHHHHHTT----TSSSEEESCHHHHHHHHHHTTCCSEEEEEEECCCGGGCCSCBCCEEET
T ss_pred HHHHhcccc-ceEEEcCCHHHHHHHHHc----CCcCEEEeChHHHHHHHHhCCCCCEEEecCcccCccccccceEEEEcC
Confidence 886543211 577788999999999999 9999999999999998887653 777654433 3356999999
Q ss_pred CCC-chHHHHHHHHhhhccCchHHHHHhhc
Q 003093 689 DSP-LAVDISTAILKLSENGDLQRIHDKWL 717 (848)
Q Consensus 689 ~sp-l~~~in~~i~~l~e~G~~~~~~~kw~ 717 (848)
++| +.+.||++|.++.++|.+++|.+||+
T Consensus 198 ~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~ 227 (227)
T 3tql_A 198 GNQALLLKLNKALAAIKANGVYAAIVQKYF 227 (227)
T ss_dssp TCHHHHHHHHHHHHHHHHTSHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHhCChHHHHHHhhC
Confidence 998 99999999999999999999999996
No 55
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=99.87 E-value=1.4e-21 Score=199.08 Aligned_cols=218 Identities=20% Similarity=0.310 Sum_probs=189.3
Q ss_pred CceEEEEecCCCCccceEEe--CCCcceeeeeHHHHHHHHHhCCCCcceEEeeCCCCCCCCChhHHHHHHhcCeeeEEee
Q 003093 375 GRHLRIGVPNRVSFREFVSV--KGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVG 452 (848)
Q Consensus 375 g~~lrv~v~~~~~~~p~~~~--~~~~~~~G~~~dll~~i~~~l~~~~~~~~~~~~~~~~n~s~~~~i~~l~~g~~D~~~~ 452 (848)
..+|+||+. +++||.+. +.++++.|+++|+++.+++++|++++++.. ++|.+++.+|.+|++|++++
T Consensus 3 ~~~l~v~~~---~~~P~~~~~~~~~g~~~G~~~dl~~~i~~~~g~~~~~~~~--------~~~~~~~~~l~~g~~D~~~~ 71 (233)
T 1ii5_A 3 AMALKVGVV---GNPPFVFYGEGKNAAFTGISLDVWRAVAESQKWNSEYVRQ--------NSISAGITAVAEGELDILIG 71 (233)
T ss_dssp SCCEEEEEC---CCTTTCEEC-----CEESHHHHHHHHHHHHHTCCEEEEEC--------SCHHHHHHHHHTTSCSEEEE
T ss_pred CceEEEEec---CCCCeEEEecCCCCCEEEEeHHHHHHHHHHcCCcEEEEEe--------CCHHHHHHHHHCCCcCEEEe
Confidence 357999997 47888875 678899999999999999999999666654 25999999999999999998
Q ss_pred ceeeecCce--eeeeecccccccceEEEEeccCCCCCcccccccCchhhHHHHHHHHHHHHHHhhhhhcccCCCCCCCCC
Q 003093 453 DIAIITNRT--KMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPK 530 (848)
Q Consensus 453 ~~~~t~~R~--~~~dfs~p~~~~~~~~v~~~~~~~~~~~~fl~PF~~~vW~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 530 (848)
++..+++|. +.++|+.||+....++++++...
T Consensus 72 ~~~~~~~r~~~~~~~~s~p~~~~~~~~~~~~~~~---------------------------------------------- 105 (233)
T 1ii5_A 72 PISVTPERAAIEGITFTQPYFSSGIGLLIPGTAT---------------------------------------------- 105 (233)
T ss_dssp EEECCHHHHTSTTEEECCCCEEEEEEEEEEGGGT----------------------------------------------
T ss_pred eeecCccccccceeEEccceeecCeEEEEECCCC----------------------------------------------
Confidence 889999998 99999999999999999987750
Q ss_pred CCcchhhhhHHHHhhhcCccccccchhHHHHHHHHhhhhhhhccccceeeeeeeeccccCCCCChHHhhcCCCCeeEEeC
Q 003093 531 RQVVTIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVN 610 (848)
Q Consensus 531 ~~~~~~~~~~~~~l~~~~~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~s~~~i~~~~~ 610 (848)
..+.+++||. |++||+..|
T Consensus 106 -----------------------------------------------------------~~i~~~~dL~--g~~v~~~~g 124 (233)
T 1ii5_A 106 -----------------------------------------------------------PLFRSVGDLK--NKEVAVVRD 124 (233)
T ss_dssp -----------------------------------------------------------TTCSSGGGGT--TCEEEEETT
T ss_pred -----------------------------------------------------------CCCCCHHHhC--CCeEEEECC
Confidence 2788999998 889999999
Q ss_pred chHHHHHHhhhCCCccCcccCCCHHHHHHHhhcCCCCCceEEEEccHHHHHHHHhcCC--cEEEeCCccccCCceeeecC
Q 003093 611 SFARNYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRC--EFSIVGQVFTKNGWGFAFPR 688 (848)
Q Consensus 611 s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~k 688 (848)
+....++.+. ..+++.+.+.++++++|.. |++|+++.+...+.+++++.. ++.+++..+....++++++|
T Consensus 125 ~~~~~~l~~~----~~~~~~~~~~~~~~~~l~~----g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 196 (233)
T 1ii5_A 125 TTAVDWANFY----QADVRETNNLTAAITLLQK----KQVEAVMFDRPALIYYTRQNPNLNLEVTEIRVSLEPYGFVLKE 196 (233)
T ss_dssp SHHHHHHHHT----TCEEEEESSHHHHHHHHHT----TSCSEEEEEHHHHHHHHHHCGGGCEEECSCCSEEEEEEEEEET
T ss_pred ccHHHHHHHc----CCCeEEcCCHHHHHHHHHc----CCccEEEeCHHHHHHHHHhCCCCcEEEeCccccccceEEEEcC
Confidence 9888888542 3467788899999999999 999999999999999888764 68888877777889999999
Q ss_pred CCCchHHHHHHHHhhhccCchHHHHHhhcc
Q 003093 689 DSPLAVDISTAILKLSENGDLQRIHDKWLL 718 (848)
Q Consensus 689 ~spl~~~in~~i~~l~e~G~~~~~~~kw~~ 718 (848)
++|+.+.+|++|.+|.++|.+++|.+||+.
T Consensus 197 ~~~l~~~~~~~l~~l~~~g~~~~i~~k~~~ 226 (233)
T 1ii5_A 197 NSPLQKTINVEMLNLLYSRVIAEFTERWLG 226 (233)
T ss_dssp TCTTHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred CchHHHHHHHHHHHHHhCCcHHHHHHHHcC
Confidence 999999999999999999999999999987
No 56
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0
Probab=99.86 E-value=2.5e-21 Score=197.47 Aligned_cols=219 Identities=18% Similarity=0.323 Sum_probs=193.9
Q ss_pred CCceEEEEecCCCCccceEEeCCCcceeeeeHHHHHHHHHhCCCCcceEEeeCCCCCCCCChhHHHHHHhcCeeeEEeec
Q 003093 374 NGRHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGD 453 (848)
Q Consensus 374 ~g~~lrv~v~~~~~~~p~~~~~~~~~~~G~~~dll~~i~~~l~~~~~~~~~~~~~~~~n~s~~~~i~~l~~g~~D~~~~~ 453 (848)
..++|+||+. +.++||.+.+.++.+.|+++||++++++++|++++++..+ |.+++.++.+|++|++ .+
T Consensus 9 ~~~~l~v~~~--~~~~P~~~~~~~g~~~G~~~dl~~~i~~~~g~~~~~~~~~---------~~~~~~~l~~g~~D~~-~~ 76 (234)
T 3h7m_A 9 RHRTIVVGGD--RDYPPYEFIDQNGKPAGYNVELTRAIAEVMGMTVEFRLGA---------WSEMFSALKSGRVDVL-QG 76 (234)
T ss_dssp SSSCEEEEEE--TEETTTEEECTTSCEESHHHHHHHHHHHHHTCCEEEEEEC---------GGGHHHHHHTTSSSEE-EE
T ss_pred CCCEEEEEec--CCCCCeEEECCCCCEeeeEHHHHHHHHHHcCCceEEEeCC---------HHHHHHHHhCCCeeEE-Ee
Confidence 4578999985 3789999877789999999999999999999998777543 9999999999999996 55
Q ss_pred eeeecCceeeeeecccccccceEEEEeccCCCCCcccccccCchhhHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCc
Q 003093 454 IAIITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKRQV 533 (848)
Q Consensus 454 ~~~t~~R~~~~dfs~p~~~~~~~~v~~~~~~~~~~~~fl~PF~~~vW~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 533 (848)
+..+++|.+.+.||.||+....++++++..
T Consensus 77 ~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~-------------------------------------------------- 106 (234)
T 3h7m_A 77 ISWSEKRARQIDFTPPHTIVYHAIFARRDS-------------------------------------------------- 106 (234)
T ss_dssp EECCHHHHTTEEEEEEEEEEEEEEEEESSS--------------------------------------------------
T ss_pred ccCCHhHHhhcCCCccccccceEEEEECCC--------------------------------------------------
Confidence 899999999999999999999999998776
Q ss_pred chhhhhHHHHhhhcCccccccchhHHHHHHHHhhhhhhhccccceeeeeeeeccccCCCCChHHhhcCCCCeeEEeCchH
Q 003093 534 VTIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVNSFA 613 (848)
Q Consensus 534 ~~~~~~~~~~l~~~~~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~s~~~i~~~~~s~~ 613 (848)
+.+++++||. +++||+..|+..
T Consensus 107 --------------------------------------------------------~~~~~~~dL~--g~~i~~~~g~~~ 128 (234)
T 3h7m_A 107 --------------------------------------------------------PPAAGLEDLR--GRKVALHRDGIM 128 (234)
T ss_dssp --------------------------------------------------------CCCSSGGGGT--TSCEEEETTSHH
T ss_pred --------------------------------------------------------CCCCCHHHhC--CCEEEEEeCchH
Confidence 4589999997 899999999988
Q ss_pred HHHHHhhhCCCccCcccCCCHHHHHHHhhcCCCCCceEEEEccHHHHHHHHhcC--CcEEEeCCccccCCceeeecCCCC
Q 003093 614 RNYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTR--CEFSIVGQVFTKNGWGFAFPRDSP 691 (848)
Q Consensus 614 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~~~k~sp 691 (848)
..++.+ ..+..+++.+++.++.+++|.+ |++|+++.+...+.+++++. .++.+++..+...+++++++|++|
T Consensus 129 ~~~l~~--~~~~~~~~~~~~~~~~~~~l~~----g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (234)
T 3h7m_A 129 HEYLAE--RGYGKDLVLTPTPADALRLLAA----GGCDYAVVAMVPGMYIIRENRLTNLVPVARSIAAQRYGYAVRQGDA 202 (234)
T ss_dssp HHHHHT--TTCGGGEEEESSHHHHHHHHHT----TSSSEEEEEHHHHHHHHHHTTCTTEEEEEEEEEEEEEEEEEETTCH
T ss_pred HHHHHh--cCCCceEEEeCCHHHHHHHHHc----CCceEEEeccHHHHHHHHhcCCCceEEeccccCCCceEEEEeCCCH
Confidence 888854 2334578888999999999999 99999999999999888774 368888877788889999999998
Q ss_pred -chHHHHHHHHhhhccCchHHHHHhhcc
Q 003093 692 -LAVDISTAILKLSENGDLQRIHDKWLL 718 (848)
Q Consensus 692 -l~~~in~~i~~l~e~G~~~~~~~kw~~ 718 (848)
+.+.||++|.+|.++|.+++|.+||+.
T Consensus 203 ~l~~~l~~~l~~l~~~g~~~~i~~k~~~ 230 (234)
T 3h7m_A 203 ELLARFSEGLAILRKTGQYEAIRAKWLG 230 (234)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHhcc
Confidence 999999999999999999999999987
No 57
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae}
Probab=99.86 E-value=1.5e-21 Score=200.75 Aligned_cols=223 Identities=15% Similarity=0.197 Sum_probs=190.2
Q ss_pred CceEEEEecCCCCccceEEeCCCcceeeeeHHHHHHHHHhCC-CCcceEEeeCCCCCCCCChhHHHHHHhcCeeeEEeec
Q 003093 375 GRHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLP-YAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGD 453 (848)
Q Consensus 375 g~~lrv~v~~~~~~~p~~~~~~~~~~~G~~~dll~~i~~~l~-~~~~~~~~~~~~~~~n~s~~~~i~~l~~g~~D~~~~~ 453 (848)
.++|+||+.. .|+||.+ ..++++.|+++||++++++++| ++++++.. +|.+++.+|.+|++|+++++
T Consensus 7 ~~~l~v~~~~--~~~P~~~-~~~g~~~G~~~dl~~~i~~~~g~~~~~~~~~---------~~~~~~~~l~~g~~D~~~~~ 74 (246)
T 4eq9_A 7 KKEIIVATNG--SPRPFIY-EENGELTGYEIEVVRAIFKDSDKYDVKFEKT---------EWSGVFAGLDADRYNMAVNN 74 (246)
T ss_dssp CEEEEEEECC--CSTTTSE-EETTEEESHHHHHHHHHHTTCSSEEEEEEEC---------CHHHHHHHHHTTSCSEECSS
T ss_pred CCEEEEEeCC--CcCCeEE-cCCCCCcccHHHHHHHHHHHcCCceEEEEeC---------CHHHHHHHHhCCCcCEEecc
Confidence 4689999974 6888887 4688999999999999999999 98666654 49999999999999999988
Q ss_pred eeeecCceeeeeecccccccceEEEEeccCCCCCcccccccCchhhHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCc
Q 003093 454 IAIITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKRQV 533 (848)
Q Consensus 454 ~~~t~~R~~~~dfs~p~~~~~~~~v~~~~~~~~~~~~fl~PF~~~vW~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 533 (848)
++.+++|.+.+.||.||+..+.++++++..
T Consensus 75 ~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~-------------------------------------------------- 104 (246)
T 4eq9_A 75 LSYTKERAEKYLYAAPIAQNPNVLVVKKDD-------------------------------------------------- 104 (246)
T ss_dssp CCCCHHHHHHEEECCCCEECCEEEEEETTC--------------------------------------------------
T ss_pred cccChhhhhceeeccceecCceEEEEECCC--------------------------------------------------
Confidence 999999999999999999999999999755
Q ss_pred chhhhhHHHHhhhcCccccccchhHHHHHHHHhhhhhhhccccceeeeeeeeccccCCCCChHHhhcCCCCeeEEeCchH
Q 003093 534 VTIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVNSFA 613 (848)
Q Consensus 534 ~~~~~~~~~~l~~~~~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~s~~~i~~~~~s~~ 613 (848)
.++++++||. |++||+..|+..
T Consensus 105 --------------------------------------------------------~~i~~~~dL~--g~~i~~~~g~~~ 126 (246)
T 4eq9_A 105 --------------------------------------------------------SSIKSLDDIG--GKSTEVVQATTS 126 (246)
T ss_dssp --------------------------------------------------------CSCSSGGGCT--TCEEEECTTCHH
T ss_pred --------------------------------------------------------CCCCCHHHhC--CCEEEEecCccH
Confidence 5789999998 899999999988
Q ss_pred HHHHHh---hhCCCccCcc-cCCCHHHHHHHhhcCCCCCceEEEEccHHHHHHHHhcCC--cEEEeCCccccCC-ceeee
Q 003093 614 RNYLVD---ELNIDESRLV-PLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRC--EFSIVGQVFTKNG-WGFAF 686 (848)
Q Consensus 614 ~~~l~~---~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~-~~~~~ 686 (848)
..++.+ .......++. ...+.++++++|.+ |++|+++.+...+.+++++.. ++.++.......+ +++++
T Consensus 127 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~----g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (246)
T 4eq9_A 127 AKQLEAYNAEHTDNPTILNYTKADFQQIMVRLSD----GQFDYKIFDKIGVETVIKNQGLDNLKVIELPSDQQPYVYPLL 202 (246)
T ss_dssp HHHHHHHHHHCTTSCCEEEECCCCHHHHHHHHHT----TSSSEEEEEHHHHHHHHHHHTCTTEEEEECCCSSCCEECCEE
T ss_pred HHHHHHHHhhCCCcceEEEecCCCHHHHHHHHHc----CCceEEEecHHHHHHHHHhCCCCCceEecCcCCCCCcEEEEE
Confidence 888755 2221112333 23588999999999 999999999999999888754 5888887666665 89999
Q ss_pred cCCCC-chHHHHHHHHhhhccCchHHHHHhhcccCC
Q 003093 687 PRDSP-LAVDISTAILKLSENGDLQRIHDKWLLRSA 721 (848)
Q Consensus 687 ~k~sp-l~~~in~~i~~l~e~G~~~~~~~kw~~~~~ 721 (848)
+|++| +.+.||++|.+|.++|.+++|.+||+....
T Consensus 203 ~k~~~~l~~~ln~~l~~l~~~g~~~~i~~k~~~~~~ 238 (246)
T 4eq9_A 203 AQGQDELKSFVDKRIKELYKDGTLEKLSKQFFGDTY 238 (246)
T ss_dssp ETTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHSSCC
T ss_pred cCCCHHHHHHHHHHHHHHHhCCcHHHHHHHhcCCCC
Confidence 99998 999999999999999999999999998443
No 58
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=99.86 E-value=3.7e-21 Score=196.99 Aligned_cols=222 Identities=18% Similarity=0.290 Sum_probs=187.4
Q ss_pred CceEEEEecCCCCccceEEeCCCcceeeeeHHHHHHHHHhCCCCcceEEeeCCCCCCCCChhHHHHHHhcCeeeEEeece
Q 003093 375 GRHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDI 454 (848)
Q Consensus 375 g~~lrv~v~~~~~~~p~~~~~~~~~~~G~~~dll~~i~~~l~~~~~~~~~~~~~~~~n~s~~~~i~~l~~g~~D~~~~~~ 454 (848)
.++||||+. ++|+||.+.+.++++.|+++|+++++++++|++++++.. +|.+++.+|.+|++|++++++
T Consensus 3 ~~~l~v~~~--~~~~P~~~~~~~g~~~G~~~dl~~~i~~~~g~~~~~~~~---------~~~~~~~~l~~g~~D~~~~~~ 71 (239)
T 1lst_A 3 PQTVRIGTD--TTYAPFSSKDAKGEFIGFDIDLGNEMCKRMQVKCTWVAS---------DFDALIPSLKAKKIDAIISSL 71 (239)
T ss_dssp CSEEEEEEC--SCBTTTBEECTTCCEESHHHHHHHHHHHHHTCEEEEEEC---------CGGGHHHHHHTTSCSEECSSC
T ss_pred cceEEEEEC--CCcCCeeEECCCCCEeeEHHHHHHHHHHHHCCeEEEEeC---------CHHHHHHHHhCCCCCEEEECc
Confidence 468999994 378999886677899999999999999999999666654 499999999999999999889
Q ss_pred eeecCceeeeeecccccccceEEEEeccCCCCCcccccccCchhhHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCcc
Q 003093 455 AIITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKRQVV 534 (848)
Q Consensus 455 ~~t~~R~~~~dfs~p~~~~~~~~v~~~~~~~~~~~~fl~PF~~~vW~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 534 (848)
+.+++|.+.++||.||+..+.++++++..
T Consensus 72 ~~t~~r~~~~~~s~p~~~~~~~l~~~~~~--------------------------------------------------- 100 (239)
T 1lst_A 72 SITDKRQQEIAFSDKLYAADSRLIAAKGS--------------------------------------------------- 100 (239)
T ss_dssp BCCHHHHHHCEECSCSBCCCEEEEEETTC---------------------------------------------------
T ss_pred CcCHHHhhceeecccceeCceEEEEeCCC---------------------------------------------------
Confidence 99999999999999999999999999765
Q ss_pred hhhhhHHHHhhhcCccccccchhHHHHHHHHhhhhhhhccccceeeeeeeeccccCCCCChHHhhcCCCCeeEEeCchHH
Q 003093 535 TIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVNSFAR 614 (848)
Q Consensus 535 ~~~~~~~~~l~~~~~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~s~~~i~~~~~s~~~ 614 (848)
+...+++||. |++||+..|+...
T Consensus 101 -------------------------------------------------------~~~~~~~dL~--g~~v~~~~g~~~~ 123 (239)
T 1lst_A 101 -------------------------------------------------------PIQPTLESLK--GKHVGVLQGSTQE 123 (239)
T ss_dssp -------------------------------------------------------CCCSSHHHHT--TCEEEEETTSHHH
T ss_pred -------------------------------------------------------CCCCCHHHhC--CCEEEEEcCccHH
Confidence 2225899997 8899999999888
Q ss_pred HHHHhhhCCCccCcccCCCHHHHHHHhhcCCCCCceEEEEccHHHHHH-HHhcC--CcEEEeCCcccc-----CCceeee
Q 003093 615 NYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAEL-FLSTR--CEFSIVGQVFTK-----NGWGFAF 686 (848)
Q Consensus 615 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~-~~~~~--~~l~~~~~~~~~-----~~~~~~~ 686 (848)
.++.+....+..+++.+++.++.+++|.. |++|+++.+...+.+ ++.+. .++.+++..+.. .++++++
T Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~----G~vDa~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 199 (239)
T 1lst_A 124 AYANDNWRTKGVDVVAYANQDLIYSDLTA----GRLDAALQDEVAASEGFLKQPAGKEYAFAGPSVKDKKYFGDGTGVGL 199 (239)
T ss_dssp HHHHHHTGGGTCEEEEESSHHHHHHHHHT----TSCSEEEEEHHHHHHHTTTSGGGTTEEECSSCBCCHHHHCSSBCCEE
T ss_pred HHHHHhcccCCCeEEEcCCHHHHHHHHHc----CCCCEEEeCcHHHHHHHHhccCCCceEEeccccccccccCcceEEEE
Confidence 88865432233567788999999999999 999999999888754 45443 358877765443 3789999
Q ss_pred cCCCC-chHHHHHHHHhhhccCchHHHHHhhccc
Q 003093 687 PRDSP-LAVDISTAILKLSENGDLQRIHDKWLLR 719 (848)
Q Consensus 687 ~k~sp-l~~~in~~i~~l~e~G~~~~~~~kw~~~ 719 (848)
+|++| +.+.||++|.+|.++|.+++|.+||+..
T Consensus 200 ~k~~~~l~~~~~~~l~~l~~~G~~~~i~~k~~~~ 233 (239)
T 1lst_A 200 RKDDTELKAAFDKALTELRQDGTYDKMAKKYFDF 233 (239)
T ss_dssp CTTCHHHHHHHHHHHHHHHHTTHHHHHHHTTCSS
T ss_pred eCCCHHHHHHHHHHHHHHHHCccHHHHHHHHcCC
Confidence 99998 9999999999999999999999999873
No 59
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=99.86 E-value=2.6e-21 Score=201.98 Aligned_cols=219 Identities=19% Similarity=0.272 Sum_probs=191.2
Q ss_pred CceEEEEecCCCCccceEEeCCCcceeeeeHHHHHHHHHhCCCCcceEEeeCCCCCCCCChhHHHHHHhcCeeeEEeece
Q 003093 375 GRHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDI 454 (848)
Q Consensus 375 g~~lrv~v~~~~~~~p~~~~~~~~~~~G~~~dll~~i~~~l~~~~~~~~~~~~~~~~n~s~~~~i~~l~~g~~D~~~~~~ 454 (848)
.++||||+.. +|+||.+.+.++++.|+++||++++++++|++++++.. .+|.+++.+|.+|++|+++ ++
T Consensus 31 ~~~l~v~~~~--~~~P~~~~~~~g~~~G~~~dl~~~i~~~lg~~~~~~~~--------~~~~~~~~~l~~G~~D~~~-~~ 99 (267)
T 3mpk_A 31 HPVVKVAVLN--LFAPFTLFRTDEQFGGISAAVLQLLQLRTGLDFEIIGV--------DTVEELIAKLRSGEADMAG-AL 99 (267)
T ss_dssp CSEEEEEEET--EETTTEECCTTCCCBSHHHHHHHHHHHHHCCEEEEEEE--------SSHHHHHHHHHHTSCSEEE-EE
T ss_pred CCcEEEEeCC--CCCCeEEECCCCcEeeeHHHHHHHHHHHHCCeEEEEec--------CCHHHHHHHHHCCCccEEe-cc
Confidence 4689999963 68999986678899999999999999999999776644 3599999999999999986 69
Q ss_pred eeecCceeeeeecccccccceEEEEeccCCCCCcccccccCchhhHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCcc
Q 003093 455 AIITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKRQVV 534 (848)
Q Consensus 455 ~~t~~R~~~~dfs~p~~~~~~~~v~~~~~~~~~~~~fl~PF~~~vW~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 534 (848)
+.+++|.+.+.||.||+..+.++++++..
T Consensus 100 ~~t~~r~~~~~fs~p~~~~~~~l~~~~~~--------------------------------------------------- 128 (267)
T 3mpk_A 100 FVNSARESFLSFSRPYVRNGMVIVTRQDP--------------------------------------------------- 128 (267)
T ss_dssp ECCGGGTTTEEECSCSEEECEEEEEESST---------------------------------------------------
T ss_pred cCChhhhcceEechhhccCceEEEEECCC---------------------------------------------------
Confidence 99999999999999999999999999876
Q ss_pred hhhhhHHHHhhhcCccccccchhHHHHHHHHhhhhhhhccccceeeeeeeeccccCCCCChHHhhcCCCCeeEEeCchHH
Q 003093 535 TIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVNSFAR 614 (848)
Q Consensus 535 ~~~~~~~~~l~~~~~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~s~~~i~~~~~s~~~ 614 (848)
+.+++++||. |++||+..|+...
T Consensus 129 -------------------------------------------------------~~i~~~~dL~--g~~i~v~~g~~~~ 151 (267)
T 3mpk_A 129 -------------------------------------------------------DAPVDADHLD--GRTVALVRNSAAI 151 (267)
T ss_dssp -------------------------------------------------------TSCSSGGGCT--TCEEEEETTCTHH
T ss_pred -------------------------------------------------------CCCCCHHHHC--CCEEEEeCCchhH
Confidence 5689999998 8999999999988
Q ss_pred HHHHhhhCCCccCcccCCCHHHHHHHhhcCCCCCceEEEEccHHHHHHHHhc--CCcEEEeCCcc-ccCCceeeecCCCC
Q 003093 615 NYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLST--RCEFSIVGQVF-TKNGWGFAFPRDSP 691 (848)
Q Consensus 615 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~--~~~l~~~~~~~-~~~~~~~~~~k~sp 691 (848)
.++.+ ..+..+++.+++.++++++|.+ |++|+++.+...+.+++++ ..++.+++... .+.+++++++|++|
T Consensus 152 ~~l~~--~~~~~~~~~~~~~~~~l~~L~~----GrvDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~~~ 225 (267)
T 3mpk_A 152 PLLQR--RYPQAKVVTADNPSEAMLMVAN----GQADAVVQTQISASYYVNRYFAGKLRIASALDLPPAEIALATTRGQT 225 (267)
T ss_dssp HHHHH--HCTTSEEEEESSHHHHHHHHHH----TSCSEEEEEHHHHHHHHHHHCTTTEEEEEECSSCCEEEEEEEETTCH
T ss_pred HHHHH--hCCCcEEEEeCCHHHHHHHHHc----CCCCEEEecHHHHHHHHHhcCCCceEEEeccCCCceeEEEEEcCCCH
Confidence 88865 3445678889999999999999 9999999999999998887 34677776533 46788999999998
Q ss_pred -chHHHHHHHHhhhccCchHHHHHhhccc
Q 003093 692 -LAVDISTAILKLSENGDLQRIHDKWLLR 719 (848)
Q Consensus 692 -l~~~in~~i~~l~e~G~~~~~~~kw~~~ 719 (848)
+.+.||++|.+|.++| +++|.+||+..
T Consensus 226 ~l~~~ln~~l~~l~~~~-~~~i~~kw~~~ 253 (267)
T 3mpk_A 226 ELMSILNKALYSISNDE-LASIISRWRGS 253 (267)
T ss_dssp HHHHHHHHHHHTSCHHH-HHHHHHTTC--
T ss_pred HHHHHHHHHHHhCCHHH-HHHHHHhhccC
Confidence 9999999999999996 99999999983
No 60
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp}
Probab=99.85 E-value=1e-20 Score=192.25 Aligned_cols=218 Identities=22% Similarity=0.365 Sum_probs=189.4
Q ss_pred CCceEEEEecCCCCccceEEeCCCcceeeeeHHHHHHHHHhCCCCcceEEeeCCCCCCCCChhHHHHHHhcCeeeEEeec
Q 003093 374 NGRHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGD 453 (848)
Q Consensus 374 ~g~~lrv~v~~~~~~~p~~~~~~~~~~~G~~~dll~~i~~~l~~~~~~~~~~~~~~~~n~s~~~~i~~l~~g~~D~~~~~ 453 (848)
..++|+||+. ++|+||.+.+.++++.|+++|+++.+++++|++++++.. +|.+++.++.+|++|+++++
T Consensus 4 ~a~~l~v~~~--~~~~P~~~~~~~g~~~G~~~dl~~~i~~~~g~~~~~~~~---------~~~~~~~~l~~g~~D~~~~~ 72 (229)
T 2y7i_A 4 SARTLHFGTS--ATYAPYEFVDADNKIVGFDIDVANAVCKEMQAECSFTNQ---------SFDSLIPSLRFKKFDAVIAG 72 (229)
T ss_dssp SCCEEEEEEC--CCBTTTBEECTTSCEESHHHHHHHHHHHHTTCEEEEEEC---------CGGGHHHHHHTTSCSEECSS
T ss_pred cCCcEEEEeC--CCcCCceEECCCCCCcceeHHHHHHHHHHhCCeEEEEEc---------CHHHHHHHHhCCCceEEEec
Confidence 3578999996 478898886667899999999999999999999666654 49999999999999999977
Q ss_pred eeeecCceeeeeeccccccc-ceEEEEeccCCCCCcccccccCchhhHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCC
Q 003093 454 IAIITNRTKMADFTQPYIES-GLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKRQ 532 (848)
Q Consensus 454 ~~~t~~R~~~~dfs~p~~~~-~~~~v~~~~~~~~~~~~fl~PF~~~vW~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 532 (848)
+..+++|.+.+.|+.||+.. ..++++++.
T Consensus 73 ~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~-------------------------------------------------- 102 (229)
T 2y7i_A 73 MDMTPKREQQVSFSQPYYEGLSAVVVTRKG-------------------------------------------------- 102 (229)
T ss_dssp CBCCHHHHTTSEECSCSBCCCCEEEEEETT--------------------------------------------------
T ss_pred CccCHHHhcceeeccccccCCcEEEEEeCC--------------------------------------------------
Confidence 89999999999999999999 999988753
Q ss_pred cchhhhhHHHHhhhcCccccccchhHHHHHHHHhhhhhhhccccceeeeeeeeccccCCCCChHHhhcCCCCeeEEeCch
Q 003093 533 VVTIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVNSF 612 (848)
Q Consensus 533 ~~~~~~~~~~~l~~~~~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~s~~~i~~~~~s~ 612 (848)
. +++++||. |++||+..|+.
T Consensus 103 ---------------------------------------------------------~-~~~~~dL~--g~~v~~~~g~~ 122 (229)
T 2y7i_A 103 ---------------------------------------------------------A-YHTFADLK--GKKVGLENGTT 122 (229)
T ss_dssp ---------------------------------------------------------S-CCSTGGGT--TCEEEEETTSH
T ss_pred ---------------------------------------------------------C-CCCHHHHC--CCEEEEecCCc
Confidence 3 67899997 88999999998
Q ss_pred HHHHHHhhhCCCccCcccCCCHHHHHHHhhcCCCCCceEEEEccHHHHHHHHhcCCcEEEeCCccc-----cCCceeeec
Q 003093 613 ARNYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRCEFSIVGQVFT-----KNGWGFAFP 687 (848)
Q Consensus 613 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~~~~~~ 687 (848)
...++.+. .+..+++.+.+.++++++|.+ |++|+++.+...+.+++++..++.+++..+. ..+++++++
T Consensus 123 ~~~~l~~~--~~~~~~~~~~~~~~~~~~l~~----grvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (229)
T 2y7i_A 123 HQRYLQDK--QQAITPVAYDSYLNAFTDLKN----NRLEGVFGDVAAIGKWLKNNPDYAIMDERASDPDYYGKGLGIAVR 196 (229)
T ss_dssp HHHHHHHH--CTTSEEEEESCHHHHHHHHHT----TSCSEEEEEHHHHHHHHTTCTTEEECSCCBCCTTTSCCCBCCEEC
T ss_pred HHHHHHHh--CCCCeEEecCCHHHHHHHHHc----CCcCEEEechHHHHHHHHhCCCeEEeccccccccccccceEEEEe
Confidence 88888553 334567788999999999999 9999999999999999988778888876543 247899999
Q ss_pred CCCC-chHHHHHHHHhhhccCchHHHHHhhcc
Q 003093 688 RDSP-LAVDISTAILKLSENGDLQRIHDKWLL 718 (848)
Q Consensus 688 k~sp-l~~~in~~i~~l~e~G~~~~~~~kw~~ 718 (848)
|++| +.+.||++|.++.++|.+++|.+||+.
T Consensus 197 ~~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~ 228 (229)
T 2y7i_A 197 KDNDALLQEINAALDKVKASPEYAQMQEKWFT 228 (229)
T ss_dssp TTCHHHHHHHHHHHHHHHTSHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHhCChHHHHHHHHcC
Confidence 9988 999999999999999999999999975
No 61
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=99.85 E-value=6.6e-21 Score=193.07 Aligned_cols=217 Identities=24% Similarity=0.394 Sum_probs=189.6
Q ss_pred ceEEEEecCCCCccceEEeCCCcceeeeeHHHHHHHHHhCCCCcceEEeeCCCCCCCCChhHHHHHHhcCeeeEEeecee
Q 003093 376 RHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDIA 455 (848)
Q Consensus 376 ~~lrv~v~~~~~~~p~~~~~~~~~~~G~~~dll~~i~~~l~~~~~~~~~~~~~~~~n~s~~~~i~~l~~g~~D~~~~~~~ 455 (848)
.+|+||+. ++++||.+.++ +++.|+++|+++.+++++|++++++..+ |.+++.++.+|++|++++++.
T Consensus 3 ~~l~v~~~--~~~~P~~~~~~-g~~~G~~~dl~~~~~~~~g~~~~~~~~~---------~~~~~~~l~~g~~D~~~~~~~ 70 (226)
T 1wdn_A 3 KKLVVATD--TAFVPFEFKQG-DLYVGFDVDLWAAIAKELKLDYELKPMD---------FSGIIPALQTKNVDLALAGIT 70 (226)
T ss_dssp -CEEEEEE--SSBTTTBEEET-TEEESHHHHHHHHHHHHHTCCEEEEEEC---------GGGHHHHHHTTSSSEEEEEEE
T ss_pred ceEEEEEC--CCCCCeeEecC-CcEEEeeHHHHHHHHHHhCCEEEEEECC---------HHHHHHHHhCCCCCEEEEcCc
Confidence 47899987 37888877443 8999999999999999999997776543 999999999999999998888
Q ss_pred eecCceeeeeecccccccceEEEEeccCCCCCcccccccCchhhHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCcch
Q 003093 456 IITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKRQVVT 535 (848)
Q Consensus 456 ~t~~R~~~~dfs~p~~~~~~~~v~~~~~~~~~~~~fl~PF~~~vW~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 535 (848)
.+++|.+.+.|+.||+....++++++..
T Consensus 71 ~~~~r~~~~~~~~p~~~~~~~~~~~~~~---------------------------------------------------- 98 (226)
T 1wdn_A 71 ITDERKKAIDFSDGYYKSGLLVMVKANN---------------------------------------------------- 98 (226)
T ss_dssp CCHHHHTTSEECSCCEEEEEEEEEETTC----------------------------------------------------
T ss_pred CCHHHhCccccccchhcCceEEEEeCCC----------------------------------------------------
Confidence 9999999999999999999999998765
Q ss_pred hhhhHHHHhhhcCccccccchhHHHHHHHHhhhhhhhccccceeeeeeeeccccCCCCChHHhhcCCCCeeEEeCchHHH
Q 003093 536 IFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVNSFARN 615 (848)
Q Consensus 536 ~~~~~~~~l~~~~~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~s~~~i~~~~~s~~~~ 615 (848)
+.+++++||. |++||+..|+....
T Consensus 99 ------------------------------------------------------~~i~~~~dL~--g~~i~~~~g~~~~~ 122 (226)
T 1wdn_A 99 ------------------------------------------------------NDVKSVKDLD--GKVVAVKSGTGSVD 122 (226)
T ss_dssp ------------------------------------------------------CSCSSSTTTT--TCEEEEETTSHHHH
T ss_pred ------------------------------------------------------CCCCCHHHhC--CCEEEEEcCCcHHH
Confidence 4588899997 88999999998888
Q ss_pred HHHhhhCCCccCcccCCCHHHHHHHhhcCCCCCceEEEEccHHHHHHHHhcCC--cEEEeCCccccCCceeeecCCCC-c
Q 003093 616 YLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRC--EFSIVGQVFTKNGWGFAFPRDSP-L 692 (848)
Q Consensus 616 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~k~sp-l 692 (848)
++.+. .+..+++.+.+.++.+++|.+ |++|+++.+...+.+++++.. ++.+++..+....++++++|++| +
T Consensus 123 ~l~~~--~~~~~~~~~~~~~~~~~~l~~----g~vDa~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~~~~l 196 (226)
T 1wdn_A 123 YAKAN--IKTKDLRQFPNIDNAYMELGT----NRADAVLHDTPNILYFIKTAGNGQFKAVGDSLEAQQYGIAFPKGSDEL 196 (226)
T ss_dssp HHHHH--CCCSEEEEESSHHHHHHHHHT----TSCSEEEEEHHHHHHHHHTTTTTTEEEEEEEEEEEEEEEEECTTCHHH
T ss_pred HHHHh--CCCceEEEeCCHHHHHHHHHc----CCcCEEEeCcHHHHHHHHhCCCCceEEecCCcccCceEEEEeCCCHHH
Confidence 88553 234567788899999999999 999999999999999888763 68888777777789999999986 9
Q ss_pred hHHHHHHHHhhhccCchHHHHHhhcc
Q 003093 693 AVDISTAILKLSENGDLQRIHDKWLL 718 (848)
Q Consensus 693 ~~~in~~i~~l~e~G~~~~~~~kw~~ 718 (848)
.+.+|++|.++.++|.+++|.+||+.
T Consensus 197 ~~~~~~~l~~l~~~g~~~~i~~k~~~ 222 (226)
T 1wdn_A 197 RDKVNGALKTLRENGTYNEIYKKWFG 222 (226)
T ss_dssp HHHHHHHHHHHHHTSHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHcC
Confidence 99999999999999999999999987
No 62
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=99.84 E-value=1.1e-20 Score=196.31 Aligned_cols=222 Identities=18% Similarity=0.287 Sum_probs=191.1
Q ss_pred CCceEEEEecCCCCccceEEeCCCcceeeeeHHHHHHHHHhCCCCcceEEeeCCCCCCCCChhHHHHHHhcCeeeEEeec
Q 003093 374 NGRHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGD 453 (848)
Q Consensus 374 ~g~~lrv~v~~~~~~~p~~~~~~~~~~~G~~~dll~~i~~~l~~~~~~~~~~~~~~~~n~s~~~~i~~l~~g~~D~~~~~ 453 (848)
..++|+|++. +.|+||.+.+.++++.|+++|+++.+++++|++++++.. +|.+++.+|.+|++|+++++
T Consensus 27 ~~~~l~v~~~--~~~~P~~~~~~~g~~~G~~~dl~~~i~~~~g~~~~~~~~---------~~~~~~~~l~~g~~D~~~~~ 95 (259)
T 4dz1_A 27 EGRTLNVAVS--PASPPMLFKSADGKLQGIDLELFSSYCQSRHCKLNITEY---------AWDGMLGAVASGQADVAFSG 95 (259)
T ss_dssp TTCEEEEEEC--CCBTTTBEECTTCCEESHHHHHHHHHHHHHTCEEEEEEC---------CHHHHHHHHHHTSSSEEEEE
T ss_pred cCCeEEEEEC--CCCCCeEEECCCCCEEEeHHHHHHHHHHHhCCeEEEEEc---------CHHHHHHHHhCCCCCEEEEC
Confidence 4578999996 378899886678899999999999999999999666554 49999999999999999988
Q ss_pred eeeecCceeeeeecccccccceEEEEeccCCCCCcccccccCchhhHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCc
Q 003093 454 IAIITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKRQV 533 (848)
Q Consensus 454 ~~~t~~R~~~~dfs~p~~~~~~~~v~~~~~~~~~~~~fl~PF~~~vW~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 533 (848)
++.+++|.+.++||.||+..+.+++++++.
T Consensus 96 ~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~-------------------------------------------------- 125 (259)
T 4dz1_A 96 ISITDKRKKVIDFSEPYYINSFYLVSMANH-------------------------------------------------- 125 (259)
T ss_dssp EECCHHHHTTEEECCCSEEEEEEEEEETTS--------------------------------------------------
T ss_pred CcCCHHHhhccccccchhhCceEEEEEcCC--------------------------------------------------
Confidence 999999999999999999999999998765
Q ss_pred chhhhhHHHHhhhcCccccccchhHHHHHHHHhhhhhhhccccceeeeeeeeccccCCCCChHHhhcCCCCeeEEeCchH
Q 003093 534 VTIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVNSFA 613 (848)
Q Consensus 534 ~~~~~~~~~~l~~~~~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~s~~~i~~~~~s~~ 613 (848)
...|++++||. |++||+..|+..
T Consensus 126 -------------------------------------------------------~~~i~~~~dL~--g~~v~v~~g~~~ 148 (259)
T 4dz1_A 126 -------------------------------------------------------KITLNNLNELN--KYSIGYPRGMAY 148 (259)
T ss_dssp -------------------------------------------------------CCCCCSGGGGG--GSCEEEETTSTH
T ss_pred -------------------------------------------------------CCCCCCHHHhC--CCEEEEeCCcHH
Confidence 14789999998 899999999988
Q ss_pred HHHHHhhhCC---Cc-cCcccCCCHHHHHHHhhcCCCCCceEEEEccHHHHHHHHhcC-CcEEEeCCccccCCceeeecC
Q 003093 614 RNYLVDELNI---DE-SRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTR-CEFSIVGQVFTKNGWGFAFPR 688 (848)
Q Consensus 614 ~~~l~~~~~~---~~-~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~k 688 (848)
..++.+.... +. .+++.+++.++++++|.+ |++|+++.+...+.+++++. .++..........+++++++|
T Consensus 149 ~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~----G~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 224 (259)
T 4dz1_A 149 SDLIKNDLEPKGYYSLSKVKLYPTYNETMADLKN----GNLDLAFIEEPVYFTFKNKKKMPIESRYVFKNVDQLGIAFKK 224 (259)
T ss_dssp HHHHHHHTGGGTSCCGGGCEEESSHHHHHHHHHH----TSCSEEEEEHHHHHHHHHTSCCCEEEEEEEEEEEEEEEEEET
T ss_pred HHHHHHhcccccccccceeEecCCHHHHHHHHHc----CCCCEEEecHHHHHHHhccCCCceEeecccCCCceEEEEEeC
Confidence 8888653221 11 467788999999999999 99999999999887777654 467666666667889999999
Q ss_pred CCCchHHHHHHHHhhhccCchHHHHHhhcc
Q 003093 689 DSPLAVDISTAILKLSENGDLQRIHDKWLL 718 (848)
Q Consensus 689 ~spl~~~in~~i~~l~e~G~~~~~~~kw~~ 718 (848)
++++.+.||++|.+ ..++.++++.++|..
T Consensus 225 ~~~l~~~ln~~l~~-~g~~~l~~~~~~~~~ 253 (259)
T 4dz1_A 225 GSPVRDDFNLWLKE-QGPQKISGIVDSWMK 253 (259)
T ss_dssp TCHHHHHHHHHHHH-HCHHHHHHHHHHHTC
T ss_pred ChHHHHHHHHHHHh-CCCeehHHHHHHHHh
Confidence 99999999999999 888999999999987
No 63
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A*
Probab=99.83 E-value=2.7e-20 Score=192.90 Aligned_cols=221 Identities=17% Similarity=0.192 Sum_probs=187.6
Q ss_pred CceEEEEecCCCCccceEEeCCCcceeeeeHHHHHHHHHhCCCC-cceEEeeCCCCCCCCChhHHHHHHhcCeeeEEeec
Q 003093 375 GRHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYA-VPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGD 453 (848)
Q Consensus 375 g~~lrv~v~~~~~~~p~~~~~~~~~~~G~~~dll~~i~~~l~~~-~~~~~~~~~~~~~n~s~~~~i~~l~~g~~D~~~~~ 453 (848)
.++|+||+. +|+||.+.+.++++.|+++|+++++++++|++ +++...+ |.+++.++.+|++|+++++
T Consensus 12 ~~~l~v~~~---~~~P~~~~~~~g~~~G~~~dl~~~i~~~~g~~~~~~~~~~---------~~~~~~~l~~g~~D~~~~~ 79 (257)
T 2q88_A 12 QGFARIAIA---NEPPFTAVGADGKVSGAAPDVAREIFKRLGVADVVASISE---------YGAMIPGLQAGRHDAITAG 79 (257)
T ss_dssp HTEEEEEEC---CCTTTCEECTTCCEESHHHHHHHHHHHHTTCCEEEEEECC---------GGGHHHHHHTTSCSEECSC
T ss_pred CCeEEEEcC---CCCCeeEECCCCCcccccHHHHHHHHHHcCCCeeeEEeCC---------HHHHHHHHHCCCcCEEEec
Confidence 367999986 67888876667899999999999999999998 7776543 9999999999999999977
Q ss_pred eeeecCceeeeeecccccccceEEEEeccCCCCCcccccccCchhhHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCc
Q 003093 454 IAIITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKRQV 533 (848)
Q Consensus 454 ~~~t~~R~~~~dfs~p~~~~~~~~v~~~~~~~~~~~~fl~PF~~~vW~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 533 (848)
+..+++|.+.++||.||+..+.++++++..+
T Consensus 80 ~~~t~~r~~~~~~s~p~~~~~~~~~~~~~~~------------------------------------------------- 110 (257)
T 2q88_A 80 LFMKPERCAAVAYSQPILCDAEAFALKKGNP------------------------------------------------- 110 (257)
T ss_dssp CBCCHHHHTTSEECSCCCEECEEEEEETTCT-------------------------------------------------
T ss_pred ccCCHHHHhccccccchhcCceEEEEECCCc-------------------------------------------------
Confidence 9999999999999999999999999987650
Q ss_pred chhhhhHHHHhhhcCccccccchhHHHHHHHHhhhhhhhccccceeeeeeeeccccCCCCChHHhhcC-CCCeeEEeCch
Q 003093 534 VTIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSS-NYPIGYQVNSF 612 (848)
Q Consensus 534 ~~~~~~~~~~l~~~~~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~s-~~~i~~~~~s~ 612 (848)
..+++++||..+ |++||+..|+.
T Consensus 111 --------------------------------------------------------~~i~~~~dL~~~~g~~i~~~~g~~ 134 (257)
T 2q88_A 111 --------------------------------------------------------LGLKSYKDIADNPDAKIGAPGGGT 134 (257)
T ss_dssp --------------------------------------------------------TCCCBHHHHHHCTTCCEEECTTSH
T ss_pred --------------------------------------------------------cCCCCHHHHhccCCceEEEECCcc
Confidence 258899999865 78899999998
Q ss_pred HHHHHHhhhCCCccCcccCCCHHHHHHHhhcCCCCCceEEEEccHHHHHHHHhcCC--cEEEeCCccc--cCCceeeecC
Q 003093 613 ARNYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRC--EFSIVGQVFT--KNGWGFAFPR 688 (848)
Q Consensus 613 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~--~l~~~~~~~~--~~~~~~~~~k 688 (848)
...++.+ .+.+..+++.+++.++.+++|.+ |++|+++.+...+.+++++.. .+..+..... ..+++++++|
T Consensus 135 ~~~~l~~-~~~~~~~~~~~~~~~~~~~~l~~----grvDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 209 (257)
T 2q88_A 135 EEKLALE-AGVPRDRVIVVPDGQSGLKMLQD----GRIDVYSLPVLSINDLVSKANDPNVEVLAPVEGAPVYCDGAAFRK 209 (257)
T ss_dssp HHHHHHH-TTCCGGGEEECSSHHHHHHHHHH----TSCSEEEEEHHHHHHHHHHHCCTTEEEECSCBTCCCEEBCCEECG
T ss_pred cHHHHHh-cCCCCceEEEcCCHHHHHHHHHc----CCCcEEEcCHHHHHHHHHhCCCcceeeecccCCccccceEEEEcC
Confidence 8888843 44555678889999999999999 999999999999998887643 4655543211 2457889999
Q ss_pred CCC-chHHHHHHHHhhhccCchHHHHHhhc
Q 003093 689 DSP-LAVDISTAILKLSENGDLQRIHDKWL 717 (848)
Q Consensus 689 ~sp-l~~~in~~i~~l~e~G~~~~~~~kw~ 717 (848)
+++ +.+.||++|.++.++|.+++|.+||.
T Consensus 210 ~~~~l~~~l~~~l~~~~~~g~~~~i~~k~~ 239 (257)
T 2q88_A 210 GDEALRDAFDVELAKLKESGEFAKIIEPYG 239 (257)
T ss_dssp GGHHHHHHHHHHHHHHHHHTHHHHHHGGGT
T ss_pred CCHHHHHHHHHHHHHHHhCCcHHHHHHHhC
Confidence 977 99999999999999999999999993
No 64
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=99.83 E-value=2.4e-20 Score=189.23 Aligned_cols=218 Identities=26% Similarity=0.384 Sum_probs=184.5
Q ss_pred ceEEEEecCCCCccceEEeCCCcceeeeeHHHHHHHHHhCCCCcceEEeeCCCCCCCCChhHHHHHHhcCeeeEEeecee
Q 003093 376 RHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDIA 455 (848)
Q Consensus 376 ~~lrv~v~~~~~~~p~~~~~~~~~~~G~~~dll~~i~~~l~~~~~~~~~~~~~~~~n~s~~~~i~~l~~g~~D~~~~~~~ 455 (848)
++|+||+. +++||.+. .++++.|+++|+++.+++++|++++++..+ +|.+++.+|.+|++|++++++.
T Consensus 3 ~~l~v~~~---~~~P~~~~-~~g~~~G~~~dl~~~~~~~~g~~~~~~~~~--------~~~~~~~~l~~g~~D~~~~~~~ 70 (228)
T 2pyy_A 3 QPLLVATR---VIPPFVLS-NKGELSGFSIDLWRSIATQIGIESKLIEYS--------SVPELISAIKDNKVNLGIAAIS 70 (228)
T ss_dssp -CEEEEEC---CBTTTBBC-C---CBSHHHHHHHHHHHHHTCCEEEEECS--------SHHHHHHHHHTTSCSEECSSCB
T ss_pred ceEEEEec---CCCCeEEe-cCCceEEEeHHHHHHHHHHhCCcEEEEEcC--------CHHHHHHHHHCCCcCEEEeccc
Confidence 57999987 47888775 678899999999999999999997766653 5999999999999999998888
Q ss_pred eecCceeeeeecccccccceEEEEeccCCCCCcccccccCchhhHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCcch
Q 003093 456 IITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKRQVVT 535 (848)
Q Consensus 456 ~t~~R~~~~dfs~p~~~~~~~~v~~~~~~~~~~~~fl~PF~~~vW~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 535 (848)
.+++|.+.+.|+.||+..+.++++++..+.
T Consensus 71 ~~~~r~~~~~~~~p~~~~~~~~~~~~~~~~-------------------------------------------------- 100 (228)
T 2pyy_A 71 ITAEREQNFDFSLPIFASGLQIMVRNLESG-------------------------------------------------- 100 (228)
T ss_dssp CCHHHHHHSEECSCSEEEEEEEEEEC------------------------------------------------------
T ss_pred cCHHHHccceecccchhcceEEEEECCccc--------------------------------------------------
Confidence 999999999999999999999999876510
Q ss_pred hhhhHHHHhhhcCccccccchhHHHHHHHHhhhhhhhccccceeeeeeeeccccCCCCChHHhhcCCCCeeEEeCchHHH
Q 003093 536 IFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVNSFARN 615 (848)
Q Consensus 536 ~~~~~~~~l~~~~~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~s~~~i~~~~~s~~~~ 615 (848)
..++++++||. |+++|+..|+....
T Consensus 101 -----------------------------------------------------~~~~~~~~dL~--g~~i~~~~g~~~~~ 125 (228)
T 2pyy_A 101 -----------------------------------------------------TGDIRSIDDLP--GKVVATTAGSTAAT 125 (228)
T ss_dssp ------------------------------------------------------CCCCSGGGCT--TCEEEEETTSHHHH
T ss_pred -----------------------------------------------------cCCcCCHHHcC--CCeEEEEcCcHHHH
Confidence 13688999997 88999999998888
Q ss_pred HHHhhhCCCccCcccCCCHHHHHHHhhcCCCCCceEEEEccHHHHHHHHhcCC--cEEEeCCccccCCceeeecCCCCch
Q 003093 616 YLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRC--EFSIVGQVFTKNGWGFAFPRDSPLA 693 (848)
Q Consensus 616 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~k~spl~ 693 (848)
++.+ . ..+++.+.+.++.+++|.+ |++|+++.+...+.+++++.. ++.+++..+....++++++|++++.
T Consensus 126 ~l~~-~---~~~~~~~~~~~~~~~~l~~----g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 197 (228)
T 2pyy_A 126 YLRE-H---HISVLEVPKIEEAYKALQT----KKADAVVFDAPVLLFYAANEGKGKVEIVGSILREESYGIILPNNSPYR 197 (228)
T ss_dssp HHHH-T---TCEEEEESSHHHHHHHHHT----TSSSEEEEEHHHHHHHHHTTTTTTEEEEEEEEEEEEECCEECTTCTTH
T ss_pred HHHH-c---CCceEecCCHHHHHHHHHc----CCCCEEEecHHHHHHHHHhCCCCcEEEecccccceeEEEEEeCChHHH
Confidence 8854 2 2356778899999999999 999999999999988887754 6887777666778999999999999
Q ss_pred HHHHHHHHhhhccCchHHHHHhhcc
Q 003093 694 VDISTAILKLSENGDLQRIHDKWLL 718 (848)
Q Consensus 694 ~~in~~i~~l~e~G~~~~~~~kw~~ 718 (848)
+.+|++|.+|.++|.+++|.+||+.
T Consensus 198 ~~~~~~l~~l~~~g~~~~i~~k~~~ 222 (228)
T 2pyy_A 198 KPINQALLNLKENGTYQSLYDKWFD 222 (228)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHcC
Confidence 9999999999999999999999987
No 65
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis}
Probab=99.83 E-value=1.8e-20 Score=196.14 Aligned_cols=220 Identities=15% Similarity=0.239 Sum_probs=184.2
Q ss_pred CceEEEEecCCCCccceEEeCCC---cceeeeeHHHHHHHHHhCCCCcceEEeeCCCCCCCCChhHHHHHHhcCeeeEEe
Q 003093 375 GRHLRIGVPNRVSFREFVSVKGS---EMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAV 451 (848)
Q Consensus 375 g~~lrv~v~~~~~~~p~~~~~~~---~~~~G~~~dll~~i~~~l~~~~~~~~~~~~~~~~n~s~~~~i~~l~~g~~D~~~ 451 (848)
.++|+||+. ++|+||.+.+.+ +.+.|+++|+++++++++|++++++.. +|.+++.+|.+|++|+++
T Consensus 20 ~~~l~v~~~--~~~pP~~~~~~~~~~g~~~G~~~dl~~~i~~~~g~~v~~~~~---------~~~~~~~~l~~G~~D~~~ 88 (271)
T 2iee_A 20 KGKIVVATS--GTLYPTSYHDTDSGSDKLTGYEVEVVREAAKRLGLKVEFKEM---------GIDGMLTAVNSGQVDAAA 88 (271)
T ss_dssp HTEEEEEEC--SCBTTTBEEETTTTCCEEECHHHHHHHHHHHHTTCEEEEEEC---------CSTTHHHHHHHTSSSEEC
T ss_pred CCeEEEEEC--CCCCCeeEeCCCCCCCCceeeHHHHHHHHHHHcCCeEEEEEC---------CHHHHHHHHHCCCcCEEE
Confidence 468999987 378888875445 899999999999999999999766654 399999999999999999
Q ss_pred eceeeecCceeeeeecccccccceEEEEeccCCCCCcccccccCchhhHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCC
Q 003093 452 GDIAIITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKR 531 (848)
Q Consensus 452 ~~~~~t~~R~~~~dfs~p~~~~~~~~v~~~~~~~~~~~~fl~PF~~~vW~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 531 (848)
++++.+++|.+.++||.||+..+.++++++...
T Consensus 89 ~~~~~t~~r~~~~~fs~p~~~~~~~l~~~~~~~----------------------------------------------- 121 (271)
T 2iee_A 89 NDIDVTKDREEKFAFSTPYKYSYGTAIVRKDDL----------------------------------------------- 121 (271)
T ss_dssp SSCBCCHHHHTTEEECCCSEEEEEEEEECTTTG-----------------------------------------------
T ss_pred eCCcCChhhccceEEeecceeCCeEEEEECCCC-----------------------------------------------
Confidence 888999999999999999999999999987650
Q ss_pred CcchhhhhHHHHhhhcCccccccchhHHHHHHHHhhhhhhhccccceeeeeeeeccccCCCCChHHhhcCCCCeeEEeCc
Q 003093 532 QVVTIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVNS 611 (848)
Q Consensus 532 ~~~~~~~~~~~~l~~~~~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~s~~~i~~~~~s 611 (848)
..+++++||. |++||+..|+
T Consensus 122 ----------------------------------------------------------~~i~~~~dL~--g~~i~v~~g~ 141 (271)
T 2iee_A 122 ----------------------------------------------------------SGIKTLKDLK--GKKAAGAATT 141 (271)
T ss_dssp ----------------------------------------------------------GGCSSGGGGT--TCEEESCTTS
T ss_pred ----------------------------------------------------------CCCCCHHHhC--CCEEEEeCCc
Confidence 2688999997 8999999999
Q ss_pred hHHHHHHhhhCCCccCcccCCCHHHH--HHHhhcCCCCCceEEEEccHHHHHHHHh-cC--CcEEEe-CCccccCCceee
Q 003093 612 FARNYLVDELNIDESRLVPLNSPEEY--AKALKDGPHKGGVAAVVDDRAYAELFLS-TR--CEFSIV-GQVFTKNGWGFA 685 (848)
Q Consensus 612 ~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~a~~~~~~~~~~~~~-~~--~~l~~~-~~~~~~~~~~~~ 685 (848)
....++.+ .+ .+++.+.+.++. +++|.+ |++| ++.+...+.+++. +. .++.++ +..+...+++++
T Consensus 142 ~~~~~l~~-~~---~~~~~~~~~~~~~l~~~L~~----GrvD-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (271)
T 2iee_A 142 VYMEVARK-YG---AKEVIYDNATNEQYLKDVAN----GRTD-VILNDYYLQTLALAAFPDLNITIHPDIKYMPNKQALV 212 (271)
T ss_dssp HHHHHHHH-TT---CEEEECSSCCHHHHHHHHHH----TSSC-EEEEEHHHHHHHHHHCTTSSCEECSSCCEEEEEECCE
T ss_pred cHHHHHHH-cC---CceEEeCChhhHHHHHHHHc----CCcc-EEeccHHHHHHHHHhCCCCceEEecCCCcccceEEEE
Confidence 88888843 32 267788888888 999999 8999 5555555544444 43 368887 667777889999
Q ss_pred ecCCCC-chHHHHHHHHhhhccCchHHHHHhhcc-cCC
Q 003093 686 FPRDSP-LAVDISTAILKLSENGDLQRIHDKWLL-RSA 721 (848)
Q Consensus 686 ~~k~sp-l~~~in~~i~~l~e~G~~~~~~~kw~~-~~~ 721 (848)
++|++| +.+.||++|.+|.++|.+++|.+||+. ...
T Consensus 213 ~~k~~~~l~~~ln~al~~l~~~G~~~~i~~k~~~~~~~ 250 (271)
T 2iee_A 213 MKKSNAALQKKMNEALKEMSKDGSLTKLSKQFFNKADV 250 (271)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHTHHHHHHHHHTTTCCT
T ss_pred EcCCCHHHHHHHHHHHHHHHHCCCHHHHHHHhCCcccc
Confidence 999988 999999999999999999999999998 443
No 66
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=99.82 E-value=6.2e-20 Score=191.36 Aligned_cols=217 Identities=19% Similarity=0.259 Sum_probs=193.0
Q ss_pred CceEEEEecCCCCccceEEeCCCcceeeeeHHHHHHHHHhCCCCcceEEeeCCCCCCCCChhHHHHHHhcCeeeEEeece
Q 003093 375 GRHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDI 454 (848)
Q Consensus 375 g~~lrv~v~~~~~~~p~~~~~~~~~~~G~~~dll~~i~~~l~~~~~~~~~~~~~~~~n~s~~~~i~~l~~g~~D~~~~~~ 454 (848)
..+|+|++.. .++||.+.+.++++.|+++|+++.+++++|++++++.. +|.+++.++.+|++|++++++
T Consensus 30 ~~~l~v~~~~--~~~P~~~~~~~g~~~G~~~dl~~~i~~~~g~~~~~~~~---------~~~~~~~~l~~g~~D~~~~~~ 98 (268)
T 3qax_A 30 NRIWIVGTNA--TYPPFEYVDAQGEVVGFDIDLAKAISEKLGKQLEVREF---------AFDALILNLKKHRIDAILAGM 98 (268)
T ss_dssp -CEEEEEECS--CBTTTBEECTTSCEESHHHHHHHHHHHHHTCEEEEEEC---------CGGGHHHHHHHTSSSEECSCC
T ss_pred CCeEEEEECC--CCCCceEECCCCCEEEEEHHHHHHHHHHhCCeEEEEec---------CHHHHHHHHhCCCccEEeecC
Confidence 4689999864 67888886678899999999999999999988666553 499999999999999999889
Q ss_pred eeecCceeeeeeccccc--ccceEEEEeccCCCCCcccccccCchhhHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCC
Q 003093 455 AIITNRTKMADFTQPYI--ESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKRQ 532 (848)
Q Consensus 455 ~~t~~R~~~~dfs~p~~--~~~~~~v~~~~~~~~~~~~fl~PF~~~vW~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 532 (848)
..+++|.+.++| .||+ ..+.++++++..
T Consensus 99 ~~~~~r~~~~~~-~p~~~~~~~~~~~~~~~~------------------------------------------------- 128 (268)
T 3qax_A 99 SITPSRQKEIAL-LPYYGDEVQELMVVSKRS------------------------------------------------- 128 (268)
T ss_dssp BCCHHHHTTSEE-EEEECCCBCEEEEEEETT-------------------------------------------------
T ss_pred ccCHhHhcceee-ecceecccceEEEEECCC-------------------------------------------------
Confidence 999999999999 9999 999999998875
Q ss_pred cchhhhhHHHHhhhcCccccccchhHHHHHHHHhhhhhhhccccceeeeeeeeccccCCCCChHHhhcCCCCeeEEeCch
Q 003093 533 VVTIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVNSF 612 (848)
Q Consensus 533 ~~~~~~~~~~~l~~~~~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~s~~~i~~~~~s~ 612 (848)
.++++++||. |++||+..|+.
T Consensus 129 ---------------------------------------------------------~~i~~~~dL~--g~~i~~~~g~~ 149 (268)
T 3qax_A 129 ---------------------------------------------------------LETPVLPLTQ--YSSVAVQTGTY 149 (268)
T ss_dssp ---------------------------------------------------------SCSCCCCGGG--SSCEEEETTSH
T ss_pred ---------------------------------------------------------CCCCCHHHhC--CCEEEEecCcH
Confidence 5788999998 99999999998
Q ss_pred HHHHHHhhhCCCccCcccCCCHHHHHHHhhcCCCCCceEEEEccHHHHHHHHhcCCcEEEeCCccccCC----ceeeecC
Q 003093 613 ARNYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRCEFSIVGQVFTKNG----WGFAFPR 688 (848)
Q Consensus 613 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~k 688 (848)
...++.. .+..+++.+++.++.+++|.+ |++|+++.+...+.+++++...+.+++..+.... ++++++|
T Consensus 150 ~~~~l~~---~~~~~~~~~~~~~~~~~~l~~----G~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 222 (268)
T 3qax_A 150 QEHYLLS---QPGICVRSFDSTLEVIMEVRY----GKSPVAVLEPSVGRVVLKDFPNLVATRLELPPECWVLGCGLGVAK 222 (268)
T ss_dssp HHHHHHT---STTCCEEEESCHHHHHHHHHT----TSSSEEEECHHHHHHHGGGCTTEEEEEEECCGGGCBCCEEEEECT
T ss_pred HHHHHHh---CCCceEEecCCHHHHHHHHHc----CCCCEEEecHHHHHHHHHhCCCcEEecCccCcccccccEEEEEeC
Confidence 8888854 445677888999999999999 9999999999999999998877888877666666 9999999
Q ss_pred CCC-chHHHHHHHHhhhccCchHHHHHhhcc
Q 003093 689 DSP-LAVDISTAILKLSENGDLQRIHDKWLL 718 (848)
Q Consensus 689 ~sp-l~~~in~~i~~l~e~G~~~~~~~kw~~ 718 (848)
++| +.+.+|++|.++.++|.++++.+||+.
T Consensus 223 ~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~ 253 (268)
T 3qax_A 223 DRPEEIQTIQQAITDLKSEGVIQSLTKKWQL 253 (268)
T ss_dssp TCHHHHHHHHHHHHHHHHTTHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHHHCCcHHHHHHHHcC
Confidence 998 999999999999999999999999987
No 67
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Probab=99.82 E-value=9.8e-20 Score=190.55 Aligned_cols=219 Identities=21% Similarity=0.359 Sum_probs=189.4
Q ss_pred CCceEEEEecCCCCccceEEeCCCcceeeeeHHHHHHHHHhCCCCcceEEeeCCCCCCCCChhHHHHHHhcCeeeEEeec
Q 003093 374 NGRHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGD 453 (848)
Q Consensus 374 ~g~~lrv~v~~~~~~~p~~~~~~~~~~~G~~~dll~~i~~~l~~~~~~~~~~~~~~~~n~s~~~~i~~l~~g~~D~~~~~ 453 (848)
...+|+||+.. .|+||.+. .++++.|+++|+++.+++++|++++++.. .|.+++.+|.+|++|+++++
T Consensus 40 ~~~~l~v~~~~--~~~P~~~~-~~g~~~G~~~dl~~~i~~~~g~~v~~~~~---------~~~~~~~~l~~G~~D~~~~~ 107 (272)
T 2pvu_A 40 TKKKVVVGTDA--AFAPFEYM-QKGKIVGFDVDLLDAVMKAAGLDYELKNI---------GWDPLFASLQSKEVDMGISG 107 (272)
T ss_dssp CCCCEEEEECC--CBTTTBEE-ETTEEESHHHHHHHHHHHHHTCCEEEEEC---------CHHHHHHHHHHTSSSEECSS
T ss_pred cCCeEEEEECC--CCCCeEEe-cCCeEEEEHHHHHHHHHHHhCCceEEEEC---------CHHHHHHHHhCCCCCEEEeC
Confidence 45689999973 68888774 36889999999999999999999666554 39999999999999999988
Q ss_pred eeeecCceeeeeecccccccceEEEEeccCCCCCcccccccCchhhHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCc
Q 003093 454 IAIITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKRQV 533 (848)
Q Consensus 454 ~~~t~~R~~~~dfs~p~~~~~~~~v~~~~~~~~~~~~fl~PF~~~vW~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 533 (848)
+..+++|.+.+.|+.||+....++++++..
T Consensus 108 ~~~~~~r~~~~~~s~p~~~~~~~l~~~~~~-------------------------------------------------- 137 (272)
T 2pvu_A 108 ITITDERKQSYDFSDPYFEATQVILVKQGS-------------------------------------------------- 137 (272)
T ss_dssp CBCCHHHHTTEEECSCCEEECEEEEEETTC--------------------------------------------------
T ss_pred CcCCHHHHhcCccchhhhccceEEEEECCC--------------------------------------------------
Confidence 889999999999999999999999998765
Q ss_pred chhhhhHHHHhhhcCccccccchhHHHHHHHHhhhhhhhccccceeeeeeeeccccCCCCChHHhhcCCCCeeEEeCchH
Q 003093 534 VTIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVNSFA 613 (848)
Q Consensus 534 ~~~~~~~~~~l~~~~~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~s~~~i~~~~~s~~ 613 (848)
++++++||. |++||+..|+..
T Consensus 138 ---------------------------------------------------------~i~~~~dL~--g~~i~~~~g~~~ 158 (272)
T 2pvu_A 138 ---------------------------------------------------------PVKNALDLK--GKTIGVQNATTG 158 (272)
T ss_dssp ---------------------------------------------------------CCCSGGGGT--TSCEEEETTSHH
T ss_pred ---------------------------------------------------------CCCCHHHhC--CCeEEEEcCchH
Confidence 488999997 889999999988
Q ss_pred HHHHHhhhCCCccCcccCCCHHHHHHHhhcCCCCCceEEEEccHHHHHHHHhcCC--cEEEeCCcc--ccCCceeeecCC
Q 003093 614 RNYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRC--EFSIVGQVF--TKNGWGFAFPRD 689 (848)
Q Consensus 614 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~--~l~~~~~~~--~~~~~~~~~~k~ 689 (848)
..++.+..+ ...+++.+.+.++.+++|.+ |++|+++.+...+.+++++.. ++.+++... ....++++++|+
T Consensus 159 ~~~l~~~~~-~~~~i~~~~~~~~~~~~l~~----G~vDa~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~k~ 233 (272)
T 2pvu_A 159 QEAAEKLFG-KGPHIKKFETTVVAIMELLN----GGVDAVITDNAVANEYVKNNPNKKLQVIEDPKNFASEYYGMIFPKN 233 (272)
T ss_dssp HHHHHHHHC-SSTTEEEESSHHHHHHHHHT----TSCSEEEEEHHHHHHHHHHCGGGCEEEECCTTTSCCEEECCEEETT
T ss_pred HHHHHHhcC-CCCeEEEcCCHHHHHHHHHc----CCccEEEeCHHHHHHHHHhCCCCceEEeccccccCCceEEEEEeCC
Confidence 888865444 34567788999999999999 999999999999998888764 388887653 566789999999
Q ss_pred CCchHHHHHHHHhhhccCchHHHHHhhcc
Q 003093 690 SPLAVDISTAILKLSENGDLQRIHDKWLL 718 (848)
Q Consensus 690 spl~~~in~~i~~l~e~G~~~~~~~kw~~ 718 (848)
..+.+.||++|.++.++|.+++|.+||+.
T Consensus 234 ~~l~~~l~~~l~~l~~~g~~~~i~~k~~~ 262 (272)
T 2pvu_A 234 SELKAKVDEALKNVINSGKYTEIYKKWFG 262 (272)
T ss_dssp CTTHHHHHHHHHHHHHTTHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhCChHHHHHHHHcC
Confidence 44999999999999999999999999987
No 68
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae}
Probab=99.82 E-value=6e-20 Score=191.58 Aligned_cols=219 Identities=22% Similarity=0.339 Sum_probs=191.7
Q ss_pred ceEEEEecCCCCccceEE---eCCCcceeeeeHHHHHHHHHhCCCCcceEEeeCCCCCCCCChhHHHHHHhcCeeeEEee
Q 003093 376 RHLRIGVPNRVSFREFVS---VKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVG 452 (848)
Q Consensus 376 ~~lrv~v~~~~~~~p~~~---~~~~~~~~G~~~dll~~i~~~l~~~~~~~~~~~~~~~~n~s~~~~i~~l~~g~~D~~~~ 452 (848)
++|+|++. +.|+||.+ .++++.+.|+++|+++.+++++|++++++.. +|.+++.++.+|++|++++
T Consensus 39 ~~l~v~~~--~~~~P~~~~~~~~~~g~~~G~~~dl~~~~~~~~g~~~~~~~~---------~~~~~~~~l~~g~~D~~~~ 107 (269)
T 4i62_A 39 GKLVVALN--PDFAPFEYQKVVDGKNQIVGSDIELAKAIATELGVELELSPM---------SFDNVLASVQSGKADLAIS 107 (269)
T ss_dssp TEEEEEEC--SCBTTTBEEEEETTEEEEESHHHHHHHHHHHHHTCEEEEEEC---------CHHHHHHHHHTTSCSEECS
T ss_pred CeEEEEec--CCCCCceeecccCCCCcEeeecHHHHHHHHHHHCCceEEEEc---------CHHHHHHHHhCCCccEEec
Confidence 58999987 36888877 6788999999999999999999998666553 4999999999999999998
Q ss_pred ceeeecCceeeeeecccccccceEEEEeccCCCCCcccccccCchhhHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCC
Q 003093 453 DIAIITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKRQ 532 (848)
Q Consensus 453 ~~~~t~~R~~~~dfs~p~~~~~~~~v~~~~~~~~~~~~fl~PF~~~vW~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 532 (848)
++..+++|.+.+.|+.||+....++++++..
T Consensus 108 ~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~------------------------------------------------- 138 (269)
T 4i62_A 108 GVSKTDERSKVFDFSTPYYTAKNKLIVKKSD------------------------------------------------- 138 (269)
T ss_dssp SCBCCHHHHTTEEECSCCEECCEEEEEEGGG-------------------------------------------------
T ss_pred CCcCCHhHhhceecccchhhcceEEEEECCc-------------------------------------------------
Confidence 8999999999999999999999999998764
Q ss_pred cchhhhhHHHHhhhcCccccccchhHHHHHHHHhhhhhhhccccceeeeeeeeccccCCCCChHHhhcCCCCeeEEeCch
Q 003093 533 VVTIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVNSF 612 (848)
Q Consensus 533 ~~~~~~~~~~~l~~~~~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~s~~~i~~~~~s~ 612 (848)
..++++++||. |++||+..|+.
T Consensus 139 --------------------------------------------------------~~~i~~~~dL~--g~~i~~~~g~~ 160 (269)
T 4i62_A 139 --------------------------------------------------------LATYQSVNDLA--QKKVGAQKGSI 160 (269)
T ss_dssp --------------------------------------------------------TTTCSSGGGGC---CEEEEETTSH
T ss_pred --------------------------------------------------------cccccCHHHhC--CCeEEEecCch
Confidence 14789999998 89999999998
Q ss_pred HHHHHHhhhCCCccCcccCCCHHHHHHHhhcCCCCCceEEEEccHHHHHHHHhcCCcEEEeCCccc---cCCceeeecCC
Q 003093 613 ARNYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRCEFSIVGQVFT---KNGWGFAFPRD 689 (848)
Q Consensus 613 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~k~ 689 (848)
...++.+. .+..+++.+++.++.+++|.+ |++|+++.+.+.+.++++++..+.+....+. ..+++++++|+
T Consensus 161 ~~~~l~~~--~~~~~~~~~~~~~~~~~~l~~----g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (269)
T 4i62_A 161 QETMAKDL--LQNSSLVSLPKNGNLITDLKS----GQVDAVIFEEPVAKGFVENNPDLAIADLNFEKEQDDSYAVAMKKD 234 (269)
T ss_dssp HHHHHHHH--CTTSEEEEESCHHHHHHHHHT----TSSSEEEEEHHHHHHHHHHCTTEEECSCCCCC-CCCEECCEEESS
T ss_pred HHHHHHHh--CCCCcEEecCCHHHHHHHHHc----CCCCEEEeChHHHHHHHHhCCCCeEEeeccCCCcccceEEEEeCC
Confidence 88888553 334677888999999999999 9999999999999999988777777655443 66789999999
Q ss_pred CC-chHHHHHHHHhhhccCchHHHHHhhcc
Q 003093 690 SP-LAVDISTAILKLSENGDLQRIHDKWLL 718 (848)
Q Consensus 690 sp-l~~~in~~i~~l~e~G~~~~~~~kw~~ 718 (848)
+| +.+.||++|.++.++|.++++.+||+.
T Consensus 235 ~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~ 264 (269)
T 4i62_A 235 SKELKEAVDKTIQKLKESGELDKLIEDAFK 264 (269)
T ss_dssp CHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCChHHHHHHHHhC
Confidence 98 999999999999999999999999987
No 69
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1
Probab=99.81 E-value=1.1e-19 Score=192.35 Aligned_cols=217 Identities=18% Similarity=0.246 Sum_probs=190.9
Q ss_pred ceEEEEecCCCCccceEEeCCCcceeeeeHHHHHHHHHhC---CCCcceEEeeCCCCCCCCChhHHHHHHhcCeeeEEee
Q 003093 376 RHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLL---PYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVG 452 (848)
Q Consensus 376 ~~lrv~v~~~~~~~p~~~~~~~~~~~G~~~dll~~i~~~l---~~~~~~~~~~~~~~~~n~s~~~~i~~l~~g~~D~~~~ 452 (848)
.+|+|++.. +++||.+.+.++...|+++|+++.+++++ |++++++..+ |.+++.++.+|++|++++
T Consensus 44 ~~l~v~~~~--~~~P~~~~~~~g~~~G~~~dl~~~i~~~~~~~g~~~~~~~~~---------~~~~~~~l~~G~~D~~~~ 112 (292)
T 1xt8_A 44 GVVRIGVFG--DKPPFGYVDEKGNNQGYDIALAKRIAKELFGDENKVQFVLVE---------AANRVEFLKSNKVDIILA 112 (292)
T ss_dssp SSEEEEECS--EETTTEEECTTSCEESHHHHHHHHHHHHHHSCTTCEEEEECC---------GGGHHHHHHTTSCSEECS
T ss_pred CeEEEEECC--CCCCeeEECCCCCEeeEhHHHHHHHHHHhccCCceEEEEEcC---------HHHHHHHHhCCCeeEEee
Confidence 579999863 68899886677899999999999999999 9996666543 899999999999999988
Q ss_pred ceeeecCceeeeeecccccccceEEEEeccCCCCCcccccccCchhhHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCC
Q 003093 453 DIAIITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKRQ 532 (848)
Q Consensus 453 ~~~~t~~R~~~~dfs~p~~~~~~~~v~~~~~~~~~~~~fl~PF~~~vW~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 532 (848)
++..+++|.+.+.|+.||+..+.++++++..
T Consensus 113 ~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~------------------------------------------------- 143 (292)
T 1xt8_A 113 NFTQTPQRAEQVDFCSPYMKVALGVAVPKDS------------------------------------------------- 143 (292)
T ss_dssp SCBCCHHHHTTEEECCCCEEEEEEEEEETTC-------------------------------------------------
T ss_pred cCCCCcchhcceeeeccceecceEEEEECCC-------------------------------------------------
Confidence 8889999999999999999999999998653
Q ss_pred cchhhhhHHHHhhhcCccccccchhHHHHHHHHhhhhhhhccccceeeeeeeeccccCCCCChHHhhcCCCCeeEEeCch
Q 003093 533 VVTIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVNSF 612 (848)
Q Consensus 533 ~~~~~~~~~~~l~~~~~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~s~~~i~~~~~s~ 612 (848)
++++++||. |++||+..|+.
T Consensus 144 ----------------------------------------------------------~i~~~~dL~--g~~i~~~~g~~ 163 (292)
T 1xt8_A 144 ----------------------------------------------------------NITSVEDLK--DKTLLLNKGTT 163 (292)
T ss_dssp ----------------------------------------------------------CCCSSGGGT--TSEEEEETTSH
T ss_pred ----------------------------------------------------------CCCCHHHhC--CCEEEEeCCCc
Confidence 678899998 88999999998
Q ss_pred HHHHHHhhhCCCccCcccCCCHHHHHHHhhcCCCCCceEEEEccHHHHHHHHhcCCcEEEeCCccccCCc-eeeecCCCC
Q 003093 613 ARNYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRCEFSIVGQVFTKNGW-GFAFPRDSP 691 (848)
Q Consensus 613 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~k~sp 691 (848)
...++.+.. +..+++.+.+.++.+++|.+ |++|+++.+...+.+++++..++.+++..+...++ +++++|++|
T Consensus 164 ~~~~l~~~~--~~~~~~~~~~~~~~~~~L~~----G~vDa~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~~~ 237 (292)
T 1xt8_A 164 ADAYFTQNY--PNIKTLKYDQNTETFAALMD----KRGDALSHDNTLLFAWVKDHPDFKMGIKELGNKDVIAPAVKKGDK 237 (292)
T ss_dssp HHHHHHHHC--TTSEEEEESSHHHHHHHHHT----TSSSEEEEEHHHHHHHHHHCTTEEEEEEEEEEEEEECCEEETTCH
T ss_pred HHHHHHHhC--CCceEEEcCCHHHHHHHHHc----CCccEEEecHHHHHHHHHhCCCeEEcccccccCceeEEEEeCCCH
Confidence 888885432 34567788999999999999 99999999999999998887678888776667777 999999998
Q ss_pred -chHHHHHHHHhhhccCchHHHHHhhcc
Q 003093 692 -LAVDISTAILKLSENGDLQRIHDKWLL 718 (848)
Q Consensus 692 -l~~~in~~i~~l~e~G~~~~~~~kw~~ 718 (848)
+.+.+|++|.++.++|.+++|.+||+.
T Consensus 238 ~l~~~l~~~l~~l~~~g~~~~i~~k~~~ 265 (292)
T 1xt8_A 238 ELKEFIDNLIIKLGQEQFFHKAYDETLK 265 (292)
T ss_dssp HHHHHHHHHHHHHHTTTHHHHHHHHHTG
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHhcC
Confidence 999999999999999999999999988
No 70
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=99.81 E-value=1.4e-19 Score=191.26 Aligned_cols=217 Identities=23% Similarity=0.333 Sum_probs=191.3
Q ss_pred ceEEEEecCCCCccceEEeCCCcceeeeeHHHHHHHHHhC---CCCcceEEeeCCCCCCCCChhHHHHHHhcCeeeEEee
Q 003093 376 RHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLL---PYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVG 452 (848)
Q Consensus 376 ~~lrv~v~~~~~~~p~~~~~~~~~~~G~~~dll~~i~~~l---~~~~~~~~~~~~~~~~n~s~~~~i~~l~~g~~D~~~~ 452 (848)
++||||+.. +|+||.+.+.++.+.|+.+|+++.+++++ |++++++.. .|.+++.+|.+|++|++++
T Consensus 55 ~~l~vg~~~--~~~P~~~~~~~g~~~G~~~dl~~~i~~~~~~~g~~v~~~~~---------~~~~~~~~l~~G~~D~~~~ 123 (291)
T 2yjp_A 55 GVIRIGVFG--DKPPFGYVDANGKNQGFDVEIAKDLAKDLLGSPDKVEFVLT---------EAANRVEYVRSGKVDLILA 123 (291)
T ss_dssp TCEEEEECS--EETTTEEECTTSCEESHHHHHHHHHHHHHHSCGGGEEEEEC---------CGGGHHHHHHTTSCSEECS
T ss_pred CeEEEEEcC--CCCCceEECCCCCEeehHHHHHHHHHHHhccCCceEEEEEc---------cHHHHHHHHhCCCeeEEEe
Confidence 579999863 68899886678899999999999999999 998666554 3899999999999999998
Q ss_pred ceeeecCceeeeeecccccccceEEEEeccCCCCCcccccccCchhhHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCC
Q 003093 453 DIAIITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKRQ 532 (848)
Q Consensus 453 ~~~~t~~R~~~~dfs~p~~~~~~~~v~~~~~~~~~~~~fl~PF~~~vW~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 532 (848)
++..+.+|.+.++|+.||...+.++++++..
T Consensus 124 ~~~~~~~r~~~~~~~~p~~~~~~~l~~~~~~------------------------------------------------- 154 (291)
T 2yjp_A 124 NFTQTPERAEAVDFADPYMKVALGVVSPKNK------------------------------------------------- 154 (291)
T ss_dssp SCBCCHHHHTTEEECCCCEEECEEEEEETTS-------------------------------------------------
T ss_pred CCCCChHHHccceeccCeeecceEEEEeCCC-------------------------------------------------
Confidence 8889999999999999999999999998654
Q ss_pred cchhhhhHHHHhhhcCccccccchhHHHHHHHHhhhhhhhccccceeeeeeeeccccCCCCChHHhhcCCCCeeEEeCch
Q 003093 533 VVTIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVNSF 612 (848)
Q Consensus 533 ~~~~~~~~~~~l~~~~~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~s~~~i~~~~~s~ 612 (848)
+|++++||. |++||+..|+.
T Consensus 155 ----------------------------------------------------------~i~sl~dL~--gk~v~~~~g~~ 174 (291)
T 2yjp_A 155 ----------------------------------------------------------PITDMAQLK--DQTLLVNKGTT 174 (291)
T ss_dssp ----------------------------------------------------------CCCSGGGGT--TSEEEEETTSH
T ss_pred ----------------------------------------------------------CCCCHHHhC--CCEEEEecCCc
Confidence 688999997 89999999998
Q ss_pred HHHHHHhhhCCCccCcccCCCHHHHHHHhhcCCCCCceEEEEccHHHHHHHHhcCCcEEEeCCccccCCc-eeeecCCCC
Q 003093 613 ARNYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRCEFSIVGQVFTKNGW-GFAFPRDSP 691 (848)
Q Consensus 613 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~k~sp 691 (848)
...++.+.. +..+++.+.+.++.+++|.+ |++|+++.+.+.+.+++++...+.+++..+...++ +++++|++|
T Consensus 175 ~~~~l~~~~--~~~~~~~~~~~~~~~~~l~~----G~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 248 (291)
T 2yjp_A 175 ADAFFTKSH--PEVKLLKFDQNTETFDALKD----GRGVALAHDNALLWAWAKENPNFEVAIGNLGPAEFIAPAVQKGNA 248 (291)
T ss_dssp HHHHHHHHC--TTSEEEEESSHHHHHHHHHT----TSSSEEEEEHHHHHHHHHHCTTEEEEECCSSSCEEECCEEETTCH
T ss_pred HHHHHHHhC--CCceEEEeCCHHHHHHHHHc----CCccEEEecHHHHHHHHHhCCCeEEcCCcccCCcceEEEEeCCCH
Confidence 888885532 34567788899999999999 99999999999999988887778888777777777 999999998
Q ss_pred -chHHHHHHHHhhhccCchHHHHHhhcc
Q 003093 692 -LAVDISTAILKLSENGDLQRIHDKWLL 718 (848)
Q Consensus 692 -l~~~in~~i~~l~e~G~~~~~~~kw~~ 718 (848)
+.+.||++|.++.++|.+++|.+||+.
T Consensus 249 ~l~~~l~~al~~l~~~g~~~~i~~k~~~ 276 (291)
T 2yjp_A 249 DLLNWVNGEIAAMKKDGRLKAAYEKTLL 276 (291)
T ss_dssp HHHHHHHHHHHHHHHHSHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHhCChHHHHHHHhcc
Confidence 999999999999999999999999987
No 71
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*
Probab=99.81 E-value=1.9e-19 Score=189.99 Aligned_cols=221 Identities=19% Similarity=0.285 Sum_probs=188.7
Q ss_pred CceEEEEecCCCCccceEEeCCCcceeeeeHHHHHHHHHh----CC---CCcceEEeeCCCCCCCCChhHHHHHHhcCee
Q 003093 375 GRHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINL----LP---YAVPYKLIPFGDGHNNPSCTELVRLITAGVY 447 (848)
Q Consensus 375 g~~lrv~v~~~~~~~p~~~~~~~~~~~G~~~dll~~i~~~----l~---~~~~~~~~~~~~~~~n~s~~~~i~~l~~g~~ 447 (848)
.++||||+.. .|+||.+.+.++++.|+++|+++++++. +| ++ +++++ ..|.+++.+|.+|++
T Consensus 16 ~~~l~v~~~~--~~~P~~~~~~~g~~~G~~~dl~~~ia~~l~~~~G~~~~~--v~~~~-------~~~~~~~~~l~~g~~ 84 (287)
T 2vha_A 16 NGVIVVGHRE--SSVPFSYYDNQQKVVGYSQDYSNAIVEAVKKKLNKPDLQ--VKLIP-------ITSQNRIPLLQNGTF 84 (287)
T ss_dssp HTEEEEEECS--EETTTEEECSSSCEESHHHHHHHHHHHHHHHHTTCTTCE--EEEEE-------CCTTTHHHHHHTTSC
T ss_pred CCeEEEEEcC--CCCCceEECCCCCcccccHHHHHHHHHHHHHhcCCCCce--EEEEE-------CCHHHHHHHHHCCCe
Confidence 3679999964 6889988666789999999999999976 56 56 44444 248899999999999
Q ss_pred eEEeeceeeecCceeeeeecccccccceEEEEeccCCCCCcccccccCchhhHHHHHHHHHHHHHHhhhhhcccCCCCCC
Q 003093 448 DAAVGDIAIITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRG 527 (848)
Q Consensus 448 D~~~~~~~~t~~R~~~~dfs~p~~~~~~~~v~~~~~~~~~~~~fl~PF~~~vW~~~~~~~~~~~~v~~~~~~~~~~~~~~ 527 (848)
|+++++++.+++|.+.++||.||+..+.++++++..
T Consensus 85 D~~~~~~~~t~~r~~~~~~s~p~~~~~~~l~~~~~~-------------------------------------------- 120 (287)
T 2vha_A 85 DFECGSTTNNVERQKQAAFSDTIFVVGTRLLTKKGG-------------------------------------------- 120 (287)
T ss_dssp SEECSSCBCCHHHHTTCEEEEEEEEEEEEEEEETTS--------------------------------------------
T ss_pred eEEeccccCCcchhhcccccceeeecceEEEEECCC--------------------------------------------
Confidence 999988999999999999999999999999998664
Q ss_pred CCCCCcchhhhhHHHHhhhcCccccccchhHHHHHHHHhhhhhhhccccceeeeeeeeccccCCCCChHHhhcCCCCeeE
Q 003093 528 PPKRQVVTIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGY 607 (848)
Q Consensus 528 ~~~~~~~~~~~~~~~~l~~~~~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~s~~~i~~ 607 (848)
++++++||. |++||+
T Consensus 121 ---------------------------------------------------------------~i~sl~dL~--g~~v~~ 135 (287)
T 2vha_A 121 ---------------------------------------------------------------DIKDFADLK--GKAVVV 135 (287)
T ss_dssp ---------------------------------------------------------------SCCSGGGGT--TCEEEE
T ss_pred ---------------------------------------------------------------CCCCHHHcC--CCEEEE
Confidence 578999998 889999
Q ss_pred EeCchHHHHHHhhhC--CCccCcccCCCHHHHHHHhhcCCCCCceEEEEccHHHHHHHHhcC---CcEEEeCCccccCCc
Q 003093 608 QVNSFARNYLVDELN--IDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTR---CEFSIVGQVFTKNGW 682 (848)
Q Consensus 608 ~~~s~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~ 682 (848)
..|+....++.+... ....+++.+.+.++.+++|.+ |++|+++.+...+.+++++. .++.+++..+...++
T Consensus 136 ~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~----G~vDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (287)
T 2vha_A 136 TSGTTSEVLLNKLNEEQKMNMRIISAKDHGDSFRTLES----GRAVAFMMDDALLAGERAKAKKPDNWDIVGKPQSQEAY 211 (287)
T ss_dssp ETTSHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHT----TSCSEEEEEHHHHHHHHTTSSSGGGEEEESCCSCEEEE
T ss_pred eCCCcHHHHHHHHhhccCCCceEEEcCCHHHHHHHHHc----CCeeEEEeChHHHHHHHHhCCCCCceEecCCccccCce
Confidence 999988777754321 123567788999999999999 99999999999999888864 368888877777889
Q ss_pred eeeecCCCC-chHHHHHHHHhhhccCchHHHHHhhccc
Q 003093 683 GFAFPRDSP-LAVDISTAILKLSENGDLQRIHDKWLLR 719 (848)
Q Consensus 683 ~~~~~k~sp-l~~~in~~i~~l~e~G~~~~~~~kw~~~ 719 (848)
+++++|++| +.+.||++|.++.++|.++++.+||+..
T Consensus 212 ~~~~~k~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~~ 249 (287)
T 2vha_A 212 GCMLRKDDPQFKKLMDDTIAQVQTSGEAEKWFDKWFKN 249 (287)
T ss_dssp EEEECTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHS
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhCchHHHHHHHHcCC
Confidence 999999988 9999999999999999999999999983
No 72
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=99.80 E-value=1.9e-19 Score=189.54 Aligned_cols=216 Identities=19% Similarity=0.278 Sum_probs=189.2
Q ss_pred CceEEEEecCCCCccceEEeCCCcceeeeeHHHHHHHHHhCCCCcceEEeeCCCCCCCCChhHHHHHHhcCeeeEEeece
Q 003093 375 GRHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDI 454 (848)
Q Consensus 375 g~~lrv~v~~~~~~~p~~~~~~~~~~~G~~~dll~~i~~~l~~~~~~~~~~~~~~~~n~s~~~~i~~l~~g~~D~~~~~~ 454 (848)
..+|||++.. +|+||.+.+.++.+.|+.+|+++.+++++|++++++.. .|.+++.+|.+|++|++++.+
T Consensus 56 ~~~l~v~~~~--~~~P~~~~~~~g~~~G~~~dl~~~i~~~~G~~v~~~~~---------~~~~~~~~l~~G~~D~~~~~~ 124 (283)
T 2yln_A 56 KGTVTVGTEG--TYAPFTYHDKDGKLTGYDVEVTRAVAEKLGVKVEFKET---------QWDSMMAGLKAGRFDVVANQV 124 (283)
T ss_dssp TCEEEEEECS--EETTTEEECTTSCEESHHHHHHHHHHHHHTCEEEEEEC---------CGGGHHHHHHHTSCSEECSSC
T ss_pred CCeEEEEECC--CCCCeeEECCCCCEeeehHHHHHHHHHHcCCceEEEEC---------CHHHHHHHHHCCCcCEEEecC
Confidence 3579999874 58999886678899999999999999999998666554 299999999999999999888
Q ss_pred ee-ecCceeeeeecccccccceEEEEeccCCCCCcccccccCchhhHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCc
Q 003093 455 AI-ITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKRQV 533 (848)
Q Consensus 455 ~~-t~~R~~~~dfs~p~~~~~~~~v~~~~~~~~~~~~fl~PF~~~vW~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 533 (848)
.. +.+|.+.++|+.||+..+..+++++..
T Consensus 125 ~~~t~~r~~~~~~~~p~~~~~~~l~~~~~~-------------------------------------------------- 154 (283)
T 2yln_A 125 GLTSPERQATFDKSEPYSWSGAVLVAHNDS-------------------------------------------------- 154 (283)
T ss_dssp CCCSHHHHHHEEECSCSEEECEEEEEETTC--------------------------------------------------
T ss_pred ccCChhhhcceEeccCeeeecEEEEEECCC--------------------------------------------------
Confidence 88 999999999999999999999998765
Q ss_pred chhhhhHHHHhhhcCccccccchhHHHHHHHHhhhhhhhccccceeeeeeeeccccCCCCChHHhhcCCCCeeEEeCchH
Q 003093 534 VTIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVNSFA 613 (848)
Q Consensus 534 ~~~~~~~~~~l~~~~~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~s~~~i~~~~~s~~ 613 (848)
+|++++||. |++||+..|+..
T Consensus 155 ---------------------------------------------------------~i~s~~dL~--G~~v~v~~g~~~ 175 (283)
T 2yln_A 155 ---------------------------------------------------------NIKSIADIK--GVKTAQSLTSNY 175 (283)
T ss_dssp ---------------------------------------------------------SCCSGGGCT--TSEEEECTTSHH
T ss_pred ---------------------------------------------------------CCCCHHHhC--CCEEEEecCchH
Confidence 588999996 899999999988
Q ss_pred HHHHHhhhCCCccCcccCCCHHHHHHHhhcCCCCCceEEEEccHHHHHHHHhcCC--cEEEeC-Cccc-cCCceeeecCC
Q 003093 614 RNYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRC--EFSIVG-QVFT-KNGWGFAFPRD 689 (848)
Q Consensus 614 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~--~l~~~~-~~~~-~~~~~~~~~k~ 689 (848)
..++.+ . ..+++.+.+..+.+++|.+ |++|+++.+...+.+++++.. ++.+++ ..+. ...++++++|+
T Consensus 176 ~~~l~~-~---~~~~~~~~~~~~~~~~l~~----g~vDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~k~ 247 (283)
T 2yln_A 176 GEKAKA-A---GAQLVPVDGLAQSLTLIEQ----KRADATLNDELAVLDYLKKNPNAGVKIVWSAPADEKVGSGLIVNKG 247 (283)
T ss_dssp HHHHHH-T---TCEEEECSSHHHHHHHHHT----TSCCEEEEEHHHHHHHHHHSTTSSEEEEEECCGGGCEEECCEEESS
T ss_pred HHHHHH-c---CCeEEEeCCHHHHHHHHHc----CCCCEEEecHHHHHHHHHhCCCCcEEEccCcccCCcccEEEEEeCC
Confidence 888754 2 2467788899999999999 999999999999998887754 488887 6666 77899999999
Q ss_pred CC-chHHHHHHHHhhhccCchHHHHHhhcc
Q 003093 690 SP-LAVDISTAILKLSENGDLQRIHDKWLL 718 (848)
Q Consensus 690 sp-l~~~in~~i~~l~e~G~~~~~~~kw~~ 718 (848)
+| +.+.||++|.++.++|.+++|.+||+.
T Consensus 248 ~~~l~~~i~~al~~l~~~g~~~~i~~k~~~ 277 (283)
T 2yln_A 248 NDEAVAKFSTAINELKADGTLKKLGEQFFG 277 (283)
T ss_dssp CHHHHHHHHHHHHHHHHTTHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHHHCCcHHHHHHHHcC
Confidence 88 999999999999999999999999987
No 73
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=99.71 E-value=1.6e-17 Score=171.95 Aligned_cols=213 Identities=17% Similarity=0.320 Sum_probs=179.1
Q ss_pred ceEEEEecCCCCccceEEeC-CCcceeeeeHHHHHHHHHhC---CCCcceEEeeCCCCCCCCChhHHHHHHhcCeeeEEe
Q 003093 376 RHLRIGVPNRVSFREFVSVK-GSEMTSGFCIDVFTAAINLL---PYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAV 451 (848)
Q Consensus 376 ~~lrv~v~~~~~~~p~~~~~-~~~~~~G~~~dll~~i~~~l---~~~~~~~~~~~~~~~~n~s~~~~i~~l~~g~~D~~~ 451 (848)
++||||+.. +++||.+.+ .++.+.|+++|+++.+++++ |++++++.. +|.+++..|.+|++|+++
T Consensus 38 ~~l~vg~~~--~~~p~~~~~~~~g~~~G~~~~l~~~~~~~~~~pg~~v~~~~~---------~~~~~~~~l~~g~~D~~~ 106 (259)
T 2v25_A 38 GQLIVGVKN--DVPHYALLDQATGEIKGFEVDVAKLLAKSILGDDKKIKLVAV---------NAKTRGPLLDNGSVDAVI 106 (259)
T ss_dssp TCEEEEECS--EETTTEEEETTTTEEESHHHHHHHHHHHHHHSCTTSEEEEEC---------CTTTHHHHHHTTSCSEEC
T ss_pred CeEEEEECC--CCCCeEEEECCCCeEEEeeHHHHHHHHHHhcCCCcceEEEEc---------CHHHHHHHHhCCCCCEEE
Confidence 579999864 688888743 57899999999999999999 988666553 389999999999999999
Q ss_pred eceeeecCceeeeeecccccccceEEEEeccCCCCCcccccccCchhhHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCC
Q 003093 452 GDIAIITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKR 531 (848)
Q Consensus 452 ~~~~~t~~R~~~~dfs~p~~~~~~~~v~~~~~~~~~~~~fl~PF~~~vW~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 531 (848)
+++..+++|.+.++|+.||.....++++++..
T Consensus 107 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~------------------------------------------------ 138 (259)
T 2v25_A 107 ATFTITPERKRIYNFSEPYYQDAIGLLVLKEK------------------------------------------------ 138 (259)
T ss_dssp SSCBCCHHHHTTEEECSCSEEEEEEEEEEGGG------------------------------------------------
T ss_pred ecCccCHHHHhcCcccccceeCceEEEEeCCC------------------------------------------------
Confidence 88888899999999999999999999998654
Q ss_pred CcchhhhhHHHHhhhcCccccccchhHHHHHHHHhhhhhhhccccceeeeeeeeccccCCCCChHHhhcCCCCeeEEeCc
Q 003093 532 QVVTIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVNS 611 (848)
Q Consensus 532 ~~~~~~~~~~~~l~~~~~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~s~~~i~~~~~s 611 (848)
++++++||. ++++++..|+
T Consensus 139 -----------------------------------------------------------~i~~~~dL~--g~~i~~~~g~ 157 (259)
T 2v25_A 139 -----------------------------------------------------------KYKSLADMK--GANIGVAQAA 157 (259)
T ss_dssp -----------------------------------------------------------CCCSGGGCT--TCEEEEETTC
T ss_pred -----------------------------------------------------------CCCCHHHhC--CCEEEEecCC
Confidence 578899998 8889999988
Q ss_pred hHHHHHHhhh---CCCccCcccCCCHHHHHHHhhcCCCCCceEEEEccHHHHHHHHhcCCcEEEeCCccccCCceeeecC
Q 003093 612 FARNYLVDEL---NIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRCEFSIVGQVFTKNGWGFAFPR 688 (848)
Q Consensus 612 ~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k 688 (848)
....++.+.. +. ..+++.+++.++.+++|.. |++|+++.+...+.+++++..+ +++..+...+++++++|
T Consensus 158 ~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~l~~----g~vDa~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~k 230 (259)
T 2v25_A 158 TTKKAIGEAAKKIGI-DVKFSEFPDYPSIKAALDA----KRVDAFSVDKSILLGYVDDKSE--ILPDSFEPQSYGIVTKK 230 (259)
T ss_dssp SHHHHHHHHHHHTTC-CCEEEEESSHHHHHHHHHT----TSSSEEEEEHHHHTTTCCTTEE--ECSCCCSEEEECCEEET
T ss_pred chHHHHHHHHHhcCC-ceeEEEeCCHHHHHHHHHc----CCCcEEEecHHHHHHHHHhCCC--ccccccccceeEEEEcC
Confidence 7776664422 22 1256678899999999999 9999999999888887776554 56666667788999999
Q ss_pred CCC-chHHHHHHHHhhhccCchHHHHHhhc
Q 003093 689 DSP-LAVDISTAILKLSENGDLQRIHDKWL 717 (848)
Q Consensus 689 ~sp-l~~~in~~i~~l~e~G~~~~~~~kw~ 717 (848)
+.| +.+.+|++|.++.++ ++++.+||.
T Consensus 231 ~~~~l~~~~~~~l~~~~~~--~~~i~~k~~ 258 (259)
T 2v25_A 231 DDPAFAKYVDDFVKEHKNE--IDALAKKWG 258 (259)
T ss_dssp TCHHHHHHHHHHHHHTHHH--HHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHH--HHHHHHHhC
Confidence 986 999999999999999 899999984
No 74
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=98.69 E-value=4.8e-08 Score=103.07 Aligned_cols=213 Identities=14% Similarity=0.109 Sum_probs=142.5
Q ss_pred ceEEEEecCCCCccceEEeCCCcceeeeeHHHHHHHHHhCCCCcceEEeeCCCCCCCCChhHHHHHHhcCeeeEEeec-e
Q 003093 376 RHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGD-I 454 (848)
Q Consensus 376 ~~lrv~v~~~~~~~p~~~~~~~~~~~G~~~dll~~i~~~l~~~~~~~~~~~~~~~~n~s~~~~i~~l~~g~~D~~~~~-~ 454 (848)
++||||+.. .++|+.+. ....++++.+++++|.++++... .+|.+++..|..|++|+++.+ .
T Consensus 4 ~~l~iG~~p--~~~p~~~~-------~~~~~l~~~l~k~lG~~ve~~~~--------~~~~~~i~al~~G~vDi~~~~~~ 66 (310)
T 3n5l_A 4 PVINFGIIS--TESSQNLK-------SIWEPFLKDMSQQTGYQVKAFFA--------PDYAGIIQGMRFDKVDIAWYGNK 66 (310)
T ss_dssp CEEEEEECC--SSCHHHHH-------HHHHHHHHHHHHHHSSEEEEECC--------SSHHHHHHHHHTTSCSEEECCHH
T ss_pred cEEEEEEec--CCCHHHHH-------HHHHHHHHHHHHHhCCCEEEEeC--------CCHHHHHHHHHcCCCCEEEECcH
Confidence 689999984 45554431 11258999999999988555432 469999999999999999754 3
Q ss_pred eeec--Cceeeeeecccccc-----cceEEEEeccCCCCCcccccccCchhhHHHHHHHHHHHHHHhhhhhcccCCCCCC
Q 003093 455 AIIT--NRTKMADFTQPYIE-----SGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRG 527 (848)
Q Consensus 455 ~~t~--~R~~~~dfs~p~~~-----~~~~~v~~~~~~~~~~~~fl~PF~~~vW~~~~~~~~~~~~v~~~~~~~~~~~~~~ 527 (848)
.... +|.....|..++.. ...++++++.
