Query 003094
Match_columns 848
No_of_seqs 526 out of 4636
Neff 8.5
Searched_HMMs 46136
Date Thu Mar 28 16:54:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003094.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003094hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0542 clpA ATP-binding subun 100.0 5E-113 1E-117 976.5 72.8 703 94-825 73-777 (786)
2 CHL00095 clpC Clp protease ATP 100.0 2.2E-97 5E-102 896.8 80.7 730 94-830 79-809 (821)
3 TIGR03345 VI_ClpV1 type VI sec 100.0 6.8E-92 1.5E-96 842.5 76.8 722 94-823 75-851 (852)
4 PRK10865 protein disaggregatio 100.0 2.1E-90 4.6E-95 833.0 73.5 729 90-830 1-855 (857)
5 TIGR03346 chaperone_ClpB ATP-d 100.0 2.4E-89 5.2E-94 828.7 77.4 716 94-828 77-850 (852)
6 TIGR02639 ClpA ATP-dependent C 100.0 2E-89 4.4E-94 819.2 66.9 652 94-822 77-731 (731)
7 PRK11034 clpA ATP-dependent Cl 100.0 2.3E-88 5E-93 795.6 66.3 656 94-826 79-739 (758)
8 KOG1051 Chaperone HSP104 and r 100.0 7E-84 1.5E-88 745.7 54.0 733 90-827 7-857 (898)
9 KOG0733 Nuclear AAA ATPase (VC 100.0 1.3E-46 2.9E-51 406.4 34.5 501 194-810 187-741 (802)
10 KOG0730 AAA+-type ATPase [Post 100.0 6.1E-41 1.3E-45 369.1 31.4 437 197-808 184-658 (693)
11 TIGR01243 CDC48 AAA family ATP 100.0 3.6E-35 7.8E-40 353.3 37.0 457 193-808 174-678 (733)
12 KOG0736 Peroxisome assembly fa 100.0 1.2E-33 2.6E-38 313.6 31.0 450 199-808 403-901 (953)
13 KOG0735 AAA+-type ATPase [Post 100.0 6.9E-30 1.5E-34 281.1 34.2 432 215-810 428-893 (952)
14 TIGR00382 clpX endopeptidase C 100.0 9.7E-31 2.1E-35 287.3 26.4 270 522-806 68-388 (413)
15 KOG0741 AAA+-type ATPase [Post 100.0 1E-30 2.2E-35 278.9 22.6 398 209-749 247-682 (744)
16 PRK05342 clpX ATP-dependent pr 100.0 6.4E-30 1.4E-34 283.0 25.1 272 522-807 62-383 (412)
17 COG0464 SpoVK ATPases of the A 99.9 3.1E-24 6.7E-29 248.5 34.7 426 208-807 8-467 (494)
18 COG1222 RPT1 ATP-dependent 26S 99.9 2.6E-25 5.6E-30 229.8 19.3 196 194-416 148-369 (406)
19 COG1219 ClpX ATP-dependent pro 99.9 4.1E-25 8.8E-30 223.8 18.9 271 522-806 52-371 (408)
20 COG2204 AtoC Response regulato 99.9 2.5E-24 5.5E-29 236.6 25.3 229 530-800 140-372 (464)
21 COG3604 FhlA Transcriptional r 99.9 1.4E-24 2.9E-29 233.5 17.3 223 531-802 223-456 (550)
22 TIGR00763 lon ATP-dependent pr 99.9 6.8E-22 1.5E-26 238.7 36.6 276 499-825 289-577 (775)
23 COG3829 RocR Transcriptional r 99.9 6.8E-24 1.5E-28 231.7 17.0 231 528-800 242-477 (560)
24 PF07724 AAA_2: AAA domain (Cd 99.9 2E-24 4.4E-29 211.8 10.9 155 559-734 1-171 (171)
25 COG1223 Predicted ATPase (AAA+ 99.9 3E-23 6.5E-28 204.4 18.0 193 187-401 111-321 (368)
26 KOG0730 AAA+-type ATPase [Post 99.9 2E-23 4.4E-28 231.1 18.8 201 193-421 430-654 (693)
27 PRK10787 DNA-binding ATP-depen 99.9 2.2E-21 4.8E-26 231.5 34.1 261 501-811 293-564 (784)
28 PRK05201 hslU ATP-dependent pr 99.9 2.5E-22 5.3E-27 216.9 21.5 260 523-822 7-422 (443)
29 KOG0733 Nuclear AAA ATPase (VC 99.9 2E-22 4.2E-27 219.6 18.7 242 126-416 463-730 (802)
30 CHL00195 ycf46 Ycf46; Provisio 99.9 2E-20 4.3E-25 211.4 33.8 332 290-803 82-445 (489)
31 TIGR00390 hslU ATP-dependent p 99.9 1.5E-21 3.2E-26 210.8 21.4 260 523-822 4-420 (441)
32 KOG0739 AAA+-type ATPase [Post 99.9 1.3E-21 2.9E-26 196.2 17.7 188 194-402 130-338 (439)
33 TIGR02974 phageshock_pspF psp 99.9 1.4E-21 3.1E-26 212.4 19.4 228 533-801 1-232 (329)
34 KOG0745 Putative ATP-dependent 99.9 1.3E-21 2.8E-26 205.7 18.2 231 562-806 227-512 (564)
35 KOG0738 AAA+-type ATPase [Post 99.9 9.4E-22 2E-26 204.4 16.7 197 194-417 209-430 (491)
36 COG0466 Lon ATP-dependent Lon 99.9 2.8E-20 6.2E-25 208.1 27.8 259 501-808 294-563 (782)
37 KOG0734 AAA+-type ATPase conta 99.9 1.3E-21 2.8E-26 209.9 15.6 203 194-423 301-525 (752)
38 COG2256 MGS1 ATPase related to 99.9 1.9E-21 4.2E-26 204.6 16.2 198 186-419 13-220 (436)
39 CHL00195 ycf46 Ycf46; Provisio 99.9 4.3E-20 9.2E-25 208.7 26.1 188 194-401 225-431 (489)
40 CHL00181 cbbX CbbX; Provisiona 99.9 2E-20 4.4E-25 199.2 21.4 224 521-809 13-261 (287)
41 PF05496 RuvB_N: Holliday junc 99.9 2.9E-21 6.4E-26 191.4 13.8 190 185-417 12-227 (233)
42 PRK11608 pspF phage shock prot 99.9 1.7E-20 3.7E-25 204.3 20.7 230 530-800 5-238 (326)
43 KOG0736 Peroxisome assembly fa 99.9 2E-20 4.2E-25 209.1 21.1 198 194-417 669-893 (953)
44 PRK15424 propionate catabolism 99.9 1.4E-20 3E-25 214.7 19.1 227 530-800 218-463 (538)
45 TIGR01817 nifA Nif-specific re 99.9 1.1E-20 2.5E-25 220.4 18.6 229 529-800 194-426 (534)
46 TIGR02880 cbbX_cfxQ probable R 99.8 4E-20 8.7E-25 197.2 21.1 221 521-806 12-257 (284)
47 TIGR02329 propionate_PrpR prop 99.8 1.8E-20 3.9E-25 214.3 19.1 230 529-801 210-449 (526)
48 COG1221 PspF Transcriptional r 99.8 1.4E-20 2.9E-25 203.7 15.8 230 527-804 74-311 (403)
49 PF05496 RuvB_N: Holliday junc 99.8 4.6E-20 9.9E-25 183.0 17.4 189 521-780 14-210 (233)
50 PRK05022 anaerobic nitric oxid 99.8 6.4E-20 1.4E-24 212.1 20.0 230 530-801 186-419 (509)
51 KOG0728 26S proteasome regulat 99.8 2.6E-19 5.7E-24 175.5 17.8 189 189-399 139-353 (404)
52 PRK03992 proteasome-activating 99.8 2.1E-19 4.5E-24 200.5 18.9 199 194-419 128-352 (389)
53 PRK10820 DNA-binding transcrip 99.8 2.2E-19 4.8E-24 207.5 19.8 230 529-800 202-435 (520)
54 KOG0735 AAA+-type ATPase [Post 99.8 1.6E-19 3.4E-24 200.0 16.0 194 195-415 665-881 (952)
55 PTZ00454 26S protease regulato 99.8 4.2E-19 9E-24 196.7 19.1 200 194-420 142-367 (398)
56 PRK11388 DNA-binding transcrip 99.8 2.9E-19 6.4E-24 213.2 19.0 226 530-800 324-552 (638)
57 TIGR02881 spore_V_K stage V sp 99.8 6.2E-19 1.4E-23 186.8 18.6 214 532-810 7-246 (261)
58 COG3283 TyrR Transcriptional r 99.8 7E-19 1.5E-23 181.0 18.0 225 530-800 203-430 (511)
59 COG2256 MGS1 ATPase related to 99.8 2.3E-19 4.9E-24 189.1 14.0 179 523-780 16-201 (436)
60 COG1223 Predicted ATPase (AAA+ 99.8 3.4E-19 7.3E-24 176.0 14.0 207 525-810 115-339 (368)
61 KOG0989 Replication factor C, 99.8 4.6E-19 9.9E-24 180.2 15.3 205 184-416 23-235 (346)
62 KOG0737 AAA+-type ATPase [Post 99.8 2.7E-19 5.8E-24 186.8 13.9 185 194-401 89-298 (386)
63 PRK15429 formate hydrogenlyase 99.8 1.3E-18 2.8E-23 208.7 21.4 229 530-800 375-607 (686)
64 KOG0740 AAA+-type ATPase [Post 99.8 5.7E-19 1.2E-23 191.4 15.9 203 187-415 143-367 (428)
65 COG0464 SpoVK ATPases of the A 99.8 1.3E-18 2.8E-23 201.7 19.8 204 194-422 239-465 (494)
66 KOG2004 Mitochondrial ATP-depe 99.8 7.5E-18 1.6E-22 187.3 24.6 255 503-806 384-649 (906)
67 PTZ00361 26 proteosome regulat 99.8 1E-18 2.3E-23 194.5 17.8 202 191-420 177-405 (438)
68 TIGR02881 spore_V_K stage V sp 99.8 1.3E-18 2.9E-23 184.3 17.9 213 195-419 4-238 (261)
69 COG1222 RPT1 ATP-dependent 26S 99.8 1.3E-18 2.8E-23 180.4 16.6 166 530-756 150-338 (406)
70 TIGR01241 FtsH_fam ATP-depende 99.8 1.2E-18 2.6E-23 201.2 17.4 200 193-419 51-275 (495)
71 PLN00020 ribulose bisphosphate 99.8 1.7E-18 3.6E-23 182.8 16.6 161 213-397 143-330 (413)
72 PF00158 Sigma54_activat: Sigm 99.8 6.4E-19 1.4E-23 172.4 12.1 144 533-684 1-144 (168)
73 KOG0652 26S proteasome regulat 99.8 2E-18 4.3E-23 170.3 15.3 185 195-401 169-379 (424)
74 PRK14956 DNA polymerase III su 99.8 3.3E-18 7.1E-23 189.8 18.6 202 185-417 6-228 (484)
75 TIGR01243 CDC48 AAA family ATP 99.8 2.1E-18 4.6E-23 208.2 18.2 196 194-417 450-670 (733)
76 KOG0732 AAA+-type ATPase conta 99.8 1.9E-18 4.1E-23 202.8 16.8 191 193-401 261-476 (1080)
77 KOG2028 ATPase related to the 99.8 1.3E-18 2.9E-23 179.1 13.5 205 185-422 126-347 (554)
78 KOG0731 AAA+-type ATPase conta 99.8 3.6E-18 7.8E-23 195.7 18.4 199 194-418 308-532 (774)
79 KOG0727 26S proteasome regulat 99.8 2.6E-18 5.7E-23 168.7 14.7 165 195-376 153-343 (408)
80 PRK07003 DNA polymerase III su 99.8 2E-17 4.2E-22 189.6 23.7 201 186-417 5-226 (830)
81 TIGR03689 pup_AAA proteasome A 99.8 2.3E-18 5E-23 194.1 15.5 176 191-373 176-379 (512)
82 KOG0989 Replication factor C, 99.8 2.9E-18 6.3E-23 174.4 14.4 194 522-796 27-229 (346)
83 PRK10923 glnG nitrogen regulat 99.8 5.7E-18 1.2E-22 195.7 18.9 228 532-801 139-370 (469)
84 CHL00176 ftsH cell division pr 99.8 1.3E-17 2.8E-22 194.4 19.6 199 194-419 180-403 (638)
85 COG2255 RuvB Holliday junction 99.8 3.7E-17 8E-22 164.6 19.9 193 187-422 16-234 (332)
86 TIGR02915 PEP_resp_reg putativ 99.8 1.3E-17 2.8E-22 191.5 18.9 228 532-800 140-370 (445)
87 CHL00181 cbbX CbbX; Provisiona 99.8 2E-17 4.2E-22 176.4 18.8 188 196-395 21-228 (287)
88 PRK12323 DNA polymerase III su 99.8 1.2E-17 2.6E-22 189.1 17.1 201 186-417 5-231 (700)
89 PRK14956 DNA polymerase III su 99.8 9.9E-18 2.1E-22 186.1 16.1 203 522-796 9-221 (484)
90 TIGR02902 spore_lonB ATP-depen 99.8 2.2E-17 4.8E-22 190.7 19.1 221 524-802 58-312 (531)
91 CHL00095 clpC Clp protease ATP 99.7 1.3E-15 2.7E-20 185.6 35.2 180 530-780 178-376 (821)
92 COG1220 HslU ATP-dependent pro 99.7 5.6E-17 1.2E-21 166.2 19.2 259 524-823 8-424 (444)
93 PRK13342 recombination factor 99.7 2.7E-17 5.9E-22 185.6 18.4 194 186-417 1-202 (413)
94 KOG0726 26S proteasome regulat 99.7 3.1E-18 6.6E-23 171.6 9.3 175 189-380 177-377 (440)
95 COG5271 MDN1 AAA ATPase contai 99.7 8.2E-17 1.8E-21 188.3 22.2 150 564-755 1546-1705(4600)
96 TIGR01242 26Sp45 26S proteasom 99.7 2.7E-17 5.8E-22 182.9 17.9 199 194-420 119-344 (364)
97 COG2255 RuvB Holliday junction 99.7 2.2E-17 4.7E-22 166.3 14.8 187 524-781 19-213 (332)
98 PRK14960 DNA polymerase III su 99.7 1.5E-16 3.2E-21 180.9 22.9 201 186-417 4-225 (702)
99 PRK14949 DNA polymerase III su 99.7 4.7E-17 1E-21 190.1 19.1 201 185-416 4-225 (944)
100 PRK07003 DNA polymerase III su 99.7 2E-17 4.2E-22 189.6 15.6 193 522-780 7-209 (830)
101 PLN03025 replication factor C 99.7 4.8E-17 1E-21 177.6 17.5 196 186-413 2-202 (319)
102 PRK11361 acetoacetate metaboli 99.7 7.5E-17 1.6E-21 185.9 19.9 227 532-800 144-374 (457)
103 PRK15115 response regulator Gl 99.7 6.8E-17 1.5E-21 185.4 18.6 228 532-800 135-365 (444)
104 TIGR02880 cbbX_cfxQ probable R 99.7 1.4E-16 3E-21 170.1 19.5 185 198-394 23-226 (284)
105 KOG0729 26S proteasome regulat 99.7 1.7E-17 3.8E-22 164.2 11.4 165 194-375 174-364 (435)
106 TIGR01818 ntrC nitrogen regula 99.7 9.8E-17 2.1E-21 185.2 19.7 228 532-801 135-366 (463)
107 TIGR02639 ClpA ATP-dependent C 99.7 1.7E-15 3.7E-20 182.5 31.1 179 531-780 182-380 (731)
108 COG0465 HflB ATP-dependent Zn 99.7 3.1E-17 6.6E-22 185.4 14.4 209 187-422 140-373 (596)
109 PRK12323 DNA polymerase III su 99.7 2.8E-17 6E-22 186.3 13.8 193 522-780 7-214 (700)
110 PRK14958 DNA polymerase III su 99.7 1.3E-16 2.7E-21 182.6 19.1 201 186-417 5-226 (509)
111 PRK14949 DNA polymerase III su 99.7 5.2E-17 1.1E-21 189.7 15.9 192 523-780 8-209 (944)
112 PRK14964 DNA polymerase III su 99.7 1.4E-16 3E-21 179.3 18.5 202 186-418 2-224 (491)
113 CHL00206 ycf2 Ycf2; Provisiona 99.7 9E-17 2E-21 196.2 17.4 185 211-422 1623-1860(2281)
114 PRK07764 DNA polymerase III su 99.7 4.1E-16 9E-21 186.2 22.7 200 186-416 4-226 (824)
115 PRK07994 DNA polymerase III su 99.7 1.7E-16 3.8E-21 183.4 18.8 201 186-417 5-226 (647)
116 PRK14962 DNA polymerase III su 99.7 3.1E-16 6.7E-21 177.5 20.2 201 186-417 3-224 (472)
117 PRK00080 ruvB Holliday junctio 99.7 7.9E-16 1.7E-20 168.8 22.9 190 187-419 15-230 (328)
118 TIGR03345 VI_ClpV1 type VI sec 99.7 6.8E-15 1.5E-19 178.1 32.3 179 531-780 187-385 (852)
119 KOG0991 Replication factor C, 99.7 6.1E-17 1.3E-21 157.7 10.6 208 177-417 7-220 (333)
120 PRK13341 recombination factor 99.7 2.5E-16 5.5E-21 185.9 17.8 200 186-417 17-223 (725)
121 PRK14952 DNA polymerase III su 99.7 8E-16 1.7E-20 177.2 21.3 200 187-417 3-225 (584)
122 PRK14961 DNA polymerase III su 99.7 5.3E-16 1.2E-20 172.0 18.9 202 185-417 4-226 (363)
123 PRK14960 DNA polymerase III su 99.7 2.4E-16 5.2E-21 179.2 15.8 192 523-780 7-208 (702)
124 PRK14951 DNA polymerase III su 99.7 9.1E-16 2E-20 177.2 20.6 202 186-418 5-232 (618)
125 PRK07994 DNA polymerase III su 99.7 3E-16 6.4E-21 181.5 16.4 192 523-780 8-209 (647)
126 PRK14957 DNA polymerase III su 99.7 7.3E-16 1.6E-20 175.9 19.4 202 186-418 5-227 (546)
127 PLN03025 replication factor C 99.7 3.6E-16 7.8E-21 170.7 16.0 187 523-796 5-199 (319)
128 PRK14958 DNA polymerase III su 99.7 2E-16 4.4E-21 180.9 14.2 192 522-780 7-209 (509)
129 TIGR00635 ruvB Holliday juncti 99.7 3.2E-15 7E-20 162.7 22.9 182 195-419 2-209 (305)
130 PRK08691 DNA polymerase III su 99.7 1.9E-15 4.1E-20 173.7 21.8 202 186-418 5-227 (709)
131 COG3284 AcoR Transcriptional a 99.7 1.6E-16 3.4E-21 177.5 12.5 220 534-800 316-538 (606)
132 PRK14964 DNA polymerase III su 99.7 2.7E-16 5.9E-21 176.8 14.5 208 523-798 5-221 (491)
133 KOG0734 AAA+-type ATPase conta 99.7 3.2E-16 6.9E-21 168.9 13.9 201 527-803 300-522 (752)
134 PRK07764 DNA polymerase III su 99.7 4E-16 8.7E-21 186.3 16.3 207 523-799 7-226 (824)
135 PRK06645 DNA polymerase III su 99.7 1.1E-15 2.3E-20 173.6 18.9 204 185-419 9-237 (507)
136 KOG0651 26S proteasome regulat 99.7 2.5E-16 5.4E-21 160.0 11.7 185 194-400 129-339 (388)
137 TIGR03346 chaperone_ClpB ATP-d 99.7 3.4E-14 7.4E-19 173.6 32.8 67 95-161 1-67 (852)
138 PRK10365 transcriptional regul 99.7 1E-15 2.2E-20 175.7 18.5 227 533-800 141-370 (441)
139 COG2812 DnaX DNA polymerase II 99.7 2E-16 4.4E-21 177.0 12.0 210 522-800 7-226 (515)
140 PRK14959 DNA polymerase III su 99.7 1.8E-15 3.9E-20 173.4 19.5 200 186-416 5-225 (624)
141 PRK05896 DNA polymerase III su 99.7 2.4E-15 5.2E-20 171.5 19.9 202 185-417 4-226 (605)
142 PRK14952 DNA polymerase III su 99.7 1E-15 2.3E-20 176.3 17.1 205 523-797 5-222 (584)
143 PRK10733 hflB ATP-dependent me 99.7 1.2E-15 2.7E-20 180.2 17.6 201 194-421 149-374 (644)
144 PRK14951 DNA polymerase III su 99.7 8.9E-16 1.9E-20 177.3 15.8 192 523-780 8-214 (618)
145 PRK04132 replication factor C 99.7 1.1E-13 2.5E-18 164.0 33.5 157 562-796 565-730 (846)
146 PRK14961 DNA polymerase III su 99.7 1.4E-15 3.1E-20 168.6 15.9 208 522-797 7-223 (363)
147 PRK08451 DNA polymerase III su 99.7 3.3E-15 7.1E-20 169.6 19.0 202 186-418 3-225 (535)
148 PRK14957 DNA polymerase III su 99.6 1.1E-15 2.3E-20 174.5 15.1 207 522-797 7-223 (546)
149 COG5271 MDN1 AAA ATPase contai 99.6 2.6E-13 5.7E-18 159.8 34.4 146 563-750 890-1044(4600)
150 PRK14962 DNA polymerase III su 99.6 1.3E-15 2.7E-20 172.6 14.7 191 523-780 6-207 (472)
151 PRK14969 DNA polymerase III su 99.6 2.8E-15 6E-20 172.8 17.7 202 186-418 5-227 (527)
152 PRK06645 DNA polymerase III su 99.6 1.6E-15 3.5E-20 172.1 15.5 206 523-798 13-233 (507)
153 TIGR02902 spore_lonB ATP-depen 99.6 2.3E-15 5E-20 174.0 17.0 213 184-419 52-312 (531)
154 PRK05563 DNA polymerase III su 99.6 3.9E-15 8.4E-20 172.8 18.9 202 186-418 5-227 (559)
155 KOG0742 AAA+-type ATPase [Post 99.6 1.1E-14 2.5E-19 152.3 20.0 163 196-376 354-532 (630)
156 PRK08691 DNA polymerase III su 99.6 1E-15 2.2E-20 175.8 13.3 208 522-797 7-223 (709)
157 PRK00080 ruvB Holliday junctio 99.6 8.7E-15 1.9E-19 160.6 19.9 200 524-797 18-225 (328)
158 PRK08451 DNA polymerase III su 99.6 2.9E-15 6.2E-20 170.1 16.2 190 523-780 6-207 (535)
159 PRK14959 DNA polymerase III su 99.6 1.3E-15 2.8E-20 174.6 13.4 192 522-780 7-209 (624)
160 KOG2170 ATPase of the AAA+ sup 99.6 2.2E-15 4.9E-20 153.0 13.5 232 521-780 72-318 (344)
161 PRK09111 DNA polymerase III su 99.6 5.7E-15 1.2E-19 171.2 18.8 203 185-418 12-240 (598)
162 PRK14965 DNA polymerase III su 99.6 5.5E-15 1.2E-19 172.3 18.8 202 186-418 5-227 (576)
163 PRK07133 DNA polymerase III su 99.6 6.4E-15 1.4E-19 171.2 18.9 201 185-416 6-224 (725)
164 PRK14963 DNA polymerase III su 99.6 5.6E-15 1.2E-19 168.6 18.1 199 187-416 4-222 (504)
165 KOG0738 AAA+-type ATPase [Post 99.6 3E-15 6.5E-20 156.3 14.1 204 530-806 211-436 (491)
166 PRK07133 DNA polymerase III su 99.6 2.8E-15 6E-20 174.2 15.5 193 522-780 9-208 (725)
167 PHA02544 44 clamp loader, smal 99.6 5.6E-15 1.2E-19 161.7 17.1 185 186-397 10-201 (316)
168 PRK05563 DNA polymerase III su 99.6 5.9E-15 1.3E-19 171.2 17.7 204 523-796 8-222 (559)
169 PRK03992 proteasome-activating 99.6 6E-15 1.3E-19 164.7 17.1 203 528-803 128-353 (389)
170 PRK14965 DNA polymerase III su 99.6 2E-15 4.4E-20 175.9 13.8 191 523-780 8-209 (576)
171 TIGR00635 ruvB Holliday juncti 99.6 1.8E-14 3.8E-19 156.9 20.3 180 530-780 3-190 (305)
172 PRK12402 replication factor C 99.6 8.4E-15 1.8E-19 162.0 18.0 202 186-415 4-230 (337)
173 KOG2028 ATPase related to the 99.6 3.4E-15 7.3E-20 154.3 13.6 204 525-809 132-347 (554)
174 PRK09111 DNA polymerase III su 99.6 3.3E-15 7.1E-20 173.2 14.9 207 523-797 16-236 (598)
175 PRK04195 replication factor C 99.6 2.7E-15 5.8E-20 172.7 14.1 183 186-399 3-196 (482)
176 KOG0727 26S proteasome regulat 99.6 6.6E-15 1.4E-19 145.0 13.9 163 532-755 156-341 (408)
177 PRK14963 DNA polymerase III su 99.6 6.1E-15 1.3E-19 168.4 15.9 192 523-780 6-206 (504)
178 COG2812 DnaX DNA polymerase II 99.6 3.7E-15 8E-20 166.9 13.5 203 186-419 5-228 (515)
179 PRK14969 DNA polymerase III su 99.6 3.8E-15 8.2E-20 171.6 14.0 192 523-780 8-209 (527)
180 PRK06647 DNA polymerase III su 99.6 1.5E-14 3.2E-19 167.2 18.7 201 186-417 5-226 (563)
181 PTZ00454 26S protease regulato 99.6 1.2E-14 2.6E-19 161.4 17.1 199 529-803 143-367 (398)
182 PRK13342 recombination factor 99.6 9.4E-15 2E-19 165.0 16.5 190 523-798 4-200 (413)
183 PRK06305 DNA polymerase III su 99.6 3E-14 6.6E-19 161.3 20.0 201 185-416 5-227 (451)
184 TIGR03689 pup_AAA proteasome A 99.6 1.7E-14 3.7E-19 163.0 17.8 164 531-755 182-380 (512)
185 PRK14953 DNA polymerase III su 99.6 2.2E-14 4.8E-19 163.3 18.9 201 186-417 5-226 (486)
186 PLN00020 ribulose bisphosphate 99.6 4E-14 8.6E-19 150.0 19.2 156 561-780 148-327 (413)
187 TIGR02640 gas_vesic_GvpN gas v 99.6 5.6E-14 1.2E-18 148.8 20.5 149 563-751 23-196 (262)
188 PRK14955 DNA polymerase III su 99.6 2.3E-14 5E-19 160.7 18.3 201 186-417 5-234 (397)
189 TIGR02903 spore_lon_C ATP-depe 99.6 1.8E-13 3.9E-18 160.7 26.4 217 525-799 148-399 (615)
190 PF00004 AAA: ATPase family as 99.6 6.5E-15 1.4E-19 139.1 11.7 120 221-357 1-131 (132)
191 TIGR01241 FtsH_fam ATP-depende 99.6 1.7E-14 3.7E-19 166.8 17.3 166 530-755 54-240 (495)
192 TIGR00763 lon ATP-dependent pr 99.6 1.2E-14 2.6E-19 176.0 16.8 187 198-404 321-543 (775)
193 PRK05896 DNA polymerase III su 99.6 7.7E-15 1.7E-19 167.4 14.0 193 522-780 7-209 (605)
194 PRK13341 recombination factor 99.6 1.8E-14 3.9E-19 170.4 17.6 198 524-799 21-222 (725)
195 PRK14953 DNA polymerase III su 99.6 1.2E-14 2.6E-19 165.5 15.3 207 523-797 8-223 (486)
196 PRK06305 DNA polymerase III su 99.6 1E-14 2.2E-19 165.2 14.3 191 523-780 9-211 (451)
197 COG0466 Lon ATP-dependent Lon 99.6 1.2E-14 2.7E-19 163.3 14.2 199 198-412 324-554 (782)
198 TIGR02397 dnaX_nterm DNA polym 99.6 4.3E-14 9.2E-19 157.5 18.6 201 186-417 3-224 (355)
199 PRK12402 replication factor C 99.6 3.5E-14 7.6E-19 157.0 17.8 203 523-796 7-228 (337)
200 COG0542 clpA ATP-binding subun 99.6 2.6E-12 5.5E-17 149.4 33.2 206 531-808 170-395 (786)
201 PRK14954 DNA polymerase III su 99.6 5.3E-14 1.2E-18 163.3 19.5 202 186-418 5-235 (620)
202 PRK07940 DNA polymerase III su 99.6 2.6E-14 5.6E-19 158.3 15.9 173 530-750 4-186 (394)
203 PRK14970 DNA polymerase III su 99.6 4.5E-14 9.7E-19 157.7 18.0 200 186-416 6-214 (367)
204 KOG2004 Mitochondrial ATP-depe 99.6 2E-14 4.3E-19 160.4 14.7 180 197-393 411-623 (906)
205 CHL00176 ftsH cell division pr 99.6 3.7E-14 7.9E-19 165.7 17.8 200 530-799 182-400 (638)
206 PTZ00361 26 proteosome regulat 99.6 1.6E-14 3.5E-19 161.1 14.0 163 529-755 181-369 (438)
207 PRK14954 DNA polymerase III su 99.6 2.5E-14 5.3E-19 166.1 15.9 191 523-780 8-217 (620)
208 PTZ00112 origin recognition co 99.6 1.1E-13 2.3E-18 159.2 20.6 210 196-418 754-988 (1164)
209 PRK06647 DNA polymerase III su 99.6 2.6E-14 5.6E-19 165.2 15.3 205 523-797 8-223 (563)
210 PRK00440 rfc replication facto 99.6 5.7E-14 1.2E-18 154.0 17.1 201 185-417 5-209 (319)
211 KOG0739 AAA+-type ATPase [Post 99.6 1E-13 2.3E-18 139.9 17.2 204 530-803 132-351 (439)
212 PRK14955 DNA polymerase III su 99.6 2E-14 4.3E-19 161.2 13.5 191 523-780 8-217 (397)
213 KOG0731 AAA+-type ATPase conta 99.6 4.8E-14 1E-18 162.2 16.7 165 529-755 309-497 (774)
214 PRK14971 DNA polymerase III su 99.5 9.9E-14 2.1E-18 162.2 18.7 201 186-417 6-228 (614)
215 PRK14948 DNA polymerase III su 99.5 1.1E-13 2.4E-18 161.7 18.9 199 186-415 5-226 (620)
216 PRK08084 DNA replication initi 99.5 1.5E-13 3.3E-18 143.0 17.6 179 195-399 20-203 (235)
217 PRK04195 replication factor C 99.5 6.6E-14 1.4E-18 161.2 16.0 193 523-798 6-203 (482)
218 PHA02544 44 clamp loader, smal 99.5 1.3E-13 2.8E-18 151.0 17.4 183 521-780 11-198 (316)
219 PRK13531 regulatory ATPase Rav 99.5 2.3E-13 5.1E-18 150.8 18.4 234 520-811 9-269 (498)
220 TIGR01242 26Sp45 26S proteasom 99.5 7.8E-14 1.7E-18 155.2 14.9 206 526-804 117-345 (364)
221 PRK14948 DNA polymerase III su 99.5 8E-14 1.7E-18 162.9 15.5 206 523-797 8-225 (620)
222 PRK14950 DNA polymerase III su 99.5 2.2E-13 4.7E-18 159.9 19.2 200 186-416 5-226 (585)
223 KOG0728 26S proteasome regulat 99.5 3.8E-14 8.2E-19 139.6 10.6 166 526-755 142-333 (404)
224 COG1224 TIP49 DNA helicase TIP 99.5 2.8E-13 6E-18 140.4 17.4 119 634-804 292-410 (450)
225 TIGR02928 orc1/cdc6 family rep 99.5 8.9E-13 1.9E-17 147.4 22.4 211 197-420 15-255 (365)
226 PRK14971 DNA polymerase III su 99.5 1.2E-13 2.6E-18 161.5 15.7 206 522-797 8-225 (614)
227 TIGR02397 dnaX_nterm DNA polym 99.5 1.7E-13 3.6E-18 152.7 15.8 205 523-797 6-221 (355)
228 PRK14950 DNA polymerase III su 99.5 1.2E-13 2.6E-18 162.0 15.1 206 523-797 8-224 (585)
229 TIGR02903 spore_lon_C ATP-depe 99.5 4.7E-13 1E-17 157.2 20.0 212 185-419 142-402 (615)
230 PRK13407 bchI magnesium chelat 99.5 3.4E-13 7.3E-18 145.7 15.9 234 530-810 7-290 (334)
231 CHL00206 ycf2 Ycf2; Provisiona 99.5 2.2E-13 4.7E-18 167.3 16.0 190 561-804 1630-1859(2281)
232 PRK00411 cdc6 cell division co 99.5 4.2E-12 9.1E-17 143.5 25.4 208 196-419 29-262 (394)
233 PHA02244 ATPase-like protein 99.5 2.7E-12 5.8E-17 137.6 22.2 172 530-745 95-266 (383)
234 KOG0991 Replication factor C, 99.5 1.3E-13 2.8E-18 134.6 11.0 178 521-779 17-202 (333)
235 CHL00081 chlI Mg-protoporyphyr 99.5 3.6E-13 7.9E-18 145.6 15.5 234 530-811 16-307 (350)
236 PF06068 TIP49: TIP49 C-termin 99.5 2.8E-13 6E-18 143.3 14.0 112 634-796 279-390 (398)
237 PRK07940 DNA polymerase III su 99.5 3.4E-13 7.4E-18 149.4 14.9 176 195-400 3-208 (394)
238 PRK14970 DNA polymerase III su 99.5 7.7E-13 1.7E-17 147.8 17.9 195 523-799 9-214 (367)
239 PRK00440 rfc replication facto 99.5 7.2E-13 1.6E-17 145.3 17.4 177 523-780 9-192 (319)
240 PRK06893 DNA replication initi 99.5 9.4E-13 2E-17 136.6 16.7 180 193-399 12-197 (229)
241 KOG0729 26S proteasome regulat 99.5 2.9E-13 6.3E-18 134.5 12.0 161 531-752 177-360 (435)
242 PF01078 Mg_chelatase: Magnesi 99.5 5.3E-14 1.1E-18 139.3 6.8 186 530-744 2-206 (206)
243 COG1474 CDC6 Cdc6-related prot 99.5 6.5E-12 1.4E-16 137.9 23.3 211 197-423 17-249 (366)
244 PRK10787 DNA-binding ATP-depen 99.5 5.6E-13 1.2E-17 159.8 16.2 188 195-403 319-543 (784)
245 TIGR02442 Cob-chelat-sub cobal 99.5 9.7E-13 2.1E-17 155.7 17.6 201 530-781 3-262 (633)
246 PRK05342 clpX ATP-dependent pr 99.5 1.5E-12 3.3E-17 144.9 18.0 186 199-395 73-357 (412)
247 KOG2035 Replication factor C, 99.5 1E-12 2.3E-17 131.8 14.5 200 525-796 7-227 (351)
248 PRK00149 dnaA chromosomal repl 99.5 3.3E-12 7.1E-17 146.2 20.6 187 195-398 120-315 (450)
249 TIGR00390 hslU ATP-dependent p 99.4 1.5E-12 3.2E-17 141.5 16.2 108 289-397 247-380 (441)
250 TIGR00362 DnaA chromosomal rep 99.4 4.7E-12 1E-16 143.2 20.7 187 195-398 108-303 (405)
251 TIGR02030 BchI-ChlI magnesium 99.4 9.5E-13 2.1E-17 142.6 14.2 233 530-811 3-294 (337)
252 PRK05201 hslU ATP-dependent pr 99.4 1.1E-12 2.4E-17 142.6 14.5 123 289-412 249-403 (443)
253 PRK14086 dnaA chromosomal repl 99.4 7E-12 1.5E-16 143.4 21.3 186 195-397 286-480 (617)
254 TIGR01650 PD_CobS cobaltochela 99.4 5.4E-12 1.2E-16 134.2 18.9 158 563-752 66-232 (327)
255 TIGR03420 DnaA_homol_Hda DnaA 99.4 2.3E-12 5E-17 133.9 15.8 182 535-799 21-206 (226)
256 KOG0737 AAA+-type ATPase [Post 99.4 1E-12 2.2E-17 137.9 12.7 181 560-810 126-319 (386)
257 KOG0742 AAA+-type ATPase [Post 99.4 1.5E-12 3.3E-17 136.6 14.0 167 532-758 356-533 (630)
258 PRK07399 DNA polymerase III su 99.4 9.2E-13 2E-17 142.2 12.8 165 529-752 2-194 (314)
259 PRK05642 DNA replication initi 99.4 4.2E-12 9E-17 132.0 17.2 155 218-399 45-202 (234)
260 PRK11034 clpA ATP-dependent Cl 99.4 8.5E-12 1.8E-16 148.5 21.9 195 198-412 459-712 (758)
261 KOG0652 26S proteasome regulat 99.4 1.1E-12 2.3E-17 130.1 11.6 164 531-755 171-357 (424)
262 PRK12422 chromosomal replicati 99.4 7.9E-12 1.7E-16 141.1 19.6 185 194-397 108-305 (445)
263 PRK08903 DnaA regulatory inact 99.4 4.9E-12 1.1E-16 131.5 16.5 161 562-800 43-205 (227)
264 TIGR03420 DnaA_homol_Hda DnaA 99.4 8.6E-12 1.9E-16 129.6 18.3 190 194-417 12-207 (226)
265 COG0714 MoxR-like ATPases [Gen 99.4 2.2E-12 4.8E-17 141.5 14.3 171 522-744 15-193 (329)
266 PRK09112 DNA polymerase III su 99.4 2.1E-12 4.5E-17 141.3 13.7 184 529-779 21-228 (351)
267 PRK14088 dnaA chromosomal repl 99.4 1.9E-11 4E-16 138.6 21.9 188 195-398 103-298 (440)
268 PF00004 AAA: ATPase family as 99.4 7E-13 1.5E-17 125.1 8.7 116 564-738 1-131 (132)
269 KOG2035 Replication factor C, 99.4 5.5E-12 1.2E-16 126.7 15.3 197 187-401 3-224 (351)
270 TIGR02640 gas_vesic_GvpN gas v 99.4 2.3E-12 5E-17 136.4 13.0 160 205-395 10-212 (262)
271 PRK09112 DNA polymerase III su 99.4 1.2E-11 2.5E-16 135.5 18.5 201 191-416 17-245 (351)
272 PRK14087 dnaA chromosomal repl 99.4 1.5E-11 3.2E-16 139.5 19.8 202 194-416 112-324 (450)
273 KOG0990 Replication factor C, 99.4 1E-12 2.2E-17 135.0 9.3 211 176-418 20-239 (360)
274 PRK07471 DNA polymerase III su 99.4 9.7E-12 2.1E-16 136.8 17.6 196 191-413 13-240 (365)
275 PF07728 AAA_5: AAA domain (dy 99.4 1.3E-12 2.9E-17 124.7 9.4 114 563-685 1-125 (139)
276 PF13177 DNA_pol3_delta2: DNA 99.4 7.8E-13 1.7E-17 129.2 7.8 151 535-741 1-162 (162)
277 PRK10733 hflB ATP-dependent me 99.4 5.4E-12 1.2E-16 149.5 16.4 162 530-755 151-337 (644)
278 TIGR00368 Mg chelatase-related 99.4 1.5E-11 3.4E-16 140.0 19.2 248 530-806 191-481 (499)
279 PRK08727 hypothetical protein; 99.4 3.1E-11 6.7E-16 125.5 19.5 177 195-398 17-197 (233)
280 KOG0726 26S proteasome regulat 99.4 9.3E-13 2E-17 132.6 7.5 165 527-752 181-368 (440)
281 TIGR00382 clpX endopeptidase C 99.4 1.6E-11 3.4E-16 135.9 18.0 187 198-395 78-363 (413)
282 KOG0744 AAA+-type ATPase [Post 99.4 3.5E-12 7.7E-17 130.6 11.7 148 220-375 179-343 (423)
283 KOG0743 AAA+-type ATPase [Post 99.4 3.5E-12 7.6E-17 137.7 11.8 156 193-373 197-384 (457)
284 PRK13407 bchI magnesium chelat 99.4 1.3E-11 2.9E-16 133.4 16.4 163 193-371 4-215 (334)
285 PRK05564 DNA polymerase III su 99.4 1.3E-11 2.9E-16 134.5 16.2 158 530-752 3-164 (313)
286 PRK11331 5-methylcytosine-spec 99.3 3.8E-11 8.3E-16 132.3 19.4 232 531-809 175-443 (459)
287 PRK07471 DNA polymerase III su 99.3 3.8E-12 8.2E-17 140.0 11.5 168 529-752 17-212 (365)
288 COG0606 Predicted ATPase with 99.3 8E-12 1.7E-16 136.0 13.6 183 530-744 178-383 (490)
289 KOG0744 AAA+-type ATPase [Post 99.3 5.6E-12 1.2E-16 129.1 11.6 145 563-758 179-345 (423)
290 COG4650 RtcR Sigma54-dependent 99.3 6.1E-12 1.3E-16 126.8 11.5 231 528-799 181-423 (531)
291 PTZ00112 origin recognition co 99.3 1.4E-11 2.9E-16 142.3 15.9 210 529-796 753-980 (1164)
292 KOG0732 AAA+-type ATPase conta 99.3 1.2E-11 2.7E-16 146.2 15.8 206 530-805 264-492 (1080)
293 COG0465 HflB ATP-dependent Zn 99.3 1.1E-11 2.3E-16 140.8 14.7 164 529-754 148-334 (596)
294 CHL00081 chlI Mg-protoporyphyr 99.3 3.4E-11 7.4E-16 130.4 17.9 171 186-371 5-231 (350)
295 PF00308 Bac_DnaA: Bacterial d 99.3 8.8E-12 1.9E-16 128.1 12.7 187 194-397 5-200 (219)
296 PRK08058 DNA polymerase III su 99.3 4.9E-12 1.1E-16 138.2 11.4 165 530-750 4-179 (329)
297 PRK06893 DNA replication initi 99.3 2E-11 4.3E-16 126.7 15.3 163 563-798 41-207 (229)
298 PF05621 TniB: Bacterial TniB 99.3 5.5E-11 1.2E-15 124.1 18.2 215 196-419 33-269 (302)
299 PRK08084 DNA replication initi 99.3 3.4E-11 7.3E-16 125.4 16.7 159 563-798 47-213 (235)
300 PF05673 DUF815: Protein of un 99.3 6E-11 1.3E-15 120.0 17.6 167 193-388 23-219 (249)
301 TIGR00602 rad24 checkpoint pro 99.3 2.2E-11 4.8E-16 141.3 16.3 221 185-416 72-328 (637)
302 KOG0740 AAA+-type ATPase [Post 99.3 1E-11 2.2E-16 135.4 12.1 209 526-806 148-375 (428)
303 TIGR02031 BchD-ChlD magnesium 99.3 1.4E-11 2.9E-16 144.2 14.0 208 561-810 16-242 (589)
304 PF07726 AAA_3: ATPase family 99.3 4.6E-12 1E-16 115.0 7.4 106 563-683 1-112 (131)
305 TIGR00764 lon_rel lon-related 99.3 3.4E-11 7.4E-16 141.0 16.6 135 626-798 210-367 (608)
306 TIGR00678 holB DNA polymerase 99.3 3.3E-11 7.1E-16 121.4 14.3 156 562-780 15-180 (188)
307 PRK08903 DnaA regulatory inact 99.3 9.3E-11 2E-15 121.9 18.1 184 192-414 13-202 (227)
308 PRK05564 DNA polymerase III su 99.3 5.8E-11 1.3E-15 129.5 17.2 174 195-397 2-182 (313)
309 PRK13765 ATP-dependent proteas 99.3 2.8E-11 6E-16 141.0 15.2 119 627-780 220-351 (637)
310 KOG0743 AAA+-type ATPase [Post 99.3 1.5E-11 3.4E-16 132.8 12.0 152 563-779 237-415 (457)
311 TIGR02928 orc1/cdc6 family rep 99.3 5.1E-11 1.1E-15 133.3 16.7 199 529-780 13-232 (365)
312 PRK06871 DNA polymerase III su 99.3 1.8E-11 4E-16 131.7 12.3 163 533-751 4-177 (325)
313 PF14532 Sigma54_activ_2: Sigm 99.3 5E-12 1.1E-16 120.4 7.1 137 534-740 1-138 (138)
314 PRK08727 hypothetical protein; 99.3 1.5E-10 3.3E-15 120.4 17.3 164 562-799 42-209 (233)
315 KOG1942 DNA helicase, TBP-inte 99.3 1.2E-10 2.7E-15 117.5 15.8 113 634-796 297-409 (456)
316 PRK08769 DNA polymerase III su 99.3 2.5E-11 5.4E-16 130.5 11.5 164 531-750 4-182 (319)
317 TIGR02030 BchI-ChlI magnesium 99.3 1.6E-10 3.6E-15 125.3 17.8 164 196-371 3-218 (337)
318 PRK05707 DNA polymerase III su 99.3 3.5E-11 7.5E-16 130.7 12.5 161 533-752 5-177 (328)
319 COG1224 TIP49 DNA helicase TIP 99.3 2.2E-10 4.7E-15 119.3 17.6 117 290-423 292-416 (450)
320 KOG0651 26S proteasome regulat 99.3 1.4E-11 3E-16 125.8 8.7 158 530-748 131-311 (388)
321 PTZ00111 DNA replication licen 99.3 5.3E-10 1.2E-14 132.2 23.1 215 493-754 422-658 (915)
322 PRK07993 DNA polymerase III su 99.2 2.8E-11 6.2E-16 131.6 11.2 162 533-750 4-177 (334)
323 COG0593 DnaA ATPase involved i 99.2 4.4E-10 9.6E-15 122.9 20.2 163 218-398 113-279 (408)
324 PRK06090 DNA polymerase III su 99.2 4.2E-11 9.2E-16 128.5 12.1 164 532-751 4-178 (319)
325 TIGR01650 PD_CobS cobaltochela 99.2 4.8E-11 1E-15 127.0 12.3 153 199-372 47-233 (327)
326 smart00763 AAA_PrkA PrkA AAA d 99.2 1.7E-10 3.6E-15 124.2 16.3 208 532-779 52-347 (361)
327 PRK06620 hypothetical protein; 99.2 1.9E-10 4.2E-15 117.6 16.0 136 219-399 45-183 (214)
328 PRK00411 cdc6 cell division co 99.2 2.5E-10 5.4E-15 129.1 18.2 197 529-780 28-240 (394)
329 PRK06964 DNA polymerase III su 99.2 1.1E-10 2.3E-15 126.7 13.9 161 533-751 3-202 (342)
330 PRK07399 DNA polymerase III su 99.2 3E-10 6.4E-15 122.8 17.1 193 195-413 2-223 (314)
331 PF06068 TIP49: TIP49 C-termin 99.2 2E-10 4.3E-15 122.0 15.2 96 290-397 279-382 (398)
332 smart00350 MCM minichromosome 99.2 3.2E-10 7E-15 131.2 18.2 195 522-754 194-401 (509)
333 KOG0741 AAA+-type ATPase [Post 99.2 2E-11 4.3E-16 132.2 7.5 200 563-834 258-482 (744)
334 COG0470 HolB ATPase involved i 99.2 8.6E-11 1.9E-15 129.2 12.7 144 532-742 2-170 (325)
335 TIGR00678 holB DNA polymerase 99.2 2.7E-10 5.9E-15 114.7 15.2 162 208-399 3-185 (188)
336 PRK09087 hypothetical protein; 99.2 6.7E-10 1.5E-14 114.6 18.2 165 195-399 19-189 (226)
337 PRK10865 protein disaggregatio 99.2 1.1E-10 2.4E-15 142.3 14.3 164 525-754 172-355 (857)
338 PRK05642 DNA replication initi 99.2 2.8E-10 6.1E-15 118.3 14.5 164 562-799 46-213 (234)
339 TIGR00362 DnaA chromosomal rep 99.2 1.9E-10 4.2E-15 130.1 14.2 176 561-801 136-317 (405)
340 PF01078 Mg_chelatase: Magnesi 99.2 2.1E-11 4.7E-16 120.9 5.0 135 195-339 1-163 (206)
341 PRK12422 chromosomal replicati 99.2 6.4E-10 1.4E-14 125.7 17.5 174 561-799 141-318 (445)
342 PRK00149 dnaA chromosomal repl 99.2 2.4E-10 5.2E-15 130.9 14.0 176 560-800 147-328 (450)
343 COG0470 HolB ATPase involved i 99.2 4.4E-10 9.6E-15 123.6 15.6 153 197-366 1-175 (325)
344 PF05673 DUF815: Protein of un 99.2 2E-09 4.4E-14 109.0 18.6 182 530-755 26-209 (249)
345 PRK08058 DNA polymerase III su 99.1 3.6E-10 7.9E-15 123.6 14.0 154 196-369 4-179 (329)
346 PRK09862 putative ATP-dependen 99.1 1.1E-09 2.3E-14 124.4 18.1 186 531-744 191-392 (506)
347 COG1239 ChlI Mg-chelatase subu 99.1 3.2E-10 7E-15 122.1 13.0 207 528-781 14-280 (423)
348 KOG0990 Replication factor C, 99.1 5E-11 1.1E-15 122.7 6.5 161 525-755 35-205 (360)
349 PF00308 Bac_DnaA: Bacterial d 99.1 3.6E-10 7.9E-15 116.1 12.8 174 562-800 35-214 (219)
350 PRK13531 regulatory ATPase Rav 99.1 1.9E-09 4E-14 120.1 18.8 213 198-431 21-278 (498)
351 PRK04132 replication factor C 99.1 4.7E-10 1E-14 133.6 14.9 161 220-416 566-736 (846)
352 cd00009 AAA The AAA+ (ATPases 99.1 4.8E-10 1.1E-14 107.2 12.3 150 535-739 2-151 (151)
353 COG1474 CDC6 Cdc6-related prot 99.1 6.4E-10 1.4E-14 122.2 14.8 197 530-780 16-223 (366)
354 PRK05707 DNA polymerase III su 99.1 2.4E-09 5.2E-14 116.3 18.0 166 216-413 19-205 (328)
355 KOG2680 DNA helicase TIP49, TB 99.1 2.3E-09 4.9E-14 108.9 16.2 112 634-796 289-400 (454)
356 TIGR02974 phageshock_pspF psp 99.1 2.6E-09 5.7E-14 116.5 18.1 172 199-393 1-212 (329)
357 PRK11331 5-methylcytosine-spec 99.1 1.1E-09 2.4E-14 120.9 14.7 154 196-358 174-357 (459)
358 PF13177 DNA_pol3_delta2: DNA 99.1 6.8E-10 1.5E-14 108.5 11.7 142 201-360 1-162 (162)
359 PF10431 ClpB_D2-small: C-term 99.1 3.8E-10 8.2E-15 96.6 8.6 81 740-820 1-81 (81)
360 COG2607 Predicted ATPase (AAA+ 99.1 2.3E-09 4.9E-14 106.3 15.0 168 194-390 57-253 (287)
361 cd00009 AAA The AAA+ (ATPases 99.1 8.2E-10 1.8E-14 105.6 11.8 144 200-357 1-150 (151)
362 TIGR02442 Cob-chelat-sub cobal 99.1 2.2E-09 4.9E-14 127.2 17.9 162 196-371 3-213 (633)
363 KOG1969 DNA replication checkp 99.1 6.6E-10 1.4E-14 125.3 12.4 184 185-401 259-506 (877)
364 COG1219 ClpX ATP-dependent pro 99.1 2.4E-09 5.2E-14 110.0 15.1 168 217-395 96-346 (408)
365 PRK07993 DNA polymerase III su 99.1 5.4E-09 1.2E-13 113.9 19.0 178 203-413 8-206 (334)
366 PHA02244 ATPase-like protein 99.1 8.9E-10 1.9E-14 118.5 12.5 139 199-361 98-263 (383)
367 PRK08769 DNA polymerase III su 99.1 2.7E-09 5.8E-14 114.8 16.3 182 202-412 9-209 (319)
368 TIGR01817 nifA Nif-specific re 99.1 3.4E-09 7.4E-14 124.2 18.4 178 193-393 192-407 (534)
369 PRK14088 dnaA chromosomal repl 99.1 9.3E-10 2E-14 124.8 12.9 175 562-800 131-311 (440)
370 PRK06620 hypothetical protein; 99.1 2.3E-09 5E-14 109.6 14.5 145 562-797 45-192 (214)
371 COG0714 MoxR-like ATPases [Gen 99.0 6.2E-10 1.4E-14 122.2 10.3 152 198-369 25-200 (329)
372 PRK14086 dnaA chromosomal repl 99.0 2.8E-09 6E-14 122.4 15.7 173 563-800 316-494 (617)
373 smart00350 MCM minichromosome 99.0 4E-09 8.7E-14 122.1 17.3 201 197-420 203-454 (509)
374 PRK14087 dnaA chromosomal repl 99.0 1.5E-09 3.2E-14 123.3 13.4 178 561-800 141-325 (450)
375 PRK05917 DNA polymerase III su 99.0 1.5E-09 3.2E-14 114.3 12.3 144 538-741 4-155 (290)
376 PRK11608 pspF phage shock prot 99.0 3.5E-09 7.7E-14 115.7 15.7 178 196-393 5-219 (326)
377 KOG0745 Putative ATP-dependent 99.0 4.5E-09 9.9E-14 112.0 15.6 169 217-396 225-488 (564)
378 TIGR00602 rad24 checkpoint pro 99.0 2.8E-09 6E-14 124.1 15.0 225 521-797 74-323 (637)
379 PRK08699 DNA polymerase III su 99.0 1.6E-09 3.4E-14 117.6 11.4 160 533-750 3-182 (325)
380 COG3829 RocR Transcriptional r 99.0 1.7E-09 3.7E-14 119.6 11.7 157 194-370 242-428 (560)
381 PRK06871 DNA polymerase III su 99.0 1.4E-08 3.1E-13 109.4 18.1 148 204-370 9-177 (325)
382 PF07728 AAA_5: AAA domain (dy 99.0 1.5E-09 3.2E-14 103.6 9.1 111 220-351 1-139 (139)
383 PF07724 AAA_2: AAA domain (Cd 99.0 5.6E-10 1.2E-14 109.8 6.3 109 217-336 2-131 (171)
384 TIGR00764 lon_rel lon-related 99.0 9.6E-09 2.1E-13 120.6 17.6 124 288-422 216-374 (608)
385 PRK15424 propionate catabolism 99.0 1.3E-08 2.9E-13 116.9 18.1 162 194-371 216-411 (538)
386 PF01637 Arch_ATPase: Archaeal 99.0 8.6E-10 1.9E-14 114.8 7.7 191 199-399 1-228 (234)
387 PRK07276 DNA polymerase III su 99.0 2.9E-09 6.2E-14 112.7 11.6 155 535-749 6-171 (290)
388 PRK09087 hypothetical protein; 99.0 1.2E-08 2.6E-13 105.4 15.3 134 563-780 46-184 (226)
389 COG3604 FhlA Transcriptional r 99.0 3E-09 6.6E-14 116.0 11.2 182 195-393 221-435 (550)
390 TIGR02329 propionate_PrpR prop 98.9 1.1E-08 2.5E-13 117.6 16.1 177 194-388 209-417 (526)
391 PRK15429 formate hydrogenlyase 98.9 1.7E-08 3.7E-13 121.8 18.3 181 194-393 373-588 (686)
392 PRK06964 DNA polymerase III su 98.9 9.3E-09 2E-13 111.7 14.4 153 204-370 8-202 (342)
393 COG2204 AtoC Response regulato 98.9 6E-09 1.3E-13 115.7 13.2 161 195-370 139-323 (464)
394 PF07726 AAA_3: ATPase family 98.9 1.7E-10 3.7E-15 104.9 0.8 108 220-352 1-130 (131)
395 COG1220 HslU ATP-dependent pro 98.9 1E-08 2.2E-13 106.2 13.4 105 290-395 251-381 (444)
396 KOG1942 DNA helicase, TBP-inte 98.9 1.4E-08 3E-13 103.0 13.6 115 290-421 297-420 (456)
397 PRK05022 anaerobic nitric oxid 98.9 2.4E-08 5.3E-13 116.0 17.5 176 195-393 185-399 (509)
398 TIGR03015 pepcterm_ATPase puta 98.9 1.4E-07 3.1E-12 100.7 22.0 182 217-420 42-247 (269)
399 PTZ00111 DNA replication licen 98.9 4E-08 8.7E-13 116.6 18.9 162 197-373 450-658 (915)
400 PF06309 Torsin: Torsin; Inte 98.9 3.9E-09 8.5E-14 95.9 8.1 109 521-639 15-127 (127)
401 PF00158 Sigma54_activat: Sigm 98.9 1.6E-08 3.5E-13 99.1 13.2 114 199-335 1-144 (168)
402 PRK11388 DNA-binding transcrip 98.9 2.2E-08 4.7E-13 120.1 16.4 177 194-393 322-533 (638)
403 PRK05818 DNA polymerase III su 98.9 7.3E-09 1.6E-13 106.7 10.4 133 561-741 7-148 (261)
404 PRK06090 DNA polymerase III su 98.9 3.5E-08 7.6E-13 106.2 15.9 149 203-369 9-177 (319)
405 COG1221 PspF Transcriptional r 98.9 2.9E-08 6.2E-13 108.5 14.7 165 194-381 75-273 (403)
406 COG0606 Predicted ATPase with 98.9 1E-09 2.2E-14 119.8 3.0 123 195-336 177-337 (490)
407 TIGR02031 BchD-ChlD magnesium 98.9 7.2E-08 1.6E-12 113.2 18.4 137 216-372 14-174 (589)
408 PRK10820 DNA-binding transcrip 98.8 6.6E-08 1.4E-12 112.4 17.1 182 193-393 200-416 (520)
409 COG1239 ChlI Mg-chelatase subu 98.8 7E-08 1.5E-12 104.3 15.4 163 196-373 16-233 (423)
410 KOG2227 Pre-initiation complex 98.8 2.5E-07 5.5E-12 100.3 18.6 205 196-416 149-376 (529)
411 PRK07132 DNA polymerase III su 98.8 7.6E-08 1.7E-12 102.9 14.5 147 539-750 4-159 (299)
412 TIGR03015 pepcterm_ATPase puta 98.8 4.6E-07 1E-11 96.7 20.3 171 563-780 45-227 (269)
413 KOG1969 DNA replication checkp 98.8 1E-07 2.2E-12 108.1 15.1 163 563-797 328-510 (877)
414 TIGR00368 Mg chelatase-related 98.8 7.9E-09 1.7E-13 118.0 6.4 151 194-363 189-395 (499)
415 smart00763 AAA_PrkA PrkA AAA d 98.8 1.3E-07 2.9E-12 102.0 15.3 95 291-394 238-348 (361)
416 PRK12377 putative replication 98.7 3.1E-08 6.8E-13 103.0 9.7 105 562-686 102-208 (248)
417 COG2607 Predicted ATPase (AAA+ 98.7 2.3E-07 5E-12 92.3 14.9 179 532-755 61-241 (287)
418 KOG1514 Origin recognition com 98.7 5.2E-07 1.1E-11 102.3 19.4 211 197-424 396-633 (767)
419 COG5245 DYN1 Dynein, heavy cha 98.7 6.9E-07 1.5E-11 106.8 20.9 140 216-374 1492-1660(3164)
420 PF12775 AAA_7: P-loop contain 98.7 1.1E-07 2.4E-12 100.8 12.8 199 563-800 35-253 (272)
421 PRK13406 bchD magnesium chelat 98.7 7.7E-08 1.7E-12 111.8 12.5 177 561-780 25-207 (584)
422 smart00382 AAA ATPases associa 98.7 7.7E-08 1.7E-12 91.0 10.3 129 218-357 2-145 (148)
423 PRK08699 DNA polymerase III su 98.7 2.4E-07 5.2E-12 100.7 15.3 152 204-369 8-182 (325)
424 COG1241 MCM2 Predicted ATPase 98.7 1.7E-07 3.7E-12 108.9 14.7 256 523-814 278-582 (682)
425 PF12775 AAA_7: P-loop contain 98.7 1.3E-08 2.8E-13 107.9 5.1 140 217-375 32-196 (272)
426 PRK13765 ATP-dependent proteas 98.7 1.2E-07 2.6E-12 110.9 13.3 125 288-423 225-384 (637)
427 PF02861 Clp_N: Clp amino term 98.7 3.3E-08 7.2E-13 77.1 5.8 52 106-157 1-52 (53)
428 PRK08116 hypothetical protein; 98.7 2.1E-07 4.6E-12 98.6 13.8 106 563-686 116-223 (268)
429 COG0593 DnaA ATPase involved i 98.7 1.8E-07 3.8E-12 102.7 13.1 175 558-802 110-294 (408)
430 KOG2227 Pre-initiation complex 98.7 2.3E-07 5E-12 100.6 13.0 216 530-799 149-376 (529)
431 PRK12377 putative replication 98.6 7.9E-08 1.7E-12 100.0 8.5 104 217-335 100-206 (248)
432 TIGR02915 PEP_resp_reg putativ 98.6 4.1E-07 8.8E-12 104.7 15.0 176 195-393 137-351 (445)
433 PF13173 AAA_14: AAA domain 98.6 1.1E-07 2.4E-12 89.2 8.0 123 219-363 3-126 (128)
434 PRK10923 glnG nitrogen regulat 98.6 4.6E-07 9.9E-12 105.0 14.4 175 196-393 137-350 (469)
435 PRK05917 DNA polymerase III su 98.6 9.8E-07 2.1E-11 93.2 15.3 138 204-359 4-154 (290)
436 KOG2680 DNA helicase TIP49, TB 98.6 7.1E-07 1.5E-11 91.1 13.5 116 290-422 289-412 (454)
437 PRK09862 putative ATP-dependen 98.6 4.5E-08 9.7E-13 111.3 5.6 158 195-362 189-391 (506)
438 smart00382 AAA ATPases associa 98.6 9.8E-08 2.1E-12 90.3 7.0 119 562-683 3-125 (148)
439 KOG0478 DNA replication licens 98.5 5.7E-07 1.2E-11 101.3 12.6 223 524-780 422-672 (804)
440 PRK08116 hypothetical protein; 98.5 4E-07 8.7E-12 96.5 10.9 138 219-370 115-258 (268)
441 PF14532 Sigma54_activ_2: Sigm 98.5 5.7E-08 1.2E-12 92.5 3.9 129 200-359 1-136 (138)
442 PF03215 Rad17: Rad17 cell cyc 98.5 7.1E-07 1.5E-11 102.4 13.4 212 185-416 7-268 (519)
443 PRK15455 PrkA family serine pr 98.5 1.1E-06 2.3E-11 99.4 14.0 191 529-754 74-347 (644)
444 PRK07952 DNA replication prote 98.5 3.4E-07 7.3E-12 95.1 9.2 114 219-351 100-221 (244)
445 PF13173 AAA_14: AAA domain 98.5 5.1E-07 1.1E-11 84.7 9.6 121 563-745 4-127 (128)
446 PF12774 AAA_6: Hydrolytic ATP 98.5 2.3E-06 4.9E-11 88.3 14.6 132 564-749 35-176 (231)
447 PF00493 MCM: MCM2/3/5 family 98.5 1.8E-07 4E-12 102.3 6.8 253 524-811 17-313 (331)
448 PRK07952 DNA replication prote 98.5 6.5E-07 1.4E-11 93.0 10.1 105 563-686 101-207 (244)
449 PRK11361 acetoacetate metaboli 98.5 1.9E-06 4.2E-11 99.5 15.3 175 196-393 142-355 (457)
450 PF03215 Rad17: Rad17 cell cyc 98.5 4.7E-06 1E-10 95.7 17.9 229 525-800 13-266 (519)
451 TIGR01818 ntrC nitrogen regula 98.5 1.8E-06 3.8E-11 100.0 14.4 183 197-394 134-347 (463)
452 PF13401 AAA_22: AAA domain; P 98.4 7E-07 1.5E-11 84.0 8.7 109 217-334 3-125 (131)
453 PRK08181 transposase; Validate 98.4 3.9E-07 8.5E-12 96.0 7.1 105 217-335 105-209 (269)
454 KOG2228 Origin recognition com 98.4 1.9E-06 4E-11 90.0 11.5 160 197-372 24-219 (408)
455 PRK06835 DNA replication prote 98.4 5.2E-07 1.1E-11 98.0 7.7 106 562-686 184-291 (329)
456 PRK15115 response regulator Gl 98.4 4.6E-06 1E-10 95.9 16.0 173 198-393 135-346 (444)
457 PRK07276 DNA polymerase III su 98.4 4.1E-06 8.9E-11 88.9 14.2 145 202-369 7-172 (290)
458 KOG1051 Chaperone HSP104 and r 98.4 1.3E-06 2.9E-11 103.7 11.3 123 197-336 562-712 (898)
459 PRK07132 DNA polymerase III su 98.4 9.3E-06 2E-10 86.9 16.6 146 204-369 3-159 (299)
460 COG1484 DnaC DNA replication p 98.4 1E-06 2.3E-11 92.4 8.9 103 217-335 104-209 (254)
461 PF01695 IstB_IS21: IstB-like 98.4 3.2E-07 6.8E-12 91.1 4.7 102 563-686 49-152 (178)
462 KOG1970 Checkpoint RAD17-RFC c 98.4 7E-06 1.5E-10 90.9 15.3 175 185-374 70-282 (634)
463 PRK06526 transposase; Provisio 98.4 3.7E-07 8E-12 95.7 4.9 101 563-686 100-203 (254)
464 KOG0480 DNA replication licens 98.3 1.8E-05 3.9E-10 88.9 18.1 256 522-812 336-631 (764)
465 PRK13406 bchD magnesium chelat 98.3 5.7E-06 1.2E-10 96.4 14.9 179 217-423 24-234 (584)
466 KOG1808 AAA ATPase containing 98.3 1.4E-05 3.1E-10 100.9 18.9 134 216-369 438-596 (1856)
467 PRK06581 DNA polymerase III su 98.3 5.3E-06 1.1E-10 83.8 11.9 134 562-752 16-160 (263)
468 PRK06526 transposase; Provisio 98.3 9.1E-07 2E-11 92.8 6.5 77 216-302 96-172 (254)
469 COG1484 DnaC DNA replication p 98.3 2E-06 4.3E-11 90.4 8.7 103 563-686 107-211 (254)
470 PF05729 NACHT: NACHT domain 98.3 9.1E-06 2E-10 79.5 12.5 144 221-373 3-164 (166)
471 KOG3595 Dyneins, heavy chain [ 98.3 2.2E-05 4.7E-10 101.1 19.0 140 219-374 128-288 (1395)
472 PRK06835 DNA replication prote 98.3 3E-06 6.5E-11 92.0 9.7 121 217-351 182-305 (329)
473 PF00910 RNA_helicase: RNA hel 98.2 1.5E-06 3.3E-11 78.6 5.9 93 564-682 1-106 (107)
474 PRK06921 hypothetical protein; 98.2 3.2E-06 6.9E-11 89.5 9.1 122 217-351 116-240 (266)
475 PF01695 IstB_IS21: IstB-like 98.2 7.8E-07 1.7E-11 88.3 4.1 118 205-336 34-151 (178)
476 PF01637 Arch_ATPase: Archaeal 98.2 4.4E-06 9.6E-11 86.8 10.0 191 533-780 1-223 (234)
477 PRK08181 transposase; Validate 98.2 3.3E-06 7.3E-11 89.0 8.5 102 563-686 108-211 (269)
478 PF12780 AAA_8: P-loop contain 98.2 6.2E-06 1.3E-10 87.0 10.2 170 532-756 9-213 (268)
479 PF05621 TniB: Bacterial TniB 98.2 4.3E-05 9.2E-10 80.5 16.2 218 525-800 28-267 (302)
480 PRK05818 DNA polymerase III su 98.2 1.9E-05 4.1E-10 81.7 13.3 124 217-360 6-148 (261)
481 PF13401 AAA_22: AAA domain; P 98.2 1.3E-06 2.8E-11 82.1 4.5 97 563-659 6-114 (131)
482 KOG0478 DNA replication licens 98.2 6.5E-05 1.4E-09 85.2 18.3 139 219-375 463-629 (804)
483 PF13191 AAA_16: AAA ATPase do 98.2 3.1E-06 6.6E-11 84.7 7.2 48 198-245 1-51 (185)
484 PHA00729 NTP-binding motif con 98.2 3.8E-06 8.3E-11 85.2 7.6 126 208-370 7-138 (226)
485 PF00931 NB-ARC: NB-ARC domain 98.2 1.2E-05 2.7E-10 86.6 12.0 173 202-397 1-194 (287)
486 COG1241 MCM2 Predicted ATPase 98.2 2E-05 4.4E-10 91.9 14.2 156 196-374 285-485 (682)
487 PRK09183 transposase/IS protei 98.2 4.9E-06 1.1E-10 87.9 8.4 78 215-301 99-176 (259)
488 PF12774 AAA_6: Hydrolytic ATP 98.1 6.1E-06 1.3E-10 85.1 8.4 139 208-369 24-177 (231)
489 PRK08939 primosomal protein Dn 98.1 3.9E-06 8.4E-11 90.5 7.2 103 217-335 155-261 (306)
490 PRK10365 transcriptional regul 98.1 5.4E-05 1.2E-09 87.0 17.2 173 198-393 140-351 (441)
491 PF05729 NACHT: NACHT domain 98.1 1.2E-05 2.7E-10 78.6 10.1 145 564-754 3-164 (166)
492 KOG1514 Origin recognition com 98.1 0.00012 2.6E-09 83.6 18.4 217 529-801 394-627 (767)
493 PRK09183 transposase/IS protei 98.1 3.6E-06 7.9E-11 88.8 5.9 101 563-686 104-208 (259)
494 PRK08939 primosomal protein Dn 98.1 7.3E-06 1.6E-10 88.4 8.3 104 562-686 157-263 (306)
495 COG1618 Predicted nucleotide k 98.1 5.4E-05 1.2E-09 71.3 12.3 142 217-374 4-174 (179)
496 KOG3347 Predicted nucleotide k 98.0 1.7E-05 3.6E-10 73.4 8.1 93 560-682 6-102 (176)
497 PF08298 AAA_PrkA: PrkA AAA do 98.0 4.7E-05 1E-09 81.7 12.6 208 530-779 60-344 (358)
498 PRK06921 hypothetical protein; 98.0 5.8E-06 1.3E-10 87.5 5.7 102 562-686 118-227 (266)
499 KOG1970 Checkpoint RAD17-RFC c 98.0 0.00018 3.9E-09 80.1 17.0 63 521-585 72-134 (634)
500 KOG0480 DNA replication licens 98.0 0.0001 2.2E-09 83.0 15.3 183 195-396 343-571 (764)
No 1
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.8e-113 Score=976.47 Aligned_cols=703 Identities=57% Similarity=0.923 Sum_probs=646.6
Q ss_pred HhhHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHhhCCCchHHHHHHHcCCChHHHHHHHHHHhccccccccCCCCCCCC
Q 003094 94 RFTEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRTQVIRMVGESTEAVGAGVGGGSS 173 (848)
Q Consensus 94 ~~t~~a~~~l~~A~~~A~~~~~~~i~~eHlLlall~~~~~~a~~iL~~~gv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 173 (848)
.+|+...++++.|..+|+..++.+|+++|||+|++.++++.+..+|...+++...+...+.. +...... ....+
T Consensus 73 ~~s~~~~~~~~~a~~~a~~~~~~~v~~~~llla~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~-----~~~~~ 146 (786)
T COG0542 73 YLSPRLKRVLERAWLLAQSLGDEYVSTEHLLLALLNEPESVAAYILKKLGVTRKDVEELIEE-LRGGNEV-----DSKNA 146 (786)
T ss_pred CCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhcccchHHHHHHHhccCCHHHHHHHHHH-Hhccccc-----CCccc
Confidence 46999999999999999999999999999999999999999999999999999988544433 3322211 11112
Q ss_pred CCCccchHHhhhhhhhhhhcCCCCCccCChHHHHHHHHHhccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCC
Q 003094 174 GNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEG 253 (848)
Q Consensus 174 ~~~~~~l~~~~~~l~~~~~~~~ld~iiG~~~~~~~l~~~l~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~ 253 (848)
....+.|++|+.++++.++.+++||+|||++++++++++|.++.++|++|+|+||+|||+++..+|+++..+.||..|.+
T Consensus 147 ~~~~~~L~~y~~dlt~~Ar~gklDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~ 226 (786)
T COG0542 147 EEDQDALEKYTRDLTELAREGKLDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKD 226 (786)
T ss_pred ccchhhHHHHhhhhHHHHhcCCCCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcC
Confidence 23448999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEeCCcccccccccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCCc-hHHHHHHHhhhhcCCceEEEEee
Q 003094 254 KKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEG-AIDAANILKPSLARGELQCIGAT 332 (848)
Q Consensus 254 ~~v~~~~~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~~-~~~~~~~L~~~l~~~~v~vI~at 332 (848)
.+++.+|++.+..|++|+|++|++++.+++++++.+++||||||+|.++++|...+ ..|+.|+|++.|.+|++.+||+|
T Consensus 227 ~~i~sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~~IGAT 306 (786)
T COG0542 227 KRIYSLDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIGAT 306 (786)
T ss_pred CEEEEecHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeEEEEec
Confidence 99999999999999999999999999999999998899999999999999988766 59999999999999999999999
Q ss_pred ChHHHHhhhhcChhhhcccCCCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCChhhHHHHH
Q 003094 333 TLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLI 412 (848)
Q Consensus 333 n~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~p~~a~~ll 412 (848)
|..+|+++++.|+||.|||+.|.+.+|+.++...||+.+.++|+.+|++.|+|+++.+++.++.+|+.+|++|+||+|++
T Consensus 307 T~~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~LPDKAIDLi 386 (786)
T COG0542 307 TLDEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPDRFLPDKAIDLL 386 (786)
T ss_pred cHHHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhcccCCCCchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH-HHHHHHHhhhhhhhhhhccCCCC
Q 003094 413 DEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKA-QISALVDKGKEMSKAETEAGDVG 491 (848)
Q Consensus 413 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~ 491 (848)
|+|++++++... .|..++.++.++..+..++..+.++++ +.+..+.+...+++. .+..+..... .
