BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003094
(848 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FI56|CLPC1_ARATH Chaperone protein ClpC1, chloroplastic OS=Arabidopsis thaliana
GN=CLPC1 PE=1 SV=1
Length = 929
Score = 1390 bits (3598), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 706/771 (91%), Positives = 738/771 (95%), Gaps = 7/771 (0%)
Query: 81 GRAGGFVVKAMFERFTEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLE 140
GR GFV A+ FT +A +V+ L+ EEAR+LGHNYIGSEHLLLGLLREGEGVAARVLE
Sbjct: 161 GRGSGFV--AVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLE 218
Query: 141 NLGADPSNIRTQVIRMVGESTEAVGAGVGGGSSGNKMPTLEEYGTNLTKLAEEGKLDPVV 200
NLGADPSNIRTQVIRMVGE+ E V A VGGGSS NKMPTLEEYGTNLTKLAEEGKLDPVV
Sbjct: 219 NLGADPSNIRTQVIRMVGENNE-VTANVGGGSSSNKMPTLEEYGTNLTKLAEEGKLDPVV 277
Query: 201 GRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLD 260
GRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVP+TIEGKKVITLD
Sbjct: 278 GRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPETIEGKKVITLD 337
Query: 261 MGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPS 320
MGLLVAGTKYRGEFEERLKKLMEEI+QSDEIILFIDEVHTLIGAGAAEGAIDAANILKP+
Sbjct: 338 MGLLVAGTKYRGEFEERLKKLMEEIRQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPA 397
Query: 321 LARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHK 380
LARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEP+VDETIQILKGLRERYEIHHK
Sbjct: 398 LARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPTVDETIQILKGLRERYEIHHK 457
Query: 381 LRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQI 440
LRYTDE+LV+AAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQ+PEEARELEKELRQI
Sbjct: 458 LRYTDESLVAAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQVPEEARELEKELRQI 517
Query: 441 TKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQ 500
TKEKNEAVRGQDFEKAG LRDRE++L+A++SA+ KGKEMSKAE+E G+ GP+VTE DIQ
Sbjct: 518 TKEKNEAVRGQDFEKAGTLRDREIELRAEVSAIQAKGKEMSKAESETGEEGPMVTESDIQ 577
Query: 501 HIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRP 560
HIVS+WTGIPVEKVSTDESDRLLKMEETLHKR+IGQDEAVKAISRAIRRARVGLKNPNRP
Sbjct: 578 HIVSSWTGIPVEKVSTDESDRLLKMEETLHKRIIGQDEAVKAISRAIRRARVGLKNPNRP 637
Query: 561 IASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYT 620
IASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYT
Sbjct: 638 IASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYT 697
Query: 621 EGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMT 680
EGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMT
Sbjct: 698 EGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMT 757
Query: 681 SNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQL 740
SNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQL
Sbjct: 758 SNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQL 817
Query: 741 TKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLE 800
TKLEVKEIADI+LKEVF+RLK K+IELQVTERF+ERVV+EGYNPSYGARPLRRAIMRLLE
Sbjct: 818 TKLEVKEIADILLKEVFERLKKKEIELQVTERFKERVVDEGYNPSYGARPLRRAIMRLLE 877
Query: 801 DSMAEKMLAREIKEGDSVIVDVDSDGNVTVLNGSSGAP----ESLADPLPV 847
DSMAEKMLAREIKEGDSVIVDVD++GNVTVLNG SG P E D LPV
Sbjct: 878 DSMAEKMLAREIKEGDSVIVDVDAEGNVTVLNGGSGTPTTSLEEQEDSLPV 928
Score = 140 bits (353), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 85/160 (53%), Positives = 116/160 (72%), Gaps = 8/160 (5%)
Query: 3 RLLAQLTNAPALVPGGRHFQSQNAGKSRRNVKMM-SYMQPSASRISSFSGLRRSNALDTF 61
R+LAQ T P+L R+ S+ +G+SRR+VKMM S +Q S R+ F GLR +NALDT
Sbjct: 6 RVLAQST-PPSLACYQRNVPSRGSGRSRRSVKMMCSQLQVSGLRMQGFMGLRGNNALDTL 64
Query: 62 ---TCDFHSTVAVSLSSRRGKSGRAGGFVVKAMFERFTEKAIKVIMLAQEEARRLGHNYI 118
DFHS V +++ +GK+ R F VKAMFERFTEKAIKVIMLAQEEARRLGHN++
Sbjct: 65 GKSRQDFHSKVRQAMNVPKGKASR---FTVKAMFERFTEKAIKVIMLAQEEARRLGHNFV 121
Query: 119 GSEHLLLGLLREGEGVAARVLENLGADPSNIRTQVIRMVG 158
G+E +LLGL+ EG G+AA+VL+++G + + R +V +++G
Sbjct: 122 GTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIG 161
>sp|P31541|CLPAA_SOLLC ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4A,
chloroplastic OS=Solanum lycopersicum GN=CD4A PE=3 SV=1
Length = 926
Score = 1390 bits (3597), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 707/769 (91%), Positives = 736/769 (95%), Gaps = 4/769 (0%)
Query: 81 GRAGGFVVKAMFERFTEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLE 140
GR GF+ A+ FT +A +V+ L+ EEAR+LGHNYIGSEHLLLGLLREGEGVAARVLE
Sbjct: 160 GRGSGFI--AVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLE 217
Query: 141 NLGADPSNIRTQVIRMVGESTEAVGAGVGGGSSGNKMPTLEEYGTNLTKLAEEGKLDPVV 200
NLGADP+NIRTQVIRMVGES+EAVGA VGGG+SG KMPTLEEYGTNLTKLAEEGKLDPVV
Sbjct: 218 NLGADPTNIRTQVIRMVGESSEAVGASVGGGTSGLKMPTLEEYGTNLTKLAEEGKLDPVV 277
Query: 201 GRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLD 260
GRQ QIERV QILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIA+GDVP+TIEGKKVITLD
Sbjct: 278 GRQAQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIANGDVPETIEGKKVITLD 337
Query: 261 MGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPS 320
MGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKP+
Sbjct: 338 MGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPA 397
Query: 321 LARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHK 380
LARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHK
Sbjct: 398 LARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHK 457
Query: 381 LRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQI 440
L YTDEA+ +AA+LS+QYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQI
Sbjct: 458 LHYTDEAIEAAAKLSHQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQI 517
Query: 441 TKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGD-VGPVVTEVDI 499
TKEKNEAVRGQDFEKAGELRDREMDLKAQISAL+DK KE SKAE+EAGD GP+VTE DI
Sbjct: 518 TKEKNEAVRGQDFEKAGELRDREMDLKAQISALIDKNKEKSKAESEAGDAAGPIVTEADI 577
Query: 500 QHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNR 559
QHIVS+WTGIPVEKVSTDESDRLLKMEETLH RVIGQDEAVKAISRAIRRARVGLKNPNR
Sbjct: 578 QHIVSSWTGIPVEKVSTDESDRLLKMEETLHTRVIGQDEAVKAISRAIRRARVGLKNPNR 637
Query: 560 PIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGY 619
PIASFIFSGPTGVGKSELAK+LA YYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGY
Sbjct: 638 PIASFIFSGPTGVGKSELAKSLATYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGY 697
Query: 620 TEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIM 679
TEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIM
Sbjct: 698 TEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIM 757
Query: 680 TSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQ 739
TSNVGSSVIEKGGRRIGFDLD+DEKDSSYNRIKSLVTEELKQYFRPEFLNRL EMIVFRQ
Sbjct: 758 TSNVGSSVIEKGGRRIGFDLDFDEKDSSYNRIKSLVTEELKQYFRPEFLNRLSEMIVFRQ 817
Query: 740 LTKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLL 799
LTKLEVKEIADIMLKEVF RLK K+IELQVTERFR+RVV+EGYNPSYGARPLRRAIMRLL
Sbjct: 818 LTKLEVKEIADIMLKEVFVRLKNKEIELQVTERFRDRVVDEGYNPSYGARPLRRAIMRLL 877
Query: 800 EDSMAEKMLAREIKEGDSVIVDVDSDGNVTVLNGSSGAPESLADPLPVV 848
EDSMAEKMLA EIKEGDSVIVDVDSDGNVTVLNG+SGAP A P P++
Sbjct: 878 EDSMAEKMLAGEIKEGDSVIVDVDSDGNVTVLNGTSGAPSDSA-PEPIL 925
Score = 148 bits (374), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 80/165 (48%), Positives = 110/165 (66%), Gaps = 7/165 (4%)
Query: 1 MARLLAQLTNAPALVPGGRHFQSQNAGKSRRNVKMMSYMQPSASRISSFSGLRRSNALDT 60
MAR L Q TN V G R Q + K +R V+M+ ++ +SR+++F+GLR NALDT
Sbjct: 2 MARALVQSTNILPSVAGERAGQFNGSRKDQRTVRMLCNVKCCSSRLNNFAGLRGCNALDT 61
Query: 61 FTCD----FHSTVAVSLSSRRGKSGRAGGFVVKAMFERFTEKAIKVIMLAQEEARRLGHN 116
HS VA + RR + R FV KAMFERFTEKAIKVIMLAQEEARRLGHN
Sbjct: 62 LLVKSGETLHSKVAAATFVRRPRGCR---FVPKAMFERFTEKAIKVIMLAQEEARRLGHN 118
Query: 117 YIGSEHLLLGLLREGEGVAARVLENLGADPSNIRTQVIRMVGEST 161
++G+E +LLGL+ EG G+AA+VL+++G + + R +V +++G +
Sbjct: 119 FVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGS 163
>sp|P35100|CLPC_PEA Chaperone protein ClpC, chloroplastic OS=Pisum sativum PE=2 SV=1
Length = 922
Score = 1389 bits (3594), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 698/767 (91%), Positives = 734/767 (95%), Gaps = 2/767 (0%)
Query: 81 GRAGGFVVKAMFERFTEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLE 140
GR GFV A+ FT +A +V+ L+QEEAR+LGHNYIGSEHLLLGLLREGEGVAARVLE
Sbjct: 158 GRGSGFV--AVEIPFTPRAKRVLELSQEEARQLGHNYIGSEHLLLGLLREGEGVAARVLE 215
Query: 141 NLGADPSNIRTQVIRMVGESTEAVGAGVGGGSSGNKMPTLEEYGTNLTKLAEEGKLDPVV 200
NLGADP+NIRTQVIRMVGES ++V A VG GSS NK PTLEEYGTNLTKLAEEGKLDPVV
Sbjct: 216 NLGADPTNIRTQVIRMVGESADSVTATVGSGSSNNKTPTLEEYGTNLTKLAEEGKLDPVV 275
Query: 201 GRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLD 260
GRQPQIERV QILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIA+GDVP+TIEGKKVITLD
Sbjct: 276 GRQPQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIANGDVPETIEGKKVITLD 335
Query: 261 MGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPS 320
MGLLVAGTKYRGEFEERLKKLMEEIKQSD+IILFIDEVHTLIGAGAAEGAIDAANILKP+
Sbjct: 336 MGLLVAGTKYRGEFEERLKKLMEEIKQSDDIILFIDEVHTLIGAGAAEGAIDAANILKPA 395
Query: 321 LARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHK 380
LARGELQCIGATTLDEYRKHIEKDP LERRFQPVKVPEP+VDETIQILKGLRERYEIHHK
Sbjct: 396 LARGELQCIGATTLDEYRKHIEKDPDLERRFQPVKVPEPTVDETIQILKGLRERYEIHHK 455
Query: 381 LRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQI 440
LRYTDEAL++AAQLSYQYISDRFLPDKAIDL+DEAGSRVRL+HAQLPEEA+EL+KE+R+I
Sbjct: 456 LRYTDEALIAAAQLSYQYISDRFLPDKAIDLVDEAGSRVRLQHAQLPEEAKELDKEVRKI 515
Query: 441 TKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQ 500
KEK E VR QDFEKAGELRD+EMDLKAQISAL++KGKEMSKAETE D GP+VTEVDIQ
Sbjct: 516 VKEKEEYVRNQDFEKAGELRDKEMDLKAQISALIEKGKEMSKAETETADEGPIVTEVDIQ 575
Query: 501 HIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRP 560
HIVS+WTGIPV+KVS DESDRLLKME+TLHKR+IGQDEAV+AISRAIRRARVGLKNPNRP
Sbjct: 576 HIVSSWTGIPVDKVSADESDRLLKMEDTLHKRIIGQDEAVQAISRAIRRARVGLKNPNRP 635
Query: 561 IASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYT 620
IASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYT
Sbjct: 636 IASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYT 695
Query: 621 EGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMT 680
EGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMT
Sbjct: 696 EGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMT 755
Query: 681 SNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQL 740
SNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQL
Sbjct: 756 SNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQL 815
Query: 741 TKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLE 800
TKLEVKEIADIMLKEVF RLKTK+IELQVTERFR+RVV+EGYNPSYGARPLRRAIMRLLE
Sbjct: 816 TKLEVKEIADIMLKEVFQRLKTKEIELQVTERFRDRVVDEGYNPSYGARPLRRAIMRLLE 875
Query: 801 DSMAEKMLAREIKEGDSVIVDVDSDGNVTVLNGSSGAPESLADPLPV 847
DSMAEKMLAREIKEGDSVIVDVDSDG V VLNGSSG PESL + L +
Sbjct: 876 DSMAEKMLAREIKEGDSVIVDVDSDGKVIVLNGSSGTPESLPEALSI 922
Score = 166 bits (420), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 84/161 (52%), Positives = 118/161 (73%), Gaps = 6/161 (3%)
Query: 1 MARLLAQLTNAPALVPGGRHFQSQNAGKSRRNVKMMSYMQPSASRISSFSGLRRSNALDT 60
MAR+LAQ + P LV G + Q + +GKS+R+VK M ++ S R+S FSGLR N L+T
Sbjct: 1 MARVLAQSLSVPGLVAGHKDSQHKGSGKSKRSVKTMCALRTSGLRMSGFSGLRTFNHLNT 60
Query: 61 FT---CDFHSTVAVSLSSRRGKSGRAGGFVVKAMFERFTEKAIKVIMLAQEEARRLGHNY 117
DFHS V+ ++SSRR ++ R F+ +AMFERFTEKAIKVIMLAQEEARRLGHN+
Sbjct: 61 MMRPGLDFHSKVSKAVSSRRARAKR---FIPRAMFERFTEKAIKVIMLAQEEARRLGHNF 117
Query: 118 IGSEHLLLGLLREGEGVAARVLENLGADPSNIRTQVIRMVG 158
+G+E +LLGL+ EG G+AA+VL+++G + + R +V +++G
Sbjct: 118 VGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIG 158
>sp|P31542|CLPAB_SOLLC ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B,
chloroplastic OS=Solanum lycopersicum GN=CD4B PE=3 SV=1
Length = 923
Score = 1387 bits (3591), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 713/768 (92%), Positives = 739/768 (96%), Gaps = 3/768 (0%)
Query: 81 GRAGGFVVKAMFERFTEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLE 140
GR GFV A+ FT +A +V+ L+ EEAR+LGHNYIGSEHLLLGLLREGEGVAARVLE
Sbjct: 158 GRGSGFV--AVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLE 215
Query: 141 NLGADPSNIRTQVIRMVGESTEAVGAGVGGGSSGNKMPTLEEYGTNLTKLAEEGKLDPVV 200
NLGADPSNIRTQVIRMVGES EAVGA VGGG+SG KMPTLEEYGTNLTKLAEEGKLDPVV
Sbjct: 216 NLGADPSNIRTQVIRMVGESNEAVGASVGGGTSGQKMPTLEEYGTNLTKLAEEGKLDPVV 275
Query: 201 GRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLD 260
GRQPQIERV QILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIA+GDVP+TIEGKKVITLD
Sbjct: 276 GRQPQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIANGDVPETIEGKKVITLD 335
Query: 261 MGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPS 320
MGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKP+
Sbjct: 336 MGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPA 395
Query: 321 LARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHK 380
LARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEP+VDETIQILKGLRERYEIHHK
Sbjct: 396 LARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPTVDETIQILKGLRERYEIHHK 455
Query: 381 LRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQI 440
LRYTDE LV+AAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEA+ELEKELRQI
Sbjct: 456 LRYTDEDLVAAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEAKELEKELRQI 515
Query: 441 TKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQ 500
TKEKNEAVRGQDFEKAGELRDREMDLKAQI+AL+DK KE+SKAE+EA D GP+VTE DIQ
Sbjct: 516 TKEKNEAVRGQDFEKAGELRDREMDLKAQITALIDKNKEVSKAESEAADTGPLVTEADIQ 575
Query: 501 HIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRP 560
HIVS+WTGIPVEKVSTDESDRLLKMEETLH R+IGQDEAVKAISRAIRRARVGLKNPNRP
Sbjct: 576 HIVSSWTGIPVEKVSTDESDRLLKMEETLHTRIIGQDEAVKAISRAIRRARVGLKNPNRP 635
Query: 561 IASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYT 620
IASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYT
Sbjct: 636 IASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYT 695
Query: 621 EGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMT 680
EGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMT
Sbjct: 696 EGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMT 755
Query: 681 SNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQL 740
SNVGSSVIEKGGRRIGFDLD DEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQL
Sbjct: 756 SNVGSSVIEKGGRRIGFDLDLDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQL 815
Query: 741 TKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLE 800
TKLEVKEIADIMLKEVF+RLK K+IELQVTERFR+RVV+EGYNPSYGARPLRRAIMRLLE
Sbjct: 816 TKLEVKEIADIMLKEVFERLKVKEIELQVTERFRDRVVDEGYNPSYGARPLRRAIMRLLE 875
Query: 801 DSMAEKMLAREIKEGDSVIVDVDSDGNVTVLNGSSGAPESLA-DPLPV 847
DSMAEKMLA EIKEGDSVIVDVDSDGNVTVLNGSSG P A +P+PV
Sbjct: 876 DSMAEKMLANEIKEGDSVIVDVDSDGNVTVLNGSSGTPSDPAPEPIPV 923
Score = 145 bits (366), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 78/161 (48%), Positives = 107/161 (66%), Gaps = 6/161 (3%)
Query: 1 MARLLAQLTNAPALVPGGRHFQSQNAGKSRRNVKMMSYMQPSASRISSFSGLRRSNALDT 60
MAR L Q T+ P+ V G R + +GK++R V M+ Q S+ + F+GLR NA+DT
Sbjct: 1 MARALVQSTSIPSSVAGERTTKFNGSGKTKRAVTMLCNAQSSSLTLRDFTGLRGCNAIDT 60
Query: 61 FTCD---FHSTVAVSLSSRRGKSGRAGGFVVKAMFERFTEKAIKVIMLAQEEARRLGHNY 117
S VA + RR + R FV KAMFERFTEKAIKVIMLAQEEARRLGHN+
Sbjct: 61 LVRSGETLQSKVAAATYVRRPRGCR---FVPKAMFERFTEKAIKVIMLAQEEARRLGHNF 117
Query: 118 IGSEHLLLGLLREGEGVAARVLENLGADPSNIRTQVIRMVG 158
+G+E +LLGL+ EG G+AA+VL+++G + + R +V +++G
Sbjct: 118 VGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIG 158
>sp|Q7F9I1|CLPC1_ORYSJ Chaperone protein ClpC1, chloroplastic OS=Oryza sativa subsp.
japonica GN=CLPC1 PE=2 SV=2
Length = 918
Score = 1354 bits (3504), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 693/767 (90%), Positives = 738/767 (96%), Gaps = 2/767 (0%)
Query: 81 GRAGGFVVKAMFERFTEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLE 140
GR GFV A+ FT +A +V+ L+ EEAR+LGHNYIGSEHLLLGLLREGEGVAARVLE
Sbjct: 154 GRGSGFV--AVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLE 211
Query: 141 NLGADPSNIRTQVIRMVGESTEAVGAGVGGGSSGNKMPTLEEYGTNLTKLAEEGKLDPVV 200
+LGADP+NIRTQVIRMVGESTEAVGAGVGGGSSG KMPTLEEYGTNLTKLAEEGKLDPVV
Sbjct: 212 SLGADPNNIRTQVIRMVGESTEAVGAGVGGGSSGQKMPTLEEYGTNLTKLAEEGKLDPVV 271
Query: 201 GRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLD 260
GRQ QIERV QILGRRTKNNPCLIGEPGVGKTAIAEGLAQRI++GDVP+TIEGKKVITLD
Sbjct: 272 GRQDQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRISNGDVPETIEGKKVITLD 331
Query: 261 MGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPS 320
MGLLVAGTKYRGEFEERLKKLMEEIKQ+D+IILFIDEVHTLIGAGAAEGAIDAANILKP+
Sbjct: 332 MGLLVAGTKYRGEFEERLKKLMEEIKQNDDIILFIDEVHTLIGAGAAEGAIDAANILKPA 391
Query: 321 LARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHK 380
LARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEP+VDETIQIL+GLRERYE+HHK
Sbjct: 392 LARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPTVDETIQILRGLRERYELHHK 451
Query: 381 LRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQI 440
LRYTD++L++AAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLP+EA+EL+KELRQ+
Sbjct: 452 LRYTDDSLIAAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPDEAKELDKELRQV 511
Query: 441 TKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQ 500
TK+KNEAVRGQDFEKAGELRDREM+LKAQI+A++DK KEM KAETE+G+VGP+VTE DIQ
Sbjct: 512 TKDKNEAVRGQDFEKAGELRDREMELKAQITAIIDKSKEMVKAETESGEVGPLVTEADIQ 571
Query: 501 HIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRP 560
HIVS+WTGIPVEKVS+DESDRLLKMEETLH R+IGQDEAVKAISRAIRRARVGLKNPNRP
Sbjct: 572 HIVSSWTGIPVEKVSSDESDRLLKMEETLHTRIIGQDEAVKAISRAIRRARVGLKNPNRP 631
Query: 561 IASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYT 620
IASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYT
Sbjct: 632 IASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYT 691
Query: 621 EGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMT 680
EGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMT
Sbjct: 692 EGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMT 751
Query: 681 SNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQL 740
SNVGSSVIEKGGR+IGFDLDYDEKD+SYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQL
Sbjct: 752 SNVGSSVIEKGGRKIGFDLDYDEKDTSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQL 811
Query: 741 TKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLE 800
TKLEVKEIADIMLKEVFDRLK KDI+LQVTE+FR+RVV+EGYNPSYGARPLRRAIMRLLE
Sbjct: 812 TKLEVKEIADIMLKEVFDRLKAKDIDLQVTEKFRDRVVDEGYNPSYGARPLRRAIMRLLE 871
Query: 801 DSMAEKMLAREIKEGDSVIVDVDSDGNVTVLNGSSGAPESLADPLPV 847
DS+AEKMLA E+KEGDS IVDVDS+G V VLNG SG PE LA L V
Sbjct: 872 DSLAEKMLAGEVKEGDSAIVDVDSEGKVIVLNGGSGVPEPLAPALSV 918
Score = 124 bits (310), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 66/137 (48%), Positives = 91/137 (66%), Gaps = 6/137 (4%)
Query: 28 KSRRNVKMMSYMQPSASRISSFSGLRRSNALDTFTC---DFHSTVAVSLSSRRGKSGRAG 84
+ R MM M + F GLR++N LD+ + DF S VA +S RG R
Sbjct: 24 RVRARATMMRTMPTRTLTLGGFQGLRQTNFLDSRSVIKRDFGSIVASQISRPRGLGSRG- 82
Query: 85 GFVVKAMFERFTEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLENLGA 144
VV+AMFERFTEKAIKVIMLAQEEARRLGHN++G+E +LLGL+ EG G+AA+VL+++G
Sbjct: 83 --VVRAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGI 140
Query: 145 DPSNIRTQVIRMVGEST 161
+ + R +V +++G +
Sbjct: 141 NLKDARVEVEKIIGRGS 157
>sp|Q2QVG9|CLPC2_ORYSJ Chaperone protein ClpC2, chloroplastic OS=Oryza sativa subsp.