T Consensus 67 ~~~~~~~~~~~~~~a~~~~~~g~~~~~~~lvv~~d--------------------------------------------- 101 (310)
T 3n5l_A 67 AAMEAVDRAHGEIFAQTVAASGAPGYWSLLIANKD--------------------------------------------- 101 (310)
T ss_dssp HHHHHHHHSCEEEEEEEEETTCCSEEEEEEEEETT---------------------------------------------
T ss_pred HHHHHHHhcCCeEEEEEeccCCCcceEEEEEEECC---------------------------------------------
Confidence 3332 23333445433210 1235555543
Q ss_pred CCCCCcchhhhhHHHHhhhcCccccccchhHHHHHHHHhhhhhhhccccceeeeeeeeccccCCCCChHHhhc--CCCCe
Q 003093 528 PPKRQVVTIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRS--SNYPI 605 (848)
Q Consensus 528 ~~~~~~~~~~~~~~~~l~~~~~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~--s~~~i 605 (848)
.+|++++||++ .++++
T Consensus 102 --------------------------------------------------------------s~i~sl~DL~~~~kgk~i 119 (310)
T 3n5l_A 102 --------------------------------------------------------------SKIDSLEDMLANAKSLTF 119 (310)
T ss_dssp --------------------------------------------------------------CSCCSHHHHHHTGGGCEE
T ss_pred --------------------------------------------------------------CCCCCHHHHhhhcCCCEE
Confidence 47999999932 26778
Q ss_pred eEE-eCchHH----HH-HHhhhCCCc---cCcccCCCHHHHHHHhhcCCCCCceEEEEccHHHHHHHHhcC----CcEEE
Q 003093 606 GYQ-VNSFAR----NY-LVDELNIDE---SRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTR----CEFSI 672 (848)
Q Consensus 606 ~~~-~~s~~~----~~-l~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~----~~l~~ 672 (848)
++. .|+... .+ +....+... .+.+...+..+.+.+|.. |++|+.+.+...+..+.++. .++++
T Consensus 120 a~~~~gs~~~~l~~~~~l~~~~Gi~~~~~~~~v~~g~~~~~~~al~~----G~vDa~~~~~~~~~~~~~~~~~~~~~lrv 195 (310)
T 3n5l_A 120 GNGDPNSTSGYLVPGYYVFAKNNVDPVKAFKRTLNSSHEVNALAVAN----KQVDVATFNTEGMERLELTQPEKARQLKV 195 (310)
T ss_dssp EECCTTCTTTTHHHHHHTTTTTTCCHHHHSSEEEECCHHHHHHHHHT----TSSSEEEEEHHHHHHHHHHCHHHHTTEEE
T ss_pred EecCCCccHhHHHHHHHHHHHcCCChHHhccccccCCHHHHHHHHHc----CCccEEEecchhHHHHHHhCccchhCEEE
Confidence 863 333221 21 212223221 122334677789999999 99999999998888887764 36777
Q ss_pred eCCccccCCceeeecCCCC--chHHHHHHHHhhhccCchHHHHHhh
Q 003093 673 VGQVFTKNGWGFAFPRDSP--LAVDISTAILKLSENGDLQRIHDKW 716 (848)
Q Consensus 673 ~~~~~~~~~~~~~~~k~sp--l~~~in~~i~~l~e~G~~~~~~~kw 716 (848)
+........++++++++.| +++.++.+|.++.++|..+++.+++
T Consensus 196 l~~s~~~p~~~i~~~~~~~~~l~~~l~~al~~~~~d~~~~~~l~~~ 241 (310)
T 3n5l_A 196 IWKSPLIPGDPLVWRNNLSDEQKNKLRDFFFKYGANAEQKKVLADL 241 (310)
T ss_dssp EEEEEEEECCEEEEETTSCHHHHHHHHHHHHHCCCSHHHHHHHHHT
T ss_pred EEECCCCCCCcEEEECCCCHHHHHHHHHHHHhcCCChhHHHHHHhc
Confidence 6654333457899999955 9999999999999999988887776
No 75
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=98.67 E-value=8.2e-08 Score=101.60 Aligned_cols=215 Identities=13% Similarity=0.137 Sum_probs=141.6
Q ss_pred CCceEEEEecCCCCccceEEeCCCcceeeeeHHHHHHHHHhCCCCcceEEeeCCCCCCCCChhHHHHHHhcCeeeEEee-
Q 003093 374 NGRHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVG- 452 (848)
Q Consensus 374 ~g~~lrv~v~~~~~~~p~~~~~~~~~~~G~~~dll~~i~~~l~~~~~~~~~~~~~~~~n~s~~~~i~~l~~g~~D~~~~- 452 (848)
..++|++|+.. .+.|.. +.....+|++.|++++|.++++... .+|.+++..|..|++|+++.
T Consensus 12 ~~~~l~~Gv~p--~~~~~~-------~~~~~~~l~~~L~k~lG~~ve~~~~--------~~~~~~i~aL~~G~vDia~~~ 74 (321)
T 3p7i_A 12 QEKALNFGIIS--TESQQN-------LKPQWTPFLQDMEKKLGVKVNAFFA--------PDYAGIIQGMRFNKVDIAWYG 74 (321)
T ss_dssp --CCEEEEECC--SSCHHH-------HHHHHHHHHHHHHHHHTSCEEEECC--------SSHHHHHHHHHTTSCSEEECC
T ss_pred cCCcEEEEEec--CCCHHH-------HHHHHHHHHHHHHHHHCCCEEEEec--------CCHHHHHHHHHcCCCcEEEEC
Confidence 35689999984 333322 2223347999999999988555432 46999999999999999974
Q ss_pred ceeeecC--ceeeeeeccccc-----ccceEEEEeccCCCCCcccccccCchhhHHHHHHHHHHHHHHhhhhhcccCCCC
Q 003093 453 DIAIITN--RTKMADFTQPYI-----ESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEF 525 (848)
Q Consensus 453 ~~~~t~~--R~~~~dfs~p~~-----~~~~~~v~~~~~~~~~~~~fl~PF~~~vW~~~~~~~~~~~~v~~~~~~~~~~~~ 525 (848)
+.+.+.. |.....|..|+. ....++++++.
T Consensus 75 ~~~~~~~~~~~~~~~~a~~~~~~g~~~y~~~lvv~~d------------------------------------------- 111 (321)
T 3p7i_A 75 NLSAMEAVDRANGQVFAQTVAADGSPGYWSVLIVNKD------------------------------------------- 111 (321)
T ss_dssp HHHHHHHHHHSCEEEEEEEEETTCCSSBCEEEEEETT-------------------------------------------
T ss_pred hHHHHHHHHhcCCEEEEEEeccCCCcceEEEEEEECC-------------------------------------------
Confidence 3444433 333334443321 01235555543
Q ss_pred CCCCCCCcchhhhhHHHHhhhcCccccccchhHHHHHHHHhhhhhhhccccceeeeeeeeccccCCCCChHHhhc--CCC
Q 003093 526 RGPPKRQVVTIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRS--SNY 603 (848)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~l~~~~~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~--s~~ 603 (848)
.+|++++||++ .++
T Consensus 112 ----------------------------------------------------------------s~i~sl~DL~~~~kgk 127 (321)
T 3p7i_A 112 ----------------------------------------------------------------SPINNLNDLLAKRKDL 127 (321)
T ss_dssp ----------------------------------------------------------------CSCCSHHHHHHTGGGC
T ss_pred ----------------------------------------------------------------CCCCCHHHHHhhcCCC
Confidence 47999999932 166
Q ss_pred CeeEE-eCchH----HHH-HHhhhCCCccC--cccCCCHHHHHHHhhcCCCCCceEEEEccHHHHHHHHhcC----CcEE
Q 003093 604 PIGYQ-VNSFA----RNY-LVDELNIDESR--LVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTR----CEFS 671 (848)
Q Consensus 604 ~i~~~-~~s~~----~~~-l~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~----~~l~ 671 (848)
++++. .|+.. ..+ +....+..... .+.+.+..+.+.+|.. |++|+.+.+...+..+.++. .+++
T Consensus 128 ~va~~~~gsts~~l~~~~~l~~~~Gi~~~~~~~v~~~~~~~a~~al~~----G~vDa~~~~~~~~~~~~~~~p~~~~~lr 203 (321)
T 3p7i_A 128 TFGNGDPNSTSGFLVPGYYVFAKNNISASDFKRTVNAGHETNALAVAN----KQVDVATNNTENLDKLKTSAPEKLKELK 203 (321)
T ss_dssp EEEECCTTCTTTTHHHHHHTTGGGTCCGGGSSEEEECCHHHHHHHHHT----TSSSEEEEEHHHHHTHHHHCHHHHTTEE
T ss_pred EEEeCCCCccHHHHHHHHHHHHHcCCChhHceeeecCCHHHHHHHHHC----CCceEEEechHHHHHHHHhCcchhccEE
Confidence 78753 33322 122 21223333222 2345667889999999 99999999988888777653 3677
Q ss_pred EeCCccccCCceeeecCCCC--chHHHHHHHHhhhccCchHHHHHhh
Q 003093 672 IVGQVFTKNGWGFAFPRDSP--LAVDISTAILKLSENGDLQRIHDKW 716 (848)
Q Consensus 672 ~~~~~~~~~~~~~~~~k~sp--l~~~in~~i~~l~e~G~~~~~~~kw 716 (848)
++........++++++++.| +++.|+.+|.++.++|..+++.+++
T Consensus 204 vl~~s~~~p~~~i~~~k~~~~~l~~~l~~aL~~~~~d~~~~~~l~~~ 250 (321)
T 3p7i_A 204 VIWKSPLIPGDPIVWRKNLSETTKDKIYDFFMNYGKTPEEKAVLERL 250 (321)
T ss_dssp EEEECSCBCCCEEEEETTSCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred EEEEcCCCCCCceeeeCCCCHHHHHHHHHHHHhcCCCHHHHHHHHhc
Confidence 77654334457899999954 9999999999999999888877765
No 76
>2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shigella flexneri 2A} SCOP: c.94.1.1
Probab=98.60 E-value=4.4e-08 Score=96.28 Aligned_cols=182 Identities=12% Similarity=0.060 Sum_probs=131.5
Q ss_pred CcceeeeeHHHHHHHHHhCCCCcceEEeeCCCCCCCCChhHHHHHHhcCeeeEEeeceeeecC------ceeeeeecccc
Q 003093 397 SEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDIAIITN------RTKMADFTQPY 470 (848)
Q Consensus 397 ~~~~~G~~~dll~~i~~~l~~~~~~~~~~~~~~~~n~s~~~~i~~l~~g~~D~~~~~~~~t~~------R~~~~dfs~p~ 470 (848)
..++.|+.--|.+.+. |+++++.... .|.+.+..|++|++|+++.+...+++ |...++|+.||
T Consensus 27 s~~yeGlatgl~~~f~---gi~~~i~~mr--------g~~~RI~aL~~gk~D~aI~S~~aa~e~~~~~~r~~~vdFg~~y 95 (231)
T 2ozz_A 27 TRLYEGLASGLKAQFD---GIPFYYAHMR--------GADIRVECLLNGVYDMAVVSRLAAESYLSQNNLCIALELGPHT 95 (231)
T ss_dssp SHHHHHHHHHHHHTTT---TSCEEEEECS--------CHHHHHHHHHTTSCSEEEEEHHHHHHHHHHSCEEEEEECCTTS
T ss_pred hhhhhHHHHHHHHHhc---CCcEEEEEcc--------ChHHHHHHHHcCCCCEEEEecccchhhhcccCeEEEEEcCCCc
Confidence 5578888888887774 7775565542 49999999999999999999999999 99999999999
Q ss_pred cccceEEEEeccCCCCCcccccccCchhhHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCcchhhhhHHHHhhhcCcc
Q 003093 471 IESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKRQVVTIFWFSFSTMFFAHKE 550 (848)
Q Consensus 471 ~~~~~~~v~~~~~~~~~~~~fl~PF~~~vW~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 550 (848)
+...-.++++++..
T Consensus 96 Yv~~h~li~~~~~~------------------------------------------------------------------ 109 (231)
T 2ozz_A 96 YVGEHQLICRKGES------------------------------------------------------------------ 109 (231)
T ss_dssp SSCCEEEEEETTCG------------------------------------------------------------------
T ss_pred cccCeEEEEeCCCc------------------------------------------------------------------
Confidence 98777788776540
Q ss_pred ccccchhHHHHHHHHhhhhhhhccccceeeeeeeeccccCCCCChHHhhcCCCCeeEEeCchHHHHHHhhhCCCccCccc
Q 003093 551 KTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVNSFARNYLVDELNIDESRLVP 630 (848)
Q Consensus 551 ~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~s~~~i~~~~~s~~~~~l~~~~~~~~~~~~~ 630 (848)
..| ++||+..||.....+.+... ....+..
T Consensus 110 ---------------------------------------~~i----------krVGvd~gS~dq~~lt~~~~-~g~~Ve~ 139 (231)
T 2ozz_A 110 ---------------------------------------GNV----------KRVGLDSRSADQKIMTDVFF-GDSDVER 139 (231)
T ss_dssp ---------------------------------------GGC----------CEEEECTTCHHHHHHHHHHH-TTSCCEE
T ss_pred ---------------------------------------ccc----------EEEEecCCChhHHHHHhhhc-CCCeEEE
Confidence 112 57999999988888765333 4455566
Q ss_pred C-CCHHHHHHHhhcCCCCCceEEEEc--cHHHHHHHHhcCCcEEEe--CC---ccccCCceeeecCCCC-chHHHHHHHH
Q 003093 631 L-NSPEEYAKALKDGPHKGGVAAVVD--DRAYAELFLSTRCEFSIV--GQ---VFTKNGWGFAFPRDSP-LAVDISTAIL 701 (848)
Q Consensus 631 ~-~~~~~~~~~l~~~~~~~~~~a~~~--~~~~~~~~~~~~~~l~~~--~~---~~~~~~~~~~~~k~sp-l~~~in~~i~ 701 (848)
+ .+..+++..|.+ |++||++. +.+... .+.++... .. ......-.++++||.+ +.+.+|++|.
T Consensus 140 ve~~y~~~i~~L~~----G~IDA~Iwn~d~~~a~----~~~~l~~~~l~~~~~~~~~~eavI~v~k~n~~L~~~ln~~I~ 211 (231)
T 2ozz_A 140 VDLSYHESLQRIVK----GDVDAVIWNVVAENEL----TMLGLEATPLTDDPRFLQATEAVVLTRVDDYPMQQLLRAVVD 211 (231)
T ss_dssp EECCHHHHHHHHHH----TSCCEEEEEC-CHHHH----HHTTEEEEECCSCHHHHHTTCEEEEEETTCHHHHHHHHHHCC
T ss_pred EECCHHHHHHHHHc----CCccEEEEcCcchhhh----cCCCcceeccccccccccCCceEEEEECCCHHHHHHHHHHhH
Confidence 7 788999999999 99999999 666554 22333322 22 2234455688999975 8888876653
Q ss_pred hhhccCchHHHHHhhc
Q 003093 702 KLSENGDLQRIHDKWL 717 (848)
Q Consensus 702 ~l~e~G~~~~~~~kw~ 717 (848)
...+..+.++-+
T Consensus 212 ----~~~v~~~Q~~V~ 223 (231)
T 2ozz_A 212 ----KHALLAHQQRVV 223 (231)
T ss_dssp ----HHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHH
Confidence 223444444443
No 77
>2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A {Bordetella pertussis tohama I}
Probab=97.57 E-value=0.00063 Score=70.96 Aligned_cols=121 Identities=12% Similarity=0.180 Sum_probs=81.3
Q ss_pred CCCCChHHhhc------CCCCeeEE-eCchHH---HHHHhhhCCCccCcccCCCHHHHHHHhhcCCCCCceEEEEccHHH
Q 003093 590 SPIKGIDSLRS------SNYPIGYQ-VNSFAR---NYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAY 659 (848)
Q Consensus 590 ~~i~sl~dL~~------s~~~i~~~-~~s~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~ 659 (848)
.+++|++||+. ....+|.. .|+... ..+.+..+.. ...++|....+.+.+|.. |++|+++.....
T Consensus 121 s~~~sl~dL~~~ak~~p~~~~~g~~g~Gs~~hl~~~~l~~~~Gi~-~~~Vpy~G~~~a~~aL~~----G~VD~~~~~~~~ 195 (312)
T 2f5x_A 121 FPPNNIKELAEYVKKNADKISLANAGIGAASHLCGTMLVEALGVN-LLTIPYKGTAPAMNDLLG----KQVDLMCDQTTN 195 (312)
T ss_dssp CSCCSHHHHHHHHHHHGGGCEEEESSTTSHHHHHHHHHHHHHTCC-CEEEECSSHHHHHHHHHT----TSSCEEEEEHHH
T ss_pred CCCCCHHHHHHHHHhCCCceEEeCCCCCcHHHHHHHHHHHHHCCC-eEEeccCChHHHHHHHHc----CCccEEEechHH
Confidence 58999999984 22356665 245322 2333444443 335688899999999999 999999988776
Q ss_pred HHHHHhcCCcEEEe---CC----------ccc---------cCCceeeecCCCC--chHHHHHHHHhhhccCchHHHHHh
Q 003093 660 AELFLSTRCEFSIV---GQ----------VFT---------KNGWGFAFPRDSP--LAVDISTAILKLSENGDLQRIHDK 715 (848)
Q Consensus 660 ~~~~~~~~~~l~~~---~~----------~~~---------~~~~~~~~~k~sp--l~~~in~~i~~l~e~G~~~~~~~k 715 (848)
...+++.. +++.+ ++ .+. ...++++.|++-| +.+.+++++.++.+++.+++...+
T Consensus 196 ~~~~i~~g-~lr~Lav~~~~r~~~~pdvPt~~E~G~~~~~~~~w~gl~ap~g~p~~vv~~l~~al~~~~~~p~~~~~~~~ 274 (312)
T 2f5x_A 196 TTQQITSG-KVKAYAVTSLKRVPTLPDLPTMDESGYKGFEVGIWHGMWAPKGTPKPVVDKLVKSLQAGLADPKFQERMKQ 274 (312)
T ss_dssp HHHHHHTT-SSEEEEECSSSCCTTSTTSCBTTTTTCTTCCCEEEEEEEEETTCCHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHcC-CeEEEEEcCccchhhcCCCCCHhhcCCCCeeEEEEEEEEEcCCCCHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 65555442 33222 11 011 1236789999977 999999999999999888776655
Q ss_pred h
Q 003093 716 W 716 (848)
Q Consensus 716 w 716 (848)
+
T Consensus 275 ~ 275 (312)
T 2f5x_A 275 L 275 (312)
T ss_dssp T
T ss_pred C
Confidence 4
No 78
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus}
Probab=97.57 E-value=0.00022 Score=76.47 Aligned_cols=176 Identities=16% Similarity=0.034 Sum_probs=107.3
Q ss_pred HHHHHHHhCCCCcceEEeeCCCCCCCCChhHHHHHHhcCeeeEEeeceeee----cCceeeeeecccccccceEEEEecc
Q 003093 407 VFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDIAII----TNRTKMADFTQPYIESGLVVVAPVR 482 (848)
Q Consensus 407 ll~~i~~~l~~~~~~~~~~~~~~~~n~s~~~~i~~l~~g~~D~~~~~~~~t----~~R~~~~dfs~p~~~~~~~~v~~~~ 482 (848)
+.+.+++. |+++++....+ .+++..++..|..|++|+++.+.... .++.....++.++...+..+++++.
T Consensus 35 l~~~~~~~-G~~v~~~~~~~-----~g~~~~~~~al~~G~~D~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~lvv~~~ 108 (348)
T 3uif_A 35 FPEELRKQ-GIKVEWVPAAM-----ASVGPVINEGFASGKIDFGIYGDLPPIILNASKPTVQLVAPWGTTSNSYLVVPKN 108 (348)
T ss_dssp HHHHHHHT-TEEEEEEEECT-----TCHHHHHHHHHHTTCCCEEEEESHHHHHHHHHSCCEEEEEECCCCCCCEEEEETT
T ss_pred HHHHHHhc-CCeEEEEeccc-----CCCcHHHHHHHHcCCCCEEecCcHHHHHHHhCCCCEEEEEeccCCCceEEEEECC
Confidence 44556555 77755533443 23467789999999999998544332 4455556666667777777777754
Q ss_pred CCCCCcccccccCchhhHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCcchhhhhHHHHhhhcCccccccchhHHHHH
Q 003093 483 KLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKRQVVTIFWFSFSTMFFAHKEKTVSALGRLVLI 562 (848)
Q Consensus 483 ~~~~~~~~fl~PF~~~vW~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~s~~~R~~~~ 562 (848)
T Consensus 109 -------------------------------------------------------------------------------- 108 (348)
T 3uif_A 109 -------------------------------------------------------------------------------- 108 (348)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhhhhhhccccceeeeeeeeccccCCCCChHHhhcCCCCeeEEeCchHHHHHHh---hhCCCcc--CcccCCCHHHH
Q 003093 563 IWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVNSFARNYLVD---ELNIDES--RLVPLNSPEEY 637 (848)
Q Consensus 563 ~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~s~~~i~~~~~s~~~~~l~~---~~~~~~~--~~~~~~~~~~~ 637 (848)
++|++++||. |++|++..|+.....+.. ..+.... +++.+ +..+.
T Consensus 109 ---------------------------s~i~s~~DLk--Gk~I~v~~gs~~~~~~~~~l~~~Gl~~~~v~~v~~-~~~~~ 158 (348)
T 3uif_A 109 ---------------------------STAKSIKDLK--GKKIALHRGRPWELAFSNLLQSEGLTFKDFKIVNV-NPQVG 158 (348)
T ss_dssp ---------------------------CCCCSGGGGT--TSEEEECTTSTHHHHHHHHHHHTTCCGGGSEEECC-CHHHH
T ss_pred ---------------------------CCCCCHHHcC--CCEEEecCCChHHHHHHHHHHHcCCCHHHeEEEEC-CHHHH
Confidence 4799999998 999999888765444322 2333322 23333 56788
Q ss_pred HHHhhcCCCCCceEEEEccHHHHHHHHhcCCcEEEeCCcc---ccCCceeeecCC----CC-chHHHHHHHHh
Q 003093 638 AKALKDGPHKGGVAAVVDDRAYAELFLSTRCEFSIVGQVF---TKNGWGFAFPRD----SP-LAVDISTAILK 702 (848)
Q Consensus 638 ~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~k~----sp-l~~~in~~i~~ 702 (848)
..+|.+ |++||++...+..........+.......+ ......++++++ .| ..+.|.+++.+
T Consensus 159 ~~al~~----G~vDa~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~a~~~ 227 (348)
T 3uif_A 159 AAALAS----GTVDGFFSLFDSYILEDRGVGKIIWSTKTAPVDWKLMGGVWARNDFVKQNPEITQAIVTAYLK 227 (348)
T ss_dssp HHHHHH----TSSSEEEESTTHHHHHHTTSEEEEEEGGGSCGGGSCCEEEEEEHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHc----CCCCEEEechHHHHHHhcCCcEEEEeccccCCCCcceeEEEECHHHHHHCHHHHHHHHHHHHH
Confidence 999999 899998887776643322221222222211 122345666665 44 55555555544
No 79
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli}
Probab=97.52 E-value=0.00038 Score=73.02 Aligned_cols=121 Identities=14% Similarity=0.174 Sum_probs=72.6
Q ss_pred CCCChHHhhcCCCCeeEEeCchHHHHHHh---hhCCCccCcc-cCCCHHHHHHHhhcCCCCCceEEEEccHHHHHHHHhc
Q 003093 591 PIKGIDSLRSSNYPIGYQVNSFARNYLVD---ELNIDESRLV-PLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLST 666 (848)
Q Consensus 591 ~i~sl~dL~~s~~~i~~~~~s~~~~~l~~---~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~ 666 (848)
+|++++||. |+++++..|+.....+.. ..+.....+. ...+..+...++.. |++||++...++..+...+
T Consensus 96 ~i~s~~dL~--Gk~i~~~~gs~~~~~l~~~l~~~Gl~~~~v~~~~~~~~~~~~al~~----G~vDa~~~~~~~~~~~~~~ 169 (308)
T 2x26_A 96 PIKTVADLK--GHKVAFQKGSSSHNLLLRALRQAGLKFTDIQPTYLTPADARAAFQQ----GNVDAWAIWDPYYSAALLQ 169 (308)
T ss_dssp SCCSGGGGT--TSEEEECTTSHHHHHHHHHHHHTTCCGGGSEEEECCHHHHHHHHHT----TSSSEEEEETTHHHHHHHH
T ss_pred CCCCHHHcC--CCEEeeeCCCcHHHHHHHHHHHcCCCHHHeEEEecChHHHHHHHHc----CCCCEEEecchhHHHHHhc
Confidence 688999998 889999878765544322 2233322221 23467889999999 8999998888877766654
Q ss_pred CCcEEEeCC--ccccCCceeeec----CCCC-chHHHHHHHHh----hhccC-chHHHHHhhcc
Q 003093 667 RCEFSIVGQ--VFTKNGWGFAFP----RDSP-LAVDISTAILK----LSENG-DLQRIHDKWLL 718 (848)
Q Consensus 667 ~~~l~~~~~--~~~~~~~~~~~~----k~sp-l~~~in~~i~~----l~e~G-~~~~~~~kw~~ 718 (848)
. .++++.. .+......+++. +..| +.+.|++++.+ +.+++ ...++..+|+.
T Consensus 170 ~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~al~~a~~~~~~~~~~~~~~~~~~~~ 232 (308)
T 2x26_A 170 G-GVRVLKDGTDLNQTGSFYLAARPYAEKNGAFIQGVLATFSEADALTRSQREQSIALLAKTMG 232 (308)
T ss_dssp S-SEEEEEESTTSCCCCEEEEEEHHHHHHTHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHT
T ss_pred C-CcEEEecCCCcCCcceEEEEcHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHhC
Confidence 3 3444432 221222223332 3344 77778777776 34443 34555566654
No 80
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=97.45 E-value=0.0011 Score=70.21 Aligned_cols=93 Identities=20% Similarity=0.195 Sum_probs=58.4
Q ss_pred CCCCChHHhhcCCCCeeEEeCchHHHHHHh---hhCCCcc--CcccCCCHHHHHHHhhcCCCCCceEEEEccHHHHHHHH
Q 003093 590 SPIKGIDSLRSSNYPIGYQVNSFARNYLVD---ELNIDES--RLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFL 664 (848)
Q Consensus 590 ~~i~sl~dL~~s~~~i~~~~~s~~~~~l~~---~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~ 664 (848)
.+|++++||. |++|++..|+.....+.. ..+.... +++.+ +..+...+|.+ |++||++...++.....
T Consensus 121 s~I~s~~DLk--Gk~i~v~~gs~~~~~~~~~l~~~Gl~~~~v~~v~~-~~~~~~~al~~----G~vDa~~~~~p~~~~~~ 193 (324)
T 3ksx_A 121 SALRTVADLK--GKRIAFQKGSSAHNLLLRVLAKSGLSMRDITPLYL-SPANARAAFAA----GQVDAWAIWDPWYSALT 193 (324)
T ss_dssp CSCCSGGGGT--TCEEEECTTSHHHHHHHHHHHHTTCCGGGSEEEEC-CHHHHHHHHHT----TCCSEEEEETTHHHHHH
T ss_pred CCCCCHHHhC--CCEEEecCCChHHHHHHHHHHHcCCCHHHeEEEeC-CHHHHHHHHHc----CCCCEEEEccHHHHHHH
Confidence 4799999998 999999988755443322 2333322 33333 67889999999 89999888888777665
Q ss_pred hcCC-cEEEeCCccccCCceeeecCC
Q 003093 665 STRC-EFSIVGQVFTKNGWGFAFPRD 689 (848)
Q Consensus 665 ~~~~-~l~~~~~~~~~~~~~~~~~k~ 689 (848)
.+.. ++......+......++++++
T Consensus 194 ~~~~~~~l~~~~~~~~~~~~~~~~~~ 219 (324)
T 3ksx_A 194 LDGSARLLANGEGLGLTGGFFLSSRR 219 (324)
T ss_dssp HTTSEEEEEESTTSCCCCEEEEEEHH
T ss_pred hcCCcEEEecccccCCCccEEEECHH
Confidence 5532 333333333333334555443
No 81
>2qpq_A Protein BUG27; alpha/beta domain, venus flytrap, transport protein; HET: CIT; 1.92A {Bordetella pertussis}
Probab=97.44 E-value=0.0012 Score=68.62 Aligned_cols=121 Identities=14% Similarity=0.157 Sum_probs=81.3
Q ss_pred CCCCChHHhhcC------CCCeeEE-eCchHH---HHHHhhhCCCccCcccCCCHHHHHHHhhcCCCCCceEEEEccHHH
Q 003093 590 SPIKGIDSLRSS------NYPIGYQ-VNSFAR---NYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAY 659 (848)
Q Consensus 590 ~~i~sl~dL~~s------~~~i~~~-~~s~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~ 659 (848)
.+++|++||+.. ...+|.. .|+... ..+.+..+.. ...++|....+.+.+|.. |++|+++.....
T Consensus 112 s~~~sl~dL~~~ak~~p~~~~~g~~g~Gs~~hl~~~~l~~~~G~~-~~~Vpy~g~~~a~~al~~----G~vD~~~~~~~~ 186 (301)
T 2qpq_A 112 SKYKTLGELMAAAKQTNTQVTYGSCGNGTPQHLAGELLNVSAKTH-MVHVPYKGCGPALNDVLG----SQIGLAVVTASS 186 (301)
T ss_dssp CSCCSHHHHHHHTCSSSCCCEEEESSTTSHHHHHHHHHHHHHTCC-CEEEECSSHHHHHHHHHT----TSSSCEEEEHHH
T ss_pred CCCCCHHHHHHHHHhCCCceEEecCCCCcHHHHHHHHHHHHhCCC-eEEeccCChHHHHHHHHC----CCccEEEEcHHH
Confidence 589999999741 2235554 244322 2333344443 335688899999999999 899999988766
Q ss_pred HHHHHhcCCcEEEe---CC----------cc---------ccCCceeeecCCCC--chHHHHHHHHhhhccCchHHHHHh
Q 003093 660 AELFLSTRCEFSIV---GQ----------VF---------TKNGWGFAFPRDSP--LAVDISTAILKLSENGDLQRIHDK 715 (848)
Q Consensus 660 ~~~~~~~~~~l~~~---~~----------~~---------~~~~~~~~~~k~sp--l~~~in~~i~~l~e~G~~~~~~~k 715 (848)
...+++. .+++.+ ++ .+ ....++++.|+|-| ..+.+++++.++.+++.+++..++
T Consensus 187 ~~~~i~~-g~lr~Lav~~~~r~~~~pdvPt~~e~G~~~~~~~~w~gl~ap~g~p~~vv~~l~~al~~~~~~~~~~~~~~~ 265 (301)
T 2qpq_A 187 AIPFIKA-GKLQALAVTSKERSALLPEVPTVAEQGVAGYELNQWHGLLVPGATPMAVRQKLYDGIAKVMQRDDVQKKLAD 265 (301)
T ss_dssp HHHHHHT-TSEEEEEECSSSCCTTCTTSCBSGGGTCTTCCCEEEEEEEEETTCCHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHhc-CCeEEEEEcCCccccccCCCCChHHhCCCceEEEeEEEEEecCCCCHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 6545443 334332 11 01 11236888999977 999999999999999888877666
Q ss_pred h
Q 003093 716 W 716 (848)
Q Consensus 716 w 716 (848)
+
T Consensus 266 ~ 266 (301)
T 2qpq_A 266 L 266 (301)
T ss_dssp H
T ss_pred C
Confidence 5
No 82
>2dvz_A BUGE, putative exported protein; periplamsic binding proteins, carboxylate binding, glutamate, transport protein; HET: GLU; 2.30A {Bordetella pertussis}
Probab=97.41 E-value=0.00088 Score=69.94 Aligned_cols=122 Identities=13% Similarity=0.185 Sum_probs=80.6
Q ss_pred CCCCChHHhhcC------CCCeeEE-eCchHH---HHHHhhhCCCccCcccCCCHHHHHHHhhcCCCCCceEEEEccHHH
Q 003093 590 SPIKGIDSLRSS------NYPIGYQ-VNSFAR---NYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAY 659 (848)
Q Consensus 590 ~~i~sl~dL~~s------~~~i~~~-~~s~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~ 659 (848)
.+++|++||+.. ...+|.. .|+... ..+.+..+.. ...++|....+.+.+|.. |++|+++.....
T Consensus 125 s~~~tl~dL~~~ak~~p~~~~~g~~g~Gs~~hl~~~~l~~~~Gi~-~~~Vpy~G~~~a~~al~~----G~vD~~~~~~~~ 199 (314)
T 2dvz_A 125 FPAKDFKGFLEELKKNPGKYSYGSSGTCGVLHLMGESFKMATGTD-IVHVPYKGSGPAVADAVG----GQIELIFDNLPS 199 (314)
T ss_dssp SSCSSHHHHHHHHHTSTTTCEEEESCTTSHHHHHHHHHHHHHTCC-CEEEECSSHHHHHHHHHH----TSSSEEEEEHHH
T ss_pred CCCCCHHHHHHHHHhCCCcEEEeCCCCCcHHHHHHHHHHHHhCCC-eEEcccCCHHHHHHHHHc----CCceEEEEcHHH
Confidence 589999999741 2345554 244322 2333444443 335688889999999999 899999988766
Q ss_pred HHHHHhcC-Cc-EEEeCC----------cc---------ccCCceeeecCCCC--chHHHHHHHHhhhccCchHHHHHhh
Q 003093 660 AELFLSTR-CE-FSIVGQ----------VF---------TKNGWGFAFPRDSP--LAVDISTAILKLSENGDLQRIHDKW 716 (848)
Q Consensus 660 ~~~~~~~~-~~-l~~~~~----------~~---------~~~~~~~~~~k~sp--l~~~in~~i~~l~e~G~~~~~~~kw 716 (848)
..-+++.. -+ +-+.++ .+ ....++++.|++-| ..+.+++++.++.+++.+++..+++
T Consensus 200 ~~~~i~~g~lr~Lav~~~~r~~~~pdvPt~~e~G~~~~~~~~w~gl~ap~g~p~~vv~~l~~al~~~~~~p~~~~~~~~~ 279 (314)
T 2dvz_A 200 SMPQIQAGKLRAMAIAWPTRIDAIKDVPTFADAGFPVLNQPVWYGLLAPKGTPMDVVNKLRDAAVVALKDPKVIKALDDQ 279 (314)
T ss_dssp HHHHHHTTSSEEEEEESSSCCGGGTTSCBTTTTTCGGGCCCEEEEEEEETTCCHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHcCCEEEEEecCccccccCCCCCCHHhcCCCceEEeEEEEEEEcCCCCHHHHHHHHHHHHHHHcCHHHHHHHHHC
Confidence 55444432 22 222211 01 01236788999977 9999999999999998887766655
No 83
>3qsl_A Putative exported protein; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella bronchiseptica}
Probab=97.38 E-value=0.00076 Score=71.90 Aligned_cols=137 Identities=12% Similarity=0.151 Sum_probs=97.2
Q ss_pred HHhCCCCcceEEeeCCCCCCCCChhHHHHHHhcCeeeEEeeceeee----cCceeeeeecccccccceEEEEeccCCCCC
Q 003093 412 INLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDIAII----TNRTKMADFTQPYIESGLVVVAPVRKLDSN 487 (848)
Q Consensus 412 ~~~l~~~~~~~~~~~~~~~~n~s~~~~i~~l~~g~~D~~~~~~~~t----~~R~~~~dfs~p~~~~~~~~v~~~~~~~~~ 487 (848)
.+..|+++++. ++ +++..++..|.+|++|+++++.... .++.....+..++...+..+++++..
T Consensus 59 ~~~~g~~v~~~--~~------~~~~~~~~~l~~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---- 126 (346)
T 3qsl_A 59 FKDEGLDVSIA--DF------AGGSKALQAVVGGSADVVSGAFEHTLSLQAKGQFYRAFALQGRAPMIGVGVSKKN---- 126 (346)
T ss_dssp HHHTTCEEEEE--EC------SSHHHHHHHHHTTSCSEEEEETHHHHHHHHTTCCEEEEEESBSSCCEEEEEETTT----
T ss_pred hHhhCCeEEEE--ec------CChHHHHHHHHCCCCCEEccchHHHHHHHhCCCCeEEEEecccCCCcEEEEecCc----
Confidence 35678775554 32 4689999999999999998765443 45666777777777667777776543
Q ss_pred cccccccCchhhHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCcchhhhhHHHHhhhcCccccccchhHHHHHHHHhh
Q 003093 488 AWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKRQVVTIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFV 567 (848)
Q Consensus 488 ~~~fl~PF~~~vW~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~s~~~R~~~~~w~~~ 567 (848)
T Consensus 127 -------------------------------------------------------------------------------- 126 (346)
T 3qsl_A 127 -------------------------------------------------------------------------------- 126 (346)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhccccceeeeeeeeccccCCCCChHHhhcCCCCeeEE-eCchHHHHHH---hhhCCC--ccCcccCCCHHHHHHHh
Q 003093 568 VLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQ-VNSFARNYLV---DELNID--ESRLVPLNSPEEYAKAL 641 (848)
Q Consensus 568 ~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~s~~~i~~~-~~s~~~~~l~---~~~~~~--~~~~~~~~~~~~~~~~l 641 (848)
.++|++++||. |++|++. .|+....++. +..+.. ..+++.+....+...+|
T Consensus 127 ---------------------~~~i~s~~DL~--Gk~i~~~~~gs~~~~~~~~~l~~~G~~~~~v~~~~~~~~~~~~~al 183 (346)
T 3qsl_A 127 ---------------------LPGYKGPADLK--GRKIGVTAPGSSTNMVVNFFLAKHGLKASDVSFIGVGAGAGAVTAL 183 (346)
T ss_dssp ---------------------CTTCCSGGGGT--TCEEEESSTTSHHHHHHHHHHHHTTCCGGGSEEEECCSSHHHHHHH
T ss_pred ---------------------ccCCCChHHcC--CCEEEECCCCcHHHHHHHHHHHHcCCCHHHeEEEecCCcHHHHHHH
Confidence 13899999998 8899998 5765443332 233332 23456677778999999
Q ss_pred hcCCCCCceEEEEccHHHHHHHHhcC
Q 003093 642 KDGPHKGGVAAVVDDRAYAELFLSTR 667 (848)
Q Consensus 642 ~~~~~~~~~~a~~~~~~~~~~~~~~~ 667 (848)
.+ |++|+++...++......+.
T Consensus 184 ~~----G~vDa~~~~~p~~~~~~~~g 205 (346)
T 3qsl_A 184 RS----GQIDAISNTDPVVSMLETSG 205 (346)
T ss_dssp HH----TSCSEEEEETTHHHHHHHTT
T ss_pred Hc----CCccEEEecchhHHHHHhCC
Confidence 99 89999998888776655554
No 84
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp}
Probab=97.37 E-value=0.00017 Score=77.05 Aligned_cols=122 Identities=12% Similarity=0.116 Sum_probs=75.3
Q ss_pred CCCCChHHh-hcCCCCeeEEeCchHHHHH----HhhhCCCc--cCcccCCCHHHHHHHhhcCCCCCceEEEEccHHHHHH
Q 003093 590 SPIKGIDSL-RSSNYPIGYQVNSFARNYL----VDELNIDE--SRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAEL 662 (848)
Q Consensus 590 ~~i~sl~dL-~~s~~~i~~~~~s~~~~~l----~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~ 662 (848)
.+|++++|| . |++||+..++....++ .+..+... .+++.+ +..+...+|.+ |++||++...++...
T Consensus 143 s~I~s~~DL~k--Gk~i~v~~~~s~~~~~~~~~l~~~Gl~~~dv~~~~~-~~~~~~~al~~----G~vDa~~~~~p~~~~ 215 (341)
T 3un6_A 143 MHLNEFNNNGD--DYHFGIPHRYSTHYLLLEELRKQLKIKPGHFSYHEM-SPAEMPAALSE----HRITGYSVAEPFGAL 215 (341)
T ss_dssp CCGGGCCSSSS--CEEEEESCSSSHHHHHHHHHHHHTTCCTTSEEEEEC-CGGGHHHHHHT----TSCSEEEEETTHHHH
T ss_pred CCCCCHHHhCC--CCEEEECCCCCHHHHHHHHHHHHcCCCHHHeEEEEc-ChHHHHHHHHc----CCCCEEEecCCHHHH
Confidence 478899999 6 8899998754333322 12334332 244455 46788899999 899999998888776
Q ss_pred HHhcCC-cEEEeCCcc-ccCC-ceeeecCC----CC-----chHHHHHHHHhhhccCchHHHHHhhcc
Q 003093 663 FLSTRC-EFSIVGQVF-TKNG-WGFAFPRD----SP-----LAVDISTAILKLSENGDLQRIHDKWLL 718 (848)
Q Consensus 663 ~~~~~~-~l~~~~~~~-~~~~-~~~~~~k~----sp-----l~~~in~~i~~l~e~G~~~~~~~kw~~ 718 (848)
...+.. +.......+ ...+ ..++++++ .| +...+++++..+.+++.-.++..+|+.
T Consensus 216 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~a~~~a~~~~~~~~~~~~~~~~~~~ 283 (341)
T 3un6_A 216 GEKLGKGKTLKHGDDVIPDAYCCVLVLRGELLDQHKDVAQAFVQDYKKSGFKMNDRKQSVDIMTHHFK 283 (341)
T ss_dssp HHHSSCCEEEEEGGGTSTTCCCEEEEECHHHHHHCHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHSS
T ss_pred HHhcCCeEEEEeccccCCCCceEEEEECHHHHHHCHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhC
Confidence 666543 322222222 2222 45666654 34 566667777777776643366667665
No 85
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125}
Probab=97.24 E-value=0.00078 Score=70.41 Aligned_cols=78 Identities=9% Similarity=-0.009 Sum_probs=54.5
Q ss_pred CcceeeeeHHHHHHHHHhCCCCcceEEeeCCCCCCCCChhHHHHHHhcCeeeEEeec-eeee---cCceeeeeecccccc
Q 003093 397 SEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGD-IAII---TNRTKMADFTQPYIE 472 (848)
Q Consensus 397 ~~~~~G~~~dll~~i~~~l~~~~~~~~~~~~~~~~n~s~~~~i~~l~~g~~D~~~~~-~~~t---~~R~~~~dfs~p~~~ 472 (848)
+..+.|+.+.+-+-+.++.|+++++. +. +....++..|..|++|+++++ .... .+......+..++..
T Consensus 14 ~~~~~~~~va~~~g~~~~~Gl~v~~~--~~------~~~~~~~~~l~~G~~D~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 85 (302)
T 3ix1_A 14 NAVHTFLYVAIENGYFAEEGLDVDIV--FP------TNPTDPIQLTASGAIPLALSYQPDVILARSKDLPVVSVASVVRS 85 (302)
T ss_dssp CGGGHHHHHHHHTTHHHHTTEEEEEE--CC------SSTTHHHHHHHHTSCSEEEECHHHHHHHHHTTCCEEEEEEEECS
T ss_pred CcccHHHHHHHHcChHHHcCCcEEEe--cC------CCCchHHHHHHCCCCCEEecCHHHHHHHHHCCCCEEEEEEEecc
Confidence 44567888888888888999885554 32 234589999999999999886 2222 233445666667766
Q ss_pred cceEEEEecc
Q 003093 473 SGLVVVAPVR 482 (848)
Q Consensus 473 ~~~~~v~~~~ 482 (848)
.+..+++++.
T Consensus 86 ~~~~l~~~~~ 95 (302)
T 3ix1_A 86 PLNHVMFLAE 95 (302)
T ss_dssp CCEEEEEEGG
T ss_pred CCEEEEEECC
Confidence 7777777754
No 86
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=97.17 E-value=0.0042 Score=65.10 Aligned_cols=154 Identities=13% Similarity=0.066 Sum_probs=98.9
Q ss_pred CCeEEEEc-cCCchhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEeccCChHHHHHHHHHHHHHc--CcEEEEEEE
Q 003093 3 GQTVAIIG-PQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHY--GWREVIAIY 79 (848)
Q Consensus 3 ~~V~aiIG-p~~S~~~~ava~i~~~~~vP~Is~~at~p~ls~~~~p~f~r~~p~d~~q~~ai~~~~~~~--~w~~vaii~ 79 (848)
++|++||. |..+.........+.+.++|+|.+....+. .+.+..+..++...+..+++++... |.+++++|.
T Consensus 56 ~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~-----~~~~~~V~~d~~~~g~~a~~~L~~~~~G~~~I~~i~ 130 (313)
T 2h3h_A 56 EGVNGIAIAPSDPTAVIPTIKKALEMGIPVVTLDTDSPD-----SGRYVYIGTDNYQAGYTAGLIMKELLGGKGKVVIGT 130 (313)
T ss_dssp TTCSEEEECCSSTTTTHHHHHHHHHTTCCEEEESSCCTT-----SCCSCEEECCHHHHHHHHHHHHHHHHTSCSEEEEEE
T ss_pred cCCCEEEEeCCChHHHHHHHHHHHHCCCeEEEeCCCCCC-----cceeEEECcCHHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 46777764 544443333445566789999987654321 1233445677777888888887776 999999998
Q ss_pred Ec--CCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcC--CCeEEEEEccCCcHHHHHHHHHHcCCC
Q 003093 80 VD--DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALT--ESRIIVVHTHYNRGPVVFHVAQYLGML 155 (848)
Q Consensus 80 ~d--d~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~--~~~viv~~~~~~~~~~~~~~a~~~g~~ 155 (848)
.+ ........+.|.+.+++.|+++...... ..+..+....+.++.+. ++++|+.. +...+..++++++++|..
T Consensus 131 ~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~ai~~~-~d~~a~g~~~al~~~G~p 207 (313)
T 2h3h_A 131 GSLTAMNSLQRIQGFKDAIKDSEIEIVDILND--EEDGARAVSLAEAALNAHPDLDAFFGV-YAYNGPAQALVVKNAGKV 207 (313)
T ss_dssp SCSSCHHHHHHHHHHHHHHTTSSCEEEEEEEC--SSCHHHHHHHHHHHHHHCTTCCEEEEC-STTHHHHHHHHHHHTTCT
T ss_pred CCCCCccHHHHHHHHHHHhcCCCCEEEEeecC--CCCHHHHHHHHHHHHHHCcCceEEEEc-CCCccHHHHHHHHHcCCC
Confidence 54 3344566789999999999987643222 22334445555555543 45776654 455777899999999952
Q ss_pred CCCeEEEecC
Q 003093 156 GTGYVWIATS 165 (848)
Q Consensus 156 ~~~~~wi~~~ 165 (848)
.+...++.+
T Consensus 208 -~dv~vvg~d 216 (313)
T 2h3h_A 208 -GKVKIVCFD 216 (313)
T ss_dssp -TTSEEEEEC
T ss_pred -CCeEEEEeC
Confidence 334444444
No 87
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=97.13 E-value=0.0014 Score=67.33 Aligned_cols=152 Identities=10% Similarity=-0.015 Sum_probs=93.5
Q ss_pred CCCeEEEEccCCchhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEeccCChHHHHHHHHHHHHHcCcEEEEEEEEc
Q 003093 2 EGQTVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVD 81 (848)
Q Consensus 2 ~~~V~aiIGp~~S~~~~ava~i~~~~~vP~Is~~at~p~ls~~~~p~f~r~~p~d~~q~~ai~~~~~~~~w~~vaii~~d 81 (848)
+++|++||........ .....+.+.++|+|......+ + +..+..++...+..+++++...|-++++++..+
T Consensus 53 ~~~vdgiI~~~~~~~~-~~~~~~~~~~iPvV~~~~~~~-------~-~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~ 123 (276)
T 2h0a_A 53 AYLTDGLILASYDLTE-RFEEGRLPTERPVVLVDAQNP-------R-YDSVYLDNRLGGRLAGAYLARFPGPIFAIAVEE 123 (276)
T ss_dssp -CCCSEEEEESCCCC-------CCSCSSCEEEESSCCT-------T-SEEEEECSHHHHHHHHHHHTTSSSCEEEEEECC
T ss_pred hCCCCEEEEecCCCCH-HHHHHHhhcCCCEEEEeccCC-------C-CCEEEEccHHHHHHHHHHHHHcCCCeEEEEecC
Confidence 3567777753332222 333455678999998754322 1 345566777778888898888899999999855
Q ss_pred C------CCcc-chHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcC--CCeEEEEEccCCcHHHHHHHHHHc
Q 003093 82 D------DHGR-NGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALT--ESRIIVVHTHYNRGPVVFHVAQYL 152 (848)
Q Consensus 82 d------~~g~-~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~--~~~viv~~~~~~~~~~~~~~a~~~ 152 (848)
. .... ...+.|.+.+++.|+.+.....+....+..+-...+.++.+. .+++|+ +.+...+..+++++++.
T Consensus 124 ~~~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~ 202 (276)
T 2h0a_A 124 EPDRAFRRTVFAERMAGFQEALKEAGRPFSPDRLYITRHSQEGGRLALRHFLEKASPPLNVF-AGADQVALGVLEEAVRL 202 (276)
T ss_dssp SCCC---CCHHHHHHHHHHHHHHHTTCCCCGGGEEEECSSHHHHHHHHHHHHTTCCSSEEEE-CSSHHHHHHHHHHHHTT
T ss_pred cccccccchhHHHHHHHHHHHHHHcCCCCChHHeeecCCChHHHHHHHHHHHhCCCCCCEEE-ECCcHHHHHHHHHHHHc
Confidence 3 2445 667899999999997643111111111234444555555543 477766 45556677899999999
Q ss_pred CCCCCCeEEEe
Q 003093 153 GMLGTGYVWIA 163 (848)
Q Consensus 153 g~~~~~~~wi~ 163 (848)
|+..++-+.+.
T Consensus 203 g~~vP~di~vv 213 (276)
T 2h0a_A 203 GLTPGRDVRVL 213 (276)
T ss_dssp SCTTTTSEEEE
T ss_pred CCCCCCCeEEE
Confidence 98755544443
No 88
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=97.01 E-value=0.0019 Score=66.96 Aligned_cols=155 Identities=10% Similarity=-0.042 Sum_probs=96.4
Q ss_pred CCeEEEEccCCchhHHHHHHhhcc-CCccEEecccCCCCCCCCCCCceEeccCChHHHHHHHHHHHHHcCcEEEEEEEEc
Q 003093 3 GQTVAIIGPQDAVTSHVVSHVANE-LQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVD 81 (848)
Q Consensus 3 ~~V~aiIGp~~S~~~~ava~i~~~-~~vP~Is~~at~p~ls~~~~p~f~r~~p~d~~q~~ai~~~~~~~~w~~vaii~~d 81 (848)
++|++||....+.....+ ..+.+ .++|+|......+ + +.+..+..++...+..+++++...|.++++++..+
T Consensus 76 ~~vdgii~~~~~~~~~~~-~~l~~~~~iPvV~~~~~~~---~---~~~~~V~~d~~~~~~~a~~~l~~~G~~~I~~i~~~ 148 (296)
T 3brq_A 76 LRCDAIMIYPRFLSVDEI-DDIIDAHSQPIMVLNRRLR---K---NSSHSVWCDHKQTSFNAVAELINAGHQEIAFLTGS 148 (296)
T ss_dssp TTCSEEEEECSSSCHHHH-HHHHHTCSSCEEEESCCCS---S---SGGGEECCCHHHHHHHHHHHHHHTTCCSEEEECCC
T ss_pred cCCCEEEEecCCCChHHH-HHHHhcCCCCEEEEccccC---C---CCCCEEEEchHHHHHHHHHHHHHCCCceEEEEcCC
Confidence 568887764333222333 33455 8999998754322 1 23344566677777888888877899999999855
Q ss_pred CC--CccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhc--CCCeEEEEEccCCcHHHHHHHHHHcCCCCC
Q 003093 82 DD--HGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVAL--TESRIIVVHTHYNRGPVVFHVAQYLGMLGT 157 (848)
Q Consensus 82 d~--~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~--~~~~viv~~~~~~~~~~~~~~a~~~g~~~~ 157 (848)
.. .+....+.|.+++++.|+.+.....+....+..+-...+.++.+ .++++|+.. +...+..+++++++.|+..+
T Consensus 149 ~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~-~d~~a~g~~~al~~~g~~vP 227 (296)
T 3brq_A 149 MDSPTSIERLAGYKDALAQHGIALNEKLIANGKWTPASGAEGVEMLLERGAKFSALVAS-NDDMAIGAMKALHERGVAVP 227 (296)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCCCCGGGEECCCSSHHHHHHHHHHHHTC--CCSEEEES-SHHHHHHHHHHHHHHTCCTT
T ss_pred CCCccHHHHHHHHHHHHHHcCCCCChhhEEeCCCChhHHHHHHHHHHhCCCCCCEEEEC-ChHHHHHHHHHHHHcCCCCC
Confidence 32 45566788999999999765422122222233444455566543 357877754 44567788999999998755
Q ss_pred Ce-EEEecC
Q 003093 158 GY-VWIATS 165 (848)
Q Consensus 158 ~~-~wi~~~ 165 (848)
+- ..++.+
T Consensus 228 ~di~vvg~d 236 (296)
T 3brq_A 228 EQVSVIGFD 236 (296)
T ss_dssp TTCEEEEES
T ss_pred CceEEEeec
Confidence 43 344433
No 89
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=96.94 E-value=0.0011 Score=68.55 Aligned_cols=148 Identities=8% Similarity=-0.070 Sum_probs=92.3
Q ss_pred CCeEEEEccCCchhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEeccCChHHHHHHHHHHHHHcCcEEEEEEEEcC
Q 003093 3 GQTVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDD 82 (848)
Q Consensus 3 ~~V~aiIGp~~S~~~~ava~i~~~~~vP~Is~~at~p~ls~~~~p~f~r~~p~d~~q~~ai~~~~~~~~w~~vaii~~dd 82 (848)
++|++||..........+..+ .++|+|......+. +.+..+..++...+..+++++...|-++++++....
T Consensus 62 ~~vdgiI~~~~~~~~~~~~~l---~~iPvV~~~~~~~~------~~~~~V~~d~~~~g~~a~~~L~~~G~~~I~~i~~~~ 132 (288)
T 2qu7_A 62 QNVSAIILVPVKSKFQMKREW---LKIPIMTLDRELES------TSLPSITVDNEEAAYIATKRVLESTCKEVGLLLANP 132 (288)
T ss_dssp TTEEEEEECCSSSCCCCCGGG---GGSCEEEESCCCSS------CCCCEEEECHHHHHHHHHHHHHTSSCCCEEEEECCT
T ss_pred cCccEEEEecCCCChHHHHHh---cCCCEEEEecccCC------CCCCEEEECcHHHHHHHHHHHHHcCCCcEEEEecCC
Confidence 578888865443222222233 78999987554321 234456677777888888988778999999998543
Q ss_pred C--CccchHHHHHHHHhccCcEEEEeeec--CCCC----ChHHHHHHHHHHhcCCCeEEEEEccCCcHHHHHHHHHHcCC
Q 003093 83 D--HGRNGIAALGDTLAAKRCRISFKAPL--SVEA----TEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGM 154 (848)
Q Consensus 83 ~--~g~~~~~~l~~~l~~~g~~v~~~~~~--~~~~----~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~~~~~a~~~g~ 154 (848)
. ......+.|.+++++.|+.+.....+ .... +..+-...+.++.+.++++|+.. +...+..++++++++|+
T Consensus 133 ~~~~~~~R~~gf~~~l~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ai~~~-~d~~a~g~~~al~~~g~ 211 (288)
T 2qu7_A 133 NISTTIGRKNGYNKAISEFDLNVNPSLIHYSDQQLGTNAQIYSGYEATKTLLSKGIKGIVAT-NHLLLLGALQAIKESEK 211 (288)
T ss_dssp TSHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSSCSHHHHHHHHHHHHHHHHHTTCCEEEEC-SHHHHHHHHHHHHHSSC
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCcceEEeccCCccccCCHHHHHHHHHHHHhcCCCEEEEC-CcHHHHHHHHHHHHhCC
Confidence 2 34566788999999999765321111 1111 11222333444433378887754 34467778999999998
Q ss_pred CCCCeE
Q 003093 155 LGTGYV 160 (848)
Q Consensus 155 ~~~~~~ 160 (848)
..++-+
T Consensus 212 ~vP~di 217 (288)
T 2qu7_A 212 EIKKDV 217 (288)
T ss_dssp CBTTTB
T ss_pred CCCCce
Confidence 655433
No 90
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=96.82 E-value=0.014 Score=60.71 Aligned_cols=155 Identities=11% Similarity=-0.039 Sum_probs=94.9
Q ss_pred CCeEEEE-ccCCchhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEeccCChHHHHHHHHHHHHH-cCcE-EEEEEE
Q 003093 3 GQTVAII-GPQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDH-YGWR-EVIAIY 79 (848)
Q Consensus 3 ~~V~aiI-Gp~~S~~~~ava~i~~~~~vP~Is~~at~p~ls~~~~p~f~r~~p~d~~q~~ai~~~~~~-~~w~-~vaii~ 79 (848)
++|++|| .|..+.........+...++|+|...... .. .+.+..+..++...+..+++++.. .|-+ +++++.
T Consensus 60 ~~vdgiii~~~~~~~~~~~~~~~~~~~ipvV~~~~~~--~~---~~~~~~v~~d~~~~g~~a~~~l~~~~g~~~~i~~i~ 134 (303)
T 3d02_A 60 RKVDAITIVPNDANVLEPVFKKARDAGIVVLTNESPG--QP---SANWDVEIIDNEKFAAEYVEHMAKRMGGKGGYVIYV 134 (303)
T ss_dssp TTCSEEEECCSCHHHHHHHHHHHHHTTCEEEEESCTT--CT---TCSEEEESSCHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred cCCCEEEEecCChHHHHHHHHHHHHCCCeEEEEecCC--CC---CCceEEEecCHHHHHHHHHHHHHHHhCcCceEEEEe
Confidence 4677765 55554444444556667899999876531 11 133445667777778888888766 7887 999887
Q ss_pred EcC--CCccchHHHHHHHHhccC--cEEEEeeecCCCCChHHHHHHHHHHhcCC--CeEEEEEccCCcHHHHHHHHHHcC
Q 003093 80 VDD--DHGRNGIAALGDTLAAKR--CRISFKAPLSVEATEDEITDLLVKVALTE--SRIIVVHTHYNRGPVVFHVAQYLG 153 (848)
Q Consensus 80 ~dd--~~g~~~~~~l~~~l~~~g--~~v~~~~~~~~~~~~~d~~~~l~~i~~~~--~~viv~~~~~~~~~~~~~~a~~~g 153 (848)
... .......+.|.+.+++.+ +++... .+....+..+....+.++.+.. +++|+. .+...+..++++++++|
T Consensus 135 g~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g 212 (303)
T 3d02_A 135 GSLTVPQHNLWADLLVKYQKEHYPDMHEVTR-RMPVAESVDDSRRTTLDLMKTYPDLKAVVS-FGSNGPIGAGRAVKEKR 212 (303)
T ss_dssp SCSSCHHHHHHHHHHHHHHHHHCTTEEESSS-CBSCTTCHHHHHHHHHHHHHHCTTEEEEEE-SSTTHHHHHHHHHHHTT
T ss_pred cCCCCccHHHHHHHHHHHHHhhCCCCEEEEe-ecCCCCCHHHHHHHHHHHHHhCCCCCEEEE-eCCcchhHHHHHHHhcC
Confidence 432 233456788999998765 444321 1121223345555666655443 455444 44567778999999999
Q ss_pred CCCCCeEEEecC
Q 003093 154 MLGTGYVWIATS 165 (848)
Q Consensus 154 ~~~~~~~wi~~~ 165 (848)
+. .+...++.+
T Consensus 213 ~~-~dv~vig~d 223 (303)
T 3d02_A 213 AK-NKVAVYGMM 223 (303)
T ss_dssp CT-TTCEEEECC
T ss_pred CC-CCeEEEEeC
Confidence 85 344444443
No 91
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=96.81 E-value=0.0048 Score=63.71 Aligned_cols=151 Identities=7% Similarity=0.007 Sum_probs=92.4
Q ss_pred CCeEEEEccCCchhHHHHHHhhcc-CCccEEecccCCCCCCCCCCCceEeccCChHHHHHHHHHHHHHcCcEEEEEEEEc
Q 003093 3 GQTVAIIGPQDAVTSHVVSHVANE-LQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVD 81 (848)
Q Consensus 3 ~~V~aiIGp~~S~~~~ava~i~~~-~~vP~Is~~at~p~ls~~~~p~f~r~~p~d~~q~~ai~~~~~~~~w~~vaii~~d 81 (848)
++|++||-....... .+.....+ .++|+|......+. . ++...+..++...+..+++++...|.++++++..+
T Consensus 62 ~~vdgii~~~~~~~~-~~~~~l~~~~~iPvV~~~~~~~~---~--~~~~~V~~d~~~~~~~~~~~L~~~G~~~i~~i~~~ 135 (289)
T 1dbq_A 62 KRVDGLLVMCSEYPE-PLLAMLEEYRHIPMVVMDWGEAK---A--DFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGP 135 (289)
T ss_dssp TTCSEEEEECSCCCH-HHHHHHHHTTTSCEEEEECSSCC---S--SSCEEEEECHHHHHHHHHHHHHHTTCCSEEEECCC
T ss_pred CCCCEEEEEeccCCH-HHHHHHHhccCCCEEEEccCCCc---c--CcCCEEEeCcHHHHHHHHHHHHHCCCCeEEEEecC
Confidence 467777743222211 22333333 79999987654321 1 22334566777778888898878899999999744
Q ss_pred --CCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhc--CCCeEEEEEccCCcHHHHHHHHHHcCCCCC
Q 003093 82 --DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVAL--TESRIIVVHTHYNRGPVVFHVAQYLGMLGT 157 (848)
Q Consensus 82 --d~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~--~~~~viv~~~~~~~~~~~~~~a~~~g~~~~ 157 (848)
........+.|.+++++.|+.+.....+....+..+....+.++.+ .++++|+.. +...+..+++++++.|+..+
T Consensus 136 ~~~~~~~~R~~g~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~-~d~~a~g~~~al~~~G~~vP 214 (289)
T 1dbq_A 136 LERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVFCG-GDIMAMGALCAADEMGLRVP 214 (289)
T ss_dssp ------CHHHHHHHHHHHHTTCCCCGGGBCCCCSSHHHHHHHHHHHHTSSSCCSEEEES-CHHHHHHHHHHHHHTTCCTT
T ss_pred CccccHHHHHHHHHHHHHHCCCCCChHHeEeCCCCHHHHHHHHHHHHhCCCCCCEEEEC-CcHHHHHHHHHHHHcCCCCC
Confidence 3355677889999999999765322122222233344455555544 357777654 34567779999999998655
Q ss_pred CeE
Q 003093 158 GYV 160 (848)
Q Consensus 158 ~~~ 160 (848)
+-+
T Consensus 215 ~di 217 (289)
T 1dbq_A 215 QDV 217 (289)
T ss_dssp TTC
T ss_pred Cce
Confidence 433
No 92
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=96.80 E-value=0.0031 Score=65.54 Aligned_cols=149 Identities=9% Similarity=0.013 Sum_probs=99.5
Q ss_pred CCeEEEE-ccCCchhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEeccCChHHHHHHHHHHHHHcC--cEEEEEEE
Q 003093 3 GQTVAII-GPQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYG--WREVIAIY 79 (848)
Q Consensus 3 ~~V~aiI-Gp~~S~~~~ava~i~~~~~vP~Is~~at~p~ls~~~~p~f~r~~p~d~~q~~ai~~~~~~~~--w~~vaii~ 79 (848)
++|++|| .|..+.........+.+.++|+|......+.. ...+.+..+..++...+..+++++...| -++++++.
T Consensus 60 ~~vdgiii~~~~~~~~~~~~~~~~~~giPvV~~~~~~~~~--~~~~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~i~~i~ 137 (297)
T 3rot_A 60 TYPSGIATTIPSDTAFSKSLQRANKLNIPVIAVDTRPKDK--TKNPYLVFLGSDNLLAGKKLGEKALELTPSAKRALVLN 137 (297)
T ss_dssp TCCSEEEECCCCSSTTHHHHHHHHHHTCCEEEESCCCSCT--TTSCCSCEEECCHHHHHHHHHHHHHHHCTTCCEEEEEE
T ss_pred cCCCEEEEeCCCHHHHHHHHHHHHHCCCCEEEEcCCCccc--cccCcceEEccChHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 4677666 66665555555667777899999876554321 1123455567788888889999887777 89999997
Q ss_pred EcCC--CccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcC--CCeEEEEEccCCcHHHHHHHHHHcCCC
Q 003093 80 VDDD--HGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALT--ESRIIVVHTHYNRGPVVFHVAQYLGML 155 (848)
Q Consensus 80 ~dd~--~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~--~~~viv~~~~~~~~~~~~~~a~~~g~~ 155 (848)
.+.. ......+.|.+++++.|+++.... . ..........+.++... ++++|+. .+...+..++++++++|+.
T Consensus 138 g~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~--~-~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~A~g~~~al~~~g~~ 213 (297)
T 3rot_A 138 PQPGHIGLEKRAYGIKTILQDKGIFFEELD--V-GTDPNQVQSRVKSYFKIHPETNIIFC-LTSQALDPLGQMLLHPDRY 213 (297)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHTTCEEEEEE--C-CSCHHHHHHHHHHHHHHCTTCCEEEE-SSHHHHHHHHHHHHSHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHhcCCeEEEee--c-CCChHHHHHHHHHHHHhCCCCCEEEE-cCCcchHHHHHHHHhcCCc
Confidence 4433 334567899999999999987654 1 22334445555554433 4566554 4455667789999999975
Q ss_pred CC
Q 003093 156 GT 157 (848)
Q Consensus 156 ~~ 157 (848)
.+
T Consensus 214 vP 215 (297)
T 3rot_A 214 DF 215 (297)
T ss_dssp TC
T ss_pred cC
Confidence 44
No 93
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=96.70 E-value=0.014 Score=61.29 Aligned_cols=154 Identities=11% Similarity=0.028 Sum_probs=93.5
Q ss_pred CCeEEEE-ccCCchhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEeccCChHHHHHHHHHHHHH---cCcEEEEEE
Q 003093 3 GQTVAII-GPQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDH---YGWREVIAI 78 (848)
Q Consensus 3 ~~V~aiI-Gp~~S~~~~ava~i~~~~~vP~Is~~at~p~ls~~~~p~f~r~~p~d~~q~~ai~~~~~~---~~w~~vaii 78 (848)
++|++|| .|..+.....+...+.+.+||+|.+....+ .. .+..+....++...+..+++++.. .|-+++++|
T Consensus 59 ~~vdgiii~~~~~~~~~~~~~~a~~~gipvV~~d~~~~---~~-~~~~~v~~~D~~~~g~~~~~~L~~~~~~g~~~i~~i 134 (316)
T 1tjy_A 59 QGYDAIIVSAVSPDGLCPALKRAMQRGVKILTWDSDTK---PE-CRSYYINQGTPKQLGSMLVEMAAHQVDKEKAKVAFF 134 (316)
T ss_dssp TTCSEEEECCSSSSTTHHHHHHHHHTTCEEEEESSCCC---GG-GCSEEEESCCHHHHHHHHHHHHHHHHCSSSEEEEEE
T ss_pred cCCCEEEEeCCCHHHHHHHHHHHHHCcCEEEEecCCCC---CC-CceEEEecCCHHHHHHHHHHHHHHHcCCCCCEEEEE
Confidence 5677744 666665545555667788999998754321 11 112232256666677888888655 478999999
Q ss_pred EEc--CCCccchHHHHHHHHhcc--CcEEEEeeecCCCCChHHHHHHHHHHhcC--CCeEEEEEccCCcHHHHHHHHHHc
Q 003093 79 YVD--DDHGRNGIAALGDTLAAK--RCRISFKAPLSVEATEDEITDLLVKVALT--ESRIIVVHTHYNRGPVVFHVAQYL 152 (848)
Q Consensus 79 ~~d--d~~g~~~~~~l~~~l~~~--g~~v~~~~~~~~~~~~~d~~~~l~~i~~~--~~~viv~~~~~~~~~~~~~~a~~~ 152 (848)
... +.......+.+.+.+++. ++++.....- ..+..+....+.++... ++++|+. .+...+..++++++++
T Consensus 135 ~g~~~~~~~~~r~~g~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ll~~~~~~~aI~~-~nD~~A~g~~~al~~~ 211 (316)
T 1tjy_A 135 YSSPTVTDQNQWVKEAKAKISQEHPGWEIVTTQFG--YNDATKSLQTAEGIIKAYPDLDAIIA-PDANALPAAAQAAENL 211 (316)
T ss_dssp ESCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEC--TTCHHHHHHHHHHHHHHCSSCCEEEE-CSTTHHHHHHHHHHHT
T ss_pred EcCCCChhHHHHHHHHHHHHHhhCCCcEEEEeccC--CCCHHHHHHHHHHHHHhCCCCCEEEE-CCCccHHHHHHHHHHc
Confidence 843 233455677888888776 5665543221 22334444555555443 4565554 4456777899999999
Q ss_pred CCCCCCeEEEecC
Q 003093 153 GMLGTGYVWIATS 165 (848)
Q Consensus 153 g~~~~~~~wi~~~ 165 (848)
| . .+...++.+
T Consensus 212 G-~-~dv~VvG~D 222 (316)
T 1tjy_A 212 K-R-NNLAIVGFS 222 (316)
T ss_dssp T-C-CSCEEEEBC
T ss_pred C-C-CCEEEEEeC
Confidence 9 5 444445444
No 94
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=96.61 E-value=0.0086 Score=61.78 Aligned_cols=156 Identities=12% Similarity=0.091 Sum_probs=94.7
Q ss_pred CCCeEEEEccCCchhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEeccCChHHHHHHHHHHHHHcCcEEEEEEEEc
Q 003093 2 EGQTVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVD 81 (848)
Q Consensus 2 ~~~V~aiIGp~~S~~~~ava~i~~~~~vP~Is~~at~p~ls~~~~p~f~r~~p~d~~q~~ai~~~~~~~~w~~vaii~~d 81 (848)
+++|++||-......... ...+...++|+|......+ .. .+..+..++...+..+++++...|-+++++|...
T Consensus 62 ~~~vdgiIi~~~~~~~~~-~~~l~~~~iPvV~~~~~~~---~~---~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~ 134 (287)
T 3bbl_A 62 SGNVDGFVLSSINYNDPR-VQFLLKQKFPFVAFGRSNP---DW---DFAWVDIDGTAGTRQAVEYLIGRGHRRIAILAWP 134 (287)
T ss_dssp TTCCSEEEECSCCTTCHH-HHHHHHTTCCEEEESCCST---TC---CCCEEEECHHHHHHHHHHHHHHHTCCCEEEEECC
T ss_pred cCCCCEEEEeecCCCcHH-HHHHHhcCCCEEEECCcCC---CC---CCCEEEeccHHHHHHHHHHHHHCCCCeEEEEeCC
Confidence 356888774332222222 3344568999998755322 11 2234556677778888888877799999999854
Q ss_pred CC--CccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhc-C---CCeEEEEEccCCcHHHHHHHHHHcCCC
Q 003093 82 DD--HGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVAL-T---ESRIIVVHTHYNRGPVVFHVAQYLGML 155 (848)
Q Consensus 82 d~--~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~-~---~~~viv~~~~~~~~~~~~~~a~~~g~~ 155 (848)
.. ......+.|.+++++.|+.+.....+....+..+-...+.++.+ . ++++|+.. +...+..+++++++.|+.
T Consensus 135 ~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~~~-~d~~a~g~~~al~~~G~~ 213 (287)
T 3bbl_A 135 EDSRVGNDRLQGYLEAMQTAQLPIETGYILRGEGTFEVGRAMTLHLLDLSPERRPTAIMTL-NDTMAIGAMAAARERGLT 213 (287)
T ss_dssp TTCHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHHHTSCTTTSCSEEEES-SHHHHHHHHHHHHHTTCC
T ss_pred cccccHHHHHHHHHHHHHHcCCCCChhhEEeCCCCHHHHHHHHHHHHhhCCCCCCcEEEEC-CcHHHHHHHHHHHHcCCC
Confidence 32 34556788999999999765321111111223344445555544 3 56777653 445677799999999987
Q ss_pred CCC-eEEEecC
Q 003093 156 GTG-YVWIATS 165 (848)
Q Consensus 156 ~~~-~~wi~~~ 165 (848)
.++ ...++.|
T Consensus 214 vP~di~vig~d 224 (287)
T 3bbl_A 214 IGTDLAIIGFD 224 (287)
T ss_dssp BTTTBEEEEES
T ss_pred CCCCEEEEEEC
Confidence 554 3344434
No 95
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=96.60 E-value=0.013 Score=60.36 Aligned_cols=149 Identities=10% Similarity=0.012 Sum_probs=92.6
Q ss_pred CCCeEEEEccCCchhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEeccCChHHHHHHHHHHHHHcCcEEEEEEEEc
Q 003093 2 EGQTVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVD 81 (848)
Q Consensus 2 ~~~V~aiIGp~~S~~~~ava~i~~~~~vP~Is~~at~p~ls~~~~p~f~r~~p~d~~q~~ai~~~~~~~~w~~vaii~~d 81 (848)
+++|++||-.........+..+ . .++|+|......+ + +.+..+..++...+..+++++...|-+++++|...
T Consensus 62 ~~~vdgiI~~~~~~~~~~~~~l-~-~~iPvV~~~~~~~---~---~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~ 133 (285)
T 3c3k_A 62 GKMVDGVITMDALSELPELQNI-I-GAFPWVQCAEYDP---L---STVSSVSIDDVAASEYVVDQLVKSGKKRIALINHD 133 (285)
T ss_dssp TTCCSEEEECCCGGGHHHHHHH-H-TTSSEEEESSCCT---T---SSSCEEECCHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred hCCCCEEEEeCCCCChHHHHHH-h-cCCCEEEEccccC---C---CCCCEEEEChHHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 3578888764332222333333 4 8999998755332 1 12334556677777888888877799999999855
Q ss_pred CC--CccchHHHHHHHHhccCcEEE-EeeecCCCCChHHHHHHHHH--HhcC--CCeEEEEEccCCcHHHHHHHHHHcCC
Q 003093 82 DD--HGRNGIAALGDTLAAKRCRIS-FKAPLSVEATEDEITDLLVK--VALT--ESRIIVVHTHYNRGPVVFHVAQYLGM 154 (848)
Q Consensus 82 d~--~g~~~~~~l~~~l~~~g~~v~-~~~~~~~~~~~~d~~~~l~~--i~~~--~~~viv~~~~~~~~~~~~~~a~~~g~ 154 (848)
.. ......+.|.+++++.|+.+. ....+. ..+-...+.+ +.+. ++++|+. .+...+..+++++++.|+
T Consensus 134 ~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~A~g~~~al~~~g~ 208 (285)
T 3c3k_A 134 LAYQYAQHRESGYLNRLKFHGLDYSRISYAEN----LDYMAGKLATFSLLKSAVKPDAIFA-ISDVLAAGAIQALTESGL 208 (285)
T ss_dssp TTSHHHHHHHHHHHHHHHHHTCCCCEEEECSS----SSHHHHHHHHHHHHSSSSCCSEEEE-SSHHHHHHHHHHHHHTTC
T ss_pred CccccHHHHHHHHHHHHHHcCCCceEeecCCC----hHHHHHHHHHHHHHcCCCCCeEEEE-CCHHHHHHHHHHHHHcCC
Confidence 33 345567889999999987654 111121 1233344555 4443 5777765 344567779999999998
Q ss_pred CCCCeEEEe
Q 003093 155 LGTGYVWIA 163 (848)
Q Consensus 155 ~~~~~~wi~ 163 (848)
..++-+-+.
T Consensus 209 ~vP~di~vv 217 (285)
T 3c3k_A 209 SIPQDVAVV 217 (285)
T ss_dssp CTTTTCEEE
T ss_pred CCCCceEEE
Confidence 755444443
No 96
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=96.60 E-value=0.0051 Score=63.62 Aligned_cols=149 Identities=13% Similarity=0.024 Sum_probs=90.0
Q ss_pred CCCeEEEEccCCchhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEeccCChHHHHHHHHHHHHHcCcEEEEEEEEc
Q 003093 2 EGQTVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVD 81 (848)
Q Consensus 2 ~~~V~aiIGp~~S~~~~ava~i~~~~~vP~Is~~at~p~ls~~~~p~f~r~~p~d~~q~~ai~~~~~~~~w~~vaii~~d 81 (848)
+++|++||-....... .....+.+.++|+|......+. + +..+..++...+..+++++...|-++++++..+
T Consensus 63 ~~~vdgiI~~~~~~~~-~~~~~l~~~~iPvV~~~~~~~~------~-~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~ 134 (290)
T 3clk_A 63 ERPVMGILLLSIALTD-DNLQLLQSSDVPYCFLSMGFDD------D-RPFISSDDEDIGYQATNLLINEGHRQIGIAGID 134 (290)
T ss_dssp SSCCSEEEEESCC-----CHHHHHCC--CEEEESCC--C------C-SCEEECCHHHHHHHHHHHHHTTTCCSEEEESCC
T ss_pred hcCCCEEEEecccCCH-HHHHHHHhCCCCEEEEcCCCCC------C-CCEEEeChHHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 3567777743322222 2233445689999987543321 2 344567777778888898877899999999754
Q ss_pred --CCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhc-CCCeEEEEEccCCcHHHHHHHHHHcCCCCCC
Q 003093 82 --DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVAL-TESRIIVVHTHYNRGPVVFHVAQYLGMLGTG 158 (848)
Q Consensus 82 --d~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~-~~~~viv~~~~~~~~~~~~~~a~~~g~~~~~ 158 (848)
........+.|.+++++.|+.+.....+....+..+-...+.++.+ .++++|+.. +...+..+++++++.|+..++
T Consensus 135 ~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ai~~~-~d~~a~g~~~al~~~g~~vP~ 213 (290)
T 3clk_A 135 QYPYTGRKRLAGYKKALKEANIAINQEWIKPGDYSYTSGEQAMKAFGKNTDLTGIIAA-SDMTAIGILNQASSFGIEVPK 213 (290)
T ss_dssp CCTTTHHHHHHHHHHHHHHTTCCCCGGGEECCCSSHHHHHHHHHHHCTTCCCSEEEES-SHHHHHHHHHHHHHTTCCTTT
T ss_pred CCCcchHHHHHHHHHHHHHcCCCCCcceEEcCCCChhhHHHHHHHHhccCCCcEEEEC-CcHHHHHHHHHHHHcCCCCCC
Confidence 3345667889999999999765311111112223334445555543 457777653 445677789999999986554
Q ss_pred e
Q 003093 159 Y 159 (848)
Q Consensus 159 ~ 159 (848)
-
T Consensus 214 d 214 (290)
T 3clk_A 214 D 214 (290)
T ss_dssp T
T ss_pred c
Confidence 3
No 97
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=96.59 E-value=0.022 Score=60.07 Aligned_cols=148 Identities=7% Similarity=-0.021 Sum_probs=94.6
Q ss_pred eEEEEccCCch-hHHHHHHhhccCCccEEecccCCCCCCCCCC--CceEeccCChHHHHHHHHHHHHH--cCcEEEEEEE
Q 003093 5 TVAIIGPQDAV-TSHVVSHVANELQVPLLSFSATDPTLSSLQF--PYFVRTTQSDQYQMAAIAEIVDH--YGWREVIAIY 79 (848)
Q Consensus 5 V~aiIGp~~S~-~~~ava~i~~~~~vP~Is~~at~p~ls~~~~--p~f~r~~p~d~~q~~ai~~~~~~--~~w~~vaii~ 79 (848)
|++||...... ........+.+.++|+|......+..+...+ +.+..+..++...+..+++++.. .|.+++++|.
T Consensus 64 vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~~G~~~I~~i~ 143 (332)
T 2rjo_A 64 NLVLNVDPNDSADARVIVEACSKAGAYVTTIWNKPKDLHPWDYNPNYVAHLSYDGVAYGEETATQLFKSMGGKGGVVALG 143 (332)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHTCEEEEESCCCTTCCGGGGTTTEEEEEECCHHHHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred CCEEEEeCCCHHHHHHHHHHHHHCCCeEEEECCCCCcccchhcccceeEEEccChHHHHHHHHHHHHHHcCCCCeEEEEE
Confidence 88887643332 2223344555679999987654332111112 34566777888888888888766 6999999998
Q ss_pred EcCC--CccchHHHHHHHHhcc-CcEEEEeeecCCCCChHHHHHHHHHHhcC---CCeEEEEEccCCcHHHHHHHHHHcC
Q 003093 80 VDDD--HGRNGIAALGDTLAAK-RCRISFKAPLSVEATEDEITDLLVKVALT---ESRIIVVHTHYNRGPVVFHVAQYLG 153 (848)
Q Consensus 80 ~dd~--~g~~~~~~l~~~l~~~-g~~v~~~~~~~~~~~~~d~~~~l~~i~~~---~~~viv~~~~~~~~~~~~~~a~~~g 153 (848)
.... ......+.|.+++++. |+++.... ....+..+....+.++.+. ++++|+. .+...+..++++++++|
T Consensus 144 g~~~~~~~~~R~~Gf~~al~~~pgi~~~~~~--~~~~~~~~~~~~~~~ll~~~~~~~~aI~~-~nd~~A~g~~~al~~~G 220 (332)
T 2rjo_A 144 GIFSNVPAIERKAGLDAALKKFPGIQLLDFQ--VADWNSQKAFPIMQAWMTRFNSKIKGVWA-ANDDMALGAIEALRAEG 220 (332)
T ss_dssp CCTTCHHHHHHHHHHHHHHHTCTTEEEEEEE--ECTTCHHHHHHHHHHHHHHHGGGEEEEEE-SSHHHHHHHHHHHHHTT
T ss_pred CCCCCccHHHHHHHHHHHHHhCCCcEEEeec--cCCCCHHHHHHHHHHHHHhcCCCeeEEEE-CCCchHHHHHHHHHHcC
Confidence 5432 3456678899999999 98875432 2122334444455555433 4666654 34456777999999999
Q ss_pred CC
Q 003093 154 ML 155 (848)
Q Consensus 154 ~~ 155 (848)
+.
T Consensus 221 ~~ 222 (332)
T 2rjo_A 221 LA 222 (332)
T ss_dssp CB
T ss_pred CC
Confidence 85
No 98
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=96.54 E-value=0.0097 Score=60.82 Aligned_cols=152 Identities=8% Similarity=0.005 Sum_probs=92.9
Q ss_pred CCeEEEEccCCchhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEeccCChHHHHHHHHHHHHHcCcEEEEEEEEcC
Q 003093 3 GQTVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDD 82 (848)
Q Consensus 3 ~~V~aiIGp~~S~~~~ava~i~~~~~vP~Is~~at~p~ls~~~~p~f~r~~p~d~~q~~ai~~~~~~~~w~~vaii~~dd 82 (848)
.+|++||-....... .....+.+.++|+|......+ + +.+..+..++...+..+++++...|.++++++..+.
T Consensus 58 ~~vdgii~~~~~~~~-~~~~~l~~~~iPvV~~~~~~~---~---~~~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~ 130 (275)
T 3d8u_A 58 SRPAGVVLFGSEHSQ-RTHQLLEASNTPVLEIAELSS---K---ASYLNIGVDHFEVGKACTRHLIEQGFKNVGFIGARG 130 (275)
T ss_dssp SCCCCEEEESSCCCH-HHHHHHHHHTCCEEEESSSCS---S---SSSEEECBCHHHHHHHHHHHHHTTTCCCEEEEECSC
T ss_pred cCCCEEEEeCCCCCH-HHHHHHHhCCCCEEEEeeccC---C---CCCCEEEEChHHHHHHHHHHHHHCCCCeEEEEcCCC
Confidence 466665532221112 233344567999998754322 1 233456667777788888888778999999998653
Q ss_pred C--CccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcC--CCeEEEEEccCCcHHHHHHHHHHcCCCCCC
Q 003093 83 D--HGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALT--ESRIIVVHTHYNRGPVVFHVAQYLGMLGTG 158 (848)
Q Consensus 83 ~--~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~--~~~viv~~~~~~~~~~~~~~a~~~g~~~~~ 158 (848)
. ......+.|.++++++|+.+.....+....+..+....+.++.+. .+++|+.. +...+..++++++++|+..++
T Consensus 131 ~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~-~d~~a~g~~~al~~~g~~vP~ 209 (275)
T 3d8u_A 131 NHSTLQRQLHGWQSAMIENYLTPDHFLTTHEAPSSQLGAEGLAKLLLRDSSLNALVCS-HEEIAIGALFECHRRVLKVPT 209 (275)
T ss_dssp SSHHHHHHHHHHHHHHHHTTCCCCCEEECSSCCCHHHHHHHHHHHHTTCTTCCEEEES-SHHHHHHHHHHHHHTTCCTTT
T ss_pred CCchHHHHHHHHHHHHHHcCCCCCccEEEeCCCChhHHHHHHHHHHhCCCCCCEEEEc-CcHHHHHHHHHHHHcCCCCCC
Confidence 3 345567889999999997643222222222334444455555443 47777653 445677899999999986554
Q ss_pred eEEE
Q 003093 159 YVWI 162 (848)
Q Consensus 159 ~~wi 162 (848)
-+.+
T Consensus 210 di~v 213 (275)
T 3d8u_A 210 DIAI 213 (275)
T ss_dssp TCEE
T ss_pred ceEE
Confidence 4333
No 99
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=96.53 E-value=0.005 Score=63.68 Aligned_cols=150 Identities=8% Similarity=-0.035 Sum_probs=91.3
Q ss_pred CCeEEEEccCCchhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEeccCChHHHHHHHHHHHHHcCcEEEEEEEEcC
Q 003093 3 GQTVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDD 82 (848)
Q Consensus 3 ~~V~aiIGp~~S~~~~ava~i~~~~~vP~Is~~at~p~ls~~~~p~f~r~~p~d~~q~~ai~~~~~~~~w~~vaii~~dd 82 (848)
.+|++||-.........+ ..+.+.++|+|......+. +.+..+..++...+..+++++...|-+++++|..+.
T Consensus 66 ~~vdgiIi~~~~~~~~~~-~~l~~~~iPvV~~~~~~~~------~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~ 138 (290)
T 2rgy_A 66 RDCDGVVVISHDLHDEDL-DELHRMHPKMVFLNRAFDA------LPDASFCPDHRRGGELAAATLIEHGHRKLAVISGPF 138 (290)
T ss_dssp TTCSEEEECCSSSCHHHH-HHHHHHCSSEEEESSCCTT------SGGGEECCCHHHHHHHHHHHHHHTTCCSEEEEESCT
T ss_pred cCccEEEEecCCCCHHHH-HHHhhcCCCEEEEccccCC------CCCCEEEeCcHHHHHHHHHHHHHCCCceEEEEeCCC
Confidence 467777743322222223 3345579999987543321 123345667777788888888778999999998553
Q ss_pred C--CccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhc--CCCeEEEEEccCCcHHHHHHHHHHcCCCCCC
Q 003093 83 D--HGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVAL--TESRIIVVHTHYNRGPVVFHVAQYLGMLGTG 158 (848)
Q Consensus 83 ~--~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~--~~~~viv~~~~~~~~~~~~~~a~~~g~~~~~ 158 (848)
. ......+.|.+++++.|+.+.....+....+..+-...+.++.+ ..+++|+. .+...+..+++++++.|+..++
T Consensus 139 ~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~A~g~~~al~~~G~~vP~ 217 (290)
T 2rgy_A 139 TASDNVERLDGFFDELARHGIARDSVPLIESDFSPEGGYAATCQLLESKAPFTGLFC-ANDTMAVSALARFQQLGISVPG 217 (290)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCCGGGSCEEECCSSHHHHHHHHHHHHHHTCCCSEEEE-SSHHHHHHHHHHHHHTTCCTTT
T ss_pred CCccHHHHHHHHHHHHHHcCCCCCcccEEecCCChhHHHHHHHHHHhCCCCCcEEEE-CCcHHHHHHHHHHHHcCCCCCC
Confidence 2 34556788999999998764211111111122333334444433 36788774 4445677899999999987554
Q ss_pred eE
Q 003093 159 YV 160 (848)
Q Consensus 159 ~~ 160 (848)
-+
T Consensus 218 di 219 (290)
T 2rgy_A 218 DV 219 (290)
T ss_dssp TC
T ss_pred ce
Confidence 33
No 100
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=96.53 E-value=0.013 Score=60.49 Aligned_cols=144 Identities=13% Similarity=0.026 Sum_probs=87.8
Q ss_pred CCeEEEEccCC-chhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEe-ccCChHHHHHHHHHHHHHc------CcEE
Q 003093 3 GQTVAIIGPQD-AVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVR-TTQSDQYQMAAIAEIVDHY------GWRE 74 (848)
Q Consensus 3 ~~V~aiIGp~~-S~~~~ava~i~~~~~vP~Is~~at~p~ls~~~~p~f~r-~~p~d~~q~~ai~~~~~~~------~w~~ 74 (848)
++|++||.... ..........+.+.++|+|......+. . +++.. +..++...+..+++++... |.++
T Consensus 57 ~~vdgiI~~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~---~--~~~~~~V~~D~~~~~~~~~~~L~~~~g~~~~G~r~ 131 (290)
T 2fn9_A 57 AGYDAIIFNPTDADGSIANVKRAKEAGIPVFCVDRGINA---R--GLAVAQIYSDNYYGGVLAGEYFVKFLKEKYPDAKE 131 (290)
T ss_dssp TTCSEEEECCSCTTTTHHHHHHHHHTTCCEEEESSCCSC---S--SSSSEEEEECHHHHHHHHHHHHHHHHHHHCSSCSC
T ss_pred cCCCEEEEecCChHHHHHHHHHHHHCCCeEEEEecCCCC---C--CceEEEEeCCHHHHHHHHHHHHHHHhcccCCcccc
Confidence 46777775333 222223344556689999987654321 1 22223 5567777788888887666 8889
Q ss_pred --EEEEEEcCC--CccchHHHHHHHHhcc-CcEEEEeeecCCCCChHHHHHHHHHHhc--CCCeEEEEEccCCcHHHHHH
Q 003093 75 --VIAIYVDDD--HGRNGIAALGDTLAAK-RCRISFKAPLSVEATEDEITDLLVKVAL--TESRIIVVHTHYNRGPVVFH 147 (848)
Q Consensus 75 --vaii~~dd~--~g~~~~~~l~~~l~~~-g~~v~~~~~~~~~~~~~d~~~~l~~i~~--~~~~viv~~~~~~~~~~~~~ 147 (848)
++++..... ......+.|.+++++. |+++.... ....+..+-...+.++.+ .++++|+. .+...+..+++
T Consensus 132 i~i~~l~g~~~~~~~~~R~~gf~~~l~~~~g~~~~~~~--~~~~~~~~~~~~~~~ll~~~~~~~ai~~-~~d~~a~g~~~ 208 (290)
T 2fn9_A 132 IPYAELLGILSAQPTWDRSNGFHSVVDQYPEFKMVAQQ--SAEFDRDTAYKVTEQILQAHPEIKAIWC-GNDAMALGAMK 208 (290)
T ss_dssp EEEEEEECCTTCHHHHHHHHHHHHHHTTSTTEEEEEEE--ECTTCHHHHHHHHHHHHHHCTTCCEEEE-SSHHHHHHHHH
T ss_pred eeEEEEEcCCCCchHHHHHHHHHHHHHhCCCCEEEEec--cCCCCHHHHHHHHHHHHHhCCCCcEEEE-CCchHHHHHHH
Confidence 666654322 3455678899999999 88765321 111222333444555443 35777765 34456778999
Q ss_pred HHHHcCC
Q 003093 148 VAQYLGM 154 (848)
Q Consensus 148 ~a~~~g~ 154 (848)
++++.|+
T Consensus 209 al~~~g~ 215 (290)
T 2fn9_A 209 ACEAAGR 215 (290)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 9999998
No 101
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=96.52 E-value=0.0083 Score=61.96 Aligned_cols=152 Identities=14% Similarity=0.079 Sum_probs=96.4
Q ss_pred CCCeEEEEccCCchhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEeccCChHHHHHHHHHHHHHcCcEEEEEEEEc
Q 003093 2 EGQTVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVD 81 (848)
Q Consensus 2 ~~~V~aiIGp~~S~~~~ava~i~~~~~vP~Is~~at~p~ls~~~~p~f~r~~p~d~~q~~ai~~~~~~~~w~~vaii~~d 81 (848)
+.+|++||-....... .....+.+.++|+|......+.. +.+..+..++...+..+++++...|-++++++...
T Consensus 67 ~~~vdgiIi~~~~~~~-~~~~~l~~~~iPvV~~~~~~~~~-----~~~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~ 140 (292)
T 3k4h_A 67 GRQIGGIILLYSREND-RIIQYLHEQNFPFVLIGKPYDRK-----DEITYVDNDNYTAAREVAEYLISLGHKQIAFIGGG 140 (292)
T ss_dssp TTCCCEEEESCCBTTC-HHHHHHHHTTCCEEEESCCSSCT-----TTSCEEECCHHHHHHHHHHHHHHTTCCCEEEEESC
T ss_pred cCCCCEEEEeCCCCCh-HHHHHHHHCCCCEEEECCCCCCC-----CCCCEEEECcHHHHHHHHHHHHHCCCceEEEEeCc
Confidence 3567887642222222 34456667899999875543221 12344567777788888999888899999999855
Q ss_pred CC--CccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcC--CCeEEEEEccCCcHHHHHHHHHHcCCCCC
Q 003093 82 DD--HGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALT--ESRIIVVHTHYNRGPVVFHVAQYLGMLGT 157 (848)
Q Consensus 82 d~--~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~--~~~viv~~~~~~~~~~~~~~a~~~g~~~~ 157 (848)
.. ......+.|.+++++.|+.+.....+....+..+....+.++.+. ++++|+. .+...+..++++++++|+..+
T Consensus 141 ~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP 219 (292)
T 3k4h_A 141 SDLLVTRDRLAGMSDALKLADIVLPKEYILHFDFSRESGQQAVEELMGLQQPPTAIMA-TDDLIGLGVLSALSKKGFVVP 219 (292)
T ss_dssp TTBHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHHHTSSSCCSEEEE-SSHHHHHHHHHHHHHTTCCTT
T ss_pred ccchhHHHHHHHHHHHHHHcCCCCChheEEecCCCHHHHHHHHHHHHcCCCCCcEEEE-cChHHHHHHHHHHHHhCCCCC
Confidence 33 344567889999999998653221112222334445555665544 5677664 445567789999999998755
Q ss_pred CeE
Q 003093 158 GYV 160 (848)
Q Consensus 158 ~~~ 160 (848)
+-+
T Consensus 220 ~di 222 (292)
T 3k4h_A 220 KDV 222 (292)
T ss_dssp TTC
T ss_pred CeE
Confidence 433
No 102
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=96.52 E-value=0.012 Score=61.25 Aligned_cols=150 Identities=7% Similarity=-0.014 Sum_probs=93.6
Q ss_pred CCeEEEEccC-CchhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEeccCChHHHHHHHHHHHHH------------
Q 003093 3 GQTVAIIGPQ-DAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDH------------ 69 (848)
Q Consensus 3 ~~V~aiIGp~-~S~~~~ava~i~~~~~vP~Is~~at~p~ls~~~~p~f~r~~p~d~~q~~ai~~~~~~------------ 69 (848)
++|++||-.. ...........+.+.++|+|......+...-..++.+..+..++...+..+++++..
T Consensus 58 ~~vdgiii~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~~~~~~~V~~d~~~~g~~~~~~L~~~~~~~~~~~~~g 137 (309)
T 2fvy_A 58 KGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNK 137 (309)
T ss_dssp TTCSEEEECCSSGGGHHHHHHHHHTTTCCEEEESSCCCHHHHHTCTTEEEEECCHHHHHHHHHHHHHHHHHHCGGGCTTC
T ss_pred cCCCEEEEeCCCcchhHHHHHHHHHCCCcEEEecCCCCcccccccCccEEEecCHHHHHHHHHHHHHHHHhhcccccccC
Confidence 4677777533 333233444556678999998755322110012345666778888888888888765
Q ss_pred cCcEEEEEEEEcC--CCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcC----CCeEEEEEccCCcHH
Q 003093 70 YGWREVIAIYVDD--DHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALT----ESRIIVVHTHYNRGP 143 (848)
Q Consensus 70 ~~w~~vaii~~dd--~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~----~~~viv~~~~~~~~~ 143 (848)
.|-+++++|.... .......+.|.+++++.|+.+.....+....+..+-...+.++.+. .+++|+. .+...+.
T Consensus 138 ~g~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~~-~~d~~a~ 216 (309)
T 2fvy_A 138 DGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIA-NNDAMAM 216 (309)
T ss_dssp SSSEEEEEEECSTTCHHHHHHHHHHHHHHHHTTCCEEEEEEEECTTCHHHHHHHHHHHHTSTTGGGCCEEEE-SSHHHHH
T ss_pred CCceEEEEEEcCCCCccHHHHHHHHHHHHHhcCCceEEEEEecCCCCHHHHHHHHHHHHHhCCCCCccEEEE-CCchhHH
Confidence 6888999998543 2345667889999999998654332222222334444455555443 5677665 3445677
Q ss_pred HHHHHHHHcC
Q 003093 144 VVFHVAQYLG 153 (848)
Q Consensus 144 ~~~~~a~~~g 153 (848)
.++++++++|
T Consensus 217 g~~~al~~~g 226 (309)
T 2fvy_A 217 GAVEALKAHN 226 (309)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHcC
Confidence 7999999988
No 103
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=96.51 E-value=0.0097 Score=61.80 Aligned_cols=155 Identities=10% Similarity=0.034 Sum_probs=94.1
Q ss_pred CCCeEEEE-ccCCchhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEeccCChHHHHHHHHHHHHHcCc--EEEEEE
Q 003093 2 EGQTVAII-GPQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGW--REVIAI 78 (848)
Q Consensus 2 ~~~V~aiI-Gp~~S~~~~ava~i~~~~~vP~Is~~at~p~ls~~~~p~f~r~~p~d~~q~~ai~~~~~~~~w--~~vaii 78 (848)
+++|++|| -|..+.........+.+.++|+|......+.. +.+-.+..++...+..+++++...|. ++++++
T Consensus 67 ~~~vdgiii~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~-----~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~i~~i 141 (304)
T 3gbv_A 67 EEQPDGVMFAPTVPQYTKGFTDALNELGIPYIYIDSQIKDA-----PPLAFFGQNSHQSGYFAARMLMLLAVNDREIVIF 141 (304)
T ss_dssp TTCCSEEEECCSSGGGTHHHHHHHHHHTCCEEEESSCCTTS-----CCSEEEECCHHHHHHHHHHHHHHHSTTCSEEEEE
T ss_pred hcCCCEEEECCCChHHHHHHHHHHHHCCCeEEEEeCCCCCC-----CceEEEecChHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 35677766 44444334444555667799999876543221 12344567778888889999888888 999999
Q ss_pred EEc------CCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhc--CCCeEEEEEccCCcHHHHHHHHH
Q 003093 79 YVD------DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVAL--TESRIIVVHTHYNRGPVVFHVAQ 150 (848)
Q Consensus 79 ~~d------d~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~--~~~~viv~~~~~~~~~~~~~~a~ 150 (848)
..+ ........+.|.+++++.|..+..........+...-...+.++.. .++++|+...+. +..++++++
T Consensus 142 ~~~~~g~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~--a~g~~~al~ 219 (304)
T 3gbv_A 142 RKIHEGVIGSNQQESREIGFRQYMQEHHPACNILELNLHADLNIEDSRMLDDFFREHPDVKHGITFNSK--VYIIGEYLQ 219 (304)
T ss_dssp EEEBTTBCCCHHHHHHHHHHHHHHHHHCTTSEEEEEEEESSCSSCHHHHHHHHHHHCTTCCEEEESSSC--THHHHHHHH
T ss_pred EecccCCccchhHHHHHHHHHHHHHhhCCCcEEEEeeecCCCHHHHHHHHHHHHHhCCCeEEEEEcCcc--hHHHHHHHH
Confidence 843 1234566789999999987643222111111111112223333322 357887766554 778999999
Q ss_pred HcCCCCCCeEEEecC
Q 003093 151 YLGMLGTGYVWIATS 165 (848)
Q Consensus 151 ~~g~~~~~~~wi~~~ 165 (848)
++|+ .+...++.|
T Consensus 220 ~~g~--~di~vig~d 232 (304)
T 3gbv_A 220 QRRK--SDFSLIGYD 232 (304)
T ss_dssp HTTC--CSCEEEEES
T ss_pred HcCC--CCcEEEEeC
Confidence 9998 454555544
No 104
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=96.49 E-value=0.0055 Score=64.84 Aligned_cols=153 Identities=8% Similarity=0.013 Sum_probs=92.9
Q ss_pred CCeEEEEccCCchhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEeccCChHHHHHHHHHHHHHcCcEEEEEEEEcC
Q 003093 3 GQTVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDD 82 (848)
Q Consensus 3 ~~V~aiIGp~~S~~~~ava~i~~~~~vP~Is~~at~p~ls~~~~p~f~r~~p~d~~q~~ai~~~~~~~~w~~vaii~~dd 82 (848)
++|++||-.........+.. +...++|+|......+ + +.+..+..++...+..+++++...|.+++++|..+.
T Consensus 118 ~~vdgiI~~~~~~~~~~~~~-l~~~~iPvV~~~~~~~---~---~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~ 190 (332)
T 2o20_A 118 KQVDGIVYMGSSLDEKIRTS-LKNSRTPVVLVGTIDG---D---KEIPSVNIDYHLAAYQSTKKLIDSGNKKIAYIMGSL 190 (332)
T ss_dssp TTCSEEEECSSCCCHHHHHH-HHHHCCCEEEESCCCT---T---SCSCEEECCHHHHHHHHHHHHHHTTCSSEEEECSCT
T ss_pred CCCCEEEEeCCCCCHHHHHH-HHhCCCCEEEEccccC---C---CCCCEEEeChHHHHHHHHHHHHHCCCCeEEEEeCCc
Confidence 46777775332222223333 3467999998755332 1 122335566677778888888888999999998553
Q ss_pred C--CccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccCCcHHHHHHHHHHcCCCCCCeE
Q 003093 83 D--HGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYV 160 (848)
Q Consensus 83 ~--~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~~ 160 (848)
. ......+.|.+++++.|+.+.....+....+..+-...+.++.+..+++|+.. +...+..+++++++.|+..++-+
T Consensus 191 ~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ai~~~-~d~~A~g~~~al~~~G~~vP~di 269 (332)
T 2o20_A 191 KDVENTERMVGYQEALLEANIEFDENLVFEGNYSYEQGKALAERLLERGATSAVVS-HDTVAVGLLSAMMDKGVKVPEDF 269 (332)
T ss_dssp TSHHHHHHHHHHHHHHHHTTCCCCGGGEECSCCSHHHHHHHHHHHHHTTCCEEEES-CHHHHHHHHHHHHHTTCCTTTTC
T ss_pred ccccHHHHHHHHHHHHHHcCCCCChhhEEeCCCCHHHHHHHHHHHhccCCCEEEEC-ChHHHHHHHHHHHHcCCCCccCE
Confidence 2 34556788999999999765321112212222333334444333378887764 44567789999999998755444
Q ss_pred EEe
Q 003093 161 WIA 163 (848)
Q Consensus 161 wi~ 163 (848)
-+.
T Consensus 270 svi 272 (332)
T 2o20_A 270 EII 272 (332)
T ss_dssp EEE
T ss_pred EEE
Confidence 333
No 105
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=96.46 E-value=0.025 Score=59.41 Aligned_cols=154 Identities=6% Similarity=0.033 Sum_probs=94.8
Q ss_pred CCeEEEEccCCchhH-HHHHHhhccCCccEEecccCCCCCCCCCCCceEeccCChHHHHHHHHHHHHHc--CcEEEEEEE
Q 003093 3 GQTVAIIGPQDAVTS-HVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHY--GWREVIAIY 79 (848)
Q Consensus 3 ~~V~aiIGp~~S~~~-~ava~i~~~~~vP~Is~~at~p~ls~~~~p~f~r~~p~d~~q~~ai~~~~~~~--~w~~vaii~ 79 (848)
++|++||....+... ......+...++|+|.+....+. .+.+..+..++...+..+++++... |.++++++.