T Consensus 387 DeA~a~~~l~~~-~p~~l~~~~~~~~~l~~e~~~~~~e~~-~~~k~~~~~~~~~~~~~~~~~~~~~~------------~ 452 (786)
T COG0542 387 DEAGARVRLEID-KPEELDELERELAQLEIEKEALEREQD-EKEKKLIDEIIKLKEGRIPELEKELE------------A 452 (786)
T ss_pred HHHHHHHHhccc-CCcchhHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHhhhhhhhHHHHHh------------h
Confidence 999999999988 999999999999999999998888877 333333333333332 1111111110 1
Q ss_pred CccCHHHHHHHHHHhhCCCCcccCcchHHHHHHHHHHhhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCc
Q 003094 492 PVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTG 571 (848)
Q Consensus 492 ~~v~~~di~~~~~~~~g~p~~~~~~~~~~~l~~l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~G 571 (848)
.|++++|..+++.|+|+|+.++...+...+.++++.|.+.|+||++|+..|.+++++.+.|+..|++|.+++||.||+|
T Consensus 453 -~v~~~~Ia~vv~~~TgIPv~~l~~~e~~kll~le~~L~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTG 531 (786)
T COG0542 453 -EVDEDDIAEVVARWTGIPVAKLLEDEKEKLLNLERRLKKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTG 531 (786)
T ss_pred -ccCHHHHHHHHHHHHCCChhhhchhhHHHHHHHHHHHhcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCc
Confidence 2999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHhcCCCCceEEecccccccccchhcccCCCCCCcccccccchhHHHHcCCCeEEEEcCCCcCChHHHH
Q 003094 572 VGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFN 651 (848)
Q Consensus 572 tGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~~~~ 651 (848)
||||++|++||..+|+.+.+++++|||+|++.|++++|+|+|||||||.+++.|++++++.|++||+||||+|+||+++|
T Consensus 532 VGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHpdV~n 611 (786)
T COG0542 532 VGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFN 611 (786)
T ss_pred ccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhcCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCcEEEcCCCceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhcc
Q 003094 652 MMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRL 731 (848)
Q Consensus 652 ~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~ 731 (848)
.|||+||+|+++|+.|++|+|+|++||||||.|+..+... .++ .....+..+++.+.+.+.++|+|+|++|+
T Consensus 612 ilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~---~~~-----~~~~~~~~~~~~v~~~l~~~F~PEFLNRi 683 (786)
T COG0542 612 LLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRD---ADG-----DDFADKEALKEAVMEELKKHFRPEFLNRI 683 (786)
T ss_pred HHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhh---ccc-----cccchhhhHHHHHHHHHHhhCCHHHHhhc
Confidence 9999999999999999999999999999999999987653 111 12234567788899999999999999999
Q ss_pred CeEEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHHHHHHHHHHHHHHccc
Q 003094 732 DEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSMAEKMLARE 811 (848)
Q Consensus 732 d~~i~f~~l~~~el~~I~~~~l~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~l~~~l~~~~l~~~ 811 (848)
|.+|+|.||+.+++.+|++.+|.++..++..+++.+.+++++.++|++.||++.||+|+|+|.|++.++++|++.+|.+.
T Consensus 684 d~II~F~~L~~~~l~~Iv~~~L~~l~~~L~~~~i~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~~i~~~La~~iL~g~ 763 (786)
T COG0542 684 DEIIPFNPLSKEVLERIVDLQLNRLAKRLAERGITLELSDEAKDFLAEKGYDPEYGARPLRRAIQQEIEDPLADEILFGK 763 (786)
T ss_pred ccEEeccCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHhccCCCcCchHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999988999999999999999999999999999999999999999999999999
Q ss_pred cCCCCEEEEEEcCC
Q 003094 812 IKEGDSVIVDVDSD 825 (848)
Q Consensus 812 ~~~~~~~~v~~~~~ 825 (848)
+..|.++.|+++++
T Consensus 764 ~~~~~~v~v~~~~~ 777 (786)
T COG0542 764 IEDGGTVKVDVDDE 777 (786)
T ss_pred cCCCcEEEEEecCc
Confidence 99999999999973
No 2
>CHL00095 clpC Clp protease ATP binding subunit
Probab=100.00 E-value=2.2e-97 Score=896.79 Aligned_cols=730 Identities=71% Similarity=1.095 Sum_probs=673.9
Q ss_pred HhhHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHhhCCCchHHHHHHHcCCChHHHHHHHHHHhccccccccCCCCCCCC
Q 003094 94 RFTEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRTQVIRMVGESTEAVGAGVGGGSS 173 (848)
Q Consensus 94 ~~t~~a~~~l~~A~~~A~~~~~~~i~~eHlLlall~~~~~~a~~iL~~~gv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 173 (848)
.||+.+++++..|..+|..+++.+|+++|||+||+.++++.+..+|+.+|++.+.+...+...+...+... ...+ ..
T Consensus 79 ~~S~~~~~vL~~A~~~A~~~~~~~I~~eHLLlALL~~~ds~a~~iL~~~gvd~~~L~~~l~~~l~~~~e~~--~~~~-~~ 155 (821)
T CHL00095 79 PFTPRAKRVLEMSLEEARDLGHNYIGTEHLLLALLEEGEGVAARVLENLGVDLSKIRSLILNLIGEIIEAI--LGAE-QS 155 (821)
T ss_pred ccCHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHhCCCchHHHHHHHcCCCHHHHHHHHHHHhccccccc--cccc-cc
Confidence 58999999999999999999999999999999999999989999999999999999888877654322111 0001 11
Q ss_pred CCCccchHHhhhhhhhhhhcCCCCCccCChHHHHHHHHHhccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCC
Q 003094 174 GNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEG 253 (848)
Q Consensus 174 ~~~~~~l~~~~~~l~~~~~~~~ld~iiG~~~~~~~l~~~l~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~ 253 (848)
....+.|++|+.+|+++++.+++++++|++++++++.++|.++.++|++|+||||||||++|+.+|+.+..+.+|..+.+
T Consensus 156 ~~~~~~l~~~~~~l~~~a~~~~~~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~ 235 (821)
T CHL00095 156 RSKTPTLEEFGTNLTKEAIDGNLDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILED 235 (821)
T ss_pred cccchHHHHHHHHHHHHHHcCCCCCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcC
Confidence 23457999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEeCCcccccccccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCCceEEEEeeC
Q 003094 254 KKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATT 333 (848)
Q Consensus 254 ~~v~~~~~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~atn 333 (848)
.+++.++++.+..|.+|+|+++.+++.+++.+...+++||||||+|.+++.+...+..++.+.|++.+.+|.+.+|++||
T Consensus 236 ~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg~l~~IgaTt 315 (821)
T CHL00095 236 KLVITLDIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATT 315 (821)
T ss_pred CeEEEeeHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCCCcEEEEeCC
Confidence 99999999999999999999999999999999888899999999999998877667778999999999999999999999
Q ss_pred hHHHHhhhhcChhhhcccCCCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCChhhHHHHHH
Q 003094 334 LDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLID 413 (848)
Q Consensus 334 ~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~p~~a~~ll~ 413 (848)
..+|.++++.|+++.+||+.|.++.|+.++...|++.+..++..++++.++++++..++.++.+|+++|++|++|+++||
T Consensus 316 ~~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~r~lPdkaidlld 395 (821)
T CHL00095 316 LDEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRFLPDKAIDLLD 395 (821)
T ss_pred HHHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCccccCchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCCCCc
Q 003094 414 EAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPV 493 (848)
Q Consensus 414 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (848)
+|++.+++.....|..++.+++++..+..+.....++.++..+..++....+++..+..+...|..... .......
T Consensus 396 ~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 471 (821)
T CHL00095 396 EAGSRVRLINSRLPPAARELDKELREILKDKDEAIREQDFETAKQLRDREMEVRAQIAAIIQSKKTEEE----KRLEVPV 471 (821)
T ss_pred HHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhc----ccccCCc
Confidence 999999998888888999999999999999999999999988888877777888888888777765421 1223467
Q ss_pred cCHHHHHHHHHHhhCCCCcccCcchHHHHHHHHHHhhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcch
Q 003094 494 VTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVG 573 (848)
Q Consensus 494 v~~~di~~~~~~~~g~p~~~~~~~~~~~l~~l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtG 573 (848)
|+.+||..+++.|+|+|+..+..++...+..+++.|.+.|+||+++++.|.+++...+.|+..|++|.+++||+||+|||
T Consensus 472 v~~~~i~~~~~~~tgip~~~~~~~~~~~l~~l~~~L~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvG 551 (821)
T CHL00095 472 VTEEDIAEIVSAWTGIPVNKLTKSESEKLLHMEETLHKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVG 551 (821)
T ss_pred cCHHHHHHHHHHHHCCCchhhchhHHHHHHHHHHHhcCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCceEEecccccccccchhcccCCCCCCcccccccchhHHHHcCCCeEEEEcCCCcCChHHHHHH
Q 003094 574 KSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMM 653 (848)
Q Consensus 574 KT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~~~~~L 653 (848)
||++|++||+.+|+.+.+++++||+++.+.+.++.++|+++||+|+.+.+.+.+.++..|++||+|||+|+++|++++.|
T Consensus 552 Kt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~~v~~~L 631 (821)
T CHL00095 552 KTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLL 631 (821)
T ss_pred HHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCcEEEcCCCceeecCCeEEEEecCCCchhhhccCcccccccCCCc-ccccHHHHHHHHHHHHHhhcChhhhhccC
Q 003094 654 LQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDE-KDSSYNRIKSLVTEELKQYFRPEFLNRLD 732 (848)
Q Consensus 654 l~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~ll~R~d 732 (848)
+++||+|.++|..|+.++++|++||+|||.+...|......+||...... .+..+..+...+.+.+..+|+|+|++|+|
T Consensus 632 lq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid 711 (821)
T CHL00095 632 LQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLD 711 (821)
T ss_pred HHHhccCceecCCCcEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCC
Confidence 99999999999999999999999999999999988765667888654322 23356778888899999999999999999
Q ss_pred eEEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHHHHHHHHHHHHHHcccc
Q 003094 733 EMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREI 812 (848)
Q Consensus 733 ~~i~f~~l~~~el~~I~~~~l~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~l~~~l~~~~l~~~~ 812 (848)
.+|+|.||+.+++.+|++..+.++.+++..+++.+.++++++++|++.+|++.+|+|+|++.|++.+.++|++.++.+++
T Consensus 712 ~ii~F~pL~~~~l~~Iv~~~l~~l~~rl~~~~i~l~~~~~~~~~La~~~~~~~~GAR~l~r~i~~~i~~~l~~~~l~~~~ 791 (821)
T CHL00095 712 EIIVFRQLTKNDVWEIAEIMLKNLFKRLNEQGIQLEVTERIKTLLIEEGYNPLYGARPLRRAIMRLLEDPLAEEVLSFKI 791 (821)
T ss_pred eEEEeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEECHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHhCcc
Confidence 99999999999999999999999999998889999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEcCCCcEEE
Q 003094 813 KEGDSVIVDVDSDGNVTV 830 (848)
Q Consensus 813 ~~~~~~~v~~~~~~~~~~ 830 (848)
.+|+++.|+++++|++.+
T Consensus 792 ~~g~~v~~~~~~~~~~~~ 809 (821)
T CHL00095 792 KPGDIIIVDVNDEKEVKI 809 (821)
T ss_pred CCCCEEEEEEeCCCcEEE
Confidence 999999999999997665
No 3
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=100.00 E-value=6.8e-92 Score=842.52 Aligned_cols=722 Identities=42% Similarity=0.672 Sum_probs=624.1
Q ss_pred HhhHHHHHHHHHHHH-HHHHhCCCCcCHHHHHHHHhhCCCc--hHHHHHHHc-CCChHHHHHHHHHHhccccccc----c
Q 003094 94 RFTEKAIKVIMLAQE-EARRLGHNYIGSEHLLLGLLREGEG--VAARVLENL-GADPSNIRTQVIRMVGESTEAV----G 165 (848)
Q Consensus 94 ~~t~~a~~~l~~A~~-~A~~~~~~~i~~eHlLlall~~~~~--~a~~iL~~~-gv~~~~l~~~~~~~~~~~~~~~----~ 165 (848)
.||+.+++++..|.. .+..+|+.+|+++|||+||++++++ .+..++..+ +++.+.+...+........... +
T Consensus 75 ~~S~~l~~vL~~A~~~~a~~~g~~~I~teHLLlALl~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (852)
T TIGR03345 75 VFSPHLVELLQEAWLLASLELGDGRIRSGHLLLALLTDPELRRLLGSISPELAKIDREALREALPALVEGSAEASAAAAD 154 (852)
T ss_pred CcCHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHccccchhHHHHHHHHHhCCCHHHHHHHHHHHhcCCccccccccc
Confidence 479999999999987 4567999999999999999998765 566788877 9999988877765322111010 0
Q ss_pred CCCC-CCCCCCCccchHHhhhhhhhhhhcCCCCCccCChHHHHHHHHHhccCCCCCcEEECCCCCcHHHHHHHHHHHhhC
Q 003094 166 AGVG-GGSSGNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIAS 244 (848)
Q Consensus 166 ~~~~-~~~~~~~~~~l~~~~~~l~~~~~~~~ld~iiG~~~~~~~l~~~l~~~~~~~iLL~GppGtGKT~la~~la~~l~~ 244 (848)
...+ ........+.|++|+.+|+++++++++|+++||++++++++++|.++.++|++|+||||||||++++.+|+.+..
T Consensus 155 ~~~~~~~~~~~~~~~l~~~~~~L~~~~r~~~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~ 234 (852)
T TIGR03345 155 AGPAAAAAGAAGTSALDQYTTDLTAQAREGKIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAA 234 (852)
T ss_pred cccccccccccchhhHHHHhhhHHHHhcCCCCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhh
Confidence 0000 011112457899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCceEEEEeCCcccccccccchHHHHHHHHHHHHHh-CCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcC
Q 003094 245 GDVPDTIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQ-SDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR 323 (848)
Q Consensus 245 ~~~~~~l~~~~v~~~~~~~l~~~~~~~g~~~~~l~~l~~~~~~-~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~ 323 (848)
+.+|..+.+.+++.++++.+.++.+++|+++.+++.+++.++. ..++||||||+|.+++.+...+..++.++|++.+++
T Consensus 235 ~~v~~~l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~ 314 (852)
T TIGR03345 235 GDVPPALRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALAR 314 (852)
T ss_pred CCCCccccCCeEEEeehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhC
Confidence 9999999999999999999998899999999999999999975 468999999999999887766677888999999999
Q ss_pred CceEEEEeeChHHHHhhhhcChhhhcccCCCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCC
Q 003094 324 GELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRF 403 (848)
Q Consensus 324 ~~v~vI~atn~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~ 403 (848)
|.+.+||+||..+|.+++++|++|.|||+.|.|++|+.+++.+||+.+...|+.+|++.++++++..++.++.+|+.+++
T Consensus 315 G~l~~IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~ 394 (852)
T TIGR03345 315 GELRTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQ 394 (852)
T ss_pred CCeEEEEecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHhhHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHcCCCh----H-HHHHHHHHHHHHHHHHHHHHHhhh
Q 003094 404 LPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDF----E-KAGELRDREMDLKAQISALVDKGK 478 (848)
Q Consensus 404 ~p~~a~~ll~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~----~-~a~~~~~~~~~l~~~~~~~~~~~~ 478 (848)
+|++|+|++|+||+.+++.....+..+.++++++..+..+.....++..+ . ....+.....+++.++..+...|.
T Consensus 395 LPDKAIdlldea~a~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (852)
T TIGR03345 395 LPDKAVSLLDTACARVALSQNATPAALEDLRRRIAALELELDALEREAALGADHDERLAELRAELAALEAELAALEARWQ 474 (852)
T ss_pred CccHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988888888888988888888777766443211 1 111222333344444444444333
Q ss_pred hhhh---------------------------------------hhhccCCCCCccCHHHHHHHHHHhhCCCCcccCcchH
Q 003094 479 EMSK---------------------------------------AETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDES 519 (848)
Q Consensus 479 ~~~~---------------------------------------~~~~~~~~~~~v~~~di~~~~~~~~g~p~~~~~~~~~ 519 (848)
.... ...........|+.+||..+++.|+|+|+.++..++.
T Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~vv~~~tgip~~~~~~~e~ 554 (852)
T TIGR03345 475 QEKELVEAILALRAELEADADAPADDDAALRAQLAELEAALASAQGEEPLVFPEVDAQAVAEVVADWTGIPVGRMVRDEI 554 (852)
T ss_pred HHHHHHHHHHHHHHHhhhcccchhhhhHHHHHHHHHHHHHHHHHhhccccccceecHHHHHHHHHHHHCCCchhhchhHH
Confidence 2110 0001112346799999999999999999999999999
Q ss_pred HHHHHHHHHhhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccc
Q 003094 520 DRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSE 599 (848)
Q Consensus 520 ~~l~~l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~ 599 (848)
..+.++++.|.+.|+||+++++.|.+++...+.|+..|++|.+++||+||||||||++|++||+.+|+....++.+||++
T Consensus 555 ~~l~~l~~~L~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse 634 (852)
T TIGR03345 555 EAVLSLPDRLAERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSE 634 (852)
T ss_pred HHHHHHHHHhcCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999889999999999
Q ss_pred cccccchhcccCCCCCCcccccccchhHHHHcCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecCCeEEEE
Q 003094 600 FMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIM 679 (848)
Q Consensus 600 ~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~ 679 (848)
|.+.+.++.|+|+++||+|+.+++.+.++++++|++||+||||+++||++++.|+++|++|.++|..|+.+++.|++||+
T Consensus 635 ~~~~~~~~~l~g~~~gyvg~~~~g~L~~~v~~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~ 714 (852)
T TIGR03345 635 FQEAHTVSRLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILL 714 (852)
T ss_pred hhhhhhhccccCCCCCcccccccchHHHHHHhCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHHHHHHHHHHH
Q 003094 680 TSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDR 759 (848)
Q Consensus 680 tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~~~l~~~~~~ 759 (848)
|||.+...+..... ++ ........+...+...+..+|+|+|++||+ +|+|.||+.+++.+|++..+.++.++
T Consensus 715 TSNlg~~~~~~~~~--~~-----~~~~~~~~~~~~~~~~~~~~f~PEflnRi~-iI~F~pLs~e~l~~Iv~~~L~~l~~r 786 (852)
T TIGR03345 715 TSNAGSDLIMALCA--DP-----ETAPDPEALLEALRPELLKVFKPAFLGRMT-VIPYLPLDDDVLAAIVRLKLDRIARR 786 (852)
T ss_pred eCCCchHHHHHhcc--Cc-----ccCcchHHHHHHHHHHHHHhccHHHhccee-EEEeCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999886644210 11 011124556777888999999999999995 99999999999999999999999888
Q ss_pred HhcC-CCeEeecHHHHHHHHHccCCCCCCchHHHHHHHHHHHHHHHHHHHccccCCCCEEEEEEc
Q 003094 760 LKTK-DIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDVD 823 (848)
Q Consensus 760 ~~~~-~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~l~~~l~~~~l~~~~~~~~~~~v~~~ 823 (848)
+... ++.+.++++++++|++.+|++.+|+|+|++.|++.+.++|++++|.+.........|+++
T Consensus 787 l~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~~~la~~~l~~~~~~~~~~~~~~~ 851 (852)
T TIGR03345 787 LKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPELSRQILERLAAGEPIERIHLD 851 (852)
T ss_pred HHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHHhChhcCCCeeEEEEe
Confidence 8665 899999999999999999999999999999999999999999999988777777666653
No 4
>PRK10865 protein disaggregation chaperone; Provisional
Probab=100.00 E-value=2.1e-90 Score=832.99 Aligned_cols=729 Identities=50% Similarity=0.854 Sum_probs=631.4
Q ss_pred hhhHHhhHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHhhCCCchHHHHHHHcCCChHHHHHHHHHHhccccccc---cC
Q 003094 90 AMFERFTEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRTQVIRMVGESTEAV---GA 166 (848)
Q Consensus 90 ~~~~~~t~~a~~~l~~A~~~A~~~~~~~i~~eHlLlall~~~~~~a~~iL~~~gv~~~~l~~~~~~~~~~~~~~~---~~ 166 (848)
||+++||+.+++++..|+.+|++++|.+|++||||+||+.++++.+..+|+.+|+|.+.++..+...+...+... +.
T Consensus 1 ~~~~~~~~~~~~~l~~a~~~a~~~~~~~~~~~hll~~l~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 80 (857)
T PRK10865 1 MRLDRLTNKFQLALADAQSLALGHDNQFIEPLHLMSALLNQEGGSVRPLLTSAGINAGQLRTDINQALSRLPQVEGTGGD 80 (857)
T ss_pred CChHHhCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhCCccHHHHHHHHcCCCHHHHHHHHHHHHhhCCCCCCCCCC
Confidence 457899999999999999999999999999999999999999888999999999999999988887664322100 00
Q ss_pred ---C----------------CC------------------------------------------CCCC------CCCccc
Q 003094 167 ---G----------------VG------------------------------------------GGSS------GNKMPT 179 (848)
Q Consensus 167 ---~----------------~~------------------------------------------~~~~------~~~~~~ 179 (848)
+ .+ ++.. ....+.
T Consensus 81 ~~~~~~~~~~l~~a~~~~~~~~~~~i~~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (857)
T PRK10865 81 VQPSQDLVRVLNLCDKLAQKRGDNFISSELFVLAALESRGTLADILKAAGATTANITQAIEQMRGGESVNDQGAEDQRQA 160 (857)
T ss_pred CCcCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHcCcchHHHHHHHcCCCHHHHHHHHHHhhccccccccccccchhH
Confidence 0 00 0000 011257
Q ss_pred hHHhhhhhhhhhhcCCCCCccCChHHHHHHHHHhccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEE
Q 003094 180 LEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITL 259 (848)
Q Consensus 180 l~~~~~~l~~~~~~~~ld~iiG~~~~~~~l~~~l~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~ 259 (848)
|++||.+|+++++++++|+++||++++++++++|.++.++|++|+||||||||++++.+|+.+..+.+|..+.+.+++.+
T Consensus 161 l~~~~~~l~~~~r~~~l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l 240 (857)
T PRK10865 161 LKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL 240 (857)
T ss_pred HHHHhhhHHHHHhcCCCCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCcccccccccchHHHHHHHHHHHHHh-CCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCCceEEEEeeChHHHH
Q 003094 260 DMGLLVAGTKYRGEFEERLKKLMEEIKQ-SDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATTLDEYR 338 (848)
Q Consensus 260 ~~~~l~~~~~~~g~~~~~l~~l~~~~~~-~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~atn~~~~~ 338 (848)
+++.+..+.+++|+++.+++.+++.+.. .+++||||||+|.+++.+...+..+..+.|++.+++|.+.+||+||..+|+
T Consensus 241 ~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g~l~~IgaTt~~e~r 320 (857)
T PRK10865 241 DMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYR 320 (857)
T ss_pred ehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcCCCeEEEcCCCHHHH
Confidence 9999999999999999999999998754 568999999999999888777888999999999999999999999999999
Q ss_pred hhhhcChhhhcccCCCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCChhhHHHHHHHHhhH
Q 003094 339 KHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSR 418 (848)
Q Consensus 339 ~~~~~d~al~~Rf~~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~p~~a~~ll~~a~~~ 418 (848)
++++.|+++.|||+.|.++.|+.+++..|++.+..+++.+|++.++++++..++.++.+|+.++++|++|++++|.+++.
T Consensus 321 ~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ry~~~~~~pdkAi~LiD~aaa~ 400 (857)
T PRK10865 321 QYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAASS 400 (857)
T ss_pred HHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhccccCCCCChHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCchHHHHHHHHHHHHHHHHHHHHcCCChHH---HHHHHHHHHHHHHHHHHHHHhhhhhh--------------
Q 003094 419 VRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEK---AGELRDREMDLKAQISALVDKGKEMS-------------- 481 (848)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---a~~~~~~~~~l~~~~~~~~~~~~~~~-------------- 481 (848)
+++.....|..+..++..+..+..+...+..+.+... ...+++...+++.++..+...|....
T Consensus 401 ~rl~~~~kp~~L~rLer~l~~L~~E~e~l~~e~~~~~~~~~~~l~~~l~~lq~e~~~L~eq~k~~k~el~~~~~~~~ele 480 (857)
T PRK10865 401 IRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELSDKERQYSELEEEWKAEKASLSGTQTIKAELE 480 (857)
T ss_pred cccccccChHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 9998888888888888888777766665544322210 01111111111111111111110000
Q ss_pred ---------------------------------h---hh--hccCCCCCccCHHHHHHHHHHhhCCCCcccCcchHHHHH
Q 003094 482 ---------------------------------K---AE--TEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLL 523 (848)
Q Consensus 482 ---------------------------------~---~~--~~~~~~~~~v~~~di~~~~~~~~g~p~~~~~~~~~~~l~ 523 (848)
. .. .........|+.+||..+++.|+|+|+.++..++...+.
T Consensus 481 ~l~~kie~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~vv~~~tgip~~~~~~~~~~~l~ 560 (857)
T PRK10865 481 QAKIAIEQARRVGDLARMSELQYGKIPELEKQLAAATQLEGKTMRLLRNKVTDAEIAEVLARWTGIPVSRMLESEREKLL 560 (857)
T ss_pred HHHHHHHHHHhhhhhhhHHHhhhhhhHHHHHHHHHHHhhhccccccccCccCHHHHHHHHHHHHCCCchhhhhhHHHHHH
Confidence 0 00 011123467999999999999999999999999999999
Q ss_pred HHHHHhhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccc
Q 003094 524 KMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMER 603 (848)
Q Consensus 524 ~l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~ 603 (848)
.+++.+++.|+||+.+++.|.+.+...+.|+..|++|.+++||+||||||||++|++||+.+++.+.+++.+||+++.+.
T Consensus 561 ~l~~~l~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~ 640 (857)
T PRK10865 561 RMEQELHHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEK 640 (857)
T ss_pred HHHHHhCCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999988889999999999988
Q ss_pred cchhcccCCCCCCcccccccchhHHHHcCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCC
Q 003094 604 HTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNV 683 (848)
Q Consensus 604 ~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~ 683 (848)
+..+.|+|.++||+|+.+++.+.+.++..|++||||||++++++++++.|+++|++|.+++..|+++++.|++||+|||.
T Consensus 641 ~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~ 720 (857)
T PRK10865 641 HSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNL 720 (857)
T ss_pred hhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeCCc
Confidence 88999999999999999888899999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHHHHHHHHHHHHhcC
Q 003094 684 GSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTK 763 (848)
Q Consensus 684 ~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~~~l~~~~~~~~~~ 763 (848)
++..+.+ .+|. ..+..+...+...+.+.|+|+|++|+|.++.|.|++.+++.+|++.++.++..++...
T Consensus 721 g~~~~~~---~~~~--------~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~l~~rl~~~ 789 (857)
T PRK10865 721 GSDLIQE---RFGE--------LDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEER 789 (857)
T ss_pred chHHHHH---hccc--------cchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 8876543 1221 1344556667777888999999999999999999999999999999999988888777
Q ss_pred CCeEeecHHHHHHHHHccCCCCCCchHHHHHHHHHHHHHHHHHHHccccCCCCEEEEEEcCCCcEEE
Q 003094 764 DIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDVDSDGNVTV 830 (848)
Q Consensus 764 ~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~l~~~l~~~~l~~~~~~~~~~~v~~~~~~~~~~ 830 (848)
+..+.++++++++|+.++|++.+|+|+|++.|++.+.++|++.+|.+.+.+|+++.|++++ |++.+
T Consensus 790 gi~l~is~~al~~L~~~gy~~~~GARpL~r~I~~~i~~~la~~iL~g~~~~~~~~~~~~~~-~~~~~ 855 (857)
T PRK10865 790 GYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQILSGELVPGKVIRLEVND-DRIVA 855 (857)
T ss_pred CCcCcCCHHHHHHHHHcCCCccCChHHHHHHHHHHHHHHHHHHHHcCcCCCCCEEEEEEEC-CEEee
Confidence 8888999999999999999999999999999999999999999999999999999999974 55543
No 5
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=100.00 E-value=2.4e-89 Score=828.70 Aligned_cols=716 Identities=53% Similarity=0.904 Sum_probs=627.3
Q ss_pred HhhHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHhhCCCchHHHHHHHcCCChHHHHHHHHHHhccccccccCCCCCCCC
Q 003094 94 RFTEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRTQVIRMVGESTEAVGAGVGGGSS 173 (848)
Q Consensus 94 ~~t~~a~~~l~~A~~~A~~~~~~~i~~eHlLlall~~~~~~a~~iL~~~gv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 173 (848)
.||+.++++++.|..+|..+|+.+|+++|||+||++++++ +..+|..+|++.+.+...+...... ....+ + ..
T Consensus 77 ~~S~~~~~vLe~A~~~A~~~g~~~I~teHLLlALl~e~~~-a~~iL~~~gi~~~~l~~~l~~~~~~-~~~~~---~--~~ 149 (852)
T TIGR03346 77 YLSPELNRLLNLAEKLAQKRGDEFISSEHLLLALLDDKGT-LGKLLKEAGATADALEAAINAVRGG-QKVTS---A--NA 149 (852)
T ss_pred CcCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHcCCcc-HHHHHHHcCCCHHHHHHHHHhhccC-ccccc---c--cc
Confidence 4899999999999999999999999999999999999876 6789999999999998877543211 11100 1 11
Q ss_pred CCCccchHHhhhhhhhhhhcCCCCCccCChHHHHHHHHHhccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCC
Q 003094 174 GNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEG 253 (848)
Q Consensus 174 ~~~~~~l~~~~~~l~~~~~~~~ld~iiG~~~~~~~l~~~l~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~ 253 (848)
..+.+.|.+|+.+|+++++++++|+++|++++++++.++|.++.++|++|+||||||||++++.+++.+..+.+|..+.+
T Consensus 150 ~~~~~~l~~~~~~l~~~~~~~~~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~ 229 (852)
T TIGR03346 150 EDQYEALEKYARDLTERAREGKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKN 229 (852)
T ss_pred ccchhHHHHHhhhHHHHhhCCCCCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcC
Confidence 23457999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEeCCcccccccccchHHHHHHHHHHHHHh-CCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCCceEEEEee
Q 003094 254 KKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQ-SDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGAT 332 (848)
Q Consensus 254 ~~v~~~~~~~l~~~~~~~g~~~~~l~~l~~~~~~-~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~at 332 (848)
.+++.++++.+..+.+|.|+++.+++.+++.+.. .+++||||||+|.+++.+...+..++.+.|++.++++.+.+||+|
T Consensus 230 ~~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g~i~~IgaT 309 (852)
T TIGR03346 230 KRLLALDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGELHCIGAT 309 (852)
T ss_pred CeEEEeeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcCceEEEEeC
Confidence 9999999999988899999999999999999865 458999999999999877767778899999999999999999999
Q ss_pred ChHHHHhhhhcChhhhcccCCCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCChhhHHHHH
Q 003094 333 TLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLI 412 (848)
Q Consensus 333 n~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~p~~a~~ll 412 (848)
|..+|+.++..|+++.|||+.|.++.|+.+++..|++.+..+|+.+|++.++++++..++.++.+|+.+|++|++|+++|
T Consensus 310 t~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~lPdkAidll 389 (852)
T TIGR03346 310 TLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPDKAIDLI 389 (852)
T ss_pred cHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccCCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHcCCChHH---HHHHHHHHHHHHHHHHHHHHhhhhhh--------
Q 003094 413 DEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEK---AGELRDREMDLKAQISALVDKGKEMS-------- 481 (848)
Q Consensus 413 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---a~~~~~~~~~l~~~~~~~~~~~~~~~-------- 481 (848)
|+||+.+++.....|..+..++.++..+..+.+.+.+..+... ...+.+...+++.++..+...|....
T Consensus 390 d~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (852)
T TIGR03346 390 DEAAARIRMEIDSKPEELDELDRRIIQLEIEREALKKEKDEASKERLEDLEKELAELEEEYADLEEQWKAEKAAIQGIQQ 469 (852)
T ss_pred HHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998888888888888888877777666654432111 11111222222222222222221100
Q ss_pred -------------------------------------------h---hhhccCCCCCccCHHHHHHHHHHhhCCCCcccC
Q 003094 482 -------------------------------------------K---AETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVS 515 (848)
Q Consensus 482 -------------------------------------------~---~~~~~~~~~~~v~~~di~~~~~~~~g~p~~~~~ 515 (848)
. ...........|+.+||..+++.|+|+|+..+.
T Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~i~~v~~~~tgip~~~~~ 549 (852)
T TIGR03346 470 IKEEIEQVRLELEQAEREGDLAKAAELQYGKLPELEKRLQAAEAKLGEETKPRLLREEVTAEEIAEVVSRWTGIPVSKML 549 (852)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHhhhcchHHHHHHHHHHHHHhhhccccccccCCcCHHHHHHHHHHhcCCCccccc
Confidence 0 000011234679999999999999999999999
Q ss_pred cchHHHHHHHHHHhhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEe
Q 003094 516 TDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRL 595 (848)
Q Consensus 516 ~~~~~~l~~l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i 595 (848)
.++...+.++++.|.+.|+||+.+++.|...+...+.++..|++|.+++||+||+|||||++|++||+.+++.+.+++++
T Consensus 550 ~~e~~~l~~l~~~l~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~ 629 (852)
T TIGR03346 550 EGEREKLLHMEEVLHERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRI 629 (852)
T ss_pred HHHHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccchhcccCCCCCCcccccccchhHHHHcCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecCCe
Q 003094 596 DMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNT 675 (848)
Q Consensus 596 ~~~~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~ 675 (848)
||+++.+.+.++.++|.++||+|+.+++.+++.++..|++|||||||++++|++++.|+++|++|.+++..|+.+++.|+
T Consensus 630 d~s~~~~~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~ 709 (852)
T TIGR03346 630 DMSEYMEKHSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNT 709 (852)
T ss_pred echhhcccchHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHHHHHHH
Q 003094 676 LLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKE 755 (848)
Q Consensus 676 iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~~~l~~ 755 (848)
+||+|||.+...+.+... ...+..+...+.+.+.+.|+|+|++|||.+++|.||+.+++.+|+...+..
T Consensus 710 iiI~TSn~g~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~ 778 (852)
T TIGR03346 710 VIIMTSNLGSQFIQELAG-----------GDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGR 778 (852)
T ss_pred EEEEeCCcchHhHhhhcc-----------cccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHH
Confidence 999999998876543110 012445667777888999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHHHHHHHHHHHHHHccccCCCCEEEEEEcCCCcE
Q 003094 756 VFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDVDSDGNV 828 (848)
Q Consensus 756 ~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~l~~~l~~~~l~~~~~~~~~~~v~~~~~~~~ 828 (848)
+.+++...++.+.++++++++|++++|++++|+|+|++.|++.+.++|++.++.+.+.+|+++.|++++ |++
T Consensus 779 l~~~l~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~l~~~~l~~~~~~~~~~~~~~~~-~~~ 850 (852)
T TIGR03346 779 LRKRLAERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREIENPLAKKILAGEVADGDTIVVDVEG-GRL 850 (852)
T ss_pred HHHHHHHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEeeC-CEE
Confidence 998887778889999999999999999999999999999999999999999999999999999999963 554
No 6
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=100.00 E-value=2e-89 Score=819.19 Aligned_cols=652 Identities=47% Similarity=0.804 Sum_probs=590.1
Q ss_pred HhhHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHhhCCCchHHHHHHHcCCChHHHHHHHHHHhcc-ccc-cccCCCCCC
Q 003094 94 RFTEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRTQVIRMVGE-STE-AVGAGVGGG 171 (848)
Q Consensus 94 ~~t~~a~~~l~~A~~~A~~~~~~~i~~eHlLlall~~~~~~a~~iL~~~gv~~~~l~~~~~~~~~~-~~~-~~~~~~~~~ 171 (848)
.||+.++++++.|..+|..+|+.+|+++|||+||++++++.+..+|..+|++.+.+...+...... ... ...+.....
T Consensus 77 ~~S~~lk~vL~~A~~~A~~~g~~~I~teHLLLALl~~~~~~a~~lL~~~gi~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 156 (731)
T TIGR02639 77 EQTVGVQRVLQRALLHVKSAGKKEIGIGDILVALFDEEDSHASYFLKSQGITRLDILEYISHGIPKDDGKNRDAEEAGKE 156 (731)
T ss_pred CcCHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHhcCcccHHHHHHHHcCCCHHHHHHHHHhhccccccccccccccccc
Confidence 479999999999999999999999999999999999998889999999999999987776531111 000 000000001
Q ss_pred CCCCCccchHHhhhhhhhhhhcCCCCCccCChHHHHHHHHHhccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCC
Q 003094 172 SSGNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTI 251 (848)
Q Consensus 172 ~~~~~~~~l~~~~~~l~~~~~~~~ld~iiG~~~~~~~l~~~l~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l 251 (848)
....+.+.|.+|+.+|+++++++++|+++||+++++++.++|.++.++|+||+||||||||++++.+|+.+..+.+|..+
T Consensus 157 ~~~~~~~~l~~~~~~l~~~~r~~~l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l 236 (731)
T TIGR02639 157 EAKKQEDALEKYTVDLTEKAKNGKIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENL 236 (731)
T ss_pred ccccchhHHHHHhhhHHHHHhcCCCCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhh
Confidence 11134578999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEeCCcccccccccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCC-CchHHHHHHHhhhhcCCceEEEE
Q 003094 252 EGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAA-EGAIDAANILKPSLARGELQCIG 330 (848)
Q Consensus 252 ~~~~v~~~~~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~-~~~~~~~~~L~~~l~~~~v~vI~ 330 (848)
.+.+++.++++.+..+.++.|+++.+++.+++++....++||||||+|.+++.+.. .+..++.+.|++.++++.+.+||
T Consensus 237 ~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g~i~~Ig 316 (731)
T TIGR02639 237 KNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSGKLRCIG 316 (731)
T ss_pred cCCeEEEecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCCCeEEEE
Confidence 99999999999999999999999999999999998778899999999999987653 34567899999999999999999
Q ss_pred eeChHHHHhhhhcChhhhcccCCCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCChhhHHH
Q 003094 331 ATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAID 410 (848)
Q Consensus 331 atn~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~p~~a~~ 410 (848)
+||..+|.++++.|+++.|||+.|.|++|+.+++.+|++.+..+++.+|++.++++++..++.++.+|++++++|++|++
T Consensus 317 aTt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~kai~ 396 (731)
T TIGR02639 317 STTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDKAID 396 (731)
T ss_pred ecCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHHHHH
Confidence 99999999999999999999999999999999999999999999998999999999999999999999999999999999
Q ss_pred HHHHHhhHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCC
Q 003094 411 LIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDV 490 (848)
Q Consensus 411 ll~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 490 (848)
++|+|++.++++.... .
T Consensus 397 lld~a~a~~~~~~~~~---------------------------------------------------------------~ 413 (731)
T TIGR02639 397 VIDEAGASFRLRPKAK---------------------------------------------------------------K 413 (731)
T ss_pred HHHHhhhhhhcCcccc---------------------------------------------------------------c
Confidence 9999998766541110 1
Q ss_pred CCccCHHHHHHHHHHhhCCCCcccCcchHHHHHHHHHHhhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCC
Q 003094 491 GPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPT 570 (848)
Q Consensus 491 ~~~v~~~di~~~~~~~~g~p~~~~~~~~~~~l~~l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~ 570 (848)
...|+.+|+..+++.|+|+|+..+..++...+..+++.|.+.|+||+++++.|.+.+...+.++..|++|.+++||+|||
T Consensus 414 ~~~v~~~~i~~~i~~~tgiP~~~~~~~~~~~l~~l~~~l~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~ 493 (731)
T TIGR02639 414 KANVSVKDIENVVAKMAHIPVKTVSVDDREKLKNLEKNLKAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPT 493 (731)
T ss_pred ccccCHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCC
Confidence 34589999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHhcCCCCceEEecccccccccchhcccCCCCCCcccccccchhHHHHcCCCeEEEEcCCCcCChHHH
Q 003094 571 GVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVF 650 (848)
Q Consensus 571 GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~~~ 650 (848)
|||||++|++||+.+ +.+++++||+++.+.+.++.++|+++||+|+.+++.+.++++..|++||||||||+++|+++
T Consensus 494 GvGKT~lA~~la~~l---~~~~~~~d~se~~~~~~~~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~~~~~ 570 (731)
T TIGR02639 494 GVGKTELAKQLAEAL---GVHLERFDMSEYMEKHTVSRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAHPDIY 570 (731)
T ss_pred CccHHHHHHHHHHHh---cCCeEEEeCchhhhcccHHHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhcCHHHH
Confidence 999999999999998 57899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhc
Q 003094 651 NMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNR 730 (848)
Q Consensus 651 ~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R 730 (848)
+.|+++|++|.+++..|+.++++|++||+|||.+...+.+ ..+||.. ....+.+...+...|+|+|++|
T Consensus 571 ~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~~~~~--~~~~f~~---------~~~~~~~~~~~~~~f~pef~~R 639 (731)
T TIGR02639 571 NILLQVMDYATLTDNNGRKADFRNVILIMTSNAGASEMSK--PPIGFGS---------ENVESKSDKAIKKLFSPEFRNR 639 (731)
T ss_pred HHHHHhhccCeeecCCCcccCCCCCEEEECCCcchhhhhh--ccCCcch---------hhhHHHHHHHHHhhcChHHHhc
Confidence 9999999999999999999999999999999999876644 2355531 1123456778888999999999
Q ss_pred cCeEEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHHHHHHHHHHHHHHcc
Q 003094 731 LDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSMAEKMLAR 810 (848)
Q Consensus 731 ~d~~i~f~~l~~~el~~I~~~~l~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~l~~~l~~~~l~~ 810 (848)
+|.+|+|.||+.+++.+|++..+.++.+++...++.+.++++++++|++++|++.+|+|+|+++|++.+.++|++.+|.+
T Consensus 640 id~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~~~~l~~~~l~~ 719 (731)
T TIGR02639 640 LDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNIKLELTDDAKKYLAEKGYDEEFGARPLARVIQEEIKKPLSDEILFG 719 (731)
T ss_pred CCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEeCHHHHHHHHHhCCCcccCchHHHHHHHHHhHHHHHHHHHhC
Confidence 99999999999999999999999999999988899999999999999999999999999999999999999999999999
Q ss_pred ccCCCCEEEEEE
Q 003094 811 EIKEGDSVIVDV 822 (848)
Q Consensus 811 ~~~~~~~~~v~~ 822 (848)
.+..|+++.|++
T Consensus 720 ~~~~~~~~~~~~ 731 (731)
T TIGR02639 720 KLKKGGSVKVDL 731 (731)
T ss_pred cCCCCCEEEEeC
Confidence 999999998863
No 7
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-88 Score=795.63 Aligned_cols=656 Identities=42% Similarity=0.727 Sum_probs=587.7
Q ss_pred HhhHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHhhCCCchHHHHHHHcCCChHHHHHHHHHHhcccccc-ccCCCCC--
Q 003094 94 RFTEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRTQVIRMVGESTEA-VGAGVGG-- 170 (848)
Q Consensus 94 ~~t~~a~~~l~~A~~~A~~~~~~~i~~eHlLlall~~~~~~a~~iL~~~gv~~~~l~~~~~~~~~~~~~~-~~~~~~~-- 170 (848)
.++...++++..|..+|+.+++.+|+++|||+||++++++.+..+|..+|++...+...+.......... .+...+.
T Consensus 79 ~~~~~~~~~l~~a~~~~~~~~~~~i~~~~ll~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (758)
T PRK11034 79 QPTLSFQRVLQRAVFHVQSSGRSEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGTRKDEPSQSSDPGSQPN 158 (758)
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHhcCCcchHHHHHHHcCCCHHHHHHHHHhCCcccccccccccccccc
Confidence 3577889999999999999999999999999999999988999999999999887765532210000000 0000010
Q ss_pred -CCCCCCccchHHhhhhhhhhhhcCCCCCccCChHHHHHHHHHhccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCC
Q 003094 171 -GSSGNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPD 249 (848)
Q Consensus 171 -~~~~~~~~~l~~~~~~l~~~~~~~~ld~iiG~~~~~~~l~~~l~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~ 249 (848)
..+..+.+.|++|+.+|++.++.+++++++|++++++++.++|.+..++|+||+||||||||++|+.+++.+..+.+|.
T Consensus 159 ~~~~~~~~~~l~~~~~~l~~~a~~g~~~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~ 238 (758)
T PRK11034 159 SEEQAGGEERMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPE 238 (758)
T ss_pred ccccccchhHHHHHHHhHHHHHHcCCCCcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCc
Confidence 0011234699999999999999999999999999999999999999999999999999999999999999998888999
Q ss_pred CCCCceEEEEeCCcccccccccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCC-CchHHHHHHHhhhhcCCceEE
Q 003094 250 TIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAA-EGAIDAANILKPSLARGELQC 328 (848)
Q Consensus 250 ~l~~~~v~~~~~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~-~~~~~~~~~L~~~l~~~~v~v 328 (848)
.+.+..++.++++.+..|.+|+|+++.+++.+++.+.+.+++||||||+|.+++.+.. .+..++.++|+++++++++.+
T Consensus 239 ~l~~~~~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i~v 318 (758)
T PRK11034 239 VMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRV 318 (758)
T ss_pred hhcCCeEEeccHHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCeEE
Confidence 9999999999999999899999999999999999998888899999999999987753 456789999999999999999
Q ss_pred EEeeChHHHHhhhhcChhhhcccCCCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCChhhH
Q 003094 329 IGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKA 408 (848)
Q Consensus 329 I~atn~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~p~~a 408 (848)
|++||..+|.+++..|++|.|||+.|.|++|+.+++.+||+.+..+|+.+|++.++++++..++.++.+|+.++++|++|
T Consensus 319 IgATt~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKa 398 (758)
T PRK11034 319 IGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKA 398 (758)
T ss_pred EecCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccC
Q 003094 409 IDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAG 488 (848)
Q Consensus 409 ~~ll~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 488 (848)
++++|+||+.+++....
T Consensus 399 idlldea~a~~~~~~~~--------------------------------------------------------------- 415 (758)
T PRK11034 399 IDVIDEAGARARLMPVS--------------------------------------------------------------- 415 (758)
T ss_pred HHHHHHHHHhhccCccc---------------------------------------------------------------
Confidence 99999999876652100
Q ss_pred CCCCccCHHHHHHHHHHhhCCCCcccCcchHHHHHHHHHHhhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeec
Q 003094 489 DVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSG 568 (848)
Q Consensus 489 ~~~~~v~~~di~~~~~~~~g~p~~~~~~~~~~~l~~l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~G 568 (848)
.....|+.+|+..+++.|+|+|+..+..++...+..+++.|.+.|+||+++++.|..++...+.|+..+++|.+++||+|
T Consensus 416 ~~~~~v~~~~i~~v~~~~tgip~~~~~~~~~~~l~~l~~~L~~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~G 495 (758)
T PRK11034 416 KRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAG 495 (758)
T ss_pred ccccccChhhHHHHHHHHhCCChhhhhhhHHHHHHHHHHHhcceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEEC
Confidence 00124788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhcccCCCCCCcccccccchhHHHHcCCCeEEEEcCCCcCChH
Q 003094 569 PTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPD 648 (848)
Q Consensus 569 p~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~ 648 (848)
|||||||++|+.+|+.+ +.+++.+||+++.+.+.++.|+|.++||+|+..++.+++.+++.|++||||||||+++++
T Consensus 496 P~GvGKT~lAk~LA~~l---~~~~i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~~ 572 (758)
T PRK11034 496 PTGVGKTEVTVQLSKAL---GIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPD 572 (758)
T ss_pred CCCCCHHHHHHHHHHHh---CCCcEEeechhhcccccHHHHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhhhHH
Confidence 99999999999999998 579999999999999999999999999999988899999999999999999999999999
Q ss_pred HHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhh
Q 003094 649 VFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFL 728 (848)
Q Consensus 649 ~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll 728 (848)
+++.|+++|++|.+++..|+.++++|++||+|||.+...+.. ..+||..... ...+.+++...|+|+|+
T Consensus 573 v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~~~~~~--~~~g~~~~~~---------~~~~~~~~~~~f~pefl 641 (758)
T PRK11034 573 VFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETER--KSIGLIHQDN---------STDAMEEIKKIFTPEFR 641 (758)
T ss_pred HHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcCHHHHhh--cccCcccchh---------hHHHHHHHHHhcCHHHH
Confidence 999999999999999999999999999999999998776543 2456532111 12344677888999999
Q ss_pred hccCeEEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 003094 729 NRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSMAEKML 808 (848)
Q Consensus 729 ~R~d~~i~f~~l~~~el~~I~~~~l~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~l~~~l~~~~l 808 (848)
+|+|.+|+|+||+.+++.+|++..+.++.+++..+++.+.++++++++|++.+|++.+|+|+|++.|++.+.++|++.+|
T Consensus 642 ~Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~l~~~la~~il 721 (758)
T PRK11034 642 NRLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGVSLEVSQEARDWLAEKGYDRAMGARPMARVIQDNLKKPLANELL 721 (758)
T ss_pred ccCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCCCCceECHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999889999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCEEEEEEcCCC
Q 003094 809 AREIKEGDSVIVDVDSDG 826 (848)
Q Consensus 809 ~~~~~~~~~~~v~~~~~~ 826 (848)
.+.+.+|+++.|++++++
T Consensus 722 ~~~~~~~~~~~v~~~~~~ 739 (758)
T PRK11034 722 FGSLVDGGQVTVALDKEK 739 (758)
T ss_pred hCcccCCCEEEEEEECCc
Confidence 999999999999998765
No 8
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7e-84 Score=745.67 Aligned_cols=733 Identities=51% Similarity=0.758 Sum_probs=631.1
Q ss_pred hhhHHhhHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHhhCCCchHHHHHHHcC-CChHHHHHHHHHHhccccccccCC-
Q 003094 90 AMFERFTEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLENLG-ADPSNIRTQVIRMVGESTEAVGAG- 167 (848)
Q Consensus 90 ~~~~~~t~~a~~~l~~A~~~A~~~~~~~i~~eHlLlall~~~~~~a~~iL~~~g-v~~~~l~~~~~~~~~~~~~~~~~~- 167 (848)
++++.||++|..+|..|+.+|++.||.+++|+|++.+||.+++|++.++|...+ ++...+..-+...+.+.|.+.+.+
T Consensus 7 t~~q~lT~~Aa~~L~~a~~~Arrrgh~qvtplH~~~~LLs~~t~~lr~ac~~~~~l~~ralelc~~v~l~rlpt~~~p~~ 86 (898)
T KOG1051|consen 7 TVQQTLTEEAATVLKQAVTEARRRGHAQVTPLHVASTLLSSPTGILRRACIKSHPLQCRALELCFNVSLNRLPTSYGPPV 86 (898)
T ss_pred chHhhhCHHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHcCCchHHHHHHHhcCcccHHHHHHHHHHHHHhccCCCCCcc
Confidence 467889999999999999999999999999999999999999999999999888 777776655544444433322210
Q ss_pred --------------------------------------------------CC-----------------CCCC---CCCc
Q 003094 168 --------------------------------------------------VG-----------------GGSS---GNKM 177 (848)
Q Consensus 168 --------------------------------------------------~~-----------------~~~~---~~~~ 177 (848)
.| +..+ ..+.
T Consensus 87 sn~l~aalkr~qa~qrr~~~~~~~~~vkvE~~~li~silDdp~vsrv~reag~~s~~vK~~ve~~~g~~~~~~~~~~~~~ 166 (898)
T KOG1051|consen 87 SNALMAALKRAQAHQRRGCEEQQQQAVKVELEQLILSILDDPSVSRVMREAGFSSSAVKSAVEQPVGQFRSPSRGPLWPL 166 (898)
T ss_pred chHhHHHHHHHHHHHHhcchhhccchhhHhHHhhheeeecCchHHHHHHHhcCChHHHHHHHHhhccccCCCCcCCccch
Confidence 00 0011 2347
Q ss_pred cchHHhhhhhhhhhhcCCCCCccCC-hHHHHHHHHHhccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceE
Q 003094 178 PTLEEYGTNLTKLAEEGKLDPVVGR-QPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKV 256 (848)
Q Consensus 178 ~~l~~~~~~l~~~~~~~~ld~iiG~-~~~~~~l~~~l~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v 256 (848)
+.|.+|+.+++++++.+++++++|+ ++++++++++|.++.++|++|+|.||+|||.++..+++++..|.+|..+.+..+
T Consensus 167 ~~L~~~~~dl~p~a~~gkldPvigr~deeirRvi~iL~Rrtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l 246 (898)
T KOG1051|consen 167 LFLENYGTDLTPRARQGKLDPVIGRHDEEIRRVIEILSRKTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKL 246 (898)
T ss_pred hHHHhcccccChhhhccCCCCccCCchHHHHHHHHHHhccCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccce
Confidence 8999999999999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCcccccccccchHHHHHHHHHHHHH-hCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCCceEEEEeeChH
Q 003094 257 ITLDMGLLVAGTKYRGEFEERLKKLMEEIK-QSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATTLD 335 (848)
Q Consensus 257 ~~~~~~~l~~~~~~~g~~~~~l~~l~~~~~-~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~atn~~ 335 (848)
+.++++.+..|.+++|+++.+++.+.+++. .++++||||||+|++.+.+...+..+..+.|++.+.++++++||+|+..
T Consensus 247 ~~l~~g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~~~~~d~~nlLkp~L~rg~l~~IGatT~e 326 (898)
T KOG1051|consen 247 IALDFGSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSNYGAIDAANLLKPLLARGGLWCIGATTLE 326 (898)
T ss_pred EEEEhhhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCcchHHHHHHhhHHHHhcCCeEEEecccHH
Confidence 999999999999999999999999999998 5678999999999999988777788999999999999999999999999
Q ss_pred HHHhhhhcChhhhcccCCCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCChhhHHHHHHHH
Q 003094 336 EYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEA 415 (848)
Q Consensus 336 ~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~p~~a~~ll~~a 415 (848)
+|+++++.+|++.+||+.+.++.|+.++...||..+..+|+.+|+..++++++...+.++.+|+..+++|++++++.++|
T Consensus 327 ~Y~k~iekdPalErrw~l~~v~~pS~~~~~~iL~~l~~~~e~~hg~~~s~~a~~~a~~~s~~~~t~r~lpd~aidl~dEa 406 (898)
T KOG1051|consen 327 TYRKCIEKDPALERRWQLVLVPIPSVENLSLILPGLSERYEVHHGVRISDESLFSAAQLSARYITLSFLPDCAIDLEDEA 406 (898)
T ss_pred HHHHHHhhCcchhhCcceeEeccCcccchhhhhhhhhhhhccccCCcccccccccccchhhhhcccCcCchhcccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHcCCC--------hHHHH-------HHHHHHHHHHHHHHHHHHhhhhh
Q 003094 416 GSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQD--------FEKAG-------ELRDREMDLKAQISALVDKGKEM 480 (848)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--------~~~a~-------~~~~~~~~l~~~~~~~~~~~~~~ 480 (848)
++..+.....+|.+++.++........++..+.+..+ ++... .+......-+..++.+.......
T Consensus 407 ~a~~~~~~~~lP~wL~~~~~~~~~~~~e~~~L~kk~d~~~h~r~~~~~~~~~~~~~~~l~~~~~~~~s~~~~l~~~~~~~ 486 (898)
T KOG1051|consen 407 AALVKSQAESLPPWLQNLERVDIKLQDEISELQKKWNQALHKRPSLESLAPSKPTQQPLSASVDSERSVIEELKLKKNSL 486 (898)
T ss_pred HHHHhhhhhhCCHHHHhhhhhhhhhHHHHHHHHHhhhhhhccccccccccccccccccchhhhccchhHHhhhccccCCc
Confidence 9999999999999999887776665555554444443 11100 00000000001111110000000
Q ss_pred hhhh-hccCCCCC------------------------ccCHHHHHHHHHHhhCCCCcccCcchHHHHHHHHHHhhccccC
Q 003094 481 SKAE-TEAGDVGP------------------------VVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIG 535 (848)
Q Consensus 481 ~~~~-~~~~~~~~------------------------~v~~~di~~~~~~~~g~p~~~~~~~~~~~l~~l~~~l~~~vig 535 (848)
.... ....+... ..++.++..+.+.|+|+|+......+..++..|++.|.+.|+|
T Consensus 487 ~~~~~~~k~~r~~d~~~~~~l~~~~~p~~~~~~~~~~~~~~~~i~~~~s~~tgip~~~~~~~e~~~l~~L~~~L~~~V~g 566 (898)
T KOG1051|consen 487 DRNSLLAKAHRPNDYTRETDLRYGRIPDELSEKSNDNQGGESDISEVVSRWTGIPVDRLAEAEAERLKKLEERLHERVIG 566 (898)
T ss_pred ccchhhhcccCCCCcchhhhccccccchhhhhhcccccCCccchhhhhhhhcCCchhhhhhhHHHHHHHHHHHHHhhccc
Confidence 0000 00000000 1166799999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhcccCCCCC
Q 003094 536 QDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPG 615 (848)
Q Consensus 536 q~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g 615 (848)
|++++..|..++.+.+.|+.+| +|..|++|.||+|+|||.+|+++|..+|++...|+++||++|++ +++++|.|+|
T Consensus 567 Q~eAv~aIa~AI~~sr~gl~~~-~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~e---vskligsp~g 642 (898)
T KOG1051|consen 567 QDEAVAAIAAAIRRSRAGLKDP-NPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQE---VSKLIGSPPG 642 (898)
T ss_pred hHHHHHHHHHHHHhhhcccCCC-CCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhh---hhhccCCCcc
Confidence 9999999999999999999998 88999999999999999999999999999999999999999987 9999999999
Q ss_pred CcccccccchhHHHHcCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCchhhhccCccc
Q 003094 616 YVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRI 695 (848)
Q Consensus 616 ~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~i~~~~~~~ 695 (848)
|+|+++++.|++++++.|++||+|||||++|+++++.|+++||+|+++|+.|+.++++|+|||||+|.+...+.......
T Consensus 643 yvG~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~IMTsn~~~~~i~~~~~~~ 722 (898)
T KOG1051|consen 643 YVGKEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDRGRLTDSHGREVDFKNAIFIMTSNVGSSAIANDASLE 722 (898)
T ss_pred cccchhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHhcCccccCCCcEeeccceEEEEecccchHhhhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988776644433
Q ss_pred ccccCCCcccccHHHHHHHHHHHHH----hhcChhhhhccCeEEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCeEeecH
Q 003094 696 GFDLDYDEKDSSYNRIKSLVTEELK----QYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTE 771 (848)
Q Consensus 696 ~f~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~ll~R~d~~i~f~~l~~~el~~I~~~~l~~~~~~~~~~~~~l~i~~ 771 (848)
++..+.......+...+..+.+... .+|+|+|++|+|.++.|.+++.+++.+|+...+.+..+++...+....+++
T Consensus 723 ~~l~~~~~~~~~~~~~k~~v~~~~~~~~~~~~r~Ef~nrid~i~lf~~l~~~~~~~i~~~~~~e~~~r~~~~~~~~~v~~ 802 (898)
T KOG1051|consen 723 EKLLDMDEKRGSYRLKKVQVSDAVRIYNKQFFRKEFLNRIDELDLNLPLDRDELIEIVNKQLTEIEKRLEERELLLLVTD 802 (898)
T ss_pred cccccchhhhhhhhhhhhhhhhhhhcccccccChHHhcccceeeeecccchhhHhhhhhhHHHHHHHHhhhhHHHHHHHH
Confidence 3444455555666667777778887 899999999999999999999999999999999999988877777777999
Q ss_pred HHHHHHHHccCCCCCCchHHHHHHHHHHHHHHHHHHHccccCCCCEEEEEEcCCCc
Q 003094 772 RFRERVVEEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDVDSDGN 827 (848)
Q Consensus 772 ~a~~~l~~~~~~~~~g~r~L~~~i~~~l~~~l~~~~l~~~~~~~~~~~v~~~~~~~ 827 (848)
.+.+++...+|++.||+|++++.|++.+.+.++..++ .+++++.++.|+++..+.
T Consensus 803 ~~~~~v~~~~~d~~ygAr~ikr~i~~~~~~~la~~~l-~ei~~~~~~~i~~~~~~~ 857 (898)
T KOG1051|consen 803 RVDDKVLFKGYDFDYGARPIKRSIEERFENRLAEALL-GEVEDGLTERILVADGWS 857 (898)
T ss_pred HHHhhhhhcCcChHHHhhHHHHHHHHHHHHHHhhhhe-eeecCCceEEEEeccccc
Confidence 9999999999999999999999999999999999999 999999999999977433
No 9
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-46 Score=406.44 Aligned_cols=501 Identities=22% Similarity=0.324 Sum_probs=345.0
Q ss_pred CCCCCccCChHHHHHHHHH------------hccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeC
Q 003094 194 GKLDPVVGRQPQIERVVQI------------LGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDM 261 (848)
Q Consensus 194 ~~ld~iiG~~~~~~~l~~~------------l~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~ 261 (848)
.+|.++-|.+..+.+|.++ ++..+++++||+||||||||++|+++|.++ +.+++.+..
T Consensus 187 v~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel----------~vPf~~isA 256 (802)
T KOG0733|consen 187 VSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL----------GVPFLSISA 256 (802)
T ss_pred cchhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc----------CCceEeecc
Confidence 3588999999988877665 345788999999999999999999999999 788999999
Q ss_pred CcccccccccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCCc---hHHHHHHHhhhhc--------CCceEEEE
Q 003094 262 GLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEG---AIDAANILKPSLA--------RGELQCIG 330 (848)
Q Consensus 262 ~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~~---~~~~~~~L~~~l~--------~~~v~vI~ 330 (848)
..+++| +.|+.|++++.+|+.++...|||+||||||.+.+.+.... ...++..|+..|+ ...++|||
T Consensus 257 peivSG--vSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIg 334 (802)
T KOG0733|consen 257 PEIVSG--VSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIG 334 (802)
T ss_pred hhhhcc--cCcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEe
Confidence 999966 6799999999999999999999999999999988765432 2346666666664 35699999
Q ss_pred eeChHHHHhhhhcChhhhc--ccC-CCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCChhh
Q 003094 331 ATTLDEYRKHIEKDPALER--RFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDK 407 (848)
Q Consensus 331 atn~~~~~~~~~~d~al~~--Rf~-~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~p~~ 407 (848)
+||+++ .+||+|+| ||+ .|.+..|+..+|.+||+.+++.+.... +-.+..++.++.||++. +
T Consensus 335 ATnRPD-----slDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g-----~~d~~qlA~lTPGfVGA-----D 399 (802)
T KOG0733|consen 335 ATNRPD-----SLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSG-----DFDFKQLAKLTPGFVGA-----D 399 (802)
T ss_pred cCCCCc-----ccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCC-----CcCHHHHHhcCCCccch-----h
Confidence 999999 79999999 997 899999999999999999998543222 23577899999999887 5
Q ss_pred HHHHHHHHhhHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHcCCChHHHHH-HH-----HHHHHHHHHHHHHHHhhhhhh
Q 003094 408 AIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGE-LR-----DREMDLKAQISALVDKGKEMS 481 (848)
Q Consensus 408 a~~ll~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~-~~-----~~~~~l~~~~~~~~~~~~~~~ 481 (848)
...|..+|+..+--|......... .+ ....+...+.+++.... +. +...++..-+...+..|.+..