japonica GN=CLPC2 PE=2 SV=2
Length = 919
Score = 1348 bits (3488), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 688/764 (90%), Positives = 738/764 (96%), Gaps = 3/764 (0%)
Query: 81 GRAGGFVVKAMFERFTEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLE 140
GR GFV A+ FT +A +V+ L+ EEAR+LGHNYIGSEHLLLGLLREGEGVAARVLE
Sbjct: 155 GRGNGFV--AVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLE 212
Query: 141 NLGADPSNIRTQVIRMVGESTEAVGAGVGGGSSGNKMPTLEEYGTNLTKLAEEGKLDPVV 200
+LGADPSNIRTQVIRM+GE+TEAVGAGVGGGSSGNKMPTLEEYGTNLTKLAEEGKLDPVV
Sbjct: 213 SLGADPSNIRTQVIRMIGETTEAVGAGVGGGSSGNKMPTLEEYGTNLTKLAEEGKLDPVV 272
Query: 201 GRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLD 260
GRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRI++GDVP+TIEGKKVITLD
Sbjct: 273 GRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRISTGDVPETIEGKKVITLD 332
Query: 261 MGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPS 320
MGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKP+
Sbjct: 333 MGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPA 392
Query: 321 LARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHK 380
LARGELQCIGATTLDEYRKHIEKDPALERRFQPV+VPEP+VDETI+IL+GLRERYEIHHK
Sbjct: 393 LARGELQCIGATTLDEYRKHIEKDPALERRFQPVRVPEPTVDETIEILRGLRERYEIHHK 452
Query: 381 LRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQI 440
LRYTD+AL+SAA+LSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQ+PEEAREL+KEL+QI
Sbjct: 453 LRYTDDALISAAKLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQVPEEARELDKELKQI 512
Query: 441 TKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQ 500
TK+KNEAVR QDFEKAGELRDREM+LKAQI+AL+DK KEMSKAETE+G+ GP+V E DIQ
Sbjct: 513 TKDKNEAVRSQDFEKAGELRDREMELKAQITALIDKSKEMSKAETESGETGPLVNEADIQ 572
Query: 501 HIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRP 560
HIVS+WTGIPVEKVS+DESD+LLKMEETLH+RVIGQDEAVKAISR+IRRARVGLKNPNRP
Sbjct: 573 HIVSSWTGIPVEKVSSDESDKLLKMEETLHQRVIGQDEAVKAISRSIRRARVGLKNPNRP 632
Query: 561 IASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYT 620
IASFIF+GPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYT
Sbjct: 633 IASFIFAGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYT 692
Query: 621 EGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMT 680
EGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMT
Sbjct: 693 EGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMT 752
Query: 681 SNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQL 740
SNVGSSVIEKGGR+IGFDLDYDEKDSSY+RIKSLV EE+KQYFRPEFLNRLDEMIVFRQL
Sbjct: 753 SNVGSSVIEKGGRKIGFDLDYDEKDSSYSRIKSLVVEEMKQYFRPEFLNRLDEMIVFRQL 812
Query: 741 TKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLE 800
TKLEVKEIA+IMLKEVFDRLK KDI+LQVTE+F+ER+V+EG+NPSYGARPLRRAIMRLLE
Sbjct: 813 TKLEVKEIAEIMLKEVFDRLKAKDIDLQVTEKFKERIVDEGFNPSYGARPLRRAIMRLLE 872
Query: 801 DSMAEKMLAREIKEGDSVIVDVDSDGNVTVLNGSSGAPESLADP 844
DS+AEKMLA E+KEGDS IVDVDS+G V VLNG SG PE L+ P
Sbjct: 873 DSLAEKMLAGEVKEGDSAIVDVDSEGKVIVLNGQSGLPE-LSTP 915
Score = 109 bits (272), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 61/138 (44%), Positives = 92/138 (66%), Gaps = 5/138 (3%)
Query: 22 QSQNAGKSRRNVKMMSYMQPSASRISSFSGLRRSNALD-TFTCDFHSTVAVSLSSRRGKS 80
Q + +RR M++ ++++F GLR ++ T +F STVA S R ++
Sbjct: 22 QRWKSHGTRRPPSMLAMSLSRPVKMAAFVGLRSVHSFSVTPVTNFRSTVASYRSRRGRRA 81
Query: 81 GRAGGFVVKAMFERFTEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLE 140
FV ++MFERFTEKAIKVIMLAQEEARRLGHN++G+E +LLGL+ EG G+AA+VL+
Sbjct: 82 R----FVTRSMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLK 137
Query: 141 NLGADPSNIRTQVIRMVG 158
++G + + R +V +++G
Sbjct: 138 SMGINLKDARVEVEKIIG 155
>sp|P46523|CLPA_BRANA ATP-dependent Clp protease ATP-binding subunit clpA homolog,
chloroplastic (Fragment) OS=Brassica napus GN=CLPA PE=2
SV=1
Length = 874
Score = 1329 bits (3439), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 685/771 (88%), Positives = 722/771 (93%), Gaps = 9/771 (1%)
Query: 81 GRAGGFVVKAMFERFTEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLE 140
GR GFV A+ FT +A +V+ L+ EEAR+LGHNYIGSEHLLLGLLREGEGVAARVLE
Sbjct: 108 GRGSGFV--AVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLE 165
Query: 141 NLGADPSNIRTQVIRMVGESTEAVGAGVGGGSSGNKMPTLEEYGTNLTKLAEEGKLDPVV 200
NLGADPSNIRTQVIRMVGE+ E V A VGGGS NKMPTLEEYGTNLTKLAEEGKLDPVV
Sbjct: 166 NLGADPSNIRTQVIRMVGENNE-VTANVGGGSGTNKMPTLEEYGTNLTKLAEEGKLDPVV 224
Query: 201 GRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLD 260
GR PQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASG V +T EGKKVITLD
Sbjct: 225 GRHPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGVVRETSEGKKVITLD 284
Query: 261 MGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPS 320
MGLL AGTKYRGEFEER+KKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKP+
Sbjct: 285 MGLLAAGTKYRGEFEERVKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPA 344
Query: 321 LARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHK 380
LARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEP+VDETIQILKGLRERYEIHHK
Sbjct: 345 LARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPTVDETIQILKGLRERYEIHHK 404
Query: 381 LRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQI 440
LRYTDE+LV+AAQLSYQYISDRFLPD+AIDL+DEAGSRVRLRHAQ+PEEARELEKELRQI
Sbjct: 405 LRYTDESLVAAAQLSYQYISDRFLPDRAIDLMDEAGSRVRLRHAQVPEEARELEKELRQI 464
Query: 441 TKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQ 500
TKE NEAVRGQDFEKAG LRDRE++L+A++SA+ KGKEMSKAE+E GD GP+VTE DIQ
Sbjct: 465 TKE-NEAVRGQDFEKAGTLRDREIELRAEVSAIQAKGKEMSKAESETGDEGPMVTESDIQ 523
Query: 501 HIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRP 560
HIVS+WTGI VEKVSTDESD LLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRP
Sbjct: 524 HIVSSWTGILVEKVSTDESDLLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRP 583
Query: 561 IASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYT 620
IASFIF GPTGVGKSELAKALAAYYFG EEAMIRLDMSEFMERHTVSKLIGSPPGYVGYT
Sbjct: 584 IASFIFFGPTGVGKSELAKALAAYYFGCEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYT 643
Query: 621 EGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMT 680
E QLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLT+SKGRTVDFKNTLLIMT
Sbjct: 644 EPPQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTNSKGRTVDFKNTLLIMT 703
Query: 681 SNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQL 740
SNVGSSVIEKGGRRIGFDLDY EKDSSYNRIKSLVT+ELKQYFRPEFLNRLDEMI+FRQL
Sbjct: 704 SNVGSSVIEKGGRRIGFDLDY-EKDSSYNRIKSLVTQELKQYFRPEFLNRLDEMILFRQL 762
Query: 741 TKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLE 800
TKLEVKEIADI+L+E+F+RLK K++ELQVTERF+ERVV+EGYNPSYGARPLRRAIMRLLE
Sbjct: 763 TKLEVKEIADILLQELFERLKKKEVELQVTERFKERVVDEGYNPSYGARPLRRAIMRLLE 822
Query: 801 DSMAEKMLAREIKEGDSVIVDVDSDGNVTVLNGSSGAP----ESLADPLPV 847
DSM EKMLAREIKEGDSVIVDVDS+G VTVLNG SG P E D LPV
Sbjct: 823 DSMEEKMLAREIKEGDSVIVDVDSEGKVTVLNGGSGTPTTSLEEQEDSLPV 873
Score = 107 bits (266), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 56/107 (52%), Positives = 77/107 (71%), Gaps = 6/107 (5%)
Query: 55 SNALDTF---TCDFHSTVAVSLSSRRGKSGRAGGFVVKAMFERFTEKAIKVIMLAQEEAR 111
+N LDT F V +++ +GK R VVKAMFERFTEKAIKVIMLAQEEAR
Sbjct: 5 NNVLDTLGRSRQSFGGKVRQAMNVPKGKGSRG---VVKAMFERFTEKAIKVIMLAQEEAR 61
Query: 112 RLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRTQVIRMVG 158
RLGHN++G+E +LLGL+ EG G+AA+VL+++G + + R +V +++G
Sbjct: 62 RLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIG 108
>sp|Q9SXJ7|CLPC2_ARATH Chaperone protein ClpC2, chloroplastic OS=Arabidopsis thaliana
GN=CLPC2 PE=2 SV=1
Length = 952
Score = 1318 bits (3412), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 671/774 (86%), Positives = 725/774 (93%), Gaps = 8/774 (1%)
Query: 81 GRAGGFVVKAMFERFTEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLE 140
GR GFV A+ FT +A +V+ L+ EEAR+LGHNYIGSEHLLLGLLREGEGVAARVLE
Sbjct: 181 GRGSGFV--AVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLE 238
Query: 141 NLGADPSNIRTQVIRMVGESTEAVGAGVGGGSSGNKMPTLEEYGTNLTKLAEEGKLDPVV 200
NLGADPSNIRTQVIRMVGE+ E + GG S +KMPTLEEYGTNLTKLAEEGKLDPVV
Sbjct: 239 NLGADPSNIRTQVIRMVGENNEVTASVGGGSSGNSKMPTLEEYGTNLTKLAEEGKLDPVV 298
Query: 201 GRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLD 260
GRQPQIERVVQIL RRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVP+TIEGK VITLD
Sbjct: 299 GRQPQIERVVQILARRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPETIEGKTVITLD 358
Query: 261 MGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPS 320
MGLLVAGTKYRGEFEERLKKLMEEI+QSDEIILFIDEVHTLIGAGAAEGAIDAANILKP+
Sbjct: 359 MGLLVAGTKYRGEFEERLKKLMEEIRQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPA 418
Query: 321 LARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHK 380
LARGELQCIGATT+DEYRKHIEKDPALERRFQPVKVPEP+V+E IQIL+GLRERYEIHHK
Sbjct: 419 LARGELQCIGATTIDEYRKHIEKDPALERRFQPVKVPEPTVEEAIQILQGLRERYEIHHK 478
Query: 381 LRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQI 440
LRYTDEALV+AAQLS+QYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEK+LRQI
Sbjct: 479 LRYTDEALVAAAQLSHQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKQLRQI 538
Query: 441 TKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQ 500
TKEKNEAVR QDFE AG RDRE++LKA+I+ ++ +GKE++KAE EA + GP VTE DIQ
Sbjct: 539 TKEKNEAVRSQDFEMAGSHRDREIELKAEIANVLSRGKEVAKAENEAEEGGPTVTESDIQ 598
Query: 501 HIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRP 560
HIV+ WTGIPVEKVS+DES RLL+ME+TLH RVIGQDEAVKAISRAIRRARVGLKNPNRP
Sbjct: 599 HIVATWTGIPVEKVSSDESSRLLQMEQTLHTRVIGQDEAVKAISRAIRRARVGLKNPNRP 658
Query: 561 IASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYT 620
IASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYT
Sbjct: 659 IASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYT 718
Query: 621 EGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMT 680
EGGQLTEAVRRRPYT+VLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMT
Sbjct: 719 EGGQLTEAVRRRPYTLVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMT 778
Query: 681 SNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQL 740
SNVGSSVIEKGGRRIGFDLD+DEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQL
Sbjct: 779 SNVGSSVIEKGGRRIGFDLDHDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQL 838
Query: 741 TKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLE 800
TKLEVKEIADIMLKEV RL+ K+IELQVTERF+ERVV+EG++PSYGARPLRRAIMRLLE
Sbjct: 839 TKLEVKEIADIMLKEVVARLEVKEIELQVTERFKERVVDEGFDPSYGARPLRRAIMRLLE 898
Query: 801 DSMAEKMLAREIKEGDSVIVDVDSDGNVTVLNGSSG------APESLADPLPVV 848
DSMAEKML+R+IKEGDSVIVDVD++G+V VL+G++G A E++ DP+P++
Sbjct: 899 DSMAEKMLSRDIKEGDSVIVDVDAEGSVVVLSGTTGRVGGFAAEEAMEDPIPIL 952
Score = 122 bits (306), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 69/141 (48%), Positives = 94/141 (66%), Gaps = 6/141 (4%)
Query: 21 FQSQNAGKSRRNVKMMSYMQPSASRISSFSGLRRSNALDTF---TCDFHSTVAVSLSSRR 77
Q+ + R VKMMS +Q I SFSGLR +ALD + F ++ SS R
Sbjct: 44 IQATEYREPRGRVKMMSSLQAPLLTIQSFSGLRAPSALDYLGRPSPGFLVKYKLAKSSGR 103
Query: 78 GKSGRAGGFVVKAMFERFTEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAAR 137
K+ R V KAMFERFTEKAIKVIML+QEEARRLGHN++G+E +LLGL+ EG G+AA+
Sbjct: 104 EKASRC---VPKAMFERFTEKAIKVIMLSQEEARRLGHNFVGTEQILLGLIGEGTGIAAK 160
Query: 138 VLENLGADPSNIRTQVIRMVG 158
VL+++G + + R +V +++G
Sbjct: 161 VLKSMGINLKDSRVEVEKIIG 181
>sp|Q53LY0|CLPC3_ORYSJ Chaperone protein ClpC3, chloroplastic OS=Oryza sativa subsp.
japonica GN=CLPC3 PE=2 SV=1
Length = 932
Score = 1158 bits (2995), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 581/769 (75%), Positives = 668/769 (86%), Gaps = 8/769 (1%)
Query: 80 SGRAGGFVVKAMFERFTEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAARVL 139
+GR G V M +FT A V+ +QEEA +LGHNY+GSEHLLLGLLRE G A VL
Sbjct: 164 AGRGPGMV--PMEIKFTPAAKNVLQASQEEAHQLGHNYVGSEHLLLGLLRE-HGAALVVL 220
Query: 140 ENLGADPSNIRTQVIRMVGESTE---AVGAGVGGGSSGNKMPTLEEYGTNLTKLAEEGKL 196
+N ADPSNIR++VIRM+ +++E V A VGGGSS K+PTL EYGTNLTKLAEEGKL
Sbjct: 221 KNFQADPSNIRSEVIRMISDTSEDHQPVSAAVGGGSSTTKIPTLLEYGTNLTKLAEEGKL 280
Query: 197 DPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKV 256
DPVVGRQ Q++RVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIA+G+VP+TI+GK V
Sbjct: 281 DPVVGRQNQVDRVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIAAGNVPETIDGKTV 340
Query: 257 ITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANI 316
ITLDMGLLVAGTKYRGEFEERLKKLM+E+KQ+ EIILF+DEVHTL+GAGAAEGAIDAANI
Sbjct: 341 ITLDMGLLVAGTKYRGEFEERLKKLMDEVKQNGEIILFLDEVHTLVGAGAAEGAIDAANI 400
Query: 317 LKPSLARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYE 376
LKP+LARGELQCIGATT+DEYRKHIEKDPALERRFQPVKVPEP+VDETI ILKGLRERYE
Sbjct: 401 LKPALARGELQCIGATTIDEYRKHIEKDPALERRFQPVKVPEPTVDETIGILKGLRERYE 460
Query: 377 IHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKE 436
IHHK++YTDE+L++AA+LSYQYISDRFLPDKAIDL+DEAGS VRLR+AQLP+EA+ELEK+
Sbjct: 461 IHHKVQYTDESLIAAARLSYQYISDRFLPDKAIDLVDEAGSLVRLRNAQLPDEAKELEKK 520
Query: 437 LRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDV-GPVVT 495
L++I EK+EA+R QDFEKAG LR E++LK++I +LVDK KEMSKA ++G+ GP VT
Sbjct: 521 LKKIMAEKSEAIRSQDFEKAGALRGEEVELKSEIMSLVDKSKEMSKAAVDSGESPGPTVT 580
Query: 496 EVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLK 555
E D+QHIVS+WTG+PVEKV+ DES RLL ME +LH+R++GQDEAV AISRAIRRARVGL+
Sbjct: 581 EADVQHIVSSWTGVPVEKVTVDESSRLLAMESSLHRRIVGQDEAVTAISRAIRRARVGLR 640
Query: 556 NPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPG 615
+P RPIASFIF+GPTGVGKSELAKALAAYY+GS EAM+RLDMSEFME+HTV+KL+GSPPG
Sbjct: 641 DPRRPIASFIFAGPTGVGKSELAKALAAYYYGSPEAMVRLDMSEFMEKHTVAKLVGSPPG 700
Query: 616 YVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNT 675
YVGY EGGQLTEA+RRRPY VVLFDE+EKAHPDVFNMMLQIL+DGRLTDSKGRTVDFKN+
Sbjct: 701 YVGYAEGGQLTEAIRRRPYAVVLFDEVEKAHPDVFNMMLQILDDGRLTDSKGRTVDFKNS 760
Query: 676 LLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMI 735
L+IMTSNVGS VIEKGGR++ D Y IK++V EE+K+YFRPEFLNRLDEMI
Sbjct: 761 LIIMTSNVGSGVIEKGGRQL-GFAGDGSGDGGYGVIKNMVEEEMKRYFRPEFLNRLDEMI 819
Query: 736 VFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAI 795
VFRQLTKLEVKEIA IML EV R+ K I LQVTERF+E VVE+G++PSYGARPLRRAI
Sbjct: 820 VFRQLTKLEVKEIAGIMLAEVTGRIGGKGIGLQVTERFKELVVEQGFDPSYGARPLRRAI 879
Query: 796 MRLLEDSMAEKMLAREIKEGDSVIVDVDSDGNVTVLNGSSGAPESLADP 844
MRLLED++ +KMLA EI GDSVIVD D DGNV V+ S L P
Sbjct: 880 MRLLEDTLTDKMLAGEICAGDSVIVDADGDGNVVVVGRRSAGLPDLKSP 928
Score = 75.1 bits (183), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/67 (55%), Positives = 47/67 (70%)
Query: 92 FERFTEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRT 151
F+ FT+KAIK IM+AQEEARRLGH+ GSE LLLG++ EG G+ A+VL G R
Sbjct: 99 FDMFTDKAIKAIMMAQEEARRLGHHAAGSEQLLLGVIGEGTGIGAKVLRGAGLSLKAARA 158
Query: 152 QVIRMVG 158
+V +M G
Sbjct: 159 EVEKMAG 165
>sp|Q1XDF4|CLPC_PORYE ATP-dependent Clp protease ATP-binding subunit clpA homolog
OS=Porphyra yezoensis GN=clpC PE=3 SV=1
Length = 821
Score = 1098 bits (2839), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 544/753 (72%), Positives = 646/753 (85%), Gaps = 6/753 (0%)
Query: 81 GRAGGFVVKAMFERFTEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLE 140
GR GFV A+ FT +A +V+ L+ EEAR+LGHNYIG+EHLL+GL+REGEGVAARVLE
Sbjct: 68 GRGSGFV--AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEHLLMGLVREGEGVAARVLE 125
Query: 141 NLGADPSNIRTQVIRMVGESTEAVGAGVGGGSSGNKMPTLEEYGTNLTKLAEEGKLDPVV 200
NL D S+IR +VI+M+GE+ EA +G + +K PTLEE+G+NLT++A EG LDPVV
Sbjct: 126 NLAVDVSSIRAEVIQMLGENAEANVSGSNTTQARSKTPTLEEFGSNLTQMAMEGGLDPVV 185
Query: 201 GRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLD 260
GRQ +IERV+QILGRRTKNNP LIGEPGVGKTAIAEGLAQRIA+ DVP +E K VITLD
Sbjct: 186 GRQKEIERVIQILGRRTKNNPVLIGEPGVGKTAIAEGLAQRIANRDVPSILEDKLVITLD 245
Query: 261 MGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPS 320
+GLLVAGTKYRGEFEERLK++M+EIK +D +IL IDEVHTLIGAGAAEGAIDAAN+LKP+
Sbjct: 246 VGLLVAGTKYRGEFEERLKRIMDEIKSADNVILVIDEVHTLIGAGAAEGAIDAANLLKPA 305
Query: 321 LARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHK 380
LARGELQCIGATTL+EYRKHIEKDPALERRFQPV V EPSV+ETI+IL GLR+RYE HH+
Sbjct: 306 LARGELQCIGATTLEEYRKHIEKDPALERRFQPVVVGEPSVEETIEILFGLRDRYEKHHQ 365
Query: 381 LRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQI 440
L +D AL +AA+ + QYISDRFLPDKAIDLIDEAGSRVRL ++QLP AREL+KELR +
Sbjct: 366 LTMSDGALAAAAKYANQYISDRFLPDKAIDLIDEAGSRVRLLNSQLPPAARELDKELRAV 425
Query: 441 TKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQ 500
K K+EA+R Q +E A + R REM++KAQI+A+ K E PVVTE DI
Sbjct: 426 LKTKDEAIRAQKYETAEQYRAREMEIKAQIAAIAQSKKNEPDLNLE----DPVVTEDDIA 481
Query: 501 HIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRP 560
IV+AWTGIPV K++ ES++L+ MEETLH R+IGQDEAV A+SRAIRRARVGLKNPNRP
Sbjct: 482 EIVAAWTGIPVTKLTKSESEKLMHMEETLHGRIIGQDEAVVAVSRAIRRARVGLKNPNRP 541
Query: 561 IASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYT 620
IASFIFSGPTGVGK+EL KALA+Y+FGSE +MIRLDMSE+MERHTVSKLIGSPPGYVGY+
Sbjct: 542 IASFIFSGPTGVGKTELTKALASYFFGSEASMIRLDMSEYMERHTVSKLIGSPPGYVGYS 601
Query: 621 EGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMT 680
EGG LTEAVR++PYTV+LFDEIEKAHPD+FN++LQILEDGRLTD+KGRT+DFKNTLLIMT
Sbjct: 602 EGGYLTEAVRKKPYTVILFDEIEKAHPDIFNLLLQILEDGRLTDAKGRTIDFKNTLLIMT 661
Query: 681 SNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQL 740
SN+GS VIEKGG +GF+L D+ +S Y R++SLV EELKQYFRPEFLNRLDE+IVFRQL
Sbjct: 662 SNIGSKVIEKGGGSLGFELSEDQTESQYTRVRSLVNEELKQYFRPEFLNRLDEIIVFRQL 721
Query: 741 TKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLE 800
TK EV+EIA++ML EVF R+K +DI+L VTERF++R+VEEGYNPSYGARPLRRA+MRLLE
Sbjct: 722 TKDEVREIAELMLNEVFARIKQQDIQLNVTERFKQRLVEEGYNPSYGARPLRRAVMRLLE 781
Query: 801 DSMAEKMLAREIKEGDSVIVDVDSDGNVTVLNG 833
DS+AE++L+ +IK GDS +VDV ++G VTVL G
Sbjct: 782 DSLAEEVLSGKIKAGDSAVVDVTNEGEVTVLLG 814
Score = 92.8 bits (229), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 42/68 (61%), Positives = 58/68 (85%)
Query: 91 MFERFTEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIR 150
MFERFTEKAIKVIMLAQEEARRLGHN++G+E +LLGL+ EG G+AA+VL+++ + + R
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLVGEGTGIAAQVLKSMNVNLKDAR 60
Query: 151 TQVIRMVG 158
+V +++G
Sbjct: 61 VEVEKIIG 68
>sp|P51332|CLPC_PORPU ATP-dependent Clp protease ATP-binding subunit clpA homolog
OS=Porphyra purpurea GN=clpC PE=3 SV=1
Length = 821
Score = 1094 bits (2829), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 543/753 (72%), Positives = 645/753 (85%), Gaps = 6/753 (0%)
Query: 81 GRAGGFVVKAMFERFTEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLE 140
GR GFV A+ FT +A +V+ L+ EEAR+LGHNYIG+EHLL+GL+REGEGVAARVLE
Sbjct: 68 GRGSGFV--AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEHLLMGLVREGEGVAARVLE 125
Query: 141 NLGADPSNIRTQVIRMVGESTEAVGAGVGGGSSGNKMPTLEEYGTNLTKLAEEGKLDPVV 200
NL D S+IR +VI+M+GE+ EA +G + +K PTLEE+G+NLT++A EG LDPVV
Sbjct: 126 NLAVDVSSIRAEVIQMLGENAEANVSGSNATQARSKTPTLEEFGSNLTQMAIEGGLDPVV 185
Query: 201 GRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLD 260
GRQ +IERV+QILGRRTKNNP LIGEPGVGKTAIAEGLAQRIA+ DVP +E K VITLD
Sbjct: 186 GRQKEIERVIQILGRRTKNNPVLIGEPGVGKTAIAEGLAQRIANRDVPSILEDKLVITLD 245
Query: 261 MGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPS 320
+GLLVAGTKYRGEFEERLK++M+EIK +D +IL IDEVHTLIGAGAAEGAIDAAN+LKP+
Sbjct: 246 VGLLVAGTKYRGEFEERLKRIMDEIKSADNVILVIDEVHTLIGAGAAEGAIDAANLLKPA 305
Query: 321 LARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHK 380
LARGELQCIGATTL+EYRKHIEKDPALERRF PV V EPSV+ETI+IL GLR+RYE HH+
Sbjct: 306 LARGELQCIGATTLEEYRKHIEKDPALERRFHPVVVGEPSVEETIEILFGLRDRYEKHHQ 365
Query: 381 LRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQI 440
L +D AL +AA+ + QYISDRFLPDKAIDLIDEAGSRVRL ++QLP AREL+KELR +
Sbjct: 366 LTMSDGALAAAAKYANQYISDRFLPDKAIDLIDEAGSRVRLLNSQLPPAARELDKELRAV 425
Query: 441 TKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQ 500
K K+EA+R Q +E A + R REM++KAQI+A+ K E PVVTE DI
Sbjct: 426 LKTKDEAIRAQKYETAEQYRAREMEIKAQIAAIAQSKKNEPDLNLE----DPVVTEDDIA 481
Query: 501 HIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRP 560
IV+AWTGIPV K++ ES++L++MEETLH R+IGQDEAV A+SRAIRRARVGLKNPNRP
Sbjct: 482 EIVAAWTGIPVTKLTKSESEKLMQMEETLHGRIIGQDEAVIAVSRAIRRARVGLKNPNRP 541
Query: 561 IASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYT 620
IASFIFSGPTGVGK+EL KALA+Y+FGSE +MIRLDMSE+MERHTVSKLIGSPPGYVGY+
Sbjct: 542 IASFIFSGPTGVGKTELTKALASYFFGSEASMIRLDMSEYMERHTVSKLIGSPPGYVGYS 601
Query: 621 EGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMT 680
EGG LTEAVR++PYTV+LFDEIEKAHPD+FN++LQILEDGRLTD+KGRT+DFKNTLLIMT
Sbjct: 602 EGGYLTEAVRKKPYTVILFDEIEKAHPDIFNLLLQILEDGRLTDAKGRTIDFKNTLLIMT 661
Query: 681 SNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQL 740
SN+GS VIEKGG +GF+L D+ +S Y R++SLV EELKQYFRPEFLNRLDE+IVFRQL
Sbjct: 662 SNIGSKVIEKGGGSLGFELSEDQTESQYTRVRSLVNEELKQYFRPEFLNRLDEIIVFRQL 721
Query: 741 TKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLE 800
TK EV+EIA++ML EVF R+K +DI+L VTERF+ER+VEEGYNPSYGARPLRRA+MRLLE
Sbjct: 722 TKDEVREIAELMLNEVFARIKQQDIQLNVTERFKERLVEEGYNPSYGARPLRRAVMRLLE 781
Query: 801 DSMAEKMLAREIKEGDSVIVDVDSDGNVTVLNG 833
DS+AE++L+ +IK GDS +VDV ++G V VL G
Sbjct: 782 DSLAEEVLSGKIKAGDSPVVDVTNEGEVKVLLG 814
Score = 92.8 bits (229), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 42/68 (61%), Positives = 58/68 (85%)
Query: 91 MFERFTEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIR 150
MFERFTEKAIKVIMLAQEEARRLGHN++G+E +LLGL+ EG G+AA+VL+++ + + R
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLVGEGTGIAAQVLKSMNVNLKDAR 60
Query: 151 TQVIRMVG 158
+V +++G
Sbjct: 61 VEVEKIIG 68
>sp|O78410|CLPC_GUITH ATP-dependent Clp protease ATP-binding subunit clpA homolog
OS=Guillardia theta GN=clpC PE=3 SV=1
Length = 819
Score = 1090 bits (2818), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 540/736 (73%), Positives = 632/736 (85%), Gaps = 13/736 (1%)
Query: 81 GRAGGFVVKAMFERFTEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLE 140
GR GFV A+ FT +A +V+ L+ EEAR+LGHNYIG+EHLLLGL+REGEGVAARVLE
Sbjct: 68 GRGSGFV--AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEHLLLGLIREGEGVAARVLE 125
Query: 141 NLGADPSNIRTQVIRMVGESTEAVGAGVGGGSSGNKMPTLEEYGTNLTKLAEEGKLDPVV 200
NL D + +RTQVIR++G++ E G + K PTLEE+G+NLT+ A EGKLDPV+
Sbjct: 126 NLALDLTKVRTQVIRLLGDTAEVSATN---GQTKGKTPTLEEFGSNLTQKAAEGKLDPVI 182
Query: 201 GRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLD 260
GRQ +IERV+QILGRRTKNNP LIGEPGVGKTAIAEGLAQRI + DVPD +E K+V+TLD
Sbjct: 183 GRQKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRINNRDVPDILEDKRVVTLD 242
Query: 261 MGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPS 320
+GLLVAGTKYRGEFEERLKK+++EI+ ++ +IL IDEVHTLIGAGAAEGAIDAANILKP+
Sbjct: 243 IGLLVAGTKYRGEFEERLKKIIDEIRVANNVILVIDEVHTLIGAGAAEGAIDAANILKPA 302
Query: 321 LARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHK 380
LARGE+QCIGATTL+EYRKHIEKD ALERRFQPV V EPSV+ETI+IL GLR+RYE HHK
Sbjct: 303 LARGEMQCIGATTLEEYRKHIEKDSALERRFQPVMVGEPSVEETIEILYGLRDRYEKHHK 362
Query: 381 LRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQI 440
L +DEAL +AA+ + QYI+DRFLPDKAIDLIDEAGSRVRL ++QLP AREL+KELR+I
Sbjct: 363 LVISDEALSAAAKFADQYIADRFLPDKAIDLIDEAGSRVRLMNSQLPPAARELDKELREI 422
Query: 441 TKEKNEAVRGQDFEKAGELRDREMDLKAQISALVD--KGKEMSKAETEAGDVGPVVTEVD 498
K+K+EAVR QDFE AG+LRDREM++KAQI+A+ KG E + E VVTE D
Sbjct: 423 LKQKDEAVRSQDFETAGQLRDREMEIKAQIAAIAHSKKGDEENTKEV------SVVTEED 476
Query: 499 IQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPN 558
I IV+AWTGIPV K++ ES++LL+MEETLH R+IGQDEAV A+S+AIRRARVGLKNPN
Sbjct: 477 IAQIVAAWTGIPVNKMTRSESEKLLQMEETLHGRIIGQDEAVVAVSKAIRRARVGLKNPN 536
Query: 559 RPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVG 618
RPIASFIFSGPTGVGK+EL KALA+Y+FGSEEAM+RLDMSE+MERHTVSKLIGSPPGYVG
Sbjct: 537 RPIASFIFSGPTGVGKTELTKALASYFFGSEEAMVRLDMSEYMERHTVSKLIGSPPGYVG 596
Query: 619 YTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLI 678
Y EGGQLTE+VRRRPYTVVLFDEIEK HPDVFN++LQILEDGRLTDSKGRTVDFKNTLLI
Sbjct: 597 YNEGGQLTESVRRRPYTVVLFDEIEKGHPDVFNLLLQILEDGRLTDSKGRTVDFKNTLLI 656
Query: 679 MTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFR 738
+TSNVGS VIEKGG +GFDL D+ +S Y RIK+LV EELKQYFRPEFLNRLDE+IVFR
Sbjct: 657 LTSNVGSKVIEKGGGGLGFDLSEDQTESQYGRIKALVNEELKQYFRPEFLNRLDEIIVFR 716
Query: 739 QLTKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRL 798
QLTK EV EIA+IMLKEVF R+ K I+L+VT RF+ ++ EGYNP YGARPLRRA+MRL
Sbjct: 717 QLTKDEVGEIAEIMLKEVFTRISEKGIQLEVTARFKTHLINEGYNPIYGARPLRRAVMRL 776
Query: 799 LEDSMAEKMLAREIKE 814
LED+++E+ LA +IKE
Sbjct: 777 LEDTLSEEFLAEKIKE 792
Score = 95.9 bits (237), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/68 (63%), Positives = 59/68 (86%)
Query: 91 MFERFTEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIR 150
MFERFTEKAIKVIMLAQEEARRLGHN++G+E +LLGL+ EG G+AA+VL+++G + + R
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGVNLKDAR 60
Query: 151 TQVIRMVG 158
+V +++G
Sbjct: 61 VEVEKIIG 68
>sp|Q9TM05|CLPC_CYACA ATP-dependent Clp protease ATP-binding subunit clpA homolog
OS=Cyanidium caldarium GN=clpC PE=3 SV=1
Length = 854
Score = 1086 bits (2808), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 530/755 (70%), Positives = 647/755 (85%), Gaps = 7/755 (0%)
Query: 81 GRAGGFVVKAMFERFTEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLE 140
GR GFV A+ FT +A K++ LA EE+R L HNY+G+EHLLLGL++EGEGVAARVLE
Sbjct: 99 GRGSGFV--AIEIPFTPRAKKILELAIEESRILTHNYVGTEHLLLGLIKEGEGVAARVLE 156
Query: 141 NLGADPSNIRTQVIRMVGESTEAVGAGVGGGSSGNKMPTLEEYGTNLTKLAEEGKLDPVV 200
NLG D +R+ +IRM+GE++E VG S +K+PTLEE+GTNLT++A EGKLDPVV
Sbjct: 157 NLGVDLPKLRSNIIRMIGETSEV---SVGATSGRSKVPTLEEFGTNLTQMAVEGKLDPVV 213
Query: 201 GRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLD 260
GR +IERVVQILGRRTKNNP LIGEPGVGKTAIAEGLAQRI + +VPDT+E KKVITLD
Sbjct: 214 GRAKEIERVVQILGRRTKNNPVLIGEPGVGKTAIAEGLAQRIINNEVPDTLEDKKVITLD 273
Query: 261 MGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPS 320
+ LLVAGTKYRGEFEERLKK+M+EI+ +D +IL IDEVHTLIGAGAAEGAIDAANILKP+
Sbjct: 274 VSLLVAGTKYRGEFEERLKKIMDEIRMADNVILVIDEVHTLIGAGAAEGAIDAANILKPA 333
Query: 321 LARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHK 380
LARGELQCIGATTL+EYRKHIEKD ALERRFQPV V EP+V+ETI+IL+GLR+RYE HH+
Sbjct: 334 LARGELQCIGATTLEEYRKHIEKDAALERRFQPVMVEEPTVEETIEILRGLRDRYEAHHR 393
Query: 381 LRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQI 440
L+ +D A+V+AA+LS QYI+DRFLPDKAIDL+DEA SRVRL + +LP A L++ELR I
Sbjct: 394 LKISDSAIVAAAKLSDQYIADRFLPDKAIDLVDEASSRVRLMNYKLPPSAEYLDEELRHI 453
Query: 441 TKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQ 500
K KNE +R DFE+A + R+RE+++K Q++AL+ KE E E P+V E DI
Sbjct: 454 QKIKNELIRSGDFEEASQFREREIEVKVQMAALMKAKKE--AIEEELALNPPIVNEDDIA 511
Query: 501 HIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRP 560
+IVS+WTGIPV K++ ES++LL MEETLH R++GQ+EAV A+S+AIRRARVGLKNPNRP
Sbjct: 512 NIVSSWTGIPVSKLTKSESEKLLHMEETLHSRIVGQNEAVIAVSKAIRRARVGLKNPNRP 571
Query: 561 IASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYT 620
IASFIFSGPTGVGK+EL KA+A+Y+FGSEEAM+RLDMSE+MERHTVSKLIGSPPGYVGY
Sbjct: 572 IASFIFSGPTGVGKTELTKAMASYFFGSEEAMVRLDMSEYMERHTVSKLIGSPPGYVGYN 631
Query: 621 EGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMT 680
EGGQLTEAVR+RPYTVVLFDEIEKAHPDVFN++LQILEDGRLTDSKGRT+DFKNTLLIMT
Sbjct: 632 EGGQLTEAVRKRPYTVVLFDEIEKAHPDVFNLLLQILEDGRLTDSKGRTIDFKNTLLIMT 691
Query: 681 SNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQL 740
SN+GS VIEK G +GF+L+ + ++ Y+R+++LV EELKQYFRPEFLNR+DE+IVFRQL
Sbjct: 692 SNIGSKVIEKKGGGLGFELEENIEELQYSRMRNLVNEELKQYFRPEFLNRVDEIIVFRQL 751
Query: 741 TKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLE 800
TK EV++IA IML+E+F+R+K + I LQVTERF+ ++EEGYNPSYGARPLRRA++RLLE
Sbjct: 752 TKDEVRDIAHIMLREIFERVKQQGISLQVTERFKNLLIEEGYNPSYGARPLRRALVRLLE 811
Query: 801 DSMAEKMLAREIKEGDSVIVDVDSDGNVTVLNGSS 835
DS+AE++L+ +IKEGD+ ++DVD + V +L G+S
Sbjct: 812 DSLAEEVLSGKIKEGDNAMIDVDENKQVKILLGNS 846
Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/70 (60%), Positives = 58/70 (82%)
Query: 89 KAMFERFTEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSN 148
K MFERFTEKA+KVIMLAQEEARRLGHN++G+E +LLG+L EG G+AA+ L+++G +
Sbjct: 30 KNMFERFTEKAVKVIMLAQEEARRLGHNFVGTEQILLGILGEGTGLAAKALKSMGITLKD 89
Query: 149 IRTQVIRMVG 158
R +V +++G
Sbjct: 90 ARIEVEKIIG 99
>sp|Q53N47|CLPC4_ORYSJ Chaperone protein ClpC4, chloroplastic OS=Oryza sativa subsp.