T Consensus 61 ~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~-----~~~~~~V~~D~~~~g~~a~~~L~~~~~G~~~I~~i~ 135 (325)
T 2x7x_A 61 EGVDLLIISANEAAPMTPIVEEAYQKGIPVILVDRKILS-----DKYTAYIGADNYEIGRSVGNYIASSLKGKGNIVELT 135 (325)
T ss_dssp TTCSEEEECCSSHHHHHHHHHHHHHTTCCEEEESSCCSS-----SCSSEEEEECHHHHHHHHHHHHHHHTTTEEEEEEEE
T ss_pred cCCCEEEEeCCCHHHHHHHHHHHHHCCCeEEEeCCCCCC-----cceeEEEecCHHHHHHHHHHHHHHHcCCCceEEEEE
Confidence 568888764443322 23344455689999987543221 1233445667777788888887664 999999998
Q ss_pred EcCC--CccchHHHHHHHHhcc-CcEEEEeeecCCCCChHHHHHHHHHHhc--CCCeEEEEEccCCcHHHHHHHHHHcCC
Q 003093 80 VDDD--HGRNGIAALGDTLAAK-RCRISFKAPLSVEATEDEITDLLVKVAL--TESRIIVVHTHYNRGPVVFHVAQYLGM 154 (848)
Q Consensus 80 ~dd~--~g~~~~~~l~~~l~~~-g~~v~~~~~~~~~~~~~d~~~~l~~i~~--~~~~viv~~~~~~~~~~~~~~a~~~g~ 154 (848)
.+.. ......+.|.+++++. |+++.... ....+..+-...+.++.. ..+++|+. .+...+..+++++++.|+
T Consensus 136 ~~~~~~~~~~R~~Gf~~al~~~pg~~~~~~~--~~~~~~~~~~~~~~~ll~~~~~~~aI~~-~nd~~A~g~~~al~~~Gi 212 (325)
T 2x7x_A 136 GLSGSTPAMERHQGFMAAISKFPDIKLIDKA--DAAWERGPAEIEMDSMLRRHPKIDAVYA-HNDRIAPGAYQAAKMAGR 212 (325)
T ss_dssp SCTTSHHHHHHHHHHHHHHHTCTEEEEEEEE--ECTTSHHHHHHHHHHHHHHCSCCCEEEE-SSTTHHHHHHHHHHHTTC
T ss_pred CCCCCccHHHHHHHHHHHHHhCCCCEEEeee--cCCCCHHHHHHHHHHHHHhCCCCCEEEE-CCCchHHHHHHHHHHcCC
Confidence 5432 3455678899999998 88765321 112222333444455433 35777664 455577789999999996
Q ss_pred CCCCeEEEecC
Q 003093 155 LGTGYVWIATS 165 (848)
Q Consensus 155 ~~~~~~wi~~~ 165 (848)
..+...++.|
T Consensus 213 -p~dv~vig~D 222 (325)
T 2x7x_A 213 -EKEMIFVGID 222 (325)
T ss_dssp -TTSSEEEEEE
T ss_pred -CCCeEEEEEC
Confidence 2344444443
No 106
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=96.45 E-value=0.017 Score=59.46 Aligned_cols=154 Identities=7% Similarity=-0.004 Sum_probs=95.5
Q ss_pred CCeEEEEccCCc-hhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEeccCChHHHHHHHHHHHHHc-C-cEEEEEEE
Q 003093 3 GQTVAIIGPQDA-VTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHY-G-WREVIAIY 79 (848)
Q Consensus 3 ~~V~aiIGp~~S-~~~~ava~i~~~~~vP~Is~~at~p~ls~~~~p~f~r~~p~d~~q~~ai~~~~~~~-~-w~~vaii~ 79 (848)
++|++||....+ .........+.+.++|+|......+. .+.+..+..++...+..+++++... | -++++++.
T Consensus 64 ~~vdgii~~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~-----~~~~~~V~~D~~~~g~~~~~~L~~~~G~~~~i~~i~ 138 (289)
T 3brs_A 64 RKPDVILLAAADYEKTYDAAKEIKDAGIKLIVIDSGMKQ-----DIADITVATDNIQAGIRIGAVTKNLVRKSGKIGVIS 138 (289)
T ss_dssp TCCSEEEECCSCTTTTHHHHTTTGGGTCEEEEESSCCSS-----CCCSEEEECCHHHHHHHHHHHHHHHTSSSCEEEEEE
T ss_pred hCCCEEEEeCCChHHhHHHHHHHHHCCCcEEEECCCCCC-----CcceEEEeeChHHHHHHHHHHHHHHcCCCceEEEEE
Confidence 467777753333 22223345556689999987553321 1234556777888888888887664 6 99999998
Q ss_pred EcCC--CccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcC--CCeEEEEEccCCcHHHHHHHHHHcCCC
Q 003093 80 VDDD--HGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALT--ESRIIVVHTHYNRGPVVFHVAQYLGML 155 (848)
Q Consensus 80 ~dd~--~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~--~~~viv~~~~~~~~~~~~~~a~~~g~~ 155 (848)
.+.. ......+.|.+++++.|..+... +....+..+....+.++.+. .+++|+. .+...+..++++++++|+.
T Consensus 139 ~~~~~~~~~~R~~gf~~~l~~~g~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~G~~ 215 (289)
T 3brs_A 139 FVKNSKTAMDREEGLKIGLSDDSNKIEAI--YYCDSNYDKAYDGTVELLTKYPDISVMVG-LNQYSATGAARAIKDMSLE 215 (289)
T ss_dssp SCTTSHHHHHHHHHHHHHHGGGGGGEEEE--EECTTCHHHHHHHHHHHHHHCTTEEEEEE-SSHHHHHHHHHHHHHTTCT
T ss_pred CCCCCccHHHHHHHHHHHHHhCCCcEEee--ecCCCCHHHHHHHHHHHHHhCCCceEEEE-CCCcchHHHHHHHHhcCCC
Confidence 5432 34556788999999998764332 22222334444555555443 4666554 3445677799999999986
Q ss_pred CCCeEEEecC
Q 003093 156 GTGYVWIATS 165 (848)
Q Consensus 156 ~~~~~wi~~~ 165 (848)
.+...++.+
T Consensus 216 -~di~vvg~d 224 (289)
T 3brs_A 216 -AKVKLVCID 224 (289)
T ss_dssp -TTSEEEEEE
T ss_pred -CCEEEEEEC
Confidence 344444443
No 107
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=96.44 E-value=0.0054 Score=64.88 Aligned_cols=156 Identities=13% Similarity=0.026 Sum_probs=94.7
Q ss_pred CCCeEEEEccCCchhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEeccCChHHHHHHHHHHHHHcCcEEEEEEEEc
Q 003093 2 EGQTVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVD 81 (848)
Q Consensus 2 ~~~V~aiIGp~~S~~~~ava~i~~~~~vP~Is~~at~p~ls~~~~p~f~r~~p~d~~q~~ai~~~~~~~~w~~vaii~~d 81 (848)
+++|++||-......... ...+...++|+|......+ + +.+..+..++...+..+++++...|.+++++|..+
T Consensus 114 ~~~vdgiI~~~~~~~~~~-~~~l~~~~iPvV~~~~~~~---~---~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~ 186 (332)
T 2hsg_A 114 GKQVDGIIFMSGNVTEEH-VEELKKSPVPVVLAASIES---T---NQIPSVTIDYEQAAFDAVQSLIDSGHKNIAFVSGT 186 (332)
T ss_dssp CCSSCCEEECCSSCCHHH-HHHHTTSSSCEEEESCCCS---C---TTSCEEEECHHHHHHHHHHHHHTTTCSCEEEEESC
T ss_pred hCCCcEEEEecCCCCHHH-HHHHHhCCCCEEEEccccC---C---CCCCEEEEChHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 457887775332222233 3344568999998755332 1 12233556666677888888877899999999854
Q ss_pred C-C--CccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcC--CCeEEEEEccCCcHHHHHHHHHHcCCCC
Q 003093 82 D-D--HGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALT--ESRIIVVHTHYNRGPVVFHVAQYLGMLG 156 (848)
Q Consensus 82 d-~--~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~--~~~viv~~~~~~~~~~~~~~a~~~g~~~ 156 (848)
. + ......+.|.+++++.|+.+.....+....+..+-...+.++.+. .+++|+. .+...+..+++++++.|+..
T Consensus 187 ~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~-~nd~~A~g~~~al~~~G~~v 265 (332)
T 2hsg_A 187 LEEPINHAKKVKGYKRALTESGLPVRDSYIVEGDYTYDSGIEAVEKLLEEDEKPTAIFV-GTDEMALGVIHGAQDRGLNV 265 (332)
T ss_dssp TTSHHHHTTHHHHHHHHHHTTTCCCCGGGEEECCSSHHHHHHHHHHHHHSSSCCSEEEE-SSHHHHHHHHHHHHHTTCCH
T ss_pred cccCccHHHHHHHHHHHHHHcCCCCChheEEeCCCCHHHHHHHHHHHHcCCCCCeEEEE-CChHHHHHHHHHHHHcCCCC
Confidence 3 2 345667899999999997643111111112223334445555443 5777774 44556778999999999865
Q ss_pred CCe-EEEecC
Q 003093 157 TGY-VWIATS 165 (848)
Q Consensus 157 ~~~-~wi~~~ 165 (848)
++- ..++.|
T Consensus 266 P~disvvg~D 275 (332)
T 2hsg_A 266 PNDLEIIGFD 275 (332)
T ss_dssp HHHCEEEEES
T ss_pred CCCeEEEEEC
Confidence 443 334333
No 108
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=96.43 E-value=0.0062 Score=62.53 Aligned_cols=147 Identities=12% Similarity=0.036 Sum_probs=91.6
Q ss_pred CCCeEEEEccCCchhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEeccCChHHHHHHHHHHHHHcCcEEEEEEEEc
Q 003093 2 EGQTVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVD 81 (848)
Q Consensus 2 ~~~V~aiIGp~~S~~~~ava~i~~~~~vP~Is~~at~p~ls~~~~p~f~r~~p~d~~q~~ai~~~~~~~~w~~vaii~~d 81 (848)
+++|++|| -........+.. .++|+|......+ .....+ .+..++...+..+++++...|-++++++...
T Consensus 58 ~~~vdgiI-~~~~~~~~~~~~----~~iPvV~~~~~~~--~~~~~~---~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~ 127 (280)
T 3gyb_A 58 SMRPDGII-IAQDIPDFTVPD----SLPPFVIAGTRIT--QASTHD---SVANDDFRGAEIATKHLIDLGHTHIAHLRVG 127 (280)
T ss_dssp TTCCSEEE-EESCC------------CCCEEEESCCCS--SSCSTT---EEEECHHHHHHHHHHHHHHTTCCSEEEECCS
T ss_pred hCCCCEEE-ecCCCChhhHhh----cCCCEEEECCCCC--CCCCCC---EEEechHHHHHHHHHHHHHCCCCeEEEEeCC
Confidence 35788888 322222222222 8999998765442 112222 3456777788888998888899999999865
Q ss_pred CCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhc--CCCeEEEEEccCCcHHHHHHHHHHcCCCCCCe
Q 003093 82 DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVAL--TESRIIVVHTHYNRGPVVFHVAQYLGMLGTGY 159 (848)
Q Consensus 82 d~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~--~~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~ 159 (848)
........+.|.+++++.|+.+.... +....+..+-...+.++.+ ..+++|+. .+...+..++++++++|+..++-
T Consensus 128 ~~~~~~R~~gf~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP~d 205 (280)
T 3gyb_A 128 SGAGLRRFESFEATMRAHGLEPLSND-YLGPAVEHAGYTETLALLKEHPEVTAIFS-SNDITAIGALGAARELGLRVPED 205 (280)
T ss_dssp SHHHHHHHHHHHHHHHHTTCCCEECC-CCSCCCHHHHHHHHHHHHHHCTTCCEEEE-SSHHHHHHHHHHHHHHTCCTTTT
T ss_pred CchHHHHHHHHHHHHHHcCcCCCccc-ccCCCCHHHHHHHHHHHHhCCCCCCEEEE-CChHHHHHHHHHHHHcCCCCCCe
Confidence 44456667899999999998765433 3322333444444555443 35677664 44556778999999999875543
Q ss_pred E
Q 003093 160 V 160 (848)
Q Consensus 160 ~ 160 (848)
+
T Consensus 206 i 206 (280)
T 3gyb_A 206 L 206 (280)
T ss_dssp C
T ss_pred e
Confidence 3
No 109
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=96.42 E-value=0.007 Score=64.19 Aligned_cols=153 Identities=10% Similarity=-0.011 Sum_probs=97.6
Q ss_pred CCeEEEEccCCchhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEeccCChHHHHHHHHHHHHHcCcEEEEEEEEcC
Q 003093 3 GQTVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDD 82 (848)
Q Consensus 3 ~~V~aiIGp~~S~~~~ava~i~~~~~vP~Is~~at~p~ls~~~~p~f~r~~p~d~~q~~ai~~~~~~~~w~~vaii~~dd 82 (848)
.+|++||-.........+...+...++|+|......+. +.+..+..++..-+..+++++...|.++++++....
T Consensus 118 ~~vdgiIi~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~------~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~ 191 (338)
T 3dbi_A 118 LRCDAIMIYPRFLSVDEIDDIIDAHSQPIMVLNRRLRK------NSSHSVWCDHKQTSFNAVAELINAGHQEIAFLTGSM 191 (338)
T ss_dssp TTCSEEEECCSSSCHHHHHHHHHHCSSCEEEESSCCSS------SGGGEECBCHHHHHHHHHHHHHHTTCCSEEEECCCT
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCCCCEEEEcCCCCC------CCCCEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCC
Confidence 46777774333333455677788889999987554322 122335667777788888888888999999997543
Q ss_pred C--CccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhc--CCCeEEEEEccCCcHHHHHHHHHHcCCCCCC
Q 003093 83 D--HGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVAL--TESRIIVVHTHYNRGPVVFHVAQYLGMLGTG 158 (848)
Q Consensus 83 ~--~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~--~~~~viv~~~~~~~~~~~~~~a~~~g~~~~~ 158 (848)
+ ....-.+.|.+++++.|+.+.....+....+..+-...+.++.+ ..+++|+. .+...+..++++++++|+..++
T Consensus 192 ~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~-~nd~~A~g~~~al~~~G~~vP~ 270 (338)
T 3dbi_A 192 DSPTSIERLAGYKDALAQHGIALNEKLIANGKWTPASGAEGVEMLLERGAKFSALVA-SNDDMAIGAMKALHERGVAVPE 270 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHTTCCCCGGGEECCCSSHHHHHHHHHHHHHTTCCCSEEEE-SSHHHHHHHHHHHHHTTCCTTT
T ss_pred CCccHHHHHHHHHHHHHHCCCCCCcceEEeCCCCHHHHHHHHHHHHcCCCCCeEEEE-CChHHHHHHHHHHHHcCCCCCC
Confidence 2 34456788999999999865322122222233344444555543 35777765 4445677899999999997654
Q ss_pred eEEE
Q 003093 159 YVWI 162 (848)
Q Consensus 159 ~~wi 162 (848)
-+-|
T Consensus 271 di~v 274 (338)
T 3dbi_A 271 QVSV 274 (338)
T ss_dssp TCEE
T ss_pred CeEE
Confidence 4433
No 110
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=96.39 E-value=0.026 Score=57.76 Aligned_cols=149 Identities=9% Similarity=-0.029 Sum_probs=92.4
Q ss_pred CeEEEEccCCchhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEeccCChHHHHHHHHHHHHHcCcEEEEEEEEcCC
Q 003093 4 QTVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDD 83 (848)
Q Consensus 4 ~V~aiIGp~~S~~~~ava~i~~~~~vP~Is~~at~p~ls~~~~p~f~r~~p~d~~q~~ai~~~~~~~~w~~vaii~~dd~ 83 (848)
+|++||-.........+ ..+.+.++|+|......+ . +.+..+..++...+..+++++...|.++++++..+..
T Consensus 57 ~vdgiI~~~~~~~~~~~-~~l~~~~iPvV~~~~~~~---~---~~~~~V~~D~~~~~~~a~~~L~~~G~~~i~~i~~~~~ 129 (277)
T 3cs3_A 57 MVDGAIILDWTFPTKEI-EKFAERGHSIVVLDRTTE---H---RNIRQVLLDNRGGATQAIEQFVNVGSKKVLLLSGPEK 129 (277)
T ss_dssp TCSEEEEECTTSCHHHH-HHHHHTTCEEEESSSCCC---S---TTEEEEEECHHHHHHHHHHHHHHTTCSCEEEEECCTT
T ss_pred cccEEEEecCCCCHHHH-HHHHhcCCCEEEEecCCC---C---CCCCEEEeCcHHHHHHHHHHHHHcCCceEEEEeCCcc
Confidence 45665532221122333 344568999998754322 1 2344556677777788888887789999999985533
Q ss_pred --CccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcC---CCeEEEEEccCCcHHHHHHHHHHcCCCCCC
Q 003093 84 --HGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALT---ESRIIVVHTHYNRGPVVFHVAQYLGMLGTG 158 (848)
Q Consensus 84 --~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~---~~~viv~~~~~~~~~~~~~~a~~~g~~~~~ 158 (848)
......+.|.+++++.|+.+. . +....+..+-...+.++.+. ++++|+. .+...+..+++++++.|+..++
T Consensus 130 ~~~~~~R~~gf~~~l~~~g~~~~-~--~~~~~~~~~~~~~~~~~l~~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP~ 205 (277)
T 3cs3_A 130 GYDSQERLAVSTRELTRFGIPYE-I--IQGDFTEPSGYAAAKKILSQPQTEPVDVFA-FNDEMAIGVYKYVAETNYQMGK 205 (277)
T ss_dssp SHHHHHHHHHHHHHHHHTTCCEE-E--EECCSSHHHHHHHHHHHTTSCCCSSEEEEE-SSHHHHHHHHHHHTTSSCCBTT
T ss_pred CccHHHHHHHHHHHHHHcCCCee-E--EeCCCChhHHHHHHHHHHhcCCCCCcEEEE-cChHHHHHHHHHHHHcCCCCCC
Confidence 344567889999999998765 1 11122334444556666544 5676654 4445677799999999986555
Q ss_pred eEEEe
Q 003093 159 YVWIA 163 (848)
Q Consensus 159 ~~wi~ 163 (848)
-+.+.
T Consensus 206 di~vv 210 (277)
T 3cs3_A 206 DIRII 210 (277)
T ss_dssp TEEEE
T ss_pred cEEEE
Confidence 44444
No 111
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=96.39 E-value=0.0016 Score=55.50 Aligned_cols=80 Identities=15% Similarity=0.074 Sum_probs=63.1
Q ss_pred HHHHHHHHHHhhhhhcccCCCCCCCCCCCcchhhhhHHHHhhhcC--ccccccchhHHHHHHHHhhhhhhhccccceeee
Q 003093 504 AIFFLAVGAVVWILEHRLNDEFRGPPKRQVVTIFWFSFSTMFFAH--KEKTVSALGRLVLIIWLFVVLIINSSYTASLTS 581 (848)
Q Consensus 504 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s 581 (848)
++.+++.+.+++.+|+..+ +....++.+++|+++.++...| .-.|.+..+|++.++|.++++.+.+...+.+.+
T Consensus 16 ~~~~~~~a~~~~~~E~~~~----~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~l~G~~~~~~~~~~i~~ 91 (103)
T 2k1e_A 16 QKVLEEASKKAVEAERGAP----GAALISYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVTAALAT 91 (103)
T ss_dssp HHHHHHHHHHHHHHHTTST----TCCCCCGGGTTTTTTGGGGCCSCCSSCCCSSSCTHHHHHHHHHHHHHHHHTHHHHHT
T ss_pred HHHHHHHHHhhhhhccCCC----CcccccHHHHHHHHHHHHhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455666778887543 3345689999999999999665 458999999999999999999999999999988
Q ss_pred eeeecc
Q 003093 582 ILTVQK 587 (848)
Q Consensus 582 ~Lt~~~ 587 (848)
.++...
T Consensus 92 ~~~~~~ 97 (103)
T 2k1e_A 92 DFVRRE 97 (103)
T ss_dssp TGGGHH
T ss_pred HHHHHH
Confidence 886543
No 112
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=96.34 E-value=0.013 Score=60.33 Aligned_cols=151 Identities=12% Similarity=0.019 Sum_probs=96.2
Q ss_pred CCCeEEEEccCCchhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEeccCChHHHHHHHHHHHHHcCcEEEEEEEEc
Q 003093 2 EGQTVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVD 81 (848)
Q Consensus 2 ~~~V~aiIGp~~S~~~~ava~i~~~~~vP~Is~~at~p~ls~~~~p~f~r~~p~d~~q~~ai~~~~~~~~w~~vaii~~d 81 (848)
+++|++||=.........+... ...++|+|......+ .+-.+..++...+..+++++...|-++++++..+
T Consensus 66 ~~~vdgiIi~~~~~~~~~~~~~-~~~~iPvV~~~~~~~--------~~~~V~~D~~~~~~~a~~~L~~~G~~~i~~i~~~ 136 (289)
T 3g85_A 66 ENSFDAAIIANISNYDLEYLNK-ASLTLPIILFNRLSN--------KYSSVNVDNYKMGEKASLLFAKKRYKSAAAILTE 136 (289)
T ss_dssp TTCCSEEEESSCCHHHHHHHHH-CCCSSCEEEESCCCS--------SSEEEEECHHHHHHHHHHHHHHTTCCBCEEEECC
T ss_pred ccCCCEEEEecCCcccHHHHHh-ccCCCCEEEECCCCC--------CCCEEEeCHHHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 3567777743333333333333 467999998765322 2334566777788889999888899999999855
Q ss_pred CC--CccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcC--CCeEEEEEccCCcHHHHHHHHHHcCCCCC
Q 003093 82 DD--HGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALT--ESRIIVVHTHYNRGPVVFHVAQYLGMLGT 157 (848)
Q Consensus 82 d~--~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~--~~~viv~~~~~~~~~~~~~~a~~~g~~~~ 157 (848)
.. ......+.|.+++++.|+.+.....+....+..+....+.++.+. .+++|+. .+...+..++++++++|+..+
T Consensus 137 ~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP 215 (289)
T 3g85_A 137 SLNDAMDNRNKGFIETCHKNGIKISENHIIAAENSIHGGVDAAKKLMKLKNTPKALFC-NSDSIALGVISVLNKRQISIP 215 (289)
T ss_dssp CSSHHHHHHHHHHHHHHHHTTCBCCGGGEEECCSSHHHHHHHHHHHTTSSSCCSEEEE-SSHHHHHHHHHHHHHTTCCTT
T ss_pred cccccHHHHHHHHHHHHHHcCCCCChhheeccCCCHHHHHHHHHHHHcCCCCCcEEEE-cCCHHHHHHHHHHHHcCCCCC
Confidence 33 345567899999999997643211112222334445556666543 4677664 455567789999999998765
Q ss_pred CeEEE
Q 003093 158 GYVWI 162 (848)
Q Consensus 158 ~~~wi 162 (848)
+-+-|
T Consensus 216 ~di~v 220 (289)
T 3g85_A 216 DDIEI 220 (289)
T ss_dssp TTCEE
T ss_pred CceEE
Confidence 44433
No 113
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=96.33 E-value=0.023 Score=58.58 Aligned_cols=152 Identities=11% Similarity=0.047 Sum_probs=96.9
Q ss_pred CCeEEEEccCCchhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEeccCChHHHHHHHHHHHHHcCcEEEEEEEEcC
Q 003093 3 GQTVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDD 82 (848)
Q Consensus 3 ~~V~aiIGp~~S~~~~ava~i~~~~~vP~Is~~at~p~ls~~~~p~f~r~~p~d~~q~~ai~~~~~~~~w~~vaii~~dd 82 (848)
++|++||=....... .....+.+.++|+|......+. .. +-.+..++...+..+++++...|-++++++..+.
T Consensus 65 ~~vdgiIi~~~~~~~-~~~~~l~~~~iPvV~i~~~~~~---~~---~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~ 137 (288)
T 3gv0_A 65 GSADGVIISKIEPND-PRVRFMTERNMPFVTHGRSDMG---IE---HAFHDFDNEAYAYEAVERLAQCGRKRIAVIVPPS 137 (288)
T ss_dssp TCCSEEEEESCCTTC-HHHHHHHHTTCCEEEESCCCSS---CC---CEEEEECHHHHHHHHHHHHHHTTCCEEEEECCCT
T ss_pred CCccEEEEecCCCCc-HHHHHHhhCCCCEEEECCcCCC---CC---CcEEEeCcHHHHHHHHHHHHHCCCCeEEEEcCCc
Confidence 456665522111112 3344566789999987654321 12 2335567777788889998888999999997554
Q ss_pred CC--ccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcC--CCeEEEEEccCCcHHHHHHHHHHcCCCCCC
Q 003093 83 DH--GRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALT--ESRIIVVHTHYNRGPVVFHVAQYLGMLGTG 158 (848)
Q Consensus 83 ~~--g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~--~~~viv~~~~~~~~~~~~~~a~~~g~~~~~ 158 (848)
.. .....+.|.+++++.|+.+.....+....+..+....+.++.+. .+++|+. .+...+..++++++++|+..++
T Consensus 138 ~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~A~g~~~al~~~g~~vP~ 216 (288)
T 3gv0_A 138 RFSFHDHARKGFNRGIRDFGLTEFPIDAVTIETPLEKIRDFGQRLMQSSDRPDGIVS-ISGSSTIALVAGFEAAGVKIGE 216 (288)
T ss_dssp TSHHHHHHHHHHHHHHHHTTCEECCCCSCCTTSCHHHHHHHHHHHTTSSSCCSEEEE-SCHHHHHHHHHHHHTTTCCTTT
T ss_pred ccchHHHHHHHHHHHHHHcCCCcchhheeccccchHHHHHHHHHHHhCCCCCcEEEE-cCcHHHHHHHHHHHHcCCCCCC
Confidence 33 45567899999999998765432333333445555666666554 4677664 4455677799999999987554
Q ss_pred eEEE
Q 003093 159 YVWI 162 (848)
Q Consensus 159 ~~wi 162 (848)
-+-|
T Consensus 217 di~v 220 (288)
T 3gv0_A 217 DVDI 220 (288)
T ss_dssp SCEE
T ss_pred ceEE
Confidence 3333
No 114
>4ddd_A Immunogenic protein; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, immune system; 1.90A {Ehrlichia chaffeensis}
Probab=96.33 E-value=0.0052 Score=64.78 Aligned_cols=61 Identities=23% Similarity=0.221 Sum_probs=42.4
Q ss_pred CCCCChHHhhcCCCCeeEE-eCchHHH---HHHhhhCCCccC--cccCCCHHHHHHHhhcCCCCCceEEEEcc
Q 003093 590 SPIKGIDSLRSSNYPIGYQ-VNSFARN---YLVDELNIDESR--LVPLNSPEEYAKALKDGPHKGGVAAVVDD 656 (848)
Q Consensus 590 ~~i~sl~dL~~s~~~i~~~-~~s~~~~---~l~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~a~~~~ 656 (848)
.+|++++||. ++++++. .|+.... .+.+..+..... .+.+....+.+.+|.. |++|+++..
T Consensus 136 s~i~sl~DL~--gk~v~~~~~Gs~~~~~~~~~l~~~Gi~~~~v~~v~~~g~~~a~~aL~~----G~vDa~~~~ 202 (327)
T 4ddd_A 136 SNISVIDDIK--GKRVNIGSPGTGVRVAMLKLLGEKGWTKKDFSVMAELKSSEQAQALCD----NKIDVMVDV 202 (327)
T ss_dssp SSCCSGGGGT--TSEEECCSTTSHHHHHHHHHHHHHTCCGGGCSEEECCCHHHHHHHHHT----TSCSBEEEE
T ss_pred CCCCCHHHhC--CCEEecCCCCccHHHHHHHHHHHcCCChHhcchhhcCCHHHHHHHHHc----CCCCEEEEc
Confidence 4799999998 7888884 4553322 222344444332 3678899999999999 899988764
No 115
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=96.30 E-value=0.015 Score=59.95 Aligned_cols=153 Identities=14% Similarity=-0.030 Sum_probs=97.9
Q ss_pred CCeEEEE-ccCCchhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEeccCChHHHHHHHHHHHHH--cCcEEEEEEE
Q 003093 3 GQTVAII-GPQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDH--YGWREVIAIY 79 (848)
Q Consensus 3 ~~V~aiI-Gp~~S~~~~ava~i~~~~~vP~Is~~at~p~ls~~~~p~f~r~~p~d~~q~~ai~~~~~~--~~w~~vaii~ 79 (848)
++|++|| .|..+.........+.+.++|+|......+ +.+..+..++...+..+++++.. .|-++++++.
T Consensus 60 ~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~-------~~~~~V~~D~~~~g~~~~~~l~~~~~g~~~i~~i~ 132 (291)
T 3l49_A 60 QKPDAIIEQLGNLDVLNPWLQKINDAGIPLFTVDTATP-------HAINNTTSNNYSIGAELALQMVADLGGKGNVLVFN 132 (291)
T ss_dssp HCCSEEEEESSCHHHHHHHHHHHHHTTCCEEEESCCCT-------TCSEEEEECHHHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred cCCCEEEEeCCChhhhHHHHHHHHHCCCcEEEecCCCC-------CcCceEecChHHHHHHHHHHHHHHcCCCceEEEEe
Confidence 3567766 566655556666777888999998765432 12334566777778888888877 8999999997
Q ss_pred EcCCC--ccchHHHHHHHHhcc-CcEEEEeeecCCCC-ChHHHHHHHHHHhcC-----CCeEEEEEccCCcHHHHHHHHH
Q 003093 80 VDDDH--GRNGIAALGDTLAAK-RCRISFKAPLSVEA-TEDEITDLLVKVALT-----ESRIIVVHTHYNRGPVVFHVAQ 150 (848)
Q Consensus 80 ~dd~~--g~~~~~~l~~~l~~~-g~~v~~~~~~~~~~-~~~d~~~~l~~i~~~-----~~~viv~~~~~~~~~~~~~~a~ 150 (848)
.+... .....+.|.+++++. |+++.....+.... +.......+.++.+. ++++|+ +.+...+..++++++
T Consensus 133 ~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ai~-~~~d~~a~g~~~al~ 211 (291)
T 3l49_A 133 GFYSVPVCKIRYDQMKYVLEAFPDVKIIEPELRDVIPNTIQSAYSNVTDMLTKYPNEGDVGAIW-ACWDVPMIGATQALQ 211 (291)
T ss_dssp SCTTSHHHHHHHHHHHHHHHTCTTEEECSSCBCCCSSSHHHHHHHHHHHHHHHCCSTTSCCEEE-ESSHHHHHHHHHHHH
T ss_pred CCCCCchHHHHHHHHHHHHHHCCCCEEEeeeccCCCCCCHHHHHHHHHHHHHhCCCcCCcCEEE-ECCCchHHHHHHHHH
Confidence 44332 334578899999998 67754333222221 223333444444433 567775 445567777899999
Q ss_pred HcCCCCCCeEEEecC
Q 003093 151 YLGMLGTGYVWIATS 165 (848)
Q Consensus 151 ~~g~~~~~~~wi~~~ 165 (848)
++|+. +...++.|
T Consensus 212 ~~g~~--di~vvg~d 224 (291)
T 3l49_A 212 AAGRT--DIRTYGVD 224 (291)
T ss_dssp HTTCC--SCEEEEEE
T ss_pred HcCCC--CeEEEEec
Confidence 99985 44444433
No 116
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=96.27 E-value=0.012 Score=60.70 Aligned_cols=149 Identities=11% Similarity=0.032 Sum_probs=92.6
Q ss_pred CCeEEEEccCCchhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEeccCChHHHHHHHHHHHHHcCcEEEEEEEEcC
Q 003093 3 GQTVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDD 82 (848)
Q Consensus 3 ~~V~aiIGp~~S~~~~ava~i~~~~~vP~Is~~at~p~ls~~~~p~f~r~~p~d~~q~~ai~~~~~~~~w~~vaii~~dd 82 (848)
++|++||-.........+ ..+...++|+|......+ . +.+..+..++...+..+++++...|.+++++|....
T Consensus 71 ~~vdgiIi~~~~~~~~~~-~~l~~~~iPvV~~~~~~~---~---~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~ 143 (289)
T 2fep_A 71 KQVDGIVFMGGNITDEHV-AEFKRSPVPIVLAASVEE---Q---EETPSVAIDYEQAIYDAVKLLVDKGHTDIAFVSGPM 143 (289)
T ss_dssp TTCSEEEECCSCCCHHHH-HHHHHSSSCEEEESCCCT---T---CCSCEEECCHHHHHHHHHHHHHHTTCSSEEEEESCT
T ss_pred CCCCEEEEecCCCCHHHH-HHHHhcCCCEEEEccccC---C---CCCCEEEECcHHHHHHHHHHHHHCCCCeEEEEeCCc
Confidence 467777743222222233 334568999998755332 1 122345567777788888988888999999998543
Q ss_pred -C--CccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcC--CCeEEEEEccCCcHHHHHHHHHHcCCCCC
Q 003093 83 -D--HGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALT--ESRIIVVHTHYNRGPVVFHVAQYLGMLGT 157 (848)
Q Consensus 83 -~--~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~--~~~viv~~~~~~~~~~~~~~a~~~g~~~~ 157 (848)
. ......+.|.+++++.|+.+.....+....+..+-...+.++.+. .+++|+. .+...+..+++++++.|+..+
T Consensus 144 ~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~A~g~~~al~~~G~~vP 222 (289)
T 2fep_A 144 AEPINRSKKLQGYKRALEEANLPFNEQFVAEGDYTYDSGLEALQHLMSLDKKPTAILS-ATDEMALGIIHAAQDQGLSIP 222 (289)
T ss_dssp TSHHHHTTHHHHHHHHHHHTTCCCCGGGEEECCSCHHHHHHHHHHHTTSSSCCSEEEE-SSHHHHHHHHHHHHHTTCCTT
T ss_pred cccccHHHHHHHHHHHHHHcCCCCChheEeeCCCCHHHHHHHHHHHHcCCCCCCEEEE-CCHHHHHHHHHHHHHcCCCCC
Confidence 2 345667899999999997653211111122334444555665543 5777765 344567789999999998654
Q ss_pred Ce
Q 003093 158 GY 159 (848)
Q Consensus 158 ~~ 159 (848)
+-
T Consensus 223 ~d 224 (289)
T 2fep_A 223 ED 224 (289)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 117
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=96.23 E-value=0.043 Score=55.81 Aligned_cols=152 Identities=10% Similarity=0.003 Sum_probs=97.4
Q ss_pred eEEEEc-cCCchhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEeccCChHHHHHHHHHHHHHc----CcEEEEEEE
Q 003093 5 TVAIIG-PQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHY----GWREVIAIY 79 (848)
Q Consensus 5 V~aiIG-p~~S~~~~ava~i~~~~~vP~Is~~at~p~ls~~~~p~f~r~~p~d~~q~~ai~~~~~~~----~w~~vaii~ 79 (848)
|++||- |..+.........+.+.++|+|.+....+. .+.+..+..++...+..+++++... |-++++++.
T Consensus 60 vdgii~~~~~~~~~~~~~~~~~~~~ipvV~~~~~~~~-----~~~~~~V~~d~~~~g~~~~~~l~~~~~~~G~~~i~~i~ 134 (276)
T 3ksm_A 60 PDALILAPNSAEDLTPSVAQYRARNIPVLVVDSDLAG-----DAHQGLVATDNYAAGQLAARALLATLDLSKERNIALLR 134 (276)
T ss_dssp CSEEEECCSSTTTTHHHHHHHHHTTCCEEEESSCCSS-----SCSSEEEECCHHHHHHHHHHHHHHHSCTTSCEEEEECB
T ss_pred CCEEEEeCCCHHHHHHHHHHHHHCCCcEEEEecCCCC-----CCcceEEccCHHHHHHHHHHHHHHhcCcCCCceEEEEE
Confidence 777764 333444555566777889999987654321 1223445677888888899988777 899999997
Q ss_pred EcC--CCccchHHHHHHHHhcc-CcEEEEeeecCCCCChHHHHHHHHHHhcC--CCeEEEEEccCCcHHHHHHHHHHcCC
Q 003093 80 VDD--DHGRNGIAALGDTLAAK-RCRISFKAPLSVEATEDEITDLLVKVALT--ESRIIVVHTHYNRGPVVFHVAQYLGM 154 (848)
Q Consensus 80 ~dd--~~g~~~~~~l~~~l~~~-g~~v~~~~~~~~~~~~~d~~~~l~~i~~~--~~~viv~~~~~~~~~~~~~~a~~~g~ 154 (848)
.+. .......+.|.+++++. |+++... .....+..+....+.++.+. ++++|+. .+...+..++++++++|+
T Consensus 135 ~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~ 211 (276)
T 3ksm_A 135 LRAGNASTDQREQGFLDVLRKHDKIRIIAA--PYAGDDRGAARSEMLRLLKETPTIDGLFT-PNESTTIGALVAIRQSGM 211 (276)
T ss_dssp CCTTCHHHHHHHHHHHHHHTTCTTEEEEEC--CBCCSSHHHHHHHHHHHHHHCSCCCEEEC-CSHHHHHHHHHHHHHTTC
T ss_pred cCCCchhHHHHHHHHHHHHHhCCCcEEEEE--ecCCCcHHHHHHHHHHHHHhCCCceEEEE-CCchhhhHHHHHHHHcCC
Confidence 443 23456678999999998 8887632 22222334444555555443 4566554 344566779999999998
Q ss_pred CCCCeEEEecC
Q 003093 155 LGTGYVWIATS 165 (848)
Q Consensus 155 ~~~~~~wi~~~ 165 (848)
..+...++.+
T Consensus 212 -p~di~vig~d 221 (276)
T 3ksm_A 212 -SKQFGFIGFD 221 (276)
T ss_dssp -TTSSEEEEES
T ss_pred -CCCeEEEEeC
Confidence 3344444444
No 118
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=96.18 E-value=0.05 Score=57.78 Aligned_cols=154 Identities=8% Similarity=-0.004 Sum_probs=94.6
Q ss_pred CCeEEEEccCCchhHHHHHHhhccCCccEEecccCCCCCCC-------CCCC-ceEeccCChHHHHHHHHHHHHHcC---
Q 003093 3 GQTVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSS-------LQFP-YFVRTTQSDQYQMAAIAEIVDHYG--- 71 (848)
Q Consensus 3 ~~V~aiIGp~~S~~~~ava~i~~~~~vP~Is~~at~p~ls~-------~~~p-~f~r~~p~d~~q~~ai~~~~~~~~--- 71 (848)
++|++||=.........+...+...+||+|......+.... ..|+ ++..+..++...+..+++++...+
T Consensus 61 ~~vDgiIi~~~~~~~~~~~~~~~~~giPvV~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~g~~~ 140 (350)
T 3h75_A 61 DKPDYLMLVNEQYVAPQILRLSQGSGIKLFIVNSPLTLDQRELIGQSRQNYSDWIGSMVGDDEEAGYRMLKELLHKLGPV 140 (350)
T ss_dssp SCCSEEEEECCSSHHHHHHHHHTTSCCEEEEEESCCCTTTC------------CEEEEECCHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCEEEEeCchhhHHHHHHHHHhCCCcEEEEcCCCChHHHhhhcCCchhccceeeeecCChHHHHHHHHHHHHHHhhhh
Confidence 46777664333344555667778899999988765443221 1122 256667778888888888876655
Q ss_pred ---c-EEEEEEEEcCC--CccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCC--CeEEEEEccCCcHH
Q 003093 72 ---W-REVIAIYVDDD--HGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTE--SRIIVVHTHYNRGP 143 (848)
Q Consensus 72 ---w-~~vaii~~dd~--~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~--~~viv~~~~~~~~~ 143 (848)
- ++++++..... ......+.|.+++++.|. +.....+....+...-...+.++.... +++|+ +++...+.
T Consensus 141 ~~g~~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~aI~-~~~d~~a~ 218 (350)
T 3h75_A 141 PAGHGIELLAFSGLKVTPAAQLRERGLRRALAEHPQ-VHLRQLVYGEWNRERAYRQAQQLLKRYPKTQLVW-SANDEMAL 218 (350)
T ss_dssp CSSCCEEEEEEESCTTSHHHHHHHHHHHHHHHHCTT-EEEEEEEECTTCHHHHHHHHHHHHHHCTTEEEEE-ESSHHHHH
T ss_pred cCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHCCC-eEEEEEeeCCCcHHHHHHHHHHHHHhCCCcCEEE-ECChHHHH
Confidence 4 89999874432 334557889999999986 222222222223344444555554433 45443 34445677
Q ss_pred HHHHHHHHcCCCCCC
Q 003093 144 VVFHVAQYLGMLGTG 158 (848)
Q Consensus 144 ~~~~~a~~~g~~~~~ 158 (848)
.++++++++|+..++
T Consensus 219 g~~~al~~~G~~vP~ 233 (350)
T 3h75_A 219 GAMQAARELGRKPGT 233 (350)
T ss_dssp HHHHHHHHTTCCBTT
T ss_pred HHHHHHHHcCCCCCC
Confidence 899999999987554
No 119
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=96.17 E-value=0.012 Score=60.99 Aligned_cols=147 Identities=6% Similarity=-0.090 Sum_probs=92.9
Q ss_pred CeEEEE-ccCCchhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEeccCChHHHHHHHHHHHHHcC-----cEEEEE
Q 003093 4 QTVAII-GPQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYG-----WREVIA 77 (848)
Q Consensus 4 ~V~aiI-Gp~~S~~~~ava~i~~~~~vP~Is~~at~p~ls~~~~p~f~r~~p~d~~q~~ai~~~~~~~~-----w~~vai 77 (848)
+|++|| .|..+.........+. .++|+|......+.......+.+..+..++...+..+++++...| -+++++
T Consensus 63 ~vdgiii~~~~~~~~~~~~~~~~-~~iPvV~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~~~~i~~ 141 (304)
T 3o1i_D 63 GANAIILGTVDPHAYEHNLKSWV-GNTPVFATVNQLDLDEEQSTLLKGEVGVDWYWMGYEAGKYLAERHPKGSGKTNIAL 141 (304)
T ss_dssp TCSEEEECCSSTTSSTTTHHHHT-TTSCEEECSSCCCCCTTTGGGEEEECCCCHHHHHHHHHHHHHTTSBTTTCCEEEEE
T ss_pred CCCEEEEeCCChhHHHHHHHHHc-CCCCEEEecCCCcccccCCCceEEEEecCHHHHHHHHHHHHHHhcccCCCCCEEEE
Confidence 566665 5554442222234445 899999875443322222334566777888888888999988888 899999
Q ss_pred EEEcC--CCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHh-cCCCeEEEEEccCCcHHHHHHHHHHcCC
Q 003093 78 IYVDD--DHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVA-LTESRIIVVHTHYNRGPVVFHVAQYLGM 154 (848)
Q Consensus 78 i~~dd--~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~-~~~~~viv~~~~~~~~~~~~~~a~~~g~ 154 (848)
+.... .......+.|.+++++.|+++.... ....+.......+.++. ...+++ | +++...+..++++++++|+
T Consensus 142 i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~a-i-~~~d~~a~g~~~al~~~g~ 217 (304)
T 3o1i_D 142 LLGPRTRGGTKPVTTGFYEAIKNSDIHIVDSF--WADNDKELQRNLVQRVIDMGNIDY-I-VGSAVAIEAAISELRSADK 217 (304)
T ss_dssp ECCCC-----CHHHHHHHHTTTTBTEEEEECC--CCCSCHHHHHHHHHHHHHHSCCSE-E-EECHHHHHHHHHHHTTTTC
T ss_pred EECCCCcchHHHHHHHHHHHHhcCCCEEEEee--cCCCcHHHHHHHHHHHHcCCCCCE-E-EecCcchHHHHHHHHhcCC
Confidence 97432 3445668899999999998876543 22223233333333332 346788 4 4455677789999999998
Q ss_pred C
Q 003093 155 L 155 (848)
Q Consensus 155 ~ 155 (848)
.
T Consensus 218 ~ 218 (304)
T 3o1i_D 218 T 218 (304)
T ss_dssp G
T ss_pred C
Confidence 5
No 120
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=96.13 E-value=0.019 Score=59.25 Aligned_cols=154 Identities=12% Similarity=0.023 Sum_probs=94.9
Q ss_pred CCeEEEEccCCchhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEeccCChHHHHHHHHHHHHHcCcEEEEEEEEcC
Q 003093 3 GQTVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDD 82 (848)
Q Consensus 3 ~~V~aiIGp~~S~~~~ava~i~~~~~vP~Is~~at~p~ls~~~~p~f~r~~p~d~~q~~ai~~~~~~~~w~~vaii~~dd 82 (848)
++|++||-.........+...+.+.++|+|......+ + +.+..+..++...+..+++++...|.++++++....
T Consensus 75 ~~vdgii~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~---~---~~~~~V~~d~~~~~~~a~~~L~~~G~~~I~~i~~~~ 148 (293)
T 2iks_A 75 RQVDAIIVSTSLPPEHPFYQRWANDPFPIVALDRALD---R---EHFTSVVGADQDDAEMLAEELRKFPAETVLYLGALP 148 (293)
T ss_dssp TTCSEEEECCSSCTTCHHHHTTTTSSSCEEEEESCCC---T---TTCEEEEECHHHHHHHHHHHHHTSCCSSEEEEEECT
T ss_pred cCCCEEEEeCCCCCcHHHHHHHHhCCCCEEEECCccC---c---CCCCEEEecCHHHHHHHHHHHHHCCCCEEEEEecCc
Confidence 4677777533322222233445678999998765322 1 123345567777788888888778999999998653
Q ss_pred C--CccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcC--CCeEEEEEccCCcHHHHHHHHHHcCCCCCC
Q 003093 83 D--HGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALT--ESRIIVVHTHYNRGPVVFHVAQYLGMLGTG 158 (848)
Q Consensus 83 ~--~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~--~~~viv~~~~~~~~~~~~~~a~~~g~~~~~ 158 (848)
. ......+.|.+++++.|+..... +....+..+-...+.++.+. .+++|+.. +...+..++++++++|+..++
T Consensus 149 ~~~~~~~R~~Gf~~~l~~~g~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~-~d~~a~g~~~al~~~g~~vP~ 225 (293)
T 2iks_A 149 ELSVSFLREQGFRTAWKDDPREVHFL--YANSYEREAAAQLFEKWLETHPMPQALFTT-SFALLQGVMDVTLRRDGKLPS 225 (293)
T ss_dssp TSHHHHHHHHHHHHHHTTCCCCEEEE--EESSSCHHHHHHHHHHHTTTSCCCSEEEES-SHHHHHHHHHHHHHHHSSCCS
T ss_pred ccccHHHHHHHHHHHHHHcCCCccEE--EcCCCChhhHHHHHHHHHhcCCCCCEEEEC-ChHHHHHHHHHHHHcCCCCCC
Confidence 3 34556788999999999743322 11122334444555665443 46776653 445577789999999987554
Q ss_pred e-EEEecC
Q 003093 159 Y-VWIATS 165 (848)
Q Consensus 159 ~-~wi~~~ 165 (848)
- ..++.|
T Consensus 226 di~vvg~d 233 (293)
T 2iks_A 226 DLAIATFG 233 (293)
T ss_dssp SCEEEEES
T ss_pred ceEEEEEC
Confidence 3 344434
No 121
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=96.12 E-value=0.061 Score=55.70 Aligned_cols=157 Identities=15% Similarity=0.039 Sum_probs=97.3
Q ss_pred CCeEEEE-ccCCchhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEeccCChHHHHHHHHHHHHHc--CcEEEEEEE
Q 003093 3 GQTVAII-GPQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHY--GWREVIAIY 79 (848)
Q Consensus 3 ~~V~aiI-Gp~~S~~~~ava~i~~~~~vP~Is~~at~p~ls~~~~p~f~r~~p~d~~q~~ai~~~~~~~--~w~~vaii~ 79 (848)
.+|++|| -|..+.........+.+.++|+|......+. .+.+..+..++...+..+++++... |-++++++.
T Consensus 60 ~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~-----~~~~~~V~~d~~~~g~~~~~~l~~~~~g~~~i~~i~ 134 (305)
T 3g1w_A 60 KNPAGIAISAIDPVELTDTINKAVDAGIPIVLFDSGAPD-----SHAHSFLGTNNYNAGMNAAYKMAELLDGEGEVAVIT 134 (305)
T ss_dssp HCCSEEEECCSSTTTTHHHHHHHHHTTCCEEEESSCCTT-----SCCSCEEECCHHHHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred hCCCEEEEcCCCHHHHHHHHHHHHHCCCcEEEECCCCCC-----CceeEEECcCHHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 3566666 4444443344455566789999987654332 1223445677888888899888777 999999998
Q ss_pred EcCC-CccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcC--CCeEEEEEccCCcHHHHHHHHHHcCCCC
Q 003093 80 VDDD-HGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALT--ESRIIVVHTHYNRGPVVFHVAQYLGMLG 156 (848)
Q Consensus 80 ~dd~-~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~--~~~viv~~~~~~~~~~~~~~a~~~g~~~ 156 (848)
.... ......+.|.+++++.|..+.....+....+..+....+.++... ++++|+. .+...+..++++++++|+.
T Consensus 135 ~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~- 212 (305)
T 3g1w_A 135 LPNQLNHQERTTGFKETLEAEFPAIEVIAVEDGRGDSLHSRRVAHQLLEDYPNLAGIFA-TEANGGVGVGDAVRLESRA- 212 (305)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHCTTEEEEEEEECTTCHHHHHHHHHHHHHHCTTEEEEEE-SSHHHHHHHHHHHHHTTCT-
T ss_pred CCCcccHHHHHHHHHHHHHhhCCCCEEEEEecCCCCHHHHHHHHHHHHHhCCCceEEEE-CCCcchhhHHHHHHhcCCC-
Confidence 4432 233456789999998876554332222222334444455555433 4555543 4445677899999999986
Q ss_pred CCeEEEecCc
Q 003093 157 TGYVWIATSW 166 (848)
Q Consensus 157 ~~~~wi~~~~ 166 (848)
.+...++.|.
T Consensus 213 ~di~vig~d~ 222 (305)
T 3g1w_A 213 GEIQIISFDT 222 (305)
T ss_dssp TTSEEEEESC
T ss_pred CCeEEEEeCC
Confidence 4455555443
No 122
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=96.11 E-value=0.052 Score=56.07 Aligned_cols=152 Identities=10% Similarity=0.077 Sum_probs=94.0
Q ss_pred CCCeEEEEccCCchhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEeccCChHHHHHHHHHHHHHcCcEEEEEEEEc
Q 003093 2 EGQTVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVD 81 (848)
Q Consensus 2 ~~~V~aiIGp~~S~~~~ava~i~~~~~vP~Is~~at~p~ls~~~~p~f~r~~p~d~~q~~ai~~~~~~~~w~~vaii~~d 81 (848)
+.+|++||=...... ......+...++|+|......+... . .+..+..++..-+..+++++...|-++++++...
T Consensus 66 ~~~vdGiI~~~~~~~-~~~~~~l~~~~iPvV~i~~~~~~~~-~---~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~ 140 (295)
T 3hcw_A 66 QRMVDAFILLYSKEN-DPIKQMLIDESMPFIVIGKPTSDID-H---QFTHIDNDNILASENLTRHVIEQGVDELIFITEK 140 (295)
T ss_dssp TTCCSEEEESCCCTT-CHHHHHHHHTTCCEEEESCCCSSGG-G---GSCEEEECHHHHHHHHHHHHHHHCCSEEEEEEES
T ss_pred hCCcCEEEEcCcccC-hHHHHHHHhCCCCEEEECCCCcccc-C---CceEEecCcHHHHHHHHHHHHHcCCccEEEEcCC
Confidence 356777763222211 2334556678999998754332110 0 2233456677778888888877899999999865
Q ss_pred CCC--ccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhc-----CCCeEEEEEccCCcHHHHHHHHHHcCC
Q 003093 82 DDH--GRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVAL-----TESRIIVVHTHYNRGPVVFHVAQYLGM 154 (848)
Q Consensus 82 d~~--g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~-----~~~~viv~~~~~~~~~~~~~~a~~~g~ 154 (848)
... .....+.|.+++++.|+.+.... ...+..+....+.++.. ..+++|+. .+...+..++++++++|+
T Consensus 141 ~~~~~~~~R~~Gf~~al~~~g~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~ai~~-~~d~~A~g~~~al~~~g~ 216 (295)
T 3hcw_A 141 GNFEVSKDRIQGFETVASQFNLDYQIIE---TSNEREVILNYMQNLHTRLKDPNIKQAIIS-LDAMLHLAILSVLYELNI 216 (295)
T ss_dssp SCCHHHHHHHHHHHHHHHHTTCEEEEEE---ECSCHHHHHHHHHHHHHHHTCTTSCEEEEE-SSHHHHHHHHHHHHHTTC
T ss_pred ccchhHHHHHHHHHHHHHHcCCCeeEEe---ccCCHHHHHHHHHHHHhhcccCCCCcEEEE-CChHHHHHHHHHHHHcCC
Confidence 443 44567899999999998875221 11233333334444432 25777664 455567889999999998
Q ss_pred CCCCeEEE
Q 003093 155 LGTGYVWI 162 (848)
Q Consensus 155 ~~~~~~wi 162 (848)
..++-+-|
T Consensus 217 ~vP~di~v 224 (295)
T 3hcw_A 217 EIPKDVMT 224 (295)
T ss_dssp CTTTTEEE
T ss_pred CCCCceEE
Confidence 76554433
No 123
>2x7q_A Ca3427, possible thiamine biosynthesis enzyme; unknown function; 2.00A {Candida albicans} PDB: 2x7p_A
Probab=96.09 E-value=0.021 Score=59.93 Aligned_cols=108 Identities=16% Similarity=0.199 Sum_probs=63.0
Q ss_pred CCCCChHHhhcCCCCeeEEe-CchHHH---HHHhhhCCC-ccCcccCCCHHHHHHHhhcCCCCC----ceEEEEccHHHH
Q 003093 590 SPIKGIDSLRSSNYPIGYQV-NSFARN---YLVDELNID-ESRLVPLNSPEEYAKALKDGPHKG----GVAAVVDDRAYA 660 (848)
Q Consensus 590 ~~i~sl~dL~~s~~~i~~~~-~s~~~~---~l~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~----~~~a~~~~~~~~ 660 (848)
++|++++|| ++||+.. |+.... .+.+..+.. ..+++.+++..+...+|.. | ++||++.+....
T Consensus 110 ~~i~s~~DL----K~i~~~~~gs~~~~~~~~l~~~~Gl~~dv~~v~~~~~~~~~~al~~----G~~~~~vDa~~~ep~~~ 181 (321)
T 2x7q_A 110 DDVTDAKQL----KRIGVSRIGSGSYVMSFVLAHQLGVPSFDQFQVLSNFKNLRDSVNL----KDGVEGSDAFMWEYFTS 181 (321)
T ss_dssp TTCSSGGGC----CEEEESSTTSHHHHHHHHHHHHHTSCCCCEEEECCSHHHHHHHHTT----CTTSCCCSEEEEEHHHH
T ss_pred CCCCChHHc----ceEEeeCCCcHHHHHHHHHHHhcCCCcceEEEEcCChHHHHHHHHc----CCCccceEEEEecCccc
Confidence 379999999 5799986 654332 222233433 2356667788899999999 8 899987665444
Q ss_pred HHHHhcCCcEEEeCCccccCC-ceeeecCC----CC-----chHHHHHHHHhhhcc
Q 003093 661 ELFLSTRCEFSIVGQVFTKNG-WGFAFPRD----SP-----LAVDISTAILKLSEN 706 (848)
Q Consensus 661 ~~~~~~~~~l~~~~~~~~~~~-~~~~~~k~----sp-----l~~~in~~i~~l~e~ 706 (848)
..... ...+..+.+...+.+ .+++++++ .| +...+.+++..+.++
T Consensus 182 ~~~~~-~g~~~~~~d~~~~~~~~~l~~~~~~~~~~p~~v~~~~~a~~~a~~~~~~~ 236 (321)
T 2x7q_A 182 KKYYD-NHEIKQIDQIYTPWSSWVVATSSDSLQAKSDVIKNFIDAVNQGIQYYNEH 236 (321)
T ss_dssp HHHHH-TTSEEEEEEEECSSCSEEEEEEHHHHHHSHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhcc-CCceEEccccCCCCceEEEEEcHHHHhhCHHHHHHHHHHHHHHHHHHHHC
Confidence 43333 334555544333322 35666654 33 344455555555543
No 124
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=96.02 E-value=0.041 Score=56.64 Aligned_cols=152 Identities=14% Similarity=0.072 Sum_probs=95.7
Q ss_pred CCCeEEEEccCCchhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEeccCChHHHHHHHHHHHHHcCcEEEEEEEEc
Q 003093 2 EGQTVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVD 81 (848)
Q Consensus 2 ~~~V~aiIGp~~S~~~~ava~i~~~~~vP~Is~~at~p~ls~~~~p~f~r~~p~d~~q~~ai~~~~~~~~w~~vaii~~d 81 (848)
+.+|++||-.........+.. ..+ ++|+|......+ + +.+-.+..++..-+..+++++...|-++++++...
T Consensus 64 ~~~vdgiIi~~~~~~~~~~~~-~~~-~iPvV~i~~~~~---~---~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~ 135 (289)
T 3k9c_A 64 RERCEAAILLGTRFDTDELGA-LAD-RVPALVVARASG---L---PGVGAVRGDDVAGITLAVDHLTELGHRNIAHIDGA 135 (289)
T ss_dssp TTTEEEEEEETCCCCHHHHHH-HHT-TSCEEEESSCCS---S---TTSEEEEECHHHHHHHHHHHHHHTTCCSEEEECCT
T ss_pred hCCCCEEEEECCCCCHHHHHH-HHc-CCCEEEEcCCCC---C---CCCCEEEeChHHHHHHHHHHHHHCCCCcEEEEeCC
Confidence 457888774332222233333 345 999998765432 1 22334566777778888888888899999999854
Q ss_pred CC-CccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhc--CCCeEEEEEccCCcHHHHHHHHHHcCCCCCC
Q 003093 82 DD-HGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVAL--TESRIIVVHTHYNRGPVVFHVAQYLGMLGTG 158 (848)
Q Consensus 82 d~-~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~--~~~~viv~~~~~~~~~~~~~~a~~~g~~~~~ 158 (848)
.. ......+.|.+++++.|+.+... .+....+..+-...+.++.+ ..+++|+. .+...+..++++++++|+..++
T Consensus 136 ~~~~~~~R~~Gf~~al~~~g~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~A~g~~~al~~~g~~vP~ 213 (289)
T 3k9c_A 136 DAPGGADRRAGFLAAMDRHGLSASAT-VVTGGTTETEGAEGMHTLLEMPTPPTAVVA-FNDRCATGVLDLLVRSGRDVPA 213 (289)
T ss_dssp TSTTHHHHHHHHHHHHHHTTCGGGEE-EECCCSSHHHHHHHHHHHHTSSSCCSEEEE-SSHHHHHHHHHHHHHTTCCTTT
T ss_pred CCccHHHHHHHHHHHHHHCCCCCCcc-EEECCCCHHHHHHHHHHHHcCCCCCCEEEE-CChHHHHHHHHHHHHcCCCCCC
Confidence 43 34456789999999999763221 22222233444455555554 35677654 4445677899999999987655
Q ss_pred eEEEe
Q 003093 159 YVWIA 163 (848)
Q Consensus 159 ~~wi~ 163 (848)
-+-|.
T Consensus 214 di~vi 218 (289)
T 3k9c_A 214 DISVV 218 (289)
T ss_dssp TCEEE
T ss_pred ceEEE
Confidence 44333
No 125
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=96.00 E-value=0.074 Score=54.44 Aligned_cols=153 Identities=8% Similarity=0.086 Sum_probs=90.4
Q ss_pred CCeEEEE-ccCCchhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEeccCChHHHHHHHHHHHHHc-C-cEEEEEEE
Q 003093 3 GQTVAII-GPQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHY-G-WREVIAIY 79 (848)
Q Consensus 3 ~~V~aiI-Gp~~S~~~~ava~i~~~~~vP~Is~~at~p~ls~~~~p~f~r~~p~d~~q~~ai~~~~~~~-~-w~~vaii~ 79 (848)
.+|++|| .|..+.........+.+.++|+|......+ +. +.+..+..++...+..+++++... | -++++++.
T Consensus 56 ~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~---~~--~~~~~V~~D~~~~g~~a~~~L~~~~gg~~~I~~i~ 130 (283)
T 2ioy_A 56 QKVDVLLINPVDSDAVVTAIKEANSKNIPVITIDRSAN---GG--DVVCHIASDNVKGGEMAAEFIAKALKGKGNVVELE 130 (283)
T ss_dssp TTCSEEEECCSSTTTTHHHHHHHHHTTCCEEEESSCCS---SS--CCSEEEEECHHHHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred cCCCEEEEeCCchhhhHHHHHHHHHCCCeEEEecCCCC---Cc--ceeEEEecChHHHHHHHHHHHHHHcCCCceEEEEE
Confidence 4677765 344433322333445678999998754321 11 122334556666678888887665 5 89999998
Q ss_pred EcCCC--ccchHHHHHHHHhcc-CcEEEEeeecCCCCChHHHHHHHHHHhcC--CCeEEEEEccCCcHHHHHHHHHHcCC
Q 003093 80 VDDDH--GRNGIAALGDTLAAK-RCRISFKAPLSVEATEDEITDLLVKVALT--ESRIIVVHTHYNRGPVVFHVAQYLGM 154 (848)
Q Consensus 80 ~dd~~--g~~~~~~l~~~l~~~-g~~v~~~~~~~~~~~~~d~~~~l~~i~~~--~~~viv~~~~~~~~~~~~~~a~~~g~ 154 (848)
..... .....+.|.+++++. |+++.... ....+..+-...+.++.+. .+++|+. .+...+..++++++++|+
T Consensus 131 g~~~~~~~~~R~~Gf~~al~~~~~~~~~~~~--~~~~~~~~~~~~~~~ll~~~~~~~ai~~-~nD~~A~g~~~al~~~G~ 207 (283)
T 2ioy_A 131 GIPGASAARDRGKGFDEAIAKYPDIKIVAKQ--AADFDRSKGLSVMENILQAQPKIDAVFA-QNDEMALGAIKAIEAANR 207 (283)
T ss_dssp CCTTCHHHHHHHHHHHHHHTTCTTEEEEEEE--ECTTCHHHHHHHHHHHHHHCSCCCEEEE-SSHHHHHHHHHHHHHTTC
T ss_pred CCCCCccHHHHHHHHHHHHHhCCCCEEEeec--cCCCCHHHHHHHHHHHHHhCCCccEEEE-CCchHHHHHHHHHHHCCC
Confidence 54332 345568899999998 88765322 1112233334445554433 4566543 444567788999999998
Q ss_pred CCCCeEEEecC
Q 003093 155 LGTGYVWIATS 165 (848)
Q Consensus 155 ~~~~~~wi~~~ 165 (848)
.+...++.|
T Consensus 208 --~di~viG~D 216 (283)
T 2ioy_A 208 --QGIIVVGFD 216 (283)
T ss_dssp --CCCEEEEEE
T ss_pred --CCcEEEEeC
Confidence 444444443
No 126
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=95.88 E-value=0.037 Score=58.53 Aligned_cols=153 Identities=7% Similarity=-0.015 Sum_probs=91.7
Q ss_pred CCeEEEEccCCchhHHHHHHhhc-cCCccEEecccCCCCCCCCCCCceEeccCChHHHHHHHHHHHHHcCcEEEEEEEEc
Q 003093 3 GQTVAIIGPQDAVTSHVVSHVAN-ELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVD 81 (848)
Q Consensus 3 ~~V~aiIGp~~S~~~~ava~i~~-~~~vP~Is~~at~p~ls~~~~p~f~r~~p~d~~q~~ai~~~~~~~~w~~vaii~~d 81 (848)
.+|++||-....... ....... ..++|+|......+. . ++...+..++..-+..+++++...|.+++++|...
T Consensus 113 ~~vdgiI~~~~~~~~-~~~~~l~~~~~iPvV~~~~~~~~---~--~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~g~ 186 (340)
T 1qpz_A 113 KRVDGLLVMCSEYPE-PLLAMLEEYRHIPMVVMDWGEAK---A--DFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGP 186 (340)
T ss_dssp TTCSEEEECCSCCCH-HHHHHHHTTTTSCEEEEEESSCC---C--SSSEEEECCHHHHHHHHHHHHHHHTCCCEEEECCC
T ss_pred CCCCEEEEeCCCCCh-HHHHHHHhhCCCCEEEEecccCC---C--CCCCEEEECHHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 467777742222111 2223333 369999987653321 1 22234556667777888888877799999999754
Q ss_pred CC--CccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhc--CCCeEEEEEccCCcHHHHHHHHHHcCCCCC
Q 003093 82 DD--HGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVAL--TESRIIVVHTHYNRGPVVFHVAQYLGMLGT 157 (848)
Q Consensus 82 d~--~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~--~~~~viv~~~~~~~~~~~~~~a~~~g~~~~ 157 (848)
.. ....-.+.|.+++++.|+.+.....+....+..+-...+.++.+ ..+++|+.. +...+..+++++++.|+..+
T Consensus 187 ~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~~-nd~~A~g~~~al~~~G~~vP 265 (340)
T 1qpz_A 187 LERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVFCG-GDIMAMGALCAADEMGLRVP 265 (340)
T ss_dssp TTSHHHHHHHHHHHHHHHHTTCCCCGGGBCCCCSSHHHHHHHHHHHHTSSSCCSEEEES-SHHHHHHHHHHHHHTTCCTT
T ss_pred CccccHHHHHHHHHHHHHHCCCCCChhheEeCCCCHHHHHHHHHHHHcCCCCCcEEEEC-CHHHHHHHHHHHHHcCCCCC
Confidence 33 34556788999999999764322112222223333445555544 357777754 44567779999999998755
Q ss_pred CeEEE
Q 003093 158 GYVWI 162 (848)
Q Consensus 158 ~~~wi 162 (848)
+-+-+
T Consensus 266 ~disv 270 (340)
T 1qpz_A 266 QDVSL 270 (340)
T ss_dssp TTCEE
T ss_pred CCeEE
Confidence 44333
No 127
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=95.86 E-value=0.0084 Score=63.32 Aligned_cols=147 Identities=12% Similarity=0.066 Sum_probs=90.3
Q ss_pred CCeEEEEccCCchhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEeccCChHHHHHHHHHHHHHcCcEEEEEEEEcC
Q 003093 3 GQTVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDD 82 (848)
Q Consensus 3 ~~V~aiIGp~~S~~~~ava~i~~~~~vP~Is~~at~p~ls~~~~p~f~r~~p~d~~q~~ai~~~~~~~~w~~vaii~~dd 82 (848)
++|++|| ....... ..+...++|+|......+. .. ..+..++...+..+++++...|.+++++|..+.
T Consensus 115 ~~vdgiI-~~~~~~~----~~l~~~~iPvV~~~~~~~~----~~---~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~ 182 (330)
T 3ctp_A 115 HRVAGII-ASRSQCE----DEYANIDIPVVAFENHILD----NI---ITISSDNYNGGRMAFDHLYEKGCRKILHIKGPE 182 (330)
T ss_dssp TTCSEEE-EETCCCS----GGGTTCCSCEEEESSCCCT----TS---CEEEECHHHHHHHHHHHHHHTTCCSEEEEECCT
T ss_pred CCCCEEE-ECCCCCH----HHHHhcCCCEEEEeccCCC----CC---CEEEeCHHHHHHHHHHHHHHCCCCeEEEEeCCc
Confidence 4688888 4332221 2345789999987654321 22 234556666678888888778999999998653
Q ss_pred C--CccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhc-CCCeEEEEEccCCcHHHHHHHHHHcCCCCCCe
Q 003093 83 D--HGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVAL-TESRIIVVHTHYNRGPVVFHVAQYLGMLGTGY 159 (848)
Q Consensus 83 ~--~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~-~~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~ 159 (848)
. ......+.|.+++++.|+.+. ...+....+..+-...+.++.+ .++++|+.. +...+..+++++++.|+..++-
T Consensus 183 ~~~~~~~R~~Gf~~al~~~g~~~~-~~~~~~~~~~~~~~~~~~~ll~~~~~~ai~~~-~d~~A~g~~~al~~~G~~vP~d 260 (330)
T 3ctp_A 183 VFEATELRYKGFLDGARAKDLEID-FIEFQHDFQVKMLEEDINSMKDIVNYDGIFVF-NDIAAATVMRALKKRGVSIPQE 260 (330)
T ss_dssp TCHHHHHHHHHHHHHHHHTTCCCE-EEECSSSCCGGGGGCCCTTGGGGGGSSEEEES-SHHHHHHHHHHHHHTTCCTTTT
T ss_pred cCccHHHHHHHHHHHHHHcCCCcc-eeEEcCCCCHHHHHHHHHHHhcCCCCcEEEEC-CHHHHHHHHHHHHHcCCCCCCC
Confidence 3 345667889999999998765 2222222111111122233333 357887754 3456777999999999876544
Q ss_pred EEEe
Q 003093 160 VWIA 163 (848)
Q Consensus 160 ~wi~ 163 (848)
+-+.
T Consensus 261 isvv 264 (330)
T 3ctp_A 261 VQII 264 (330)
T ss_dssp CEEE
T ss_pred eEEE
Confidence 4333
No 128
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=95.86 E-value=0.068 Score=55.48 Aligned_cols=151 Identities=9% Similarity=0.009 Sum_probs=89.8
Q ss_pred CCeEEEEccCCc-hhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEeccCChHHHHHHHHHHHHHcC---cEEEEEE
Q 003093 3 GQTVAIIGPQDA-VTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYG---WREVIAI 78 (848)
Q Consensus 3 ~~V~aiIGp~~S-~~~~ava~i~~~~~vP~Is~~at~p~ls~~~~p~f~r~~p~d~~q~~ai~~~~~~~~---w~~vaii 78 (848)
++|++||-...+ .........+...++|+|......+.. ...+++..+..++...+..+++++...| -++++++
T Consensus 57 ~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~--~~~~~~~~V~~D~~~~g~~a~~~L~~~g~g~~~~I~~i 134 (306)
T 2vk2_A 57 QGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVK--DKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVEL 134 (306)
T ss_dssp HTCSEEEECCSSSSSCHHHHHHHHHTTCCEEEESSCCCCS--CGGGSSEEEECCHHHHHHHHHHHHHHHHTTSCEEEEEE
T ss_pred cCCCEEEEeCCChhhHHHHHHHHHHCCCCEEEecCCCCCC--CccceEEEEecCHHHHHHHHHHHHHHhcCCCCCeEEEE
Confidence 467777653332 221233344566899999875543211 1111344566677777788888876665 7999999
Q ss_pred EEcCC--CccchHHHHHHHHhccCc-EEEEeeecCCCCChHHHHHHHHHHhc-----CCCeEEEEEccCCcHHHHHHHHH
Q 003093 79 YVDDD--HGRNGIAALGDTLAAKRC-RISFKAPLSVEATEDEITDLLVKVAL-----TESRIIVVHTHYNRGPVVFHVAQ 150 (848)
Q Consensus 79 ~~dd~--~g~~~~~~l~~~l~~~g~-~v~~~~~~~~~~~~~d~~~~l~~i~~-----~~~~viv~~~~~~~~~~~~~~a~ 150 (848)
..... ......+.|.+++++.|. ++... .....+..+-...+.++.+ ..+++|+.. +...+..++++++
T Consensus 135 ~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~--~~~~~~~~~~~~~~~~ll~~~~~~~~~~ai~~~-nd~~A~g~~~al~ 211 (306)
T 2vk2_A 135 QGTVGASVAIDRKKGFAEAIKNAPNIKIIRS--QSGDFTRSKGKEVMESFIKAENNGKNICMVYAH-NDDMVIGAIQAIK 211 (306)
T ss_dssp ECSTTCHHHHHHHHHHHHHTTTCTTEEEEEE--EECTTCHHHHHHHHHHHHHHTTTTTTCCEEEES-SHHHHHHHHHHHH
T ss_pred EcCCCChhHHHHHHHHHHHHhhCCCeEEEEe--ccCCCcHHHHHHHHHHHHHhCCCCCCeeEEEEC-CchHHHHHHHHHH
Confidence 85432 344567889999999985 33321 1111222333334444433 357777653 4456777999999
Q ss_pred HcCCCCCC
Q 003093 151 YLGMLGTG 158 (848)
Q Consensus 151 ~~g~~~~~ 158 (848)
+.|+..++
T Consensus 212 ~~G~~vP~ 219 (306)
T 2vk2_A 212 EAGLKPGK 219 (306)
T ss_dssp HTTCCBTT
T ss_pred HcCCCCCC
Confidence 99986554
No 129
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=95.72 E-value=0.041 Score=55.90 Aligned_cols=153 Identities=10% Similarity=0.014 Sum_probs=95.7
Q ss_pred CCeEEEEccCCchhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEeccCChHHHHHHHHHHHHHcCcEEEEEEEEcC
Q 003093 3 GQTVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDD 82 (848)
Q Consensus 3 ~~V~aiIGp~~S~~~~ava~i~~~~~vP~Is~~at~p~ls~~~~p~f~r~~p~d~~q~~ai~~~~~~~~w~~vaii~~dd 82 (848)
++|++||-.............+.+.++|+|......+. .. +-.+..++...+..+++++...|-++++++....
T Consensus 57 ~~vdgiIi~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~---~~---~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~ 130 (272)
T 3o74_A 57 RRCDALFVASCLPPEDDSYRELQDKGLPVIAIDRRLDP---AH---FCSVISDDRDASRQLAASLLSSAPRSIALIGARP 130 (272)
T ss_dssp TTCSEEEECCCCCSSCCHHHHHHHTTCCEEEESSCCCT---TT---CEEEEECHHHHHHHHHHHHHTTCCSEEEEEEECT
T ss_pred cCCCEEEEecCccccHHHHHHHHHcCCCEEEEccCCCc---cc---cCEEEEchHHHHHHHHHHHHHCCCcEEEEEecCC
Confidence 45666663222211233344566789999987554321 12 2335567777788888888888999999998654
Q ss_pred C--CccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhc--C-CCeEEEEEccCCcHHHHHHHHHHcCCCCC
Q 003093 83 D--HGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVAL--T-ESRIIVVHTHYNRGPVVFHVAQYLGMLGT 157 (848)
Q Consensus 83 ~--~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~--~-~~~viv~~~~~~~~~~~~~~a~~~g~~~~ 157 (848)
. ......+.|.+++++.|+.+.....-. .+..+....+.++.+ . .+++|+. .+...+..++++++++|+ .+
T Consensus 131 ~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~ai~~-~~d~~a~g~~~al~~~g~-vp 206 (272)
T 3o74_A 131 ELSVSQARAGGFDEALQGYTGEVRRYQGEA--FSRECGQRLMQQLIDDLGGLPDALVT-TSYVLLQGVFDTLQARPV-DS 206 (272)
T ss_dssp TSHHHHHHHHHHHHHTTTCCSEEEEEEESS--SSHHHHHHHHHHHHHHHTSCCSEEEE-SSHHHHHHHHHHHHTSCG-GG
T ss_pred CCccHHHHHHHHHHHHHHcCCChheeecCC--CCHHHHHHHHHHHHhcCCCCCcEEEE-eCchHHHHHHHHHHHcCC-Cc
Confidence 3 345567899999999998765432222 233444444444433 2 4787765 444567789999999998 44
Q ss_pred C-eEEEecC
Q 003093 158 G-YVWIATS 165 (848)
Q Consensus 158 ~-~~wi~~~ 165 (848)
+ ...++.+
T Consensus 207 ~di~vvg~d 215 (272)
T 3o74_A 207 RQLQLGTFG 215 (272)
T ss_dssp CCCEEEEES
T ss_pred cceEEEEeC
Confidence 4 4444444
No 130
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=95.71 E-value=0.011 Score=61.09 Aligned_cols=152 Identities=12% Similarity=0.031 Sum_probs=92.5
Q ss_pred CCeEEEEccCCchhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEeccCChHHHHHHHHHHHHHcCcEEEEEEEEcC
Q 003093 3 GQTVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDD 82 (848)
Q Consensus 3 ~~V~aiIGp~~S~~~~ava~i~~~~~vP~Is~~at~p~ls~~~~p~f~r~~p~d~~q~~ai~~~~~~~~w~~vaii~~dd 82 (848)
++|++||-..... .......+.+.++|+|......+. +.+..+..++...+..+++++...|-++++++....
T Consensus 63 ~~vdgiIi~~~~~-~~~~~~~~~~~~iPvV~~~~~~~~------~~~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~ 135 (291)
T 3egc_A 63 RRVDGLILAPSEG-EHDYLRTELPKTFPIVAVNRELRI------PGCGAVLSENVRGARTAVEYLIARGHTRIGAIVGSA 135 (291)
T ss_dssp TTCSEEEECCCSS-CCHHHHHSSCTTSCEEEESSCCCC------TTCEEEEECHHHHHHHHHHHHHHTTCCSEEEECSCT
T ss_pred CCCCEEEEeCCCC-ChHHHHHhhccCCCEEEEecccCC------CCCCEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCC
Confidence 4677776433222 334455667789999987654321 223445667777888888998888999999997543
Q ss_pred C--CccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhc--CCCeEEEEEccCCcHHHHHHHHHHcCCCCCC
Q 003093 83 D--HGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVAL--TESRIIVVHTHYNRGPVVFHVAQYLGMLGTG 158 (848)
Q Consensus 83 ~--~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~--~~~~viv~~~~~~~~~~~~~~a~~~g~~~~~ 158 (848)
. ......+.|.+++++.|+.+..........+..+....+.++.+ .++++|+. .+...+..++++++++|+..++
T Consensus 136 ~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP~ 214 (291)
T 3egc_A 136 GLMTSRERLKGFRAAMSAAGLPVRQEWIAAGGVRADNGRDGAIKVLTGADRPTALLT-SSHRITEGAMQALNVLGLRYGP 214 (291)
T ss_dssp TSHHHHHHHHHHHHHHHHTTCCCCGGGEEC------CCHHHHHHHHTC-CCCSEEEE-SSHHHHHHHHHHHHHHTCCBTT
T ss_pred CCcCHHHHHHHHHHHHHHcCCCCCHHHeEeCCCChhHHHHHHHHHHhCCCCCcEEEE-CCcHHHHHHHHHHHHcCCCCCC
Confidence 2 34556788999999998764211111111111111223333332 45777764 4555677899999999987554
Q ss_pred eEEE
Q 003093 159 YVWI 162 (848)
Q Consensus 159 ~~wi 162 (848)
-+-|
T Consensus 215 di~v 218 (291)
T 3egc_A 215 DVEI 218 (291)
T ss_dssp TBEE
T ss_pred ceEE
Confidence 4433
No 131
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=95.71 E-value=0.0074 Score=53.06 Aligned_cols=76 Identities=18% Similarity=0.200 Sum_probs=60.3
Q ss_pred HHHHHHHhhhhhcccCCCCCCCCCCCcchhhhhHHHHhhhcC--ccccccchhHHHHHHHHhhhhhhhccccceeeeeee
Q 003093 507 FLAVGAVVWILEHRLNDEFRGPPKRQVVTIFWFSFSTMFFAH--KEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILT 584 (848)
Q Consensus 507 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt 584 (848)
+++.+.++|.+|+.. .++...++.+++|+++.++...| .-.|.+..+|++.++|.++++.+.+...+.+++.++
T Consensus 40 ~~~~a~~~~~~E~~~----~~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~ 115 (122)
T 2ih3_C 40 LLAGSYLAVLAERGA----PGAQLITYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFV 115 (122)
T ss_dssp HHHHHHHHHHHHTTS----TTCCCCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhheeeecC----CCCccCccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555677777643 23345679999999999998665 558999999999999999999999999999888776
Q ss_pred ec
Q 003093 585 VQ 586 (848)
Q Consensus 585 ~~ 586 (848)
..
T Consensus 116 ~~ 117 (122)
T 2ih3_C 116 GR 117 (122)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 132
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=95.53 E-value=0.035 Score=57.38 Aligned_cols=154 Identities=10% Similarity=0.030 Sum_probs=95.2
Q ss_pred CCeEEEEc-cCCchhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEeccCChHHHHHHHHHHHHHcCcEEEEEEEEc
Q 003093 3 GQTVAIIG-PQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVD 81 (848)
Q Consensus 3 ~~V~aiIG-p~~S~~~~ava~i~~~~~vP~Is~~at~p~ls~~~~p~f~r~~p~d~~q~~ai~~~~~~~~w~~vaii~~d 81 (848)
.+|++||= |..... .....+.+.++|+|......+ .. .+-.+..++...+..+++++...|-++++++...
T Consensus 64 ~~vdGiIi~~~~~~~--~~~~~l~~~~iPvV~~~~~~~---~~---~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~ 135 (294)
T 3qk7_A 64 RRVDALIVAHTQPED--FRLQYLQKQNFPFLALGRSHL---PK---PYAWFDFDNHAGASLAVKRLLELGHQRIAFVSTD 135 (294)
T ss_dssp TCCSEEEECSCCSSC--HHHHHHHHTTCCEEEESCCCC---SS---CCEEEEECHHHHHHHHHHHHHHTTCCCEEEEEES
T ss_pred CCCCEEEEeCCCCCh--HHHHHHHhCCCCEEEECCCCC---CC---CCCEEEcChHHHHHHHHHHHHHCCCceEEEEeCC
Confidence 46777663 332222 334556678999998765421 12 2334566777778888888888899999999865
Q ss_pred CCC--ccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhc--CCCeEEEEEccCCcHHHHHHHHHHcCCCCC
Q 003093 82 DDH--GRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVAL--TESRIIVVHTHYNRGPVVFHVAQYLGMLGT 157 (848)
Q Consensus 82 d~~--g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~--~~~~viv~~~~~~~~~~~~~~a~~~g~~~~ 157 (848)
... ...-.+.|.+++++.|+.+.....+....+..+-...+.++.+ ..+++|+. ++...+..++++++++|+..+
T Consensus 136 ~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~nd~~A~g~~~al~~~G~~vP 214 (294)
T 3qk7_A 136 ARISYVDQRLQGYVQTMSEAGLMPLAGYLQKADPTRPGGYLAASRLLALEVPPTAIIT-DCNMLGDGVASALDKAGLLGG 214 (294)
T ss_dssp SCCHHHHHHHHHHHHHHHTTTCCCCTTCEEEECSSHHHHHHHHHHHHHSSSCCSEEEE-SSHHHHHHHHHHHHHTTCSST
T ss_pred cccchHHHHHHHHHHHHHHCCCCCChhHeecCCCCHHHHHHHHHHHHcCCCCCcEEEE-CCHHHHHHHHHHHHHcCCCCC
Confidence 433 3456789999999999764211111111222333444555443 35777664 445667789999999999765
Q ss_pred CeE-EEecC
Q 003093 158 GYV-WIATS 165 (848)
Q Consensus 158 ~~~-wi~~~ 165 (848)
+-+ .++-|
T Consensus 215 ~di~vig~D 223 (294)
T 3qk7_A 215 EGISLIAYD 223 (294)
T ss_dssp TSCEEEEET
T ss_pred CceEEEeec
Confidence 443 44434
No 133
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=95.46 E-value=0.094 Score=53.87 Aligned_cols=145 Identities=9% Similarity=-0.001 Sum_probs=92.0
Q ss_pred CCeEEEEc-cCCchhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEeccCChHHHHHHHHHHHHH-c-CcE-----E
Q 003093 3 GQTVAIIG-PQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDH-Y-GWR-----E 74 (848)
Q Consensus 3 ~~V~aiIG-p~~S~~~~ava~i~~~~~vP~Is~~at~p~ls~~~~p~f~r~~p~d~~q~~ai~~~~~~-~-~w~-----~ 74 (848)
.+|++||- |............+.+.++|+|......+. .+.+..+..++...+..+++++.. . |-+ +
T Consensus 63 ~~vdgiI~~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~-----~~~~~~V~~D~~~~g~~~~~~l~~~~~g~~~~~~~~ 137 (293)
T 3l6u_A 63 LKVDAIFITTLDDVYIGSAIEEAKKAGIPVFAIDRMIRS-----DAVVSSITSNNQMIGEQLASYIKNELIKQTGRSTGR 137 (293)
T ss_dssp TTCSEEEEECSCTTTTHHHHHHHHHTTCCEEEESSCCCC-----TTCSEEEEECHHHHHHHHHHHHHHHHHHHHSCSCEE
T ss_pred cCCCEEEEecCChHHHHHHHHHHHHcCCCEEEecCCCCC-----CcceeEEecCHHHHHHHHHHHHHHHhccCCCCCCce
Confidence 45666653 333333334455666779999987654332 123445667778888888888765 5 666 9
Q ss_pred EEEEEEcCC--CccchHHHHHHHHhcc-CcEEEEeeecCCCCChHHHHHHHHHHhcC--CCeEEEEEccCCcHHHHHHHH
Q 003093 75 VIAIYVDDD--HGRNGIAALGDTLAAK-RCRISFKAPLSVEATEDEITDLLVKVALT--ESRIIVVHTHYNRGPVVFHVA 149 (848)
Q Consensus 75 vaii~~dd~--~g~~~~~~l~~~l~~~-g~~v~~~~~~~~~~~~~d~~~~l~~i~~~--~~~viv~~~~~~~~~~~~~~a 149 (848)
++++..... ......+.|.+++++. |+++..... ...+..+....+.++... ++++|+. .+...+..+++++
T Consensus 138 i~~i~g~~~~~~~~~R~~gf~~~l~~~~g~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al 214 (293)
T 3l6u_A 138 IVEITGTANVYTTNERHRGFLKGIENEPTLSIVDSVS--GNYDPVTSERVMRQVIDSGIPFDAVYC-HNDDIAMGVLEAL 214 (293)
T ss_dssp EEEEECSTTCHHHHHHHHHHHHHHTTCTTEEEEEEEE--CTTCHHHHHHHHHHHHHTTCCCSEEEE-SSHHHHHHHHHHH
T ss_pred EEEEECCCCCchHHHHHHHHHHHHHhCCCcEEeeecc--CCCCHHHHHHHHHHHHHhCCCCCEEEE-CCchHHHHHHHHH
Confidence 999984432 3445678999999999 988765422 222334444555555443 4666554 4445677899999
Q ss_pred HHcCCC
Q 003093 150 QYLGML 155 (848)
Q Consensus 150 ~~~g~~ 155 (848)
+++|+.
T Consensus 215 ~~~g~~ 220 (293)
T 3l6u_A 215 KKAKIS 220 (293)
T ss_dssp HHTTCC
T ss_pred HhCCCC
Confidence 999984
No 134
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=95.44 E-value=0.039 Score=57.27 Aligned_cols=148 Identities=16% Similarity=0.090 Sum_probs=91.7
Q ss_pred CCCeEEEEccCCchhHH-HHHHhhccCCccEEecccCCCCCCCCCCCceEeccCChHHHHHHHHHHHHHcCcEEEEEEEE
Q 003093 2 EGQTVAIIGPQDAVTSH-VVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYV 80 (848)
Q Consensus 2 ~~~V~aiIGp~~S~~~~-ava~i~~~~~vP~Is~~at~p~ls~~~~p~f~r~~p~d~~q~~ai~~~~~~~~w~~vaii~~ 80 (848)
+.+|++||=........ .+..+.+ ++|+|......+. ..+ .+..++...+..+++++...|-++++++..
T Consensus 69 ~~~vdgiI~~~~~~~~~~~~~~l~~--~iPvV~i~~~~~~----~~~---~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~ 139 (303)
T 3kke_A 69 EGRVDGVLLQRREDFDDDMLAAVLE--GVPAVTINSRVPG----RVG---SVILDDQKGGGIATEHLITLGHSRIAFISG 139 (303)
T ss_dssp SCSSSEEEECCCTTCCHHHHHHHHT--TSCEEEESCCCTT----CCC---EEEECHHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred hCCCcEEEEecCCCCcHHHHHHHhC--CCCEEEECCcCCC----CCC---EEEECcHHHHHHHHHHHHHCCCCeEEEEeC
Confidence 35677776332222223 4444444 9999987654432 222 345667777888888888889999999985
Q ss_pred cCC--CccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHH-----hc--CCCeEEEEEccCCcHHHHHHHHHH
Q 003093 81 DDD--HGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKV-----AL--TESRIIVVHTHYNRGPVVFHVAQY 151 (848)
Q Consensus 81 dd~--~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i-----~~--~~~~viv~~~~~~~~~~~~~~a~~ 151 (848)
... ......+.|.+++++.|+.+..........+..+-...+.++ .. ..+++|+. .+...+..+++++++
T Consensus 140 ~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~ai~~-~nd~~A~g~~~al~~ 218 (303)
T 3kke_A 140 TAIHDTAQRRKEGYLETLASAGLRSEAAWVVDAGWEADAGSAALNTLYRGANLGKPDGPTAVVV-ASVNAAVGALSTALR 218 (303)
T ss_dssp CSSCHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHHHHHHCTTSTTSCSEEEE-SSHHHHHHHHHHHHH
T ss_pred CCcCccHHHHHHHHHHHHHHcCCCCCcceEEecCCChHHHHHHHHHhcchhhhcCCCCCcEEEE-CCHHHHHHHHHHHHH
Confidence 433 344567899999999998653111111112334444555665 43 34677654 344567789999999
Q ss_pred cCCCCCCe
Q 003093 152 LGMLGTGY 159 (848)
Q Consensus 152 ~g~~~~~~ 159 (848)
+|+..++-
T Consensus 219 ~G~~vP~d 226 (303)
T 3kke_A 219 LGLRVPED 226 (303)
T ss_dssp TTCCTTTT
T ss_pred cCCCCCCc
Confidence 99875543
No 135
>3jv9_A OXYR, transcriptional regulator, LYSR family; LYSR-type transcriptional regulator, LTTR, redox, structural genomics, OPPF; 2.39A {Neisseria meningitidis}
Probab=95.43 E-value=0.12 Score=49.97 Aligned_cols=192 Identities=12% Similarity=0.059 Sum_probs=114.6
Q ss_pred ceEEEEecCCCCccceEEeCCCcceeeeeHHHHHHHHHhC-CCCcceEEeeCCCCCCCCChhHHHHHHhcCeeeEEeece
Q 003093 376 RHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLL-PYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDI 454 (848)
Q Consensus 376 ~~lrv~v~~~~~~~p~~~~~~~~~~~G~~~dll~~i~~~l-~~~~~~~~~~~~~~~~n~s~~~~i~~l~~g~~D~~~~~~ 454 (848)
.+||||+... . ...+-.+++..+.+.. +.+ +.... ++...+.++|.+|++|+++...
T Consensus 4 g~l~Ig~~~~--~-----------~~~~l~~~l~~~~~~~P~i~--i~i~~-------~~~~~~~~~l~~g~~Dl~i~~~ 61 (219)
T 3jv9_A 4 GAFKLGLIFT--V-----------APYLLPKLIVSLRRTAPKMP--LMLEE-------NYTHTLTESLKRGDVDAIIVAE 61 (219)
T ss_dssp CCEEEEEETT--T-----------HHHHHHHHHHHHHHHSTTCC--EEEEE-------ECHHHHHHHHHHTSSSEEEEES
T ss_pred CcEEEEEcch--h-----------hHHHHHHHHHHHHHHCCCcE--EEEEe-------CCcHHHHHHHHcCCCCEEEEcC
Confidence 4688887631 1 1235567788887776 444 44443 3478899999999999998744
Q ss_pred eeecCceeeeeecccccccceEEEEeccCCCCCcccccccCchhhHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCcc
Q 003093 455 AIITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKRQVV 534 (848)
Q Consensus 455 ~~t~~R~~~~dfs~p~~~~~~~~v~~~~~~~~~~~~fl~PF~~~vW~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 534 (848)
.... ..+ -..+.....+++++++..+..
T Consensus 62 ~~~~---~~~-~~~~l~~~~~~~v~~~~~pl~------------------------------------------------ 89 (219)
T 3jv9_A 62 PFQE---PGI-VTEPLYDEPFFVIVPKGHSFE------------------------------------------------ 89 (219)
T ss_dssp SCCC---TTE-EEEEEEEEEEEEEEETTCGGG------------------------------------------------
T ss_pred CCCC---CCe-eEEEeeeceEEEEEeCCCCcc------------------------------------------------
Confidence 3222 222 246777888999998765110
Q ss_pred hhhhhHHHHhhhcCccccccchhHHHHHHHHhhhhhhhccccceeeeeeeeccccCCCCChHHhhcCCCCeeE-EeCchH
Q 003093 535 TIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGY-QVNSFA 613 (848)
Q Consensus 535 ~~~~~~~~~l~~~~~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~s~~~i~~-~~~s~~ 613 (848)
....-+++||. +.++.. ..++..
T Consensus 90 ------------------------------------------------------~~~~~~~~~L~--~~~~i~~~~~~~~ 113 (219)
T 3jv9_A 90 ------------------------------------------------------ELDAVSPRMLG--EEQVLLLTEGNCM 113 (219)
T ss_dssp ------------------------------------------------------TSSSCCSSTTS--SSCEEEECTTCHH
T ss_pred ------------------------------------------------------cCCCCCHHHhc--CCcEEEecCCccH
Confidence 02234577887 555443 344444
Q ss_pred HHHHHhhhC--------CCccCcccCCCHHHHHHHhhcCCCCCceEEEEccHHHHHHHHhcCCcEEEeCC--ccccCCce
Q 003093 614 RNYLVDELN--------IDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRCEFSIVGQ--VFTKNGWG 683 (848)
Q Consensus 614 ~~~l~~~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~ 683 (848)
...+.+... ........+++.+...+++.. |...+++-+..... + +..++..+.. ......++
T Consensus 114 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~----g~gi~~~p~~~~~~-~--~~~~l~~~~~~~~~~~~~~~ 186 (219)
T 3jv9_A 114 RDQVLSSCSELAAKQRIQGLTNTLQGSSINTIRHMVAS----GLAISVLPATALTE-N--DHMLFSIIPFEGTPPSRRVV 186 (219)
T ss_dssp HHHHHHHCSTTHHHHHHHTTTSSCEESSHHHHHHHHHH----TSCEEEEEGGGCCT-T--CTTTEEEECCSSSCCEEEEE
T ss_pred HHHHHHHHHhhhhhhccCCCCceEEeCCHHHHHHHHHc----CCcEEehhHHHHHh-c--cCCcEEEEecCCCCcceeEE
Confidence 444433222 122344567899999999999 66667766554433 2 3345665543 33344677
Q ss_pred eeecCCCCchHHHHHHHHhhh
Q 003093 684 FAFPRDSPLAVDISTAILKLS 704 (848)
Q Consensus 684 ~~~~k~spl~~~in~~i~~l~ 704 (848)
++.+++......+...+..+.
T Consensus 187 l~~~~~~~~~~~~~~~~~~l~ 207 (219)
T 3jv9_A 187 LAYRRNFVRPKALSAMKAAIM 207 (219)
T ss_dssp EEEETTCSCHHHHHHHHHHHH
T ss_pred EEEecCccccHHHHHHHHHHH
Confidence 888888765555554444443
No 136
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=95.39 E-value=0.04 Score=57.13 Aligned_cols=162 Identities=9% Similarity=-0.006 Sum_probs=93.4
Q ss_pred CCeEEEE-ccCCchhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEeccCChHHHHHHHHHHHH-HcCcE-----EE
Q 003093 3 GQTVAII-GPQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVD-HYGWR-----EV 75 (848)
Q Consensus 3 ~~V~aiI-Gp~~S~~~~ava~i~~~~~vP~Is~~at~p~ls~~~~p~f~r~~p~d~~q~~ai~~~~~-~~~w~-----~v 75 (848)
++|++|| -|..+.........+.+.++|+|......+.......+.+..+..++...+..+++++. ..|-+ ++
T Consensus 56 ~~vdgiii~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~~g~~~~~~~~i 135 (306)
T 8abp_A 56 SGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMLAATKIGERQGQELYKEMQKRGWDVKES 135 (306)
T ss_dssp TTCCEEEEECSCGGGHHHHHHHHHHTTCEEEEESSCCBCTTSCBCTTSCEEEECHHHHHHHHHHHHHHHHHHHTCCGGGE
T ss_pred cCCCEEEEeCCCchhhHHHHHHHHHCCCcEEEeCCCCCCccccccccccEEecChhHHHHHHHHHHHHHHHhcCCCccce
Confidence 4677765 44544445555566777899999876433322111111333445566666777776653 43433 88
Q ss_pred EEEE-EcCC--CccchHHHHHHHHhccCc---EEEEeeecCCCCChHHHHHHHHHHhcC--CCeE-EEEEccCCcHHHHH
Q 003093 76 IAIY-VDDD--HGRNGIAALGDTLAAKRC---RISFKAPLSVEATEDEITDLLVKVALT--ESRI-IVVHTHYNRGPVVF 146 (848)
Q Consensus 76 aii~-~dd~--~g~~~~~~l~~~l~~~g~---~v~~~~~~~~~~~~~d~~~~l~~i~~~--~~~v-iv~~~~~~~~~~~~ 146 (848)
+++. .... ......+.|.+++++.|. +++.... ...+...-...+.++.+. +++. +|++++...+..++
T Consensus 136 ~~~~~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~a~~i~~~nD~~A~g~~ 213 (306)
T 8abp_A 136 AVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPT--KSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGV 213 (306)
T ss_dssp EEEEEECTTSHHHHHHHHHHHHHHHHHTCCGGGEEEEEC--SSSSHHHHHHHHHHHHTTCTTCSEEEEECSSHHHHHHHH
T ss_pred EEEEecCCCChHHHHHHHHHHHHHHhcCCCCcEEEeecc--CCCChHHHHHHHHHHHHhCCCCceEEEEeCCcHHHHHHH
Confidence 8886 3332 334556889999999874 3433221 222334445555665554 4556 34455566777899
Q ss_pred HHHHHcCCCCCCeEEEecCc
Q 003093 147 HVAQYLGMLGTGYVWIATSW 166 (848)
Q Consensus 147 ~~a~~~g~~~~~~~wi~~~~ 166 (848)
++++++|+...+...++.|.
T Consensus 214 ~al~~~g~~v~di~vvG~D~ 233 (306)
T 8abp_A 214 RATEGQGFKAADIIGIGING 233 (306)
T ss_dssp HHHHHTTCCGGGEEEEEESS
T ss_pred HHHHHcCCCCCceEEEEeCc
Confidence 99999998643334444443
No 137
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=95.36 E-value=0.054 Score=57.24 Aligned_cols=149 Identities=9% Similarity=-0.008 Sum_probs=87.8
Q ss_pred CCeEEEEccCCchhHHHHHHhhccCCccEEecccC-CCCCCCCCCCceEeccCChHHHHHHHHHHHHH-cC-cEEEEEEE
Q 003093 3 GQTVAIIGPQDAVTSHVVSHVANELQVPLLSFSAT-DPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDH-YG-WREVIAIY 79 (848)
Q Consensus 3 ~~V~aiIGp~~S~~~~ava~i~~~~~vP~Is~~at-~p~ls~~~~p~f~r~~p~d~~q~~ai~~~~~~-~~-w~~vaii~ 79 (848)
.+|++||-+..+.........+.+.++|+|.+... .|.......+.+..+..++...+..+++++.. .| -+++++|.
T Consensus 103 ~~vdgiIi~~~~~~~~~~~~~~~~~~ip~V~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~Gg~~~I~~i~ 182 (342)
T 1jx6_A 103 SKSDYLIFTLDTTRHRKFVEHVLDSTNTKLILQNITTPVREWDKHQPFLYVGFDHAEGSRELATEFGKFFPKHTYYSVLY 182 (342)
T ss_dssp TTCSEEEECCSSSTTHHHHHHHHHHCSCEEEEETCCSCBGGGTTSCCSEEEECCHHHHHHHHHHHHHHHSCTTCEEEEEC
T ss_pred cCCCEEEEeCChHhHHHHHHHHHHcCCCEEEEecCCCcccccccCCCceEEecCcHHHHHHHHHHHHHHcCCCceEEEEE
Confidence 46778776554432223333445668998876332 22111011233444667777778888888766 47 99999997
Q ss_pred EcCC-CccchHHHHHHHHhccCc-EEEEeeecCCCCChHHHHHHHHHHhc--CCCeEEEEEccCCcHHHHHHHHHHcCC
Q 003093 80 VDDD-HGRNGIAALGDTLAAKRC-RISFKAPLSVEATEDEITDLLVKVAL--TESRIIVVHTHYNRGPVVFHVAQYLGM 154 (848)
Q Consensus 80 ~dd~-~g~~~~~~l~~~l~~~g~-~v~~~~~~~~~~~~~d~~~~l~~i~~--~~~~viv~~~~~~~~~~~~~~a~~~g~ 154 (848)
.... ......+.|.+++++.|. .... .+....+..+-...+.++.+ ..+++|+. .+...+..++++++++|+
T Consensus 183 ~~~~~~~~~R~~Gf~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~nd~~A~g~~~al~~~g~ 258 (342)
T 1jx6_A 183 FSEGYISDVRGDTFIHQVNRDNNFELQS--AYYTKATKQSGYDAAKASLAKHPDVDFIYA-CSTDVALGAVDALAELGR 258 (342)
T ss_dssp CSTTHHHHHHHHHHHHHHHHHHCCEEEE--EECCCSSHHHHHHHHHHHHHHCCCCSEEEE-SSHHHHHHHHHHHHHHTC
T ss_pred cCCcchhhHHHHHHHHHHHhCCCcEEEE--EecCCCCHHHHHHHHHHHHHhCCCccEEEE-CCChhHHHHHHHHHHcCC
Confidence 5433 234456789999999886 3322 22222223333344444433 35777664 344567789999999998
No 138
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=95.36 E-value=0.041 Score=58.30 Aligned_cols=151 Identities=11% Similarity=0.063 Sum_probs=93.8
Q ss_pred CCeEEEE--ccCCchhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEeccCChHHHHHHHHHHHHHcCcEEEEEEEE
Q 003093 3 GQTVAII--GPQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYV 80 (848)
Q Consensus 3 ~~V~aiI--Gp~~S~~~~ava~i~~~~~vP~Is~~at~p~ls~~~~p~f~r~~p~d~~q~~ai~~~~~~~~w~~vaii~~ 80 (848)
.+|++|| +...+. .....+...++|+|......+ .+....+..++..-+..+++++...|-++++++..
T Consensus 123 ~~vdGiIi~~~~~~~---~~~~~l~~~~iPvV~i~~~~~------~~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~ 193 (344)
T 3kjx_A 123 WRPSGVIIAGLEHSE---AARAMLDAAGIPVVEIMDSDG------KPVDAMVGISHRRAGREMAQAILKAGYRRIGFMGT 193 (344)
T ss_dssp TCCSEEEEECSCCCH---HHHHHHHHCSSCEEEEEECSS------CCSSEEEEECHHHHHHHHHHHHHHHTCCSCCEEES
T ss_pred CCCCEEEEECCCCCH---HHHHHHHhCCCCEEEEeCCCC------CCCCCEEEECcHHHHHHHHHHHHHCCCCeEEEEec
Confidence 4566655 322222 344556678999998743211 12223455677777888888888889999999985
Q ss_pred cC---CCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhc--CCCeEEEEEccCCcHHHHHHHHHHcCCC
Q 003093 81 DD---DHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVAL--TESRIIVVHTHYNRGPVVFHVAQYLGML 155 (848)
Q Consensus 81 dd---~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~--~~~~viv~~~~~~~~~~~~~~a~~~g~~ 155 (848)
.. .....-.+.|.+++++.|+.+.....+....+..+-...+.++.+ .++++|+ +.+...+..++++++++|+.
T Consensus 194 ~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~-~~nd~~A~g~~~al~~~g~~ 272 (344)
T 3kjx_A 194 KMPLDYRARKRFEGFTEVLGKNGVEIEDREFYSGGSALAKGREMTQAMLERSPDLDFLY-YSNDMIAAGGLLYLLEQGID 272 (344)
T ss_dssp STTTCHHHHHHHHHHHHHHHHTTCCCSCEEECSSCCCHHHHHHHHHHHHHHSTTCCEEE-ESSHHHHHHHHHHHHHTTCC
T ss_pred CcccCccHHHHHHHHHHHHHHcCCCCChheEEeCCCCHHHHHHHHHHHHhcCCCCCEEE-ECCHHHHHHHHHHHHHcCCC
Confidence 53 234456788999999999875433333222232333334444432 3677776 44456677899999999997
Q ss_pred CCCeEEEe
Q 003093 156 GTGYVWIA 163 (848)
Q Consensus 156 ~~~~~wi~ 163 (848)
.++-+-|.
T Consensus 273 vP~disvv 280 (344)
T 3kjx_A 273 IPGQIGLA 280 (344)
T ss_dssp TTTTCEEE
T ss_pred CCCceEEE
Confidence 66544444
No 139
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=95.31 E-value=0.15 Score=52.50 Aligned_cols=142 Identities=12% Similarity=0.124 Sum_probs=88.8
Q ss_pred CCCeEEEEccCCchhHHHHHHhhccCCccEEecccCCCCCCC------CCCCceEeccCChHHHHHHHHHHHHHc--CcE
Q 003093 2 EGQTVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSS------LQFPYFVRTTQSDQYQMAAIAEIVDHY--GWR 73 (848)
Q Consensus 2 ~~~V~aiIGp~~S~~~~ava~i~~~~~vP~Is~~at~p~ls~------~~~p~f~r~~p~d~~q~~ai~~~~~~~--~w~ 73 (848)
+++|++||.... .....+.. ...++|+|..+.++|.... ...+.+..+. +..-+...++++... |-+
T Consensus 60 ~~~vDgII~~~~-~~~~~~~~--~~~~iPvV~~~~~~~~~~~~v~~~~~~~~~~~gv~--~~~~~~~~~~~l~~~~pg~~ 134 (295)
T 3lft_A 60 ANGNDLVVGIAT-PAAQGLAS--ATKDLPVIMAAITDPIGANLVKDLKKPGGNVTGVS--DHNPAQQQVELIKALTPNVK 134 (295)
T ss_dssp TSSCSEEEEESH-HHHHHHHH--HCSSSCEEEESCSCTTTTTSCSCSSCCCSSEEEEE--ECCCHHHHHHHHHHHCTTCC
T ss_pred hcCCCEEEECCc-HHHHHHHH--cCCCCCEEEEeccChhhcCccccccCCCCcEEEEE--CCccHHHHHHHHHHhCCCCc
Confidence 467888886543 23333332 2479999986655543211 0112333332 222356666777776 899
Q ss_pred EEEEEEEcCCC-ccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccCCcHHHHHHHHHHc
Q 003093 74 EVIAIYVDDDH-GRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYL 152 (848)
Q Consensus 74 ~vaii~~dd~~-g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~~~~~a~~~ 152 (848)
++++|+.+... +....+.+++++++.|+++....... ..+....+.++. .++++|++..+ ..+...++++.+.