T Consensus 400 L~AL~~~Aa~vAikR~ld~~~~p~---~~-----~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~ 471 (802)
T KOG0733|consen 400 LMALCREAAFVAIKRILDQSSSPL---TK-----VPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPL 471 (802)
T ss_pred HHHHHHHHHHHHHHHHhhcccCcc---cc-----CCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCc
Confidence 666777776544333211100000 00 00000000011111110 00 000111111111111221111
Q ss_pred hhhhccCCCCCccCHHHHHHHHHHhh------C-CCCcccCcchHHHHHHHHHHhhccccChHHHHHHHHHHHHHHHccC
Q 003094 482 KAETEAGDVGPVVTEVDIQHIVSAWT------G-IPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGL 554 (848)
Q Consensus 482 ~~~~~~~~~~~~v~~~di~~~~~~~~------g-~p~~~~~~~~~~~l~~l~~~l~~~vigq~~~~~~l~~~~~~~~~~~ 554 (848)
. ........+..+|+...++..- | .-+..++|++...+.+++.+|...|++. +.+.-...+.|+
T Consensus 472 S---~E~~~~L~i~~eDF~~Al~~iQPSakREGF~tVPdVtW~dIGaL~~vR~eL~~aI~~P------iK~pd~~k~lGi 542 (802)
T KOG0733|consen 472 S---KELLEGLSIKFEDFEEALSKIQPSAKREGFATVPDVTWDDIGALEEVRLELNMAILAP------IKRPDLFKALGI 542 (802)
T ss_pred C---hHHhccceecHHHHHHHHHhcCcchhcccceecCCCChhhcccHHHHHHHHHHHHhhh------ccCHHHHHHhCC
Confidence 1 1112345688888877765421 1 1233456666666666666554444332 111112234576
Q ss_pred CCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhcccCCCCCCcccccc--cchhHHHHcC
Q 003094 555 KNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEG--GQLTEAVRRR 632 (848)
Q Consensus 555 ~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~~g~~~~--~~l~~~~~~~ 632 (848)
..|. .+|||||||||||.+|+++|+.. +.+|+.+...++.+. |||++|. +++|..++.+
T Consensus 543 ~~Ps----GvLL~GPPGCGKTLlAKAVANEa---g~NFisVKGPELlNk------------YVGESErAVR~vFqRAR~s 603 (802)
T KOG0733|consen 543 DAPS----GVLLCGPPGCGKTLLAKAVANEA---GANFISVKGPELLNK------------YVGESERAVRQVFQRARAS 603 (802)
T ss_pred CCCC----ceEEeCCCCccHHHHHHHHhhhc---cCceEeecCHHHHHH------------HhhhHHHHHHHHHHHhhcC
Confidence 6654 49999999999999999999986 899999999998775 9999887 6788889999
Q ss_pred CCeEEEEcCCCcCCh-----------HHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCchhhhccCcccccccCC
Q 003094 633 PYTVVLFDEIEKAHP-----------DVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDY 701 (848)
Q Consensus 633 ~~~Vl~lDEid~l~~-----------~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~ 701 (848)
.+|||||||+|.+-| .++|.||..|+...-. .++.+|.+||.+.-
T Consensus 604 aPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R---------~gV~viaATNRPDi--------------- 659 (802)
T KOG0733|consen 604 APCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEER---------RGVYVIAATNRPDI--------------- 659 (802)
T ss_pred CCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccc---------cceEEEeecCCCcc---------------
Confidence 999999999999855 4999999999985422 57788999995552
Q ss_pred CcccccHHHHHHHHHHHHHhhcChhhh--hccCeEEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCeEeecHHHHHHHHH
Q 003094 702 DEKDSSYNRIKSLVTEELKQYFRPEFL--NRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVE 779 (848)
Q Consensus 702 ~~~~~~~~~~~~~~~~~l~~~~~~~ll--~R~d~~i~f~~l~~~el~~I~~~~l~~~~~~~~~~~~~l~i~~~a~~~l~~ 779 (848)
++|+++ +|||.+++..+++.+|...|++...+.. +.-..-+++ ++.|+.
T Consensus 660 ---------------------IDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~-----k~pl~~dVd---l~eia~ 710 (802)
T KOG0733|consen 660 ---------------------IDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNT-----KPPLSSDVD---LDEIAR 710 (802)
T ss_pred ---------------------cchhhcCCCccCceeeecCCCHHHHHHHHHHHhccC-----CCCCCcccC---HHHHhh
Confidence 457777 7999999999999999999998777530 001111222 234444
Q ss_pred ccCCCCCCchHHHHHHHHHHHHHHHHHHHcc
Q 003094 780 EGYNPSYGARPLRRAIMRLLEDSMAEKMLAR 810 (848)
Q Consensus 780 ~~~~~~~g~r~L~~~i~~~l~~~l~~~~l~~ 810 (848)
..--..|..-+|.-.++..-.-+|-+.+...
T Consensus 711 ~~~c~gftGADLaaLvreAsi~AL~~~~~~~ 741 (802)
T KOG0733|consen 711 NTKCEGFTGADLAALVREASILALRESLFEI 741 (802)
T ss_pred cccccCCchhhHHHHHHHHHHHHHHHHHhhc
Confidence 3221244556788888888888888777643
No 10
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.1e-41 Score=369.07 Aligned_cols=437 Identities=24% Similarity=0.343 Sum_probs=321.2
Q ss_pred CCccCChHHHHHHHHH-------------hccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCc
Q 003094 197 DPVVGRQPQIERVVQI-------------LGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGL 263 (848)
Q Consensus 197 d~iiG~~~~~~~l~~~-------------l~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~ 263 (848)
+++.|....+..+.+. ++.+.++++|+|||||||||.+++++|++. ++.++.++...
T Consensus 184 ~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~----------~a~~~~i~~pe 253 (693)
T KOG0730|consen 184 DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEY----------GAFLFLINGPE 253 (693)
T ss_pred cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHh----------CceeEecccHH
Confidence 4566666666554443 345788999999999999999999999988 67788999988
Q ss_pred ccccccccchHHHHHHHHHHHHHhCC-CeEEEEcccchhhhCCCCCc--hHHHHHHHhhhhc----CCceEEEEeeChHH
Q 003094 264 LVAGTKYRGEFEERLKKLMEEIKQSD-EIILFIDEVHTLIGAGAAEG--AIDAANILKPSLA----RGELQCIGATTLDE 336 (848)
Q Consensus 264 l~~~~~~~g~~~~~l~~l~~~~~~~~-~~IL~IDEid~l~~~~~~~~--~~~~~~~L~~~l~----~~~v~vI~atn~~~ 336 (848)
+. .++.|++++.+++.|+++.+.. |.|+||||+|.+++++.... ...+...|+.+++ .++++||++||+++
T Consensus 254 li--~k~~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~ 331 (693)
T KOG0730|consen 254 LI--SKFPGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPDAKVIVLAATNRPD 331 (693)
T ss_pred HH--HhcccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCcCcEEEEEecCCcc
Confidence 88 6788999999999999999988 99999999999998755433 3456666666665 57899999999998
Q ss_pred HHhhhhcChhhhc-ccC-CCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCChhhHHHHHHH
Q 003094 337 YRKHIEKDPALER-RFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDE 414 (848)
Q Consensus 337 ~~~~~~~d~al~~-Rf~-~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~p~~a~~ll~~ 414 (848)
.+|++++| ||+ .+++..|+..+|.+|++.+.+++ +.. ++..+..++..+.||.+. +...++.+
T Consensus 332 -----sld~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~----~~~-~~~~l~~iA~~thGyvGa-----DL~~l~~e 396 (693)
T KOG0730|consen 332 -----SLDPALRRGRFDREVEIGIPGSDGRLDILRVLTKKM----NLL-SDVDLEDIAVSTHGYVGA-----DLAALCRE 396 (693)
T ss_pred -----ccChhhhcCCCcceeeecCCCchhHHHHHHHHHHhc----CCc-chhhHHHHHHHccchhHH-----HHHHHHHH
Confidence 79999998 997 89999999999999999998854 333 567889999999999876 45555555
Q ss_pred HhhHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCCCCcc
Q 003094 415 AGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVV 494 (848)
Q Consensus 415 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v 494 (848)
|...+-.+ .. .+|..+. ..+
T Consensus 397 a~~~~~r~------~~--------------------~~~~~A~----------------------------------~~i 416 (693)
T KOG0730|consen 397 ASLQATRR------TL--------------------EIFQEAL----------------------------------MGI 416 (693)
T ss_pred HHHHHhhh------hH--------------------HHHHHHH----------------------------------hcC
Confidence 53222111 00 0000000 001
Q ss_pred CHHHHHHHHHHhhCCCCcccCcchHHHHHHHHHHhhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchH
Q 003094 495 TEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGK 574 (848)
Q Consensus 495 ~~~di~~~~~~~~g~p~~~~~~~~~~~l~~l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGK 574 (848)
.+..+..+ -++...++|++...++.++..+++.|.+.-...+ ...+.|+.+|+ .+||||||||||
T Consensus 417 ~psa~Re~-----~ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe------~F~r~Gi~ppk----GVLlyGPPGC~K 481 (693)
T KOG0730|consen 417 RPSALREI-----LVEMPNVSWDDIGGLEELKRELQQAVEWPLKHPE------KFARFGISPPK----GVLLYGPPGCGK 481 (693)
T ss_pred Cchhhhhe-----eccCCCCChhhccCHHHHHHHHHHHHhhhhhchH------HHHHhcCCCCc----eEEEECCCCcch
Confidence 11111111 0223344444444444444444444443322222 22345655554 499999999999
Q ss_pred HHHHHHHHHHhcCCCCceEEecccccccccchhcccCCCCCCcccccc--cchhHHHHcCCCeEEEEcCCCcCC------
Q 003094 575 SELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEG--GQLTEAVRRRPYTVVLFDEIEKAH------ 646 (848)
Q Consensus 575 T~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~~g~~~~--~~l~~~~~~~~~~Vl~lDEid~l~------ 646 (848)
|++||++|+.. +.+|+.+.+.++... |+|.+|. +.+|..++++.++||||||||.+.
T Consensus 482 T~lAkalAne~---~~nFlsvkgpEL~sk------------~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~ 546 (693)
T KOG0730|consen 482 TLLAKALANEA---GMNFLSVKGPELFSK------------YVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGS 546 (693)
T ss_pred HHHHHHHhhhh---cCCeeeccCHHHHHH------------hcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCC
Confidence 99999999987 899999999998654 8888776 678888999999999999999763
Q ss_pred -----hHHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHh
Q 003094 647 -----PDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQ 721 (848)
Q Consensus 647 -----~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 721 (848)
..+++.||+.|+..... ++++||++||....
T Consensus 547 ~~~v~~RVlsqLLtEmDG~e~~---------k~V~ViAATNRpd~----------------------------------- 582 (693)
T KOG0730|consen 547 SSGVTDRVLSQLLTEMDGLEAL---------KNVLVIAATNRPDM----------------------------------- 582 (693)
T ss_pred ccchHHHHHHHHHHHccccccc---------CcEEEEeccCChhh-----------------------------------
Confidence 35999999999875522 68999999996553
Q ss_pred hcChhhhh--ccCeEEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCeEeecHH-HHHHHHHccCCCCCCchHHHHHHHHH
Q 003094 722 YFRPEFLN--RLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTER-FRERVVEEGYNPSYGARPLRRAIMRL 798 (848)
Q Consensus 722 ~~~~~ll~--R~d~~i~f~~l~~~el~~I~~~~l~~~~~~~~~~~~~l~i~~~-a~~~l~~~~~~~~~g~r~L~~~i~~~ 798 (848)
+++++++ |||.+|++++++.+...+|++..+++ +.++++ -++.|+. ....|...+|...++..
T Consensus 583 -ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kk-----------mp~~~~vdl~~La~--~T~g~SGAel~~lCq~A 648 (693)
T KOG0730|consen 583 -IDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKK-----------MPFSEDVDLEELAQ--ATEGYSGAEIVAVCQEA 648 (693)
T ss_pred -cCHHHcCCcccceeEeecCccHHHHHHHHHHHHhc-----------CCCCccccHHHHHH--HhccCChHHHHHHHHHH
Confidence 6788886 99999999999999999999888765 234444 4567777 45556778999999988
Q ss_pred HHHHHHHHHH
Q 003094 799 LEDSMAEKML 808 (848)
Q Consensus 799 l~~~l~~~~l 808 (848)
..-++.+-+-
T Consensus 649 ~~~a~~e~i~ 658 (693)
T KOG0730|consen 649 ALLALRESIE 658 (693)
T ss_pred HHHHHHHhcc
Confidence 8877666543
No 11
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=3.6e-35 Score=353.32 Aligned_cols=457 Identities=23% Similarity=0.348 Sum_probs=314.8
Q ss_pred cCCCCCccCChHHHHHHHHHhc-------------cCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEE
Q 003094 193 EGKLDPVVGRQPQIERVVQILG-------------RRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITL 259 (848)
Q Consensus 193 ~~~ld~iiG~~~~~~~l~~~l~-------------~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~ 259 (848)
..+++++.|.+++++++.+.+. ...+.++||+||||||||++++++|+.+ +.+++.+
T Consensus 174 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~----------~~~~i~i 243 (733)
T TIGR01243 174 KVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA----------GAYFISI 243 (733)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh----------CCeEEEE
Confidence 3568899999999988877653 2566889999999999999999999988 5678888
Q ss_pred eCCcccccccccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCCc---hHHHHHHHhhhhc----CCceEEEEee
Q 003094 260 DMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEG---AIDAANILKPSLA----RGELQCIGAT 332 (848)
Q Consensus 260 ~~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~~---~~~~~~~L~~~l~----~~~v~vI~at 332 (848)
+...+. .++.|+.+..+..+|+.+....|+||||||+|.+.+.+.... ...+.+.|...++ ++.+++|++|
T Consensus 244 ~~~~i~--~~~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~at 321 (733)
T TIGR01243 244 NGPEIM--SKYYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGAT 321 (733)
T ss_pred ecHHHh--cccccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeec
Confidence 887776 557888999999999999988899999999999987644321 2345556665553 5679999999
Q ss_pred ChHHHHhhhhcChhhhc--ccC-CCcCCCCCHHHHHHHHHHHHHHHhhhhcCCC-ChHHHHHHHhhhhcccccCCChhhH
Q 003094 333 TLDEYRKHIEKDPALER--RFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRY-TDEALVSAAQLSYQYISDRFLPDKA 408 (848)
Q Consensus 333 n~~~~~~~~~~d~al~~--Rf~-~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~-s~~~l~~l~~~s~~~~~~~~~p~~a 408 (848)
|.++ .+|+++.+ ||+ .+.++.|+.++|.+||+..... ..+ .+..+..++..+.+|.+. ..
T Consensus 322 n~~~-----~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~------~~l~~d~~l~~la~~t~G~~ga-----dl 385 (733)
T TIGR01243 322 NRPD-----ALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRN------MPLAEDVDLDKLAEVTHGFVGA-----DL 385 (733)
T ss_pred CChh-----hcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcC------CCCccccCHHHHHHhCCCCCHH-----HH
Confidence 9987 68999988 897 8999999999999999965542 223 234578888888887654 33
Q ss_pred HHHHHHHhhHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccC
Q 003094 409 IDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAG 488 (848)
Q Consensus 409 ~~ll~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 488 (848)
..+...|...+-.+. .... ..++... ......
T Consensus 386 ~~l~~~a~~~al~r~-----------------~~~~-----~~~~~~~--------------------------~i~~~~ 417 (733)
T TIGR01243 386 AALAKEAAMAALRRF-----------------IREG-----KINFEAE--------------------------EIPAEV 417 (733)
T ss_pred HHHHHHHHHHHHHHH-----------------hhcc-----ccccccc--------------------------cccchh
Confidence 334443332211100 0000 0000000 000000
Q ss_pred CCCCccCHHHHHHHHHHhhCCCCcccCcchHHHHHHHHHHhhccccChHHHHHHHHHHHHHHH--------ccCCCCCCC
Q 003094 489 DVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRAR--------VGLKNPNRP 560 (848)
Q Consensus 489 ~~~~~v~~~di~~~~~~~~g~p~~~~~~~~~~~l~~l~~~l~~~vigq~~~~~~l~~~~~~~~--------~~~~~~~~p 560 (848)
.....++.+|+...+...... . ....+......-++++.|++.+++.|.+.+.... .++. +
T Consensus 418 ~~~~~v~~~df~~Al~~v~ps--~-----~~~~~~~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~----~ 486 (733)
T TIGR01243 418 LKELKVTMKDFMEALKMVEPS--A-----IREVLVEVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIR----P 486 (733)
T ss_pred cccccccHHHHHHHHhhcccc--c-----cchhhccccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCC----C
Confidence 112345566665554432211 0 0011112233456789999999999888776421 1322 2
Q ss_pred ceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhcccCCCCCCcccccc--cchhHHHHcCCCeEEE
Q 003094 561 IASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEG--GQLTEAVRRRPYTVVL 638 (848)
Q Consensus 561 ~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~~g~~~~--~~l~~~~~~~~~~Vl~ 638 (848)
..++||+||||||||++|+++|..+ +.+|+.++++++... |+|+++. +.++..++...++|||
T Consensus 487 ~~giLL~GppGtGKT~lakalA~e~---~~~fi~v~~~~l~~~------------~vGese~~i~~~f~~A~~~~p~iif 551 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLAKAVATES---GANFIAVRGPEILSK------------WVGESEKAIREIFRKARQAAPAIIF 551 (733)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhc---CCCEEEEehHHHhhc------------ccCcHHHHHHHHHHHHHhcCCEEEE
Confidence 3459999999999999999999987 788999988876432 7776654 5677778888899999
Q ss_pred EcCCCcCCh------------HHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCchhhhccCcccccccCCCcccc
Q 003094 639 FDEIEKAHP------------DVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDS 706 (848)
Q Consensus 639 lDEid~l~~------------~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~ 706 (848)
|||||.+.+ .+++.|+..|+.-. ...+++||+|||...
T Consensus 552 iDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~---------~~~~v~vI~aTn~~~--------------------- 601 (733)
T TIGR01243 552 FDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQ---------ELSNVVVIAATNRPD--------------------- 601 (733)
T ss_pred EEChhhhhccCCCCCCccHHHHHHHHHHHHhhccc---------CCCCEEEEEeCCChh---------------------
Confidence 999998732 46788888887521 125789999998443
Q ss_pred cHHHHHHHHHHHHHhhcChhhh--hccCeEEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCeEeecHHHHHHHHHccCCC
Q 003094 707 SYNRIKSLVTEELKQYFRPEFL--NRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNP 784 (848)
Q Consensus 707 ~~~~~~~~~~~~l~~~~~~~ll--~R~d~~i~f~~l~~~el~~I~~~~l~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~ 784 (848)
.++|+++ +|||.++.|++++.++..+|+...+... ...-.+ -++.|+. ...
T Consensus 602 ---------------~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~-------~~~~~~---~l~~la~--~t~ 654 (733)
T TIGR01243 602 ---------------ILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSM-------PLAEDV---DLEELAE--MTE 654 (733)
T ss_pred ---------------hCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCC-------CCCccC---CHHHHHH--HcC
Confidence 2668888 4999999999999999999987554321 111112 2455665 344
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHH
Q 003094 785 SYGARPLRRAIMRLLEDSMAEKML 808 (848)
Q Consensus 785 ~~g~r~L~~~i~~~l~~~l~~~~l 808 (848)
.+...++...++.....++-+.+-
T Consensus 655 g~sgadi~~~~~~A~~~a~~~~~~ 678 (733)
T TIGR01243 655 GYTGADIEAVCREAAMAALRESIG 678 (733)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhh
Confidence 567788998888888877776543
No 12
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-33 Score=313.59 Aligned_cols=450 Identities=21% Similarity=0.331 Sum_probs=306.4
Q ss_pred ccCChHHHHHHHHHhccCC---------CCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCccccccc
Q 003094 199 VVGRQPQIERVVQILGRRT---------KNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTK 269 (848)
Q Consensus 199 iiG~~~~~~~l~~~l~~~~---------~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~~ 269 (848)
..+++..+..+..++..+. ...+||+|+||||||+++++.|+++ |.+++++||.++.+.+
T Consensus 403 ~~~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~l----------g~h~~evdc~el~~~s- 471 (953)
T KOG0736|consen 403 PPGLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASEL----------GLHLLEVDCYELVAES- 471 (953)
T ss_pred CccchHHHHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHh----------CCceEeccHHHHhhcc-
Confidence 4456666667777765432 2347899999999999999999999 7899999999998543
Q ss_pred ccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhc-------CCceEEEEeeChHHHHhhhh
Q 003094 270 YRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLA-------RGELQCIGATTLDEYRKHIE 342 (848)
Q Consensus 270 ~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~-------~~~v~vI~atn~~~~~~~~~ 342 (848)
....+..+...|..++.+.|+|||+-++|.+.-+.++.........+...+. ...+++|++|+..+ .
T Consensus 472 -~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~-----~ 545 (953)
T KOG0736|consen 472 -ASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIE-----D 545 (953)
T ss_pred -cchhHHHHHHHHHHHhhcCceEEEEeccceeeecCCCchhHHHHHHHHHHHhcccccCCCCceEEEEeccccc-----c
Confidence 4677888999999999999999999999999755444444555555555443 46689999999887 6
Q ss_pred cChhhhcccC-CCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCChhhHHHHHHHHhhHHHH
Q 003094 343 KDPALERRFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRL 421 (848)
Q Consensus 343 ~d~al~~Rf~-~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~p~~a~~ll~~a~~~~~~ 421 (848)
+++.+++-|. .|.++.|+.+||.+||+.+..... +. .+..+..++..+.++... ....+.......+
T Consensus 546 lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~----~n-~~v~~k~~a~~t~gfs~~-----~L~~l~~~~s~~~-- 613 (953)
T KOG0736|consen 546 LPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLP----LN-QDVNLKQLARKTSGFSFG-----DLEALVAHSSLAA-- 613 (953)
T ss_pred CCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhccc----cc-hHHHHHHHHHhcCCCCHH-----HHHHHhcCchHHH--
Confidence 8999999885 999999999999999999887422 11 233455666666665433 2222222110000
Q ss_pred hhcCCchHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCCCCccCHHHHHH
Q 003094 422 RHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQH 501 (848)
Q Consensus 422 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~di~~ 501 (848)
......+. + ++-+.. .....-......++++|+..
T Consensus 614 ----------------~~~i~~~~-l--------~g~~~~--------------------~~~~~~~~~~~~l~~edf~k 648 (953)
T KOG0736|consen 614 ----------------KTRIKNKG-L--------AGGLQE--------------------EDEGELCAAGFLLTEEDFDK 648 (953)
T ss_pred ----------------HHHHHhhc-c--------cccchh--------------------ccccccccccceecHHHHHH
Confidence 00000000 0 000000 00000001135677777776
Q ss_pred HHHHh-------hCCCCcccCcchHHHHHHHHHHhhccccChHHHHHHHHHHHHHHHccCCCC------CCCceEEEeec
Q 003094 502 IVSAW-------TGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNP------NRPIASFIFSG 568 (848)
Q Consensus 502 ~~~~~-------~g~p~~~~~~~~~~~l~~l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~~------~~p~~~lLl~G 568 (848)
.++.. .|.| ++.+.-|++|.|.++++..|...+... ++.| -+++..+||||
T Consensus 649 als~~~~~fs~aiGAP-------------KIPnV~WdDVGGLeevK~eIldTIqlP---L~hpeLfssglrkRSGILLYG 712 (953)
T KOG0736|consen 649 ALSRLQKEFSDAIGAP-------------KIPNVSWDDVGGLEEVKTEILDTIQLP---LKHPELFSSGLRKRSGILLYG 712 (953)
T ss_pred HHHHHHHhhhhhcCCC-------------CCCccchhcccCHHHHHHHHHHHhcCc---ccChhhhhccccccceeEEEC
Confidence 65532 2222 123345667888888888888887642 1111 23446799999
Q ss_pred CCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhcccCCCCCCcccccc--cchhHHHHcCCCeEEEEcCCCcCC
Q 003094 569 PTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEG--GQLTEAVRRRPYTVVLFDEIEKAH 646 (848)
Q Consensus 569 p~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~~g~~~~--~~l~~~~~~~~~~Vl~lDEid~l~ 646 (848)
|||||||.+|+++|..+ ..+|.++...++.+. |+|++|. +.+|+.+|.+.+|||||||+|++.
T Consensus 713 PPGTGKTLlAKAVATEc---sL~FlSVKGPELLNM------------YVGqSE~NVR~VFerAR~A~PCVIFFDELDSlA 777 (953)
T KOG0736|consen 713 PPGTGKTLLAKAVATEC---SLNFLSVKGPELLNM------------YVGQSEENVREVFERARSAAPCVIFFDELDSLA 777 (953)
T ss_pred CCCCchHHHHHHHHhhc---eeeEEeecCHHHHHH------------HhcchHHHHHHHHHHhhccCCeEEEeccccccC
Confidence 99999999999999987 789999999988765 9998887 678999999999999999999997
Q ss_pred h-------------HHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHH
Q 003094 647 P-------------DVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKS 713 (848)
Q Consensus 647 ~-------------~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~ 713 (848)
| .+..+||..||.-. +. +...+.+|.+||.+.
T Consensus 778 P~RG~sGDSGGVMDRVVSQLLAELDgls--~~-----~s~~VFViGATNRPD---------------------------- 822 (953)
T KOG0736|consen 778 PNRGRSGDSGGVMDRVVSQLLAELDGLS--DS-----SSQDVFVIGATNRPD---------------------------- 822 (953)
T ss_pred ccCCCCCCccccHHHHHHHHHHHhhccc--CC-----CCCceEEEecCCCcc----------------------------
Confidence 7 38889999987622 11 235678888998554
Q ss_pred HHHHHHHhhcChhhh--hccCeEEEcCCCCHH-HHHHHHHHHHHHHHHHHhcCCCeEeecHHH-HHHHHHccCCCCCCch
Q 003094 714 LVTEELKQYFRPEFL--NRLDEMIVFRQLTKL-EVKEIADIMLKEVFDRLKTKDIELQVTERF-RERVVEEGYNPSYGAR 789 (848)
Q Consensus 714 ~~~~~l~~~~~~~ll--~R~d~~i~f~~l~~~-el~~I~~~~l~~~~~~~~~~~~~l~i~~~a-~~~l~~~~~~~~~g~r 789 (848)
.++|+|+ +|||..++..+-..+ ....+++..-++ + .+++++ +..+++. .++++.+-
T Consensus 823 --------LLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrk----F-------kLdedVdL~eiAk~-cp~~~TGA 882 (953)
T KOG0736|consen 823 --------LLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRK----F-------KLDEDVDLVEIAKK-CPPNMTGA 882 (953)
T ss_pred --------ccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHH----c-------cCCCCcCHHHHHhh-CCcCCchh
Confidence 2567887 799999999887554 444455443333 2 233333 2345554 55666666
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 003094 790 PLRRAIMRLLEDSMAEKML 808 (848)
Q Consensus 790 ~L~~~i~~~l~~~l~~~~l 808 (848)
++-..+.+++..++.+-+-
T Consensus 883 DlYsLCSdA~l~AikR~i~ 901 (953)
T KOG0736|consen 883 DLYSLCSDAMLAAIKRTIH 901 (953)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8888888888888877644
No 13
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=6.9e-30 Score=281.11 Aligned_cols=432 Identities=19% Similarity=0.243 Sum_probs=290.0
Q ss_pred cCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccccccccchHHHHHHHHHHHHHhCCCeEEE
Q 003094 215 RRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILF 294 (848)
Q Consensus 215 ~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~IL~ 294 (848)
.....|+||.||+|+|||.|+++++++.... ..+.+..++|+.+... ....+.+.+..+|.++...+|.|++
T Consensus 428 v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~------~~~hv~~v~Cs~l~~~--~~e~iQk~l~~vfse~~~~~PSiIv 499 (952)
T KOG0735|consen 428 VFRHGNILLNGPKGSGKTNLVKALFDYYSKD------LIAHVEIVSCSTLDGS--SLEKIQKFLNNVFSEALWYAPSIIV 499 (952)
T ss_pred ccccccEEEeCCCCCCHhHHHHHHHHHhccc------cceEEEEEechhccch--hHHHHHHHHHHHHHHHHhhCCcEEE
Confidence 3456789999999999999999999998632 2467888999888632 2556667777888888889999999
Q ss_pred EcccchhhhCCCCC-chH-----HHHHHH----hhhhcC-CceEEEEeeChHHHHhhhhcChhhhc--ccC-CCcCCCCC
Q 003094 295 IDEVHTLIGAGAAE-GAI-----DAANIL----KPSLAR-GELQCIGATTLDEYRKHIEKDPALER--RFQ-PVKVPEPS 360 (848)
Q Consensus 295 IDEid~l~~~~~~~-~~~-----~~~~~L----~~~l~~-~~v~vI~atn~~~~~~~~~~d~al~~--Rf~-~i~~~~p~ 360 (848)
+|++|.|+.....+ +.. .....| ..++.+ ..+.+|++.+... .++|-|.+ +|+ .+.++.|.
T Consensus 500 LDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~q-----tl~~~L~s~~~Fq~~~~L~ap~ 574 (952)
T KOG0735|consen 500 LDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQ-----TLNPLLVSPLLFQIVIALPAPA 574 (952)
T ss_pred EcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhh-----hcChhhcCccceEEEEecCCcc
Confidence 99999999733222 211 122222 233333 4468888887766 57777776 777 88999999
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCChhhHHHHHHHHhhHHHHhhcCCchHHHHHHHHHHHH
Q 003094 361 VDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQI 440 (848)
Q Consensus 361 ~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~p~~a~~ll~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 440 (848)
..+|.+||..+..+- ....+..+++.++..+.||..- +..-+.+.|...+.+...
T Consensus 575 ~~~R~~IL~~~~s~~----~~~~~~~dLd~ls~~TEGy~~~-----DL~ifVeRai~~a~leri---------------- 629 (952)
T KOG0735|consen 575 VTRRKEILTTIFSKN----LSDITMDDLDFLSVKTEGYLAT-----DLVIFVERAIHEAFLERI---------------- 629 (952)
T ss_pred hhHHHHHHHHHHHhh----hhhhhhHHHHHHHHhcCCccch-----hHHHHHHHHHHHHHHHHh----------------
Confidence 999999999988742 2344566777788888888644 444445555432221100
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCCCCccCHHHHHHHHHHhhCCCCcccCcchHH
Q 003094 441 TKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESD 520 (848)
Q Consensus 441 ~~~~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~di~~~~~~~~g~p~~~~~~~~~~ 520 (848)
+. ....++.+++...+..........+......
T Consensus 630 ----------------------------------------------s~-~~klltke~f~ksL~~F~P~aLR~ik~~k~t 662 (952)
T KOG0735|consen 630 ----------------------------------------------SN-GPKLLTKELFEKSLKDFVPLALRGIKLVKST 662 (952)
T ss_pred ----------------------------------------------cc-CcccchHHHHHHHHHhcChHHhhhccccccC
Confidence 00 0114555555555444332211111100000
Q ss_pred HHHHHHHHhhccccChHHHHHHHHHHHHHHHc----cCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEec
Q 003094 521 RLLKMEETLHKRVIGQDEAVKAISRAIRRARV----GLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLD 596 (848)
Q Consensus 521 ~l~~l~~~l~~~vigq~~~~~~l~~~~~~~~~----~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~ 596 (848)
..-++++.|..++++.+.+.+..... .-..|-+-...+|||||||||||.+|-++|..+ +..|+.+.
T Consensus 663 ------gi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~---~~~fisvK 733 (952)
T KOG0735|consen 663 ------GIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNS---NLRFISVK 733 (952)
T ss_pred ------CCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhC---CeeEEEec
Confidence 02355677777777777777754321 111222333469999999999999999999876 88999999
Q ss_pred ccccccccchhcccCCCCCCcccccc--cchhHHHHcCCCeEEEEcCCCcCCh-----------HHHHHHHhhhcCcEEE
Q 003094 597 MSEFMERHTVSKLIGSPPGYVGYTEG--GQLTEAVRRRPYTVVLFDEIEKAHP-----------DVFNMMLQILEDGRLT 663 (848)
Q Consensus 597 ~~~~~~~~~~~~l~g~~~g~~g~~~~--~~l~~~~~~~~~~Vl~lDEid~l~~-----------~~~~~Ll~~le~g~~~ 663 (848)
..++.++ |.|.+|. +.+|+.++.+.+||+||||+|++.| .+.|.||+.|+.-+-
T Consensus 734 GPElL~K------------yIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Eg- 800 (952)
T KOG0735|consen 734 GPELLSK------------YIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEG- 800 (952)
T ss_pred CHHHHHH------------HhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccc-
Confidence 9888654 6666655 6788999999999999999999866 499999999987441
Q ss_pred cCCCceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhh--hccCeEEEcCCCC
Q 003094 664 DSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFL--NRLDEMIVFRQLT 741 (848)
Q Consensus 664 ~~~g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll--~R~d~~i~f~~l~ 741 (848)
...+.++++|.. .+ .++|+|+ +|+|..+.-+.++
T Consensus 801 --------l~GV~i~aaTsR-pd-----------------------------------liDpALLRpGRlD~~v~C~~P~ 836 (952)
T KOG0735|consen 801 --------LDGVYILAATSR-PD-----------------------------------LIDPALLRPGRLDKLVYCPLPD 836 (952)
T ss_pred --------cceEEEEEecCC-cc-----------------------------------ccCHhhcCCCccceeeeCCCCC
Confidence 123344444432 22 2567887 7999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEeec-HHHHHHHHHccCCCCCCchHHHHHHHHHHHHHHHHHHHcc
Q 003094 742 KLEVKEIADIMLKEVFDRLKTKDIELQVT-ERFRERVVEEGYNPSYGARPLRRAIMRLLEDSMAEKMLAR 810 (848)
Q Consensus 742 ~~el~~I~~~~l~~~~~~~~~~~~~l~i~-~~a~~~l~~~~~~~~~g~r~L~~~i~~~l~~~l~~~~l~~ 810 (848)
+.+..+|+...-..+ ..+ +--+++++. ....|..-+|+..+..+-..++-+++.+.
T Consensus 837 ~~eRl~il~~ls~s~-----------~~~~~vdl~~~a~--~T~g~tgADlq~ll~~A~l~avh~~l~~~ 893 (952)
T KOG0735|consen 837 EPERLEILQVLSNSL-----------LKDTDVDLECLAQ--KTDGFTGADLQSLLYNAQLAAVHEILKRE 893 (952)
T ss_pred cHHHHHHHHHHhhcc-----------CCccccchHHHhh--hcCCCchhhHHHHHHHHHHHHHHHHHHhc
Confidence 999999986555431 122 223455665 33444556788888887777777776554
No 14
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.98 E-value=9.7e-31 Score=287.29 Aligned_cols=270 Identities=27% Similarity=0.407 Sum_probs=213.0
Q ss_pred HHHHHHHhhccccChHHHHHHHHHHHHHHHccCCC----CC-----CCceEEEeecCCcchHHHHHHHHHHHhcCCCCce
Q 003094 522 LLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKN----PN-----RPIASFIFSGPTGVGKSELAKALAAYYFGSEEAM 592 (848)
Q Consensus 522 l~~l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~----~~-----~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~ 592 (848)
...+++.|.+.|+||+++++.+..++..++.++.. +. .+..++||+||||||||++|++||+.+ +.+|
T Consensus 68 p~~i~~~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l---~~pf 144 (413)
T TIGR00382 68 PKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARIL---NVPF 144 (413)
T ss_pred HHHHHHHhcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhc---CCCe
Confidence 45678899999999999999999988666555432 11 124689999999999999999999887 6788
Q ss_pred EEecccccccccchhcccCCCCCCcccccccchhHHHH-------cCCCeEEEEcCCCcCCh--------------HHHH
Q 003094 593 IRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVR-------RRPYTVVLFDEIEKAHP--------------DVFN 651 (848)
Q Consensus 593 i~i~~~~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~-------~~~~~Vl~lDEid~l~~--------------~~~~ 651 (848)
..+++..+. +++|+|++....+...++ .+.++||||||||++++ .+|+
T Consensus 145 ~~~da~~L~-----------~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~ 213 (413)
T TIGR00382 145 AIADATTLT-----------EAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQ 213 (413)
T ss_pred EEechhhcc-----------ccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHH
Confidence 888876652 346888866565655544 34568999999999987 6999
Q ss_pred HHHhhhcCcEEEc---CCCceeecCCeEEEEecCC---------Cchhhhc---cCcccccccCCCcccc-cHHHHHHHH
Q 003094 652 MMLQILEDGRLTD---SKGRTVDFKNTLLIMTSNV---------GSSVIEK---GGRRIGFDLDYDEKDS-SYNRIKSLV 715 (848)
Q Consensus 652 ~Ll~~le~g~~~~---~~g~~v~~~~~iiI~tsN~---------~~~~i~~---~~~~~~f~~~~~~~~~-~~~~~~~~~ 715 (848)
.||++|| |.+++ .+|+.+++.++++|+|+|. +...+.. ....+||..+...... ....++...
T Consensus 214 ~LL~iLe-G~~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~ 292 (413)
T TIGR00382 214 ALLKIIE-GTVANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVE 292 (413)
T ss_pred HHHHHhh-ccceecccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHH
Confidence 9999995 77765 6789999999999999998 4333222 1235777532211111 123445566
Q ss_pred HHHHHhh-cChhhhhccCeEEEcCCCCHHHHHHHHHHH----HHHHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchH
Q 003094 716 TEELKQY-FRPEFLNRLDEMIVFRQLTKLEVKEIADIM----LKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARP 790 (848)
Q Consensus 716 ~~~l~~~-~~~~ll~R~d~~i~f~~l~~~el~~I~~~~----l~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~ 790 (848)
.+++.++ |.|+|++|+|.+++|.||+.+++.+|+... ++++.+.+...++.+.++++++++|++.+|++.+|||+
T Consensus 293 ~~dl~~~g~~PEflgRld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~ 372 (413)
T TIGR00382 293 PEDLVKFGLIPEFIGRLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARG 372 (413)
T ss_pred HHHHHHHhhHHHHhCCCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchH
Confidence 7777776 999999999999999999999999999875 55555666667999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 003094 791 LRRAIMRLLEDSMAEK 806 (848)
Q Consensus 791 L~~~i~~~l~~~l~~~ 806 (848)
|++.|++.+.+.+++.
T Consensus 373 Lr~iie~~l~~~m~e~ 388 (413)
T TIGR00382 373 LRSIVEGLLLDVMFDL 388 (413)
T ss_pred HHHHHHHhhHHHHhhC
Confidence 9999999999999987
No 15
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1e-30 Score=278.93 Aligned_cols=398 Identities=25% Similarity=0.377 Sum_probs=266.7
Q ss_pred HHHHhccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccccccccchHHHHHHHHHHHHHh-
Q 003094 209 VVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQ- 287 (848)
Q Consensus 209 l~~~l~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~~~~g~~~~~l~~l~~~~~~- 287 (848)
+++.|+.++.+++|||||||||||.+||.|.+.++.. .|..+.|.+++ .+|+|+.|++++.+|..+.+
T Consensus 247 vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNAr-ePKIVNGPeIL----------~KYVGeSE~NvR~LFaDAEeE 315 (744)
T KOG0741|consen 247 VIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAR-EPKIVNGPEIL----------NKYVGESEENVRKLFADAEEE 315 (744)
T ss_pred HHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCC-CCcccCcHHHH----------HHhhcccHHHHHHHHHhHHHH
Confidence 5566778889999999999999999999999988753 35555555443 68999999999999999863
Q ss_pred -------CCCeEEEEcccchhhhCCCCCc-----hHHHHHHHhhhhc----CCceEEEEeeChHHHHhhhhcChhhhc--
Q 003094 288 -------SDEIILFIDEVHTLIGAGAAEG-----AIDAANILKPSLA----RGELQCIGATTLDEYRKHIEKDPALER-- 349 (848)
Q Consensus 288 -------~~~~IL~IDEid~l~~~~~~~~-----~~~~~~~L~~~l~----~~~v~vI~atn~~~~~~~~~~d~al~~-- 349 (848)
++-.|+++||+|.+|+.+.+.+ ...++|.|+.-++ -.++.|||.||+.++ +|.+|+|
T Consensus 316 ~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR~Dl-----IDEALLRPG 390 (744)
T KOG0741|consen 316 QRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNRKDL-----IDEALLRPG 390 (744)
T ss_pred HHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCchhh-----HHHHhcCCC
Confidence 3346999999999997644322 4567888887765 356999999999994 8999999
Q ss_pred ccC-CCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCChhhHHHHHHHHhhHHHHhhcCCch
Q 003094 350 RFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPE 428 (848)
Q Consensus 350 Rf~-~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~p~~a~~ll~~a~~~~~~~~~~~~~ 428 (848)
||. .+++..|++.-|.+|++.+.+++..+..+. ++-.+..++.++..|.+. ....+++.|.+.+--++.....
T Consensus 391 RlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~-~dVdl~elA~lTKNfSGA-----EleglVksA~S~A~nR~vk~~~ 464 (744)
T KOG0741|consen 391 RLEVQMEISLPDEKGRLQILKIHTKRMRENNKLS-ADVDLKELAALTKNFSGA-----ELEGLVKSAQSFAMNRHVKAGG 464 (744)
T ss_pred ceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCC-CCcCHHHHHHHhcCCchh-----HHHHHHHHHHHHHHHhhhccCc
Confidence 997 899999999999999999998875544332 445688899999888766 5667777776555433221100
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCCCCccCHHHHHHHHHHhhC
Q 003094 429 EARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTG 508 (848)
Q Consensus 429 ~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~di~~~~~~~~g 508 (848)
.. ..+ ........|+.+|+.+.+...
T Consensus 465 ~~-------------------~~~---------------------------------~~~~e~lkV~r~DFl~aL~dV-- 490 (744)
T KOG0741|consen 465 KV-------------------EVD---------------------------------PVAIENLKVTRGDFLNALEDV-- 490 (744)
T ss_pred ce-------------------ecC---------------------------------chhhhheeecHHHHHHHHHhc--
Confidence 00 000 001124457777777766522
Q ss_pred CCCcccCcchHHHHHHHHHHhhccccChHHHHHHHHHHHHHHHccCCCC-CCCceEEEeecCCcchHHHHHHHHHHHhcC
Q 003094 509 IPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNP-NRPIASFIFSGPTGVGKSELAKALAAYYFG 587 (848)
Q Consensus 509 ~p~~~~~~~~~~~l~~l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~~-~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~ 587 (848)
.|..-...++ ++..+...++--.+-+..+...-.......+.+ +.|+.++||.||||+|||+||..+|...
T Consensus 491 kPAFG~see~------l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~~S-- 562 (744)
T KOG0741|consen 491 KPAFGISEED------LERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAAKIALSS-- 562 (744)
T ss_pred CcccCCCHHH------HHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHHHHHHhhc--
Confidence 2333333333 333444444444444444444333332333444 3477899999999999999999999865
Q ss_pred CCCceEEecccccccccchhcccCCCCCCcccccc------cchhHHHHcCCCeEEEEcCCCcC------ChHHHHHHHh
Q 003094 588 SEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEG------GQLTEAVRRRPYTVVLFDEIEKA------HPDVFNMMLQ 655 (848)
Q Consensus 588 ~~~~~i~i~~~~~~~~~~~~~l~g~~~g~~g~~~~------~~l~~~~~~~~~~Vl~lDEid~l------~~~~~~~Ll~ 655 (848)
+.||+.+=-.+ . .+|.+|. ...++.+.+++-+||++|+|+.+ .|.+-|.++|
T Consensus 563 -~FPFvKiiSpe--------~-------miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQ 626 (744)
T KOG0741|consen 563 -DFPFVKIISPE--------D-------MIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQ 626 (744)
T ss_pred -CCCeEEEeChH--------H-------ccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhcccccCchhhHHHHH
Confidence 88998763222 1 3344333 44677788899999999999976 4555555555
Q ss_pred h----hcCcEEEcCCCceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhcc
Q 003094 656 I----LEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRL 731 (848)
Q Consensus 656 ~----le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~ 731 (848)
. +.. .++.|+ -++|++|.....++. .-++++-|
T Consensus 627 aL~VllK~---~ppkg~------kLli~~TTS~~~vL~----------------------------------~m~i~~~F 663 (744)
T KOG0741|consen 627 ALLVLLKK---QPPKGR------KLLIFGTTSRREVLQ----------------------------------EMGILDCF 663 (744)
T ss_pred HHHHHhcc---CCCCCc------eEEEEecccHHHHHH----------------------------------HcCHHHhh
Confidence 4 433 122332 355555542222111 12466777
Q ss_pred CeEEEcCCCCH-HHHHHHH
Q 003094 732 DEMIVFRQLTK-LEVKEIA 749 (848)
Q Consensus 732 d~~i~f~~l~~-~el~~I~ 749 (848)
+..+..+.++. +++.+++
T Consensus 664 ~~~i~Vpnl~~~~~~~~vl 682 (744)
T KOG0741|consen 664 SSTIHVPNLTTGEQLLEVL 682 (744)
T ss_pred hheeecCccCchHHHHHHH
Confidence 78888898877 7777766
No 16
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.97 E-value=6.4e-30 Score=283.00 Aligned_cols=272 Identities=27% Similarity=0.395 Sum_probs=209.6
Q ss_pred HHHHHHHhhccccChHHHHHHHHHHHHHHHccCCC-------CCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEE
Q 003094 522 LLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKN-------PNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIR 594 (848)
Q Consensus 522 l~~l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~-------~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~ 594 (848)
..++...|.+.|+||+++++.+..++..+...+.. ...+..++||+||||||||++|+++|+.+ +.+|+.
T Consensus 62 p~~i~~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l---~~pf~~ 138 (412)
T PRK05342 62 PKEIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL---DVPFAI 138 (412)
T ss_pred HHHHHHHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh---CCCcee
Confidence 45677788889999999999998887544333322 12345689999999999999999999988 789999
Q ss_pred ecccccccccchhcccCCCCCCcccccccchhHH-------HHcCCCeEEEEcCCCcCCh--------------HHHHHH
Q 003094 595 LDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEA-------VRRRPYTVVLFDEIEKAHP--------------DVFNMM 653 (848)
Q Consensus 595 i~~~~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~-------~~~~~~~Vl~lDEid~l~~--------------~~~~~L 653 (848)
+|++.+.. ++|+|.+....+... +.++.++||||||||++++ .+|+.|
T Consensus 139 id~~~l~~-----------~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~L 207 (412)
T PRK05342 139 ADATTLTE-----------AGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQAL 207 (412)
T ss_pred cchhhccc-----------CCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHH
Confidence 99987643 357877554444333 3356789999999999975 399999
Q ss_pred HhhhcCcEE--EcCCCceeecCCeEEEEecCC---------Cchh-hhc--cCcccccccCCCcccc---cHHHHHHHHH
Q 003094 654 LQILEDGRL--TDSKGRTVDFKNTLLIMTSNV---------GSSV-IEK--GGRRIGFDLDYDEKDS---SYNRIKSLVT 716 (848)
Q Consensus 654 l~~le~g~~--~~~~g~~v~~~~~iiI~tsN~---------~~~~-i~~--~~~~~~f~~~~~~~~~---~~~~~~~~~~ 716 (848)
|++||+..+ ++.+|+..++.++++|.|+|. +... +.. ....+||..+...... ....++.+..
T Consensus 208 L~~Leg~~~~v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~ 287 (412)
T PRK05342 208 LKILEGTVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEP 287 (412)
T ss_pred HHHHhcCeEEeCCCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCH
Confidence 999986543 556788888888888888886 2221 222 1246777543221111 1333444455
Q ss_pred HHHHhh-cChhhhhccCeEEEcCCCCHHHHHHHHH----HHHHHHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHH
Q 003094 717 EELKQY-FRPEFLNRLDEMIVFRQLTKLEVKEIAD----IMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPL 791 (848)
Q Consensus 717 ~~l~~~-~~~~ll~R~d~~i~f~~l~~~el~~I~~----~~l~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L 791 (848)
+++..+ |.|+|++|+|.+++|.||+.+++.+|+. ..++++.+.+...++.+.++++++++|++.+|+..+|+|+|
T Consensus 288 ~dL~~~gf~PEflgRld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~L 367 (412)
T PRK05342 288 EDLIKFGLIPEFIGRLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGL 367 (412)
T ss_pred HHHHHHhhhHHHhCCCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchH
Confidence 677777 8999999999999999999999999997 56667777778889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 003094 792 RRAIMRLLEDSMAEKM 807 (848)
Q Consensus 792 ~~~i~~~l~~~l~~~~ 807 (848)
++.|++.+.+++++..
T Consensus 368 rriie~~l~~~~~~~p 383 (412)
T PRK05342 368 RSILEEILLDVMFELP 383 (412)
T ss_pred HHHHHHHhHHHHHhcc
Confidence 9999999999998773
No 17
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=3.1e-24 Score=248.53 Aligned_cols=426 Identities=25% Similarity=0.303 Sum_probs=282.1
Q ss_pred HHHHHhccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccccccccchHHHHHHHHHHHHHh
Q 003094 208 RVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQ 287 (848)
Q Consensus 208 ~l~~~l~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~~~~g~~~~~l~~l~~~~~~ 287 (848)
.+.+.+...++.+++++||||+|||++++.++.. .. .. ..++..... .++.|+.+.++..++..+..
T Consensus 8 ~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~---------~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~a~~ 74 (494)
T COG0464 8 ELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GA---------EF-LSINGPEIL--SKYVGESELRLRELFEEAEK 74 (494)
T ss_pred HHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cC---------cc-cccCcchhh--hhhhhHHHHHHHHHHHHHHH
Confidence 4456677889999999999999999999999997 11 11 233333333 67889999999999999999
Q ss_pred CCCeEEEEcccchhhhCCCCCc---hHHHHHHHhhhhc---CCceEEEEeeChHHHHhhhhcChhhhc--ccC-CCcCCC
Q 003094 288 SDEIILFIDEVHTLIGAGAAEG---AIDAANILKPSLA---RGELQCIGATTLDEYRKHIEKDPALER--RFQ-PVKVPE 358 (848)
Q Consensus 288 ~~~~IL~IDEid~l~~~~~~~~---~~~~~~~L~~~l~---~~~v~vI~atn~~~~~~~~~~d~al~~--Rf~-~i~~~~ 358 (848)
..+.++++||+|.+.+...... .......+...+. ++.+.+++.++... .+++++.+ ||. .+.+..
T Consensus 75 ~~~~ii~~d~~~~~~~~~~~~~~~~~~~v~~~l~~~~d~~~~~~v~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~ 149 (494)
T COG0464 75 LAPSIIFIDEIDALAPKRSSDQGEVERRVVAQLLALMDGLKRGQVIVIGATNRPD-----GLDPAKRRPGRFDREIEVNL 149 (494)
T ss_pred hCCCeEeechhhhcccCccccccchhhHHHHHHHHhcccccCCceEEEeecCCcc-----ccChhHhCccccceeeecCC
Confidence 8889999999999987755511 2233444444333 33478888888877 57888877 886 899999
Q ss_pred CCHHHHHHHHHHHHHHHhhhhcCCCC-hHHHHHHHhhhhcccccCCChhhHHHHHHHHhhHHHHhhcCCchHHHHHHHHH
Q 003094 359 PSVDETIQILKGLRERYEIHHKLRYT-DEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKEL 437 (848)
Q Consensus 359 p~~~e~~~Il~~~~~~~~~~~~~~~s-~~~l~~l~~~s~~~~~~~~~p~~a~~ll~~a~~~~~~~~~~~~~~~~~~~~~l 437 (848)
|+...+.+|+....... ... +..+..++..+.++... +...+..++......+..
T Consensus 150 ~~~~~~~ei~~~~~~~~------~~~~~~~~~~~a~~~~~~~~~-----~~~~l~~~~~~~~~~r~~------------- 205 (494)
T COG0464 150 PDEAGRLEILQIHTRLM------FLGPPGTGKTLAARTVGKSGA-----DLGALAKEAALRELRRAI------------- 205 (494)
T ss_pred CCHHHHHHHHHHHHhcC------CCcccccHHHHHHhcCCccHH-----HHHHHHHHHHHHHHHhhh-------------
Confidence 99998888888665422 222 44566677766666544 222222222211111100
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCCCCccCHHHHHHHHHHhhCC-----CCc
Q 003094 438 RQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGI-----PVE 512 (848)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~di~~~~~~~~g~-----p~~ 512 (848)
........++.+++...+....+. ...
T Consensus 206 ------------------------------------------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 237 (494)
T COG0464 206 ------------------------------------------------DLVGEYIGVTEDDFEEALKKVLPSRGVLFEDE 237 (494)
T ss_pred ------------------------------------------------ccCcccccccHHHHHHHHHhcCcccccccCCC
Confidence 000012234444444444433221 111
Q ss_pred ccCcchHHHHHHHHHHhhccccChHHHHHHHHHHHHHHHccCC----CCCCCceEEEeecCCcchHHHHHHHHHHHhcCC
Q 003094 513 KVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLK----NPNRPIASFIFSGPTGVGKSELAKALAAYYFGS 588 (848)
Q Consensus 513 ~~~~~~~~~l~~l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~----~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~ 588 (848)
... +..+.|.+.+++.+...+........ ..-++...+||+||||||||++|+++|..+
T Consensus 238 ~v~--------------~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~--- 300 (494)
T COG0464 238 DVT--------------LDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALES--- 300 (494)
T ss_pred Ccc--------------eehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhC---
Confidence 122 33444455555555544433211000 011233469999999999999999999976
Q ss_pred CCceEEecccccccccchhcccCCCCCCcccccc--cchhHHHHcCCCeEEEEcCCCcCC-----------hHHHHHHHh
Q 003094 589 EEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEG--GQLTEAVRRRPYTVVLFDEIEKAH-----------PDVFNMMLQ 655 (848)
Q Consensus 589 ~~~~i~i~~~~~~~~~~~~~l~g~~~g~~g~~~~--~~l~~~~~~~~~~Vl~lDEid~l~-----------~~~~~~Ll~ 655 (848)
+.+|+.++.+++.+. |+|.++. +.++..+++..++||||||+|++- ..+++.|+.
T Consensus 301 ~~~fi~v~~~~l~sk------------~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~ 368 (494)
T COG0464 301 RSRFISVKGSELLSK------------WVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLT 368 (494)
T ss_pred CCeEEEeeCHHHhcc------------ccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHH
Confidence 889999999877543 8887776 567888888889999999999872 258999999
Q ss_pred hhcCcEEEcCCCceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhh--ccCe
Q 003094 656 ILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLN--RLDE 733 (848)
Q Consensus 656 ~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~--R~d~ 733 (848)
.|+.-+ ...++++|.+||.... ++|+++. |||.
T Consensus 369 ~~d~~e---------~~~~v~vi~aTN~p~~------------------------------------ld~a~lR~gRfd~ 403 (494)
T COG0464 369 ELDGIE---------KAEGVLVIAATNRPDD------------------------------------LDPALLRPGRFDR 403 (494)
T ss_pred HhcCCC---------ccCceEEEecCCCccc------------------------------------cCHhhcccCccce
Confidence 997533 2256788999995443 5678887 9999
Q ss_pred EEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHHHHHHHHHHHHH
Q 003094 734 MIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSMAEKM 807 (848)
Q Consensus 734 ~i~f~~l~~~el~~I~~~~l~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~l~~~l~~~~ 807 (848)
.+.|++++.++..+|+...+...... -.++-.++.+++ ....+...++...++.....++.+..
T Consensus 404 ~i~v~~pd~~~r~~i~~~~~~~~~~~--------~~~~~~~~~l~~--~t~~~sgadi~~i~~ea~~~~~~~~~ 467 (494)
T COG0464 404 LIYVPLPDLEERLEIFKIHLRDKKPP--------LAEDVDLEELAE--ITEGYSGADIAALVREAALEALREAR 467 (494)
T ss_pred EeecCCCCHHHHHHHHHHHhcccCCc--------chhhhhHHHHHH--HhcCCCHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999998888642211 012233344444 22336667888888888888777764
No 18
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.6e-25 Score=229.77 Aligned_cols=196 Identities=27% Similarity=0.397 Sum_probs=165.4
Q ss_pred CCCCCccCChHHHHHHHHH-------------hccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEe
Q 003094 194 GKLDPVVGRQPQIERVVQI-------------LGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLD 260 (848)
Q Consensus 194 ~~ld~iiG~~~~~~~l~~~-------------l~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~ 260 (848)
.+++++-|.++++++|.+. ++..+|+++|||||||||||.+|+++|++. ++.++.+.
T Consensus 148 vtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T----------~AtFIrvv 217 (406)
T COG1222 148 VTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT----------DATFIRVV 217 (406)
T ss_pred CChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc----------CceEEEec
Confidence 4688899999999988776 456889999999999999999999999987 67899999
Q ss_pred CCcccccccccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCC---CCchHHHHHHHhhhhc-------CCceEEEE
Q 003094 261 MGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGA---AEGAIDAANILKPSLA-------RGELQCIG 330 (848)
Q Consensus 261 ~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~---~~~~~~~~~~L~~~l~-------~~~v~vI~ 330 (848)
.+.++ .+|.|+-...++.+|.-++...|+|+||||||.+...+. ..++.+++..+.++|. ++++.||+
T Consensus 218 gSElV--qKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ 295 (406)
T COG1222 218 GSELV--QKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIM 295 (406)
T ss_pred cHHHH--HHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEE
Confidence 99998 789999999999999999999999999999999986543 3456788888887775 68899999
Q ss_pred eeChHHHHhhhhcChhhhc--ccC-CCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCChhh
Q 003094 331 ATTLDEYRKHIEKDPALER--RFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDK 407 (848)
Q Consensus 331 atn~~~~~~~~~~d~al~~--Rf~-~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~p~~ 407 (848)
+||+++ -+||||+| ||+ .|+||.|+.+.|.+||+.+..++.....+ .++.+++.+.++.+. +
T Consensus 296 ATNR~D-----~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dv-----d~e~la~~~~g~sGA-----d 360 (406)
T COG1222 296 ATNRPD-----ILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDV-----DLELLARLTEGFSGA-----D 360 (406)
T ss_pred ecCCcc-----ccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCc-----CHHHHHHhcCCCchH-----H
Confidence 999999 59999999 997 89999999999999999998865433333 477788888887665 3
Q ss_pred HHHHHHHHh
Q 003094 408 AIDLIDEAG 416 (848)
Q Consensus 408 a~~ll~~a~ 416 (848)
...++.+|+
T Consensus 361 lkaictEAG 369 (406)
T COG1222 361 LKAICTEAG 369 (406)
T ss_pred HHHHHHHHh
Confidence 444444444
No 19
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=4.1e-25 Score=223.80 Aligned_cols=271 Identities=28% Similarity=0.415 Sum_probs=208.9
Q ss_pred HHHHHHHhhccccChHHHHHHHHHHHHHHHccCCCC------CCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEe
Q 003094 522 LLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNP------NRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRL 595 (848)
Q Consensus 522 l~~l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~~------~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i 595 (848)
..+++..|.+.||||+.+++.+.-++..+...+... .-...++||.||+|+|||.||+.||+.+ +.||..-
T Consensus 52 P~eik~~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~L---nVPFaiA 128 (408)
T COG1219 52 PKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKIL---NVPFAIA 128 (408)
T ss_pred hHHHHHHhhhheecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHh---CCCeeec
Confidence 456788999999999999987766654443322211 1233579999999999999999999999 8999999
Q ss_pred cccccccccchhcccCCCCCCcccccccchhHHHHc-------CCCeEEEEcCCCcCCh--------------HHHHHHH
Q 003094 596 DMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRR-------RPYTVVLFDEIEKAHP--------------DVFNMML 654 (848)
Q Consensus 596 ~~~~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~-------~~~~Vl~lDEid~l~~--------------~~~~~Ll 654 (848)
|+..+.+ .||+|++....+...++. +..+||+||||||+.. .+|.+||
T Consensus 129 DATtLTE-----------AGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALL 197 (408)
T COG1219 129 DATTLTE-----------AGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALL 197 (408)
T ss_pred cccchhh-----------ccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHH
Confidence 9988865 489999887777766654 5578999999998832 5999999
Q ss_pred hhhcCcE--EEcCCCce--------eecCCeEEEEecCC-Cc-hhhhcc--CcccccccCCCc--c-cccHHHHHHHHHH
Q 003094 655 QILEDGR--LTDSKGRT--------VDFKNTLLIMTSNV-GS-SVIEKG--GRRIGFDLDYDE--K-DSSYNRIKSLVTE 717 (848)
Q Consensus 655 ~~le~g~--~~~~~g~~--------v~~~~~iiI~tsN~-~~-~~i~~~--~~~~~f~~~~~~--~-~~~~~~~~~~~~~ 717 (848)
+++|... +++.+||+ ++.+|.+||+..-+ |- .+|.+. ...+||..+... . ......+.....+
T Consensus 198 KiiEGTvasVPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~~R~~~~~iGF~a~~~~~~~~~~~~~~l~~vepe 277 (408)
T COG1219 198 KIIEGTVASVPPQGGRKHPQQEFIQVDTSNILFICGGAFAGLEKIIKKRLGKKGIGFGAEVKSKSKKKEEGELLKQVEPE 277 (408)
T ss_pred HHHcCceeccCCCCCCCCCccceEEEcccceeEEeccccccHHHHHHHhccCCcccccccccchhhhhhHHHHHHhcChH
Confidence 9999743 55667775 44556666665544 22 233332 456888755432 1 1222344455566
Q ss_pred HHHhh-cChhhhhccCeEEEcCCCCHHHHHHHH----HHHHHHHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHH
Q 003094 718 ELKQY-FRPEFLNRLDEMIVFRQLTKLEVKEIA----DIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLR 792 (848)
Q Consensus 718 ~l~~~-~~~~ll~R~d~~i~f~~l~~~el~~I~----~~~l~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~ 792 (848)
+|.++ +-|+|.+|+..+..+.+|+++++.+|+ ...++++...|...++++.|+++++..++.++.....|+|.||
T Consensus 278 DLvkFGLIPEfIGRlPvia~L~~Lde~aLv~ILtePkNAlvKQYq~Lf~~d~V~L~F~~~AL~~IA~~A~~rkTGARGLR 357 (408)
T COG1219 278 DLVKFGLIPEFIGRLPVIATLEELDEDALVQILTEPKNALVKQYQKLFEMDGVELEFTEEALKAIAKKAIERKTGARGLR 357 (408)
T ss_pred HHHHcCCcHHHhcccceeeehhhcCHHHHHHHHhcccHHHHHHHHHHhcccCceEEEcHHHHHHHHHHHHHhccchhHHH
Confidence 77777 789999999999999999999999999 5566777777777899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 003094 793 RAIMRLLEDSMAEK 806 (848)
Q Consensus 793 ~~i~~~l~~~l~~~ 806 (848)
..++.++.+.+++.
T Consensus 358 sI~E~~lld~Mfel 371 (408)
T COG1219 358 SIIEELLLDVMFEL 371 (408)
T ss_pred HHHHHHHHHHHhhC
Confidence 99999999999876
No 20
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.93 E-value=2.5e-24 Score=236.58 Aligned_cols=229 Identities=18% Similarity=0.249 Sum_probs=192.8
Q ss_pred hccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhcc
Q 003094 530 HKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 609 (848)
Q Consensus 530 ~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l 609 (848)
...++|++.+++++.+.+.+.... -.++|++|++||||..+||+||+..-+.+.|||.+||..+......+.|
T Consensus 140 ~~~liG~S~am~~l~~~i~kvA~s-------~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ESEL 212 (464)
T COG2204 140 GGELVGESPAMQQLRRLIAKVAPS-------DASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLESEL 212 (464)
T ss_pred cCCceecCHHHHHHHHHHHHHhCC-------CCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHHHHHh
Confidence 467999999999999999877422 2459999999999999999999999888999999999999998889999
Q ss_pred cCCCCCC-cccccccchhHHHHcCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCchhh
Q 003094 610 IGSPPGY-VGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVI 688 (848)
Q Consensus 610 ~g~~~g~-~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~i 688 (848)
||+..|. .|... .-.+.+..+.+|+||||||..+|.++|..||++|++++++..+|.+....+++||++||..-.
T Consensus 213 FGhekGAFTGA~~--~r~G~fE~A~GGTLfLDEI~~mpl~~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT~~dL~-- 288 (464)
T COG2204 213 FGHEKGAFTGAIT--RRIGRFEQANGGTLFLDEIGEMPLELQVKLLRVLQEREFERVGGNKPIKVDVRIIAATNRDLE-- 288 (464)
T ss_pred hcccccCcCCccc--ccCcceeEcCCceEEeeccccCCHHHHHHHHHHHHcCeeEecCCCcccceeeEEEeecCcCHH--
Confidence 9987653 33221 123456678899999999999999999999999999999999998888889999999984332
Q ss_pred hccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeE-EEcCCCCH--HHHHHHHHHHHHHHHHHHhcCCC
Q 003094 689 EKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEM-IVFRQLTK--LEVKEIADIMLKEVFDRLKTKDI 765 (848)
Q Consensus 689 ~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~-i~f~~l~~--~el~~I~~~~l~~~~~~~~~~~~ 765 (848)
...-.+.|+++|++|+..+ |..|||.+ +|+..++.+++.++..++...
T Consensus 289 ---------------------------~~v~~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~-- 339 (464)
T COG2204 289 ---------------------------EEVAAGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRP-- 339 (464)
T ss_pred ---------------------------HHHHcCCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCCC--
Confidence 1222346999999999554 78889855 999999999999999887532
Q ss_pred eEeecHHHHHHHHHccCCCCCCchHHHHHHHHHHH
Q 003094 766 ELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLE 800 (848)
Q Consensus 766 ~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~l~ 800 (848)
...|+++++..|.. |+|++|.|+|++++++.+.
T Consensus 340 ~~~~s~~a~~~L~~--y~WPGNVREL~N~ver~~i 372 (464)
T COG2204 340 PKGFSPEALAALLA--YDWPGNVRELENVVERAVI 372 (464)
T ss_pred CCCCCHHHHHHHHh--CCCChHHHHHHHHHHHHHh
Confidence 23589999999999 9999999999999998876
No 21
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.92 E-value=1.4e-24 Score=233.53 Aligned_cols=223 Identities=19% Similarity=0.275 Sum_probs=190.5
Q ss_pred ccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhccc
Q 003094 531 KRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLI 610 (848)
Q Consensus 531 ~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~ 610 (848)
..+||++.++..+.+.+..... .-..+|+.|++||||..+||+||+...+.+.|||.+||+.+.+....|+||
T Consensus 223 ~~iIG~S~am~~ll~~i~~VA~-------Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesLlESELF 295 (550)
T COG3604 223 GGIIGRSPAMRQLLKEIEVVAK-------SDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESLLESELF 295 (550)
T ss_pred ccceecCHHHHHHHHHHHHHhc-------CCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchHHHHHHHh
Confidence 5799999999999999986632 224599999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccccccchhHHH-------HcCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCC
Q 003094 611 GSPPGYVGYTEGGQLTEAV-------RRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNV 683 (848)
Q Consensus 611 g~~~g~~g~~~~~~l~~~~-------~~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~ 683 (848)
|+..| .+++++ .-+.+|.||+|||..+|..+|..||++|++|++...+|.+....++++|++||.