japonica GN=CPLC4 PE=3 SV=1
Length = 918
Score = 944 bits (2439), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 473/764 (61%), Positives = 606/764 (79%), Gaps = 35/764 (4%)
Query: 73 LSSRRGKSGRAGGFVVKAMFERFTEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLREGE 132
+S + K + FV +A+ + F+ + + I +A +EA+ + H IGS ++LL L+ +
Sbjct: 176 VSQKTTKVPKQPRFVARAI-DNFSREVMNAIAVAHDEAQYIAHLTIGSTNILLSLI--SQ 232
Query: 133 GVAARVLENLGADPSNIRTQVIRMVGESTEAVGAGVGGGSSGNKMPTLEEYGTNLTKLAE 192
+ +LE + + ++ + A V + G K+ TL EYGTNLTKLAE
Sbjct: 233 YICIFLLEII--------------LNKAYKMFRAAVRRATRGAKLATLMEYGTNLTKLAE 278
Query: 193 EGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIE 252
EGKLDPVVGRQ QI+ VVQIL RRTKNNPCLIGEPGVGKTAIAEGLAQ IA+GDVP+TI+
Sbjct: 279 EGKLDPVVGRQKQIDHVVQILSRRTKNNPCLIGEPGVGKTAIAEGLAQLIATGDVPETIQ 338
Query: 253 GKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAID 312
K VI+LDMGLL+AGTKYRGE EERLK ++EEIKQ+ EIILF+DEVHTL+ AG+AEGAID
Sbjct: 339 QKTVISLDMGLLLAGTKYRGELEERLKNILEEIKQNGEIILFLDEVHTLVTAGSAEGAID 398
Query: 313 AANILKPSLARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLR 372
AANI KP+LARGELQCIGATT++EYRKHIEKD ALERRFQPVK+PE +VDET+ ILKGLR
Sbjct: 399 AANIFKPALARGELQCIGATTINEYRKHIEKDAALERRFQPVKIPESTVDETVGILKGLR 458
Query: 373 ERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQL--PEEA 430
ERY+ HHK++YTDEALV+AA+LS+++I DRFLPDKAIDL+DEAGS VRLR+AQ ++
Sbjct: 459 ERYQGHHKVQYTDEALVAAAELSHKHIRDRFLPDKAIDLMDEAGSIVRLRNAQCKPSKKV 518
Query: 431 RELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDV 490
+LE EL++ KEKN+A+ Q+F +A +LRD E+ L+ ISAL DK +M + + A
Sbjct: 519 NDLEAELKKTLKEKNDAISIQNFRRAKQLRDHELQLRTNISALTDKKTQMMEPDAIA--- 575
Query: 491 GPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRA 550
PVVTE D++H +S WTG+P+ KVS DES +LLK+EE LH+RV+GQ EAV A+SRAIRRA
Sbjct: 576 MPVVTEDDVRHAISRWTGVPLHKVSMDESRKLLKLEEALHRRVVGQGEAVAAVSRAIRRA 635
Query: 551 RVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEE----AMIRLDMSEFMERHTV 606
R+GLK+P RP+AS +F+GPTGVGKSELAKALAAYY+GS E AM+RLDMSE+ME+H V
Sbjct: 636 RLGLKHPGRPVASLVFAGPTGVGKSELAKALAAYYYGSSESEEAAMVRLDMSEYMEKHAV 695
Query: 607 SKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSK 666
++L+GSPPGYV + EGGQLTEAVRRRP+ VVL DE+EKAH DVF+++LQ+L+DGRLTD K
Sbjct: 696 ARLVGSPPGYVWHGEGGQLTEAVRRRPHAVVLLDEVEKAHRDVFDLLLQVLDDGRLTDGK 755
Query: 667 GRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPE 726
GRTVDFKNTL++MT+N+GSS+I + + ++ RIK+ VT+E+K++FRPE
Sbjct: 756 GRTVDFKNTLIVMTTNIGSSLIVN---------NGGDGAAAAGRIKNTVTDEMKRHFRPE 806
Query: 727 FLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSY 786
FLNRLDE+I+F+ LT+LEV +IA IML+E R++ K I+L+VT++FRE VVEEG++PSY
Sbjct: 807 FLNRLDEVIMFQPLTELEVGKIAGIMLEEFAGRVREKGIKLKVTDKFRELVVEEGFDPSY 866
Query: 787 GARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDVDSDGNVTV 830
GARPLRRA++RLLED++AEKMLA E++EGDSVIVD DS GN V
Sbjct: 867 GARPLRRAVVRLLEDTLAEKMLAGEVREGDSVIVDADSAGNAVV 910
>sp|Q8EU05|CLPB_OCEIH Chaperone protein ClpB OS=Oceanobacillus iheyensis (strain DSM
14371 / JCM 11309 / KCTC 3954 / HTE831) GN=clpB PE=3
SV=1
Length = 809
Score = 911 bits (2355), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 445/738 (60%), Positives = 577/738 (78%), Gaps = 10/738 (1%)
Query: 95 FTEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRTQVI 154
+T +A KV+ L+Q+EAR+LGH+Y+G+EH+LLGL+REGEGVAARVL NLG + R QV+
Sbjct: 80 YTPRAKKVVELSQDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVL 139
Query: 155 RMVGESTEAVG-AGVGGGSSGNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQIL 213
+++G + G G G S PTL+ +LT A+EGK+DPV+GR +IERV+Q+L
Sbjct: 140 QLLGSNESQAGRQGRSGQQSNASTPTLDSLARDLTVSAKEGKIDPVIGRSKEIERVIQVL 199
Query: 214 GRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGE 273
RRTKNNP LIGEPGVGKTA+AEGLAQ+I +VP+T+ K+V+TLDMG +VAGTKYRGE
Sbjct: 200 SRRTKNNPVLIGEPGVGKTAVAEGLAQQIIDNEVPETLRDKRVMTLDMGTVVAGTKYRGE 259
Query: 274 FEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATT 333
FE+RLKK+MEEI+Q+ IILFIDE+HTLIGAG AEGAIDA+NILKPSLARGELQCIGATT
Sbjct: 260 FEDRLKKVMEEIRQAGNIILFIDELHTLIGAGGAEGAIDASNILKPSLARGELQCIGATT 319
Query: 334 LDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQ 393
LDEYRK+IEKD ALERRFQP++V EP+++ETIQIL GLR+RYE HH++ TDEA+ +AA
Sbjct: 320 LDEYRKYIEKDAALERRFQPIQVDEPTLEETIQILNGLRDRYEAHHRVTITDEAIEAAAS 379
Query: 394 LSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDF 453
LS +YI+DRFLPDKAIDLIDEAGS+VRLR +P +ELE++L ++ KEK+ AV+ Q+F
Sbjct: 380 LSDRYITDRFLPDKAIDLIDEAGSKVRLRSYTVPPNLKELEQKLDEVRKEKDAAVQSQEF 439
Query: 454 EKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEK 513
EKA LRD E + ++ ++ KE + G VT DI +VS WTG+PV K
Sbjct: 440 EKAASLRDSEQRFREELETTKNQWKE------KQGQTDSEVTMEDIAAVVSTWTGVPVSK 493
Query: 514 VSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVG 573
++ DE+DRLL ME+ LH RVIGQ EAV A+++AIRRAR GLK+P RPI SFIF GPTGVG
Sbjct: 494 LTKDETDRLLNMEKILHDRVIGQSEAVNAVAKAIRRARAGLKDPKRPIGSFIFLGPTGVG 553
Query: 574 KSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRP 633
K+ELA+ALA F E+AMIR+DMSE+MERH S+L+GSPPGYVGY EGGQLTE VRR+P
Sbjct: 554 KTELARALAEVMFADEDAMIRIDMSEYMERHATSRLVGSPPGYVGYDEGGQLTEKVRRKP 613
Query: 634 YTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGR 693
Y+VVL DE+EKAHP+VFN++LQ+LEDGRLTDSKGR VDF+NT++IMTSNVG+S + K +
Sbjct: 614 YSVVLLDEVEKAHPEVFNILLQVLEDGRLTDSKGRVVDFRNTVIIMTSNVGASEL-KRNK 672
Query: 694 RIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIML 753
+GF LD +EKD Y +KS V EELK+ FRPEFLNR+DE IVF L K +K+I +M+
Sbjct: 673 YVGFALDNEEKD--YKDMKSKVIEELKKAFRPEFLNRIDETIVFHSLEKEHMKDIVTLMV 730
Query: 754 KEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIK 813
+++ RLK +D+ L +T++ E++ EG++P YGARPLRR+I + +ED ++E++L I+
Sbjct: 731 QQLQKRLKEQDLHLSLTDKAIEKIANEGFDPEYGARPLRRSIQKNIEDLLSEELLRGAIE 790
Query: 814 EGDSVIVDVDSDGNVTVL 831
+ V + +++ G VL
Sbjct: 791 KEQQVKIGLNNKGEFIVL 808
Score = 89.0 bits (219), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/68 (60%), Positives = 57/68 (83%)
Query: 91 MFERFTEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIR 150
MF RFTE+A KV+ L+QEEA RLGHN IG+EH+LLGL+REGEG+AA+ L++LG + S I+
Sbjct: 2 MFGRFTERAQKVLALSQEEAVRLGHNNIGTEHILLGLVREGEGIAAKALQSLGLEVSKIQ 61
Query: 151 TQVIRMVG 158
+V +++G
Sbjct: 62 EEVEKLIG 69
>sp|Q49V34|CLPC_STAS1 ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus saprophyticus subsp. saprophyticus
(strain ATCC 15305 / DSM 20229) GN=clpC PE=3 SV=1
Length = 820
Score = 873 bits (2256), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/730 (58%), Positives = 564/730 (77%), Gaps = 11/730 (1%)
Query: 94 RFTEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRTQV 153
+T +A KVI L+ +EAR+L HN++G+EH+LLGL+RE EGVAARV NL + + R QV
Sbjct: 79 HYTPRAKKVIELSMDEARKLHHNFVGTEHILLGLIRENEGVAARVFANLDLNITKARAQV 138
Query: 154 IRMVGESTEAVGAGVGGGSSGNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQIL 213
++ +G S E S N PTL+ +LT +A++G LDPV+GR +I RV+++L
Sbjct: 139 VKALG-SPEMSNKNAQANKSNN-TPTLDSLARDLTVIAKDGTLDPVIGRDKEITRVIEVL 196
Query: 214 GRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGE 273
RRTKNNP LIGEPGVGKTAIAEGLAQ I + +VP+T++GK+V++LDMG +VAGTKYRGE
Sbjct: 197 SRRTKNNPVLIGEPGVGKTAIAEGLAQAIVNNEVPETLKGKRVMSLDMGTVVAGTKYRGE 256
Query: 274 FEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATT 333
FEERLKK+MEEI Q+ +ILFIDE+HTL+GAG AEGAIDA+NILKP+LARGELQCIGATT
Sbjct: 257 FEERLKKVMEEIHQAGNVILFIDELHTLVGAGGAEGAIDASNILKPALARGELQCIGATT 316
Query: 334 LDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQ 393
LDEYRK+IEKD ALERRFQPV+V EP+V++TI+ILKGLR+RYE HH++ +DEALVSAA+
Sbjct: 317 LDEYRKNIEKDAALERRFQPVQVDEPTVEDTIEILKGLRDRYEAHHRINISDEALVSAAK 376
Query: 394 LSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDF 453
LS++Y+SDRFLPDKAIDLIDEA S+VRL+ P +E+E+++ Q+ EK+ AV Q+F
Sbjct: 377 LSHRYVSDRFLPDKAIDLIDEASSKVRLKSHTTPPNLKEIEQQIEQVKNEKDAAVHAQEF 436
Query: 454 EKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEK 513
E A LRD++ L+ Q K T+ GD ++E DI +++ WTGIP+ K
Sbjct: 437 ENAANLRDKQTKLEKQYEEANTNWK-----NTQNGD-NTSLSEEDIGEVIAGWTGIPLTK 490
Query: 514 VSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVG 573
++ ESDRLL +E+TLH RVIGQ +AV +IS+A+RRAR GLK+P RPI SFIF GPTGVG
Sbjct: 491 INETESDRLLNLEDTLHNRVIGQKDAVTSISKAVRRARAGLKDPKRPIGSFIFLGPTGVG 550
Query: 574 KSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRP 633
K+ELA+ALA FG ++AMIR+DMSEFME+H VS+L+G+PPGYVG+ +GGQLTE VRR+P
Sbjct: 551 KTELARALAESMFGEDDAMIRVDMSEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVRRKP 610
Query: 634 YTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGR 693
Y+V+LFDEIEKAHPDVFN++LQ+L+DG LTD+KGR VDF+NT++IMTSNVG+ ++ R
Sbjct: 611 YSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGRRVDFRNTVIIMTSNVGAQELQD-QR 669
Query: 694 RIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIML 753
GF + +D Y I+ + +ELK FRPEFLNR+D++IVF +L+K E+K+I +M+
Sbjct: 670 FAGFGGATEGQD--YESIRKTMMKELKNAFRPEFLNRVDDIIVFHKLSKDELKQIVTMMV 727
Query: 754 KEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIK 813
++ +RL +DI + VTE +E++ EEGY+P YGARPL RAI + +ED+++E +L
Sbjct: 728 NKLTNRLSEQDINISVTEAAKEKIAEEGYDPEYGARPLIRAIQKTVEDNLSELILDGNQI 787
Query: 814 EGDSVIVDVD 823
EG V +D D
Sbjct: 788 EGKEVKIDHD 797
Score = 69.3 bits (168), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 52/76 (68%)
Query: 91 MFERFTEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIR 150
+F R TE+A +V+ AQEEA RL H+ IG+EHLLLGL++E EG+AA+VLE +
Sbjct: 2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKEPEGIAAKVLETFEITEEKVV 61
Query: 151 TQVIRMVGESTEAVGA 166
+V +++G E +GA
Sbjct: 62 EEVEKLIGHGQEQMGA 77
>sp|Q4L3I4|CLPC_STAHJ ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus haemolyticus (strain JCSC1435) GN=clpC
PE=3 SV=1
Length = 824
Score = 873 bits (2255), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/732 (58%), Positives = 563/732 (76%), Gaps = 11/732 (1%)
Query: 94 RFTEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRTQV 153
+T +A KVI L+ +EAR+L HN++G+EH+LLGL+RE EGVAARV NL + + R QV
Sbjct: 79 HYTPRAKKVIELSMDEARKLHHNFVGTEHILLGLIRENEGVAARVFANLDLNITKARAQV 138
Query: 154 IRMVGESTEAVGAGVGGGSSGNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQIL 213
++ +G S E S N PTL+ +LT +A++G LDPVVGR +I RV+++L
Sbjct: 139 VKALG-SPEMSNKNATANKSNN-TPTLDGLARDLTVIAKDGTLDPVVGRDKEITRVIEVL 196
Query: 214 GRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGE 273
RRTKNNP LIGEPGVGKTAIAEGLAQ I + +VP+T++GK+V++LDMG +VAGTKYRGE
Sbjct: 197 SRRTKNNPVLIGEPGVGKTAIAEGLAQAIVNNEVPETLKGKRVMSLDMGTVVAGTKYRGE 256
Query: 274 FEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATT 333
FEERLKK+MEEI Q+ +ILFIDE+HTL+GAG AEGAIDA+NILKP+LARGELQCIGATT
Sbjct: 257 FEERLKKVMEEIHQAGNVILFIDELHTLVGAGGAEGAIDASNILKPALARGELQCIGATT 316
Query: 334 LDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQ 393
LDEYRK+IEKD ALERRFQP++V EP+V++TI ILKGLR+RYE HH++ +DEAL +AA+
Sbjct: 317 LDEYRKNIEKDAALERRFQPIQVDEPTVEDTIAILKGLRDRYEAHHRINISDEALEAAAK 376
Query: 394 LSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDF 453
LS Y+SDRFLPDKAIDLIDEA S+VRL+ P +E+E+E+ ++ EK+ AV Q+F
Sbjct: 377 LSDCYVSDRFLPDKAIDLIDEASSKVRLKSHTTPNNLKEIEQEIEKVKNEKDAAVHAQEF 436
Query: 454 EKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEK 513
E A LRD++ L+ Q ++ K T GD +++ DI +++ WTGIP+ K
Sbjct: 437 ENAANLRDKQTKLEKQYEDAKNEWK------TTQGDQSTSLSKEDIGEVIAGWTGIPLTK 490
Query: 514 VSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVG 573
++ ESDRLL +E+TLH RVIGQ++AV +IS+A+RRAR GLK+P RPI SFIF GPTGVG
Sbjct: 491 INETESDRLLNLEQTLHDRVIGQNDAVTSISKAVRRARAGLKDPKRPIGSFIFLGPTGVG 550
Query: 574 KSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRP 633
K+ELA+ALA FG E+AMIR+DMSEFME+H VS+L+G+PPGYVG+ EGGQLTE VRR+P
Sbjct: 551 KTELARALAESMFGEEDAMIRVDMSEFMEKHAVSRLVGAPPGYVGHDEGGQLTEKVRRKP 610
Query: 634 YTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGR 693
Y+V+LFDEIEKAHPDVFN++LQ+L+DG LTD+KGR VDF+NT++IMTSNVG+ ++ R
Sbjct: 611 YSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGRQVDFRNTVIIMTSNVGAQELQD-QR 669
Query: 694 RIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIML 753
GF + D Y I+ + +ELK FRPEFLNR+D++IVF +L+K E+KEI +M+
Sbjct: 670 FAGFGGGSEGHD--YETIRKTMMKELKNSFRPEFLNRVDDIIVFHKLSKDELKEIVTMMV 727
Query: 754 KEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIK 813
++ RL +DI + VT++ +E++ EEGY+P YGARPL RAI + +ED+++E +L
Sbjct: 728 NKLTQRLSEQDINIVVTDKAKEKIAEEGYDPEYGARPLIRAIQKTVEDNLSELILDGNQI 787
Query: 814 EGDSVIVDVDSD 825
EG V++D D D
Sbjct: 788 EGKEVVIDHDGD 799
Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 51/75 (68%)
Query: 91 MFERFTEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIR 150
+F R TE+A +V+ AQEEA RL H+ IG+EHLLLGL++E EG+AA+VLE+ +
Sbjct: 2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKEPEGIAAKVLESFNITEDKVI 61
Query: 151 TQVIRMVGESTEAVG 165
+V +++G + G
Sbjct: 62 EEVEKLIGHGQDQTG 76
>sp|P37571|CLPC_BACSU Negative regulator of genetic competence ClpC/MecB OS=Bacillus
subtilis (strain 168) GN=clpC PE=1 SV=1
Length = 810
Score = 871 bits (2251), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 436/736 (59%), Positives = 574/736 (77%), Gaps = 12/736 (1%)
Query: 95 FTEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRTQVI 154
+T +A KVI L+ +EAR+LGH+Y+G+EH+LLGL+REGEGVAARVL NLG + R QV+
Sbjct: 80 YTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVL 139
Query: 155 RMVGESTEAVGAGVGGGSSGNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILG 214
+++G + G+ G +S PTL+ +LT +A+E LDPV+GR +I+RV+++L
Sbjct: 140 QLLG--SNETGSSAAGTNSNANTPTLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLS 197
Query: 215 RRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEF 274
RRTKNNP LIGEPGVGKTAIAEGLAQ+I + +VP+ + K+V+TLDMG +VAGTKYRGEF
Sbjct: 198 RRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTVVAGTKYRGEF 257
Query: 275 EERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATTL 334
E+RLKK+M+EI+Q+ IILFIDE+HTLIGAG AEGAIDA+NILKPSLARGELQCIGATTL
Sbjct: 258 EDRLKKVMDEIRQAGNIILFIDELHTLIGAGGAEGAIDASNILKPSLARGELQCIGATTL 317
Query: 335 DEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQL 394
DEYRK+IEKD ALERRFQP++V +PSVDE+IQIL+GLR+RYE HH++ TD+A+ +A +L
Sbjct: 318 DEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKL 377
Query: 395 SYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFE 454
S +YISDRFLPDKAIDLIDEAGS+VRLR P +ELE++L ++ KEK+ AV+ Q+FE
Sbjct: 378 SDRYISDRFLPDKAIDLIDEAGSKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFE 437
Query: 455 KAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEKV 514
KA LRD E L+ Q+ KE + G VT DI +VS+WTG+PV K+
Sbjct: 438 KAASLRDTEQRLREQVEDTKKSWKE------KQGQENSEVTVDDIAMVVSSWTGVPVSKI 491
Query: 515 STDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGK 574
+ E+D+LL ME LH RVIGQDEAV A+++A+RRAR GLK+P RPI SFIF GPTGVGK
Sbjct: 492 AQTETDKLLNMENILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGK 551
Query: 575 SELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPY 634
+ELA+ALA FG EE+MIR+DMSE+ME+H+ S+L+GSPPGYVGY EGGQLTE VRR+PY
Sbjct: 552 TELARALAESIFGDEESMIRIDMSEYMEKHSTSRLVGSPPGYVGYDEGGQLTEKVRRKPY 611
Query: 635 TVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRR 694
+VVL DEIEKAHPDVFN++LQ+LEDGRLTDSKGRTVDF+NT+LIMTSNVG+S +++ +
Sbjct: 612 SVVLLDEIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASELKR-NKY 670
Query: 695 IGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLK 754
+GF++ ++ ++ +K V ELK+ FRPEF+NR+DE+IVF L K + EI +M
Sbjct: 671 VGFNV--QDETQNHKDMKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSD 728
Query: 755 EVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKE 814
++ RLK +D+ +++T+ + +V EEG + YGARPLRRAI + +ED ++E++L I +
Sbjct: 729 QLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKHVEDRLSEELLRGNIHK 788
Query: 815 GDSVIVDVDSDGNVTV 830
G +++DV+ DG V
Sbjct: 789 GQHIVLDVE-DGEFVV 803
Score = 87.0 bits (214), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 54/72 (75%)
Query: 91 MFERFTEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIR 150
MF RFTE+A KV+ LAQEEA RLGHN IG+EH+LLGL+REGEG+AA+ L+ LG I+
Sbjct: 2 MFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQ 61
Query: 151 TQVIRMVGESTE 162
+V ++G E
Sbjct: 62 KEVESLIGRGQE 73
>sp|Q8CQ88|CLPC_STAES ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus epidermidis (strain ATCC 12228)
GN=clpC PE=3 SV=1
Length = 817
Score = 866 bits (2238), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/730 (57%), Positives = 563/730 (77%), Gaps = 11/730 (1%)
Query: 94 RFTEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRTQV 153
+T +A KVI L+ +EAR+L HN++G+EH+LLGL+RE EGVAARV NL + + R QV
Sbjct: 79 HYTPRAKKVIELSMDEARKLHHNFVGTEHILLGLIRENEGVAARVFANLDLNITKARAQV 138
Query: 154 IRMVGESTEAVGAGVGGGSSGNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQIL 213
++ +G S E S N PTL+ +LT +A++G LDPVVGR +I RV+++L
Sbjct: 139 VKALG-SPEMSNKNAQANKSNN-TPTLDGLARDLTVIAKDGTLDPVVGRDKEITRVIEVL 196
Query: 214 GRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGE 273
RRTKNNP LIGEPGVGKTAIAEGLAQ I +VP+T++ K+V++LDMG +VAGTKYRGE
Sbjct: 197 SRRTKNNPVLIGEPGVGKTAIAEGLAQAIVKNEVPETLKDKRVMSLDMGTVVAGTKYRGE 256
Query: 274 FEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATT 333
FEERLKK+MEEI Q+ +ILFIDE+HTL+GAG AEGAIDA+NILKP+LARGELQCIGATT
Sbjct: 257 FEERLKKVMEEIHQAGNVILFIDELHTLVGAGGAEGAIDASNILKPALARGELQCIGATT 316
Query: 334 LDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQ 393
LDEYRK+IEKD ALERRFQP++V EP+V++TI+ILKGLR+RYE HH++ +DEAL +AA+
Sbjct: 317 LDEYRKNIEKDAALERRFQPIQVDEPTVEDTIEILKGLRDRYEAHHRINISDEALEAAAK 376
Query: 394 LSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDF 453
LS +Y+SDRFLPDKAIDLIDEA S+VRL+ P +E+E+E+ ++ EK+ AV Q+F
Sbjct: 377 LSDRYVSDRFLPDKAIDLIDEASSKVRLKSHTTPSNLKEIEQEIDKVKNEKDAAVHAQEF 436
Query: 454 EKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEK 513
E A LRD++ L+ Q D E A+ G + ++E +I +++ WTGIP+ K
Sbjct: 437 ENAANLRDKQSKLEKQYE---DAKNEWKNAQ---GGLDTALSEENIAEVIAGWTGIPLTK 490
Query: 514 VSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVG 573
++ ESDRLL +E+TLHKRVIGQ++AV +IS+A+RRAR GLK+P RPI SFIF GPTGVG
Sbjct: 491 INETESDRLLNLEDTLHKRVIGQNDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPTGVG 550
Query: 574 KSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRP 633
K+ELA+ALA FG ++AMIR+DMSEFME+H VS+L+G+PPGYVG+ +GGQLTE VRR+P
Sbjct: 551 KTELARALAESMFGEDDAMIRVDMSEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVRRKP 610
Query: 634 YTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGR 693
Y+V+LFDEIEKAHPDVFN++LQ+L+DG LTD+KGRTVDF+NT++IMTSNVG+ ++ R
Sbjct: 611 YSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGRTVDFRNTVIIMTSNVGAQELQD-QR 669
Query: 694 RIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIML 753
GF + S Y ++ + +ELK FRPEFLNR+D++IVF +LTK E+KEI +M+
Sbjct: 670 FAGF--GGASEGSDYETVRKTMMKELKNSFRPEFLNRVDDIIVFHKLTKDELKEIVTMMV 727
Query: 754 KEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIK 813
++ RL ++I + VT++ +E++ EEGY+P YGARPL RAI + +ED+++E +L
Sbjct: 728 NKLTHRLSEQNINIVVTDKAKEKIAEEGYDPEYGARPLIRAIQKTVEDNLSELILDGNKI 787
Query: 814 EGDSVIVDVD 823
EG V +D D
Sbjct: 788 EGKEVTIDHD 797
Score = 69.7 bits (169), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 51/75 (68%)
Query: 91 MFERFTEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIR 150
+F R TE+A +V+ AQEEA RL H+ IG+EHLLLGL++E EG+AA+VL + +
Sbjct: 2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKEPEGIAAKVLVSFNITEDKVI 61
Query: 151 TQVIRMVGESTEAVG 165
+V +++G E +G
Sbjct: 62 EEVEKLIGHGQEQMG 76
>sp|Q5HRM8|CLPC_STAEQ ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus epidermidis (strain ATCC 35984 /
RP62A) GN=clpC PE=3 SV=1
Length = 817
Score = 866 bits (2238), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/730 (57%), Positives = 563/730 (77%), Gaps = 11/730 (1%)
Query: 94 RFTEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRTQV 153
+T +A KVI L+ +EAR+L HN++G+EH+LLGL+RE EGVAARV NL + + R QV
Sbjct: 79 HYTPRAKKVIELSMDEARKLHHNFVGTEHILLGLIRENEGVAARVFANLDLNITKARAQV 138
Query: 154 IRMVGESTEAVGAGVGGGSSGNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQIL 213
++ +G S E S N PTL+ +LT +A++G LDPVVGR +I RV+++L
Sbjct: 139 VKALG-SPEMSNKNAQANKSNN-TPTLDGLARDLTVIAKDGTLDPVVGRDKEITRVIEVL 196
Query: 214 GRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGE 273
RRTKNNP LIGEPGVGKTAIAEGLAQ I +VP+T++ K+V++LDMG +VAGTKYRGE
Sbjct: 197 SRRTKNNPVLIGEPGVGKTAIAEGLAQAIVKNEVPETLKDKRVMSLDMGTVVAGTKYRGE 256
Query: 274 FEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATT 333
FEERLKK+MEEI Q+ +ILFIDE+HTL+GAG AEGAIDA+NILKP+LARGELQCIGATT
Sbjct: 257 FEERLKKVMEEIHQAGNVILFIDELHTLVGAGGAEGAIDASNILKPALARGELQCIGATT 316
Query: 334 LDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQ 393
LDEYRK+IEKD ALERRFQP++V EP+V++TI+ILKGLR+RYE HH++ +DEAL +AA+
Sbjct: 317 LDEYRKNIEKDAALERRFQPIQVDEPTVEDTIEILKGLRDRYEAHHRINISDEALEAAAK 376