T Consensus 135 ~I~~i~~~~~~~~~~r~~g~~~al~~~gi~~~~~~~~~----~~~~~~~~~~l~-~~~dai~~~~D-~~a~g~~~~l~~~ 208 (295)
T 3lft_A 135 TIGALYSSSEDNSKTQVEEFKAYAEKAGLTVETFAVPS----TNEIASTVTVMT-SKVDAIWVPID-NTIASGFPTVVSS 208 (295)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEESS----GGGHHHHHHHHT-TTCSEEEECSC-HHHHHTHHHHHHH
T ss_pred EEEEEeCCCCcchHHHHHHHHHHHHHcCCEEEEEecCC----HHHHHHHHHHHH-hcCCEEEECCc-hhHHHHHHHHHHH
Confidence 99999976543 45567899999999999886543322 246667777776 47898877543 3455567777777
Q ss_pred CC
Q 003093 153 GM 154 (848)
Q Consensus 153 g~ 154 (848)
|.
T Consensus 209 ~~ 210 (295)
T 3lft_A 209 NQ 210 (295)
T ss_dssp TT
T ss_pred HH
Confidence 75
No 140
>4ab5_A Transcriptional regulator, LYSR family; transcription factors; 2.51A {Neisseria meningitidis serogroup B} PDB: 4ab6_A
Probab=95.29 E-value=0.13 Score=49.77 Aligned_cols=83 Identities=18% Similarity=0.134 Sum_probs=55.1
Q ss_pred ceEEEEecCCCCccceEEeCCCcceeeeeHHHHHHHHHhCCCCcceEEeeCCCCCCCCChhHHHHHHhcCeeeEEeecee
Q 003093 376 RHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDIA 455 (848)
Q Consensus 376 ~~lrv~v~~~~~~~p~~~~~~~~~~~G~~~dll~~i~~~l~~~~~~~~~~~~~~~~n~s~~~~i~~l~~g~~D~~~~~~~ 455 (848)
.+||||+... . ...+-.+++..+.++.+ .+++.... ++...++.+|.+|++|+++....
T Consensus 8 g~l~Ig~~~~--~-----------~~~~l~~~l~~f~~~~P-~i~i~i~~-------~~~~~~~~~l~~g~~Di~i~~~~ 66 (222)
T 4ab5_A 8 GELRIAVECH--T-----------CFDWLMPAMGEFRPMWP-QVELDIVS-------GFQADPVGLLLQHRADLAIVSEA 66 (222)
T ss_dssp EEEEEECCCT--T-----------THHHHHHHHHHHHHHST-TEEEEEEC-------CCCSCTHHHHHTTSCSEEEESCC
T ss_pred ceEEEEEehH--H-----------HHHHHHHHHHHHHHHCC-CcEEEEec-------CCHHHHHHHHHcCCcCEEEecCC
Confidence 5788887631 1 12455677888888774 33455543 45678999999999999988443
Q ss_pred eecCceeeeeecccccccceEEEEeccC
Q 003093 456 IITNRTKMADFTQPYIESGLVVVAPVRK 483 (848)
Q Consensus 456 ~t~~R~~~~dfs~p~~~~~~~~v~~~~~ 483 (848)
.... .+ -..++....+++++++..
T Consensus 67 ~~~~---~~-~~~~l~~~~~~~v~~~~~ 90 (222)
T 4ab5_A 67 EKQN---GI-SFQPLFAYEMVGICAPDH 90 (222)
T ss_dssp CCCT---TE-EEEEEEEEEEEEEECTTS
T ss_pred CCcC---Ce-EEEEeecCcEEEEecCCC
Confidence 3222 22 246777888899988765
No 141
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=95.28 E-value=0.17 Score=51.28 Aligned_cols=154 Identities=8% Similarity=0.091 Sum_probs=89.2
Q ss_pred CCCeEEEE-ccCCchhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEeccCChHHHHHHHHHHHHHc--CcEEEEEE
Q 003093 2 EGQTVAII-GPQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHY--GWREVIAI 78 (848)
Q Consensus 2 ~~~V~aiI-Gp~~S~~~~ava~i~~~~~vP~Is~~at~p~ls~~~~p~f~r~~p~d~~q~~ai~~~~~~~--~w~~vaii 78 (848)
+.+|++|| -|..+.........+.+.++|+|......+ .. +....+..++..-+..+++++... |-++++++
T Consensus 55 ~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~i~~~~~---~~--~~~~~V~~D~~~~g~~a~~~L~~~g~g~~~I~~i 129 (271)
T 2dri_A 55 VRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQAT---KG--EVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIEL 129 (271)
T ss_dssp TTTEEEEEECCSSTTTTHHHHHHHHHTTCCEEEESSCCS---SS--CCSEEEEECHHHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred HcCCCEEEEeCCChHHHHHHHHHHHHCCCcEEEecCCCC---CC--ceeEEEecChHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 45788876 343333222233445567999998754322 11 112234456666677778876555 56899999
Q ss_pred EEcCCC--ccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhc--CCCeEEEEEccCCcHHHHHHHHHHcCC
Q 003093 79 YVDDDH--GRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVAL--TESRIIVVHTHYNRGPVVFHVAQYLGM 154 (848)
Q Consensus 79 ~~dd~~--g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~--~~~~viv~~~~~~~~~~~~~~a~~~g~ 154 (848)
...... ...-.+.|.+++++.|+.+.... ....+...-...+.++.+ ..+++|+. .+...+..++++++++|+
T Consensus 130 ~g~~~~~~~~~R~~Gf~~al~~~g~~~~~~~--~~~~~~~~~~~~~~~ll~~~~~~~ai~~-~nD~~A~g~~~al~~~g~ 206 (271)
T 2dri_A 130 QGIAGTSAARERGEGFQQAVAAHKFNVLASQ--PADFDRIKGLNVMQNLLTAHPDVQAVFA-QNDEMALGALRALQTAGK 206 (271)
T ss_dssp ECCTTCHHHHHHHHHHHHHHHHHTCEEEEEE--ECTTCHHHHHHHHHHHHHHCTTCCEEEE-SSHHHHHHHHHHHHHHTC
T ss_pred ECCCCCccHhHHHHHHHHHHhcCCCEEEEec--CCCCCHHHHHHHHHHHHHhCCCccEEEE-CCCcHHHHHHHHHHHcCC
Confidence 744322 34556789999999998765321 111222333333444432 34666554 444567789999999997
Q ss_pred CCCCeEEEecC
Q 003093 155 LGTGYVWIATS 165 (848)
Q Consensus 155 ~~~~~~wi~~~ 165 (848)
.+...++-|
T Consensus 207 --~dv~vvGfD 215 (271)
T 2dri_A 207 --SDVMVVGFD 215 (271)
T ss_dssp --CSCEEEEEE
T ss_pred --CCcEEEEec
Confidence 344444433
No 142
>3oxn_A Putative transcriptional regulator, LYSR family; structural genomics, PSI-2, protein structure initiative; 2.70A {Vibrio parahaemolyticus}
Probab=95.26 E-value=0.38 Score=47.38 Aligned_cols=84 Identities=11% Similarity=0.088 Sum_probs=56.7
Q ss_pred CceEEEEecCCCCccceEEeCCCcceeeeeHHHHHHHHHhCCCCcceEEeeCCCCCCCCChhHHHHHHhcCeeeEEeece
Q 003093 375 GRHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDI 454 (848)
Q Consensus 375 g~~lrv~v~~~~~~~p~~~~~~~~~~~G~~~dll~~i~~~l~~~~~~~~~~~~~~~~n~s~~~~i~~l~~g~~D~~~~~~ 454 (848)
...||||+... . ...+-..++..+.++.+ .+++.... ++...++++|.+|++|+++...
T Consensus 18 ~g~l~Ig~~~~--~-----------~~~~l~~~l~~f~~~~P-~i~l~~~~-------~~~~~~~~~l~~g~~Dl~i~~~ 76 (241)
T 3oxn_A 18 DQTFTIATTDY--A-----------MQTILPFALPRIYQEAP-NVSFNFLP-------LQHDRLSDQLTYEGADLAICRP 76 (241)
T ss_dssp CCEEEEEECSH--H-----------HHHTHHHHHHHHHHHCT-TCEEEEEE-------CCGGGHHHHHHTSCCSEEEECC
T ss_pred CceEEEEechH--H-----------HHHHHHHHHHHHHHHCC-CCEEEEEE-------CCcccHHHHHHcCCCCEEEecC
Confidence 46799998731 1 22456678888888764 23344443 4578999999999999998843
Q ss_pred eeecCceeeeeecccccccceEEEEeccC
Q 003093 455 AIITNRTKMADFTQPYIESGLVVVAPVRK 483 (848)
Q Consensus 455 ~~t~~R~~~~dfs~p~~~~~~~~v~~~~~ 483 (848)
.. ....+. ..++....+++++++..
T Consensus 77 ~~---~~~~~~-~~~l~~~~~~~v~~~~h 101 (241)
T 3oxn_A 77 TG---PVEPLR-SEILGRVGVLCLLSKQH 101 (241)
T ss_dssp SS---CCTTEE-EEEEECCCEEEEEETTS
T ss_pred CC---CCccce-eEEeecccEEEEEeCCC
Confidence 22 222222 46778889999998765
No 143
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=95.24 E-value=0.017 Score=52.19 Aligned_cols=74 Identities=20% Similarity=0.196 Sum_probs=57.6
Q ss_pred HHHHHHhhhhhcccCCCCCCCCCCCcchhhhhHHHHhhhcC--ccccccchhHHHHHHHHhhhhhhhccccceeeeeeee
Q 003093 508 LAVGAVVWILEHRLNDEFRGPPKRQVVTIFWFSFSTMFFAH--KEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTV 585 (848)
Q Consensus 508 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~ 585 (848)
++.+.+++.+++.. .+....++.+++||++.++...| .-.|.+..+|++.++|.++++.+.+...+.+.+.+..
T Consensus 20 ~~~a~~~~~~e~~~----~~~~~~~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~~~~ 95 (139)
T 3eff_K 20 LAGSYLAVLAERGA----PGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVG 95 (139)
T ss_dssp HHHHHHHHHTTSSC----TTCCCCCHHHHHHHHHHHHTTCCCSSSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTTTH
T ss_pred HHHHHHHHHHhcCC----CCcccCCHHHHHHHHheeeecccCCCCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666543 23344678999999999998665 5589999999999999999999999999998887744
No 144
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=95.20 E-value=0.015 Score=53.43 Aligned_cols=78 Identities=15% Similarity=0.157 Sum_probs=61.6
Q ss_pred HHHHHHHhhhhhcccCCCCCCCCCCCcchhhhhHHHHhhhcC--ccccccchhHHHHHHHHhhhhhhhccccceeeeeee
Q 003093 507 FLAVGAVVWILEHRLNDEFRGPPKRQVVTIFWFSFSTMFFAH--KEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILT 584 (848)
Q Consensus 507 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt 584 (848)
+++.+++++.+|+..+ ++...++.+++|+++.++...| .-.|.+..+|++.++|.++++.+.+..++.+++.++
T Consensus 63 i~~~a~~~~~~E~~~~----~~~~~s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~~~~~ 138 (155)
T 2a9h_A 63 LLAGSYLAVLAERGAP----GAALISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFV 138 (155)
T ss_dssp HHHHHHHHHHHHTTSS----CSSTTSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCC----CCccCcccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555777776532 3345579999999999998665 558999999999999999999999999999998887
Q ss_pred eccc
Q 003093 585 VQKL 588 (848)
Q Consensus 585 ~~~~ 588 (848)
....
T Consensus 139 ~~~~ 142 (155)
T 2a9h_A 139 GREQ 142 (155)
T ss_dssp SCCC
T ss_pred HHHH
Confidence 6543
No 145
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=95.19 E-value=0.13 Score=52.43 Aligned_cols=149 Identities=8% Similarity=0.021 Sum_probs=93.0
Q ss_pred CCeEEEEccCCchhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEeccCChHHHHHHHHHHHHHcCcEEEEEEEEcC
Q 003093 3 GQTVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDD 82 (848)
Q Consensus 3 ~~V~aiIGp~~S~~~~ava~i~~~~~vP~Is~~at~p~ls~~~~p~f~r~~p~d~~q~~ai~~~~~~~~w~~vaii~~dd 82 (848)
++|++||=..... ......+.+.++|+|......+ +... -.+..++...+..+++++...|-++++++....
T Consensus 62 ~~vdgiIi~~~~~--~~~~~~l~~~~iPvV~i~~~~~---~~~~---~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~ 133 (276)
T 3jy6_A 62 RGFDGLILQSFSN--PQTVQEILHQQMPVVSVDREMD---ACPW---PQVVTDNFEAAKAATTAFRQQGYQHVVVLTSEL 133 (276)
T ss_dssp TTCSEEEEESSCC--HHHHHHHHTTSSCEEEESCCCT---TCSS---CEEECCHHHHHHHHHHHHHTTTCCEEEEEEECS
T ss_pred CCCCEEEEecCCc--HHHHHHHHHCCCCEEEEecccC---CCCC---CEEEEChHHHHHHHHHHHHHcCCCeEEEEecCC
Confidence 4677766333333 4445566778999998755432 1122 235567777888889998888999999998665
Q ss_pred C-C--ccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhc-CCCeEEEEEccCCcHHHHHHHHHHcCCCCCC
Q 003093 83 D-H--GRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVAL-TESRIIVVHTHYNRGPVVFHVAQYLGMLGTG 158 (848)
Q Consensus 83 ~-~--g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~-~~~~viv~~~~~~~~~~~~~~a~~~g~~~~~ 158 (848)
. + .....+.|.+++++.+. +.... ........+....+.++. .++++|+. ++...+..++++++++|+..++
T Consensus 134 ~~~~~~~~R~~gf~~~l~~~~~-~~~~~--~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP~ 209 (276)
T 3jy6_A 134 ELSRTRQERYRGILAAAQDVDV-LEVSE--SSYNHSEVHQRLTQLITQNDQKTVAFA-LKERWLLEFFPNLIISGLIDNQ 209 (276)
T ss_dssp TTCHHHHHHHHHHHTTCSEEEE-EEECS--SSCCHHHHHHHHHHHHHSSSSCEEEEE-SSHHHHHHHSHHHHHSSSCCSS
T ss_pred CCCchHHHHHHHHHHHHHhCCc-EEEec--cccCCcHHHHHHHHHHhcCCCCcEEEE-eCcHHHHHHHHHHHHcCCCCCC
Confidence 4 3 24566788888888864 22111 100122334444445543 35676654 4556677899999999987655
Q ss_pred eEEEe
Q 003093 159 YVWIA 163 (848)
Q Consensus 159 ~~wi~ 163 (848)
-+-|.
T Consensus 210 di~vi 214 (276)
T 3jy6_A 210 TVTAT 214 (276)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 44443
No 146
>3ho7_A OXYR; beta-alpha-barrels, DNA-binding, transcription, transcriptio regulation; 1.58A {Porphyromonas gingivalis}
Probab=95.12 E-value=0.094 Score=51.34 Aligned_cols=83 Identities=12% Similarity=0.003 Sum_probs=56.8
Q ss_pred ceEEEEecCCCCccceEEeCCCcceeeeeHHHHHHHHHhCCCCcceEEeeCCCCCCCCChhHHHHHHhcCeeeEEeecee
Q 003093 376 RHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDIA 455 (848)
Q Consensus 376 ~~lrv~v~~~~~~~p~~~~~~~~~~~G~~~dll~~i~~~l~~~~~~~~~~~~~~~~n~s~~~~i~~l~~g~~D~~~~~~~ 455 (848)
.+||||+... . ...+..+++..+.+..+ .+++.... ++...++.+|.+|++|+++....
T Consensus 11 g~l~Ig~~~~--~-----------~~~~l~~~l~~~~~~~P-~v~i~~~~-------~~~~~~~~~l~~g~~Dl~i~~~~ 69 (232)
T 3ho7_A 11 GRLNIAVLPT--I-----------APYLLPRVFPIWKKELA-GLEIHVSE-------MQTSRCLASLLSGEIDMAIIASK 69 (232)
T ss_dssp EEEEEEECTT--T-----------HHHHHHHHHHHHHHHST-TEEEEEEE-------CCHHHHHHHHHHTSCSEEEESSC
T ss_pred eeEEEEeccc--c-----------chhhhHHHHHHHHHHCC-CcEEEEEe-------CCHHHHHHHHHcCCCCEEEEcCC
Confidence 5788888731 1 12356677888888775 34455543 45889999999999999998544
Q ss_pred eecCceeeeeecccccccceEEEEeccC
Q 003093 456 IITNRTKMADFTQPYIESGLVVVAPVRK 483 (848)
Q Consensus 456 ~t~~R~~~~dfs~p~~~~~~~~v~~~~~ 483 (848)
.... .+ -..+.....+++++++..
T Consensus 70 ~~~~---~l-~~~~l~~~~~~~v~~~~h 93 (232)
T 3ho7_A 70 AETE---GL-EDDLLYYEEFLGYVSRCE 93 (232)
T ss_dssp CCCT---TE-EEEEEEEEEEEEEECTTS
T ss_pred CCCC---Ce-EEEEecccCEEEEEcCCC
Confidence 3322 22 246778888999998765
No 147
>2g29_A Nitrate transport protein NRTA; solute-binding protein, alpha-beta protein; 1.50A {Synechocystis SP}
Probab=95.04 E-value=0.036 Score=60.54 Aligned_cols=103 Identities=9% Similarity=0.168 Sum_probs=61.7
Q ss_pred HHhhcCCCCeeEE-eCchHHHHHH---hhhCCC---ccCcccCCCHHHHHHHhhcCCCCCceEEEEccHHHHHHHHhcCC
Q 003093 596 DSLRSSNYPIGYQ-VNSFARNYLV---DELNID---ESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRC 668 (848)
Q Consensus 596 ~dL~~s~~~i~~~-~~s~~~~~l~---~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~ 668 (848)
+||. |++||+. .++....++. ...+.. ..+++.+ ...+...+|.. |++||++...++......+..
T Consensus 151 ~dLk--Gk~iav~~~gs~~~~~l~~~L~~~Gl~~~~dv~~v~~-~~~~~~~aL~~----G~vDa~~~~eP~~~~~~~~g~ 223 (417)
T 2g29_A 151 AKVT--DPKVAMTFPGGTHDMWIRYWLAAGGMEPGKDFSTIVV-PPAQMVANVKV----NAMESFCVGEPWPLQTVNQGV 223 (417)
T ss_dssp HTSS--SCEEEESSTTSHHHHHHHHHHHHTTCCBTTTBEEEEC-CGGGHHHHHHT----TSCSEEEEETTHHHHHHHHTS
T ss_pred HhcC--CCEEEEeCCCCHHHHHHHHHHHHcCCCCCCceEEEEC-CHHHHHHHHHc----CCCCEEEeCCCHHHHHHHcCC
Confidence 6776 8899998 4665443332 223443 2345556 45788999999 899999988887766655543
Q ss_pred c-EEE-eCCccccCC-ceeeecCC----CC-----chHHHHHHHHhhhc
Q 003093 669 E-FSI-VGQVFTKNG-WGFAFPRD----SP-----LAVDISTAILKLSE 705 (848)
Q Consensus 669 ~-l~~-~~~~~~~~~-~~~~~~k~----sp-----l~~~in~~i~~l~e 705 (848)
. ... ..+.....+ ..++++++ .| +...+.++..++.+
T Consensus 224 ~~~~~~~~~~~~~~p~~~l~~~~~~~~~~p~~~~~~~~A~~~A~~~~~~ 272 (417)
T 2g29_A 224 GYQALTTGQLWKDHPEKAFGMRADWVDQNPKAAKALLMAVMEAQQWCDQ 272 (417)
T ss_dssp CEEEEEGGGTBTTCBCEEEEEEHHHHHHCHHHHHHHHHHHHHHHHHHHC
T ss_pred CEEEEechhhcCCCceEEEEECHHHHHHCHHHHHHHHHHHHHHHHHHhC
Confidence 2 222 223222222 46677654 34 44556666666765
No 148
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=95.00 E-value=0.18 Score=53.45 Aligned_cols=153 Identities=10% Similarity=0.083 Sum_probs=93.2
Q ss_pred CCeEEEEccCCchhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEeccCChHHHHHHHHHHHHHcCcEEEEEEEEcC
Q 003093 3 GQTVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDD 82 (848)
Q Consensus 3 ~~V~aiIGp~~S~~~~ava~i~~~~~vP~Is~~at~p~ls~~~~p~f~r~~p~d~~q~~ai~~~~~~~~w~~vaii~~dd 82 (848)
.+|++||=...... ......+...++|+|...... ..+....+..++..-+..+++++...|-+++++|..+.
T Consensus 125 ~~vdGiI~~~~~~~-~~~~~~l~~~~iPvV~i~~~~------~~~~~~~V~~D~~~~~~~a~~~L~~~G~r~I~~i~~~~ 197 (355)
T 3e3m_A 125 RRPEAMVLSYDGHT-EQTIRLLQRASIPIVEIWEKP------AHPIGHTVGFSNERAAYDMTNALLARGFRKIVFLGEKD 197 (355)
T ss_dssp TCCSEEEEECSCCC-HHHHHHHHHCCSCEEEESSCC------SSCSSEEEECCHHHHHHHHHHHHHHTTCCSEEEEEESS
T ss_pred CCCCEEEEeCCCCC-HHHHHHHHhCCCCEEEECCcc------CCCCCCEEEeChHHHHHHHHHHHHHCCCCeEEEEccCc
Confidence 35666552221111 233455667899999864221 11223355667777788888888888999999998654
Q ss_pred CC---ccchHHHHHHHHhccCcEEEEeeec-CCCCChHHHHHHHHHHhc--CCCeEEEEEccCCcHHHHHHHHHHcCCCC
Q 003093 83 DH---GRNGIAALGDTLAAKRCRISFKAPL-SVEATEDEITDLLVKVAL--TESRIIVVHTHYNRGPVVFHVAQYLGMLG 156 (848)
Q Consensus 83 ~~---g~~~~~~l~~~l~~~g~~v~~~~~~-~~~~~~~d~~~~l~~i~~--~~~~viv~~~~~~~~~~~~~~a~~~g~~~ 156 (848)
.. ...-.+.|.+++++.|+.+.....+ ....+..+-...+.++.. ..+++|+. .+...+..++++++++|+..
T Consensus 198 ~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~-~nD~~A~g~~~al~~~G~~v 276 (355)
T 3e3m_A 198 DDWTRGAARRAGFKRAMREAGLNPDQEIRLGAPPLSIEDGVAAAELILQEYPDTDCIFC-VSDMPAFGLLSRLKSIGVAV 276 (355)
T ss_dssp CTTSHHHHHHHHHHHHHHHTTSCSCCEEEESCSSCCHHHHHHHHHHHHHHCTTCCEEEE-SSHHHHHHHHHHHHHHTCCT
T ss_pred ccChhHHHHHHHHHHHHHHCCcCCCccEEEecCCCCHHHHHHHHHHHHcCCCCCcEEEE-CChHHHHHHHHHHHHcCCCC
Confidence 32 3566789999999999864311112 111222333334444433 36777664 44556778999999999876
Q ss_pred CCeEEEe
Q 003093 157 TGYVWIA 163 (848)
Q Consensus 157 ~~~~wi~ 163 (848)
++-+-|.
T Consensus 277 P~disvi 283 (355)
T 3e3m_A 277 PEQVSVV 283 (355)
T ss_dssp TTTCEEE
T ss_pred CCceEEE
Confidence 5544443
No 149
>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A*
Probab=94.99 E-value=0.25 Score=48.98 Aligned_cols=92 Identities=17% Similarity=0.077 Sum_probs=66.0
Q ss_pred HHHHHHHHHHcCcEEEEEEEEcCCCccchHHHHHHHHhccCcEEEEeeecCCC-------CChHHHHHHHHH-H-hcCCC
Q 003093 60 MAAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVE-------ATEDEITDLLVK-V-ALTES 130 (848)
Q Consensus 60 ~~ai~~~~~~~~w~~vaii~~dd~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~-------~~~~d~~~~l~~-i-~~~~~ 130 (848)
+.++++.++..|-++|+++.. |.....+.+.+.+++.|++|+........ .+...+...+.+ + ...++
T Consensus 105 ~~A~~~al~~~g~~rvglltp---y~~~~~~~~~~~l~~~Giev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a 181 (240)
T 3ixl_A 105 STAVLNGLRALGVRRVALATA---YIDDVNERLAAFLAEESLVPTGCRSLGITGVEAMARVDTATLVDLCVRAFEAAPDS 181 (240)
T ss_dssp HHHHHHHHHHTTCSEEEEEES---SCHHHHHHHHHHHHHTTCEEEEEEECCCCCHHHHHTCCHHHHHHHHHHHHHTSTTC
T ss_pred HHHHHHHHHHhCCCEEEEEeC---ChHHHHHHHHHHHHHCCCEEeccccCCCCCcchhhcCCHHHHHHHHHHHhhcCCCC
Confidence 567778888899999999974 88888889999999999998765543321 134667778888 7 77789
Q ss_pred eEEEEEccCCcHHHHHHHHH-HcCC
Q 003093 131 RIIVVHTHYNRGPVVFHVAQ-YLGM 154 (848)
Q Consensus 131 ~viv~~~~~~~~~~~~~~a~-~~g~ 154 (848)
|.||+.|..-....++.+.. ++|.
T Consensus 182 daivL~CT~l~~l~~i~~le~~lg~ 206 (240)
T 3ixl_A 182 DGILLSSGGLLTLDAIPEVERRLGV 206 (240)
T ss_dssp SEEEEECTTSCCTTHHHHHHHHHSS
T ss_pred CEEEEeCCCCchhhhHHHHHHHhCC
Confidence 99999876543333444332 3454
No 150
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=94.83 E-value=0.18 Score=54.87 Aligned_cols=156 Identities=9% Similarity=0.066 Sum_probs=96.3
Q ss_pred CCCeEEEEccCCchhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEeccCChHHHHHHHHHHHHHcCcEEEEEEEEc
Q 003093 2 EGQTVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVD 81 (848)
Q Consensus 2 ~~~V~aiIGp~~S~~~~ava~i~~~~~vP~Is~~at~p~ls~~~~p~f~r~~p~d~~q~~ai~~~~~~~~w~~vaii~~d 81 (848)
+.+|++||-.. ....+...+.+.++|+|......+... ..+.+-.+..++..-+..+++++...|-++++++...
T Consensus 74 ~~~vDGiIi~~---~~~~~~~~l~~~~iPvV~i~~~~~~~~--~~~~~~~V~~D~~~~g~~a~~~L~~~G~r~I~~i~~~ 148 (412)
T 4fe7_A 74 DWLGDGVIADF---DDKQIEQALADVDVPIVGVGGSYHLAE--SYPPVHYIATDNYALVESAFLHLKEKGVNRFAFYGLP 148 (412)
T ss_dssp -CCCSEEEEET---TCHHHHHHHTTCCSCEEEEEECCSSGG--GSCSSEEEEECHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred cCCCCEEEEec---CChHHHHHHhhCCCCEEEecCCccccc--cCCCCCEEEeCHHHHHHHHHHHHHHcCCceEEEeccc
Confidence 34677777522 223345566778999998765433211 1233445667777788888899888899999999855
Q ss_pred CCC----ccchHHHHHHHHhccCcEEEEeeecCC-CCChHHHHHHHHHHh-c-CCCeEEEEEccCCcHHHHHHHHHHcCC
Q 003093 82 DDH----GRNGIAALGDTLAAKRCRISFKAPLSV-EATEDEITDLLVKVA-L-TESRIIVVHTHYNRGPVVFHVAQYLGM 154 (848)
Q Consensus 82 d~~----g~~~~~~l~~~l~~~g~~v~~~~~~~~-~~~~~d~~~~l~~i~-~-~~~~viv~~~~~~~~~~~~~~a~~~g~ 154 (848)
... ...-.+.|.+++++.|+.......... ..+..+....+.++. . ..+++|+. ++...+..+++++++.|+
T Consensus 149 ~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~aI~~-~nD~~A~g~~~al~~~G~ 227 (412)
T 4fe7_A 149 ESSGKRWATEREYAFRQLVAEEKYRGVVYQGLETAPENWQHAQNRLADWLQTLPPQTGIIA-VTDARARHILQVCEHLHI 227 (412)
T ss_dssp TTSCCHHHHHHHHHHHHHHTTSSSCCEEECCSCSSCSSHHHHHHHHHHHHHHSCTTEEEEE-SSHHHHHHHHHHHHHHTC
T ss_pred ccccccHHHHHHHHHHHHHHHcCCCccccccccccccchhhHHHHHHHHHHhCCCCeEEEE-EecHHHHHHHHHHHHcCC
Confidence 443 456678999999999976432222111 112223333343332 2 35777664 445567789999999999
Q ss_pred CCCCeEEEe
Q 003093 155 LGTGYVWIA 163 (848)
Q Consensus 155 ~~~~~~wi~ 163 (848)
..++-+-++
T Consensus 228 ~vP~disvi 236 (412)
T 4fe7_A 228 PVPEKLCVI 236 (412)
T ss_dssp CTTTTSEEE
T ss_pred CCCceEEEE
Confidence 765544333
No 151
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=94.70 E-value=0.14 Score=51.33 Aligned_cols=146 Identities=10% Similarity=0.003 Sum_probs=89.8
Q ss_pred CCeEEEEccCCchhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEeccCChHHHHHHHHHHHHHcCcEEEEEEEEc-
Q 003093 3 GQTVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVD- 81 (848)
Q Consensus 3 ~~V~aiIGp~~S~~~~ava~i~~~~~vP~Is~~at~p~ls~~~~p~f~r~~p~d~~q~~ai~~~~~~~~w~~vaii~~d- 81 (848)
++|++||-........ ....+.++|+|...... +.+-.+..++...+..+++++...|.++++++...
T Consensus 57 ~~vdgiI~~~~~~~~~---~~l~~~~~pvV~~~~~~--------~~~~~V~~d~~~~~~~a~~~L~~~G~~~I~~i~~~~ 125 (255)
T 1byk_A 57 RNIDGVVLFGFTGITE---EMLAHWQSSLVLLARDA--------KGFASVCYDDEGAIKILMQRLYDQGHRNISYLGVPH 125 (255)
T ss_dssp TTCCEEEEECCTTCCT---TTSGGGSSSEEEESSCC--------SSCEEEEECHHHHHHHHHHHHHHTTCCCEEEECCCT
T ss_pred cCCCEEEEecCccccH---HHHHhcCCCEEEEcccc--------CCCCEEEEccHHHHHHHHHHHHHcCCCeEEEEecCC
Confidence 4677766322211111 23445689998765421 12334556677778888888877899999999843
Q ss_pred -C-CCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccCCcHHHHHHHHHHcCCCCCCe
Q 003093 82 -D-DHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGY 159 (848)
Q Consensus 82 -d-~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~ 159 (848)
+ .......+.|.+++++.|+.+.. +....+..+-...+.++...++++|+. .+...+..+++++++.|+ .+.
T Consensus 126 ~~~~~~~~R~~gf~~al~~~g~~~~~---~~~~~~~~~~~~~~~~~l~~~~~ai~~-~~d~~A~g~~~al~~~g~--~di 199 (255)
T 1byk_A 126 SDVTTGKRRHEAYLAFCKAHKLHPVA---ALPGLAMKQGYENVAKVITPETTALLC-ATDTLALGASKYLQEQRI--DTL 199 (255)
T ss_dssp TSTTTTHHHHHHHHHHHHHTTCCCEE---ECCCSCHHHHHHHSGGGCCTTCCEEEE-SSHHHHHHHHHHHHHTTC--CSC
T ss_pred CCcccHHHHHHHHHHHHHHcCCCcce---eecCCccchHHHHHHHHhcCCCCEEEE-eChHHHHHHHHHHHHcCC--CcE
Confidence 2 34456778999999999976432 222222333334445554456787665 444567789999999998 444
Q ss_pred EEEecC
Q 003093 160 VWIATS 165 (848)
Q Consensus 160 ~wi~~~ 165 (848)
..++-|
T Consensus 200 ~vig~d 205 (255)
T 1byk_A 200 QLASVG 205 (255)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 444443
No 152
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=94.68 E-value=0.22 Score=51.60 Aligned_cols=146 Identities=6% Similarity=-0.065 Sum_probs=90.5
Q ss_pred CCeEEEE-ccCCchhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEeccCChHHHHHHHHHHHH-HcCcEEEEEEEE
Q 003093 3 GQTVAII-GPQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVD-HYGWREVIAIYV 80 (848)
Q Consensus 3 ~~V~aiI-Gp~~S~~~~ava~i~~~~~vP~Is~~at~p~ls~~~~p~f~r~~p~d~~q~~ai~~~~~-~~~w~~vaii~~ 80 (848)
++|++|| .|............+.+.++|+|......+. ... ...+..++...+..+++++. ..|-++++++..
T Consensus 57 ~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~---~~~--~~~V~~D~~~~g~~a~~~L~~~~G~~~i~~i~g 131 (313)
T 3m9w_A 57 RGVDVLVIIPYNGQVLSNVVKEAKQEGIKVLAYDRMIND---ADI--DFYISFDNEKVGELQAKALVDIVPQGNYFLMGG 131 (313)
T ss_dssp TTCSEEEEECSSTTSCHHHHHHHHTTTCEEEEESSCCTT---SCC--SEEEEECHHHHHHHHHHHHHHHCSSEEEEEEES
T ss_pred cCCCEEEEeCCChhhhHHHHHHHHHCCCeEEEECCcCCC---CCc--eEEEecCHHHHHHHHHHHHHHhCCCCcEEEEEC
Confidence 4566665 3444433344556667889999987654322 111 13345677777888888876 899999999974
Q ss_pred cCC--CccchHHHHHHHHhcc----CcEEEEeeecCCCCChHHHHHHHHHHhc---CCCeEEEEEccCCcHHHHHHHHHH
Q 003093 81 DDD--HGRNGIAALGDTLAAK----RCRISFKAPLSVEATEDEITDLLVKVAL---TESRIIVVHTHYNRGPVVFHVAQY 151 (848)
Q Consensus 81 dd~--~g~~~~~~l~~~l~~~----g~~v~~~~~~~~~~~~~d~~~~l~~i~~---~~~~viv~~~~~~~~~~~~~~a~~ 151 (848)
... ......+.|.+++++. ++.+..... ....+..+....+.++.+ .++++|+.. +...+..+++++++
T Consensus 132 ~~~~~~~~~R~~Gf~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~ai~~~-~d~~a~g~~~al~~ 209 (313)
T 3m9w_A 132 SPVDNNAKLFRAGQMKVLKPYVDSGKIKVVGDQW-VDGWLPENALKIMENALTANNNKIDAVVAS-NDATAGGAIQALSA 209 (313)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEEE-CGGGCHHHHHHHHHHHHHHTTTCCCEEEES-SHHHHHHHHHHHHT
T ss_pred CCCCccHHHHHHHHHHHHHhhccCCCEEEEeecc-CCCcCHHHHHHHHHHHHHhCCCCeeEEEEC-CCchHHHHHHHHHH
Confidence 433 2344568888999887 576654332 212223333444444433 356766554 44567789999999
Q ss_pred cCCC
Q 003093 152 LGML 155 (848)
Q Consensus 152 ~g~~ 155 (848)
+|+.
T Consensus 210 ~G~~ 213 (313)
T 3m9w_A 210 QGLS 213 (313)
T ss_dssp TTCT
T ss_pred cCCC
Confidence 9985
No 153
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=94.67 E-value=0.092 Score=54.38 Aligned_cols=141 Identities=11% Similarity=0.116 Sum_probs=84.5
Q ss_pred CCCeEEEEccCCchhHHHHHHhhccCCccEEecccCCCCCCC------CCCCceEeccCChHHHHHHHHHHHHHc--CcE
Q 003093 2 EGQTVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSS------LQFPYFVRTTQSDQYQMAAIAEIVDHY--GWR 73 (848)
Q Consensus 2 ~~~V~aiIGp~~S~~~~ava~i~~~~~vP~Is~~at~p~ls~------~~~p~f~r~~p~d~~q~~ai~~~~~~~--~w~ 73 (848)
+++|++||.... .....+.. ...++|+|..+.+.|.... ...+.+..+. +...+...++++... |.+
T Consensus 67 ~~~vDgII~~~~-~~~~~~~~--~~~~iPvV~~~~~~~~~~~~v~~~~~~~~~~~gv~--~~~~~~~~~~~l~~~~Pg~~ 141 (302)
T 2qh8_A 67 GENPDVLVGIAT-PTAQALVS--ATKTIPIVFTAVTDPVGAKLVKQLEQPGKNVTGLS--DLSPVEQHVELIKEILPNVK 141 (302)
T ss_dssp HTCCSEEEEESH-HHHHHHHH--HCSSSCEEEEEESCTTTTTSCSCSSSCCSSEEEEE--CCCCHHHHHHHHHHHSTTCC
T ss_pred hCCCCEEEECCh-HHHHHHHh--cCCCcCEEEEecCCHhhcCccccccCCCCCEEEEE--CCcCHHHHHHHHHHhCCCCc
Confidence 356888886543 22333333 2679999987655543210 1123444333 122245566777666 999
Q ss_pred EEEEEEEcCC-CccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccCCcHHHHHHHHHHc
Q 003093 74 EVIAIYVDDD-HGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYL 152 (848)
Q Consensus 74 ~vaii~~dd~-~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~~~~~a~~~ 152 (848)
++++|+...+ .+....+.+++++++.|+++...... +..+....++++.. ++++|++..+ ..+...++++.+.
T Consensus 142 ~I~~i~~~~~~~~~~r~~g~~~al~~~gi~~~~~~~~----~~~~~~~~~~~l~~-~~dai~~~~D-~~a~g~~~~l~~~ 215 (302)
T 2qh8_A 142 SIGVVYNPGEANAVSLMELLKLSAAKHGIKLVEATAL----KSADVQSATQAIAE-KSDVIYALID-NTVASAIEGMIVA 215 (302)
T ss_dssp EEEEEECTTCHHHHHHHHHHHHHHHHTTCEEEEEECS----SGGGHHHHHHHHGG-GCSEEEECSC-HHHHTTHHHHHHH
T ss_pred EEEEEecCCCcchHHHHHHHHHHHHHcCCEEEEEecC----ChHHHHHHHHHHhc-cCCEEEECCc-HhHHHHHHHHHHH
Confidence 9999996543 35666789999999999988654332 22566777788763 7888877543 2233334444444
Q ss_pred C
Q 003093 153 G 153 (848)
Q Consensus 153 g 153 (848)
|
T Consensus 216 ~ 216 (302)
T 2qh8_A 216 A 216 (302)
T ss_dssp H
T ss_pred H
Confidence 4
No 154
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=94.66 E-value=0.13 Score=54.62 Aligned_cols=150 Identities=13% Similarity=0.032 Sum_probs=87.6
Q ss_pred CCeEEEEccCCchhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEeccCChHHHHHHHHHHHHHcCcEEEEEEEEcC
Q 003093 3 GQTVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDD 82 (848)
Q Consensus 3 ~~V~aiIGp~~S~~~~ava~i~~~~~vP~Is~~at~p~ls~~~~p~f~r~~p~d~~q~~ai~~~~~~~~w~~vaii~~dd 82 (848)
.+|++||-....... .....+...++|+|......+. ....+ .+..++..-+..+++++...|.+++++|..+.
T Consensus 121 ~~vdgiI~~~~~~~~-~~~~~l~~~~iPvV~i~~~~~~--~~~~~---~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~ 194 (348)
T 3bil_A 121 HGVDGIICVPNEECA-NQLEDLQKQGMPVVLVDRELPG--DSTIP---TATSNPQPGIAAAVELLAHNNALPIGYLSGPM 194 (348)
T ss_dssp TTCSCEEECCCGGGH-HHHHHHHHC-CCEEEESSCCSC--C-CCC---EEEEECHHHHHHHHHHHHHTTCCSEEEECCCT
T ss_pred CCCCEEEEeCCCCCh-HHHHHHHhCCCCEEEEcccCCC--CCCCC---EEEeChHHHHHHHHHHHHHCCCCeEEEEeCCC
Confidence 467777643332222 2334455679999987553321 01222 34455666678888888778999999997543
Q ss_pred C--CccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCC-CeEEEEEccCCcHHHHHHHHHHcCCCCCCe
Q 003093 83 D--HGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTE-SRIIVVHTHYNRGPVVFHVAQYLGMLGTGY 159 (848)
Q Consensus 83 ~--~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~-~~viv~~~~~~~~~~~~~~a~~~g~~~~~~ 159 (848)
. ......+.|.+++++.|+..... +....+..+-...+.++.+.. + +| ++.+...+..+++++++.|+..++-
T Consensus 195 ~~~~~~~R~~Gf~~al~~~g~~~~~v--~~~~~~~~~~~~~~~~ll~~~~~-ai-~~~nD~~A~g~~~al~~~G~~vP~d 270 (348)
T 3bil_A 195 DTSTGRERLEDFKAACANSKIGEQLV--FLGGYEQSVGFEGATKLLDQGAK-TL-FAGDSMMTIGVIEACHKAGLVIGKD 270 (348)
T ss_dssp TSHHHHHHHHHHHHHHHHTTCCCCEE--ECCCSSHHHHHHHHHHHHHTTCS-EE-EESSHHHHHHHHHHHHHTTCCBTTT
T ss_pred CCccHHHHHHHHHHHHHHcCcCccEE--EcCCCCHHHHHHHHHHHHcCCCC-EE-EEcChHHHHHHHHHHHHcCCCCCCC
Confidence 2 34456788999999998732111 111122233334455554433 5 43 3455566778999999999875543
Q ss_pred EEE
Q 003093 160 VWI 162 (848)
Q Consensus 160 ~wi 162 (848)
+-|
T Consensus 271 isv 273 (348)
T 3bil_A 271 VSV 273 (348)
T ss_dssp BEE
T ss_pred eEE
Confidence 333
No 155
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=94.50 E-value=0.34 Score=50.51 Aligned_cols=153 Identities=12% Similarity=-0.020 Sum_probs=86.1
Q ss_pred CCeEEEEccCCchhHHHHHHhhccC-CccEEecccCCCCCCCCCCCceEeccCChHHHHHHH----HHHHHHcCc-EEEE
Q 003093 3 GQTVAIIGPQDAVTSHVVSHVANEL-QVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAI----AEIVDHYGW-REVI 76 (848)
Q Consensus 3 ~~V~aiIGp~~S~~~~ava~i~~~~-~vP~Is~~at~p~ls~~~~p~f~r~~p~d~~q~~ai----~~~~~~~~w-~~va 76 (848)
+++++||..... ...++..++.++ ++|++......+ . .+.+-.... |..++..+ +.++...|- ++|+
T Consensus 61 ~~~dgIi~~~~~-~~~~~~~~a~~~p~~p~v~id~~~~---~--~~~~~~v~~-d~~~~~~lag~~a~~l~~~Gh~r~Ig 133 (318)
T 2fqx_A 61 ENMGLVVACGSF-LVEAVIETSARFPKQKFLVIDAVVQ---D--RDNVVSAVF-GQNEGSFLVGVAAALKAKEAGKSAVG 133 (318)
T ss_dssp TTCSEEEEESTT-THHHHHHHHHHCTTSCEEEESSCCC---S--CTTEEEEEE-CHHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred cCCCEEEECChh-HHHHHHHHHHHCCCCEEEEEcCccC---C--CCCEEEEEe-chHHHHHHHHHHHHHHhccCCCcEEE
Confidence 467777764322 223355555554 899887654321 0 122222222 34444444 456666676 8999
Q ss_pred EEEEc-CCCccchHHHHHHHHhccCcEEEEeeecCCCC-ChHHHHHHHHHHhcCCCeEEEEEccCCcHHHHHHHHHHcCC
Q 003093 77 AIYVD-DDHGRNGIAALGDTLAAKRCRISFKAPLSVEA-TEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGM 154 (848)
Q Consensus 77 ii~~d-d~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~-~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~~~~~a~~~g~ 154 (848)
+|... ..........|.+.+++.|..+.....+.... +...-.....++.+.++|+|+... ...+..++++++++|+
T Consensus 134 ~i~g~~~~~~~~r~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~a~~ll~~~~daI~~~~-d~~a~Gv~~a~~e~g~ 212 (318)
T 2fqx_A 134 FIVGMELGMMPLFEAGFEAGVKAVDPDIQVVVEVANTFSDPQKGQALAAKLYDSGVNVIFQVA-GGTGNGVIKEARDRRL 212 (318)
T ss_dssp EEESCCSTTTHHHHHHHHHHHHHHCTTCEEEEEECSCSSCHHHHHHHHHHHHHTTCCEEEEEC-GGGHHHHHHHHHHHHH
T ss_pred EEeCcccHHHHHHHHHHHHHHHHHCCCCEEEEEEccCccCHHHHHHHHHHHHHCCCcEEEECC-CCCchHHHHHHHhhhh
Confidence 99743 23345567889999998886443222222211 222233344555556799877554 4456778999999888
Q ss_pred CCCCeEEEec
Q 003093 155 LGTGYVWIAT 164 (848)
Q Consensus 155 ~~~~~~wi~~ 164 (848)
. ++-+++.+
T Consensus 213 ~-P~dv~viG 221 (318)
T 2fqx_A 213 N-GQDVWVIG 221 (318)
T ss_dssp T-TCCCEEEE
T ss_pred c-cCCcEEEE
Confidence 7 54455543
No 156
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=94.41 E-value=0.084 Score=53.74 Aligned_cols=146 Identities=10% Similarity=0.059 Sum_probs=84.0
Q ss_pred CCeEEEEccCCchhHHHHHH-hhccCCccEEecccCCCCCCCCCCCceEeccCChHHHHHHHHHHHHHcCcEEEEEEEEc
Q 003093 3 GQTVAIIGPQDAVTSHVVSH-VANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVD 81 (848)
Q Consensus 3 ~~V~aiIGp~~S~~~~ava~-i~~~~~vP~Is~~at~p~ls~~~~p~f~r~~p~d~~q~~ai~~~~~~~~w~~vaii~~d 81 (848)
.+|++||-...+ ... .. .+.+.++|+|......+.. . .+..++...+..+++++...|-++++++..+
T Consensus 63 ~~~dgiIi~~~~--~~~-~~~~l~~~~iPvV~~~~~~~~~-----~---~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~ 131 (277)
T 3e61_A 63 HNCTGMISTAFN--ENI-IENTLTDHHIPFVFIDRINNEH-----N---GISTNHFKGGQLQAEVVRKGKGKNVLIVHEN 131 (277)
T ss_dssp TTCSEEEECGGG--HHH-HHHHHHHC-CCEEEGGGCC-----------------HHHHHHHHHHHHHHTTCCSEEEEESC
T ss_pred CCCCEEEEecCC--hHH-HHHHHHcCCCCEEEEeccCCCC-----C---eEEechHHHHHHHHHHHHHCCCCeEEEEeCC
Confidence 456676642222 222 34 5667799999876543221 1 4566777778888888888899999999854
Q ss_pred CC--CccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccCCcHHHHHHHHHHcCCCCCCe
Q 003093 82 DD--HGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGY 159 (848)
Q Consensus 82 d~--~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~ 159 (848)
.. ......+.|.+++++.|+.+.. ...........+.. +.+ ..++++|+.. +...+..++++++++|+..++-
T Consensus 132 ~~~~~~~~R~~gf~~~l~~~~~~~~~-~~~~~~~~~~~~~~-l~~--~~~~~ai~~~-~d~~a~g~~~al~~~g~~vP~d 206 (277)
T 3e61_A 132 LLIDAFHQRVQGIKYILDQQRIDYKM-LEATLLDNDKKFID-LIK--ELSIDSIICS-NDLLAINVLGIVQRYHFKVPAE 206 (277)
T ss_dssp TTSHHHHHHHHHHHHHHHC---CEEE-EEGGGGGSHHHHHH-HHH--HHTCCEEEES-SHHHHHHHHHHHHHTTCCTTTT
T ss_pred CCCccHHHHHHHHHHHHHHcCCCccc-eecCCCCHHHHHHH-hhc--CCCCCEEEEC-CcHHHHHHHHHHHHcCCCCCCc
Confidence 33 3445678899999999987654 11111111122222 222 2467777654 4456777999999999976554
Q ss_pred EEEec
Q 003093 160 VWIAT 164 (848)
Q Consensus 160 ~wi~~ 164 (848)
+-|.+
T Consensus 207 i~vig 211 (277)
T 3e61_A 207 IQIIG 211 (277)
T ss_dssp CEEEC
T ss_pred eEEEe
Confidence 44443
No 157
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=94.38 E-value=0.03 Score=57.80 Aligned_cols=154 Identities=13% Similarity=0.098 Sum_probs=92.1
Q ss_pred CCeEEEEc-cCCch---hHHHHHHhhccCCccEEecccCCCCCCCCCCCceEeccCChHHHHHHHHHHHHHcCcEEEEEE
Q 003093 3 GQTVAIIG-PQDAV---TSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAI 78 (848)
Q Consensus 3 ~~V~aiIG-p~~S~---~~~ava~i~~~~~vP~Is~~at~p~ls~~~~p~f~r~~p~d~~q~~ai~~~~~~~~w~~vaii 78 (848)
++|++||= |..+. ........+.+.++|+|......+. ...+ .+..++...+..+++++...|-++++++
T Consensus 70 ~~vdgiIi~~~~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~---~~~~---~V~~d~~~~~~~a~~~L~~~G~~~i~~i 143 (298)
T 3tb6_A 70 QHIDGLIVEPTKSALQTPNIGYYLNLEKNGIPFAMINASYAE---LAAP---SFTLDDVKGGMMAAEHLLSLGHTHMMGI 143 (298)
T ss_dssp TCCSEEEECCSSTTSCCTTHHHHHHHHHTTCCEEEESSCCTT---CSSC---EEEECHHHHHHHHHHHHHHTTCCSEEEE
T ss_pred CCCCEEEEecccccccCCcHHHHHHHHhcCCCEEEEecCcCC---CCCC---EEEeCcHHHHHHHHHHHHHCCCCcEEEE
Confidence 45666663 33322 3334455667789999987654322 1222 3456777778888999888899999999
Q ss_pred EEcCC-CccchHHHHHHHHhccCcEEEEeeecCCCC--ChHHHHHHHHHHhcC--C--CeEEEEEccCCcHHHHHHHHHH
Q 003093 79 YVDDD-HGRNGIAALGDTLAAKRCRISFKAPLSVEA--TEDEITDLLVKVALT--E--SRIIVVHTHYNRGPVVFHVAQY 151 (848)
Q Consensus 79 ~~dd~-~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~--~~~d~~~~l~~i~~~--~--~~viv~~~~~~~~~~~~~~a~~ 151 (848)
..... ......+.|.++++++|+.+.......... ........+.++.+. + +++|+. .+...+..+++++++
T Consensus 144 ~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~~-~~d~~a~g~~~al~~ 222 (298)
T 3tb6_A 144 FKADDTQGVKRMNGFIQAHRERELFPSPDMIVTFTTEEKESKLLEKVKATLEKNSKHMPTAILC-YNDEIALKVIDMLRE 222 (298)
T ss_dssp EESSSHHHHHHHHHHHHHHHHTTCCCCGGGEEEECHHHHTTHHHHHHHHHHHHTTTSCCSEEEC-SSHHHHHHHHHHHHH
T ss_pred cCCCCccHHHHHHHHHHHHHHcCCCCCcceEEEecccchhhhHHHHHHHHHhcCCCCCCeEEEE-eCcHHHHHHHHHHHH
Confidence 85543 334557889999999987643211111110 001112333333322 3 677664 345567789999999
Q ss_pred cCCCCCCeEEEe
Q 003093 152 LGMLGTGYVWIA 163 (848)
Q Consensus 152 ~g~~~~~~~wi~ 163 (848)
+|+..++-+-|.
T Consensus 223 ~g~~vP~di~vv 234 (298)
T 3tb6_A 223 MDLKVPEDMSIV 234 (298)
T ss_dssp TTCCTTTTCEEE
T ss_pred cCCCCCCceEEE
Confidence 998765544444
No 158
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=94.31 E-value=0.8 Score=46.68 Aligned_cols=160 Identities=12% Similarity=0.000 Sum_probs=90.9
Q ss_pred CCCeEEEE-ccCCchhHHHHHHhhccCCccEEecccCCCCCC-C-CCCCceEeccCChHHHHHHHHHHHHHc-C--cEEE
Q 003093 2 EGQTVAII-GPQDAVTSHVVSHVANELQVPLLSFSATDPTLS-S-LQFPYFVRTTQSDQYQMAAIAEIVDHY-G--WREV 75 (848)
Q Consensus 2 ~~~V~aiI-Gp~~S~~~~ava~i~~~~~vP~Is~~at~p~ls-~-~~~p~f~r~~p~d~~q~~ai~~~~~~~-~--w~~v 75 (848)
+.+|++|| -|..+.........+.+.++|+|......+... . ..-++.-.+..++..-+..+++++... | -+++
T Consensus 57 ~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~G~~~~~I 136 (288)
T 1gud_A 57 NKNYKGIAFAPLSSVNLVMPVARAWKKGIYLVNLDEKIDMDNLKKAGGNVEAFVTTDNVAVGAKGASFIIDKLGAEGGEV 136 (288)
T ss_dssp TSSEEEEEECCSSSSTTHHHHHHHHHTTCEEEEESSCCCHHHHHHTTCCCSEEEECCHHHHHHHHHHHHHHHHGGGCEEE
T ss_pred HcCCCEEEEeCCChHHHHHHHHHHHHCCCeEEEECCCCCcccccccCCceeEEECCChHHHHHHHHHHHHHHhCCCCCEE
Confidence 35788866 344333222223334557999998754321100 0 000110234566666777788887665 7 8999
Q ss_pred EEEEEcCCC--ccchHHHHHHHHhcc-CcEEEEeeecCCCCChHHHHHHHHHHhc--CCCeEEEEEccCCcHHHHHHHHH
Q 003093 76 IAIYVDDDH--GRNGIAALGDTLAAK-RCRISFKAPLSVEATEDEITDLLVKVAL--TESRIIVVHTHYNRGPVVFHVAQ 150 (848)
Q Consensus 76 aii~~dd~~--g~~~~~~l~~~l~~~-g~~v~~~~~~~~~~~~~d~~~~l~~i~~--~~~~viv~~~~~~~~~~~~~~a~ 150 (848)
++|...... ...-.+.|.+++++. |+.+.... ....+..+-...+.++.+ ..+++|+.. +...+..++++++
T Consensus 137 ~~i~g~~~~~~~~~R~~Gf~~al~~~~g~~~~~~~--~~~~~~~~~~~~~~~ll~~~~~~~ai~~~-nD~~A~g~~~al~ 213 (288)
T 1gud_A 137 AIIEGKAGNASGEARRNGATEAFKKASQIKLVASQ--PADWDRIKALDVATNVLQRNPNIKAIYCA-NDTMAMGVAQAVA 213 (288)
T ss_dssp EEEECSTTCHHHHHHHHHHHHHHHTCTTEEEEEEE--ECTTCHHHHHHHHHHHHHHCTTCCEEEES-SHHHHHHHHHHHH
T ss_pred EEEeCCCCCchHhHHHHHHHHHHHhCCCcEEEEee--cCCccHHHHHHHHHHHHHhCCCceEEEEC-CCchHHHHHHHHH
Confidence 999854332 234567899999988 88765422 112222333334444433 346766553 4456778999999
Q ss_pred HcCCCCCCeEEEecC
Q 003093 151 YLGMLGTGYVWIATS 165 (848)
Q Consensus 151 ~~g~~~~~~~wi~~~ 165 (848)
++|+. .+...++-|
T Consensus 214 ~~G~~-~dv~vvGfD 227 (288)
T 1gud_A 214 NAGKT-GKVLVVGTD 227 (288)
T ss_dssp HTTCT-TTSEEEEES
T ss_pred hcCCC-CCeEEEEeC
Confidence 99984 344555444
No 159
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=93.99 E-value=0.048 Score=48.86 Aligned_cols=56 Identities=14% Similarity=0.300 Sum_probs=49.0
Q ss_pred CCcchhhhhHHHHhhhcC--ccccccchhHHHHHHHHhhhhhhhccccceeeeeeeec
Q 003093 531 RQVVTIFWFSFSTMFFAH--KEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQ 586 (848)
Q Consensus 531 ~~~~~~~~~~~~~l~~~~--~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~ 586 (848)
.++.+++|+++.++..-| .-.|.+..+|++.++|.++++.+.+...+.+++.+...
T Consensus 42 ~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~~ 99 (137)
T 4h33_A 42 NNYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRCK 99 (137)
T ss_dssp CSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTT
T ss_pred CCHHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999998665 55899999999999999999999999999998877543
No 160
>1zbm_A Hypothetical protein AF1704; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.30A {Archaeoglobus fulgidus} SCOP: c.94.1.1
Probab=93.91 E-value=0.088 Score=53.83 Aligned_cols=99 Identities=16% Similarity=-0.018 Sum_probs=55.9
Q ss_pred HHhhcCCCCeeEE-eCchHHHHHHhhhCCCccCcccCCCHHHHHHHhhcCCCCCceEEEEc-cHHHHHHHHhcCCcEEEe
Q 003093 596 DSLRSSNYPIGYQ-VNSFARNYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVD-DRAYAELFLSTRCEFSIV 673 (848)
Q Consensus 596 ~dL~~s~~~i~~~-~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~-~~~~~~~~~~~~~~l~~~ 673 (848)
+||. |++||+. .++.....++..+. ..+++. .+..+...++.+ |++||.+. +.+... +.+. ++..+
T Consensus 99 ~DLk--GK~Iav~~~~s~~~~ll~~~l~--~~~~~~-~~~~~~~~al~~----G~vDa~~~~~~~~~~-~~~~--g~~~~ 166 (280)
T 1zbm_A 99 ISLD--GKRIAVPGRYTTANLLLKLAVE--DFEPVE-MPFDRIIQAVLD----EEVDAGLLIHEGQIT-YADY--GLKCV 166 (280)
T ss_dssp CCCT--TCEEEESCTTSHHHHHHHHHCS--SCEEEE-CCGGGHHHHHHT----TSSSEEEECSGGGGT-GGGG--TCEEE
T ss_pred hhcC--CCEEEecCCCcHHHHHHHHHhc--cCceEe-cCHHHHHHHHHc----CCCCEEEEechHHhH-HHhc--CCeEe
Confidence 6777 8999996 45544433432222 123433 356788999999 89999774 334443 2222 22222
Q ss_pred CC---c----c-ccCC-ceeeecCC-CC-chHHHHHHHHhhhcc
Q 003093 674 GQ---V----F-TKNG-WGFAFPRD-SP-LAVDISTAILKLSEN 706 (848)
Q Consensus 674 ~~---~----~-~~~~-~~~~~~k~-sp-l~~~in~~i~~l~e~ 706 (848)
.+ . . .+.+ ..++++++ .| +.+.|.+++.+..+.
T Consensus 167 ~~~~~~~~~~~g~~~~~~~~~~~~~~~p~~v~~~~~a~~~a~~~ 210 (280)
T 1zbm_A 167 LDLWDWWSEQVKLPLPLGLNAIRRDLSVEVQEEFLRAMRESIAF 210 (280)
T ss_dssp EEHHHHHHTTCSSCEEEEEEEEETTSCHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHhhCCCCCeeEEEEcccCCHHHHHHHHHHHHHHHHH
Confidence 11 0 0 1112 35778888 56 777777777766543
No 161
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=93.85 E-value=0.3 Score=51.60 Aligned_cols=149 Identities=11% Similarity=0.021 Sum_probs=88.1
Q ss_pred CCeEEEE--ccCCchhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEeccCChHHHHHHHHHHHHHcCcEEEEEEEE
Q 003093 3 GQTVAII--GPQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYV 80 (848)
Q Consensus 3 ~~V~aiI--Gp~~S~~~~ava~i~~~~~vP~Is~~at~p~ls~~~~p~f~r~~p~d~~q~~ai~~~~~~~~w~~vaii~~ 80 (848)
++|++|| +|..... .+.......++|+|...... ....+ .+..++..-+..+++++...|.+++++|..
T Consensus 117 ~~vdGiIi~~~~~~~~--~~~~~~~~~~iPvV~i~~~~----~~~~~---~V~~d~~~~~~~a~~~L~~~G~~~I~~i~g 187 (349)
T 1jye_A 117 QRVSGLIINYPLDDQD--AIAVEAACTNVPALFLDVSD----QTPIN---SIIFSHEDGTRLGVEHLVALGHQQIALLAG 187 (349)
T ss_dssp TTCSCEEEESCCCHHH--HHHHHHHTTTSCEEESSSCT----TSSSC---EEEECHHHHHHHHHHHHHHHTCCSEEEEEC
T ss_pred CCCCEEEEecCCCChh--HHHHHHhhCCCCEEEEcccC----CCCCC---EEEEchHHHHHHHHHHHHHCCCCEEEEEeC
Confidence 4566655 4544322 22233445799999875421 11223 344556666777778877779999999985
Q ss_pred cCCC--ccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhc--CCCeEEEEEccCCcHHHHHHHHHHcCCCC
Q 003093 81 DDDH--GRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVAL--TESRIIVVHTHYNRGPVVFHVAQYLGMLG 156 (848)
Q Consensus 81 dd~~--g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~--~~~~viv~~~~~~~~~~~~~~a~~~g~~~ 156 (848)
+... ...-.+.|.+++++.|+.+.... ....+..+-...+.++.+ ..+++|+.. +...+..+++++++.|+..
T Consensus 188 ~~~~~~~~~R~~Gf~~al~~~gi~~~~~~--~~~~~~~~~~~~~~~ll~~~~~~~ai~~~-nD~~A~g~~~al~~~G~~v 264 (349)
T 1jye_A 188 PLSSVSARLRLAGWHKYLTRNQIQPIAER--EGDWSAMSGFQQTMQMLNEGIVPTAMLVA-NDQMALGAMRAITESGLRV 264 (349)
T ss_dssp CTTSHHHHHHHHHHHHHHHHTTCCCSEEE--ECCSSHHHHHHHHHHHHHTTCCCSEEEES-SHHHHHHHHHHHHHTTCCB
T ss_pred CCCCccHHHHHHHHHHHHHHcCCCccccc--cCCCChHHHHHHHHHHHhCCCCCCEEEEC-ChHHHHHHHHHHHHcCCCC
Confidence 4332 34556889999999997643221 111122222233344333 347777654 4456778999999999876
Q ss_pred CCeEEEe
Q 003093 157 TGYVWIA 163 (848)
Q Consensus 157 ~~~~wi~ 163 (848)
++-+-|.
T Consensus 265 P~disvv 271 (349)
T 1jye_A 265 GADISVV 271 (349)
T ss_dssp TTTBEEE
T ss_pred CCcEEEE
Confidence 5544443
No 162
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=93.83 E-value=0.18 Score=52.09 Aligned_cols=151 Identities=9% Similarity=0.058 Sum_probs=92.2
Q ss_pred CCCeEEEE-ccCCchhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEeccCChHHHHHHHHHHHHHcCcEEEEEEEE
Q 003093 2 EGQTVAII-GPQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYV 80 (848)
Q Consensus 2 ~~~V~aiI-Gp~~S~~~~ava~i~~~~~vP~Is~~at~p~ls~~~~p~f~r~~p~d~~q~~ai~~~~~~~~w~~vaii~~ 80 (848)
+.+|++|| -|..... .....+...++|+|...... .. +.+..+..++..-+..+++++...|-++++++..
T Consensus 81 ~~~vdgiIi~~~~~~~--~~~~~l~~~~iPvV~i~~~~---~~---~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~ 152 (305)
T 3huu_A 81 SKSVDGFILLYSLKDD--PIEHLLNEFKVPYLIVGKSL---NY---ENIIHIDNDNIDAAYQLTQYLYHLGHRHILFLQE 152 (305)
T ss_dssp TTCCSEEEESSCBTTC--HHHHHHHHTTCCEEEESCCC---SS---TTCCEEECCHHHHHHHHHHHHHHTTCCSEEEEEE
T ss_pred hCCCCEEEEeCCcCCc--HHHHHHHHcCCCEEEECCCC---cc---cCCcEEEeCHHHHHHHHHHHHHHCCCCeEEEEcC
Confidence 35677766 3332222 33455667899999875432 11 2233456677777888888888889999999986
Q ss_pred cCCC--ccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHH-hc--CCCeEEEEEccCCcHHHHHHHHHHcCCC
Q 003093 81 DDDH--GRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKV-AL--TESRIIVVHTHYNRGPVVFHVAQYLGML 155 (848)
Q Consensus 81 dd~~--g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i-~~--~~~~viv~~~~~~~~~~~~~~a~~~g~~ 155 (848)
+... .....+.|.+++++.|+.+.. .+.... ..-...+.++ .+ ..+++|+. .+...+..++++++++|+.
T Consensus 153 ~~~~~~~~~R~~Gf~~~l~~~g~~~~~--~~~~~~--~~~~~~~~~~~l~~~~~~~ai~~-~nd~~A~g~~~al~~~g~~ 227 (305)
T 3huu_A 153 SGHYAVTEDRSVGFKQYCDDVKISNDC--VVIKSM--NDLRDFIKQYCIDASHMPSVIIT-SDVMLNMQLLNVLYEYQLR 227 (305)
T ss_dssp SSCBHHHHHHHHHHHHHHHHTTCCCCE--EEECSH--HHHHHHC--------CCCSEEEE-SSHHHHHHHHHHHHHTTCC
T ss_pred CcccchhHHHHHHHHHHHHHcCCCccc--EEecCc--HHHHHHHHHhhhcCCCCCCEEEE-CChHHHHHHHHHHHHcCCC
Confidence 5443 345678899999999987543 111111 1123334444 22 36777664 4555677899999999987
Q ss_pred CCCe-EEEecC
Q 003093 156 GTGY-VWIATS 165 (848)
Q Consensus 156 ~~~~-~wi~~~ 165 (848)
.++- ..++-|
T Consensus 228 vP~di~vig~D 238 (305)
T 3huu_A 228 IPEDIQTATFN 238 (305)
T ss_dssp TTTTCEEEEES
T ss_pred CCcceEEEEEC
Confidence 5543 344433
No 163
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=93.50 E-value=0.2 Score=52.76 Aligned_cols=151 Identities=13% Similarity=0.040 Sum_probs=91.1
Q ss_pred CCeEEEE-ccCCchhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEeccCChHHHHHHHHHHHHHcCcEEEEEEEEc
Q 003093 3 GQTVAII-GPQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVD 81 (848)
Q Consensus 3 ~~V~aiI-Gp~~S~~~~ava~i~~~~~vP~Is~~at~p~ls~~~~p~f~r~~p~d~~q~~ai~~~~~~~~w~~vaii~~d 81 (848)
.+|++|| -|..... .....+...++|+|......+ . +.. .+..++...+..+++++...|.++++++...
T Consensus 117 ~~vdGiIi~~~~~~~--~~~~~l~~~~iPvV~~~~~~~----~--~~~-~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~ 187 (339)
T 3h5o_A 117 HRPDGVLITGLSHAE--PFERILSQHALPVVYMMDLAD----D--GRC-CVGFSQEDAGAAITRHLLSRGKRRIGFLGAQ 187 (339)
T ss_dssp TCCSEEEEECSCCCT--THHHHHHHTTCCEEEEESCCS----S--SCC-EEECCHHHHHHHHHHHHHHTTCCSEEEEEES
T ss_pred CCCCEEEEeCCCCCH--HHHHHHhcCCCCEEEEeecCC----C--CCe-EEEECHHHHHHHHHHHHHHCCCCeEEEEeCC
Confidence 4566655 2222221 334456678999998743211 1 222 5567777778888888888899999999865
Q ss_pred CC-CccchHHHHHHHHhccCcEEEEee-ecCCCCChHHHHHHHHHHhc--CCCeEEEEEccCCcHHHHHHHHHHcCCCCC
Q 003093 82 DD-HGRNGIAALGDTLAAKRCRISFKA-PLSVEATEDEITDLLVKVAL--TESRIIVVHTHYNRGPVVFHVAQYLGMLGT 157 (848)
Q Consensus 82 d~-~g~~~~~~l~~~l~~~g~~v~~~~-~~~~~~~~~d~~~~l~~i~~--~~~~viv~~~~~~~~~~~~~~a~~~g~~~~ 157 (848)
.. ....-.+.|.+++++.|+...... ......+..+-...+.++.. ..+++|+. ++...+..++++++++|+..+
T Consensus 188 ~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~-~nD~~A~g~~~al~~~G~~vP 266 (339)
T 3h5o_A 188 LDERVMKRLDGYRAALDAADCRDAGLEWLDPQPSSMQMGADMLDRALAERPDCDALFC-CNDDLAIGALARSQQLGIAVP 266 (339)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCCCGGGEEEECSCCCHHHHHHHHHHHHHHCTTCCEEEE-SSHHHHHHHHHHHHHTTCCTT
T ss_pred CCccHHHHHHHHHHHHHHCCCCCCChheEecCCCCHHHHHHHHHHHHcCCCCCcEEEE-CChHHHHHHHHHHHHcCCCCC
Confidence 42 334556789999999987211000 11111222333344444433 36777765 445667789999999999766
Q ss_pred CeEEEe
Q 003093 158 GYVWIA 163 (848)
Q Consensus 158 ~~~wi~ 163 (848)
+-+-|.
T Consensus 267 ~disvv 272 (339)
T 3h5o_A 267 ERLAIA 272 (339)
T ss_dssp TTCEEE
T ss_pred CCEEEE
Confidence 544443
No 164
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=93.24 E-value=0.34 Score=50.80 Aligned_cols=142 Identities=12% Similarity=0.075 Sum_probs=88.1
Q ss_pred CeEEEEccCCchhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEeccCChHHHHHHHHHHHHHcCcEEEEEEEEcCC
Q 003093 4 QTVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDD 83 (848)
Q Consensus 4 ~V~aiIGp~~S~~~~ava~i~~~~~vP~Is~~at~p~ls~~~~p~f~r~~p~d~~q~~ai~~~~~~~~w~~vaii~~dd~ 83 (848)
+|++||-... ...+...++|+|......+. .. +-.+..++...+..+++++...|-++++++.....
T Consensus 119 ~vdGiIi~~~-------~~~~~~~~iPvV~~~~~~~~---~~---~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~ 185 (333)
T 3jvd_A 119 QAAGIIHVPV-------VGSIAPEGIPMVQLTRGELG---PG---FPRVLCDDEAGFFQLTESVLGGSGMNIAALVGEES 185 (333)
T ss_dssp TCSEEEECCC-------TTCCC-CCSCEEEECC-------CC---SCEEEECHHHHHHHHHHHHCCSSSCEEEEEESCTT
T ss_pred CCCEEEEcch-------HHHHhhCCCCEEEECccCCC---CC---CCEEEEChHHHHHHHHHHHHHCCCCeEEEEeCCCC
Confidence 5666653222 34456779999987554321 22 23345667777888888888889999999985533
Q ss_pred C--ccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCC-CeEEEEEccCCcHHHHHHHHHHcCCCCCCeE
Q 003093 84 H--GRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTE-SRIIVVHTHYNRGPVVFHVAQYLGMLGTGYV 160 (848)
Q Consensus 84 ~--g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~-~~viv~~~~~~~~~~~~~~a~~~g~~~~~~~ 160 (848)
. ...-.+.|.+++++.|+..... . ...+..+-...+.++.+.. +++|+. .+...+..++++++++|+..++-+
T Consensus 186 ~~~~~~R~~Gf~~al~~~g~~~~~~--~-~~~~~~~~~~~~~~ll~~~~~~ai~~-~nd~~A~g~~~al~~~G~~vP~di 261 (333)
T 3jvd_A 186 LSTTQERMRGISHAASIYGAEVTFH--F-GHYSVESGEEMAQVVFNNGLPDALIV-ASPRLMAGVMRAFTRLNVRVPHDV 261 (333)
T ss_dssp SHHHHHHHHHHHHHHHHTTCEEEEE--E-CCSSHHHHHHHHHHHHHTCCCSEEEE-CCHHHHHHHHHHHHHTTCCTTTTC
T ss_pred CccHHHHHHHHHHHHHHCCCCEEEe--c-CCCCHHHHHHHHHHHhcCCCCcEEEE-CCHHHHHHHHHHHHHcCCCCCCce
Confidence 3 4456789999999999872211 0 1122344444455554433 777764 444567789999999999765443
Q ss_pred EE
Q 003093 161 WI 162 (848)
Q Consensus 161 wi 162 (848)
-|
T Consensus 262 sv 263 (333)
T 3jvd_A 262 VI 263 (333)
T ss_dssp EE
T ss_pred EE
Confidence 33
No 165
>1us5_A Putative GLUR0 ligand binding core; receptor, membrane protein, glutamate receptor, L-glutamate; HET: GLU; 1.5A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 1us4_A*
Probab=92.85 E-value=0.23 Score=51.58 Aligned_cols=61 Identities=13% Similarity=0.097 Sum_probs=39.6
Q ss_pred CCCCChHHhhcCCCCeeE-EeCchHHHHHH---hhhCCCccCc--ccCCCHHHHHHHhhcCCCCCceEEEEcc
Q 003093 590 SPIKGIDSLRSSNYPIGY-QVNSFARNYLV---DELNIDESRL--VPLNSPEEYAKALKDGPHKGGVAAVVDD 656 (848)
Q Consensus 590 ~~i~sl~dL~~s~~~i~~-~~~s~~~~~l~---~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~a~~~~ 656 (848)
.++++++||. ++++++ ..|+.....+. +..+.....+ ..+.+..+.+.++.. |++|+.+..
T Consensus 121 ~~i~sl~dL~--g~~i~~~~~gs~~~~~~~~~l~~~G~~~~~v~~~~~~~~~~~~~al~~----G~vda~~~~ 187 (314)
T 1us5_A 121 AGIRTVADLK--GKRVVVGDVGSGTEQNARQILEAYGLTFDDLGQAIRVSASQGIQLMQD----KRADALFYT 187 (314)
T ss_dssp SSCSSGGGGT--TSEEECCCTTCHHHHHHHHHHHHTTCCGGGSSEEECCCHHHHHHHHHT----TSCSEEEEE
T ss_pred CCCCcHHHhC--CCEeecCCCCchHHHHHHHHHHHcCCCHHHcCceecCCHHHHHHHHHc----CCccEEEEc
Confidence 4688999998 777877 45664333221 3334432223 245678889999998 888888754
No 166
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=92.69 E-value=0.15 Score=51.99 Aligned_cols=127 Identities=8% Similarity=-0.017 Sum_probs=84.3
Q ss_pred hhccCCccEEecccC-CCCCCCCCCCceEeccCChHHHHHHHHHHHHHcCcEEEEEEEEcCC--CccchHHHHHHHHhcc
Q 003093 23 VANELQVPLLSFSAT-DPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDD--HGRNGIAALGDTLAAK 99 (848)
Q Consensus 23 i~~~~~vP~Is~~at-~p~ls~~~~p~f~r~~p~d~~q~~ai~~~~~~~~w~~vaii~~dd~--~g~~~~~~l~~~l~~~ 99 (848)
.+...++|+|..... .+ + +.+ .+..++...+..+++++. .|-++++++..... ......+.|.+++++.
T Consensus 80 ~~~~~~iPvV~~~~~~~~---~---~~~-~V~~D~~~~g~~a~~~L~-~G~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~ 151 (277)
T 3hs3_A 80 PNFHLNTPLVMYDSANIN---D---DIV-RIVSNNTKGGKESIKLLS-KKIEKVLIQHWPLSLPTIRERIEAMTAEASKL 151 (277)
T ss_dssp TTCCCSSCEEEESCCCCC---S---SSE-EEEECHHHHHHHHHHTSC-TTCCEEEEEESCTTSHHHHHHHHHHHHHHHHT
T ss_pred HHHhCCCCEEEEcccccC---C---CCE-EEEEChHHHHHHHHHHHH-hCCCEEEEEeCCCcCccHHHHHHHHHHHHHHC
Confidence 346679999987554 22 1 223 566777777888888877 99999999985433 3445678999999999
Q ss_pred CcEEEEeeecCCCCChHHHHHHHHHHhc--CCCeEEEEEccCCcHHHHHHHHHHcCCCCCCeEEEe
Q 003093 100 RCRISFKAPLSVEATEDEITDLLVKVAL--TESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIA 163 (848)
Q Consensus 100 g~~v~~~~~~~~~~~~~d~~~~l~~i~~--~~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~~wi~ 163 (848)
|+.+... ...... + ...+.++.+ .++++|+. .+...+..++++++++|+..++-+-+.
T Consensus 152 g~~~~~~-~~~~~~---~-~~~~~~~l~~~~~~~ai~~-~~d~~A~g~~~al~~~g~~vP~di~vi 211 (277)
T 3hs3_A 152 KIDYLLE-ETPENN---P-YISAQSALNKSNQFDAIIT-VNDLYAAEIIKEAKRRNLKIPDDFQLV 211 (277)
T ss_dssp TCEEEEE-ECCSSC---H-HHHHHHHHHTGGGCSEEEC-SSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred CCCCCCC-CccCCc---h-HHHHHHHHcCCCCCCEEEE-CCHHHHHHHHHHHHHcCCCCCCceEEE
Confidence 9987654 333221 2 334444433 35677654 444567789999999999765544443
No 167
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=92.41 E-value=0.84 Score=46.72 Aligned_cols=83 Identities=17% Similarity=0.203 Sum_probs=53.3
Q ss_pred ceEEEEecCCCCccceEEeCCCcceeeeeHHHHHHHHHhCCCCcceEEeeCCCCCCCCChhHHHHHHhcCeeeEEeecee
Q 003093 376 RHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDIA 455 (848)
Q Consensus 376 ~~lrv~v~~~~~~~p~~~~~~~~~~~G~~~dll~~i~~~l~~~~~~~~~~~~~~~~n~s~~~~i~~l~~g~~D~~~~~~~ 455 (848)
.+|+||+... + ...+-.+++..+.++.+ .+++.... ++...++.+|.+|++|+++..-.
T Consensus 95 g~l~i~~~~~--~-----------~~~~l~~~l~~f~~~~P-~i~i~l~~-------~~~~~~~~~l~~g~~Dl~i~~~~ 153 (306)
T 3fzv_A 95 GQIDIGCFET--V-----------APLYLPGLIAGFRQAYP-GVEIRIRD-------GEQQELVQGLTSGRFDLAFLYEH 153 (306)
T ss_dssp EEEEEEEEGG--G-----------HHHHHHHHHHHHHHHCT-TEEEEEEE-------ECHHHHHHHHHHTSCSEEEECSS
T ss_pred ceEEEEechh--h-----------hHHHHHHHHHHHHHHCC-CeEEEEEe-------CCHHHHHHHHHCCCccEEEEecc
Confidence 5789998731 1 12455677888888774 23344443 45788999999999999987332
Q ss_pred eecCceeeeeeccccc-ccceEEEEeccC
Q 003093 456 IITNRTKMADFTQPYI-ESGLVVVAPVRK 483 (848)
Q Consensus 456 ~t~~R~~~~dfs~p~~-~~~~~~v~~~~~ 483 (848)
... ..+. ..+.. ...++++++...
T Consensus 154 ~~~---~~l~-~~~l~~~~~~~~v~~~~~ 178 (306)
T 3fzv_A 154 DLD---STIE-TEPLMPPQRPHALLPEGH 178 (306)
T ss_dssp SCC---TTEE-EEESSCCBCCEEEEETTC
T ss_pred ccc---cccc-eeeeeeccccEEEecCCC
Confidence 222 2222 34555 677778887665
No 168
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=91.70 E-value=0.15 Score=40.89 Aligned_cols=51 Identities=10% Similarity=0.087 Sum_probs=43.7
Q ss_pred CcchhhhhHHHHhhhcC--ccccccchhHHHHHHHHhhhhhhhccccceeeee
Q 003093 532 QVVTIFWFSFSTMFFAH--KEKTVSALGRLVLIIWLFVVLIINSSYTASLTSI 582 (848)
Q Consensus 532 ~~~~~~~~~~~~l~~~~--~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~ 582 (848)
++.+++|+++.++...| .-.|.+..+|++.+.|.++++.+.+...+.+.+.
T Consensus 28 ~~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~ 80 (82)
T 3ldc_A 28 SWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEF 80 (82)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999998665 5589999999999999999999888877776544
No 169
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=91.65 E-value=0.54 Score=49.04 Aligned_cols=151 Identities=7% Similarity=-0.082 Sum_probs=89.7
Q ss_pred CCeEEEE-ccCCchhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEeccCChHHHHHHHHHHHHH-------cCcEE
Q 003093 3 GQTVAII-GPQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDH-------YGWRE 74 (848)
Q Consensus 3 ~~V~aiI-Gp~~S~~~~ava~i~~~~~vP~Is~~at~p~ls~~~~p~f~r~~p~d~~q~~ai~~~~~~-------~~w~~ 74 (848)
++|++|| -|..+.........+...++|+|......+.. .... ..+..++...+..+++++.. .|-++
T Consensus 58 ~~vdgiIi~~~~~~~~~~~~~~~~~~giPvV~~~~~~~~~--~~~~--~~V~~D~~~~g~~a~~~l~~~~~~~~~~G~~~ 133 (330)
T 3uug_A 58 KGVKVLVIASIDGTTLSDVLKQAGEQGIKVIAYDRLIRNS--GDVS--YYATFDNFQVGVLQATSITDKLGLKDGKGPFN 133 (330)
T ss_dssp HTCSEEEECCSSGGGGHHHHHHHHHTTCEEEEESSCCCSC--TTCC--EEEEECHHHHHHHHHHHHHHHHTGGGTCCCEE
T ss_pred cCCCEEEEEcCCchhHHHHHHHHHHCCCCEEEECCCCCCC--Ccee--EEEEeCHHHHHHHHHHHHHHHhcccCCCCceE
Confidence 3566655 55555455555666778899999876543321 1122 23455677778888888766 68899
Q ss_pred EEEEEEcCC--CccchHHHHHHHHhcc---C-cEEEEee-----ecCCCCChHHHHHHHHHHhc-----CCCeEEEEEcc
Q 003093 75 VIAIYVDDD--HGRNGIAALGDTLAAK---R-CRISFKA-----PLSVEATEDEITDLLVKVAL-----TESRIIVVHTH 138 (848)
Q Consensus 75 vaii~~dd~--~g~~~~~~l~~~l~~~---g-~~v~~~~-----~~~~~~~~~d~~~~l~~i~~-----~~~~viv~~~~ 138 (848)
++++..... ......+.|.++++++ | +.+.... ......+...-...+.++.. ..+++|+. .+
T Consensus 134 i~~i~g~~~~~~~~~R~~Gf~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ai~~-~n 212 (330)
T 3uug_A 134 IELFGGSPDDNNAFFFYDGAMSVLKPYIDSGKLVVKSGQMGMDKVGTLRWDPATAQARMDNLLSAYYTDAKVDAVLS-PY 212 (330)
T ss_dssp EEECBCCTTCHHHHHHHHHHHHHHHHHHHHTSEECTTCCCSHHHHBCGGGCHHHHHHHHHHHHHHHCSSSCCCEEEC-SS
T ss_pred EEEEECCCCCchHHHHHHHHHHHHHhccccCceEEeecccccccccCCCCCHHHHHHHHHHHHHhcCCCCCeEEEEE-CC
Confidence 999964332 2345568888888886 3 5543211 00111122233333333333 45666553 44
Q ss_pred CCcHHHHHHHHHHcCCCCCC
Q 003093 139 YNRGPVVFHVAQYLGMLGTG 158 (848)
Q Consensus 139 ~~~~~~~~~~a~~~g~~~~~ 158 (848)
...+..++++++++|+..++
T Consensus 213 d~~A~g~~~al~~~g~~vP~ 232 (330)
T 3uug_A 213 DGLSIGIISSLKGVGYGTKD 232 (330)
T ss_dssp HHHHHHHHHHHHHTTCSSSS
T ss_pred CchHHHHHHHHHHcCCCCCC
Confidence 45677899999999987654
No 170
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=91.41 E-value=0.087 Score=43.93 Aligned_cols=58 Identities=12% Similarity=0.295 Sum_probs=49.7
Q ss_pred CCcchhhhhHHHHhhhcC--ccccccchhHHHHHHHHhhhhhhhccccceeeeeeeeccc
Q 003093 531 RQVVTIFWFSFSTMFFAH--KEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKL 588 (848)
Q Consensus 531 ~~~~~~~~~~~~~l~~~~--~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~ 588 (848)
.++.+++|+++.++...| .-.|.+..+|++.++|.++++.+.+...+.+++.++.++.
T Consensus 31 ~~~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~~~~~~~~ 90 (97)
T 3ouf_A 31 LRPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSI 90 (97)
T ss_dssp CCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred CCHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 468999999999998665 4589999999999999999999999999988887765544
No 171
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=91.40 E-value=0.013 Score=54.79 Aligned_cols=72 Identities=19% Similarity=0.199 Sum_probs=57.0
Q ss_pred HHHhhhhhcccCCCCCCCCCCCcchhhhhHHHHhhhcC--ccccccchhHHHHHHHHhhhhhhhccccceeeeeeeec
Q 003093 511 GAVVWILEHRLNDEFRGPPKRQVVTIFWFSFSTMFFAH--KEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQ 586 (848)
Q Consensus 511 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~ 586 (848)
++++|.++... .++...++.+++||++.++...| .-.|.+..+|++.++|.++++++.+...+.+++.++..
T Consensus 50 a~~~~~~e~~~----~~~~~~~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~~ 123 (166)
T 3pjs_K 50 SYLAVLAERGA----PGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGQ 123 (166)
T ss_dssp SSSSSSTTSSS----TTCCCCSTTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSSSSSS
T ss_pred HHHHHHHhcCC----CCcccCCHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555432 23344678999999999998665 55899999999999999999999999999999998753
No 172
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=91.28 E-value=3.3 Score=42.25 Aligned_cols=140 Identities=14% Similarity=0.081 Sum_probs=78.6
Q ss_pred CCCeEEEEccCCchhHHHHHHhhccC-CccEEecccCCCCCCCCCCCceEeccCChHHHHHHHH-HHHHHc-CcEEEEEE
Q 003093 2 EGQTVAIIGPQDAVTSHVVSHVANEL-QVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIA-EIVDHY-GWREVIAI 78 (848)
Q Consensus 2 ~~~V~aiIGp~~S~~~~ava~i~~~~-~vP~Is~~at~p~ls~~~~p~f~r~~p~d~~q~~ai~-~~~~~~-~w~~vaii 78 (848)
+++|++||..... ...++..++.++ ++|++......+ . +.+-.... |..++..++ .++.++ +-++|++|
T Consensus 61 ~~~vdgIi~~~~~-~~~~~~~~~~~~p~~p~v~id~~~~---~---~~~~~v~~-d~~~g~~lag~la~~l~~~~~Ig~i 132 (296)
T 2hqb_A 61 DGGVNLIFGHGHA-FAEYFSTIHNQYPDVHFVSFNGEVK---G---ENITSLHF-EGYAMGYFGGMVAASMSETHKVGVI 132 (296)
T ss_dssp HTTCCEEEECSTH-HHHHHHTTTTSCTTSEEEEESCCCC---S---SSEEEEEE-CCHHHHHHHHHHHHHTCSSSEEEEE
T ss_pred HCCCCEEEEcCHh-HHHHHHHHHHHCCCCEEEEEecCcC---C---CCEEEEEe-chHHHHHHHHHHHHhhccCCeEEEE
Confidence 3578888875432 334455666554 789887643211 1 22222223 333433333 223332 45899999
Q ss_pred EEcCCCccchHHHHHHHHhccCcEEEEeeecCCCC-ChHHHHHHHHHHhcCCCeEEEEEccCCcHHHHHHHHHHcC
Q 003093 79 YVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEA-TEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLG 153 (848)
Q Consensus 79 ~~dd~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~-~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~~~~~a~~~g 153 (848)
...... . ....|.+.+++.|.. .....+.... +...-.....++.+.++|+|+. .+...+..+++++++.|
T Consensus 133 ~g~~~~-~-r~~Gf~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~a~~ll~~~~daI~~-~~D~~a~Gv~~a~~e~G 204 (296)
T 2hqb_A 133 AAFPWQ-P-EVEGFVDGAKYMNES-EAFVRYVGEWTDADKALELFQELQKEQVDVFYP-AGDGYHVPVVEAIKDQG 204 (296)
T ss_dssp ESCTTC-H-HHHHHHHHHHHTTCC-EEEEEECSSSSCHHHHHHHHHHHHTTTCCEEEC-CCTTTHHHHHHHHHHHT
T ss_pred cCcCch-h-hHHHHHHHHHHhCCC-eEEEEeeccccCHHHHHHHHHHHHHCCCcEEEE-CCCCCCHHHHHHHHHcC
Confidence 854332 2 778899999998874 2222222111 2223334455555567887764 44556677899999988
No 173
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=91.09 E-value=2.8 Score=42.89 Aligned_cols=83 Identities=16% Similarity=0.165 Sum_probs=53.3
Q ss_pred ceEEEEecCCCCccceEEeCCCcceeeeeHHHHHHHHHhCCCCcceEEeeCCCCCCCCChhHHHHHHhcCeeeEEeec--
Q 003093 376 RHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGD-- 453 (848)
Q Consensus 376 ~~lrv~v~~~~~~~p~~~~~~~~~~~G~~~dll~~i~~~l~~~~~~~~~~~~~~~~n~s~~~~i~~l~~g~~D~~~~~-- 453 (848)
.+||||+.. .. ...+-.+++..+.++.+ .+++.... ++...++.+|.+|++|+++..
T Consensus 101 ~~l~Ig~~~--~~-----------~~~~l~~~l~~f~~~~P-~i~i~l~~-------~~~~~~~~~l~~g~~Dl~i~~~~ 159 (310)
T 2esn_A 101 RTFVFAATD--YT-----------AFALLPPLMNRLQHSAP-GVRLRLVN-------AERKLSVEALASGRIDFALGYDE 159 (310)
T ss_dssp CEEEEECCH--HH-----------HHHHHHHHHHHHHHHST-TCEEEEEC-------CSSSCCHHHHHHTSSSEEEECCS
T ss_pred ceEEEEeCh--HH-----------HHHHHHHHHHHHHHHCC-CeEEEEEe-------CCcccHHHHHHcCCCCEEEecCc
Confidence 578988762 11 12455677788887775 34455543 335578899999999999874
Q ss_pred -eeeecCceeeeeecccccccceEEEEeccC
Q 003093 454 -IAIITNRTKMADFTQPYIESGLVVVAPVRK 483 (848)
Q Consensus 454 -~~~t~~R~~~~dfs~p~~~~~~~~v~~~~~ 483 (848)
..... ..+ -..|.....++++++...
T Consensus 160 ~~~~~~---~~l-~~~~l~~~~~~~v~~~~~ 186 (310)
T 2esn_A 160 EHERLP---EGI-QAHDWFADRYVVVARRDH 186 (310)
T ss_dssp TTCCCC---TTE-EEEEEEEECEEEEEESSC
T ss_pred ccccCC---cCc-ceeeeeccceEEEEeCCC
Confidence 22211 122 245777888899888665
No 174
>1i6a_A OXYR, hydrogen peroxide-inducible genes activator; OXYR regulatory domain, oxidized form, transcription; 2.30A {Escherichia coli} SCOP: c.94.1.1 PDB: 1i69_A
Probab=91.06 E-value=0.23 Score=48.11 Aligned_cols=83 Identities=12% Similarity=0.149 Sum_probs=56.1
Q ss_pred ceEEEEecCCCCccceEEeCCCcceeeeeHHHHHHHHHhCCCCcceEEeeCCCCCCCCChhHHHHHHhcCeeeEEeecee
Q 003093 376 RHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDIA 455 (848)
Q Consensus 376 ~~lrv~v~~~~~~~p~~~~~~~~~~~G~~~dll~~i~~~l~~~~~~~~~~~~~~~~n~s~~~~i~~l~~g~~D~~~~~~~ 455 (848)
.+||||+... . ...+-.+++..+.++.+ .++++... ++...++++|.+|++|+++....
T Consensus 5 g~lrIg~~~~--~-----------~~~~l~~~l~~f~~~~P-~v~l~l~~-------~~~~~~~~~l~~g~~Dl~i~~~~ 63 (219)
T 1i6a_A 5 GPLHIGLIPT--V-----------GPYLLPHIIPMLHQTFP-KLEMYLHE-------AQTHQLLAQLDSGKLDAVILALV 63 (219)
T ss_dssp EEEEEEECTT--T-----------HHHHHHHHHHHHHHHCT-TEEEEEEE-------CCHHHHHHHHHHTSCSEEEEECC
T ss_pred eEEEEEeccc--h-----------hhhhhhHHHHHHHHHCC-CeEEEEEE-------CChHHHHHHHHcCCeeEEEecCC
Confidence 4788888631 1 12456778888888875 44555554 45889999999999999986322
Q ss_pred eecCceeeeeecccccccceEEEEeccC
Q 003093 456 IITNRTKMADFTQPYIESGLVVVAPVRK 483 (848)
Q Consensus 456 ~t~~R~~~~dfs~p~~~~~~~~v~~~~~ 483 (848)
.. ...+. ..|.....+++++++..
T Consensus 64 ~~---~~~l~-~~~l~~~~~~~v~~~~h 87 (219)
T 1i6a_A 64 KE---SEAFI-EVPLFDEPMLLAIYEDH 87 (219)
T ss_dssp GG---GTTSE-EEEEEEEEEEEEEETTS
T ss_pred CC---CCCcc-eeeeecccEEEEEcCCC
Confidence 11 12222 35778888999988765
No 175
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=90.70 E-value=0.18 Score=52.35 Aligned_cols=62 Identities=13% Similarity=0.110 Sum_probs=52.5
Q ss_pred CCCCCCcchhhhhHHHHhhhcC--ccccccchhHHHHHHHHhhhhhhhccccceeeeeeeeccc
Q 003093 527 GPPKRQVVTIFWFSFSTMFFAH--KEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKL 588 (848)
Q Consensus 527 ~~~~~~~~~~~~~~~~~l~~~~--~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~ 588 (848)
+....++..++||++.++...| .-.|.+..+|++.+++.++++++.+.-++.+++.++.+..
T Consensus 91 ~~~~~s~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~~~~~ 154 (333)
T 1p7b_A 91 NQSPPGFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFARPRA 154 (333)
T ss_dssp CSSSSSTHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred CCCCCcHHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345678999999999998665 5579999999999999999999999999999988876653
No 176
>2hxr_A HTH-type transcriptional regulator CYNR; CYNR transcriptional regulator LYSR struc genomics, PSI-2, protein structure initiative; 2.05A {Escherichia coli} PDB: 3hfu_A
Probab=90.60 E-value=4.2 Score=39.40 Aligned_cols=83 Identities=18% Similarity=0.251 Sum_probs=54.9
Q ss_pred ceEEEEecCCCCccceEEeCCCcceeeeeHHHHHHHHHhCCCCcceEEeeCCCCCCCCChhHHHHHHhcCeeeEEeecee
Q 003093 376 RHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDIA 455 (848)
Q Consensus 376 ~~lrv~v~~~~~~~p~~~~~~~~~~~G~~~dll~~i~~~l~~~~~~~~~~~~~~~~n~s~~~~i~~l~~g~~D~~~~~~~ 455 (848)
.+||||+... . ...+-..++..+.++.+ .+++.... ++...++++|.+|++|+++....
T Consensus 30 g~l~Ig~~~~--~-----------~~~~l~~~l~~f~~~~P-~v~l~~~~-------~~~~~~~~~l~~g~~Dl~i~~~~ 88 (238)
T 2hxr_A 30 GSLRIAVTPT--F-----------TSYFIGPLMADFYARYP-SITLQLQE-------MSQEKIEDMLCRDELDVGIAFAP 88 (238)
T ss_dssp -CEEEEECHH--H-----------HTTTHHHHHHHHHHHCT-TSCEEEEE-------CCHHHHHHHHHTTSCSEEEEESS
T ss_pred CeEEEeechh--h-----------HHHHHHHHHHHHHHhCC-CcEEEEEE-------CCHHHHHHHHHcCCCcEEEEcCC
Confidence 4789988631 1 12455678888888875 34455554 45788999999999999986322
Q ss_pred eecCceeeeeecccccccceEEEEeccC
Q 003093 456 IITNRTKMADFTQPYIESGLVVVAPVRK 483 (848)
Q Consensus 456 ~t~~R~~~~dfs~p~~~~~~~~v~~~~~ 483 (848)
.. ...+. +.+.....+++++++..
T Consensus 89 ~~---~~~l~-~~~l~~~~~~~v~~~~h 112 (238)
T 2hxr_A 89 VH---SPELE-AIPLLTESLALVVAQHH 112 (238)
T ss_dssp CC---CTTEE-EEEEEEEEEEEEEETTS
T ss_pred CC---cccce-eeeeccCcEEEEEcCCC
Confidence 21 12222 35778888999988665
No 177
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=90.55 E-value=0.19 Score=43.23 Aligned_cols=54 Identities=13% Similarity=0.316 Sum_probs=46.9
Q ss_pred CcchhhhhHHHHhhhcC--ccccccchhHHHHHHHHhhhhhhhccccceeeeeeee
Q 003093 532 QVVTIFWFSFSTMFFAH--KEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTV 585 (848)
Q Consensus 532 ~~~~~~~~~~~~l~~~~--~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~ 585 (848)
++.+++|+++.++...| .-.|.+..+|++.++|.++++.+.+...+.+.+.++.
T Consensus 49 ~~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~~ 104 (114)
T 2q67_A 49 RPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQL 104 (114)
T ss_dssp CHHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999999665 5589999999999999999999999888888777644
No 178
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=90.53 E-value=0.55 Score=49.92 Aligned_cols=132 Identities=7% Similarity=0.027 Sum_probs=81.6
Q ss_pred HhhccCCccEEecccCCCCCCCCCCCceEeccCChHHHHHHHHHHHHHcCcEEEEEEEEc-------------------C
Q 003093 22 HVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVD-------------------D 82 (848)
Q Consensus 22 ~i~~~~~vP~Is~~at~p~ls~~~~p~f~r~~p~d~~q~~ai~~~~~~~~w~~vaii~~d-------------------d 82 (848)
..+...++|+|...... .....+ .+..++..-+..+++++...|-+++++|... .
T Consensus 145 ~~l~~~~iPvV~i~~~~---~~~~~~---~V~~D~~~~~~~a~~~L~~~G~r~I~~i~~~~~~~~~~g~~~~~~~~~~~~ 218 (366)
T 3h5t_A 145 DAIRARGLPAVIADQPA---REEGMP---FIAPNNRKAIAPAAQALIDAGHRKIGILSIRLDRANNDGEVTRERLENAQY 218 (366)
T ss_dssp HHHHHHTCCEEEESSCC---SCTTCC---EEEECHHHHTHHHHHHHHHTTCCSEEEEEECCSSSCCCEECCHHHHHTCCC
T ss_pred HHHHHCCCCEEEECCcc---CCCCCC---EEEeChHHHHHHHHHHHHHCCCCcEEEEecccccccccCcccccccccccc
Confidence 44556699999875422 112223 3456777778888888888899999999832 2
Q ss_pred CCccchHHHHHHHHhccCcEEEEeeec-CCCCChHHHHHHHHHHhc--CCCeEEEEEccCCcHHHHHHHHHHcCCCCCCe
Q 003093 83 DHGRNGIAALGDTLAAKRCRISFKAPL-SVEATEDEITDLLVKVAL--TESRIIVVHTHYNRGPVVFHVAQYLGMLGTGY 159 (848)
Q Consensus 83 ~~g~~~~~~l~~~l~~~g~~v~~~~~~-~~~~~~~d~~~~l~~i~~--~~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~ 159 (848)
.....-.+.|.+++++.|+.+.....+ ....+..+-...+.++.+ ..+++||.. +...+..++++++++|+..++-
T Consensus 219 ~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~~-nD~~A~g~~~al~~~G~~vP~d 297 (366)
T 3h5t_A 219 QVQRDRVRGAMEVFIEAGIDPGTVPIMECWINNRQHNFEVAKELLETHPDLTAVLCT-VDALAFGVLEYLKSVGKSAPAD 297 (366)
T ss_dssp TTHHHHHHHHHHHHHHHTCCGGGSCEEEESSCCHHHHHHHHHHHHHHCTTCCEEEES-SHHHHHHHHHHHHHTTCCTTTT
T ss_pred chHHHHHHHHHHHHHHCCCCCCcceEEEcCCCCHHHHHHHHHHHHcCCCCCcEEEEC-CcHHHHHHHHHHHHcCCCCCCc
Confidence 233456789999999998763210001 111122333334444432 357777654 4456777999999999875543
Q ss_pred E
Q 003093 160 V 160 (848)
Q Consensus 160 ~ 160 (848)
+
T Consensus 298 i 298 (366)
T 3h5t_A 298 L 298 (366)
T ss_dssp C
T ss_pred e
Confidence 3
No 179
>2ql3_A Probable transcriptional regulator, LYSR family P; APC7314, rhodococcus RHA1, structural genomics, PSI-2; HET: MSE; 2.05A {Rhodococcus SP}
Probab=90.46 E-value=1.9 Score=40.84 Aligned_cols=83 Identities=13% Similarity=0.098 Sum_probs=54.5
Q ss_pred ceEEEEecCCCCccceEEeCCCcceeeeeHHHHHHHHHhCCCCcceEEeeCCCCCCCCChhHHHHHHhcCeeeEEeecee
Q 003093 376 RHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDIA 455 (848)
Q Consensus 376 ~~lrv~v~~~~~~~p~~~~~~~~~~~G~~~dll~~i~~~l~~~~~~~~~~~~~~~~n~s~~~~i~~l~~g~~D~~~~~~~ 455 (848)
.+||||+... . ...+-.+++..+.++.+ .++++... ++...+.++|.+|++|+++....
T Consensus 5 g~l~Ig~~~~--~-----------~~~~l~~~l~~f~~~~P-~i~i~l~~-------~~~~~l~~~l~~g~~Dl~i~~~~ 63 (209)
T 2ql3_A 5 GPIAVGCYPA--L-----------GPTILPSMLYAFTAEYP-RASVEFRE-------DTQNRLRTQLEGGELDVAIVYDL 63 (209)
T ss_dssp EEEEEEECGG--G-----------TTTTHHHHHHHHHHHCT-TEEEEEEE-------CCHHHHHHHHHTTSCSEEEEESS
T ss_pred eeEEEeechh--h-----------hhhhHHHHHHHHHHHCC-CceEEEEE-------CcHHHHHHHHHcCCccEEEEecC
Confidence 5788888631 1 12445678888888875 34455544 45788999999999999986321
Q ss_pred eecCceeeeeecccccccceEEEEeccC
Q 003093 456 IITNRTKMADFTQPYIESGLVVVAPVRK 483 (848)
Q Consensus 456 ~t~~R~~~~dfs~p~~~~~~~~v~~~~~ 483 (848)
.. ...+. +.+.....+++++++..