T Consensus 296 GHeKG--------AFTGA~~~r~GrFElAdGGTLFLDEIGelPL~lQaKLLRvLQegEieRvG~~r~ikVDVRiIAATNR 367 (550)
T COG3604 296 GHEKG--------AFTGAINTRRGRFELADGGTLFLDEIGELPLALQAKLLRVLQEGEIERVGGDRTIKVDVRVIAATNR 367 (550)
T ss_pred ccccc--------ccccchhccCcceeecCCCeEechhhccCCHHHHHHHHHHHhhcceeecCCCceeEEEEEEEeccch
Confidence 98544 333333 336688999999999999999999999999999999998888889999999994
Q ss_pred CchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeE-EEcCCCCH--HHHHHHHHHHHHHHHHHH
Q 003094 684 GSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEM-IVFRQLTK--LEVKEIADIMLKEVFDRL 760 (848)
Q Consensus 684 ~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~-i~f~~l~~--~el~~I~~~~l~~~~~~~ 760 (848)
.-. +.--...|+.+|++|++.+ +..|||.+ +|+.-++.++++++..++
T Consensus 368 DL~-----------------------------~~V~~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~ 418 (550)
T COG3604 368 DLE-----------------------------EMVRDGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRL 418 (550)
T ss_pred hHH-----------------------------HHHHcCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhc
Confidence 332 2222346999999999665 77888865 899999999999988777
Q ss_pred hcCCC-eEeecHHHHHHHHHccCCCCCCchHHHHHHHHHHHHH
Q 003094 761 KTKDI-ELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDS 802 (848)
Q Consensus 761 ~~~~~-~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~l~~~ 802 (848)
|. .+.+++++++.|.+ |.|++|.|+|+++|++.+.-+
T Consensus 419 ---gr~~l~ls~~Al~~L~~--y~wPGNVRELen~veRavlla 456 (550)
T COG3604 419 ---GRAILSLSAEALELLSS--YEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred ---CCcccccCHHHHHHHHc--CCCCCcHHHHHHHHHHHHHHh
Confidence 55 67899999999999 999999999999999988744
No 22
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.91 E-value=6.8e-22 Score=238.70 Aligned_cols=276 Identities=22% Similarity=0.330 Sum_probs=207.5
Q ss_pred HHHHHHHhhCCCCcccCcchHHHHHHHHHHhhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHH
Q 003094 499 IQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELA 578 (848)
Q Consensus 499 i~~~~~~~~g~p~~~~~~~~~~~l~~l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA 578 (848)
+...+..++++|..+...+ ..++..+++.|.++++||+.+++.|.+.+....... .+.. .++||+||||||||++|
T Consensus 289 ~~~yl~~~~~ip~~~~~~~-~~~~~~~~~~l~~~~~G~~~~k~~i~~~~~~~~~~~-~~~~--~~lll~GppG~GKT~lA 364 (775)
T TIGR00763 289 TRNYLDWLTDLPWGKYSKE-NLDLKRAKEILDEDHYGLKKVKERILEYLAVQKLRG-KMKG--PILCLVGPPGVGKTSLG 364 (775)
T ss_pred HHHHHHHHHCCCCcccccc-hhhHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhc-CCCC--ceEEEECCCCCCHHHHH
Confidence 4566677889998877665 667889999999999999999999998776543321 1122 25999999999999999
Q ss_pred HHHHHHhcCCCCceEEecccccccccchhcccCCCCCCcccccccchhHHHHc--CCCeEEEEcCCCcCChH----HHHH
Q 003094 579 KALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRR--RPYTVVLFDEIEKAHPD----VFNM 652 (848)
Q Consensus 579 ~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~--~~~~Vl~lDEid~l~~~----~~~~ 652 (848)
++||+.+ +.+++.++++.+. ..+.+.|....|+|...+ .+.+.+.. ..+.||||||||+++++ ..+.
T Consensus 365 k~iA~~l---~~~~~~i~~~~~~---~~~~i~g~~~~~~g~~~g-~i~~~l~~~~~~~~villDEidk~~~~~~~~~~~a 437 (775)
T TIGR00763 365 KSIAKAL---NRKFVRFSLGGVR---DEAEIRGHRRTYVGAMPG-RIIQGLKKAKTKNPLFLLDEIDKIGSSFRGDPASA 437 (775)
T ss_pred HHHHHHh---cCCeEEEeCCCcc---cHHHHcCCCCceeCCCCc-hHHHHHHHhCcCCCEEEEechhhcCCccCCCHHHH
Confidence 9999998 6789999887653 244566766678777544 33334432 23459999999999764 4589
Q ss_pred HHhhhcC---cEEEcCC-CceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhh
Q 003094 653 MLQILED---GRLTDSK-GRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFL 728 (848)
Q Consensus 653 Ll~~le~---g~~~~~~-g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll 728 (848)
|+++|+. +.+.+.. +..+++++++||+|||... .++++|+
T Consensus 438 Ll~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~------------------------------------~i~~~L~ 481 (775)
T TIGR00763 438 LLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSID------------------------------------TIPRPLL 481 (775)
T ss_pred HHHhcCHHhcCccccccCCceeccCCEEEEEecCCch------------------------------------hCCHHHh
Confidence 9999984 5566543 6678889999999999422 3689999
Q ss_pred hccCeEEEcCCCCHHHHHHHHHHHHHHHHHHHhcCC---CeEeecHHHHHHHHHccCCCCCCchHHHHHHHHHHHHHHHH
Q 003094 729 NRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKD---IELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSMAE 805 (848)
Q Consensus 729 ~R~d~~i~f~~l~~~el~~I~~~~l~~~~~~~~~~~---~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~l~~~l~~ 805 (848)
+|| .+|.|++|+.++..+|+..++.. +.+...+ ..+.++++++.+|+. +|...+|+|+|++.+++++.....+
T Consensus 482 ~R~-~vi~~~~~~~~e~~~I~~~~l~~--~~~~~~~l~~~~~~~~~~~l~~i~~-~~~~e~g~R~l~r~i~~~~~~~~~~ 557 (775)
T TIGR00763 482 DRM-EVIELSGYTEEEKLEIAKKYLIP--KALEDHGLKPDELKITDEALLLLIK-YYTREAGVRNLERQIEKICRKAAVK 557 (775)
T ss_pred CCe-eEEecCCCCHHHHHHHHHHHHHH--HHHHHcCCCcceEEECHHHHHHHHH-hcChhcCChHHHHHHHHHHHHHHHH
Confidence 999 68999999999999999887753 2222223 367899999999998 6999999999999999999888655
Q ss_pred HHHccccCCCCEEEEEEcCC
Q 003094 806 KMLAREIKEGDSVIVDVDSD 825 (848)
Q Consensus 806 ~~l~~~~~~~~~~~v~~~~~ 825 (848)
.+..+....+.+..|.++.+
T Consensus 558 ~~~~~~~~~~~~~~v~i~~~ 577 (775)
T TIGR00763 558 LVEQGEKKKSEAESVVITPD 577 (775)
T ss_pred HHhccCcccCCcccccCCHH
Confidence 54445555454444444443
No 23
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.91 E-value=6.8e-24 Score=231.69 Aligned_cols=231 Identities=18% Similarity=0.279 Sum_probs=193.2
Q ss_pred HhhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchh
Q 003094 528 TLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVS 607 (848)
Q Consensus 528 ~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~ 607 (848)
+-+++++|.+.++..+.+.+++.. ....++|+.|++||||..+|++||+.+-+.+.|||.+||..+.+.-..|
T Consensus 242 y~f~~Iig~S~~m~~~~~~akr~A-------~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe~LlES 314 (560)
T COG3829 242 YTFDDIIGESPAMLRVLELAKRIA-------KTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPETLLES 314 (560)
T ss_pred cchhhhccCCHHHHHHHHHHHhhc-------CCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCHHHHHH
Confidence 346789999999988888887662 2234699999999999999999999999999999999999999999999
Q ss_pred cccCCCCC-CcccccccchhHHHHcCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCch
Q 003094 608 KLIGSPPG-YVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSS 686 (848)
Q Consensus 608 ~l~g~~~g-~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~ 686 (848)
.|||...| ++|...++. .+.+..+++|.||||||..+|...|..||++|+++++...+|......++++|++||....
T Consensus 315 ELFGye~GAFTGA~~~GK-~GlfE~A~gGTLFLDEIgempl~LQaKLLRVLQEkei~rvG~t~~~~vDVRIIAATN~nL~ 393 (560)
T COG3829 315 ELFGYEKGAFTGASKGGK-PGLFELANGGTLFLDEIGEMPLPLQAKLLRVLQEKEIERVGGTKPIPVDVRIIAATNRNLE 393 (560)
T ss_pred HHhCcCCccccccccCCC-CcceeeccCCeEEehhhccCCHHHHHHHHHHHhhceEEecCCCCceeeEEEEEeccCcCHH
Confidence 99998776 444433222 3445567889999999999999999999999999999999998888899999999994432
Q ss_pred hhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeE-EEcCCCCH--HHHHHHHHHHHHHHHHHHhcC
Q 003094 687 VIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEM-IVFRQLTK--LEVKEIADIMLKEVFDRLKTK 763 (848)
Q Consensus 687 ~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~-i~f~~l~~--~el~~I~~~~l~~~~~~~~~~ 763 (848)
... -.+.|+.+|+.|++.+ |..|||.+ +|+..++..+++++..++.
T Consensus 394 ~~i-----------------------------~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~-- 442 (560)
T COG3829 394 KMI-----------------------------AEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYG-- 442 (560)
T ss_pred HHH-----------------------------hcCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcC--
Confidence 111 1235999999999665 88899954 9999999999999988873
Q ss_pred CCeEe-ecHHHHHHHHHccCCCCCCchHHHHHHHHHHH
Q 003094 764 DIELQ-VTERFRERVVEEGYNPSYGARPLRRAIMRLLE 800 (848)
Q Consensus 764 ~~~l~-i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~l~ 800 (848)
..+. ++++++..|.+ |+|++|.|+|++.|++++.
T Consensus 443 -~~v~~ls~~a~~~L~~--y~WPGNVRELeNviER~v~ 477 (560)
T COG3829 443 -RNVKGLSPDALALLLR--YDWPGNVRELENVIERAVN 477 (560)
T ss_pred -CCcccCCHHHHHHHHh--CCCCchHHHHHHHHHHHHh
Confidence 4443 89999999999 9999999999999998875
No 24
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.91 E-value=2e-24 Score=211.79 Aligned_cols=155 Identities=54% Similarity=0.860 Sum_probs=128.7
Q ss_pred CCceEEEeecCCcchHHHHHHHHHHHhc-CCCCceEEeccccccc----ccchhcccCCCCCCcccccccchhHHHHcCC
Q 003094 559 RPIASFIFSGPTGVGKSELAKALAAYYF-GSEEAMIRLDMSEFME----RHTVSKLIGSPPGYVGYTEGGQLTEAVRRRP 633 (848)
Q Consensus 559 ~p~~~lLl~Gp~GtGKT~lA~~la~~l~-~~~~~~i~i~~~~~~~----~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~ 633 (848)
+|..++||+||+|||||++|++||+.++ +...+++.+||+++.. .+.++.++|.+++|++..+.
T Consensus 1 ~p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~v~~~~~----------- 69 (171)
T PF07724_consen 1 RPKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDDVESSVSKLLGSPPGYVGAEEG----------- 69 (171)
T ss_dssp S-SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTTCHHHHHHH-----------
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccchHHhhhhhhhhcccceeeccch-----------
Confidence 5778999999999999999999999999 8899999999999999 77888888988888776432
Q ss_pred CeEEEEcCCCcCCh-----------HHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCchhhhccCcccccccCCC
Q 003094 634 YTVVLFDEIEKAHP-----------DVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYD 702 (848)
Q Consensus 634 ~~Vl~lDEid~l~~-----------~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~ 702 (848)
+|||||||||+++ .+|+.||++||+|.+++..|+.++++|++||+|+|++...+......-
T Consensus 70 -gVVllDEidKa~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~~~~~~~~~~~------- 141 (171)
T PF07724_consen 70 -GVVLLDEIDKAHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGAEEIIDASRSG------- 141 (171)
T ss_dssp -TEEEEETGGGCSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSSTHHHHHCHHHC-------
T ss_pred -hhhhhHHHhhccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccccchhhhhhccc-------
Confidence 3999999999999 999999999999999999999999999999999999887654421110
Q ss_pred cccccHHHHHHHHHHHHHhhcChhhhhccCeE
Q 003094 703 EKDSSYNRIKSLVTEELKQYFRPEFLNRLDEM 734 (848)
Q Consensus 703 ~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~ 734 (848)
..............+...|.|+|++|||.+
T Consensus 142 --~~~~~~~~~~~~~~~~~~f~pEf~~Ri~~i 171 (171)
T PF07724_consen 142 --EAIEQEQEEQIRDLVEYGFRPEFLGRIDVI 171 (171)
T ss_dssp --TCCHHHHCHHHHHHHHHTS-HHHHTTSSEE
T ss_pred --cccHHHHHHHHHHHHHcCCCHHHHccCCcC
Confidence 122333445556677788999999999764
No 25
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.91 E-value=3e-23 Score=204.41 Aligned_cols=193 Identities=23% Similarity=0.342 Sum_probs=157.3
Q ss_pred hhhhhhcCCCCCccCChHHHHH---HHHHhcc------CCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEE
Q 003094 187 LTKLAEEGKLDPVVGRQPQIER---VVQILGR------RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVI 257 (848)
Q Consensus 187 l~~~~~~~~ld~iiG~~~~~~~---l~~~l~~------~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~ 257 (848)
..+....-++|++|||++.++. +.+.|.. =.++|+|||||||||||++|+++|++. +.+++
T Consensus 111 ~~e~~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~----------kvp~l 180 (368)
T COG1223 111 DREIISDITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA----------KVPLL 180 (368)
T ss_pred hhhhhccccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc----------CCceE
Confidence 4455566789999999998875 3444443 246899999999999999999999987 57789
Q ss_pred EEeCCcccccccccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCC----CchHHHHHHHhhhhc----CCceEEE
Q 003094 258 TLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAA----EGAIDAANILKPSLA----RGELQCI 329 (848)
Q Consensus 258 ~~~~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~----~~~~~~~~~L~~~l~----~~~v~vI 329 (848)
.+....++ +.++|+...+++.+++++++..|||+||||+|.+.-++.- ..-.+++|.|+..|+ +.+++.|
T Consensus 181 ~vkat~li--GehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtI 258 (368)
T COG1223 181 LVKATELI--GEHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTI 258 (368)
T ss_pred EechHHHH--HHHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEE
Confidence 99988888 6789999999999999999999999999999998643221 123467788877664 6789999
Q ss_pred EeeChHHHHhhhhcChhhhcccC-CCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhccccc
Q 003094 330 GATTLDEYRKHIEKDPALERRFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISD 401 (848)
Q Consensus 330 ~atn~~~~~~~~~~d~al~~Rf~-~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~ 401 (848)
++||.++ .+|+++++||. .|+|..|+.++|.+|++..++++. +.+.-. ++.++..+.++.+.
T Consensus 259 aaTN~p~-----~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~P----lpv~~~-~~~~~~~t~g~SgR 321 (368)
T COG1223 259 AATNRPE-----LLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFP----LPVDAD-LRYLAAKTKGMSGR 321 (368)
T ss_pred eecCChh-----hcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCC----CccccC-HHHHHHHhCCCCch
Confidence 9999999 58999999997 999999999999999999888653 333322 77888888887665
No 26
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=2e-23 Score=231.09 Aligned_cols=201 Identities=25% Similarity=0.385 Sum_probs=170.4
Q ss_pred cCCCCCccCChHHHHHHHHH-------------hccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEE
Q 003094 193 EGKLDPVVGRQPQIERVVQI-------------LGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITL 259 (848)
Q Consensus 193 ~~~ld~iiG~~~~~~~l~~~-------------l~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~ 259 (848)
..+++++-|+++.++.|.+. ++..++++||||||||||||++|+++|++. +..++++
T Consensus 430 ~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~----------~~nFlsv 499 (693)
T KOG0730|consen 430 NVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEA----------GMNFLSV 499 (693)
T ss_pred CCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhh----------cCCeeec
Confidence 34688999999988887754 344788999999999999999999999998 6778999
Q ss_pred eCCcccccccccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCCc---hHHHHHHHhhhhc----CCceEEEEee
Q 003094 260 DMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEG---AIDAANILKPSLA----RGELQCIGAT 332 (848)
Q Consensus 260 ~~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~~---~~~~~~~L~~~l~----~~~v~vI~at 332 (848)
....+. ++|.|+.|..++.+|+.+++..|+|+|+||||.+.+++.++. ...+.+.|+..|+ ..++.|||+|
T Consensus 500 kgpEL~--sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAAT 577 (693)
T KOG0730|consen 500 KGPELF--SKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAAT 577 (693)
T ss_pred cCHHHH--HHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEecc
Confidence 888888 789999999999999999999999999999999998765433 3456677776665 4579999999
Q ss_pred ChHHHHhhhhcChhhhc--ccC-CCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChH-HHHHHHhhhhcccccCCChhhH
Q 003094 333 TLDEYRKHIEKDPALER--RFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDE-ALVSAAQLSYQYISDRFLPDKA 408 (848)
Q Consensus 333 n~~~~~~~~~~d~al~~--Rf~-~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~-~l~~l~~~s~~~~~~~~~p~~a 408 (848)
|+++ .+|+++.| ||+ .|+||.|+.+.|.+|++..+++ ..++++ ++..+++.+.+|.+. +.
T Consensus 578 NRpd-----~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kk------mp~~~~vdl~~La~~T~g~SGA-----el 641 (693)
T KOG0730|consen 578 NRPD-----MIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKK------MPFSEDVDLEELAQATEGYSGA-----EI 641 (693)
T ss_pred CChh-----hcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhc------CCCCccccHHHHHHHhccCChH-----HH
Confidence 9999 69999999 997 8999999999999999988874 345554 688999999999876 78
Q ss_pred HHHHHHHhhHHHH
Q 003094 409 IDLIDEAGSRVRL 421 (848)
Q Consensus 409 ~~ll~~a~~~~~~ 421 (848)
..++.+|+..+-.
T Consensus 642 ~~lCq~A~~~a~~ 654 (693)
T KOG0730|consen 642 VAVCQEAALLALR 654 (693)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888765543
No 27
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.90 E-value=2.2e-21 Score=231.46 Aligned_cols=261 Identities=21% Similarity=0.323 Sum_probs=202.5
Q ss_pred HHHHHhhCCCCcccCcchHHHHHHHHHHhhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHH
Q 003094 501 HIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKA 580 (848)
Q Consensus 501 ~~~~~~~g~p~~~~~~~~~~~l~~l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~ 580 (848)
..+.-...+|....+.+ ..++.+.++.|.++.+|++.+++.|.+.+...... ..... ..++|+||||+|||++++.
T Consensus 293 ~yl~~~~~~pw~~~~~~-~~~~~~~~~~l~~~~~g~~~vK~~i~~~l~~~~~~-~~~~g--~~i~l~GppG~GKTtl~~~ 368 (784)
T PRK10787 293 GYIDWMVQVPWNARSKV-KKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRV-NKIKG--PILCLVGPPGVGKTSLGQS 368 (784)
T ss_pred HHHHHHHhCCCCCCCcc-cccHHHHHHHhhhhccCHHHHHHHHHHHHHHHHhc-ccCCC--ceEEEECCCCCCHHHHHHH
Confidence 33444556777765543 45788899999999999999999999887744321 11122 2489999999999999999
Q ss_pred HHHHhcCCCCceEEecccccccccchhcccCCCCCCcccccccchhHHHHcC--CCeEEEEcCCCcCChHH----HHHHH
Q 003094 581 LAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRR--PYTVVLFDEIEKAHPDV----FNMML 654 (848)
Q Consensus 581 la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~--~~~Vl~lDEid~l~~~~----~~~Ll 654 (848)
+|+.+ +.++++++++...+ ...+.|....|.|...+ .+...+..+ .+.||||||+|+++++. ++.|+
T Consensus 369 ia~~l---~~~~~~i~~~~~~d---~~~i~g~~~~~~g~~~G-~~~~~l~~~~~~~~villDEidk~~~~~~g~~~~aLl 441 (784)
T PRK10787 369 IAKAT---GRKYVRMALGGVRD---EAEIRGHRRTYIGSMPG-KLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALL 441 (784)
T ss_pred HHHHh---CCCEEEEEcCCCCC---HHHhccchhccCCCCCc-HHHHHHHhcCCCCCEEEEEChhhcccccCCCHHHHHH
Confidence 99988 67888888777643 45566766667776554 444444432 35699999999999875 59999
Q ss_pred hhhcCc---EEEcCC-CceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhc
Q 003094 655 QILEDG---RLTDSK-GRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNR 730 (848)
Q Consensus 655 ~~le~g---~~~~~~-g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R 730 (848)
++|+.+ .+.|.. .-.++.++++||+|+|.- .++|+|++|
T Consensus 442 evld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~-------------------------------------~i~~aLl~R 484 (784)
T PRK10787 442 EVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSM-------------------------------------NIPAPLLDR 484 (784)
T ss_pred HHhccccEEEEecccccccccCCceEEEEcCCCC-------------------------------------CCCHHHhcc
Confidence 999864 344433 345778999999999832 167999999
Q ss_pred cCeEEEcCCCCHHHHHHHHHHHHH-HHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHHHHHHHHHHHHHHc
Q 003094 731 LDEMIVFRQLTKLEVKEIADIMLK-EVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSMAEKMLA 809 (848)
Q Consensus 731 ~d~~i~f~~l~~~el~~I~~~~l~-~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~l~~~l~~~~l~ 809 (848)
| .+|.|.+|+.+++.+|+...|. +..++....+..+.++++++++|++ +|++.+|+|+|+|.|++++.+.+++.++.
T Consensus 485 ~-~ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~-~yt~e~GaR~LeR~I~~i~r~~l~~~~~~ 562 (784)
T PRK10787 485 M-EVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIR-YYTREAGVRSLEREISKLCRKAVKQLLLD 562 (784)
T ss_pred e-eeeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHH-hCCcccCCcHHHHHHHHHHHHHHHHHHhc
Confidence 9 7999999999999999998885 4445554556689999999999997 89999999999999999999999998776
Q ss_pred cc
Q 003094 810 RE 811 (848)
Q Consensus 810 ~~ 811 (848)
+.
T Consensus 563 ~~ 564 (784)
T PRK10787 563 KS 564 (784)
T ss_pred CC
Confidence 53
No 28
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.90 E-value=2.5e-22 Score=216.95 Aligned_cols=260 Identities=27% Similarity=0.388 Sum_probs=190.1
Q ss_pred HHHHHHhhccccChHHHHHHHHHHHHHH--HccCCCCC---CCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecc
Q 003094 523 LKMEETLHKRVIGQDEAVKAISRAIRRA--RVGLKNPN---RPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDM 597 (848)
Q Consensus 523 ~~l~~~l~~~vigq~~~~~~l~~~~~~~--~~~~~~~~---~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~ 597 (848)
..+.+.|.+.|+||+++++.+..++..+ +.++..+. .+..++||+||||||||++|+.||+.+ +.+|+.+|+
T Consensus 7 ~~I~~~Ld~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l---~~~fi~vD~ 83 (443)
T PRK05201 7 REIVSELDKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLA---NAPFIKVEA 83 (443)
T ss_pred HHHHHHhccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHh---CChheeecc
Confidence 4567789999999999999999998653 22222211 123679999999999999999999998 899999999
Q ss_pred cccccccc----------------------------------------hhcccCCC------------------------
Q 003094 598 SEFMERHT----------------------------------------VSKLIGSP------------------------ 613 (848)
Q Consensus 598 ~~~~~~~~----------------------------------------~~~l~g~~------------------------ 613 (848)
+.+.+... +..|.+..
T Consensus 84 t~f~e~GyvG~d~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l 163 (443)
T PRK05201 84 TKFTEVGYVGRDVESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKL 163 (443)
T ss_pred hhhccCCcccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHH
Confidence 87664210 00111100
Q ss_pred ---------------C--C----Cc--ccccc------------------------------------------cchhHH
Q 003094 614 ---------------P--G----YV--GYTEG------------------------------------------GQLTEA 628 (848)
Q Consensus 614 ---------------~--g----~~--g~~~~------------------------------------------~~l~~~ 628 (848)
. + +. |.... ....++
T Consensus 164 ~~g~ldd~~iei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~a 243 (443)
T PRK05201 164 REGELDDKEIEIEVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEA 243 (443)
T ss_pred HcCCcCCcEEEEEecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHH
Confidence 0 0 00 00000 000122
Q ss_pred HHc-CCCeEEEEcCCCcCC------------hHHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCchhhhccCccc
Q 003094 629 VRR-RPYTVVLFDEIEKAH------------PDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRI 695 (848)
Q Consensus 629 ~~~-~~~~Vl~lDEid~l~------------~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~i~~~~~~~ 695 (848)
+.. ...||||||||||+. ..||..||+++|...+.- ....++..|++||++.-+...
T Consensus 244 i~~ae~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~-k~~~i~T~~ILFI~~GAF~~~--------- 313 (443)
T PRK05201 244 IERVEQNGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVST-KYGMVKTDHILFIASGAFHVS--------- 313 (443)
T ss_pred HHHHHcCCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeee-cceeEECCceeEEecCCcCCC---------
Confidence 333 367899999999984 249999999999876654 345788999999999753210
Q ss_pred ccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHH----HHHHHHHHHHHhcCCCeEeecH
Q 003094 696 GFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIA----DIMLKEVFDRLKTKDIELQVTE 771 (848)
Q Consensus 696 ~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~----~~~l~~~~~~~~~~~~~l~i~~ 771 (848)
.. .-+-|+|.+||..++.+.+|+.+++..|+ ...++++...+...|+++.|++
T Consensus 314 -----kp------------------~DlIPEl~GR~Pi~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd 370 (443)
T PRK05201 314 -----KP------------------SDLIPELQGRFPIRVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTD 370 (443)
T ss_pred -----Ch------------------hhccHHHhCccceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcH
Confidence 00 01459999999999999999999999999 6688888888889999999999
Q ss_pred HHHHHHHHccCC-----CCCCchHHHHHHHHHHHHHHHHHHHccccCCCCEEEEEE
Q 003094 772 RFRERVVEEGYN-----PSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDV 822 (848)
Q Consensus 772 ~a~~~l~~~~~~-----~~~g~r~L~~~i~~~l~~~l~~~~l~~~~~~~~~~~v~~ 822 (848)
+++++|++.++. ...|||.|+..+++++.+..+++ ....+.++.|+-
T Consensus 371 ~Al~~IA~~A~~~N~~~~~iGAR~LrtI~E~~L~d~~Fe~----p~~~~~~v~I~~ 422 (443)
T PRK05201 371 DAIRRIAEIAYQVNEKTENIGARRLHTVMEKLLEDISFEA----PDMSGETVTIDA 422 (443)
T ss_pred HHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHhccC----CCCCCCEEEECH
Confidence 999999998765 68999999999999999888877 223456666643
No 29
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=2e-22 Score=219.59 Aligned_cols=242 Identities=24% Similarity=0.357 Sum_probs=180.3
Q ss_pred HHhhCCCchHHHHHHHcCCChHHHHHHHHHHhccccccccCCCCCCCCCCCccchHHhhhhhhhhhhcCCCCCccCChHH
Q 003094 126 GLLREGEGVAARVLENLGADPSNIRTQVIRMVGESTEAVGAGVGGGSSGNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQ 205 (848)
Q Consensus 126 all~~~~~~a~~iL~~~gv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~ld~iiG~~~~ 205 (848)
++++.++....+.+..+.+.++....++...-. ..+. .++.+- ...+++++-+.++.
T Consensus 463 ~i~~~~d~~S~E~~~~L~i~~eDF~~Al~~iQP-SakR------EGF~tV----------------PdVtW~dIGaL~~v 519 (802)
T KOG0733|consen 463 AILNNPDPLSKELLEGLSIKFEDFEEALSKIQP-SAKR------EGFATV----------------PDVTWDDIGALEEV 519 (802)
T ss_pred HHHhCCCCcChHHhccceecHHHHHHHHHhcCc-chhc------ccceec----------------CCCChhhcccHHHH
Confidence 666666666677777777777776655432211 1110 011111 12345555555554
Q ss_pred HHHH-------------HHHhccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccccccccc
Q 003094 206 IERV-------------VQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRG 272 (848)
Q Consensus 206 ~~~l-------------~~~l~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~~~~g 272 (848)
..+| .+.++...+.++||+||||||||.+|+++|++. +..++.+..-.+. .+|+|
T Consensus 520 R~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEa----------g~NFisVKGPELl--NkYVG 587 (802)
T KOG0733|consen 520 RLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEA----------GANFISVKGPELL--NKYVG 587 (802)
T ss_pred HHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhc----------cCceEeecCHHHH--HHHhh
Confidence 4443 444566778999999999999999999999987 6778999888888 68999
Q ss_pred hHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCCc---hHHHHHHHhhhhc----CCceEEEEeeChHHHHhhhhcCh
Q 003094 273 EFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEG---AIDAANILKPSLA----RGELQCIGATTLDEYRKHIEKDP 345 (848)
Q Consensus 273 ~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~~---~~~~~~~L~~~l~----~~~v~vI~atn~~~~~~~~~~d~ 345 (848)
+.|..++.+|.+++.+.|||+|+||+|.|++.++..+ ...++|.|+..|+ +.++.||++||+++ -+||
T Consensus 588 ESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPD-----iIDp 662 (802)
T KOG0733|consen 588 ESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPD-----IIDP 662 (802)
T ss_pred hHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCc-----ccch
Confidence 9999999999999999999999999999998766544 4567777777665 66799999999999 5899
Q ss_pred hhhc--ccC-CCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChH-HHHHHHhhhh--cccccCCChhhHHHHHHHHh
Q 003094 346 ALER--RFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDE-ALVSAAQLSY--QYISDRFLPDKAIDLIDEAG 416 (848)
Q Consensus 346 al~~--Rf~-~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~-~l~~l~~~s~--~~~~~~~~p~~a~~ll~~a~ 416 (848)
+++| ||+ .++++.|+.++|.+||+.+.+. ++..++++ .++.+++... +|.+. +.-.|+++|.
T Consensus 663 AiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn----~k~pl~~dVdl~eia~~~~c~gftGA-----DLaaLvreAs 730 (802)
T KOG0733|consen 663 AILRPGRLDKLLYVGLPNAEERVAILKTITKN----TKPPLSSDVDLDEIARNTKCEGFTGA-----DLAALVREAS 730 (802)
T ss_pred hhcCCCccCceeeecCCCHHHHHHHHHHHhcc----CCCCCCcccCHHHHhhcccccCCchh-----hHHHHHHHHH
Confidence 9999 998 7899999999999999998873 44444443 5788887766 77665 4555555553
No 30
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.89 E-value=2e-20 Score=211.39 Aligned_cols=332 Identities=18% Similarity=0.259 Sum_probs=211.5
Q ss_pred CeEEEEcccchhhhCCCCCchHHHHHHHhhhh----cCCceEEEEeeChHHHHhhhhcChhhhcccCCCcCCCCCHHHHH
Q 003094 290 EIILFIDEVHTLIGAGAAEGAIDAANILKPSL----ARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETI 365 (848)
Q Consensus 290 ~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l----~~~~v~vI~atn~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~ 365 (848)
+.|+++.|+|.++.. ..+...|+.+. ..++.+|+.+.+ +.+++.|.+-+..+++|.|+.+|+.
T Consensus 82 ~~~~vl~d~h~~~~~------~~~~r~l~~l~~~~~~~~~~~i~~~~~-------~~~p~el~~~~~~~~~~lP~~~ei~ 148 (489)
T CHL00195 82 PALFLLKDFNRFLND------ISISRKLRNLSRILKTQPKTIIIIASE-------LNIPKELKDLITVLEFPLPTESEIK 148 (489)
T ss_pred CcEEEEecchhhhcc------hHHHHHHHHHHHHHHhCCCEEEEEcCC-------CCCCHHHHhceeEEeecCcCHHHHH
Confidence 689999999999832 22334444332 234444444432 1578888887789999999999999
Q ss_pred HHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCChhhHHHHHHHHhhHHHHhhcCCchHHHHHHHHHHHHHHHHH
Q 003094 366 QILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKN 445 (848)
Q Consensus 366 ~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~p~~a~~ll~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 445 (848)
++++.+.. ..+..++++.++.+++.+.|.... ++..++..+.. .
T Consensus 149 ~~l~~~~~----~~~~~~~~~~~~~l~~~~~gls~~-----~~~~~~~~~~~----~----------------------- 192 (489)
T CHL00195 149 KELTRLIK----SLNIKIDSELLENLTRACQGLSLE-----RIRRVLSKIIA----T----------------------- 192 (489)
T ss_pred HHHHHHHH----hcCCCCCHHHHHHHHHHhCCCCHH-----HHHHHHHHHHH----H-----------------------
Confidence 99987765 346678888898888877775432 22222222110 0
Q ss_pred HHHcCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCCCCccCHHHHHHHHHHh------hCC-CCcccCcch
Q 003094 446 EAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAW------TGI-PVEKVSTDE 518 (848)
Q Consensus 446 ~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~di~~~~~~~------~g~-p~~~~~~~~ 518 (848)
...++.+++..+++.. +++ .....
T Consensus 193 ---------------------------------------------~~~~~~~~~~~i~~~k~q~~~~~~~le~~~~---- 223 (489)
T CHL00195 193 ---------------------------------------------YKTIDENSIPLILEEKKQIISQTEILEFYSV---- 223 (489)
T ss_pred ---------------------------------------------cCCCChhhHHHHHHHHHHHHhhhccccccCC----
Confidence 0011111111111000 000 00000
Q ss_pred HHHHHHHHHHhhccccChHHHHHHHHHHHHH-----HHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceE
Q 003094 519 SDRLLKMEETLHKRVIGQDEAVKAISRAIRR-----ARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMI 593 (848)
Q Consensus 519 ~~~l~~l~~~l~~~vigq~~~~~~l~~~~~~-----~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i 593 (848)
..-+++|.|.+..++.+...... ...|+..| .++||+||||||||++|+++|..+ +.+|+
T Consensus 224 --------~~~~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~p----kGILL~GPpGTGKTllAkaiA~e~---~~~~~ 288 (489)
T CHL00195 224 --------NEKISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTP----RGLLLVGIQGTGKSLTAKAIANDW---QLPLL 288 (489)
T ss_pred --------CCCHHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCC----ceEEEECCCCCcHHHHHHHHHHHh---CCCEE
Confidence 01134677777776666543221 22344443 359999999999999999999998 78999
Q ss_pred EecccccccccchhcccCCCCCCcccccc--cchhHHHHcCCCeEEEEcCCCcCCh------------HHHHHHHhhhcC
Q 003094 594 RLDMSEFMERHTVSKLIGSPPGYVGYTEG--GQLTEAVRRRPYTVVLFDEIEKAHP------------DVFNMMLQILED 659 (848)
Q Consensus 594 ~i~~~~~~~~~~~~~l~g~~~g~~g~~~~--~~l~~~~~~~~~~Vl~lDEid~l~~------------~~~~~Ll~~le~ 659 (848)
.++++.+.. +|+|.++. ..++..++...+|||||||||++.. .+++.|++.|++
T Consensus 289 ~l~~~~l~~------------~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~ 356 (489)
T CHL00195 289 RLDVGKLFG------------GIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSE 356 (489)
T ss_pred EEEhHHhcc------------cccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhc
Confidence 999877543 26666543 4556666777889999999997632 366777888865
Q ss_pred cEEEcCCCceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhh--ccCeEEEc
Q 003094 660 GRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLN--RLDEMIVF 737 (848)
Q Consensus 660 g~~~~~~g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~--R~d~~i~f 737 (848)
.. .++++|+|||... .++|+++. |||.++.+
T Consensus 357 ~~-----------~~V~vIaTTN~~~------------------------------------~Ld~allR~GRFD~~i~v 389 (489)
T CHL00195 357 KK-----------SPVFVVATANNID------------------------------------LLPLEILRKGRFDEIFFL 389 (489)
T ss_pred CC-----------CceEEEEecCChh------------------------------------hCCHHHhCCCcCCeEEEe
Confidence 22 4678899998443 26788874 99999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHHHHHHHHH
Q 003094 738 RQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSM 803 (848)
Q Consensus 738 ~~l~~~el~~I~~~~l~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~l~~~l 803 (848)
+.++.++..+|++.++.+... . ..++.-++.|+. ....|...++++++......+.
T Consensus 390 ~lP~~~eR~~Il~~~l~~~~~-------~-~~~~~dl~~La~--~T~GfSGAdI~~lv~eA~~~A~ 445 (489)
T CHL00195 390 DLPSLEEREKIFKIHLQKFRP-------K-SWKKYDIKKLSK--LSNKFSGAEIEQSIIEAMYIAF 445 (489)
T ss_pred CCcCHHHHHHHHHHHHhhcCC-------C-cccccCHHHHHh--hcCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999988876321 0 012233566666 4456777888877776655443
No 31
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.88 E-value=1.5e-21 Score=210.84 Aligned_cols=260 Identities=27% Similarity=0.387 Sum_probs=188.3
Q ss_pred HHHHHHhhccccChHHHHHHHHHHHHHHHccCCC-C----CCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecc
Q 003094 523 LKMEETLHKRVIGQDEAVKAISRAIRRARVGLKN-P----NRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDM 597 (848)
Q Consensus 523 ~~l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~-~----~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~ 597 (848)
.++.+.|.+.|+||+++++.+..++..++..... + ..+..++||+||||||||++|++||+.+ +.+|+.+|+
T Consensus 4 ~~I~~~Ld~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l---~~~fi~vda 80 (441)
T TIGR00390 4 REIVAELDKYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLA---NAPFIKVEA 80 (441)
T ss_pred HHHHHHHhhhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHh---CCeEEEeec
Confidence 3567788999999999999999988865322211 1 1123579999999999999999999998 889999998
Q ss_pred ccccc-----ccc---h--------------------------------hcccCCCCCCcc-------------------
Q 003094 598 SEFME-----RHT---V--------------------------------SKLIGSPPGYVG------------------- 618 (848)
Q Consensus 598 ~~~~~-----~~~---~--------------------------------~~l~g~~~g~~g------------------- 618 (848)
..+.+ ... + ..|+.......|
T Consensus 81 t~~~e~g~vG~dvE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l 160 (441)
T TIGR00390 81 TKFTEVGYVGRDVESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKL 160 (441)
T ss_pred ceeecCCcccCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHH
Confidence 76542 110 0 011100000000
Q ss_pred -----------------------------ccccc-c-----------------------------------------hhH
Q 003094 619 -----------------------------YTEGG-Q-----------------------------------------LTE 627 (848)
Q Consensus 619 -----------------------------~~~~~-~-----------------------------------------l~~ 627 (848)
....+ . ..+
T Consensus 161 ~~g~ldd~~iei~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~ 240 (441)
T TIGR00390 161 REGELDDKEIEIDVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQE 240 (441)
T ss_pred hcCCccCcEEEEeecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHH
Confidence 00000 0 011
Q ss_pred HHHc-CCCeEEEEcCCCcCCh------------HHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCchhhhccCcc
Q 003094 628 AVRR-RPYTVVLFDEIEKAHP------------DVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRR 694 (848)
Q Consensus 628 ~~~~-~~~~Vl~lDEid~l~~------------~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~i~~~~~~ 694 (848)
+++. ...+|||||||||+.. .||+.||+++|...+.- ....++..|++||++.-+...
T Consensus 241 a~~~~e~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~-k~~~v~T~~ILFI~~GAF~~~-------- 311 (441)
T TIGR00390 241 AIDAVEQSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNT-KYGMVKTDHILFIAAGAFQLA-------- 311 (441)
T ss_pred HHHHHHcCCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeee-cceeEECCceeEEecCCcCCC--------
Confidence 1222 4678999999999842 39999999999877664 445788999999999753210
Q ss_pred cccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHH----HHHHHHHHHHHhcCCCeEeec
Q 003094 695 IGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIA----DIMLKEVFDRLKTKDIELQVT 770 (848)
Q Consensus 695 ~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~----~~~l~~~~~~~~~~~~~l~i~ 770 (848)
. + .-+-|+|.+||..++.+.+|+.+++..|+ ...++++...+...|+++.|+
T Consensus 312 ------k-----p-------------~DlIPEl~GR~Pi~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ft 367 (441)
T TIGR00390 312 ------K-----P-------------SDLIPELQGRFPIRVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFS 367 (441)
T ss_pred ------C-----h-------------hhccHHHhCccceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEe
Confidence 0 0 01469999999999999999999999999 678888888888899999999
Q ss_pred HHHHHHHHHccCC-----CCCCchHHHHHHHHHHHHHHHHHHHccccCCCCEEEEEE
Q 003094 771 ERFRERVVEEGYN-----PSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDV 822 (848)
Q Consensus 771 ~~a~~~l~~~~~~-----~~~g~r~L~~~i~~~l~~~l~~~~l~~~~~~~~~~~v~~ 822 (848)
++++++|++.++. .+.|||.|+..+++++.+..+++ ....+.++.|+.
T Consensus 368 d~Al~~IA~~A~~~N~~~~~iGAR~LrtilE~~l~d~~fe~----p~~~~~~v~I~~ 420 (441)
T TIGR00390 368 DEAIKRIAELAYNVNEKTENIGARRLHTVLERLLEDISFEA----PDLSGQNITIDA 420 (441)
T ss_pred HHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHHhcC----CCCCCCEEEECH
Confidence 9999999998765 68999999999999999888876 223356666643
No 32
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1.3e-21 Score=196.18 Aligned_cols=188 Identities=23% Similarity=0.338 Sum_probs=156.6
Q ss_pred CCCCCccCChHHHHHHHHHhc------------cCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeC
Q 003094 194 GKLDPVVGRQPQIERVVQILG------------RRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDM 261 (848)
Q Consensus 194 ~~ld~iiG~~~~~~~l~~~l~------------~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~ 261 (848)
.+++++-|.+..++.|.+..- +.+-++|||||||||||+.||+++|.+. +..+++++.
T Consensus 130 VkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA----------nSTFFSvSS 199 (439)
T KOG0739|consen 130 VKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA----------NSTFFSVSS 199 (439)
T ss_pred CchhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc----------CCceEEeeh
Confidence 468999999999999888632 3456789999999999999999999987 467889999
Q ss_pred CcccccccccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCCchH---HHHH-HHhhhh----cCCceEEEEeeC
Q 003094 262 GLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAI---DAAN-ILKPSL----ARGELQCIGATT 333 (848)
Q Consensus 262 ~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~~~~---~~~~-~L~~~l----~~~~v~vI~atn 333 (848)
++++ ++|.|+.+..++.+|+-+++..|.|+||||||.++++++.+.+. .+.. +|.+.- +..++.|+++||
T Consensus 200 SDLv--SKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATN 277 (439)
T KOG0739|consen 200 SDLV--SKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATN 277 (439)
T ss_pred HHHH--HHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCC
Confidence 9998 78999999999999999999999999999999999876655432 2222 222221 256799999999
Q ss_pred hHHHHhhhhcChhhhcccC-CCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccC
Q 003094 334 LDEYRKHIEKDPALERRFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDR 402 (848)
Q Consensus 334 ~~~~~~~~~~d~al~~Rf~-~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~ 402 (848)
-+. .+|.+++|||. .|++|.|....|..+++..+. .....+++.++..+++.+.||.+..
T Consensus 278 iPw-----~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG----~tp~~LT~~d~~eL~~kTeGySGsD 338 (439)
T KOG0739|consen 278 IPW-----VLDSAIRRRFEKRIYIPLPEAHARARMFKLHLG----DTPHVLTEQDFKELARKTEGYSGSD 338 (439)
T ss_pred Cch-----hHHHHHHHHhhcceeccCCcHHHhhhhheeccC----CCccccchhhHHHHHhhcCCCCcCc
Confidence 886 69999999997 999999999999999887665 2345678999999999999998873
No 33
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.88 E-value=1.4e-21 Score=212.36 Aligned_cols=228 Identities=20% Similarity=0.249 Sum_probs=180.4
Q ss_pred ccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhcccCC
Q 003094 533 VIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGS 612 (848)
Q Consensus 533 vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~ 612 (848)
++|++.+++.+.+.+.+.... ..++||+|++||||+++|++|+......+.+|+.+||..+.+....+.+||.
T Consensus 1 liG~S~~m~~~~~~~~~~a~~-------~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~ 73 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPL-------DRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGH 73 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCC-------CCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhcc
Confidence 578999999999988877422 2349999999999999999999988777899999999998766666778887
Q ss_pred CCCC-cccccccchhHHHHcCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCchhhhcc
Q 003094 613 PPGY-VGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKG 691 (848)
Q Consensus 613 ~~g~-~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~i~~~ 691 (848)
..|. .|... .-.+.+..+.+++||||||+.+++++|..|+++|+++.+...++......++++|++||.....
T Consensus 74 ~~g~~~ga~~--~~~G~~~~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~---- 147 (329)
T TIGR02974 74 EAGAFTGAQK--RHQGRFERADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPA---- 147 (329)
T ss_pred ccccccCccc--ccCCchhhCCCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHH----
Confidence 5542 22211 1223455677899999999999999999999999999988777766667799999999733211
Q ss_pred CcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCe-EEEcCCCC--HHHHHHHHHHHHHHHHHHHhcCCCeEe
Q 003094 692 GRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDE-MIVFRQLT--KLEVKEIADIMLKEVFDRLKTKDIELQ 768 (848)
Q Consensus 692 ~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~-~i~f~~l~--~~el~~I~~~~l~~~~~~~~~~~~~l~ 768 (848)
..-...|+++|+.||.. .|.++||. .+|+..++++++.++..++.... ...
T Consensus 148 -------------------------~~~~g~fr~dL~~rl~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~-~~~ 201 (329)
T TIGR02974 148 -------------------------LAAEGRFRADLLDRLAFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPL-FPG 201 (329)
T ss_pred -------------------------HhhcCchHHHHHHHhcchhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCC-CCC
Confidence 11123588999999954 69999997 58999999999998776653211 146
Q ss_pred ecHHHHHHHHHccCCCCCCchHHHHHHHHHHHH
Q 003094 769 VTERFRERVVEEGYNPSYGARPLRRAIMRLLED 801 (848)
Q Consensus 769 i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~l~~ 801 (848)
+++++++.|.. |+|++|.|+|+++|++++..
T Consensus 202 ls~~a~~~L~~--y~WPGNvrEL~n~i~~~~~~ 232 (329)
T TIGR02974 202 FTPQAREQLLE--YHWPGNVRELKNVVERSVYR 232 (329)
T ss_pred cCHHHHHHHHh--CCCCchHHHHHHHHHHHHHh
Confidence 99999999999 99999999999999988763
No 34
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1.3e-21 Score=205.65 Aligned_cols=231 Identities=23% Similarity=0.388 Sum_probs=175.0
Q ss_pred eEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhcccCCCCCCcccccccchhHHHH-------cCCC
Q 003094 562 ASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVR-------RRPY 634 (848)
Q Consensus 562 ~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~-------~~~~ 634 (848)
.++||.||+|+|||.||+.||+.+ +.||...||..+.. .||+|++....+...+. ++..
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~l---dVPfaIcDcTtLTQ-----------AGYVGeDVEsvi~KLl~~A~~nVekAQq 292 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVL---DVPFAICDCTTLTQ-----------AGYVGEDVESVIQKLLQEAEYNVEKAQQ 292 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHh---CCCeEEecccchhh-----------cccccccHHHHHHHHHHHccCCHHHHhc
Confidence 379999999999999999999999 89999999999854 48999876655554443 4667
Q ss_pred eEEEEcCCCcCC--------------hHHHHHHHhhhcCcEEEcCC----------CceeecCCeEEEEecCCC--chhh
Q 003094 635 TVVLFDEIEKAH--------------PDVFNMMLQILEDGRLTDSK----------GRTVDFKNTLLIMTSNVG--SSVI 688 (848)
Q Consensus 635 ~Vl~lDEid~l~--------------~~~~~~Ll~~le~g~~~~~~----------g~~v~~~~~iiI~tsN~~--~~~i 688 (848)
+||||||+||+. ..||..||+++|...+.-++ .-.+|.+|++||+..-+. ..+|
T Consensus 293 GIVflDEvDKi~~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I 372 (564)
T KOG0745|consen 293 GIVFLDEVDKITKKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKII 372 (564)
T ss_pred CeEEEehhhhhcccCccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHH
Confidence 899999999984 25999999999976654322 224777888888876542 2233
Q ss_pred hc--cCcccccccCCC--------cccccH------H-HHHHHHHHHHHhh-cChhhhhccCeEEEcCCCCHHHHHHHH-
Q 003094 689 EK--GGRRIGFDLDYD--------EKDSSY------N-RIKSLVTEELKQY-FRPEFLNRLDEMIVFRQLTKLEVKEIA- 749 (848)
Q Consensus 689 ~~--~~~~~~f~~~~~--------~~~~~~------~-~~~~~~~~~l~~~-~~~~ll~R~d~~i~f~~l~~~el~~I~- 749 (848)
.+ ...++||..... +..... + .++..-..+|..+ +-|+|++||..+++|.+|+++++.+|+
T Consensus 373 ~rR~~d~slGFg~~s~~~vr~~~~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfVGRfPVlVplh~L~~~~Lv~VLt 452 (564)
T KOG0745|consen 373 SRRLDDKSLGFGAPSSKGVRANMATKSGVENDAEKRDELLEKVESGDLISFGMIPEFVGRFPVLVPLHSLDEDQLVRVLT 452 (564)
T ss_pred HHhhcchhcccCCCCCccchhhcccccCcchhHHHHHHHHhhccccchhhhcCcHHHhcccceEeeccccCHHHHHHHHh
Confidence 33 235688754311 100100 1 1111112344454 679999999999999999999999999
Q ss_pred ---HHHHHHHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHHHHHHHHHHHH
Q 003094 750 ---DIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSMAEK 806 (848)
Q Consensus 750 ---~~~l~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~l~~~l~~~ 806 (848)
...+.++...|...++++.|+++|++.++..+.....|||.||..+++++.+++++.
T Consensus 453 EPknaL~~Qyk~lf~~~nV~L~fTe~Al~~IAq~Al~r~TGARgLRsIlE~~Lleamfev 512 (564)
T KOG0745|consen 453 EPKNALGKQYKKLFGMDNVELHFTEKALEAIAQLALKRKTGARGLRSILESLLLEAMFEV 512 (564)
T ss_pred cchhhHHHHHHHHhccCCeeEEecHHHHHHHHHHHHhhccchHHHHHHHHHHHhhhcccC
Confidence 556677777778889999999999999999999999999999999999999887754
No 35
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=9.4e-22 Score=204.36 Aligned_cols=197 Identities=24% Similarity=0.338 Sum_probs=155.4
Q ss_pred CCCCCccCChHHHHHHHHHhc------------cCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeC
Q 003094 194 GKLDPVVGRQPQIERVVQILG------------RRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDM 261 (848)
Q Consensus 194 ~~ld~iiG~~~~~~~l~~~l~------------~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~ 261 (848)
-++++|.|..+.++-|.+.+- +.+-+++|++||||||||+||+++|.++ +..++-++.
T Consensus 209 ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc----------~tTFFNVSs 278 (491)
T KOG0738|consen 209 IKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATEC----------GTTFFNVSS 278 (491)
T ss_pred cChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhh----------cCeEEEech
Confidence 478999999999887776532 3566889999999999999999999999 566777776
Q ss_pred CcccccccccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCCchHHHHH----HHhhhhc-------C-CceEEE
Q 003094 262 GLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAAN----ILKPSLA-------R-GELQCI 329 (848)
Q Consensus 262 ~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~----~L~~~l~-------~-~~v~vI 329 (848)
+.+. ++|+|+.|+.++-+|+-++...|.++||||||.|+..+...+..+... -|+-.++ . .-|+|+
T Consensus 279 stlt--SKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVL 356 (491)
T KOG0738|consen 279 STLT--SKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVL 356 (491)
T ss_pred hhhh--hhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEE
Confidence 6666 899999999999999999999999999999999998776665554443 3333332 2 227777
Q ss_pred EeeChHHHHhhhhcChhhhcccC-CCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCChhhH
Q 003094 330 GATTLDEYRKHIEKDPALERRFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKA 408 (848)
Q Consensus 330 ~atn~~~~~~~~~~d~al~~Rf~-~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~p~~a 408 (848)
++||.+. ++|.+|+|||. .|.||.|+.+.|..+++..+..... -++-.++.++..+.+|.++ +.
T Consensus 357 AATN~PW-----diDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~~~-----~~~~~~~~lae~~eGySGa-----DI 421 (491)
T KOG0738|consen 357 AATNFPW-----DIDEALRRRLEKRIYIPLPDAEARSALIKILLRSVEL-----DDPVNLEDLAERSEGYSGA-----DI 421 (491)
T ss_pred eccCCCc-----chHHHHHHHHhhheeeeCCCHHHHHHHHHHhhccccC-----CCCccHHHHHHHhcCCChH-----HH
Confidence 7888775 89999999998 8999999999999999988763221 2333577899999999877 55
Q ss_pred HHHHHHHhh
Q 003094 409 IDLIDEAGS 417 (848)
Q Consensus 409 ~~ll~~a~~ 417 (848)
..++++|..
T Consensus 422 ~nvCreAsm 430 (491)
T KOG0738|consen 422 TNVCREASM 430 (491)
T ss_pred HHHHHHHHH
Confidence 556665543
No 36
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=2.8e-20 Score=208.06 Aligned_cols=259 Identities=23% Similarity=0.356 Sum_probs=202.1
Q ss_pred HHHHHhhCCCCcccCcchHHHHHHHHHHhhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHH
Q 003094 501 HIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKA 580 (848)
Q Consensus 501 ~~~~~~~g~p~~~~~~~~~~~l~~l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~ 580 (848)
..+.-...+|+...+. +..++.+.++.|.++-.|.+.++++|.+.+.-.... ..-+.| -+||+||||+|||++++.
T Consensus 294 nYlDwll~lPW~~~sk-~~~Dl~~a~~iLd~dHYGLekVKeRIlEyLAV~~l~-~~~kGp--ILcLVGPPGVGKTSLgkS 369 (782)
T COG0466 294 NYLDWLLDLPWGKRSK-DKLDLKKAEKILDKDHYGLEKVKERILEYLAVQKLT-KKLKGP--ILCLVGPPGVGKTSLGKS 369 (782)
T ss_pred HHHHHHHhCCCccccc-hhhhHHHHHHHhcccccCchhHHHHHHHHHHHHHHh-ccCCCc--EEEEECCCCCCchhHHHH
Confidence 3344455667665443 456788899999999999999999999988655432 111223 488999999999999999
Q ss_pred HHHHhcCCCCceEEecccccccccchhcccCCCCCCcccccccchhHHHHcCC--CeEEEEcCCCcCChH----HHHHHH
Q 003094 581 LAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRP--YTVVLFDEIEKAHPD----VFNMML 654 (848)
Q Consensus 581 la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~--~~Vl~lDEid~l~~~----~~~~Ll 654 (848)
||+.+ +..|+++.++.+. +.+++-|+...|+|.-.++ +...++++. +.|++||||||++.+ -..+||
T Consensus 370 IA~al---~RkfvR~sLGGvr---DEAEIRGHRRTYIGamPGr-IiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALL 442 (782)
T COG0466 370 IAKAL---GRKFVRISLGGVR---DEAEIRGHRRTYIGAMPGK-IIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALL 442 (782)
T ss_pred HHHHh---CCCEEEEecCccc---cHHHhccccccccccCChH-HHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHH
Confidence 99999 7899999988874 4677888888899986644 445555433 569999999999764 557888
Q ss_pred hhhcC---cEEEcCC-CceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhc
Q 003094 655 QILED---GRLTDSK-GRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNR 730 (848)
Q Consensus 655 ~~le~---g~~~~~~-g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R 730 (848)
.+||- ..|.|.. .-.+|.++++||+|+|.-. .++.+|++|
T Consensus 443 EVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~------------------------------------tIP~PLlDR 486 (782)
T COG0466 443 EVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLD------------------------------------TIPAPLLDR 486 (782)
T ss_pred hhcCHhhcCchhhccccCccchhheEEEeecCccc------------------------------------cCChHHhcc
Confidence 88874 4455433 5568889999999999433 267899999
Q ss_pred cCeEEEcCCCCHHHHHHHHHHHHH-HHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 003094 731 LDEMIVFRQLTKLEVKEIADIMLK-EVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSMAEKML 808 (848)
Q Consensus 731 ~d~~i~f~~l~~~el~~I~~~~l~-~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~l~~~l~~~~l 808 (848)
+ ++|.+..|+++|..+|++.+|- +..+.-.....++.|+++++..|.++ |....|.|.|+|.|..+++....+.+.
T Consensus 487 M-EiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~-YTREAGVR~LeR~i~ki~RK~~~~i~~ 563 (782)
T COG0466 487 M-EVIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRY-YTREAGVRNLEREIAKICRKAAKKILL 563 (782)
T ss_pred e-eeeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHHHH-HhHhhhhhHHHHHHHHHHHHHHHHHHh
Confidence 9 9999999999999999976663 43433344445789999999999986 999999999999999999988887755
No 37
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.3e-21 Score=209.93 Aligned_cols=203 Identities=24% Similarity=0.330 Sum_probs=160.4
Q ss_pred CCCCCccCChHHHHHH---HHHhc---------cCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeC
Q 003094 194 GKLDPVVGRQPQIERV---VQILG---------RRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDM 261 (848)
Q Consensus 194 ~~ld~iiG~~~~~~~l---~~~l~---------~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~ 261 (848)
.+|+++.|.|+.+.+| ++.|. .+-++++||+||||||||.||+++|.+. +.++++...
T Consensus 301 v~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA----------~VPFF~~sG 370 (752)
T KOG0734|consen 301 VTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA----------GVPFFYASG 370 (752)
T ss_pred cccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc----------CCCeEeccc
Confidence 4699999999766654 44444 3567899999999999999999999876 677888888
Q ss_pred CcccccccccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCCchH---HHHHHHhhhhc----CCceEEEEeeCh
Q 003094 262 GLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAI---DAANILKPSLA----RGELQCIGATTL 334 (848)
Q Consensus 262 ~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~~~~---~~~~~L~~~l~----~~~v~vI~atn~ 334 (848)
+.+. -.++|.-..+++.+|..+++..|||+||||+|.+-+.+...... ...|.|+..|+ +.+++||++||.
T Consensus 371 SEFd--Em~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNf 448 (752)
T KOG0734|consen 371 SEFD--EMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNF 448 (752)
T ss_pred cchh--hhhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCC
Confidence 7776 56888889999999999999999999999999997766555432 34555555554 567999999999
Q ss_pred HHHHhhhhcChhhhc--ccC-CCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCChhhHHHH
Q 003094 335 DEYRKHIEKDPALER--RFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDL 411 (848)
Q Consensus 335 ~~~~~~~~~d~al~~--Rf~-~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~p~~a~~l 411 (848)
++ .+|++|.| ||+ .|.+|.|+..-|.+||+.++.+......+ ++..+++-+.||.+. +...+
T Consensus 449 pe-----~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~V-----D~~iiARGT~GFsGA-----dLaNl 513 (752)
T KOG0734|consen 449 PE-----ALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDV-----DPKIIARGTPGFSGA-----DLANL 513 (752)
T ss_pred hh-----hhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCC-----CHhHhccCCCCCchH-----HHHHH
Confidence 99 79999999 998 89999999999999999988854322222 355677777777655 66677
Q ss_pred HHHHhhHHHHhh
Q 003094 412 IDEAGSRVRLRH 423 (848)
Q Consensus 412 l~~a~~~~~~~~ 423 (848)
+..|.-.+....
T Consensus 514 VNqAAlkAa~dg 525 (752)
T KOG0734|consen 514 VNQAALKAAVDG 525 (752)
T ss_pred HHHHHHHHHhcC
Confidence 777766655543
No 38
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.87 E-value=1.9e-21 Score=204.63 Aligned_cols=198 Identities=26% Similarity=0.355 Sum_probs=159.4
Q ss_pred hhhhhhhcCCCCCccCChHHHH---HHHHHhccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCC
Q 003094 186 NLTKLAEEGKLDPVVGRQPQIE---RVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMG 262 (848)
Q Consensus 186 ~l~~~~~~~~ld~iiG~~~~~~---~l~~~l~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~ 262 (848)
+|..+.||.++|+++||+..+. -|...+......+++|||||||||||+|+.||+.. +..+..++.
T Consensus 13 PLA~rmRP~~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~----------~~~f~~~sA- 81 (436)
T COG2256 13 PLAERLRPKSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTT----------NAAFEALSA- 81 (436)
T ss_pred ChHHHhCCCCHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhh----------CCceEEecc-
Confidence 7999999999999999998774 57778888999999999999999999999999988 556766653
Q ss_pred cccccccccchHHHHHHHHHHHHHh----CCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCCceEEEEeeChHHHH
Q 003094 263 LLVAGTKYRGEFEERLKKLMEEIKQ----SDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATTLDEYR 338 (848)
Q Consensus 263 ~l~~~~~~~g~~~~~l~~l~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~atn~~~~~ 338 (848)
..++. +.++.+++++++ +...||||||||++.+. .++.|++.+|+|.+++||+||..++
T Consensus 82 -v~~gv-------kdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~--------QQD~lLp~vE~G~iilIGATTENPs- 144 (436)
T COG2256 82 -VTSGV-------KDLREIIEEARKNRLLGRRTILFLDEIHRFNKA--------QQDALLPHVENGTIILIGATTENPS- 144 (436)
T ss_pred -ccccH-------HHHHHHHHHHHHHHhcCCceEEEEehhhhcChh--------hhhhhhhhhcCCeEEEEeccCCCCC-
Confidence 22222 357777777753 34689999999999654 7899999999999999999998875
Q ss_pred hhhhcChhhhcccCCCcCCCCCHHHHHHHHHHHHHHHh---hhhcCCCChHHHHHHHhhhhcccccCCChhhHHHHHHHH
Q 003094 339 KHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYE---IHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEA 415 (848)
Q Consensus 339 ~~~~~d~al~~Rf~~i~~~~p~~~e~~~Il~~~~~~~~---~~~~~~~s~~~l~~l~~~s~~~~~~~~~p~~a~~ll~~a 415 (848)
+.++++|+||+.++++.+.+.++..++++..+.... ....+.++++++..++..+.|... .+..+|+.+
T Consensus 145 --F~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R------~aLN~LE~~ 216 (436)
T COG2256 145 --FELNPALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDAR------RALNLLELA 216 (436)
T ss_pred --eeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHH------HHHHHHHHH
Confidence 699999999999999999999999999998433221 112234789999999999888643 366666666
Q ss_pred hhHH
Q 003094 416 GSRV 419 (848)
Q Consensus 416 ~~~~ 419 (848)
...+
T Consensus 217 ~~~~ 220 (436)
T COG2256 217 ALSA 220 (436)
T ss_pred HHhc
Confidence 5433
No 39
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.86 E-value=4.3e-20 Score=208.69 Aligned_cols=188 Identities=19% Similarity=0.267 Sum_probs=150.8
Q ss_pred CCCCCccCChHHHHHHHHH----------hccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCc
Q 003094 194 GKLDPVVGRQPQIERVVQI----------LGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGL 263 (848)
Q Consensus 194 ~~ld~iiG~~~~~~~l~~~----------l~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~ 263 (848)
.+++++.|.+..++.+.+. .+.+.++++||+||||||||++|+++|+++ +.+++.++++.
T Consensus 225 ~~~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~----------~~~~~~l~~~~ 294 (489)
T CHL00195 225 EKISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW----------QLPLLRLDVGK 294 (489)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh----------CCCEEEEEhHH
Confidence 4688899998887766542 234677899999999999999999999998 67799999988
Q ss_pred ccccccccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCC----chHHHHHHHhhhhc--CCceEEEEeeChHHH
Q 003094 264 LVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAE----GAIDAANILKPSLA--RGELQCIGATTLDEY 337 (848)
Q Consensus 264 l~~~~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~----~~~~~~~~L~~~l~--~~~v~vI~atn~~~~ 337 (848)
+. .++.|+.+.+++.+|..++...|+||||||+|.++...... ....+...+...+. ...++||+|||.++
T Consensus 295 l~--~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~- 371 (489)
T CHL00195 295 LF--GGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNID- 371 (489)
T ss_pred hc--ccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChh-
Confidence 87 45889999999999999999999999999999998642222 12234445555554 45689999999998
Q ss_pred HhhhhcChhhhc--ccC-CCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhccccc
Q 003094 338 RKHIEKDPALER--RFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISD 401 (848)
Q Consensus 338 ~~~~~~d~al~~--Rf~-~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~ 401 (848)
.+|+++.| ||+ .+.|+.|+.++|.+||+.++.+.. .....+..+..++..+.||.+.
T Consensus 372 ----~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~---~~~~~~~dl~~La~~T~GfSGA 431 (489)
T CHL00195 372 ----LLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFR---PKSWKKYDIKKLSKLSNKFSGA 431 (489)
T ss_pred ----hCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcC---CCcccccCHHHHHhhcCCCCHH
Confidence 69999998 997 889999999999999999988632 1123455688899999988765
No 40
>CHL00181 cbbX CbbX; Provisional
Probab=99.86 E-value=2e-20 Score=199.22 Aligned_cols=224 Identities=20% Similarity=0.320 Sum_probs=159.1
Q ss_pred HHHHHHHHhhccccChHHHHHHHHHHHHH-------HHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcC----CC
Q 003094 521 RLLKMEETLHKRVIGQDEAVKAISRAIRR-------ARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFG----SE 589 (848)
Q Consensus 521 ~l~~l~~~l~~~vigq~~~~~~l~~~~~~-------~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~----~~ 589 (848)
.+..+.+.|+.+++|++.++++|.+.+.. ...|+..|. +..+++|+||||||||++|+++|+.++. ..
T Consensus 13 ~~~~~~~~l~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~-~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~ 91 (287)
T CHL00181 13 QIQEVLDILDEELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSN-PGLHMSFTGSPGTGKTTVALKMADILYKLGYIKK 91 (287)
T ss_pred CHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCC-CCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 45677888999999999999988776532 234555543 3346999999999999999999998753 23
Q ss_pred CceEEecccccccccchhcccCCCCCCcccccccchhHHHHcCCCeEEEEcCCCcC---------ChHHHHHHHhhhcCc
Q 003094 590 EAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKA---------HPDVFNMMLQILEDG 660 (848)
Q Consensus 590 ~~~i~i~~~~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l---------~~~~~~~Ll~~le~g 660 (848)
.+++.++.+.+... |+|... ....+.+.++.++||||||++.+ .+++++.|++.|+++
T Consensus 92 ~~~~~v~~~~l~~~------------~~g~~~-~~~~~~l~~a~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~ 158 (287)
T CHL00181 92 GHLLTVTRDDLVGQ------------YIGHTA-PKTKEVLKKAMGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQ 158 (287)
T ss_pred CceEEecHHHHHHH------------Hhccch-HHHHHHHHHccCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcC
Confidence 35777765554221 444433 23456677778899999999986 567999999999874
Q ss_pred EEEcCCCceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCC
Q 003094 661 RLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQL 740 (848)
Q Consensus 661 ~~~~~~g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l 740 (848)
. .+++||++++... .+.+. ..+|+|.+||+.+|.|+||
T Consensus 159 ~-----------~~~~vI~ag~~~~------------------------------~~~~~-~~np~L~sR~~~~i~F~~~ 196 (287)
T CHL00181 159 R-----------DDLVVIFAGYKDR------------------------------MDKFY-ESNPGLSSRIANHVDFPDY 196 (287)
T ss_pred C-----------CCEEEEEeCCcHH------------------------------HHHHH-hcCHHHHHhCCceEEcCCc
Confidence 3 5678888875111 00111 2469999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCeEeecHHHH----HHHHHccCC-CCCCchHHHHHHHHHHHHHHHHHHHc
Q 003094 741 TKLEVKEIADIMLKEVFDRLKTKDIELQVTERFR----ERVVEEGYN-PSYGARPLRRAIMRLLEDSMAEKMLA 809 (848)
Q Consensus 741 ~~~el~~I~~~~l~~~~~~~~~~~~~l~i~~~a~----~~l~~~~~~-~~~g~r~L~~~i~~~l~~~l~~~~l~ 809 (848)
+.+++.+|+..++.+.. ..+++++. +++...++. +..|+|.+++++++++...-.+.+-.
T Consensus 197 t~~el~~I~~~~l~~~~---------~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~~~~~~r~~~~ 261 (287)
T CHL00181 197 TPEELLQIAKIMLEEQQ---------YQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRARMRQANRIFES 261 (287)
T ss_pred CHHHHHHHHHHHHHHhc---------CCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999998742 22455544 444444443 44559999999998888776666443
No 41
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.86 E-value=2.9e-21 Score=191.39 Aligned_cols=190 Identities=24% Similarity=0.336 Sum_probs=132.6
Q ss_pred hhhhhhhhcCCCCCccCChHHHHHHHHHhc-----cCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEE
Q 003094 185 TNLTKLAEEGKLDPVVGRQPQIERVVQILG-----RRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITL 259 (848)
Q Consensus 185 ~~l~~~~~~~~ld~iiG~~~~~~~l~~~l~-----~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~ 259 (848)
.++.+..||.+|++++||++.++.+.-.+. .....|+|||||||+||||+|+.+|+++ +.++..+
T Consensus 12 ~~l~~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~----------~~~~~~~ 81 (233)
T PF05496_consen 12 APLAERLRPKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANEL----------GVNFKIT 81 (233)
T ss_dssp S-HHHHTS-SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHC----------T--EEEE
T ss_pred hhhHHhcCCCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhcc----------CCCeEec
Confidence 468889999999999999999998655443 2346789999999999999999999999 5567666
Q ss_pred eCCcccccccccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCCc--------------
Q 003094 260 DMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGE-------------- 325 (848)
Q Consensus 260 ~~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~~-------------- 325 (848)
+...+.. .++ +..++..+.. +-||||||||+|.+ ..++.|.+.+|.+.