Query: 394 LSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDF 453
LS +Y+SDRFLPDKAIDLIDEA S+VRL+ P +E+E+E+ ++ EK+ AV Q+F
Sbjct: 377 LSDRYVSDRFLPDKAIDLIDEASSKVRLKSHTTPSNLKEIEQEIDKVKNEKDAAVHAQEF 436
Query: 454 EKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEK 513
E A LRD++ L+ Q D E A+ G + ++E +I +++ WTGIP+ K
Sbjct: 437 ENAANLRDKQSKLEKQYE---DAKNEWKNAQ---GGLDTALSEENIAEVIAGWTGIPLTK 490
Query: 514 VSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVG 573
++ ESDRLL +E+TLHKRVIGQ++AV +IS+A+RRAR GLK+P RPI SFIF GPTGVG
Sbjct: 491 INETESDRLLNLEDTLHKRVIGQNDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPTGVG 550
Query: 574 KSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRP 633
K+ELA+ALA FG ++AMIR+DMSEFME+H VS+L+G+PPGYVG+ +GGQLTE VRR+P
Sbjct: 551 KTELARALAESMFGEDDAMIRVDMSEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVRRKP 610
Query: 634 YTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGR 693
Y+V+LFDEIEKAHPDVFN++LQ+L+DG LTD+KGRTVDF+NT++IMTSNVG+ ++ R
Sbjct: 611 YSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGRTVDFRNTVIIMTSNVGAQELQD-QR 669
Query: 694 RIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIML 753
GF + S Y ++ + +ELK FRPEFLNR+D++IVF +LTK E+KEI +M+
Sbjct: 670 FAGF--GGASEGSDYETVRKTMMKELKNSFRPEFLNRVDDIIVFHKLTKDELKEIVTMMV 727
Query: 754 KEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIK 813
++ RL ++I + VT++ +E++ EEGY+P YGARPL RAI + +ED+++E +L
Sbjct: 728 NKLTHRLSEQNINIVVTDKAKEKIAEEGYDPEYGARPLIRAIQKTVEDNLSELILDGNKI 787
Query: 814 EGDSVIVDVD 823
EG V +D D
Sbjct: 788 EGKEVTIDHD 797
Score = 69.7 bits (169), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 51/75 (68%)
Query: 91 MFERFTEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIR 150
+F R TE+A +V+ AQEEA RL H+ IG+EHLLLGL++E EG+AA+VL + +
Sbjct: 2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKEPEGIAAKVLVSFNITEDKVI 61
Query: 151 TQVIRMVGESTEAVG 165
+V +++G E +G
Sbjct: 62 EEVEKLIGHGQEQMG 76
>sp|Q2YSD6|CLPC_STAAB ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain bovine RF122 / ET3-1)
GN=clpC PE=3 SV=1
Length = 818
Score = 862 bits (2228), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/730 (57%), Positives = 563/730 (77%), Gaps = 11/730 (1%)
Query: 94 RFTEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRTQV 153
+T +A KVI L+ +EAR+L HN++G+EH+LLGL+RE EGVAARV NL + + R QV
Sbjct: 79 HYTPRAKKVIELSMDEARKLHHNFVGTEHILLGLIRENEGVAARVFANLDLNITKARAQV 138
Query: 154 IRMVGESTEAVGAGVGGGSSGNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQIL 213
++ +G + S N PTL+ +LT +A++G LDPV+GR +I RV+++L
Sbjct: 139 VKALGNP--EMSNKNAQASKSNNTPTLDSLARDLTVIAKDGTLDPVIGRDKEITRVIEVL 196
Query: 214 GRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGE 273
RRTKNNP LIGEPGVGKTAIAEGLAQ I + +VP+T++ K+V++LDMG +VAGTKYRGE
Sbjct: 197 SRRTKNNPVLIGEPGVGKTAIAEGLAQAIVNNEVPETLKDKRVMSLDMGTVVAGTKYRGE 256
Query: 274 FEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATT 333
FEERLKK+MEEI+Q+ +ILFIDE+HTL+GAG AEGAIDA+NILKP+LARGELQCIGATT
Sbjct: 257 FEERLKKVMEEIQQAGNVILFIDELHTLVGAGGAEGAIDASNILKPALARGELQCIGATT 316
Query: 334 LDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQ 393
LDEYRK+IEKD ALERRFQPV+V EPSV +T+ ILKGLR+RYE HH++ +DEA+ +A +
Sbjct: 317 LDEYRKNIEKDAALERRFQPVQVDEPSVVDTVAILKGLRDRYEAHHRINISDEAIEAAVK 376
Query: 394 LSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDF 453
LS +Y+SDRFLPDKAIDLIDEA S+VRL+ P +E+E+E+ ++ EK+ AV Q+F
Sbjct: 377 LSNRYVSDRFLPDKAIDLIDEASSKVRLKSHTTPNNLKEIEQEIEKVKNEKDAAVHAQEF 436
Query: 454 EKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEK 513
E A LRD++ L+ Q ++ K T+ G + ++E DI +++ WTGIP+ K
Sbjct: 437 ENAANLRDKQTKLEKQYEEAKNEWK-----NTQNG-MSTSLSEEDIAEVIAGWTGIPLTK 490
Query: 514 VSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVG 573
++ ES++LL +E+TLH+RVIGQ +AV +IS+A+RRAR GLK+P RPI SFIF GPTGVG
Sbjct: 491 INETESEKLLSLEDTLHERVIGQKDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPTGVG 550
Query: 574 KSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRP 633
K+ELA+ALA FG ++AMIR+DMSEFME+H VS+L+G+PPGYVG+ +GGQLTE VRR+P
Sbjct: 551 KTELARALAESMFGDDDAMIRVDMSEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVRRKP 610
Query: 634 YTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGR 693
Y+V+LFDEIEKAHPDVFN++LQ+L+DG LTD+KGRTVDF+NT++IMTSNVG+ ++ R
Sbjct: 611 YSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGRTVDFRNTIIIMTSNVGAQELQD-QR 669
Query: 694 RIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIML 753
GF D +D Y I+ + +ELK FRPEFLNR+D++IVF +LTK E+KEI +M+
Sbjct: 670 FAGFGGSSDGQD--YETIRKTMLKELKNSFRPEFLNRVDDIIVFHKLTKEELKEIVTMMV 727
Query: 754 KEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIK 813
++ +RL ++I + VT++ ++++ EEGY+P YGARPL RAI + +ED+++E +L
Sbjct: 728 NKLTNRLSEQNINIIVTDKAKDKIAEEGYDPEYGARPLIRAIQKTIEDNLSELILDGNQI 787
Query: 814 EGDSVIVDVD 823
EG V VD D
Sbjct: 788 EGKKVTVDHD 797
Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 52/75 (69%)
Query: 91 MFERFTEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIR 150
+F R TE+A +V+ AQEEA RL H+ IG+EHLLLGL++E EG+AA+VLE+ +
Sbjct: 2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKEPEGIAAKVLESFNITEDKVI 61
Query: 151 TQVIRMVGESTEAVG 165
+V +++G + VG
Sbjct: 62 EEVEKLIGHGQDHVG 76
>sp|Q6GBW3|CLPC_STAAS ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain MSSA476) GN=clpC PE=3
SV=1
Length = 818
Score = 862 bits (2227), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 415/730 (56%), Positives = 561/730 (76%), Gaps = 11/730 (1%)
Query: 94 RFTEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRTQV 153
+T +A KVI L+ +EAR+L HN++G+EH+LLGL+RE EGVAARV NL + + R QV
Sbjct: 79 HYTPRAKKVIELSMDEARKLHHNFVGTEHILLGLIRENEGVAARVFANLDLNITKARAQV 138
Query: 154 IRMVGESTEAVGAGVGGGSSGNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQIL 213
++ +G + S N PTL+ +LT +A++G LDPV+GR +I RV+++L
Sbjct: 139 VKALGNP--EMSNKNAQASKSNNTPTLDSLARDLTVIAKDGTLDPVIGRDKEITRVIEVL 196
Query: 214 GRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGE 273
RRTKNNP LIGEPGVGKTAIAEGLAQ I + +VP+T++ K+V++LDMG +VAGTKYRGE
Sbjct: 197 SRRTKNNPVLIGEPGVGKTAIAEGLAQAIVNNEVPETLKDKRVMSLDMGTVVAGTKYRGE 256
Query: 274 FEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATT 333
FEERLKK+MEEI+Q+ +ILFIDE+HTL+GAG AEGAIDA+NILKP+LARGELQCIGATT
Sbjct: 257 FEERLKKVMEEIQQAGNVILFIDELHTLVGAGGAEGAIDASNILKPALARGELQCIGATT 316
Query: 334 LDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQ 393
LDEYRK+IEKD ALERRFQPV+V EPSV +T+ ILKGLR+RYE HH++ +DEA+ +A +
Sbjct: 317 LDEYRKNIEKDAALERRFQPVQVDEPSVVDTVAILKGLRDRYEAHHRINISDEAIEAAVK 376
Query: 394 LSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDF 453
LS +Y+SDRFLPDKAIDLIDEA S+VRL+ P +E+E+E+ ++ EK+ AV Q+F
Sbjct: 377 LSNRYVSDRFLPDKAIDLIDEASSKVRLKSHTTPNNLKEIEQEIEKVKNEKDAAVHAQEF 436
Query: 454 EKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEK 513
E A LRD++ L+ Q ++ K + + ++E DI +++ WTGIP+ K
Sbjct: 437 ENAANLRDKQTKLEKQYEEAKNEWKNAQNGMSTS------LSEEDIAEVIAGWTGIPLTK 490
Query: 514 VSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVG 573
++ ES++LL +E+TLH+RVIGQ +AV +IS+A+RRAR GLK+P RPI SFIF GPTGVG
Sbjct: 491 INETESEKLLSLEDTLHERVIGQKDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPTGVG 550
Query: 574 KSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRP 633
K+ELA+ALA FG ++AMIR+DMSEFME+H VS+L+G+PPGYVG+ +GGQLTE VRR+P
Sbjct: 551 KTELARALAESMFGDDDAMIRVDMSEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVRRKP 610
Query: 634 YTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGR 693
Y+V+LFDEIEKAHPDVFN++LQ+L+DG LTD+KGRTVDF+NT++IMTSNVG+ ++ R
Sbjct: 611 YSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGRTVDFRNTIIIMTSNVGAQELQD-QR 669
Query: 694 RIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIML 753
GF D +D Y I+ + +ELK FRPEFLNR+D++IVF +LTK E+KEI +M+
Sbjct: 670 FAGFGGSSDGQD--YETIRKTMLKELKNSFRPEFLNRVDDIIVFHKLTKEELKEIVTMMV 727
Query: 754 KEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIK 813
++ +RL ++I + VT++ ++++ EEGY+P YGARPL RAI + +ED+++E +L
Sbjct: 728 NKLTNRLSEQNINIIVTDKAKDKIAEEGYDPEYGARPLIRAIQKTIEDNLSELILDGNQI 787
Query: 814 EGDSVIVDVD 823
EG V VD D
Sbjct: 788 EGKKVTVDHD 797
Score = 72.4 bits (176), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 52/75 (69%)
Query: 91 MFERFTEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIR 150
+F R TE+A +V+ AQEEA RL H+ IG+EHLLLGL++E EG+AA+VLE+ +
Sbjct: 2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKEPEGIAAKVLESFNITEDKVI 61
Query: 151 TQVIRMVGESTEAVG 165
+V +++G + VG
Sbjct: 62 EEVEKLIGHGQDHVG 76
>sp|Q6GJE4|CLPC_STAAR ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain MRSA252) GN=clpC PE=3
SV=1
Length = 818
Score = 862 bits (2227), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 415/730 (56%), Positives = 561/730 (76%), Gaps = 11/730 (1%)
Query: 94 RFTEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRTQV 153
+T +A KVI L+ +EAR+L HN++G+EH+LLGL+RE EGVAARV NL + + R QV
Sbjct: 79 HYTPRAKKVIELSMDEARKLHHNFVGTEHILLGLIRENEGVAARVFANLDLNITKARAQV 138
Query: 154 IRMVGESTEAVGAGVGGGSSGNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQIL 213
++ +G + S N PTL+ +LT +A++G LDPV+GR +I RV+++L
Sbjct: 139 VKALGNP--EMSNKNAQASKSNNTPTLDSLARDLTVIAKDGTLDPVIGRDKEITRVIEVL 196
Query: 214 GRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGE 273
RRTKNNP LIGEPGVGKTAIAEGLAQ I + +VP+T++ K+V++LDMG +VAGTKYRGE
Sbjct: 197 SRRTKNNPVLIGEPGVGKTAIAEGLAQAIVNNEVPETLKDKRVMSLDMGTVVAGTKYRGE 256
Query: 274 FEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATT 333
FEERLKK+MEEI+Q+ +ILFIDE+HTL+GAG AEGAIDA+NILKP+LARGELQCIGATT
Sbjct: 257 FEERLKKVMEEIQQAGNVILFIDELHTLVGAGGAEGAIDASNILKPALARGELQCIGATT 316
Query: 334 LDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQ 393
LDEYRK+IEKD ALERRFQPV+V EPSV +T+ ILKGLR+RYE HH++ +DEA+ +A +
Sbjct: 317 LDEYRKNIEKDAALERRFQPVQVDEPSVVDTVAILKGLRDRYEAHHRINISDEAIEAAVK 376
Query: 394 LSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDF 453
LS +Y+SDRFLPDKAIDLIDEA S+VRL+ P +E+E+E+ ++ EK+ AV Q+F
Sbjct: 377 LSNRYVSDRFLPDKAIDLIDEASSKVRLKSHTTPNNLKEIEQEIEKVKNEKDAAVHAQEF 436
Query: 454 EKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEK 513
E A LRD++ L+ Q ++ K + + ++E DI +++ WTGIP+ K
Sbjct: 437 ENAANLRDKQTKLEKQYEEAKNEWKNAQNGMSTS------LSEEDIAEVIAGWTGIPLTK 490
Query: 514 VSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVG 573
++ ES++LL +E+TLH+RVIGQ +AV +IS+A+RRAR GLK+P RPI SFIF GPTGVG
Sbjct: 491 INETESEKLLSLEDTLHERVIGQKDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPTGVG 550
Query: 574 KSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRP 633
K+ELA+ALA FG ++AMIR+DMSEFME+H VS+L+G+PPGYVG+ +GGQLTE VRR+P
Sbjct: 551 KTELARALAESMFGDDDAMIRVDMSEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVRRKP 610
Query: 634 YTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGR 693
Y+V+LFDEIEKAHPDVFN++LQ+L+DG LTD+KGRTVDF+NT++IMTSNVG+ ++ R
Sbjct: 611 YSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGRTVDFRNTIIIMTSNVGAQELQD-QR 669
Query: 694 RIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIML 753
GF D +D Y I+ + +ELK FRPEFLNR+D++IVF +LTK E+KEI +M+
Sbjct: 670 FAGFGGSSDGQD--YETIRKTMLKELKNSFRPEFLNRVDDIIVFHKLTKEELKEIVTMMV 727
Query: 754 KEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIK 813
++ +RL ++I + VT++ ++++ EEGY+P YGARPL RAI + +ED+++E +L
Sbjct: 728 NKLTNRLSEQNINIIVTDKAKDKIAEEGYDPEYGARPLIRAIQKTIEDNLSELILDGNQI 787
Query: 814 EGDSVIVDVD 823
EG V VD D
Sbjct: 788 EGKKVTVDHD 797
Score = 72.4 bits (176), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 52/75 (69%)
Query: 91 MFERFTEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIR 150
+F R TE+A +V+ AQEEA RL H+ IG+EHLLLGL++E EG+AA+VLE+ +
Sbjct: 2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKEPEGIAAKVLESFNITEDKVI 61
Query: 151 TQVIRMVGESTEAVG 165
+V +++G + VG
Sbjct: 62 EEVEKLIGHGQDHVG 76
>sp|Q7A797|CLPC_STAAN ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain N315) GN=clpC PE=1 SV=1
Length = 818
Score = 862 bits (2227), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 415/730 (56%), Positives = 561/730 (76%), Gaps = 11/730 (1%)
Query: 94 RFTEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRTQV 153
+T +A KVI L+ +EAR+L HN++G+EH+LLGL+RE EGVAARV NL + + R QV
Sbjct: 79 HYTPRAKKVIELSMDEARKLHHNFVGTEHILLGLIRENEGVAARVFANLDLNITKARAQV 138
Query: 154 IRMVGESTEAVGAGVGGGSSGNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQIL 213
++ +G + S N PTL+ +LT +A++G LDPV+GR +I RV+++L
Sbjct: 139 VKALGNP--EMSNKNAQASKSNNTPTLDSLARDLTVIAKDGTLDPVIGRDKEITRVIEVL 196
Query: 214 GRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGE 273
RRTKNNP LIGEPGVGKTAIAEGLAQ I + +VP+T++ K+V++LDMG +VAGTKYRGE
Sbjct: 197 SRRTKNNPVLIGEPGVGKTAIAEGLAQAIVNNEVPETLKDKRVMSLDMGTVVAGTKYRGE 256
Query: 274 FEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATT 333
FEERLKK+MEEI+Q+ +ILFIDE+HTL+GAG AEGAIDA+NILKP+LARGELQCIGATT
Sbjct: 257 FEERLKKVMEEIQQAGNVILFIDELHTLVGAGGAEGAIDASNILKPALARGELQCIGATT 316
Query: 334 LDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQ 393
LDEYRK+IEKD ALERRFQPV+V EPSV +T+ ILKGLR+RYE HH++ +DEA+ +A +
Sbjct: 317 LDEYRKNIEKDAALERRFQPVQVDEPSVVDTVAILKGLRDRYEAHHRINISDEAIEAAVK 376
Query: 394 LSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDF 453
LS +Y+SDRFLPDKAIDLIDEA S+VRL+ P +E+E+E+ ++ EK+ AV Q+F
Sbjct: 377 LSNRYVSDRFLPDKAIDLIDEASSKVRLKSHTTPNNLKEIEQEIEKVKNEKDAAVHAQEF 436
Query: 454 EKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEK 513
E A LRD++ L+ Q ++ K + + ++E DI +++ WTGIP+ K
Sbjct: 437 ENAANLRDKQTKLEKQYEEAKNEWKNAQNGMSTS------LSEEDIAEVIAGWTGIPLTK 490
Query: 514 VSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVG 573
++ ES++LL +E+TLH+RVIGQ +AV +IS+A+RRAR GLK+P RPI SFIF GPTGVG
Sbjct: 491 INETESEKLLSLEDTLHERVIGQKDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPTGVG 550
Query: 574 KSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRP 633
K+ELA+ALA FG ++AMIR+DMSEFME+H VS+L+G+PPGYVG+ +GGQLTE VRR+P
Sbjct: 551 KTELARALAESMFGDDDAMIRVDMSEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVRRKP 610
Query: 634 YTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGR 693
Y+V+LFDEIEKAHPDVFN++LQ+L+DG LTD+KGRTVDF+NT++IMTSNVG+ ++ R
Sbjct: 611 YSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGRTVDFRNTIIIMTSNVGAQELQD-QR 669
Query: 694 RIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIML 753
GF D +D Y I+ + +ELK FRPEFLNR+D++IVF +LTK E+KEI +M+
Sbjct: 670 FAGFGGSSDGQD--YETIRKTMLKELKNSFRPEFLNRVDDIIVFHKLTKEELKEIVTMMV 727
Query: 754 KEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIK 813
++ +RL ++I + VT++ ++++ EEGY+P YGARPL RAI + +ED+++E +L
Sbjct: 728 NKLTNRLSEQNINIIVTDKAKDKIAEEGYDPEYGARPLIRAIQKTIEDNLSELILDGNQI 787
Query: 814 EGDSVIVDVD 823
EG V VD D
Sbjct: 788 EGKKVTVDHD 797
Score = 72.4 bits (176), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 52/75 (69%)
Query: 91 MFERFTEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIR 150
+F R TE+A +V+ AQEEA RL H+ IG+EHLLLGL++E EG+AA+VLE+ +
Sbjct: 2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKEPEGIAAKVLESFNITEDKVI 61
Query: 151 TQVIRMVGESTEAVG 165
+V +++G + VG
Sbjct: 62 EEVEKLIGHGQDHVG 76
>sp|Q99W78|CLPC_STAAM ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain Mu50 / ATCC 700699)
GN=clpC PE=1 SV=1
Length = 818
Score = 862 bits (2227), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 415/730 (56%), Positives = 561/730 (76%), Gaps = 11/730 (1%)
Query: 94 RFTEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRTQV 153
+T +A KVI L+ +EAR+L HN++G+EH+LLGL+RE EGVAARV NL + + R QV
Sbjct: 79 HYTPRAKKVIELSMDEARKLHHNFVGTEHILLGLIRENEGVAARVFANLDLNITKARAQV 138
Query: 154 IRMVGESTEAVGAGVGGGSSGNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQIL 213
++ +G + S N PTL+ +LT +A++G LDPV+GR +I RV+++L
Sbjct: 139 VKALGNP--EMSNKNAQASKSNNTPTLDSLARDLTVIAKDGTLDPVIGRDKEITRVIEVL 196
Query: 214 GRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGE 273
RRTKNNP LIGEPGVGKTAIAEGLAQ I + +VP+T++ K+V++LDMG +VAGTKYRGE
Sbjct: 197 SRRTKNNPVLIGEPGVGKTAIAEGLAQAIVNNEVPETLKDKRVMSLDMGTVVAGTKYRGE 256
Query: 274 FEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATT 333
FEERLKK+MEEI+Q+ +ILFIDE+HTL+GAG AEGAIDA+NILKP+LARGELQCIGATT
Sbjct: 257 FEERLKKVMEEIQQAGNVILFIDELHTLVGAGGAEGAIDASNILKPALARGELQCIGATT 316
Query: 334 LDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQ 393
LDEYRK+IEKD ALERRFQPV+V EPSV +T+ ILKGLR+RYE HH++ +DEA+ +A +
Sbjct: 317 LDEYRKNIEKDAALERRFQPVQVDEPSVVDTVAILKGLRDRYEAHHRINISDEAIEAAVK 376
Query: 394 LSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDF 453
LS +Y+SDRFLPDKAIDLIDEA S+VRL+ P +E+E+E+ ++ EK+ AV Q+F
Sbjct: 377 LSNRYVSDRFLPDKAIDLIDEASSKVRLKSHTTPNNLKEIEQEIEKVKNEKDAAVHAQEF 436
Query: 454 EKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEK 513
E A LRD++ L+ Q ++ K + + ++E DI +++ WTGIP+ K
Sbjct: 437 ENAANLRDKQTKLEKQYEEAKNEWKNAQNGMSTS------LSEEDIAEVIAGWTGIPLTK 490
Query: 514 VSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVG 573
++ ES++LL +E+TLH+RVIGQ +AV +IS+A+RRAR GLK+P RPI SFIF GPTGVG
Sbjct: 491 INETESEKLLSLEDTLHERVIGQKDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPTGVG 550
Query: 574 KSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRP 633
K+ELA+ALA FG ++AMIR+DMSEFME+H VS+L+G+PPGYVG+ +GGQLTE VRR+P
Sbjct: 551 KTELARALAESMFGDDDAMIRVDMSEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVRRKP 610
Query: 634 YTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGR 693
Y+V+LFDEIEKAHPDVFN++LQ+L+DG LTD+KGRTVDF+NT++IMTSNVG+ ++ R
Sbjct: 611 YSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGRTVDFRNTIIIMTSNVGAQELQD-QR 669
Query: 694 RIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIML 753
GF D +D Y I+ + +ELK FRPEFLNR+D++IVF +LTK E+KEI +M+
Sbjct: 670 FAGFGGSSDGQD--YETIRKTMLKELKNSFRPEFLNRVDDIIVFHKLTKEELKEIVTMMV 727
Query: 754 KEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIK 813
++ +RL ++I + VT++ ++++ EEGY+P YGARPL RAI + +ED+++E +L
Sbjct: 728 NKLTNRLSEQNINIIVTDKAKDKIAEEGYDPEYGARPLIRAIQKTIEDNLSELILDGNQI 787
Query: 814 EGDSVIVDVD 823
EG V VD D
Sbjct: 788 EGKKVTVDHD 797
Score = 72.4 bits (176), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 52/75 (69%)
Query: 91 MFERFTEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIR 150
+F R TE+A +V+ AQEEA RL H+ IG+EHLLLGL++E EG+AA+VLE+ +
Sbjct: 2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKEPEGIAAKVLESFNITEDKVI 61
Query: 151 TQVIRMVGESTEAVG 165
+V +++G + VG
Sbjct: 62 EEVEKLIGHGQDHVG 76
>sp|P0C281|CLPC_STAAC ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain COL) GN=clpC PE=3 SV=1
Length = 818
Score = 862 bits (2227), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 415/730 (56%), Positives = 561/730 (76%), Gaps = 11/730 (1%)
Query: 94 RFTEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRTQV 153
+T +A KVI L+ +EAR+L HN++G+EH+LLGL+RE EGVAARV NL + + R QV
Sbjct: 79 HYTPRAKKVIELSMDEARKLHHNFVGTEHILLGLIRENEGVAARVFANLDLNITKARAQV 138
Query: 154 IRMVGESTEAVGAGVGGGSSGNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQIL 213
++ +G + S N PTL+ +LT +A++G LDPV+GR +I RV+++L
Sbjct: 139 VKALGNP--EMSNKNAQASKSNNTPTLDSLARDLTVIAKDGTLDPVIGRDKEITRVIEVL 196
Query: 214 GRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGE 273
RRTKNNP LIGEPGVGKTAIAEGLAQ I + +VP+T++ K+V++LDMG +VAGTKYRGE
Sbjct: 197 SRRTKNNPVLIGEPGVGKTAIAEGLAQAIVNNEVPETLKDKRVMSLDMGTVVAGTKYRGE 256
Query: 274 FEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATT 333
FEERLKK+MEEI+Q+ +ILFIDE+HTL+GAG AEGAIDA+NILKP+LARGELQCIGATT
Sbjct: 257 FEERLKKVMEEIQQAGNVILFIDELHTLVGAGGAEGAIDASNILKPALARGELQCIGATT 316
Query: 334 LDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQ 393
LDEYRK+IEKD ALERRFQPV+V EPSV +T+ ILKGLR+RYE HH++ +DEA+ +A +
Sbjct: 317 LDEYRKNIEKDAALERRFQPVQVDEPSVVDTVAILKGLRDRYEAHHRINISDEAIEAAVK 376
Query: 394 LSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDF 453
LS +Y+SDRFLPDKAIDLIDEA S+VRL+ P +E+E+E+ ++ EK+ AV Q+F
Sbjct: 377 LSNRYVSDRFLPDKAIDLIDEASSKVRLKSHTTPNNLKEIEQEIEKVKNEKDAAVHAQEF 436
Query: 454 EKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEK 513
E A LRD++ L+ Q ++ K + + ++E DI +++ WTGIP+ K
Sbjct: 437 ENAANLRDKQTKLEKQYEEAKNEWKNAQNGMSTS------LSEEDIAEVIAGWTGIPLTK 490
Query: 514 VSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVG 573
++ ES++LL +E+TLH+RVIGQ +AV +IS+A+RRAR GLK+P RPI SFIF GPTGVG
Sbjct: 491 INETESEKLLSLEDTLHERVIGQKDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPTGVG 550
Query: 574 KSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRP 633
K+ELA+ALA FG ++AMIR+DMSEFME+H VS+L+G+PPGYVG+ +GGQLTE VRR+P
Sbjct: 551 KTELARALAESMFGDDDAMIRVDMSEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVRRKP 610
Query: 634 YTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGR 693
Y+V+LFDEIEKAHPDVFN++LQ+L+DG LTD+KGRTVDF+NT++IMTSNVG+ ++ R