T Consensus 64 ~~---~~~l~-~~~l~~~~~~~v~~~~h 87 (209)
T 2ql3_A 64 DL---SPEWQ-TVPLMTREPMVVLGAEH 87 (209)
T ss_dssp SC---CTTEE-EEEEEEECCEEEEETTC
T ss_pred CC---CCCce-EEEeecCceEEEEeCCC
Confidence 11 11222 35777888888888654
No 180
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=90.23 E-value=0.055 Score=56.01 Aligned_cols=134 Identities=12% Similarity=0.071 Sum_probs=82.6
Q ss_pred HHhhccCCccEEecccCCCCCCCCCCCceEeccCChHHHHHHHHHHHHHcCcEEEEEEEEcCCC--ccchHHHHHHHHhc
Q 003093 21 SHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDH--GRNGIAALGDTLAA 98 (848)
Q Consensus 21 a~i~~~~~vP~Is~~at~p~ls~~~~p~f~r~~p~d~~q~~ai~~~~~~~~w~~vaii~~dd~~--g~~~~~~l~~~l~~ 98 (848)
...+...++|+|......+. . +.+..+..++...+..+++++...|-++++++...... .....+.|.+++++
T Consensus 85 ~~~~~~~~iPvV~~~~~~~~---~--~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~ 159 (301)
T 3miz_A 85 DPESGDVSIPTVMINCRPQT---R--ELLPSIEPDDYQGARDLTRYLLERGHRRIGYIRLNPILLGAELRLDAFRRTTSE 159 (301)
T ss_dssp CCCCTTCCCCEEEEEEECSS---T--TSSCEEEECHHHHHHHHHHHHHTTTCCSEEEEECCTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCEEEECCCCCC---C--CCCCEEeeChHHHHHHHHHHHHHcCCCeEEEEecCccchhHHHHHHHHHHHHHH
Confidence 34556779999987553321 1 02233556777778888888888899999999855443 34567889999999
Q ss_pred cCcEE----EEee---ecCCCCChHHHHHHHHHHhc--CCCeEEEEEccCCcHHHHHHHHHHcCCCCCCeEEE
Q 003093 99 KRCRI----SFKA---PLSVEATEDEITDLLVKVAL--TESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWI 162 (848)
Q Consensus 99 ~g~~v----~~~~---~~~~~~~~~d~~~~l~~i~~--~~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~~wi 162 (848)
.|+.+ .... .+...... ....+.++.. ..+++|+.. +...+..++++++++|+..++-+-|
T Consensus 160 ~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~ai~~~-~d~~A~g~~~al~~~g~~vP~di~v 229 (301)
T 3miz_A 160 FGLTENDLSISLGMDGPVGAENNY--VFAAATEMLKQDDRPTAIMSG-NDEMAIQIYIAAMALGLRIPQDVSI 229 (301)
T ss_dssp HTCCGGGEEEEECEESSTTSCEEC--HHHHHHHHHTSTTCCSEEEES-SHHHHHHHHHHHHTTTCCHHHHCEE
T ss_pred cCCCCCcceEEEcCCCCcCccccH--HHHHHHHHHcCCCCCcEEEEC-CHHHHHHHHHHHHHcCCCCCCCeeE
Confidence 98753 2211 12211111 0123333333 357777654 4456778999999999865443333
No 181
>4esw_A Pyrimidine biosynthesis enzyme THI13; thiamin pyrimidine biosynthesis, transferase; HET: CIT; 1.60A {Candida albicans} PDB: 4esx_A*
Probab=90.04 E-value=0.77 Score=48.29 Aligned_cols=66 Identities=15% Similarity=0.247 Sum_probs=40.6
Q ss_pred CCCCChHHhhcCCCCeeEEeCchHHHHHH---hhhCCCccCcccCCCHHHHHHHhhcCCCCCceEEEEccHHHHHH
Q 003093 590 SPIKGIDSLRSSNYPIGYQVNSFARNYLV---DELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAEL 662 (848)
Q Consensus 590 ~~i~sl~dL~~s~~~i~~~~~s~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~ 662 (848)
+.+++++||. |++||+. ++....++. ...+.....+..+....+...++.. |.+||.+.-.++...
T Consensus 101 ~~~~~~~dLk--GK~ig~~-~~~~~~~l~~~L~~~Gl~~~dv~~v~~~~~~~~al~~----G~vDa~~~~~p~~~~ 169 (342)
T 4esw_A 101 GITSDFQSLK--GKRIGYV-GEFGKIQVDELTKHYGMTPDDYVAVRCGMNVAKYILE----GTIDCGIGIECIQQV 169 (342)
T ss_dssp SCCSSGGGGT--TCEEEES-SSHHHHHHHHHHGGGTCCGGGSEEEECGGGHHHHHHH----TSSSEEEEETTTHHH
T ss_pred cccCCHHHhC--CCEEEec-CCchHHHHHHHHHHcCCChhheEEecCCHHHHHHHHc----CCCCEEEEeccchHH
Confidence 5677899998 9999985 443332222 3334443444333334456678888 899998876655443
No 182
>2zzv_A ABC transporter, solute-binding protein; periplasmic substrate binding protein, calcium, lactate, trap transporter, transport protein; 1.40A {Thermus thermophilus} PDB: 2zzw_A 2zzx_A
Probab=89.89 E-value=0.98 Score=47.90 Aligned_cols=59 Identities=15% Similarity=0.152 Sum_probs=43.3
Q ss_pred CCCCChHHhhcCCCCeeEEeCchHHHHHHhhhCCCccCcccCCCHHHHHHHhhcCCCCCceEEEEccHHHH
Q 003093 590 SPIKGIDSLRSSNYPIGYQVNSFARNYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYA 660 (848)
Q Consensus 590 ~~i~sl~dL~~s~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~ 660 (848)
.+|++++||. |++|.+. +......+ +.++. ..+++ ...|...+|++ |.+|+.....+..
T Consensus 164 ~pI~s~~DLk--G~kirv~-~~~~~~~~-~~lGa---~pv~~-~~~e~~~ALq~----G~VDg~~~~~~~~ 222 (361)
T 2zzv_A 164 KPIRRFEDFK--GVKLRVP-GGMIAEVF-AAAGA---STVLL-PGGEVYPALER----GVIDAADFVGPAV 222 (361)
T ss_dssp SCCCSGGGGT--TCEEECC-SHHHHHHH-HHTTC---EEECC-CGGGHHHHHHT----TSCSEEECSCHHH
T ss_pred CCcCChHHhC--CCEEeec-CHHHHHHH-HHcCC---eeeec-ChHHHHHHHHc----CCcceeecCCcch
Confidence 6899999998 9999887 55455555 34443 23333 56788999999 8999998776665
No 183
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=89.81 E-value=0.26 Score=50.49 Aligned_cols=61 Identities=13% Similarity=0.113 Sum_probs=51.5
Q ss_pred CCCCCCcchhhhhHHHHhhhcC--ccccccchhHHHHHHHHhhhhhhhccccceeeeeeeecc
Q 003093 527 GPPKRQVVTIFWFSFSTMFFAH--KEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQK 587 (848)
Q Consensus 527 ~~~~~~~~~~~~~~~~~l~~~~--~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~ 587 (848)
+....++..++||++.++...| .-.|.+..+|++.+++.++++++.+..++.+.+.++.+.
T Consensus 77 ~~~~~s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~~~~~ 139 (301)
T 1xl4_A 77 NARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTRPT 139 (301)
T ss_dssp TSCTTCHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred CCCcCCHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3445678999999999998664 458999999999999999999999999998888886543
No 184
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=89.65 E-value=0.17 Score=53.22 Aligned_cols=124 Identities=12% Similarity=0.048 Sum_probs=72.1
Q ss_pred CcchhhhhHHHHhhhcC--ccccccchhHHHHHHHHhhhhhhhccccceeeeeeeeccccCCCCChHHhhcCCCCeeEEe
Q 003093 532 QVVTIFWFSFSTMFFAH--KEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQV 609 (848)
Q Consensus 532 ~~~~~~~~~~~~l~~~~--~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~s~~~i~~~~ 609 (848)
++.+++||++.++...| .-.|.+..+|++.++|.++++++.+...+.+++.++.......... ....+ ..++.+..
T Consensus 45 ~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~viI~G 122 (336)
T 1lnq_A 45 SWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINREQMKLMGL-IDVAK-SRHVVICG 122 (336)
T ss_dssp CSSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC-------------------CEEEEES
T ss_pred CHHHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhcc-cCCEEEEC
Confidence 68899999999998665 4478999999999999999999999999999998887655432211 11111 22344433
Q ss_pred -CchHHHHHHhhhCCCccCcccCCCHHHHHHHhhcCCCCCceEEEEccHHHHHHHH
Q 003093 610 -NSFARNYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFL 664 (848)
Q Consensus 610 -~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~ 664 (848)
|....... +.+..... ++..+..++..+ +.. .+..++.++....+.+.
T Consensus 123 ~G~~g~~l~-~~L~~~g~-v~vid~~~~~~~-~~~----~~~~~i~gd~~~~~~L~ 171 (336)
T 1lnq_A 123 WSESTLECL-RELRGSEV-FVLAEDENVRKK-VLR----SGANFVHGDPTRVSDLE 171 (336)
T ss_dssp CCHHHHHHH-TTGGGSCE-EEEESCGGGHHH-HHH----TTCEEEESCTTSHHHHH
T ss_pred CcHHHHHHH-HHHHhCCc-EEEEeCChhhhh-HHh----CCcEEEEeCCCCHHHHH
Confidence 33333333 33322223 444555555556 554 45667776655444433
No 185
>2y7p_A LYSR-type regulatory protein; transcription regulator, DNA-binding, transcription, transcr factor, transcription regulation; HET: SAL PEU; 1.85A {Burkholderia SP} PDB: 2y7k_A* 2y84_A 2y7w_A 2y7r_A
Probab=89.55 E-value=3.8 Score=39.30 Aligned_cols=84 Identities=13% Similarity=0.128 Sum_probs=56.6
Q ss_pred CceEEEEecCCCCccceEEeCCCcceeeeeHHHHHHHHHhCCCCcceEEeeCCCCCCCCChhHHHHHHhcCeeeEEeece
Q 003093 375 GRHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDI 454 (848)
Q Consensus 375 g~~lrv~v~~~~~~~p~~~~~~~~~~~G~~~dll~~i~~~l~~~~~~~~~~~~~~~~n~s~~~~i~~l~~g~~D~~~~~~ 454 (848)
..+||||+.. . ....+-..++..+.++.+ .+++.... ++...++++|.+|++|++++..
T Consensus 7 ~g~l~Ig~~~---~----------~~~~~lp~~l~~f~~~~P-~v~l~l~~-------~~~~~l~~~L~~g~iDl~i~~~ 65 (218)
T 2y7p_A 7 TRTFNLAMTD---I----------GEMYFMPPLMEALAQRAP-HIQISTLR-------PNAGNLKEDMESGAVDLALGLL 65 (218)
T ss_dssp CCEEEEECCH---H----------HHHHHHHHHHHHHHHHCT-TCEEEEEC-------CCTTTHHHHHHHTSSCEEEECC
T ss_pred ceEEEEEecH---H----------HHHHHHHHHHHHHHHHCC-CCEEEEEe-------CCcccHHHHHhCCCceEEEecC
Confidence 3578888752 1 012456678888888775 34455543 4577899999999999998632
Q ss_pred eeecCceeeeeecccccccceEEEEeccC
Q 003093 455 AIITNRTKMADFTQPYIESGLVVVAPVRK 483 (848)
Q Consensus 455 ~~t~~R~~~~dfs~p~~~~~~~~v~~~~~ 483 (848)
.. ....+.+ .|.....+++++++..
T Consensus 66 ~~---~~~~l~~-~~l~~~~~~~v~~~~h 90 (218)
T 2y7p_A 66 PE---LQTGFFQ-RRLFRHRYVCMFRKDH 90 (218)
T ss_dssp TT---CCTTEEE-EEEEEECEEEEEETTC
T ss_pred CC---CCcceeE-EEeeeccEEEEEcCCC
Confidence 21 1223433 5788899999998766
No 186
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=89.19 E-value=0.38 Score=43.65 Aligned_cols=54 Identities=13% Similarity=0.277 Sum_probs=46.2
Q ss_pred CCcchhhhhHHHHhhhcC--ccccccchhHHHHHHHHhhhhhhhccccceeeeeee
Q 003093 531 RQVVTIFWFSFSTMFFAH--KEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILT 584 (848)
Q Consensus 531 ~~~~~~~~~~~~~l~~~~--~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt 584 (848)
.++.+++|+++.++...| .-.|.+..+|++.++|.++++.+.+...+++.+.+.
T Consensus 51 ~~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~ 106 (148)
T 3vou_A 51 LRPLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAVNVQ 106 (148)
T ss_dssp CCHHHHHHHHHHHHTTCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred CCHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378999999999998765 458999999999999999999999988888776553
No 187
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
Probab=89.10 E-value=2.2 Score=43.53 Aligned_cols=85 Identities=13% Similarity=0.089 Sum_probs=54.7
Q ss_pred ceEEEEecCCCCccceEEeCCCcceeeeeHHHHHHHHHhCCCCcceEEeeCCCCCCCCChhHHHHHHhcCeeeEEeecee
Q 003093 376 RHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDIA 455 (848)
Q Consensus 376 ~~lrv~v~~~~~~~p~~~~~~~~~~~G~~~dll~~i~~~l~~~~~~~~~~~~~~~~n~s~~~~i~~l~~g~~D~~~~~~~ 455 (848)
.+||||+... . ...+-..++..+.+..+ .+++.... +...+++..|.+|++|+++....
T Consensus 92 g~l~I~~~~~--~-----------~~~~l~~~l~~f~~~~P-~i~i~l~~-------~~~~~~~~~l~~g~~Dlai~~~~ 150 (305)
T 3fxq_A 92 GHITFAASPA--I-----------ALAALPLALASFAREFP-DVTVNVRD-------GMYPAVSPQLRDGTLDFALTAAH 150 (305)
T ss_dssp TEEEEEECHH--H-----------HHTHHHHHHHHHHHHCT-TCEEEEEE-------CCTTTTHHHHHHTSSSEEEEECC
T ss_pred ceEEEEechH--H-----------HHHHHHHHHHHHHHHCC-CCEEEEEE-------CCHHHHHHHHHcCCCCEEEecCC
Confidence 4688887631 1 12455677888888775 33455544 34678899999999999987332
Q ss_pred eecCceeeeeecccccccceEEEEeccC
Q 003093 456 IITNRTKMADFTQPYIESGLVVVAPVRK 483 (848)
Q Consensus 456 ~t~~R~~~~dfs~p~~~~~~~~v~~~~~ 483 (848)
.... ...+ -..|.....++++++...
T Consensus 151 ~~~~-~~~l-~~~~L~~~~~~~v~~~~h 176 (305)
T 3fxq_A 151 KHDI-DTDL-EAQPLYVSDVVIVGQRQH 176 (305)
T ss_dssp GGGS-CTTE-EEEEEEECCEEEEEETTC
T ss_pred CCCC-ccCe-eEEEeecCcEEEEEcCCC
Confidence 2210 1112 246778888999998765
No 188
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=89.08 E-value=2 Score=45.24 Aligned_cols=144 Identities=15% Similarity=0.016 Sum_probs=82.3
Q ss_pred CCCeEEEEccCCchhHHHHHHhhccC-CccEEecccCCCCCCCCCCCceEeccCChHHHHHHHHHHHHHcCcEEEEEEEE
Q 003093 2 EGQTVAIIGPQDAVTSHVVSHVANEL-QVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYV 80 (848)
Q Consensus 2 ~~~V~aiIGp~~S~~~~ava~i~~~~-~vP~Is~~at~p~ls~~~~p~f~r~~p~d~~q~~ai~~~~~~~~w~~vaii~~ 80 (848)
++++++||+.. .....++..++.++ ++|++-.....+ . ..-..++++.. ...+++-.+|.++.. -++|+.|..
T Consensus 84 ~~g~d~Ii~~g-~~~~~~~~~vA~~~Pdv~fv~id~~~~-~-~Nv~sv~~~~~-eg~ylaG~~A~~~tk--~~kIGfVgg 157 (356)
T 3s99_A 84 RAGNKLIFTTS-FGYMDPTVKVAKKFPDVKFEHATGYKT-A-DNMSAYNARFY-EGRYVQGVIAAKMSK--KGIAGYIGS 157 (356)
T ss_dssp HTTCSEEEECS-GGGHHHHHHHHTTCTTSEEEEESCCCC-B-TTEEEEEECHH-HHHHHHHHHHHHHCS--SCEEEEEEC
T ss_pred HCCCCEEEECC-HHHHHHHHHHHHHCCCCEEEEEecccc-C-CcEEEEEechh-HHHHHHHHHHHHhcC--CCEEEEECC
Confidence 35788888863 45667778888876 788876543211 0 11112333321 122233333334432 378999984
Q ss_pred cCC-CccchHHHHHHHHhccCcEEEEeeecCCC-CChHHHHHHHHHHhcCCCeEEEEEccCCcHHHHHHHHHHcCC
Q 003093 81 DDD-HGRNGIAALGDTLAAKRCRISFKAPLSVE-ATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGM 154 (848)
Q Consensus 81 dd~-~g~~~~~~l~~~l~~~g~~v~~~~~~~~~-~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~~~~~a~~~g~ 154 (848)
.+. ........|.+.++..+..+.....+... .+...-......+.+.++|+|+.+.... .++++|++.|.
T Consensus 158 ~~~p~v~~~~~GF~~G~k~~np~i~v~~~~~g~~~d~~kg~~~a~~l~~~G~DvIf~~~d~~---Gv~~aa~e~Gv 230 (356)
T 3s99_A 158 VPVPEVVQGINSFMLGAQSVNPDFRVKVIWVNSWFDPGKEADAAKALIDQGVDIITQHTDST---AAIQVAHDRGI 230 (356)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCTTCEEEEEECSSSCCHHHHHHHHHHHHHTTCSEEEESSSSS---HHHHHHHHTTC
T ss_pred CccHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCChHHHHHHHHHHHhCCCcEEEECCCch---HHHHHHHHcCC
Confidence 332 23345678888888876554333333322 1223334445566667899988877654 58899999874
No 189
>2fyi_A HTH-type transcriptional regulator CBL; Lys-R family, cofactor-binding DO cysteine biosynthesis; 2.80A {Escherichia coli K12} SCOP: c.94.1.1
Probab=88.91 E-value=6.7 Score=37.69 Aligned_cols=84 Identities=18% Similarity=0.201 Sum_probs=55.9
Q ss_pred ceEEEEecCCCCccceEEeCCCcceeeeeHHHHHHHHHhCCCCcceEEeeCCCCCCCCChhHHHHHHhcCeeeEEeecee
Q 003093 376 RHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDIA 455 (848)
Q Consensus 376 ~~lrv~v~~~~~~~p~~~~~~~~~~~G~~~dll~~i~~~l~~~~~~~~~~~~~~~~n~s~~~~i~~l~~g~~D~~~~~~~ 455 (848)
.+||||+... . ...+-.+++..+.++.+ .+++.... ++...++++|.+|++|+++....
T Consensus 14 g~lrIg~~~~--~-----------~~~~l~~~l~~f~~~~P-~v~l~l~~-------~~~~~~~~~l~~g~~Dl~i~~~~ 72 (228)
T 2fyi_A 14 GVLTIATTHT--Q-----------ARYSLPEVIKAFRELFP-EVRLELIQ-------GTPQEIATLLQNGEADIGIASER 72 (228)
T ss_dssp EEEEEEECHH--H-----------HHHTHHHHHHHHHHHCT-TEEEEEEE-------CCHHHHHHHHHHTSCSEEEESSS
T ss_pred ceEEEeeccc--h-----------HHHHHHHHHHHHHHHCC-CcEEEEEe-------CCHHHHHHHHHcCCccEEEEecc
Confidence 5789988631 1 12456678888888875 34555554 45789999999999999987322
Q ss_pred eecCceeeeeecccccccceEEEEeccC
Q 003093 456 IITNRTKMADFTQPYIESGLVVVAPVRK 483 (848)
Q Consensus 456 ~t~~R~~~~dfs~p~~~~~~~~v~~~~~ 483 (848)
.. ....+. ..+.....+++++++..
T Consensus 73 ~~--~~~~l~-~~~l~~~~~~~v~~~~h 97 (228)
T 2fyi_A 73 LS--NDPQLV-AFPWFRWHHSLLVPHDH 97 (228)
T ss_dssp ST--TCTTEE-EEEEEEECEEEEEETTC
T ss_pred cC--CCCCce-EEEeeecceEEEecCCC
Confidence 11 111222 35777888888888665
No 190
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=88.80 E-value=0.42 Score=54.31 Aligned_cols=122 Identities=14% Similarity=0.081 Sum_probs=72.1
Q ss_pred CCcchhhhhHHHHhhhcC--ccccccchhHHHHHHHHhhhhhhhccccce-eeeeeeecccc----CC-CCCh-HHhhcC
Q 003093 531 RQVVTIFWFSFSTMFFAH--KEKTVSALGRLVLIIWLFVVLIINSSYTAS-LTSILTVQKLS----SP-IKGI-DSLRSS 601 (848)
Q Consensus 531 ~~~~~~~~~~~~~l~~~~--~~~p~s~~~R~~~~~w~~~~lil~~~Yta~-L~s~Lt~~~~~----~~-i~sl-~dL~~s 601 (848)
.++..++||++.++...| .-.|.+..+|++.++|.++++.+.+...+. ++++++..... .. .... +.+
T Consensus 50 ~~~~~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 126 (565)
T 4gx0_A 50 YSFMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDIILPFGFVSMFLAPWIERRLRYHPTIELPDDT--- 126 (565)
T ss_dssp CCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTSCCCBCCCCTTC---
T ss_pred CchhhhhheeeeeeeeecCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccc---
Confidence 378999999999998665 447889999999999999998887776666 44444332211 11 1111 111
Q ss_pred CCCeeEEe-CchHHHHHHhhhCCCccCcccCCCHHHHHHHhhcCCCCC-ceEEEEccHHHH
Q 003093 602 NYPIGYQV-NSFARNYLVDELNIDESRLVPLNSPEEYAKALKDGPHKG-GVAAVVDDRAYA 660 (848)
Q Consensus 602 ~~~i~~~~-~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~a~~~~~~~~ 660 (848)
...+.+.. |.+..... +.+......++.++..++..+.+.. . ++.++.++...-
T Consensus 127 ~~hviI~G~g~~g~~la-~~L~~~~~~vvvid~~~~~~~~~~~----~~~~~~i~Gd~~~~ 182 (565)
T 4gx0_A 127 RGHILIFGIDPITRTLI-RKLESRNHLFVVVTDNYDQALHLEE----QEGFKVVYGSPTDA 182 (565)
T ss_dssp CSCEEEESCCHHHHHHH-HHTTTTTCCEEEEESCHHHHHHHHH----SCSSEEEESCTTCH
T ss_pred CCeEEEECCChHHHHHH-HHHHHCCCCEEEEECCHHHHHHHHH----hcCCeEEEeCCCCH
Confidence 22344443 33333333 3333333445555666666666665 4 566666665433
No 191
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=87.30 E-value=4.9 Score=40.49 Aligned_cols=83 Identities=11% Similarity=-0.007 Sum_probs=55.4
Q ss_pred ceEEEEecCCCCccceEEeCCCcceeeeeHHHHHHHHHhCCCCcceEEeeCCCCCCCCChhHHHHHHhcCeeeEEeecee
Q 003093 376 RHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDIA 455 (848)
Q Consensus 376 ~~lrv~v~~~~~~~p~~~~~~~~~~~G~~~dll~~i~~~l~~~~~~~~~~~~~~~~n~s~~~~i~~l~~g~~D~~~~~~~ 455 (848)
.+||||+... . ...+..+++..+.++.+ .+++.... ++...++.+|.+|++|+++....
T Consensus 91 g~l~Ig~~~~--~-----------~~~~l~~~l~~f~~~~P-~i~l~~~~-------~~~~~~~~~l~~g~~Dl~i~~~~ 149 (294)
T 1ixc_A 91 GELSVAYFGT--P-----------IYRSLPLLLRAFLTSTP-TATVSLTH-------MTKDEQVEGLLAGTIHVGFSRFF 149 (294)
T ss_dssp EEEEEEECSG--G-----------GGTHHHHHHHHHHHHCT-TEEEEEEE-------CCHHHHHHHHHHTSCSEEEESCC
T ss_pred ceEEEEEccc--h-----------hHHHHHHHHHHHHHHCC-CcEEEEEe-------CCHHHHHHHHHCCCccEEEEecC
Confidence 5789998731 1 12455678888888775 34455544 34678999999999999987433
Q ss_pred eecCceeeeeecccccccceEEEEeccC
Q 003093 456 IITNRTKMADFTQPYIESGLVVVAPVRK 483 (848)
Q Consensus 456 ~t~~R~~~~dfs~p~~~~~~~~v~~~~~ 483 (848)
... ..+. ..|.....+++++++..
T Consensus 150 ~~~---~~l~-~~~l~~~~~~~v~~~~~ 173 (294)
T 1ixc_A 150 PRH---PGIE-IVNIAQEDLYLAVHRSQ 173 (294)
T ss_dssp CCC---TTEE-EEEEEEEEEEEEEEGGG
T ss_pred CCC---CCce-EEEEeeccEEEEEeCCC
Confidence 221 2222 45777888899888665
No 192
>2pfz_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.80A {Bordetella pertussis tohama I}
Probab=87.19 E-value=2.8 Score=42.98 Aligned_cols=58 Identities=12% Similarity=0.193 Sum_probs=41.3
Q ss_pred CCCCChHHhhcCCCCeeEEeCchHHHHHHhhhCCCccCcccCCCHHHHHHHhhcCCCCCceEEEEccHHH
Q 003093 590 SPIKGIDSLRSSNYPIGYQVNSFARNYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAY 659 (848)
Q Consensus 590 ~~i~sl~dL~~s~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~ 659 (848)
.+|++++||. |++|.+. |+.....+ +.++. ..++. ...|...+|++ |.+|+.......
T Consensus 128 ~pI~s~~Dlk--G~KiR~~-~~~~~~~~-~~lGa---~pv~~-~~~E~y~ALq~----G~vDg~~~~~~~ 185 (301)
T 2pfz_A 128 RDIKQVSDMK--GLKWRAY-SPVTAKIA-ELVGA---QPVTV-QQAELAQAMAT----GVIDSYMSSGST 185 (301)
T ss_dssp SCCSSGGGGT--TCEEEES-SHHHHHHH-HHHTC---EEEEC-CGGGHHHHHHT----TSCSEEEECHHH
T ss_pred CCCCChHHhc--CCEEecC-ChhHHHHH-HHcCC---cceec-CHHHHHHHHhc----CeeeEEecCccc
Confidence 6899999998 9999886 65545555 34443 23333 67789999999 889998655433
No 193
>2pfy_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.95A {Bordetella pertussis tohama I}
Probab=87.04 E-value=2.8 Score=43.02 Aligned_cols=87 Identities=9% Similarity=0.020 Sum_probs=51.7
Q ss_pred CCCCChHHhhcCCCCeeEEeCchHHHHHHhhhCCCccCcccCCCHHHHHHHhhcCCCCCceEEEEccHHHHHHH-HhcCC
Q 003093 590 SPIKGIDSLRSSNYPIGYQVNSFARNYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELF-LSTRC 668 (848)
Q Consensus 590 ~~i~sl~dL~~s~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~-~~~~~ 668 (848)
.+|++++||. |++|.+. ++.....+ +.++. ..++. ...|...+|++ |.+|+.........-. +.+-.
T Consensus 129 ~pI~s~~Dlk--G~KiR~~-~~~~~~~~-~~lGa---~pv~~-~~~E~y~ALq~----G~vDg~~~~~~~~~~~~~~ev~ 196 (301)
T 2pfy_A 129 KPVAALADLK--GTRFRAY-SASTSHMA-ALMGA---VPTTV-QTPEVPQAFST----GVIDAMLTSPATGVDSQAWDYV 196 (301)
T ss_dssp SCCSSGGGGT--TCEEEEC-SHHHHHHH-HHTTS---EEEEC-CGGGHHHHHHT----TSCSBEEECHHHHHHTTGGGTC
T ss_pred CCCCCHHHhC--CCEEeec-ChhHHHHH-HHcCC---cceec-cHHHHHHHHhc----ceeeeEecCccccccccHHHHh
Confidence 6899999999 9999886 65555555 33442 23333 66788999999 8888886544333211 11223
Q ss_pred cEEEeCCccccCCceeeecCC
Q 003093 669 EFSIVGQVFTKNGWGFAFPRD 689 (848)
Q Consensus 669 ~l~~~~~~~~~~~~~~~~~k~ 689 (848)
++...... ......+.+.+.
T Consensus 197 k~~~~~~~-~~~~~~~~~n~~ 216 (301)
T 2pfy_A 197 KYYYDAQA-FIPQSFVIANKR 216 (301)
T ss_dssp CEEEECCC-CCCEEEEEEEHH
T ss_pred hhhccccc-ccceeeEEEcHH
Confidence 44443332 223345566654
No 194
>1al3_A Cys regulon transcriptional activator CYSB; LYSR family, cysteine biosynthesis, transcription regulation; 1.80A {Klebsiella aerogenes} SCOP: c.94.1.1
Probab=86.95 E-value=10 Score=38.90 Aligned_cols=206 Identities=13% Similarity=0.114 Sum_probs=119.7
Q ss_pred ceEEEEecCCCCccceEEeCCCcceeeeeHHHHHHHHHhCCCCcceEEeeCCCCCCCCChhHHHHHHhcCeeeEEeecee
Q 003093 376 RHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDIA 455 (848)
Q Consensus 376 ~~lrv~v~~~~~~~p~~~~~~~~~~~G~~~dll~~i~~~l~~~~~~~~~~~~~~~~n~s~~~~i~~l~~g~~D~~~~~~~ 455 (848)
.+||||+... . ...+-..++..+.+..+ .+++.... ++...++.+|.+|++|+++....
T Consensus 93 g~l~I~~~~~--~-----------~~~~l~~~l~~f~~~~P-~v~i~l~~-------~~~~~~~~~l~~g~~Dlai~~~~ 151 (324)
T 1al3_A 93 GSLYVATTHT--Q-----------ARYALPGVIKGFIERYP-RVSLHMHQ-------GSPTQIAEAVSKGNADFAIATEA 151 (324)
T ss_dssp EEEEEEECHH--H-----------HHHTSHHHHHHHHHHCT-EEEEEEEE-------CCHHHHHHHHHTTCCSEEEESSC
T ss_pred CeEEEEechh--h-----------hhhHHHHHHHHHHHHCC-CCEEEEEE-------CCHHHHHHHHHCCCceEEEEecC
Confidence 5789988631 1 12455678888888875 33455544 45788999999999999987422
Q ss_pred eecCceeeeeecccccccceEEEEeccCCCCCcccccccCchhhHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCcch
Q 003093 456 IITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKRQVVT 535 (848)
Q Consensus 456 ~t~~R~~~~dfs~p~~~~~~~~v~~~~~~~~~~~~fl~PF~~~vW~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 535 (848)
... ...+. ..|.....++++++...+..
T Consensus 152 ~~~--~~~l~-~~~L~~~~~~~v~~~~~pl~------------------------------------------------- 179 (324)
T 1al3_A 152 LHL--YDDLV-MLPCYHWNRSIVVTPEHPLA------------------------------------------------- 179 (324)
T ss_dssp CCT--TSCEE-EEEEEEECEEEEECTTSTTT-------------------------------------------------
T ss_pred CCC--CCCee-EEEecCCceEEEEcCCCccc-------------------------------------------------
Confidence 211 11222 35677778888887655210
Q ss_pred hhhhHHHHhhhcCccccccchhHHHHHHHHhhhhhhhccccceeeeeeeeccccCCCCChHHhhcCCCCee-EEeCchH-
Q 003093 536 IFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIG-YQVNSFA- 613 (848)
Q Consensus 536 ~~~~~~~~l~~~~~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~s~~~i~-~~~~s~~- 613 (848)
....-+++||. +.++. ...++..
T Consensus 180 -----------------------------------------------------~~~~~~~~dL~--~~~~i~~~~~~~~~ 204 (324)
T 1al3_A 180 -----------------------------------------------------TKGSVSIEELA--QYPLVTYTFGFTGR 204 (324)
T ss_dssp -----------------------------------------------------TTSCCCHHHHH--TSEEEEECTTSTTH
T ss_pred -----------------------------------------------------cCCCCCHHHHh--CCCeEEecCCCcHH
Confidence 02334688998 55543 3333322
Q ss_pred ---HHHHHhhhCCCccCcccCCCHHHHHHHhhcCCCCCceEEEEccHHHHHHHHhcCCcEEEeC--CccccCCceeeecC
Q 003093 614 ---RNYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRCEFSIVG--QVFTKNGWGFAFPR 688 (848)
Q Consensus 614 ---~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~k 688 (848)
..++. ..+........+++.+...+++.. |...+++-.... .... ..++..+. .......++++.++
T Consensus 205 ~~~~~~~~-~~g~~~~~~~~~~~~~~~~~lv~~----G~Giailp~~~~-~~~~--~~~L~~~~~~~~~~~~~~~l~~~~ 276 (324)
T 1al3_A 205 SELDTAFN-RAGLTPRIVFTATDADVIKTYVRL----GLGVGVIASMAV-DPVS--DPDLVKLDANGIFSHSTTKIGFRR 276 (324)
T ss_dssp HHHHHHHH-HHTCCCEEEEEESSHHHHHHHHHH----TSCEEEEEGGGC-CTTT--CTTSEEEECBTTBCCEEEEEEEET
T ss_pred HHHHHHHH-HcCCCCceEEEeCCHHHHHHHHHh----CCCeEEechhhh-hhhc--cCCeEEEECCCCCcceEEEEEEeC
Confidence 23332 233332334567888899999998 555566654322 1111 23455443 23334567888888
Q ss_pred CCCchHHHHHHHHhhhccCchHHHHHhhcc
Q 003093 689 DSPLAVDISTAILKLSENGDLQRIHDKWLL 718 (848)
Q Consensus 689 ~spl~~~in~~i~~l~e~G~~~~~~~kw~~ 718 (848)
+.+....+...+..+.+. .-+.+.++++.
T Consensus 277 ~~~~~~~~~~fi~~l~~~-~~~~~~~~~~~ 305 (324)
T 1al3_A 277 STFLRSYMYDFIQRFAPH-LTRDVVDTAVA 305 (324)
T ss_dssp TCCCCHHHHHHHHHHCTT-CCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH-hccchhhhhhh
Confidence 887777777766666654 33455555544
No 195
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=86.71 E-value=0.49 Score=46.34 Aligned_cols=74 Identities=11% Similarity=0.212 Sum_probs=56.3
Q ss_pred HHHHHHHhhhhhcccCCCCCCCCCCCcchhhhhHHHHhhhcC--ccccccchhHHHHHHHHhhhhhhhccccceeeeeee
Q 003093 507 FLAVGAVVWILEHRLNDEFRGPPKRQVVTIFWFSFSTMFFAH--KEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILT 584 (848)
Q Consensus 507 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt 584 (848)
+++.+.+++.+|+.. .++...++.+++|+++.++..-| .-.|.+..+|++.+++.++++.+.+...+.+++.++
T Consensus 144 ~~~~~~~~~~~e~~~----~~~~~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~~i~~i~~~~~ 219 (223)
T 1orq_C 144 VLYGAFAIYIVEYPD----PNSSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNMFQ 219 (223)
T ss_dssp HHHHHHHHHHTTSSS----TTCSCCSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC----cCCCcCcchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566666532 22344689999999999998665 458999999999999999999999998888877664
No 196
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=86.42 E-value=3.4 Score=42.32 Aligned_cols=143 Identities=11% Similarity=0.119 Sum_probs=84.2
Q ss_pred CCCeEEEEccCCchhHHHHHHhhccCCccEEecccCCCCCCC----CC--CCceEeccCChHHHHHHHHHHHHHc--CcE
Q 003093 2 EGQTVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSS----LQ--FPYFVRTTQSDQYQMAAIAEIVDHY--GWR 73 (848)
Q Consensus 2 ~~~V~aiIGp~~S~~~~ava~i~~~~~vP~Is~~at~p~ls~----~~--~p~f~r~~p~d~~q~~ai~~~~~~~--~w~ 73 (848)
++++++||+ ..+..+.+++.. ..++|+|-.+.++|.-.. .. -+++.-+.- ..-.....+++++. +.+
T Consensus 67 ~~~~DlIia-i~t~aa~a~~~~--~~~iPVVf~~v~dp~~~~l~~~~~~~g~nvtGv~~--~~~~~~~l~l~~~l~P~~k 141 (302)
T 3lkv_A 67 GENPDVLVG-IATPTAQALVSA--TKTIPIVFTAVTDPVGAKLVKQLEQPGKNVTGLSD--LSPVEQHVELIKEILPNVK 141 (302)
T ss_dssp TTCCSEEEE-ESHHHHHHHHHH--CSSSCEEEEEESCTTTTTSCSCSSSCCSSEEEEEC--CCCHHHHHHHHHHHSTTCC
T ss_pred hcCCcEEEE-cCCHHHHHHHhh--cCCCCeEEEecCCcchhhhcccccCCCCcEEEEEC--CcCHHHHHHHHHHhCCCCC
Confidence 467888886 344455555543 457999877777765332 11 134443321 11133444555443 789
Q ss_pred EEEEEEEcCCC-ccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccCC---cHHHHHHHH
Q 003093 74 EVIAIYVDDDH-GRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYN---RGPVVFHVA 149 (848)
Q Consensus 74 ~vaii~~dd~~-g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~---~~~~~~~~a 149 (848)
+|+++|...+- .....+.+++.+++.|++++..... +..++...+..+. .+.+++++..+.. ....+...+
T Consensus 142 ~vgvi~~~~~~~s~~~~~~~~~~~~~~g~~~v~~~~~----~~~~~~~~~~~l~-~~~d~i~~~~d~~~~~~~~~i~~~~ 216 (302)
T 3lkv_A 142 SIGVVYNPGEANAVSLMELLKLSAAKHGIKLVEATAL----KSADVQSATQAIA-EKSDVIYALIDNTVASAIEGMIVAA 216 (302)
T ss_dssp EEEEEECTTCHHHHHHHHHHHHHHHHTTCEEEEEECS----SGGGHHHHHHHHH-TTCSEEEECSCHHHHHTHHHHHHHH
T ss_pred EEEEEeCCCcccHHHHHHHHHHHHHHcCCEEEEEecC----ChHHHHHHHHhcc-CCeeEEEEeCCcchhhHHHHHHHHH
Confidence 99999966543 3455678888999999998755332 2356666666665 4688888765432 122234445
Q ss_pred HHcCC
Q 003093 150 QYLGM 154 (848)
Q Consensus 150 ~~~g~ 154 (848)
.+.+.
T Consensus 217 ~~~~i 221 (302)
T 3lkv_A 217 NQAKT 221 (302)
T ss_dssp HHTTC
T ss_pred hhcCC
Confidence 55443
No 197
>1atg_A MODA, periplasmic molybdate-binding protein; tungstate, ABC transporter; 1.20A {Azotobacter vinelandii} SCOP: c.94.1.1
Probab=86.02 E-value=1.6 Score=42.28 Aligned_cols=71 Identities=14% Similarity=-0.006 Sum_probs=44.8
Q ss_pred eHHHHHHHHHhCCCCcceEEeeCCCCCCCCChhHHHHHHhcCe-eeEEeeceeeecC---ceeeee--ecccccccceEE
Q 003093 404 CIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGV-YDAAVGDIAIITN---RTKMAD--FTQPYIESGLVV 477 (848)
Q Consensus 404 ~~dll~~i~~~l~~~~~~~~~~~~~~~~n~s~~~~i~~l~~g~-~D~~~~~~~~t~~---R~~~~d--fs~p~~~~~~~~ 477 (848)
.-++++.+.++-|.++++.. ++-..++.+|.+|+ +|+++..-....+ ....+. -..|+....+++
T Consensus 14 l~~~~~~F~~~p~i~v~~~~---------~~s~~l~~~l~~g~~~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl 84 (231)
T 1atg_A 14 LEQLAGQFAKQTGHAVVISS---------GSSGPVYAQIVNGAPYNVFFSADEKSPEKLDNQGFALPGSRFTYAIGKLVL 84 (231)
T ss_dssp HHHHHHHHHHHHCCCEEEEE---------ECHHHHHHHHHTTCCCSEEECSSSHHHHHHHHTTCBCTTCCEEEEECCEEE
T ss_pred HHHHHHHHHhccCCeEEEEE---------CCcHHHHHHHHcCCCCCEEEeCChhHHHHHHhcCCCcCCceeEeeeeeEEE
Confidence 34567777777677755543 34678999999998 9998763211111 111111 246788888888
Q ss_pred EEeccC
Q 003093 478 VAPVRK 483 (848)
Q Consensus 478 v~~~~~ 483 (848)
++++..
T Consensus 85 v~~~~~ 90 (231)
T 1atg_A 85 WSAKPG 90 (231)
T ss_dssp EESSTT
T ss_pred EEcCCC
Confidence 888665
No 198
>2dgd_A 223AA long hypothetical arylmalonate decarboxylas; octamer, alpha/beta structure, lyase; 2.90A {Sulfolobus tokodaii}
Probab=85.65 E-value=4.9 Score=39.05 Aligned_cols=92 Identities=10% Similarity=-0.066 Sum_probs=62.5
Q ss_pred HHHHHHHHHHcCcEEEEEEEEcCCCccchHHHHHHHHhccCcEEEEeeecCCC-------CChHHHHHHHHHHhcC--CC
Q 003093 60 MAAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVE-------ATEDEITDLLVKVALT--ES 130 (848)
Q Consensus 60 ~~ai~~~~~~~~w~~vaii~~dd~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~-------~~~~d~~~~l~~i~~~--~~ 130 (848)
..++++.++..|-++|+++. .|+....+.+.+.+++.|+++......... .+...+...++++... ++
T Consensus 96 ~~a~~~a~~~~g~~rvgvlt---~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ga 172 (223)
T 2dgd_A 96 EESVYELLKKLNVRKLWIGT---PYIKERTLEEVEWWRNKGFEIVGYDGLGKIRGIDISNTPIFTIYRLVKRHLNEVLKA 172 (223)
T ss_dssp HHHHHHHHHHTTCCEEEEEE---SSCHHHHHHHHHHHHTTTCEEEEEEECCCCSHHHHHTCCHHHHHHHHHTTHHHHTTS
T ss_pred HHHHHHHHHHcCCCeEEEEe---CCchHHHHHHHHHHHhCCcEEecccCCCCCCcchhhccCHHHHHHHHHHHhcccCCC
Confidence 67777777778889999995 566666778888999999998655443332 1335566777777666 89
Q ss_pred eEEEEEccCCcHHHHHHHHH-HcCC
Q 003093 131 RIIVVHTHYNRGPVVFHVAQ-YLGM 154 (848)
Q Consensus 131 ~viv~~~~~~~~~~~~~~a~-~~g~ 154 (848)
|+||+.|..-....+..+.. .+|.
T Consensus 173 daIvLgCT~l~~~~~~~~l~~~~g~ 197 (223)
T 2dgd_A 173 DAVYIACTALSTYEAVQYLHEDLDM 197 (223)
T ss_dssp SEEEECCTTSCCTTHHHHHHHHHTS
T ss_pred CEEEEeCCcccHHHHHHHHHHHhCC
Confidence 99999876544333344332 3454
No 199
>3r26_A Molybdate-binding periplasmic protein; protein binding; 1.70A {Escherichia coli} SCOP: c.94.1.1 PDB: 3axf_A 1amf_A 1wod_A
Probab=85.64 E-value=5.6 Score=38.98 Aligned_cols=70 Identities=27% Similarity=0.231 Sum_probs=45.0
Q ss_pred HHHHHHHHHhCCCCcceEEeeCCCCCCCCChhHHHHHHhcCe-eeEEeeceeeecC---ceeeee--ecccccccceEEE
Q 003093 405 IDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGV-YDAAVGDIAIITN---RTKMAD--FTQPYIESGLVVV 478 (848)
Q Consensus 405 ~dll~~i~~~l~~~~~~~~~~~~~~~~n~s~~~~i~~l~~g~-~D~~~~~~~~t~~---R~~~~d--fs~p~~~~~~~~v 478 (848)
-+|.+.+.++-|.++++.+ ++-..++.++.+|. +|++++.-.-..+ ....+. ...+|....++++
T Consensus 22 ~~l~~~Fe~~~gi~V~~~~---------~~s~~l~~~i~~g~~~Dv~~~a~~~~~~~l~~~g~~~~~~~~~~~~~~lvl~ 92 (237)
T 3r26_A 22 QDIATQFKKEKGVDVVSSF---------ASSSTLARQIEAGAPADLFISADQKWMDYAVDKKAIDTATRQTLLGNSLVVV 92 (237)
T ss_dssp HHHHHHHHHHHCCEEEEEE---------ECHHHHHHHHHHTCCCSEEECSSHHHHHHHHHTTCBCGGGCEEEEEECEEEE
T ss_pred HHHHHHHHhccCCeEEEEE---------CCHHHHHHHHHcCCCceEEEECCHHHHHHHHHCCCCCCCceeeeEcceEEEE
Confidence 4677777777788766554 33567888888887 9999873211111 111221 2347778889999
Q ss_pred EeccC
Q 003093 479 APVRK 483 (848)
Q Consensus 479 ~~~~~ 483 (848)
+++..
T Consensus 93 ~~~~~ 97 (237)
T 3r26_A 93 APKAS 97 (237)
T ss_dssp EESSC
T ss_pred EeCCC
Confidence 98765
No 200
>2i49_A Bicarbonate transporter; alpha-beta protein, C-clamp, ABC transporter, periplasmic SO binding protein, bicarbonate-binding protein; 1.35A {Synechocystis SP} PDB: 2i48_A 2i4b_A 2i4c_A
Probab=85.60 E-value=1.9 Score=46.80 Aligned_cols=106 Identities=14% Similarity=0.211 Sum_probs=61.6
Q ss_pred hHHh-hcCCC--CeeEE-eCchHHHHHH---hhhCCCc---cCcccCCCHHHHHHHhhcCCCCCceEEEEccHHHHHHHH
Q 003093 595 IDSL-RSSNY--PIGYQ-VNSFARNYLV---DELNIDE---SRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFL 664 (848)
Q Consensus 595 l~dL-~~s~~--~i~~~-~~s~~~~~l~---~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~ 664 (848)
++|| .+.|+ +||+. .++....++. ...+... .+++.+ ...+...+|.+ |.+||++...++.....
T Consensus 153 i~dL~k~~GK~~~Iav~~~gs~~~~~l~~~L~~~Gl~p~~DV~~v~~-~~~~~~~aL~~----G~iDa~~~~eP~~~~a~ 227 (429)
T 2i49_A 153 IKGFNKTNGRKFKAAHTFPNVNQDFWIRYWFAAGGVDPDTDIDLLAV-PPAETVQGMRN----GTMDAFSTGDPWPYRIV 227 (429)
T ss_dssp HHTHHHHHSSCCEEEESSTTSHHHHHHHHHHHHTTCCTTTTSEEEEC-CHHHHHHHHHH----TCCCEEEEETTHHHHHH
T ss_pred HHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCCCCCcEEEEEC-ChHHHHHHHHc----CCccEEEeccchHHHHH
Confidence 6888 64466 89997 5765433322 2334432 345555 67888999999 89999998888876666
Q ss_pred hcCCcEEEe--CCccccCC-ceeeecCC----CC-----chHHHHHHHHhhhc
Q 003093 665 STRCEFSIV--GQVFTKNG-WGFAFPRD----SP-----LAVDISTAILKLSE 705 (848)
Q Consensus 665 ~~~~~l~~~--~~~~~~~~-~~~~~~k~----sp-----l~~~in~~i~~l~e 705 (848)
.+.....+. ++.....+ ..++++++ .| +...+.++..++.+
T Consensus 228 ~~g~g~~~~~~~~~~~~~~~~vl~~~~~~~~~~Pe~v~~~~~A~~~A~~~~~~ 280 (429)
T 2i49_A 228 TENIGYMAGLTAQIWPYHPEEYLAIRADWVDKNPKATKALLKGIMEAQQWIDD 280 (429)
T ss_dssp HTTSCEEEEEHHHHSTTCCCCEEEEEHHHHHHCHHHHHHHHHHHHHHHHHHTS
T ss_pred HCCCCEEEEechHhcCCCceEEEEECHHHHHHCHHHHHHHHHHHHHHHHHHhC
Confidence 554332222 22222222 45666654 34 44455555555654
No 201
>2de3_A Dibenzothiophene desulfurization enzyme B; alpha-beta, hydrolase; HET: OBP; 1.60A {Rhodococcus SP} PDB: 2de4_A* 2de2_A
Probab=85.28 E-value=1.6 Score=46.29 Aligned_cols=76 Identities=18% Similarity=0.101 Sum_probs=42.6
Q ss_pred HHHHhhcCCCCCceEEEEccHHHHHHHHhcCCcEEEeCCcc---cc-CCceeeecC----CCC-chHH----HHHHHHhh
Q 003093 637 YAKALKDGPHKGGVAAVVDDRAYAELFLSTRCEFSIVGQVF---TK-NGWGFAFPR----DSP-LAVD----ISTAILKL 703 (848)
Q Consensus 637 ~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~---~~-~~~~~~~~k----~sp-l~~~----in~~i~~l 703 (848)
...+|.+ |++||++...++....... ..+++-+.- .. ....+++++ ..| .... +.++...+
T Consensus 210 ~~~aL~~----G~vDA~~~~~p~~~~~~~~--g~~~l~~~~~~~~~~~~~~l~~~~~~~~~~p~~v~~~~~a~~~a~~~~ 283 (365)
T 2de3_A 210 QAAVLAS----GDVDALYSWLPWAGELQAT--GARPVVDLGLDERNAYASVWTVSSGLVRQRPGLVQRLVDAAVDAGLWA 283 (365)
T ss_dssp HHHHHHS----SSCSEEEEEHHHHHHHHHT--TEEESSCGGGSGGGCEEEEEEEEHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhC----CCcCEEEEcchhHHHHHhC--CCEEEEeCcccCCCCceEEEEEcHHHHHHCHHHHHHHHHHHHHHHHHH
Confidence 6788988 8999999888776655442 355554321 11 123455553 344 4444 55555556
Q ss_pred hccC-chHHHHHhhcc
Q 003093 704 SENG-DLQRIHDKWLL 718 (848)
Q Consensus 704 ~e~G-~~~~~~~kw~~ 718 (848)
.++. ...++..+++.
T Consensus 284 ~~~p~~~~~i~~~~~~ 299 (365)
T 2de3_A 284 RDHSDAVTSLHAANLG 299 (365)
T ss_dssp TTCHHHHHHHHHHHHT
T ss_pred HHCHHHHHHHHHHHhC
Confidence 5552 34455555543
No 202
>2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional activator, LYSR-type transcripti regulator; 1.80A {Acinetobacter SP} PDB: 2h99_A 3k1m_A 3k1n_A 3k1p_A 2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A*
Probab=84.47 E-value=14 Score=37.60 Aligned_cols=82 Identities=16% Similarity=0.182 Sum_probs=54.5
Q ss_pred eEEEEecCCCCccceEEeCCCcceeeeeHHHHHHHHHhCCCCcceEEeeCCCCCCCCChhHHHHHHhcCeeeEEeeceee
Q 003093 377 HLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDIAI 456 (848)
Q Consensus 377 ~lrv~v~~~~~~~p~~~~~~~~~~~G~~~dll~~i~~~l~~~~~~~~~~~~~~~~n~s~~~~i~~l~~g~~D~~~~~~~~ 456 (848)
+||||+... . ...+-.+++..+.+..+ .+++.... ++...++.+|.+|++|+++.....
T Consensus 91 ~l~Ig~~~~--~-----------~~~~l~~~l~~f~~~~P-~v~i~l~~-------~~~~~~~~~l~~g~~Dlai~~~~~ 149 (312)
T 2h9b_A 91 TIRIGFVGS--L-----------LFGLLPRIIHLYRQAHP-NLRIELYE-------MGTKAQTEALKEGRIDAGFGRLKI 149 (312)
T ss_dssp EEEEEECGG--G-----------GGTTHHHHHHHHHHTCT-TCEEEEEE-------CCHHHHHHHHHTTSCSEEEESSCC
T ss_pred eEEEEechh--h-----------hHhhHHHHHHHHHHHCC-CcEEEEEe-------CCHHHHHHHHHcCCCCEEEEeCCC
Confidence 789988631 1 12455678888887764 33455544 457889999999999999874332
Q ss_pred ecCceeeeeecccccccceEEEEeccC
Q 003093 457 ITNRTKMADFTQPYIESGLVVVAPVRK 483 (848)
Q Consensus 457 t~~R~~~~dfs~p~~~~~~~~v~~~~~ 483 (848)
... .+ -..|.....++++++...
T Consensus 150 ~~~---~l-~~~~L~~~~~~~v~~~~h 172 (312)
T 2h9b_A 150 SDP---AI-KHSLLRNERLMVAVHASH 172 (312)
T ss_dssp CCT---TE-EEEEEEEEEEEEEEETTS
T ss_pred CCC---Cc-eEEEeecceEEEEEcCCC
Confidence 211 12 245777888888888654
No 203
>3gzg_A Molybdate-binding periplasmic protein; permease; molybdate complex, mutant K127S, metal binding protein; 1.55A {Xanthomonas axonopodis PV} PDB: 2h5y_A
Probab=84.43 E-value=6.3 Score=39.14 Aligned_cols=70 Identities=19% Similarity=0.141 Sum_probs=44.4
Q ss_pred HHHHHHHHHhCCCCcceEEeeCCCCCCCCChhHHHHHHhcCe-eeEEeeceeeecC---ceeeee--ecccccccceEEE
Q 003093 405 IDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGV-YDAAVGDIAIITN---RTKMAD--FTQPYIESGLVVV 478 (848)
Q Consensus 405 ~dll~~i~~~l~~~~~~~~~~~~~~~~n~s~~~~i~~l~~g~-~D~~~~~~~~t~~---R~~~~d--fs~p~~~~~~~~v 478 (848)
-+|.+.+.++.|.++++.+ ++-..++.+|.+|. +|+.++.-.-..+ ....++ -..+|....++++
T Consensus 38 ~~l~~~Fe~~~gi~V~~~~---------~~Sg~l~~qi~~g~~~DV~~sa~~~~~~~l~~~gl~~~~~~~~~a~~~lvl~ 108 (253)
T 3gzg_A 38 DEAATAYEKATGTPVRVSY---------AASSALARQIEQGAPADVFLSADLEWMDYLQQHGLVLPAQRHNLLGNTLVLV 108 (253)
T ss_dssp HHHHHHHHHHHSCCEEEEE---------ECHHHHHHHHHTTCCCSEEECSSHHHHHHHHHTTSSCGGGEEEEEEECEEEE
T ss_pred HHHHHHHHHHhCCeEEEEE---------CChHHHHHHHHcCCCceEEEECCHHHHHHHHHCCCcCCCcceeEEeeEEEEE
Confidence 4677777777788866654 34667888898887 9999874211111 111121 1246677788999
Q ss_pred EeccC
Q 003093 479 APVRK 483 (848)
Q Consensus 479 ~~~~~ 483 (848)
+++..
T Consensus 109 ~~~~~ 113 (253)
T 3gzg_A 109 APASS 113 (253)
T ss_dssp EETTC
T ss_pred EECCC
Confidence 98765
No 204
>2h98_A HTH-type transcriptional regulator CATM; BENM, LTTR; 1.80A {Acinetobacter SP} PDB: 2h9q_A* 2f7b_A 2f7c_A* 3glb_A* 3m1e_A
Probab=84.36 E-value=20 Score=36.54 Aligned_cols=82 Identities=16% Similarity=0.190 Sum_probs=54.3
Q ss_pred eEEEEecCCCCccceEEeCCCcceeeeeHHHHHHHHHhCCCCcceEEeeCCCCCCCCChhHHHHHHhcCeeeEEeeceee
Q 003093 377 HLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDIAI 456 (848)
Q Consensus 377 ~lrv~v~~~~~~~p~~~~~~~~~~~G~~~dll~~i~~~l~~~~~~~~~~~~~~~~n~s~~~~i~~l~~g~~D~~~~~~~~ 456 (848)
+||||+... . ...+-.+++..+.+..+ .+++.... ++...++.+|.+|++|+++.....
T Consensus 91 ~l~Ig~~~~--~-----------~~~~l~~~l~~f~~~~P-~v~l~l~~-------~~~~~~~~~l~~g~~Dlai~~~~~ 149 (313)
T 2h98_A 91 TLRIGYVSS--L-----------LYGLLPEIIYLFRQQNP-EIHIELIE-------CGTKDQINALKQGKIDLGFGRLKI 149 (313)
T ss_dssp EEEEEECGG--G-----------GGTTHHHHHHHHHHHCT-TSEEEEEE-------CCHHHHHHHHHHTSCSEEEESSCC
T ss_pred EEEEEechH--h-----------HHhHHHHHHHHHHHHCC-CeEEEEEe-------CChHHHHHHHHcCCCCEEEEeCCC
Confidence 789988631 1 12456678888888774 23355543 457889999999999999874322
Q ss_pred ecCceeeeeecccccccceEEEEeccC
Q 003093 457 ITNRTKMADFTQPYIESGLVVVAPVRK 483 (848)
Q Consensus 457 t~~R~~~~dfs~p~~~~~~~~v~~~~~ 483 (848)
.. ..+ -..|.....++++++...
T Consensus 150 ~~---~~l-~~~~L~~~~~~~v~~~~h 172 (313)
T 2h98_A 150 TD---PAI-RRIMLHKEQLKLAIHKHH 172 (313)
T ss_dssp CC---TTE-EEEEEEEEEEEEEEETTS
T ss_pred CC---CCe-eEEEeeeCcEEEEEcCCC
Confidence 21 112 245777888888888654
No 205
>2xed_A Putative maleate isomerase; nicotinic acid catabolism, cofactor-independent CIS-trans isomerase; 1.95A {Nocardia farcinica} PDB: 2xec_A
Probab=84.35 E-value=6 Score=39.81 Aligned_cols=92 Identities=16% Similarity=0.105 Sum_probs=62.0
Q ss_pred HHHHHHHHHHcCcEEEEEEEEcCCCccchHHHHHHHHhccCcEEEEeeecCCC-------CChHHHHHHHHHHhcCCCeE
Q 003093 60 MAAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVE-------ATEDEITDLLVKVALTESRI 132 (848)
Q Consensus 60 ~~ai~~~~~~~~w~~vaii~~dd~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~-------~~~~d~~~~l~~i~~~~~~v 132 (848)
+.++++.++..|-++|+++. .|.....+.+.+.+++.|+++......... .+...+...++++...++|+
T Consensus 134 ~~A~~~al~~~g~~rvgvlt---p~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~g~~~~~~l~~~~~~l~~~gada 210 (273)
T 2xed_A 134 AGALVEGLRALDAQRVALVT---PYMRPLAEKVVAYLEAEGFTISDWRALEVADNTEVGCIPGEQVMAAARSLDLSEVDA 210 (273)
T ss_dssp HHHHHHHHHHTTCCEEEEEE---CSCHHHHHHHHHHHHHTTCEEEEEEECCCCBHHHHHTCCHHHHHHHHHHSCCTTCSE
T ss_pred HHHHHHHHHHcCCCeEEEEc---CChhhhHHHHHHHHHHCCCEEeccccCCCccchhhcccCHHHHHHHHHHHhhCCCCE
Confidence 35555566777889999996 566666778889999999998665443321 13456777778887778999
Q ss_pred EEEE-ccCCcHHHHHHHHH-HcCC
Q 003093 133 IVVH-THYNRGPVVFHVAQ-YLGM 154 (848)
Q Consensus 133 iv~~-~~~~~~~~~~~~a~-~~g~ 154 (848)
||+. |..-....+..+.. ++|.
T Consensus 211 IvLg~CT~l~~~~~~~~le~~lg~ 234 (273)
T 2xed_A 211 LVISCAVQMPSLPLVETAEREFGI 234 (273)
T ss_dssp EEEESSSSSCCTTHHHHHHHHHSS
T ss_pred EEEcCCCCcchHHhHHHHHHHhCC
Confidence 9998 76544333333332 3454
No 206
>1uth_A LYSR-type regulatory protein; transcription regulation, transcriptional regulator; 2.2A {Burkholderia SP} SCOP: c.94.1.1 PDB: 1utb_A 1utb_B 1uth_B 2uyf_A 2uye_A
Probab=83.76 E-value=6.9 Score=40.05 Aligned_cols=83 Identities=14% Similarity=0.221 Sum_probs=52.7
Q ss_pred ceEEEEecCCCCccceEEeCCCcceeeeeHHHHHHHHHhCCCCcceEEeeCCCCCCCCChhHHHHHHhcCeeeEEeecee
Q 003093 376 RHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDIA 455 (848)
Q Consensus 376 ~~lrv~v~~~~~~~p~~~~~~~~~~~G~~~dll~~i~~~l~~~~~~~~~~~~~~~~n~s~~~~i~~l~~g~~D~~~~~~~ 455 (848)
..||||+.. .. ...+-..++..+.+..+ .+.+.... ++...++.+|.+|++|+++....
T Consensus 105 ~~l~Ig~~~---~~----------~~~~l~~~l~~f~~~~P-~v~l~l~~-------~~~~~~~~~l~~g~~Dl~i~~~~ 163 (315)
T 1uth_A 105 RTFNLAMTD---IG----------EMYFMPPLMEALAQRAP-HIQISTLR-------PNAGNLKEDMESGAVDLALGLLP 163 (315)
T ss_dssp CEEEEECCH---HH----------HHHHHHHHHHHHHHHCT-TCEEEEEC-------TTSSCHHHHHHHTSCCEEEECCT
T ss_pred eEEEEEech---HH----------HHHHHHHHHHHHHHHCC-CcEEEEEe-------CCcccHHHHHHCCCCCEEEecCC
Confidence 578998752 10 12345567777877775 33455543 44678999999999999987432
Q ss_pred eecCceeeeeecccccccceEEEEeccC
Q 003093 456 IITNRTKMADFTQPYIESGLVVVAPVRK 483 (848)
Q Consensus 456 ~t~~R~~~~dfs~p~~~~~~~~v~~~~~ 483 (848)
... ..+ -..|.....++++++...
T Consensus 164 ~~~---~~l-~~~~l~~~~~~~v~~~~h 187 (315)
T 1uth_A 164 ELQ---TGF-FQRRLFRHRYVCMFRKDH 187 (315)
T ss_dssp TCC---TTE-EEEEEEEECEEEEEETTC
T ss_pred CCC---CCc-eEEEeeccceEEEEeCCC
Confidence 211 122 245777888888887654
No 207
>2hzl_A Trap-T family sorbitol/mannitol transporter, periplasmic binding protein, SMOM; trap transporter, periplasmic subunit, ligand binding; 1.40A {Rhodobacter sphaeroides 2} PDB: 2hzk_A
Probab=83.67 E-value=2.5 Score=44.80 Aligned_cols=52 Identities=6% Similarity=-0.071 Sum_probs=37.7
Q ss_pred HHHHHHHHhCCCCcceEEeeCCCCCCCCChhHHHHHHhcCeeeEEeeceeeecCc
Q 003093 406 DVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDIAIITNR 460 (848)
Q Consensus 406 dll~~i~~~l~~~~~~~~~~~~~~~~n~s~~~~i~~l~~g~~D~~~~~~~~t~~R 460 (848)
.+.+.+.++.|-+++++..+-|. -|...++++.+..|.+||+..+......+
T Consensus 53 ~fa~~v~e~s~G~v~i~~~~~g~---Lg~~~~~~eav~~G~iD~~~~~~~~~~~~ 104 (365)
T 2hzl_A 53 VLSKMLSEATDGNFQIQVFSAGE---LVPGLQAADAVTEGTVECCHTVGYYYWGK 104 (365)
T ss_dssp HHHHHHHHHTTTSSEEEEECTTT---SSCGGGHHHHHHTTSSSEEEECGGGGTTT
T ss_pred HHHHHHHHhcCCeEEEEEecCCc---ccCHHHHHHHHHcCccceeecchhhhccc
Confidence 46677888888887787766322 14678999999999999998754443333
No 208
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=83.09 E-value=2.7 Score=44.94 Aligned_cols=88 Identities=10% Similarity=0.054 Sum_probs=64.5
Q ss_pred HHHHHHHHcCcEEEEEEEEcCCCcc--chHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEcc-
Q 003093 62 AIAEIVDHYGWREVIAIYVDDDHGR--NGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTH- 138 (848)
Q Consensus 62 ai~~~~~~~~w~~vaii~~dd~~g~--~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~- 138 (848)
.+.++++.+|.+++.+|+....+.. +..+.+.+.|++.|+++.....+....+.+.+...+..+++.++|+||..+.
T Consensus 23 ~l~~~l~~~g~~~~livtd~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGG 102 (387)
T 3bfj_A 23 VVGERCQLLGGKKALLVTDKGLRAIKDGAVDKTLHYLREAGIEVAIFDGVEPNPKDTNVRDGLAVFRREQCDIIVTVGGG 102 (387)
T ss_dssp GHHHHHHHTTCSEEEEECCTTTC--CCSSHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHTTCCEEEEEESH
T ss_pred HHHHHHHHcCCCEEEEEECcchhhccchHHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 4566778888899999986665555 4789999999999998755445555556688888999999999999997654
Q ss_pred -CCcHHHHHHHH
Q 003093 139 -YNRGPVVFHVA 149 (848)
Q Consensus 139 -~~~~~~~~~~a 149 (848)
.-+...++...
T Consensus 103 sv~D~aK~iA~~ 114 (387)
T 3bfj_A 103 SPHDCGKGIGIA 114 (387)
T ss_dssp HHHHHHHHHHHH
T ss_pred chhhHHHHHHHH
Confidence 34555555443
No 209
>3qi7_A Putative transcriptional regulator; periplasmic binding protein-like, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.86A {Clostridium difficile}
Probab=82.79 E-value=5.3 Score=41.84 Aligned_cols=151 Identities=15% Similarity=0.072 Sum_probs=86.2
Q ss_pred CCeEEEEccCCchhHHHHHHhhccCCccEEecccCCCCCCC--CCCCceEeccCChHHHHHHHHHHHHHcCcEEEEEEEE
Q 003093 3 GQTVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSS--LQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYV 80 (848)
Q Consensus 3 ~~V~aiIGp~~S~~~~ava~i~~~~~vP~Is~~at~p~ls~--~~~p~f~r~~p~d~~q~~ai~~~~~~~~w~~vaii~~ 80 (848)
.++.+||.-..............+.+++.|-+.+....-.. ..+.- +.+...+..-+..+++.+...|-++++.|..
T Consensus 86 ~gyk~II~n~~~~~~~~~i~~lkekrvDgIIi~~~~~ed~~~i~~~~d-i~V~~Dn~~Ggy~A~~~Li~~Ghk~Ia~Isg 164 (371)
T 3qi7_A 86 KEVQAIVVSTDQAGLLPALQKVKEKRPEIITISAPMGDDKNQLSQFVD-VNLGVSAEERGKVLAERSKEMGAKAFIHYAS 164 (371)
T ss_dssp TTEEEEEEECSSCCCHHHHHHHHHHCTTSEEEESSCCSCHHHHHHHSS-EEEECCHHHHHHHHHHHHHHTTCSCEEEEEE
T ss_pred CCCeEEEEECCCcchHHHHHHHHhcCCCEEEEeccccccchhhcccCc-eEEEeChHHHHHHHHHHHHHCCCCEEEEEec
Confidence 45677775443322233455566666665544443111000 00111 2344555556667778899999999999986
Q ss_pred cCC--C--ccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHH-H--------hc-CCCeEEEEEccCCcHHHHH
Q 003093 81 DDD--H--GRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVK-V--------AL-TESRIIVVHTHYNRGPVVF 146 (848)
Q Consensus 81 dd~--~--g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~-i--------~~-~~~~viv~~~~~~~~~~~~ 146 (848)
... + ...-.+.++++++++|+.+.....-.+ ..+..+. ..++ | .. ..++. |++++...+..++
T Consensus 165 p~~~~~~~~~~R~~Gyk~Al~e~Gi~~~~~~~~d~-t~e~G~~-~a~~lL~~~~~~~~~~~~~~TA-IFatND~mAiG~i 241 (371)
T 3qi7_A 165 TDDLKDVNIAKRLEMIKETCKNIGLPFVQVNTPNI-NTEEDKN-KVKQFLNEDIEKQVKKYGKDIN-VFGVNEYMDEVIL 241 (371)
T ss_dssp TTGGGSHHHHHHHHHHHHHHHHTTCCEEEEEECCC-SSTHHHH-HHHHHHHHHHHHHHHHHCSCCE-EEESSHHHHHHHH
T ss_pred cccccchhHHHHHHHHHHHHHHcCCCceeecCCCC-chHHHHH-HHHHHHhccccchhhccCCCcE-EEECCHHHHHHHH
Confidence 443 2 223567899999999998765432212 1222222 2222 1 12 23455 4456667788899
Q ss_pred HHHHHcCCCCC
Q 003093 147 HVAQYLGMLGT 157 (848)
Q Consensus 147 ~~a~~~g~~~~ 157 (848)
++++++|...|
T Consensus 242 kal~e~Gi~VP 252 (371)
T 3qi7_A 242 TKALELKYIVA 252 (371)
T ss_dssp HHHHHHCCBBC
T ss_pred HHHHHcCCccC
Confidence 99999997544
No 210
>1twy_A ABC transporter, periplasmic substrate-binding PR; nysgxrc target, structural genomics, protei structure initiative, PSI; 1.65A {Vibrio cholerae o1 biovar eltor} SCOP: c.94.1.1
Probab=82.75 E-value=17 Score=36.22 Aligned_cols=71 Identities=14% Similarity=0.039 Sum_probs=46.6
Q ss_pred eeHHHHHHHHHhC-CCCcceEEeeCCCCCCCCChhHHHHHHhcCeeeEEeeceeeecCce-eeeeecccccccceEEEEe
Q 003093 403 FCIDVFTAAINLL-PYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDIAIITNRT-KMADFTQPYIESGLVVVAP 480 (848)
Q Consensus 403 ~~~dll~~i~~~l-~~~~~~~~~~~~~~~~n~s~~~~i~~l~~g~~D~~~~~~~~t~~R~-~~~dfs~p~~~~~~~~v~~ 480 (848)
+-.+++..+.++. +.+ +.... ++..+++.+|.+|++|+++........+. ..+. ..|+....++++++
T Consensus 41 ~l~~~l~~f~~~~P~i~--v~i~~-------~~~~~~~~~l~~g~~Di~i~~~~~~~~~~~~~~~-~~~l~~~~~~~v~~ 110 (290)
T 1twy_A 41 IMDVLAEKYNQQHPETY--VAVQG-------VGSTAGISLLKKGVADIAMTSRYLTESEAQNTLH-TFTLAFDGLAIVVN 110 (290)
T ss_dssp HHHHHHHHHHHHCTTCE--EEEEE-------SCHHHHHHHHHTTSCSEEEESSCCCTTTCCTTCE-EEEEEEEEEEEEEC
T ss_pred HHHHHHHHHHhhCCCce--EEEEe-------cCcHHHHHHHhcCCCcEEEecCCCchhhhhcCce-EEEEEeeeEEEEEC
Confidence 3456778888877 455 44433 45788999999999999987443322110 1222 35777888899888
Q ss_pred ccC
Q 003093 481 VRK 483 (848)
Q Consensus 481 ~~~ 483 (848)
+..
T Consensus 111 ~~~ 113 (290)
T 1twy_A 111 QAN 113 (290)
T ss_dssp TTC
T ss_pred CCC
Confidence 655
No 211
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=82.16 E-value=1.1 Score=46.17 Aligned_cols=57 Identities=14% Similarity=0.093 Sum_probs=50.0
Q ss_pred CcchhhhhHHHHhhhcC--ccccccchhHHHHHHHHhhhhhhhccccceeeeeeeeccc
Q 003093 532 QVVTIFWFSFSTMFFAH--KEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKL 588 (848)
Q Consensus 532 ~~~~~~~~~~~~l~~~~--~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~ 588 (848)
++.+++|+++.++...| .-.|.+..+|++.+++.++++++.+.-++.+++.++.+..
T Consensus 78 s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~~~~ 136 (321)
T 2qks_A 78 GFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQPKK 136 (321)
T ss_dssp THHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred chhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 78999999999998665 5589999999999999999999999999999988876543
No 212
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=81.74 E-value=20 Score=29.20 Aligned_cols=96 Identities=13% Similarity=0.150 Sum_probs=66.6
Q ss_pred EeccCChHHHHHHHHHHHHHcCcEEEEEEEEcCCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhc--
Q 003093 50 VRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVAL-- 127 (848)
Q Consensus 50 ~r~~p~d~~q~~ai~~~~~~~~w~~vaii~~dd~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~-- 127 (848)
|-...+|....+.++.-++..| -+|.++|+|.+- .....-.+.+++.|..|... . +..||+.-+..|-.
T Consensus 5 fvvfssdpeilkeivreikrqg-vrvvllysdqde--krrrerleefekqgvdvrtv---e---dkedfrenireiwery 75 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQG-VRVVLLYSDQDE--KRRRERLEEFEKQGVDVRTV---E---DKEDFRENIREIWERY 75 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTT-CEEEEEECCSCH--HHHHHHHHHHHTTTCEEEEC---C---SHHHHHHHHHHHHHHC
T ss_pred EEEecCCHHHHHHHHHHHHhCC-eEEEEEecCchH--HHHHHHHHHHHHcCCceeee---c---cHHHHHHHHHHHHHhC
Confidence 4445677777788888888888 467889977652 23334456788899887532 2 45788888877754
Q ss_pred CCCeEEEEEccC--CcHHHHHHHHHHcCC
Q 003093 128 TESRIIVVHTHY--NRGPVVFHVAQYLGM 154 (848)
Q Consensus 128 ~~~~viv~~~~~--~~~~~~~~~a~~~g~ 154 (848)
-+-|++++.+.. +-...++..|++.|.
T Consensus 76 pqldvvvivttddkewikdfieeakergv 104 (162)
T 2l82_A 76 PQLDVVVIVTTDDKEWIKDFIEEAKERGV 104 (162)
T ss_dssp TTCCEEEEEECCCHHHHHHHHHHHHHTTC
T ss_pred CCCcEEEEEecCcHHHHHHHHHHHHhcCc
Confidence 456777665443 456679999999886
No 213
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=81.65 E-value=1.5 Score=46.76 Aligned_cols=90 Identities=8% Similarity=0.030 Sum_probs=66.7
Q ss_pred HHHHHHHHHcCcEEEEEEEEcCCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccC-
Q 003093 61 AAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY- 139 (848)
Q Consensus 61 ~ai~~~~~~~~w~~vaii~~dd~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~- 139 (848)
..+.++++.+|.+++.+|+...-...+..+.+.+.|++.|+++.....+....+.+.+...+..+++.++|+||..+.+
T Consensus 20 ~~l~~~~~~~g~~~~liVtd~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 99 (383)
T 3ox4_A 20 EKAIKDLNGSGFKNALIVSDAFMNKSGVVKQVADLLKAQGINSAVYDGVMPNPTVTAVLEGLKILKDNNSDFVISLGGGS 99 (383)
T ss_dssp HHHHHTTTTSCCCEEEEEEEHHHHHTTHHHHHHHHHHTTTCEEEEEEEECSSCBHHHHHHHHHHHHHHTCSEEEEEESHH
T ss_pred HHHHHHHHHcCCCEEEEEECCchhhCchHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCcCEEEEeCCcH
Confidence 4566778889999999998665433346788999999999987655555555667888888999988899999887654
Q ss_pred -CcHHHHHHHHH
Q 003093 140 -NRGPVVFHVAQ 150 (848)
Q Consensus 140 -~~~~~~~~~a~ 150 (848)
-+...++....
T Consensus 100 v~D~aK~ia~~~ 111 (383)
T 3ox4_A 100 PHDCAKAIALVA 111 (383)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 45555554443
No 214
>1sw5_A Osmoprotection protein (PROX); binding-protein, compatible solutes, cation-PI interactions, classical hydrogen bonds, protein binding; 1.80A {Archaeoglobus fulgidus} SCOP: c.94.1.1 PDB: 1sw4_A 1sw1_A 1sw2_A 3mam_A*
Probab=81.27 E-value=6.8 Score=39.42 Aligned_cols=104 Identities=9% Similarity=0.044 Sum_probs=55.1
Q ss_pred CCCChHHhhcCCCCeeEEeCchHHH--------HHHhhhCCCccCcccCCCHHHHHHHhhcCCCCCceEEEEccHHHHHH
Q 003093 591 PIKGIDSLRSSNYPIGYQVNSFARN--------YLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAEL 662 (848)
Q Consensus 591 ~i~sl~dL~~s~~~i~~~~~s~~~~--------~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~ 662 (848)
.|+|++||. ++...+..|+...- -+.+..++....+... +..+...++.+ |+++++....+....
T Consensus 124 ~i~si~DL~--g~~~~~~~g~~~~~~~~~~g~~~~~~~yGl~~~~~~~~-~~~~~~~Al~~----g~vd~~~~~~p~~~~ 196 (275)
T 1sw5_A 124 GVEKISDLA--EFADQLVFGSDPEFASRPDGLPQIKKVYGFEFKEVKQM-EPTLMYEAIKN----KQVDVIPAYTTDSRV 196 (275)
T ss_dssp TCCBGGGGT--TTGGGCEEEECHHHHHSTTSHHHHHHHHTCCCSEEEEC-CGGGHHHHHHT----TSCSEEEEETTCHHH
T ss_pred CCCcHHHHH--hhhcceEeccCcccccccchHHHHHHhcCCCcccccCC-CHHHHHHHHHc----CCCeEEEEeCCCcch
Confidence 799999998 54222222221110 0223344443344455 56678899999 899998887765543
Q ss_pred HHhcCCcEEEeCCc--c-ccCCceeeecCCCCchHHHHHHHHhhh
Q 003093 663 FLSTRCEFSIVGQV--F-TKNGWGFAFPRDSPLAVDISTAILKLS 704 (848)
Q Consensus 663 ~~~~~~~l~~~~~~--~-~~~~~~~~~~k~spl~~~in~~i~~l~ 704 (848)
- + .+++++.+. + .......+++++..=...+-+.+.++.
T Consensus 197 ~--~-~~l~~L~d~~~~~~~~~~~~v~~~~~~~~P~~~~~l~~l~ 238 (275)
T 1sw5_A 197 D--L-FNLKILEDDKGALPPYDAIIIVNGNTAKDEKLISVLKLLE 238 (275)
T ss_dssp H--H-TTEEECBCTTCCSCCCEEEEEECTTGGGCHHHHHHHHTTT
T ss_pred h--c-CCeEEccCCcccCCccceeeeeehhhccChHHHHHHHHHH
Confidence 2 2 256666542 2 223334456655320034445555553
No 215
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=81.03 E-value=0.57 Score=49.63 Aligned_cols=75 Identities=15% Similarity=0.218 Sum_probs=57.7
Q ss_pred HHHHHHHHhhhhhcccCCCCCCCCCCCcchhhhhHHHHhhhcC--ccccccchhHHHHHHHHhhhhhhhccccceeeeee
Q 003093 506 FFLAVGAVVWILEHRLNDEFRGPPKRQVVTIFWFSFSTMFFAH--KEKTVSALGRLVLIIWLFVVLIINSSYTASLTSIL 583 (848)
Q Consensus 506 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~L 583 (848)
.+++.+++++.+++..+++ ...++.+++|+++.++...| .-.|.+..+|++.+++.++++++.+...+.+++.+
T Consensus 139 ~~~~~a~~~~~~e~~~~~~----~f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~~~~~i~~~~ 214 (355)
T 3beh_A 139 VLFAVALAAYVIERDIQPE----KFGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGF 214 (355)
T ss_dssp HHHHHHHHHHHHHTTTCHH----HHSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCCc----ccccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555667777643321 13468899999999998665 44899999999999999999999999999887766
Q ss_pred e
Q 003093 584 T 584 (848)
Q Consensus 584 t 584 (848)
.
T Consensus 215 ~ 215 (355)
T 3beh_A 215 Y 215 (355)
T ss_dssp H
T ss_pred H
Confidence 4
No 216
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=77.14 E-value=2.5 Score=46.98 Aligned_cols=73 Identities=12% Similarity=0.162 Sum_probs=54.7
Q ss_pred HHHHHhhhhhcccCCCCCCCCCCCcchhhhhHHHHhhhcC--ccccccchhHHHHHHHHhhhhhhhccccceeeeeeee
Q 003093 509 AVGAVVWILEHRLNDEFRGPPKRQVVTIFWFSFSTMFFAH--KEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTV 585 (848)
Q Consensus 509 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~ 585 (848)
+.+.+++.++... ......++..++|+++.++...| .-.|.+..+|++.+++.++++++.+...|.+.+.+..
T Consensus 356 if~~~~~~~e~~~----~~~~F~s~~~a~y~~~vT~TTvGYGDi~P~t~~gr~f~~~~~l~G~~~l~l~iavI~~~f~~ 430 (514)
T 2r9r_B 356 LFSSAVYFAEADE----RDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNY 430 (514)
T ss_dssp HHHHHHHHHHTTC----TTCSCSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHhhhheeeccC----CCccccchhhhhheeeeEEEecccCCCCCCCcchHhhehhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555322 23345678999999999998665 4478899999999999999999999999988775544
No 217
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=75.62 E-value=9.7 Score=38.86 Aligned_cols=79 Identities=6% Similarity=0.019 Sum_probs=59.9
Q ss_pred EEEEEEEE--cCCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccCCc-HHHHHHHH
Q 003093 73 REVIAIYV--DDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNR-GPVVFHVA 149 (848)
Q Consensus 73 ~~vaii~~--dd~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~-~~~~~~~a 149 (848)
++|+++.. +++|.......+.+++++.|..+..... ..+.......+..+.+.++|.|++...... ....++++
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 79 (313)
T 3m9w_A 3 VKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSA---NGNEETQMSQIENMINRGVDVLVIIPYNGQVLSNVVKEA 79 (313)
T ss_dssp CEEEEEESCCSSSTTHHHHHHHHHHHHHTSCEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEEECSSTTSCHHHHHHH
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEECC---CCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHHHH
Confidence 46888885 4788889999999999999998876533 223355566788888889999998866443 35688888
Q ss_pred HHcCC
Q 003093 150 QYLGM 154 (848)
Q Consensus 150 ~~~g~ 154 (848)
.+.|.
T Consensus 80 ~~~~i 84 (313)
T 3m9w_A 80 KQEGI 84 (313)
T ss_dssp HTTTC
T ss_pred HHCCC
Confidence 88776
No 218
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=75.53 E-value=3 Score=44.51 Aligned_cols=89 Identities=9% Similarity=0.041 Sum_probs=64.3
Q ss_pred HHHHHHHHcCcEEEEEEEEcCCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEcc--C
Q 003093 62 AIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTH--Y 139 (848)
Q Consensus 62 ai~~~~~~~~w~~vaii~~dd~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~--~ 139 (848)
.+.++++.+|.+++.+|+.......+..+.+.+.|++.|+++.....+....+.+.+...+..+++.++|+||..+. .
T Consensus 21 ~l~~~l~~~g~~~~livtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGGsv 100 (386)
T 1rrm_A 21 ALTDEVKRRGYQKALIVTDKTLVQCGVVAKVTDKMDAAGLAWAIYDGVVPNPTITVVKEGLGVFQNSGADYLIAIGGGSP 100 (386)
T ss_dssp GHHHHHHHHTCCEEEEECBHHHHHTTHHHHHHHHHHHTTCEEEEECBCCSSCBHHHHHHHHHHHHHHTCSEEEEEESHHH
T ss_pred HHHHHHHHcCCCEEEEEECcchhhchHHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCcCEEEEeCChHH
Confidence 45667777888999888854443334688899999999988765555555556688888889999889999997654 3
Q ss_pred CcHHHHHHHHH
Q 003093 140 NRGPVVFHVAQ 150 (848)
Q Consensus 140 ~~~~~~~~~a~ 150 (848)
-+...++....
T Consensus 101 ~D~aK~iA~~~ 111 (386)
T 1rrm_A 101 QDTCKAIGIIS 111 (386)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45555555544
No 219
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=74.92 E-value=5.8 Score=42.60 Aligned_cols=88 Identities=9% Similarity=0.051 Sum_probs=62.0
Q ss_pred HHHHHHHHHcCcEEEEEEEEcCCCcc-chHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccC
Q 003093 61 AAIAEIVDHYGWREVIAIYVDDDHGR-NGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY 139 (848)
Q Consensus 61 ~ai~~~~~~~~w~~vaii~~dd~~g~-~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~ 139 (848)
..+.++++.+|.+++.+|+.+...-. +..+.+.+.|++.|+++.....+.+..+...+...+..+++.++|+||..+.+
T Consensus 32 ~~l~~~l~~~g~~r~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGG 111 (407)
T 1vlj_A 32 PKIGEEIKNAGIRKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEVSGVKPNPVLSKVHEAVEVAKKEKVEAVLGVGGG 111 (407)
T ss_dssp GGHHHHHHHTTCCEEEEEECSSHHHHSSHHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHTTCSEEEEEESH
T ss_pred HHHHHHHHHcCCCeEEEEECchHHhhccHHHHHHHHHHHcCCeEEEecCccCCCCHHHHHHHHHHHHhcCCCEEEEeCCh
Confidence 34566778889899998885343333 36788899999999887544444444566788888899999999999976543
Q ss_pred --CcHHHHHHH
Q 003093 140 --NRGPVVFHV 148 (848)
Q Consensus 140 --~~~~~~~~~ 148 (848)
-+...++..
T Consensus 112 sviD~AK~iA~ 122 (407)
T 1vlj_A 112 SVVDSAKAVAA 122 (407)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 445555444
No 220
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=74.03 E-value=18 Score=36.15 Aligned_cols=79 Identities=6% Similarity=-0.021 Sum_probs=58.1
Q ss_pred EEEEEEEE--cCCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccC-CcHHHHHHHH
Q 003093 73 REVIAIYV--DDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY-NRGPVVFHVA 149 (848)
Q Consensus 73 ~~vaii~~--dd~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~-~~~~~~~~~a 149 (848)
++|+++.. ++.|.......+.+++++.|..+..... ..+.......++.+...++|.|++.... ......++++
T Consensus 6 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 82 (291)
T 3l49_A 6 KTIGITAIGTDHDWDLKAYQAQIAEIERLGGTAIALDA---GRNDQTQVSQIQTLIAQKPDAIIEQLGNLDVLNPWLQKI 82 (291)
T ss_dssp CEEEEEESCCSSHHHHHHHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHHHHHHHHCCSEEEEESSCHHHHHHHHHHH
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEcC---CCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHHHH
Confidence 57888885 3557777889999999999998876532 2233555667778888899999987654 3455678888
Q ss_pred HHcCC
Q 003093 150 QYLGM 154 (848)
Q Consensus 150 ~~~g~ 154 (848)
.+.|+
T Consensus 83 ~~~~i 87 (291)
T 3l49_A 83 NDAGI 87 (291)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 88886
No 221
>1xs5_A 29 kDa protein, membrane lipoprotein TPN32; periplasmic binding protein, methionine, membrane protein; 1.85A {Treponema pallidum} SCOP: c.94.1.1
Probab=72.46 E-value=20 Score=35.15 Aligned_cols=36 Identities=8% Similarity=0.072 Sum_probs=26.0
Q ss_pred HHHHHHhCCCCcceEEeeCCCCCCCCChhHHHHHHhcCeeeEEe
Q 003093 408 FTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAV 451 (848)
Q Consensus 408 l~~i~~~l~~~~~~~~~~~~~~~~n~s~~~~i~~l~~g~~D~~~ 451 (848)
++...++-|+++++ +.+ .++......|.+|++|+..
T Consensus 21 ~~~~~~~~Gl~ve~--~~f------~d~~~~n~AL~~G~iD~n~ 56 (241)
T 1xs5_A 21 AKEEVKKQHIELRI--VEF------TNYVALNEAVMRGDILMNF 56 (241)
T ss_dssp HHHHHHTTTEEEEE--EEC------SCHHHHHHHHHHTSSSEEE
T ss_pred HHHHHHHcCCeEEE--EEc------CChHHHHHHHHcCCCCEec
Confidence 34455566877544 444 3589999999999999974
No 222
>3hhf_B Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 2.30A {Neisseria meningitidis serogroup B}
Probab=72.38 E-value=3.5 Score=38.93 Aligned_cols=80 Identities=11% Similarity=0.017 Sum_probs=48.5
Q ss_pred ceEEEEecCCCCccceEEeCCCcceeeeeHHHHHHHHHhCCCCcceEEeeCCCCCCCCChhHHHHHHhcCeeeEEeecee
Q 003093 376 RHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDIA 455 (848)
Q Consensus 376 ~~lrv~v~~~~~~~p~~~~~~~~~~~G~~~dll~~i~~~l~~~~~~~~~~~~~~~~n~s~~~~i~~l~~g~~D~~~~~~~ 455 (848)
.+||||+... . ...+-.+++..+.++.+ .+++.... - +.+.+|.+|++|+++....
T Consensus 7 g~l~Ig~~~~--~-----------~~~~l~~~l~~f~~~~P-~v~l~i~~---------~-~~~~~l~~g~~D~~i~~~~ 62 (213)
T 3hhf_B 7 GVLSVDSAMP--M-----------VLHLLAPLAAKFNERYP-HIRLSLVS---------S-EGYINLIERKVDIALRAGE 62 (213)
T ss_dssp EEEEEEECHH--H-----------HHHTHHHHHHHHHHHCT-TEEEEEEC---------C-STTHHHHTTSSSEEEECC-
T ss_pred ceEEEecCHH--H-----------HHHHHHHHHHHHHHHCC-CcEEEEEe---------C-CcHHHHHhCCccEEEEEec
Confidence 4788888631 1 12355678888888774 23344432 1 1234588999999987443
Q ss_pred eecCceeeeeecccccccceEEEEeccC
Q 003093 456 IITNRTKMADFTQPYIESGLVVVAPVRK 483 (848)
Q Consensus 456 ~t~~R~~~~dfs~p~~~~~~~~v~~~~~ 483 (848)
... ..+ -+.+.....+++++++..
T Consensus 63 ~~~---~~~-~~~~l~~~~~~~v~~~~~ 86 (213)
T 3hhf_B 63 LDD---SGL-RARHLFDSRFRVIASPEY 86 (213)
T ss_dssp -CC---SSE-EEEEEEEECEEEEECHHH
T ss_pred CCC---ccc-eEEeeecceEEEEeCHHH
Confidence 222 222 256788889999987654
No 223
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=71.83 E-value=13 Score=36.74 Aligned_cols=79 Identities=13% Similarity=0.070 Sum_probs=57.5
Q ss_pred EEEEEEEEc--CCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccCCcHHHHHHHHH
Q 003093 73 REVIAIYVD--DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQ 150 (848)
Q Consensus 73 ~~vaii~~d--d~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~~~~~a~ 150 (848)
+.|+++..+ +.|.......+.+++++.|..+..... ..+...-...+..+.+.++|.|++..........++++.
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 79 (272)
T 3o74_A 3 RTLGFILPDLENPSYARIAKQLEQGARARGYQLLIASS---DDQPDSERQLQQLFRARRCDALFVASCLPPEDDSYRELQ 79 (272)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHH
T ss_pred eEEEEEeCCCcChhHHHHHHHHHHHHHHCCCEEEEEeC---CCCHHHHHHHHHHHHHcCCCEEEEecCccccHHHHHHHH
Confidence 467888754 557788889999999999998876432 223355566778888889999998765533355777888
Q ss_pred HcCC
Q 003093 151 YLGM 154 (848)
Q Consensus 151 ~~g~ 154 (848)
+.|.
T Consensus 80 ~~~i 83 (272)
T 3o74_A 80 DKGL 83 (272)
T ss_dssp HTTC
T ss_pred HcCC
Confidence 8776
No 224
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=71.77 E-value=4.2 Score=43.28 Aligned_cols=74 Identities=15% Similarity=0.103 Sum_probs=50.9
Q ss_pred HHHHHHHHcCcEEEEEEEEcCCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccC
Q 003093 62 AIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY 139 (848)
Q Consensus 62 ai~~~~~~~~w~~vaii~~dd~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~ 139 (848)
.+.++++.+| +++.+|+....+. ...+.+.+.|++ |+.+.+ ..+....+.+++...+..+++.++|+||-.+.+
T Consensus 43 ~l~~~l~~~g-~r~liVtd~~~~~-~~~~~v~~~L~~-g~~~~~-~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGG 116 (387)
T 3uhj_A 43 KLAAYLAPLG-KRALVLIDRVLFD-ALSERIGKSCGD-SLDIRF-ERFGGECCTSEIERVRKVAIEHGSDILVGVGGG 116 (387)
T ss_dssp TTHHHHGGGC-SEEEEEECTTTHH-HHHHHC-------CCEEEE-EECCSSCSHHHHHHHHHHHHHHTCSEEEEESSH
T ss_pred HHHHHHHHcC-CEEEEEECchHHH-HHHHHHHHHHHc-CCCeEE-EEcCCCCCHHHHHHHHHHHhhcCCCEEEEeCCc
Confidence 4566788889 9998888655543 367788888999 988844 445555667888888888888899999988664
No 225
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=71.15 E-value=8.3 Score=40.78 Aligned_cols=88 Identities=9% Similarity=0.063 Sum_probs=62.7
Q ss_pred HHHHHHHHHcCcEEEEEEEEcCCCcc-chHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccC
Q 003093 61 AAIAEIVDHYGWREVIAIYVDDDHGR-NGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY 139 (848)
Q Consensus 61 ~ai~~~~~~~~w~~vaii~~dd~~g~-~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~ 139 (848)
..+.++++.+| +++.+|+....+-. +..+.+.+.|++.|+++.....+....+.+.+...+..+++.++|+||..+.+
T Consensus 30 ~~l~~~l~~~g-~~~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGG 108 (371)
T 1o2d_A 30 EKRGNIIDLLG-KRALVVTGKSSSKKNGSLDDLKKLLDETEISYEIFDEVEENPSFDNVMKAVERYRNDSFDFVVGLGGG 108 (371)
T ss_dssp HHHGGGGGGTC-SEEEEEEESSGGGTSSHHHHHHHHHHHTTCEEEEEEEECSSCBHHHHHHHHHHHTTSCCSEEEEEESH
T ss_pred HHHHHHHHHcC-CEEEEEECchHHhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHhcCCCEEEEeCCh
Confidence 34556677778 89999986644443 35788999999999887554455555566888899999998999999977543
Q ss_pred --CcHHHHHHHH
Q 003093 140 --NRGPVVFHVA 149 (848)
Q Consensus 140 --~~~~~~~~~a 149 (848)
-+...++...
T Consensus 109 sv~D~AK~iA~~ 120 (371)
T 1o2d_A 109 SPMDFAKAVAVL 120 (371)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 4455554443
No 226
>1nh8_A ATP phosphoribosyltransferase; prtase, de novo His biosynthesis, PRPP, structural genomics, PSI, protei structure initiative; HET: AMP HIS; 1.80A {Mycobacterium tuberculosis H37RV} SCOP: c.94.1.1 d.58.5.3 PDB: 1nh7_A*
Probab=71.11 E-value=9.1 Score=38.57 Aligned_cols=102 Identities=12% Similarity=0.111 Sum_probs=60.8
Q ss_pred CCCChHHhhcCCCCeeEEeCchHHHHHHhhhCCCccCcccCCCHHHHHHHhhcCCCCCceEEEEccHHHHHHHHhcCCcE
Q 003093 591 PIKGIDSLRSSNYPIGYQVNSFARNYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRCEF 670 (848)
Q Consensus 591 ~i~sl~dL~~s~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l 670 (848)
.+++++||. +++|++.--.....||. +.+.. .+++...-.-|..-.+ |-.|++++-.....-+.++ +|
T Consensus 120 ~~~~~~~l~--~~RIATkYp~l~r~yf~-~~gi~-~~Ii~l~GsvE~aP~~------GlADaIvDiVsTG~TLraN--gL 187 (304)
T 1nh8_A 120 RNWTTADLA--GMRIATAYPNLVRKDLA-TKGIE-ATVIRLDGAVEISVQL------GVADAIADVVGSGRTLSQH--DL 187 (304)
T ss_dssp SCCCGGGGT--TCEEEESCHHHHHHHHH-HHTCC-CEEEECSSCCTHHHHT------TSCSEEEEEESSSHHHHHT--TE
T ss_pred CcCChHHhC--CCEEEeCcHHHHHHHHH-HCCCe-EEEEECCCceeeccCC------CcccEEEEEeCChHHHHHC--cC
Confidence 455788886 78898877777888984 44554 4455444333433333 6677888866655554444 57
Q ss_pred EEeCCccccCCceeeecCCCC-c--hHHHHHHHHhhh
Q 003093 671 SIVGQVFTKNGWGFAFPRDSP-L--AVDISTAILKLS 704 (848)
Q Consensus 671 ~~~~~~~~~~~~~~~~~k~sp-l--~~~in~~i~~l~ 704 (848)
..+++.+....-.+...+.+. . .+.++..+.+|.
T Consensus 188 ~~i~e~I~~SsA~LI~n~~s~~~~k~~~i~~l~~rl~ 224 (304)
T 1nh8_A 188 VAFGEPLCDSEAVLIERAGTDGQDQTEARDQLVARVQ 224 (304)
T ss_dssp EEEEEEEEEECEEEEEEC--------CHHHHHHHHHH
T ss_pred EEcccEEEEEEEEEEEccccchhhhHHHHHHHHHHHH
Confidence 777555555566666667652 2 235666666654
No 227
>3kos_A HTH-type transcriptional activator AMPR; alpha-beta sandwich, DNA-binding, transcription regulation; HET: MES; 1.83A {Citrobacter freundii} PDB: 3kot_A
Probab=70.98 E-value=15 Score=34.66 Aligned_cols=105 Identities=11% Similarity=0.065 Sum_probs=58.2
Q ss_pred CCChHHhhcCCCCe-eEEeCchHHHHHHhhhCCCc---cCcccCCCHHHHHHHhhcCCCCCceEEEEccHHHHHHHHhcC
Q 003093 592 IKGIDSLRSSNYPI-GYQVNSFARNYLVDELNIDE---SRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTR 667 (848)
Q Consensus 592 i~sl~dL~~s~~~i-~~~~~s~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~ 667 (848)
.-+++||. +.++ ....+.....++.+...... .....+++.+...+++.. |...+++-+.....+.....
T Consensus 95 ~~~~~~L~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~----g~Gi~~lp~~~~~~~~~~~~ 168 (219)
T 3kos_A 95 IQTPADIL--KFPLLRSYRRDEWALWMQTVGEAPPSPTHNVMVFDSSVTMLEAAQA----GMGVAIAPVRMFTHLLSSER 168 (219)
T ss_dssp CSSGGGGG--GSCEEEESCTTHHHHHHHHTTCCCCCTTSCEEEESCHHHHHHHHHT----TSCBEEEEGGGCHHHHHTTS
T ss_pred cCCHHHHh--cCceeccCCccCHHHHHHHcCCCCCccccceeEEccHHHHHHHHHc----CCCeEeehHHhhHHHHHcCC
Confidence 34578887 5553 34445555555543222111 223567899999999999 66667766554444332222
Q ss_pred CcEEEeCCccccCCceeeecCCCCchHHHHHHHHhh
Q 003093 668 CEFSIVGQVFTKNGWGFAFPRDSPLAVDISTAILKL 703 (848)
Q Consensus 668 ~~l~~~~~~~~~~~~~~~~~k~spl~~~in~~i~~l 703 (848)
. .....+......++++.+++.+....+...+..+
T Consensus 169 l-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~l 203 (219)
T 3kos_A 169 I-VQPFLTQIDLGSYWITRLQSRPETPAMREFSRWL 203 (219)
T ss_dssp S-BCCCCCCBCSCEEEEEEETTSCCCHHHHHHHHHH
T ss_pred e-eccccCCccCCcEEEEecccccCCHHHHHHHHHH
Confidence 2 1222223334467888888876655555544443
No 228
>3k6v_A Solute-binding protein MA_0280; MODA, molybdate, periplasmic BIN protein, ABC transporter, transport protein, ligand, metal- protein; HET: CIT; 1.69A {Methanosarcina acetivorans} PDB: 3k6u_A* 3k6w_A 3k6x_A
Probab=70.76 E-value=73 Score=33.10 Aligned_cols=69 Identities=13% Similarity=0.106 Sum_probs=43.7
Q ss_pred HHHHHHHHhC-CCCcceEEeeCCCCCCCCChhHHHHHHh-cC-eeeEEeeceeeecCc---eeeeeecccccccceEEEE
Q 003093 406 DVFTAAINLL-PYAVPYKLIPFGDGHNNPSCTELVRLIT-AG-VYDAAVGDIAIITNR---TKMADFTQPYIESGLVVVA 479 (848)
Q Consensus 406 dll~~i~~~l-~~~~~~~~~~~~~~~~n~s~~~~i~~l~-~g-~~D~~~~~~~~t~~R---~~~~dfs~p~~~~~~~~v~ 479 (848)
+|.+.+.++. |.++++.+- .-..++.++. +| .+|+.++.-.-..++ ....+...+|....+++++
T Consensus 59 ~l~~~Fe~~~pgv~V~~~~g---------gSg~l~~qi~e~G~~aDVf~sad~~~~~~l~~~g~~~~~~~~a~n~lVliv 129 (354)
T 3k6v_A 59 ELEAEFEAQHPGVDVQREAA---------GSAQSVRKITELGKKADVLASADYALIPSLMVPEYADWYAAFARNQMILAY 129 (354)
T ss_dssp HHHHHHHHHSTTCEEEEEEE---------CHHHHHHHHHTSCCCCSEEEESSTTHHHHHTTTTTCSCEEEEEECCEEEEE
T ss_pred HHHHHHHHHCCCcEEEEEeC---------CHHHHHHHHHhcCCCccEEEECCHHHHHHHHhCCCCCCceEeECCeEEEEE
Confidence 6777788887 888666543 2456778885 35 699988632211111 1123445677888899999
Q ss_pred eccC
Q 003093 480 PVRK 483 (848)
Q Consensus 480 ~~~~ 483 (848)
|+..
T Consensus 130 ~~~~ 133 (354)
T 3k6v_A 130 TNES 133 (354)
T ss_dssp CTTS
T ss_pred ECCC
Confidence 8766
No 229
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=70.74 E-value=13 Score=37.57 Aligned_cols=84 Identities=6% Similarity=-0.054 Sum_probs=60.7
Q ss_pred CcEEEEEEEE---cCCCccchHHHHHHHHhcc-CcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccCC-cHHHH
Q 003093 71 GWREVIAIYV---DDDHGRNGIAALGDTLAAK-RCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYN-RGPVV 145 (848)
Q Consensus 71 ~w~~vaii~~---dd~~g~~~~~~l~~~l~~~-g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~-~~~~~ 145 (848)
.-++|+++.. ++.|.......+.+++++. |..+..........+.......+..+...++|.|++..... .....
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~ 86 (304)
T 3gbv_A 7 KKYTFACLLPKHLEGEYWTDVQKGIREAVTTYSDFNISANITHYDPYDYNSFVATSQAVIEEQPDGVMFAPTVPQYTKGF 86 (304)
T ss_dssp CCEEEEEEEECCCTTSHHHHHHHHHHHHHHHTGGGCEEEEEEEECSSCHHHHHHHHHHHHTTCCSEEEECCSSGGGTHHH
T ss_pred CcceEEEEecCCCCchHHHHHHHHHHHHHHHHHhCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEECCCChHHHHHH
Confidence 3467888874 4567888889999999998 77766554332223445666778888889999999886654 34567
Q ss_pred HHHHHHcCC
Q 003093 146 FHVAQYLGM 154 (848)
Q Consensus 146 ~~~a~~~g~ 154 (848)
++.+.+.|+
T Consensus 87 ~~~~~~~~i 95 (304)
T 3gbv_A 87 TDALNELGI 95 (304)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHCCC
Confidence 888888886
No 230
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=69.92 E-value=16 Score=37.78 Aligned_cols=85 Identities=4% Similarity=-0.069 Sum_probs=58.5
Q ss_pred HHHcCcEEEEEEEEc----CCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccCCcH
Q 003093 67 VDHYGWREVIAIYVD----DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRG 142 (848)
Q Consensus 67 ~~~~~w~~vaii~~d----d~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~ 142 (848)
+..-.-+.|+++..+ ++|.......+.+++++.|..+..... ..+...-...+..+.+.++|.|++.......
T Consensus 56 l~~~~~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~ 132 (338)
T 3dbi_A 56 LSAKSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLADG---KHSAEEERQAIQYLLDLRCDAIMIYPRFLSV 132 (338)
T ss_dssp ----CCSEEEEEECTTTTSTTHHHHHHHHHHHHHHHTTCEEEEEEC---TTSHHHHHHHHHHHHHTTCSEEEECCSSSCH
T ss_pred hhhCCCCEEEEEecCCcccChhHHHHHHHHHHHHHHCCCEEEEEeC---CCChHHHHHHHHHHHhCCCCEEEEeCCCCCh
Confidence 333344678988865 567778889999999999998876432 1233444556778888899999998765555
Q ss_pred HHHHHHHHHcCC
Q 003093 143 PVVFHVAQYLGM 154 (848)
Q Consensus 143 ~~~~~~a~~~g~ 154 (848)
..+...+++.|.
T Consensus 133 ~~~~~~~~~~~i 144 (338)
T 3dbi_A 133 DEIDDIIDAHSQ 144 (338)
T ss_dssp HHHHHHHHHCSS
T ss_pred HHHHHHHHcCCC
Confidence 557777777665
No 231
>3hn0_A Nitrate transport protein; ABC transporter, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; 1.75A {Parabacteroides distasonis}
Probab=69.91 E-value=6.2 Score=39.90 Aligned_cols=61 Identities=10% Similarity=0.026 Sum_probs=41.4
Q ss_pred CCCeeEE-eCchHHHHHH---hhhCCCccCcccCC-CHHHHHHHhhcCCCCCceEEEEccHHHHHHHHhcC
Q 003093 602 NYPIGYQ-VNSFARNYLV---DELNIDESRLVPLN-SPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTR 667 (848)
Q Consensus 602 ~~~i~~~-~~s~~~~~l~---~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~ 667 (848)
|++|++. .|+.....++ +..+. +.+++... +..+...++.+ |++||.+...++......+.