T Consensus 82 sg~~i~k----~~d----l~~il~~l~~--~~ILFIDEIHRlnk--------~~qe~LlpamEd~~idiiiG~g~~ar~~ 143 (233)
T PF05496_consen 82 SGPAIEK----AGD----LAAILTNLKE--GDILFIDEIHRLNK--------AQQEILLPAMEDGKIDIIIGKGPNARSI 143 (233)
T ss_dssp ECCC--S----CHH----HHHHHHT--T--T-EEEECTCCC--H--------HHHHHHHHHHHCSEEEEEBSSSSS-BEE
T ss_pred cchhhhh----HHH----HHHHHHhcCC--CcEEEEechhhccH--------HHHHHHHHHhccCeEEEEecccccccee
Confidence 5533221 122 3334444443 44999999999954 48899999998543
Q ss_pred ------eEEEEeeChHHHHhhhhcChhhhcccCC-CcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcc
Q 003094 326 ------LQCIGATTLDEYRKHIEKDPALERRFQP-VKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQY 398 (848)
Q Consensus 326 ------v~vI~atn~~~~~~~~~~d~al~~Rf~~-i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~ 398 (848)
+.+||+||... .+++.|++||.. ..+..++.++..+|++.... ..++.++++....++..+.|.
T Consensus 144 ~~~l~~FTligATTr~g-----~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~----~l~i~i~~~~~~~Ia~rsrGt 214 (233)
T PF05496_consen 144 RINLPPFTLIGATTRAG-----LLSSPLRDRFGIVLRLEFYSEEELAKIVKRSAR----ILNIEIDEDAAEEIARRSRGT 214 (233)
T ss_dssp EEE----EEEEEESSGC-----CTSHCCCTTSSEEEE----THHHHHHHHHHCCH----CTT-EE-HHHHHHHHHCTTTS
T ss_pred eccCCCceEeeeecccc-----ccchhHHhhcceecchhcCCHHHHHHHHHHHHH----HhCCCcCHHHHHHHHHhcCCC
Confidence 68899999987 689999999985 57999999999999987665 467888999999999987664
Q ss_pred cccCCChhhHHHHHHHHhh
Q 003094 399 ISDRFLPDKAIDLIDEAGS 417 (848)
Q Consensus 399 ~~~~~~p~~a~~ll~~a~~ 417 (848)
|+-|..+|+.+..
T Consensus 215 ------PRiAnrll~rvrD 227 (233)
T PF05496_consen 215 ------PRIANRLLRRVRD 227 (233)
T ss_dssp ------HHHHHHHHHHHCC
T ss_pred ------hHHHHHHHHHHHH
Confidence 7889999887643
No 42
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.86 E-value=1.7e-20 Score=204.31 Aligned_cols=230 Identities=20% Similarity=0.248 Sum_probs=179.4
Q ss_pred hccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhcc
Q 003094 530 HKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 609 (848)
Q Consensus 530 ~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l 609 (848)
++.++|.+..+..+.+.+.+.... ..++|++|++||||+++|++|+......+.+|+.+||..+.+......+
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a~~-------~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~~~l 77 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLAPL-------DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSEL 77 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHhCC-------CCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHHHHH
Confidence 457899999999999999877422 1349999999999999999999887667889999999998765445678
Q ss_pred cCCCCCC-cccccccchhHHHHcCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCchhh
Q 003094 610 IGSPPGY-VGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVI 688 (848)
Q Consensus 610 ~g~~~g~-~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~i 688 (848)
||...+. .|... .-.+.+..+.+++||||||+.+++.+|..|+++++++.+...++......+++||+||+......
T Consensus 78 fg~~~~~~~g~~~--~~~g~l~~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~l~~l 155 (326)
T PRK11608 78 FGHEAGAFTGAQK--RHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAM 155 (326)
T ss_pred ccccccccCCccc--ccCCchhccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchhHHHH
Confidence 8875432 22211 11234566778999999999999999999999999999887666555556899999997432211
Q ss_pred hccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCe-EEEcCCCCH--HHHHHHHHHHHHHHHHHHhcCCC
Q 003094 689 EKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDE-MIVFRQLTK--LEVKEIADIMLKEVFDRLKTKDI 765 (848)
Q Consensus 689 ~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~-~i~f~~l~~--~el~~I~~~~l~~~~~~~~~~~~ 765 (848)
.-...|+++|+.||.. .|.++||.+ +|+..++++++.++..++....
T Consensus 156 -----------------------------~~~g~f~~dL~~~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~- 205 (326)
T PRK11608 156 -----------------------------VAEGKFRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPL- 205 (326)
T ss_pred -----------------------------HHcCCchHHHHHhcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCC-
Confidence 1123588999999944 699999965 8999999999998766553211
Q ss_pred eEeecHHHHHHHHHccCCCCCCchHHHHHHHHHHH
Q 003094 766 ELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLE 800 (848)
Q Consensus 766 ~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~l~ 800 (848)
...+++++++.|.. |+|++|.|+|++++++++.
T Consensus 206 ~~~~s~~al~~L~~--y~WPGNvrEL~~vl~~a~~ 238 (326)
T PRK11608 206 FPGFTERARETLLN--YRWPGNIRELKNVVERSVY 238 (326)
T ss_pred CCCCCHHHHHHHHh--CCCCcHHHHHHHHHHHHHH
Confidence 13689999999999 9999999999999998876
No 43
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=2e-20 Score=209.12 Aligned_cols=198 Identities=23% Similarity=0.357 Sum_probs=154.2
Q ss_pred CCCCCccCChHHHHHHHHHhcc------------CCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeC
Q 003094 194 GKLDPVVGRQPQIERVVQILGR------------RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDM 261 (848)
Q Consensus 194 ~~ld~iiG~~~~~~~l~~~l~~------------~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~ 261 (848)
.++||+-|.++.+..|.+.+.- +++.+||||||||||||.+|+++|.++ ...++++..
T Consensus 669 V~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEc----------sL~FlSVKG 738 (953)
T KOG0736|consen 669 VSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATEC----------SLNFLSVKG 738 (953)
T ss_pred cchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhc----------eeeEEeecC
Confidence 4799999999999999887643 457899999999999999999999998 456778877
Q ss_pred CcccccccccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCCch-----HHHHHHHhhhhc------CCceEEEE
Q 003094 262 GLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGA-----IDAANILKPSLA------RGELQCIG 330 (848)
Q Consensus 262 ~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~~~-----~~~~~~L~~~l~------~~~v~vI~ 330 (848)
-.+. .+|+|+.|++++++|+++++..|||+|+||+|.+.+.+...++ ..++..|+..++ ...++|||
T Consensus 739 PELL--NMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViG 816 (953)
T KOG0736|consen 739 PELL--NMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIG 816 (953)
T ss_pred HHHH--HHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEe
Confidence 7777 6799999999999999999999999999999999987654432 246666666664 35699999
Q ss_pred eeChHHHHhhhhcChhhhc--ccC-CCcCCCC-CHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCChh
Q 003094 331 ATTLDEYRKHIEKDPALER--RFQ-PVKVPEP-SVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPD 406 (848)
Q Consensus 331 atn~~~~~~~~~~d~al~~--Rf~-~i~~~~p-~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~p~ 406 (848)
+||+++ -+||+|+| ||+ .+++.++ +.+....+|+.+.+++.....++ +..+++.+.-. +..+
T Consensus 817 ATNRPD-----LLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVd-----L~eiAk~cp~~----~TGA 882 (953)
T KOG0736|consen 817 ATNRPD-----LLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVD-----LVEIAKKCPPN----MTGA 882 (953)
T ss_pred cCCCcc-----ccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcC-----HHHHHhhCCcC----Cchh
Confidence 999999 59999999 998 6777766 55677889999988765444333 45555544332 2234
Q ss_pred hHHHHHHHHhh
Q 003094 407 KAIDLIDEAGS 417 (848)
Q Consensus 407 ~a~~ll~~a~~ 417 (848)
+...++..|.-
T Consensus 883 DlYsLCSdA~l 893 (953)
T KOG0736|consen 883 DLYSLCSDAML 893 (953)
T ss_pred HHHHHHHHHHH
Confidence 55566655543
No 44
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.85 E-value=1.4e-20 Score=214.67 Aligned_cols=227 Identities=19% Similarity=0.241 Sum_probs=177.9
Q ss_pred hccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHH--------hcCCCCceEEecccccc
Q 003094 530 HKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAY--------YFGSEEAMIRLDMSEFM 601 (848)
Q Consensus 530 ~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~--------l~~~~~~~i~i~~~~~~ 601 (848)
+++++|++.+++.+.+.+...... ..++|++|++||||+.+|++|++. ..+.+.||+.+||+.+.
T Consensus 218 f~~iiG~S~~m~~~~~~i~~~A~s-------~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~ 290 (538)
T PRK15424 218 LGDLLGQSPQMEQVRQTILLYARS-------SAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIA 290 (538)
T ss_pred hhheeeCCHHHHHHHHHHHHHhCC-------CCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCC
Confidence 456999999999999998866322 235999999999999999999998 55678899999999998
Q ss_pred cccchhcccCCCCCC-cccccccchhHHHHcCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecCCeEEEEe
Q 003094 602 ERHTVSKLIGSPPGY-VGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMT 680 (848)
Q Consensus 602 ~~~~~~~l~g~~~g~-~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~t 680 (848)
+....+.|||...|. .|... +.-.+.+..+.+++||||||+.+++..|..|+++|+++.+...++......++++|++
T Consensus 291 e~lleseLFG~~~gaftga~~-~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~r~G~~~~~~~dvRiIaa 369 (538)
T PRK15424 291 ESLLEAELFGYEEGAFTGSRR-GGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISA 369 (538)
T ss_pred hhhHHHHhcCCccccccCccc-cccCCchhccCCCEEEEcChHhCCHHHHHHHHhhhhcCeEEecCCCceeccceEEEEe
Confidence 777778899976553 23211 1112345567889999999999999999999999999999887777666779999999
Q ss_pred cCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCe-EEEcCCCCH--HHHHHHHHHHHHHHH
Q 003094 681 SNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDE-MIVFRQLTK--LEVKEIADIMLKEVF 757 (848)
Q Consensus 681 sN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~-~i~f~~l~~--~el~~I~~~~l~~~~ 757 (848)
||...... .-...|+++|+.|+.. .|.+|||.+ +|+..++.+++.++.
T Consensus 370 t~~~L~~~-----------------------------v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~ 420 (538)
T PRK15424 370 THCDLEED-----------------------------VRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSL 420 (538)
T ss_pred cCCCHHHH-----------------------------HhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHH
Confidence 98433211 1123588999999965 589999965 899999999998875
Q ss_pred HHHhcCCCeEeecHHHH-------HHHHHccCCCCCCchHHHHHHHHHHH
Q 003094 758 DRLKTKDIELQVTERFR-------ERVVEEGYNPSYGARPLRRAIMRLLE 800 (848)
Q Consensus 758 ~~~~~~~~~l~i~~~a~-------~~l~~~~~~~~~g~r~L~~~i~~~l~ 800 (848)
..+. . .++++++ +.|.. |+|++|.|+|++.+++++.
T Consensus 421 ~~~~---~--~~~~~a~~~~~~a~~~L~~--y~WPGNvREL~nvier~~i 463 (538)
T PRK15424 421 AALS---A--PFSAALRQGLQQCETLLLH--YDWPGNVRELRNLMERLAL 463 (538)
T ss_pred HHcC---C--CCCHHHHHhhHHHHHHHHh--CCCCchHHHHHHHHHHHHH
Confidence 5442 2 2566555 56666 9999999999999998876
No 45
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.85 E-value=1.1e-20 Score=220.45 Aligned_cols=229 Identities=18% Similarity=0.259 Sum_probs=183.1
Q ss_pred hhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhc
Q 003094 529 LHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSK 608 (848)
Q Consensus 529 l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~ 608 (848)
.++.++|++.+++.+.+.++..... ..++||+|++||||+++|++||....+.+.+|+.+||..+.+....+.
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a~~-------~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~~~~~~ 266 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVARS-------NSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETLLESE 266 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHhCc-------CCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHHHHHHH
Confidence 4568999999999999999876421 234999999999999999999999877789999999999877666678
Q ss_pred ccCCCCCC-cccccccchhHHHHcCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCchh
Q 003094 609 LIGSPPGY-VGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSV 687 (848)
Q Consensus 609 l~g~~~g~-~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~ 687 (848)
|||...|. .|... .-.+.+..+.+++||||||+.+++.+|..|+++++++.+...++......++++|++|+.....
T Consensus 267 lfg~~~~~~~~~~~--~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~~l~~ 344 (534)
T TIGR01817 267 LFGHEKGAFTGAIA--QRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRDLEE 344 (534)
T ss_pred HcCCCCCccCCCCc--CCCCcccccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCCCHHH
Confidence 88876543 22211 1122344567899999999999999999999999999988766665556789999999743321
Q ss_pred hhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCe-EEEcCCCC--HHHHHHHHHHHHHHHHHHHhcCC
Q 003094 688 IEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDE-MIVFRQLT--KLEVKEIADIMLKEVFDRLKTKD 764 (848)
Q Consensus 688 i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~-~i~f~~l~--~~el~~I~~~~l~~~~~~~~~~~ 764 (848)
.+ -...|+++|++|++. .|.++||. .+|+..++++++.++..++.
T Consensus 345 --------------------------~~---~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~--- 392 (534)
T TIGR01817 345 --------------------------AV---AKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENG--- 392 (534)
T ss_pred --------------------------HH---HcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcC---
Confidence 11 134589999999965 58999997 58999999999998876553
Q ss_pred CeEeecHHHHHHHHHccCCCCCCchHHHHHHHHHHH
Q 003094 765 IELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLE 800 (848)
Q Consensus 765 ~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~l~ 800 (848)
..+.+++++++.|.. |+|++|.|+|+++|++++.
T Consensus 393 ~~~~~s~~a~~~L~~--~~WPGNvrEL~~v~~~a~~ 426 (534)
T TIGR01817 393 RPLTITPSAIRVLMS--CKWPGNVRELENCLERTAT 426 (534)
T ss_pred CCCCCCHHHHHHHHh--CCCCChHHHHHHHHHHHHH
Confidence 335799999999999 9999999999999998875
No 46
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.85 E-value=4e-20 Score=197.23 Aligned_cols=221 Identities=21% Similarity=0.312 Sum_probs=161.3
Q ss_pred HHHHHHHHhhccccChHHHHHHHHHHHHH-------HHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCC----C
Q 003094 521 RLLKMEETLHKRVIGQDEAVKAISRAIRR-------ARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGS----E 589 (848)
Q Consensus 521 ~l~~l~~~l~~~vigq~~~~~~l~~~~~~-------~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~----~ 589 (848)
.+.++.+.+..+++|+++++++|.+.+.. .+.|+.. ..|..+++|+||||||||++|+++|+.+... .
T Consensus 12 ~~~~~~~~l~~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~-~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~ 90 (284)
T TIGR02880 12 GITEVLDQLDRELIGLKPVKTRIREIAALLLVERLRQRLGLAS-AAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRK 90 (284)
T ss_pred cHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCc-CCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCccc
Confidence 35566677788899999999988775432 2234443 3344579999999999999999999887432 2
Q ss_pred CceEEecccccccccchhcccCCCCCCcccccccchhHHHHcCCCeEEEEcCCCcC---------ChHHHHHHHhhhcCc
Q 003094 590 EAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKA---------HPDVFNMMLQILEDG 660 (848)
Q Consensus 590 ~~~i~i~~~~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l---------~~~~~~~Ll~~le~g 660 (848)
.+++.++++++.. . |.|.+. ..+.+.+.++.++||||||++.+ +.++++.|++.|+++
T Consensus 91 ~~~v~v~~~~l~~-----~-------~~g~~~-~~~~~~~~~a~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~ 157 (284)
T TIGR02880 91 GHLVSVTRDDLVG-----Q-------YIGHTA-PKTKEILKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQ 157 (284)
T ss_pred ceEEEecHHHHhH-----h-------hcccch-HHHHHHHHHccCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcC
Confidence 4688887655422 2 344332 23456677777899999999977 356899999999874
Q ss_pred EEEcCCCceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCC
Q 003094 661 RLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQL 740 (848)
Q Consensus 661 ~~~~~~g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l 740 (848)
. .++++|++++... . +..-.++|+|.+||+..|.|++|
T Consensus 158 ~-----------~~~~vI~a~~~~~------------------------------~-~~~~~~np~L~sR~~~~i~fp~l 195 (284)
T TIGR02880 158 R-----------DDLVVILAGYKDR------------------------------M-DSFFESNPGFSSRVAHHVDFPDY 195 (284)
T ss_pred C-----------CCEEEEEeCCcHH------------------------------H-HHHHhhCHHHHhhCCcEEEeCCc
Confidence 3 5678888875210 0 01112579999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCeEeecHHHHHHHHHc-----cCCCCCCchHHHHHHHHHHHHHHHHH
Q 003094 741 TKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEE-----GYNPSYGARPLRRAIMRLLEDSMAEK 806 (848)
Q Consensus 741 ~~~el~~I~~~~l~~~~~~~~~~~~~l~i~~~a~~~l~~~-----~~~~~~g~r~L~~~i~~~l~~~l~~~ 806 (848)
+.+|+.+|+..++.+.. ..+++++.+.+.++ ..+|+.|+|++++.+++++...-.+.
T Consensus 196 ~~edl~~I~~~~l~~~~---------~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~~~~~r~ 257 (284)
T TIGR02880 196 SEAELLVIAGLMLKEQQ---------YRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRARLRQANRL 257 (284)
T ss_pred CHHHHHHHHHHHHHHhc---------cccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988732 34678888877763 23899999999999998877665554
No 47
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.85 E-value=1.8e-20 Score=214.27 Aligned_cols=230 Identities=17% Similarity=0.212 Sum_probs=182.1
Q ss_pred hhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhc
Q 003094 529 LHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSK 608 (848)
Q Consensus 529 l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~ 608 (848)
-++.++|++.+++.+.+.++..... ..++|+.|++||||+.+|++|++...+.+.||+.+||..+.+....+.
T Consensus 210 ~f~~iiG~S~~m~~~~~~i~~~A~~-------~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~llese 282 (526)
T TIGR02329 210 RLDDLLGASAPMEQVRALVRLYARS-------DATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESLLEAE 282 (526)
T ss_pred chhheeeCCHHHHHHHHHHHHHhCC-------CCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhHHHHH
Confidence 3557999999999999999766322 235999999999999999999998877889999999999987766778
Q ss_pred ccCCCCCCcccccccchhHHHHcCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCchhh
Q 003094 609 LIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVI 688 (848)
Q Consensus 609 l~g~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~i 688 (848)
|||...|.......+.-.+.+..+.+++||||||+.+++.+|..|+++|+++.+...++......++++|++||......
T Consensus 283 LFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~~r~g~~~~~~~dvRiIaat~~~l~~~ 362 (526)
T TIGR02329 283 LFGYEEGAFTGARRGGRTGLIEAAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHCALTTA 362 (526)
T ss_pred hcCCcccccccccccccccchhhcCCceEEecChHhCCHHHHHHHHHHHhcCcEEecCCCceeeecceEEeccCCCHHHH
Confidence 99976553221111112344556778999999999999999999999999999887776666667899999998443211
Q ss_pred hccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCe-EEEcCCCCH--HHHHHHHHHHHHHHHHHHhcCCC
Q 003094 689 EKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDE-MIVFRQLTK--LEVKEIADIMLKEVFDRLKTKDI 765 (848)
Q Consensus 689 ~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~-~i~f~~l~~--~el~~I~~~~l~~~~~~~~~~~~ 765 (848)
.-...|+++|+.|++. .|.+|||.+ +|+..++.+++.++.... +
T Consensus 363 -----------------------------v~~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~---~- 409 (526)
T TIGR02329 363 -----------------------------VQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAAL---R- 409 (526)
T ss_pred -----------------------------hhhcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHc---C-
Confidence 1123588999999964 599999966 899999999999876544 2
Q ss_pred eEeecHHHHHH-------HHHccCCCCCCchHHHHHHHHHHHH
Q 003094 766 ELQVTERFRER-------VVEEGYNPSYGARPLRRAIMRLLED 801 (848)
Q Consensus 766 ~l~i~~~a~~~-------l~~~~~~~~~g~r~L~~~i~~~l~~ 801 (848)
+.+++++++. |.. |+|++|.|+|++++++++..
T Consensus 410 -~~~~~~a~~~~~~~~~~L~~--y~WPGNvrEL~nvier~~i~ 449 (526)
T TIGR02329 410 -LPDSEAAAQVLAGVADPLQR--YPWPGNVRELRNLVERLALE 449 (526)
T ss_pred -CCCCHHHHHHhHHHHHHHHh--CCCCchHHHHHHHHHHHHHh
Confidence 2488999888 777 99999999999999988763
No 48
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.84 E-value=1.4e-20 Score=203.72 Aligned_cols=230 Identities=18% Similarity=0.284 Sum_probs=183.8
Q ss_pred HHhhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcC-CCCceEEecccccccccc
Q 003094 527 ETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFG-SEEAMIRLDMSEFMERHT 605 (848)
Q Consensus 527 ~~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~-~~~~~i~i~~~~~~~~~~ 605 (848)
...+..+||.+...+.+.+.++... |.. .++|+.|++||||+.+|+.||...-+ .+.|||.+||+.+.+..-
T Consensus 74 ~~~~~~LIG~~~~~~~~~eqik~~a-----p~~--~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~ 146 (403)
T COG1221 74 SEALDDLIGESPSLQELREQIKAYA-----PSG--LPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQ 146 (403)
T ss_pred chhhhhhhccCHHHHHHHHHHHhhC-----CCC--CcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCHH
Confidence 3456789999999999998888731 111 34999999999999999999977666 689999999999999888
Q ss_pred hhcccCCCCC-CcccccccchhHHHHcCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCC
Q 003094 606 VSKLIGSPPG-YVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVG 684 (848)
Q Consensus 606 ~~~l~g~~~g-~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~ 684 (848)
.+.|||...| +.|. . +.-.+.+..+.+|+||+|||..+|++.|..|+++||+|.++..++......++++|++||..
T Consensus 147 ~~eLFG~~kGaftGa-~-~~k~Glfe~A~GGtLfLDEI~~LP~~~Q~kLl~~le~g~~~rvG~~~~~~~dVRli~AT~~~ 224 (403)
T COG1221 147 EAELFGHEKGAFTGA-Q-GGKAGLFEQANGGTLFLDEIHRLPPEGQEKLLRVLEEGEYRRVGGSQPRPVDVRLICATTED 224 (403)
T ss_pred HHHHhccccceeecc-c-CCcCchheecCCCEEehhhhhhCCHhHHHHHHHHHHcCceEecCCCCCcCCCceeeeccccC
Confidence 8889998766 4452 2 22245677888999999999999999999999999999999988888888899999999843
Q ss_pred chhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcC--hhhhh-ccCeEEEcCCCCH--HHHHHHHHHHHHHHHHH
Q 003094 685 SSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFR--PEFLN-RLDEMIVFRQLTK--LEVKEIADIMLKEVFDR 759 (848)
Q Consensus 685 ~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~ll~-R~d~~i~f~~l~~--~el~~I~~~~l~~~~~~ 759 (848)
.. +.+. .+|.. ++..+|..|||.+ +|+..+++.++..+..+
T Consensus 225 l~----------------------------------~~~~~g~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~ 270 (403)
T COG1221 225 LE----------------------------------EAVLAGADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARR 270 (403)
T ss_pred HH----------------------------------HHHHhhcchhhhhcCceecCCChhhchhhHHHHHHHHHHHHHHH
Confidence 22 1122 36777 5566799999966 77888888888887776
Q ss_pred HhcCCCeEe-ecHHHHHHHHHccCCCCCCchHHHHHHHHHHHHHHH
Q 003094 760 LKTKDIELQ-VTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSMA 804 (848)
Q Consensus 760 ~~~~~~~l~-i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~l~~~l~ 804 (848)
+. ..+. .+++++..|.. |+|++|.|+|++.|++++.....
T Consensus 271 l~---~~~~~~~~~a~~~L~~--y~~pGNirELkN~Ve~~~~~~~~ 311 (403)
T COG1221 271 LG---LPLSVDSPEALRALLA--YDWPGNIRELKNLVERAVAQASG 311 (403)
T ss_pred cC---CCCCCCCHHHHHHHHh--CCCCCcHHHHHHHHHHHHHHhcc
Confidence 63 3332 34699999998 99999999999999988875543
No 49
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.84 E-value=4.6e-20 Score=182.95 Aligned_cols=189 Identities=17% Similarity=0.312 Sum_probs=125.1
Q ss_pred HHHHHHHHhhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEeccccc
Q 003094 521 RLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEF 600 (848)
Q Consensus 521 ~l~~l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~ 600 (848)
.-..+++...++++||++.+..+.-.++..+.. +.++.|++||||||+|||++|+.||+.+ +.+|...+.+.+
T Consensus 14 l~~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r----~~~l~h~lf~GPPG~GKTTLA~IIA~e~---~~~~~~~sg~~i 86 (233)
T PF05496_consen 14 LAERLRPKSLDEFIGQEHLKGNLKILIRAAKKR----GEALDHMLFYGPPGLGKTTLARIIANEL---GVNFKITSGPAI 86 (233)
T ss_dssp HHHHTS-SSCCCS-S-HHHHHHHHHHHHHHHCT----TS---EEEEESSTTSSHHHHHHHHHHHC---T--EEEEECCC-
T ss_pred hHHhcCCCCHHHccCcHHHHhhhHHHHHHHHhc----CCCcceEEEECCCccchhHHHHHHHhcc---CCCeEeccchhh
Confidence 345677888999999999999988888776432 3456789999999999999999999998 566655444322
Q ss_pred ccccchhcccCCCCCCcccccccchhHHHHc-CCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEc--CCC-----ceeec
Q 003094 601 MERHTVSKLIGSPPGYVGYTEGGQLTEAVRR-RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTD--SKG-----RTVDF 672 (848)
Q Consensus 601 ~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~-~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~--~~g-----~~v~~ 672 (848)
.. .+.+...+.. .++.||||||||++++.+|+.|+.+||+|.+.- +.| .+++.
T Consensus 87 ~k-------------------~~dl~~il~~l~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l 147 (233)
T PF05496_consen 87 EK-------------------AGDLAAILTNLKEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINL 147 (233)
T ss_dssp -S-------------------CHHHHHHHHT--TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE-
T ss_pred hh-------------------HHHHHHHHHhcCCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccC
Confidence 11 1223333332 356799999999999999999999999999753 222 34555
Q ss_pred CCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHHHH
Q 003094 673 KNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIM 752 (848)
Q Consensus 673 ~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~~~ 752 (848)
+++.+|.+|+... .++++|++||..+..+..|+.+|+.+|+.+.
T Consensus 148 ~~FTligATTr~g------------------------------------~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~ 191 (233)
T PF05496_consen 148 PPFTLIGATTRAG------------------------------------LLSSPLRDRFGIVLRLEFYSEEELAKIVKRS 191 (233)
T ss_dssp ---EEEEEESSGC------------------------------------CTSHCCCTTSSEEEE----THHHHHHHHHHC
T ss_pred CCceEeeeecccc------------------------------------ccchhHHhhcceecchhcCCHHHHHHHHHHH
Confidence 6778888775221 3678999999777899999999999999644
Q ss_pred HHHHHHHHhcCCCeEeecHHHHHHHHHc
Q 003094 753 LKEVFDRLKTKDIELQVTERFRERVVEE 780 (848)
Q Consensus 753 l~~~~~~~~~~~~~l~i~~~a~~~l~~~ 780 (848)
... ..+.+++++..+|+..
T Consensus 192 a~~---------l~i~i~~~~~~~Ia~r 210 (233)
T PF05496_consen 192 ARI---------LNIEIDEDAAEEIARR 210 (233)
T ss_dssp CHC---------TT-EE-HHHHHHHHHC
T ss_pred HHH---------hCCCcCHHHHHHHHHh
Confidence 432 4567999999999985
No 50
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.84 E-value=6.4e-20 Score=212.08 Aligned_cols=230 Identities=20% Similarity=0.236 Sum_probs=182.7
Q ss_pred hccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhcc
Q 003094 530 HKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 609 (848)
Q Consensus 530 ~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l 609 (848)
...++|++..++.+.+.++..... ..++||+|++||||+.+|++|+......+.+|+.+||..+.+....+.|
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~~-------~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~e~~l 258 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAAS-------DLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLAESEL 258 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhCC-------CCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHHHHHh
Confidence 457999999999999999876322 2349999999999999999999998777899999999998766556678
Q ss_pred cCCCCCC-cccccccchhHHHHcCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCchhh
Q 003094 610 IGSPPGY-VGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVI 688 (848)
Q Consensus 610 ~g~~~g~-~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~i 688 (848)
||...|. .|... .-.+.+..+.+++||||||+.+++++|..|+++++++.+...++......++++|++||......
T Consensus 259 fG~~~g~~~ga~~--~~~g~~~~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~ 336 (509)
T PRK05022 259 FGHVKGAFTGAIS--NRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRDLREE 336 (509)
T ss_pred cCccccccCCCcc--cCCcchhhcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCCCHHHH
Confidence 8875442 22211 11223456778999999999999999999999999999877666655667899999998433211
Q ss_pred hccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeE-EEcCCCCH--HHHHHHHHHHHHHHHHHHhcCCC
Q 003094 689 EKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEM-IVFRQLTK--LEVKEIADIMLKEVFDRLKTKDI 765 (848)
Q Consensus 689 ~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~-i~f~~l~~--~el~~I~~~~l~~~~~~~~~~~~ 765 (848)
.-...|+++|+.|+..+ |.+|||.+ +|+..++++++.++..++.. .
T Consensus 337 -----------------------------~~~~~f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~--~ 385 (509)
T PRK05022 337 -----------------------------VRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGL--R 385 (509)
T ss_pred -----------------------------HHcCCccHHHHhcccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCC--C
Confidence 11235889999999654 99999965 79999999999998766533 2
Q ss_pred eEeecHHHHHHHHHccCCCCCCchHHHHHHHHHHHH
Q 003094 766 ELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLED 801 (848)
Q Consensus 766 ~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~l~~ 801 (848)
.+.+++++++.|.. |+|++|.|+|+++|++++..
T Consensus 386 ~~~~s~~a~~~L~~--y~WPGNvrEL~~~i~ra~~~ 419 (509)
T PRK05022 386 SLRLSPAAQAALLA--YDWPGNVRELEHVISRAALL 419 (509)
T ss_pred CCCCCHHHHHHHHh--CCCCCcHHHHHHHHHHHHHh
Confidence 34699999999999 99999999999999988764
No 51
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=2.6e-19 Score=175.50 Aligned_cols=189 Identities=23% Similarity=0.347 Sum_probs=149.5
Q ss_pred hhhhcCCCCCccCChHHHHHHHHH-------------hccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCce
Q 003094 189 KLAEEGKLDPVVGRQPQIERVVQI-------------LGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKK 255 (848)
Q Consensus 189 ~~~~~~~ld~iiG~~~~~~~l~~~-------------l~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~ 255 (848)
++....+.+=+-|.+++++++.+. |+...+.++|||||||+|||.+|+++|+.- .+.
T Consensus 139 eKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht----------~c~ 208 (404)
T KOG0728|consen 139 EKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT----------DCT 208 (404)
T ss_pred hhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc----------ceE
Confidence 333334445566778887766554 456778999999999999999999999976 677
Q ss_pred EEEEeCCcccccccccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCC---CCCchHHHHHHHhhhhc-------CCc
Q 003094 256 VITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAG---AAEGAIDAANILKPSLA-------RGE 325 (848)
Q Consensus 256 v~~~~~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~---~~~~~~~~~~~L~~~l~-------~~~ 325 (848)
++.++.+.+. .+|.|+-...++.+|--++...|.|+|+||||.+-.++ +..++.+++..++.++. ..+
T Consensus 209 firvsgselv--qk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatkn 286 (404)
T KOG0728|consen 209 FIRVSGSELV--QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKN 286 (404)
T ss_pred EEEechHHHH--HHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccc
Confidence 8889988888 78999999999999999999999999999999996543 23346666666665553 567
Q ss_pred eEEEEeeChHHHHhhhhcChhhhc--ccC-CCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhccc
Q 003094 326 LQCIGATTLDEYRKHIEKDPALER--RFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYI 399 (848)
Q Consensus 326 v~vI~atn~~~~~~~~~~d~al~~--Rf~-~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~ 399 (848)
+.+|.+||+.+ -+||+++| |.+ .|+||+|+.+.|.+||+.+..++....++. +..++....+..
T Consensus 287 ikvimatnrid-----ild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~-----l~kiaekm~gas 353 (404)
T KOG0728|consen 287 IKVIMATNRID-----ILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGIN-----LRKIAEKMPGAS 353 (404)
T ss_pred eEEEEeccccc-----cccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccC-----HHHHHHhCCCCc
Confidence 99999999999 48999999 886 899999999999999999888776665554 444555444443
No 52
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.82 E-value=2.1e-19 Score=200.46 Aligned_cols=199 Identities=27% Similarity=0.368 Sum_probs=155.0
Q ss_pred CCCCCccCChHHHHHHHHHhc-------------cCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEe
Q 003094 194 GKLDPVVGRQPQIERVVQILG-------------RRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLD 260 (848)
Q Consensus 194 ~~ld~iiG~~~~~~~l~~~l~-------------~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~ 260 (848)
..++++.|.++++++|.+.+. ..+++++||+||||||||++|+++|+.+ +.+++.++
T Consensus 128 ~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~----------~~~~i~v~ 197 (389)
T PRK03992 128 VTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET----------NATFIRVV 197 (389)
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh----------CCCEEEee
Confidence 357789999999998877542 3567899999999999999999999988 45688888
Q ss_pred CCcccccccccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCC---chHHHHHHHhhhh---c----CCceEEEE
Q 003094 261 MGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAE---GAIDAANILKPSL---A----RGELQCIG 330 (848)
Q Consensus 261 ~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~---~~~~~~~~L~~~l---~----~~~v~vI~ 330 (848)
++.+. .+|.|+.+..++.+|..+....|+||||||+|.+++.+... +..+....+..++ + .+++.||+
T Consensus 198 ~~~l~--~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~ 275 (389)
T PRK03992 198 GSELV--QKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIA 275 (389)
T ss_pred hHHHh--HhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEE
Confidence 88876 56788888999999999998889999999999998654322 2233444444443 2 35799999
Q ss_pred eeChHHHHhhhhcChhhhc--ccC-CCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCChhh
Q 003094 331 ATTLDEYRKHIEKDPALER--RFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDK 407 (848)
Q Consensus 331 atn~~~~~~~~~~d~al~~--Rf~-~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~p~~ 407 (848)
|||.++ .+|+++.| ||+ .|+|+.|+.++|.+||+.++.+.... .+..+..++..+.+|.+. +
T Consensus 276 aTn~~~-----~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~-----~~~~~~~la~~t~g~sga-----d 340 (389)
T PRK03992 276 ATNRID-----ILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLA-----DDVDLEELAELTEGASGA-----D 340 (389)
T ss_pred ecCChh-----hCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCC-----CcCCHHHHHHHcCCCCHH-----H
Confidence 999987 68999998 997 89999999999999999877643211 123467788888777544 6
Q ss_pred HHHHHHHHhhHH
Q 003094 408 AIDLIDEAGSRV 419 (848)
Q Consensus 408 a~~ll~~a~~~~ 419 (848)
...++.+|+..+
T Consensus 341 l~~l~~eA~~~a 352 (389)
T PRK03992 341 LKAICTEAGMFA 352 (389)
T ss_pred HHHHHHHHHHHH
Confidence 777888877654
No 53
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.82 E-value=2.2e-19 Score=207.47 Aligned_cols=230 Identities=19% Similarity=0.289 Sum_probs=180.7
Q ss_pred hhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhc
Q 003094 529 LHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSK 608 (848)
Q Consensus 529 l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~ 608 (848)
-++.++|.+.++..+.+.+++.... . .++||+|++||||+++|++++........+|+.+||+.+.+....+.
T Consensus 202 ~f~~~ig~s~~~~~~~~~~~~~A~~-~------~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~~~~e~e 274 (520)
T PRK10820 202 AFSQIVAVSPKMRQVVEQARKLAML-D------APLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDVVESE 274 (520)
T ss_pred cccceeECCHHHHHHHHHHHHHhCC-C------CCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCHHHHHHH
Confidence 4568999999999998888765322 1 24999999999999999999998877789999999999887666678
Q ss_pred ccCCCCC-CcccccccchhHHHHcCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCchh
Q 003094 609 LIGSPPG-YVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSV 687 (848)
Q Consensus 609 l~g~~~g-~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~ 687 (848)
|||..+| +.|..++ -.+.+..+.+++||||||+.+++..|..|+++++++.+...++......+++||++|+.....
T Consensus 275 lFG~~~~~~~~~~~~--~~g~~e~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~l~~ 352 (520)
T PRK10820 275 LFGHAPGAYPNALEG--KKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVE 352 (520)
T ss_pred hcCCCCCCcCCcccC--CCChhhhcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCCHHH
Confidence 8987654 2222211 123455677899999999999999999999999999887766655556788999998743321
Q ss_pred hhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCe-EEEcCCCCH--HHHHHHHHHHHHHHHHHHhcCC
Q 003094 688 IEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDE-MIVFRQLTK--LEVKEIADIMLKEVFDRLKTKD 764 (848)
Q Consensus 688 i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~-~i~f~~l~~--~el~~I~~~~l~~~~~~~~~~~ 764 (848)
.. -...|+++|+.|+.. .|.+|||.+ +|+..+++.++.++..+....
T Consensus 353 l~-----------------------------~~g~f~~dL~~rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~- 402 (520)
T PRK10820 353 LV-----------------------------QKGEFREDLYYRLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVP- 402 (520)
T ss_pred HH-----------------------------HcCCccHHHHhhcCeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCC-
Confidence 10 123488999999854 599999966 789999999999887655322
Q ss_pred CeEeecHHHHHHHHHccCCCCCCchHHHHHHHHHHH
Q 003094 765 IELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLE 800 (848)
Q Consensus 765 ~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~l~ 800 (848)
...+++++++.|.. |+|++|.|+|++++++++.
T Consensus 403 -~~~ls~~a~~~L~~--y~WPGNvreL~nvl~~a~~ 435 (520)
T PRK10820 403 -RPKLAADLNTVLTR--YGWPGNVRQLKNAIYRALT 435 (520)
T ss_pred -CCCcCHHHHHHHhc--CCCCCHHHHHHHHHHHHHH
Confidence 23589999999998 9999999999999998876
No 54
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=1.6e-19 Score=199.97 Aligned_cols=194 Identities=26% Similarity=0.348 Sum_probs=161.1
Q ss_pred CCCCccCChHHHHHHHHHhcc-------------CCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeC
Q 003094 195 KLDPVVGRQPQIERVVQILGR-------------RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDM 261 (848)
Q Consensus 195 ~ld~iiG~~~~~~~l~~~l~~-------------~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~ 261 (848)
.++++-|..++++.|.+.+.. +-+.+||||||||||||.+|.++|... +.+++.+..
T Consensus 665 ~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~----------~~~fisvKG 734 (952)
T KOG0735|consen 665 RWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNS----------NLRFISVKG 734 (952)
T ss_pred CceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhC----------CeeEEEecC
Confidence 578888998888877777653 345789999999999999999999987 567888887
Q ss_pred CcccccccccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCC--c-hHHHHHHHhhhhcC----CceEEEEeeCh
Q 003094 262 GLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAE--G-AIDAANILKPSLAR----GELQCIGATTL 334 (848)
Q Consensus 262 ~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~--~-~~~~~~~L~~~l~~----~~v~vI~atn~ 334 (848)
-.+. .+|.|..|+.++.+|.+++.+.|||||+||+|.+.+.+... | ...+.|.|+..|+. .++.|+++|++
T Consensus 735 PElL--~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsR 812 (952)
T KOG0735|consen 735 PELL--SKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSR 812 (952)
T ss_pred HHHH--HHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCC
Confidence 7777 78999999999999999999999999999999999876443 2 45688888887763 46999999999
Q ss_pred HHHHhhhhcChhhhc--ccC-CCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCChhhHHHH
Q 003094 335 DEYRKHIEKDPALER--RFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDL 411 (848)
Q Consensus 335 ~~~~~~~~~d~al~~--Rf~-~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~p~~a~~l 411 (848)
++ .+||+|+| |++ .|..+.|+..+|.+|++.+..+... -++-+++.++..+++|.+. +...+
T Consensus 813 pd-----liDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~-----~~~vdl~~~a~~T~g~tgA-----Dlq~l 877 (952)
T KOG0735|consen 813 PD-----LIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLK-----DTDVDLECLAQKTDGFTGA-----DLQSL 877 (952)
T ss_pred cc-----ccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCC-----ccccchHHHhhhcCCCchh-----hHHHH
Confidence 99 58999999 997 7899999999999999998874322 2455788999999999876 45555
Q ss_pred HHHH
Q 003094 412 IDEA 415 (848)
Q Consensus 412 l~~a 415 (848)
+-.|
T Consensus 878 l~~A 881 (952)
T KOG0735|consen 878 LYNA 881 (952)
T ss_pred HHHH
Confidence 5554
No 55
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.81 E-value=4.2e-19 Score=196.74 Aligned_cols=200 Identities=22% Similarity=0.292 Sum_probs=153.3
Q ss_pred CCCCCccCChHHHHHHHHHhc-------------cCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEe
Q 003094 194 GKLDPVVGRQPQIERVVQILG-------------RRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLD 260 (848)
Q Consensus 194 ~~ld~iiG~~~~~~~l~~~l~-------------~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~ 260 (848)
.+++++.|.+.+++++.+.+. ..+++++||+||||||||++|+++|+.+ +..++.+.
T Consensus 142 v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l----------~~~fi~i~ 211 (398)
T PTZ00454 142 VTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT----------TATFIRVV 211 (398)
T ss_pred CCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc----------CCCEEEEe
Confidence 468899999999988776542 3567899999999999999999999987 45677777
Q ss_pred CCcccccccccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCC---CchHHHHHHHhhhh---c----CCceEEEE
Q 003094 261 MGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAA---EGAIDAANILKPSL---A----RGELQCIG 330 (848)
Q Consensus 261 ~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~---~~~~~~~~~L~~~l---~----~~~v~vI~ 330 (848)
.+.+. .++.|+.+..++.+|..++...|+||||||+|.++..+.+ .........+..++ + ..++.+|+
T Consensus 212 ~s~l~--~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~ 289 (398)
T PTZ00454 212 GSEFV--QKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIM 289 (398)
T ss_pred hHHHH--HHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEE
Confidence 76665 5678888899999999999999999999999999865421 12233333333333 2 35789999
Q ss_pred eeChHHHHhhhhcChhhhc--ccC-CCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCChhh
Q 003094 331 ATTLDEYRKHIEKDPALER--RFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDK 407 (848)
Q Consensus 331 atn~~~~~~~~~~d~al~~--Rf~-~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~p~~ 407 (848)
+||.++ .+||++.| ||+ .|+|+.|+.++|.+||+.+..++. +. .+-.+..++..+.+|.+ .+
T Consensus 290 aTN~~d-----~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~----l~-~dvd~~~la~~t~g~sg-----aD 354 (398)
T PTZ00454 290 ATNRAD-----TLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMN----LS-EEVDLEDFVSRPEKISA-----AD 354 (398)
T ss_pred ecCCch-----hCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCC----CC-cccCHHHHHHHcCCCCH-----HH
Confidence 999988 69999998 997 899999999999999998877532 21 22346677887777654 46
Q ss_pred HHHHHHHHhhHHH
Q 003094 408 AIDLIDEAGSRVR 420 (848)
Q Consensus 408 a~~ll~~a~~~~~ 420 (848)
...++.+|...+-
T Consensus 355 I~~l~~eA~~~A~ 367 (398)
T PTZ00454 355 IAAICQEAGMQAV 367 (398)
T ss_pred HHHHHHHHHHHHH
Confidence 7778888765543
No 56
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.81 E-value=2.9e-19 Score=213.20 Aligned_cols=226 Identities=17% Similarity=0.235 Sum_probs=180.0
Q ss_pred hccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhcc
Q 003094 530 HKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 609 (848)
Q Consensus 530 ~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l 609 (848)
+..++|.+.++..+.+.++..... ..++||+|++||||+++|++|++.....+.+|+.+||..+......+.|
T Consensus 324 ~~~l~g~s~~~~~~~~~~~~~a~~-------~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~~~~~el 396 (638)
T PRK11388 324 FDHMPQDSPQMRRLIHFGRQAAKS-------SFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEALAEEF 396 (638)
T ss_pred ccceEECCHHHHHHHHHHHHHhCc-------CCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChHHHHHHh
Confidence 567899999999998888776422 1349999999999999999999998777899999999999776666788
Q ss_pred cCCCCCCcccccccchhHHHHcCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCchhhh
Q 003094 610 IGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIE 689 (848)
Q Consensus 610 ~g~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~i~ 689 (848)
+|...+ ... ....+.+..+.+++||||||+.+++++|..|+++++++.++..++......++++|+|||......
T Consensus 397 fg~~~~---~~~-~~~~g~~~~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~~l~~~- 471 (638)
T PRK11388 397 LGSDRT---DSE-NGRLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTADLAML- 471 (638)
T ss_pred cCCCCc---Ccc-CCCCCceeECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccCCHHHH-
Confidence 886422 111 111233456778999999999999999999999999999887777665566889999998433211
Q ss_pred ccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCe-EEEcCCCCH--HHHHHHHHHHHHHHHHHHhcCCCe
Q 003094 690 KGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDE-MIVFRQLTK--LEVKEIADIMLKEVFDRLKTKDIE 766 (848)
Q Consensus 690 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~-~i~f~~l~~--~el~~I~~~~l~~~~~~~~~~~~~ 766 (848)
+ -...|+++|+.|+.. .|.+|||.+ +|+..+++.++.++..++ +..
T Consensus 472 -------------------------~---~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~---~~~ 520 (638)
T PRK11388 472 -------------------------V---EQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRF---STR 520 (638)
T ss_pred -------------------------H---hcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHh---CCC
Confidence 1 114588999999965 489999966 799999999999877655 333
Q ss_pred EeecHHHHHHHHHccCCCCCCchHHHHHHHHHHH
Q 003094 767 LQVTERFRERVVEEGYNPSYGARPLRRAIMRLLE 800 (848)
Q Consensus 767 l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~l~ 800 (848)
+.+++++++.|.. |+|++|.|+|+++|++++.
T Consensus 521 ~~~s~~a~~~L~~--y~WPGNvreL~~~l~~~~~ 552 (638)
T PRK11388 521 LKIDDDALARLVS--YRWPGNDFELRSVIENLAL 552 (638)
T ss_pred CCcCHHHHHHHHc--CCCCChHHHHHHHHHHHHH
Confidence 5699999999999 9999999999999998765
No 57
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.81 E-value=6.2e-19 Score=186.84 Aligned_cols=214 Identities=24% Similarity=0.368 Sum_probs=152.4
Q ss_pred cccChHHHHHHHHHHHHHH-------HccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcC----CCCceEEeccccc
Q 003094 532 RVIGQDEAVKAISRAIRRA-------RVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFG----SEEAMIRLDMSEF 600 (848)
Q Consensus 532 ~vigq~~~~~~l~~~~~~~-------~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~----~~~~~i~i~~~~~ 600 (848)
.++|++.++++|....... ..|+..+.. ..+++|+||||||||++|+++|+.++. ...+++.++++.+
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~-~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l 85 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQ-VLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADL 85 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC-cceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHh
Confidence 4899999998887655332 344444333 356999999999999999999998742 2345666666654
Q ss_pred ccccchhcccCCCCCCcccccccchhHHHHcCCCeEEEEcCCCcCC--------hHHHHHHHhhhcCcEEEcCCCceeec
Q 003094 601 MERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAH--------PDVFNMMLQILEDGRLTDSKGRTVDF 672 (848)
Q Consensus 601 ~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~--------~~~~~~Ll~~le~g~~~~~~g~~v~~ 672 (848)
. +. |+|... ..+.+.+.++.++||||||+|.+. .+.++.|++.|+++.
T Consensus 86 ~---------~~---~~g~~~-~~~~~~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~----------- 141 (261)
T TIGR02881 86 V---------GE---YIGHTA-QKTREVIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNR----------- 141 (261)
T ss_pred h---------hh---hccchH-HHHHHHHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccC-----------
Confidence 3 22 444432 344566777778999999999875 468899999998743
Q ss_pred CCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHHHH
Q 003094 673 KNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIM 752 (848)
Q Consensus 673 ~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~~~ 752 (848)
.++++|++++.... + ....++|+|.+||+..|.|++|+.+++.+|+..+
T Consensus 142 ~~~~vila~~~~~~------------------------------~-~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~ 190 (261)
T TIGR02881 142 NEFVLILAGYSDEM------------------------------D-YFLSLNPGLRSRFPISIDFPDYTVEELMEIAERM 190 (261)
T ss_pred CCEEEEecCCcchh------------------------------H-HHHhcChHHHhccceEEEECCCCHHHHHHHHHHH
Confidence 45677777541110 0 0012579999999889999999999999999888
Q ss_pred HHHHHHHHhcCCCeEeecHHHHHHHHHc-------cCCCCCCchHHHHHHHHHHHHHHHHHHHcc
Q 003094 753 LKEVFDRLKTKDIELQVTERFRERVVEE-------GYNPSYGARPLRRAIMRLLEDSMAEKMLAR 810 (848)
Q Consensus 753 l~~~~~~~~~~~~~l~i~~~a~~~l~~~-------~~~~~~g~r~L~~~i~~~l~~~l~~~~l~~ 810 (848)
+.. ....++++++.+|.+. .-....++|.+++.++.++.+...+.+-.+
T Consensus 191 ~~~---------~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e~a~~~~~~r~~~~~ 246 (261)
T TIGR02881 191 VKE---------REYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNIIEKAIRRQAVRLLDKS 246 (261)
T ss_pred HHH---------cCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhccC
Confidence 755 2345889999888653 123357789999999998888866664443
No 58
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=99.81 E-value=7e-19 Score=180.96 Aligned_cols=225 Identities=22% Similarity=0.333 Sum_probs=183.7
Q ss_pred hccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhcc
Q 003094 530 HKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 609 (848)
Q Consensus 530 ~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l 609 (848)
++.+++++..++.+....++... +. .++|+.|++||||..+|++.+....+...||+.+||..+.+....+++
T Consensus 203 F~~~v~~S~~mk~~v~qA~k~Am-lD------APLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~~aEsEl 275 (511)
T COG3283 203 FEQIVAVSPKMKHVVEQAQKLAM-LD------APLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPEDAAESEL 275 (511)
T ss_pred hHHHhhccHHHHHHHHHHHHhhc-cC------CCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCchhHhHHHH
Confidence 45688888888887776665422 22 248999999999999999999998888999999999999999999999
Q ss_pred cCCCCCCcccccccchhHHHHcCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCchhhh
Q 003094 610 IGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIE 689 (848)
Q Consensus 610 ~g~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~i~ 689 (848)
||..+|-.|+ .+++..+.++.+|+|||..++|..|..|++++.+|.|...++..-.+.++++|++|...-..+
T Consensus 276 FG~apg~~gk------~GffE~AngGTVlLDeIgEmSp~lQaKLLRFL~DGtFRRVGee~Ev~vdVRVIcatq~nL~~l- 348 (511)
T COG3283 276 FGHAPGDEGK------KGFFEQANGGTVLLDEIGEMSPRLQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQVNLVEL- 348 (511)
T ss_pred hcCCCCCCCc------cchhhhccCCeEEeehhhhcCHHHHHHHHHHhcCCceeecCCcceEEEEEEEEecccccHHHH-
Confidence 9998774333 244566788999999999999999999999999999999888777788999999996332211
Q ss_pred ccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCe-EEEcCCCCH--HHHHHHHHHHHHHHHHHHhcCCCe
Q 003094 690 KGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDE-MIVFRQLTK--LEVKEIADIMLKEVFDRLKTKDIE 766 (848)
Q Consensus 690 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~-~i~f~~l~~--~el~~I~~~~l~~~~~~~~~~~~~ 766 (848)
+ -+..|+.+|+.|+.. .+..+||.+ +|+.-+++.++.++.+++... .
T Consensus 349 -------------------------v---~~g~fReDLfyRLNVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p--~ 398 (511)
T COG3283 349 -------------------------V---QKGKFREDLFYRLNVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVP--R 398 (511)
T ss_pred -------------------------H---hcCchHHHHHHHhheeeecCCccccCcccchHHHHHHHHHHHHHhCCC--C
Confidence 1 123588999999954 378889865 789999999999988877443 3
Q ss_pred EeecHHHHHHHHHccCCCCCCchHHHHHHHHHHH
Q 003094 767 LQVTERFRERVVEEGYNPSYGARPLRRAIMRLLE 800 (848)
Q Consensus 767 l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~l~ 800 (848)
.+++++++.+|.. |.|++|.|+|+++|-+.+.
T Consensus 399 pkl~~~~~~~L~~--y~WpGNVRqL~N~iyRA~s 430 (511)
T COG3283 399 PKLAADLLTVLTR--YAWPGNVRQLKNAIYRALT 430 (511)
T ss_pred CccCHHHHHHHHH--cCCCccHHHHHHHHHHHHH
Confidence 4589999999999 9999999999888887665
No 59
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.81 E-value=2.3e-19 Score=189.11 Aligned_cols=179 Identities=22% Similarity=0.376 Sum_probs=131.5
Q ss_pred HHHHHHhhccccChHHHH---HHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccc
Q 003094 523 LKMEETLHKRVIGQDEAV---KAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSE 599 (848)
Q Consensus 523 ~~l~~~l~~~vigq~~~~---~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~ 599 (848)
..+++.-.++++||++.+ ..|.+++.. +.+.+++||||||||||++|++||... +.+|..++...
T Consensus 16 ~rmRP~~lde~vGQ~HLlg~~~~lrr~v~~---------~~l~SmIl~GPPG~GKTTlA~liA~~~---~~~f~~~sAv~ 83 (436)
T COG2256 16 ERLRPKSLDEVVGQEHLLGEGKPLRRAVEA---------GHLHSMILWGPPGTGKTTLARLIAGTT---NAAFEALSAVT 83 (436)
T ss_pred HHhCCCCHHHhcChHhhhCCCchHHHHHhc---------CCCceeEEECCCCCCHHHHHHHHHHhh---CCceEEecccc
Confidence 355666678899999988 345555552 234579999999999999999999987 67787766433
Q ss_pred cccccchhcccCCCCCCcccccccchhHHHHc----CCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecCCe
Q 003094 600 FMERHTVSKLIGSPPGYVGYTEGGQLTEAVRR----RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNT 675 (848)
Q Consensus 600 ~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~----~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~ 675 (848)
. |..+.+.+++..++ ....|||+|||+.++...|+.||..||+|.+.
T Consensus 84 ~-----------------gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE~G~ii------------ 134 (436)
T COG2256 84 S-----------------GVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVENGTII------------ 134 (436)
T ss_pred c-----------------cHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhhhhhhhhhcCCeEE------------
Confidence 2 22222334443322 23579999999999999999999999998744
Q ss_pred EEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHHHHHHH
Q 003094 676 LLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKE 755 (848)
Q Consensus 676 iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~~~l~~ 755 (848)
+|.+|. ++.+|. ++++|++|+ .++.|.||+.+|+.+++.+.+..
T Consensus 135 -lIGATT---------------------ENPsF~-------------ln~ALlSR~-~vf~lk~L~~~di~~~l~ra~~~ 178 (436)
T COG2256 135 -LIGATT---------------------ENPSFE-------------LNPALLSRA-RVFELKPLSSEDIKKLLKRALLD 178 (436)
T ss_pred -EEeccC---------------------CCCCee-------------ecHHHhhhh-heeeeecCCHHHHHHHHHHHHhh
Confidence 666653 122222 679999999 99999999999999999886655
Q ss_pred HHHHHhcCCCeEeecHHHHHHHHHc
Q 003094 756 VFDRLKTKDIELQVTERFRERVVEE 780 (848)
Q Consensus 756 ~~~~~~~~~~~l~i~~~a~~~l~~~ 780 (848)
....+. +..+.++++++++|+..
T Consensus 179 ~~rgl~--~~~~~i~~~a~~~l~~~ 201 (436)
T COG2256 179 EERGLG--GQIIVLDEEALDYLVRL 201 (436)
T ss_pred hhcCCC--cccccCCHHHHHHHHHh
Confidence 443332 34455899999999983
No 60
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.80 E-value=3.4e-19 Score=176.02 Aligned_cols=207 Identities=22% Similarity=0.351 Sum_probs=150.1
Q ss_pred HHHHhhccccChHHHHHHHHHHHHHH---H-ccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEeccccc
Q 003094 525 MEETLHKRVIGQDEAVKAISRAIRRA---R-VGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEF 600 (848)
Q Consensus 525 l~~~l~~~vigq~~~~~~l~~~~~~~---~-~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~ 600 (848)
..+...++|+||++++..-+-.++.. . .+-..| .++|||||||||||++|+++|+.. +.||+.++..++
T Consensus 115 ~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAP----knVLFyGppGTGKTm~Akalane~---kvp~l~vkat~l 187 (368)
T COG1223 115 ISDITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAP----KNVLFYGPPGTGKTMMAKALANEA---KVPLLLVKATEL 187 (368)
T ss_pred hccccHhhhhchHHHHHHHHHHHHHhhChHHhcccCc----ceeEEECCCCccHHHHHHHHhccc---CCceEEechHHH
Confidence 33455788999999987544433322 1 222222 259999999999999999999886 889998887766
Q ss_pred ccccchhcccCCCCCCcccccc--cchhHHHHcCCCeEEEEcCCCcCCh------------HHHHHHHhhhcCcEEEcCC
Q 003094 601 MERHTVSKLIGSPPGYVGYTEG--GQLTEAVRRRPYTVVLFDEIEKAHP------------DVFNMMLQILEDGRLTDSK 666 (848)
Q Consensus 601 ~~~~~~~~l~g~~~g~~g~~~~--~~l~~~~~~~~~~Vl~lDEid~l~~------------~~~~~Ll~~le~g~~~~~~ 666 (848)
.+. |+|.... ..+.+.+++..+||+||||+|.+.- ++.|+||+.|+.-. ..
T Consensus 188 iGe------------hVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~--en- 252 (368)
T COG1223 188 IGE------------HVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIK--EN- 252 (368)
T ss_pred HHH------------HhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcc--cC-
Confidence 443 6665332 4577778888999999999998742 48999999998632 11
Q ss_pred CceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHH
Q 003094 667 GRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVK 746 (848)
Q Consensus 667 g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~ 746 (848)
..++.|++||... .++|++++||..-|.|.-++.++..
T Consensus 253 ------eGVvtIaaTN~p~------------------------------------~LD~aiRsRFEeEIEF~LP~~eEr~ 290 (368)
T COG1223 253 ------EGVVTIAATNRPE------------------------------------LLDPAIRSRFEEEIEFKLPNDEERL 290 (368)
T ss_pred ------CceEEEeecCChh------------------------------------hcCHHHHhhhhheeeeeCCChHHHH
Confidence 3468899998333 3789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHHHHHHHHHHHHHHcc
Q 003094 747 EIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSMAEKMLAR 810 (848)
Q Consensus 747 ~I~~~~l~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~l~~~l~~~~l~~ 810 (848)
+|++..++.+ -+.++.. +++++. -....+.|+++ ++.+..+|-+++..+
T Consensus 291 ~ile~y~k~~---------Plpv~~~-~~~~~~--~t~g~SgRdik---ekvlK~aLh~Ai~ed 339 (368)
T COG1223 291 EILEYYAKKF---------PLPVDAD-LRYLAA--KTKGMSGRDIK---EKVLKTALHRAIAED 339 (368)
T ss_pred HHHHHHHHhC---------CCccccC-HHHHHH--HhCCCCchhHH---HHHHHHHHHHHHHhc
Confidence 9998888763 2333333 556666 33345567664 677788888887654
No 61
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.80 E-value=4.6e-19 Score=180.18 Aligned_cols=205 Identities=19% Similarity=0.210 Sum_probs=163.3
Q ss_pred hhhhhhhhhcCCCCCccCChHHHHHHHHHhccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCc
Q 003094 184 GTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGL 263 (848)
Q Consensus 184 ~~~l~~~~~~~~ld~iiG~~~~~~~l~~~l~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~ 263 (848)
-..|++++||.++|+++|++.++..|...+.++..+|+|||||||||||+.++++|+.++. ..+....+.+.+.+.
T Consensus 23 ~~swteKYrPkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~----~~~~~~rvl~lnaSd 98 (346)
T KOG0989|consen 23 HRSWTEKYRPKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNC----EQLFPCRVLELNASD 98 (346)
T ss_pred ccchHHHhCCCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcC----ccccccchhhhcccc
Confidence 3469999999999999999999999999999988999999999999999999999999976 334456677777666
Q ss_pred ccccccccchHHHHHHHHHHHHH-----hCCC-eEEEEcccchhhhCCCCCchHHHHHHHhhhhcC--CceEEEEeeChH
Q 003094 264 LVAGTKYRGEFEERLKKLMEEIK-----QSDE-IILFIDEVHTLIGAGAAEGAIDAANILKPSLAR--GELQCIGATTLD 335 (848)
Q Consensus 264 l~~~~~~~g~~~~~l~~l~~~~~-----~~~~-~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~atn~~ 335 (848)
..+.+ ...+-.....++..... .+.+ .|++|||+|.| ..+++..|++.+++ ..+++|..||..
T Consensus 99 erGis-vvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsm--------tsdaq~aLrr~mE~~s~~trFiLIcnyl 169 (346)
T KOG0989|consen 99 ERGIS-VVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSM--------TSDAQAALRRTMEDFSRTTRFILICNYL 169 (346)
T ss_pred ccccc-chhhhhcCHHHHhhccccccCCCCCcceEEEEechhhh--------hHHHHHHHHHHHhccccceEEEEEcCCh
Confidence 54322 11121222222222221 1222 69999999999 46699999999984 668999999998
Q ss_pred HHHhhhhcChhhhcccCCCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCChhhHHHHHHHH
Q 003094 336 EYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEA 415 (848)
Q Consensus 336 ~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~p~~a~~ll~~a 415 (848)
+ .+...+.+||+.+.|++...+.....|+.++. .+++.++++++..++..+.|-+.+ |+-.|+.+
T Consensus 170 s-----rii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~----~E~v~~d~~al~~I~~~S~GdLR~------Ait~Lqsl 234 (346)
T KOG0989|consen 170 S-----RIIRPLVSRCQKFRFKKLKDEDIVDRLEKIAS----KEGVDIDDDALKLIAKISDGDLRR------AITTLQSL 234 (346)
T ss_pred h-----hCChHHHhhHHHhcCCCcchHHHHHHHHHHHH----HhCCCCCHHHHHHHHHHcCCcHHH------HHHHHHHh
Confidence 8 78999999999999999999998888888877 579999999999999999887654 77777766
Q ss_pred h
Q 003094 416 G 416 (848)
Q Consensus 416 ~ 416 (848)
.
T Consensus 235 s 235 (346)
T KOG0989|consen 235 S 235 (346)
T ss_pred h
Confidence 4
No 62
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=2.7e-19 Score=186.75 Aligned_cols=185 Identities=25% Similarity=0.382 Sum_probs=152.9
Q ss_pred CCCCCccCChHHHHHHHHHhc--------------cCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEE
Q 003094 194 GKLDPVVGRQPQIERVVQILG--------------RRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITL 259 (848)
Q Consensus 194 ~~ld~iiG~~~~~~~l~~~l~--------------~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~ 259 (848)
.+++++-|.+.+++++.+.+- .+++.+|||+||||||||.+|+++|++. +..++-+
T Consensus 89 v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akea----------ga~fInv 158 (386)
T KOG0737|consen 89 VSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEA----------GANFINV 158 (386)
T ss_pred eehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHc----------CCCccee
Confidence 368899999999998877532 1467899999999999999999999998 6778889
Q ss_pred eCCcccccccccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCCchHHHHHHHhh-hh-------c--CCceEEE
Q 003094 260 DMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKP-SL-------A--RGELQCI 329 (848)
Q Consensus 260 ~~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~-~l-------~--~~~v~vI 329 (848)
+++.+. .+|-|+.++.++.+|..+.+-.|+|+||||+|.+...+ ...+.++...++. ++ . +..++|+
T Consensus 159 ~~s~lt--~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R-~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVl 235 (386)
T KOG0737|consen 159 SVSNLT--SKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQR-RSTDHEATAMMKNEFMALWDGLSSKDSERVLVL 235 (386)
T ss_pred eccccc--hhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhc-ccchHHHHHHHHHHHHHHhccccCCCCceEEEE
Confidence 999888 48999999999999999999999999999999999887 4444444444432 22 2 3349999
Q ss_pred EeeChHHHHhhhhcChhhhcccC-CCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhccccc
Q 003094 330 GATTLDEYRKHIEKDPALERRFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISD 401 (848)
Q Consensus 330 ~atn~~~~~~~~~~d~al~~Rf~-~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~ 401 (848)
|+||++. ++|.++.||+. .+.|+.|+..+|.+||+-+++.- ++. ++-++..++..+.||.+.
T Consensus 236 gATNRP~-----DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e----~~e-~~vD~~~iA~~t~GySGS 298 (386)
T KOG0737|consen 236 GATNRPF-----DLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKE----KLE-DDVDLDEIAQMTEGYSGS 298 (386)
T ss_pred eCCCCCc-----cHHHHHHHhCcceeeeCCCchhhHHHHHHHHhccc----ccC-cccCHHHHHHhcCCCcHH
Confidence 9999997 89999999996 89999999999999999988742 222 344688899999999887
No 63
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.80 E-value=1.3e-18 Score=208.75 Aligned_cols=229 Identities=15% Similarity=0.221 Sum_probs=180.6
Q ss_pred hccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhcc
Q 003094 530 HKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 609 (848)
Q Consensus 530 ~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l 609 (848)
+..++|++.++..+.+.+...... ..++|++|++|||||++|++|+......+.+|+.+||..+......+.+
T Consensus 375 ~~~liG~S~~~~~~~~~~~~~a~~-------~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~~~~~l 447 (686)
T PRK15429 375 FGEIIGRSEAMYSVLKQVEMVAQS-------DSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDL 447 (686)
T ss_pred ccceeecCHHHHHHHHHHHHHhCC-------CCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChhHhhhhh
Confidence 357999999999999888876322 1349999999999999999999988777899999999998765556678
Q ss_pred cCCCCCCcccccccchhHHHHcCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCchhhh
Q 003094 610 IGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIE 689 (848)
Q Consensus 610 ~g~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~i~ 689 (848)
||...+...... ..-.+.+..+.+++||||||+.+++++|..|+++|+++.+...++......++++|++|+......
T Consensus 448 fg~~~~~~~g~~-~~~~g~le~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~- 525 (686)
T PRK15429 448 FGHERGAFTGAS-AQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKM- 525 (686)
T ss_pred cCcccccccccc-cchhhHHHhcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCCHHHH-
Confidence 887543221111 112234566778999999999999999999999999999887776665667899999997443211
Q ss_pred ccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCe-EEEcCCCCH--HHHHHHHHHHHHHHHHHHhcCCCe
Q 003094 690 KGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDE-MIVFRQLTK--LEVKEIADIMLKEVFDRLKTKDIE 766 (848)
Q Consensus 690 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~-~i~f~~l~~--~el~~I~~~~l~~~~~~~~~~~~~ 766 (848)
.-...|+++|+.|+.. .|.+|||.+ +|+..+++.++.++..++ +..
T Consensus 526 ----------------------------~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~---~~~ 574 (686)
T PRK15429 526 ----------------------------VADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRM---GRN 574 (686)
T ss_pred ----------------------------HHcCcccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHc---CCC
Confidence 1123588999999966 499999965 899999999999887665 333
Q ss_pred E-eecHHHHHHHHHccCCCCCCchHHHHHHHHHHH
Q 003094 767 L-QVTERFRERVVEEGYNPSYGARPLRRAIMRLLE 800 (848)
Q Consensus 767 l-~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~l~ 800 (848)
+ .+++++++.|.. |+|++|.|+|+++|++++.