Sbjct: 611 YSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGRTVDFRNTIIIMTSNVGAQELQD-QR 669
Query: 694 RIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIML 753
GF D +D Y I+ + +ELK FRPEFLNR+D++IVF +LTK E+KEI +M+
Sbjct: 670 FAGFGGSSDGQD--YETIRKTMLKELKNSFRPEFLNRVDDIIVFHKLTKEELKEIVTMMV 727
Query: 754 KEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIK 813
++ +RL ++I + VT++ ++++ EEGY+P YGARPL RAI + +ED+++E +L
Sbjct: 728 NKLTNRLSEQNINIIVTDKAKDKIAEEGYDPEYGARPLIRAIQKTIEDNLSELILDGNQI 787
Query: 814 EGDSVIVDVD 823
EG V VD D
Sbjct: 788 EGKKVTVDHD 797
Score = 72.4 bits (176), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 52/75 (69%)
Query: 91 MFERFTEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIR 150
+F R TE+A +V+ AQEEA RL H+ IG+EHLLLGL++E EG+AA+VLE+ +
Sbjct: 2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKEPEGIAAKVLESFNITEDKVI 61
Query: 151 TQVIRMVGESTEAVG 165
+V +++G + VG
Sbjct: 62 EEVEKLIGHGQDHVG 76
>sp|Q2G0P5|CLPC_STAA8 ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain NCTC 8325) GN=clpC PE=1
SV=1
Length = 818
Score = 862 bits (2227), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 415/730 (56%), Positives = 561/730 (76%), Gaps = 11/730 (1%)
Query: 94 RFTEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRTQV 153
+T +A KVI L+ +EAR+L HN++G+EH+LLGL+RE EGVAARV NL + + R QV
Sbjct: 79 HYTPRAKKVIELSMDEARKLHHNFVGTEHILLGLIRENEGVAARVFANLDLNITKARAQV 138
Query: 154 IRMVGESTEAVGAGVGGGSSGNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQIL 213
++ +G + S N PTL+ +LT +A++G LDPV+GR +I RV+++L
Sbjct: 139 VKALGNP--EMSNKNAQASKSNNTPTLDSLARDLTVIAKDGTLDPVIGRDKEITRVIEVL 196
Query: 214 GRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGE 273
RRTKNNP LIGEPGVGKTAIAEGLAQ I + +VP+T++ K+V++LDMG +VAGTKYRGE
Sbjct: 197 SRRTKNNPVLIGEPGVGKTAIAEGLAQAIVNNEVPETLKDKRVMSLDMGTVVAGTKYRGE 256
Query: 274 FEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATT 333
FEERLKK+MEEI+Q+ +ILFIDE+HTL+GAG AEGAIDA+NILKP+LARGELQCIGATT
Sbjct: 257 FEERLKKVMEEIQQAGNVILFIDELHTLVGAGGAEGAIDASNILKPALARGELQCIGATT 316
Query: 334 LDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQ 393
LDEYRK+IEKD ALERRFQPV+V EPSV +T+ ILKGLR+RYE HH++ +DEA+ +A +
Sbjct: 317 LDEYRKNIEKDAALERRFQPVQVDEPSVVDTVAILKGLRDRYEAHHRINISDEAIEAAVK 376
Query: 394 LSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDF 453
LS +Y+SDRFLPDKAIDLIDEA S+VRL+ P +E+E+E+ ++ EK+ AV Q+F
Sbjct: 377 LSNRYVSDRFLPDKAIDLIDEASSKVRLKSHTTPNNLKEIEQEIEKVKNEKDAAVHAQEF 436
Query: 454 EKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEK 513
E A LRD++ L+ Q ++ K + + ++E DI +++ WTGIP+ K
Sbjct: 437 ENAANLRDKQTKLEKQYEEAKNEWKNAQNGMSTS------LSEEDIAEVIAGWTGIPLTK 490
Query: 514 VSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVG 573
++ ES++LL +E+TLH+RVIGQ +AV +IS+A+RRAR GLK+P RPI SFIF GPTGVG
Sbjct: 491 INETESEKLLSLEDTLHERVIGQKDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPTGVG 550
Query: 574 KSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRP 633
K+ELA+ALA FG ++AMIR+DMSEFME+H VS+L+G+PPGYVG+ +GGQLTE VRR+P
Sbjct: 551 KTELARALAESMFGDDDAMIRVDMSEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVRRKP 610
Query: 634 YTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGR 693
Y+V+LFDEIEKAHPDVFN++LQ+L+DG LTD+KGRTVDF+NT++IMTSNVG+ ++ R
Sbjct: 611 YSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGRTVDFRNTIIIMTSNVGAQELQD-QR 669
Query: 694 RIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIML 753
GF D +D Y I+ + +ELK FRPEFLNR+D++IVF +LTK E+KEI +M+
Sbjct: 670 FAGFGGSSDGQD--YETIRKTMLKELKNSFRPEFLNRVDDIIVFHKLTKEELKEIVTMMV 727
Query: 754 KEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIK 813
++ +RL ++I + VT++ ++++ EEGY+P YGARPL RAI + +ED+++E +L
Sbjct: 728 NKLTNRLSEQNINIIVTDKAKDKIAEEGYDPEYGARPLIRAIQKTIEDNLSELILDGNQI 787
Query: 814 EGDSVIVDVD 823
EG V VD D
Sbjct: 788 EGKKVTVDHD 797
Score = 72.4 bits (176), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 52/75 (69%)
Query: 91 MFERFTEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIR 150
+F R TE+A +V+ AQEEA RL H+ IG+EHLLLGL++E EG+AA+VLE+ +
Sbjct: 2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKEPEGIAAKVLESFNITEDKVI 61
Query: 151 TQVIRMVGESTEAVG 165
+V +++G + VG
Sbjct: 62 EEVEKLIGHGQDHVG 76
>sp|Q2FJB5|CLPC_STAA3 ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain USA300) GN=clpC PE=3
SV=1
Length = 818
Score = 862 bits (2227), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 415/730 (56%), Positives = 561/730 (76%), Gaps = 11/730 (1%)
Query: 94 RFTEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRTQV 153
+T +A KVI L+ +EAR+L HN++G+EH+LLGL+RE EGVAARV NL + + R QV
Sbjct: 79 HYTPRAKKVIELSMDEARKLHHNFVGTEHILLGLIRENEGVAARVFANLDLNITKARAQV 138
Query: 154 IRMVGESTEAVGAGVGGGSSGNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQIL 213
++ +G + S N PTL+ +LT +A++G LDPV+GR +I RV+++L
Sbjct: 139 VKALGNP--EMSNKNAQASKSNNTPTLDSLARDLTVIAKDGTLDPVIGRDKEITRVIEVL 196
Query: 214 GRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGE 273
RRTKNNP LIGEPGVGKTAIAEGLAQ I + +VP+T++ K+V++LDMG +VAGTKYRGE
Sbjct: 197 SRRTKNNPVLIGEPGVGKTAIAEGLAQAIVNNEVPETLKDKRVMSLDMGTVVAGTKYRGE 256
Query: 274 FEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATT 333
FEERLKK+MEEI+Q+ +ILFIDE+HTL+GAG AEGAIDA+NILKP+LARGELQCIGATT
Sbjct: 257 FEERLKKVMEEIQQAGNVILFIDELHTLVGAGGAEGAIDASNILKPALARGELQCIGATT 316
Query: 334 LDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQ 393
LDEYRK+IEKD ALERRFQPV+V EPSV +T+ ILKGLR+RYE HH++ +DEA+ +A +
Sbjct: 317 LDEYRKNIEKDAALERRFQPVQVDEPSVVDTVAILKGLRDRYEAHHRINISDEAIEAAVK 376
Query: 394 LSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDF 453
LS +Y+SDRFLPDKAIDLIDEA S+VRL+ P +E+E+E+ ++ EK+ AV Q+F
Sbjct: 377 LSNRYVSDRFLPDKAIDLIDEASSKVRLKSHTTPNNLKEIEQEIEKVKNEKDAAVHAQEF 436
Query: 454 EKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEK 513
E A LRD++ L+ Q ++ K + + ++E DI +++ WTGIP+ K
Sbjct: 437 ENAANLRDKQTKLEKQYEEAKNEWKNAQNGMSTS------LSEEDIAEVIAGWTGIPLTK 490
Query: 514 VSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVG 573
++ ES++LL +E+TLH+RVIGQ +AV +IS+A+RRAR GLK+P RPI SFIF GPTGVG
Sbjct: 491 INETESEKLLSLEDTLHERVIGQKDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPTGVG 550
Query: 574 KSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRP 633
K+ELA+ALA FG ++AMIR+DMSEFME+H VS+L+G+PPGYVG+ +GGQLTE VRR+P
Sbjct: 551 KTELARALAESMFGDDDAMIRVDMSEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVRRKP 610
Query: 634 YTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGR 693
Y+V+LFDEIEKAHPDVFN++LQ+L+DG LTD+KGRTVDF+NT++IMTSNVG+ ++ R
Sbjct: 611 YSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGRTVDFRNTIIIMTSNVGAQELQD-QR 669
Query: 694 RIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIML 753
GF D +D Y I+ + +ELK FRPEFLNR+D++IVF +LTK E+KEI +M+
Sbjct: 670 FAGFGGSSDGQD--YETIRKTMLKELKNSFRPEFLNRVDDIIVFHKLTKEELKEIVTMMV 727
Query: 754 KEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIK 813
++ +RL ++I + VT++ ++++ EEGY+P YGARPL RAI + +ED+++E +L
Sbjct: 728 NKLTNRLSEQNINIIVTDKAKDKIAEEGYDPEYGARPLIRAIQKTIEDNLSELILDGNQI 787
Query: 814 EGDSVIVDVD 823
EG V VD D
Sbjct: 788 EGKKVTVDHD 797
Score = 72.4 bits (176), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 52/75 (69%)
Query: 91 MFERFTEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIR 150
+F R TE+A +V+ AQEEA RL H+ IG+EHLLLGL++E EG+AA+VLE+ +
Sbjct: 2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKEPEGIAAKVLESFNITEDKVI 61
Query: 151 TQVIRMVGESTEAVG 165
+V +++G + VG
Sbjct: 62 EEVEKLIGHGQDHVG 76
>sp|Q8NXY8|CLPC_STAAW ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain MW2) GN=clpC PE=3 SV=1
Length = 818
Score = 858 bits (2217), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/730 (56%), Positives = 560/730 (76%), Gaps = 11/730 (1%)
Query: 94 RFTEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRTQV 153
+T +A KVI L+ +EAR+L HN++G+EH+LLGL+RE EGVAARV NL + + R QV
Sbjct: 79 HYTPRAKKVIELSMDEARKLHHNFVGTEHILLGLIRENEGVAARVFANLDLNITKARAQV 138
Query: 154 IRMVGESTEAVGAGVGGGSSGNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQIL 213
++ +G + S N PTL+ +LT +A++G LDPV+GR +I RV+++L
Sbjct: 139 VKALGNP--EMSNKNAQASKSNNTPTLDSLARDLTVIAKDGTLDPVIGRDKEITRVIEVL 196
Query: 214 GRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGE 273
RRTKNNP LIGEPGVGKTAIAEGLAQ I + +VP+T++ K+V++LDMG +VAGTKYRGE
Sbjct: 197 SRRTKNNPVLIGEPGVGKTAIAEGLAQAIVNNEVPETLKDKRVMSLDMGTVVAGTKYRGE 256
Query: 274 FEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATT 333
FEERLKK+MEEI+Q+ +ILFIDE+HTL+GAG AEGAIDA+NILKP+LARGELQCIGATT
Sbjct: 257 FEERLKKVMEEIQQAGNVILFIDELHTLVGAGGAEGAIDASNILKPALARGELQCIGATT 316
Query: 334 LDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQ 393
LDEYRK+IEKD ALERRFQPV+V EPSV +T+ ILKGLR+RYE HH++ +DEA+ +A +
Sbjct: 317 LDEYRKNIEKDAALERRFQPVQVDEPSVVDTVAILKGLRDRYEAHHRINISDEAIEAAVK 376
Query: 394 LSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDF 453
LS +Y+SDRFLPDKAIDLIDEA S+VRL+ P +E+E+E+ ++ EK+ AV Q+F
Sbjct: 377 LSNRYVSDRFLPDKAIDLIDEASSKVRLKSHTTPNNLKEIEQEIEKVKNEKDAAVHAQEF 436
Query: 454 EKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEK 513
E A LRD++ L+ Q ++ K + + ++E DI +++ WTGIP+ K
Sbjct: 437 ENAANLRDKQTKLEKQYEEAKNEWKNAQNGMSTS------LSEEDIAEVIAGWTGIPLTK 490
Query: 514 VSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVG 573
++ ES++LL +E+TLH+RVIGQ +AV +IS+A+RRAR GLK+P RPI SFIF GPTGVG
Sbjct: 491 INETESEKLLSLEDTLHERVIGQKDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPTGVG 550
Query: 574 KSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRP 633
K+ELA+ALA FG ++AMIR+DMSEFME+H VS+L+G+P GYVG+ +GGQLTE VRR+P
Sbjct: 551 KTELARALAESMFGDDDAMIRVDMSEFMEKHAVSRLVGAPLGYVGHDDGGQLTEKVRRKP 610
Query: 634 YTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGR 693
Y+V+LFDEIEKAHPDVFN++LQ+L+DG LTD+KGRTVDF+NT++IMTSNVG+ ++ R
Sbjct: 611 YSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGRTVDFRNTIIIMTSNVGAQELQD-QR 669
Query: 694 RIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIML 753
GF D +D Y I+ + +ELK FRPEFLNR+D++IVF +LTK E+KEI +M+
Sbjct: 670 FAGFGGSSDGQD--YETIRKTMLKELKNSFRPEFLNRVDDIIVFHKLTKEELKEIVTMMV 727
Query: 754 KEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIK 813
++ +RL ++I + VT++ ++++ EEGY+P YGARPL RAI + +ED+++E +L
Sbjct: 728 NKLTNRLSEQNINIIVTDKAKDKIAEEGYDPEYGARPLIRAIQKTIEDNLSELILDGNQI 787
Query: 814 EGDSVIVDVD 823
EG V VD D
Sbjct: 788 EGKKVTVDHD 797
Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 52/75 (69%)
Query: 91 MFERFTEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIR 150
+F R TE+A +V+ AQEEA RL H+ IG+EHLLLGL++E EG+AA+VLE+ +
Sbjct: 2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKEPEGIAAKVLESFNITEDKVI 61
Query: 151 TQVIRMVGESTEAVG 165
+V +++G + VG
Sbjct: 62 EEVEKLIGHGQDHVG 76
>sp|P24428|CLPC_MYCLE Probable ATP-dependent Clp protease ATP-binding subunit
OS=Mycobacterium leprae (strain TN) GN=clpC PE=3 SV=2
Length = 848
Score = 835 bits (2158), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/739 (57%), Positives = 563/739 (76%), Gaps = 21/739 (2%)
Query: 95 FTEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRTQVI 154
FT +A KV+ L+ EA +LGHNYIG+EH+LLGL+REGEGVAA+VL LGA+ + +R QVI
Sbjct: 80 FTPRAKKVLELSLREALQLGHNYIGTEHILLGLIREGEGVAAQVLVKLGAELTRVRQQVI 139
Query: 155 RMVG-----ESTEAVGAGVGGGSSGNKMP-TLEEYGTNLTKLAEEGKLDPVVGRQPQIER 208
+++ E+ EA G GG S L+++G NLT A E KLDPV+GR+ +IER
Sbjct: 140 QLLSGYQGKEAAEAGTGGRGGESGSPSTSLVLDQFGRNLTAAAMESKLDPVIGREKEIER 199
Query: 209 VVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGT 268
V+Q+L RRTKNNP LIGEPGVGKTA+ EGLAQ I G+VP+T++ K++ TLD+G LVAG+
Sbjct: 200 VMQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQAIVHGEVPETLKDKQLYTLDLGSLVAGS 259
Query: 269 KYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQC 328
+YRG+FEERLKK+++EI +IILFIDE+HTL+GAGAAEGAIDAA+ILKP LARGELQ
Sbjct: 260 RYRGDFEERLKKVLKEINTRGDIILFIDELHTLVGAGAAEGAIDAASILKPKLARGELQT 319
Query: 329 IGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEAL 388
IGATTLDEYRK+IEKD ALERRFQPV+V EP+V+ TI+ILKGLR+RYE HH++ TD A+
Sbjct: 320 IGATTLDEYRKYIEKDAALERRFQPVQVGEPTVEHTIEILKGLRDRYEAHHRVSITDSAM 379
Query: 389 VSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAV 448
V+AA L+ +YI+DRFLPDKAIDLIDEAG+R+R+R P + RE ++++ + +EK A+
Sbjct: 380 VAAATLADRYINDRFLPDKAIDLIDEAGARMRIRRMTAPPDLREFDEKIAEARREKESAI 439
Query: 449 RGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVD---IQHIVSA 505
QDFEKA LRDRE L AQ + + + +GD+ V+ EVD I ++
Sbjct: 440 DAQDFEKAASLRDREKQLVAQ--------RAEREKQWRSGDL-DVIAEVDDEQIAEVLGN 490
Query: 506 WTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFI 565
WTGIPV K++ E+ RLL+MEE LHKR+IGQ++AVKA+S+AIRR R GLK+P RP SFI
Sbjct: 491 WTGIPVFKLTEAETTRLLRMEEELHKRIIGQEDAVKAVSKAIRRTRAGLKDPKRPSGSFI 550
Query: 566 FSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQL 625
F+GP+GVGK+EL+KALA + FG ++A+I++DM EF +R T S+L G+PPGYVGY EGGQL
Sbjct: 551 FAGPSGVGKTELSKALANFLFGDDDALIQIDMGEFHDRFTASRLFGAPPGYVGYEEGGQL 610
Query: 626 TEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGS 685
TE VRR+P++VVLFDEIEKAH +++N +LQ+LEDGRLTD +GRTVDFKNT+LI TSN+G+
Sbjct: 611 TEKVRRKPFSVVLFDEIEKAHQEIYNSLLQVLEDGRLTDGQGRTVDFKNTVLIFTSNLGT 670
Query: 686 SVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEV 745
S I K +G ++ Y R+K V +ELK++FRPEFLNR+D++IVF QL++ E+
Sbjct: 671 SDISKP---VGLGFTQGSGENDYERMKQKVNDELKKHFRPEFLNRIDDIIVFHQLSRDEI 727
Query: 746 KEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSMAE 805
+ D+M+ V ++LK KD+ L++T + + + + G++P GARPLRR I R +ED ++E
Sbjct: 728 IRMVDLMISRVANQLKVKDMTLELTNKAKALLAKRGFDPVLGARPLRRTIQREIEDQLSE 787
Query: 806 KMLAREIKEGDSVIVDVDS 824
K+L E+ G V VDVD+
Sbjct: 788 KILFEEVGPGQVVTVDVDN 806
Score = 91.7 bits (226), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/73 (57%), Positives = 59/73 (80%)
Query: 91 MFERFTEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIR 150
MFERFT++A +V++LAQEEAR L HNYIG+EH+LLGL+ EGEGVAA+ L++LG +R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKSLDSLGISLEAVR 60
Query: 151 TQVIRMVGESTEA 163
+QV ++G+ +A
Sbjct: 61 SQVEDIIGQGQQA 73
>sp|P49574|CLPC_ODOSI ATP-dependent Clp protease ATP-binding subunit clpA homolog
OS=Odontella sinensis GN=clpC PE=3 SV=1
Length = 885
Score = 826 bits (2134), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/768 (53%), Positives = 563/768 (73%), Gaps = 41/768 (5%)
Query: 81 GRAGGFVVKAMFERFTEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLE 140
GR GFV + FT +A +V+ +A E + LG N++G+EH+LL L+ E +GVA R L+
Sbjct: 68 GRGTGFVASEI--PFTPRAKRVLEMAVHEGKDLGQNFVGTEHILLALISESDGVAMRTLD 125
Query: 141 NLGADPSNIRTQVIRMVGESTEAVGAGVGGG--------SSGNKMPTLEEYGTNLTKLAE 192
LG + +R ++ + E+ E + + G+ PTL+EY N++K A
Sbjct: 126 KLGVNIPKLRNLILMYIEENQEEILRPLTQAEKFLLEREKKGSSTPTLDEYSENISKEAV 185
Query: 193 EGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIE 252
+GKLDPV+GR +I V+++L RR KNNP LIGEPGVGKTA+AEGLAQ I + PD ++
Sbjct: 186 DGKLDPVIGRDKEIHEVIKVLARRRKNNPVLIGEPGVGKTAVAEGLAQLIIAEKAPDFLD 245
Query: 253 GKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAID 312
G ++ LD+G ++AGTKYRGEFEER+K+++EE++ IIL IDE+HTL+GAGAAEGA+D
Sbjct: 246 GNLLMALDLGSILAGTKYRGEFEERIKRIVEEVQNDSAIILVIDEIHTLVGAGAAEGAVD 305
Query: 313 AANILKPSLARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLR 372
AANILKP+LARG+ +CIGATT+DEYRK+IE+DPALERRFQPV V EP+V TI+IL GLR
Sbjct: 306 AANILKPALARGKFRCIGATTIDEYRKYIERDPALERRFQPVHVKEPTVGVTIEILLGLR 365
Query: 373 ERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARE 432
++E HH L Y D+A+ AA L+ ++I+DRFLPDKAID++DEAGSRVRL + +LP +
Sbjct: 366 SKFEEHHTLSYHDKAVEQAAILADKFIADRFLPDKAIDVLDEAGSRVRLENRRLPRGMKR 425
Query: 433 LEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQI-----SALVDKGKEMSKAETEA 487
L KEL+ ++K E+++ DF+ A +L D EM+++ I S L ++ +++ E +
Sbjct: 426 LLKELQDTLRDKEESIKEHDFDIAKQLVDHEMEVRTHIRIMKQSILTNETLGLARKEIDT 485
Query: 488 GDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAI 547
V E D+ +++ WTGIPV K+S ES RLL MEETLH+R+IGQ A+ ++S+AI
Sbjct: 486 ------VLEGDVAEVIAGWTGIPVNKISDSESKRLLTMEETLHERLIGQHHAIVSVSKAI 539
Query: 548 RRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVS 607
RRARVGL+NP+RPIASFIF+GPTGVGK+EL KAL+ Y FG+E++MIRLDMSE+ME+HTV+
Sbjct: 540 RRARVGLRNPDRPIASFIFAGPTGVGKTELTKALSEYMFGNEDSMIRLDMSEYMEKHTVA 599
Query: 608 KLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKG 667
KLIGSPPGYVGY EGGQLTEAV+ +PY+VVL DE+EKAHPDVFN++LQIL+DGRLTDSKG
Sbjct: 600 KLIGSPPGYVGYNEGGQLTEAVQTKPYSVVLLDEVEKAHPDVFNLLLQILDDGRLTDSKG 659
Query: 668 RTVDFKNTLLIMTSNVGSSVIEKGG--------RRIGFDLDYDE-----------KDSS- 707
RT+DF+NT++IMT+N+G+ +IEK + F +D KDS+
Sbjct: 660 RTIDFRNTMIIMTTNLGAKIIEKESGIKPKTKQDKPAFRIDESGCLGWEPTPEPIKDSAL 719
Query: 708 YNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIEL 767
+ ++ LV EELK++FRPEFLNR+DE+IVF LTK ++ EI +M+K++ RL+ K++ L
Sbjct: 720 FEKVTELVNEELKEFFRPEFLNRIDEIIVFNHLTKYDIWEICGLMVKQLQKRLEEKELTL 779
Query: 768 QVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEG 815
+V R + EEGY+P YGARPLRRA+MRLLED++A++ L++ + G
Sbjct: 780 EVDVSVRNLLTEEGYDPVYGARPLRRAVMRLLEDTLAQQCLSKPLYPG 827
Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 52/78 (66%)
Query: 91 MFERFTEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIR 150
MFE+FTE AIKVIML+QEEARR+GHN++G+E LLLG++ + G+ AR L+ R
Sbjct: 1 MFEKFTEGAIKVIMLSQEEARRMGHNFVGTEQLLLGIIGQRHGIGARALKKQKVTLKKAR 60
Query: 151 TQVIRMVGESTEAVGAGV 168
++ +G T V + +
Sbjct: 61 REIELYIGRGTGFVASEI 78
>sp|P0A522|CLPC_MYCTU Probable ATP-dependent Clp protease ATP-binding subunit
OS=Mycobacterium tuberculosis GN=clpC PE=1 SV=1
Length = 848
Score = 823 bits (2125), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/739 (57%), Positives = 563/739 (76%), Gaps = 21/739 (2%)
Query: 95 FTEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRTQVI 154
FT +A KV+ L+ EA +LGHNYIG+EH+LLGL+REGEGVAA+VL LGA+ + +R QVI
Sbjct: 80 FTPRAKKVLELSLREALQLGHNYIGTEHILLGLIREGEGVAAQVLVKLGAELTRVRQQVI 139
Query: 155 RMVG-----ESTEAVGAGVGGGSSGNKMP-TLEEYGTNLTKLAEEGKLDPVVGRQPQIER 208
+++ E+ EA G GG S L+++G NLT A EGKLDPV+GR+ +IER
Sbjct: 140 QLLSGYQGKEAAEAGTGGRGGESGSPSTSLVLDQFGRNLTAAAMEGKLDPVIGREKEIER 199
Query: 209 VVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGT 268
V+Q+L RRTKNNP LIGEPGVGKTA+ EGLAQ I G+VP+T++ K++ TLD+G LVAG+
Sbjct: 200 VMQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQAIVHGEVPETLKDKQLYTLDLGSLVAGS 259
Query: 269 KYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQC 328
+YRG+FEERLKK+++EI +IILFIDE+HTL+GAGAAEGAIDAA+ILKP LARGELQ
Sbjct: 260 RYRGDFEERLKKVLKEINTRGDIILFIDELHTLVGAGAAEGAIDAASILKPKLARGELQT 319
Query: 329 IGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEAL 388
IGATTLDEYRK+IEKD ALERRFQPV+V EP+V+ TI+ILKGLR+RYE HH++ TD A+
Sbjct: 320 IGATTLDEYRKYIEKDAALERRFQPVQVGEPTVEHTIEILKGLRDRYEAHHRVSITDAAM 379
Query: 389 VSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAV 448
V+AA L+ +YI+DRFLPDKAIDLIDEAG+R+R+R P + RE ++++ + +EK A+
Sbjct: 380 VAAATLADRYINDRFLPDKAIDLIDEAGARMRIRRMTAPPDLREFDEKIAEARREKESAI 439
Query: 449 RGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVD---IQHIVSA 505
QDFEKA LRDRE L AQ + + + +GD+ VV EVD I ++
Sbjct: 440 DAQDFEKAASLRDREKTLVAQ--------RAEREKQWRSGDL-DVVAEVDDEQIAEVLGN 490
Query: 506 WTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFI 565
WTGIPV K++ E+ RLL+MEE LHKR+IGQ++AVKA+S+AIRR R GLK+P RP SFI
Sbjct: 491 WTGIPVFKLTEAETTRLLRMEEELHKRIIGQEDAVKAVSKAIRRTRAGLKDPKRPSGSFI 550
Query: 566 FSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQL 625
F+GP+GVGK+EL+KALA + FG ++A+I++DM EF +R T S+L G+PPGYVGY EGGQL
Sbjct: 551 FAGPSGVGKTELSKALANFLFGDDDALIQIDMGEFHDRFTASRLFGAPPGYVGYEEGGQL 610
Query: 626 TEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGS 685
TE VRR+P++VVLFDEIEKAH +++N +LQ+LEDGRLTD +GRTVDFKNT+LI TSN+G+
Sbjct: 611 TEKVRRKPFSVVLFDEIEKAHQEIYNSLLQVLEDGRLTDGQGRTVDFKNTVLIFTSNLGT 670
Query: 686 SVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEV 745
S I K +G ++ Y R+K V +ELK++FRPEFLNR+D++IVF QLT+ E+
Sbjct: 671 SDISKP---VGLGFSKGGGENDYERMKQKVNDELKKHFRPEFLNRIDDIIVFHQLTREEI 727
Query: 746 KEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSMAE 805
+ D+M+ V +LK+KD+ L +T+ + + + G++P GARPLRR I R +ED ++E
Sbjct: 728 IRMVDLMISRVAGQLKSKDMALVLTDAAKALLAKRGFDPVLGARPLRRTIQREIEDQLSE 787
Query: 806 KMLAREIKEGDSVIVDVDS 824
K+L E+ G V VDVD+
Sbjct: 788 KILFEEVGPGQVVTVDVDN 806
Score = 94.0 bits (232), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 43/73 (58%), Positives = 59/73 (80%)
Query: 91 MFERFTEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIR 150
MFERFT++A +V++LAQEEAR L HNYIG+EH+LLGL+ EGEGVAA+ LE+LG +R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKSLESLGISLEGVR 60
Query: 151 TQVIRMVGESTEA 163
+QV ++G+ +A
Sbjct: 61 SQVEEIIGQGQQA 73
>sp|P0A523|CLPC_MYCBO Probable ATP-dependent Clp protease ATP-binding subunit
OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
GN=clpC PE=3 SV=1
Length = 848
Score = 823 bits (2125), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/739 (57%), Positives = 563/739 (76%), Gaps = 21/739 (2%)
Query: 95 FTEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRTQVI 154
FT +A KV+ L+ EA +LGHNYIG+EH+LLGL+REGEGVAA+VL LGA+ + +R QVI
Sbjct: 80 FTPRAKKVLELSLREALQLGHNYIGTEHILLGLIREGEGVAAQVLVKLGAELTRVRQQVI 139
Query: 155 RMVG-----ESTEAVGAGVGGGSSGNKMP-TLEEYGTNLTKLAEEGKLDPVVGRQPQIER 208
+++ E+ EA G GG S L+++G NLT A EGKLDPV+GR+ +IER
Sbjct: 140 QLLSGYQGKEAAEAGTGGRGGESGSPSTSLVLDQFGRNLTAAAMEGKLDPVIGREKEIER 199
Query: 209 VVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGT 268
V+Q+L RRTKNNP LIGEPGVGKTA+ EGLAQ I G+VP+T++ K++ TLD+G LVAG+
Sbjct: 200 VMQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQAIVHGEVPETLKDKQLYTLDLGSLVAGS 259
Query: 269 KYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQC 328
+YRG+FEERLKK+++EI +IILFIDE+HTL+GAGAAEGAIDAA+ILKP LARGELQ
Sbjct: 260 RYRGDFEERLKKVLKEINTRGDIILFIDELHTLVGAGAAEGAIDAASILKPKLARGELQT 319
Query: 329 IGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEAL 388
IGATTLDEYRK+IEKD ALERRFQPV+V EP+V+ TI+ILKGLR+RYE HH++ TD A+
Sbjct: 320 IGATTLDEYRKYIEKDAALERRFQPVQVGEPTVEHTIEILKGLRDRYEAHHRVSITDAAM 379
Query: 389 VSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAV 448
V+AA L+ +YI+DRFLPDKAIDLIDEAG+R+R+R P + RE ++++ + +EK A+
Sbjct: 380 VAAATLADRYINDRFLPDKAIDLIDEAGARMRIRRMTAPPDLREFDEKIAEARREKESAI 439
Query: 449 RGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVD---IQHIVSA 505
QDFEKA LRDRE L AQ + + + +GD+ VV EVD I ++
Sbjct: 440 DAQDFEKAASLRDREKTLVAQ--------RAEREKQWRSGDL-DVVAEVDDEQIAEVLGN 490
Query: 506 WTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFI 565
WTGIPV K++ E+ RLL+MEE LHKR+IGQ++AVKA+S+AIRR R GLK+P RP SFI
Sbjct: 491 WTGIPVFKLTEAETTRLLRMEEELHKRIIGQEDAVKAVSKAIRRTRAGLKDPKRPSGSFI 550
Query: 566 FSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQL 625
F+GP+GVGK+EL+KALA + FG ++A+I++DM EF +R T S+L G+PPGYVGY EGGQL
Sbjct: 551 FAGPSGVGKTELSKALANFLFGDDDALIQIDMGEFHDRFTASRLFGAPPGYVGYEEGGQL 610
Query: 626 TEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGS 685
TE VRR+P++VVLFDEIEKAH +++N +LQ+LEDGRLTD +GRTVDFKNT+LI TSN+G+
Sbjct: 611 TEKVRRKPFSVVLFDEIEKAHQEIYNSLLQVLEDGRLTDGQGRTVDFKNTVLIFTSNLGT 670
Query: 686 SVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEV 745
S I K +G ++ Y R+K V +ELK++FRPEFLNR+D++IVF QLT+ E+
Sbjct: 671 SDISKP---VGLGFSKGGGENDYERMKQKVNDELKKHFRPEFLNRIDDIIVFHQLTREEI 727
Query: 746 KEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSMAE 805
+ D+M+ V +LK+KD+ L +T+ + + + G++P GARPLRR I R +ED ++E
Sbjct: 728 IRMVDLMISRVAGQLKSKDMALVLTDAAKALLAKRGFDPVLGARPLRRTIQREIEDQLSE 787
Query: 806 KMLAREIKEGDSVIVDVDS 824
K+L E+ G V VDVD+
Sbjct: 788 KILFEEVGPGQVVTVDVDN 806
Score = 94.0 bits (232), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 43/73 (58%), Positives = 59/73 (80%)
Query: 91 MFERFTEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIR 150
MFERFT++A +V++LAQEEAR L HNYIG+EH+LLGL+ EGEGVAA+ LE+LG +R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKSLESLGISLEGVR 60
Query: 151 TQVIRMVGESTEA 163
+QV ++G+ +A
Sbjct: 61 SQVEEIIGQGQQA 73
>sp|Q54316|HLYB_TREHY Hemolysin B OS=Treponema hyodysenteriae GN=tlyB PE=3 SV=1
Length = 828
Score = 758 bits (1957), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/732 (52%), Positives = 547/732 (74%), Gaps = 14/732 (1%)
Query: 101 KVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRTQVIRMVGES 160
K+I + EEAR L HNYIG+EHLLLGLLRE G A VL ++G + + +R ++++M+G +
Sbjct: 89 KLISRSAEEARALSHNYIGTEHLLLGLLREESGTAYNVLTSMGLELTILRQEILKMLGVA 148
Query: 161 TEAVGAGVGGGSSGN----KMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRR 216
+ + N K PTL+++ +LTK+A + LD V+GR+ ++ RVVQIL RR
Sbjct: 149 GSNISSMEQTSQEDNVKKVKTPTLDQFARDLTKMARDKALDRVIGRENEVMRVVQILSRR 208
Query: 217 TKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEE 276
KNNP L+GEPGVGKTAI EGLA++I + DVPD + K+V+TLD+ +VAGTKYRGEFEE
Sbjct: 209 KKNNPILLGEPGVGKTAIVEGLAEKIVAADVPDILLKKRVLTLDLSSVVAGTKYRGEFEE 268
Query: 277 RLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATTLDE 336
R+K ++ EIK++ II+FIDE+HTLIGAG AEGA+DAAN+LKP+L+RGE+QCIGATT++E
Sbjct: 269 RIKNIVLEIKKASNIIIFIDELHTLIGAGGAEGALDAANMLKPALSRGEIQCIGATTINE 328
Query: 337 YRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSY 396
Y+K+IEKD AL RRFQP+ V EPS+++TI+IL G++ +YE HHK++YTDEA+ +AA LS
Sbjct: 329 YKKYIEKDGALVRRFQPINVEEPSIEDTIEILNGIKGKYEEHHKVKYTDEAINAAAVLSK 388
Query: 397 QYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKA 456
+YI +R LPDKAIDLIDEAGSR RL + P+E ++LEK++ ++ ++K V Q+FE A
Sbjct: 389 RYIFERHLPDKAIDLIDEAGSRARLLNMTRPQEFKDLEKKIEELNQQKKRVVESQNFEDA 448
Query: 457 GELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVST 516
++RD L+ ++S + K E + + E DI+H++S T IP++++
Sbjct: 449 AKIRDEITSLQEELSK------KEEKCREEREKIETFIEEDDIRHVISEITNIPIKRLLN 502
Query: 517 DESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSE 576
ES RL+ MEE LH++V+GQ EA+ +IS+AIRR+R GLK RP+ SFIF GPTGVGK+
Sbjct: 503 SESKRLIGMEEELHQKVVGQKEAISSISKAIRRSRAGLKTSKRPLGSFIFLGPTGVGKTA 562
Query: 577 LAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTV 636
LAK L+ + FG +A+IR+DMSEFME+ VS+LIG+PPGYVGY EGG LTE VRR+PY++
Sbjct: 563 LAKVLSEFMFGDSDALIRIDMSEFMEKFAVSRLIGAPPGYVGYEEGGGLTEKVRRKPYSL 622
Query: 637 VLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIG 696
+LFDEIEKAHPDV N++LQ+LE+G+LTD+ GR VDF NT++I+TSN+G+ I KG +G
Sbjct: 623 ILFDEIEKAHPDVTNILLQVLEEGQLTDNFGRKVDFSNTIIIITSNLGARDIVKGS-SLG 681
Query: 697 FDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEV 756
F+ EKD+ N IK+ EELKQ F PEFLNR+D++IVF L+K ++K+I +IMLKE+
Sbjct: 682 FNAVGSEKDA--NDIKNFALEELKQNFNPEFLNRIDDIIVFHTLSKEDLKDIINIMLKEL 739
Query: 757 FDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGD 816
+ +K ++I + ++E + ++++G++ YGAR LRRAI + +ED ++ ++L I++GD
Sbjct: 740 NEAIKERNIVINLSEEAKNYIIDKGFDKKYGARSLRRAIQKEIEDYVSTEILFGNIEDGD 799
Query: 817 SVIVDVDSDGNV 828
++ VD +DG++
Sbjct: 800 TINVD-RNDGSL 810
Score = 56.6 bits (135), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 47/77 (61%), Gaps = 3/77 (3%)
Query: 91 MFE-RFTEKAIKVIML-AQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSN 148
MF+ T KA KVI L AQEEA+RL H+ + EH+LLGLL E E +A RVL L D
Sbjct: 1 MFQFHLTSKAKKVIELYAQEEAKRLNHDMVTPEHILLGLLYESEALATRVLMRLKIDLDR 60
Query: 149 IRTQV-IRMVGESTEAV 164
++ ++ MV ST V
Sbjct: 61 LKLELESAMVKSSTTKV 77
>sp|Q8DJ40|CLPB1_THEEB Chaperone protein ClpB 1 OS=Thermosynechococcus elongatus (strain
BP-1) GN=clpB1 PE=3 SV=1
Length = 871
Score = 747 bits (1928), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/785 (49%), Positives = 537/785 (68%), Gaps = 77/785 (9%)
Query: 101 KVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRTQVIRMVGES 160
K++ A+E ++ G +I EHL+L ++ + ++ +++G +R + ++ G
Sbjct: 90 KLLDRAEEARKQFGDEFISIEHLVLAFAQD-DRFGKKLFQDIGLSEKVLREAIQQIRGSQ 148
Query: 161 TEAVGAGVGGGSSGNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNN 220
V + K LE+YG +LT LA +GKLDPV+GR +I RV+QIL RRTKNN
Sbjct: 149 K------VTDQNPEGKYAALEKYGRDLTLLARQGKLDPVIGRDDEIRRVIQILSRRTKNN 202
Query: 221 PCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEERLKK 280
P LIGEPGVGKTAIAEGLAQRI + DVPD++ +++I LDMG L+AG KYRGEFEERLK
Sbjct: 203 PVLIGEPGVGKTAIAEGLAQRIVARDVPDSLRDRQLIALDMGALIAGAKYRGEFEERLKA 262
Query: 281 LMEEIKQSD-EIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATTLDEYRK 339
+++E+ S+ +IILFIDE+HT++GAGA +GA+DA N+LKP LARGEL+CIGATTLDEYRK
Sbjct: 263 VLKEVTDSNGQIILFIDEIHTVVGAGATQGAMDAGNLLKPMLARGELRCIGATTLDEYRK 322
Query: 340 HIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYI 399
+IEKD ALERRFQ V V +PSV++TI IL+GL+ERYEIHH ++ +D ALV+AA LS +YI
Sbjct: 323 YIEKDAALERRFQQVYVDQPSVEDTISILRGLKERYEIHHGVKISDTALVAAATLSARYI 382
Query: 400 SDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQI-------TKEKNEAVRGQ- 451
SDRFLPDKAIDL+DEA +++++ PEE E+++++ Q+ KE + A R +
Sbjct: 383 SDRFLPDKAIDLVDEAAAKLKMEITSKPEELDEIDRKILQLEMERLSLQKETSAASRDRL 442
Query: 452 -------------------DFEKAGELRDREMDLKAQISA-------------------- 472
++ E+ DR +K +I
Sbjct: 443 EKLERELADLKEEQSRLNAQWQAEKEVIDRLQSIKEEIEKVNIEIQQAERNYDLNRAAEL 502
Query: 473 ----LVDKGKEMSKAETEAGDVG--------PVVTEVDIQHIVSAWTGIPVEKVSTDESD 520
L + K++++AE + ++ VTE DI I+S WTGIPV K+ E+
Sbjct: 503 KYGKLTELHKKLAEAEAKLREIQVGGRSLLRDEVTEADIAEIISKWTGIPVSKLVESEAQ 562
Query: 521 RLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKA 580
+LL +EE LHKRV+GQDEAV A++ AI+R+R GL +PNRPIASFIF GPTGVGK+ELAKA
Sbjct: 563 KLLHLEEELHKRVVGQDEAVSAVAEAIQRSRAGLADPNRPIASFIFLGPTGVGKTELAKA 622
Query: 581 LAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFD 640
LAA+ F +EEA++R+DMSE+ME+H VS+LIG+PPGYVGY EGGQLTEA+RRRPY VVLFD
Sbjct: 623 LAAFMFDTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYDEGGQLTEAIRRRPYAVVLFD 682
Query: 641 EIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLD 700
EIEKAHPDVFN+ LQIL+DGR+TDS+GRTVDFKNT++IMTSN+GS I LD
Sbjct: 683 EIEKAHPDVFNVFLQILDDGRVTDSQGRTVDFKNTIIIMTSNIGSQYI----------LD 732
Query: 701 YDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRL 760
DS Y+ + + V E ++ +FRPEFLNR+DE I+F L K ++++I + ++ + RL
Sbjct: 733 VAGDDSRYSEMYNRVMEAMRAHFRPEFLNRVDEFIIFHSLRKDQLRQIVQLQVQRLQQRL 792
Query: 761 KTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIV 820
+ I L +TE+ + + E GY+P YGARPL+RAI + LE +A+ +L + +GD+++V
Sbjct: 793 SDRHITLSLTEKAIDFLAEVGYDPVYGARPLKRAIQKQLETPIAKAILRGDFFDGDTILV 852
Query: 821 DVDSD 825
DV D
Sbjct: 853 DVGED 857
Score = 37.0 bits (84), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 94 RFTEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIR 150
+FTEKA I + A++ H + SEHL+ LL E EG+A ++ + G IR
Sbjct: 8 QFTEKAWAAIARTPDLAKQAQHQNLESEHLMKSLL-EQEGLATQIFQKAGCSVQRIR 63
>sp|Q9PKA8|CLPC_CHLMU Probable ATP-dependent Clp protease ATP-binding subunit
OS=Chlamydia muridarum (strain MoPn / Nigg) GN=clpC PE=3
SV=1
Length = 870
Score = 746 bits (1925), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/733 (50%), Positives = 519/733 (70%), Gaps = 34/733 (4%)
Query: 106 AQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRTQVIRMV-------- 157
A EEA L HNY+G+EHLLLG+L + +GVA +VLENL DP IR ++++ +
Sbjct: 108 ANEEASILEHNYVGTEHLLLGILNQADGVALQVLENLHIDPKEIRKEILKELETFNLQLP 167
Query: 158 ----------------GESTEAVGAGVGGGSSGNKMPTLEEYGTNLTKLAEEGKLDPVVG 201
+ ++G GG K+ L+ YG +LT++ +E +LDPV+G
Sbjct: 168 PSSSITPRNTNSSSSSSSKSSSLGGHSLGGDKPEKLSALKAYGYDLTEMFKEARLDPVIG 227
Query: 202 RQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDM 261
R ++ER++ IL RR KNNP LIGE GVGKTAI EGLAQ+I SG+VP+ + K++ITLD+
Sbjct: 228 RSAEVERLILILCRRRKNNPVLIGEAGVGKTAIVEGLAQKIVSGEVPEALRKKRLITLDL 287
Query: 262 GLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSL 321
L++AGTKYRG+FEER+K +M+E+++ I+LFIDE+HT++GAGAAEGAIDA++ILKP+L
Sbjct: 288 ALMIAGTKYRGQFEERIKAVMDEVRKHGNILLFIDELHTIVGAGAAEGAIDASHILKPAL 347
Query: 322 ARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKL 381
ARGE+QCIGATTLDEYRKHIEKD ALERRFQ + V PSVDET++IL+GL+++YE HH +
Sbjct: 348 ARGEIQCIGATTLDEYRKHIEKDAALERRFQKIVVQPPSVDETVEILRGLKKKYEEHHNV 407
Query: 382 RYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQIT 441
TDEALV+AA+LS QY+ RFLPDKAIDL+DEAG+RVR+ P E LE E+
Sbjct: 408 FITDEALVAAAKLSDQYVHGRFLPDKAIDLLDEAGARVRVNTMGQPSELLRLEAEIESTK 467
Query: 442 KEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQH 501
+ K +A+ Q++EKA LRD E L+ ++S + K+ ++ E V PV E +
Sbjct: 468 QAKEQAIGTQEYEKAASLRDEEKKLREKLSNM----KQQWESNKEEHQV-PVDEEA-VAQ 521
Query: 502 IVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPI 561
+VS TGIP +++ ES++LL +E TL K+VIGQD+AV +I RAIRR+R G+K+PNRP+
Sbjct: 522 VVSVQTGIPAARLTEAESEKLLMLENTLQKKVIGQDQAVASICRAIRRSRTGIKDPNRPM 581
Query: 562 ASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTE 621
SF+F GPTGVGK+ LA+ +A FG E+++I++DMSE+ME+ +K++GSPPGYVG+ E
Sbjct: 582 GSFLFLGPTGVGKTLLAQQIAVEMFGGEDSLIQVDMSEYMEKFAATKMMGSPPGYVGHEE 641
Query: 622 GGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTS 681
GG LTE VRRRPY VVLFDEIEKAHPD+ ++MLQILE GRLTDS GR +DF+NT++IMTS
Sbjct: 642 GGHLTEQVRRRPYCVVLFDEIEKAHPDIMDLMLQILEQGRLTDSFGRKIDFRNTIIIMTS 701
Query: 682 NVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLT 741
N+G+ +I K G IGF L Y IK + +K++ +PEF+NRLDE ++F+ L
Sbjct: 702 NLGADLIRKTG-EIGFGL---RSHMDYGVIKEKIDAAVKKHLKPEFINRLDESVIFKPLE 757
Query: 742 KLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLED 801
K + EI + + ++ RL+ + L + + +V++G++P GARPLRR + + LED
Sbjct: 758 KEALSEIIHLEINKLGSRLQNHQMALNIPDSVVSFLVDKGHSPEMGARPLRRVVEQYLED 817
Query: 802 SMAEKMLAREIKE 814
+AE +L ++
Sbjct: 818 PLAEMLLKESCRQ 830
Score = 63.5 bits (153), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 53/72 (73%)
Query: 91 MFERFTEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIR 150
MFE+FT +A +VI LA++EA+RL HNY+G+EH+LLGLL+ G+GVA VL LG D +
Sbjct: 17 MFEKFTNRAKQVIKLAKKEAQRLNHNYLGTEHILLGLLKLGQGVAVNVLRTLGVDFDTAK 76
Query: 151 TQVIRMVGESTE 162
+V R++G E
Sbjct: 77 NEVERLIGYGPE 88
>sp|Q74FF1|CLPB_GEOSL Chaperone protein ClpB OS=Geobacter sulfurreducens (strain ATCC
51573 / DSM 12127 / PCA) GN=clpB PE=3 SV=1
Length = 865
Score = 743 bits (1918), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/792 (49%), Positives = 542/792 (68%), Gaps = 78/792 (9%)
Query: 101 KVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRTQVIRMVGES 160
+++ AQ EA + ++ +EHLLLG + + AAR L + G N+ ++ + G
Sbjct: 90 RILDAAQREADTMKDEFVSTEHLLLGFFADRQCAAARALLDAGVSRDNVLAALMEIRG-- 147
Query: 161 TEAVGAGVGGGSSGNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNN 220
G V + + L +Y +LT LA +GKLDPV+GR +I RV+Q+L RRTKNN
Sbjct: 148 ----GERVTDQNPEDTYQALAKYARDLTDLARQGKLDPVIGRDDEIRRVLQVLSRRTKNN 203
Query: 221 PCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEERLKK 280
P LIGEPGVGKTAI EGLAQRI SGDVP+T++ K+++ LDMG L+AG KYRGEFEERLK
Sbjct: 204 PVLIGEPGVGKTAIVEGLAQRIVSGDVPETLKDKRLVALDMGALIAGAKYRGEFEERLKA 263
Query: 281 LMEEIKQSD-EIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATTLDEYRK 339
++ E+ +S+ ++ILFIDE+HTL+GAGAAEGA+DA+N+LKP+LARGEL CIGATTL+EYRK
Sbjct: 264 VIREVAKSEGKVILFIDELHTLVGAGAAEGAMDASNMLKPALARGELHCIGATTLNEYRK 323
Query: 340 HIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYI 399
+IEKD ALERRFQ V EPSV++TI IL+GL+E+YE +H +R D A+++AA LS +YI
Sbjct: 324 YIEKDAALERRFQQVYTGEPSVEDTIAILRGLKEKYENYHGIRIKDSAIIAAATLSDRYI 383
Query: 400 SDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVR-GQD---FEK 455
+DRFLPDKAIDLIDEA SR+R+ +P E E+E+ + Q+ EK +R QD E+
Sbjct: 384 TDRFLPDKAIDLIDEAASRLRIEIDSMPTEIDEVERRIIQLEIEKQALLRESQDPHSLER 443
Query: 456 AGELRD-----------------REMDLKAQISA----LVDKGKEMSKAETEA------- 487
+L D RE D+ ++S+ L +K +E KAE E
Sbjct: 444 LKKLADELEELKAKSAELKGHWQREKDIIGRVSSLRQRLEEKREEAKKAEREGNLARTAE 503
Query: 488 ---GDVGPVVTEV--------DIQ----------------HIVSAWTGIPVEKVSTDESD 520
G++ + E+ DI+ IVS WTGIPV ++ E+D
Sbjct: 504 IRYGEIPAIEKEIADRSAELEDIRKEGKMLPEEVDGELVAEIVSRWTGIPVSRMMEGEAD 563
Query: 521 RLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKA 580
+L+ ME+ L RV+GQDEA+ ++ AIRRAR GL +PNRPI SF+F GPTGVGK+E AKA
Sbjct: 564 KLVHMEDRLITRVVGQDEALVLVANAIRRARSGLSDPNRPIGSFLFLGPTGVGKTETAKA 623
Query: 581 LAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFD 640
LA + F ++A++R+DMSE+ E+HTV++LIG+PPGYVGY EGGQLTEAVRRRPY++VLFD
Sbjct: 624 LAEFLFNDDQAIVRIDMSEYQEKHTVARLIGAPPGYVGYEEGGQLTEAVRRRPYSIVLFD 683
Query: 641 EIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLD 700
EIEKAHP+VFN++LQ+L+DGRLTD +GRTVDF+NT++IMTSN+GS I++ G
Sbjct: 684 EIEKAHPEVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQWIQQYG-------- 735
Query: 701 YDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRL 760
S Y R+K++VTE LK+ F+PEFLNR+DE++++ L ++K+I DI ++ + RL
Sbjct: 736 ----SSDYARMKAMVTETLKEGFKPEFLNRIDEIVIYHALPLEQIKKIVDIQVECLKQRL 791
Query: 761 KTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIV 820
+ I L+++++ RE + EGY+P+YGARPL+R I R ++D +A +L + +EGD+V V
Sbjct: 792 ADRRIVLELSDKAREYLSREGYDPAYGARPLKRTIQRKIQDPLALALLEGKFQEGDTVRV 851
Query: 821 DVDSDGNVTVLN 832
D+ G V+
Sbjct: 852 DLSVSGEELVIT 863
>sp|P42762|CLPD_ARATH Chaperone protein ClpD, chloroplastic OS=Arabidopsis thaliana
GN=CLPD PE=1 SV=1
Length = 945
Score = 740 bits (1911), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/771 (50%), Positives = 526/771 (68%), Gaps = 46/771 (5%)
Query: 95 FTEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRTQ-- 152
F+ +V A E +R + YI EH+ +GL +G A RVL+ LGA+ N+ T
Sbjct: 168 FSISTKRVFEAAVEYSRTMDCQYIAPEHIAVGLFTVDDGSAGRVLKRLGAN-MNLLTAAA 226
Query: 153 VIRMVGE--------------------STEAVGAGVGGGSSGNKMPTLEEYGTNLTKLAE 192
+ R+ GE S G+G GG + N LE++ +LT A
Sbjct: 227 LTRLKGEIAKDGREPSSSSKGSFESPPSGRIAGSGPGGKKAKN---VLEQFCVDLTARAS 283
Query: 193 EGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIE 252
EG +DPV+GR+ +++RV+QIL RRTKNNP L+GE GVGKTAIAEGLA IA P +
Sbjct: 284 EGLIDPVIGREKEVQRVIQILCRRTKNNPILLGEAGVGKTAIAEGLAISIAEASAPGFLL 343
Query: 253 GKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAE---- 308
K++++LD+GLL+AG K RGE E R+ L+ E+K+S ++ILFIDEVHTLIG+G
Sbjct: 344 TKRIMSLDIGLLMAGAKERGELEARVTALISEVKKSGKVILFIDEVHTLIGSGTVGRGNK 403
Query: 309 -GAIDAANILKPSLARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQI 367
+D AN+LKPSL RGELQCI +TTLDE+R EKD AL RRFQPV + EPS ++ ++I
Sbjct: 404 GSGLDIANLLKPSLGRGELQCIASTTLDEFRSQFEKDKALARRFQPVLINEPSEEDAVKI 463
Query: 368 LKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLP 427
L GLRE+YE HH +YT EA+ +A LS +YI+DRFLPDKAIDLIDEAGSR R+ +
Sbjct: 464 LLGLREKYEAHHNCKYTMEAIDAAVYLSSRYIADRFLPDKAIDLIDEAGSRARIEAFR-- 521
Query: 428 EEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQIS---ALVDKGKEM---S 481
++ E + ++K N+ Q+ + + + + + + A+ D+ E+ S
Sbjct: 522 ---KKKEDAICILSKPPND--YWQEIKTVQAMHEVVLSSRQKQDDGDAISDESGELVEES 576
Query: 482 KAETEAGDVGPV-VTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAV 540
AGD P+ V DI + S W+GIPV++++ DE L+ +E+ L RV+GQDEAV
Sbjct: 577 SLPPAAGDDEPILVGPDDIAAVASVWSGIPVQQITADERMLLMSLEDQLRGRVVGQDEAV 636
Query: 541 KAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEF 600
AISRA++R+RVGLK+P+RPIA+ +F GPTGVGK+EL KALAA YFGSEE+M+RLDMSE+
Sbjct: 637 AAISRAVKRSRVGLKDPDRPIAAMLFCGPTGVGKTELTKALAANYFGSEESMLRLDMSEY 696
Query: 601 MERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDG 660
MERHTVSKLIGSPPGYVG+ EGG LTEA+RRRP+TVVLFDEIEKAHPD+FN++LQ+ EDG
Sbjct: 697 MERHTVSKLIGSPPGYVGFEEGGMLTEAIRRRPFTVVLFDEIEKAHPDIFNILLQLFEDG 756
Query: 661 RLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGR-RIGFDLDYDEKDSSYNRIKSLVTEEL 719
LTDS+GR V FKN L+IMTSNVGS I KG IGF LD DE+ +SY +K+LV EEL
Sbjct: 757 HLTDSQGRRVSFKNALIIMTSNVGSLAIAKGRHGSIGFILDDDEEAASYTGMKALVVEEL 816
Query: 720 KQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVE 779
K YFRPE LNR+DE+++FRQL K ++ EI ++ML+++ RL + L+V+E +E + +
Sbjct: 817 KNYFRPELLNRIDEIVIFRQLEKAQMMEILNLMLQDLKSRLVALGVGLEVSEPVKELICK 876
Query: 780 EGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDVDSDGNVTV 830
+GY+P+YGARPLRR + ++ED ++E LA K GD+ V +D GN +V
Sbjct: 877 QGYDPAYGARPLRRTVTEIVEDPLSEAFLAGSFKPGDTAFVVLDDTGNPSV 927
Score = 53.9 bits (128), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 35/43 (81%)
Query: 88 VKAMFERFTEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLRE 130
+ A+FERFTE+AI+ I+ +Q+EA+ LG + + ++HLLLGL+ E
Sbjct: 76 ISAVFERFTERAIRAIIFSQKEAKSLGKDMVYTQHLLLGLIAE 118
>sp|O84288|CLPC_CHLTR Probable ATP-dependent Clp protease ATP-binding subunit
OS=Chlamydia trachomatis (strain D/UW-3/Cx) GN=clpC PE=3
SV=1
Length = 854
Score = 740 bits (1910), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/732 (50%), Positives = 519/732 (70%), Gaps = 33/732 (4%)
Query: 106 AQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRTQVIRMV-------- 157
A EEA L HNY+G+EHLLLG+L + +GVA +VLENL DP IR ++++ +
Sbjct: 92 ANEEAALLEHNYVGTEHLLLGILNQSDGVALQVLENLHVDPKEIRKEILKELETFNLQLP 151
Query: 158 ---------------GESTEAVGAGVGGGSSGNKMPTLEEYGTNLTKLAEEGKLDPVVGR 202
+S+ +G GG K+ L+ YG +LT++ +E +LDPV+GR
Sbjct: 152 PSSSITPRNTNSSSSSKSSSPLGGHTLGGDKPEKLSALKAYGYDLTEMFKESRLDPVIGR 211
Query: 203 QPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMG 262
++ER++ IL RR KNNP L+GE GVGKTAI EGLAQ+I SG+VP+ + K++ITLD+
Sbjct: 212 SAEVERLILILCRRRKNNPVLVGEAGVGKTAIVEGLAQKIVSGEVPEALRKKRLITLDLA 271
Query: 263 LLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLA 322
L++AGTKYRG+FEER+K +M+E+++ I+LFIDE+HT++GAGAAEGAIDA++ILKP+LA
Sbjct: 272 LMIAGTKYRGQFEERIKAVMDEVRKHGNILLFIDELHTIVGAGAAEGAIDASHILKPALA 331
Query: 323 RGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLR 382
RGE+QCIGATTLDEYRKHIEKD ALERRFQ + V PSVDET++IL+GL+++YE HH +
Sbjct: 332 RGEIQCIGATTLDEYRKHIEKDAALERRFQKIVVQPPSVDETVEILRGLKKKYEEHHNVF 391
Query: 383 YTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITK 442
TDEALV+AA+LS QY+ RFLPDKAIDL+DEAG+RVR+ P + LE E+ + +