T Consensus 96 GK~Iav~~~gs~~~~ll~~~L~~~Gl-dv~~~~~~~~~~~~~~al~~----G~vDa~~~~eP~~~~a~~~~ 161 (283)
T 3hn0_A 96 EPALYVFGNGTTPDILTRYYLGRQRL-DYPLNYAFNTAGEITQGILA----GKVNRAVLGEPFLSIALRKD 161 (283)
T ss_dssp SCCEECSSTTSHHHHHHHHHHHHHTC-CCCEECSCCSHHHHHHHHHH----TSCSEEEECTTHHHHHHHHC
T ss_pred CCEEEecCCCCcHHHHHHHHHHHcCC-ceEEEEccCCHHHHHHHHHc----CCCCEEEecccHHHHHHhhC
Confidence 8999975 5665444332 22344 34555555 68999999999 89999888778877655444
No 232
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=69.19 E-value=12 Score=27.57 Aligned_cols=40 Identities=30% Similarity=0.305 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCchhhhhHHHH
Q 003093 745 LCGLACLLALFIYLMQIVHQFSRHYPGDTESNGGSSRSARLQTFLS 790 (848)
Q Consensus 745 il~~g~~la~~vf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 790 (848)
++|.+.++.+++-+.-++.-++++++.++ +|-..+|++++
T Consensus 13 vlGg~~~lll~~glcI~ccvkcrhRrrqA------eRMSQikrlLs 52 (70)
T 2klu_A 13 VLGGVAGLLLFIGLGIFFSVRSRHRRRQA------ERMSQIKRLLS 52 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCCSSSC------TTSSHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHhhHHHHHHHHH------HHHHHHHHHHh
Confidence 34443333333333334344555554433 34456777665
No 233
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=69.11 E-value=16 Score=33.71 Aligned_cols=65 Identities=11% Similarity=0.118 Sum_probs=49.9
Q ss_pred EEEEEEEEcCCCcc---chHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcC-CCeEEEEEccC
Q 003093 73 REVIAIYVDDDHGR---NGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALT-ESRIIVVHTHY 139 (848)
Q Consensus 73 ~~vaii~~dd~~g~---~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~-~~~viv~~~~~ 139 (848)
-++++|...|+-|+ .....+...+++.|+++.....++. +.+++...+.+..+. ++|+|+..+..
T Consensus 11 ~~v~Ii~tGdE~g~i~D~n~~~l~~~L~~~G~~v~~~~iv~D--d~~~i~~~l~~a~~~~~~DlVittGG~ 79 (172)
T 1mkz_A 11 TRIAILTVSNRRGEEDDTSGHYLRDSAQEAGHHVVDKAIVKE--NRYAIRAQVSAWIASDDVQVVLITGGT 79 (172)
T ss_dssp CEEEEEEECSSCCGGGCHHHHHHHHHHHHTTCEEEEEEEECS--CHHHHHHHHHHHHHSSSCCEEEEESCC
T ss_pred CEEEEEEEeCCCCcccCccHHHHHHHHHHCCCeEeEEEEeCC--CHHHHHHHHHHHHhcCCCCEEEeCCCC
Confidence 47899988877664 2346788999999999988877775 347788888887665 68999988643
No 234
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=67.87 E-value=10 Score=38.36 Aligned_cols=80 Identities=11% Similarity=0.090 Sum_probs=58.3
Q ss_pred EEEEEEEE--cCCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccCC-cHHHHHHHH
Q 003093 73 REVIAIYV--DDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYN-RGPVVFHVA 149 (848)
Q Consensus 73 ~~vaii~~--dd~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~-~~~~~~~~a 149 (848)
++++++.. +++|.......+.+++++.|..+.... ....+.......+..+.+.++|.|++..... .....++++
T Consensus 5 ~~I~~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~--~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 82 (305)
T 3g1w_A 5 ETYMMITFQSGMDYWKRCLKGFEDAAQALNVTVEYRG--AAQYDIQEQITVLEQAIAKNPAGIAISAIDPVELTDTINKA 82 (305)
T ss_dssp CEEEEEESSTTSTHHHHHHHHHHHHHHHHTCEEEEEE--CSSSCHHHHHHHHHHHHHHCCSEEEECCSSTTTTHHHHHHH
T ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHHcCCEEEEeC--CCcCCHHHHHHHHHHHHHhCCCEEEEcCCCHHHHHHHHHHH
Confidence 56788873 467788889999999999999887532 2222345566677787778999999876543 345688888
Q ss_pred HHcCC
Q 003093 150 QYLGM 154 (848)
Q Consensus 150 ~~~g~ 154 (848)
.+.|+
T Consensus 83 ~~~~i 87 (305)
T 3g1w_A 83 VDAGI 87 (305)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 88886
No 235
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=66.79 E-value=22 Score=35.55 Aligned_cols=79 Identities=9% Similarity=-0.003 Sum_probs=59.0
Q ss_pred EEEEEEEEc--CCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccCC----cHHHHH
Q 003093 73 REVIAIYVD--DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYN----RGPVVF 146 (848)
Q Consensus 73 ~~vaii~~d--d~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~----~~~~~~ 146 (848)
+.|+++..+ +.|.......+.+++++.|..+.....- .+...-...+..+...++|.|++..... .....+
T Consensus 16 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~---~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 92 (298)
T 3tb6_A 16 KTIGVLTTYISDYIFPSIIRGIESYLSEQGYSMLLTSTN---NNPDNERRGLENLLSQHIDGLIVEPTKSALQTPNIGYY 92 (298)
T ss_dssp CEEEEEESCSSSTTHHHHHHHHHHHHHHTTCEEEEEECT---TCHHHHHHHHHHHHHTCCSEEEECCSSTTSCCTTHHHH
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCC---CChHHHHHHHHHHHHCCCCEEEEecccccccCCcHHHH
Confidence 789999844 6688888999999999999988764321 2334556677888888999999876432 345678
Q ss_pred HHHHHcCC
Q 003093 147 HVAQYLGM 154 (848)
Q Consensus 147 ~~a~~~g~ 154 (848)
+++.+.|+
T Consensus 93 ~~~~~~~i 100 (298)
T 3tb6_A 93 LNLEKNGI 100 (298)
T ss_dssp HHHHHTTC
T ss_pred HHHHhcCC
Confidence 88888886
No 236
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=65.70 E-value=10 Score=39.49 Aligned_cols=80 Identities=6% Similarity=0.028 Sum_probs=57.5
Q ss_pred cEEEEEEEEc---CCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhc--CCCeEEEEEccCCcHHHHH
Q 003093 72 WREVIAIYVD---DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVAL--TESRIIVVHTHYNRGPVVF 146 (848)
Q Consensus 72 w~~vaii~~d---d~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~--~~~~viv~~~~~~~~~~~~ 146 (848)
-.+|+++..+ ++|.......+.+++++.|.++..... ..+.......+..+.+ .++|.|++.........++
T Consensus 3 ~~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~g~~~~~~~~---~~~~~~~~~~i~~~i~~~~~vDgiIi~~~~~~~~~~~ 79 (350)
T 3h75_A 3 LTSVVFLNPGNSTETFWVSYSQFMQAAARDLGLDLRILYA---ERDPQNTLQQARELFQGRDKPDYLMLVNEQYVAPQIL 79 (350)
T ss_dssp CCEEEEEECSCTTCHHHHHHHHHHHHHHHHHTCEEEEEEC---TTCHHHHHHHHHHHHHSSSCCSEEEEECCSSHHHHHH
T ss_pred CCEEEEECCCCCCChHHHHHHHHHHHHHHHcCCeEEEEEC---CCCHHHHHHHHHHHHhcCCCCCEEEEeCchhhHHHHH
Confidence 3578888854 267888899999999999998876521 2233444556666666 5899999976555566788
Q ss_pred HHHHHcCC
Q 003093 147 HVAQYLGM 154 (848)
Q Consensus 147 ~~a~~~g~ 154 (848)
+.+.+.|.
T Consensus 80 ~~~~~~gi 87 (350)
T 3h75_A 80 RLSQGSGI 87 (350)
T ss_dssp HHHTTSCC
T ss_pred HHHHhCCC
Confidence 88887776
No 237
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=64.83 E-value=34 Score=34.26 Aligned_cols=77 Identities=10% Similarity=0.093 Sum_probs=54.4
Q ss_pred EEEEEEEE------cCCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccCCcHHHHH
Q 003093 73 REVIAIYV------DDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVF 146 (848)
Q Consensus 73 ~~vaii~~------dd~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~~~ 146 (848)
+.|+++.. ++.|.......+.+++++.|..+.....-. . ......+..+...++|.|++....... ..+
T Consensus 7 ~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~---~~~~~~~~~l~~~~vdGiIi~~~~~~~-~~~ 81 (294)
T 3qk7_A 7 DAIALAYPSRPRVLNNSTFLEMISWIGIELGKRGLDLLLIPDEP-G---EKYQSLIHLVETRRVDALIVAHTQPED-FRL 81 (294)
T ss_dssp CEEEEEEESCSGGGSCHHHHHHHHHHHHHHHHTTCEEEEEEECT-T---CCCHHHHHHHHHTCCSEEEECSCCSSC-HHH
T ss_pred ceEEEEecCCCccccChhHHHHHHHHHHHHHHCCCEEEEEeCCC-h---hhHHHHHHHHHcCCCCEEEEeCCCCCh-HHH
Confidence 57888886 356777888999999999999887654322 1 223445666777789999987654333 567
Q ss_pred HHHHHcCC
Q 003093 147 HVAQYLGM 154 (848)
Q Consensus 147 ~~a~~~g~ 154 (848)
+.+.+.|+
T Consensus 82 ~~l~~~~i 89 (294)
T 3qk7_A 82 QYLQKQNF 89 (294)
T ss_dssp HHHHHTTC
T ss_pred HHHHhCCC
Confidence 77888776
No 238
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=64.78 E-value=18 Score=36.30 Aligned_cols=79 Identities=11% Similarity=0.066 Sum_probs=58.0
Q ss_pred EEEEEEEEc--CCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccCC-cHHHHHHHH
Q 003093 73 REVIAIYVD--DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYN-RGPVVFHVA 149 (848)
Q Consensus 73 ~~vaii~~d--d~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~-~~~~~~~~a 149 (848)
++|+++..+ +.|.......+.+++++.|..+..... ..+.......+..+.+.++|.|++..... .....++++
T Consensus 9 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~~~ 85 (293)
T 3l6u_A 9 NIVGFTIVNDKHEFAQRLINAFKAEAKANKYEALVATS---QNSRISEREQILEFVHLKVDAIFITTLDDVYIGSAIEEA 85 (293)
T ss_dssp CEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEEC---SSCHHHHHHHHHHHHHTTCSEEEEECSCTTTTHHHHHHH
T ss_pred cEEEEEEecCCcHHHHHHHHHHHHHHHHcCCEEEEECC---CCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHHHH
Confidence 578888744 557778889999999999998876432 22335556777888888999999876543 334678888
Q ss_pred HHcCC
Q 003093 150 QYLGM 154 (848)
Q Consensus 150 ~~~g~ 154 (848)
.+.|+
T Consensus 86 ~~~~i 90 (293)
T 3l6u_A 86 KKAGI 90 (293)
T ss_dssp HHTTC
T ss_pred HHcCC
Confidence 88886
No 239
>3szp_A Transcriptional regulator, LYSR family; winged helix-turn helix, DNA-binding, transcription factor; 2.20A {Vibrio cholerae} PDB: 3t1b_B
Probab=64.58 E-value=4.4 Score=40.62 Aligned_cols=72 Identities=10% Similarity=-0.018 Sum_probs=43.0
Q ss_pred CcccCCCHHHHHHHhhcCCCCCceEEEEccHHHHHHHHhcCCcEEEeCC--ccccCCceeeecCCCCchHHHHHHHHhhh
Q 003093 627 RLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRCEFSIVGQ--VFTKNGWGFAFPRDSPLAVDISTAILKLS 704 (848)
Q Consensus 627 ~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~k~spl~~~in~~i~~l~ 704 (848)
....+++.+.....+.. |...+++-+.....+ .... .+..+.. ......++++.+++.+....+...+..+.
T Consensus 213 ~~~~~~~~~~~~~~v~~----g~Giailp~~~~~~~-~~~~-~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~l~ 286 (291)
T 3szp_A 213 GRFQASALNVVRSACSE----GLGITLMPDVMLREF-LEDG-SLVQVLSDWSSNPRDIYMLYNHKDHQPEKVRLFIDFVI 286 (291)
T ss_dssp CSEEESSHHHHHHHHHT----TCCEEEEEGGGTHHH-HHTT-TSEECCTTCBCCCEEEEEEECCGGGCCHHHHHHHHHHH
T ss_pred CceEECcHHHHHHHHHc----CCcEEEccHHHHHHH-HhCC-CeEEecCCccCCCCcEEEEECCCCCCCHHHHHHHHHHH
Confidence 34567888999999998 666677655544443 3332 3333322 23345678888888766555555554443
No 240
>2rin_A Putative glycine betaine-binding ABC transporter protein; type II binding protein, aromatic BOX, acetylcholine, protein binding; HET: ACH; 1.80A {Rhizobium meliloti} PDB: 2rej_A 2rf1_A 2reg_A* 3hcq_A
Probab=64.46 E-value=9.8 Score=38.77 Aligned_cols=38 Identities=18% Similarity=0.158 Sum_probs=27.0
Q ss_pred HHHHHHHHhCCCCcceEEeeCCCCCCCCChhHHHHHHhcCeeeEEee
Q 003093 406 DVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVG 452 (848)
Q Consensus 406 dll~~i~~~l~~~~~~~~~~~~~~~~n~s~~~~i~~l~~g~~D~~~~ 452 (848)
.+++.+.+..|+++++.. ++-.-+...|.+|++|+.+.
T Consensus 24 ~i~~~~Le~~G~~Ve~~~---------~~~~~~~~Al~~G~iD~~~~ 61 (298)
T 2rin_A 24 ATATTILEALGYETDVKV---------LSVPVTYTSLKNKDIDVFLG 61 (298)
T ss_dssp HHHHHHHHHHTCEEEEEC---------CCHHHHHHHHHHTSCCEEEE
T ss_pred HHHHHHHHHcCCceEEEE---------CCcHHHHHHHHcCCcEEEhh
Confidence 455555666798855542 33566788999999999875
No 241
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=64.45 E-value=19 Score=35.83 Aligned_cols=77 Identities=12% Similarity=0.096 Sum_probs=58.0
Q ss_pred EEEEEEEEc--CCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccCCcHHHHHHHHH
Q 003093 73 REVIAIYVD--DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQ 150 (848)
Q Consensus 73 ~~vaii~~d--d~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~~~~~a~ 150 (848)
+.|+++..+ +.|.......+.+++++.|..+..... ..+...-...+..+.+.++|.|++..... ...++.+.
T Consensus 8 ~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiIi~~~~~--~~~~~~l~ 82 (276)
T 3jy6_A 8 KLIAVIVANIDDYFSTELFKGISSILESRGYIGVLFDA---NADIEREKTLLRAIGSRGFDGLILQSFSN--PQTVQEIL 82 (276)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHTTTCEEEEEEC---TTCHHHHHHHHHHHHTTTCSEEEEESSCC--HHHHHHHH
T ss_pred cEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeC---CCCHHHHHHHHHHHHhCCCCEEEEecCCc--HHHHHHHH
Confidence 578888854 557788889999999999998876432 22334556677888888999999987666 66788888
Q ss_pred HcCC
Q 003093 151 YLGM 154 (848)
Q Consensus 151 ~~g~ 154 (848)
+.|+
T Consensus 83 ~~~i 86 (276)
T 3jy6_A 83 HQQM 86 (276)
T ss_dssp TTSS
T ss_pred HCCC
Confidence 7776
No 242
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=64.33 E-value=2.6 Score=42.24 Aligned_cols=66 Identities=12% Similarity=0.146 Sum_probs=49.8
Q ss_pred CCcchhhhhHHHHhhhcC--ccccccc-------hhHHHHHHHHhhhhhhhccccceeeeeeeeccccCCCCChH
Q 003093 531 RQVVTIFWFSFSTMFFAH--KEKTVSA-------LGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGID 596 (848)
Q Consensus 531 ~~~~~~~~~~~~~l~~~~--~~~p~s~-------~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~ 596 (848)
.++.+++|+++.++...| .-.|.+. ..|++.++|+++++.+.+...+.+++.+...+....+..-+
T Consensus 200 ~s~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~~~~~~~l~~~~~~~~ 274 (280)
T 3ukm_A 200 WNFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELHELKKFRKMFYVKK 274 (280)
T ss_dssp CCHHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHTTC---
T ss_pred CchhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 367899999999998665 3356555 36999999999999999999998888877766655544333
No 243
>3fd3_A Chromosome replication initiation inhibitor prote; structural genomics, LYSR, PSI-2, structure initiative; HET: MSE P33 PG4; 1.70A {Agrobacterium tumefaciens str}
Probab=64.33 E-value=30 Score=31.98 Aligned_cols=68 Identities=13% Similarity=0.009 Sum_probs=42.2
Q ss_pred eeeHHHHHHHHHhCCCCcceEEeeCCCCCCCCChhHHHHHHhcCeeeEEeeceeeecCceeeeeecccccccceEEEEec
Q 003093 402 GFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDIAIITNRTKMADFTQPYIESGLVVVAPV 481 (848)
Q Consensus 402 G~~~dll~~i~~~l~~~~~~~~~~~~~~~~n~s~~~~i~~l~~g~~D~~~~~~~~t~~R~~~~dfs~p~~~~~~~~v~~~ 481 (848)
.+-.+++..+.++.+.+ +.... ++...+++++.+|..|+++..-.... ..+ -..+.....++++++.
T Consensus 15 ~~l~~~l~~f~~~~~v~--l~l~~-------~~~~~~~~~l~~g~d~~~i~~~~~~~---~~l-~~~~l~~~~~~~v~~~ 81 (208)
T 3fd3_A 15 TWFLDAVSKFTGGSDYL--VNIAV-------DDQDHTVEWLRGGRVLAAVTAHDKPV---QGC-RVTPLGVLRYHATASP 81 (208)
T ss_dssp TTHHHHHHHHHHTSSCE--EEEEE-------CCSSCHHHHHHTTSCSEEEESCCSCC---TTC-EEEEEEEEEEEEEECH
T ss_pred HHHHHHHHHHHhhcCeE--EEEEe-------CCcHhHHHHHhcCcceEEEecCCCCC---CCc-eEEEccceEEEEEECh
Confidence 45677888888888544 55543 34567899999995555544222211 112 2456777788888765
Q ss_pred c
Q 003093 482 R 482 (848)
Q Consensus 482 ~ 482 (848)
.
T Consensus 82 ~ 82 (208)
T 3fd3_A 82 D 82 (208)
T ss_dssp H
T ss_pred H
Confidence 4
No 244
>2hpg_A ABC transporter, periplasmic substrate-binding protein; periplasmic binding protein, thermophilic proteins, trap- transport; HET: MSE; 1.90A {Thermotoga maritima}
Probab=63.96 E-value=5.4 Score=41.40 Aligned_cols=88 Identities=15% Similarity=-0.042 Sum_probs=53.3
Q ss_pred CCCCChHHhhcCCCCeeEEeCchHHHHHHhhhCCCccCcccCCCHHHHHHHhhcCCCCCceEEEEccHHHHHH-HHhcCC
Q 003093 590 SPIKGIDSLRSSNYPIGYQVNSFARNYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAEL-FLSTRC 668 (848)
Q Consensus 590 ~~i~sl~dL~~s~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~-~~~~~~ 668 (848)
.+|++++||. |++|.+..+......+ +.++.. .++. ...|...+|++ |.+|+.....+.+.- -+.+-.
T Consensus 148 ~pI~s~~DLk--G~KiRv~~~~~~~~~~-~alGa~---pv~m-~~~Evy~ALq~----G~VDg~~~p~~~~~~~~~~ev~ 216 (327)
T 2hpg_A 148 KPIRKPEDLN--GLRIRTPGAPAWQESI-RSLGAI---PVAV-NFGEIYTAVQT----RAVDGAELTYANVYNGGLYEVL 216 (327)
T ss_dssp SCCSSGGGGT--TCEEECCSSHHHHHHH-HHHTSE---EECC-CGGGHHHHHHT----TSCSEEEECHHHHHHTTGGGTC
T ss_pred CCCCCHHHHC--CCEEEeCCCHHHHHHH-HHcCCE---eeec-CHHHHHHHHHc----CCeeEEECCHHHHHHcChhhhc
Confidence 6899999998 9998876544445555 444432 2223 56788999999 889999886655421 111223
Q ss_pred cEEEeCCccccCCceeeecCC
Q 003093 669 EFSIVGQVFTKNGWGFAFPRD 689 (848)
Q Consensus 669 ~l~~~~~~~~~~~~~~~~~k~ 689 (848)
++....... .....+++.++
T Consensus 217 ky~~~~~~~-~~~~~~~~n~~ 236 (327)
T 2hpg_A 217 KYMSETGHF-LLINFEIVSAD 236 (327)
T ss_dssp CEEEEEEEE-EEEEEEEEEHH
T ss_pred cEEEecCcc-hhceEEEEeHH
Confidence 444333222 23455666665
No 245
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=62.49 E-value=19 Score=36.91 Aligned_cols=79 Identities=8% Similarity=0.015 Sum_probs=58.1
Q ss_pred EEEEEEEEc--CCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccCC-cHHHHHHHH
Q 003093 73 REVIAIYVD--DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYN-RGPVVFHVA 149 (848)
Q Consensus 73 ~~vaii~~d--d~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~-~~~~~~~~a 149 (848)
++|+++..+ ++|.......+.+++++.|..+..... ..+...-...+..+.+.++|.|++..... .....++++
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~i~~~~~~~vdgiIi~~~~~~~~~~~~~~~ 80 (330)
T 3uug_A 4 GSVGIAMPTKSSARWIDDGNNIVKQLQEAGYKTDLQYA---DDDIPNQLSQIENMVTKGVKVLVIASIDGTTLSDVLKQA 80 (330)
T ss_dssp CEEEEEECCSSSTHHHHHHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHHHHHHHHTCSEEEECCSSGGGGHHHHHHH
T ss_pred cEEEEEeCCCcchHHHHHHHHHHHHHHHcCCEEEEeeC---CCCHHHHHHHHHHHHHcCCCEEEEEcCCchhHHHHHHHH
Confidence 578888854 678888899999999999998876541 22334455667777777899999876543 446678888
Q ss_pred HHcCC
Q 003093 150 QYLGM 154 (848)
Q Consensus 150 ~~~g~ 154 (848)
.+.|+
T Consensus 81 ~~~gi 85 (330)
T 3uug_A 81 GEQGI 85 (330)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 88886
No 246
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=61.16 E-value=14 Score=37.72 Aligned_cols=80 Identities=11% Similarity=0.016 Sum_probs=55.9
Q ss_pred EEEEEEEE--cCCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccCCc-HHHHHHHH
Q 003093 73 REVIAIYV--DDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNR-GPVVFHVA 149 (848)
Q Consensus 73 ~~vaii~~--dd~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~-~~~~~~~a 149 (848)
++|+++.. +++|.......+.+++++.|.++.... +...+...-...+..+.+.++|.|++...... ....++++
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~--~~~~d~~~q~~~i~~li~~~vdgiii~~~~~~~~~~~~~~a 81 (316)
T 1tjy_A 4 ERIAFIPKLVGVGFFTSGGNGAQEAGKALGIDVTYDG--PTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRA 81 (316)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHHHHHHTCEEEECC--CSSCCHHHHHHHHHHHHHTTCSEEEECCSSSSTTHHHHHHH
T ss_pred CEEEEEeCCCCChHHHHHHHHHHHHHHHhCCEEEEEC--CCCCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHH
Confidence 46888864 456777888899999999998876431 22223344556677777789999988765433 35678888
Q ss_pred HHcCC
Q 003093 150 QYLGM 154 (848)
Q Consensus 150 ~~~g~ 154 (848)
++.|.
T Consensus 82 ~~~gi 86 (316)
T 1tjy_A 82 MQRGV 86 (316)
T ss_dssp HHTTC
T ss_pred HHCcC
Confidence 88776
No 247
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=61.14 E-value=10 Score=39.98 Aligned_cols=96 Identities=15% Similarity=0.055 Sum_probs=63.7
Q ss_pred HHHHHHHHcCcEEEEEEEEcCCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccC--
Q 003093 62 AIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY-- 139 (848)
Q Consensus 62 ai~~~~~~~~w~~vaii~~dd~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~-- 139 (848)
.+.++++.+| +++.+|+....+. ...+.+.+.|++.|+++.+ ..+....+.+.+...+..+++.++|+||..+.+
T Consensus 22 ~l~~~l~~~g-~~~livtd~~~~~-~~~~~v~~~L~~~g~~~~~-~~~~ge~~~~~v~~~~~~~~~~~~d~IIavGGGsv 98 (370)
T 1jq5_A 22 KIANYLEGIG-NKTVVIADEIVWK-IAGHTIVNELKKGNIAAEE-VVFSGEASRNEVERIANIARKAEAAIVIGVGGGKT 98 (370)
T ss_dssp GHHHHHTTTC-SEEEEEECHHHHH-HTHHHHHHHHHTTTCEEEE-EECCSSCBHHHHHHHHHHHHHTTCSEEEEEESHHH
T ss_pred HHHHHHHHcC-CeEEEEEChHHHH-HHHHHHHHHHHHcCCeEEE-EeeCCCCCHHHHHHHHHHHHhcCCCEEEEeCChHH
Confidence 3566777788 8998888554333 4678888999999988753 334444455678888888888899999976543
Q ss_pred CcHHHHHHHHHHcCCCCCCeEEEecC
Q 003093 140 NRGPVVFHVAQYLGMLGTGYVWIATS 165 (848)
Q Consensus 140 ~~~~~~~~~a~~~g~~~~~~~wi~~~ 165 (848)
-+...++... .|+ .++-|-|.
T Consensus 99 ~D~aK~iA~~--~~~---p~i~IPTT 119 (370)
T 1jq5_A 99 LDTAKAVADE--LDA---YIVIVPTA 119 (370)
T ss_dssp HHHHHHHHHH--HTC---EEEEEESS
T ss_pred HHHHHHHHHh--cCC---CEEEeccc
Confidence 4555555422 233 45555554
No 248
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=61.10 E-value=13 Score=38.93 Aligned_cols=98 Identities=10% Similarity=-0.001 Sum_probs=64.1
Q ss_pred HHHHHHHHcCcEEEEEEEEcCCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccC--
Q 003093 62 AIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY-- 139 (848)
Q Consensus 62 ai~~~~~~~~w~~vaii~~dd~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~-- 139 (848)
.+.++++.+|.+++.+|+....+. ...+.+.+.|++.|+++......+. .+.+.+... ..+++.++|+||..+.+
T Consensus 24 ~l~~~l~~~g~~~~livtd~~~~~-~~~~~v~~~L~~~g~~~~~~~~~~~-~~~~~v~~~-~~~~~~~~d~IIavGGGsv 100 (354)
T 3ce9_A 24 NIGQIIKKGNFKRVSLYFGEGIYE-LFGETIEKSIKSSNIEIEAVETVKN-IDFDEIGTN-AFKIPAEVDALIGIGGGKA 100 (354)
T ss_dssp GHHHHHGGGTCSEEEEEEETTHHH-HHHHHHHHHHHTTTCEEEEEEEECC-CBHHHHHHH-HTTSCTTCCEEEEEESHHH
T ss_pred HHHHHHHhcCCCeEEEEECccHHH-HHHHHHHHHHHHcCCeEEEEecCCC-CCHHHHHHH-HHhhhcCCCEEEEECChHH
Confidence 356778888888999988655443 4668888999999988754332333 355677777 77778899999977543
Q ss_pred CcHHHHHHHHHHcCCCCCCeEEEecCcc
Q 003093 140 NRGPVVFHVAQYLGMLGTGYVWIATSWL 167 (848)
Q Consensus 140 ~~~~~~~~~a~~~g~~~~~~~wi~~~~~ 167 (848)
-+...++... .|+ .++-|-|...
T Consensus 101 ~D~aK~vA~~--~~~---p~i~IPTT~~ 123 (354)
T 3ce9_A 101 IDAVKYMAFL--RKL---PFISVPTSTS 123 (354)
T ss_dssp HHHHHHHHHH--HTC---CEEEEESCCS
T ss_pred HHHHHHHHhh--cCC---CEEEecCccc
Confidence 4555555422 233 4555655543
No 249
>2xxp_A CPS2A; replication, peptidoglycan, LCP, LYTR; HET: DSL PEG; 1.69A {Streptococcus pneumoniae} PDB: 3tep_A* 3tfl_A* 2xxq_A* 3tel_A* 4de8_A*
Probab=60.91 E-value=8.9 Score=40.79 Aligned_cols=80 Identities=16% Similarity=0.143 Sum_probs=56.6
Q ss_pred ccceeeeeeeeccccCCCCChHHhhcCCCCeeEEeCchHHHHHHh------hhCCCccCcccCCCHHHHHHHhhcCCCCC
Q 003093 575 YTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVNSFARNYLVD------ELNIDESRLVPLNSPEEYAKALKDGPHKG 648 (848)
Q Consensus 575 Yta~L~s~Lt~~~~~~~i~sl~dL~~s~~~i~~~~~s~~~~~l~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 648 (848)
|...-.++++.. .++|++++||. + +|++.++....+... +.+. ..+++.|++..+++.+|.+ |
T Consensus 13 ~~~~~~~vvV~k--ds~i~sl~DLk--g--vgv~~~~~~~~~~~~~~~i~~~~g~-~~~~~~y~~~~~a~~aL~n----G 81 (398)
T 2xxp_A 13 YSEYSLSVAVLA--DSEIENVTQLT--S--VTAPTGTDNENIQKLLADIKSSQNT-DLTVNQSSSYLAAYKSLIA----G 81 (398)
T ss_dssp --CEEEEEEEET--TCSCCSGGGCS--E--EEECTTTSHHHHHHHHHHHHHHSCC-CCEEEECSSHHHHHHHHHT----T
T ss_pred eeEEEEEEEEEC--CCCcCCHHHhc--C--eeeECCCCHHHHHHHHHHHHHhhCC-cceEEecCCHHHHHHHHHc----C
Confidence 333334444443 37999999998 5 999998866655422 1122 1457889999999999999 9
Q ss_pred ceEEEEccHHHHHHHHh
Q 003093 649 GVAAVVDDRAYAELFLS 665 (848)
Q Consensus 649 ~~~a~~~~~~~~~~~~~ 665 (848)
+++|++.+..+...+..
T Consensus 82 ~vDAiv~~~~~~~~le~ 98 (398)
T 2xxp_A 82 ETKAIVLNSVFENIIEL 98 (398)
T ss_dssp SCSCEEEEHHHHHHHHH
T ss_pred CCCEEEEchHHHHHHHh
Confidence 99999999888776654
No 250
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=60.59 E-value=32 Score=35.37 Aligned_cols=80 Identities=8% Similarity=0.022 Sum_probs=56.5
Q ss_pred CcEEEEEEEE--cCCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccCCcHHHHHHH
Q 003093 71 GWREVIAIYV--DDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHV 148 (848)
Q Consensus 71 ~w~~vaii~~--dd~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~~~~~ 148 (848)
.-+.|+++.. ++.|.......+.+++++.|..+..... ..+...-...+..+...++|.|++....... ..+..
T Consensus 61 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~-~~~~~ 136 (339)
T 3h5o_A 61 KSRTVLVLIPSLANTVFLETLTGIETVLDAAGYQMLIGNS---HYDAGQELQLLRAYLQHRPDGVLITGLSHAE-PFERI 136 (339)
T ss_dssp --CEEEEEESCSTTCTTHHHHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHHHHHHTTCCSEEEEECSCCCT-THHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeC---CCChHHHHHHHHHHHcCCCCEEEEeCCCCCH-HHHHH
Confidence 3457888874 4668888999999999999998765322 2233455667788888899999987654333 46667
Q ss_pred HHHcCC
Q 003093 149 AQYLGM 154 (848)
Q Consensus 149 a~~~g~ 154 (848)
+.+.|.
T Consensus 137 l~~~~i 142 (339)
T 3h5o_A 137 LSQHAL 142 (339)
T ss_dssp HHHTTC
T ss_pred HhcCCC
Confidence 777776
No 251
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=59.66 E-value=22 Score=35.49 Aligned_cols=79 Identities=4% Similarity=-0.066 Sum_probs=55.2
Q ss_pred EEEEEEEEc--CCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccCC-cHHHHHHHH
Q 003093 73 REVIAIYVD--DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYN-RGPVVFHVA 149 (848)
Q Consensus 73 ~~vaii~~d--d~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~-~~~~~~~~a 149 (848)
++|+++..+ +.|.......+.+++++.|.++..... ..+...-...+..+...++|.|++..... .....++++
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~~~ 79 (290)
T 2fn9_A 3 GKMAIVISTLNNPWFVVLAETAKQRAEQLGYEATIFDS---QNDTAKESAHFDAIIAAGYDAIIFNPTDADGSIANVKRA 79 (290)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEECCSCTTTTHHHHHHH
T ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEeCC---CCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHHHH
Confidence 467888753 667788889999999999998765422 22334445667777778999999875443 333567777
Q ss_pred HHcCC
Q 003093 150 QYLGM 154 (848)
Q Consensus 150 ~~~g~ 154 (848)
.+.|.
T Consensus 80 ~~~~i 84 (290)
T 2fn9_A 80 KEAGI 84 (290)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 77775
No 252
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=59.53 E-value=25 Score=37.61 Aligned_cols=92 Identities=14% Similarity=0.057 Sum_probs=61.3
Q ss_pred EEEEEEEEcCCCcc--chHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccC------CcHHH
Q 003093 73 REVIAIYVDDDHGR--NGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY------NRGPV 144 (848)
Q Consensus 73 ~~vaii~~dd~~g~--~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~------~~~~~ 144 (848)
++|+|+| .+.||. ..++.+.+.+.+.|++++........ ..++..++..+. +++.|++.+.. +....
T Consensus 266 ~~v~I~Y-~S~yGnTe~mA~~ia~gl~~~Gv~~~~~~~~d~~--~~~~s~i~~~i~--~~~~ivlGspT~~~~~~p~~~~ 340 (410)
T 4dik_A 266 GKVTVIY-DSMYGFVENVMKKAIDSLKEKGFTPVVYKFSDEE--RPAISEILKDIP--DSEALIFGVSTYEAEIHPLMRF 340 (410)
T ss_dssp TEEEEEE-ECSSSHHHHHHHHHHHHHHHTTCEEEEEEECSSC--CCCHHHHHHHST--TCSEEEEEECCTTSSSCHHHHH
T ss_pred cceeeEE-ecccChHHHHHHHHHHHHHhcCCceEEEEeccCC--CCCHHHHHHHHH--hCCeEEEEeCCcCCcCCHHHHH
Confidence 4799999 556764 45789999999999987755444433 256677777764 56788876654 23445
Q ss_pred HHHHHHHcCCCCCCeEEEecCcccc
Q 003093 145 VFHVAQYLGMLGTGYVWIATSWLST 169 (848)
Q Consensus 145 ~~~~a~~~g~~~~~~~wi~~~~~~~ 169 (848)
++.........++....+++-+|+.
T Consensus 341 ~l~~l~~~~~~~K~~~~FGSyGWsg 365 (410)
T 4dik_A 341 TLLEIIDKANYEKPVLVFGVHGWAP 365 (410)
T ss_dssp HHHHHHHHCCCCCEEEEEEECCCCC
T ss_pred HHHHHHhcccCCCEEEEEECCCCCc
Confidence 6777777776555555666666653
No 253
>3onm_A Transcriptional regulator LRHA; LYSR, ROVM, transcription factor, virulence factor; 2.40A {Yersinia pseudotuberculosis}
Probab=59.51 E-value=1.2e+02 Score=28.64 Aligned_cols=81 Identities=12% Similarity=0.109 Sum_probs=55.4
Q ss_pred ceEEEEecCCCCccceEEeCCCcceeeeeHHHHHHHHHhCCCCcceEEeeCCCCCCCCChhHHHHHHhcCeeeEEeecee
Q 003093 376 RHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDIA 455 (848)
Q Consensus 376 ~~lrv~v~~~~~~~p~~~~~~~~~~~G~~~dll~~i~~~l~~~~~~~~~~~~~~~~n~s~~~~i~~l~~g~~D~~~~~~~ 455 (848)
.+||||+... . ...+-.+++..+.++.+ .+++.... ++..+++.+|.+|++|+++....
T Consensus 27 g~l~Ig~~~~--~-----------~~~~l~~~l~~f~~~~P-~i~l~i~~-------~~~~~~~~~L~~g~~Dl~i~~~~ 85 (238)
T 3onm_A 27 GSLIIGASDD--T-----------ADTLLPFLLNRVATLYP-RLAIDVRV-------KRSPFIADMLSSGEVDLAITTAK 85 (238)
T ss_dssp CCEEEEECHH--H-----------HTTHHHHHHHHHHHHCT-TCCEEEEE-------CCHHHHHHHHHHTSCSEEEECSC
T ss_pred eeEEEeccch--h-----------hHHHHHHHHHHHHHHCC-CcEEEEEE-------CCHHHHHHHHHCCCccEEEEecC
Confidence 5789988631 1 12456678888888774 23455543 45889999999999999987432
Q ss_pred eecCceeeeeecccccccceEEEEeccC
Q 003093 456 IITNRTKMADFTQPYIESGLVVVAPVRK 483 (848)
Q Consensus 456 ~t~~R~~~~dfs~p~~~~~~~~v~~~~~ 483 (848)
. . . --+.+.....+++++++..
T Consensus 86 ~-~----~-~~~~~l~~~~~~~v~~~~~ 107 (238)
T 3onm_A 86 V-D----S-HPHVILRTSPTLWYCSVDY 107 (238)
T ss_dssp C------C-CCEEEEEEECEEEEEETTC
T ss_pred C-C----C-cceEEeecCCEEEEEcCCC
Confidence 1 1 1 2356778888999988765
No 254
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=59.44 E-value=36 Score=33.85 Aligned_cols=80 Identities=4% Similarity=-0.117 Sum_probs=54.1
Q ss_pred CcEEEEEEEEc----CCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccCCcHHHHH
Q 003093 71 GWREVIAIYVD----DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVF 146 (848)
Q Consensus 71 ~w~~vaii~~d----d~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~~~ 146 (848)
.-.+|+++..+ ++|.......+.+++++.|.++.... ...+.......+..+...++|.|++....... ..+
T Consensus 18 ~~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~-~~~ 93 (296)
T 3brq_A 18 STQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLAD---GKHSAEEERQAIQYLLDLRCDAIMIYPRFLSV-DEI 93 (296)
T ss_dssp -CCEEEEEECGGGCC--CHHHHHHHHHHHHHHTTCEEEEEC---CTTSHHHHHHHHHHHHHTTCSEEEEECSSSCH-HHH
T ss_pred CCceEEEEeCCcccCCchHHHHHHHHHHHHHHCCCEEEEEe---CCCCHHHHHHHHHHHHhcCCCEEEEecCCCCh-HHH
Confidence 34578888754 56888889999999999999876542 22233445566777777899999987654332 456
Q ss_pred HHHHH-cCC
Q 003093 147 HVAQY-LGM 154 (848)
Q Consensus 147 ~~a~~-~g~ 154 (848)
+.+.+ .|.
T Consensus 94 ~~l~~~~~i 102 (296)
T 3brq_A 94 DDIIDAHSQ 102 (296)
T ss_dssp HHHHHTCSS
T ss_pred HHHHhcCCC
Confidence 66776 665
No 255
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=58.99 E-value=48 Score=26.11 Aligned_cols=38 Identities=29% Similarity=0.361 Sum_probs=22.1
Q ss_pred CceEeccCChHHHHHHHHHHHHHcCcEEEEEEEEcCCC
Q 003093 47 PYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDH 84 (848)
Q Consensus 47 p~f~r~~p~d~~q~~ai~~~~~~~~w~~vaii~~dd~~ 84 (848)
.+-.|+..+....-..+-++++.|+.+-|.++.+|.+|
T Consensus 26 gfkvrtvrspqelkdsieelvkkynativvvvvddkew 63 (134)
T 2l69_A 26 GFKVRTVRSPQELKDSIEELVKKYNATIVVVVVDDKEW 63 (134)
T ss_dssp TCEEEEECSHHHHHHHHHHHTTCCCCEEEEEECSSHHH
T ss_pred CceEEEecCHHHHHHHHHHHHHHhCCeEEEEEEccHHH
Confidence 34566666666666666666666665555555444443
No 256
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=58.78 E-value=19 Score=35.97 Aligned_cols=79 Identities=6% Similarity=0.000 Sum_probs=56.1
Q ss_pred cEEEEEEEEc-------CCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccCCcHHH
Q 003093 72 WREVIAIYVD-------DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPV 144 (848)
Q Consensus 72 w~~vaii~~d-------d~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~ 144 (848)
-+.|+++..+ +.|.......+.+++++.|..+... ....+.......+..+.+.++|.|++...... ..
T Consensus 8 ~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~-~~ 83 (292)
T 3k4h_A 8 TKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVEGYALYMS---TGETEEEIFNGVVKMVQGRQIGGIILLYSREN-DR 83 (292)
T ss_dssp CCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHTTCEEEEC---CCCSHHHHHHHHHHHHHTTCCCEEEESCCBTT-CH
T ss_pred CCEEEEEecCCccccccCHHHHHHHHHHHHHHHHcCCEEEEE---eCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCC-hH
Confidence 3578888755 5677888999999999999987653 22222344456677788889999998654433 25
Q ss_pred HHHHHHHcCC
Q 003093 145 VFHVAQYLGM 154 (848)
Q Consensus 145 ~~~~a~~~g~ 154 (848)
.++.+.+.|+
T Consensus 84 ~~~~l~~~~i 93 (292)
T 3k4h_A 84 IIQYLHEQNF 93 (292)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHCCC
Confidence 7777888776
No 257
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=58.52 E-value=20 Score=36.08 Aligned_cols=81 Identities=10% Similarity=-0.011 Sum_probs=58.1
Q ss_pred EEEEEEEEc--CCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccC-CcHHHHHHHH
Q 003093 73 REVIAIYVD--DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY-NRGPVVFHVA 149 (848)
Q Consensus 73 ~~vaii~~d--d~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~-~~~~~~~~~a 149 (848)
.+|+++..+ ++|.......+.+++++.|.++.....-.. .+...-...+..+.+.++|.|++.... ......++++
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~-~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~~ 82 (297)
T 3rot_A 4 DKYYLITHGSQDPYWTSLFQGAKKAAEELKVDLQILAPPGA-NDVPKQVQFIESALATYPSGIATTIPSDTAFSKSLQRA 82 (297)
T ss_dssp CEEEEECSCCCSHHHHHHHHHHHHHHHHHTCEEEEECCSSS-CCHHHHHHHHHHHHHTCCSEEEECCCCSSTTHHHHHHH
T ss_pred EEEEEEecCCCCchHHHHHHHHHHHHHHhCcEEEEECCCCc-CCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHH
Confidence 357777644 678888899999999999999876532111 133555677888888899999886543 4446678888
Q ss_pred HHcCC
Q 003093 150 QYLGM 154 (848)
Q Consensus 150 ~~~g~ 154 (848)
.+.|+
T Consensus 83 ~~~gi 87 (297)
T 3rot_A 83 NKLNI 87 (297)
T ss_dssp HHHTC
T ss_pred HHCCC
Confidence 88886
No 258
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=57.38 E-value=42 Score=33.43 Aligned_cols=79 Identities=4% Similarity=0.051 Sum_probs=53.0
Q ss_pred cEEEEEEEEc--C--CCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccCCcHHHHHH
Q 003093 72 WREVIAIYVD--D--DHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFH 147 (848)
Q Consensus 72 w~~vaii~~d--d--~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~~~~ 147 (848)
-+.|+++..+ + .|.......+.+++++.|..+.....-. +.......+..+...++|.||+...... ...++
T Consensus 8 s~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~---~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~~~~ 83 (288)
T 3gv0_A 8 TNVIALVLSVDEELMGFTSQMVFGITEVLSTTQYHLVVTPHIH---AKDSMVPIRYILETGSADGVIISKIEPN-DPRVR 83 (288)
T ss_dssp CCEEEEECBCCCCSSCHHHHHHHHHHHHHTTSSCEEEECCBSS---GGGTTHHHHHHHHHTCCSEEEEESCCTT-CHHHH
T ss_pred CCEEEEEecCCccccHHHHHHHHHHHHHHHHcCCEEEEecCCc---chhHHHHHHHHHHcCCccEEEEecCCCC-cHHHH
Confidence 3578888864 3 6788889999999999999887543221 1122334444566688999998754322 25677
Q ss_pred HHHHcCC
Q 003093 148 VAQYLGM 154 (848)
Q Consensus 148 ~a~~~g~ 154 (848)
.+.+.|+
T Consensus 84 ~l~~~~i 90 (288)
T 3gv0_A 84 FMTERNM 90 (288)
T ss_dssp HHHHTTC
T ss_pred HHhhCCC
Confidence 7777776
No 259
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=56.91 E-value=21 Score=35.18 Aligned_cols=80 Identities=3% Similarity=-0.044 Sum_probs=56.7
Q ss_pred EEEEEEE--cCCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCC-CeEEEEEcc-CCcHHHHHHHH
Q 003093 74 EVIAIYV--DDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTE-SRIIVVHTH-YNRGPVVFHVA 149 (848)
Q Consensus 74 ~vaii~~--dd~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~-~~viv~~~~-~~~~~~~~~~a 149 (848)
+|+++.. +++|.......+.+++++.|.++.....- ...+.......+..+.+.+ +|.|++... .......++++
T Consensus 2 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~-~~~~~~~~~~~i~~l~~~~~vdgii~~~~~~~~~~~~~~~~ 80 (276)
T 3ksm_A 2 KLLLVLKGDSNAYWRQVYLGAQKAADEAGVTLLHRSTK-DDGDIAGQIQILSYHLSQAPPDALILAPNSAEDLTPSVAQY 80 (276)
T ss_dssp EEEEECSCSSSTHHHHHHHHHHHHHHHHTCEEEECCCS-STTCHHHHHHHHHHHHHHSCCSEEEECCSSTTTTHHHHHHH
T ss_pred eEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEECCC-CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCHHHHHHHHHHH
Confidence 5677763 46678888999999999999988754321 1223344556677777778 999998764 34556788888
Q ss_pred HHcCC
Q 003093 150 QYLGM 154 (848)
Q Consensus 150 ~~~g~ 154 (848)
.+.|.
T Consensus 81 ~~~~i 85 (276)
T 3ksm_A 81 RARNI 85 (276)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 88886
No 260
>3l6g_A Betaine ABC transporter permease and substrate BI protein; glycine betaine binding, substrate binding domain, venus FLY cell membrane; HET: B3P; 1.90A {Lactococcus lactis} PDB: 3l6h_A
Probab=56.86 E-value=22 Score=35.14 Aligned_cols=41 Identities=20% Similarity=0.191 Sum_probs=31.2
Q ss_pred eeHHHHHHHHHhCCCCcceEEeeCCCCCCCCChhHHHHHHhcCeeeEEee
Q 003093 403 FCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVG 452 (848)
Q Consensus 403 ~~~dll~~i~~~l~~~~~~~~~~~~~~~~n~s~~~~i~~l~~g~~D~~~~ 452 (848)
+..+|++.+.+.+|+++++. + ++-.-+...|.+|++|+...
T Consensus 16 i~~~i~~~~Le~~G~~Ve~~--~-------~~~~~~~~al~~G~iD~~~e 56 (256)
T 3l6g_A 16 ASINVLTQAMKEHGFDVKTT--A-------LDNAVAWQTVANGQADGMVS 56 (256)
T ss_dssp HHHHHHHHHHHHTTEEEEEE--E-------CCHHHHHHHHHTTSSSEEEE
T ss_pred HHHHHHHHHHHHCCCceEEE--E-------CChHHHHHHHHCCCCeEEEc
Confidence 45677888888889886654 3 23566789999999999876
No 261
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=56.16 E-value=9.1 Score=39.54 Aligned_cols=60 Identities=18% Similarity=0.155 Sum_probs=49.8
Q ss_pred CCCcchhhhhHHHHhhhcC--ccccc--cchhHHHHHHHHhhhhhhhccccceeeeeeeecccc
Q 003093 530 KRQVVTIFWFSFSTMFFAH--KEKTV--SALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLS 589 (848)
Q Consensus 530 ~~~~~~~~~~~~~~l~~~~--~~~p~--s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~ 589 (848)
..++..++||++.++...| .-.|. +..+|++..+-.+.++++.+.-++-+.+-++.+...
T Consensus 89 ~~sf~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~srp~~r 152 (340)
T 3sya_A 89 LNGFVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQPKKR 152 (340)
T ss_dssp CCSTTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGG
T ss_pred ccCHHHHHhhhheeeeeecCCCccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhc
Confidence 3578999999999999665 33564 677999999999999999999999998888776654
No 262
>1h3d_A ATP-phosphoribosyltransferase; hisitidine biosynthesis, glycosyltransferase; HET: AMP TLA; 2.7A {Escherichia coli} SCOP: c.94.1.1 d.58.5.3 PDB: 1q1k_A*
Probab=56.14 E-value=38 Score=34.14 Aligned_cols=101 Identities=16% Similarity=0.119 Sum_probs=59.8
Q ss_pred CCCChHHhhcCCCCeeEEeCchHHHHHHhhhCCCccCcccCCCHHHHHHHhhcCCCCCceEEEEccHHHHHHHHhcCCcE
Q 003093 591 PIKGIDSLRSSNYPIGYQVNSFARNYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRCEF 670 (848)
Q Consensus 591 ~i~sl~dL~~s~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l 670 (848)
.+.++++|. +++|++.--.....||. +.+.. ..++...-.-|..-.+ |-.|++++-.....-+.++ +|
T Consensus 115 ~~~~~~~l~--g~RIATkyp~l~~~yf~-~~gi~-~~ii~l~GsvE~aP~~------GlADaIvDivsTG~TLraN--gL 182 (299)
T 1h3d_A 115 AWDGPLSLN--GKRIATSYPHLLKRYLD-QKGIS-FKSCLLNGSVEVAPRA------GLADAICDLVSTGATLEAN--GL 182 (299)
T ss_dssp CCCCGGGGT--TCEEEESCHHHHHHHHH-HHTCC-CEEEECSSCTTHHHHT------TSCSEEEEEESSCHHHHHT--TE
T ss_pred CCCChHHhC--CCEEEeCcHHHHHHHHH-HcCCc-EEEEECCCceeeccCC------CccceEEecccCHHHHHHC--CC
Confidence 456677776 78888877777888884 44554 3444443333333333 5667888866555554444 47
Q ss_pred EEeCCccccCCceeeecCCC--Cc-hHHHHHHHHhhh
Q 003093 671 SIVGQVFTKNGWGFAFPRDS--PL-AVDISTAILKLS 704 (848)
Q Consensus 671 ~~~~~~~~~~~~~~~~~k~s--pl-~~~in~~i~~l~ 704 (848)
..++..+ ...-.+...+.+ +. .+.++..+.+|.
T Consensus 183 ~~ie~I~-~SsA~LI~n~~s~~~~k~~~i~~l~~rl~ 218 (299)
T 1h3d_A 183 REVEVIY-RSKACLIQRDGEMEESKQQLIDKLLTRIQ 218 (299)
T ss_dssp EEEEEEE-EECEEEEEESSCCCHHHHHHHHHHHHHHH
T ss_pred EEeEEEE-eeEEEEEEeccccChhHHHHHHHHHHHHH
Confidence 7775444 444455566665 22 245666666664
No 263
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=55.89 E-value=38 Score=34.74 Aligned_cols=82 Identities=11% Similarity=0.057 Sum_probs=54.6
Q ss_pred EEEEEEEEc---CCCccchHHHHHHHHhccCcEEEEeeecCC-CCChHHHHHHHHHHhcCCCeEEEEEccCCcHHHHHHH
Q 003093 73 REVIAIYVD---DDHGRNGIAALGDTLAAKRCRISFKAPLSV-EATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHV 148 (848)
Q Consensus 73 ~~vaii~~d---d~~g~~~~~~l~~~l~~~g~~v~~~~~~~~-~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~~~~~ 148 (848)
+.|+++..+ ++|.......+.+++++.|..+.....-.. ..+...-...+..+...++|.|++..........+++
T Consensus 44 ~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~ 123 (342)
T 1jx6_A 44 IKISVVYPGQQVSDYWVRNIASFEKRLYKLNINYQLNQVFTRPNADIKQQSLSLMEALKSKSDYLIFTLDTTRHRKFVEH 123 (342)
T ss_dssp EEEEEEECCCSSCCHHHHHHHHHHHHHHHTTCCEEEEEEECCTTCCHHHHHHHHHHHHHTTCSEEEECCSSSTTHHHHHH
T ss_pred eEEEEEecCCcccHHHHHHHHHHHHHHHHcCCeEEEEecCCCCccCHHHHHHHHHHHHhcCCCEEEEeCChHhHHHHHHH
Confidence 478888754 577788889999999999987654321111 0123444566777777889999994433333456777
Q ss_pred HHHcCC
Q 003093 149 AQYLGM 154 (848)
Q Consensus 149 a~~~g~ 154 (848)
+.+.|.
T Consensus 124 ~~~~~i 129 (342)
T 1jx6_A 124 VLDSTN 129 (342)
T ss_dssp HHHHCS
T ss_pred HHHcCC
Confidence 777775
No 264
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=55.77 E-value=36 Score=31.08 Aligned_cols=68 Identities=6% Similarity=0.041 Sum_probs=50.0
Q ss_pred cCcEEEEEEEEcCCCcc---chHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhc-CCCeEEEEEccC
Q 003093 70 YGWREVIAIYVDDDHGR---NGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVAL-TESRIIVVHTHY 139 (848)
Q Consensus 70 ~~w~~vaii~~dd~~g~---~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~-~~~~viv~~~~~ 139 (848)
|.--++++|...|+-|+ .....+...+++.|+++.....++.+ .+++...|.+..+ .++|+|+..+..
T Consensus 11 ~~~~rv~Ii~tGdElg~i~Dsn~~~l~~~L~~~G~~v~~~~iv~Dd--~~~i~~~l~~~~~~~~~DlVittGG~ 82 (169)
T 1y5e_A 11 PKEVRCKIVTISDTRTEETDKSGQLLHELLKEAGHKVTSYEIVKDD--KESIQQAVLAGYHKEDVDVVLTNGGT 82 (169)
T ss_dssp -CCCEEEEEEECSSCCTTTCHHHHHHHHHHHHHTCEEEEEEEECSS--HHHHHHHHHHHHTCTTCSEEEEECCC
T ss_pred ccCCEEEEEEEcCccCeeccChHHHHHHHHHHCCCeEeEEEEeCCC--HHHHHHHHHHHHhcCCCCEEEEcCCC
Confidence 34458999987776542 34567888999999999888777753 4778888888765 379999988654
No 265
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=55.50 E-value=18 Score=36.60 Aligned_cols=84 Identities=5% Similarity=0.009 Sum_probs=56.6
Q ss_pred HHHcCcEEEEEEEEc-------CCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccC
Q 003093 67 VDHYGWREVIAIYVD-------DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY 139 (848)
Q Consensus 67 ~~~~~w~~vaii~~d-------d~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~ 139 (848)
++.-.-+.|+++..+ +.|.......+.+++++.|..+... ....+.......+..+...++|.|++....
T Consensus 17 L~~~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~---~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 93 (305)
T 3huu_A 17 LITNKTLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVRGYSTRMT---VSENSGDLYHEVKTMIQSKSVDGFILLYSL 93 (305)
T ss_dssp ----CCCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHHTCEEEEC---CCSSHHHHHHHHHHHHHTTCCSEEEESSCB
T ss_pred hhhCCCCEEEEEeCCCccccccCcHHHHHHHHHHHHHHHCCCEEEEE---eCCCChHHHHHHHHHHHhCCCCEEEEeCCc
Confidence 333445678888765 5577788899999999999987753 222222344566777888899999987544
Q ss_pred CcHHHHHHHHHHcCC
Q 003093 140 NRGPVVFHVAQYLGM 154 (848)
Q Consensus 140 ~~~~~~~~~a~~~g~ 154 (848)
.. ...+..+.+.|+
T Consensus 94 ~~-~~~~~~l~~~~i 107 (305)
T 3huu_A 94 KD-DPIEHLLNEFKV 107 (305)
T ss_dssp TT-CHHHHHHHHTTC
T ss_pred CC-cHHHHHHHHcCC
Confidence 33 256777877776
No 266
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=55.43 E-value=28 Score=35.14 Aligned_cols=80 Identities=8% Similarity=-0.044 Sum_probs=55.3
Q ss_pred CcEEEEEEEEc--CCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccCCcHHHHHHH
Q 003093 71 GWREVIAIYVD--DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHV 148 (848)
Q Consensus 71 ~w~~vaii~~d--d~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~~~~~ 148 (848)
.-+.|+++..+ +.|.......+.+++++.|..+.....- .+...-...+..+.+.++|.||+..........+..
T Consensus 14 ~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~---~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~ 90 (303)
T 3kke_A 14 RSGTIGLIVPDVNNAVFADMFSGVQMAASGHSTDVLLGQID---APPRGTQQLSRLVSEGRVDGVLLQRREDFDDDMLAA 90 (303)
T ss_dssp ---CEEEEESCTTSTTHHHHHHHHHHHHHHTTCCEEEEECC---STTHHHHHHHHHHHSCSSSEEEECCCTTCCHHHHHH
T ss_pred CCCEEEEEeCCCcChHHHHHHHHHHHHHHHCCCEEEEEeCC---CChHHHHHHHHHHHhCCCcEEEEecCCCCcHHHHHH
Confidence 34568888743 5688888999999999999988754321 223455667888888999999987654443226666
Q ss_pred HHHcCC
Q 003093 149 AQYLGM 154 (848)
Q Consensus 149 a~~~g~ 154 (848)
+.+ |+
T Consensus 91 l~~-~i 95 (303)
T 3kke_A 91 VLE-GV 95 (303)
T ss_dssp HHT-TS
T ss_pred HhC-CC
Confidence 766 75
No 267
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=54.89 E-value=36 Score=31.49 Aligned_cols=67 Identities=9% Similarity=-0.016 Sum_probs=48.6
Q ss_pred cCcEEEEEEEEcCC----------CccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcC-CCeEEEEEcc
Q 003093 70 YGWREVIAIYVDDD----------HGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALT-ESRIIVVHTH 138 (848)
Q Consensus 70 ~~w~~vaii~~dd~----------~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~-~~~viv~~~~ 138 (848)
+.--+|++|...|+ .-......+...+++.|.++.....++.+ .+++...|.+..+. ++|+|+..+.
T Consensus 13 ~~~~rv~IittGde~~~~~~~~G~i~Dsn~~~L~~~l~~~G~~v~~~~iv~Dd--~~~I~~al~~a~~~~~~DlVittGG 90 (178)
T 2pjk_A 13 PKSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDD--KIKILKAFTDALSIDEVDVIISTGG 90 (178)
T ss_dssp CCCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSC--HHHHHHHHHHHHTCTTCCEEEEESC
T ss_pred CCCCEEEEEEeCcccccccccCCeEeehHHHHHHHHHHHCCCEEEEEEEeCCC--HHHHHHHHHHHHhcCCCCEEEECCC
Confidence 34457888886642 22445677889999999999888777753 47788888877654 5999998864
No 268
>3cij_A UPF0100 protein AF_0094; archaeal periplasmic binding protein, unknown function, metal binding protein, transport protein; 1.07A {Archaeoglobus fulgidus} PDB: 2ons_A 2onk_E 2onr_A
Probab=54.58 E-value=1.7e+02 Score=28.99 Aligned_cols=70 Identities=13% Similarity=0.046 Sum_probs=45.0
Q ss_pred HHHHHHHHHhC-CCCcceEEeeCCCCCCCCChhHHHHHHhc-Ce-eeEEeeceee--ec-CceeeeeecccccccceEEE
Q 003093 405 IDVFTAAINLL-PYAVPYKLIPFGDGHNNPSCTELVRLITA-GV-YDAAVGDIAI--IT-NRTKMADFTQPYIESGLVVV 478 (848)
Q Consensus 405 ~dll~~i~~~l-~~~~~~~~~~~~~~~~n~s~~~~i~~l~~-g~-~D~~~~~~~~--t~-~R~~~~dfs~p~~~~~~~~v 478 (848)
-++++.+.++. |.++++.. ++...++.++.+ |. +|+.+..-.. .. .....++...||....++++
T Consensus 20 ~~l~~~F~~~~~gi~V~~~~---------~~s~~l~~~i~~~g~~~Dv~~~a~~~~~~~l~~~gl~~~~~~~~~~~lvl~ 90 (295)
T 3cij_A 20 KAFKRAFEEKHPNVEVQTEA---------AGSAATIRKVTELGRKADVIATADYTLIQKMMYPEFANWTIMFAKNQIVLA 90 (295)
T ss_dssp HHHHHHHHHHCTTCEEEEEE---------ECHHHHHHHHHTSCCCCSEEEESSTHHHHHHHTTTTCCCCEEEEECCEEEE
T ss_pred HHHHHHHHHHCCCceEEEEe---------CcHHHHHHHHHhCCCCCCEEEEcChhhHHHHHhCCCcceeeEEEeeeEEEE
Confidence 45777777774 88866644 346678888888 75 9998763211 11 11222345667888889999
Q ss_pred EeccC
Q 003093 479 APVRK 483 (848)
Q Consensus 479 ~~~~~ 483 (848)
+++..
T Consensus 91 ~~~~~ 95 (295)
T 3cij_A 91 YRNDS 95 (295)
T ss_dssp ECTTS
T ss_pred EeCCC
Confidence 88664
No 269
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=54.43 E-value=29 Score=34.91 Aligned_cols=78 Identities=9% Similarity=-0.023 Sum_probs=57.6
Q ss_pred EEEEEEEEc--CCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccCC-cHHHHHHHH
Q 003093 73 REVIAIYVD--DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYN-RGPVVFHVA 149 (848)
Q Consensus 73 ~~vaii~~d--d~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~-~~~~~~~~a 149 (848)
.+|+++..+ ++|.....+.+.+++++.|..+..... . +.......++.+.+.++|.|++..... .....++++
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~-~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~~ 78 (306)
T 8abp_A 3 LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAV---P-DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKA 78 (306)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHHHTEEEEEEEC---C-SHHHHHHHHHHHHHTTCCEEEEECSCGGGHHHHHHHH
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHHcCCEEEEeCC---C-CHHHHHHHHHHHHHcCCCEEEEeCCCchhhHHHHHHH
Confidence 367888744 567788889999999999998875433 1 335566778888888999999886543 445568888
Q ss_pred HHcCC
Q 003093 150 QYLGM 154 (848)
Q Consensus 150 ~~~g~ 154 (848)
++.|+
T Consensus 79 ~~~~i 83 (306)
T 8abp_A 79 RGYDM 83 (306)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 88876
No 270
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=54.30 E-value=34 Score=34.14 Aligned_cols=78 Identities=12% Similarity=-0.050 Sum_probs=54.5
Q ss_pred EEEEEEEEc--CCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccCCcHHHHHHHHH
Q 003093 73 REVIAIYVD--DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQ 150 (848)
Q Consensus 73 ~~vaii~~d--d~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~~~~~a~ 150 (848)
+.|+++..+ ++|.......+.+++++.|..+.... ...+.......++.+...++|.|++...... ...++.+.
T Consensus 17 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~---~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~~~~~l~ 92 (289)
T 2fep_A 17 TTVGVIIPDISSIFYSELARGIEDIATMYKYNIILSN---SDQNMEKELHLLNTMLGKQVDGIVFMGGNIT-DEHVAEFK 92 (289)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEE---CTTCHHHHHHHHHHHHHTTCSEEEECCSCCC-HHHHHHHH
T ss_pred CeEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEe---CCCCHHHHHHHHHHHHhCCCCEEEEecCCCC-HHHHHHHH
Confidence 478888854 56777888999999999999876542 1223344556677777889999998764332 34566777
Q ss_pred HcCC
Q 003093 151 YLGM 154 (848)
Q Consensus 151 ~~g~ 154 (848)
+.|.
T Consensus 93 ~~~i 96 (289)
T 2fep_A 93 RSPV 96 (289)
T ss_dssp HSSS
T ss_pred hcCC
Confidence 7675
No 271
>3cfx_A UPF0100 protein MA_0280; ABC transporter, binding protein, molybdate, tungstate, LIGA unknown function, transport protein; 1.60A {Methanosarcina acetivorans}
Probab=54.13 E-value=1.8e+02 Score=28.96 Aligned_cols=70 Identities=13% Similarity=0.057 Sum_probs=44.7
Q ss_pred HHHHHHHHHh-CCCCcceEEeeCCCCCCCCChhHHHHHHhc-Ce-eeEEeeceee--e-cCceeeeeecccccccceEEE
Q 003093 405 IDVFTAAINL-LPYAVPYKLIPFGDGHNNPSCTELVRLITA-GV-YDAAVGDIAI--I-TNRTKMADFTQPYIESGLVVV 478 (848)
Q Consensus 405 ~dll~~i~~~-l~~~~~~~~~~~~~~~~n~s~~~~i~~l~~-g~-~D~~~~~~~~--t-~~R~~~~dfs~p~~~~~~~~v 478 (848)
-++++.+.++ -|.++++.. ++-..++.++.+ |. +|+.+..-.. . ......++...||....++++
T Consensus 20 ~~l~~~F~~~~~gi~V~~~~---------~~s~~l~~~i~~~g~~~Dv~~~a~~~~~~~l~~~gl~~~~~~~~~~~l~i~ 90 (296)
T 3cfx_A 20 EELEAEFEAQHPGVDVQREA---------AGSAQSVRKITELGKKADVLASADYALIPSLMVPEYADWYAAFARNQMILA 90 (296)
T ss_dssp HHHHHHHHHHSTTCEEEEEE---------CCHHHHHHHHHTSCCCCSEEEESSTTHHHHHTTTTTCSCEEEEEECCEEEE
T ss_pred HHHHHHHHHHCCCceEEEEe---------CchHHHHHHHHhCCCCCcEEEECChhhHHHHHhCCCccceeeeEeeeEEEE
Confidence 4677777777 487765543 346678888888 65 9998763211 1 112223345567788888888
Q ss_pred EeccC
Q 003093 479 APVRK 483 (848)
Q Consensus 479 ~~~~~ 483 (848)
+++..
T Consensus 91 ~~~~~ 95 (296)
T 3cfx_A 91 YTNES 95 (296)
T ss_dssp ECTTS
T ss_pred EeCCC
Confidence 87654
No 272
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=53.51 E-value=19 Score=36.21 Aligned_cols=81 Identities=10% Similarity=0.022 Sum_probs=54.5
Q ss_pred CcEEEEEEEEc--CCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccCCcHHHHHHH
Q 003093 71 GWREVIAIYVD--DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHV 148 (848)
Q Consensus 71 ~w~~vaii~~d--d~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~~~~~ 148 (848)
.-+.|+++..+ +.|.......+.+++++.|..+..... ..+...-...+..+...++|.|++.........+++.
T Consensus 19 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~~~~ 95 (293)
T 2iks_A 19 RTRSIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACS---EDQPDNEMRCIEHLLQRQVDAIIVSTSLPPEHPFYQR 95 (293)
T ss_dssp CCCEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEECCSSCTTCHHHHT
T ss_pred CCcEEEEEeCCCcCcHHHHHHHHHHHHHHHCCCEEEEEcC---CCCHHHHHHHHHHHHHcCCCEEEEeCCCCCcHHHHHH
Confidence 34578888753 567778889999999999998875422 1233444566777777899999987654333335566
Q ss_pred HHHcCC
Q 003093 149 AQYLGM 154 (848)
Q Consensus 149 a~~~g~ 154 (848)
+.+.|.
T Consensus 96 ~~~~~i 101 (293)
T 2iks_A 96 WANDPF 101 (293)
T ss_dssp TTTSSS
T ss_pred HHhCCC
Confidence 655554
No 273
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=53.46 E-value=39 Score=35.04 Aligned_cols=80 Identities=10% Similarity=0.024 Sum_probs=55.7
Q ss_pred CcEEEEEEEEc--CCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccCCcHHHHHHH
Q 003093 71 GWREVIAIYVD--DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHV 148 (848)
Q Consensus 71 ~w~~vaii~~d--d~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~~~~~ 148 (848)
.-+.|+++..+ +.|.......+.+++++.|..+..... ..+...-...+..+...++|.||+...... ...+..
T Consensus 69 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~-~~~~~~ 144 (355)
T 3e3m_A 69 RSGFVGLLLPSLNNLHFAQTAQSLTDVLEQGGLQLLLGYT---AYSPEREEQLVETMLRRRPEAMVLSYDGHT-EQTIRL 144 (355)
T ss_dssp --CEEEEEESCSBCHHHHHHHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHHHHHHHTCCSEEEEECSCCC-HHHHHH
T ss_pred CCCEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeC---CCChHHHHHHHHHHHhCCCCEEEEeCCCCC-HHHHHH
Confidence 34578888743 556777889999999999998865422 123344556777788889999998765443 356777
Q ss_pred HHHcCC
Q 003093 149 AQYLGM 154 (848)
Q Consensus 149 a~~~g~ 154 (848)
+.+.|+
T Consensus 145 l~~~~i 150 (355)
T 3e3m_A 145 LQRASI 150 (355)
T ss_dssp HHHCCS
T ss_pred HHhCCC
Confidence 777776
No 274
>3isp_A HTH-type transcriptional regulator RV1985C/MT2039; ROD shaped structure, DNA binding domain, regulatory domain, DNA-binding; 2.70A {Mycobacterium tuberculosis}
Probab=53.32 E-value=58 Score=32.47 Aligned_cols=47 Identities=21% Similarity=0.052 Sum_probs=32.5
Q ss_pred CChhHHHHHHhcCeeeEEeeceeeecCceeeeeecccccccceEEEEeccC
Q 003093 433 PSCTELVRLITAGVYDAAVGDIAIITNRTKMADFTQPYIESGLVVVAPVRK 483 (848)
Q Consensus 433 ~s~~~~i~~l~~g~~D~~~~~~~~t~~R~~~~dfs~p~~~~~~~~v~~~~~ 483 (848)
++...+++.|.+|++|+++........ .+ -..|.....+++++++..
T Consensus 127 ~~~~~~~~~l~~g~~D~~i~~~~~~~~---~l-~~~~l~~~~~~~v~~~~~ 173 (303)
T 3isp_A 127 EDQDHSARLLREGVAMGAVTTERNPVP---GC-RVHPLGEMRYLPVASRPF 173 (303)
T ss_dssp CCHHHHHHHHHTTSCSEEEESCCSCCT---TE-EEEEEEEEEEEEEECHHH
T ss_pred cChHHHHHHHHcCcceEEEecCCCCCC---Ce-EEEEccceeEEEEecchH
Confidence 457789999999999999874322211 22 246777888888887653
No 275
>2xwv_A Sialic acid-binding periplasmic protein SIAP; transport protein, trap, sugar transport; HET: SLB; 1.05A {Haemophilus influenzae} PDB: 2xxk_A* 2xa5_A* 2wyp_A* 2wx9_A* 2xwo_A* 2xwk_A* 2v4c_A* 2wyk_A* 2xwi_A* 3b50_A* 2cey_A 2cex_A
Probab=53.25 E-value=23 Score=36.23 Aligned_cols=60 Identities=15% Similarity=0.155 Sum_probs=42.8
Q ss_pred CCCCChHHhhcCCCCeeEEeCchHHHHHHhhhCCCccCcccCCCHHHHHHHhhcCCCCCceEEEEccHHHH
Q 003093 590 SPIKGIDSLRSSNYPIGYQVNSFARNYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYA 660 (848)
Q Consensus 590 ~~i~sl~dL~~s~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~ 660 (848)
.+|++++||. |++|.+..+......+ +.++.. .++. ...|...+|++ |.+|+.....+.+
T Consensus 133 ~pI~s~~Dlk--GlKiRv~~~~~~~~~~-~alGa~---pv~m-~~~Evy~ALq~----G~vDg~~~~~~~~ 192 (312)
T 2xwv_A 133 RAINSIADMK--GLKLRVPNAATNLAYA-KYVGAS---PTPM-AFSEVYLALQT----NAVDGQENPLAAV 192 (312)
T ss_dssp SCCCSGGGGT--TCEEEECSCHHHHHHH-HHHTCE---EEEC-CGGGHHHHHHT----TSSSEEEEEHHHH
T ss_pred CCcCCHHHhC--CCEEEeCCCHHHHHHH-HHcCCe---eeec-CHHHHHHHHHc----CCcceEeccHHHH
Confidence 6899999998 9999887644334555 344432 2223 56788899999 8899988877665
No 276
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=52.58 E-value=38 Score=34.06 Aligned_cols=79 Identities=9% Similarity=0.038 Sum_probs=54.7
Q ss_pred EEEEEEEE--cCCCccchHHHHHHHHhccCc-EEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccCCc-HHHHHHH
Q 003093 73 REVIAIYV--DDDHGRNGIAALGDTLAAKRC-RISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNR-GPVVFHV 148 (848)
Q Consensus 73 ~~vaii~~--dd~~g~~~~~~l~~~l~~~g~-~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~-~~~~~~~ 148 (848)
++|+++.. ++.|.......+.+++++.|. ++..... ..+.......+..+...++|.|++...... ....+++
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~~~ 79 (309)
T 2fvy_A 3 TRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDS---QNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEK 79 (309)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHTCTTEEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEECCSSGGGHHHHHHH
T ss_pred cEEEEEeccCCcHHHHHHHHHHHHHHHhcCCeEEEEecC---CCCHHHHHHHHHHHHHcCCCEEEEeCCCcchhHHHHHH
Confidence 46788874 356777888999999999997 7765422 123344456677777789999998764433 3457778
Q ss_pred HHHcCC
Q 003093 149 AQYLGM 154 (848)
Q Consensus 149 a~~~g~ 154 (848)
+.+.|+
T Consensus 80 ~~~~~i 85 (309)
T 2fvy_A 80 ARGQNV 85 (309)
T ss_dssp HHTTTC
T ss_pred HHHCCC
Confidence 877775
No 277
>2czl_A Hypothetical protein TTHA1568; conserved hypothetical protein, extremely thermoph bacteria, structural genomics, NPPSFA; HET: CME TLA XPE; 1.55A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 2dbp_A* 3a3u_A*
Probab=52.57 E-value=20 Score=35.53 Aligned_cols=59 Identities=10% Similarity=0.042 Sum_probs=38.2
Q ss_pred hHHhhcCCCCeeEEeCchHHHHHHhhhCCCccCcccCCCHHHHHHHhhcCCCCCceEEEEcc-HHHHH
Q 003093 595 IDSLRSSNYPIGYQVNSFARNYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDD-RAYAE 661 (848)
Q Consensus 595 l~dL~~s~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~-~~~~~ 661 (848)
++||. |++|++..++....++.+..-.. .+++.. ...+...++.+ |++||.+.. .+.+.
T Consensus 91 ~~dLk--Gk~Ia~~~~~~~~~~ll~~ll~~-~~~~~~-~~~~~~~al~~----G~vDa~~~~~ep~~~ 150 (272)
T 2czl_A 91 LQALE--GLRVAVPGRHTTAYFLLSLYAQG-FVPVEV-RYDRILPMVAQ----GEVEAGLIIHESRFT 150 (272)
T ss_dssp CSCCT--TCEEEESCTTSHHHHHHHHHCSS-CEEEEC-CGGGHHHHHHT----TSSSEEEECTTHHHH
T ss_pred hHHhC--CCEEEeCCCCchHHHHHHHHhcc-Cceeec-ChHHHHHHHHC----CCCCEEEEecchhhh
Confidence 67887 99999987655544433322111 233333 45588899999 899998874 66665
No 278
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=52.48 E-value=23 Score=35.69 Aligned_cols=80 Identities=10% Similarity=-0.001 Sum_probs=54.4
Q ss_pred EEEEEEEE--cCCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccCCc-HHHHHHHH
Q 003093 73 REVIAIYV--DDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNR-GPVVFHVA 149 (848)
Q Consensus 73 ~~vaii~~--dd~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~-~~~~~~~a 149 (848)
.+|+++.. +++|.......+.+++++.|.++.... +...+.......+..+...++|.|++...... ....++.+
T Consensus 5 ~~Ig~i~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~--~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~~~ 82 (303)
T 3d02_A 5 KTVVNISKVDGMPWFNRMGEGVVQAGKEFNLNASQVG--PSSTDAPQQVKIIEDLIARKVDAITIVPNDANVLEPVFKKA 82 (303)
T ss_dssp EEEEEECSCSSCHHHHHHHHHHHHHHHHTTEEEEEEC--CSSSCHHHHHHHHHHHHHTTCSEEEECCSCHHHHHHHHHHH
T ss_pred eEEEEEeccCCChHHHHHHHHHHHHHHHcCCEEEEEC--CCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHHHH
Confidence 56788763 456778888999999999998876422 12223344556677777788999988765332 23466777
Q ss_pred HHcCC
Q 003093 150 QYLGM 154 (848)
Q Consensus 150 ~~~g~ 154 (848)
.+.|.
T Consensus 83 ~~~~i 87 (303)
T 3d02_A 83 RDAGI 87 (303)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 77775
No 279
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=51.89 E-value=27 Score=32.48 Aligned_cols=66 Identities=12% Similarity=0.130 Sum_probs=48.1
Q ss_pred cEEEEEEEEcCCC----ccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccC
Q 003093 72 WREVIAIYVDDDH----GRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY 139 (848)
Q Consensus 72 w~~vaii~~dd~~----g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~ 139 (848)
--+|++|...|+- -......+...+++.|.++.....++.+ ..++...+.+..+.++|+|+..+..
T Consensus 30 ~~rvaIistGdEl~~G~~Dsn~~~L~~~L~~~G~~v~~~~iv~Dd--~~~I~~al~~a~~~~~DlVIttGGt 99 (185)
T 3rfq_A 30 VGRALVVVVDDRTAHGDEDHSGPLVTELLTEAGFVVDGVVAVEAD--EVDIRNALNTAVIGGVDLVVSVGGT 99 (185)
T ss_dssp CEEEEEEEECHHHHTTCCCSHHHHHHHHHHHTTEEEEEEEEECSC--HHHHHHHHHHHHHTTCSEEEEESCC
T ss_pred CCEEEEEEECcccCCCCcCcHHHHHHHHHHHCCCEEEEEEEeCCC--HHHHHHHHHHHHhCCCCEEEECCCC
Confidence 3578888755432 2345678888999999999988777753 4778888887655679999988643
No 280
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=51.82 E-value=1.1e+02 Score=26.74 Aligned_cols=85 Identities=12% Similarity=0.135 Sum_probs=55.3
Q ss_pred EEEEEEEcCCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccCCc----HHHHHHHH
Q 003093 74 EVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNR----GPVVFHVA 149 (848)
Q Consensus 74 ~vaii~~dd~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~----~~~~~~~a 149 (848)
+|.+-....+.-.-+..-+...|+..|.+|.+.-... +.+ ..+..+++.++++|.+++.... ...++++.
T Consensus 5 ~vvla~~~~d~HdiG~~~v~~~l~~~G~~Vi~lG~~~---p~e---~~v~~a~~~~~d~v~lS~~~~~~~~~~~~~i~~l 78 (137)
T 1ccw_A 5 TIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNIGVLS---PQE---LFIKAAIETKADAILVSSLYGQGEIDCKGLRQKC 78 (137)
T ss_dssp EEEEEEETTCCCCHHHHHHHHHHHHTTCEEEEEEEEE---CHH---HHHHHHHHHTCSEEEEEECSSTHHHHHTTHHHHH
T ss_pred EEEEEeCCCchhHHHHHHHHHHHHHCCCEEEECCCCC---CHH---HHHHHHHhcCCCEEEEEecCcCcHHHHHHHHHHH
Confidence 4555555555555566778888999999998765432 223 3455566678999999876543 34467778
Q ss_pred HHcCCCCCCeEEEecC
Q 003093 150 QYLGMLGTGYVWIATS 165 (848)
Q Consensus 150 ~~~g~~~~~~~wi~~~ 165 (848)
++.|.. .-.+|+++.
T Consensus 79 ~~~g~~-~i~v~vGG~ 93 (137)
T 1ccw_A 79 DEAGLE-GILLYVGGN 93 (137)
T ss_dssp HHTTCT-TCEEEEEES
T ss_pred HhcCCC-CCEEEEECC
Confidence 887763 234556553
No 281
>3lr1_A Tungstate ABC transporter, periplasmic tungstate- binding protein; the tungstate ABC transporter, structural genomics, PSI, MCSG; 1.80A {Geobacter sulfurreducens}
Probab=51.61 E-value=9 Score=37.45 Aligned_cols=75 Identities=13% Similarity=0.102 Sum_probs=53.1
Q ss_pred eeeeHHHHHHHHHhCCCCcceEEeeCCCCCCCCChhHHHHHHhcCeeeEEeeceeeecCce---eeeeecccccccceEE
Q 003093 401 SGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDIAIITNRT---KMADFTQPYIESGLVV 477 (848)
Q Consensus 401 ~G~~~dll~~i~~~l~~~~~~~~~~~~~~~~n~s~~~~i~~l~~g~~D~~~~~~~~t~~R~---~~~dfs~p~~~~~~~~ 477 (848)
.|+.-+|+..+.++.|.++.+... .-..++.++.+|.+|+++..-....+.. ....-..|+....+++
T Consensus 18 ~~ll~~L~~~Fek~~gv~V~~~~~---------gSg~ll~qi~~G~aDV~isa~~~~~~~l~~~g~~~~~~~~~~n~lVl 88 (236)
T 3lr1_A 18 SGLLKVLLPPFEKKNNVKVDVIAV---------GTGQALKLGEAGDVDVVFVHARKLEDKFVADGFGVNRKDVMYNDFVI 88 (236)
T ss_dssp HCHHHHHHHHHHHHHTCEEEEEEE---------CHHHHHHHHHTTSCSEEEECCHHHHHHHHHTTSEEEEEEEEECCEEE
T ss_pred hHHHHHHHHHHHHHhCCeEEEEEc---------ChHHHHHHHhcCCCCEEeecCchhHHHHHhcCCCcceEEEEcCcEEE
Confidence 466778888888888877666553 3667899999999999987544333211 1112245889999999
Q ss_pred EEeccCC
Q 003093 478 VAPVRKL 484 (848)
Q Consensus 478 v~~~~~~ 484 (848)
++|+.++
T Consensus 89 V~P~~~P 95 (236)
T 3lr1_A 89 VGPKNDP 95 (236)
T ss_dssp EECTTCT
T ss_pred EEECCCh
Confidence 9998764
No 282
>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}
Probab=51.53 E-value=56 Score=32.01 Aligned_cols=93 Identities=6% Similarity=0.023 Sum_probs=67.7
Q ss_pred HHHHHHHHHcCcEEEEEEEEc------------CCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcC
Q 003093 61 AAIAEIVDHYGWREVIAIYVD------------DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALT 128 (848)
Q Consensus 61 ~ai~~~~~~~~w~~vaii~~d------------d~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~ 128 (848)
....+.++..|.+.|=+...+ ........+.+++.+++.|+++........ ....++...+...+..
T Consensus 25 ~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~-~~~~~~~~~i~~A~~l 103 (262)
T 3p6l_A 25 TEALDKTQELGLKYIEIYPGHKLGGKWGDKVFDFNLDAQTQKEIKELAASKGIKIVGTGVYVA-EKSSDWEKMFKFAKAM 103 (262)
T ss_dssp HHHHHHHHHTTCCEEEECTTEECCGGGTTCEESTTCCHHHHHHHHHHHHHTTCEEEEEEEECC-SSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCEEeecCCcccccccccccccccCCHHHHHHHHHHHHHcCCeEEEEeccCC-ccHHHHHHHHHHHHHc
Confidence 455666778888888775422 122344578999999999999876655432 2446788888888889
Q ss_pred CCeEEEEEccCCcHHHHHHHHHHcCC
Q 003093 129 ESRIIVVHTHYNRGPVVFHVAQYLGM 154 (848)
Q Consensus 129 ~~~viv~~~~~~~~~~~~~~a~~~g~ 154 (848)
+++.|+++...+....+...|++.|+
T Consensus 104 Ga~~v~~~~~~~~~~~l~~~a~~~gv 129 (262)
T 3p6l_A 104 DLEFITCEPALSDWDLVEKLSKQYNI 129 (262)
T ss_dssp TCSEEEECCCGGGHHHHHHHHHHHTC
T ss_pred CCCEEEecCCHHHHHHHHHHHHHhCC
Confidence 99999998766666777888888776
No 283
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}
Probab=51.27 E-value=20 Score=37.51 Aligned_cols=82 Identities=11% Similarity=0.115 Sum_probs=56.4
Q ss_pred HHHHHHHHHcCcEEEEEEEEcCCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccC-
Q 003093 61 AAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY- 139 (848)
Q Consensus 61 ~ai~~~~~~~~w~~vaii~~dd~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~- 139 (848)
..+.++++.+|.+++.+|+..... ...+.+.+.|++.++.+ + ..+.+..+.+.+...+..+++.++|+||-.+.+
T Consensus 23 ~~l~~~l~~~g~~r~liVtd~~~~--~~~~~v~~~L~~~~~~v-~-~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 98 (353)
T 3hl0_A 23 ADVAEEIRRLGLSRALVLSTPQQK--GDAEALASRLGRLAAGV-F-SEAAMHTPVEVTKTAVEAYRAAGADCVVSLGGGS 98 (353)
T ss_dssp GGHHHHHHHTTCCCEEEECCGGGH--HHHHHHHHHHGGGEEEE-E-CCCCTTCBHHHHHHHHHHHHHTTCSEEEEEESHH
T ss_pred HHHHHHHHHhCCCEEEEEecCchh--hHHHHHHHHHhhCCcEE-e-cCcCCCCcHHHHHHHHHHHhccCCCEEEEeCCcH
Confidence 346777888999999988855433 35678888888866543 2 233333455778888888888999999887654
Q ss_pred -CcHHHHH
Q 003093 140 -NRGPVVF 146 (848)
Q Consensus 140 -~~~~~~~ 146 (848)
-+...++
T Consensus 99 ~iD~aK~i 106 (353)
T 3hl0_A 99 TTGLGKAI 106 (353)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 3444444
No 284
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=51.13 E-value=34 Score=31.09 Aligned_cols=64 Identities=17% Similarity=0.088 Sum_probs=46.3
Q ss_pred EEEEEEEcCC-----CccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcC-CCeEEEEEccC
Q 003093 74 EVIAIYVDDD-----HGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALT-ESRIIVVHTHY 139 (848)
Q Consensus 74 ~vaii~~dd~-----~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~-~~~viv~~~~~ 139 (848)
+|++|...|+ .-......+...+++.|+++.....++.+ ...+...|.+..+. ++|+|+..+..
T Consensus 3 ~v~Ii~tGdEl~~G~i~D~n~~~l~~~l~~~G~~v~~~~iv~Dd--~~~i~~~l~~~~~~~~~DlVittGG~ 72 (164)
T 2is8_A 3 RVGILTVSDKGFRGERQDTTHLAIREVLAGGPFEVAAYELVPDE--PPMIKKVLRLWADREGLDLILTNGGT 72 (164)
T ss_dssp EEEEEEECHHHHHTSSCCCHHHHHHHHHTTSSEEEEEEEEECSC--HHHHHHHHHHHHHTSCCSEEEEESCC
T ss_pred EEEEEEEcCcccCCCcccchHHHHHHHHHHCCCeEeEEEEcCCC--HHHHHHHHHHHHhcCCCCEEEEcCCC
Confidence 5677765444 11234567889999999999888777753 47788888887654 79999988653
No 285
>1r9l_A Glycine betaine-binding periplasmic protein; periplasmic binding protein, cation-PI interactions, tryptophan BOX, protein binding; 1.59A {Escherichia coli} SCOP: c.94.1.1 PDB: 1r9q_A*
Probab=50.55 E-value=29 Score=35.41 Aligned_cols=40 Identities=13% Similarity=-0.013 Sum_probs=29.2
Q ss_pred HHHHHHHHHhCCCCcceEEeeCCCCCCCCChhHHHHHHhcCeeeEEee
Q 003093 405 IDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVG 452 (848)
Q Consensus 405 ~dll~~i~~~l~~~~~~~~~~~~~~~~n~s~~~~i~~l~~g~~D~~~~ 452 (848)
..+++.+.+.+|+++++... .+-.-+...|.+|++|+...
T Consensus 24 ~~i~~~~Le~~Gy~Ve~~~~--------~~~~~~~~Al~~G~iDi~~e 63 (309)
T 1r9l_A 24 TLLVSRALEKLGYTVNKPSE--------VDYNVGYTSLASGDATFTAV 63 (309)
T ss_dssp HHHHHHHHHHTTCEECCCEE--------CCHHHHHHHHHHTSSCEEEE
T ss_pred HHHHHHHHHHcCCCeEEeec--------CchHHHHHHHhcCCceEEec
Confidence 35666777788998766431 23567788999999999875
No 286
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=49.88 E-value=64 Score=33.06 Aligned_cols=78 Identities=6% Similarity=0.011 Sum_probs=56.8
Q ss_pred EEEEEEEE--cCCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccCCcHHHHHHHHH
Q 003093 73 REVIAIYV--DDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQ 150 (848)
Q Consensus 73 ~~vaii~~--dd~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~~~~~a~ 150 (848)
+.|+++.. ++.|.......+.+++++.|..+..... ..+.......+..+...++|.|++....... ..++.+.
T Consensus 69 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~i~~l~~~~vdGiIi~~~~~~~-~~~~~l~ 144 (344)
T 3kjx_A 69 NLVAVIIPSLSNMVFPEVLTGINQVLEDTELQPVVGVT---DYLPEKEEKVLYEMLSWRPSGVIIAGLEHSE-AARAMLD 144 (344)
T ss_dssp SEEEEEESCSSSSSHHHHHHHHHHHHTSSSSEEEEEEC---TTCHHHHHHHHHHHHTTCCSEEEEECSCCCH-HHHHHHH
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHHHHHHCCCEEEEEeC---CCCHHHHHHHHHHHHhCCCCEEEEECCCCCH-HHHHHHH
Confidence 46888874 4678888899999999999998865422 1233455667778888899999987654433 5677777
Q ss_pred HcCC
Q 003093 151 YLGM 154 (848)
Q Consensus 151 ~~g~ 154 (848)
+.|+
T Consensus 145 ~~~i 148 (344)
T 3kjx_A 145 AAGI 148 (344)
T ss_dssp HCSS
T ss_pred hCCC
Confidence 7776
No 287
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=49.63 E-value=33 Score=33.92 Aligned_cols=76 Identities=5% Similarity=-0.009 Sum_probs=53.8
Q ss_pred EEEEEEEEc--CCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccCCcHHHHHH-HH
Q 003093 73 REVIAIYVD--DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFH-VA 149 (848)
Q Consensus 73 ~~vaii~~d--d~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~~~~-~a 149 (848)
+.|+++..+ +.|.......+.+++++.|..+..... ..+.......+..+.+.++|.|++.... ...++ .+
T Consensus 9 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~~dgiIi~~~~---~~~~~~~l 82 (277)
T 3e61_A 9 KLIGLLLPDMSNPFFTLIARGVEDVALAHGYQVLIGNS---DNDIKKAQGYLATFVSHNCTGMISTAFN---ENIIENTL 82 (277)
T ss_dssp -CEEEEESCTTSHHHHHHHHHHHHHHHHTTCCEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEECGGG---HHHHHHHH
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEeC---CCCHHHHHHHHHHHHhCCCCEEEEecCC---hHHHHHHH
Confidence 568888754 567788889999999999998875322 2233455667788888899999997732 34567 77
Q ss_pred HHcCC
Q 003093 150 QYLGM 154 (848)
Q Consensus 150 ~~~g~ 154 (848)
.+.|+
T Consensus 83 ~~~~i 87 (277)
T 3e61_A 83 TDHHI 87 (277)
T ss_dssp HHC-C
T ss_pred HcCCC
Confidence 77776
No 288
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=49.35 E-value=41 Score=33.34 Aligned_cols=79 Identities=3% Similarity=-0.014 Sum_probs=53.4
Q ss_pred EEEEEEEE--cCCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccC-CcHHHHHHHH
Q 003093 73 REVIAIYV--DDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY-NRGPVVFHVA 149 (848)
Q Consensus 73 ~~vaii~~--dd~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~-~~~~~~~~~a 149 (848)
+.|+++.. +++|.......+.+++++.|..+..... ..+...-...+..+...++|.|++.... ......++.+
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 78 (283)
T 2ioy_A 2 KTIGLVISTLNNPFFVTLKNGAEEKAKELGYKIIVEDS---QNDSSKELSNVEDLIQQKVDVLLINPVDSDAVVTAIKEA 78 (283)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEECCSSTTTTHHHHHHH
T ss_pred eEEEEEecCCCCHHHHHHHHHHHHHHHhcCcEEEEecC---CCCHHHHHHHHHHHHHcCCCEEEEeCCchhhhHHHHHHH
Confidence 35777774 3567778889999999999998765432 1222334456777777889999886543 3333567778
Q ss_pred HHcCC
Q 003093 150 QYLGM 154 (848)
Q Consensus 150 ~~~g~ 154 (848)
.+.|.
T Consensus 79 ~~~~i 83 (283)
T 2ioy_A 79 NSKNI 83 (283)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 77776
No 289
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=49.07 E-value=47 Score=33.95 Aligned_cols=80 Identities=8% Similarity=-0.079 Sum_probs=54.6
Q ss_pred CcEEEEEEEEc--CCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccCCcHHHHHHH
Q 003093 71 GWREVIAIYVD--DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHV 148 (848)
Q Consensus 71 ~w~~vaii~~d--d~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~~~~~ 148 (848)
.-+.|+++..+ ++|.......+.+++++.|..+..... ..+...-...+..+...++|.|++...... ...+..
T Consensus 62 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~~~~ 137 (332)
T 2o20_A 62 RTTTVGVILPTITSTYFAAITRGVDDIASMYKYNMILANS---DNDVEKEEKVLETFLSKQVDGIVYMGSSLD-EKIRTS 137 (332)
T ss_dssp CCCEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEECSSCCC-HHHHHH
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEEC---CCChHHHHHHHHHHHhCCCCEEEEeCCCCC-HHHHHH
Confidence 34578888853 567778889999999999998765421 123344456677777789999998764332 235666
Q ss_pred HHHcCC
Q 003093 149 AQYLGM 154 (848)
Q Consensus 149 a~~~g~ 154 (848)
+.+.|.
T Consensus 138 l~~~~i 143 (332)
T 2o20_A 138 LKNSRT 143 (332)
T ss_dssp HHHHCC
T ss_pred HHhCCC
Confidence 666675
No 290
>3tmg_A Glycine betaine, L-proline ABC transporter, glycine/betaine/L-proline-binding protein...; ssgcid, structural genomics; 1.90A {Borrelia burgdorferi}
Probab=48.80 E-value=53 Score=32.82 Aligned_cols=56 Identities=13% Similarity=0.249 Sum_probs=37.5
Q ss_pred CceEEEEecCCCCccceEEeCCCcceeeeeHHHHHHHHHhCCCCcceEEeeCCCCCCCCChhHHHHHHhcCeeeEEee
Q 003093 375 GRHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVG 452 (848)
Q Consensus 375 g~~lrv~v~~~~~~~p~~~~~~~~~~~G~~~dll~~i~~~l~~~~~~~~~~~~~~~~n~s~~~~i~~l~~g~~D~~~~ 452 (848)
.++++||.. +|.. .-+...+.+.+.+.+|+++++. + ++-.-+...|.+|++|+...
T Consensus 15 ~~~I~Ig~~---~~te----------~~i~~~i~~~~Le~~G~~Ve~~--~-------~~~~~~~~AL~~G~iD~~~e 70 (280)
T 3tmg_A 15 LKSVKIGYV---NWGG----------ETAATNVLKVVFEKMGYNAEIF--S-------VTTSIMYQYLASGKIDGTVS 70 (280)
T ss_dssp CEEEEEEEC---CCHH----------HHHHHHHHHHHHHHTTEEEEEE--E-------CCHHHHHHHHHTTSSSEEEE
T ss_pred CCCEEEEcC---CCch----------HHHHHHHHHHHHHHCCCceEEE--E-------CCcHHHHHHHHCCCCcEEEe
Confidence 457888765 2322 1133556777777789886663 3 23456789999999999876
No 291
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=48.67 E-value=51 Score=32.22 Aligned_cols=93 Identities=15% Similarity=0.118 Sum_probs=66.8
Q ss_pred HHHHHHHHHcCcEEEEEEEEc--CCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEcc
Q 003093 61 AAIAEIVDHYGWREVIAIYVD--DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTH 138 (848)
Q Consensus 61 ~ai~~~~~~~~w~~vaii~~d--d~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~ 138 (848)
....+.++..|.+.|=+.... .+......+.+++.+++.|+++........ .....+...+...+..+++.|+++..
T Consensus 33 ~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~-~~~~~~~~~i~~A~~lGa~~v~~~p~ 111 (257)
T 3lmz_A 33 DTTLKTLERLDIHYLCIKDFHLPLNSTDEQIRAFHDKCAAHKVTGYAVGPIYM-KSEEEIDRAFDYAKRVGVKLIVGVPN 111 (257)
T ss_dssp HHHHHHHHHTTCCEEEECTTTSCTTCCHHHHHHHHHHHHHTTCEEEEEEEEEE-CSHHHHHHHHHHHHHHTCSEEEEEEC
T ss_pred HHHHHHHHHhCCCEEEEecccCCCCCCHHHHHHHHHHHHHcCCeEEEEecccc-CCHHHHHHHHHHHHHhCCCEEEecCC
Confidence 556667788898888765421 123345568999999999999875543322 34567888888888889999998766
Q ss_pred CCcHHHHHHHHHHcCC
Q 003093 139 YNRGPVVFHVAQYLGM 154 (848)
Q Consensus 139 ~~~~~~~~~~a~~~g~ 154 (848)
.+....+...|++.|+
T Consensus 112 ~~~l~~l~~~a~~~gv 127 (257)
T 3lmz_A 112 YELLPYVDKKVKEYDF 127 (257)
T ss_dssp GGGHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHcCC
Confidence 6667778888888886
No 292
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=48.43 E-value=37 Score=34.32 Aligned_cols=79 Identities=9% Similarity=-0.074 Sum_probs=53.3
Q ss_pred EEEEEEEcCC-CccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccC-CcHHHHHHHHHH
Q 003093 74 EVIAIYVDDD-HGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY-NRGPVVFHVAQY 151 (848)
Q Consensus 74 ~vaii~~dd~-~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~-~~~~~~~~~a~~ 151 (848)
+|+++..+.. |.......+.+++++.|.++.... +...+.......++.+...++|.|++.... ......++++.+
T Consensus 3 ~Ig~i~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~--~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~ 80 (313)
T 2h3h_A 3 TIGVIGKSVHPYWSQVEQGVKAAGKALGVDTKFFV--PQKEDINAQLQMLESFIAEGVNGIAIAPSDPTAVIPTIKKALE 80 (313)
T ss_dssp EEEEECSCSSHHHHHHHHHHHHHHHHHTCEEEEEC--CSSSCHHHHHHHHHHHHHTTCSEEEECCSSTTTTHHHHHHHHH
T ss_pred EEEEEeCCCcHHHHHHHHHHHHHHHHcCCEEEEEC--CCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHHHH
Confidence 5677764321 777888899999999999876542 112233445566777777899999987544 333457778877
Q ss_pred cCC
Q 003093 152 LGM 154 (848)
Q Consensus 152 ~g~ 154 (848)
.|.
T Consensus 81 ~~i 83 (313)
T 2h3h_A 81 MGI 83 (313)
T ss_dssp TTC
T ss_pred CCC
Confidence 776
No 293
>3cfz_A UPF0100 protein MJ1186; ABC transporter, binding protein, molybdate, tungstate, ligand, unknown function, transport protein; 1.70A {Methanocaldococcus jannaschii}
Probab=48.26 E-value=1.9e+02 Score=28.59 Aligned_cols=71 Identities=14% Similarity=0.002 Sum_probs=44.8
Q ss_pred eHHHHHHHHHh-CCCCcceEEeeCCCCCCCCChhHHHHHHhc-Ce-eeEEeeceee--e-cCceeeeeecccccccceEE
Q 003093 404 CIDVFTAAINL-LPYAVPYKLIPFGDGHNNPSCTELVRLITA-GV-YDAAVGDIAI--I-TNRTKMADFTQPYIESGLVV 477 (848)
Q Consensus 404 ~~dll~~i~~~-l~~~~~~~~~~~~~~~~n~s~~~~i~~l~~-g~-~D~~~~~~~~--t-~~R~~~~dfs~p~~~~~~~~ 477 (848)
.-++++.+.++ -|.++++.+ ++-..++.++.+ |. +|+.++.-.. . ......++...||....+++
T Consensus 19 ~~~l~~~F~~~~~gi~V~~~~---------~~s~~l~~~i~~~g~~~Dv~~~a~~~~~~~l~~~gl~~~~~~~~~~~lvi 89 (292)
T 3cfz_A 19 FEEYEKMFEKEHPNVDVEREP---------AGSVACVRKIIDLGKKADILASADYSLIPQMMMPKYADWYVMFARNEIVL 89 (292)
T ss_dssp HHHHHHHHHHHCTTEEEEEEE---------ECHHHHHHHHHTSCCCCSEEEESSTTHHHHHTTTTTCSCCEEEEECCEEE
T ss_pred HHHHHHHHHHHCCCceEEEEe---------CCHHHHHHHHHhcCCCCcEEEECChHHHHHHHhCCCccceeeeEeccEEE
Confidence 34677777777 477755543 346678888888 75 9998763211 1 11122334556778888898
Q ss_pred EEeccC
Q 003093 478 VAPVRK 483 (848)
Q Consensus 478 v~~~~~ 483 (848)
++++..
T Consensus 90 ~~~~~~ 95 (292)
T 3cfz_A 90 AYTDKS 95 (292)
T ss_dssp EECTTS
T ss_pred EEcCCC
Confidence 887654
No 294
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=48.19 E-value=36 Score=34.26 Aligned_cols=79 Identities=6% Similarity=-0.024 Sum_probs=53.8
Q ss_pred EEEEEEEE--cCCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccCCc-HHHHHHHH
Q 003093 73 REVIAIYV--DDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNR-GPVVFHVA 149 (848)
Q Consensus 73 ~~vaii~~--dd~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~-~~~~~~~a 149 (848)
.+|+++.. ++.|.......+.+++++.|..+..... ..+...-...+..+...++|.|++...... ....++.+
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~l~~~~~---~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 79 (306)
T 2vk2_A 3 LTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADG---QQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEA 79 (306)
T ss_dssp CEEEEEECCCCSHHHHHHHHHHHHHHHHHTCEEEEEEC---TTCHHHHHHHHHHHHHHTCSEEEECCSSSSSCHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEeCC---CCCHHHHHHHHHHHHHcCCCEEEEeCCChhhHHHHHHHH
Confidence 46778774 3456677788899999999998765422 123344455677777778999988765433 24567777
Q ss_pred HHcCC
Q 003093 150 QYLGM 154 (848)
Q Consensus 150 ~~~g~ 154 (848)
.+.|+
T Consensus 80 ~~~~i 84 (306)
T 2vk2_A 80 KDAEI 84 (306)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 77775
No 295
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=47.50 E-value=84 Score=28.17 Aligned_cols=76 Identities=11% Similarity=0.036 Sum_probs=44.9
Q ss_pred EEEEEEEEcCCCc--cchHHHHHHHHhccCcEEEEeeecCCCCChH-HHHHHHHHHhcCCCeEEEEEccCCcH----HHH
Q 003093 73 REVIAIYVDDDHG--RNGIAALGDTLAAKRCRISFKAPLSVEATED-EITDLLVKVALTESRIIVVHTHYNRG----PVV 145 (848)
Q Consensus 73 ~~vaii~~dd~~g--~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~-d~~~~l~~i~~~~~~viv~~~~~~~~----~~~ 145 (848)
+++.|+| .+.+| +..++.+.+.+++.|+++.... +. . . +...++.++. +.|.|++.+..-.+ ..+
T Consensus 5 ~kv~IvY-~S~~GnT~~iA~~ia~~l~~~g~~v~~~~-~~--~--~~~~~~~~~~~~--~~d~ii~Gspty~g~~p~~~~ 76 (159)
T 3fni_A 5 TSIGVFY-VSEYGYSDRLAQAIINGITKTGVGVDVVD-LG--A--AVDLQELRELVG--RCTGLVIGMSPAASAASIQGA 76 (159)
T ss_dssp CEEEEEE-CTTSTTHHHHHHHHHHHHHHTTCEEEEEE-SS--S--CCCHHHHHHHHH--TEEEEEEECCBTTSHHHHHHH
T ss_pred CEEEEEE-ECCChHHHHHHHHHHHHHHHCCCeEEEEE-Cc--C--cCCHHHHHHHHH--hCCEEEEEcCcCCCCccHHHH
Confidence 5788898 33455 4556788888988888764332 22 1 2 3444555554 47888887654222 245
Q ss_pred HHHHHHcCCCC
Q 003093 146 FHVAQYLGMLG 156 (848)
Q Consensus 146 ~~~a~~~g~~~ 156 (848)
+.......+.+
T Consensus 77 l~~l~~~~~~~ 87 (159)
T 3fni_A 77 LSTILGSVNEK 87 (159)
T ss_dssp HHHHHHHCCTT
T ss_pred HHHHHhhcccC
Confidence 55655555543
No 296
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=47.48 E-value=22 Score=35.63 Aligned_cols=79 Identities=5% Similarity=-0.117 Sum_probs=55.8
Q ss_pred cEEEEEEEEc--CCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccCCcHHHHHHHH
Q 003093 72 WREVIAIYVD--DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVA 149 (848)
Q Consensus 72 w~~vaii~~d--d~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~~~~~a 149 (848)
-+.|+++..+ +.|.......+.+++++.|..+..... ..+.......+..+.+.++|.||+..... ....++.+
T Consensus 8 ~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiIi~~~~~-~~~~~~~~ 83 (291)
T 3egc_A 8 SNVVGLIVSDIENVFFAEVASGVESEARHKGYSVLLANT---AEDIVREREAVGQFFERRVDGLILAPSEG-EHDYLRTE 83 (291)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEECCCSS-CCHHHHHS
T ss_pred CcEEEEEECCCcchHHHHHHHHHHHHHHHCCCEEEEEeC---CCCHHHHHHHHHHHHHCCCCEEEEeCCCC-ChHHHHHh
Confidence 3578888744 456777889999999999998875432 22335556677888888999999876654 34566666
Q ss_pred HHcCC
Q 003093 150 QYLGM 154 (848)
Q Consensus 150 ~~~g~ 154 (848)
.+.|.