T Consensus 575 ~~~~s~~al~~L~~--y~WPGNvrEL~~~i~~a~~ 607 (686)
T PRK15429 575 IDSIPAETLRTLSN--MEWPGNVRELENVIERAVL 607 (686)
T ss_pred CCCcCHHHHHHHHh--CCCCCcHHHHHHHHHHHHH
Confidence 3 489999999999 9999999999999998875
No 64
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=5.7e-19 Score=191.45 Aligned_cols=203 Identities=23% Similarity=0.314 Sum_probs=163.8
Q ss_pred hhhhhhcCCCCCccCChHHHHHHHHHh------------ccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCc
Q 003094 187 LTKLAEEGKLDPVVGRQPQIERVVQIL------------GRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGK 254 (848)
Q Consensus 187 l~~~~~~~~ld~iiG~~~~~~~l~~~l------------~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~ 254 (848)
+....++..++++-|.+...+.+.+.. .+...+++||.||||+|||++++++|.+. ++
T Consensus 143 I~~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~----------~a 212 (428)
T KOG0740|consen 143 IGDTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATES----------GA 212 (428)
T ss_pred HhccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhh----------cc
Confidence 334445567899999887777655542 13567889999999999999999999988 66
Q ss_pred eEEEEeCCcccccccccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCCch----HHHHHHHhhhh-----cCCc
Q 003094 255 KVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGA----IDAANILKPSL-----ARGE 325 (848)
Q Consensus 255 ~v~~~~~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~~~----~~~~~~L~~~l-----~~~~ 325 (848)
.++.+..+.+. ++|.|+.+..++.+|.-++..+|.|+||||+|.++..+..+.. .--.+.|.+.. ..++
T Consensus 213 tff~iSassLt--sK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~dr 290 (428)
T KOG0740|consen 213 TFFNISASSLT--SKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDR 290 (428)
T ss_pred eEeeccHHHhh--hhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCe
Confidence 78888888887 7899999999999999999999999999999999977643321 12233333333 2568
Q ss_pred eEEEEeeChHHHHhhhhcChhhhcccC-CCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCC
Q 003094 326 LQCIGATTLDEYRKHIEKDPALERRFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFL 404 (848)
Q Consensus 326 v~vI~atn~~~~~~~~~~d~al~~Rf~-~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~ 404 (848)
+++|||||.+. ++|.+++|||+ .++||.|+.+.|..+|+.++.. +...+++..+..+++++.+|.+.
T Consensus 291 vlvigaTN~P~-----e~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~----~~~~l~~~d~~~l~~~Tegysgs--- 358 (428)
T KOG0740|consen 291 VLVIGATNRPW-----ELDEAARRRFVKRLYIPLPDYETRSLLWKQLLKE----QPNGLSDLDISLLAKVTEGYSGS--- 358 (428)
T ss_pred EEEEecCCCch-----HHHHHHHHHhhceeeecCCCHHHHHHHHHHHHHh----CCCCccHHHHHHHHHHhcCcccc---
Confidence 99999999997 79999999998 8899999999999999999885 35677889999999999999877
Q ss_pred hhhHHHHHHHH
Q 003094 405 PDKAIDLIDEA 415 (848)
Q Consensus 405 p~~a~~ll~~a 415 (848)
+..+++.+|
T Consensus 359 --di~~l~kea 367 (428)
T KOG0740|consen 359 --DITALCKEA 367 (428)
T ss_pred --cHHHHHHHh
Confidence 455666555
No 65
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=1.3e-18 Score=201.74 Aligned_cols=204 Identities=26% Similarity=0.372 Sum_probs=162.2
Q ss_pred CCCCCccCChHHHHHHHHHh-------------ccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEe
Q 003094 194 GKLDPVVGRQPQIERVVQIL-------------GRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLD 260 (848)
Q Consensus 194 ~~ld~iiG~~~~~~~l~~~l-------------~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~ 260 (848)
..++++.|.+...+.+.+.+ ..+.+.++||+||||||||++|+++|..+ +.+++.++
T Consensus 239 v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~----------~~~fi~v~ 308 (494)
T COG0464 239 VTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALES----------RSRFISVK 308 (494)
T ss_pred cceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhC----------CCeEEEee
Confidence 46778888887777655542 23566789999999999999999999977 67899999
Q ss_pred CCcccccccccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCCch---HHHHHHHhhhhc----CCceEEEEeeC
Q 003094 261 MGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGA---IDAANILKPSLA----RGELQCIGATT 333 (848)
Q Consensus 261 ~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~~~---~~~~~~L~~~l~----~~~v~vI~atn 333 (848)
.+.+. ++|.|+++++++.+|..+++..|+||||||+|.+++.+..... ..+.+.|+..++ ...+++|++||
T Consensus 309 ~~~l~--sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN 386 (494)
T COG0464 309 GSELL--SKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATN 386 (494)
T ss_pred CHHHh--ccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCC
Confidence 99777 7899999999999999999999999999999999987654432 356666666653 45689999999
Q ss_pred hHHHHhhhhcChhhhc--ccC-CCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCChhhHHH
Q 003094 334 LDEYRKHIEKDPALER--RFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAID 410 (848)
Q Consensus 334 ~~~~~~~~~~d~al~~--Rf~-~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~p~~a~~ 410 (848)
.++ .+|+++.| ||+ .+.|+.|+.++|.+|++.++.+.... ...+-.+..+++.+.+|.+. +...
T Consensus 387 ~p~-----~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~---~~~~~~~~~l~~~t~~~sga-----di~~ 453 (494)
T COG0464 387 RPD-----DLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPP---LAEDVDLEELAEITEGYSGA-----DIAA 453 (494)
T ss_pred Ccc-----ccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCc---chhhhhHHHHHHHhcCCCHH-----HHHH
Confidence 998 69999999 998 89999999999999999888742111 23455777888877776544 6777
Q ss_pred HHHHHhhHHHHh
Q 003094 411 LIDEAGSRVRLR 422 (848)
Q Consensus 411 ll~~a~~~~~~~ 422 (848)
++.+|...+...
T Consensus 454 i~~ea~~~~~~~ 465 (494)
T COG0464 454 LVREAALEALRE 465 (494)
T ss_pred HHHHHHHHHHHH
Confidence 777776554433
No 66
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=7.5e-18 Score=187.31 Aligned_cols=255 Identities=23% Similarity=0.372 Sum_probs=197.8
Q ss_pred HHHhhCCCCcccCcchHHHHHHHHHHhhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHH
Q 003094 503 VSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALA 582 (848)
Q Consensus 503 ~~~~~g~p~~~~~~~~~~~l~~l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la 582 (848)
+.-.+.+|..+.+.+ ..++...+..|.++-.|.++++++|.+.+.-.+..... +. ..++|+||||+|||++|+.||
T Consensus 384 Ldwlt~LPWgk~S~E-n~dl~~Ak~iLdeDHYgm~dVKeRILEfiAV~kLrgs~--qG-kIlCf~GPPGVGKTSI~kSIA 459 (906)
T KOG2004|consen 384 LDWLTSLPWGKSSTE-NLDLARAKEILDEDHYGMEDVKERILEFIAVGKLRGSV--QG-KILCFVGPPGVGKTSIAKSIA 459 (906)
T ss_pred HHHHHhCCCCCCChh-hhhHHHHHHhhcccccchHHHHHHHHHHHHHHhhcccC--CC-cEEEEeCCCCCCcccHHHHHH
Confidence 344466777776665 44577888999999999999999999998766543222 11 248899999999999999999
Q ss_pred HHhcCCCCceEEecccccccccchhcccCCCCCCcccccccchhHHHHcCC--CeEEEEcCCCcCCh----HHHHHHHhh
Q 003094 583 AYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRP--YTVVLFDEIEKAHP----DVFNMMLQI 656 (848)
Q Consensus 583 ~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~--~~Vl~lDEid~l~~----~~~~~Ll~~ 656 (848)
+.+ +..|+++..+.+ .+++++-|+...|+|.-. +.+.+++++.. +.+++||||||+.. +--.+||.+
T Consensus 460 ~AL---nRkFfRfSvGG~---tDvAeIkGHRRTYVGAMP-GkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLEl 532 (906)
T KOG2004|consen 460 RAL---NRKFFRFSVGGM---TDVAEIKGHRRTYVGAMP-GKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLEL 532 (906)
T ss_pred HHh---CCceEEEecccc---ccHHhhcccceeeeccCC-hHHHHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHHh
Confidence 999 778999888777 456778888888999855 66677777643 56999999999954 355788888
Q ss_pred hcC---cEEEcCC-CceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccC
Q 003094 657 LED---GRLTDSK-GRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLD 732 (848)
Q Consensus 657 le~---g~~~~~~-g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d 732 (848)
|+- ..|.|.. .-.+|.++++||+|+|.-. .++|+|++|+
T Consensus 533 LDPEQNanFlDHYLdVp~DLSkVLFicTAN~id------------------------------------tIP~pLlDRM- 575 (906)
T KOG2004|consen 533 LDPEQNANFLDHYLDVPVDLSKVLFICTANVID------------------------------------TIPPPLLDRM- 575 (906)
T ss_pred cChhhccchhhhccccccchhheEEEEeccccc------------------------------------cCChhhhhhh-
Confidence 874 3343322 5678899999999999433 3789999999
Q ss_pred eEEEcCCCCHHHHHHHHHHHHHH-HHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHHHHHHHHHHHH
Q 003094 733 EMIVFRQLTKLEVKEIADIMLKE-VFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSMAEK 806 (848)
Q Consensus 733 ~~i~f~~l~~~el~~I~~~~l~~-~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~l~~~l~~~ 806 (848)
++|.+.-|..+|..+|+..+|-. ...........+.++++++..|..+ |....|.|.|++-|+.+++..-.+.
T Consensus 576 EvIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI~~-YcrEaGVRnLqk~iekI~Rk~Al~v 649 (906)
T KOG2004|consen 576 EVIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALIER-YCREAGVRNLQKQIEKICRKVALKV 649 (906)
T ss_pred heeeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhcCccHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999777753 3333333445678999999988875 8888999999999998887765544
No 67
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.80 E-value=1e-18 Score=194.50 Aligned_cols=202 Identities=22% Similarity=0.307 Sum_probs=154.3
Q ss_pred hhcCCCCCccCChHHHHHHHHHhc-------------cCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEE
Q 003094 191 AEEGKLDPVVGRQPQIERVVQILG-------------RRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVI 257 (848)
Q Consensus 191 ~~~~~ld~iiG~~~~~~~l~~~l~-------------~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~ 257 (848)
..+.+++++.|.+++++++.+.+. ..++.++||+||||||||++|+++|+.+ +.+++
T Consensus 177 ~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el----------~~~fi 246 (438)
T PTZ00361 177 APLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANET----------SATFL 246 (438)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhh----------CCCEE
Confidence 344678899999999998877653 3467889999999999999999999987 34577
Q ss_pred EEeCCcccccccccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCC---CchHHHHHHHhhhh-------cCCceE
Q 003094 258 TLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAA---EGAIDAANILKPSL-------ARGELQ 327 (848)
Q Consensus 258 ~~~~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~---~~~~~~~~~L~~~l-------~~~~v~ 327 (848)
.+..+.+. .++.|+.+..++.+|..+....|+||||||+|.+...+.. .+..+....+..++ ...++.
T Consensus 247 ~V~~seL~--~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~ 324 (438)
T PTZ00361 247 RVVGSELI--QKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVK 324 (438)
T ss_pred EEecchhh--hhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeE
Confidence 78777776 4688888899999999999889999999999999865422 22333333333333 356799
Q ss_pred EEEeeChHHHHhhhhcChhhhc--ccC-CCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCC-hHHHHHHHhhhhcccccCC
Q 003094 328 CIGATTLDEYRKHIEKDPALER--RFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYT-DEALVSAAQLSYQYISDRF 403 (848)
Q Consensus 328 vI~atn~~~~~~~~~~d~al~~--Rf~-~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s-~~~l~~l~~~s~~~~~~~~ 403 (848)
||++||..+ .+|+++.| ||+ .|+|+.|+.++|.+||+.++.++ .+. +-.+..++..+.++.+.
T Consensus 325 VI~ATNr~d-----~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~------~l~~dvdl~~la~~t~g~sgA-- 391 (438)
T PTZ00361 325 VIMATNRIE-----SLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKM------TLAEDVDLEEFIMAKDELSGA-- 391 (438)
T ss_pred EEEecCChH-----HhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcC------CCCcCcCHHHHHHhcCCCCHH--
Confidence 999999988 68999987 897 89999999999999999877643 222 22466777777776544
Q ss_pred ChhhHHHHHHHHhhHHH
Q 003094 404 LPDKAIDLIDEAGSRVR 420 (848)
Q Consensus 404 ~p~~a~~ll~~a~~~~~ 420 (848)
+...++.+|+..+.
T Consensus 392 ---dI~~i~~eA~~~Al 405 (438)
T PTZ00361 392 ---DIKAICTEAGLLAL 405 (438)
T ss_pred ---HHHHHHHHHHHHHH
Confidence 56667777765543
No 68
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.80 E-value=1.3e-18 Score=184.32 Aligned_cols=213 Identities=23% Similarity=0.327 Sum_probs=155.5
Q ss_pred CCCCccCChHHHHHHHHHhc---------------cCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEE
Q 003094 195 KLDPVVGRQPQIERVVQILG---------------RRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITL 259 (848)
Q Consensus 195 ~ld~iiG~~~~~~~l~~~l~---------------~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~ 259 (848)
.+++++|+++++++|.++.. .+...|++|+||||||||++|+.+|+.+..... +....++.+
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~---~~~~~~v~~ 80 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNV---LSKGHLIEV 80 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCc---ccCCceEEe
Confidence 46779999999988765422 124568899999999999999999998754221 234467888
Q ss_pred eCCcccccccccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhc--CCceEEEEeeChHHH
Q 003094 260 DMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLA--RGELQCIGATTLDEY 337 (848)
Q Consensus 260 ~~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~--~~~v~vI~atn~~~~ 337 (848)
+++++. +.+.|+....+..+++.+. ++||||||+|.|...+......+.++.|...++ .+.+++|+++++.++
T Consensus 81 ~~~~l~--~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~ 155 (261)
T TIGR02881 81 ERADLV--GEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEM 155 (261)
T ss_pred cHHHhh--hhhccchHHHHHHHHHhcc---CCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchh
Confidence 888877 4578888888888887653 459999999999643322234567777877776 355778888877766
Q ss_pred HhhhhcChhhhcccC-CCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccc----cCCChhhHHHHH
Q 003094 338 RKHIEKDPALERRFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYIS----DRFLPDKAIDLI 412 (848)
Q Consensus 338 ~~~~~~d~al~~Rf~-~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~----~~~~p~~a~~ll 412 (848)
.....++|++.+||. .|.||.++.+++.+|++.++.. .+..++++++..++....+... .....+.+..++
T Consensus 156 ~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~----~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~ 231 (261)
T TIGR02881 156 DYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKE----REYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNII 231 (261)
T ss_pred HHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHH----cCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHH
Confidence 666788999999996 7999999999999999988864 4667899998888766544321 112234566666
Q ss_pred HHHhhHH
Q 003094 413 DEAGSRV 419 (848)
Q Consensus 413 ~~a~~~~ 419 (848)
+.|..+.
T Consensus 232 e~a~~~~ 238 (261)
T TIGR02881 232 EKAIRRQ 238 (261)
T ss_pred HHHHHHH
Confidence 6665444
No 69
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=1.3e-18 Score=180.40 Aligned_cols=166 Identities=28% Similarity=0.440 Sum_probs=131.7
Q ss_pred hccccChHHHHHHHHHHHHHH--------HccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccc
Q 003094 530 HKRVIGQDEAVKAISRAIRRA--------RVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFM 601 (848)
Q Consensus 530 ~~~vigq~~~~~~l~~~~~~~--------~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~ 601 (848)
..+|-|.+..++.|.+.++.. ..|+.+|+ .+|||||||||||.|||++|+.. +..|+++..+++.
T Consensus 150 Y~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPK----GVLLYGPPGTGKTLLAkAVA~~T---~AtFIrvvgSElV 222 (406)
T COG1222 150 YEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPK----GVLLYGPPGTGKTLLAKAVANQT---DATFIRVVGSELV 222 (406)
T ss_pred hhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCC----ceEeeCCCCCcHHHHHHHHHhcc---CceEEEeccHHHH
Confidence 457888888888888888543 35666655 49999999999999999999876 8899999999986
Q ss_pred cccchhcccCCCCCCcccccc--cchhHHHHcCCCeEEEEcCCCcC-----------ChHHHHHHHhhhcCcEEEcCCCc
Q 003094 602 ERHTVSKLIGSPPGYVGYTEG--GQLTEAVRRRPYTVVLFDEIEKA-----------HPDVFNMMLQILEDGRLTDSKGR 668 (848)
Q Consensus 602 ~~~~~~~l~g~~~g~~g~~~~--~~l~~~~~~~~~~Vl~lDEid~l-----------~~~~~~~Ll~~le~g~~~~~~g~ 668 (848)
.. |+|+... +.+|..++...+|||||||||.+ ..++|..|+++|..---.|
T Consensus 223 qK------------YiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD---- 286 (406)
T COG1222 223 QK------------YIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFD---- 286 (406)
T ss_pred HH------------HhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCC----
Confidence 54 5555433 66889999999999999999976 4579998888885411011
Q ss_pred eeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhh--hccCeEEEcCCCCHHHHH
Q 003094 669 TVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFL--NRLDEMIVFRQLTKLEVK 746 (848)
Q Consensus 669 ~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll--~R~d~~i~f~~l~~~el~ 746 (848)
+..|+-+|++||... .++|+|+ +|||..|.|+.++.+...
T Consensus 287 --~~~nvKVI~ATNR~D------------------------------------~LDPALLRPGR~DRkIEfplPd~~gR~ 328 (406)
T COG1222 287 --PRGNVKVIMATNRPD------------------------------------ILDPALLRPGRFDRKIEFPLPDEEGRA 328 (406)
T ss_pred --CCCCeEEEEecCCcc------------------------------------ccChhhcCCCcccceeecCCCCHHHHH
Confidence 125889999999544 2678888 799999999999999999
Q ss_pred HHHHHHHHHH
Q 003094 747 EIADIMLKEV 756 (848)
Q Consensus 747 ~I~~~~l~~~ 756 (848)
+|++....++
T Consensus 329 ~Il~IHtrkM 338 (406)
T COG1222 329 EILKIHTRKM 338 (406)
T ss_pred HHHHHHhhhc
Confidence 9998777653
No 70
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.79 E-value=1.2e-18 Score=201.22 Aligned_cols=200 Identities=27% Similarity=0.365 Sum_probs=153.3
Q ss_pred cCCCCCccCChHHHHHHHHHhc------------cCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEe
Q 003094 193 EGKLDPVVGRQPQIERVVQILG------------RRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLD 260 (848)
Q Consensus 193 ~~~ld~iiG~~~~~~~l~~~l~------------~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~ 260 (848)
..+|++++|.++.++++.+++. ...++++||+||||||||++++++|..+ +.+++.++
T Consensus 51 ~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~----------~~~~~~i~ 120 (495)
T TIGR01241 51 KVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA----------GVPFFSIS 120 (495)
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc----------CCCeeecc
Confidence 3578999999988877665432 4567889999999999999999999987 56788888
Q ss_pred CCcccccccccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCC---ch---HHHHHHHhhhh----cCCceEEEE
Q 003094 261 MGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAE---GA---IDAANILKPSL----ARGELQCIG 330 (848)
Q Consensus 261 ~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~---~~---~~~~~~L~~~l----~~~~v~vI~ 330 (848)
.+.+. ..+.|..+..++.+|+.++...|+||||||+|.+...+... .. ....+.|+..+ .+.+++||+
T Consensus 121 ~~~~~--~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~ 198 (495)
T TIGR01241 121 GSDFV--EMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIA 198 (495)
T ss_pred HHHHH--HHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEE
Confidence 77766 44667778899999999998889999999999998654331 11 23344444444 356799999
Q ss_pred eeChHHHHhhhhcChhhhc--ccC-CCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCChhh
Q 003094 331 ATTLDEYRKHIEKDPALER--RFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDK 407 (848)
Q Consensus 331 atn~~~~~~~~~~d~al~~--Rf~-~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~p~~ 407 (848)
+||.++ .+|+++.| ||+ .|.|+.|+.++|.+|++.++... ... .+..+..++..+.+|.+. +
T Consensus 199 aTn~~~-----~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~----~~~-~~~~l~~la~~t~G~sga-----d 263 (495)
T TIGR01241 199 ATNRPD-----VLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNK----KLA-PDVDLKAVARRTPGFSGA-----D 263 (495)
T ss_pred ecCChh-----hcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcC----CCC-cchhHHHHHHhCCCCCHH-----H
Confidence 999998 69999998 897 89999999999999999887642 111 344577888888877544 6
Q ss_pred HHHHHHHHhhHH
Q 003094 408 AIDLIDEAGSRV 419 (848)
Q Consensus 408 a~~ll~~a~~~~ 419 (848)
...++.+|...+
T Consensus 264 l~~l~~eA~~~a 275 (495)
T TIGR01241 264 LANLLNEAALLA 275 (495)
T ss_pred HHHHHHHHHHHH
Confidence 777777775443
No 71
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.79 E-value=1.7e-18 Score=182.81 Aligned_cols=161 Identities=16% Similarity=0.141 Sum_probs=127.2
Q ss_pred hccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccccccccchHHHHHHHHHHHHHh-----
Q 003094 213 LGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQ----- 287 (848)
Q Consensus 213 l~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~~~~g~~~~~l~~l~~~~~~----- 287 (848)
++.+.+..++|+||||||||.+|+++|+++ +..++.++.+.+. ++|.|+.++.++.+|..+..
T Consensus 143 ~~ik~PlgllL~GPPGcGKTllAraiA~el----------g~~~i~vsa~eL~--sk~vGEsEk~IR~~F~~A~~~a~~~ 210 (413)
T PLN00020 143 PNIKVPLILGIWGGKGQGKSFQCELVFKKM----------GIEPIVMSAGELE--SENAGEPGKLIRQRYREAADIIKKK 210 (413)
T ss_pred cCCCCCeEEEeeCCCCCCHHHHHHHHHHHc----------CCCeEEEEHHHhh--cCcCCcHHHHHHHHHHHHHHHhhcc
Confidence 345778889999999999999999999999 6778999999888 67999999999999998874
Q ss_pred CCCeEEEEcccchhhhCCCCCc-h--HHHH-HHHhhhhc----------------CCceEEEEeeChHHHHhhhhcChhh
Q 003094 288 SDEIILFIDEVHTLIGAGAAEG-A--IDAA-NILKPSLA----------------RGELQCIGATTLDEYRKHIEKDPAL 347 (848)
Q Consensus 288 ~~~~IL~IDEid~l~~~~~~~~-~--~~~~-~~L~~~l~----------------~~~v~vI~atn~~~~~~~~~~d~al 347 (848)
..||||||||||.+++...... . ..+. ..|..+++ ...+.||+|||.++ .+||+|
T Consensus 211 ~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd-----~LDpAL 285 (413)
T PLN00020 211 GKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFS-----TLYAPL 285 (413)
T ss_pred CCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcc-----cCCHhH
Confidence 5699999999999997654221 1 1222 34444332 45599999999998 699999
Q ss_pred hc--ccCCCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhc
Q 003094 348 ER--RFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQ 397 (848)
Q Consensus 348 ~~--Rf~~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~ 397 (848)
+| ||+.. +..|+.++|.+||+.++++ ..++...+..++....+
T Consensus 286 lRpGRfDk~-i~lPd~e~R~eIL~~~~r~------~~l~~~dv~~Lv~~f~g 330 (413)
T PLN00020 286 IRDGRMEKF-YWAPTREDRIGVVHGIFRD------DGVSREDVVKLVDTFPG 330 (413)
T ss_pred cCCCCCCce-eCCCCHHHHHHHHHHHhcc------CCCCHHHHHHHHHcCCC
Confidence 99 99853 4589999999999988774 34566677776664433
No 72
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.79 E-value=6.4e-19 Score=172.43 Aligned_cols=144 Identities=22% Similarity=0.314 Sum_probs=112.8
Q ss_pred ccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhcccCC
Q 003094 533 VIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGS 612 (848)
Q Consensus 533 vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~ 612 (848)
++|.+.++..+.+.++..... ..++|++|++||||+.+|++|++...+.+.||+.+||+.+........|||.
T Consensus 1 liG~s~~m~~~~~~~~~~a~~-------~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~ 73 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASS-------DLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGH 73 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTS-------TS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEB
T ss_pred CEeCCHHHHHHHHHHHHHhCC-------CCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhcc
Confidence 588999999999998876321 1459999999999999999999988888899999999999887777889998
Q ss_pred CCCCcccccccchhHHHHcCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCC
Q 003094 613 PPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVG 684 (848)
Q Consensus 613 ~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~ 684 (848)
..+...... ..-.+.+..+.+++||||||+.+++++|..|+++|+++.+...++......+++||++|+..
T Consensus 74 ~~~~~~~~~-~~~~G~l~~A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~~ 144 (168)
T PF00158_consen 74 EKGAFTGAR-SDKKGLLEQANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSKD 144 (168)
T ss_dssp CSSSSTTTS-SEBEHHHHHTTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS-
T ss_pred ccccccccc-cccCCceeeccceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCcC
Confidence 654322111 12237888899999999999999999999999999999999887776667899999999843
No 73
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=2e-18 Score=170.28 Aligned_cols=185 Identities=22% Similarity=0.345 Sum_probs=143.6
Q ss_pred CCCCccCChHHHHHHHHH-------------hccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeC
Q 003094 195 KLDPVVGRQPQIERVVQI-------------LGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDM 261 (848)
Q Consensus 195 ~ld~iiG~~~~~~~l~~~-------------l~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~ 261 (848)
..+++-|.++++++|.+. |+.+++.++|+|||||||||.+|++.|..-+. .++.+-.
T Consensus 169 ~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~a----------TFLKLAg 238 (424)
T KOG0652|consen 169 QYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNA----------TFLKLAG 238 (424)
T ss_pred cccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccc----------hHHHhcc
Confidence 477899999999998876 35578999999999999999999999986632 2332322
Q ss_pred CcccccccccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCC---CCchHHHHHHHhhhhc-------CCceEEEEe
Q 003094 262 GLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGA---AEGAIDAANILKPSLA-------RGELQCIGA 331 (848)
Q Consensus 262 ~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~---~~~~~~~~~~L~~~l~-------~~~v~vI~a 331 (848)
-.+. ..|.|+-.+.++..|..++...|+|+||||+|.+-..+. ..++.+++..++.++. ...+.+|++
T Consensus 239 PQLV--QMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAA 316 (424)
T KOG0652|consen 239 PQLV--QMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAA 316 (424)
T ss_pred hHHH--hhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEee
Confidence 2233 457888889999999999999999999999999865432 2345666666555553 567999999
Q ss_pred eChHHHHhhhhcChhhhc--ccC-CCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhccccc
Q 003094 332 TTLDEYRKHIEKDPALER--RFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISD 401 (848)
Q Consensus 332 tn~~~~~~~~~~d~al~~--Rf~-~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~ 401 (848)
||+.+ -+||+|+| |++ .|+||.|+.+.|..|++.+..++.....+ ..+.+++.++.|-+.
T Consensus 317 TNRvD-----iLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~Dv-----NfeELaRsTddFNGA 379 (424)
T KOG0652|consen 317 TNRVD-----ILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDV-----NFEELARSTDDFNGA 379 (424)
T ss_pred ccccc-----ccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCC-----CHHHHhhcccccCch
Confidence 99998 48999999 886 89999999999999999888765433333 356677777776554
No 74
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.78 E-value=3.3e-18 Score=189.82 Aligned_cols=202 Identities=21% Similarity=0.219 Sum_probs=156.9
Q ss_pred hhhhhhhhcCCCCCccCChHHHHHHHHHhccCCCCC-cEEECCCCCcHHHHHHHHHHHhhCCCCCC--------------
Q 003094 185 TNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNN-PCLIGEPGVGKTAIAEGLAQRIASGDVPD-------------- 249 (848)
Q Consensus 185 ~~l~~~~~~~~ld~iiG~~~~~~~l~~~l~~~~~~~-iLL~GppGtGKT~la~~la~~l~~~~~~~-------------- 249 (848)
..|.+++||.+|++++|++..++.|...+......| +||+||+|||||++|+.+|+.+++...+.
T Consensus 6 ~~L~~KyRP~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~ 85 (484)
T PRK14956 6 EVLSRKYRPQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEIT 85 (484)
T ss_pred chhHHHhCCCCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHH
Confidence 458899999999999999999999999988877666 69999999999999999999997643211
Q ss_pred CCCCceEEEEeCCcccccccccchHHHHHHHHHHHHH----hCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcC--
Q 003094 250 TIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIK----QSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR-- 323 (848)
Q Consensus 250 ~l~~~~v~~~~~~~l~~~~~~~g~~~~~l~~l~~~~~----~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~-- 323 (848)
......+++++...- .| ...++.+.+.+. .+...|+||||+|.|. .+.++.|+..++.
T Consensus 86 ~g~~~dviEIdaas~------~g--Vd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls--------~~A~NALLKtLEEPp 149 (484)
T PRK14956 86 KGISSDVLEIDAASN------RG--IENIRELRDNVKFAPMGGKYKVYIIDEVHMLT--------DQSFNALLKTLEEPP 149 (484)
T ss_pred ccCCccceeechhhc------cc--HHHHHHHHHHHHhhhhcCCCEEEEEechhhcC--------HHHHHHHHHHhhcCC
Confidence 001123445543211 11 123444444433 3456799999999994 4578888998885
Q ss_pred CceEEEEeeChHHHHhhhhcChhhhcccCCCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCC
Q 003094 324 GELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRF 403 (848)
Q Consensus 324 ~~v~vI~atn~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~ 403 (848)
..+++|++|+... .+.+++++||+.+.|..++.++..+.++.++.+ .++.++++++..+++.+.|.
T Consensus 150 ~~viFILaTte~~-----kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~----Egi~~e~eAL~~Ia~~S~Gd----- 215 (484)
T PRK14956 150 AHIVFILATTEFH-----KIPETILSRCQDFIFKKVPLSVLQDYSEKLCKI----ENVQYDQEGLFWIAKKGDGS----- 215 (484)
T ss_pred CceEEEeecCChh-----hccHHHHhhhheeeecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCh-----
Confidence 7889999988866 689999999999999999999998888887764 57889999999999999886
Q ss_pred ChhhHHHHHHHHhh
Q 003094 404 LPDKAIDLIDEAGS 417 (848)
Q Consensus 404 ~p~~a~~ll~~a~~ 417 (848)
+++|+.+|+.+.+
T Consensus 216 -~RdAL~lLeq~i~ 228 (484)
T PRK14956 216 -VRDMLSFMEQAIV 228 (484)
T ss_pred -HHHHHHHHHHHHH
Confidence 4559999988764
No 75
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.78 E-value=2.1e-18 Score=208.21 Aligned_cols=196 Identities=24% Similarity=0.346 Sum_probs=156.0
Q ss_pred CCCCCccCChHHHHHHHHHhc-------------cCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEe
Q 003094 194 GKLDPVVGRQPQIERVVQILG-------------RRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLD 260 (848)
Q Consensus 194 ~~ld~iiG~~~~~~~l~~~l~-------------~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~ 260 (848)
..++++.|.+..++.|.+.+. ...+.++||+||||||||++|+++|+.+ +.+++.++
T Consensus 450 ~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~----------~~~fi~v~ 519 (733)
T TIGR01243 450 VRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATES----------GANFIAVR 519 (733)
T ss_pred cchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc----------CCCEEEEe
Confidence 368889999998888777543 3567889999999999999999999988 56788898
Q ss_pred CCcccccccccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCCc----hHHHHHHHhhhhc----CCceEEEEee
Q 003094 261 MGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEG----AIDAANILKPSLA----RGELQCIGAT 332 (848)
Q Consensus 261 ~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~~----~~~~~~~L~~~l~----~~~v~vI~at 332 (848)
.+.+. .+|.|+.+..++.+|..++...|+||||||+|.+++.+.... ...+.+.|...++ ..+++||+||
T Consensus 520 ~~~l~--~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aT 597 (733)
T TIGR01243 520 GPEIL--SKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAAT 597 (733)
T ss_pred hHHHh--hcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeC
Confidence 88877 579999999999999999999999999999999987654322 2345555555553 5679999999
Q ss_pred ChHHHHhhhhcChhhhc--ccC-CCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCC-hHHHHHHHhhhhcccccCCChhhH
Q 003094 333 TLDEYRKHIEKDPALER--RFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYT-DEALVSAAQLSYQYISDRFLPDKA 408 (848)
Q Consensus 333 n~~~~~~~~~~d~al~~--Rf~-~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s-~~~l~~l~~~s~~~~~~~~~p~~a 408 (848)
|.++ .+|++++| ||+ .|+|+.|+.++|.+||+.+..+ ..+. +..+..++..+.+|.+. +.
T Consensus 598 n~~~-----~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~------~~~~~~~~l~~la~~t~g~sga-----di 661 (733)
T TIGR01243 598 NRPD-----ILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRS------MPLAEDVDLEELAEMTEGYTGA-----DI 661 (733)
T ss_pred CChh-----hCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcC------CCCCccCCHHHHHHHcCCCCHH-----HH
Confidence 9998 69999998 997 8999999999999999876553 2332 33578899988887655 45
Q ss_pred HHHHHHHhh
Q 003094 409 IDLIDEAGS 417 (848)
Q Consensus 409 ~~ll~~a~~ 417 (848)
..++.+|..
T Consensus 662 ~~~~~~A~~ 670 (733)
T TIGR01243 662 EAVCREAAM 670 (733)
T ss_pred HHHHHHHHH
Confidence 555555543
No 76
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=1.9e-18 Score=202.83 Aligned_cols=191 Identities=27% Similarity=0.407 Sum_probs=156.0
Q ss_pred cCCCCCccCChHHHHHHHHHh-------------ccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEE
Q 003094 193 EGKLDPVVGRQPQIERVVQIL-------------GRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITL 259 (848)
Q Consensus 193 ~~~ld~iiG~~~~~~~l~~~l-------------~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~ 259 (848)
-..||++-|.+..+.+|.+.. ...+++++||+||||||||..|+++|..+..+. .++.+.
T Consensus 261 ~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~-------~kisff 333 (1080)
T KOG0732|consen 261 SVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGN-------RKISFF 333 (1080)
T ss_pred ccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccc-------cccchh
Confidence 356899999999888877753 246788999999999999999999999987642 233322
Q ss_pred --eCCcccccccccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCCc---hHHHHHHHhhhhc----CCceEEEE
Q 003094 260 --DMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEG---AIDAANILKPSLA----RGELQCIG 330 (848)
Q Consensus 260 --~~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~~---~~~~~~~L~~~l~----~~~v~vI~ 330 (848)
+..+.. ++|+|+.+.+++.+|+++++..|.|+|+||||-|.+.+.+.. ...+...|+.+|. +|.+++||
T Consensus 334 mrkgaD~l--skwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvig 411 (1080)
T KOG0732|consen 334 MRKGADCL--SKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIG 411 (1080)
T ss_pred hhcCchhh--ccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEc
Confidence 223333 789999999999999999999999999999999988764432 3356666766665 78999999
Q ss_pred eeChHHHHhhhhcChhhhc--ccC-CCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhccccc
Q 003094 331 ATTLDEYRKHIEKDPALER--RFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISD 401 (848)
Q Consensus 331 atn~~~~~~~~~~d~al~~--Rf~-~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~ 401 (848)
+||+++ .+||+++| ||+ .++|+.|+.+.|.+|+.....++ .-.++...+..++..+.+|.+.
T Consensus 412 ATnRpd-----a~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw----~~~i~~~l~~~la~~t~gy~ga 476 (1080)
T KOG0732|consen 412 ATNRPD-----AIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKW----EPPISRELLLWLAEETSGYGGA 476 (1080)
T ss_pred ccCCcc-----ccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCC----CCCCCHHHHHHHHHhccccchH
Confidence 999999 68999988 897 89999999999999999887754 2456788899999999999876
No 77
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.78 E-value=1.3e-18 Score=179.14 Aligned_cols=205 Identities=21% Similarity=0.284 Sum_probs=155.9
Q ss_pred hhhhhhhhcCCCCCccCChHHHHH---HHHHhccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeC
Q 003094 185 TNLTKLAEEGKLDPVVGRQPQIER---VVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDM 261 (848)
Q Consensus 185 ~~l~~~~~~~~ld~iiG~~~~~~~---l~~~l~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~ 261 (848)
.+|.+++||.++++.+||+..+.+ |...+.....++++|+||||||||++|+.|+..-.. ..+..+.+
T Consensus 126 ~PLaermRPktL~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~---------~Syrfvel 196 (554)
T KOG2028|consen 126 KPLAERMRPKTLDDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKK---------HSYRFVEL 196 (554)
T ss_pred CChhhhcCcchHHHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCC---------CceEEEEE
Confidence 479999999999999999987764 666778889999999999999999999999986532 22444454
Q ss_pred CcccccccccchHHHHHHHHHHHHHh-----CCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCCceEEEEeeChHH
Q 003094 262 GLLVAGTKYRGEFEERLKKLMEEIKQ-----SDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATTLDE 336 (848)
Q Consensus 262 ~~l~~~~~~~g~~~~~l~~l~~~~~~-----~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~atn~~~ 336 (848)
+....+. ..++.+|+.+++ ....||||||||++.+. .++.+++..++|.+.+||+|+..+
T Consensus 197 SAt~a~t-------~dvR~ife~aq~~~~l~krkTilFiDEiHRFNks--------QQD~fLP~VE~G~I~lIGATTENP 261 (554)
T KOG2028|consen 197 SATNAKT-------NDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKS--------QQDTFLPHVENGDITLIGATTENP 261 (554)
T ss_pred eccccch-------HHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhh--------hhhcccceeccCceEEEecccCCC
Confidence 4444332 246667766653 34679999999999655 688999999999999999998876
Q ss_pred HHhhhhcChhhhcccCCCcCCCCCHHHHHHHHHHHHHHHhhhh---------cCCCChHHHHHHHhhhhcccccCCChhh
Q 003094 337 YRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHH---------KLRYTDEALVSAAQLSYQYISDRFLPDK 407 (848)
Q Consensus 337 ~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~Il~~~~~~~~~~~---------~~~~s~~~l~~l~~~s~~~~~~~~~p~~ 407 (848)
. +.++.+|.+||.++.+...+.+....||.+...-+.... .+.+++..+++++.+++|... .
T Consensus 262 S---Fqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR------~ 332 (554)
T KOG2028|consen 262 S---FQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR------A 332 (554)
T ss_pred c---cchhHHHHhccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHH------H
Confidence 4 579999999999999999999999999988554332111 124677889999999888643 3
Q ss_pred HHHHHHHHhhHHHHh
Q 003094 408 AIDLIDEAGSRVRLR 422 (848)
Q Consensus 408 a~~ll~~a~~~~~~~ 422 (848)
+...|.-+.+.+..+
T Consensus 333 aLN~Lems~~m~~tr 347 (554)
T KOG2028|consen 333 ALNALEMSLSMFCTR 347 (554)
T ss_pred HHHHHHHHHHHHHhh
Confidence 555555554433333
No 78
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=3.6e-18 Score=195.74 Aligned_cols=199 Identities=26% Similarity=0.353 Sum_probs=157.3
Q ss_pred CCCCCccCChHHHHHHHHH------------hccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeC
Q 003094 194 GKLDPVVGRQPQIERVVQI------------LGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDM 261 (848)
Q Consensus 194 ~~ld~iiG~~~~~~~l~~~------------l~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~ 261 (848)
.+|+|+.|.++.+++|.++ ++.+-++++||+||||||||.||+++|.+. +.+++.++.
T Consensus 308 V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA----------gVPF~svSG 377 (774)
T KOG0731|consen 308 VKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFSVSG 377 (774)
T ss_pred CccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc----------CCceeeech
Confidence 4699999999888776654 345778999999999999999999999987 788999999
Q ss_pred CcccccccccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCC----Cch---HHHHHHHhhhhc----CCceEEEE
Q 003094 262 GLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAA----EGA---IDAANILKPSLA----RGELQCIG 330 (848)
Q Consensus 262 ~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~----~~~---~~~~~~L~~~l~----~~~v~vI~ 330 (848)
+.+... +.|.-..+++.+|..++...|+|+||||+|.+...+.. .+. ....|.|+..++ ..++++++
T Consensus 378 SEFvE~--~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a 455 (774)
T KOG0731|consen 378 SEFVEM--FVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLA 455 (774)
T ss_pred HHHHHH--hcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEe
Confidence 998854 44555889999999999999999999999999765521 222 235566665554 56699999
Q ss_pred eeChHHHHhhhhcChhhhc--ccC-CCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCChhh
Q 003094 331 ATTLDEYRKHIEKDPALER--RFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDK 407 (848)
Q Consensus 331 atn~~~~~~~~~~d~al~~--Rf~-~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~p~~ 407 (848)
+||+++ -+|++++| ||+ .|.++.|+...|.+|++.++.+. +....+..+..++.++.++.+. +
T Consensus 456 ~tnr~d-----~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~----~~~~e~~dl~~~a~~t~gf~ga-----d 521 (774)
T KOG0731|consen 456 ATNRPD-----ILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKK----KLDDEDVDLSKLASLTPGFSGA-----D 521 (774)
T ss_pred ccCCcc-----ccCHHhcCCCccccceeccCCchhhhHHHHHHHhhcc----CCCcchhhHHHHHhcCCCCcHH-----H
Confidence 999999 58999999 997 89999999999999999988742 3333455666688888887665 5
Q ss_pred HHHHHHHHhhH
Q 003094 408 AIDLIDEAGSR 418 (848)
Q Consensus 408 a~~ll~~a~~~ 418 (848)
...++.+|...
T Consensus 522 l~n~~neaa~~ 532 (774)
T KOG0731|consen 522 LANLCNEAALL 532 (774)
T ss_pred HHhhhhHHHHH
Confidence 55555555433
No 79
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=2.6e-18 Score=168.70 Aligned_cols=165 Identities=23% Similarity=0.342 Sum_probs=136.5
Q ss_pred CCCCccCChHHHHHHH-------------HHhccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeC
Q 003094 195 KLDPVVGRQPQIERVV-------------QILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDM 261 (848)
Q Consensus 195 ~ld~iiG~~~~~~~l~-------------~~l~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~ 261 (848)
+..++-|.+-+++++. +.++..+++++|+|||||||||++++++|+.- ...++.+..
T Consensus 153 sy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t----------~a~firvvg 222 (408)
T KOG0727|consen 153 SYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT----------TAAFIRVVG 222 (408)
T ss_pred cccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhcc----------chheeeecc
Confidence 3556777765555443 44567889999999999999999999999876 456888888
Q ss_pred CcccccccccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCC---CchHHHHHHHhhhhc-------CCceEEEEe
Q 003094 262 GLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAA---EGAIDAANILKPSLA-------RGELQCIGA 331 (848)
Q Consensus 262 ~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~---~~~~~~~~~L~~~l~-------~~~v~vI~a 331 (848)
+.+. .+|.|+-...++.+|..++...|.|+||||+|.+...+-+ ..+.+++.+|..++. ..++.+|.+
T Consensus 223 sefv--qkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvima 300 (408)
T KOG0727|consen 223 SEFV--QKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMA 300 (408)
T ss_pred HHHH--HHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEe
Confidence 8888 6799999999999999999999999999999999865422 235677888777775 356999999
Q ss_pred eChHHHHhhhhcChhhhc--ccC-CCcCCCCCHHHHHHHHHHHHHHHh
Q 003094 332 TTLDEYRKHIEKDPALER--RFQ-PVKVPEPSVDETIQILKGLRERYE 376 (848)
Q Consensus 332 tn~~~~~~~~~~d~al~~--Rf~-~i~~~~p~~~e~~~Il~~~~~~~~ 376 (848)
||+.+ .+||+|+| |++ .|+||.|+..++.-++..+..++.
T Consensus 301 tnrad-----tldpallrpgrldrkiefplpdrrqkrlvf~titskm~ 343 (408)
T KOG0727|consen 301 TNRAD-----TLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMN 343 (408)
T ss_pred cCccc-----ccCHhhcCCccccccccCCCCchhhhhhhHHhhhhccc
Confidence 99998 69999999 886 899999999999988888887653
No 80
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.78 E-value=2e-17 Score=189.57 Aligned_cols=201 Identities=19% Similarity=0.234 Sum_probs=156.2
Q ss_pred hhhhhhhcCCCCCccCChHHHHHHHHHhccCCCCCc-EEECCCCCcHHHHHHHHHHHhhCCCCCCC--------------
Q 003094 186 NLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNP-CLIGEPGVGKTAIAEGLAQRIASGDVPDT-------------- 250 (848)
Q Consensus 186 ~l~~~~~~~~ld~iiG~~~~~~~l~~~l~~~~~~~i-LL~GppGtGKT~la~~la~~l~~~~~~~~-------------- 250 (848)
-|.++|||.+|+++||++..++.|...+......|. ||+||+|||||++++.|++.+++......
T Consensus 5 vLarKYRPqtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~ 84 (830)
T PRK07003 5 VLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDE 84 (830)
T ss_pred hHHHHhCCCcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhc
Confidence 388999999999999999999999999998777776 89999999999999999999976321110
Q ss_pred CCCceEEEEeCCcccccccccchHHHHHHHHHHHHH----hCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcC--C
Q 003094 251 IEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIK----QSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR--G 324 (848)
Q Consensus 251 l~~~~v~~~~~~~l~~~~~~~g~~~~~l~~l~~~~~----~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~--~ 324 (848)
-....++++|..+- ++ ...++.+++.+. .+...|+||||+|.|. ....|.|++.||. .
T Consensus 85 G~h~DviEIDAas~------rg--VDdIReLIe~a~~~P~~gr~KVIIIDEah~LT--------~~A~NALLKtLEEPP~ 148 (830)
T PRK07003 85 GRFVDYVEMDAASN------RG--VDEMAALLERAVYAPVDARFKVYMIDEVHMLT--------NHAFNAMLKTLEEPPP 148 (830)
T ss_pred CCCceEEEeccccc------cc--HHHHHHHHHHHHhccccCCceEEEEeChhhCC--------HHHHHHHHHHHHhcCC
Confidence 01124555554321 11 123444555443 2345799999999994 3467888888874 5
Q ss_pred ceEEEEeeChHHHHhhhhcChhhhcccCCCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCC
Q 003094 325 ELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFL 404 (848)
Q Consensus 325 ~v~vI~atn~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~ 404 (848)
++.+|++||... .+.+.++|||..+.|..++.++..++|+.++.+ +++.++++.+..+++.+.|.+
T Consensus 149 ~v~FILaTtd~~-----KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~----EgI~id~eAL~lIA~~A~Gsm----- 214 (830)
T PRK07003 149 HVKFILATTDPQ-----KIPVTVLSRCLQFNLKQMPAGHIVSHLERILGE----ERIAFEPQALRLLARAAQGSM----- 214 (830)
T ss_pred CeEEEEEECChh-----hccchhhhheEEEecCCcCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH-----
Confidence 788999998876 678999999999999999999999999888763 678899999999999988864
Q ss_pred hhhHHHHHHHHhh
Q 003094 405 PDKAIDLIDEAGS 417 (848)
Q Consensus 405 p~~a~~ll~~a~~ 417 (848)
++++.+++.+..
T Consensus 215 -RdALsLLdQAia 226 (830)
T PRK07003 215 -RDALSLTDQAIA 226 (830)
T ss_pred -HHHHHHHHHHHH
Confidence 458899888764
No 81
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.77 E-value=2.3e-18 Score=194.14 Aligned_cols=176 Identities=22% Similarity=0.375 Sum_probs=132.4
Q ss_pred hhcCCCCCccCChHHHHHHHHHh-------------ccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEE
Q 003094 191 AEEGKLDPVVGRQPQIERVVQIL-------------GRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVI 257 (848)
Q Consensus 191 ~~~~~ld~iiG~~~~~~~l~~~l-------------~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~ 257 (848)
....++++|.|.+++++++.+.+ +.++++++|||||||||||++++++|+.+.............++
T Consensus 176 ~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl 255 (512)
T TIGR03689 176 VPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFL 255 (512)
T ss_pred CCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEE
Confidence 34467889999999998877754 23578899999999999999999999998542111000112233
Q ss_pred EEeCCcccccccccchHHHHHHHHHHHHHh----CCCeEEEEcccchhhhCCCCCch----HHHHHHHhhhhc----CCc
Q 003094 258 TLDMGLLVAGTKYRGEFEERLKKLMEEIKQ----SDEIILFIDEVHTLIGAGAAEGA----IDAANILKPSLA----RGE 325 (848)
Q Consensus 258 ~~~~~~l~~~~~~~g~~~~~l~~l~~~~~~----~~~~IL~IDEid~l~~~~~~~~~----~~~~~~L~~~l~----~~~ 325 (848)
.+....+. .+|.|+.+..++.+|+.++. +.|+||||||+|.+++.+..... ..+.+.|+..++ .++
T Consensus 256 ~v~~~eLl--~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ 333 (512)
T TIGR03689 256 NIKGPELL--NKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDN 333 (512)
T ss_pred eccchhhc--ccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCc
Confidence 33344444 56889999999999988875 36899999999999876543322 233455555554 467
Q ss_pred eEEEEeeChHHHHhhhhcChhhhc--ccC-CCcCCCCCHHHHHHHHHHHHH
Q 003094 326 LQCIGATTLDEYRKHIEKDPALER--RFQ-PVKVPEPSVDETIQILKGLRE 373 (848)
Q Consensus 326 v~vI~atn~~~~~~~~~~d~al~~--Rf~-~i~~~~p~~~e~~~Il~~~~~ 373 (848)
+++|++||.++ .+||++.| ||+ .|+|+.|+.+++.+||+.++.
T Consensus 334 ViVI~ATN~~d-----~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~ 379 (512)
T TIGR03689 334 VIVIGASNRED-----MIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLT 379 (512)
T ss_pred eEEEeccCChh-----hCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhh
Confidence 99999999998 68999999 998 799999999999999998775
No 82
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.77 E-value=2.9e-18 Score=174.39 Aligned_cols=194 Identities=21% Similarity=0.319 Sum_probs=139.8
Q ss_pred HHHHHHHhhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCC-CceE--Eeccc
Q 003094 522 LLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSE-EAMI--RLDMS 598 (848)
Q Consensus 522 l~~l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~-~~~i--~i~~~ 598 (848)
.+++++..++++.||+.++..+.+++.. + ...++|||||||||||+.|+++|+.+|+.+ .+.- ..|.+
T Consensus 27 teKYrPkt~de~~gQe~vV~~L~~a~~~-~--------~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaS 97 (346)
T KOG0989|consen 27 TEKYRPKTFDELAGQEHVVQVLKNALLR-R--------ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNAS 97 (346)
T ss_pred HHHhCCCcHHhhcchHHHHHHHHHHHhh-c--------CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccc
Confidence 3466777788999999999999999975 2 124699999999999999999999998722 1211 22222
Q ss_pred ccccccchhcccCCCCCCcccccccchhHHH------HcCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeec
Q 003094 599 EFMERHTVSKLIGSPPGYVGYTEGGQLTEAV------RRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDF 672 (848)
Q Consensus 599 ~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~------~~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~ 672 (848)
...+...+..=+. .+ ..+.... ...++.||+|||+|.++.++|++|.+.||+..
T Consensus 98 derGisvvr~Kik------~f---akl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s----------- 157 (346)
T KOG0989|consen 98 DERGISVVREKIK------NF---AKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFS----------- 157 (346)
T ss_pred ccccccchhhhhc------CH---HHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccc-----------
Confidence 2221110000000 00 0000000 01345899999999999999999999999833
Q ss_pred CCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHHHH
Q 003094 673 KNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIM 752 (848)
Q Consensus 673 ~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~~~ 752 (848)
.+++||+.+|+-+. +++.+.+|| ..+.|+++..+++...++.+
T Consensus 158 ~~trFiLIcnylsr------------------------------------ii~pi~SRC-~KfrFk~L~d~~iv~rL~~I 200 (346)
T KOG0989|consen 158 RTTRFILICNYLSR------------------------------------IIRPLVSRC-QKFRFKKLKDEDIVDRLEKI 200 (346)
T ss_pred cceEEEEEcCChhh------------------------------------CChHHHhhH-HHhcCCCcchHHHHHHHHHH
Confidence 67899999996665 447799999 88999999999988888766
Q ss_pred HHHHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHH
Q 003094 753 LKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIM 796 (848)
Q Consensus 753 l~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~ 796 (848)
..+ ..+.+++++++.|++ ...++||+++.
T Consensus 201 a~~---------E~v~~d~~al~~I~~------~S~GdLR~Ait 229 (346)
T KOG0989|consen 201 ASK---------EGVDIDDDALKLIAK------ISDGDLRRAIT 229 (346)
T ss_pred HHH---------hCCCCCHHHHHHHHH------HcCCcHHHHHH
Confidence 654 446699999999999 45677888876
No 83
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.77 E-value=5.7e-18 Score=195.69 Aligned_cols=228 Identities=19% Similarity=0.241 Sum_probs=178.0
Q ss_pred cccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhcccC
Q 003094 532 RVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIG 611 (848)
Q Consensus 532 ~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g 611 (848)
.++|.+..+..+.+.+...... ..++++.|++||||+++|++++........+|+.+||+.+......+.++|
T Consensus 139 ~lig~s~~~~~l~~~~~~~~~~-------~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~~~~lfg 211 (469)
T PRK10923 139 DIIGEAPAMQDVFRIIGRLSRS-------SISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFG 211 (469)
T ss_pred cceecCHHHHHHHHHHHHHhcc-------CCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHHHHHhcC
Confidence 4788888888888777654211 234899999999999999999999877889999999999877666778899
Q ss_pred CCCC-CcccccccchhHHHHcCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCchhhhc
Q 003094 612 SPPG-YVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEK 690 (848)
Q Consensus 612 ~~~g-~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~i~~ 690 (848)
...| +.|... .-.+.+..+.++.||||||+.+++..|..|+++++++.+...++......+++||+||+......
T Consensus 212 ~~~g~~~~~~~--~~~g~~~~a~~Gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~-- 287 (469)
T PRK10923 212 HEKGAFTGANT--IRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQR-- 287 (469)
T ss_pred CCCCCCCCCCc--CCCCCeeECCCCEEEEeccccCCHHHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCHHHH--
Confidence 8665 233221 11233455678899999999999999999999999999988777665567899999997433211
Q ss_pred cCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccC-eEEEcCCCCH--HHHHHHHHHHHHHHHHHHhcCCCeE
Q 003094 691 GGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLD-EMIVFRQLTK--LEVKEIADIMLKEVFDRLKTKDIEL 767 (848)
Q Consensus 691 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d-~~i~f~~l~~--~el~~I~~~~l~~~~~~~~~~~~~l 767 (848)
.-...|+++|++|+. ..|..+||.+ +|+..++.+++.++..++... ..
T Consensus 288 ---------------------------~~~~~~~~~L~~~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~--~~ 338 (469)
T PRK10923 288 ---------------------------VQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVE--AK 338 (469)
T ss_pred ---------------------------HHcCCchHHHHHHhcceeecCCCcccchhhHHHHHHHHHHHHHHHcCCC--CC
Confidence 112358899999995 4688899965 899999999999876654221 23
Q ss_pred eecHHHHHHHHHccCCCCCCchHHHHHHHHHHHH
Q 003094 768 QVTERFRERVVEEGYNPSYGARPLRRAIMRLLED 801 (848)
Q Consensus 768 ~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~l~~ 801 (848)
.+++++++.|.. |+|++|.|+|+++|++++..
T Consensus 339 ~~~~~a~~~L~~--~~wpgNv~eL~~~i~~~~~~ 370 (469)
T PRK10923 339 LLHPETEAALTR--LAWPGNVRQLENTCRWLTVM 370 (469)
T ss_pred CcCHHHHHHHHh--CCCCChHHHHHHHHHHHHHh
Confidence 589999999999 99999999999999988763
No 84
>CHL00176 ftsH cell division protein; Validated
Probab=99.76 E-value=1.3e-17 Score=194.44 Aligned_cols=199 Identities=24% Similarity=0.322 Sum_probs=150.6
Q ss_pred CCCCCccCChHHHHHHHHHh------------ccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeC
Q 003094 194 GKLDPVVGRQPQIERVVQIL------------GRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDM 261 (848)
Q Consensus 194 ~~ld~iiG~~~~~~~l~~~l------------~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~ 261 (848)
.+|++++|.++.++++.+++ +...++++||+||||||||++|+++|.++ +.+++.+++
T Consensus 180 ~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~----------~~p~i~is~ 249 (638)
T CHL00176 180 ITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA----------EVPFFSISG 249 (638)
T ss_pred CCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCeeeccH
Confidence 46899999998887766653 23456789999999999999999999987 567888888
Q ss_pred CcccccccccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCC---CchH---HHHHHHhhhh----cCCceEEEEe
Q 003094 262 GLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAA---EGAI---DAANILKPSL----ARGELQCIGA 331 (848)
Q Consensus 262 ~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~---~~~~---~~~~~L~~~l----~~~~v~vI~a 331 (848)
+.+. ..+.|.....++.+|..+....|+||||||+|.+...+.. .... ...+.|+..+ .+.++++|++
T Consensus 250 s~f~--~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaa 327 (638)
T CHL00176 250 SEFV--EMFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAA 327 (638)
T ss_pred HHHH--HHhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEe
Confidence 7765 3455666778899999999999999999999999754321 1222 2334444333 3567999999
Q ss_pred eChHHHHhhhhcChhhhc--ccC-CCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCChhhH
Q 003094 332 TTLDEYRKHIEKDPALER--RFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKA 408 (848)
Q Consensus 332 tn~~~~~~~~~~d~al~~--Rf~-~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~p~~a 408 (848)
||.++ .+|+++.| ||+ .|.|+.|+.++|.+||+.++.. .....+..+..++..+.+|.+ .+.
T Consensus 328 TN~~~-----~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~-----~~~~~d~~l~~lA~~t~G~sg-----aDL 392 (638)
T CHL00176 328 TNRVD-----ILDAALLRPGRFDRQITVSLPDREGRLDILKVHARN-----KKLSPDVSLELIARRTPGFSG-----ADL 392 (638)
T ss_pred cCchH-----hhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhh-----cccchhHHHHHHHhcCCCCCH-----HHH
Confidence 99988 58999998 897 8999999999999999988764 112245567788887777654 366
Q ss_pred HHHHHHHhhHH
Q 003094 409 IDLIDEAGSRV 419 (848)
Q Consensus 409 ~~ll~~a~~~~ 419 (848)
..++.+|...+
T Consensus 393 ~~lvneAal~a 403 (638)
T CHL00176 393 ANLLNEAAILT 403 (638)
T ss_pred HHHHHHHHHHH
Confidence 77777775443
No 85
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.76 E-value=3.7e-17 Score=164.64 Aligned_cols=193 Identities=23% Similarity=0.331 Sum_probs=148.0
Q ss_pred hhhhhhcCCCCCccCChHHHHHHHHHhcc-----CCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeC
Q 003094 187 LTKLAEEGKLDPVVGRQPQIERVVQILGR-----RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDM 261 (848)
Q Consensus 187 l~~~~~~~~ld~iiG~~~~~~~l~~~l~~-----~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~ 261 (848)
.....||+.|++.+|+++.++++.-.+.. ...-|+||+||||.||||+|..+|++++ ..+...+.
T Consensus 16 ~e~~lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emg----------vn~k~tsG 85 (332)
T COG2255 16 IERSLRPKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELG----------VNLKITSG 85 (332)
T ss_pred hhcccCcccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhc----------CCeEeccc
Confidence 33446899999999999999998776653 4456899999999999999999999994 33333332
Q ss_pred CcccccccccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcC------------------
Q 003094 262 GLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR------------------ 323 (848)
Q Consensus 262 ~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~------------------ 323 (848)
..+.. ...+..++..++.++ ||||||||++.+. +-++|.+.|+.
T Consensus 86 p~leK--------~gDlaaiLt~Le~~D--VLFIDEIHrl~~~--------vEE~LYpaMEDf~lDI~IG~gp~Arsv~l 147 (332)
T COG2255 86 PALEK--------PGDLAAILTNLEEGD--VLFIDEIHRLSPA--------VEEVLYPAMEDFRLDIIIGKGPAARSIRL 147 (332)
T ss_pred ccccC--------hhhHHHHHhcCCcCC--eEEEehhhhcChh--------HHHHhhhhhhheeEEEEEccCCccceEec
Confidence 22221 122445555555555 9999999999654 77888888862
Q ss_pred --CceEEEEeeChHHHHhhhhcChhhhcccC-CCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccc
Q 003094 324 --GELQCIGATTLDEYRKHIEKDPALERRFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYIS 400 (848)
Q Consensus 324 --~~v~vI~atn~~~~~~~~~~d~al~~Rf~-~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~ 400 (848)
..+.+||+|++.. .+...|+.||. ...+..++.++..+|+.+-.. ..++.++++....+++.+++.
T Consensus 148 dLppFTLIGATTr~G-----~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~----~l~i~i~~~~a~eIA~rSRGT-- 216 (332)
T COG2255 148 DLPPFTLIGATTRAG-----MLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAK----ILGIEIDEEAALEIARRSRGT-- 216 (332)
T ss_pred cCCCeeEeeeccccc-----cccchhHHhcCCeeeeecCCHHHHHHHHHHHHH----HhCCCCChHHHHHHHHhccCC--
Confidence 2389999999988 58999999997 778999999999999997765 457888999999999877654
Q ss_pred cCCChhhHHHHHHHHhhHHHHh
Q 003094 401 DRFLPDKAIDLIDEAGSRVRLR 422 (848)
Q Consensus 401 ~~~~p~~a~~ll~~a~~~~~~~ 422 (848)
|+-|..||+.....+.+.
T Consensus 217 ----PRIAnRLLrRVRDfa~V~ 234 (332)
T COG2255 217 ----PRIANRLLRRVRDFAQVK 234 (332)
T ss_pred ----cHHHHHHHHHHHHHHHHh
Confidence 778999998776655544
No 86
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.76 E-value=1.3e-17 Score=191.54 Aligned_cols=228 Identities=18% Similarity=0.208 Sum_probs=175.7
Q ss_pred cccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhcccC
Q 003094 532 RVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIG 611 (848)
Q Consensus 532 ~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g 611 (848)
.++|.+..++.+...+..... ...+++++|++||||+.+|+.++......+.+|+.+||..+.+....+.|||
T Consensus 140 ~lig~s~~~~~l~~~i~~~a~-------~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~~~lfg 212 (445)
T TIGR02915 140 GLITSSPGMQKICRTIEKIAP-------SDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFG 212 (445)
T ss_pred ceeecCHHHHHHHHHHHHHhC-------CCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHHHHHhcC
Confidence 467777777777777765421 1134899999999999999999998877788999999999877666677888
Q ss_pred CCCCCcccccccchhHHHHcCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCchhhhcc
Q 003094 612 SPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKG 691 (848)
Q Consensus 612 ~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~i~~~ 691 (848)
...|...... ....+.+..+.+++||||||+.+++.+|..|+++++++.+...++......++++|+||+......
T Consensus 213 ~~~~~~~~~~-~~~~g~~~~a~~gtl~l~~i~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~--- 288 (445)
T TIGR02915 213 YEKGAFTGAV-KQTLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRM--- 288 (445)
T ss_pred CCCCCcCCCc-cCCCCceeECCCCEEEEechhhCCHHHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHHHH---
Confidence 7544321111 112334556788999999999999999999999999999887666655567899999997443211
Q ss_pred CcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCe-EEEcCCCCH--HHHHHHHHHHHHHHHHHHhcCCCeEe
Q 003094 692 GRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDE-MIVFRQLTK--LEVKEIADIMLKEVFDRLKTKDIELQ 768 (848)
Q Consensus 692 ~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~-~i~f~~l~~--~el~~I~~~~l~~~~~~~~~~~~~l~ 768 (848)
.-...|+++|+.|+.. .|.+|||.+ +|+..+++.++.++..++... ...
T Consensus 289 --------------------------~~~~~~~~~L~~~l~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~--~~~ 340 (445)
T TIGR02915 289 --------------------------IAEGTFREDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFARELKRK--TKG 340 (445)
T ss_pred --------------------------HHcCCccHHHHHHhccceecCCCchhchhhHHHHHHHHHHHHHHHhCCC--CCC
Confidence 0123588999999854 589999965 799999999999987665322 245
Q ss_pred ecHHHHHHHHHccCCCCCCchHHHHHHHHHHH
Q 003094 769 VTERFRERVVEEGYNPSYGARPLRRAIMRLLE 800 (848)
Q Consensus 769 i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~l~ 800 (848)
+++++++.|.. |+|++|.|+|+++|++++.
T Consensus 341 ~~~~a~~~L~~--~~wpgNvreL~~~i~~a~~ 370 (445)
T TIGR02915 341 FTDDALRALEA--HAWPGNVRELENKVKRAVI 370 (445)
T ss_pred CCHHHHHHHHh--CCCCChHHHHHHHHHHHHH
Confidence 89999999999 9999999999999998875
No 87
>CHL00181 cbbX CbbX; Provisional
Probab=99.76 E-value=2e-17 Score=176.38 Aligned_cols=188 Identities=27% Similarity=0.335 Sum_probs=140.7
Q ss_pred CC-CccCChHHHHHHHHHhc------------c---CCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEE
Q 003094 196 LD-PVVGRQPQIERVVQILG------------R---RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITL 259 (848)
Q Consensus 196 ld-~iiG~~~~~~~l~~~l~------------~---~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~ 259 (848)
++ +++|.++++++|.++.. . .+..|++|+||||||||++|+++|+.+....+ +...+++++
T Consensus 21 l~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~---~~~~~~~~v 97 (287)
T CHL00181 21 LDEELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGY---IKKGHLLTV 97 (287)
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCC---CCCCceEEe
Confidence 44 69999998887765531 1 23456899999999999999999998754221 223458888
Q ss_pred eCCcccccccccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCC-CchHHHHHHHhhhhcC--CceEEEEeeChHH
Q 003094 260 DMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAA-EGAIDAANILKPSLAR--GELQCIGATTLDE 336 (848)
Q Consensus 260 ~~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~-~~~~~~~~~L~~~l~~--~~v~vI~atn~~~ 336 (848)
+.+.+. ..+.|+.+.....+++.+ .+.||||||+|.+.+.+.. ....+.++.|...++. +.++||++++...
T Consensus 98 ~~~~l~--~~~~g~~~~~~~~~l~~a---~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~ 172 (287)
T CHL00181 98 TRDDLV--GQYIGHTAPKTKEVLKKA---MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDR 172 (287)
T ss_pred cHHHHH--HHHhccchHHHHHHHHHc---cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHH
Confidence 877766 346676666666666654 3469999999999654322 2356778888888863 5689999998887
Q ss_pred HHhhhhcChhhhcccC-CCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhh
Q 003094 337 YRKHIEKDPALERRFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLS 395 (848)
Q Consensus 337 ~~~~~~~d~al~~Rf~-~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s 395 (848)
+..++..+|+|.+||. .|.|++|+.+++.+|+..++++ .+..++++....+....
T Consensus 173 ~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~----~~~~l~~~~~~~L~~~i 228 (287)
T CHL00181 173 MDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEE----QQYQLTPEAEKALLDYI 228 (287)
T ss_pred HHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHH----hcCCCChhHHHHHHHHH
Confidence 7777888999999997 8999999999999999998875 35667777766665543
No 88
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.75 E-value=1.2e-17 Score=189.12 Aligned_cols=201 Identities=19% Similarity=0.193 Sum_probs=156.0
Q ss_pred hhhhhhhcCCCCCccCChHHHHHHHHHhccCCCCCc-EEECCCCCcHHHHHHHHHHHhhCCCCC--C-------------
Q 003094 186 NLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNP-CLIGEPGVGKTAIAEGLAQRIASGDVP--D------------- 249 (848)
Q Consensus 186 ~l~~~~~~~~ld~iiG~~~~~~~l~~~l~~~~~~~i-LL~GppGtGKT~la~~la~~l~~~~~~--~------------- 249 (848)
.|..++||.+|+++||++..++.|.+.+......|. ||+||+|+|||++++.|++.+++.... .
T Consensus 5 vLarKYRPqtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC 84 (700)
T PRK12323 5 VLARKWRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRAC 84 (700)
T ss_pred hHHHHhCCCcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHH
Confidence 478899999999999999999999999998888886 899999999999999999999863110 0
Q ss_pred ----CCCCceEEEEeCCcccccccccchHHHHHHHHHHHHH----hCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhh
Q 003094 250 ----TIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIK----QSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSL 321 (848)
Q Consensus 250 ----~l~~~~v~~~~~~~l~~~~~~~g~~~~~l~~l~~~~~----~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l 321 (848)
......+++++..+-. .+ ..++.+++.+. .++..|+||||+|.|. ....|.|++.|
T Consensus 85 ~~I~aG~hpDviEIdAas~~----gV----DdIReLie~~~~~P~~gr~KViIIDEah~Ls--------~~AaNALLKTL 148 (700)
T PRK12323 85 TEIDAGRFVDYIEMDAASNR----GV----DEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT--------NHAFNAMLKTL 148 (700)
T ss_pred HHHHcCCCCcceEecccccC----CH----HHHHHHHHHHHhchhcCCceEEEEEChHhcC--------HHHHHHHHHhh
Confidence 0011245566543211 12 23444444433 3456799999999994 34788898899
Q ss_pred cC--CceEEEEeeChHHHHhhhhcChhhhcccCCCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhccc
Q 003094 322 AR--GELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYI 399 (848)
Q Consensus 322 ~~--~~v~vI~atn~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~ 399 (848)
|. +++.+|++||... .+.+.++|||+.+.|..++.++..+.++.++. ..++.++++++..+++.+.|-
T Consensus 149 EEPP~~v~FILaTtep~-----kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~----~Egi~~d~eAL~~IA~~A~Gs- 218 (700)
T PRK12323 149 EEPPEHVKFILATTDPQ-----KIPVTVLSRCLQFNLKQMPPGHIVSHLDAILG----EEGIAHEVNALRLLAQAAQGS- 218 (700)
T ss_pred ccCCCCceEEEEeCChH-----hhhhHHHHHHHhcccCCCChHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHcCCC-
Confidence 84 6788899998877 68899999999999999999999998888776 357788999999999988775
Q ss_pred ccCCChhhHHHHHHHHhh
Q 003094 400 SDRFLPDKAIDLIDEAGS 417 (848)
Q Consensus 400 ~~~~~p~~a~~ll~~a~~ 417 (848)
+++++.+++.+..