Sbjct: 392 ITDEALVAAAKLSDQYVHGRFLPDKAIDLLDEAGARVRVNTMGQPSDLVRLEAEIEKTKQ 451
Query: 443 EKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHI 502
K +A+ Q++EKA LRD E L+ ++ + K+ ++ E V PV E + +
Sbjct: 452 AKEQAIGTQEYEKAASLRDEEKKLREKLGNM----KQQWESNKEEHQV-PVDEEA-VAQV 505
Query: 503 VSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIA 562
VS TGIP +++ ES++LL +E TL K+VIGQ +AV +I RAIRR+R G+K+PNRP+
Sbjct: 506 VSVQTGIPAARLTEAESEKLLTLETTLQKKVIGQSQAVASICRAIRRSRTGIKDPNRPMG 565
Query: 563 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEG 622
SF+F GPTGVGK+ LA+ +A FG E+++I++DMSE+ME+ +K++GSPPGYVG+ EG
Sbjct: 566 SFLFLGPTGVGKTLLAQQIAIEMFGGEDSLIQVDMSEYMEKFAATKMMGSPPGYVGHEEG 625
Query: 623 GQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSN 682
G LTE VRRRPY VVLFDEIEKAHPD+ ++MLQILE GRLTDS GR +DF+NT++IMTSN
Sbjct: 626 GHLTEQVRRRPYCVVLFDEIEKAHPDIMDLMLQILEQGRLTDSFGRKIDFRNTIIIMTSN 685
Query: 683 VGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTK 742
+G+ +I K G IGF L Y IK + +K++ +PEF+NRLDE ++F+ L K
Sbjct: 686 LGADLIRKSG-EIGFGL---RSHMDYAVIKEKIDAAVKKHLKPEFINRLDESVIFKPLEK 741
Query: 743 LEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDS 802
+ EI + + ++ RL+ ++L + + +V +G++P GARPLRR + + LED
Sbjct: 742 EALSEIIHLEINKLGSRLQNYQMDLNIPDSVISFLVTKGHSPEMGARPLRRVVEQYLEDP 801
Query: 803 MAEKMLAREIKE 814
+AE +L ++
Sbjct: 802 LAEMLLKESCRQ 813
Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 54/77 (70%)
Query: 91 MFERFTEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIR 150
MFE+FT +A +VI LA++EA+RL HNY+G+EH+LLGLL+ G+GVA VL LG D +
Sbjct: 1 MFEKFTNRAKQVIKLAKKEAQRLNHNYLGTEHILLGLLKLGQGVAVNVLRTLGVDFDTAK 60
Query: 151 TQVIRMVGESTEAVGAG 167
+V R++G E G
Sbjct: 61 HEVERLIGYGPEIQVCG 77
>sp|O87444|CLPB_PLEBO Chaperone protein ClpB OS=Plectonema boryanum GN=clpB PE=2 SV=2
Length = 873
Score = 737 bits (1902), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/794 (50%), Positives = 530/794 (66%), Gaps = 96/794 (12%)
Query: 98 KAIKVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRTQVIRMV 157
+A ++ A+E ++ ++I EHLLLG ++ A + E D + +R + ++
Sbjct: 88 RADALLXRAEEYRKQFEDSFISIEHLLLGYAQDSRFGKALLSEFRYPDEAKLRNAIEQVR 147
Query: 158 GESTEAVGAGVGGGSSGNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRT 217
G V + NK +LE+YG +LT+ A EGKLDPV+GR +I R +QIL RRT
Sbjct: 148 GNQK------VTDQTPENKYESLEKYGRDLTQYAREGKLDPVIGRDDEIRRTIQILSRRT 201
Query: 218 KNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEER 277
KNNP LIGEPGVGKTAIAEGLAQRI SGDVP +++ +K+I LDMG L+AG KYRGEFEER
Sbjct: 202 KNNPVLIGEPGVGKTAIAEGLAQRILSGDVPQSLKDRKLIALDMGALIAGAKYRGEFEER 261
Query: 278 LKKLMEEIKQS-DEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATTLDE 336
LK +++E+ S IILFIDE+HT++GAGA +GA+DA N+LKP LARGEL+CIGATTLDE
Sbjct: 262 LKAVLKEVTDSRGNIILFIDEIHTVVGAGATQGAMDAGNLLKPMLARGELRCIGATTLDE 321
Query: 337 YRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSY 396
YRK+IEKD ALERRFQ V V +PSV++TI IL+GL+ERYE+HH ++ +D ALV+AA LS
Sbjct: 322 YRKYIEKDAALERRFQQVFVDQPSVEDTISILRGLKERYEVHHGVKISDSALVAAATLST 381
Query: 397 QYISDRFLPDKAIDLIDEA--------------------------------------GSR 418
+YISDRFLP KAIDL+DEA GSR
Sbjct: 382 RYISDRFLPSKAIDLVDEAAAKLKMEITSKPEELDEVDRKVLQLEMERLSLQKENDAGSR 441
Query: 419 VRLR----------------HAQLPEEA------RELEKELRQITKEKNEAVRGQDFEKA 456
RL +AQ E ++L++E+ ++ E +A R D +A
Sbjct: 442 DRLERLERELADFKEDQSKLNAQWQAEKSVITDLQKLKEEIDRVNLEIQQAERDYDLNRA 501
Query: 457 GELR-------DREMD-LKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTG 508
EL+ +R+++ ++Q+S + G + + E V E DI I+S WTG
Sbjct: 502 AELKYGKLNELNRKVEETESQLSQIQKSGATLLREE---------VLESDIAEIISKWTG 552
Query: 509 IPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSG 568
IPV K+ E +LL++++ LH+RVIGQDEAV A+S AI+R+R GL +PNRP ASFIF G
Sbjct: 553 IPVSKLVESEMQKLLQLDDVLHQRVIGQDEAVTAVSDAIQRSRAGLSDPNRPTASFIFLG 612
Query: 569 PTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEA 628
PTGVGK+ELAKALAA+ F +EEAM+R+DMSE+ME+H+VS+LIG+PPGYVGY EGGQLTEA
Sbjct: 613 PTGVGKTELAKALAAFLFDTEEAMVRIDMSEYMEKHSVSRLIGAPPGYVGYEEGGQLTEA 672
Query: 629 VRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVI 688
VRRRPY+V+LFDEIEKAHPDVFN+MLQIL+DGR+TDS+GRTVDFKNT++IMTSN+GS I
Sbjct: 673 VRRRPYSVILFDEIEKAHPDVFNVMLQILDDGRVTDSQGRTVDFKNTIIIMTSNIGSQYI 732
Query: 689 EKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEI 748
+Y D Y I S V E + FRPEFLNR+DE+I+F L K +++EI
Sbjct: 733 ----------FEYGGDDDRYEEILSRVMEAMLSNFRPEFLNRIDEIIIFHSLQKAQLREI 782
Query: 749 ADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSMAEKML 808
I + RL K + L++++ + + EG++P YGARPL+RAI R LE ++A+++L
Sbjct: 783 VKIQTHRLESRLARK-MSLKLSDAALD-FLAEGFDPVYGARPLKRAIQRELETTIAKEIL 840
Query: 809 AREIKEGDSVIVDV 822
EGD++ VDV
Sbjct: 841 RSNFTEGDTIFVDV 854
Score = 34.7 bits (78), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 93 ERFTEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRTQ 152
E+FTEK + I QE ++ I +EHL+ LL E +G+A + L +R +
Sbjct: 7 EKFTEKVWEAIYRTQEMYKQAQQQQIETEHLMKALL-EQDGLAISIFNKLAVPVDRVRDR 65
Query: 153 VIRMVGESTEAVGAGVG 169
+ + G+G
Sbjct: 66 TDDFIRRQPKVSGSGTS 82
>sp|P53533|CLPB1_SYNE7 Chaperone protein ClpB 1 OS=Synechococcus elongatus (strain PCC
7942) GN=clpB1 PE=2 SV=3
Length = 874
Score = 735 bits (1897), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 390/774 (50%), Positives = 524/774 (67%), Gaps = 79/774 (10%)
Query: 113 LGHNYIGSEHLLLGLLREGEGVAARVL-ENLGADPSNIRTQVIRMVGESTEAVGAGVGGG 171
G +I EHL+L R+ R+L + D +R Q+I+ + S + G
Sbjct: 103 FGDEFISVEHLILSFPRDSR--FGRLLSQEFKVDEKQLR-QIIQQIRGSQKVTDQNPEG- 158
Query: 172 SSGNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGK 231
K LE+YG +LT++A GKLDPV+GR +I R +QIL RRTKNNP LIGEPGVGK
Sbjct: 159 ----KYEALEKYGRDLTEMARRGKLDPVIGRDDEIRRTIQILSRRTKNNPVLIGEPGVGK 214
Query: 232 TAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEI 291
TAIAEGLAQRI +GDVP +++ +++I LDMG L+AG K+RGEFEERLK +++E+ S+ I
Sbjct: 215 TAIAEGLAQRIINGDVPQSLKDRRLIALDMGALIAGAKFRGEFEERLKAVLKEVTDSEGI 274
Query: 292 I-LFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATTLDEYRKHIEKDPALERR 350
I LFIDE+HT++GAGA +G++DA N+LKP LARGEL+CIGATTLDEYR++IEKD ALERR
Sbjct: 275 IILFIDEIHTVVGAGAVQGSMDAGNLLKPMLARGELRCIGATTLDEYRQYIEKDAALERR 334
Query: 351 FQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAID 410
FQ V V +P+V++TI IL+GL+ERYE+HH +R +D ALV+AA LS +YISDRFLPDKAID
Sbjct: 335 FQQVFVDQPTVEDTISILRGLKERYEVHHGVRISDNALVAAAVLSTRYISDRFLPDKAID 394
Query: 411 LIDEAGSRVRLRHAQLPEEARELEKELRQI-------TKEKNEAV--RGQDFEKA-GELR 460
L+DE+ +R+++ PEE E+++++ Q+ KE + A R Q EK +L+
Sbjct: 395 LVDESAARLKMEITSKPEELDEIDRKILQLEMERLSLQKESDLASQERLQRLEKELADLK 454
Query: 461 DREMDLKAQISALVDKGKEMSKAETEAGDVGPV--------------------------- 493
+ + L +Q A D ++ + E V +
Sbjct: 455 EEQRSLSSQWQAEKDVITDIQSVKEEIDQVNLLIQQAERDYDLNKAAELKYGKLTELQRK 514
Query: 494 ----------------------VTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHK 531
VTEVDI I+S WTGIPV K+ E +LL ++E LH+
Sbjct: 515 LNEMEGGLATTHTSGKSLLREEVTEVDIAEIISKWTGIPVSKLVESEMQKLLNLDEELHQ 574
Query: 532 RVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEA 591
RVIGQ+EAV A++ AI+R+R GL +P RPIASFIF GPTGVGK+ELAKALAAY F +E+A
Sbjct: 575 RVIGQEEAVSAVADAIQRSRAGLSDPKRPIASFIFLGPTGVGKTELAKALAAYLFDTEDA 634
Query: 592 MIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFN 651
MIR+DMSE+ME+H VS+LIG+PPGYVGY EGGQLTEAVRRRPY+V+LFDEIEKAHPDVFN
Sbjct: 635 MIRIDMSEYMEKHAVSRLIGAPPGYVGYDEGGQLTEAVRRRPYSVILFDEIEKAHPDVFN 694
Query: 652 MMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRI 711
+MLQIL+DGR+TDS+GRTVDFKNT+LI+TSN+GS I LD DS Y +
Sbjct: 695 VMLQILDDGRVTDSRGRTVDFKNTILILTSNIGSQYI----------LDVAGDDSRYEEM 744
Query: 712 KSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTE 771
+S VTE L+ FRPEFLNR+DE I+F L K ++++I I L + +RL + + L ++
Sbjct: 745 RSRVTEALRANFRPEFLNRVDETIIFHSLRKDQLQQIVRIQLHRLEERLSDRKLSLSMSP 804
Query: 772 RFRERVVEEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDVDSD 825
+ +VE G++P YGARPL+R I R LE ++A+ +L + +GD++ V V+++
Sbjct: 805 EAIDFLVEIGFDPVYGARPLKRVIQRELETAIAKAILRGQFSDGDTIQVAVENE 858
Score = 40.0 bits (92), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 94 RFTEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRTQV 153
+FTEKA + I+ + A++ H I SEHL L LL+E G+A +L+ G + + ++
Sbjct: 8 QFTEKAWEAIVRTTDVAKQAQHQQIESEHLFLALLQE-PGLALNILKKAGLEAAQLQQFT 66
Query: 154 IRMVGESTEAVG 165
R + + G
Sbjct: 67 ERFIARQPKVSG 78
>sp|Q7CU92|CLPB_AGRT5 Chaperone protein ClpB OS=Agrobacterium tumefaciens (strain C58 /
ATCC 33970) GN=clpB PE=3 SV=2
Length = 874
Score = 734 bits (1896), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/788 (49%), Positives = 533/788 (67%), Gaps = 74/788 (9%)
Query: 95 FTEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRTQVI 154
T KV A++ A++ G +++ E LL L E + L+ GA + QVI
Sbjct: 83 LTAPLAKVFSTAEDLAKKAGDSFVTVERLLQALAIESSASTSASLKKAGATAQAL-NQVI 141
Query: 155 RMVGESTEAVGAGVGGGSSGNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILG 214
+ + A A G L++Y +LT+ A EG+LDPV+GR +I R +Q+L
Sbjct: 142 NDIRKGRTADSANAEQG-----FDALKKYARDLTEEAREGRLDPVIGRDDEIRRTIQVLS 196
Query: 215 RRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEF 274
RRTKNNP LIGEPGVGKTAIAEGLA RI +GDVP++++ KK++ LDMG L+AG KYRGEF
Sbjct: 197 RRTKNNPVLIGEPGVGKTAIAEGLALRIVNGDVPESLKDKKLMALDMGALIAGAKYRGEF 256
Query: 275 EERLKKLMEEIK-QSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATT 333
EERLK ++ E++ ++ IILFIDE+HTL+GAG A+GA+DA+N+LKP+LARGEL C+GATT
Sbjct: 257 EERLKAVLNEVQAENGGIILFIDEMHTLVGAGKADGAMDASNLLKPALARGELHCVGATT 316
Query: 334 LDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQ 393
LDEYRKH+EKDPAL RRFQPV V EP+V++TI IL+GL+E+YE HHK+R +D ALV+AA
Sbjct: 317 LDEYRKHVEKDPALARRFQPVLVDEPNVEDTISILRGLKEKYEQHHKVRISDSALVAAAT 376
Query: 394 LSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQI------------- 440
LS +YI+DRFLPDKAIDL+DEA SR+R++ PEE EL++ + Q+
Sbjct: 377 LSNRYITDRFLPDKAIDLMDEAASRLRMQVDSKPEELDELDRRIIQLKIEREALKQETDQ 436
Query: 441 ---------------TKEKNEAVRG------QDFEKAGELRDREMDLKAQISALVDKG-- 477
T+EK +A+ Q A +L+ R + + +++ G
Sbjct: 437 SSVDRLRKLEDELADTEEKADALTARWQAEKQKLGHAADLKKRLDEARNELAIAQRNGQF 496
Query: 478 ---------------KEMSKAET-EAGDVGPVVTEV----DIQHIVSAWTGIPVEKVSTD 517
KE++ AE ++ G +V EV +I H+VS WTGIPV+K+
Sbjct: 497 QRAGELTYGIIPGLEKELAAAEARDSSGAGSMVQEVVTPDNIAHVVSRWTGIPVDKMLEG 556
Query: 518 ESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSEL 577
+ ++LL+ME+ L K V+GQ EAV+A+S+A+RR+R GL++PNRPI SFIF GPTGVGK+EL
Sbjct: 557 QREKLLRMEDELAKSVVGQGEAVQAVSKAVRRSRAGLQDPNRPIGSFIFLGPTGVGKTEL 616
Query: 578 AKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVV 637
K+LA + F E AM+RLDMSE+ME+H+V++LIG+PPGYVGY EGG LTEAVRRRPY VV
Sbjct: 617 TKSLARFLFDDETAMVRLDMSEYMEKHSVARLIGAPPGYVGYEEGGALTEAVRRRPYQVV 676
Query: 638 LFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGF 697
LFDEIEKAHPDVFN++LQ+L+DGRLTD +GRTVDFKNT++IMTSN+GS + + G
Sbjct: 677 LFDEIEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFKNTIIIMTSNLGSEFMTQMG----- 731
Query: 698 DLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVF 757
D D+ DS ++ LV E ++ +FRPEFLNR+D++I+F +L + E+ I +I LK +
Sbjct: 732 --DNDDVDS----VRELVMERVRSHFRPEFLNRIDDIILFHRLRRDEMGAIVEIQLKRLV 785
Query: 758 DRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDS 817
L + I L++ E R + +GY+P+YGARPL+R I + ++D +AE +L EI +G
Sbjct: 786 SLLADRKITLELDEDARSWLANKGYDPAYGARPLKRVIQKSVQDRLAEMILGGEIPDGSR 845
Query: 818 VIVDVDSD 825
V V +D
Sbjct: 846 VKVTSGTD 853
>sp|Q7NFE9|CLPB_GLOVI Chaperone protein ClpB OS=Gloeobacter violaceus (strain PCC 7421)
GN=clpB PE=3 SV=1
Length = 872
Score = 734 bits (1895), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/772 (48%), Positives = 531/772 (68%), Gaps = 77/772 (9%)
Query: 114 GHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRTQVIRMVGESTEAVGAGVGGGSS 173
G ++I EHL+L ++ ++L D + ++ V ++ G V +
Sbjct: 105 GDDFISIEHLVLAFAKDVR-FGQQILREFSLDEAKLKAVVAQVRGNQK------VTSQNP 157
Query: 174 GNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTA 233
+ +L++YG +LT+LA EGKLDPV+GR +I R +QIL RRTKNNP LIGEPGVGKTA
Sbjct: 158 ESTYESLDKYGRDLTQLAREGKLDPVIGRDEEIRRTIQILSRRTKNNPVLIGEPGVGKTA 217
Query: 234 IAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSD-EII 292
IAEGLAQRI SGDVP++++G+K+I LDMG L+AG+KYRGEFEERLK ++ E+ +S+ +I+
Sbjct: 218 IAEGLAQRIVSGDVPESLQGRKLIALDMGALIAGSKYRGEFEERLKAVLNEVTKSEGQIV 277
Query: 293 LFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATTLDEYRKHIEKDPALERRFQ 352
LFIDE+HT++GAGA +GA+DA N+LKP LARGEL+CIGATTLDEYRK+IEKD ALERRFQ
Sbjct: 278 LFIDEIHTVVGAGATQGAMDAGNLLKPMLARGELRCIGATTLDEYRKYIEKDAALERRFQ 337
Query: 353 PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLI 412
V V +P+V++TI IL+GL+ERYE+HH +R +D ALV+AA LS++YISDRFLPDKAIDL+
Sbjct: 338 QVYVDQPTVEDTISILRGLKERYEVHHGVRISDSALVAAAVLSHRYISDRFLPDKAIDLM 397
Query: 413 DEAGSRVRLRHAQLPEEARELEKELRQ-------ITKEKNEAVRG--QDFEKA-GELRDR 462
DEA +++++ PE E+++++ Q + KE + A R + EK +L++
Sbjct: 398 DEAAAKLKMEITSKPEALDEVDRKILQLEMERLSLAKESDAASRDRLERLEKELADLKEE 457
Query: 463 EMDLKAQISA---LVDKGKEMSK---------------------AETEAGDVGPV----- 493
+ L AQ A ++D+ + + + AE + G + +
Sbjct: 458 QRSLNAQWQAEKDIIDQVQAVKEEIDQVNVQIQQAERDYDLNRAAELKYGKLSELQKRLD 517
Query: 494 --------------------VTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRV 533
VTE DI I+S WTGIPV K+ E ++LL +E+ LHKRV
Sbjct: 518 AADKQLSETQTSGRSLLREEVTEEDIAEIISKWTGIPVSKLVASEREKLLHLEDELHKRV 577
Query: 534 IGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMI 593
+GQ+EAV+ +S AI+R+R GL +PNRPIASFIF GPTGVGK+ELAKALA++ F E AM+
Sbjct: 578 VGQEEAVRIVSEAIQRSRAGLADPNRPIASFIFLGPTGVGKTELAKALASFLFDDENAMV 637
Query: 594 RLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMM 653
R+DMSE+ME+H+VS+LIG+PPGYVGY EGGQLTEAVRRRPY VVLFDEIEKAH DVFN++
Sbjct: 638 RIDMSEYMEKHSVSRLIGAPPGYVGYDEGGQLTEAVRRRPYAVVLFDEIEKAHNDVFNVL 697
Query: 654 LQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKS 713
LQ+L+DGR+TDS+GRT+DFKN ++IMTSN+GS I + G D+ Y +++
Sbjct: 698 LQVLDDGRITDSQGRTIDFKNAVIIMTSNIGSDAILRLG----------GNDAYYEQMRE 747
Query: 714 LVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTERF 773
V ++ +FRPEFLNR+D++I+FR L + ++ I + + + RL + I L+++E
Sbjct: 748 EVMRAMQVHFRPEFLNRVDDIIIFRNLRRDQLAAIVKLQIARLEKRLADRKITLKLSEAA 807
Query: 774 RERVVEEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDVDSD 825
+ +VE GY+P YGARPL+RAI L + +A +L + +GD++ VD++++
Sbjct: 808 IDYIVEAGYDPVYGARPLKRAIQNELVNPLARGLLKGDFNDGDTIFVDIENE 859
>sp|Q9RA63|CLPB_THET8 Chaperone protein ClpB OS=Thermus thermophilus (strain HB8 / ATCC
27634 / DSM 579) GN=clpB PE=1 SV=2
Length = 854
Score = 732 bits (1889), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/705 (55%), Positives = 510/705 (72%), Gaps = 66/705 (9%)
Query: 179 TLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGL 238
LE+YG +LT+LA EGKLDPV+GR +I RV+QIL RRTKNNP LIGEPGVGKTAI EGL
Sbjct: 152 ALEQYGIDLTRLAAEGKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGL 211
Query: 239 AQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSD-EIILFIDE 297
AQRI GDVP+ ++GK++++L MG L+AG KYRGEFEERLK +++E+ QS E+ILFIDE
Sbjct: 212 AQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDE 271
Query: 298 VHTLIGAGAAEGAIDAANILKPSLARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVP 357
+HT++GAG AEGA+DA N+LKP+LARGEL+ IGATTLDEYR+ IEKDPALERRFQPV V
Sbjct: 272 LHTVVGAGKAEGAVDAGNMLKPALARGELRLIGATTLDEYRE-IEKDPALERRFQPVYVD 330
Query: 358 EPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGS 417
EP+V+ETI IL+GL+E+YE+HH +R +D A+++AA LS++YI++R LPDKAIDLIDEA +
Sbjct: 331 EPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAIDLIDEAAA 390
Query: 418 RVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLK------AQIS 471
R+R+ PEE LE++ Q+ E+ + +D + L+ E ++ A++
Sbjct: 391 RLRMALESAPEEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLR 450
Query: 472 ALVDKGKEMSK----------------------------AETEAGDVGPVVTEV------ 497
A ++ +E+ + AE G++ + EV
Sbjct: 451 AEWEREREILRKLREAQHRLDEVRREIELAERQYDLNRAAELRYGELPKLEAEVEALSEK 510
Query: 498 --------------DIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAI 543
DI IVS WTGIPV K+ E ++LL++EE LHKRV+GQDEA++A+
Sbjct: 511 LRGARFVRLEVTEEDIAEIVSRWTGIPVSKLLEGEREKLLRLEEELHKRVVGQDEAIRAV 570
Query: 544 SRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMER 603
+ AIRRAR GLK+PNRPI SF+F GPTGVGK+ELAK LAA F +EEAMIR+DM+E+ME+
Sbjct: 571 ADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEK 630
Query: 604 HTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLT 663
H VS+LIG+PPGYVGY EGGQLTEAVRRRPY+V+LFDEIEKAHPDVFN++LQIL+DGRLT
Sbjct: 631 HAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAHPDVFNILLQILDDGRLT 690
Query: 664 DSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYF 723
DS GRTVDF+NT++I+TSN+GS +I +G +K Y RI+ V + L+Q+F
Sbjct: 691 DSHGRTVDFRNTVIILTSNLGSPLILEGL----------QKGWPYERIRDEVFKVLQQHF 740
Query: 724 RPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYN 783
RPEFLNRLDE++VFR LTK ++++I +I L + RL K I L++TE ++ + E GY+
Sbjct: 741 RPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAERGYD 800
Query: 784 PSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDVDSDGNV 828
P +GARPLRR I R LE +A+K+LA E+KEGD V VDV G V
Sbjct: 801 PVFGARPLRRVIQRELETPLAQKILAGEVKEGDRVQVDVGPAGLV 845
Score = 43.9 bits (102), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 41/78 (52%)
Query: 92 FERFTEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRT 151
ER+T+ A + + AQ A+R+ H I HL LL++ +A R+LE GADP ++
Sbjct: 3 LERWTQAAREALAQAQVLAQRMKHQAIDLPHLWAVLLKDERSLAWRLLEKAGADPKALKE 62
Query: 152 QVIRMVGESTEAVGAGVG 169
R + + GA VG
Sbjct: 63 LQERELARLPKVEGAEVG 80
>sp|Q72IK9|CLPB_THET2 Chaperone protein ClpB OS=Thermus thermophilus (strain HB27 / ATCC
BAA-163 / DSM 7039) GN=clpB PE=3 SV=1
Length = 854
Score = 731 bits (1888), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/705 (55%), Positives = 510/705 (72%), Gaps = 66/705 (9%)
Query: 179 TLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGL 238
LE+YG +LT+LA EGKLDPV+GR +I RV+QIL RRTKNNP LIGEPGVGKTAI EGL
Sbjct: 152 ALEQYGIDLTRLAAEGKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGL 211
Query: 239 AQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSD-EIILFIDE 297
AQRI GDVP+ ++GK++++L MG L+AG KYRGEFEERLK +++E+ QS E+ILFIDE
Sbjct: 212 AQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDE 271
Query: 298 VHTLIGAGAAEGAIDAANILKPSLARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVP 357
+HT++GAG AEGA+DA N+LKP+LARGEL+ IGATTLDEYR+ IEKDPALERRFQPV V
Sbjct: 272 LHTVVGAGKAEGAVDAGNMLKPALARGELRLIGATTLDEYRE-IEKDPALERRFQPVYVD 330
Query: 358 EPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGS 417
EP+V+ETI IL+GL+E+YE+HH +R +D A+++AA LS++YI++R LPDKAIDLIDEA +
Sbjct: 331 EPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAIDLIDEAAA 390
Query: 418 RVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLK------AQIS 471
R+R+ PEE LE++ Q+ E+ + +D + L+ E ++ A++
Sbjct: 391 RLRMALESAPEEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLR 450
Query: 472 ALVDKGKEMSK----------------------------AETEAGDVGPVVTEV------ 497
A ++ +E+ + AE G++ + EV
Sbjct: 451 AEWEREREILRKLREAQHRLDEVRREIELAERQYDLNRAAELRYGELPKLEAEVEALSEK 510
Query: 498 --------------DIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAI 543
DI IVS WTGIPV K+ E ++LL++EE LHKRV+GQDEA++A+
Sbjct: 511 LRGARFVRLEVTEEDIAEIVSRWTGIPVSKLLEGEREKLLRLEEELHKRVVGQDEAIRAV 570
Query: 544 SRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMER 603
+ AIRRAR GLK+PNRPI SF+F GPTGVGK+ELAK LAA F +EEAMIR+DM+E+ME+
Sbjct: 571 ADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEK 630
Query: 604 HTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLT 663
H VS+LIG+PPGYVGY EGGQLTEAVRRRPY+V+LFDEIEKAHPDVFN++LQIL+DGRLT
Sbjct: 631 HAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAHPDVFNILLQILDDGRLT 690
Query: 664 DSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYF 723
DS GRTVDF+NT++I+TSN+GS +I +G +K Y RI+ V + L+Q+F
Sbjct: 691 DSHGRTVDFRNTVIILTSNLGSPLILEGL----------QKGWPYERIRDEVFKVLQQHF 740
Query: 724 RPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYN 783
RPEFLNRLDE++VFR LTK ++++I +I L + RL K I L++TE ++ + E GY+
Sbjct: 741 RPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAERGYD 800
Query: 784 PSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDVDSDGNV 828
P +GARPLRR I R LE +A+K+LA E+KEGD V VDV G V
Sbjct: 801 PVFGARPLRRVIQRELETPLAQKILAGEVKEGDRVQVDVGPAGLV 845
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%)
Query: 92 FERFTEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRT 151
ER+T+ A + + AQ A+R+ H I HL LL++ G+A R+LE GADP ++
Sbjct: 3 LERWTQAAREALAQAQVLAQRMKHQAIDLPHLWAVLLKDEGGLAWRLLEKAGADPKALKE 62
Query: 152 QVIRMVGESTEAVGAGVG 169
R + + GA VG
Sbjct: 63 LQERELSRLPKVEGAEVG 80
>sp|Q7XL03|CLPD2_ORYSJ Chaperone protein ClpD2, chloroplastic OS=Oryza sativa subsp.