T Consensus 84 ~~~~i 88 (291)
T 3egc_A 84 LPKTF 88 (291)
T ss_dssp SCTTS
T ss_pred hccCC
Confidence 66665
No 297
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=47.32 E-value=1.2e+02 Score=27.19 Aligned_cols=86 Identities=12% Similarity=0.059 Sum_probs=56.9
Q ss_pred EEEEEEEEcCCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccC----CcHHHHHHH
Q 003093 73 REVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY----NRGPVVFHV 148 (848)
Q Consensus 73 ~~vaii~~dd~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~----~~~~~~~~~ 148 (848)
.+|.+.....+.-.-+...+...|+..|.+|.+.-.. .+ ....+..+++.++|+|.+.+.. .....++++
T Consensus 19 ~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~---~p---~e~lv~aa~~~~~diV~lS~~~~~~~~~~~~~i~~ 92 (161)
T 2yxb_A 19 YKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLR---QT---PEQVAMAAVQEDVDVIGVSILNGAHLHLMKRLMAK 92 (161)
T ss_dssp CEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSB---CC---HHHHHHHHHHTTCSEEEEEESSSCHHHHHHHHHHH
T ss_pred CEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCC---CC---HHHHHHHHHhcCCCEEEEEeechhhHHHHHHHHHH
Confidence 4566655566665666777888899999998864322 12 3345667777899999998764 345567777
Q ss_pred HHHcCCCCCCeEEEecC
Q 003093 149 AQYLGMLGTGYVWIATS 165 (848)
Q Consensus 149 a~~~g~~~~~~~wi~~~ 165 (848)
+++.|.. .-.+|+++.
T Consensus 93 L~~~g~~-~i~v~vGG~ 108 (161)
T 2yxb_A 93 LRELGAD-DIPVVLGGT 108 (161)
T ss_dssp HHHTTCT-TSCEEEEEC
T ss_pred HHhcCCC-CCEEEEeCC
Confidence 8887762 234566543
No 298
>2qsx_A Putative transcriptional regulator, LYSR family; the putative transcriptional regulator, PSI-2, structure initiative, MCSG; 1.64A {Vibrio parahaemolyticus}
Probab=46.43 E-value=1.5e+02 Score=27.47 Aligned_cols=70 Identities=11% Similarity=0.041 Sum_probs=42.0
Q ss_pred ccCCCHHHHHHHhhcCCCCCceEEEEccHHHHHHHHhcCCcEEEeC-C-ccccCCceeeecCCCCchHHHHHHHHhhh
Q 003093 629 VPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRCEFSIVG-Q-VFTKNGWGFAFPRDSPLAVDISTAILKLS 704 (848)
Q Consensus 629 ~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~-~-~~~~~~~~~~~~k~spl~~~in~~i~~l~ 704 (848)
..+++.+...+++.. |...+++..... +-.+.. ..+..+. + ......+.++.+++.+....+...+..+.
T Consensus 140 ~~~~~~~~~~~~v~~----G~Gia~lp~~~~-~~~l~~-g~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~l~ 211 (218)
T 2qsx_A 140 VGFEHFYLACEAVRM----EKGLALLPDFMA-QFSILR-GDIQHIGNLKLHSGYGYYVVIPNFRLTSRKVALFHDWLK 211 (218)
T ss_dssp BCCSSHHHHHHHHHT----TCCBEEEEHHHH-HHHHHT-TSEEEEEEEEEEEEEEEEEECCTTCTTCHHHHHHHHHHH
T ss_pred ceeccHHHHHHHHHh----CCCEEEecHHHH-HHHHHC-CCccccCccccCCCceEEEEeccccCCCHHHHHHHHHHH
Confidence 457889999999999 555666665433 333333 2344332 2 12235678888888776666665555443
No 299
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=46.43 E-value=49 Score=32.49 Aligned_cols=79 Identities=3% Similarity=-0.007 Sum_probs=53.3
Q ss_pred EEEEEEEE--cCCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccCCc-HHHHHHHH
Q 003093 73 REVIAIYV--DDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNR-GPVVFHVA 149 (848)
Q Consensus 73 ~~vaii~~--dd~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~-~~~~~~~a 149 (848)
+.|+++.. +++|.......+.++++++|.++..... ..+...-...+..+...++|.|++...... ....++.+
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 78 (271)
T 2dri_A 2 DTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDS---QNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMA 78 (271)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEEC---TTCHHHHHHHHHHHTTTTEEEEEECCSSTTTTHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHHHHHHHHcCcEEEEeCC---CCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHH
Confidence 46777774 3567778889999999999988765422 112233445667777788999988654332 23567777
Q ss_pred HHcCC
Q 003093 150 QYLGM 154 (848)
Q Consensus 150 ~~~g~ 154 (848)
.+.|.
T Consensus 79 ~~~~i 83 (271)
T 2dri_A 79 NQANI 83 (271)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 77775
No 300
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=46.38 E-value=52 Score=30.25 Aligned_cols=64 Identities=9% Similarity=0.054 Sum_probs=44.7
Q ss_pred EEEEEEEcCCC-------c---cchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhc-CCCeEEEEEccC
Q 003093 74 EVIAIYVDDDH-------G---RNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVAL-TESRIIVVHTHY 139 (848)
Q Consensus 74 ~vaii~~dd~~-------g---~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~-~~~~viv~~~~~ 139 (848)
+|+||...|.- | ......+.+.|++.|++|.....++.+ ...+...+.+..+ .++|+|+..+..
T Consensus 17 ~v~iitvsd~~~~~~~~~g~i~D~ng~~L~~~L~~~G~~v~~~~iV~Dd--~~~i~~al~~~~a~~~~DlVittGG~ 91 (178)
T 3iwt_A 17 NFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDD--KIKILKAFTDALSIDEVDVIISTGGT 91 (178)
T ss_dssp EEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSC--HHHHHHHHHHHHTCTTCCEEEEESCC
T ss_pred EEEEEEEcCCCccccccCCCCCcchHHHHHHHHHHCCCEEEEEEEeCCC--HHHHHHHHHHHHhcCCCCEEEecCCc
Confidence 67888754411 1 233467889999999999988888753 3667777776554 578999988653
No 301
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=46.37 E-value=92 Score=26.03 Aligned_cols=59 Identities=15% Similarity=0.106 Sum_probs=40.2
Q ss_pred chHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccC--CcHHHHHHHHHHcCC
Q 003093 87 NGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY--NRGPVVFHVAQYLGM 154 (848)
Q Consensus 87 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~--~~~~~~~~~a~~~g~ 154 (848)
.....+...+++.|..|... .+....+..+....+|+|++.... .++..+++++++...
T Consensus 17 ~~~~~l~~~L~~~g~~v~~~---------~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~ 77 (132)
T 3lte_A 17 AMAAAIERVLKRDHWQVEIA---------HNGFDAGIKLSTFEPAIMTLDLSMPKLDGLDVIRSLRQNKV 77 (132)
T ss_dssp HHHHHHHHHHHHTTCEEEEE---------SSHHHHHHHHHHTCCSEEEEESCBTTBCHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHCCcEEEEe---------CCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcCc
Confidence 35667777888888776532 123345566677889999998653 467788888887653
No 302
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=46.08 E-value=40 Score=34.82 Aligned_cols=81 Identities=4% Similarity=-0.080 Sum_probs=50.8
Q ss_pred cEEEEEEEEc--CCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccCCcHHHHHHHH
Q 003093 72 WREVIAIYVD--DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVA 149 (848)
Q Consensus 72 w~~vaii~~d--d~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~~~~~a 149 (848)
-..|+++..+ +.|.......+.+.+++.|..+..... . ..+.......+..+...++|.|++.........+...+
T Consensus 61 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~-~~~~~~~~~~l~~l~~~~vdGiIi~~~~~~~~~~~~~~ 138 (349)
T 1jye_A 61 SLLIGVATSSLALHAPSQIVAAILSRADQLGASVVVSMV-E-RSGVEACKTAVHNLLAQRVSGLIINYPLDDQDAIAVEA 138 (349)
T ss_dssp -CEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEEC-C-SSSHHHHHHHHHHHHTTTCSCEEEESCCCHHHHHHHHH
T ss_pred CCEEEEEeCCCCcccHHHHHHHHHHHHHHcCCEEEEEeC-C-CCcHHHHHHHHHHHHHCCCCEEEEecCCCChhHHHHHH
Confidence 4578888754 456677888999999999998775422 1 11123445567777778899998874333322333444
Q ss_pred HHcCC
Q 003093 150 QYLGM 154 (848)
Q Consensus 150 ~~~g~ 154 (848)
.+.|.
T Consensus 139 ~~~~i 143 (349)
T 1jye_A 139 ACTNV 143 (349)
T ss_dssp HTTTS
T ss_pred hhCCC
Confidence 44454
No 303
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=46.07 E-value=6.9 Score=39.86 Aligned_cols=53 Identities=19% Similarity=0.202 Sum_probs=45.4
Q ss_pred CCcchhhhhHHHHhhhcC--ccccccchhHHHHHHHHhhhhhhhccccceeeeee
Q 003093 531 RQVVTIFWFSFSTMFFAH--KEKTVSALGRLVLIIWLFVVLIINSSYTASLTSIL 583 (848)
Q Consensus 531 ~~~~~~~~~~~~~l~~~~--~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~L 583 (848)
.++.+++||++.++..-| .-.|.+..+|++.++|.++++.+.....+.+...|
T Consensus 114 w~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l 168 (309)
T 3um7_A 114 WDLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRL 168 (309)
T ss_dssp CSHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999998664 55899999999999999999999988888776655
No 304
>4edp_A ABC transporter, substrate-binding protein; clostridium PERF ATCC 13124, center for structural genomics of infectious DI csgid; 1.85A {Clostridium perfringens}
Probab=45.98 E-value=1.5e+02 Score=30.03 Aligned_cols=80 Identities=11% Similarity=-0.039 Sum_probs=49.5
Q ss_pred CCCHHHHHHHhhcCCCCCceEEEEccHHHHHHHHhcCCcEEEe-CC-ccccCCceeeecCCCCchHHHHHHHHhhhccCc
Q 003093 631 LNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRCEFSIV-GQ-VFTKNGWGFAFPRDSPLAVDISTAILKLSENGD 708 (848)
Q Consensus 631 ~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~-~~-~~~~~~~~~~~~k~spl~~~in~~i~~l~e~G~ 708 (848)
..+..+..+.+.+ |++++.+.....+..+.....++.++ +. .......+++++++++-.+.--+.|..|.....
T Consensus 216 ~~~~~~~~~~f~~----G~~a~~~~~~~~~~~~~~~~~~~~~~~P~~g~~~~~~~~~i~~~s~~~~~A~~fi~~l~s~e~ 291 (351)
T 4edp_A 216 YSKSSDLANMFSN----GEIVAAVASDFAFGTISKAKPEVINVIPESGTYLNFNTININKNSKNKDLAYEFINYALSKEV 291 (351)
T ss_dssp ECCHHHHHHHHHT----TSCSEEEEEHHHHHHHHHHCTTCEEECCTTCCBEEEEEEEEBTTCSCHHHHHHHHHHHTSHHH
T ss_pred cCChHHHHHHHHc----CCEEEEecCcHHHHHHHhcCCCeeeeCCCCCcccceeeEEEECCCCCHHHHHHHHHHhcCHHH
Confidence 3566788888988 88888887666655555554444433 21 112234578999999877766666766665433
Q ss_pred hHHHHH
Q 003093 709 LQRIHD 714 (848)
Q Consensus 709 ~~~~~~ 714 (848)
...+.+
T Consensus 292 q~~~~~ 297 (351)
T 4edp_A 292 QEKTAK 297 (351)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333433
No 305
>2zsk_A PH1733, 226AA long hypothetical aspartate racemase; alpha/beta fold, unknown function; 2.55A {Pyrococcus horikoshii}
Probab=45.92 E-value=57 Score=31.31 Aligned_cols=41 Identities=22% Similarity=0.167 Sum_probs=24.9
Q ss_pred HHHHHHHHHcCcEEEEEEEEcCCCccchHHHHHHHHhccCcEEE
Q 003093 61 AAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRIS 104 (848)
Q Consensus 61 ~ai~~~~~~~~w~~vaii~~dd~~g~~~~~~l~~~l~~~g~~v~ 104 (848)
.+.++.+...+-++|+++... +... ...+.+.+++.|+++.
T Consensus 104 ~a~~~~~~~~~~~rigvlaT~--~T~~-~~~y~~~l~~~g~~v~ 144 (226)
T 2zsk_A 104 DAVAEEILKRGVRKVLLLGTK--TTMT-ADFYIKTLEEKGLEVV 144 (226)
T ss_dssp HHHHHHHHHTTCCEEEEESST--TTTS-CHHHHHHHHTTTCEEE
T ss_pred HHHHHHHHHcCCCeEEEEeCH--HHHh-hhHHHHHHHHCCCEEE
Confidence 344444444567899999743 3222 2356778888888764
No 306
>3muq_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.05A {Vibrio parahaemolyticus}
Probab=45.85 E-value=11 Score=36.86 Aligned_cols=75 Identities=12% Similarity=0.087 Sum_probs=52.3
Q ss_pred eeeeHHHHHHHHHhCCCCcceEEeeCCCCCCCCChhHHHHHHhcCeeeEEeeceeeecCce---eeeeecccccccceEE
Q 003093 401 SGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDIAIITNRT---KMADFTQPYIESGLVV 477 (848)
Q Consensus 401 ~G~~~dll~~i~~~l~~~~~~~~~~~~~~~~n~s~~~~i~~l~~g~~D~~~~~~~~t~~R~---~~~dfs~p~~~~~~~~ 477 (848)
.|+.-+|+..+.++.+.++.+... .-..++.++.+|.+|+++..-....+.. ....-..|+....+++
T Consensus 18 ~~ll~~L~~~Fek~~gv~V~~~~~---------gSg~ll~qi~~G~aDv~isa~~~~~~~l~~~g~~~~~~~~a~N~lVl 88 (237)
T 3muq_A 18 SGLLDYLLPQFEKDTGYKVDVIAA---------GTGKALKMGENGDVDLVMTHAPKAEGTFVEKGYGVLPRKLMYNDFVI 88 (237)
T ss_dssp HTHHHHHHHHHHHHHCCEEEEEEE---------CHHHHHHHHHTTSSSEEEECCHHHHHHHHHTTSEEEEEEEEEEEEEE
T ss_pred hhHHHHHHHHHHHHhCceEEEEEc---------ChHHHHHHHhcCCCCEEEecCchhHHHHHhcCCccccEEEEeCCEEE
Confidence 466678888888888877665553 3567899999999999987443332221 1112246888899999
Q ss_pred EEeccCC
Q 003093 478 VAPVRKL 484 (848)
Q Consensus 478 v~~~~~~ 484 (848)
++|+.++
T Consensus 89 V~P~~~P 95 (237)
T 3muq_A 89 VGPKADP 95 (237)
T ss_dssp EECTTCT
T ss_pred EEeCCCh
Confidence 9998764
No 307
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha}
Probab=45.77 E-value=25 Score=36.73 Aligned_cols=96 Identities=14% Similarity=0.147 Sum_probs=62.1
Q ss_pred HHHHHHHHHcCcEEEEEEEEcCCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccC-
Q 003093 61 AAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY- 139 (848)
Q Consensus 61 ~ai~~~~~~~~w~~vaii~~dd~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~- 139 (848)
..+.++++.+|.+++.+|+....+ ...+.+.+.|++.++.+ + ..+.+..+.+.+...+..+++.++|+||-.+.+
T Consensus 25 ~~l~~~l~~~g~~r~liVtd~~~~--~~~~~v~~~L~~~~~~~-f-~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 100 (358)
T 3jzd_A 25 SQVAAEVERLGAKRALVLCTPNQQ--AEAERIADLLGPLSAGV-Y-AGAVMHVPIESARDATARAREAGADCAVAVGGGS 100 (358)
T ss_dssp GGHHHHHHHTTCSCEEEECCGGGH--HHHHHHHHHHGGGEEEE-E-CCCCTTCBHHHHHHHHHHHHHHTCSEEEEEESHH
T ss_pred HHHHHHHHHhCCCeEEEEeCCcHH--HHHHHHHHHhccCCEEE-e-cCCcCCCCHHHHHHHHHHhhccCCCEEEEeCCcH
Confidence 446777889999999999865543 34677888888775432 2 233333345677888888888899999987654
Q ss_pred -CcHHHHHHHHHHcCCCCCCeEEEecC
Q 003093 140 -NRGPVVFHVAQYLGMLGTGYVWIATS 165 (848)
Q Consensus 140 -~~~~~~~~~a~~~g~~~~~~~wi~~~ 165 (848)
-+...++.. ..++ .++-|-|.
T Consensus 101 viD~aK~iA~--~~~~---p~i~IPTT 122 (358)
T 3jzd_A 101 TTGLGKAIAL--ETGM---PIVAIPTT 122 (358)
T ss_dssp HHHHHHHHHH--HHCC---CEEEEECS
T ss_pred HHHHHHHHHh--ccCC---CEEEEeCC
Confidence 344444433 2333 45555554
No 308
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=45.10 E-value=1.1e+02 Score=26.69 Aligned_cols=58 Identities=10% Similarity=0.027 Sum_probs=41.9
Q ss_pred chHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEcc--CCcHHHHHHHHHHcC
Q 003093 87 NGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTH--YNRGPVVFHVAQYLG 153 (848)
Q Consensus 87 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~--~~~~~~~~~~a~~~g 153 (848)
.....+.+.|++.|..|... .+....+..++...+|+|++... ..++..+++.+++..
T Consensus 18 ~~~~~l~~~L~~~g~~v~~~---------~~~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~ 77 (154)
T 3gt7_A 18 TQAEHLKHILEETGYQTEHV---------RNGREAVRFLSLTRPDLIISDVLMPEMDGYALCRWLKGQP 77 (154)
T ss_dssp HHHHHHHHHHHTTTCEEEEE---------SSHHHHHHHHTTCCCSEEEEESCCSSSCHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHCCCEEEEe---------CCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCC
Confidence 45677888888888776422 12345667777788999999865 456778899888864
No 309
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=44.58 E-value=44 Score=32.85 Aligned_cols=78 Identities=6% Similarity=0.020 Sum_probs=53.4
Q ss_pred EEEEEEEE--cCCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccCCcHHHHHHHHH
Q 003093 73 REVIAIYV--DDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQ 150 (848)
Q Consensus 73 ~~vaii~~--dd~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~~~~~a~ 150 (848)
+.|+++.. +++|.......+.+++++.|..+.... ...+...-...+..+...++|.|++...... ...++.+.
T Consensus 4 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~-~~~~~~l~ 79 (275)
T 3d8u_A 4 YSIALIIPSLFEKACAHFLPSFQQALNKAGYQLLLGY---SDYSIEQEEKLLSTFLESRPAGVVLFGSEHS-QRTHQLLE 79 (275)
T ss_dssp CEEEEEESCSSCHHHHHHHHHHHHHHHHTSCEECCEE---CTTCHHHHHHHHHHHHTSCCCCEEEESSCCC-HHHHHHHH
T ss_pred eEEEEEeCCCccccHHHHHHHHHHHHHHCCCEEEEEc---CCCCHHHHHHHHHHHHhcCCCEEEEeCCCCC-HHHHHHHH
Confidence 46788874 355777888999999999998876432 1223344456677888888998888765433 35667777
Q ss_pred HcCC
Q 003093 151 YLGM 154 (848)
Q Consensus 151 ~~g~ 154 (848)
+.|.
T Consensus 80 ~~~i 83 (275)
T 3d8u_A 80 ASNT 83 (275)
T ss_dssp HHTC
T ss_pred hCCC
Confidence 7775
No 310
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=44.10 E-value=1.4e+02 Score=24.73 Aligned_cols=58 Identities=10% Similarity=0.092 Sum_probs=41.1
Q ss_pred chHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEcc--CCcHHHHHHHHHHcC
Q 003093 87 NGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTH--YNRGPVVFHVAQYLG 153 (848)
Q Consensus 87 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~--~~~~~~~~~~a~~~g 153 (848)
.....+.+.+++.|..|... . +....+..+....+|+|++... ..++..++++.++..
T Consensus 14 ~~~~~l~~~L~~~g~~v~~~---~------~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~ 73 (127)
T 3i42_A 14 AAAETFKELLEMLGFQADYV---M------SGTDALHAMSTRGYDAVFIDLNLPDTSGLALVKQLRALP 73 (127)
T ss_dssp HHHHHHHHHHHHTTEEEEEE---S------SHHHHHHHHHHSCCSEEEEESBCSSSBHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHcCCCEEEE---C------CHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhh
Confidence 45677888888888765432 1 2344566667788999999865 457788999998863
No 311
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=44.07 E-value=34 Score=35.40 Aligned_cols=78 Identities=9% Similarity=-0.011 Sum_probs=52.7
Q ss_pred EEEEEEEEc--CCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccCCcHHHHHHHHH
Q 003093 73 REVIAIYVD--DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQ 150 (848)
Q Consensus 73 ~~vaii~~d--d~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~~~~~a~ 150 (848)
+.|+++..+ ++|.......+.+++++.|..+..... ..+.......+..+...++|.|++...... ...++.+.
T Consensus 67 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~~~~l~ 142 (348)
T 3bil_A 67 NTIGVIVPSLINHYFAAMVTEIQSTASKAGLATIITNS---NEDATTMSGSLEFLTSHGVDGIICVPNEEC-ANQLEDLQ 142 (348)
T ss_dssp -CEEEEESCSSSHHHHHHHHHHHHHHHHTTCCEEEEEC---TTCHHHHHHHHHHHHHTTCSCEEECCCGGG-HHHHHHHH
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEeC---CCCHHHHHHHHHHHHhCCCCEEEEeCCCCC-hHHHHHHH
Confidence 468888743 567778889999999999998765422 123344456677777788999888764433 34666777
Q ss_pred HcCC
Q 003093 151 YLGM 154 (848)
Q Consensus 151 ~~g~ 154 (848)
+.|.
T Consensus 143 ~~~i 146 (348)
T 3bil_A 143 KQGM 146 (348)
T ss_dssp HC-C
T ss_pred hCCC
Confidence 7675
No 312
>2eq5_A 228AA long hypothetical hydantoin racemase; structural genomics, NPPSFA, national project on P structural and functional analyses; 2.20A {Pyrococcus horikoshii}
Probab=43.79 E-value=14 Score=35.72 Aligned_cols=66 Identities=11% Similarity=0.089 Sum_probs=38.0
Q ss_pred HcCcEEEEEEEEcCCCccchHHHHHHHH-hccCcEEEEeee--c-CCC--CChHHHHHHHHHHhcCCCeEEEEEccC
Q 003093 69 HYGWREVIAIYVDDDHGRNGIAALGDTL-AAKRCRISFKAP--L-SVE--ATEDEITDLLVKVALTESRIIVVHTHY 139 (848)
Q Consensus 69 ~~~w~~vaii~~dd~~g~~~~~~l~~~l-~~~g~~v~~~~~--~-~~~--~~~~d~~~~l~~i~~~~~~viv~~~~~ 139 (848)
..+ ++|+++....... ..+.+.+ ++.|..+..... + ... .....+...+.++.+.++|+||+.|..
T Consensus 113 ~~~-~rigVlat~~t~~----~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~~~l~~~~~~l~~~~~d~IvLgCT~ 184 (228)
T 2eq5_A 113 AYG-RRVGVLNLTEETP----KVIRSILGNNLIAEDHPSGVSNTLDLLTDWGRREVINAAKRLKEKGVEVIALGCTG 184 (228)
T ss_dssp TTC-SSEEEECSSSCCC----HHHHHHHGGGEEEEECCTTCCSGGGGGSHHHHHHHHHHHHHHHHTTCSEEEECCTH
T ss_pred HhC-CeEEEEecCcccH----HHHHHHHHHHhCccccCCceeeHHHhcChHHHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 467 8999998654322 3577888 888876422110 0 000 012334555666666688888887654
No 313
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=43.71 E-value=40 Score=33.65 Aligned_cols=78 Identities=6% Similarity=-0.150 Sum_probs=53.2
Q ss_pred EEEEEEEE--cCCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHH---HHHHHhcCCCeEEEEEccCCcHHHHHH
Q 003093 73 REVIAIYV--DDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITD---LLVKVALTESRIIVVHTHYNRGPVVFH 147 (848)
Q Consensus 73 ~~vaii~~--dd~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~---~l~~i~~~~~~viv~~~~~~~~~~~~~ 147 (848)
+.|+++.. +++|.......+.+++++.|..+..... .. +...-.. .+..+...++|.|++...... ...++
T Consensus 9 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~~--~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~~~~ 84 (290)
T 2rgy_A 9 GIIGLFVPTFFGSYYGTILKQTDLELRAVHRHVVVATG-CG--ESTPREQALEAVRFLIGRDCDGVVVISHDLH-DEDLD 84 (290)
T ss_dssp CEEEEECSCSCSHHHHHHHHHHHHHHHHTTCEEEEECC-CS--SSCHHHHHHHHHHHHHHTTCSEEEECCSSSC-HHHHH
T ss_pred CeEEEEeCCCCCchHHHHHHHHHHHHHHCCCEEEEEeC-CC--chhhhhhHHHHHHHHHhcCccEEEEecCCCC-HHHHH
Confidence 46888874 3557778889999999999998765322 11 2233344 677777789999998765433 34666
Q ss_pred HHHHcCC
Q 003093 148 VAQYLGM 154 (848)
Q Consensus 148 ~a~~~g~ 154 (848)
.+.+.|.
T Consensus 85 ~l~~~~i 91 (290)
T 2rgy_A 85 ELHRMHP 91 (290)
T ss_dssp HHHHHCS
T ss_pred HHhhcCC
Confidence 7777775
No 314
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=43.64 E-value=1.1e+02 Score=28.46 Aligned_cols=109 Identities=22% Similarity=0.170 Sum_probs=68.0
Q ss_pred cEEecccCCCCCCCCCCCceEeccCChHHHHHHHHHHHHHcCcEEEEEEEEcCCCccchHHHHHHHHhccCcEEEEeeec
Q 003093 30 PLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPL 109 (848)
Q Consensus 30 P~Is~~at~p~ls~~~~p~f~r~~p~d~~q~~ai~~~~~~~~w~~vaii~~dd~~g~~~~~~l~~~l~~~g~~v~~~~~~ 109 (848)
.+||=++|...+.+.-.-=+.-...+..+..+++...-++ + ++++++.-.+.. ...+.+.+.+ |.++... .+
T Consensus 54 VIISRGgta~~lr~~~~iPVV~I~~s~~Dil~al~~a~~~-~-~kIavvg~~~~~--~~~~~~~~ll---~~~i~~~-~~ 125 (196)
T 2q5c_A 54 AIISRGATSDYIKKSVSIPSISIKVTRFDTMRAVYNAKRF-G-NELALIAYKHSI--VDKHEIEAML---GVKIKEF-LF 125 (196)
T ss_dssp EEEEEHHHHHHHHTTCSSCEEEECCCHHHHHHHHHHHGGG-C-SEEEEEEESSCS--SCHHHHHHHH---TCEEEEE-EE
T ss_pred EEEECChHHHHHHHhCCCCEEEEcCCHhHHHHHHHHHHhh-C-CcEEEEeCcchh--hHHHHHHHHh---CCceEEE-Ee
Confidence 4666666655554421122455666777777877776554 4 488888754432 2344444444 4454432 22
Q ss_pred CCCCChHHHHHHHHHHhcCCCeEEEEEccCCcHHHHHHHHHHcCCC
Q 003093 110 SVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGML 155 (848)
Q Consensus 110 ~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~~~~~a~~~g~~ 155 (848)
. +..+....+.++++.+.++||-.+ ...+.|+++||.
T Consensus 126 ~---~~~e~~~~i~~l~~~G~~vvVG~~------~~~~~A~~~Gl~ 162 (196)
T 2q5c_A 126 S---SEDEITTLISKVKTENIKIVVSGK------TVTDEAIKQGLY 162 (196)
T ss_dssp C---SGGGHHHHHHHHHHTTCCEEEECH------HHHHHHHHTTCE
T ss_pred C---CHHHHHHHHHHHHHCCCeEEECCH------HHHHHHHHcCCc
Confidence 2 447889999999999999987533 357788999984
No 315
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=43.56 E-value=11 Score=38.26 Aligned_cols=52 Identities=12% Similarity=0.179 Sum_probs=39.9
Q ss_pred CcchhhhhHHHHhhhcC--ccccccchhH------HHHHHHHhhhhhhhccccceeeeee
Q 003093 532 QVVTIFWFSFSTMFFAH--KEKTVSALGR------LVLIIWLFVVLIINSSYTASLTSIL 583 (848)
Q Consensus 532 ~~~~~~~~~~~~l~~~~--~~~p~s~~~R------~~~~~w~~~~lil~~~Yta~L~s~L 583 (848)
++.+++|+++.++...| .-.|.+..+| ++.++|+++++.+.+.-.+.+...+
T Consensus 224 ~~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~ 283 (309)
T 3um7_A 224 SKLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWL 283 (309)
T ss_dssp CHHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999998665 4467777666 5899999999888887766555544
No 316
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=43.37 E-value=34 Score=31.20 Aligned_cols=64 Identities=13% Similarity=0.128 Sum_probs=42.7
Q ss_pred EEEEEEEcCCC-----ccchHHHHHHH----HhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccC
Q 003093 74 EVIAIYVDDDH-----GRNGIAALGDT----LAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY 139 (848)
Q Consensus 74 ~vaii~~dd~~-----g~~~~~~l~~~----l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~ 139 (848)
++++|...|+- -......+.+. +++.|+++.....++.+ .+.+...|++..+.++|+|+..+..
T Consensus 7 ~v~Ii~~GdEl~~G~i~D~n~~~l~~~~~~~l~~~G~~v~~~~iv~Dd--~~~I~~~l~~a~~~~~DlVittGG~ 79 (167)
T 2g2c_A 7 KSAIIVVSDRISTGTRENKALPLLQRLMSDELQDYSYELISEVVVPEG--YDTVVEAIATALKQGARFIITAGGT 79 (167)
T ss_dssp EEEEEEECHHHHHTSSCCCHHHHHHHHHCC----CEEEEEEEEEECSS--HHHHHHHHHHHHHTTCSEEEEESCC
T ss_pred EEEEEEECCcccCCceeccHHHHHHHhHHhHHHHCCCEEeEEEEeCCC--HHHHHHHHHHHHhCCCCEEEECCCC
Confidence 67777654432 12345677888 89999999887777753 4778888888766569999988643
No 317
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=43.04 E-value=40 Score=35.16 Aligned_cols=76 Identities=13% Similarity=0.060 Sum_probs=54.0
Q ss_pred cEEEEEEEEc----CCCccchHHHHHHHHhccC--cEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccCCcHHHH
Q 003093 72 WREVIAIYVD----DDHGRNGIAALGDTLAAKR--CRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVV 145 (848)
Q Consensus 72 w~~vaii~~d----d~~g~~~~~~l~~~l~~~g--~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~~ 145 (848)
-.+|++|+.+ ..|.....+.+.+..++.| +++.+.+..+. ..+....++.+.+.+.|+||..+.. ....+
T Consensus 26 ~~kIglv~~g~i~D~~f~~~~~~G~~~~~~~~G~~~~~~~~e~~~~---~~d~~~~l~~l~~~g~d~Ii~~g~~-~~~~~ 101 (356)
T 3s99_A 26 KLKVGFIYIGPPGDFGWTYQHDQARKELVEALGDKVETTFLENVAE---GADAERSIKRIARAGNKLIFTTSFG-YMDPT 101 (356)
T ss_dssp CEEEEEECSSCGGGSSHHHHHHHHHHHHHHHHTTTEEEEEECSCCT---THHHHHHHHHHHHTTCSEEEECSGG-GHHHH
T ss_pred CCEEEEEEccCCCchhHHHHHHHHHHHHHHHhCCceEEEEEecCCC---HHHHHHHHHHHHHCCCCEEEECCHH-HHHHH
Confidence 3689999953 3577777888888888888 88777665442 2577888999998999988876543 33345
Q ss_pred HHHHHH
Q 003093 146 FHVAQY 151 (848)
Q Consensus 146 ~~~a~~ 151 (848)
.+.|++
T Consensus 102 ~~vA~~ 107 (356)
T 3s99_A 102 VKVAKK 107 (356)
T ss_dssp HHHHTT
T ss_pred HHHHHH
Confidence 555543
No 318
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=42.83 E-value=1.6e+02 Score=26.39 Aligned_cols=93 Identities=5% Similarity=-0.060 Sum_probs=57.2
Q ss_pred HHHHHHHHHcCcEEEEEEEEcCCCccchHHHHHHHHhccCcEEEEeeec--CC--CCChHHHHHHHHHHh-cCCCeEEEE
Q 003093 61 AAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPL--SV--EATEDEITDLLVKVA-LTESRIIVV 135 (848)
Q Consensus 61 ~ai~~~~~~~~w~~vaii~~dd~~g~~~~~~l~~~l~~~g~~v~~~~~~--~~--~~~~~d~~~~l~~i~-~~~~~viv~ 135 (848)
..+.+.+...|--..+..|. +..+......+.++|...|+++...... .. ..+..|+.-.+.-+. ....|.+++
T Consensus 36 ~~l~~~~~~~g~l~~~~~Y~-~~~~~~~~~~~~~~L~~~g~~v~~~p~~~~~~~~~k~~~Dv~laiD~~~~a~~~d~~vL 114 (165)
T 2qip_A 36 NQFWYVATQEKEVVSAKAYA-IASNDPKQRQFHHILRGVGFEVMLKPYIQRRDGSAKGDWDVGITLDAIEIAPDVDRVIL 114 (165)
T ss_dssp HHHHHHHTTTEEEEEEEEEE-CCCCCHHHHHHHHHHHHHTCEEEECCCCCCSSCCCSCCCHHHHHHHHHHHGGGCSEEEE
T ss_pred HHHHHHHhcCCEEEEEEEEE-ccCCchhHHHHHHHHHHCCcEEEEEeeeeccCCccCCCccHHHHHHHHHhhccCCEEEE
Confidence 34455555555444555563 2233355678899999999998754322 11 123345443333322 246788888
Q ss_pred EccCCcHHHHHHHHHHc-CC
Q 003093 136 HTHYNRGPVVFHVAQYL-GM 154 (848)
Q Consensus 136 ~~~~~~~~~~~~~a~~~-g~ 154 (848)
.+...+-..+++.+++. |.
T Consensus 115 vSgD~DF~plv~~lr~~~G~ 134 (165)
T 2qip_A 115 VSGDGDFSLLVERIQQRYNK 134 (165)
T ss_dssp ECCCGGGHHHHHHHHHHHCC
T ss_pred EECChhHHHHHHHHHHHcCc
Confidence 88888999999999994 85
No 319
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=42.80 E-value=61 Score=32.97 Aligned_cols=63 Identities=11% Similarity=0.105 Sum_probs=46.8
Q ss_pred EEEEEEEE----cC-CCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccC
Q 003093 73 REVIAIYV----DD-DHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY 139 (848)
Q Consensus 73 ~~vaii~~----dd-~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~ 139 (848)
.+|++|+. +| .|.....+.+.+.+++.|.++.+.+... ..+....+..+.+.++|.||+.+..
T Consensus 5 ~~Ig~v~~~g~~~d~~f~~~~~~Gi~~~~~~~g~~~~~~~~~~----~~~~~~~l~~l~~~~~dgIi~~~~~ 72 (318)
T 2fqx_A 5 FVVGMVTDSGDIDDKSFNQQVWEGISRFAQENNAKCKYVTAST----DAEYVPSLSAFADENMGLVVACGSF 72 (318)
T ss_dssp CEEEEEESSSCTTSSSHHHHHHHHHHHHHHHTTCEEEEEECCS----GGGHHHHHHHHHHTTCSEEEEESTT
T ss_pred cEEEEEEcCCCCCCccHHHHHHHHHHHHHHHhCCeEEEEeCCC----HHHHHHHHHHHHHcCCCEEEECChh
Confidence 47889885 24 5777778899999999999887655421 2345667888888899999987643
No 320
>2vd3_A ATP phosphoribosyltransferase; metal-binding, glycosyltransferase, HISG, histidine, magnesi transferase; HET: HIS; 2.45A {Methanobacterium thermoautotrophicum}
Probab=42.29 E-value=23 Score=35.52 Aligned_cols=101 Identities=19% Similarity=0.254 Sum_probs=58.5
Q ss_pred CCCChHHh-hcCCCCeeEEeCchHHHHHHhhhCCCccCcccCCCHHHHHHHhhcCCCCCceEEEEccHHHHHHHHhcCCc
Q 003093 591 PIKGIDSL-RSSNYPIGYQVNSFARNYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRCE 669 (848)
Q Consensus 591 ~i~sl~dL-~~s~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 669 (848)
.+++++|| . +++|++.--.....||. +.+.. .+++...-.-|..-. -|-.|++++-.....-+.++ +
T Consensus 105 ~~~~~~~l~~--~~RIATkyp~l~~~yf~-~~gi~-~~ii~l~GsvE~ap~------~GlADaIvDivsTG~TLraN--g 172 (289)
T 2vd3_A 105 TIRGPEDIPR--GAVIATEFPGITENYLR-EHGID-AEVVELTGSTEIAPF------IGVADLITDLSSTGTTLRMN--H 172 (289)
T ss_dssp SCCSGGGCCT--TCEEEESCHHHHHHHHH-HTTCC-CEEEECSSCGGGTTT------TTSCSEEEEEESSTHHHHHT--T
T ss_pred CCCCHHHhcC--CCEEEeCcHHHHHHHHH-HcCCc-EEEEECCCceeeccC------CCcccEEEEEeCChHHHHHC--C
Confidence 56678888 5 78888877777888994 44543 344444322222221 26778888866666555555 5
Q ss_pred EEEeCCccccCCceeeecCCC-Cc-hHHHHHHHHhhh
Q 003093 670 FSIVGQVFTKNGWGFAFPRDS-PL-AVDISTAILKLS 704 (848)
Q Consensus 670 l~~~~~~~~~~~~~~~~~k~s-pl-~~~in~~i~~l~ 704 (848)
|..++..+ ...-.+...+.+ +. .+.++..+.+|.
T Consensus 173 L~~ie~I~-~ssA~LI~n~~s~~~k~~~i~~l~~rl~ 208 (289)
T 2vd3_A 173 LRVIDTIL-ESSVKLIANRESYATKSGIIEELRTGIR 208 (289)
T ss_dssp EEEEEEEE-EECEEEEECHHHHHHSHHHHHHHHHHHH
T ss_pred CEEeEEEE-eeEEEEEEccchhhhHHHHHHHHHHHHH
Confidence 77775444 444445555554 22 345555555554
No 321
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=42.23 E-value=38 Score=23.10 Aligned_cols=12 Identities=0% Similarity=-0.131 Sum_probs=4.7
Q ss_pred HHHHHHHHhhcc
Q 003093 757 YLMQIVHQFSRH 768 (848)
Q Consensus 757 f~~e~~~~~~~~ 768 (848)
+++.++++++++
T Consensus 29 ~~~~~~~RRr~~ 40 (44)
T 2ks1_B 29 LGIGLFMRRRHI 40 (44)
T ss_dssp HHHHHHHHTTTC
T ss_pred HHHHHHhhhhHh
Confidence 333344444333
No 322
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=42.05 E-value=45 Score=33.54 Aligned_cols=63 Identities=14% Similarity=0.155 Sum_probs=46.7
Q ss_pred EEEEEEEEc---C-CCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEcc
Q 003093 73 REVIAIYVD---D-DHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTH 138 (848)
Q Consensus 73 ~~vaii~~d---d-~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~ 138 (848)
.+|++|+.+ | .|.....+.+.+.+++.|.++.+.+... +..+....+..+.+.++|.||+.+.
T Consensus 6 ~~Ig~v~~~~~~d~~f~~~~~~gi~~~~~~~g~~~~~~~~~~---~~~~~~~~l~~l~~~~vdgIi~~~~ 72 (296)
T 2hqb_A 6 GMVGLLVEDTIDDQGWNRKAYEGLLNIHSNLDVDVVLEEGVN---SEQKAHRRIKELVDGGVNLIFGHGH 72 (296)
T ss_dssp CEEEEECCCC----CCTHHHHHHHHHHHHHSCCEEEEECCCC---SHHHHHHHHHHHHHTTCCEEEECST
T ss_pred cEEEEEECCCCCCCcHHHHHHHHHHHHHHHhCCeEEEEeCCC---CHHHHHHHHHHHHHCCCCEEEEcCH
Confidence 478888752 4 7888888999999999999887643322 2345667788888889999998653
No 323
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=41.98 E-value=40 Score=33.73 Aligned_cols=78 Identities=5% Similarity=-0.025 Sum_probs=54.2
Q ss_pred EEEEEEEE-------cCCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccCCcHHHH
Q 003093 73 REVIAIYV-------DDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVV 145 (848)
Q Consensus 73 ~~vaii~~-------dd~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~~ 145 (848)
+.|+++.. ++.|.......+.+++++.|..+.... ...+...-...+..+...++|.|++...... ...
T Consensus 8 ~~Igvi~~~~~~~~~~~~f~~~~~~gi~~~a~~~g~~~~~~~---~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~-~~~ 83 (295)
T 3hcw_A 8 YKIGLVLKGSEEPIRLNPFYINVLLGISETCNQHGYGTQTTV---SNNMNDLMDEVYKMIKQRMVDAFILLYSKEN-DPI 83 (295)
T ss_dssp CEEEEECSCCCHHHHSCHHHHHHHHHHHHHHHTTTCEEEECC---CCSHHHHHHHHHHHHHTTCCSEEEESCCCTT-CHH
T ss_pred cEEEEEeecCCcccccChHHHHHHHHHHHHHHHCCCEEEEEc---CCCChHHHHHHHHHHHhCCcCEEEEcCcccC-hHH
Confidence 46888872 466778889999999999999876432 2222233455677788889999998754332 356
Q ss_pred HHHHHHcCC
Q 003093 146 FHVAQYLGM 154 (848)
Q Consensus 146 ~~~a~~~g~ 154 (848)
++.+.+.|.
T Consensus 84 ~~~l~~~~i 92 (295)
T 3hcw_A 84 KQMLIDESM 92 (295)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHhCCC
Confidence 777777776
No 324
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=41.96 E-value=1e+02 Score=25.50 Aligned_cols=58 Identities=14% Similarity=-0.030 Sum_probs=39.7
Q ss_pred chHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEcc--CCcHHHHHHHHHHcC
Q 003093 87 NGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTH--YNRGPVVFHVAQYLG 153 (848)
Q Consensus 87 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~--~~~~~~~~~~a~~~g 153 (848)
.....+...+++.|..+... .+....+..++...+|+|++... ..++..++++.++..
T Consensus 13 ~~~~~l~~~l~~~g~~v~~~---------~~~~~al~~l~~~~~dlvllD~~~p~~~g~~~~~~l~~~~ 72 (122)
T 3gl9_A 13 VLRKIVSFNLKKEGYEVIEA---------ENGQIALEKLSEFTPDLIVLXIMMPVMDGFTVLKKLQEKE 72 (122)
T ss_dssp HHHHHHHHHHHHTTCEEEEE---------SSHHHHHHHHTTBCCSEEEECSCCSSSCHHHHHHHHHTST
T ss_pred HHHHHHHHHHHHCCcEEEEe---------CCHHHHHHHHHhcCCCEEEEeccCCCCcHHHHHHHHHhcc
Confidence 35567777888888776521 12344566777788999998754 456777888887654
No 325
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=41.87 E-value=90 Score=24.56 Aligned_cols=70 Identities=16% Similarity=0.236 Sum_probs=48.8
Q ss_pred ceEeccCChHHHHHHHHHHHHHcCcEEEEEEEEcCCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHh
Q 003093 48 YFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVA 126 (848)
Q Consensus 48 ~f~r~~p~d~~q~~ai~~~~~~~~w~~vaii~~dd~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~ 126 (848)
...-..-.|...+.....+++..|..-..+||+.| ++..+.|..+.+..|.+|... .+.+||..-|.++.
T Consensus 52 tivvvvvddkewaekairfvkslgaqvliiiydqd---qnrleefsrevrrrgfevrtv------tspddfkkslerli 121 (134)
T 2l69_A 52 TIVVVVVDDKEWAEKAIRFVKSLGAQVLIIIYDQD---QNRLEEFSREVRRRGFEVRTV------TSPDDFKKSLERLI 121 (134)
T ss_dssp EEEEEECSSHHHHHHHHHHHHHHCCCCEEEEECSC---HHHHHHHHHHHHHTTCCEEEE------SSHHHHHHHHHHHH
T ss_pred eEEEEEEccHHHHHHHHHHHHhcCCeEEEEEEeCc---hhHHHHHHHHHHhcCceEEEe------cChHHHHHHHHHHH
Confidence 45555667788888888888888888777787544 466778888888888876532 13367776666543
No 326
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=41.82 E-value=23 Score=38.31 Aligned_cols=97 Identities=9% Similarity=0.045 Sum_probs=62.4
Q ss_pred HHHHHHHHHcCcEEEEEEEEcCCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccC-
Q 003093 61 AAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY- 139 (848)
Q Consensus 61 ~ai~~~~~~~~w~~vaii~~dd~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~- 139 (848)
..+.++++.+|-+++.+|++...+. ...+.+.+.|++.|+++.+ ..+....+...+...+..+++ ++|+||..+.+
T Consensus 80 ~~l~~~l~~~g~~rvlIVtd~~~~~-~~~~~v~~~L~~~gi~~~~-~~~~ge~~~~~v~~~~~~~~~-~~D~IIAvGGGS 156 (450)
T 1ta9_A 80 TRSYMYVKKWATKSAVVLADQNVWN-ICANKIVDSLSQNGMTVTK-LVFGGEASLVELDKLRKQCPD-DTQVIIGVGGGK 156 (450)
T ss_dssp GGHHHHHTTTCSSEEEEEEEHHHHH-HTHHHHHHHHHHTTCEEEE-EEECSCCCHHHHHHHHTTSCT-TCCEEEEEESHH
T ss_pred HHHHHHHHhcCCCEEEEEECccHHH-HHHHHHHHHHHHCCCeEEE-EeeCCCCCHHHHHHHHHHHhh-CCCEEEEeCCcH
Confidence 3456677778866898888655433 4678888999999988753 234433445667777777777 99999976543
Q ss_pred -CcHHHHHHHHHHcCCCCCCeEEEecC
Q 003093 140 -NRGPVVFHVAQYLGMLGTGYVWIATS 165 (848)
Q Consensus 140 -~~~~~~~~~a~~~g~~~~~~~wi~~~ 165 (848)
-+...++.. ..|+ .++-|-|.
T Consensus 157 viD~AK~iA~--~~gi---P~I~IPTT 178 (450)
T 1ta9_A 157 TMDSAKYIAH--SMNL---PSIICPTT 178 (450)
T ss_dssp HHHHHHHHHH--HTTC---CEEEEESS
T ss_pred HHHHHHHHHH--hcCC---CEEEEeCC
Confidence 455555542 2233 45555554
No 327
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=41.68 E-value=1.7e+02 Score=27.74 Aligned_cols=87 Identities=8% Similarity=-0.001 Sum_probs=58.3
Q ss_pred EEEEEEEEcCCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEE--EccC----CcHHHHH
Q 003093 73 REVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVV--HTHY----NRGPVVF 146 (848)
Q Consensus 73 ~~vaii~~dd~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~--~~~~----~~~~~~~ 146 (848)
.+|.+-....+.-.-+..-+...|+.+|.+|.+--. ... ...++..+++.+||+|.+ .+.. .....++
T Consensus 93 ~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~---~vp---~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~~i 166 (215)
T 3ezx_A 93 GLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGV---DVL---NENVVEEAAKHKGEKVLLVGSALMTTSMLGQKDLM 166 (215)
T ss_dssp CEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCS---SCC---HHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHHHH
T ss_pred CeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCC---CCC---HHHHHHHHHHcCCCEEEEEchhcccCcHHHHHHHH
Confidence 356555566666666777788899999999886432 122 344566777789999999 5543 4466688
Q ss_pred HHHHHcCCCCCCeEEEecC
Q 003093 147 HVAQYLGMLGTGYVWIATS 165 (848)
Q Consensus 147 ~~a~~~g~~~~~~~wi~~~ 165 (848)
.++++.|+...-.+|+++.
T Consensus 167 ~~l~~~~~~~~v~v~vGG~ 185 (215)
T 3ezx_A 167 DRLNEEKLRDSVKCMFGGA 185 (215)
T ss_dssp HHHHHTTCGGGSEEEEESS
T ss_pred HHHHHcCCCCCCEEEEECC
Confidence 8888888743334566554
No 328
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=41.32 E-value=63 Score=32.09 Aligned_cols=78 Identities=3% Similarity=-0.057 Sum_probs=52.8
Q ss_pred CcEEEEEEE-EcCCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccCCcHHHHHHHH
Q 003093 71 GWREVIAIY-VDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVA 149 (848)
Q Consensus 71 ~w~~vaii~-~dd~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~~~~~a 149 (848)
.-+.|+++. .+++|.......+.+++++.|..+.....-.. .. -...+..+.+.++|.|++....... ..++.+
T Consensus 11 ~~~~Igvi~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~---~~-~~~~~~~l~~~~vdgiIi~~~~~~~-~~~~~~ 85 (289)
T 3k9c_A 11 SSRLLGVVFELQQPFHGDLVEQIYAAATRRGYDVMLSAVAPS---RA-EKVAVQALMRERCEAAILLGTRFDT-DELGAL 85 (289)
T ss_dssp --CEEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEEBTT---BC-HHHHHHHHTTTTEEEEEEETCCCCH-HHHHHH
T ss_pred CCCEEEEEEecCCchHHHHHHHHHHHHHHCCCEEEEEeCCCC---HH-HHHHHHHHHhCCCCEEEEECCCCCH-HHHHHH
Confidence 345788887 12456677888999999999998876543221 12 4566778888899999998765444 556666
Q ss_pred HHcCC
Q 003093 150 QYLGM 154 (848)
Q Consensus 150 ~~~g~ 154 (848)
.+ |+
T Consensus 86 ~~-~i 89 (289)
T 3k9c_A 86 AD-RV 89 (289)
T ss_dssp HT-TS
T ss_pred Hc-CC
Confidence 55 65
No 329
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=40.75 E-value=1.1e+02 Score=25.82 Aligned_cols=58 Identities=7% Similarity=-0.051 Sum_probs=39.6
Q ss_pred chHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEcc--CCcHHHHHHHHHHcC
Q 003093 87 NGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTH--YNRGPVVFHVAQYLG 153 (848)
Q Consensus 87 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~--~~~~~~~~~~a~~~g 153 (848)
.....+...+++.|..|.. .. +....+..+....+|+|++... ..++..++++.++..
T Consensus 15 ~~~~~l~~~L~~~g~~v~~---~~------~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~lr~~~ 74 (136)
T 3t6k_A 15 TVAEMLELVLRGAGYEVRR---AA------SGEEALQQIYKNLPDALICDVLLPGIDGYTLCKRVRQHP 74 (136)
T ss_dssp HHHHHHHHHHHHTTCEEEE---ES------SHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHSG
T ss_pred HHHHHHHHHHHHCCCEEEE---eC------CHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHcCC
Confidence 3566777888888877642 11 2334556666788999999865 346778888888753
No 330
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2
Probab=40.62 E-value=25 Score=37.51 Aligned_cols=82 Identities=9% Similarity=0.056 Sum_probs=54.0
Q ss_pred HHHHHHHcCcEEEEEEEEcCCCcc-chHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccC--
Q 003093 63 IAEIVDHYGWREVIAIYVDDDHGR-NGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY-- 139 (848)
Q Consensus 63 i~~~~~~~~w~~vaii~~dd~~g~-~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~-- 139 (848)
+.++++ +| +++.+|+.+..... +..+.+.+.|+ |+++.......+..+.+.+...+..+++.++|+||..+.+
T Consensus 43 l~~~l~-~g-~r~liVtd~~~~~~~g~~~~v~~~L~--g~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsv 118 (408)
T 1oj7_A 43 LREQIP-HD-ARVLITYGGGSVKKTGVLDQVLDALK--GMDVLEFGGIEPNPAYETLMNAVKLVREQKVTFLLAVGGGSV 118 (408)
T ss_dssp HHHHSC-TT-CEEEEEECSSHHHHHSHHHHHHHHTT--TSEEEEECCCCSSCBHHHHHHHHHHHHHHTCCEEEEEESHHH
T ss_pred HHHHHh-cC-CEEEEEECCchhhhccHHHHHHHHhC--CCEEEEeCCcCCCcCHHHHHHHHHHHHHcCCCEEEEeCCchH
Confidence 455666 78 89988874442332 25677777776 7776544444444456778888888888899999977543
Q ss_pred CcHHHHHHH
Q 003093 140 NRGPVVFHV 148 (848)
Q Consensus 140 ~~~~~~~~~ 148 (848)
-+...++..
T Consensus 119 iD~AK~iA~ 127 (408)
T 1oj7_A 119 LDGTKFIAA 127 (408)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 455555444
No 331
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=40.56 E-value=95 Score=29.33 Aligned_cols=96 Identities=16% Similarity=0.055 Sum_probs=56.2
Q ss_pred HHHHHHHcCcEEEEEEE--EcCCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccCC
Q 003093 63 IAEIVDHYGWREVIAIY--VDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYN 140 (848)
Q Consensus 63 i~~~~~~~~w~~vaii~--~dd~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~ 140 (848)
+.++++...-++|++|- ...+-.......+.+++++.|.++....... .+..++.. .|+ ++|.|++.+ .
T Consensus 18 ~~~f~~~~~~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~--~~~~~~~~---~l~--~ad~I~l~G--G 88 (206)
T 3l4e_A 18 FTEFESNLQGKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIAT--ESLGEITT---KLR--KNDFIYVTG--G 88 (206)
T ss_dssp HHHHSCCCTTCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTT--SCHHHHHH---HHH--HSSEEEECC--S
T ss_pred HHHHHHHcCCCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecC--CChHHHHH---HHH--hCCEEEECC--C
Confidence 33344334448888884 1111113467889999999999866432211 23344444 443 368888876 3
Q ss_pred cHHHHHHHHHHcCCCC-------CCeEEEecCcc
Q 003093 141 RGPVVFHVAQYLGMLG-------TGYVWIATSWL 167 (848)
Q Consensus 141 ~~~~~~~~a~~~g~~~-------~~~~wi~~~~~ 167 (848)
....+++.+++.|+.. .|.+++++...
T Consensus 89 ~~~~l~~~L~~~gl~~~l~~~~~~G~p~~G~sAG 122 (206)
T 3l4e_A 89 NTFFLLQELKRTGADKLILEEIAAGKLYIGESAG 122 (206)
T ss_dssp CHHHHHHHHHHHTHHHHHHHHHHTTCEEEEETHH
T ss_pred CHHHHHHHHHHCChHHHHHHHHHcCCeEEEECHH
Confidence 4456788887777632 35567777643
No 332
>2hxw_A Major antigenic peptide PEB3; periplasmic binding protein, N-glycosylation, structural genomics; HET: FLC; 1.60A {Campylobacter jejuni} PDB: 3fjm_A 3fjg_A 3fir_A* 3fj7_A*
Probab=39.67 E-value=54 Score=31.34 Aligned_cols=40 Identities=10% Similarity=-0.055 Sum_probs=28.9
Q ss_pred HHHHHHHHHhCCCCcceEEeeCCCCCCCCChhHHHHHHhcCeeeEEeece
Q 003093 405 IDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDI 454 (848)
Q Consensus 405 ~dll~~i~~~l~~~~~~~~~~~~~~~~n~s~~~~i~~l~~g~~D~~~~~~ 454 (848)
-++++.+.++.|.++++.+ ++-..++.++. +.+|+++.+-
T Consensus 16 ~~~~~~F~~~~gi~V~~~~---------~~s~~l~~~l~-~~~Dv~~~~~ 55 (237)
T 2hxw_A 16 KDIANKYSEKTGVKVNVNF---------GPQATWFEKAK-KDADILFGAS 55 (237)
T ss_dssp HHHHHHHHHHHCCCEEEEE---------SSHHHHHHHHH-HHCSEEEESS
T ss_pred HHHHHHHHHHhCceEEEEe---------CChHHHHHHhc-cCCCEEEeCC
Confidence 3577777777788765533 34667888888 8999998754
No 333
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=39.13 E-value=93 Score=26.40 Aligned_cols=57 Identities=12% Similarity=0.019 Sum_probs=39.8
Q ss_pred chHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEcc--CCcHHHHHHHHHHc
Q 003093 87 NGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTH--YNRGPVVFHVAQYL 152 (848)
Q Consensus 87 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~--~~~~~~~~~~a~~~ 152 (848)
.....+...+++.|..|... .+....+..++...+|+|++... ..++..++++.++.
T Consensus 17 ~~~~~l~~~l~~~g~~v~~~---------~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~ 75 (140)
T 3grc_A 17 DIARLLNLMLEKGGFDSDMV---------HSAAQALEQVARRPYAAMTVDLNLPDQDGVSLIRALRRD 75 (140)
T ss_dssp HHHHHHHHHHHHTTCEEEEE---------CSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHCCCeEEEE---------CCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhC
Confidence 45667788888888875422 12345566677788999999754 45677888888873
No 334
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=38.83 E-value=60 Score=29.45 Aligned_cols=63 Identities=13% Similarity=0.090 Sum_probs=45.1
Q ss_pred EEEEEEEEcCCC--c---cchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEcc
Q 003093 73 REVIAIYVDDDH--G---RNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTH 138 (848)
Q Consensus 73 ~~vaii~~dd~~--g---~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~ 138 (848)
-+|++|...|+- | ......+...+++.|.++.....++. + +.+...+.+..+.++|+|+..+.
T Consensus 8 ~rv~ii~tGdEl~~G~i~Dsn~~~l~~~l~~~G~~v~~~~iv~D--d-~~i~~al~~a~~~~~DlVittGG 75 (164)
T 3pzy_A 8 RSARVIIASTRASSGEYEDRCGPIITEWLAQQGFSSAQPEVVAD--G-SPVGEALRKAIDDDVDVILTSGG 75 (164)
T ss_dssp CEEEEEEECHHHHC----CCHHHHHHHHHHHTTCEECCCEEECS--S-HHHHHHHHHHHHTTCSEEEEESC
T ss_pred CEEEEEEECCCCCCCceeeHHHHHHHHHHHHCCCEEEEEEEeCC--H-HHHHHHHHHHHhCCCCEEEECCC
Confidence 467777755532 2 34456788899999999887766663 4 67888887776557999998864
No 335
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=38.72 E-value=70 Score=32.44 Aligned_cols=79 Identities=4% Similarity=-0.018 Sum_probs=52.7
Q ss_pred EEEEEEEEc-CCCccchHHHHHHHHhcc-CcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccCCcH-HHHHHHH
Q 003093 73 REVIAIYVD-DDHGRNGIAALGDTLAAK-RCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRG-PVVFHVA 149 (848)
Q Consensus 73 ~~vaii~~d-d~~g~~~~~~l~~~l~~~-g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~-~~~~~~a 149 (848)
..|+++..+ +.|.......+.+++++. |..+..... ..+.......+..+...++|.|++....... ...++++
T Consensus 7 ~~Igvi~~~~~~~~~~~~~gi~~~a~~~~g~~l~i~~~---~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 83 (325)
T 2x7x_A 7 FRIGVAQCSDDSWRHKMNDEILREAMFYNGVSVEIRSA---GDDNSKQAEDVHYFMDEGVDLLIISANEAAPMTPIVEEA 83 (325)
T ss_dssp CEEEEEESCCSHHHHHHHHHHHHHHTTSSSCEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHH
T ss_pred eEEEEEecCCCHHHHHHHHHHHHHHHHcCCcEEEEeCC---CCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHH
Confidence 568887754 345566778888999998 988775432 1233444556777777899999987644332 3567777
Q ss_pred HHcCC
Q 003093 150 QYLGM 154 (848)
Q Consensus 150 ~~~g~ 154 (848)
.+.|+
T Consensus 84 ~~~~i 88 (325)
T 2x7x_A 84 YQKGI 88 (325)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 77775
No 336
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=38.56 E-value=19 Score=37.18 Aligned_cols=60 Identities=18% Similarity=0.156 Sum_probs=49.5
Q ss_pred CCCcchhhhhHHHHhhhcC--ccc--cccchhHHHHHHHHhhhhhhhccccceeeeeeeecccc
Q 003093 530 KRQVVTIFWFSFSTMFFAH--KEK--TVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLS 589 (848)
Q Consensus 530 ~~~~~~~~~~~~~~l~~~~--~~~--p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~ 589 (848)
..++..+|||++.++...| ... |.+..++++..+-.+.++++.+.-++-+.+-++.+...
T Consensus 92 ~~sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~~l~~~~~l~G~~l~a~~~giv~ak~srp~~r 155 (343)
T 3spc_A 92 VNGFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMARPKKR 155 (343)
T ss_dssp CCSHHHHHHHHHHHHSCCCCSSSEECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCC
T ss_pred cCCHHHHhheeeeeeEeecCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence 4578999999999999665 333 45788999999999999999999999888888776644
No 337
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=38.09 E-value=41 Score=34.38 Aligned_cols=79 Identities=5% Similarity=-0.049 Sum_probs=53.4
Q ss_pred EEEEEEEE--cCCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCC--CeEEEEEccCCc-HHHHHH
Q 003093 73 REVIAIYV--DDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTE--SRIIVVHTHYNR-GPVVFH 147 (848)
Q Consensus 73 ~~vaii~~--dd~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~--~~viv~~~~~~~-~~~~~~ 147 (848)
+.|+++.. ++.|.......+.+++++.|.++..... ..+...-...+..+...+ +|.||+...... ....++
T Consensus 6 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~l~~~~~---~~~~~~~~~~i~~l~~~~~~vdgiIi~~~~~~~~~~~~~ 82 (332)
T 2rjo_A 6 TTLACSFRSLTNPYYTAFNKGAQSFAKSVGLPYVPLTT---EGSSEKGIADIRALLQKTGGNLVLNVDPNDSADARVIVE 82 (332)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHHTCCEEEEEC---TTCHHHHHHHHHHHHHHTTTCEEEEECCSSHHHHHHHHH
T ss_pred cEEEEEecCCCcHHHHHHHHHHHHHHHHcCCEEEEecC---CCCHHHHHHHHHHHHHCCCCCCEEEEeCCCHHHHHHHHH
Confidence 46888874 3567777888999999999988765422 122344455667777677 999988765433 235677
Q ss_pred HHHHcCC
Q 003093 148 VAQYLGM 154 (848)
Q Consensus 148 ~a~~~g~ 154 (848)
.+.+.|+
T Consensus 83 ~~~~~~i 89 (332)
T 2rjo_A 83 ACSKAGA 89 (332)
T ss_dssp HHHHHTC
T ss_pred HHHHCCC
Confidence 7777775
No 338
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=37.58 E-value=56 Score=29.91 Aligned_cols=62 Identities=16% Similarity=0.087 Sum_probs=42.4
Q ss_pred EEEEEEEcCC-----CccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEcc
Q 003093 74 EVIAIYVDDD-----HGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTH 138 (848)
Q Consensus 74 ~vaii~~dd~-----~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~ 138 (848)
++++|...|+ .-......+.+.+++.|+++.....++.+ ...+...++++.+ ++|+|+..+.
T Consensus 5 ~v~IistGdEll~G~i~DtN~~~l~~~L~~~G~~v~~~~iv~Dd--~~~I~~~l~~a~~-~~DlVittGG 71 (172)
T 3kbq_A 5 NASVITVGNEILKGRTVNTNAAFIGNFLTYHGYQVRRGFVVMDD--LDEIGWAFRVALE-VSDLVVSSGG 71 (172)
T ss_dssp EEEEEEECHHHHTTSSCCHHHHHHHHHHHHTTCEEEEEEEECSC--HHHHHHHHHHHHH-HCSEEEEESC
T ss_pred EEEEEEEcccccCCcEEeHHHHHHHHHHHHCCCEEEEEEEeCCC--HHHHHHHHHHHHh-cCCEEEEcCC
Confidence 5677765543 12244567888889999998887777643 3677777776654 3788887753
No 339
>2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus anthracis}
Probab=37.52 E-value=86 Score=31.00 Aligned_cols=31 Identities=13% Similarity=0.274 Sum_probs=23.0
Q ss_pred CCeEEEEccCCchhHHHHHHhhccCCccEEe
Q 003093 3 GQTVAIIGPQDAVTSHVVSHVANELQVPLLS 33 (848)
Q Consensus 3 ~~V~aiIGp~~S~~~~ava~i~~~~~vP~Is 33 (848)
.++.+|+=+..+..+.++..+-+..++|+|.
T Consensus 64 ~g~d~iviaCNTas~~~l~~lr~~~~iPvig 94 (267)
T 2gzm_A 64 LNIKMLVIACNTATAVVLEEMQKQLPIPVVG 94 (267)
T ss_dssp TTCSEEEECCHHHHHHHHHHHHHHCSSCEEE
T ss_pred CCCCEEEEeCchhhHHHHHHHHHhCCCCEEe
Confidence 4677888766666555677777888899886
No 340
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=37.45 E-value=29 Score=34.58 Aligned_cols=81 Identities=12% Similarity=0.025 Sum_probs=53.2
Q ss_pred EEEEEEEEc----CCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccCCcH-HHHHH
Q 003093 73 REVIAIYVD----DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRG-PVVFH 147 (848)
Q Consensus 73 ~~vaii~~d----d~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~-~~~~~ 147 (848)
++|+++..+ ++|.......+.+++++.|.++.....- ...+.......+..+...++|.|++....... ...++
T Consensus 6 ~~Ig~v~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~~~~ 84 (289)
T 3brs_A 6 YYMICIPKVLDDSSDFWSVLVEGAQMAAKEYEIKLEFMAPE-KEEDYLVQNELIEEAIKRKPDVILLAAADYEKTYDAAK 84 (289)
T ss_dssp CEEEEECSCCCSSSHHHHHHHHHHHHHHHHHTCEEEECCCS-STTCHHHHHHHHHHHHHTCCSEEEECCSCTTTTHHHHT
T ss_pred cEEEEEeCCCCCCchHHHHHHHHHHHHHHHcCCEEEEecCC-CCCCHHHHHHHHHHHHHhCCCEEEEeCCChHHhHHHHH
Confidence 467887743 5677788899999999999887653211 01233444566777777899999887654332 35566
Q ss_pred HHHHcCC
Q 003093 148 VAQYLGM 154 (848)
Q Consensus 148 ~a~~~g~ 154 (848)
++.+.|.
T Consensus 85 ~~~~~~i 91 (289)
T 3brs_A 85 EIKDAGI 91 (289)
T ss_dssp TTGGGTC
T ss_pred HHHHCCC
Confidence 6666564
No 341
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=37.45 E-value=71 Score=31.52 Aligned_cols=78 Identities=8% Similarity=-0.032 Sum_probs=51.6
Q ss_pred EEEEEEEE--cCCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccCCcHHHHHHHHH
Q 003093 73 REVIAIYV--DDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQ 150 (848)
Q Consensus 73 ~~vaii~~--dd~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~~~~~a~ 150 (848)
++|+++.. +++|.......+.+++++.|..+.... ...+.......+..+...++|.|++....... .+...+.
T Consensus 8 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~-~~~~~l~ 83 (289)
T 1dbq_A 8 KSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGN---AWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPE-PLLAMLE 83 (289)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHHTCEEEEEE---CTTCHHHHHHHHHHHHHTTCSEEEEECSCCCH-HHHHHHH
T ss_pred CEEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEEc---CCCChHHHHHHHHHHHhCCCCEEEEEeccCCH-HHHHHHH
Confidence 47888874 356777788899999999999876532 22233455566777777899999887654322 2344444
Q ss_pred H-cCC
Q 003093 151 Y-LGM 154 (848)
Q Consensus 151 ~-~g~ 154 (848)
+ .|.
T Consensus 84 ~~~~i 88 (289)
T 1dbq_A 84 EYRHI 88 (289)
T ss_dssp HTTTS
T ss_pred hccCC
Confidence 4 454
No 342
>3mz1_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative, MI center for STR uctural genomics, MCSG; 1.88A {Sinorhizobium meliloti}
Probab=37.42 E-value=40 Score=33.39 Aligned_cols=71 Identities=11% Similarity=-0.033 Sum_probs=41.9
Q ss_pred CcccCCCHHHHHHHhhcCCCCCceEEEEccHHHHHHHHhcCCcEEEeCC--ccccCCceeeecCCCCchHHHHHHHHhh
Q 003093 627 RLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRCEFSIVGQ--VFTKNGWGFAFPRDSPLAVDISTAILKL 703 (848)
Q Consensus 627 ~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~k~spl~~~in~~i~~l 703 (848)
....+++.+....++.. |...+++-+... ....... .+..+.. ......++++.+++.+....+...+..+
T Consensus 215 ~~~~~~~~~~~~~~v~~----g~Gi~~lp~~~~-~~~~~~~-~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~l 287 (300)
T 3mz1_A 215 YTMAANESTTYLAAARA----GLGVIQAPLFMV-REDLRNG-TMVPVLPDWQVEPMPIYLVYPPNRHLSSRLRVFADWV 287 (300)
T ss_dssp EEEEESSHHHHHHHHHT----TCCBEEEEHHHH-HHHHHHT-SEEECCTTCBCCCEEEEEEECTTCCCCHHHHHHHHHH
T ss_pred ceEEECCHHHHHHHHHh----CCCEEeccHHHH-HHHHhCC-CeEEeCCCcCCCCccEEEEEcCcccCcHHHHHHHHHH
Confidence 34567889999999999 555566654433 3333332 4444433 2344567888888876555555444443
No 343
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=37.27 E-value=1.7e+02 Score=27.49 Aligned_cols=87 Identities=9% Similarity=-0.000 Sum_probs=57.5
Q ss_pred EEEEEEEEcCCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccC----CcHHHHHHH
Q 003093 73 REVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY----NRGPVVFHV 148 (848)
Q Consensus 73 ~~vaii~~dd~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~----~~~~~~~~~ 148 (848)
.+|.+....++.-.-+...+...|+.+|.+|.+-.. ... ....+..++..++|+|.+.+.. .....++++
T Consensus 89 ~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~---~vp---~~~l~~~~~~~~~d~v~lS~~~~~~~~~~~~~i~~ 162 (210)
T 1y80_A 89 GKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGV---DIE---PGKFVEAVKKYQPDIVGMSALLTTTMMNMKSTIDA 162 (210)
T ss_dssp CEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCS---SBC---HHHHHHHHHHHCCSEEEEECCSGGGTHHHHHHHHH
T ss_pred CEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCC---CCC---HHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHH
Confidence 366666666666666778888899999999886432 222 2344555666689999998753 345667788
Q ss_pred HHHcCCCCCCeEEEecC
Q 003093 149 AQYLGMLGTGYVWIATS 165 (848)
Q Consensus 149 a~~~g~~~~~~~wi~~~ 165 (848)
+++.|....-.+++++.
T Consensus 163 l~~~~~~~~~~v~vGG~ 179 (210)
T 1y80_A 163 LIAAGLRDRVKVIVGGA 179 (210)
T ss_dssp HHHTTCGGGCEEEEEST
T ss_pred HHhcCCCCCCeEEEECC
Confidence 88887643334555543
No 344
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=37.21 E-value=52 Score=32.69 Aligned_cols=78 Identities=4% Similarity=-0.178 Sum_probs=51.8
Q ss_pred EEEEEEEE------cCCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccCCcHHHHH
Q 003093 73 REVIAIYV------DDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVF 146 (848)
Q Consensus 73 ~~vaii~~------dd~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~~~ 146 (848)
+.|+++.. +++|.......+.+++++.|..+..... ..+...-...++.+...++|.|++....... ..+
T Consensus 5 ~~Ig~i~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~-~~~ 80 (287)
T 3bbl_A 5 FMIGYSWTQTEPGQVNHILDQFLSSMVREAGAVNYFVLPFPF---SEDRSQIDIYRDLIRSGNVDGFVLSSINYND-PRV 80 (287)
T ss_dssp CEEEECCCCCCTTCSCCTHHHHHHHHHHHHHHTTCEEEECCC---CSSTTCCHHHHHHHHTTCCSEEEECSCCTTC-HHH
T ss_pred eEEEEEecccccccCChhHHHHHHHHHHHHHHcCCEEEEEeC---CCchHHHHHHHHHHHcCCCCEEEEeecCCCc-HHH
Confidence 35777764 4567788889999999999998765321 1111223456677777889999987643322 456
Q ss_pred HHHHHcCC
Q 003093 147 HVAQYLGM 154 (848)
Q Consensus 147 ~~a~~~g~ 154 (848)
+.+.+.|.
T Consensus 81 ~~l~~~~i 88 (287)
T 3bbl_A 81 QFLLKQKF 88 (287)
T ss_dssp HHHHHTTC
T ss_pred HHHHhcCC
Confidence 67777675
No 345
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=37.15 E-value=73 Score=31.58 Aligned_cols=81 Identities=10% Similarity=-0.025 Sum_probs=53.1
Q ss_pred EEEEEEEE--cCCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccCCc-HHHHHHHH
Q 003093 73 REVIAIYV--DDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNR-GPVVFHVA 149 (848)
Q Consensus 73 ~~vaii~~--dd~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~-~~~~~~~a 149 (848)
+.|+++.. +++|.......+.+++++.|..+...... ...+...-...+..+...++|.|++...... ....++++
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~~~~~~~~~ 80 (288)
T 1gud_A 2 AEYAVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDIFASP-SEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPVARA 80 (288)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCCEEEEECS-STTCHHHHHHHHHHHHTSSEEEEEECCSSSSTTHHHHHHH
T ss_pred cEEEEEeCCCCchHHHHHHHHHHHHHHHcCCEEEEeCCC-CCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHH
Confidence 35777774 35677778889999999999887654311 1122233445667777788999988654333 23567777
Q ss_pred HHcCC
Q 003093 150 QYLGM 154 (848)
Q Consensus 150 ~~~g~ 154 (848)
.+.|+
T Consensus 81 ~~~~i 85 (288)
T 1gud_A 81 WKKGI 85 (288)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 77775
No 346
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=37.05 E-value=15 Score=35.44 Aligned_cols=32 Identities=9% Similarity=0.196 Sum_probs=28.9
Q ss_pred CCeEEEEccCCchhHHHHHHhhccCCccEEec
Q 003093 3 GQTVAIIGPQDAVTSHVVSHVANELQVPLLSF 34 (848)
Q Consensus 3 ~~V~aiIGp~~S~~~~ava~i~~~~~vP~Is~ 34 (848)
.+|+.|+||..|+=.-....+++++++|+||.
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~~~g~~hIst 60 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSS 60 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHHCCEEECH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHCCceEcH
Confidence 36889999999999888899999999999974
No 347
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=36.88 E-value=65 Score=32.79 Aligned_cols=78 Identities=10% Similarity=-0.015 Sum_probs=53.2
Q ss_pred EEEEEEEE--cCCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccCCcHHHHHHHHH
Q 003093 73 REVIAIYV--DDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQ 150 (848)
Q Consensus 73 ~~vaii~~--dd~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~~~~~a~ 150 (848)
+.|+++.. ++.|.......+.+++++.|..+.... ...+...-...+..+...++|.|++....... ..++.+.
T Consensus 61 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~---~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-~~~~~l~ 136 (332)
T 2hsg_A 61 TTVGVIIPDISNIFYAELARGIEDIATMYKYNIILSN---SDQNQDKELHLLNNMLGKQVDGIIFMSGNVTE-EHVEELK 136 (332)
T ss_dssp CEEEEEEC--CCSHHHHHHHHHHHHHHHHTCEEEEEE---CCSHHHHHHHHHHHTSCCSSCCEEECCSSCCH-HHHHHHT
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEe---CCCChHHHHHHHHHHHhCCCcEEEEecCCCCH-HHHHHHH
Confidence 57888874 467888889999999999999876542 11122334456777777889998887654333 4566666
Q ss_pred HcCC
Q 003093 151 YLGM 154 (848)
Q Consensus 151 ~~g~ 154 (848)
+.|.
T Consensus 137 ~~~i 140 (332)
T 2hsg_A 137 KSPV 140 (332)
T ss_dssp TSSS
T ss_pred hCCC
Confidence 5554
No 348
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=36.65 E-value=75 Score=31.40 Aligned_cols=77 Identities=6% Similarity=-0.016 Sum_probs=51.9
Q ss_pred EEEEEEEE--cCCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccCCcHHHHHHHHH
Q 003093 73 REVIAIYV--DDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQ 150 (848)
Q Consensus 73 ~~vaii~~--dd~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~~~~~a~ 150 (848)
+.|+++.. +++|.......+.+++++.|..+..... ..+...-...+..+...++|.|++...... ...+..+.
T Consensus 9 ~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~~~~l~ 84 (285)
T 3c3k_A 9 GMLLVMVSNIANPFCAAVVKGIEKTAEKNGYRILLCNT---ESDLARSRSCLTLLSGKMVDGVITMDALSE-LPELQNII 84 (285)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHTHHHHTTCCSEEEECCCGGG-HHHHHHHH
T ss_pred CEEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEeC---CCCHHHHHHHHHHHHhCCCCEEEEeCCCCC-hHHHHHHh
Confidence 57888875 4567778889999999999998765431 223334456677777789999988754322 23455565
Q ss_pred HcCC
Q 003093 151 YLGM 154 (848)
Q Consensus 151 ~~g~ 154 (848)
.|.
T Consensus 85 -~~i 87 (285)
T 3c3k_A 85 -GAF 87 (285)
T ss_dssp -TTS
T ss_pred -cCC
Confidence 554
No 349
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=36.62 E-value=1.1e+02 Score=25.84 Aligned_cols=55 Identities=5% Similarity=-0.052 Sum_probs=33.9
Q ss_pred chHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccCCcHHHHHHHHHHc
Q 003093 87 NGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYL 152 (848)
Q Consensus 87 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~~~~~a~~~ 152 (848)
.....+...+++.|..|... . +....+..+....+|+|+ ....++..+++++++.
T Consensus 29 ~~~~~l~~~L~~~g~~v~~~---~------~~~~al~~l~~~~~dlvi--~~~~~g~~~~~~l~~~ 83 (137)
T 2pln_A 29 VLGGEIEKGLNVKGFMADVT---E------SLEDGEYLMDIRNYDLVM--VSDKNALSFVSRIKEK 83 (137)
T ss_dssp HHHHHHHHHHHHTTCEEEEE---S------CHHHHHHHHHHSCCSEEE--ECSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcEEEEe---C------CHHHHHHHHHcCCCCEEE--EcCccHHHHHHHHHhc
Confidence 35566777777777765421 1 123344455556788888 5555677788888775
No 350
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=36.18 E-value=93 Score=21.17 Aligned_cols=7 Identities=0% Similarity=-0.083 Sum_probs=2.7
Q ss_pred HHHHhhc
Q 003093 761 IVHQFSR 767 (848)
Q Consensus 761 ~~~~~~~ 767 (848)
+++++++
T Consensus 32 ~~~RRRr 38 (44)
T 2l2t_A 32 VYVRRKS 38 (44)
T ss_dssp HHHHTTC
T ss_pred HHhhhhh
Confidence 3333333
No 351
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=35.94 E-value=1.8e+02 Score=24.69 Aligned_cols=60 Identities=18% Similarity=0.238 Sum_probs=40.2
Q ss_pred chHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccC--CcHHHHHHHHHHcC
Q 003093 87 NGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY--NRGPVVFHVAQYLG 153 (848)
Q Consensus 87 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~--~~~~~~~~~a~~~g 153 (848)
.....+...+++.|....... . .+....+..+....+|+|++.... .++..++++.++.+
T Consensus 16 ~~~~~l~~~L~~~~~~~~v~~-~------~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~ 77 (144)
T 3kht_A 16 DDIALIRRVLDRKDIHCQLEF-V------DNGAKALYQVQQAKYDLIILDIGLPIANGFEVMSAVRKPG 77 (144)
T ss_dssp HHHHHHHHHHHHTTCCEEEEE-E------SSHHHHHHHHTTCCCSEEEECTTCGGGCHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHhcCCCeeEEE-E------CCHHHHHHHhhcCCCCEEEEeCCCCCCCHHHHHHHHHhcc
Confidence 456778888888887632211 1 233456677777889999998654 45677888888743
No 352
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=35.57 E-value=2e+02 Score=24.19 Aligned_cols=57 Identities=11% Similarity=-0.060 Sum_probs=39.9
Q ss_pred chHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccC--CcHHHHHHHHHHc
Q 003093 87 NGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY--NRGPVVFHVAQYL 152 (848)
Q Consensus 87 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~--~~~~~~~~~a~~~ 152 (848)
.....+...++..|..|... .+....+..++...+|+|++.... .++..++++.++.
T Consensus 18 ~~~~~l~~~L~~~g~~v~~~---------~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~ 76 (142)
T 3cg4_A 18 HVRIAVKTILSDAGFHIISA---------DSGGQCIDLLKKGFSGVVLLDIMMPGMDGWDTIRAILDN 76 (142)
T ss_dssp HHHHHHHHHHHHTTCEEEEE---------SSHHHHHHHHHTCCCEEEEEESCCSSSCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCeEEEEe---------CCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhh
Confidence 45677788888888765421 123455666777789999998653 4677889888873
No 353
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=35.04 E-value=39 Score=33.63 Aligned_cols=79 Identities=9% Similarity=0.032 Sum_probs=47.1
Q ss_pred EEEEEEEE--cCCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccCCcHHHHHHHHH
Q 003093 73 REVIAIYV--DDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQ 150 (848)
Q Consensus 73 ~~vaii~~--dd~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~~~~~a~ 150 (848)
++|+++.. ++.|.......+.+++++.|.++... +....+.......+..+...++|.|++....... ..++.+.
T Consensus 9 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-~~~~~l~ 85 (290)
T 3clk_A 9 NVIAAVVSSVRTNFAQQILDGIQEEAHKNGYNLIIV--YSGSADPEEQKHALLTAIERPVMGILLLSIALTD-DNLQLLQ 85 (290)
T ss_dssp CEEEEECCCCSSSHHHHHHHHHHHHHHTTTCEEEEE--C----------CHHHHHHSSCCSEEEEESCC-----CHHHHH
T ss_pred CEEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEE--eCCCCCHHHHHHHHHHHHhcCCCEEEEecccCCH-HHHHHHH
Confidence 46888874 46678888899999999999987653 0111111233445677777889999987654322 4556666
Q ss_pred HcCC
Q 003093 151 YLGM 154 (848)
Q Consensus 151 ~~g~ 154 (848)
+.|.
T Consensus 86 ~~~i 89 (290)
T 3clk_A 86 SSDV 89 (290)
T ss_dssp CC--
T ss_pred hCCC
Confidence 6564
No 354
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=34.80 E-value=85 Score=29.19 Aligned_cols=69 Identities=20% Similarity=0.097 Sum_probs=47.0
Q ss_pred HcCcEEEEEEEEcCC-----CccchHHHHHHHHhc---cCcEEEEeeecCCCCChHHHHHHHHHHhc-CCCeEEEEEccC
Q 003093 69 HYGWREVIAIYVDDD-----HGRNGIAALGDTLAA---KRCRISFKAPLSVEATEDEITDLLVKVAL-TESRIIVVHTHY 139 (848)
Q Consensus 69 ~~~w~~vaii~~dd~-----~g~~~~~~l~~~l~~---~g~~v~~~~~~~~~~~~~d~~~~l~~i~~-~~~~viv~~~~~ 139 (848)
-+.--++++|...|+ .-......+...+++ .|+++.....++.+ .+++...|.+..+ .++|+|+..+..
T Consensus 11 v~~~~rv~IistGdEl~~g~~~D~n~~~L~~~L~~~~~~G~~v~~~~iv~Dd--~~~I~~al~~a~~~~~~DlVIttGGt 88 (189)
T 1jlj_A 11 HDHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVPDE--IEEIKETLIDWCDEKELNLILTTGGT 88 (189)
T ss_dssp --CCCEEEEEEECHHHHTTSSCCHHHHHHHHHHHCTTTTCCEEEEEEEECSC--HHHHHHHHHHHHHTSCCSEEEEESCC
T ss_pred ccCCCEEEEEEECCccCCCcccchHHHHHHHHHhchhcCCcEEEEEEEeCCC--HHHHHHHHHHHhhcCCCCEEEEcCCC
Confidence 344457888875544 122345678888888 79999887777753 4778888887754 379999988654
No 355
>2oho_A Glutamate racemase; isomerase; 2.25A {Streptococcus pyogenes m1 gas} PDB: 2ohg_A 2ohv_A*
Probab=33.54 E-value=66 Score=32.01 Aligned_cols=31 Identities=19% Similarity=0.262 Sum_probs=22.3
Q ss_pred CCeEEEEccCCchhHHHHHHhhccCCccEEe
Q 003093 3 GQTVAIIGPQDAVTSHVVSHVANELQVPLLS 33 (848)
Q Consensus 3 ~~V~aiIGp~~S~~~~ava~i~~~~~vP~Is 33 (848)
.++++|+=+..+..+.++..+-+..++|+|.
T Consensus 73 ~g~d~iviaCNTas~~~l~~lr~~~~iPvig 103 (273)
T 2oho_A 73 QNVKMIVFACNTATAVAWEEVKAALDIPVLG 103 (273)
T ss_dssp TTCSEEEECCHHHHHHHHHHHHHHCSSCEEE
T ss_pred CCCCEEEEeCchHhHHHHHHHHHhCCCCEEe
Confidence 4677777766666555667777778888885
No 356
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=33.41 E-value=44 Score=28.65 Aligned_cols=67 Identities=12% Similarity=0.067 Sum_probs=44.1
Q ss_pred EEEEcCCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEcc--CCcHHHHHHHHHHcCC
Q 003093 77 AIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTH--YNRGPVVFHVAQYLGM 154 (848)
Q Consensus 77 ii~~dd~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~--~~~~~~~~~~a~~~g~ 154 (848)
+|.+|+. .....+...|++.|.+|+.. + .+-...+..++...+|+|++... ..++..+.++.++.+.
T Consensus 12 LiVdD~~---~~~~~l~~~L~~~G~~v~~~------a--~~g~eAl~~~~~~~~DlvllDi~mP~~~G~el~~~lr~~~i 80 (123)
T 2lpm_A 12 LVVEDES---MIAMLIEDTLCELGHEVAAT------A--SRMQEALDIARKGQFDIAIIDVNLDGEPSYPVADILAERNV 80 (123)
T ss_dssp EEESSST---TTSHHHHHHHHHHCCCCCBC------S--CCHHHHHHHHHHCCSSEEEECSSSSSCCSHHHHHHHHHTCC
T ss_pred EEEeCCH---HHHHHHHHHHHHCCCEEEEE------E--CCHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHcCCC
Confidence 3444444 34556777788888765321 1 23345667777789999998754 5677888899888664
No 357
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=33.08 E-value=1.8e+02 Score=25.14 Aligned_cols=59 Identities=10% Similarity=-0.049 Sum_probs=39.8
Q ss_pred chHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEcc--CCcHHHHHHHHHHcC
Q 003093 87 NGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTH--YNRGPVVFHVAQYLG 153 (848)
Q Consensus 87 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~--~~~~~~~~~~a~~~g 153 (848)
.....+...|++.|..++... .+-...+..++...+|+|++... .-++..++++.++..
T Consensus 23 ~~r~~l~~~L~~~G~~~v~~a--------~~g~~al~~~~~~~~DlillD~~MP~mdG~el~~~ir~~~ 83 (134)
T 3to5_A 23 TMRRIVKNLLRDLGFNNTQEA--------DDGLTALPMLKKGDFDFVVTDWNMPGMQGIDLLKNIRADE 83 (134)
T ss_dssp HHHHHHHHHHHHTTCCCEEEE--------SSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHcCCcEEEEE--------CCHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHhCC
Confidence 455677888888887643221 12233456666678999998754 457888999998754
No 358
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=33.06 E-value=47 Score=33.21 Aligned_cols=80 Identities=9% Similarity=-0.059 Sum_probs=54.4
Q ss_pred EEEEEEEEc--CCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccCCc-HHHHHHHH
Q 003093 73 REVIAIYVD--DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNR-GPVVFHVA 149 (848)
Q Consensus 73 ~~vaii~~d--d~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~-~~~~~~~a 149 (848)
++|+++..+ +.|.......+.+++++.|..+.....-. ..+...-...+..+.+.++|.|++...... ....++++
T Consensus 6 ~~Igvi~~~~~~~~~~~~~~g~~~~a~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~~~~ 84 (304)
T 3o1i_D 6 EKICAIYPHLKDSYWLSVNYGMVSEAEKQGVNLRVLEAGG-YPNKSRQEQQLALCTQWGANAIILGTVDPHAYEHNLKSW 84 (304)
T ss_dssp CEEEEEESCSCSHHHHHHHHHHHHHHHHHTCEEEEEECSS-TTCHHHHHHHHHHHHHHTCSEEEECCSSTTSSTTTHHHH
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCeEEEEcCCC-CCCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHHHH
Confidence 468888744 56778888999999999999887643321 113345566777777788999998755433 23456666
Q ss_pred HHcCC
Q 003093 150 QYLGM 154 (848)
Q Consensus 150 ~~~g~ 154 (848)
. .|+
T Consensus 85 ~-~~i 88 (304)
T 3o1i_D 85 V-GNT 88 (304)
T ss_dssp T-TTS
T ss_pred c-CCC
Confidence 6 665
No 359
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=32.61 E-value=2.1e+02 Score=24.01 Aligned_cols=58 Identities=9% Similarity=-0.058 Sum_probs=38.5
Q ss_pred chHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccC--CcHHHHHHHHHHcC
Q 003093 87 NGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY--NRGPVVFHVAQYLG 153 (848)
Q Consensus 87 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~--~~~~~~~~~a~~~g 153 (848)
.....+...++..|..+... . +....+..+....+|+|++.... .++..++++.++..
T Consensus 14 ~~~~~l~~~L~~~g~~v~~~---~------~~~~al~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~ 73 (138)
T 3c3m_A 14 MIVDVFVTMLERGGYRPITA---F------SGEECLEALNATPPDLVLLDIMMEPMDGWETLERIKTDP 73 (138)
T ss_dssp HHHHHHHHHHHHTTCEEEEE---S------SHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHcCceEEEe---C------CHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHcCc
Confidence 35567777788888776521 1 12334555666789999998654 46777888888753
No 360
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=32.45 E-value=1.7e+02 Score=24.68 Aligned_cols=58 Identities=9% Similarity=-0.100 Sum_probs=38.3
Q ss_pred chHHHHHHHHhc-cCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccC--CcHHHHHHHHHHc
Q 003093 87 NGIAALGDTLAA-KRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY--NRGPVVFHVAQYL 152 (848)
Q Consensus 87 ~~~~~l~~~l~~-~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~--~~~~~~~~~a~~~ 152 (848)
.....+...+++ .|..++.. . .+....+..++...+|+|++.... .++..++++.++.
T Consensus 19 ~~~~~l~~~L~~~~~~~~v~~--~------~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~ 79 (143)
T 3cnb_A 19 EFADMLTQFLENLFPYAKIKI--A------YNPFDAGDLLHTVKPDVVMLDLMMVGMDGFSICHRIKST 79 (143)
T ss_dssp HHHHHHHHHHHHHCTTCEEEE--E------CSHHHHHHHHHHTCCSEEEEETTCTTSCHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhccCccEEEE--E------CCHHHHHHHHHhcCCCEEEEecccCCCcHHHHHHHHHhC
Confidence 456677788887 78873322 1 123345556666789999998654 4677788888874
No 361
>2dwu_A Glutamate racemase; isomerase; HET: DGL; 1.60A {Bacillus anthracis}
Probab=31.78 E-value=1.8e+02 Score=28.82 Aligned_cols=109 Identities=6% Similarity=0.074 Sum_probs=58.6
Q ss_pred CCCeEEEEccCCchhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEeccCChHHHHHHHH-HHHHHcCcEEEEEEEE
Q 003093 2 EGQTVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIA-EIVDHYGWREVIAIYV 80 (848)
Q Consensus 2 ~~~V~aiIGp~~S~~~~ava~i~~~~~vP~Is~~at~p~ls~~~~p~f~r~~p~d~~q~~ai~-~~~~~~~w~~vaii~~ 80 (848)
+.++.+|+=+-.+..+.++..+-+..++|+|.. ..+.+ ..++.-+-++|+++..
T Consensus 67 ~~g~d~IViACNTas~~~l~~lr~~~~iPVigi-------------------------iep~~~~A~~~~~~~rIgVlaT 121 (276)
T 2dwu_A 67 QFPLKALVVACNTAAAATLAALQEALSIPVIGV-------------------------IHPGARAAIKVTKKGKIGVIGT 121 (276)
T ss_dssp TSCEEEEEECCHHHHHHHHHHHHHHCSSCEEES-------------------------HHHHHHHHHHHCSSSEEEEEEC
T ss_pred HCCCCEEEEeCCcHHHHHHHHHHHHCCCCEEec-------------------------cHHHHHHHHHhcCCCeEEEEeC
Confidence 457888887666666567777778888998852 01111 1122234567888764
Q ss_pred cCCCccchHHHHHHHHhcc--CcEEEEeeecCC-------C-----CChHHHHHHHHHHhcCCCeEEEEEccC
Q 003093 81 DDDHGRNGIAALGDTLAAK--RCRISFKAPLSV-------E-----ATEDEITDLLVKVALTESRIIVVHTHY 139 (848)
Q Consensus 81 dd~~g~~~~~~l~~~l~~~--g~~v~~~~~~~~-------~-----~~~~d~~~~l~~i~~~~~~viv~~~~~ 139 (848)
....-. ..+.+.+++. +.+|... ..+. + .....+...+..+++.++|+||+.|..
T Consensus 122 ~~T~~s---~~y~~~i~~~~~~~~v~~~-~~~~~v~~ve~g~~~~~~~~~~l~~~l~~l~~~~~D~IVLGCTh 190 (276)
T 2dwu_A 122 VGTIQS---NMYEKALHELDTYLKVHSH-ACPTLATVVENRLEDTAYVTQQVKQALLPLTKEDIDTLILGCTH 190 (276)
T ss_dssp HHHHHT---THHHHHHHHHCTTCEEEEE-ECTTHHHHHHHSTTCHHHHHHHHHHHHHHHHTSCCSEEEECSTT
T ss_pred hhhhhh---HHHHHHHHHhCCCCEEEee-eCHHHHHHHHcCCcCCHHHHHHHHHHHHHHHhcCCCEEEECCCC
Confidence 422111 1233444443 4554322 1221 0 011345566667777788999887654
No 362
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=31.72 E-value=1.4e+02 Score=25.43 Aligned_cols=56 Identities=14% Similarity=0.138 Sum_probs=36.3
Q ss_pred chHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccC--CcHHHHHHHHHH
Q 003093 87 NGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY--NRGPVVFHVAQY 151 (848)
Q Consensus 87 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~--~~~~~~~~~a~~ 151 (848)
.....+...+++.|..|.. .. +....+..++...+|+|++.... .++..++++.++
T Consensus 19 ~~~~~l~~~L~~~g~~v~~---~~------~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~ 76 (147)
T 2zay_A 19 PALAASISALSQEGFDIIQ---CG------NAIEAVPVAVKTHPHLIITEANMPKISGMDLFNSLKK 76 (147)
T ss_dssp GGGHHHHHHHHHHTEEEEE---ES------SHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCeEEE---eC------CHHHHHHHHHcCCCCEEEEcCCCCCCCHHHHHHHHHc
Confidence 3456667777777876652 11 22334455555679999998653 467778888887
No 363
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=31.53 E-value=97 Score=26.30 Aligned_cols=56 Identities=5% Similarity=0.024 Sum_probs=40.0
Q ss_pred chHHHHHHHHhc-cCcEEEEeeecCCCCChHHHHHHHHHHhc-CCCeEEEEEccCC---cHHHHHHHHHH
Q 003093 87 NGIAALGDTLAA-KRCRISFKAPLSVEATEDEITDLLVKVAL-TESRIIVVHTHYN---RGPVVFHVAQY 151 (848)
Q Consensus 87 ~~~~~l~~~l~~-~g~~v~~~~~~~~~~~~~d~~~~l~~i~~-~~~~viv~~~~~~---~~~~~~~~a~~ 151 (848)
.....+...+++ .|.+|... .+....+..++. ..+|+|++....+ ++..++++.++
T Consensus 15 ~~~~~l~~~L~~~~~~~v~~~---------~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~ 75 (140)
T 3lua_A 15 YEREKTKIIFDNIGEYDFIEV---------ENLKKFYSIFKDLDSITLIIMDIAFPVEKEGLEVLSAIRN 75 (140)
T ss_dssp HHHHHHHHHHHHHCCCEEEEE---------CSHHHHHTTTTTCCCCSEEEECSCSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCccEEEE---------CCHHHHHHHHhcCCCCcEEEEeCCCCCCCcHHHHHHHHHh
Confidence 456677788888 78876522 123456677777 8899999987655 56678888887
No 364
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=31.44 E-value=1.7e+02 Score=23.35 Aligned_cols=58 Identities=9% Similarity=0.074 Sum_probs=38.2
Q ss_pred chHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccC--CcHHHHHHHHHHcC
Q 003093 87 NGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY--NRGPVVFHVAQYLG 153 (848)
Q Consensus 87 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~--~~~~~~~~~a~~~g 153 (848)
.....+...++..|..+... . + ....+..+....+|++++.... ..+..++++.++..
T Consensus 12 ~~~~~l~~~l~~~g~~v~~~---~---~---~~~~~~~l~~~~~dlii~d~~~~~~~~~~~~~~l~~~~ 71 (119)
T 2j48_A 12 EAATVVCEMLTAAGFKVIWL---V---D---GSTALDQLDLLQPIVILMAWPPPDQSCLLLLQHLREHQ 71 (119)
T ss_dssp HHHHHHHHHHHHTTCEEEEE---S---C---HHHHHHHHHHHCCSEEEEECSTTCCTHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCcEEEEe---c---C---HHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcc
Confidence 45667788888888876532 1 2 2334445555679999988654 45677888888764
No 365
>1jfl_A Aspartate racemase; alpha-beta structure, HOMO-dimer, homologous domains, isomer; 1.90A {Pyrococcus horikoshii} SCOP: c.78.2.1 c.78.2.1 PDB: 2dx7_A* 1iu9_A
Probab=31.34 E-value=89 Score=29.97 Aligned_cols=39 Identities=10% Similarity=0.082 Sum_probs=21.0
Q ss_pred HHHHHHHcCcEEEEEEEEcCCCccchHHHHHHHHhccCcEEE
Q 003093 63 IAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRIS 104 (848)
Q Consensus 63 i~~~~~~~~w~~vaii~~dd~~g~~~~~~l~~~l~~~g~~v~ 104 (848)
.++.+...+-++|+++..... .....+.+.+++.|+++.
T Consensus 107 ~~~~a~~~~~~rigvlaT~~T---~~~~~y~~~l~~~g~~v~ 145 (228)
T 1jfl_A 107 TAKKVKELGFKKAGLLATTGT---IVSGVYEKEFSKYGVEIM 145 (228)
T ss_dssp HHHHHHHTTCSEEEEECCHHH---HHHTHHHHHHHHTTCEEE
T ss_pred HHHHHHHcCCCeEEEEecHHH---hhhhHHHHHHHHCCCeEE
Confidence 333333336678888864321 112345666777777653
No 366
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=31.29 E-value=2.5e+02 Score=24.01 Aligned_cols=58 Identities=7% Similarity=0.034 Sum_probs=38.1
Q ss_pred chHHHHHHHHhccCc--EEEEeeecCCCCChHHHHHHHHHHh---------cCCCeEEEEEcc--CCcHHHHHHHHHHcC
Q 003093 87 NGIAALGDTLAAKRC--RISFKAPLSVEATEDEITDLLVKVA---------LTESRIIVVHTH--YNRGPVVFHVAQYLG 153 (848)
Q Consensus 87 ~~~~~l~~~l~~~g~--~v~~~~~~~~~~~~~d~~~~l~~i~---------~~~~~viv~~~~--~~~~~~~~~~a~~~g 153 (848)
.....+.+.+++.|. .|... . +....+..++ ...+|+|++... ..++..++++.++..
T Consensus 15 ~~~~~l~~~L~~~g~~~~v~~~---~------~~~~al~~l~~~~~~~~~~~~~~dliilD~~l~~~~g~~~~~~lr~~~ 85 (152)
T 3heb_A 15 GHARLIEKNIRRAGVNNEIIAF---T------DGTSALNYLFGDDKSGRVSAGRAQLVLLDLNLPDMTGIDILKLVKENP 85 (152)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEE---S------SHHHHHHHHHCTTSSSGGGTTCBEEEEECSBCSSSBHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCCcceEEEe---C------CHHHHHHHHhccccccccccCCCCEEEEeCCCCCCcHHHHHHHHHhcc
Confidence 456778888888887 44321 1 2233445553 567999999754 457788999998843
No 367
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=31.21 E-value=76 Score=31.22 Aligned_cols=67 Identities=7% Similarity=0.035 Sum_probs=47.8
Q ss_pred HHcCcEEEEEEEEc--CCCccchHHHHHHHHhccCcE-EEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEc
Q 003093 68 DHYGWREVIAIYVD--DDHGRNGIAALGDTLAAKRCR-ISFKAPLSVEATEDEITDLLVKVALTESRIIVVHT 137 (848)
Q Consensus 68 ~~~~w~~vaii~~d--d~~g~~~~~~l~~~l~~~g~~-v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~ 137 (848)
+.-.-+.|+++..+ +.|.......+.+++++.|.. +... ....+...-...+..+...++|.|++..
T Consensus 6 ~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~---~~~~~~~~~~~~~~~l~~~~vdgiIi~~ 75 (277)
T 3hs3_A 6 YQKKSKMIGIIIPDLNNRFYAQIIDGIQEVIQKEGYTALISF---STNSDVKKYQNAIINFENNNVDGIITSA 75 (277)
T ss_dssp --CCCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEE---CSSCCHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred hcCCCCEEEEEeCCCCChhHHHHHHHHHHHHHHCCCCEEEEE---eCCCChHHHHHHHHHHHhCCCCEEEEcc
Confidence 33345678888855 567788889999999999998 6543 2222334556677888888999999887
No 368
>3guv_A Site-specific recombinase, resolvase family prote; structural genomics, PSI-2, protein structure initiative; 2.20A {Streptococcus pneumoniae}
Probab=30.70 E-value=2.9e+02 Score=24.61 Aligned_cols=39 Identities=8% Similarity=0.129 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhcCC--CeEEEEEccC------CcHHHHHHHHHHcCC
Q 003093 116 DEITDLLVKVALTE--SRIIVVHTHY------NRGPVVFHVAQYLGM 154 (848)
Q Consensus 116 ~d~~~~l~~i~~~~--~~viv~~~~~------~~~~~~~~~a~~~g~ 154 (848)
..+...|..++..+ .|+|++.--. .+...++..+.+.|.
T Consensus 60 p~l~~ll~~~~~g~~~~d~lvv~~ldRl~R~~~~~~~~~~~l~~~gv 106 (167)
T 3guv_A 60 IQFNRMMEDIKSGKDGVSFVLVFKLSRFARNAADVLSTLQIMQDYGV 106 (167)
T ss_dssp HHHHHHHHHHHTCTTCCSEEEESCGGGTCSSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCCCccEEEEEeCchhcCCHHHHHHHHHHHHHCCC
Confidence 56677777776655 6666665322 233334445555553
No 369
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=30.66 E-value=2e+02 Score=28.52 Aligned_cols=87 Identities=14% Similarity=-0.030 Sum_probs=59.3
Q ss_pred HHHHHHHHHcCcEEEEEEEEcCCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccC-
Q 003093 61 AAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY- 139 (848)
Q Consensus 61 ~ai~~~~~~~~w~~vaii~~dd~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~- 139 (848)
..+|.-.+..|-..+.++.+. .|..+..+.+...-+..++.|.....+ .+. . ++.+.+..++|.|++.+..