T Consensus 219 -----~RdALsLLdQaia 231 (700)
T PRK12323 219 -----MRDALSLTDQAIA 231 (700)
T ss_pred -----HHHHHHHHHHHHH
Confidence 4568888887654
No 89
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.75 E-value=9.9e-18 Score=186.05 Aligned_cols=203 Identities=20% Similarity=0.300 Sum_probs=137.8
Q ss_pred HHHHHHHhhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCC----ceEEe-c
Q 003094 522 LLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEE----AMIRL-D 596 (848)
Q Consensus 522 l~~l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~----~~i~i-~ 596 (848)
..++++..+++|+||++++..|..++...+. .+.+||+||+|||||++|+++|+.+.+... ++..+ .
T Consensus 9 ~~KyRP~~f~dvVGQe~iv~~L~~~i~~~ri--------~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~s 80 (484)
T PRK14956 9 SRKYRPQFFRDVIHQDLAIGALQNALKSGKI--------GHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTS 80 (484)
T ss_pred HHHhCCCCHHHHhChHHHHHHHHHHHHcCCC--------CeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcH
Confidence 3567778889999999999999888874321 134899999999999999999999865321 11111 1
Q ss_pred ccccccccchhcccCCC-CCCcccccccchhHHHH----cCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceee
Q 003094 597 MSEFMERHTVSKLIGSP-PGYVGYTEGGQLTEAVR----RRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVD 671 (848)
Q Consensus 597 ~~~~~~~~~~~~l~g~~-~g~~g~~~~~~l~~~~~----~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~ 671 (848)
|..+...... .++--. ....|.+..+.+.+.+. .+.+.|+||||+|+++.+.+|.||+.||+ +
T Consensus 81 C~~i~~g~~~-dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEE-----------P 148 (484)
T PRK14956 81 CLEITKGISS-DVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEE-----------P 148 (484)
T ss_pred HHHHHccCCc-cceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhc-----------C
Confidence 1111111000 011000 01122222233333333 24567999999999999999999999987 2
Q ss_pred cCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHHH
Q 003094 672 FKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADI 751 (848)
Q Consensus 672 ~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~~ 751 (848)
..+++||++|+... .+.+.+++|| ..+.|.+++.+++.+.+..
T Consensus 149 p~~viFILaTte~~------------------------------------kI~~TI~SRC-q~~~f~~ls~~~i~~~L~~ 191 (484)
T PRK14956 149 PAHIVFILATTEFH------------------------------------KIPETILSRC-QDFIFKKVPLSVLQDYSEK 191 (484)
T ss_pred CCceEEEeecCChh------------------------------------hccHHHHhhh-heeeecCCCHHHHHHHHHH
Confidence 36789999887322 2568999999 8999999999999988877
Q ss_pred HHHHHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHH
Q 003094 752 MLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIM 796 (848)
Q Consensus 752 ~l~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~ 796 (848)
.+.. ..+.++++++..|+.. +.+++|.++.
T Consensus 192 i~~~---------Egi~~e~eAL~~Ia~~------S~Gd~RdAL~ 221 (484)
T PRK14956 192 LCKI---------ENVQYDQEGLFWIAKK------GDGSVRDMLS 221 (484)
T ss_pred HHHH---------cCCCCCHHHHHHHHHH------cCChHHHHHH
Confidence 6654 2356899999999983 3344555554
No 90
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.75 E-value=2.2e-17 Score=190.69 Aligned_cols=221 Identities=28% Similarity=0.348 Sum_probs=154.0
Q ss_pred HHHHHhhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHh-------cCCCCceEEec
Q 003094 524 KMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYY-------FGSEEAMIRLD 596 (848)
Q Consensus 524 ~l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l-------~~~~~~~i~i~ 596 (848)
+++..-+++++||+.+++.+..++. + .. ..++||+||||||||++|+++++.. +..+.+|+.+|
T Consensus 58 ~~rp~~f~~iiGqs~~i~~l~~al~----~----~~-~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id 128 (531)
T TIGR02902 58 KTRPKSFDEIIGQEEGIKALKAALC----G----PN-PQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEID 128 (531)
T ss_pred hhCcCCHHHeeCcHHHHHHHHHHHh----C----CC-CceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEc
Confidence 3445557789999999988876532 1 11 2369999999999999999999753 22357899999
Q ss_pred cccc--ccccchhcccCCC--CCCccccc------ccchhHHHHcCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCC
Q 003094 597 MSEF--MERHTVSKLIGSP--PGYVGYTE------GGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSK 666 (848)
Q Consensus 597 ~~~~--~~~~~~~~l~g~~--~g~~g~~~------~~~l~~~~~~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~ 666 (848)
|... .+......++|+. +.|.|... ...-.+.+.++.+++||||||+.+++..|+.|+++||++.+....
T Consensus 129 ~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~~q~~LL~~Le~~~~~~~~ 208 (531)
T TIGR02902 129 ATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPVQMNKLLKVLEDRKVFLDS 208 (531)
T ss_pred cccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHHHHHHHHHHHHhCeeeecc
Confidence 9742 2222233455532 22222110 011234566788999999999999999999999999997754221
Q ss_pred ------Cc-----------eeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhh
Q 003094 667 ------GR-----------TVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLN 729 (848)
Q Consensus 667 ------g~-----------~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~ 729 (848)
+. .-...++++|++|+.... .++|++++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~-----------------------------------~L~paLrs 253 (531)
T TIGR02902 209 AYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPE-----------------------------------EIPPALRS 253 (531)
T ss_pred ccccccCcccccchhhhcccCcccceEEEEEecCCcc-----------------------------------cCChHHhh
Confidence 10 011346677777653221 25799999
Q ss_pred ccCeEEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHHHHHHHH
Q 003094 730 RLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDS 802 (848)
Q Consensus 730 R~d~~i~f~~l~~~el~~I~~~~l~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~l~~~ 802 (848)
|| ..+.|+||+.+|+.+|++..+++ ..+.+++++++.|.. |.| +.|++.+.++.+...+
T Consensus 254 R~-~~I~f~pL~~eei~~Il~~~a~k---------~~i~is~~al~~I~~--y~~--n~Rel~nll~~Aa~~A 312 (531)
T TIGR02902 254 RC-VEIFFRPLLDEEIKEIAKNAAEK---------IGINLEKHALELIVK--YAS--NGREAVNIVQLAAGIA 312 (531)
T ss_pred hh-heeeCCCCCHHHHHHHHHHHHHH---------cCCCcCHHHHHHHHH--hhh--hHHHHHHHHHHHHHHH
Confidence 99 78999999999999999887765 225689999999887 555 5699999888776533
No 91
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.75 E-value=1.3e-15 Score=185.59 Aligned_cols=180 Identities=20% Similarity=0.324 Sum_probs=126.2
Q ss_pred hccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcC-------CCCceEEeccccccc
Q 003094 530 HKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFG-------SEEAMIRLDMSEFME 602 (848)
Q Consensus 530 ~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~-------~~~~~i~i~~~~~~~ 602 (848)
.+.++|.+..++++...+.+. ...+++|+||||||||++|+.+|+.+.. .+..++.+|++.+..
T Consensus 178 ~~~~igr~~ei~~~~~~L~r~---------~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~a 248 (821)
T CHL00095 178 LDPVIGREKEIERVIQILGRR---------TKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLA 248 (821)
T ss_pred CCCCCCcHHHHHHHHHHHccc---------ccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhc
Confidence 356899999999988887643 1235899999999999999999998732 235677777765421
Q ss_pred ccchhcccCCCCCCcccccc--cchhHHHHcCCCeEEEEcCCCcCCh--------HHHHHHHhhhcCcEEEcCCCceeec
Q 003094 603 RHTVSKLIGSPPGYVGYTEG--GQLTEAVRRRPYTVVLFDEIEKAHP--------DVFNMMLQILEDGRLTDSKGRTVDF 672 (848)
Q Consensus 603 ~~~~~~l~g~~~g~~g~~~~--~~l~~~~~~~~~~Vl~lDEid~l~~--------~~~~~Ll~~le~g~~~~~~g~~v~~ 672 (848)
| ..|.|..+. ..+.+.+....+.||||||+|.+.. ++.+.|...+..|.+.
T Consensus 249 --------g--~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg~l~--------- 309 (821)
T CHL00095 249 --------G--TKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARGELQ--------- 309 (821)
T ss_pred --------c--CCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCCCcE---------
Confidence 2 135554332 3345555666778999999996632 4788899999886644
Q ss_pred CCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhh--cChhhhhccCeEEEcCCCCHHHHHHHHH
Q 003094 673 KNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQY--FRPEFLNRLDEMIVFRQLTKLEVKEIAD 750 (848)
Q Consensus 673 ~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~ll~R~d~~i~f~~l~~~el~~I~~ 750 (848)
+|.+|+. ++...+ -+|.|..|| ..|.+.+++.++...|++
T Consensus 310 ----~IgaTt~---------------------------------~ey~~~ie~D~aL~rRf-~~I~v~ep~~~e~~aILr 351 (821)
T CHL00095 310 ----CIGATTL---------------------------------DEYRKHIEKDPALERRF-QPVYVGEPSVEETIEILF 351 (821)
T ss_pred ----EEEeCCH---------------------------------HHHHHHHhcCHHHHhcc-eEEecCCCCHHHHHHHHH
Confidence 6777752 111121 368899999 678999999999999988
Q ss_pred HHHHHHHHHHhcCCCeEeecHHHHHHHHHc
Q 003094 751 IMLKEVFDRLKTKDIELQVTERFRERVVEE 780 (848)
Q Consensus 751 ~~l~~~~~~~~~~~~~l~i~~~a~~~l~~~ 780 (848)
.....+.+.. + +.++++++..+...
T Consensus 352 ~l~~~~e~~~---~--v~i~deal~~i~~l 376 (821)
T CHL00095 352 GLRSRYEKHH---N--LSISDKALEAAAKL 376 (821)
T ss_pred HHHHHHHHHc---C--CCCCHHHHHHHHHH
Confidence 7766544322 2 33889999888774
No 92
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=5.6e-17 Score=166.16 Aligned_cols=259 Identities=28% Similarity=0.429 Sum_probs=182.0
Q ss_pred HHHHHhhccccChHHHHHHHHHHHHHHHccCCCC------CCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecc
Q 003094 524 KMEETLHKRVIGQDEAVKAISRAIRRARVGLKNP------NRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDM 597 (848)
Q Consensus 524 ~l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~~------~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~ 597 (848)
.+-..|.+.++||+.+++.+.-+++..+....-+ --| -++|+.||+|+|||++||.||+.. +.||+.+..
T Consensus 8 eIV~eLd~yIIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~P-KNILMIGpTGVGKTEIARRLAkl~---~aPFiKVEA 83 (444)
T COG1220 8 EIVSELDRYIIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTP-KNILMIGPTGVGKTEIARRLAKLA---GAPFIKVEA 83 (444)
T ss_pred HHHHHHHhHhcCcHHHHHHHHHHHHHHHHHHhcCHHHhhccCc-cceEEECCCCCcHHHHHHHHHHHh---CCCeEEEEe
Confidence 3456788899999999999998886554322211 123 359999999999999999999997 899999887
Q ss_pred ccccccc----------------------------------------chhcccCCCCCCcccccc---------------
Q 003094 598 SEFMERH----------------------------------------TVSKLIGSPPGYVGYTEG--------------- 622 (848)
Q Consensus 598 ~~~~~~~----------------------------------------~~~~l~g~~~g~~g~~~~--------------- 622 (848)
..|.+-. .+..|++......|..+.
T Consensus 84 TKfTEVGYVGrDVesivRDLve~av~lvke~~~~~vk~~ae~~aeeRild~Lvp~~~~~~g~~~~~~~~~~~r~~~rkkL 163 (444)
T COG1220 84 TKFTEVGYVGRDVESIIRDLVEIAVKLVREEKIEKVKDKAEELAEERILDALVPPAKNFWGQSENKQESSATREKFRKKL 163 (444)
T ss_pred eeeeecccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcCcccccchHHHHHHHHHH
Confidence 7665310 011122221111111000
Q ss_pred ----------------------------------cchhH-----------------------------------------
Q 003094 623 ----------------------------------GQLTE----------------------------------------- 627 (848)
Q Consensus 623 ----------------------------------~~l~~----------------------------------------- 627 (848)
..+.+
T Consensus 164 r~GeLdd~eIeiev~~~~~~~~~i~~~pgme~~~~~l~~m~~~~~~~kkkkrk~~Vk~A~~~L~~eea~KLid~e~i~~e 243 (444)
T COG1220 164 REGELDDKEIEIEVADKGPPGFEIMGPPGMEEMTNNLQDMFGNLGGKKKKKRKLKVKEAKKLLIEEEADKLIDQEEIKQE 243 (444)
T ss_pred HcCCCCccEEEEEEeccCCCccccCCCCcHHHHHHHHHHHHHHhcCCCcceeeeeHHHHHHHHHHHHHHhhcCHHHHHHH
Confidence 00000
Q ss_pred HHHc-CCCeEEEEcCCCcCC------------hHHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCchhhhccCcc
Q 003094 628 AVRR-RPYTVVLFDEIEKAH------------PDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRR 694 (848)
Q Consensus 628 ~~~~-~~~~Vl~lDEid~l~------------~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~i~~~~~~ 694 (848)
++.. -..||||||||||.. ..+|.-||.++|...+.- ....+...+.+||++.-+-..
T Consensus 244 Ai~~aE~~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~T-KyG~VkTdHILFIasGAFh~s-------- 314 (444)
T COG1220 244 AIDAAEQNGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVST-KYGPVKTDHILFIASGAFHVA-------- 314 (444)
T ss_pred HHHHHHhcCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeec-cccccccceEEEEecCceecC--------
Confidence 0111 124699999999872 249999999999766653 333566678888888642111
Q ss_pred cccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHH----HHHHHHHHHHHhcCCCeEeec
Q 003094 695 IGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIA----DIMLKEVFDRLKTKDIELQVT 770 (848)
Q Consensus 695 ~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~----~~~l~~~~~~~~~~~~~l~i~ 770 (848)
.+ .-+-|+|-+||..-|.+.+||.+|+..|+ ...++++...+...++.+.|+
T Consensus 315 ------KP------------------SDLiPELQGRfPIRVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~Ft 370 (444)
T COG1220 315 ------KP------------------SDLIPELQGRFPIRVELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFT 370 (444)
T ss_pred ------Ch------------------hhcChhhcCCCceEEEcccCCHHHHHHHHcCcchHHHHHHHHHHhhcCeeEEec
Confidence 00 11459999999889999999999999999 567777777788889999999
Q ss_pred HHHHHHHHHccC-----CCCCCchHHHHHHHHHHHHHHHHHHHccccCCCCEEEEEEc
Q 003094 771 ERFRERVVEEGY-----NPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDVD 823 (848)
Q Consensus 771 ~~a~~~l~~~~~-----~~~~g~r~L~~~i~~~l~~~l~~~~l~~~~~~~~~~~v~~~ 823 (848)
+++++.|++.+| ..+.|+|-|...+++++++.-+++ ....|.++.|+.+
T Consensus 371 ddaI~~iAeiA~~vN~~~ENIGARRLhTvlErlLediSFeA----~d~~g~~v~Id~~ 424 (444)
T COG1220 371 DDAIKRIAEIAYQVNEKTENIGARRLHTVLERLLEDISFEA----PDMSGQKVTIDAE 424 (444)
T ss_pred HHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHhCccC----CcCCCCeEEEcHH
Confidence 999999998755 357899999999999888777666 5677888888643
No 93
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.75 E-value=2.7e-17 Score=185.58 Aligned_cols=194 Identities=29% Similarity=0.386 Sum_probs=151.8
Q ss_pred hhhhhhhcCCCCCccCChHHHHH---HHHHhccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCC
Q 003094 186 NLTKLAEEGKLDPVVGRQPQIER---VVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMG 262 (848)
Q Consensus 186 ~l~~~~~~~~ld~iiG~~~~~~~---l~~~l~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~ 262 (848)
+|.+++||.++++++|++..+.. +...+......+++|+||||||||++|+.+++.+ +.+++.++..
T Consensus 1 pla~~~RP~~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~----------~~~~~~l~a~ 70 (413)
T PRK13342 1 PLAERMRPKTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT----------DAPFEALSAV 70 (413)
T ss_pred ChhhhhCCCCHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEecc
Confidence 58899999999999999999776 8888888888899999999999999999999987 3456777654
Q ss_pred cccccccccchHHHHHHHHHHHHH----hCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCCceEEEEeeChHHHH
Q 003094 263 LLVAGTKYRGEFEERLKKLMEEIK----QSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATTLDEYR 338 (848)
Q Consensus 263 ~l~~~~~~~g~~~~~l~~l~~~~~----~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~atn~~~~~ 338 (848)
.. + ...++.+++.+. .+...+|||||+|.+. ...++.|++.++.+.+++|++|+....
T Consensus 71 ~~--~-------~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~--------~~~q~~LL~~le~~~iilI~att~n~~- 132 (413)
T PRK13342 71 TS--G-------VKDLREVIEEARQRRSAGRRTILFIDEIHRFN--------KAQQDALLPHVEDGTITLIGATTENPS- 132 (413)
T ss_pred cc--c-------HHHHHHHHHHHHHhhhcCCceEEEEechhhhC--------HHHHHHHHHHhhcCcEEEEEeCCCChh-
Confidence 21 1 122334444432 3456799999999984 346788899999999999998876443
Q ss_pred hhhhcChhhhcccCCCcCCCCCHHHHHHHHHHHHHHHhhhhcC-CCChHHHHHHHhhhhcccccCCChhhHHHHHHHHhh
Q 003094 339 KHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKL-RYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGS 417 (848)
Q Consensus 339 ~~~~~d~al~~Rf~~i~~~~p~~~e~~~Il~~~~~~~~~~~~~-~~s~~~l~~l~~~s~~~~~~~~~p~~a~~ll~~a~~ 417 (848)
..+++++.+||..+.|++++.++...+++..+.... .++ .++++++..+++.+.+. ++.++.+++.+..
T Consensus 133 --~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~--~~~i~i~~~al~~l~~~s~Gd------~R~aln~Le~~~~ 202 (413)
T PRK13342 133 --FEVNPALLSRAQVFELKPLSEEDIEQLLKRALEDKE--RGLVELDDEALDALARLANGD------ARRALNLLELAAL 202 (413)
T ss_pred --hhccHHHhccceeeEeCCCCHHHHHHHHHHHHHHhh--cCCCCCCHHHHHHHHHhCCCC------HHHHHHHHHHHHH
Confidence 368999999999999999999999999998776532 233 78899999999887553 4557777776653
No 94
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=3.1e-18 Score=171.62 Aligned_cols=175 Identities=25% Similarity=0.384 Sum_probs=143.8
Q ss_pred hhhhcCCCCCccCChHHHHHHHHH-------------hccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCce
Q 003094 189 KLAEEGKLDPVVGRQPQIERVVQI-------------LGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKK 255 (848)
Q Consensus 189 ~~~~~~~ld~iiG~~~~~~~l~~~-------------l~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~ 255 (848)
+++...++.++-|.+.+++++.+. ++.+++.+++|||+||||||.+|+++|+.- .+.
T Consensus 177 eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqT----------SAT 246 (440)
T KOG0726|consen 177 EKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQT----------SAT 246 (440)
T ss_pred ccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhccc----------chh
Confidence 334445788999999999887765 456889999999999999999999999876 355
Q ss_pred EEEEeCCcccccccccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCC---CCCchHHHHHHHhhhhc-------CCc
Q 003094 256 VITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAG---AAEGAIDAANILKPSLA-------RGE 325 (848)
Q Consensus 256 v~~~~~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~---~~~~~~~~~~~L~~~l~-------~~~ 325 (848)
++.+-.+.++ .+|.|+-...++.+|..+....|+|+||||||.+-..+ ++.+..+++..++.+++ ++.
T Consensus 247 FlRvvGseLi--QkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgD 324 (440)
T KOG0726|consen 247 FLRVVGSELI--QKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGD 324 (440)
T ss_pred hhhhhhHHHH--HHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCC
Confidence 6677777777 67999999999999999999999999999999986542 34456667766666654 678
Q ss_pred eEEEEeeChHHHHhhhhcChhhhc--ccC-CCcCCCCCHHHHHHHHHHHHHHHhhhhc
Q 003094 326 LQCIGATTLDEYRKHIEKDPALER--RFQ-PVKVPEPSVDETIQILKGLRERYEIHHK 380 (848)
Q Consensus 326 v~vI~atn~~~~~~~~~~d~al~~--Rf~-~i~~~~p~~~e~~~Il~~~~~~~~~~~~ 380 (848)
+.||.+||..+ .+||+|.| |.+ .|+|+.|+...+..|+..+..++.....
T Consensus 325 vKvimATnrie-----~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~d 377 (440)
T KOG0726|consen 325 VKVIMATNRIE-----TLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAED 377 (440)
T ss_pred eEEEEeccccc-----ccCHhhcCCCccccccccCCCchhhhceeEEEeecccchhcc
Confidence 99999999998 79999999 886 8999999999999999887765544433
No 95
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=99.74 E-value=8.2e-17 Score=188.30 Aligned_cols=150 Identities=29% Similarity=0.400 Sum_probs=111.1
Q ss_pred EEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhcccCCCCCCccccccc-------chhHHHHcCCCeE
Q 003094 564 FIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGG-------QLTEAVRRRPYTV 636 (848)
Q Consensus 564 lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~~g~~~~~-------~l~~~~~~~~~~V 636 (848)
+||.|.||+|||++..++|+.. +..++++|+++.. ..-.|+|+... ..+++ .+..+++. +++
T Consensus 1546 ilLEGsPGVGKTSlItaLAr~t---G~kliRINLSeQT---dL~DLfGsd~P---ve~~Gef~w~dapfL~amr~--G~W 1614 (4600)
T COG5271 1546 ILLEGSPGVGKTSLITALARKT---GKKLIRINLSEQT---DLCDLFGSDLP---VEEGGEFRWMDAPFLHAMRD--GGW 1614 (4600)
T ss_pred eeecCCCCccHHHHHHHHHHHh---cCceEEeeccccc---hHHHHhCCCCC---cccCceeEecccHHHHHhhc--CCE
Confidence 8999999999999999999998 8899999999874 45678887421 11222 34455554 459
Q ss_pred EEEcCCCcCChHHHHHHHhhhcCc-EEEcCC-Ccee-ecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHH
Q 003094 637 VLFDEIEKAHPDVFNMMLQILEDG-RLTDSK-GRTV-DFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKS 713 (848)
Q Consensus 637 l~lDEid~l~~~~~~~Ll~~le~g-~~~~~~-g~~v-~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~ 713 (848)
|++||++-++.+|++.|...++.. +...++ ...+ -++|++++++-|.-.. ++
T Consensus 1615 VlLDEiNLaSQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~q----gg--------------------- 1669 (4600)
T COG5271 1615 VLLDEINLASQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQ----GG--------------------- 1669 (4600)
T ss_pred EEeehhhhhHHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhc----CC---------------------
Confidence 999999999999999999999863 221111 1122 2468888888874321 11
Q ss_pred HHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHHHHHHH
Q 003094 714 LVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKE 755 (848)
Q Consensus 714 ~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~~~l~~ 755 (848)
.++.++..|++|| .+|....|+.+|+..|+..+..+
T Consensus 1670 -----GRKgLPkSF~nRF-svV~~d~lt~dDi~~Ia~~~yp~ 1705 (4600)
T COG5271 1670 -----GRKGLPKSFLNRF-SVVKMDGLTTDDITHIANKMYPQ 1705 (4600)
T ss_pred -----CcccCCHHHhhhh-heEEecccccchHHHHHHhhCCc
Confidence 1234788999999 88999999999999999776654
No 96
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.74 E-value=2.7e-17 Score=182.92 Aligned_cols=199 Identities=26% Similarity=0.376 Sum_probs=148.4
Q ss_pred CCCCCccCChHHHHHHHHHhc-------------cCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEe
Q 003094 194 GKLDPVVGRQPQIERVVQILG-------------RRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLD 260 (848)
Q Consensus 194 ~~ld~iiG~~~~~~~l~~~l~-------------~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~ 260 (848)
..++++.|.+++++++.+.+. ...+.++||+||||||||++|+++++.+ +.+++.+.
T Consensus 119 ~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l----------~~~~~~v~ 188 (364)
T TIGR01242 119 VSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET----------NATFIRVV 188 (364)
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhC----------CCCEEecc
Confidence 457789999999999887653 2356789999999999999999999988 34566666
Q ss_pred CCcccccccccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCC---chHHHHHHHhhhh---c----CCceEEEE
Q 003094 261 MGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAE---GAIDAANILKPSL---A----RGELQCIG 330 (848)
Q Consensus 261 ~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~---~~~~~~~~L~~~l---~----~~~v~vI~ 330 (848)
...+. .++.|+....++.++..+....|+||||||+|.+...+... +.......+..++ + .+++.+|+
T Consensus 189 ~~~l~--~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ 266 (364)
T TIGR01242 189 GSELV--RKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIA 266 (364)
T ss_pred hHHHH--HHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEE
Confidence 55554 45677888888999998888889999999999997543221 2233333333333 2 45799999
Q ss_pred eeChHHHHhhhhcChhhhc--ccC-CCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCCh-HHHHHHHhhhhcccccCCChh
Q 003094 331 ATTLDEYRKHIEKDPALER--RFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTD-EALVSAAQLSYQYISDRFLPD 406 (848)
Q Consensus 331 atn~~~~~~~~~~d~al~~--Rf~-~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~-~~l~~l~~~s~~~~~~~~~p~ 406 (848)
+||..+ .+|+++.+ ||+ .|.|+.|+.++|.+|++.+..+. .+.+ ..+..++..+.+|.+ .
T Consensus 267 ttn~~~-----~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~------~l~~~~~~~~la~~t~g~sg-----~ 330 (364)
T TIGR01242 267 ATNRPD-----ILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKM------KLAEDVDLEAIAKMTEGASG-----A 330 (364)
T ss_pred ecCChh-----hCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcC------CCCccCCHHHHHHHcCCCCH-----H
Confidence 999987 68999987 887 89999999999999999876542 2222 246778888877654 3
Q ss_pred hHHHHHHHHhhHHH
Q 003094 407 KAIDLIDEAGSRVR 420 (848)
Q Consensus 407 ~a~~ll~~a~~~~~ 420 (848)
+...++.+|...+-
T Consensus 331 dl~~l~~~A~~~a~ 344 (364)
T TIGR01242 331 DLKAICTEAGMFAI 344 (364)
T ss_pred HHHHHHHHHHHHHH
Confidence 56677777766553
No 97
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.74 E-value=2.2e-17 Score=166.28 Aligned_cols=187 Identities=19% Similarity=0.274 Sum_probs=140.4
Q ss_pred HHHHHhhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccc
Q 003094 524 KMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMER 603 (848)
Q Consensus 524 ~l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~ 603 (848)
.+++..+++++||+.+++++.-.++.++.. +..+.|+||+||||.|||+||..||+.+ +.++-......+..
T Consensus 19 ~lRP~~l~efiGQ~~vk~~L~ifI~AAk~r----~e~lDHvLl~GPPGlGKTTLA~IIA~Em---gvn~k~tsGp~leK- 90 (332)
T COG2255 19 SLRPKTLDEFIGQEKVKEQLQIFIKAAKKR----GEALDHVLLFGPPGLGKTTLAHIIANEL---GVNLKITSGPALEK- 90 (332)
T ss_pred ccCcccHHHhcChHHHHHHHHHHHHHHHhc----CCCcCeEEeeCCCCCcHHHHHHHHHHHh---cCCeEecccccccC-
Confidence 466777889999999999999999888654 4566789999999999999999999998 44443333222211
Q ss_pred cchhcccCCCCCCcccccccchhHHHHc-CCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEc-------CCCceeecCCe
Q 003094 604 HTVSKLIGSPPGYVGYTEGGQLTEAVRR-RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTD-------SKGRTVDFKNT 675 (848)
Q Consensus 604 ~~~~~l~g~~~g~~g~~~~~~l~~~~~~-~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~-------~~g~~v~~~~~ 675 (848)
.+.+...+.. .++.|||||||+.+++.+-+.|+.+||+.++.- +...+++.+.+
T Consensus 91 ------------------~gDlaaiLt~Le~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppF 152 (332)
T COG2255 91 ------------------PGDLAAILTNLEEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPF 152 (332)
T ss_pred ------------------hhhHHHHHhcCCcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCe
Confidence 1333333332 456799999999999999999999999987642 11234556677
Q ss_pred EEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHHHHHHH
Q 003094 676 LLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKE 755 (848)
Q Consensus 676 iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~~~l~~ 755 (848)
.+|.+|.... .+..+|.+||..+..+..|+.+|+.+|+.+.-..
T Consensus 153 TLIGATTr~G------------------------------------~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~ 196 (332)
T COG2255 153 TLIGATTRAG------------------------------------MLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKI 196 (332)
T ss_pred eEeeeccccc------------------------------------cccchhHHhcCCeeeeecCCHHHHHHHHHHHHHH
Confidence 7776664222 2567899999999999999999999999766543
Q ss_pred HHHHHhcCCCeEeecHHHHHHHHHcc
Q 003094 756 VFDRLKTKDIELQVTERFRERVVEEG 781 (848)
Q Consensus 756 ~~~~~~~~~~~l~i~~~a~~~l~~~~ 781 (848)
..+++++++...|+..+
T Consensus 197 ---------l~i~i~~~~a~eIA~rS 213 (332)
T COG2255 197 ---------LGIEIDEEAALEIARRS 213 (332)
T ss_pred ---------hCCCCChHHHHHHHHhc
Confidence 34668889988998853
No 98
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.74 E-value=1.5e-16 Score=180.86 Aligned_cols=201 Identities=22% Similarity=0.236 Sum_probs=155.7
Q ss_pred hhhhhhhcCCCCCccCChHHHHHHHHHhccCCCCCc-EEECCCCCcHHHHHHHHHHHhhCCCCCC--------------C
Q 003094 186 NLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNP-CLIGEPGVGKTAIAEGLAQRIASGDVPD--------------T 250 (848)
Q Consensus 186 ~l~~~~~~~~ld~iiG~~~~~~~l~~~l~~~~~~~i-LL~GppGtGKT~la~~la~~l~~~~~~~--------------~ 250 (848)
.|..++||.+|++++|++..++.|...+......|. ||+||+|+|||++|+.+|+.+++...+. .
T Consensus 4 ~LarKyRPktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~ 83 (702)
T PRK14960 4 VLARKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNE 83 (702)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhc
Confidence 478899999999999999999999999988776665 8999999999999999999997632211 1
Q ss_pred CCCceEEEEeCCcccccccccchHHHHHHHHHHHHH----hCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcC--C
Q 003094 251 IEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIK----QSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR--G 324 (848)
Q Consensus 251 l~~~~v~~~~~~~l~~~~~~~g~~~~~l~~l~~~~~----~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~--~ 324 (848)
.....++.++.++-. + ...++.+++.+. .++..|+||||+|.|. ....+.|++.++. +
T Consensus 84 g~hpDviEIDAAs~~------~--VddIReli~~~~y~P~~gk~KV~IIDEVh~LS--------~~A~NALLKtLEEPP~ 147 (702)
T PRK14960 84 GRFIDLIEIDAASRT------K--VEDTRELLDNVPYAPTQGRFKVYLIDEVHMLS--------THSFNALLKTLEEPPE 147 (702)
T ss_pred CCCCceEEecccccC------C--HHHHHHHHHHHhhhhhcCCcEEEEEechHhcC--------HHHHHHHHHHHhcCCC
Confidence 122356666654221 1 233455555442 2446799999999994 3468888888885 6
Q ss_pred ceEEEEeeChHHHHhhhhcChhhhcccCCCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCC
Q 003094 325 ELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFL 404 (848)
Q Consensus 325 ~v~vI~atn~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~ 404 (848)
.+.+|++|+... .+.+.+++||..+.|.+++.++..+.++.++++ .++.++++++..+++.+.|-
T Consensus 148 ~v~FILaTtd~~-----kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~k----EgI~id~eAL~~IA~~S~Gd------ 212 (702)
T PRK14960 148 HVKFLFATTDPQ-----KLPITVISRCLQFTLRPLAVDEITKHLGAILEK----EQIAADQDAIWQIAESAQGS------ 212 (702)
T ss_pred CcEEEEEECChH-----hhhHHHHHhhheeeccCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC------
Confidence 678888887765 467899999999999999999999999888774 57889999999999988765
Q ss_pred hhhHHHHHHHHhh
Q 003094 405 PDKAIDLIDEAGS 417 (848)
Q Consensus 405 p~~a~~ll~~a~~ 417 (848)
.+.++.+++.+++
T Consensus 213 LRdALnLLDQaIa 225 (702)
T PRK14960 213 LRDALSLTDQAIA 225 (702)
T ss_pred HHHHHHHHHHHHH
Confidence 4458888888765
No 99
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.74 E-value=4.7e-17 Score=190.06 Aligned_cols=201 Identities=20% Similarity=0.234 Sum_probs=154.9
Q ss_pred hhhhhhhhcCCCCCccCChHHHHHHHHHhccCCCCCc-EEECCCCCcHHHHHHHHHHHhhCCCCCC--------------
Q 003094 185 TNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNP-CLIGEPGVGKTAIAEGLAQRIASGDVPD-------------- 249 (848)
Q Consensus 185 ~~l~~~~~~~~ld~iiG~~~~~~~l~~~l~~~~~~~i-LL~GppGtGKT~la~~la~~l~~~~~~~-------------- 249 (848)
..|.+++||.+|++++|++..++.|...+..+...|. ||+||||||||++|+.+|+.+.+.....
T Consensus 4 ~~LaeKyRP~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~ 83 (944)
T PRK14949 4 QVLARKWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIA 83 (944)
T ss_pred hhHHHHhCCCCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHh
Confidence 3588999999999999999999999999988888886 8999999999999999999998642210
Q ss_pred CCCCceEEEEeCCcccccccccchHHHHHHHHHHHHH----hCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcC--
Q 003094 250 TIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIK----QSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR-- 323 (848)
Q Consensus 250 ~l~~~~v~~~~~~~l~~~~~~~g~~~~~l~~l~~~~~----~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~-- 323 (848)
......+++++..+. .+ ...++.+.+.+. .+...|+||||+|.|. .+.++.|++.++.
T Consensus 84 ~g~~~DviEidAas~------~k--VDdIReLie~v~~~P~~gk~KViIIDEAh~LT--------~eAqNALLKtLEEPP 147 (944)
T PRK14949 84 QGRFVDLIEVDAASR------TK--VDDTRELLDNVQYRPSRGRFKVYLIDEVHMLS--------RSSFNALLKTLEEPP 147 (944)
T ss_pred cCCCceEEEeccccc------cC--HHHHHHHHHHHHhhhhcCCcEEEEEechHhcC--------HHHHHHHHHHHhccC
Confidence 001122344433211 11 122344444433 3456799999999994 5588999999984
Q ss_pred CceEEEEeeChHHHHhhhhcChhhhcccCCCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCC
Q 003094 324 GELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRF 403 (848)
Q Consensus 324 ~~v~vI~atn~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~ 403 (848)
+.+.+|++|+... .+.+.+++||..+.|.+++.++....++..+.. .++.++++++..++..+.|.
T Consensus 148 ~~vrFILaTTe~~-----kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~----EgI~~edeAL~lIA~~S~Gd----- 213 (944)
T PRK14949 148 EHVKFLLATTDPQ-----KLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQ----EQLPFEAEALTLLAKAANGS----- 213 (944)
T ss_pred CCeEEEEECCCch-----hchHHHHHhheEEeCCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC-----
Confidence 6788888888776 578899999999999999999999988887764 47889999999999998886
Q ss_pred ChhhHHHHHHHHh
Q 003094 404 LPDKAIDLIDEAG 416 (848)
Q Consensus 404 ~p~~a~~ll~~a~ 416 (848)
+++++.+++.+.
T Consensus 214 -~R~ALnLLdQal 225 (944)
T PRK14949 214 -MRDALSLTDQAI 225 (944)
T ss_pred -HHHHHHHHHHHH
Confidence 456888888766
No 100
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.74 E-value=2e-17 Score=189.56 Aligned_cols=193 Identities=19% Similarity=0.252 Sum_probs=134.6
Q ss_pred HHHHHHHhhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCC----CceE-Eec
Q 003094 522 LLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSE----EAMI-RLD 596 (848)
Q Consensus 522 l~~l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~----~~~i-~i~ 596 (848)
.++++...+++|+||+++++.|.+.+... +..+.+||+||+|||||++|+++++.+++.. .++. +-+
T Consensus 7 arKYRPqtFdEVIGQe~Vv~~L~~aL~~g--------RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~s 78 (830)
T PRK07003 7 ARKWRPKDFASLVGQEHVVRALTHALDGG--------RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRA 78 (830)
T ss_pred HHHhCCCcHHHHcCcHHHHHHHHHHHhcC--------CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHH
Confidence 35677888999999999999999887633 2223479999999999999999999996532 1221 112
Q ss_pred ccccccccchhcccC-CCCCCcccccccchhHHHH----cCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceee
Q 003094 597 MSEFMERHTVSKLIG-SPPGYVGYTEGGQLTEAVR----RRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVD 671 (848)
Q Consensus 597 ~~~~~~~~~~~~l~g-~~~g~~g~~~~~~l~~~~~----~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~ 671 (848)
|..+...... +++- ......|.++.+.+.+.+. .+.+.|+||||+|+++...+|.||+.||+.
T Consensus 79 Cr~I~~G~h~-DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEP----------- 146 (830)
T PRK07003 79 CREIDEGRFV-DYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEP----------- 146 (830)
T ss_pred HHHHhcCCCc-eEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhc-----------
Confidence 2222221111 1111 0001122222223333332 245789999999999999999999999983
Q ss_pred cCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHHH
Q 003094 672 FKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADI 751 (848)
Q Consensus 672 ~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~~ 751 (848)
..+++||++||...+ +.+.+++|| ..+.|.+++.+++.+.+..
T Consensus 147 P~~v~FILaTtd~~K------------------------------------Ip~TIrSRC-q~f~Fk~Ls~eeIv~~L~~ 189 (830)
T PRK07003 147 PPHVKFILATTDPQK------------------------------------IPVTVLSRC-LQFNLKQMPAGHIVSHLER 189 (830)
T ss_pred CCCeEEEEEECChhh------------------------------------ccchhhhhe-EEEecCCcCHHHHHHHHHH
Confidence 368899999984332 558899999 9999999999999999988
Q ss_pred HHHHHHHHHhcCCCeEeecHHHHHHHHHc
Q 003094 752 MLKEVFDRLKTKDIELQVTERFRERVVEE 780 (848)
Q Consensus 752 ~l~~~~~~~~~~~~~l~i~~~a~~~l~~~ 780 (848)
++.. ..+.++++++..|+..
T Consensus 190 Il~~---------EgI~id~eAL~lIA~~ 209 (830)
T PRK07003 190 ILGE---------ERIAFEPQALRLLARA 209 (830)
T ss_pred HHHH---------cCCCCCHHHHHHHHHH
Confidence 7764 2355899999999883
No 101
>PLN03025 replication factor C subunit; Provisional
Probab=99.73 E-value=4.8e-17 Score=177.59 Aligned_cols=196 Identities=19% Similarity=0.227 Sum_probs=146.9
Q ss_pred hhhhhhhcCCCCCccCChHHHHHHHHHhccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCccc
Q 003094 186 NLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLV 265 (848)
Q Consensus 186 ~l~~~~~~~~ld~iiG~~~~~~~l~~~l~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~ 265 (848)
+|.+++||.++++++|+++.++.|..++.....+|+||+||||||||++|+++|+.+..... ...+++++.++..
T Consensus 2 ~w~~kyrP~~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~-----~~~~~eln~sd~~ 76 (319)
T PLN03025 2 PWVEKYRPTKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNY-----KEAVLELNASDDR 76 (319)
T ss_pred ChhhhcCCCCHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcccC-----ccceeeecccccc
Confidence 68999999999999999999999999888888889999999999999999999999854321 1235556554332
Q ss_pred ccccccchHHHHHHHHHHHH---HhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcC--CceEEEEeeChHHHHhh
Q 003094 266 AGTKYRGEFEERLKKLMEEI---KQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR--GELQCIGATTLDEYRKH 340 (848)
Q Consensus 266 ~~~~~~g~~~~~l~~l~~~~---~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~atn~~~~~~~ 340 (848)
. .......++...... ..+...|++|||+|.+.. ..++.|+..++. ....+|.+||...
T Consensus 77 ~----~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~--------~aq~aL~~~lE~~~~~t~~il~~n~~~---- 140 (319)
T PLN03025 77 G----IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTS--------GAQQALRRTMEIYSNTTRFALACNTSS---- 140 (319)
T ss_pred c----HHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCH--------HHHHHHHHHHhcccCCceEEEEeCCcc----
Confidence 1 112222222211110 013357999999999953 367888888873 4466777887665
Q ss_pred hhcChhhhcccCCCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCChhhHHHHHH
Q 003094 341 IEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLID 413 (848)
Q Consensus 341 ~~~d~al~~Rf~~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~p~~a~~ll~ 413 (848)
.+.+++.+|+..++|++|+.++....++..+++ .++.++++++..++..+.+.+ +.++..|+
T Consensus 141 -~i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~~~----egi~i~~~~l~~i~~~~~gDl------R~aln~Lq 202 (319)
T PLN03025 141 -KIIEPIQSRCAIVRFSRLSDQEILGRLMKVVEA----EKVPYVPEGLEAIIFTADGDM------RQALNNLQ 202 (319)
T ss_pred -ccchhHHHhhhcccCCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH------HHHHHHHH
Confidence 578899999999999999999999999888763 688899999999998877643 34666666
No 102
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.73 E-value=7.5e-17 Score=185.91 Aligned_cols=227 Identities=18% Similarity=0.238 Sum_probs=174.8
Q ss_pred cccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhcccC
Q 003094 532 RVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIG 611 (848)
Q Consensus 532 ~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g 611 (848)
.++|.+..+..+.+.+..... ...++++.|++||||+++|++++......+.+|+.+||..+......+.|||
T Consensus 144 ~ii~~S~~~~~~~~~~~~~a~-------~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lfg 216 (457)
T PRK11361 144 HILTNSPAMMDICKDTAKIAL-------SQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFG 216 (457)
T ss_pred ceecccHHHhHHHHHHHHHcC-------CCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhcC
Confidence 467777777777777665532 1235999999999999999999998877789999999999977666778888
Q ss_pred CCCCCc-ccccccchhHHHHcCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCchhhhc
Q 003094 612 SPPGYV-GYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEK 690 (848)
Q Consensus 612 ~~~g~~-g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~i~~ 690 (848)
...+.. |... .-.+.+..+.+++||||||+.+++.+|..|+++++++.+...++......++++|+|||.......
T Consensus 217 ~~~~~~~~~~~--~~~g~~~~a~~gtl~ld~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~~~~- 293 (457)
T PRK11361 217 HEKGAFTGAQT--LRQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMV- 293 (457)
T ss_pred CCCCCCCCCCC--CCCCceEECCCCEEEEechhhCCHHHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHHHHH-
Confidence 754432 2211 112345567789999999999999999999999999988766665555668999999984432111
Q ss_pred cCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCe-EEEcCCCCH--HHHHHHHHHHHHHHHHHHhcCCCeE
Q 003094 691 GGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDE-MIVFRQLTK--LEVKEIADIMLKEVFDRLKTKDIEL 767 (848)
Q Consensus 691 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~-~i~f~~l~~--~el~~I~~~~l~~~~~~~~~~~~~l 767 (848)
-...|+++|+.|+.. .|..+||.+ +|+..++..++.++..+... ...
T Consensus 294 ----------------------------~~g~~~~~l~~~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~--~~~ 343 (457)
T PRK11361 294 ----------------------------KEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQR--DII 343 (457)
T ss_pred ----------------------------HcCCchHHHHHHhccceecCCChhhchhhHHHHHHHHHHHHHHHcCC--CCC
Confidence 113478899999854 488899964 88999999999987665422 124
Q ss_pred eecHHHHHHHHHccCCCCCCchHHHHHHHHHHH
Q 003094 768 QVTERFRERVVEEGYNPSYGARPLRRAIMRLLE 800 (848)
Q Consensus 768 ~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~l~ 800 (848)
.+++++++.|.. |+|++|.|+|++.|++++.
T Consensus 344 ~~~~~a~~~L~~--~~wpgNv~eL~~~~~~~~~ 374 (457)
T PRK11361 344 DIDPMAMSLLTA--WSWPGNIRELSNVIERAVV 374 (457)
T ss_pred CcCHHHHHHHHc--CCCCCcHHHHHHHHHHHHH
Confidence 589999999999 9999999999999998775
No 103
>PRK15115 response regulator GlrR; Provisional
Probab=99.73 E-value=6.8e-17 Score=185.45 Aligned_cols=228 Identities=15% Similarity=0.183 Sum_probs=170.9
Q ss_pred cccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhcccC
Q 003094 532 RVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIG 611 (848)
Q Consensus 532 ~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g 611 (848)
.++|.+..+..+.+.+..... ...+++++|++||||+++|+++++.....+.+|+.+||..+.+....+.|+|
T Consensus 135 ~lig~s~~~~~~~~~~~~~a~-------~~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~lfg 207 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVAQ-------SDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFG 207 (444)
T ss_pred cccccCHHHHHHHHHHHhhcc-------CCCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHHhcC
Confidence 356666666655555543311 1124899999999999999999999877788999999999877666667888
Q ss_pred CCCCCcccccccchhHHHHcCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCchhhhcc
Q 003094 612 SPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKG 691 (848)
Q Consensus 612 ~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~i~~~ 691 (848)
...|...... ....+.+..+.+++||||||+.+++..|..|+++++++.+...++......++++|+||+....
T Consensus 208 ~~~~~~~~~~-~~~~g~~~~a~~gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~l~----- 281 (444)
T PRK15115 208 HARGAFTGAV-SNREGLFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLP----- 281 (444)
T ss_pred CCcCCCCCCc-cCCCCcEEECCCCEEEEEccccCCHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCCHH-----
Confidence 7554322111 1112334566788999999999999999999999999988766665555568999999974321
Q ss_pred CcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCe-EEEcCCCCH--HHHHHHHHHHHHHHHHHHhcCCCeEe
Q 003094 692 GRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDE-MIVFRQLTK--LEVKEIADIMLKEVFDRLKTKDIELQ 768 (848)
Q Consensus 692 ~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~-~i~f~~l~~--~el~~I~~~~l~~~~~~~~~~~~~l~ 768 (848)
..-....|+++|+.|+.. .|..+||.. +|+..+++.++.++..+... ....
T Consensus 282 ------------------------~~~~~~~f~~~l~~~l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~--~~~~ 335 (444)
T PRK15115 282 ------------------------KAMARGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKP--FVRA 335 (444)
T ss_pred ------------------------HHHHcCCccHHHHHhhceeeecCCChHhccccHHHHHHHHHHHHHHHhCC--CCCC
Confidence 111123588999999965 488899965 79999999999987665432 1225
Q ss_pred ecHHHHHHHHHccCCCCCCchHHHHHHHHHHH
Q 003094 769 VTERFRERVVEEGYNPSYGARPLRRAIMRLLE 800 (848)
Q Consensus 769 i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~l~ 800 (848)
+++++++.|.. |+|++|.|+|+++|++++.
T Consensus 336 ~~~~a~~~L~~--~~WpgNvreL~~~i~~~~~ 365 (444)
T PRK15115 336 FSTDAMKRLMT--ASWPGNVRQLVNVIEQCVA 365 (444)
T ss_pred cCHHHHHHHHh--CCCCChHHHHHHHHHHHHH
Confidence 89999999999 9999999999999998775
No 104
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.73 E-value=1.4e-16 Score=170.08 Aligned_cols=185 Identities=23% Similarity=0.321 Sum_probs=138.7
Q ss_pred CccCChHHHHHHHHHhc------------c---CCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCC
Q 003094 198 PVVGRQPQIERVVQILG------------R---RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMG 262 (848)
Q Consensus 198 ~iiG~~~~~~~l~~~l~------------~---~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~ 262 (848)
+++|.++++++|.++.. . .+..|++|+||||||||++|+++++.+..... ....++++++..
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~---~~~~~~v~v~~~ 99 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGY---VRKGHLVSVTRD 99 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCC---cccceEEEecHH
Confidence 58999998888766421 1 13458999999999999999999998864221 123468888877
Q ss_pred cccccccccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCC-CCchHHHHHHHhhhhcC--CceEEEEeeChHHHHh
Q 003094 263 LLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGA-AEGAIDAANILKPSLAR--GELQCIGATTLDEYRK 339 (848)
Q Consensus 263 ~l~~~~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~-~~~~~~~~~~L~~~l~~--~~v~vI~atn~~~~~~ 339 (848)
.+.. .+.|+.+..+..+++.+. +++|||||+|.|.+.+. .....+.++.|...++. .++++|++++...+..
T Consensus 100 ~l~~--~~~g~~~~~~~~~~~~a~---~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~ 174 (284)
T TIGR02880 100 DLVG--QYIGHTAPKTKEILKRAM---GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDS 174 (284)
T ss_pred HHhH--hhcccchHHHHHHHHHcc---CcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHH
Confidence 7663 466766666777776643 46999999999864322 22345677888888864 4789999998877777
Q ss_pred hhhcChhhhcccC-CCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhh
Q 003094 340 HIEKDPALERRFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQL 394 (848)
Q Consensus 340 ~~~~d~al~~Rf~-~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~ 394 (848)
++.++|+|.+||. .|.||+++.+++.+|++.++++. ...++++++..+..+
T Consensus 175 ~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~----~~~l~~~a~~~L~~~ 226 (284)
T TIGR02880 175 FFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQ----QYRFSAEAEEAFADY 226 (284)
T ss_pred HHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHh----ccccCHHHHHHHHHH
Confidence 7788999999996 89999999999999999988753 456777777666554
No 105
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=1.7e-17 Score=164.16 Aligned_cols=165 Identities=28% Similarity=0.402 Sum_probs=138.4
Q ss_pred CCCCCccCChHHHHHHHHHh-------------ccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEe
Q 003094 194 GKLDPVVGRQPQIERVVQIL-------------GRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLD 260 (848)
Q Consensus 194 ~~ld~iiG~~~~~~~l~~~l-------------~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~ 260 (848)
.+..++-|..++++.+.++. +..++.++|+|||||||||..|+++|++- +.-++.+-
T Consensus 174 vty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt----------dacfirvi 243 (435)
T KOG0729|consen 174 VTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT----------DACFIRVI 243 (435)
T ss_pred cccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc----------CceEEeeh
Confidence 45778899999999887763 45688999999999999999999999987 56677777
Q ss_pred CCcccccccccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCC---chHHHHHHHhhhh-------cCCceEEEE
Q 003094 261 MGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAE---GAIDAANILKPSL-------ARGELQCIG 330 (848)
Q Consensus 261 ~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~---~~~~~~~~L~~~l-------~~~~v~vI~ 330 (848)
.+.+. .+|+|+-...++.+|+-++....||+|+||+|.+-+++-+. ++.+++..++.++ .+|++.++.
T Consensus 244 gselv--qkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlm 321 (435)
T KOG0729|consen 244 GSELV--QKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLM 321 (435)
T ss_pred hHHHH--HHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEe
Confidence 78887 78999999999999999999889999999999997654332 3445555555444 378999999
Q ss_pred eeChHHHHhhhhcChhhhc--ccC-CCcCCCCCHHHHHHHHHHHHHHH
Q 003094 331 ATTLDEYRKHIEKDPALER--RFQ-PVKVPEPSVDETIQILKGLRERY 375 (848)
Q Consensus 331 atn~~~~~~~~~~d~al~~--Rf~-~i~~~~p~~~e~~~Il~~~~~~~ 375 (848)
+||+++ .+||+|+| |++ .|+|..|+.+-|..|++.+.+.+
T Consensus 322 atnrpd-----tldpallrpgrldrkvef~lpdlegrt~i~kihaksm 364 (435)
T KOG0729|consen 322 ATNRPD-----TLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSM 364 (435)
T ss_pred ecCCCC-----CcCHhhcCCcccccceeccCCcccccceeEEEecccc
Confidence 999998 69999999 886 89999999999999999877644
No 106
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.73 E-value=9.8e-17 Score=185.24 Aligned_cols=228 Identities=21% Similarity=0.269 Sum_probs=176.7
Q ss_pred cccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhcccC
Q 003094 532 RVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIG 611 (848)
Q Consensus 532 ~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g 611 (848)
.++|.+.++..+.+.+..... . ..++++.|++||||+++|++++....+...+|+.+||..+......+.++|
T Consensus 135 ~lig~s~~~~~v~~~i~~~a~------~-~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~~lfg 207 (463)
T TIGR01818 135 ELIGEAPAMQEVFRAIGRLSR------S-DITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFG 207 (463)
T ss_pred ceeecCHHHHHHHHHHHHHhC------c-CCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHhcC
Confidence 467777777777777765321 1 134899999999999999999999877789999999999876666677888
Q ss_pred CCCC-CcccccccchhHHHHcCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCchhhhc
Q 003094 612 SPPG-YVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEK 690 (848)
Q Consensus 612 ~~~g-~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~i~~ 690 (848)
...+ +.|... ...+.+..+.+++||||||+.+++.+|..|+++++++.+...++......++++|++|+......
T Consensus 208 ~~~~~~~~~~~--~~~g~~~~a~~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~-- 283 (463)
T TIGR01818 208 HEKGAFTGANT--RRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEAL-- 283 (463)
T ss_pred CCCCCCCCccc--CCCCcEEECCCCeEEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHHHH--
Confidence 7544 222211 11234456778999999999999999999999999999887777666667899999997443211
Q ss_pred cCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCe-EEEcCCCC--HHHHHHHHHHHHHHHHHHHhcCCCeE
Q 003094 691 GGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDE-MIVFRQLT--KLEVKEIADIMLKEVFDRLKTKDIEL 767 (848)
Q Consensus 691 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~-~i~f~~l~--~~el~~I~~~~l~~~~~~~~~~~~~l 767 (848)
.-...|+++|+.|+.. .|..+||. .+|+..++.+++.++...+... ..
T Consensus 284 ---------------------------~~~~~f~~~L~~rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~--~~ 334 (463)
T TIGR01818 284 ---------------------------VRQGKFREDLFHRLNVIRIHLPPLRERREDIPRLARHFLALAARELDVE--PK 334 (463)
T ss_pred ---------------------------HHcCCcHHHHHHHhCcceecCCCcccchhhHHHHHHHHHHHHHHHhCCC--CC
Confidence 0113578899999965 69999998 6899999999999887655321 13
Q ss_pred eecHHHHHHHHHccCCCCCCchHHHHHHHHHHHH
Q 003094 768 QVTERFRERVVEEGYNPSYGARPLRRAIMRLLED 801 (848)
Q Consensus 768 ~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~l~~ 801 (848)
.+++++++.|.. |+|++|.|+|++++++++..
T Consensus 335 ~~~~~a~~~L~~--~~wpgNvreL~~~~~~~~~~ 366 (463)
T TIGR01818 335 LLDPEALERLKQ--LRWPGNVRQLENLCRWLTVM 366 (463)
T ss_pred CcCHHHHHHHHh--CCCCChHHHHHHHHHHHHHh
Confidence 589999999999 89999999999999988763
No 107
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.73 E-value=1.7e-15 Score=182.46 Aligned_cols=179 Identities=21% Similarity=0.290 Sum_probs=126.4
Q ss_pred ccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCC-------CCceEEecccccccc
Q 003094 531 KRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGS-------EEAMIRLDMSEFMER 603 (848)
Q Consensus 531 ~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~-------~~~~i~i~~~~~~~~ 603 (848)
+.++|+++.+..+...+.+. ...+++|+||||||||++|+.+|+.+... +..++.+|++.+...
T Consensus 182 ~~~igr~~ei~~~~~~L~~~---------~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~ 252 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRR---------KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAG 252 (731)
T ss_pred CcccCcHHHHHHHHHHHhcC---------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhh
Confidence 46889998888877666432 12358999999999999999999987332 345667776655321
Q ss_pred cchhcccCCCCCCcccccc--cchhHHHHcCCCeEEEEcCCCcCC---------hHHHHHHHhhhcCcEEEcCCCceeec
Q 003094 604 HTVSKLIGSPPGYVGYTEG--GQLTEAVRRRPYTVVLFDEIEKAH---------PDVFNMMLQILEDGRLTDSKGRTVDF 672 (848)
Q Consensus 604 ~~~~~l~g~~~g~~g~~~~--~~l~~~~~~~~~~Vl~lDEid~l~---------~~~~~~Ll~~le~g~~~~~~g~~v~~ 672 (848)
..|.|..+. ..+++.+....+.||||||+|.+. .++++.|...|++|.+
T Consensus 253 ----------~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g~i---------- 312 (731)
T TIGR02639 253 ----------TKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSGKL---------- 312 (731)
T ss_pred ----------ccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCCCe----------
Confidence 124443332 334455555567899999999774 4578999999988653
Q ss_pred CCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhh--cChhhhhccCeEEEcCCCCHHHHHHHHH
Q 003094 673 KNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQY--FRPEFLNRLDEMIVFRQLTKLEVKEIAD 750 (848)
Q Consensus 673 ~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~ll~R~d~~i~f~~l~~~el~~I~~ 750 (848)
.+|.+||. ++...+ .+++|.+|| +.|.+++++.++..+|++
T Consensus 313 ---~~IgaTt~---------------------------------~e~~~~~~~d~al~rRf-~~i~v~~p~~~~~~~il~ 355 (731)
T TIGR02639 313 ---RCIGSTTY---------------------------------EEYKNHFEKDRALSRRF-QKIDVGEPSIEETVKILK 355 (731)
T ss_pred ---EEEEecCH---------------------------------HHHHHHhhhhHHHHHhC-ceEEeCCCCHHHHHHHHH
Confidence 47888762 111112 368999999 689999999999999998
Q ss_pred HHHHHHHHHHhcCCCeEeecHHHHHHHHHc
Q 003094 751 IMLKEVFDRLKTKDIELQVTERFRERVVEE 780 (848)
Q Consensus 751 ~~l~~~~~~~~~~~~~l~i~~~a~~~l~~~ 780 (848)
.....+.. ...+.++++++..++..
T Consensus 356 ~~~~~~e~-----~~~v~i~~~al~~~~~l 380 (731)
T TIGR02639 356 GLKEKYEE-----FHHVKYSDEALEAAVEL 380 (731)
T ss_pred HHHHHHHh-----ccCcccCHHHHHHHHHh
Confidence 87766432 12356899999999874
No 108
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=3.1e-17 Score=185.35 Aligned_cols=209 Identities=25% Similarity=0.324 Sum_probs=160.2
Q ss_pred hhhhhhcCCCCCccCChHHHHHHHHH---hc---------cCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCc
Q 003094 187 LTKLAEEGKLDPVVGRQPQIERVVQI---LG---------RRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGK 254 (848)
Q Consensus 187 l~~~~~~~~ld~iiG~~~~~~~l~~~---l~---------~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~ 254 (848)
..+.....+|.++.|.++.++.+.++ |. .+-+++++|+||||||||.+|+++|.+. +.
T Consensus 140 ~~~~~~~v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA----------~V 209 (596)
T COG0465 140 YLEDQVKVTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEA----------GV 209 (596)
T ss_pred hcccccCcChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhccc----------CC
Confidence 33333345799999999888876554 33 3557899999999999999999999877 67
Q ss_pred eEEEEeCCcccccccccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCC---Cch---HHHHHHHhhhhc----CC
Q 003094 255 KVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAA---EGA---IDAANILKPSLA----RG 324 (848)
Q Consensus 255 ~v~~~~~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~---~~~---~~~~~~L~~~l~----~~ 324 (848)
++++++.+++. ..++|--..+++.+|..+++..|||+||||+|..-..+.. .+. ....|.|+..++ +.
T Consensus 210 PFf~iSGS~FV--emfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~ 287 (596)
T COG0465 210 PFFSISGSDFV--EMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNE 287 (596)
T ss_pred Cceeccchhhh--hhhcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCC
Confidence 78899988888 5577777889999999999999999999999999765421 122 235666666665 35
Q ss_pred ceEEEEeeChHHHHhhhhcChhhhc--ccC-CCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhccccc
Q 003094 325 ELQCIGATTLDEYRKHIEKDPALER--RFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISD 401 (848)
Q Consensus 325 ~v~vI~atn~~~~~~~~~~d~al~~--Rf~-~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~ 401 (848)
.+++|++||+++ -+||+|+| ||+ .|.++.|+...|.+|++-+.++. .+. .+-.+..+++.+.++.+.
T Consensus 288 gviviaaTNRpd-----VlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~----~l~-~~Vdl~~iAr~tpGfsGA 357 (596)
T COG0465 288 GVIVIAATNRPD-----VLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNK----PLA-EDVDLKKIARGTPGFSGA 357 (596)
T ss_pred ceEEEecCCCcc-----cchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcC----CCC-CcCCHHHHhhhCCCcccc
Confidence 699999999999 58999999 997 89999999999999999776632 221 122345588888888766
Q ss_pred CCChhhHHHHHHHHhhHHHHh
Q 003094 402 RFLPDKAIDLIDEAGSRVRLR 422 (848)
Q Consensus 402 ~~~p~~a~~ll~~a~~~~~~~ 422 (848)
+...++.+|...+..+
T Consensus 358 -----dL~nl~NEAal~aar~ 373 (596)
T COG0465 358 -----DLANLLNEAALLAARR 373 (596)
T ss_pred -----hHhhhHHHHHHHHHHh
Confidence 5666776665544433
No 109
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.72 E-value=2.8e-17 Score=186.26 Aligned_cols=193 Identities=20% Similarity=0.273 Sum_probs=134.2
Q ss_pred HHHHHHHhhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCC---------Cce
Q 003094 522 LLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSE---------EAM 592 (848)
Q Consensus 522 l~~l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~---------~~~ 592 (848)
..+++...+++|+||+++++.|.+++...+. .+.+||+||+|||||++|+.||+.+++.+ .++
T Consensus 7 arKYRPqtFddVIGQe~vv~~L~~al~~gRL--------pHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PC 78 (700)
T PRK12323 7 ARKWRPRDFTTLVGQEHVVRALTHALEQQRL--------HHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPC 78 (700)
T ss_pred HHHhCCCcHHHHcCcHHHHHHHHHHHHhCCC--------ceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCC
Confidence 3467778899999999999999999875432 23479999999999999999999997631 122
Q ss_pred EEe-cccccccccchhcccCC-CCCCcccccccchhHHHH----cCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCC
Q 003094 593 IRL-DMSEFMERHTVSKLIGS-PPGYVGYTEGGQLTEAVR----RRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSK 666 (848)
Q Consensus 593 i~i-~~~~~~~~~~~~~l~g~-~~g~~g~~~~~~l~~~~~----~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~ 666 (848)
..+ .|..+...... +++.- .....|.++.+.+.+.+. .+.+.|+||||+|+++...+|.||+.||+
T Consensus 79 G~C~sC~~I~aG~hp-DviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEE------- 150 (700)
T PRK12323 79 GQCRACTEIDAGRFV-DYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEE------- 150 (700)
T ss_pred cccHHHHHHHcCCCC-cceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhcc-------
Confidence 111 12222111111 11110 011223333333444333 24578999999999999999999999998
Q ss_pred CceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHH
Q 003094 667 GRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVK 746 (848)
Q Consensus 667 g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~ 746 (848)
+..+++||++||... .+.+.+++|| ..+.|.+++.+++.
T Consensus 151 ----PP~~v~FILaTtep~------------------------------------kLlpTIrSRC-q~f~f~~ls~eei~ 189 (700)
T PRK12323 151 ----PPEHVKFILATTDPQ------------------------------------KIPVTVLSRC-LQFNLKQMPPGHIV 189 (700)
T ss_pred ----CCCCceEEEEeCChH------------------------------------hhhhHHHHHH-HhcccCCCChHHHH
Confidence 236789999987333 2558899999 99999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCeEeecHHHHHHHHHc
Q 003094 747 EIADIMLKEVFDRLKTKDIELQVTERFRERVVEE 780 (848)
Q Consensus 747 ~I~~~~l~~~~~~~~~~~~~l~i~~~a~~~l~~~ 780 (848)
+.+..++.+ ..+.+++++++.|+..
T Consensus 190 ~~L~~Il~~---------Egi~~d~eAL~~IA~~ 214 (700)
T PRK12323 190 SHLDAILGE---------EGIAHEVNALRLLAQA 214 (700)
T ss_pred HHHHHHHHH---------cCCCCCHHHHHHHHHH
Confidence 988877754 2245788888888873
No 110
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.72 E-value=1.3e-16 Score=182.55 Aligned_cols=201 Identities=19% Similarity=0.208 Sum_probs=155.8
Q ss_pred hhhhhhhcCCCCCccCChHHHHHHHHHhccCCCCC-cEEECCCCCcHHHHHHHHHHHhhCCCCCC--------------C
Q 003094 186 NLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNN-PCLIGEPGVGKTAIAEGLAQRIASGDVPD--------------T 250 (848)
Q Consensus 186 ~l~~~~~~~~ld~iiG~~~~~~~l~~~l~~~~~~~-iLL~GppGtGKT~la~~la~~l~~~~~~~--------------~ 250 (848)
.|.+++||.+|++++|++..++.|...+......| +||+||+|||||++|+.+|+.+++...+. .
T Consensus 5 ~l~~kyRP~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~ 84 (509)
T PRK14958 5 VLARKWRPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDE 84 (509)
T ss_pred hHHHHHCCCCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhc
Confidence 48899999999999999999999999998888887 48999999999999999999998643221 1
Q ss_pred CCCceEEEEeCCcccccccccchHHHHHHHHHHHHH----hCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcC--C
Q 003094 251 IEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIK----QSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR--G 324 (848)
Q Consensus 251 l~~~~v~~~~~~~l~~~~~~~g~~~~~l~~l~~~~~----~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~--~ 324 (848)
.....+++++.++-. . .+.++.+++.+. .+...|+||||+|.|. .+..+.|++.++. .
T Consensus 85 g~~~d~~eidaas~~----~----v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls--------~~a~naLLk~LEepp~ 148 (509)
T PRK14958 85 GRFPDLFEVDAASRT----K----VEDTRELLDNIPYAPTKGRFKVYLIDEVHMLS--------GHSFNALLKTLEEPPS 148 (509)
T ss_pred CCCceEEEEcccccC----C----HHHHHHHHHHHhhccccCCcEEEEEEChHhcC--------HHHHHHHHHHHhccCC
Confidence 122346777654211 1 123445555443 2345699999999995 3468888888884 5
Q ss_pred ceEEEEeeChHHHHhhhhcChhhhcccCCCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCC
Q 003094 325 ELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFL 404 (848)
Q Consensus 325 ~v~vI~atn~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~ 404 (848)
.+.+|++|+.+. .+.+.+.+||..+.|..++.++....++.++++ .++.++++++..+++.+.|-
T Consensus 149 ~~~fIlattd~~-----kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~----egi~~~~~al~~ia~~s~Gs------ 213 (509)
T PRK14958 149 HVKFILATTDHH-----KLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKE----ENVEFENAALDLLARAANGS------ 213 (509)
T ss_pred CeEEEEEECChH-----hchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCc------
Confidence 688888887665 577889999999999999999988888887764 57889999999999988764
Q ss_pred hhhHHHHHHHHhh
Q 003094 405 PDKAIDLIDEAGS 417 (848)
Q Consensus 405 p~~a~~ll~~a~~ 417 (848)
+++++.+++.+++
T Consensus 214 lR~al~lLdq~ia 226 (509)
T PRK14958 214 VRDALSLLDQSIA 226 (509)
T ss_pred HHHHHHHHHHHHh
Confidence 5568999988764
No 111
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.72 E-value=5.2e-17 Score=189.71 Aligned_cols=192 Identities=19% Similarity=0.290 Sum_probs=132.5
Q ss_pred HHHHHHhhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCC----CceEEe-cc
Q 003094 523 LKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSE----EAMIRL-DM 597 (848)
Q Consensus 523 ~~l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~----~~~i~i-~~ 597 (848)
.++++..+++|+||+.++..|.+++...+ ..+.+||+||+|||||++|+++|+.+++.. .++..+ .|
T Consensus 8 eKyRP~tFddIIGQe~Iv~~LknaI~~~r--------l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC 79 (944)
T PRK14949 8 RKWRPATFEQMVGQSHVLHALTNALTQQR--------LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSC 79 (944)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHhCC--------CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHH
Confidence 46777788999999999999988887432 123469999999999999999999997532 122211 12
Q ss_pred cccccccchhcc-cCCCCCCcccccccchhHHHH----cCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeec
Q 003094 598 SEFMERHTVSKL-IGSPPGYVGYTEGGQLTEAVR----RRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDF 672 (848)
Q Consensus 598 ~~~~~~~~~~~l-~g~~~g~~g~~~~~~l~~~~~----~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~ 672 (848)
..+.+.....-+ +.. ....+....+.+.+.+. .+.+.|+||||+|+++.+.+|.||+.||+. .