japonica GN=CLPD2 PE=2 SV=2
Length = 937
Score = 731 bits (1886), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/807 (49%), Positives = 542/807 (67%), Gaps = 40/807 (4%)
Query: 78 GKSGRAGGFVVKAMFERFTEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAAR 137
GK G A V A F+ + +V A E +R +G N+I EH+ LGL +
Sbjct: 135 GKEGLAQAPVGLATDVPFSGASKRVFEAAVEFSRNMGCNFISPEHIALGLFNLNDPTTNN 194
Query: 138 VLENLGADPSNIRTQVI-RMVGE----STEAVGAGV---------GGGSSG-------NK 176
VL++LG D S + Q + R+ GE E VG GGG S NK
Sbjct: 195 VLKSLGVDSSQLAKQALTRVQGELAKDGREPVGLSSFKVREKFTPGGGKSAIVKYSNKNK 254
Query: 177 MPT-LEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIA 235
+ L + +LT A G +DPV+GR+ +IERVVQI+ RRTKNNP L+GE GVGKTAIA
Sbjct: 255 EKSALALFCLDLTMRASGGLIDPVIGRKDEIERVVQIICRRTKNNPILLGEAGVGKTAIA 314
Query: 236 EGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFI 295
EGLA +IA+GDVP + GK++++LD+ LL+AG K RGE E R+ L+ E++++ ++ILFI
Sbjct: 315 EGLAHKIANGDVPIFLVGKRILSLDVALLMAGAKERGELEARVTSLIREVRKAGDVILFI 374
Query: 296 DEVHTLIGAGAA----EGA-IDAANILKPSLARGELQCIGATTLDEYRKHIEKDPALERR 350
DEVHTLIG+G A +GA +D AN+LKP+LARGELQCI +TTLDE+R H +KD AL RR
Sbjct: 375 DEVHTLIGSGIAGRGSKGAGLDIANLLKPALARGELQCIASTTLDEHRLHFDKDKALARR 434
Query: 351 FQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAID 410
FQPV V EPS ++ ++IL GLRE+YE +HK +YT E++ +A LS +YI+DR LPDKAID
Sbjct: 435 FQPVLVNEPSQEDAVKILLGLREKYETYHKCKYTLESINAAVYLSARYIADRHLPDKAID 494
Query: 411 LIDEAGSRVRL---------RHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRD 461
LIDEAGSR R+ + + L + E +E+R + + +E + + D
Sbjct: 495 LIDEAGSRARMESFKRKKEEQCSILSKSPDEYWQEIRAV-QNMHEVALTNKVKYSLNQND 553
Query: 462 REMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDR 521
+E + ++ DK S T D +V +I + S W+GIPV++++ DE
Sbjct: 554 QEDAVDIELVG-EDKTSPASMLSTST-DKPSLVGSEEIARVTSLWSGIPVQQLTADERKL 611
Query: 522 LLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKAL 581
L+ +++ L KRVIGQD+AV AIS+A++R+RVGL +P+RPIA+ IF GPTGVGK+EL KAL
Sbjct: 612 LVGLDDELRKRVIGQDDAVLAISKAVKRSRVGLNDPDRPIATLIFCGPTGVGKTELTKAL 671
Query: 582 AAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDE 641
AA YFGSE A +RLDMSE+MERH VSKLIGSPPGY+G+ EGG LTEAVRR+P+TVVL DE
Sbjct: 672 AASYFGSESATVRLDMSEYMERHAVSKLIGSPPGYMGFGEGGTLTEAVRRKPFTVVLLDE 731
Query: 642 IEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDY 701
IEKAHPD+FN++LQI EDG LTDS+GR V FKNTL++MTSNVGS+ I G R IGF
Sbjct: 732 IEKAHPDIFNILLQIFEDGHLTDSQGRRVSFKNTLIVMTSNVGSTSISNGKRSIGFQTQT 791
Query: 702 DEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLK 761
D ++ SY +KSLV EELK +FRPE LNR+DE++VF L K ++ I +IML+EV R+
Sbjct: 792 DTEEKSYAAMKSLVMEELKAFFRPELLNRIDEVVVFHPLEKTQMLAILNIMLQEVKGRIL 851
Query: 762 TKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVD 821
I L+V++ ++ + + GY+ SYGARPLRRA+ +L+ED ++E +L+ + K GD+++VD
Sbjct: 852 ALGIGLEVSDSMKDLISQHGYDKSYGARPLRRAVTQLVEDVISEAILSGQFKPGDTIMVD 911
Query: 822 VDSDGNVTVLNGSSGAPESLADPLPVV 848
D+ G L+ + L+DP P +
Sbjct: 912 TDATGK-PCLSRLNDQTVQLSDPTPTL 937
Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 35/47 (74%)
Query: 84 GGFVVKAMFERFTEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLRE 130
GG VV+A+FERFTE+A+K ++ +Q EAR +G + HLLLGL+ E
Sbjct: 63 GGVVVRAVFERFTERAVKAVVFSQREARGMGDETVAPHHLLLGLVAE 109
>sp|Q6H795|CLPD1_ORYSJ Chaperone protein ClpD1, chloroplastic OS=Oryza sativa subsp.
japonica GN=CLPD1 PE=2 SV=1
Length = 938
Score = 730 bits (1884), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/767 (50%), Positives = 527/767 (68%), Gaps = 35/767 (4%)
Query: 95 FTEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRTQVI 154
F+ +V +A E +R +G ++I EHL L L + +L +LGADPS + + +
Sbjct: 159 FSGSCKRVFEVAVEFSRNMGCSFISPEHLALALFTLDDPTTNSLLRSLGADPSQLASVAL 218
Query: 155 -----RMVGESTEAVGAG---------VGGG--------SSGNKMPTLEEYGTNLTKLAE 192
+ + E GA G G +S + L+++ +LT A
Sbjct: 219 TRLQAELAKDCREPAGASSFKVPKKSPAGAGRSAFSKSLNSKKEKGALDQFCLDLTTQAS 278
Query: 193 EGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIE 252
G +DP++GR+ +IERVVQI+ RRTKNNP L+GE GVGKTAIAEGLA RIA+GDVP +
Sbjct: 279 GGFIDPIIGREEEIERVVQIICRRTKNNPILLGEAGVGKTAIAEGLALRIANGDVPIYLV 338
Query: 253 GKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGA---AEG 309
K++++LD+GLL+AG K RGE E R+ L+ E++++ ++ILFIDEVH LIG+G +G
Sbjct: 339 AKRIMSLDVGLLIAGAKERGELESRVTSLIREVREAGDVILFIDEVHNLIGSGTVGKGKG 398
Query: 310 A-IDAANILKPSLARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQIL 368
A +D N+LKP LARGELQCI ATTLDE+R H EKD AL RRFQPV V EPS D+ ++IL
Sbjct: 399 AGLDIGNLLKPPLARGELQCIAATTLDEHRMHFEKDKALARRFQPVLVEEPSQDDAVKIL 458
Query: 369 KGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPE 428
GLRE+YE +HK ++T EA+ +A LS +YI DR LPDKAIDLIDEAGSR R+ +
Sbjct: 459 LGLREKYETYHKCKFTLEAINAAVYLSARYIPDRQLPDKAIDLIDEAGSRARMESFNRKK 518
Query: 429 EARE--LEKELRQITKEKNEAVRGQDFEKAGELR--DREMDLKAQISALVDKGKEMSKAE 484
E + L K + +E A + + +++ R+ + A I A ++M++
Sbjct: 519 EGQSSILLKSPDEYWQEIRAAQNMHEVVSSNQMKYSPRQENGSAAIKA---PSEDMNELT 575
Query: 485 TEAGDVGPVVTEVD-IQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAI 543
+E P+V + I + S W+GIPV++++ D+ L+ ++ L KRVIGQD+AV AI
Sbjct: 576 SELQVEEPIVVGTEEIARVASLWSGIPVQQLTADDRKLLVGLDGELRKRVIGQDDAVMAI 635
Query: 544 SRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMER 603
SRA++R+RVGL +P+RPIA+ +F GPTGVGK+EL KALAA YFGSE AM+RLDMSE+MER
Sbjct: 636 SRAVKRSRVGLNDPDRPIATLLFCGPTGVGKTELTKALAASYFGSESAMLRLDMSEYMER 695
Query: 604 HTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLT 663
HTVSKLIGSPPGY+GY E G LTEAVRR+P+TVVL DEIEKAHPD+FN++LQI EDG L+
Sbjct: 696 HTVSKLIGSPPGYIGYGETGTLTEAVRRKPFTVVLLDEIEKAHPDIFNILLQIFEDGHLS 755
Query: 664 DSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYF 723
DS+GR V FKNTL++MTSN+GS+ I KG R +GF + D + SSY +KSLV EELK +F
Sbjct: 756 DSQGRRVSFKNTLIVMTSNIGSTSISKGRRSMGF-MTEDTESSSYVAMKSLVMEELKAFF 814
Query: 724 RPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYN 783
RPE LNR+DEM+VFR L K ++ I DI+L+EV RL I L+V++ ++ + EEGY+
Sbjct: 815 RPELLNRIDEMVVFRPLEKTQMLAILDIILQEVKGRLLALGIGLEVSDAMKDLICEEGYD 874
Query: 784 PSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDVDSDGNVTV 830
SYGARPLRRA+ L+ED ++E +L E K GD++++D+D+ G + +
Sbjct: 875 KSYGARPLRRAVTHLIEDVISEAILFGEYKPGDTILMDIDAGGKLCM 921
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 29/39 (74%)
Query: 92 FERFTEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLRE 130
FERFTE+A+K ++L+Q EA+ LG + HLLLGL+ E
Sbjct: 74 FERFTERAVKAVVLSQREAKGLGEGAVAPRHLLLGLIAE 112
>sp|P63284|CLPB_ECOLI Chaperone protein ClpB OS=Escherichia coli (strain K12) GN=clpB
PE=1 SV=1
Length = 857
Score = 729 bits (1883), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/793 (48%), Positives = 541/793 (68%), Gaps = 78/793 (9%)
Query: 96 TEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRTQVIR 155
++ ++V+ L + A++ G N+I SE +L L E G A +L+ GA +NI + +
Sbjct: 84 SQDLVRVLNLCDKLAQKRGDNFISSELFVLAAL-ESRGTLADILKAAGATTANITQAIEQ 142
Query: 156 MVGESTEAVGAGVGGGSSGNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGR 215
M G G V + ++ L++Y +LT+ AE+GKLDPV+GR +I R +Q+L R
Sbjct: 143 MRG------GESVNDQGAEDQRQALKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQR 196
Query: 216 RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFE 275
RTKNNP LIGEPGVGKTAI EGLAQRI +G+VP+ ++G++V+ LDMG LVAG KYRGEFE
Sbjct: 197 RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFE 256
Query: 276 ERLKKLMEEI-KQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATTL 334
ERLK ++ ++ KQ +ILFIDE+HT++GAG A+GA+DA N+LKP+LARGEL C+GATTL
Sbjct: 257 ERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTL 316
Query: 335 DEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQL 394
DEYR++IEKD ALERRFQ V V EPSV++TI IL+GL+ERYE+HH ++ TD A+V+AA L
Sbjct: 317 DEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATL 376
Query: 395 SYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQI-------TKEKNEA 447
S++YI+DR LPDKAIDLIDEA S +R++ PEE L++ + Q+ KE +EA
Sbjct: 377 SHRYIADRQLPDKAIDLIDEAASSIRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEA 436
Query: 448 VRGQDFEKAGELRDREM-------DLKAQISALVDKGKEMSKAETE-----------AGD 489
+ + EL D+E + KA+ ++L G + KAE E GD
Sbjct: 437 SKKRLDMLNEELSDKERQYSELEEEWKAEKASL--SGTQTIKAELEQAKIAIEQARRVGD 494
Query: 490 VGPV--------------------------------VTEVDIQHIVSAWTGIPVEKVSTD 517
+ + VT+ +I +++ WTGIPV ++
Sbjct: 495 LARMSELQYGKIPELEKQLEAATQLEGKTMRLLRNKVTDAEIAEVLARWTGIPVSRMMES 554
Query: 518 ESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSEL 577
E ++LL+ME+ LH RVIGQ+EAV A+S AIRR+R GL +PNRPI SF+F GPTGVGK+EL
Sbjct: 555 EREKLLRMEQELHHRVIGQNEAVDAVSNAIRRSRAGLADPNRPIGSFLFLGPTGVGKTEL 614
Query: 578 AKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVV 637
KALA + F S+EAM+R+DMSEFME+H+VS+L+G+PPGYVGY EGG LTEAVRRRPY+V+
Sbjct: 615 CKALANFMFDSDEAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVI 674
Query: 638 LFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGF 697
L DE+EKAHPDVFN++LQ+L+DGRLTD +GRTVDF+NT++IMTSN+GS +I++ R G
Sbjct: 675 LLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQE---RFG- 730
Query: 698 DLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVF 757
+LD Y +K LV + FRPEF+NR+DE++VF L + + IA I LK ++
Sbjct: 731 ELD-------YAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLKRLY 783
Query: 758 DRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDS 817
RL+ + E+ +++ + + E GY+P YGARPL+RAI + +E+ +A+++L+ E+ G
Sbjct: 784 KRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQILSGELVPGKV 843
Query: 818 VIVDVDSDGNVTV 830
+ ++V+ D V V
Sbjct: 844 IRLEVNEDRIVAV 856
>sp|P63286|CLPB_ECOL6 Chaperone protein ClpB OS=Escherichia coli O6:H1 (strain CFT073 /
ATCC 700928 / UPEC) GN=clpB PE=3 SV=1
Length = 857
Score = 729 bits (1883), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/793 (48%), Positives = 541/793 (68%), Gaps = 78/793 (9%)
Query: 96 TEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRTQVIR 155
++ ++V+ L + A++ G N+I SE +L L E G A +L+ GA +NI + +
Sbjct: 84 SQDLVRVLNLCDKLAQKRGDNFISSELFVLAAL-ESRGTLADILKAAGATTANITQAIEQ 142
Query: 156 MVGESTEAVGAGVGGGSSGNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGR 215
M G G V + ++ L++Y +LT+ AE+GKLDPV+GR +I R +Q+L R
Sbjct: 143 MRG------GESVNDQGAEDQRQALKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQR 196
Query: 216 RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFE 275
RTKNNP LIGEPGVGKTAI EGLAQRI +G+VP+ ++G++V+ LDMG LVAG KYRGEFE
Sbjct: 197 RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFE 256
Query: 276 ERLKKLMEEI-KQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATTL 334
ERLK ++ ++ KQ +ILFIDE+HT++GAG A+GA+DA N+LKP+LARGEL C+GATTL
Sbjct: 257 ERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTL 316
Query: 335 DEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQL 394
DEYR++IEKD ALERRFQ V V EPSV++TI IL+GL+ERYE+HH ++ TD A+V+AA L
Sbjct: 317 DEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATL 376
Query: 395 SYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQI-------TKEKNEA 447
S++YI+DR LPDKAIDLIDEA S +R++ PEE L++ + Q+ KE +EA
Sbjct: 377 SHRYIADRQLPDKAIDLIDEAASSIRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEA 436
Query: 448 VRGQDFEKAGELRDREM-------DLKAQISALVDKGKEMSKAETE-----------AGD 489
+ + EL D+E + KA+ ++L G + KAE E GD
Sbjct: 437 SKKRLDMLNEELSDKERQYSELEEEWKAEKASL--SGTQTIKAELEQAKIAIEQARRVGD 494
Query: 490 VGPV--------------------------------VTEVDIQHIVSAWTGIPVEKVSTD 517
+ + VT+ +I +++ WTGIPV ++
Sbjct: 495 LARMSELQYGKIPELEKQLEAATQLEGKTMRLLRNKVTDAEIAEVLARWTGIPVSRMMES 554
Query: 518 ESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSEL 577
E ++LL+ME+ LH RVIGQ+EAV A+S AIRR+R GL +PNRPI SF+F GPTGVGK+EL
Sbjct: 555 EREKLLRMEQELHHRVIGQNEAVDAVSNAIRRSRAGLADPNRPIGSFLFLGPTGVGKTEL 614
Query: 578 AKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVV 637
KALA + F S+EAM+R+DMSEFME+H+VS+L+G+PPGYVGY EGG LTEAVRRRPY+V+
Sbjct: 615 CKALANFMFDSDEAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVI 674
Query: 638 LFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGF 697
L DE+EKAHPDVFN++LQ+L+DGRLTD +GRTVDF+NT++IMTSN+GS +I++ R G
Sbjct: 675 LLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQE---RFG- 730
Query: 698 DLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVF 757
+LD Y +K LV + FRPEF+NR+DE++VF L + + IA I LK ++
Sbjct: 731 ELD-------YAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLKRLY 783
Query: 758 DRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDS 817
RL+ + E+ +++ + + E GY+P YGARPL+RAI + +E+ +A+++L+ E+ G
Sbjct: 784 KRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQILSGELVPGKV 843
Query: 818 VIVDVDSDGNVTV 830
+ ++V+ D V V
Sbjct: 844 IRLEVNEDRIVAV 856
>sp|P63285|CLPB_ECO57 Chaperone protein ClpB OS=Escherichia coli O157:H7 GN=clpB PE=3
SV=1
Length = 857
Score = 729 bits (1883), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/793 (48%), Positives = 541/793 (68%), Gaps = 78/793 (9%)
Query: 96 TEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRTQVIR 155
++ ++V+ L + A++ G N+I SE +L L E G A +L+ GA +NI + +
Sbjct: 84 SQDLVRVLNLCDKLAQKRGDNFISSELFVLAAL-ESRGTLADILKAAGATTANITQAIEQ 142
Query: 156 MVGESTEAVGAGVGGGSSGNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGR 215
M G G V + ++ L++Y +LT+ AE+GKLDPV+GR +I R +Q+L R
Sbjct: 143 MRG------GESVNDQGAEDQRQALKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQR 196
Query: 216 RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFE 275
RTKNNP LIGEPGVGKTAI EGLAQRI +G+VP+ ++G++V+ LDMG LVAG KYRGEFE
Sbjct: 197 RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFE 256
Query: 276 ERLKKLMEEI-KQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATTL 334
ERLK ++ ++ KQ +ILFIDE+HT++GAG A+GA+DA N+LKP+LARGEL C+GATTL
Sbjct: 257 ERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTL 316
Query: 335 DEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQL 394
DEYR++IEKD ALERRFQ V V EPSV++TI IL+GL+ERYE+HH ++ TD A+V+AA L
Sbjct: 317 DEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATL 376
Query: 395 SYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQI-------TKEKNEA 447
S++YI+DR LPDKAIDLIDEA S +R++ PEE L++ + Q+ KE +EA
Sbjct: 377 SHRYIADRQLPDKAIDLIDEAASSIRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEA 436
Query: 448 VRGQDFEKAGELRDREM-------DLKAQISALVDKGKEMSKAETE-----------AGD 489
+ + EL D+E + KA+ ++L G + KAE E GD
Sbjct: 437 SKKRLDMLNEELSDKERQYSELEEEWKAEKASL--SGTQTIKAELEQAKIAIEQARRVGD 494
Query: 490 VGPV--------------------------------VTEVDIQHIVSAWTGIPVEKVSTD 517
+ + VT+ +I +++ WTGIPV ++
Sbjct: 495 LARMSELQYGKIPELEKQLEAATQLEGKTMRLLRNKVTDAEIAEVLARWTGIPVSRMMES 554
Query: 518 ESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSEL 577
E ++LL+ME+ LH RVIGQ+EAV A+S AIRR+R GL +PNRPI SF+F GPTGVGK+EL
Sbjct: 555 EREKLLRMEQELHHRVIGQNEAVDAVSNAIRRSRAGLADPNRPIGSFLFLGPTGVGKTEL 614
Query: 578 AKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVV 637
KALA + F S+EAM+R+DMSEFME+H+VS+L+G+PPGYVGY EGG LTEAVRRRPY+V+
Sbjct: 615 CKALANFMFDSDEAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVI 674
Query: 638 LFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGF 697
L DE+EKAHPDVFN++LQ+L+DGRLTD +GRTVDF+NT++IMTSN+GS +I++ R G
Sbjct: 675 LLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQE---RFG- 730
Query: 698 DLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVF 757
+LD Y +K LV + FRPEF+NR+DE++VF L + + IA I LK ++
Sbjct: 731 ELD-------YAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLKRLY 783
Query: 758 DRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDS 817
RL+ + E+ +++ + + E GY+P YGARPL+RAI + +E+ +A+++L+ E+ G
Sbjct: 784 KRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQILSGELVPGKV 843
Query: 818 VIVDVDSDGNVTV 830
+ ++V+ D V V
Sbjct: 844 IRLEVNEDRIVAV 856
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.134 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 308,803,820
Number of Sequences: 539616
Number of extensions: 13748528
Number of successful extensions: 72751
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 294
Number of HSP's successfully gapped in prelim test: 1986
Number of HSP's that attempted gapping in prelim test: 67863
Number of HSP's gapped (non-prelim): 5397
length of query: 848
length of database: 191,569,459
effective HSP length: 126
effective length of query: 722
effective length of database: 123,577,843
effective search space: 89223202646
effective search space used: 89223202646
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 66 (30.0 bits)