T Consensus 82 ~~~A~~y~~~GA~~IsVltd~-~~f~Gs~~~L~~ir~~v~lPVl~Kdfi-~d~--~----qi~ea~~~GAD~VlLi~a~L 153 (272)
T 3tsm_A 82 PALAKAYEEGGAACLSVLTDT-PSFQGAPEFLTAARQACSLPALRKDFL-FDP--Y----QVYEARSWGADCILIIMASV 153 (272)
T ss_dssp HHHHHHHHHTTCSEEEEECCS-TTTCCCHHHHHHHHHTSSSCEEEESCC-CST--H----HHHHHHHTTCSEEEEETTTS
T ss_pred HHHHHHHHHCCCCEEEEeccc-cccCCCHHHHHHHHHhcCCCEEECCcc-CCH--H----HHHHHHHcCCCEEEEccccc
Confidence 456666777898899888744 444456666665555567777644332 211 2 4667788999999998654
Q ss_pred --CcHHHHHHHHHHcCCC
Q 003093 140 --NRGPVVFHVAQYLGML 155 (848)
Q Consensus 140 --~~~~~~~~~a~~~g~~ 155 (848)
.+...++..++++||.
T Consensus 154 ~~~~l~~l~~~a~~lGl~ 171 (272)
T 3tsm_A 154 DDDLAKELEDTAFALGMD 171 (272)
T ss_dssp CHHHHHHHHHHHHHTTCE
T ss_pred CHHHHHHHHHHHHHcCCe
Confidence 3466789999999983
No 370
>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A
Probab=30.54 E-value=89 Score=30.58 Aligned_cols=86 Identities=12% Similarity=0.065 Sum_probs=57.2
Q ss_pred HHHHHHHHHcCcEEEEEEEEcCCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccC-
Q 003093 61 AAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY- 139 (848)
Q Consensus 61 ~ai~~~~~~~~w~~vaii~~dd~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~- 139 (848)
..+|...+.. -.-+.++. |..|..+..+.+...-+..++.|..+..+. +.+ ++.+++..++|+|.+.+..
T Consensus 64 ~~iA~~y~~~-A~~IsVlT-d~~~F~gs~~dL~~ir~~v~lPvLrKDfi~-----~~~--qi~ea~~~GAD~ilLi~a~l 134 (251)
T 1i4n_A 64 EDFIRMYDEL-ADAISILT-EKHYFKGDPAFVRAARNLTCRPILAKDFYI-----DTV--QVKLASSVGADAILIIARIL 134 (251)
T ss_dssp HHHHHHHHHH-CSEEEEEC-CCSSSCCCTHHHHHHHTTCCSCEEEECCCC-----STH--HHHHHHHTTCSEEEEEGGGS
T ss_pred HHHHHHHHHh-CCceEEEe-cccccCCCHHHHHHHHHhCCCCEEEeeCCC-----CHH--HHHHHHHcCCCEEEEecccC
Confidence 3444444443 45556554 666767777777766666677776554332 123 4666888999999998775
Q ss_pred --CcHHHHHHHHHHcCCC
Q 003093 140 --NRGPVVFHVAQYLGML 155 (848)
Q Consensus 140 --~~~~~~~~~a~~~g~~ 155 (848)
.+...++..|+++||.
T Consensus 135 ~~~~l~~l~~~a~~lGl~ 152 (251)
T 1i4n_A 135 TAEQIKEIYEAAEELGMD 152 (251)
T ss_dssp CHHHHHHHHHHHHTTTCE
T ss_pred CHHHHHHHHHHHHHcCCe
Confidence 3567799999999984
No 371
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=30.38 E-value=18 Score=36.41 Aligned_cols=58 Identities=9% Similarity=0.099 Sum_probs=40.2
Q ss_pred CCCcchhhhhHHHHhhhcCcc----ccccc----hhHHHHHHHHhhhhhhhccccceeeeeeeecc
Q 003093 530 KRQVVTIFWFSFSTMFFAHKE----KTVSA----LGRLVLIIWLFVVLIINSSYTASLTSILTVQK 587 (848)
Q Consensus 530 ~~~~~~~~~~~~~~l~~~~~~----~p~s~----~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~ 587 (848)
..++.+++|..+.++...+-. .|... ..+++.....+.++++.+.++|-+.+.+....
T Consensus 178 F~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~~~ 243 (285)
T 3rvy_A 178 FGTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAILN 243 (285)
T ss_dssp HSSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999877522 24333 23666666667789999999999888776543
No 372
>3cvg_A Putative metal binding protein; PSI-II, NYSGXRC, periplasmic, structural GENO protein structure initiative; 1.97A {Coccidioides immitis}
Probab=30.33 E-value=27 Score=35.25 Aligned_cols=74 Identities=12% Similarity=0.208 Sum_probs=48.4
Q ss_pred eeeHHHHHHHHHh---C---CCCcceEEeeCCCCCCCCChhHHHHHHhcCeeeEEeeceeeecCce--eeeee-cc-ccc
Q 003093 402 GFCIDVFTAAINL---L---PYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDIAIITNRT--KMADF-TQ-PYI 471 (848)
Q Consensus 402 G~~~dll~~i~~~---l---~~~~~~~~~~~~~~~~n~s~~~~i~~l~~g~~D~~~~~~~~t~~R~--~~~df-s~-p~~ 471 (848)
.+..+++..+.++ . +.++++.. ++...++.+|.+|++|+++..-....+.. ..+.+ .. |+.
T Consensus 33 ~~lp~ll~~F~~~~~~~~~P~v~v~l~~---------~~s~~l~~~l~~G~~Dl~i~~~~~~~~~l~~~~~~~~~~~~l~ 103 (294)
T 3cvg_A 33 GLVKELADAFIKSKVDSGSAPFKVAWYK---------SDTTVTINYLKDGIVDVGITYSPVAERISIKHGISESPSYYAF 103 (294)
T ss_dssp THHHHHHHHHHHHHHSCC---CEEEEEE---------CCHHHHHHHHHTTSCSEEEESCHHHHHHHHHTTSBCSSCEEEE
T ss_pred HHHHHHHHHHHhhhcccCCCCeEEEEEe---------CCHHHHHHHHHcCCCcEEEEcCchhhhHHHhCCcccceeeeEE
Confidence 4566788888888 6 56644443 45889999999999999986322211110 11122 24 888
Q ss_pred ccceEEEEeccCC
Q 003093 472 ESGLVVVAPVRKL 484 (848)
Q Consensus 472 ~~~~~~v~~~~~~ 484 (848)
...+++++|...+
T Consensus 104 ~d~lvlv~~~~hp 116 (294)
T 3cvg_A 104 RDHFMLIGPPSNP 116 (294)
T ss_dssp EEEEEEEECTTCT
T ss_pred eccEEEEecCCCh
Confidence 8999999987663
No 373
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=29.88 E-value=23 Score=33.63 Aligned_cols=85 Identities=16% Similarity=0.139 Sum_probs=51.3
Q ss_pred eEEEEccCCchhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEecc-CChHHHHHHHHHHHHHcCcEEEEEEEEcCC
Q 003093 5 TVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTT-QSDQYQMAAIAEIVDHYGWREVIAIYVDDD 83 (848)
Q Consensus 5 V~aiIGp~~S~~~~ava~i~~~~~vP~Is~~at~p~ls~~~~p~f~r~~-p~d~~q~~ai~~~~~~~~w~~vaii~~dd~ 83 (848)
+..++||..|+=.-....+++++++|+||.+. ++|-. .+.+..+..+.+++..-. +.+|+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~istGd------------llR~~i~~~t~lg~~~~~~~~~G~------lvpd~- 62 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHISTGD------------ILREAVQKGTPLGKKAKEYMERGE------LVPDD- 62 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEHHH------------HHHHHHHHTCHHHHHHHHHHHHTC------CCCHH-
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEEcHHH------------HHHHHHHhcChhhhhHHHHHhcCC------cCCHH-
Confidence 46789999999988889999999999998532 12211 122334555555555433 22222
Q ss_pred CccchHHHHHHHHhccCcEEEEeeecCCCC
Q 003093 84 HGRNGIAALGDTLAAKRCRISFKAPLSVEA 113 (848)
Q Consensus 84 ~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~ 113 (848)
-..+.+.+.+.+.+.-| -..||...
T Consensus 63 ---iv~~lv~~~l~~~~~~i--lDGfPRt~ 87 (206)
T 3sr0_A 63 ---LIIALIEEVFPKHGNVI--FDGFPRTV 87 (206)
T ss_dssp ---HHHHHHHHHCCSSSCEE--EESCCCSH
T ss_pred ---HHHHHHHHhhccCCceE--ecCCchhH
Confidence 23455666666655422 24677653
No 374
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=29.73 E-value=1.6e+02 Score=24.71 Aligned_cols=58 Identities=7% Similarity=-0.039 Sum_probs=38.5
Q ss_pred chHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCC-CeEEEEEcc--CCcHHHHHHHHHHcC
Q 003093 87 NGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTE-SRIIVVHTH--YNRGPVVFHVAQYLG 153 (848)
Q Consensus 87 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~-~~viv~~~~--~~~~~~~~~~a~~~g 153 (848)
.....+.+.+++.|.+|... . +....+..+.... +|+|++... ..++..+++++++.+
T Consensus 18 ~~~~~l~~~L~~~g~~v~~~---~------~~~~a~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~ 78 (136)
T 3hdv_A 18 VNREALILYLKSRGIDAVGA---D------GAEEARLYLHYQKRIGLMITDLRMQPESGLDLIRTIRASE 78 (136)
T ss_dssp HHHHHHHHHHHHTTCCEEEE---S------SHHHHHHHHHHCTTEEEEEECSCCSSSCHHHHHHHHHTST
T ss_pred HHHHHHHHHHHHcCceEEEe---C------CHHHHHHHHHhCCCCcEEEEeccCCCCCHHHHHHHHHhcC
Confidence 45667788888888776532 1 2233445555555 899998765 456778888888864
No 375
>3rf7_A Iron-containing alcohol dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: NAD EPE; 2.12A {Shewanella denitrificans}
Probab=29.57 E-value=69 Score=33.62 Aligned_cols=82 Identities=11% Similarity=0.041 Sum_probs=54.2
Q ss_pred HHHHHHHHcCc---EEEEEEEEcCCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCC---CeEEEE
Q 003093 62 AIAEIVDHYGW---REVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTE---SRIIVV 135 (848)
Q Consensus 62 ai~~~~~~~~w---~~vaii~~dd~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~---~~viv~ 135 (848)
.+.++++.++. +++.+|....-.. ..+.+.+++.|+.+.....+....+.+.+...+..+++.+ +|+||-
T Consensus 40 ~l~~~l~~~g~~~~~~~liVtd~~~~~----~~l~~~L~~~g~~~~~f~~v~~~pt~~~v~~~~~~~~~~~~~~~D~IIa 115 (375)
T 3rf7_A 40 QLDTVLEQERTDANDFVVFLVDDVHQH----KPLAARVPNKAHDLVIYVNVDDEPTTVQVDELTAQVKAFNTKLPVSVVG 115 (375)
T ss_dssp GHHHHHHTTCCSTTCCEEEEEEGGGTT----SHHHHHSCCCTTSEEEEECCSSCCBHHHHHHHHHHHHHHCSSCCSEEEE
T ss_pred HHHHHHHHhcccCCCeEEEEECchhhh----hHHHHHHHhcCCeEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCCEEEE
Confidence 46677777763 7787777543322 2467788878887755555655556678888888888766 999998
Q ss_pred EccC--CcHHHHHH
Q 003093 136 HTHY--NRGPVVFH 147 (848)
Q Consensus 136 ~~~~--~~~~~~~~ 147 (848)
.+.+ -+..+++.
T Consensus 116 vGGGS~iD~AK~iA 129 (375)
T 3rf7_A 116 LGGGSTMDLAKAVS 129 (375)
T ss_dssp EESHHHHHHHHHHH
T ss_pred eCCcHHHHHHHHHH
Confidence 7654 34444443
No 376
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=29.30 E-value=1.3e+02 Score=25.40 Aligned_cols=58 Identities=12% Similarity=0.121 Sum_probs=39.8
Q ss_pred chHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccC-------CcHHHHHHHHHHcC
Q 003093 87 NGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY-------NRGPVVFHVAQYLG 153 (848)
Q Consensus 87 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~-------~~~~~~~~~a~~~g 153 (848)
.....+...+++.|..|... . +....+..++...+|+|++.... ..+..+++++++..
T Consensus 14 ~~~~~l~~~L~~~g~~v~~~---~------~~~~a~~~l~~~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~ 78 (140)
T 2qr3_A 14 GVLTAVQLLLKNHFSKVITL---S------SPVSLSTVLREENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQY 78 (140)
T ss_dssp HHHHHHHHHHTTTSSEEEEE---C------CHHHHHHHHHHSCEEEEEEETTTTC-----CCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCcEEEEe---C------CHHHHHHHHHcCCCCEEEEeCCcCCCCCCCccHHHHHHHHHhhC
Confidence 45677888888888876532 1 22344556666789999998653 36777888888764
No 377
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=29.28 E-value=2.3e+02 Score=24.32 Aligned_cols=58 Identities=17% Similarity=0.204 Sum_probs=40.3
Q ss_pred chHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEcc--CCcHHHHHHHHHHcC
Q 003093 87 NGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTH--YNRGPVVFHVAQYLG 153 (848)
Q Consensus 87 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~--~~~~~~~~~~a~~~g 153 (848)
.....+...|++.|..|... .+....+..++...+|+|++... ..++..+++++++..
T Consensus 25 ~~~~~l~~~L~~~g~~v~~~---------~~~~~a~~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~ 84 (153)
T 3hv2_A 25 VILQRLQQLLSPLPYTLHFA---------RDATQALQLLASREVDLVISAAHLPQMDGPTLLARIHQQY 84 (153)
T ss_dssp HHHHHHHHHHTTSSCEEEEE---------SSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcccCcEEEEE---------CCHHHHHHHHHcCCCCEEEEeCCCCcCcHHHHHHHHHhHC
Confidence 45677888888888765521 12344556666678999999865 356778888888854
No 378
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=28.48 E-value=2.4e+02 Score=26.66 Aligned_cols=88 Identities=10% Similarity=0.035 Sum_probs=51.1
Q ss_pred HHHHHHHHHHcCc-EEEEEEEEcCCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHH-HHHHHHhcCCCeEEEEEc
Q 003093 60 MAAIAEIVDHYGW-REVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEIT-DLLVKVALTESRIIVVHT 137 (848)
Q Consensus 60 ~~ai~~~~~~~~w-~~vaii~~dd~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~-~~l~~i~~~~~~viv~~~ 137 (848)
.+++.+-.+.-.. -+|+.|.+|..- ....+.+++.|+.+.....-.. .+..++. ..+..|++.++|+||+.+
T Consensus 16 l~ali~~~~~~~l~~eI~~Visn~~~-----a~v~~~A~~~gIp~~~~~~~~~-~~r~~~d~~~~~~l~~~~~Dliv~ag 89 (211)
T 3p9x_A 16 AEAIIQSQKAGQLPCEVALLITDKPG-----AKVVERVKVHEIPVCALDPKTY-PSKEAYEIEVVQQLKEKQIDFVVLAG 89 (211)
T ss_dssp HHHHHHHHHTTCCSSEEEEEEESCSS-----SHHHHHHHTTTCCEEECCGGGS-SSHHHHHHHHHHHHHHTTCCEEEESS
T ss_pred HHHHHHHHHcCCCCcEEEEEEECCCC-----cHHHHHHHHcCCCEEEeChhhc-CchhhhHHHHHHHHHhcCCCEEEEeC
Confidence 4556655543322 267777777532 1355677888988754322111 1234443 355778888999999999
Q ss_pred cCCcHHHHHHHHHHcC
Q 003093 138 HYNRGPVVFHVAQYLG 153 (848)
Q Consensus 138 ~~~~~~~~~~~a~~~g 153 (848)
+......-+.++.+.|
T Consensus 90 y~~Il~~~~l~~~~~~ 105 (211)
T 3p9x_A 90 YMRLVGPTLLGAYEGR 105 (211)
T ss_dssp CCSCCCHHHHHHHTTS
T ss_pred chhhcCHHHHhhccCC
Confidence 8765544343443333
No 379
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=27.97 E-value=31 Score=34.50 Aligned_cols=54 Identities=9% Similarity=0.190 Sum_probs=44.8
Q ss_pred CCCcchhhhhHHHHhhhcC--ccccccchhHHHHHHHHhhhhhhhccccceeeeee
Q 003093 530 KRQVVTIFWFSFSTMFFAH--KEKTVSALGRLVLIIWLFVVLIINSSYTASLTSIL 583 (848)
Q Consensus 530 ~~~~~~~~~~~~~~l~~~~--~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~L 583 (848)
..++.+++|+++.++..-| .-.|.+..+|++.+++.++++.+...+.+.+...+
T Consensus 91 ~w~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l 146 (280)
T 3ukm_A 91 NWDFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRI 146 (280)
T ss_dssp CSSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3468899999999998665 55899999999999999999988888877765443
No 380
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=27.95 E-value=2.5e+02 Score=23.16 Aligned_cols=57 Identities=7% Similarity=-0.074 Sum_probs=38.2
Q ss_pred chHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEcc--CCcHHHHHHHHHHcC
Q 003093 87 NGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTH--YNRGPVVFHVAQYLG 153 (848)
Q Consensus 87 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~--~~~~~~~~~~a~~~g 153 (848)
.....+...++ .|..+... .+....+..+....+|+|++... ..++..+++++++..
T Consensus 15 ~~~~~l~~~l~-~~~~v~~~---------~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~ 73 (133)
T 3nhm_A 15 TMRETLRLLLS-GEFDCTTA---------ADGASGLQQALAHPPDVLISDVNMDGMDGYALCGHFRSEP 73 (133)
T ss_dssp HHHHHHHHHHT-TTSEEEEE---------SSHHHHHHHHHHSCCSEEEECSSCSSSCHHHHHHHHHHST
T ss_pred HHHHHHHHHHh-CCcEEEEE---------CCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhCC
Confidence 34556667777 67665421 12344556666788999999865 456788999998864
No 381
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=27.80 E-value=32 Score=34.29 Aligned_cols=69 Identities=9% Similarity=-0.095 Sum_probs=45.4
Q ss_pred CcEEEEEEEE-c--CCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccCCcH
Q 003093 71 GWREVIAIYV-D--DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRG 142 (848)
Q Consensus 71 ~w~~vaii~~-d--d~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~ 142 (848)
.-+.|+++.. + +.|.......+.+++++.|..+.....-... .+....+..+...++|.|++.......
T Consensus 10 ~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~---~~~~~~~~~l~~~~vdgiIi~~~~~~~ 81 (289)
T 3g85_A 10 SKPTIALYWSSDISVNIISRFLRGLQSKLAKQNYNYNVVICPYKT---DCLHLEKGISKENSFDAAIIANISNYD 81 (289)
T ss_dssp -CCEEEEEEETTSCGGGHHHHHHHHHHHHHHTTTCSEEEEEEECT---TCGGGCGGGSTTTCCSEEEESSCCHHH
T ss_pred CCceEEEEeccccchHHHHHHHHHHHHHHHHcCCeEEEEecCCCc---hhHHHHHHHHhccCCCEEEEecCCccc
Confidence 3467888887 2 5577788899999999999876543221111 122345666777899999987654443
No 382
>3f2i_A ALR0221 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG, function; 2.00A {Nostoc SP}
Probab=27.79 E-value=2.9e+02 Score=24.91 Aligned_cols=94 Identities=14% Similarity=0.054 Sum_probs=52.0
Q ss_pred cCChHHHHHHHHHHHHHcCcEEEEEEEEcCCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhc----C
Q 003093 53 TQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVAL----T 128 (848)
Q Consensus 53 ~p~d~~q~~ai~~~~~~~~w~~vaii~~dd~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~----~ 128 (848)
++.-..|++.+++.++..+..--.++.+.-.-.....+.+.+. .....+.....+.+. .+....+..+.+ .
T Consensus 26 t~~G~~qA~~~~~~L~~~~~~~~~i~sSp~~Ra~qTa~~l~~~--~~~~~~~~~~~L~~~---~~~~~~~~~l~~~~~~~ 100 (172)
T 3f2i_A 26 TQEGKQKTEKVAYRLVKLGRQFDLIVTSPLIRARQTAEILLAS--GLSCQLEESNHLAPN---GNIFNWLDYWLKPKNFP 100 (172)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCCSEEEECSSHHHHHHHHHHHHT--TSCSCEEECGGGSTT---CCHHHHHHHTHHHHCCC
T ss_pred CHHHHHHHHHHHHHHHhcCCCCCEEEECChHHHHHHHHHHHhc--CCCCCeEECcccCCc---cCHHHHHHHHHHhccCC
Confidence 3445678999999998755432233333333233333333332 122334443344333 334444555542 5
Q ss_pred CCeEEEEEccCCcHHHHHHHHHH
Q 003093 129 ESRIIVVHTHYNRGPVVFHVAQY 151 (848)
Q Consensus 129 ~~~viv~~~~~~~~~~~~~~a~~ 151 (848)
+.+.++++++.+....++..+-.
T Consensus 101 ~~~~vllVgH~P~l~~l~~~L~~ 123 (172)
T 3f2i_A 101 ENAQIAIVGHEPCLSNWTEILLW 123 (172)
T ss_dssp TTCEEEEEECTTHHHHHHHHHHH
T ss_pred CCCEEEEEeCChHHHHHHHHHhc
Confidence 67788889998888888877765
No 383
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=27.76 E-value=1.5e+02 Score=24.33 Aligned_cols=57 Identities=11% Similarity=0.040 Sum_probs=38.6
Q ss_pred chHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccC--CcHHHHHHHHHHc
Q 003093 87 NGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY--NRGPVVFHVAQYL 152 (848)
Q Consensus 87 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~--~~~~~~~~~a~~~ 152 (848)
.....+...+++.|..+.. .. +....+..++...+|+|++.... .++..++++.++.
T Consensus 13 ~~~~~l~~~L~~~g~~v~~---~~------~~~~al~~~~~~~~dlii~D~~~p~~~g~~~~~~lr~~ 71 (120)
T 3f6p_A 13 PIADILEFNLRKEGYEVHC---AH------DGNEAVEMVEELQPDLILLDIMLPNKDGVEVCREVRKK 71 (120)
T ss_dssp HHHHHHHHHHHHTTCEEEE---ES------SHHHHHHHHHTTCCSEEEEETTSTTTHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCEEEEE---eC------CHHHHHHHHhhCCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 4566777888888887653 11 23345666777889999998654 4566788887763
No 384
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=27.71 E-value=1e+02 Score=25.25 Aligned_cols=57 Identities=9% Similarity=0.081 Sum_probs=38.3
Q ss_pred chHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccCC---cHHHHHHHHHHc
Q 003093 87 NGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYN---RGPVVFHVAQYL 152 (848)
Q Consensus 87 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~---~~~~~~~~a~~~ 152 (848)
.....+...+++.|.++... . + ....+..++...+|+|++....+ ++..++++.++.
T Consensus 16 ~~~~~l~~~L~~~g~~v~~~---~---~---~~~a~~~~~~~~~dlvi~d~~~~~~~~g~~~~~~l~~~ 75 (127)
T 2gkg_A 16 ALSATLRSALEGRGFTVDET---T---D---GKGSVEQIRRDRPDLVVLAVDLSAGQNGYLICGKLKKD 75 (127)
T ss_dssp HHHHHHHHHHHHHTCEEEEE---C---C---HHHHHHHHHHHCCSEEEEESBCGGGCBHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhcCceEEEe---c---C---HHHHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcC
Confidence 45667778888888876521 1 2 23344555556799999986543 677889988886
No 385
>2nr1_A NR1 M2, M2; receptor, signal, postsynaptic membrane; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=27.65 E-value=17 Score=21.51 Aligned_cols=18 Identities=17% Similarity=0.551 Sum_probs=13.9
Q ss_pred CCcchhhhhHHHHhhhcC
Q 003093 531 RQVVTIFWFSFSTMFFAH 548 (848)
Q Consensus 531 ~~~~~~~~~~~~~l~~~~ 548 (848)
..+..++||+|++++..+
T Consensus 7 ~~l~aa~wF~WGvllnsg 24 (27)
T 2nr1_A 7 LTLSSAMWFSWGVLLNSG 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eehhhhHHHhhHhheecc
Confidence 346788999999988643
No 386
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=27.52 E-value=1.2e+02 Score=28.24 Aligned_cols=65 Identities=12% Similarity=0.109 Sum_probs=43.8
Q ss_pred EEEEEEEEcCCCc-----cchHHHHHHHHhccCcE--EEEeeecCCCCChHHHHHHHHHHhcC-CCeEEEEEccC
Q 003093 73 REVIAIYVDDDHG-----RNGIAALGDTLAAKRCR--ISFKAPLSVEATEDEITDLLVKVALT-ESRIIVVHTHY 139 (848)
Q Consensus 73 ~~vaii~~dd~~g-----~~~~~~l~~~l~~~g~~--v~~~~~~~~~~~~~d~~~~l~~i~~~-~~~viv~~~~~ 139 (848)
-++++|...|+-. ......+.+.+++.|.+ +.....++. +...+...|.++.+. ++|+|+..+..
T Consensus 4 ~rv~IIttGdEl~~G~i~D~n~~~L~~~L~~~G~~~~v~~~~iV~D--d~~~I~~al~~a~~~~~~DlVitTGGt 76 (195)
T 1di6_A 4 LRIGLVSISDRASSGVYQDKGIPALEEWLTSALTTPFELETRLIPD--EQAIIEQTLCELVDEMSCHLVLTTGGT 76 (195)
T ss_dssp EEEEEEEEECC-------CCHHHHHHHHHHHHBCSCEEEEEEEEES--CHHHHHHHHHHHHHTSCCSEEEEESCC
T ss_pred CEEEEEEECCCCCCCeEEchHHHHHHHHHHHcCCCCceEEEEEeCC--CHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 4677887555432 23446788888999887 555555554 347788888887664 79999988653
No 387
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=27.25 E-value=1.9e+02 Score=29.33 Aligned_cols=66 Identities=9% Similarity=-0.055 Sum_probs=47.0
Q ss_pred CcEEEEEEEEc--CCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccC
Q 003093 71 GWREVIAIYVD--DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY 139 (848)
Q Consensus 71 ~w~~vaii~~d--d~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~ 139 (848)
.-+.|+++..+ +.|.......+.+++++.|..+.... ...+.......+..+...++|.|++....
T Consensus 57 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~---~~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 124 (340)
T 1qpz_A 57 HTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGN---AWNNLEKQRAYLSMMAQKRVDGLLVMCSE 124 (340)
T ss_dssp CCSEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEE---CTTCHHHHHHHHHHHHHTTCSEEEECCSC
T ss_pred CCCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEe---CCCCHHHHHHHHHHHHcCCCCEEEEeCCC
Confidence 33578888853 56777888999999999999887532 12233445566777777899999987544
No 388
>3okf_A 3-dehydroquinate synthase; structural genomics, center for structural genomics of infec diseases, csgid, NAD, lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor}
Probab=27.13 E-value=1.2e+02 Score=31.94 Aligned_cols=95 Identities=9% Similarity=0.028 Sum_probs=59.7
Q ss_pred HHHHcCcEEEEEEEEcCCCccchHHHHHHHHhccCcEEEEeeecCCC---CChHHHHHHHHHHhcCCC---eEEEEEccC
Q 003093 66 IVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVE---ATEDEITDLLVKVALTES---RIIVVHTHY 139 (848)
Q Consensus 66 ~~~~~~w~~vaii~~dd~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~---~~~~d~~~~l~~i~~~~~---~viv~~~~~ 139 (848)
+++.++.+++.+|+....+. ...+.+.+.|++.|+++... .++.+ .+...+...+..+++.++ |+||..+.+
T Consensus 56 ~l~~~~~~rvlIVtd~~v~~-~~~~~v~~~L~~~g~~~~~~-~~~~gE~~kt~~~v~~~~~~l~~~~~~R~d~IIAvGGG 133 (390)
T 3okf_A 56 LLSLSAKQKVVIVTNHTVAP-LYAPAIISLLDHIGCQHALL-ELPDGEQYKTLETFNTVMSFLLEHNYSRDVVVIALGGG 133 (390)
T ss_dssp GGCCCTTCEEEEEEETTTHH-HHHHHHHHHHHHHTCEEEEE-EECSSGGGCBHHHHHHHHHHHHHTTCCTTCEEEEEESH
T ss_pred HHHhcCCCEEEEEECCcHHH-HHHHHHHHHHHHcCCeEEEE-EECCCcCCchHHHHHHHHHHHHhcCCCcCcEEEEECCc
Confidence 44455678999998666554 37788899999999876532 22222 244677788888887766 687776554
Q ss_pred --CcHHHHHHHHHHcCCCCCCeEEEecC
Q 003093 140 --NRGPVVFHVAQYLGMLGTGYVWIATS 165 (848)
Q Consensus 140 --~~~~~~~~~a~~~g~~~~~~~wi~~~ 165 (848)
-+...++......| -.++-|-|.
T Consensus 134 sv~D~ak~~Aa~~~rg---ip~I~IPTT 158 (390)
T 3okf_A 134 VIGDLVGFAAACYQRG---VDFIQIPTT 158 (390)
T ss_dssp HHHHHHHHHHHHBTTC---CEEEEEECS
T ss_pred HHhhHHHHHHHHhcCC---CCEEEeCCC
Confidence 34455554433334 345555554
No 389
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=26.83 E-value=1.7e+02 Score=25.28 Aligned_cols=58 Identities=14% Similarity=0.092 Sum_probs=40.8
Q ss_pred chHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccC--CcHHHHHHHHHHcC
Q 003093 87 NGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY--NRGPVVFHVAQYLG 153 (848)
Q Consensus 87 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~--~~~~~~~~~a~~~g 153 (848)
.....+...++..|..|... .+....+..+....+|+|++.... .++..++++.++..
T Consensus 18 ~~~~~l~~~L~~~g~~v~~~---------~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~ 77 (154)
T 2rjn_A 18 PILNSLKRLIKRLGCNIITF---------TSPLDALEALKGTSVQLVISDMRMPEMGGEVFLEQVAKSY 77 (154)
T ss_dssp HHHHHHHHHHHTTTCEEEEE---------SCHHHHHHHHTTSCCSEEEEESSCSSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCeEEEe---------CCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHHhC
Confidence 45677888888888876521 123456667777789999998654 46777888888754
No 390
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=26.77 E-value=1.3e+02 Score=27.49 Aligned_cols=63 Identities=14% Similarity=0.074 Sum_probs=42.2
Q ss_pred EEEEEEEcCCC-----ccchHHHHHHHHh---ccCcEEEEeeecCCCCChHHHHHHHHHHhcC-CCeEEEEEccC
Q 003093 74 EVIAIYVDDDH-----GRNGIAALGDTLA---AKRCRISFKAPLSVEATEDEITDLLVKVALT-ESRIIVVHTHY 139 (848)
Q Consensus 74 ~vaii~~dd~~-----g~~~~~~l~~~l~---~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~-~~~viv~~~~~ 139 (848)
+|++|...|+- -......+...++ +.|+++ ....++. +..++...|.+..+. ++|+||..+..
T Consensus 7 rv~IistGdE~~~G~i~Dsn~~~l~~~l~~l~~~G~~v-~~~iv~D--d~~~I~~~l~~~~~~~~~DlVittGG~ 78 (178)
T 2pbq_A 7 VIGVVTISDRASKGIYEDISGKAIIDYLKDVIITPFEV-EYRVIPD--ERDLIEKTLIELADEKGCSLILTTGGT 78 (178)
T ss_dssp EEEEEEECHHHHHTSSCCHHHHHHHHHHHHHBCSCCEE-EEEEECS--CHHHHHHHHHHHHHTSCCSEEEEESCC
T ss_pred EEEEEEeCCcCCCCCeecchHHHHHHHHHHHHhCCCEE-EEEEcCC--CHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 67777755431 1223456777666 899998 5555654 447788888887653 79999988643
No 391
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=26.73 E-value=1.2e+02 Score=25.59 Aligned_cols=58 Identities=14% Similarity=0.183 Sum_probs=40.9
Q ss_pred chHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccC----CcHHHHHHHHHHcC
Q 003093 87 NGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY----NRGPVVFHVAQYLG 153 (848)
Q Consensus 87 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~----~~~~~~~~~a~~~g 153 (848)
.....+...+++.|..|... .+....+..++...+|+|++.... .++..+++++++.+
T Consensus 17 ~~~~~l~~~L~~~g~~v~~~---------~~~~~a~~~l~~~~~dlvi~D~~l~~~~~~g~~~~~~l~~~~ 78 (136)
T 3kto_A 17 DARAALSKLLSPLDVTIQCF---------ASAESFMRQQISDDAIGMIIEAHLEDKKDSGIELLETLVKRG 78 (136)
T ss_dssp HHHHHHHHHHTTSSSEEEEE---------SSHHHHTTSCCCTTEEEEEEETTGGGBTTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCcEEEEe---------CCHHHHHHHHhccCCCEEEEeCcCCCCCccHHHHHHHHHhCC
Confidence 45677888888888876522 123445566677789999998654 45677888888875
No 392
>4ecf_A ABC-type phosphate transport system, periplasmic; ABC transporter, phosphate transport receptor; HET: MSE; 1.55A {Lactobacillus brevis}
Probab=26.70 E-value=73 Score=31.41 Aligned_cols=71 Identities=6% Similarity=-0.048 Sum_probs=48.0
Q ss_pred eeHHHHHHHHHhC-CCCcceEEeeCCCCCCCCChhHHHHHHhcCeeeEEeeceeeecCc---eeeeeecccccccceEEE
Q 003093 403 FCIDVFTAAINLL-PYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDIAIITNR---TKMADFTQPYIESGLVVV 478 (848)
Q Consensus 403 ~~~dll~~i~~~l-~~~~~~~~~~~~~~~~n~s~~~~i~~l~~g~~D~~~~~~~~t~~R---~~~~dfs~p~~~~~~~~v 478 (848)
+.-++++.+.++. +.++.+.. +.-...+.+|.+|++|+++.......+. ...+ -..|+..+.++++
T Consensus 17 ~l~~~~~~f~~~~P~v~i~v~~---------~~S~~~~~~l~~g~~Dig~~~~~~~~~e~~~~~~l-~~~~i~~d~lvvv 86 (264)
T 4ecf_A 17 LVEAAGEQYTGEHLGTFINVQG---------GGTGTGLSQIQEGAVQIGNSDLFAGEQKGINARQL-VDHRVAVVGITPI 86 (264)
T ss_dssp HHHHHHHHHHHHSTTEEEEEEE---------ECHHHHHHHHHHTSSSEEEESSCGGGSTTCCGGGE-ECCEEEEEEEEEE
T ss_pred HHHHHHHHHHHHCCCceEEEEe---------CCCHHHHHHHHcCCCchhhccCCCChhHHhhccCC-EEEEEEEEEEEEE
Confidence 3455677777766 45544443 2367889999999999998765544320 1122 3678999999999
Q ss_pred EeccC
Q 003093 479 APVRK 483 (848)
Q Consensus 479 ~~~~~ 483 (848)
++...
T Consensus 87 v~~~~ 91 (264)
T 4ecf_A 87 VNKKV 91 (264)
T ss_dssp ECTTS
T ss_pred EcCCC
Confidence 98765
No 393
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=26.68 E-value=64 Score=29.30 Aligned_cols=65 Identities=17% Similarity=0.149 Sum_probs=43.4
Q ss_pred EEEEEEEEcCCC--c---cchHHHHHHHHhcc-----CcEEEEeeecCCCCChHHHHHHHHHHhc-CCCeEEEEEccC
Q 003093 73 REVIAIYVDDDH--G---RNGIAALGDTLAAK-----RCRISFKAPLSVEATEDEITDLLVKVAL-TESRIIVVHTHY 139 (848)
Q Consensus 73 ~~vaii~~dd~~--g---~~~~~~l~~~l~~~-----g~~v~~~~~~~~~~~~~d~~~~l~~i~~-~~~~viv~~~~~ 139 (848)
-+|++|...|+- | ......+.+.+++. |.++.....++. +.+++...+++..+ .++|+|+..+..
T Consensus 6 ~rv~IistGde~~~G~~~d~n~~~l~~~l~~~~~~~~G~~v~~~~iv~D--d~~~i~~~l~~~~~~~~~DlVittGG~ 81 (167)
T 1uuy_A 6 YKVAILTVSDTVSAGAGPDRSGPRAVSVVDSSSEKLGGAKVVATAVVPD--EVERIKDILQKWSDVDEMDLILTLGGT 81 (167)
T ss_dssp EEEEEEEECHHHHTTSSCCSHHHHHHHHHHHTTTTTTSEEEEEEEEECS--CHHHHHHHHHHHHHTSCCSEEEEESCC
T ss_pred cEEEEEEECCcccCCCCccCcHHHHHHHHHhccccCCCcEEeEEEEcCC--CHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 467777754432 1 11234566677767 999888777764 34778888888764 579999988644
No 394
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=26.56 E-value=1.6e+02 Score=29.15 Aligned_cols=83 Identities=10% Similarity=-0.037 Sum_probs=54.0
Q ss_pred HHHcCcEEEEEEEEc--CCCcc-chHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccCCcHH
Q 003093 67 VDHYGWREVIAIYVD--DDHGR-NGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGP 143 (848)
Q Consensus 67 ~~~~~w~~vaii~~d--d~~g~-~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~ 143 (848)
++.-.-+.|+++..+ +.|.. .....+.+++++.|..+..... ..+...-...+..+.+.++|.||+.......
T Consensus 8 L~~~~s~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~- 83 (301)
T 3miz_A 8 IRSSRSNTFGIITDYVSTTPYSVDIVRGIQDWANANGKTILIANT---GGSSEREVEIWKMFQSHRIDGVLYVTMYRRI- 83 (301)
T ss_dssp ----CCCEEEEEESSTTTCCSCHHHHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEEEEEEEEE-
T ss_pred HhhCCCCEEEEEeCCCcCcccHHHHHHHHHHHHHHCCCEEEEEeC---CCChHHHHHHHHHHHhCCCCEEEEecCCccH-
Confidence 333345678988854 45666 8899999999999998875432 2233445667788888899999987654332
Q ss_pred HHHHHHHHcCC
Q 003093 144 VVFHVAQYLGM 154 (848)
Q Consensus 144 ~~~~~a~~~g~ 154 (848)
.+..+.+.|+
T Consensus 84 -~~~~~~~~~i 93 (301)
T 3miz_A 84 -VDPESGDVSI 93 (301)
T ss_dssp -CCCCCTTCCC
T ss_pred -HHHHHHhCCC
Confidence 3444444454
No 395
>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...
Probab=26.55 E-value=1.3e+02 Score=29.29 Aligned_cols=85 Identities=8% Similarity=0.012 Sum_probs=58.8
Q ss_pred HHHHHHHHcCcEEEEEEEEcCCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccC--
Q 003093 62 AIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY-- 139 (848)
Q Consensus 62 ai~~~~~~~~w~~vaii~~dd~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~-- 139 (848)
.++++.+ -|-.-+.++. |..|..+..+.+...-+...+.|-.+..+- +. -++.+.+..++|+|++.+..
T Consensus 68 ~iA~~~~-~GA~aiSVLT-d~~~F~Gs~~~L~~vr~~v~lPvLrKDFii-----d~--yQI~eAr~~GADaILLI~a~L~ 138 (258)
T 4a29_A 68 EYAKFME-RYAVGLSITT-EEKYFNGSYETLRKIASSVSIPILMSDFIV-----KE--SQIDDAYNLGADTVLLIVKILT 138 (258)
T ss_dssp HHHHHHT-TTCSEEEEEC-CSTTTCCCHHHHHHHHTTCSSCEEEESCCC-----SH--HHHHHHHHHTCSEEEEEGGGSC
T ss_pred HHHHHHh-CCCeEEEEeC-CCCCCCCCHHHHHHHHHhcCCCEeeccccc-----cH--HHHHHHHHcCCCeeehHHhhcC
Confidence 3445554 3767777775 556777778888776666677766554332 11 25677778899999988664
Q ss_pred -CcHHHHHHHHHHcCCC
Q 003093 140 -NRGPVVFHVAQYLGML 155 (848)
Q Consensus 140 -~~~~~~~~~a~~~g~~ 155 (848)
.+...+...|.++||.
T Consensus 139 ~~~l~~l~~~A~~lGl~ 155 (258)
T 4a29_A 139 ERELESLLEYARSYGME 155 (258)
T ss_dssp HHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHhHH
Confidence 4567899999999995
No 396
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=26.50 E-value=31 Score=33.99 Aligned_cols=76 Identities=7% Similarity=-0.107 Sum_probs=39.4
Q ss_pred EEEEEE--cCCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccCCcHHHHHHHHHHc
Q 003093 75 VIAIYV--DDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYL 152 (848)
Q Consensus 75 vaii~~--dd~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~~~~~a~~~ 152 (848)
|+++.. +++|.......+.+++++.|..+..... ..+...-...+..+...++|.|++....... ..++.+++.
T Consensus 2 Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-~~~~~~~~~ 77 (276)
T 2h0a_A 2 VSVLLPFVATEFYRRLVEGIEGVLLEQRYDLALFPI---LSLARLKRYLENTTLAYLTDGLILASYDLTE-RFEEGRLPT 77 (276)
T ss_dssp EEEEECCSCCHHHHHHHHHHHHHHGGGTCEEEECCC---CSCCCCC---------CCCSEEEEESCCCC-------CCSC
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEeC---CCchhhHHHHHHHHHhCCCCEEEEecCCCCH-HHHHHHhhc
Confidence 566664 3567778889999999999988765321 1111222345666777789999887654332 345555444
Q ss_pred CC
Q 003093 153 GM 154 (848)
Q Consensus 153 g~ 154 (848)
|.
T Consensus 78 ~i 79 (276)
T 2h0a_A 78 ER 79 (276)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 397
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=26.48 E-value=4.6e+02 Score=25.61 Aligned_cols=87 Identities=13% Similarity=0.079 Sum_probs=54.1
Q ss_pred EEEEEEEEcCCCccchHHHHHHH--------Hhcc-CcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccCCc--
Q 003093 73 REVIAIYVDDDHGRNGIAALGDT--------LAAK-RCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNR-- 141 (848)
Q Consensus 73 ~~vaii~~dd~~g~~~~~~l~~~--------l~~~-g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~-- 141 (848)
.+|.+-....|.-.-+...+... |+.+ |.+|.+--.- .. ...++..+++.++|+|.+.+....
T Consensus 121 ~~Vvlatv~gD~HdiG~~iv~~~k~~~~~~~L~~~~G~eVi~LG~~---vp---~e~iv~aa~e~~~d~VglS~l~t~~~ 194 (262)
T 1xrs_B 121 IVVVGASTGTDAHTVGIDAIMNMKGYAGHYGLERYEMIDAYNLGSQ---VA---NEDFIKKAVELEADVLLVSQTVTQKN 194 (262)
T ss_dssp EEEEEEEBTTCCCCHHHHHHHSTTCBTTBCCGGGCTTEEEEECCSS---BC---HHHHHHHHHHTTCSEEEEECCCCTTS
T ss_pred CEEEEEeCCCCCchHHHHHHhhhhcccchHHHHhcCCcEEEECCCC---CC---HHHHHHHHHHcCCCEEEEEeecCCcc
Confidence 34544444555444455556656 8899 9998864331 12 344566777789999999886554
Q ss_pred -----HHHHHHHHHHcCCCCCCeEEEecC
Q 003093 142 -----GPVVFHVAQYLGMLGTGYVWIATS 165 (848)
Q Consensus 142 -----~~~~~~~a~~~g~~~~~~~wi~~~ 165 (848)
...++.++++.|+...-.+|+++.
T Consensus 195 ~~~~~~~~~i~~L~~~g~~~~i~vivGG~ 223 (262)
T 1xrs_B 195 VHIQNMTHLIELLEAEGLRDRFVLLCGGP 223 (262)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGSEEEEECT
T ss_pred chHHHHHHHHHHHHhcCCCCCCEEEEECC
Confidence 445677888888743334555544
No 398
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=26.47 E-value=2.3e+02 Score=23.34 Aligned_cols=58 Identities=9% Similarity=0.023 Sum_probs=38.7
Q ss_pred chHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccC--CcHHHHHHHHHHcC
Q 003093 87 NGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY--NRGPVVFHVAQYLG 153 (848)
Q Consensus 87 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~--~~~~~~~~~a~~~g 153 (848)
.....+...+++.|..+... .+....+..+....+|+|++.... .++..++++.++.+
T Consensus 18 ~~~~~l~~~L~~~g~~v~~~---------~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~ 77 (130)
T 3eod_A 18 VFRSLLDSWFSSLGATTVLA---------ADGVDALELLGGFTPDLMICDIAMPRMNGLKLLEHIRNRG 77 (130)
T ss_dssp HHHHHHHHHHHHTTCEEEEE---------SCHHHHHHHHTTCCCSEEEECCC-----CHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCceEEEe---------CCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHhcC
Confidence 35667778888888776531 123455667777889999987653 45677888888765
No 399
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=26.42 E-value=2.6e+02 Score=22.64 Aligned_cols=57 Identities=12% Similarity=-0.006 Sum_probs=37.1
Q ss_pred chHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccC--CcHHHHHHHHHHc
Q 003093 87 NGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY--NRGPVVFHVAQYL 152 (848)
Q Consensus 87 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~--~~~~~~~~~a~~~ 152 (848)
.....+...++..|..+.. .. + ....+..++...+|++++.... .++..++++.++.
T Consensus 12 ~~~~~l~~~L~~~~~~v~~---~~---~---~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~ 70 (124)
T 1mb3_A 12 LNMKLFHDLLEAQGYETLQ---TR---E---GLSALSIARENKPDLILMDIQLPEISGLEVTKWLKED 70 (124)
T ss_dssp HHHHHHHHHHHHTTCEEEE---ES---C---HHHHHHHHHHHCCSEEEEESBCSSSBHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCcEEEE---eC---C---HHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHcC
Confidence 4566777788888877642 11 1 2234445555679999998654 4677788888875
No 400
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=26.36 E-value=1.2e+02 Score=29.94 Aligned_cols=64 Identities=13% Similarity=0.152 Sum_probs=45.8
Q ss_pred EEEEEEEEc-CCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccC
Q 003093 73 REVIAIYVD-DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY 139 (848)
Q Consensus 73 ~~vaii~~d-d~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~ 139 (848)
.+|+++..+ ++|.......+.+++++.|..+..... ..+...-...++.+...++|.|++....
T Consensus 9 ~~Igvi~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 73 (288)
T 2qu7_A 9 NIIAFIVPDQNPFFTEVLTEISHECQKHHLHVAVASS---EENEDKQQDLIETFVSQNVSAIILVPVK 73 (288)
T ss_dssp EEEEEEESSCCHHHHHHHHHHHHHHGGGTCEEEEEEC---TTCHHHHHHHHHHHHHTTEEEEEECCSS
T ss_pred CEEEEEECCCCchHHHHHHHHHHHHHHCCCEEEEEeC---CCCHHHHHHHHHHHHHcCccEEEEecCC
Confidence 568888764 556777888999999999998765421 2233444566777777899999887543
No 401
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=26.35 E-value=1.8e+02 Score=24.30 Aligned_cols=58 Identities=10% Similarity=-0.109 Sum_probs=37.8
Q ss_pred chHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccC---CcHHHHHHHHHHc
Q 003093 87 NGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY---NRGPVVFHVAQYL 152 (848)
Q Consensus 87 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~---~~~~~~~~~a~~~ 152 (848)
.....+...+++.|..+... .. +....+..+....+|+|++.... .++..++++.++.
T Consensus 20 ~~~~~l~~~L~~~g~~v~~~--~~------~~~~a~~~~~~~~~dlii~d~~~~~~~~g~~~~~~l~~~ 80 (140)
T 3cg0_A 20 LAAATLRIQLESLGYDVLGV--FD------NGEEAVRCAPDLRPDIALVDIMLCGALDGVETAARLAAG 80 (140)
T ss_dssp HHHHHHHHHHHHHTCEEEEE--ES------SHHHHHHHHHHHCCSEEEEESSCCSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCeeEEE--EC------CHHHHHHHHHhCCCCEEEEecCCCCCCCHHHHHHHHHhC
Confidence 45667777788788876532 11 12334455555679999998653 3677788888876
No 402
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=26.19 E-value=2.7e+02 Score=26.60 Aligned_cols=109 Identities=12% Similarity=0.134 Sum_probs=67.5
Q ss_pred cEEecccCCCCCCCCCCCceEeccCChHHHHHHHHHHHHHcCcEEEEEEEEcCCCccchHHHHHHHHhccCcEEEEeeec
Q 003093 30 PLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPL 109 (848)
Q Consensus 30 P~Is~~at~p~ls~~~~p~f~r~~p~d~~q~~ai~~~~~~~~w~~vaii~~dd~~g~~~~~~l~~~l~~~g~~v~~~~~~ 109 (848)
.+||=++|...+.+.-.-=+.-+..+..+..+++...-+ ++ ++++++.-.+.. ...+.+.+.+ |.++... .+
T Consensus 66 VIISRGgta~~Lr~~~~iPVV~I~vs~~Dil~aL~~a~~-~~-~kIavVg~~~~~--~~~~~i~~ll---~~~i~~~-~~ 137 (225)
T 2pju_A 66 AIIAAGSNGAYLKSRLSVPVILIKPSGYDVLQFLAKAGK-LT-SSIGVVTYQETI--PALVAFQKTF---NLRLDQR-SY 137 (225)
T ss_dssp EEEEEHHHHHHHHTTCSSCEEEECCCHHHHHHHHHHTTC-TT-SCEEEEEESSCC--HHHHHHHHHH---TCCEEEE-EE
T ss_pred EEEeCChHHHHHHhhCCCCEEEecCCHHHHHHHHHHHHh-hC-CcEEEEeCchhh--hHHHHHHHHh---CCceEEE-Ee
Confidence 466666665555432112245566677777777776644 44 588888754432 2334444444 4444432 22
Q ss_pred CCCCChHHHHHHHHHHhcCCCeEEEEEccCCcHHHHHHHHHHcCCC
Q 003093 110 SVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGML 155 (848)
Q Consensus 110 ~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~~~~~a~~~g~~ 155 (848)
. +.++....+.++++.+.++||-.+ ...+.|+++||.
T Consensus 138 ~---~~ee~~~~i~~l~~~G~~vVVG~~------~~~~~A~~~Gl~ 174 (225)
T 2pju_A 138 I---TEEDARGQINELKANGTEAVVGAG------LITDLAEEAGMT 174 (225)
T ss_dssp S---SHHHHHHHHHHHHHTTCCEEEESH------HHHHHHHHTTSE
T ss_pred C---CHHHHHHHHHHHHHCCCCEEECCH------HHHHHHHHcCCc
Confidence 2 458999999999999999987533 357788999984
No 403
>3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406}
Probab=26.06 E-value=4e+02 Score=27.00 Aligned_cols=34 Identities=12% Similarity=0.074 Sum_probs=21.2
Q ss_pred CCCeEEEEccCCchhHHHHHHhhccCCccEEecc
Q 003093 2 EGQTVAIIGPQDAVTSHVVSHVANELQVPLLSFS 35 (848)
Q Consensus 2 ~~~V~aiIGp~~S~~~~ava~i~~~~~vP~Is~~ 35 (848)
+||-+..=-+.+...-..++....+.+++.|..+
T Consensus 15 RDG~Q~~~~~~~~~~Kl~ia~~L~~~Gv~~IE~g 48 (325)
T 3eeg_A 15 RDGEQVPGCQLNTEEKIIVAKALDELGVDVIEAG 48 (325)
T ss_dssp GCC-------CCTTHHHHHHHHHHHHTCSEEEEE
T ss_pred CCcccCCCCCCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 3444444335667788888899999999999754
No 404
>2jfn_A Glutamate racemase; cell WALL, isomerase, cell shape, UDP- murnac-Ala, peptidoglycan biosynthesis, peptidoglycan synthesis; HET: GLU UMA; 1.9A {Escherichia coli}
Probab=25.12 E-value=1e+02 Score=30.78 Aligned_cols=31 Identities=3% Similarity=0.137 Sum_probs=23.6
Q ss_pred CCeEEEEccCCchhHHHHHHhhccCCccEEe
Q 003093 3 GQTVAIIGPQDAVTSHVVSHVANELQVPLLS 33 (848)
Q Consensus 3 ~~V~aiIGp~~S~~~~ava~i~~~~~vP~Is 33 (848)
.++.+|+=+..+..+.++..+-+..++|+|.
T Consensus 83 ~g~d~IviaCNTas~~~l~~lr~~~~iPVig 113 (285)
T 2jfn_A 83 YPLALAVVACNTASTVSLPALREKFDFPVVG 113 (285)
T ss_dssp SCCSEEEECCHHHHHHHHHHHHHHCSSCEEC
T ss_pred CCCCEEEEECccccHHHHHHHHHhCCCCEEe
Confidence 4678888766666556777888888999986
No 405
>3kn3_A Putative periplasmic protein; alpha-beta structure, periplasmic binding protein fold, STRU genomics, PSI-2, protein structure initiative; HET: GSH CIT; 2.41A {Wolinella succinogenes}
Probab=25.10 E-value=38 Score=33.05 Aligned_cols=74 Identities=8% Similarity=-0.009 Sum_probs=51.0
Q ss_pred eeeeHHHHHHHHHhCCCCcceEEeeCCCCCCCCChhHHHHHHhcCeeeEEeeceeeecCce---eeeeecccccccceEE
Q 003093 401 SGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDIAIITNRT---KMADFTQPYIESGLVV 477 (848)
Q Consensus 401 ~G~~~dll~~i~~~l~~~~~~~~~~~~~~~~n~s~~~~i~~l~~g~~D~~~~~~~~t~~R~---~~~dfs~p~~~~~~~~ 477 (848)
.|+.-+|...+.+..|.++.+.+. .-..++.++.+|.+|+.+..-....+.. ....-..++....+++
T Consensus 18 s~ll~eL~~~Fek~~gv~V~~~~~---------gSg~ll~qi~~G~aDVfisa~~~~~~~l~~~G~~~~~~~~a~N~LVL 88 (242)
T 3kn3_A 18 TGLLDVLAPAYKKDTGVDLKWVAV---------GTGNALKLGENCDVDVVFVHAPKVELEYVEKGFGIDRTPVMYNDFVI 88 (242)
T ss_dssp HTHHHHHHHHHHHHHSCEEEEEEE---------CHHHHHHHHHTTCCSEEEECCHHHHHHHHHHTSEEEEEEEECSCEEE
T ss_pred chHHHHHHHHHHHHhCCeEEEEEc---------CcHHHHHHHhcCCCCEEEecChHhHHHHHhcCCCccceEEEcceEEE
Confidence 356667888888888877666553 3668899999999999977443322221 0111236888899999
Q ss_pred EEeccC
Q 003093 478 VAPVRK 483 (848)
Q Consensus 478 v~~~~~ 483 (848)
++|+.+
T Consensus 89 V~P~~~ 94 (242)
T 3kn3_A 89 IGNPSF 94 (242)
T ss_dssp EECTHH
T ss_pred EEeCCC
Confidence 999865
No 406
>3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol dehydrogenase, structur genomics, joint center for structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=25.06 E-value=38 Score=35.45 Aligned_cols=95 Identities=12% Similarity=0.053 Sum_probs=56.8
Q ss_pred HHHHHHHHHcCcEEEEEEEEcCCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccC-
Q 003093 61 AAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY- 139 (848)
Q Consensus 61 ~ai~~~~~~~~w~~vaii~~dd~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~- 139 (848)
+.+.++++.+|.+++.+|+....++ ..+.+.+.|+ ..+++. .+.+..+.+.+...+..+++.++|+||-.+.+
T Consensus 26 ~~l~~~l~~~g~~rvliVtd~~~~~--~~~~v~~~L~---~~~~f~-~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 99 (364)
T 3iv7_A 26 AFLKQEVERRGSAKVMVIAGEREMS--IAHKVASEIE---VAIWHD-EVVMHVPIEVAERARAVATDNEIDLLVCVGGGS 99 (364)
T ss_dssp HHHHHHHHHHTCSSEEEECCGGGHH--HHHHHTTTSC---CSEEEC-CCCTTCBHHHHHHHHHHHHHTTCCEEEEEESHH
T ss_pred HHHHHHHHHcCCCEEEEEECCCHHH--HHHHHHHHcC---CCEEEc-ceecCCCHHHHHHHHHHHHhcCCCEEEEeCCcH
Confidence 4567788899999998887554322 2344444443 123333 33334456778888888899999999887654
Q ss_pred -CcHHHHHHHHHHcCCCCCCeEEEecCc
Q 003093 140 -NRGPVVFHVAQYLGMLGTGYVWIATSW 166 (848)
Q Consensus 140 -~~~~~~~~~a~~~g~~~~~~~wi~~~~ 166 (848)
-+..+++.. ..++ .++-|-|..
T Consensus 100 ~iD~aK~iA~--~~~~---P~i~IPTTa 122 (364)
T 3iv7_A 100 TIGLAKAIAM--TTAL---PIVAIPTTY 122 (364)
T ss_dssp HHHHHHHHHH--HHCC---CEEEEECSS
T ss_pred HHHHHHHHHh--ccCC---CEEEEcCCc
Confidence 344444433 2333 455555544
No 407
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=24.97 E-value=2e+02 Score=23.67 Aligned_cols=58 Identities=14% Similarity=0.067 Sum_probs=39.4
Q ss_pred chHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcC-CCeEEEEEccC---CcHHHHHHHHHHcC
Q 003093 87 NGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALT-ESRIIVVHTHY---NRGPVVFHVAQYLG 153 (848)
Q Consensus 87 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~-~~~viv~~~~~---~~~~~~~~~a~~~g 153 (848)
.....+...++..|..+.. .. +....+..+... .+|+|++.... ..+..++++.++..
T Consensus 16 ~~~~~l~~~L~~~g~~v~~---~~------~~~~a~~~l~~~~~~dlvi~d~~l~~~~~g~~~~~~l~~~~ 77 (132)
T 2rdm_A 16 ILLLDFESTLTDAGFLVTA---VS------SGAKAIEMLKSGAAIDGVVTDIRFCQPPDGWQVARVAREID 77 (132)
T ss_dssp HHHHHHHHHHHHTTCEEEE---ES------SHHHHHHHHHTTCCCCEEEEESCCSSSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCEEEE---EC------CHHHHHHHHHcCCCCCEEEEeeeCCCCCCHHHHHHHHHhcC
Confidence 4566777888888887653 21 223455566665 79999998653 45777888888764
No 408
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=24.68 E-value=1.8e+02 Score=24.44 Aligned_cols=57 Identities=5% Similarity=0.057 Sum_probs=39.4
Q ss_pred chHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccCC--cHHHHHHHHHHcC
Q 003093 87 NGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYN--RGPVVFHVAQYLG 153 (848)
Q Consensus 87 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~--~~~~~~~~a~~~g 153 (848)
.....+...+++.|.+|... .+....+..+....+|+|++.. .+ .+..++++.++..
T Consensus 15 ~~~~~l~~~L~~~g~~v~~~---------~~~~~a~~~l~~~~~dlvi~d~-~~~~~g~~~~~~l~~~~ 73 (142)
T 2qxy_A 15 ITFLAVKNALEKDGFNVIWA---------KNEQEAFTFLRREKIDLVFVDV-FEGEESLNLIRRIREEF 73 (142)
T ss_dssp HHHHHHHHHHGGGTCEEEEE---------SSHHHHHHHHTTSCCSEEEEEC-TTTHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCEEEEE---------CCHHHHHHHHhccCCCEEEEeC-CCCCcHHHHHHHHHHHC
Confidence 45677888888888876521 1234566677778899999987 43 4556788877754
No 409
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=24.49 E-value=2e+02 Score=25.56 Aligned_cols=82 Identities=17% Similarity=0.144 Sum_probs=43.8
Q ss_pred EEEEEEEcCCCc--cchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccC--CcH--HHHHH
Q 003093 74 EVIAIYVDDDHG--RNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY--NRG--PVVFH 147 (848)
Q Consensus 74 ~vaii~~dd~~g--~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~--~~~--~~~~~ 147 (848)
++.|+|. +.+| +..++.+.+.+++.|+++.... +. ..+....+.++. +.|.|++.+.. ... ..++.
T Consensus 2 kv~IvY~-S~tGnT~~~A~~ia~~l~~~g~~v~~~~-~~----~~~~~~~~~~~~--~~d~ii~Gspty~g~~p~~~fl~ 73 (161)
T 3hly_A 2 SVLIGYL-SDYGYSDRLSQAIGRGLVKTGVAVEMVD-LR----AVDPQELIEAVS--SARGIVLGTPPSQPSEAVATALS 73 (161)
T ss_dssp CEEEEEC-TTSTTHHHHHHHHHHHHHHTTCCEEEEE-TT----TCCHHHHHHHHH--HCSEEEEECCBSSCCHHHHHHHH
T ss_pred EEEEEEE-CCChHHHHHHHHHHHHHHhCCCeEEEEE-CC----CCCHHHHHHHHH--hCCEEEEEcCCcCCchhHHHHHH
Confidence 4677873 3344 4556788888888887754322 21 123444455554 35677766543 222 25666
Q ss_pred HHHHcCCCCCCeEEEe
Q 003093 148 VAQYLGMLGTGYVWIA 163 (848)
Q Consensus 148 ~a~~~g~~~~~~~wi~ 163 (848)
......+.+.....++
T Consensus 74 ~l~~~~l~gk~v~~fg 89 (161)
T 3hly_A 74 TIFAAAHNKQAIGLFD 89 (161)
T ss_dssp HHHHHCCTTSEEEEEC
T ss_pred HHHhhhhCCCEEEEEE
Confidence 6655445443333333
No 410
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=24.46 E-value=2.8e+02 Score=23.15 Aligned_cols=58 Identities=12% Similarity=0.117 Sum_probs=38.1
Q ss_pred chHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccC--CcHHHHHHHHHHcC
Q 003093 87 NGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY--NRGPVVFHVAQYLG 153 (848)
Q Consensus 87 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~--~~~~~~~~~a~~~g 153 (848)
.....+...+++.|..|.. .. +....+..+....+|+|++.... .++..++++.++..
T Consensus 15 ~~~~~l~~~L~~~g~~v~~---~~------~~~~al~~~~~~~~dlvllD~~l~~~~g~~l~~~l~~~~ 74 (136)
T 2qzj_A 15 DNCQKLKGFLEEKGISIDL---AY------NCEEAIGKIFSNKYDLIFLEIILSDGDGWTLCKKIRNVT 74 (136)
T ss_dssp HHHHHHHHHHHTTTCEEEE---ES------SHHHHHHHHHHCCCSEEEEESEETTEEHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHCCCEEEE---EC------CHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHccCC
Confidence 4566777888888876542 21 22334555666789999987653 46777888887654
No 411
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=24.35 E-value=3e+02 Score=23.01 Aligned_cols=58 Identities=9% Similarity=0.049 Sum_probs=38.1
Q ss_pred chHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccC--CcHHHHHHHHHHcC
Q 003093 87 NGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY--NRGPVVFHVAQYLG 153 (848)
Q Consensus 87 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~--~~~~~~~~~a~~~g 153 (848)
.....+...++..|..|.. .. +....+..+....+|+|++.... .++..++++.++..
T Consensus 15 ~~~~~l~~~L~~~g~~v~~---~~------~~~~a~~~l~~~~~dlvllD~~l~~~~g~~l~~~l~~~~ 74 (137)
T 3cfy_A 15 SLAILYKQYVKDEPYDIFH---VE------TGRDAIQFIERSKPQLIILDLKLPDMSGEDVLDWINQND 74 (137)
T ss_dssp THHHHHHHHTTTSSSEEEE---ES------SHHHHHHHHHHHCCSEEEECSBCSSSBHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCceEEE---eC------CHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcC
Confidence 3566777788888877542 11 12334455555679999998653 46778888888754
No 412
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=24.25 E-value=1.6e+02 Score=21.00 Aligned_cols=19 Identities=32% Similarity=0.452 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHhhcc
Q 003093 750 CLLALFIYLMQIVHQFSRH 768 (848)
Q Consensus 750 ~~la~~vf~~e~~~~~~~~ 768 (848)
++++++++++..+-..+|+
T Consensus 24 llL~li~~~LwK~GFFkR~ 42 (54)
T 2knc_A 24 LLLTILVLAMWKVGFFKRN 42 (54)
T ss_dssp HHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHcCcccCC
Confidence 3444455555444333333
No 413
>2b4l_A Glycine betaine-binding protein; substrate-binding protein, closed liganded, ABC-transporter, compatible solutes, transport protein; 2.00A {Bacillus subtilis} PDB: 2b4m_A* 3chg_D
Probab=24.14 E-value=94 Score=30.77 Aligned_cols=58 Identities=16% Similarity=0.239 Sum_probs=37.3
Q ss_pred CCceEEEEecCCCCccceEEeCCCcceeeeeHHHHHHHHHhCCCCcceEEeeCCCCCCCCChhHHHHHHhcCeeeEEeec
Q 003093 374 NGRHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGD 453 (848)
Q Consensus 374 ~g~~lrv~v~~~~~~~p~~~~~~~~~~~G~~~dll~~i~~~l~~~~~~~~~~~~~~~~n~s~~~~i~~l~~g~~D~~~~~ 453 (848)
.+++++||.. +|..- -+...++..+.+.+|+++++... ++ .-+...|.+|++|+.+..
T Consensus 163 ~~~~I~ig~~---~w~e~----------~~~~~v~~~~Le~~Gy~Ve~~~~--------~~-~~~~~al~~G~iD~~~e~ 220 (268)
T 2b4l_A 163 KGDKINLAYV---AWDSE----------IASTNVIGKVLEDLGYEVTLTQV--------EA-GPMWTAIATGSADASLSA 220 (268)
T ss_dssp SSCEEEEEEC---CCHHH----------HHHHHHHHHHHHHHTCEEEEEEC--------CT-THHHHHHHHTSSSEEEEE
T ss_pred cCcceEEEcc---CccHH----------HHHHHHHHHHHHHcCCceEEEEC--------Ch-HHHHHHHHCCCCeEEehh
Confidence 4567888876 23210 12334566666778999776653 22 566788999999998653
No 414
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=24.06 E-value=2.7e+02 Score=22.14 Aligned_cols=58 Identities=14% Similarity=0.039 Sum_probs=38.5
Q ss_pred chHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccC--CcHHHHHHHHHHcC
Q 003093 87 NGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY--NRGPVVFHVAQYLG 153 (848)
Q Consensus 87 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~--~~~~~~~~~a~~~g 153 (848)
.....+...+++.|..+.. .. +....+..+....+|++++.... .++..++++.++..
T Consensus 12 ~~~~~l~~~l~~~~~~v~~---~~------~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~ 71 (116)
T 3a10_A 12 NIRELLKEELQEEGYEIDT---AE------NGEEALKKFFSGNYDLVILDIEMPGISGLEVAGEIRKKK 71 (116)
T ss_dssp HHHHHHHHHHHHTTCEEEE---ES------SHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCEEEE---eC------CHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHccC
Confidence 4556777778888877542 11 12334555666789999988654 46777888888764
No 415
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=23.45 E-value=1e+02 Score=30.65 Aligned_cols=65 Identities=9% Similarity=0.135 Sum_probs=45.1
Q ss_pred EEEEEEE-EcCCCccchHHHHHHHHhccCc---EEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEcc
Q 003093 73 REVIAIY-VDDDHGRNGIAALGDTLAAKRC---RISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTH 138 (848)
Q Consensus 73 ~~vaii~-~dd~~g~~~~~~l~~~l~~~g~---~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~ 138 (848)
++|+++- .+++|.....+.+.+.+++.|. .+.... .....+.......++++.+.++|.|++.+.
T Consensus 3 ~~Igvi~~~~~p~~~~i~~gi~~~l~~~gy~g~~v~l~~-~~~~~~~~~~~~~~~~l~~~~vDgII~~~~ 71 (295)
T 3lft_A 3 AKIGVLQFVSHPSLDLIYKGIQDGLAEEGYKDDQVKIDF-MNSEGDQSKVATMSKQLVANGNDLVVGIAT 71 (295)
T ss_dssp EEEEEEECSCCHHHHHHHHHHHHHHHHTTCCGGGEEEEE-EECTTCHHHHHHHHHHHTTSSCSEEEEESH
T ss_pred eEEEEEEccCChhHHHHHHHHHHHHHHcCCCCCceEEEE-ecCCCCHHHHHHHHHHHHhcCCCEEEECCc
Confidence 4677772 3356777888999999999998 643321 122223455667788898899999998753
No 416
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=23.32 E-value=2.9e+02 Score=22.46 Aligned_cols=58 Identities=10% Similarity=0.041 Sum_probs=38.5
Q ss_pred chHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccC--CcHHHHHHHHHHcC
Q 003093 87 NGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY--NRGPVVFHVAQYLG 153 (848)
Q Consensus 87 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~--~~~~~~~~~a~~~g 153 (848)
.....+...++..|..+.. .. +....+..+....+|++++.... .++..++++.++.+
T Consensus 14 ~~~~~l~~~l~~~~~~v~~---~~------~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~ 73 (126)
T 1dbw_A 14 PVRKSLAFMLTMNGFAVKM---HQ------SAEAFLAFAPDVRNGVLVTDLRMPDMSGVELLRNLGDLK 73 (126)
T ss_dssp HHHHHHHHHHHHTTCEEEE---ES------CHHHHHHHGGGCCSEEEEEECCSTTSCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCcEEEE---eC------CHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHhcC
Confidence 3456677777777876542 11 12345566777789999988653 46777888888754
No 417
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=22.27 E-value=1.5e+02 Score=28.37 Aligned_cols=63 Identities=8% Similarity=0.020 Sum_probs=44.7
Q ss_pred EEEEEEEE--cCCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEcc
Q 003093 73 REVIAIYV--DDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTH 138 (848)
Q Consensus 73 ~~vaii~~--dd~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~ 138 (848)
+.|+++.. +++|.......+.+++++.|..+..... ..+...-...+..+...++|.|++...
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiI~~~~ 67 (255)
T 1byk_A 3 KVVAIIVTRLDSLSENLAVQTMLPAFYEQGYDPIMMES---QFSPQLVAEHLGVLKRRNIDGVVLFGF 67 (255)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHHHTCEEEEEEC---TTCHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred CEEEEEeCCCCCccHHHHHHHHHHHHHHcCCEEEEEeC---CCcHHHHHHHHHHHHhcCCCEEEEecC
Confidence 46788874 3557777888999999999998765422 123344456777888888999888764
No 418
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=22.14 E-value=2.5e+02 Score=24.32 Aligned_cols=59 Identities=8% Similarity=0.048 Sum_probs=37.8
Q ss_pred chHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcC--CCeEEEEEcc--CCcHHHHHHHHHHcC
Q 003093 87 NGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALT--ESRIIVVHTH--YNRGPVVFHVAQYLG 153 (848)
Q Consensus 87 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~--~~~viv~~~~--~~~~~~~~~~a~~~g 153 (848)
.....+...|++.|..+... .. +....+..+++. .+|+|++... ..++..+++++++..
T Consensus 47 ~~~~~l~~~L~~~g~~v~~~--~~------~~~~al~~l~~~~~~~dliilD~~l~~~~g~~~~~~lr~~~ 109 (157)
T 3hzh_A 47 FTVKQLTQIFTSEGFNIIDT--AA------DGEEAVIKYKNHYPNIDIVTLXITMPKMDGITCLSNIMEFD 109 (157)
T ss_dssp HHHHHHHHHHHHTTCEEEEE--ES------SHHHHHHHHHHHGGGCCEEEECSSCSSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCeEEEE--EC------CHHHHHHHHHhcCCCCCEEEEeccCCCccHHHHHHHHHhhC
Confidence 45667778888888776422 11 223344455555 6799998754 456777888888765
No 419
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=22.06 E-value=26 Score=34.49 Aligned_cols=86 Identities=13% Similarity=0.144 Sum_probs=48.2
Q ss_pred HHHHHHHHHH-----HcCcEEEEEEEEcCCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEE
Q 003093 59 QMAAIAEIVD-----HYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRII 133 (848)
Q Consensus 59 q~~ai~~~~~-----~~~w~~vaii~~dd~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~vi 133 (848)
.++.+++.+. ...-++|.++..+ ...+.+.+.|++.|..|.....|.......+.......+...+.|+|
T Consensus 115 ~~e~L~~~l~~~~~~~~~~~~vL~~rg~-----~~r~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~~~d~v 189 (254)
T 4es6_A 115 DSEALLALPAFQDSLRVHDPKVLIMRGE-----GGREFLAERLRGQGVQVDYLPLYRRRAPDYPAGELLARVRAERLNGL 189 (254)
T ss_dssp SHHHHHTCHHHHHHTCSSSCEEEEEECS-----SCCCHHHHHHHHTTCEEEEEECEEEECCCCCTTHHHHHHHHTTCCEE
T ss_pred CHHHHHHhHhhcccccCCCCEEEEEcCC-----ccHHHHHHHHHHCCCEEEEEeEEEeeCCCCCHHHHHHHHHhCCCCEE
Confidence 3567777664 2344677666533 33456788888999887655444322111111222334445667775
Q ss_pred EEEccCCcHHHHHHHHH
Q 003093 134 VVHTHYNRGPVVFHVAQ 150 (848)
Q Consensus 134 v~~~~~~~~~~~~~~a~ 150 (848)
+ +.++..+..++..+.
T Consensus 190 ~-ftS~s~v~~~~~~~~ 205 (254)
T 4es6_A 190 V-VSSGQGLQNLYQLAA 205 (254)
T ss_dssp E-CCSHHHHHHHHHHHG
T ss_pred E-EcCHHHHHHHHHHhh
Confidence 5 566666777776654
No 420
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=22.05 E-value=2.2e+02 Score=23.70 Aligned_cols=58 Identities=10% Similarity=0.077 Sum_probs=38.0
Q ss_pred chHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccC--CcHHHHHHHHHHcC
Q 003093 87 NGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY--NRGPVVFHVAQYLG 153 (848)
Q Consensus 87 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~--~~~~~~~~~a~~~g 153 (848)
.....+...++..|..+.. .. +....+..+....+|+|++.... .++..++++.++..
T Consensus 14 ~~~~~l~~~L~~~g~~v~~---~~------~~~~al~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~ 73 (132)
T 3crn_A 14 AILDSTKQILEFEGYEVEI---AA------TAGEGLAKIENEFFNLALFXIKLPDMEGTELLEKAHKLR 73 (132)
T ss_dssp HHHHHHHHHHHHTTCEEEE---ES------SHHHHHHHHHHSCCSEEEECSBCSSSBHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCceEEE---eC------CHHHHHHHHhcCCCCEEEEecCCCCCchHHHHHHHHhhC
Confidence 3556677778778876542 11 12344556666789999987653 46777888887754
No 421
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=22.04 E-value=1.8e+02 Score=28.33 Aligned_cols=71 Identities=7% Similarity=-0.137 Sum_probs=45.5
Q ss_pred EEEEEEEEc--CCCccchHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccCCcHHHHHHHHH
Q 003093 73 REVIAIYVD--DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQ 150 (848)
Q Consensus 73 ~~vaii~~d--d~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~~~~~a~ 150 (848)
+.|+++..+ ++|.......+.+++++.|..+.....-.......+ + ++|.|++....... ..++.+.
T Consensus 9 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~-------~---~vdgiI~~~~~~~~-~~~~~l~ 77 (277)
T 3cs3_A 9 NIIGVYLADYGGSFYGELLEGIKKGLALFDYEMIVCSGKKSHLFIPE-------K---MVDGAIILDWTFPT-KEIEKFA 77 (277)
T ss_dssp CEEEEEECSSCTTTHHHHHHHHHHHHHTTTCEEEEEESTTTTTCCCT-------T---TCSEEEEECTTSCH-HHHHHHH
T ss_pred cEEEEEecCCCChhHHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHhh-------c---cccEEEEecCCCCH-HHHHHHH
Confidence 468888753 678888899999999999998765432111000011 1 78888887654333 4566677
Q ss_pred HcCC
Q 003093 151 YLGM 154 (848)
Q Consensus 151 ~~g~ 154 (848)
+.|.
T Consensus 78 ~~~i 81 (277)
T 3cs3_A 78 ERGH 81 (277)
T ss_dssp HTTC
T ss_pred hcCC
Confidence 6665
No 422
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=21.98 E-value=3.3e+02 Score=22.38 Aligned_cols=58 Identities=10% Similarity=0.132 Sum_probs=39.6
Q ss_pred chHHHHHHHHhccCc--EEEEeeecCCCCChHHHHHHHHHHhc-------CCCeEEEEEccC--CcHHHHHHHHHHcC
Q 003093 87 NGIAALGDTLAAKRC--RISFKAPLSVEATEDEITDLLVKVAL-------TESRIIVVHTHY--NRGPVVFHVAQYLG 153 (848)
Q Consensus 87 ~~~~~l~~~l~~~g~--~v~~~~~~~~~~~~~d~~~~l~~i~~-------~~~~viv~~~~~--~~~~~~~~~a~~~g 153 (848)
.....+...+++.|. .+... .+....+..+.. ..+|+|++.... ..+..++++.++..
T Consensus 13 ~~~~~l~~~L~~~~~~~~v~~~---------~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~ 81 (140)
T 1k68_A 13 ADIRLIQEALANSTVPHEVVTV---------RDGMEAMAYLRQEGEYANASRPDLILLXLNLPKKDGREVLAEIKSDP 81 (140)
T ss_dssp HHHHHHHHHHHTCSSCCEEEEE---------CSHHHHHHHHTTCGGGGSCCCCSEEEECSSCSSSCHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhcCCCceEEEE---------CCHHHHHHHHHcccccccCCCCcEEEEecCCCcccHHHHHHHHHcCc
Confidence 456778888888887 44321 123445666665 679999998654 46778888888854
No 423
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=21.85 E-value=3.5e+02 Score=22.59 Aligned_cols=58 Identities=10% Similarity=0.020 Sum_probs=36.9
Q ss_pred chHHHHHHHHhccCc--EEEEeeecCCCCChHHHHHHHHHHhc----------CCCeEEEEEccC--CcHHHHHHHHHHc
Q 003093 87 NGIAALGDTLAAKRC--RISFKAPLSVEATEDEITDLLVKVAL----------TESRIIVVHTHY--NRGPVVFHVAQYL 152 (848)
Q Consensus 87 ~~~~~l~~~l~~~g~--~v~~~~~~~~~~~~~d~~~~l~~i~~----------~~~~viv~~~~~--~~~~~~~~~a~~~ 152 (848)
.....+...+++.|. .+... .+....+..+.. ..+|+|++.... .++..++++.++.
T Consensus 17 ~~~~~l~~~L~~~g~~~~v~~~---------~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~ 87 (149)
T 1k66_A 17 EDFSTFQRLLQREGVVNPIYRC---------ITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNLPGTDGREVLQEIKQD 87 (149)
T ss_dssp HHHHHHHHHHHHTTBCSCEEEE---------CSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCCSSSCHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHcCCCceEEEE---------CCHHHHHHHHHhcccccCcccCCCCcEEEEECCCCCCCHHHHHHHHHhC
Confidence 456677888888886 44321 123344555654 679999988654 3666788888765
Q ss_pred C
Q 003093 153 G 153 (848)
Q Consensus 153 g 153 (848)
.
T Consensus 88 ~ 88 (149)
T 1k66_A 88 E 88 (149)
T ss_dssp T
T ss_pred c
Confidence 3
No 424
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=21.85 E-value=5e+02 Score=25.15 Aligned_cols=84 Identities=12% Similarity=0.007 Sum_probs=56.2
Q ss_pred EEEEEEEEcCCCccchHHHHHHHHhccCcEEEEeee-cCCCCChHHHHHHHHHHhcCCCeEEEEEccC----CcHHHHHH
Q 003093 73 REVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAP-LSVEATEDEITDLLVKVALTESRIIVVHTHY----NRGPVVFH 147 (848)
Q Consensus 73 ~~vaii~~dd~~g~~~~~~l~~~l~~~g~~v~~~~~-~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~----~~~~~~~~ 147 (848)
.+|.+....++.-.-+..-+...|+.+|.+|.+--. .|. .++ +..++..++|+|.+.+.. .....+++
T Consensus 124 ~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~vp~----e~l---~~~~~~~~~d~V~lS~l~~~~~~~~~~~i~ 196 (258)
T 2i2x_B 124 GTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRDVPA----EEV---LAAVQKEKPIMLTGTALMTTTMYAFKEVND 196 (258)
T ss_dssp CEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEECCS----HHH---HHHHHHHCCSEEEEECCCTTTTTHHHHHHH
T ss_pred CeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCH----HHH---HHHHHHcCCCEEEEEeeccCCHHHHHHHHH
Confidence 466666666666666777888889999999876543 221 344 445555689999998743 45666888
Q ss_pred HHHHcCCCCCCeEEEecC
Q 003093 148 VAQYLGMLGTGYVWIATS 165 (848)
Q Consensus 148 ~a~~~g~~~~~~~wi~~~ 165 (848)
++++.|.. -.+++++.
T Consensus 197 ~l~~~~~~--~~v~vGG~ 212 (258)
T 2i2x_B 197 MLLENGIK--IPFACGGG 212 (258)
T ss_dssp HHHTTTCC--CCEEEEST
T ss_pred HHHhcCCC--CcEEEECc
Confidence 88887763 33555543
No 425
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=21.75 E-value=1.8e+02 Score=19.72 Aligned_cols=21 Identities=14% Similarity=0.129 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHhhcc
Q 003093 748 LACLLALFIYLMQIVHQFSRH 768 (848)
Q Consensus 748 ~g~~la~~vf~~e~~~~~~~~ 768 (848)
+|+++.+++.+.-.+|.+||+
T Consensus 19 VGvll~vi~~l~~~~~~RRR~ 39 (44)
T 2jwa_A 19 VGILLVVVLGVVFGILIKRRQ 39 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhheehhh
Confidence 333333333334344444443
No 426
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=21.37 E-value=2.6e+02 Score=23.27 Aligned_cols=58 Identities=9% Similarity=-0.003 Sum_probs=38.5
Q ss_pred chHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEcc--CCcHHHHHHHHHHcC
Q 003093 87 NGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTH--YNRGPVVFHVAQYLG 153 (848)
Q Consensus 87 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~--~~~~~~~~~~a~~~g 153 (848)
.....+.+.+++.|..+... .+....+..++...+|+|++... ..++..+++++++..
T Consensus 18 ~~~~~l~~~L~~~~~~v~~~---------~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~ 77 (137)
T 3hdg_A 18 DAREWLSTIISNHFPEVWSA---------GDGEEGERLFGLHAPDVIITDIRMPKLGGLEMLDRIKAGG 77 (137)
T ss_dssp HHHHHHHHHHHTTCSCEEEE---------SSHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCcEEEEE---------CCHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 45667778888877655422 12234455566668999999865 346778898888865
No 427
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=21.29 E-value=3.4e+02 Score=22.20 Aligned_cols=58 Identities=10% Similarity=0.061 Sum_probs=36.6
Q ss_pred chHHHHHHHHhcc-CcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccC--CcHHHHHHHHHHc
Q 003093 87 NGIAALGDTLAAK-RCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY--NRGPVVFHVAQYL 152 (848)
Q Consensus 87 ~~~~~l~~~l~~~-g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~--~~~~~~~~~a~~~ 152 (848)
.....+...++.. |..++.. .. +....+..+....+|+|++.... .++..++++.++.
T Consensus 13 ~~~~~l~~~l~~~~~~~~~~~--~~------~~~~a~~~~~~~~~dlvllD~~l~~~~g~~~~~~l~~~ 73 (130)
T 1dz3_A 13 ELVSLLDEYISSQPDMEVIGT--AY------NGQDCLQMLEEKRPDILLLDIIMPHLDGLAVLERIRAG 73 (130)
T ss_dssp HHHHHHHHHHHTSTTEEEEEE--ES------SHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCceEEEE--eC------CHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHhc
Confidence 4566777778876 6665422 11 12334445555679999998654 4677788888874
No 428
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=21.09 E-value=1.3e+02 Score=30.42 Aligned_cols=84 Identities=11% Similarity=0.145 Sum_probs=53.9
Q ss_pred CCCeeEE--eCchHHHHHHhhhCCCccCcccCCCHHHHHHHhhcCCCCCceEEEEccH---------HHHHHHHhcCCcE
Q 003093 602 NYPIGYQ--VNSFARNYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDR---------AYAELFLSTRCEF 670 (848)
Q Consensus 602 ~~~i~~~--~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~---------~~~~~~~~~~~~l 670 (848)
..+|+++ .|++.+.-..+........++++.+.++.++++.+ |+++.-+... ..++. +.+..++
T Consensus 6 ~~~VaylGp~GtfS~~Aa~~~~~~~~~~~~p~~s~~~vf~aV~~----g~~d~gVvPiENS~~G~V~~tlD~-L~~~~~l 80 (313)
T 3mwb_A 6 AVTYTFLGPQGTFTEAALMQVPGAADATRIPCTNVNTALERVRA----GEADAAMVPIENSVEGGVTATLDA-IATGQEL 80 (313)
T ss_dssp -CEEEEESSTTSHHHHHHTTSTTGGGSEEEEESSHHHHHHHHHT----TSCSEEEEEEESCTTCCHHHHHHH-TTSSSCC
T ss_pred ccEEEEECCCCcHHHHHHHHHhhcCCccEEecCCHHHHHHHHHc----CCCCeeEEEEeecCCCccHHHHHH-hhCCCCe
Confidence 3468886 58887776643222223567889999999999999 6654333211 12222 2333479
Q ss_pred EEeCCccccCCceeeecCCC
Q 003093 671 SIVGQVFTKNGWGFAFPRDS 690 (848)
Q Consensus 671 ~~~~~~~~~~~~~~~~~k~s 690 (848)
+++++.+.+....+...+|.
T Consensus 81 ~IvgE~~l~I~h~Ll~~~g~ 100 (313)
T 3mwb_A 81 RIIREALVPITFVLVARPGV 100 (313)
T ss_dssp EEEEEEEEECCCEEEECTTC
T ss_pred EEEEEEEEeeeEEEEcCCCC
Confidence 99999888887777766654
No 429
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=21.04 E-value=3.3e+02 Score=22.01 Aligned_cols=58 Identities=5% Similarity=-0.095 Sum_probs=38.2
Q ss_pred chHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccC--CcHHHHHHHHHHcC
Q 003093 87 NGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY--NRGPVVFHVAQYLG 153 (848)
Q Consensus 87 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~--~~~~~~~~~a~~~g 153 (848)
.....+...+++.|..+.. .. +....+..+....+|+|++.... .++..++++.++..
T Consensus 13 ~~~~~l~~~l~~~g~~v~~---~~------~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~ 72 (127)
T 2jba_A 13 PIREMVCFVLEQNGFQPVE---AE------DYDSAVNQLNEPWPDLILLAWMLPGGSGIQFIKHLRRES 72 (127)
T ss_dssp HHHHHHHHHHHHTTCEEEE---EC------SHHHHHTTCSSSCCSEEEEESEETTEEHHHHHHHHHTST
T ss_pred HHHHHHHHHHHHCCceEEE---eC------CHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHhCc
Confidence 4556777778888877542 11 22344556666789999987653 46777888888754
No 430
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=20.93 E-value=2.8e+02 Score=23.77 Aligned_cols=58 Identities=17% Similarity=0.152 Sum_probs=39.8
Q ss_pred chHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccC--CcHHHHHHHHHHcC
Q 003093 87 NGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY--NRGPVVFHVAQYLG 153 (848)
Q Consensus 87 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~--~~~~~~~~~a~~~g 153 (848)
.....+...++..|..|... . +....+..+....+|+|++.... ..+..++++.++..
T Consensus 14 ~~~~~l~~~L~~~g~~v~~~---~------~~~~a~~~l~~~~~dliild~~l~~~~g~~~~~~l~~~~ 73 (155)
T 1qkk_A 14 DLRKAMQQTLELAGFTVSSF---A------SATEALAGLSADFAGIVISDIRMPGMDGLALFRKILALD 73 (155)
T ss_dssp HHHHHHHHHHHHTTCEEEEE---S------CHHHHHHTCCTTCCSEEEEESCCSSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCcEEEEE---C------CHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhhC
Confidence 45667778888888876522 1 23445566666789999998654 46777888888764
No 431
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=20.83 E-value=2.5e+02 Score=22.53 Aligned_cols=58 Identities=7% Similarity=-0.079 Sum_probs=37.4
Q ss_pred chHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEccC--CcHHHHHHHHHHcC
Q 003093 87 NGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY--NRGPVVFHVAQYLG 153 (848)
Q Consensus 87 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~--~~~~~~~~~a~~~g 153 (848)
.....+...++..|..+.. .. +....+..++...+|++++.... .++..++++.++..
T Consensus 11 ~~~~~l~~~l~~~g~~v~~---~~------~~~~a~~~~~~~~~dlil~D~~l~~~~g~~~~~~l~~~~ 70 (121)
T 2pl1_A 11 LLRHHLKVQIQDAGHQVDD---AE------DAKEADYYLNEHIPDIAIVDLGLPDEDGLSLIRRWRSND 70 (121)
T ss_dssp HHHHHHHHHHHHTTCEEEE---ES------SHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhcCCEEEE---eC------CHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHhcC
Confidence 3556677778888876542 11 22334555666789999987553 46677888887654
No 432
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=20.81 E-value=6.4e+02 Score=25.19 Aligned_cols=95 Identities=17% Similarity=0.212 Sum_probs=59.4
Q ss_pred eEEEEccCCchhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEeccC-------ChHHHHHHHHHHHHHcC--c---
Q 003093 5 TVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQ-------SDQYQMAAIAEIVDHYG--W--- 72 (848)
Q Consensus 5 V~aiIGp~~S~~~~ava~i~~~~~vP~Is~~at~p~ls~~~~p~f~r~~p-------~d~~q~~ai~~~~~~~~--w--- 72 (848)
+.-++||-..+...+++.+..+.++=++..+-+.. ...--||.|+.- +....-+++.++.+.++ |
T Consensus 24 iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d---~~~g~FfMr~~~~~~~~~~~~~~L~~~l~~la~~l~m~~~l~ 100 (302)
T 3o1l_A 24 RLVIACPDRVGIVAKVSNFLASHNGWITEASHHSD---NLSGWFFMRHEIRADTLPFDLDGFREAFTPIAEEFSMDWRIT 100 (302)
T ss_dssp EEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEE---TTTTEEEEEEEEEGGGSSSCHHHHHHHHHHHHHHHTCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEec---CCCCeEEEEEEEecCCCCCCHHHHHHHHHHHHHHhCCeeeec
Confidence 67789999999999999999999888776443321 112246667632 22344556666666654 3
Q ss_pred -----EEEEEEEEcCCCccchHHHHHHHHhcc--CcEEEE
Q 003093 73 -----REVIAIYVDDDHGRNGIAALGDTLAAK--RCRISF 105 (848)
Q Consensus 73 -----~~vaii~~dd~~g~~~~~~l~~~l~~~--g~~v~~ 105 (848)
++++++.+.. |. ..+.+.++.+.. +.+|+.
T Consensus 101 ~~~~~~ri~vl~Sg~--g~-nl~~ll~~~~~g~l~~~I~~ 137 (302)
T 3o1l_A 101 DSAQKKRVVLMASRE--SH-CLADLLHRWHSDELDCDIAC 137 (302)
T ss_dssp ETTSCCEEEEEECSC--CH-HHHHHHHHHHTTCSCSEEEE
T ss_pred ccCCCcEEEEEEeCC--ch-hHHHHHHHHHCCCCCcEEEE
Confidence 3788887554 33 455566555443 345544
No 433
>2jfq_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: DGL; 2.15A {Staphylococcus aureus}
Probab=20.80 E-value=2e+02 Score=28.65 Aligned_cols=31 Identities=6% Similarity=0.125 Sum_probs=22.1
Q ss_pred CCeEEEEccCCchhHHHHHHhhccCCccEEe
Q 003093 3 GQTVAIIGPQDAVTSHVVSHVANELQVPLLS 33 (848)
Q Consensus 3 ~~V~aiIGp~~S~~~~ava~i~~~~~vP~Is 33 (848)
.++.+|+=+..+..+.++..+-+..++|+|.
T Consensus 83 ~g~d~IVIaCNTas~~~l~~lr~~~~iPVig 113 (286)
T 2jfq_A 83 FDIKMLVIACNTATAVALEYLQKTLSISVIG 113 (286)
T ss_dssp SCCSEEEECCHHHHHHHHHHHHHHCSSEEEE
T ss_pred CCCCEEEEeCCchhHHHHHHHHHhCCCCEEe
Confidence 4677777766666555667777778888886
No 434
>1sg6_A Pentafunctional AROM polypeptide; shikimate pathway, aromatic amino acid biosynthesis, DHQS, O form J, domain movement, cyclase, lyase; HET: NAD; 1.70A {Emericella nidulans} SCOP: e.22.1.1 PDB: 1nr5_A* 1nrx_A* 1nua_A 1nva_A* 1nvb_A* 1nvd_A* 1nve_A* 1nvf_A* 1dqs_A*
Probab=20.54 E-value=2.4e+02 Score=29.62 Aligned_cols=94 Identities=6% Similarity=0.019 Sum_probs=59.6
Q ss_pred HHHcCcEEEEEEEEcCCCccchHHHHHHHHhcc------CcEEEEeeecCCC---CChHHHHHHHHHHhcCC--C---eE
Q 003093 67 VDHYGWREVIAIYVDDDHGRNGIAALGDTLAAK------RCRISFKAPLSVE---ATEDEITDLLVKVALTE--S---RI 132 (848)
Q Consensus 67 ~~~~~w~~vaii~~dd~~g~~~~~~l~~~l~~~------g~~v~~~~~~~~~---~~~~d~~~~l~~i~~~~--~---~v 132 (848)
++.++.+++.+|++...+.. ..+.+.+.|++. |+++.. ..++.+ .+.+.+......+++.+ + |+
T Consensus 31 ~~~~~~~k~liVtd~~v~~~-~~~~v~~~L~~~~~~~~~g~~~~~-~~~~~gE~~k~~~~v~~~~~~~~~~~~~~~r~d~ 108 (393)
T 1sg6_A 31 ISDCSSTTYVLVTDTNIGSI-YTPSFEEAFRKRAAEITPSPRLLI-YNRPPGEVSKSRQTKADIEDWMLSQNPPCGRDTV 108 (393)
T ss_dssp HHHSCCSEEEEEEEHHHHHH-HHHHHHHHHHHHHHHSSSCCEEEE-EEECSSGGGSSHHHHHHHHHHHHTSSSCCCTTCE
T ss_pred HHhcCCCeEEEEECCcHHHH-HHHHHHHHHHhhhccccCCceeEE-EEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCCCE
Confidence 46678889999986544332 566777777776 776642 234432 24467788888888777 7 89
Q ss_pred EEEEccC--CcHHHHHHHHHHcCCCCCCeEEEecC
Q 003093 133 IVVHTHY--NRGPVVFHVAQYLGMLGTGYVWIATS 165 (848)
Q Consensus 133 iv~~~~~--~~~~~~~~~a~~~g~~~~~~~wi~~~ 165 (848)
||..+.+ -+...++......|+ .++-|-|.
T Consensus 109 iIalGGGsv~D~ak~~Aa~~~rgi---p~i~IPTT 140 (393)
T 1sg6_A 109 VIALGGGVIGDLTGFVASTYMRGV---RYVQVPTT 140 (393)
T ss_dssp EEEEESHHHHHHHHHHHHHGGGCC---EEEEEECS
T ss_pred EEEECCcHHHHHHHHHHHHhcCCC---CEEEECCc
Confidence 8876543 455566655444454 45556554
No 435
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=20.53 E-value=2.9e+02 Score=26.38 Aligned_cols=59 Identities=14% Similarity=0.075 Sum_probs=39.0
Q ss_pred chHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHhcCCCeEEEEEcc--CCcHHHHHHHHHHcCC
Q 003093 87 NGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTH--YNRGPVVFHVAQYLGM 154 (848)
Q Consensus 87 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~--~~~~~~~~~~a~~~g~ 154 (848)
.....+...++..|..|... . +....+..+....+|+|++... ..++..++++.++.+.
T Consensus 34 ~~~~~l~~~L~~~g~~v~~~---~------~~~~al~~~~~~~~dlvllD~~lp~~~g~~~~~~lr~~~~ 94 (250)
T 3r0j_A 34 NIVELLSVSLKFQGFEVYTA---T------NGAQALDRARETRPDAVILDVXMPGMDGFGVLRRLRADGI 94 (250)
T ss_dssp HHHHHHHHHHHHTTCEEEEE---S------SHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHCCCEEEEE---C------CHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhcCC
Confidence 35667777888888776421 1 2234455555667999998855 3467788888888653
No 436
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=20.35 E-value=1.8e+02 Score=28.75 Aligned_cols=83 Identities=13% Similarity=0.083 Sum_probs=55.9
Q ss_pred CCeeEE--eCchHHHHHHhhhCCCccCcccCCCHHHHHHHhhcCCCCCceEEEEccH---------HHHHHHHhcCCcEE
Q 003093 603 YPIGYQ--VNSFARNYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDR---------AYAELFLSTRCEFS 671 (848)
Q Consensus 603 ~~i~~~--~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~---------~~~~~~~~~~~~l~ 671 (848)
.+|+++ .|++.+.-..+..+.....++++.+.++.++++.+ |+++.-+... ..++.+... +++
T Consensus 4 ~~iaylGp~Gtfs~~Aa~~~f~~~~~~~~~~~s~~~v~~aV~~----g~~d~gVvPiENS~~G~V~~t~DlL~~~--~l~ 77 (267)
T 2qmw_A 4 MQLYYLGPKGTFSYLACRQYFSENEATFQPKSNLFEVIKAVAD----DDTSIGVVPIENSIEGTINIVADALAQQ--DVF 77 (267)
T ss_dssp CEEEEECSTTSHHHHHHHHHCCTTSSEEEEESSHHHHHHHHHH----CSSEEEEEEEESCSSSCSHHHHHHHHTT--SSE
T ss_pred cEEEEECCCCcHHHHHHHHhhccCCceEEEcCCHHHHHHHHHc----CCCCEEEEEehhcCCCChHHHHHHhhcC--CcE
Confidence 357776 58887776644332221347899999999999999 6655444321 244444443 699
Q ss_pred EeCCccccCCceeeecCCCC
Q 003093 672 IVGQVFTKNGWGFAFPRDSP 691 (848)
Q Consensus 672 ~~~~~~~~~~~~~~~~k~sp 691 (848)
++++.+.+...++...+|..
T Consensus 78 I~gE~~l~I~h~Ll~~~g~~ 97 (267)
T 2qmw_A 78 AHGEIRLDINFALYGNGTDS 97 (267)
T ss_dssp EEEEEEEECCEEEECCSSCC
T ss_pred EEEEEEEEeeeEEEecCCCC
Confidence 99998888888888777643
No 437
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=20.15 E-value=5e+02 Score=24.04 Aligned_cols=27 Identities=19% Similarity=0.303 Sum_probs=21.3
Q ss_pred CCCeEEEEccCCchhHHHHHHhhccCC
Q 003093 2 EGQTVAIIGPQDAVTSHVVSHVANELQ 28 (848)
Q Consensus 2 ~~~V~aiIGp~~S~~~~ava~i~~~~~ 28 (848)
+.++++|+||..++=+..+..++....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 456899999999997777777777654
No 438
>4exl_A PBP 1, phosphate-binding protein PSTS 1; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; 1.70A {Streptococcus pneumoniae}
Probab=20.14 E-value=1.4e+02 Score=29.21 Aligned_cols=70 Identities=9% Similarity=0.004 Sum_probs=46.0
Q ss_pred eHHHHHHHHHhC-CCCcceEEeeCCCCCCCCChhHHHHHHhcCeeeEEeeceeeec-C--ceeeeeecccccccceEEEE
Q 003093 404 CIDVFTAAINLL-PYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDIAIIT-N--RTKMADFTQPYIESGLVVVA 479 (848)
Q Consensus 404 ~~dll~~i~~~l-~~~~~~~~~~~~~~~~n~s~~~~i~~l~~g~~D~~~~~~~~t~-~--R~~~~dfs~p~~~~~~~~v~ 479 (848)
.-.+++.+.++. +.++.+.. +.-...+.+|.+|++|+++.+..... + ....+ ...|+..+++++++
T Consensus 18 ~~~~~~~F~~~~P~v~i~v~~---------~gS~~gi~~l~~g~~Dig~~~~~~~~~~~~~~~~l-~~~~ia~d~lvvvv 87 (265)
T 4exl_A 18 VEVAADEFGTIHVGKTVNVQG---------GGSGTGLSQVQSGAVDIGNSDVFAEEKDGIDASAL-VDHKVAVAGLALIV 87 (265)
T ss_dssp HHHHHHHHHHHSTTCEEEEEE---------ECHHHHHHHHHTTSSSEEEESSCGGGSTTCCGGGE-ECCEEEEEEEEEEE
T ss_pred HHHHHHHHHHHCCCceEEEee---------CCcHHHHHHHHcCCCccccccCCcchhhcccccCc-eEeeEEEEEEEEEE
Confidence 345666777666 55555543 23678899999999999987543321 0 11111 36788999999999
Q ss_pred eccC
Q 003093 480 PVRK 483 (848)
Q Consensus 480 ~~~~ 483 (848)
+...
T Consensus 88 ~~~~ 91 (265)
T 4exl_A 88 NKEV 91 (265)
T ss_dssp CTTC
T ss_pred CCCC
Confidence 8655
No 439
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=20.06 E-value=2.8e+02 Score=23.20 Aligned_cols=58 Identities=9% Similarity=0.029 Sum_probs=38.8
Q ss_pred chHHHHHHHHhccCcEEEEeeecCCCCChHHHHHHHHHHh--cCCCeEEEEEccC--CcHHHHHHHHHHcC
Q 003093 87 NGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVA--LTESRIIVVHTHY--NRGPVVFHVAQYLG 153 (848)
Q Consensus 87 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~--~~~~~viv~~~~~--~~~~~~~~~a~~~g 153 (848)
.....+...+++.|..+... . +....+..+. ...+|+|++.... .++..+++++++..
T Consensus 14 ~~~~~l~~~l~~~g~~v~~~---~------~~~~a~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~ 75 (143)
T 3jte_A 14 TILQNIKFLLEIDGNEVLTA---S------SSTEGLRIFTENCNSIDVVITDMKMPKLSGMDILREIKKIT 75 (143)
T ss_dssp HHHHHHHHHHHHTTCEEEEE---S------SHHHHHHHHHHTTTTCCEEEEESCCSSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCceEEEe---C------CHHHHHHHHHhCCCCCCEEEEeCCCCCCcHHHHHHHHHHhC
Confidence 45677888888888765422 1 2233444555 4689999998653 46778888888864
No 440
>3hhg_A Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 3.20A {Neisseria meningitidis serogroup B}
Probab=20.00 E-value=49 Score=32.96 Aligned_cols=80 Identities=11% Similarity=0.032 Sum_probs=47.6
Q ss_pred ceEEEEecCCCCccceEEeCCCcceeeeeHHHHHHHHHhCCCCcceEEeeCCCCCCCCChhHHHHHHhcCeeeEEeecee
Q 003093 376 RHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDIA 455 (848)
Q Consensus 376 ~~lrv~v~~~~~~~p~~~~~~~~~~~G~~~dll~~i~~~l~~~~~~~~~~~~~~~~n~s~~~~i~~l~~g~~D~~~~~~~ 455 (848)
..|+||+.. .+ ...+-..++..+.+..+ .+.+.... .+.+..+.+|++|+++....
T Consensus 93 g~l~I~~~~--~~-----------~~~~l~~~l~~f~~~~P-~v~i~l~~----------~~~~~~l~~~~~Dl~i~~~~ 148 (306)
T 3hhg_A 93 GVLSVDSAM--PM-----------VLHLLAPLAAKFNERYP-HIRLSLVS----------SEGYINLIERKVDIALRAGE 148 (306)
T ss_dssp EEEEEEBCH--HH-----------HHHTHHHHHHHHHHHCT-TEEEEEEC----------CSSSHHHHTTSSSCEEESCC
T ss_pred CcEEEEccH--HH-----------HHHHHHHHHHHHHHHCC-CeEEEEEe----------ccchhhHhhcCccEEEEeCC
Confidence 468888762 11 12455677888887775 33344431 12345678899999987433
Q ss_pred eecCceeeeeecccccccceEEEEeccC
Q 003093 456 IITNRTKMADFTQPYIESGLVVVAPVRK 483 (848)
Q Consensus 456 ~t~~R~~~~dfs~p~~~~~~~~v~~~~~ 483 (848)
.... .+ -..|.....+++++++..
T Consensus 149 ~~~~---~l-~~~~L~~~~~~~v~~~~~ 172 (306)
T 3hhg_A 149 LDDS---GL-RARHLFDSRFRVIASPEY 172 (306)
T ss_dssp CCCS---SC-EEEEEEEEEEEEEECHHH
T ss_pred CCCC---Ce-EEEEeeeeEEEEEECHHH
Confidence 2222 22 245677788888887543
Done!