T Consensus 80 ~~i~~g~~~DviEidA-as~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEP-----------P 147 (944)
T PRK14949 80 VEIAQGRFVDLIEVDA-ASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEP-----------P 147 (944)
T ss_pred HHHhcCCCceEEEecc-ccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcc-----------C
Confidence 222111100000 100 00122222233333333 245789999999999999999999999982 3
Q ss_pred CCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHHHH
Q 003094 673 KNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIM 752 (848)
Q Consensus 673 ~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~~~ 752 (848)
.+++||++|+.... +.+.+++|| ..+.|.+++.+++...+...
T Consensus 148 ~~vrFILaTTe~~k------------------------------------Ll~TIlSRC-q~f~fkpLs~eEI~~~L~~i 190 (944)
T PRK14949 148 EHVKFLLATTDPQK------------------------------------LPVTVLSRC-LQFNLKSLTQDEIGTQLNHI 190 (944)
T ss_pred CCeEEEEECCCchh------------------------------------chHHHHHhh-eEEeCCCCCHHHHHHHHHHH
Confidence 57788888763222 457899999 99999999999999998877
Q ss_pred HHHHHHHHhcCCCeEeecHHHHHHHHHc
Q 003094 753 LKEVFDRLKTKDIELQVTERFRERVVEE 780 (848)
Q Consensus 753 l~~~~~~~~~~~~~l~i~~~a~~~l~~~ 780 (848)
+.. ..+.+++++++.|+..
T Consensus 191 l~~---------EgI~~edeAL~lIA~~ 209 (944)
T PRK14949 191 LTQ---------EQLPFEAEALTLLAKA 209 (944)
T ss_pred HHH---------cCCCCCHHHHHHHHHH
Confidence 765 1356899999999983
No 112
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.72 E-value=1.4e-16 Score=179.26 Aligned_cols=202 Identities=22% Similarity=0.235 Sum_probs=158.4
Q ss_pred hhhhhhhcCCCCCccCChHHHHHHHHHhccCCCC-CcEEECCCCCcHHHHHHHHHHHhhCCCCCC--------------C
Q 003094 186 NLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKN-NPCLIGEPGVGKTAIAEGLAQRIASGDVPD--------------T 250 (848)
Q Consensus 186 ~l~~~~~~~~ld~iiG~~~~~~~l~~~l~~~~~~-~iLL~GppGtGKT~la~~la~~l~~~~~~~--------------~ 250 (848)
+|..++||.+|++++|++..++.|.+.+...... ++||+||+|+||||+|+.+|+.+++...+. .
T Consensus 2 ~la~KyRP~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~ 81 (491)
T PRK14964 2 NLALKYRPSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKN 81 (491)
T ss_pred ChhHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhc
Confidence 5788999999999999999999999988876665 589999999999999999999987644332 1
Q ss_pred CCCceEEEEeCCcccccccccchHHHHHHHHHHHHHh----CCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcC--C
Q 003094 251 IEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQ----SDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR--G 324 (848)
Q Consensus 251 l~~~~v~~~~~~~l~~~~~~~g~~~~~l~~l~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~--~ 324 (848)
.....++++|.++-. | ...++.+++.+.. +...|++|||+|.|. ....+.|+..++. .
T Consensus 82 ~~~~Dv~eidaas~~------~--vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls--------~~A~NaLLK~LEePp~ 145 (491)
T PRK14964 82 SNHPDVIEIDAASNT------S--VDDIKVILENSCYLPISSKFKVYIIDEVHMLS--------NSAFNALLKTLEEPAP 145 (491)
T ss_pred cCCCCEEEEecccCC------C--HHHHHHHHHHHHhccccCCceEEEEeChHhCC--------HHHHHHHHHHHhCCCC
Confidence 234567777765322 1 2335556655542 345699999999994 3478889999984 5
Q ss_pred ceEEEEeeChHHHHhhhhcChhhhcccCCCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCC
Q 003094 325 ELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFL 404 (848)
Q Consensus 325 ~v~vI~atn~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~ 404 (848)
.+.+|++|+... .+.+.+.+||..+.|..++.++..+.+...+++ .++.++++++..+++.+.+.
T Consensus 146 ~v~fIlatte~~-----Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~----Egi~i~~eAL~lIa~~s~Gs------ 210 (491)
T PRK14964 146 HVKFILATTEVK-----KIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKK----ENIEHDEESLKLIAENSSGS------ 210 (491)
T ss_pred CeEEEEEeCChH-----HHHHHHHHhheeeecccccHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC------
Confidence 678888887665 577899999999999999999999998888774 57889999999999988764
Q ss_pred hhhHHHHHHHHhhH
Q 003094 405 PDKAIDLIDEAGSR 418 (848)
Q Consensus 405 p~~a~~ll~~a~~~ 418 (848)
.+.+..+++.++..
T Consensus 211 lR~alslLdqli~y 224 (491)
T PRK14964 211 MRNALFLLEQAAIY 224 (491)
T ss_pred HHHHHHHHHHHHHh
Confidence 44588888887653
No 113
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.71 E-value=9e-17 Score=196.23 Aligned_cols=185 Identities=16% Similarity=0.129 Sum_probs=136.7
Q ss_pred HHhccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCccccccc---------------------
Q 003094 211 QILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTK--------------------- 269 (848)
Q Consensus 211 ~~l~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~~--------------------- 269 (848)
..++...++++||+||||||||.+|+++|... +.+++.++++.+..+..
T Consensus 1623 lrLGl~pPKGILLiGPPGTGKTlLAKALA~es----------~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~ 1692 (2281)
T CHL00206 1623 LRLALSPSRGILVIGSIGTGRSYLVKYLATNS----------YVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDD 1692 (2281)
T ss_pred HHcCCCCCCceEEECCCCCCHHHHHHHHHHhc----------CCceEEEEHHHHhhcccccccccccccccccccccccc
Confidence 34666788999999999999999999999987 67788888877763210
Q ss_pred ------------------ccch--HHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhc-------
Q 003094 270 ------------------YRGE--FEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLA------- 322 (848)
Q Consensus 270 ------------------~~g~--~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~------- 322 (848)
+.+. ...+++.+|+.|++..||||||||||.+...... .-..+.|...|.
T Consensus 1693 ~~~~~~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds~---~ltL~qLLneLDg~~~~~s 1769 (2281)
T CHL00206 1693 IDRDLDTELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNESN---YLSLGLLVNSLSRDCERCS 1769 (2281)
T ss_pred cccccchhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCccc---eehHHHHHHHhccccccCC
Confidence 0111 1234888999999999999999999999754211 112445544443
Q ss_pred CCceEEEEeeChHHHHhhhhcChhhhc--ccC-CCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCCh--HHHHHHHhhhhc
Q 003094 323 RGELQCIGATTLDEYRKHIEKDPALER--RFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTD--EALVSAAQLSYQ 397 (848)
Q Consensus 323 ~~~v~vI~atn~~~~~~~~~~d~al~~--Rf~-~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~--~~l~~l~~~s~~ 397 (848)
..+++||||||.++ .+||||+| ||+ .|.|+.|+..+|.+++..+... .++.+.+ ..+..++..+.|
T Consensus 1770 ~~~VIVIAATNRPD-----~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~t----kg~~L~~~~vdl~~LA~~T~G 1840 (2281)
T CHL00206 1770 TRNILVIASTHIPQ-----KVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYT----RGFHLEKKMFHTNGFGSITMG 1840 (2281)
T ss_pred CCCEEEEEeCCCcc-----cCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhh----cCCCCCcccccHHHHHHhCCC
Confidence 34699999999999 69999999 997 8999999999999988765421 2333332 247788998888
Q ss_pred ccccCCChhhHHHHHHHHhhHHHHh
Q 003094 398 YISDRFLPDKAIDLIDEAGSRVRLR 422 (848)
Q Consensus 398 ~~~~~~~p~~a~~ll~~a~~~~~~~ 422 (848)
|.+. +...++.+|...+..+
T Consensus 1841 fSGA-----DLanLvNEAaliAirq 1860 (2281)
T CHL00206 1841 SNAR-----DLVALTNEALSISITQ 1860 (2281)
T ss_pred CCHH-----HHHHHHHHHHHHHHHc
Confidence 8765 6777888887655443
No 114
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.71 E-value=4.1e-16 Score=186.16 Aligned_cols=200 Identities=18% Similarity=0.150 Sum_probs=152.8
Q ss_pred hhhhhhhcCCCCCccCChHHHHHHHHHhccCCCCC-cEEECCCCCcHHHHHHHHHHHhhCCCCCCC--------------
Q 003094 186 NLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNN-PCLIGEPGVGKTAIAEGLAQRIASGDVPDT-------------- 250 (848)
Q Consensus 186 ~l~~~~~~~~ld~iiG~~~~~~~l~~~l~~~~~~~-iLL~GppGtGKT~la~~la~~l~~~~~~~~-------------- 250 (848)
.|..+|||.+|++|||++..++.|...+......| +||+||+|||||++|+.||+.|.+...+..
T Consensus 4 ~l~~KyRP~~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~ 83 (824)
T PRK07764 4 ALYRRYRPATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAP 83 (824)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHc
Confidence 47789999999999999999999999999888888 589999999999999999999986432110
Q ss_pred --CCCceEEEEeCCcccccccccchHHHHHHHHHHHHH----hCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcC-
Q 003094 251 --IEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIK----QSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR- 323 (848)
Q Consensus 251 --l~~~~v~~~~~~~l~~~~~~~g~~~~~l~~l~~~~~----~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~- 323 (848)
-....|++++..... .+ ..++.+.+.+. .....|+||||+|.|. ...+|.|+++|+.
T Consensus 84 g~~~~~dv~eidaas~~----~V----d~iR~l~~~~~~~p~~~~~KV~IIDEad~lt--------~~a~NaLLK~LEEp 147 (824)
T PRK07764 84 GGPGSLDVTEIDAASHG----GV----DDARELRERAFFAPAESRYKIFIIDEAHMVT--------PQGFNALLKIVEEP 147 (824)
T ss_pred CCCCCCcEEEecccccC----CH----HHHHHHHHHHHhchhcCCceEEEEechhhcC--------HHHHHHHHHHHhCC
Confidence 012345555543211 11 22333333322 2456799999999994 4578999999984
Q ss_pred -CceEEEEeeChHHHHhhhhcChhhhcccCCCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccC
Q 003094 324 -GELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDR 402 (848)
Q Consensus 324 -~~v~vI~atn~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~ 402 (848)
..+++|++|+..+ .+.+.|++||..+.|..++.++..++|..+++ ..++.++++++..+++.+.+.+
T Consensus 148 P~~~~fIl~tt~~~-----kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~----~EGv~id~eal~lLa~~sgGdl--- 215 (824)
T PRK07764 148 PEHLKFIFATTEPD-----KVIGTIRSRTHHYPFRLVPPEVMRGYLERICA----QEGVPVEPGVLPLVIRAGGGSV--- 215 (824)
T ss_pred CCCeEEEEEeCChh-----hhhHHHHhheeEEEeeCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHcCCCH---
Confidence 6788888887766 47789999999999999999999988888776 3578899999999998887643
Q ss_pred CChhhHHHHHHHHh
Q 003094 403 FLPDKAIDLIDEAG 416 (848)
Q Consensus 403 ~~p~~a~~ll~~a~ 416 (848)
..++.+|++.+
T Consensus 216 ---R~Al~eLEKLi 226 (824)
T PRK07764 216 ---RDSLSVLDQLL 226 (824)
T ss_pred ---HHHHHHHHHHH
Confidence 45777777765
No 115
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.71 E-value=1.7e-16 Score=183.39 Aligned_cols=201 Identities=21% Similarity=0.225 Sum_probs=155.8
Q ss_pred hhhhhhhcCCCCCccCChHHHHHHHHHhccCCCCCc-EEECCCCCcHHHHHHHHHHHhhCCCCCCC--------------
Q 003094 186 NLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNP-CLIGEPGVGKTAIAEGLAQRIASGDVPDT-------------- 250 (848)
Q Consensus 186 ~l~~~~~~~~ld~iiG~~~~~~~l~~~l~~~~~~~i-LL~GppGtGKT~la~~la~~l~~~~~~~~-------------- 250 (848)
.|..++||.+|++++|++..++.|...+..+...|. ||+||+|+|||++|+.+|+.+++......
T Consensus 5 ~La~KyRP~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~ 84 (647)
T PRK07994 5 VLARKWRPQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQ 84 (647)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHc
Confidence 588999999999999999999999999998888785 89999999999999999999987421100
Q ss_pred CCCceEEEEeCCcccccccccchHHHHHHHHHHHHH----hCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcC--C
Q 003094 251 IEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIK----QSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR--G 324 (848)
Q Consensus 251 l~~~~v~~~~~~~l~~~~~~~g~~~~~l~~l~~~~~----~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~--~ 324 (848)
.....+++++.+.- .+ .+.++.+.+.+. .+...|+||||+|.|. ....|.|++.+|. +
T Consensus 85 g~~~D~ieidaas~------~~--VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls--------~~a~NALLKtLEEPp~ 148 (647)
T PRK07994 85 GRFVDLIEIDAASR------TK--VEDTRELLDNVQYAPARGRFKVYLIDEVHMLS--------RHSFNALLKTLEEPPE 148 (647)
T ss_pred CCCCCceeeccccc------CC--HHHHHHHHHHHHhhhhcCCCEEEEEechHhCC--------HHHHHHHHHHHHcCCC
Confidence 01123455543321 11 123444444443 3456799999999994 4578999999985 6
Q ss_pred ceEEEEeeChHHHHhhhhcChhhhcccCCCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCC
Q 003094 325 ELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFL 404 (848)
Q Consensus 325 ~v~vI~atn~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~ 404 (848)
.+.+|++|+... .+.+.+++||..+.|..++.++..+.++.++.+ .++.++++++..++..+.|.
T Consensus 149 ~v~FIL~Tt~~~-----kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~----e~i~~e~~aL~~Ia~~s~Gs------ 213 (647)
T PRK07994 149 HVKFLLATTDPQ-----KLPVTILSRCLQFHLKALDVEQIRQQLEHILQA----EQIPFEPRALQLLARAADGS------ 213 (647)
T ss_pred CeEEEEecCCcc-----ccchHHHhhheEeeCCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC------
Confidence 788888888776 688999999999999999999999988887763 47888999999999998876
Q ss_pred hhhHHHHHHHHhh
Q 003094 405 PDKAIDLIDEAGS 417 (848)
Q Consensus 405 p~~a~~ll~~a~~ 417 (848)
+++++.+++.+..
T Consensus 214 ~R~Al~lldqaia 226 (647)
T PRK07994 214 MRDALSLTDQAIA 226 (647)
T ss_pred HHHHHHHHHHHHH
Confidence 4569999987754
No 116
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.71 E-value=3.1e-16 Score=177.52 Aligned_cols=201 Identities=23% Similarity=0.269 Sum_probs=149.4
Q ss_pred hhhhhhhcCCCCCccCChHHHHHHHHHhccCCCCC-cEEECCCCCcHHHHHHHHHHHhhCCCCCC--------------C
Q 003094 186 NLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNN-PCLIGEPGVGKTAIAEGLAQRIASGDVPD--------------T 250 (848)
Q Consensus 186 ~l~~~~~~~~ld~iiG~~~~~~~l~~~l~~~~~~~-iLL~GppGtGKT~la~~la~~l~~~~~~~--------------~ 250 (848)
.|.+++||.+|++++|++..++.|...+..+...| +||+|||||||||+|+.+|+.+.....+. .
T Consensus 3 ~l~~kyRP~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~ 82 (472)
T PRK14962 3 ALYRKYRPKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDE 82 (472)
T ss_pred hhHHHHCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhc
Confidence 47789999999999999999999999888877766 69999999999999999999987532211 0
Q ss_pred CCCceEEEEeCCcccccccccchHHHHHHHHHHHHHh----CCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcC--C
Q 003094 251 IEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQ----SDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR--G 324 (848)
Q Consensus 251 l~~~~v~~~~~~~l~~~~~~~g~~~~~l~~l~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~--~ 324 (848)
.....++.++.+.- .| ...++.+.+.+.. +...|+||||+|.|. .+.++.|+..++. +
T Consensus 83 g~~~dv~el~aa~~------~g--id~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt--------~~a~~~LLk~LE~p~~ 146 (472)
T PRK14962 83 GTFMDVIELDAASN------RG--IDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLT--------KEAFNALLKTLEEPPS 146 (472)
T ss_pred CCCCccEEEeCccc------CC--HHHHHHHHHHHhhChhcCCeEEEEEEChHHhH--------HHHHHHHHHHHHhCCC
Confidence 01124555554321 11 1234444444331 345699999999994 3367788888875 6
Q ss_pred ceEEEEeeChHHHHhhhhcChhhhcccCCCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCC
Q 003094 325 ELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFL 404 (848)
Q Consensus 325 ~v~vI~atn~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~ 404 (848)
.+++|++|+.+. .+++++.+||..+.|.+++.++...+++..+. ..++.++++++..++..+.+-.
T Consensus 147 ~vv~Ilattn~~-----kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~----~egi~i~~eal~~Ia~~s~Gdl----- 212 (472)
T PRK14962 147 HVVFVLATTNLE-----KVPPTIISRCQVIEFRNISDELIIKRLQEVAE----AEGIEIDREALSFIAKRASGGL----- 212 (472)
T ss_pred cEEEEEEeCChH-----hhhHHHhcCcEEEEECCccHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHhCCCH-----
Confidence 788887777554 57999999999999999999999988888776 3578899999999999776543
Q ss_pred hhhHHHHHHHHhh
Q 003094 405 PDKAIDLIDEAGS 417 (848)
Q Consensus 405 p~~a~~ll~~a~~ 417 (848)
+.++..|+.++.
T Consensus 213 -R~aln~Le~l~~ 224 (472)
T PRK14962 213 -RDALTMLEQVWK 224 (472)
T ss_pred -HHHHHHHHHHHH
Confidence 347777776543
No 117
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.71 E-value=7.9e-16 Score=168.78 Aligned_cols=190 Identities=23% Similarity=0.298 Sum_probs=138.7
Q ss_pred hhhhhhcCCCCCccCChHHHHHHHHHhc-----cCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeC
Q 003094 187 LTKLAEEGKLDPVVGRQPQIERVVQILG-----RRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDM 261 (848)
Q Consensus 187 l~~~~~~~~ld~iiG~~~~~~~l~~~l~-----~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~ 261 (848)
+..++||.+|++++|+++.++.+...+. .....+++|+||||||||++|+.+|+.+. ..+...+.
T Consensus 15 ~~~~~rP~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~----------~~~~~~~~ 84 (328)
T PRK00080 15 IERSLRPKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMG----------VNIRITSG 84 (328)
T ss_pred hhhhcCcCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhC----------CCeEEEec
Confidence 3567899999999999999998877664 34467899999999999999999999983 33444443
Q ss_pred CcccccccccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcC------------------
Q 003094 262 GLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR------------------ 323 (848)
Q Consensus 262 ~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~------------------ 323 (848)
..+.. ...+..++... ..+.+|||||+|.+.+. ..+.|...++.
T Consensus 85 ~~~~~--------~~~l~~~l~~l--~~~~vl~IDEi~~l~~~--------~~e~l~~~~e~~~~~~~l~~~~~~~~~~~ 146 (328)
T PRK00080 85 PALEK--------PGDLAAILTNL--EEGDVLFIDEIHRLSPV--------VEEILYPAMEDFRLDIMIGKGPAARSIRL 146 (328)
T ss_pred ccccC--------hHHHHHHHHhc--ccCCEEEEecHhhcchH--------HHHHHHHHHHhcceeeeeccCccccceee
Confidence 32211 11233334333 23569999999998532 33344444431
Q ss_pred --CceEEEEeeChHHHHhhhhcChhhhcccC-CCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccc
Q 003094 324 --GELQCIGATTLDEYRKHIEKDPALERRFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYIS 400 (848)
Q Consensus 324 --~~v~vI~atn~~~~~~~~~~d~al~~Rf~-~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~ 400 (848)
..+.+|++|+... .+++++.+||. .+.|+.|+.+++.+|++..... .++.++++++..++..+.+.
T Consensus 147 ~l~~~~li~at~~~~-----~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~----~~~~~~~~~~~~ia~~~~G~-- 215 (328)
T PRK00080 147 DLPPFTLIGATTRAG-----LLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARI----LGVEIDEEGALEIARRSRGT-- 215 (328)
T ss_pred cCCCceEEeecCCcc-----cCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHH----cCCCcCHHHHHHHHHHcCCC--
Confidence 2367888998876 57899999996 7899999999999999987764 57889999999999988775
Q ss_pred cCCChhhHHHHHHHHhhHH
Q 003094 401 DRFLPDKAIDLIDEAGSRV 419 (848)
Q Consensus 401 ~~~~p~~a~~ll~~a~~~~ 419 (848)
|+.+..+++.+...+
T Consensus 216 ----pR~a~~~l~~~~~~a 230 (328)
T PRK00080 216 ----PRIANRLLRRVRDFA 230 (328)
T ss_pred ----chHHHHHHHHHHHHH
Confidence 456777777655433
No 118
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.70 E-value=6.8e-15 Score=178.15 Aligned_cols=179 Identities=18% Similarity=0.267 Sum_probs=121.4
Q ss_pred ccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCC-------CCceEEecccccccc
Q 003094 531 KRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGS-------EEAMIRLDMSEFMER 603 (848)
Q Consensus 531 ~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~-------~~~~i~i~~~~~~~~ 603 (848)
+.++||++.+..+...+.+. ...+++|+||||||||++++.+|+.+... +..++.+|++.+..
T Consensus 187 d~~iGr~~ei~~~i~~l~r~---------~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~a- 256 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRR---------RQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQA- 256 (852)
T ss_pred CcccCCHHHHHHHHHHHhcC---------CcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhc-
Confidence 46889998877777666432 22358999999999999999999987322 23355555554321
Q ss_pred cchhcccCCCCCCcccccc--cchhHHHHc-CCCeEEEEcCCCcCCh--------HHHHHHHhhhcCcEEEcCCCceeec
Q 003094 604 HTVSKLIGSPPGYVGYTEG--GQLTEAVRR-RPYTVVLFDEIEKAHP--------DVFNMMLQILEDGRLTDSKGRTVDF 672 (848)
Q Consensus 604 ~~~~~l~g~~~g~~g~~~~--~~l~~~~~~-~~~~Vl~lDEid~l~~--------~~~~~Ll~~le~g~~~~~~g~~v~~ 672 (848)
...|.|..+. ..+.+.+++ ..+.||||||++.+.. ++-|.|+..|+.|.+
T Consensus 257 ---------g~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G~l---------- 317 (852)
T TIGR03345 257 ---------GASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARGEL---------- 317 (852)
T ss_pred ---------ccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCCCe----------
Confidence 1124444332 233444433 4568999999998852 455689999988764
Q ss_pred CCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhh--cChhhhhccCeEEEcCCCCHHHHHHHHH
Q 003094 673 KNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQY--FRPEFLNRLDEMIVFRQLTKLEVKEIAD 750 (848)
Q Consensus 673 ~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~ll~R~d~~i~f~~l~~~el~~I~~ 750 (848)
.+|.+|+. ++...+ .+|+|.+|| ++|.+++++.++..+|+.
T Consensus 318 ---~~IgaTT~---------------------------------~e~~~~~~~d~AL~rRf-~~i~v~eps~~~~~~iL~ 360 (852)
T TIGR03345 318 ---RTIAATTW---------------------------------AEYKKYFEKDPALTRRF-QVVKVEEPDEETAIRMLR 360 (852)
T ss_pred ---EEEEecCH---------------------------------HHHhhhhhccHHHHHhC-eEEEeCCCCHHHHHHHHH
Confidence 47888762 111122 479999999 799999999999999985
Q ss_pred HHHHHHHHHHhcCCCeEeecHHHHHHHHHc
Q 003094 751 IMLKEVFDRLKTKDIELQVTERFRERVVEE 780 (848)
Q Consensus 751 ~~l~~~~~~~~~~~~~l~i~~~a~~~l~~~ 780 (848)
.....+... ..+.|+++++..++..
T Consensus 361 ~~~~~~e~~-----~~v~i~d~al~~~~~l 385 (852)
T TIGR03345 361 GLAPVLEKH-----HGVLILDEAVVAAVEL 385 (852)
T ss_pred HHHHhhhhc-----CCCeeCHHHHHHHHHH
Confidence 555443221 2366899999988874
No 119
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.70 E-value=6.1e-17 Score=157.70 Aligned_cols=208 Identities=18% Similarity=0.253 Sum_probs=157.4
Q ss_pred ccchHHhhhhhhhhhhcCCCCCccCChHHHHHHHHHhccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceE
Q 003094 177 MPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKV 256 (848)
Q Consensus 177 ~~~l~~~~~~l~~~~~~~~ld~iiG~~~~~~~l~~~l~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v 256 (848)
++.-..|..+|.++|||..+.++||.++.+++|..+......+|++|.||||+||||-+.+||+++....+. --+
T Consensus 7 ~~~~~~~~l~wVeKYrP~~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~k-----e~v 81 (333)
T KOG0991|consen 7 MSKSDKYQLPWVEKYRPSVLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSYK-----EAV 81 (333)
T ss_pred CCccccccchHHHhhCchHHHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhh-----hHh
Confidence 344455667799999999999999999999999999999999999999999999999999999998643221 125
Q ss_pred EEEeCCcccccccccchHHHHHHHHHHHHH----hCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhc--CCceEEEE
Q 003094 257 ITLDMGLLVAGTKYRGEFEERLKKLMEEIK----QSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLA--RGELQCIG 330 (848)
Q Consensus 257 ~~~~~~~l~~~~~~~g~~~~~l~~l~~~~~----~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~--~~~v~vI~ 330 (848)
++++.++-.+ ..-...+++ .|..-+ .+...|+++||+|.+. ..++..|++.++ .....+..
T Consensus 82 LELNASdeRG----IDvVRn~IK-~FAQ~kv~lp~grhKIiILDEADSMT--------~gAQQAlRRtMEiyS~ttRFal 148 (333)
T KOG0991|consen 82 LELNASDERG----IDVVRNKIK-MFAQKKVTLPPGRHKIIILDEADSMT--------AGAQQALRRTMEIYSNTTRFAL 148 (333)
T ss_pred hhccCccccc----cHHHHHHHH-HHHHhhccCCCCceeEEEeeccchhh--------hHHHHHHHHHHHHHcccchhhh
Confidence 5666654331 112223332 333322 2445699999999994 347888998887 66678888
Q ss_pred eeChHHHHhhhhcChhhhcccCCCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCChhhHHH
Q 003094 331 ATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAID 410 (848)
Q Consensus 331 atn~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~p~~a~~ 410 (848)
++|..+ .+=..+.+||..+.+...+..+...-+....+ ..++.|+++.++++...++|.... ++.
T Consensus 149 aCN~s~-----KIiEPIQSRCAiLRysklsd~qiL~Rl~~v~k----~Ekv~yt~dgLeaiifta~GDMRQ------alN 213 (333)
T KOG0991|consen 149 ACNQSE-----KIIEPIQSRCAILRYSKLSDQQILKRLLEVAK----AEKVNYTDDGLEAIIFTAQGDMRQ------ALN 213 (333)
T ss_pred hhcchh-----hhhhhHHhhhHhhhhcccCHHHHHHHHHHHHH----HhCCCCCcchHHHhhhhccchHHH------HHH
Confidence 999887 57789999999999999999887766666655 578999999999999888776433 555
Q ss_pred HHHHHhh
Q 003094 411 LIDEAGS 417 (848)
Q Consensus 411 ll~~a~~ 417 (848)
.|....+
T Consensus 214 nLQst~~ 220 (333)
T KOG0991|consen 214 NLQSTVN 220 (333)
T ss_pred HHHHHhc
Confidence 5555443
No 120
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.70 E-value=2.5e-16 Score=185.89 Aligned_cols=200 Identities=25% Similarity=0.329 Sum_probs=150.5
Q ss_pred hhhhhhhcCCCCCccCChHHHH---HHHHHhccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCC
Q 003094 186 NLTKLAEEGKLDPVVGRQPQIE---RVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMG 262 (848)
Q Consensus 186 ~l~~~~~~~~ld~iiG~~~~~~---~l~~~l~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~ 262 (848)
+|.+++||.+|++++|++..+. .+...+......+++|+||||||||++|+.+++.+. .+++.+++.
T Consensus 17 PLaek~RP~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~----------~~f~~lna~ 86 (725)
T PRK13341 17 PLADRLRPRTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTR----------AHFSSLNAV 86 (725)
T ss_pred ChHHhcCCCcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhc----------Ccceeehhh
Confidence 6999999999999999999884 577778878888999999999999999999999873 345555543
Q ss_pred cccccccccchHHHHHHHHHHHHHh-CCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCCceEEEEeeChHHHHhhh
Q 003094 263 LLVAGTKYRGEFEERLKKLMEEIKQ-SDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATTLDEYRKHI 341 (848)
Q Consensus 263 ~l~~~~~~~g~~~~~l~~l~~~~~~-~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~atn~~~~~~~~ 341 (848)
. .+. .+....+......... ....+|||||+|.+. ...++.|++.++.+.+++|++|+...+ .
T Consensus 87 ~--~~i---~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln--------~~qQdaLL~~lE~g~IiLI~aTTenp~---~ 150 (725)
T PRK13341 87 L--AGV---KDLRAEVDRAKERLERHGKRTILFIDEVHRFN--------KAQQDALLPWVENGTITLIGATTENPY---F 150 (725)
T ss_pred h--hhh---HHHHHHHHHHHHHhhhcCCceEEEEeChhhCC--------HHHHHHHHHHhcCceEEEEEecCCChH---h
Confidence 2 111 1112222222111111 345699999999984 336788889999999999998877553 3
Q ss_pred hcChhhhcccCCCcCCCCCHHHHHHHHHHHHHHHhh---hhcCCCChHHHHHHHhhhhcccccCCChhhHHHHHHHHhh
Q 003094 342 EKDPALERRFQPVKVPEPSVDETIQILKGLRERYEI---HHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGS 417 (848)
Q Consensus 342 ~~d~al~~Rf~~i~~~~p~~~e~~~Il~~~~~~~~~---~~~~~~s~~~l~~l~~~s~~~~~~~~~p~~a~~ll~~a~~ 417 (848)
.+++++.+|+..+.|++++.+++..+++..+..... ..++.++++++..++..+.|. .+.++.+|+.++.
T Consensus 151 ~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD------~R~lln~Le~a~~ 223 (725)
T PRK13341 151 EVNKALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGD------ARSLLNALELAVE 223 (725)
T ss_pred hhhhHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCC------HHHHHHHHHHHHH
Confidence 678999999999999999999999999988764322 345789999999999987654 3457778877653
No 121
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.69 E-value=8e-16 Score=177.19 Aligned_cols=200 Identities=20% Similarity=0.188 Sum_probs=153.9
Q ss_pred hhhhhhcCCCCCccCChHHHHHHHHHhccCCCCC-cEEECCCCCcHHHHHHHHHHHhhCCCCCCC---------------
Q 003094 187 LTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNN-PCLIGEPGVGKTAIAEGLAQRIASGDVPDT--------------- 250 (848)
Q Consensus 187 l~~~~~~~~ld~iiG~~~~~~~l~~~l~~~~~~~-iLL~GppGtGKT~la~~la~~l~~~~~~~~--------------- 250 (848)
|.+++||.+|++++|++..++.|...+......| +||+||+|||||++|+.+|+.+++...+..
T Consensus 3 l~~kyRP~~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~ 82 (584)
T PRK14952 3 LYRKYRPATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPN 82 (584)
T ss_pred HHHHhCCCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcc
Confidence 5688999999999999999999999999988888 489999999999999999999986322110
Q ss_pred -CCCceEEEEeCCcccccccccchHHHHHHHHHHHHH----hCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcC--
Q 003094 251 -IEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIK----QSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR-- 323 (848)
Q Consensus 251 -l~~~~v~~~~~~~l~~~~~~~g~~~~~l~~l~~~~~----~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~-- 323 (848)
-....+++++.+... . ...++.+.+.+. .+...|+||||+|.|. ...++.|+..++.
T Consensus 83 ~~~~~dvieidaas~~----g----vd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt--------~~A~NALLK~LEEpp 146 (584)
T PRK14952 83 GPGSIDVVELDAASHG----G----VDDTRELRDRAFYAPAQSRYRIFIVDEAHMVT--------TAGFNALLKIVEEPP 146 (584)
T ss_pred cCCCceEEEecccccc----C----HHHHHHHHHHHHhhhhcCCceEEEEECCCcCC--------HHHHHHHHHHHhcCC
Confidence 112456666543211 1 122344444332 2445699999999994 3478899999985
Q ss_pred CceEEEEeeChHHHHhhhhcChhhhcccCCCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCC
Q 003094 324 GELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRF 403 (848)
Q Consensus 324 ~~v~vI~atn~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~ 403 (848)
..+++|++|+..+ .+.+.+.+|+..+.|..++.++..+.+..++++ .++.++++++..++..+.+-
T Consensus 147 ~~~~fIL~tte~~-----kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~----egi~i~~~al~~Ia~~s~Gd----- 212 (584)
T PRK14952 147 EHLIFIFATTEPE-----KVLPTIRSRTHHYPFRLLPPRTMRALIARICEQ----EGVVVDDAVYPLVIRAGGGS----- 212 (584)
T ss_pred CCeEEEEEeCChH-----hhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC-----
Confidence 6788888887775 678999999999999999999998888877763 46788999999999887764
Q ss_pred ChhhHHHHHHHHhh
Q 003094 404 LPDKAIDLIDEAGS 417 (848)
Q Consensus 404 ~p~~a~~ll~~a~~ 417 (848)
++.++.+|+..+.
T Consensus 213 -lR~aln~Ldql~~ 225 (584)
T PRK14952 213 -PRDTLSVLDQLLA 225 (584)
T ss_pred -HHHHHHHHHHHHh
Confidence 4458888888754
No 122
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.69 E-value=5.3e-16 Score=171.98 Aligned_cols=202 Identities=22% Similarity=0.203 Sum_probs=150.6
Q ss_pred hhhhhhhhcCCCCCccCChHHHHHHHHHhccCCCCCc-EEECCCCCcHHHHHHHHHHHhhCCCCCCC-------------
Q 003094 185 TNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNP-CLIGEPGVGKTAIAEGLAQRIASGDVPDT------------- 250 (848)
Q Consensus 185 ~~l~~~~~~~~ld~iiG~~~~~~~l~~~l~~~~~~~i-LL~GppGtGKT~la~~la~~l~~~~~~~~------------- 250 (848)
..|.+++||.+|++++|++..++.+...+..+...|. ||+||||+|||++|+.+|+.+.+......
T Consensus 4 ~~l~~kyrP~~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~ 83 (363)
T PRK14961 4 QILARKWRPQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIE 83 (363)
T ss_pred HHHHHHhCCCchhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHh
Confidence 3589999999999999999999999999988777775 89999999999999999999874321100
Q ss_pred -CCCceEEEEeCCcccccccccchHHHHHHHHHHHHHh----CCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcC--
Q 003094 251 -IEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQ----SDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR-- 323 (848)
Q Consensus 251 -l~~~~v~~~~~~~l~~~~~~~g~~~~~l~~l~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~-- 323 (848)
.....++.++.+.. .....++.+.+.+.. +...|+||||+|.+. ....+.|+..++.
T Consensus 84 ~~~~~d~~~~~~~~~--------~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~--------~~a~naLLk~lEe~~ 147 (363)
T PRK14961 84 KGLCLDLIEIDAASR--------TKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLS--------RHSFNALLKTLEEPP 147 (363)
T ss_pred cCCCCceEEeccccc--------CCHHHHHHHHHHHhcCcccCCceEEEEEChhhcC--------HHHHHHHHHHHhcCC
Confidence 00123444433210 112335555555432 334699999999984 3366778888873
Q ss_pred CceEEEEeeChHHHHhhhhcChhhhcccCCCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCC
Q 003094 324 GELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRF 403 (848)
Q Consensus 324 ~~v~vI~atn~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~ 403 (848)
+.+.+|.+|+..+ .+.+++.+||..++|++|+.++..++++..+++ .++.++++++..++..+.|.
T Consensus 148 ~~~~fIl~t~~~~-----~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~----~g~~i~~~al~~ia~~s~G~----- 213 (363)
T PRK14961 148 QHIKFILATTDVE-----KIPKTILSRCLQFKLKIISEEKIFNFLKYILIK----ESIDTDEYALKLIAYHAHGS----- 213 (363)
T ss_pred CCeEEEEEcCChH-----hhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC-----
Confidence 5677777777665 578899999999999999999999999987774 46788999999999987654
Q ss_pred ChhhHHHHHHHHhh
Q 003094 404 LPDKAIDLIDEAGS 417 (848)
Q Consensus 404 ~p~~a~~ll~~a~~ 417 (848)
++.++.+++.++.
T Consensus 214 -~R~al~~l~~~~~ 226 (363)
T PRK14961 214 -MRDALNLLEHAIN 226 (363)
T ss_pred -HHHHHHHHHHHHH
Confidence 5568888887754
No 123
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.69 E-value=2.4e-16 Score=179.20 Aligned_cols=192 Identities=19% Similarity=0.285 Sum_probs=131.5
Q ss_pred HHHHHHhhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCC----CceE-Eecc
Q 003094 523 LKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSE----EAMI-RLDM 597 (848)
Q Consensus 523 ~~l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~----~~~i-~i~~ 597 (848)
.++++..+++|+||+.+++.|.+++... +..+.+||+||+|||||++|+++|+.+.+.. .++- +-+|
T Consensus 7 rKyRPktFddVIGQe~vv~~L~~aI~~g--------rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC 78 (702)
T PRK14960 7 RKYRPRNFNELVGQNHVSRALSSALERG--------RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATC 78 (702)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHcC--------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHH
Confidence 4677778899999999999999888743 2224689999999999999999999986532 1111 1122
Q ss_pred cccccccchhcccCCC-CCCcccccccchhHHHH----cCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeec
Q 003094 598 SEFMERHTVSKLIGSP-PGYVGYTEGGQLTEAVR----RRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDF 672 (848)
Q Consensus 598 ~~~~~~~~~~~l~g~~-~g~~g~~~~~~l~~~~~----~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~ 672 (848)
..+.....+ .++--. ....+....+.+.+.+. .+.+.|+||||+|+++...+|.|++.||+. .
T Consensus 79 ~~I~~g~hp-DviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEP-----------P 146 (702)
T PRK14960 79 KAVNEGRFI-DLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEP-----------P 146 (702)
T ss_pred HHHhcCCCC-ceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcC-----------C
Confidence 222211111 111000 01112222222323222 245679999999999999999999999982 2
Q ss_pred CCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHHHH
Q 003094 673 KNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIM 752 (848)
Q Consensus 673 ~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~~~ 752 (848)
.++.||++|+... .+.+.+++|| ..+.|.+++.+++.+.+...
T Consensus 147 ~~v~FILaTtd~~------------------------------------kIp~TIlSRC-q~feFkpLs~eEI~k~L~~I 189 (702)
T PRK14960 147 EHVKFLFATTDPQ------------------------------------KLPITVISRC-LQFTLRPLAVDEITKHLGAI 189 (702)
T ss_pred CCcEEEEEECChH------------------------------------hhhHHHHHhh-heeeccCCCHHHHHHHHHHH
Confidence 5678888886322 1347788999 89999999999999999887
Q ss_pred HHHHHHHHhcCCCeEeecHHHHHHHHHc
Q 003094 753 LKEVFDRLKTKDIELQVTERFRERVVEE 780 (848)
Q Consensus 753 l~~~~~~~~~~~~~l~i~~~a~~~l~~~ 780 (848)
+.+ ..+.++++++..|+..
T Consensus 190 l~k---------EgI~id~eAL~~IA~~ 208 (702)
T PRK14960 190 LEK---------EQIAADQDAIWQIAES 208 (702)
T ss_pred HHH---------cCCCCCHHHHHHHHHH
Confidence 765 2356899999999984
No 124
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.69 E-value=9.1e-16 Score=177.24 Aligned_cols=202 Identities=20% Similarity=0.215 Sum_probs=153.4
Q ss_pred hhhhhhhcCCCCCccCChHHHHHHHHHhccCCCCCc-EEECCCCCcHHHHHHHHHHHhhCCCCCC---------------
Q 003094 186 NLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNP-CLIGEPGVGKTAIAEGLAQRIASGDVPD--------------- 249 (848)
Q Consensus 186 ~l~~~~~~~~ld~iiG~~~~~~~l~~~l~~~~~~~i-LL~GppGtGKT~la~~la~~l~~~~~~~--------------- 249 (848)
-|.+++||.+|++++|++..++.|.+.+......|. ||+||+|+|||++|+.+|+.+++.....
T Consensus 5 vla~KyRP~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C 84 (618)
T PRK14951 5 VLARKYRPRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQAC 84 (618)
T ss_pred HHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHH
Confidence 478999999999999999999999999998888776 8999999999999999999998632100
Q ss_pred ----CCCCceEEEEeCCcccccccccchHHHHHHHHHHHHHh----CCCeEEEEcccchhhhCCCCCchHHHHHHHhhhh
Q 003094 250 ----TIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQ----SDEIILFIDEVHTLIGAGAAEGAIDAANILKPSL 321 (848)
Q Consensus 250 ----~l~~~~v~~~~~~~l~~~~~~~g~~~~~l~~l~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l 321 (848)
......++++|...- .+ ...++.+++.+.. +...|++|||+|.|. ....|.|+..+
T Consensus 85 ~~i~~g~h~D~~eldaas~------~~--Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls--------~~a~NaLLKtL 148 (618)
T PRK14951 85 RDIDSGRFVDYTELDAASN------RG--VDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLT--------NTAFNAMLKTL 148 (618)
T ss_pred HHHHcCCCCceeecCcccc------cC--HHHHHHHHHHHHhCcccCCceEEEEEChhhCC--------HHHHHHHHHhc
Confidence 001224455543221 11 2235555555432 335699999999995 34688888888
Q ss_pred cC--CceEEEEeeChHHHHhhhhcChhhhcccCCCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhccc
Q 003094 322 AR--GELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYI 399 (848)
Q Consensus 322 ~~--~~v~vI~atn~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~ 399 (848)
+. +.+.+|++|+.+. .+.+.+++||..+.|..++.++..+.++..+. ..++.++++++..+++.+.|-
T Consensus 149 EEPP~~~~fIL~Ttd~~-----kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~----~egi~ie~~AL~~La~~s~Gs- 218 (618)
T PRK14951 149 EEPPEYLKFVLATTDPQ-----KVPVTVLSRCLQFNLRPMAPETVLEHLTQVLA----AENVPAEPQALRLLARAARGS- 218 (618)
T ss_pred ccCCCCeEEEEEECCch-----hhhHHHHHhceeeecCCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHcCCC-
Confidence 84 5678888887665 46778999999999999999999988887776 357889999999999988765
Q ss_pred ccCCChhhHHHHHHHHhhH
Q 003094 400 SDRFLPDKAIDLIDEAGSR 418 (848)
Q Consensus 400 ~~~~~p~~a~~ll~~a~~~ 418 (848)
.++++.+++.++..
T Consensus 219 -----lR~al~lLdq~ia~ 232 (618)
T PRK14951 219 -----MRDALSLTDQAIAF 232 (618)
T ss_pred -----HHHHHHHHHHHHHh
Confidence 44588888877643
No 125
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.69 E-value=3e-16 Score=181.51 Aligned_cols=192 Identities=19% Similarity=0.289 Sum_probs=132.5
Q ss_pred HHHHHHhhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCC----CceEEe-cc
Q 003094 523 LKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSE----EAMIRL-DM 597 (848)
Q Consensus 523 ~~l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~----~~~i~i-~~ 597 (848)
.++++..+++|+||+.++..|.+.+...+ -.+.+||+||+|||||++|+++|+.+++.. .++..+ .|
T Consensus 8 ~KyRP~~f~divGQe~vv~~L~~~l~~~r--------l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C 79 (647)
T PRK07994 8 RKWRPQTFAEVVGQEHVLTALANALDLGR--------LHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNC 79 (647)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHcCC--------CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHH
Confidence 45677788999999999999998887532 113479999999999999999999997632 122111 12
Q ss_pred cccccccchhc-ccCCCCCCcccccccchhHHHH----cCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeec
Q 003094 598 SEFMERHTVSK-LIGSPPGYVGYTEGGQLTEAVR----RRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDF 672 (848)
Q Consensus 598 ~~~~~~~~~~~-l~g~~~g~~g~~~~~~l~~~~~----~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~ 672 (848)
..+........ .+.. ....+.++.+.+.+.+. .+.+.|+||||+|+++.+.+|.||+.||+ +.
T Consensus 80 ~~i~~g~~~D~ieida-as~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEE-----------Pp 147 (647)
T PRK07994 80 REIEQGRFVDLIEIDA-ASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE-----------PP 147 (647)
T ss_pred HHHHcCCCCCceeecc-cccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHc-----------CC
Confidence 22211111110 0111 11122222233333333 24577999999999999999999999998 33
Q ss_pred CCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHHHH
Q 003094 673 KNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIM 752 (848)
Q Consensus 673 ~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~~~ 752 (848)
.+++||++|+.... +.+.+++|| ..+.|.+++.+++...+...
T Consensus 148 ~~v~FIL~Tt~~~k------------------------------------Ll~TI~SRC-~~~~f~~Ls~~ei~~~L~~i 190 (647)
T PRK07994 148 EHVKFLLATTDPQK------------------------------------LPVTILSRC-LQFHLKALDVEQIRQQLEHI 190 (647)
T ss_pred CCeEEEEecCCccc------------------------------------cchHHHhhh-eEeeCCCCCHHHHHHHHHHH
Confidence 67889888863332 457899999 99999999999999988877
Q ss_pred HHHHHHHHhcCCCeEeecHHHHHHHHHc
Q 003094 753 LKEVFDRLKTKDIELQVTERFRERVVEE 780 (848)
Q Consensus 753 l~~~~~~~~~~~~~l~i~~~a~~~l~~~ 780 (848)
+.. ..+.++++++..|+..
T Consensus 191 l~~---------e~i~~e~~aL~~Ia~~ 209 (647)
T PRK07994 191 LQA---------EQIPFEPRALQLLARA 209 (647)
T ss_pred HHH---------cCCCCCHHHHHHHHHH
Confidence 754 1345788999888873
No 126
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.69 E-value=7.3e-16 Score=175.87 Aligned_cols=202 Identities=22% Similarity=0.230 Sum_probs=153.4
Q ss_pred hhhhhhhcCCCCCccCChHHHHHHHHHhccCCCCC-cEEECCCCCcHHHHHHHHHHHhhCCCCCC--------------C
Q 003094 186 NLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNN-PCLIGEPGVGKTAIAEGLAQRIASGDVPD--------------T 250 (848)
Q Consensus 186 ~l~~~~~~~~ld~iiG~~~~~~~l~~~l~~~~~~~-iLL~GppGtGKT~la~~la~~l~~~~~~~--------------~ 250 (848)
.|.+++||.+|++++|++..++.|...+......| +||+||+|+|||++|+.+|+.+.+..... .
T Consensus 5 ~La~KyRP~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~ 84 (546)
T PRK14957 5 ALARKYRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINN 84 (546)
T ss_pred hHHHHHCcCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhc
Confidence 58899999999999999999999999998877766 68999999999999999999987532110 0
Q ss_pred CCCceEEEEeCCcccccccccchHHHHHHHHHHHHH----hCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcC--C
Q 003094 251 IEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIK----QSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR--G 324 (848)
Q Consensus 251 l~~~~v~~~~~~~l~~~~~~~g~~~~~l~~l~~~~~----~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~--~ 324 (848)
.....+++++...-. | ...++.+++.+. .+...|+||||+|.+. ...++.|++.++. +
T Consensus 85 ~~~~dlieidaas~~------g--vd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls--------~~a~naLLK~LEepp~ 148 (546)
T PRK14957 85 NSFIDLIEIDAASRT------G--VEETKEILDNIQYMPSQGRYKVYLIDEVHMLS--------KQSFNALLKTLEEPPE 148 (546)
T ss_pred CCCCceEEeeccccc------C--HHHHHHHHHHHHhhhhcCCcEEEEEechhhcc--------HHHHHHHHHHHhcCCC
Confidence 012245555432211 1 122344444443 2456799999999984 4478899999985 5
Q ss_pred ceEEEEeeChHHHHhhhhcChhhhcccCCCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCC
Q 003094 325 ELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFL 404 (848)
Q Consensus 325 ~v~vI~atn~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~ 404 (848)
.+.+|++|+... .+.+.+++||..++|.+++.++....+...+++ .++.++++++..++..+.|-
T Consensus 149 ~v~fIL~Ttd~~-----kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~----egi~~e~~Al~~Ia~~s~Gd------ 213 (546)
T PRK14957 149 YVKFILATTDYH-----KIPVTILSRCIQLHLKHISQADIKDQLKIILAK----ENINSDEQSLEYIAYHAKGS------ 213 (546)
T ss_pred CceEEEEECChh-----hhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC------
Confidence 677888887654 567789999999999999999998888887764 46889999999999988765
Q ss_pred hhhHHHHHHHHhhH
Q 003094 405 PDKAIDLIDEAGSR 418 (848)
Q Consensus 405 p~~a~~ll~~a~~~ 418 (848)
.++++.+++.+++.
T Consensus 214 lR~alnlLek~i~~ 227 (546)
T PRK14957 214 LRDALSLLDQAISF 227 (546)
T ss_pred HHHHHHHHHHHHHh
Confidence 44588888887653
No 127
>PLN03025 replication factor C subunit; Provisional
Probab=99.68 E-value=3.6e-16 Score=170.69 Aligned_cols=187 Identities=19% Similarity=0.265 Sum_probs=132.1
Q ss_pred HHHHHHhhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCC--CceEEeccccc
Q 003094 523 LKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSE--EAMIRLDMSEF 600 (848)
Q Consensus 523 ~~l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~--~~~i~i~~~~~ 600 (848)
+++++.-.++++||++++..|...+... ...|+||+||||||||++|+++|+.+++.+ ..++.+|.++.
T Consensus 5 ~kyrP~~l~~~~g~~~~~~~L~~~~~~~---------~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~ 75 (319)
T PLN03025 5 EKYRPTKLDDIVGNEDAVSRLQVIARDG---------NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDD 75 (319)
T ss_pred hhcCCCCHHHhcCcHHHHHHHHHHHhcC---------CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeeccccc
Confidence 4556667788999999998887665421 123699999999999999999999987643 23444444432
Q ss_pred ccccchhcccCCCCCCcccccccchhHHHH------cCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecCC
Q 003094 601 MERHTVSKLIGSPPGYVGYTEGGQLTEAVR------RRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKN 674 (848)
Q Consensus 601 ~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~------~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~ 674 (848)
.+...+... +..... ...+.|++|||+|.++...|+.|++.||... .+
T Consensus 76 ~~~~~vr~~---------------i~~~~~~~~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~-----------~~ 129 (319)
T PLN03025 76 RGIDVVRNK---------------IKMFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYS-----------NT 129 (319)
T ss_pred ccHHHHHHH---------------HHHHHhccccCCCCCeEEEEEechhhcCHHHHHHHHHHHhccc-----------CC
Confidence 111111111 111111 1346799999999999999999999998622 45
Q ss_pred eEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHHHHHH
Q 003094 675 TLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLK 754 (848)
Q Consensus 675 ~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~~~l~ 754 (848)
++||+++|.... +.+++.+|| .++.|++++.+++...+...++
T Consensus 130 t~~il~~n~~~~------------------------------------i~~~L~SRc-~~i~f~~l~~~~l~~~L~~i~~ 172 (319)
T PLN03025 130 TRFALACNTSSK------------------------------------IIEPIQSRC-AIVRFSRLSDQEILGRLMKVVE 172 (319)
T ss_pred ceEEEEeCCccc------------------------------------cchhHHHhh-hcccCCCCCHHHHHHHHHHHHH
Confidence 678899884332 347899999 7899999999999988877665
Q ss_pred HHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHH
Q 003094 755 EVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIM 796 (848)
Q Consensus 755 ~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~ 796 (848)
+ ..+.++++++++|+.. ..+++++++.
T Consensus 173 ~---------egi~i~~~~l~~i~~~------~~gDlR~aln 199 (319)
T PLN03025 173 A---------EKVPYVPEGLEAIIFT------ADGDMRQALN 199 (319)
T ss_pred H---------cCCCCCHHHHHHHHHH------cCCCHHHHHH
Confidence 4 2345899999999984 3355666555
No 128
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.68 E-value=2e-16 Score=180.89 Aligned_cols=192 Identities=20% Similarity=0.283 Sum_probs=132.9
Q ss_pred HHHHHHHhhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCC----CceEEe-c
Q 003094 522 LLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSE----EAMIRL-D 596 (848)
Q Consensus 522 l~~l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~----~~~i~i-~ 596 (848)
..++++.-+++|+||+++++.|.+++...+ ..+.+||+||+|||||++|+++|+.+++.. .++-.+ +
T Consensus 7 ~~kyRP~~f~divGq~~v~~~L~~~~~~~~--------l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~ 78 (509)
T PRK14958 7 ARKWRPRCFQEVIGQAPVVRALSNALDQQY--------LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCEN 78 (509)
T ss_pred HHHHCCCCHHHhcCCHHHHHHHHHHHHhCC--------CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHH
Confidence 356777889999999999999999987542 123489999999999999999999997532 121111 1
Q ss_pred ccccccccc--hhcccCCCCCCcccccccchhHHHH----cCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCcee
Q 003094 597 MSEFMERHT--VSKLIGSPPGYVGYTEGGQLTEAVR----RRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTV 670 (848)
Q Consensus 597 ~~~~~~~~~--~~~l~g~~~g~~g~~~~~~l~~~~~----~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v 670 (848)
|..+..... +..+-+ .+..+.++.+.+.+.+. .+.+.|+||||+|+++++.+|.|++.||+
T Consensus 79 C~~i~~g~~~d~~eida--as~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEe----------- 145 (509)
T PRK14958 79 CREIDEGRFPDLFEVDA--ASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEE----------- 145 (509)
T ss_pred HHHHhcCCCceEEEEcc--cccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhc-----------
Confidence 222211111 111111 11223222233333333 24567999999999999999999999998
Q ss_pred ecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHH
Q 003094 671 DFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIAD 750 (848)
Q Consensus 671 ~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~ 750 (848)
++.+++||++|+... .+.+.+++|| ..+.|.+++.+++...+.
T Consensus 146 pp~~~~fIlattd~~------------------------------------kl~~tI~SRc-~~~~f~~l~~~~i~~~l~ 188 (509)
T PRK14958 146 PPSHVKFILATTDHH------------------------------------KLPVTVLSRC-LQFHLAQLPPLQIAAHCQ 188 (509)
T ss_pred cCCCeEEEEEECChH------------------------------------hchHHHHHHh-hhhhcCCCCHHHHHHHHH
Confidence 236788998886222 1446799999 889999999999998887
Q ss_pred HHHHHHHHHHhcCCCeEeecHHHHHHHHHc
Q 003094 751 IMLKEVFDRLKTKDIELQVTERFRERVVEE 780 (848)
Q Consensus 751 ~~l~~~~~~~~~~~~~l~i~~~a~~~l~~~ 780 (848)
..+.+ ..+.+++++++.|+..
T Consensus 189 ~il~~---------egi~~~~~al~~ia~~ 209 (509)
T PRK14958 189 HLLKE---------ENVEFENAALDLLARA 209 (509)
T ss_pred HHHHH---------cCCCCCHHHHHHHHHH
Confidence 77765 2345889999999884
No 129
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.68 E-value=3.2e-15 Score=162.74 Aligned_cols=182 Identities=23% Similarity=0.300 Sum_probs=130.9
Q ss_pred CCCCccCChHHHHHHHHHhc-----cCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCccccccc
Q 003094 195 KLDPVVGRQPQIERVVQILG-----RRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTK 269 (848)
Q Consensus 195 ~ld~iiG~~~~~~~l~~~l~-----~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~~ 269 (848)
+|++++|+++++++|...+. .....+++|+||||||||++++.+|+.+. ..+...+.....
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~----------~~~~~~~~~~~~---- 67 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMG----------VNLKITSGPALE---- 67 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhC----------CCEEEeccchhc----
Confidence 57899999999999888775 34467899999999999999999999883 334333332221
Q ss_pred ccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcC--------------------CceEEE
Q 003094 270 YRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR--------------------GELQCI 329 (848)
Q Consensus 270 ~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~--------------------~~v~vI 329 (848)
..+. +...+... ..+.+|||||+|.+.+. ..+.|...++. ..+.+|
T Consensus 68 ~~~~----l~~~l~~~--~~~~vl~iDEi~~l~~~--------~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li 133 (305)
T TIGR00635 68 KPGD----LAAILTNL--EEGDVLFIDEIHRLSPA--------VEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLV 133 (305)
T ss_pred Cchh----HHHHHHhc--ccCCEEEEehHhhhCHH--------HHHHhhHHHhhhheeeeeccCccccceeecCCCeEEE
Confidence 1112 22223322 23569999999998532 34445544432 226788
Q ss_pred EeeChHHHHhhhhcChhhhcccC-CCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCChhhH
Q 003094 330 GATTLDEYRKHIEKDPALERRFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKA 408 (848)
Q Consensus 330 ~atn~~~~~~~~~~d~al~~Rf~-~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~p~~a 408 (848)
++||... .+++++.+||. .+.|++|+.++..++++..+.. .++.++++++..+++.+.++. +.+
T Consensus 134 ~~t~~~~-----~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~----~~~~~~~~al~~ia~~~~G~p------R~~ 198 (305)
T TIGR00635 134 GATTRAG-----MLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGL----LNVEIEPEAALEIARRSRGTP------RIA 198 (305)
T ss_pred EecCCcc-----ccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHH----hCCCcCHHHHHHHHHHhCCCc------chH
Confidence 8888875 57899999996 6799999999999999987763 467899999999999887764 457
Q ss_pred HHHHHHHhhHH
Q 003094 409 IDLIDEAGSRV 419 (848)
Q Consensus 409 ~~ll~~a~~~~ 419 (848)
..+++.+...+
T Consensus 199 ~~ll~~~~~~a 209 (305)
T TIGR00635 199 NRLLRRVRDFA 209 (305)
T ss_pred HHHHHHHHHHH
Confidence 77777665443
No 130
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.68 E-value=1.9e-15 Score=173.70 Aligned_cols=202 Identities=20% Similarity=0.237 Sum_probs=153.8
Q ss_pred hhhhhhhcCCCCCccCChHHHHHHHHHhccCCCCC-cEEECCCCCcHHHHHHHHHHHhhCCCCCCC--------------
Q 003094 186 NLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNN-PCLIGEPGVGKTAIAEGLAQRIASGDVPDT-------------- 250 (848)
Q Consensus 186 ~l~~~~~~~~ld~iiG~~~~~~~l~~~l~~~~~~~-iLL~GppGtGKT~la~~la~~l~~~~~~~~-------------- 250 (848)
.|..++||.+|++++|++..++.|...+..+...| +||+||+|+|||++|+.+++.+.+......
T Consensus 5 vLarKYRP~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~ 84 (709)
T PRK08691 5 VLARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDA 84 (709)
T ss_pred hHHHHhCCCCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhc
Confidence 47889999999999999999999999988776555 699999999999999999999876432110
Q ss_pred CCCceEEEEeCCcccccccccchHHHHHHHHHHHHH----hCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcC--C
Q 003094 251 IEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIK----QSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR--G 324 (848)
Q Consensus 251 l~~~~v~~~~~~~l~~~~~~~g~~~~~l~~l~~~~~----~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~--~ 324 (848)
.....+++++...- .+ ...++.+++.+. .+...|+||||+|.|. ....+.|++.++. +
T Consensus 85 g~~~DvlEidaAs~------~g--Vd~IRelle~a~~~P~~gk~KVIIIDEad~Ls--------~~A~NALLKtLEEPp~ 148 (709)
T PRK08691 85 GRYVDLLEIDAASN------TG--IDNIREVLENAQYAPTAGKYKVYIIDEVHMLS--------KSAFNAMLKTLEEPPE 148 (709)
T ss_pred cCccceEEEecccc------CC--HHHHHHHHHHHHhhhhhCCcEEEEEECccccC--------HHHHHHHHHHHHhCCC
Confidence 01123444543221 11 234555555442 2345799999999984 3467788888873 6
Q ss_pred ceEEEEeeChHHHHhhhhcChhhhcccCCCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCC
Q 003094 325 ELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFL 404 (848)
Q Consensus 325 ~v~vI~atn~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~ 404 (848)
.+.+|++|+... .+.+.+++||..+.|+.++.++....+..++++ .++.++++++..+++.+.|-
T Consensus 149 ~v~fILaTtd~~-----kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~k----Egi~id~eAL~~Ia~~A~Gs------ 213 (709)
T PRK08691 149 HVKFILATTDPH-----KVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDS----EKIAYEPPALQLLGRAAAGS------ 213 (709)
T ss_pred CcEEEEEeCCcc-----ccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHH----cCCCcCHHHHHHHHHHhCCC------
Confidence 788888887765 578899999999999999999999999888774 57889999999999988765
Q ss_pred hhhHHHHHHHHhhH
Q 003094 405 PDKAIDLIDEAGSR 418 (848)
Q Consensus 405 p~~a~~ll~~a~~~ 418 (848)
.+.++.+|+.++..
T Consensus 214 lRdAlnLLDqaia~ 227 (709)
T PRK08691 214 MRDALSLLDQAIAL 227 (709)
T ss_pred HHHHHHHHHHHHHh
Confidence 45689999887653
No 131
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=99.68 E-value=1.6e-16 Score=177.54 Aligned_cols=220 Identities=21% Similarity=0.263 Sum_probs=171.5
Q ss_pred cChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhcccCCC
Q 003094 534 IGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSP 613 (848)
Q Consensus 534 igq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~ 613 (848)
++.+..+..+.+.+++.... ..++++.|+|||||..+||++++..- ...||+-+||..+.+....++|||..
T Consensus 316 ~~~d~s~a~l~rk~~rv~~~-------~~pvll~GEtGtGKe~laraiH~~s~-~~gpfvAvNCaAip~~liesELFGy~ 387 (606)
T COG3284 316 PLLDPSRATLLRKAERVAAT-------DLPVLLQGETGTGKEVLARAIHQNSE-AAGPFVAVNCAAIPEALIESELFGYV 387 (606)
T ss_pred cccCHHHHHHHHHHHHHhhc-------CCCeEecCCcchhHHHHHHHHHhccc-ccCCeEEEEeccchHHhhhHHHhccC
Confidence 46667777777666655321 13489999999999999999999986 78999999999999999999999976
Q ss_pred CCCc-ccccccchhHHHHcCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCchhhhccC
Q 003094 614 PGYV-GYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGG 692 (848)
Q Consensus 614 ~g~~-g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~i~~~~ 692 (848)
+|.. |... ..-...+.+++++.+|+|||..++-..|..||++|++|.+++.+|.+ ...++.+|.+|+..-..+
T Consensus 388 ~GafTga~~-kG~~g~~~~A~gGtlFldeIgd~p~~~Qs~LLrVl~e~~v~p~g~~~-~~vdirvi~ath~dl~~l---- 461 (606)
T COG3284 388 AGAFTGARR-KGYKGKLEQADGGTLFLDEIGDMPLALQSRLLRVLQEGVVTPLGGTR-IKVDIRVIAATHRDLAQL---- 461 (606)
T ss_pred ccccccchh-ccccccceecCCCccHHHHhhhchHHHHHHHHHHHhhCceeccCCcc-eeEEEEEEeccCcCHHHH----
Confidence 6532 2211 12234566788999999999999999999999999999999999988 778999999998443221
Q ss_pred cccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCe-EEEcCCCCH-HHHHHHHHHHHHHHHHHHhcCCCeEeec
Q 003094 693 RRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDE-MIVFRQLTK-LEVKEIADIMLKEVFDRLKTKDIELQVT 770 (848)
Q Consensus 693 ~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~-~i~f~~l~~-~el~~I~~~~l~~~~~~~~~~~~~l~i~ 770 (848)
|+ ...|+.+|+.|+.. .|.+|||.+ .|....+.+++.+.. ...+.++
T Consensus 462 ----------------------v~---~g~fredLyyrL~~~~i~lP~lr~R~d~~~~l~~~~~~~~------~~~~~l~ 510 (606)
T COG3284 462 ----------------------VE---QGRFREDLYYRLNAFVITLPPLRERSDRIPLLDRILKREN------DWRLQLD 510 (606)
T ss_pred ----------------------HH---cCCchHHHHHHhcCeeeccCchhcccccHHHHHHHHHHcc------CCCccCC
Confidence 11 23589999999954 588899966 344555555554432 2457799
Q ss_pred HHHHHHHHHccCCCCCCchHHHHHHHHHHH
Q 003094 771 ERFRERVVEEGYNPSYGARPLRRAIMRLLE 800 (848)
Q Consensus 771 ~~a~~~l~~~~~~~~~g~r~L~~~i~~~l~ 800 (848)
++++..|.. |.|++|.|+|.++|+.+..
T Consensus 511 ~~~~~~l~~--~~WPGNirel~~v~~~~~~ 538 (606)
T COG3284 511 DDALARLLA--YRWPGNIRELDNVIERLAA 538 (606)
T ss_pred HHHHHHHHh--CCCCCcHHHHHHHHHHHHH
Confidence 999999999 9999999999999986543
No 132
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.68 E-value=2.7e-16 Score=176.84 Aligned_cols=208 Identities=15% Similarity=0.166 Sum_probs=140.1
Q ss_pred HHHHHHhhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCC----ceE-Eecc
Q 003094 523 LKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEE----AMI-RLDM 597 (848)
Q Consensus 523 ~~l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~----~~i-~i~~ 597 (848)
.++++..+++++||+.+++.+.+++... +...++||+||+|+|||++|+++|+.+++... ++- +-+|
T Consensus 5 ~KyRP~~f~dliGQe~vv~~L~~a~~~~--------ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C 76 (491)
T PRK14964 5 LKYRPSSFKDLVGQDVLVRILRNAFTLN--------KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNC 76 (491)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHcC--------CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHH
Confidence 4667778899999999999888777643 22246999999999999999999998854322 111 1122
Q ss_pred cccccccchhcccCCCCCCcccccccchhHHHHc----CCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecC
Q 003094 598 SEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRR----RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFK 673 (848)
Q Consensus 598 ~~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~----~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~ 673 (848)
..+.+.....-+.-...+..|.++.+.+.+.+.. +.+.|++|||+|.++.+.+|.|++.||+ +..
T Consensus 77 ~~i~~~~~~Dv~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEe-----------Pp~ 145 (491)
T PRK14964 77 ISIKNSNHPDVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEE-----------PAP 145 (491)
T ss_pred HHHhccCCCCEEEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhC-----------CCC
Confidence 2222111111111111112333333344444433 3467999999999999999999999998 236
Q ss_pred CeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHHHHH
Q 003094 674 NTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIML 753 (848)
Q Consensus 674 ~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~~~l 753 (848)
+++||++|+... .+.+.+++|| ..+.|.+++.+++...+...+
T Consensus 146 ~v~fIlatte~~------------------------------------Kl~~tI~SRc-~~~~f~~l~~~el~~~L~~ia 188 (491)
T PRK14964 146 HVKFILATTEVK------------------------------------KIPVTIISRC-QRFDLQKIPTDKLVEHLVDIA 188 (491)
T ss_pred CeEEEEEeCChH------------------------------------HHHHHHHHhh-eeeecccccHHHHHHHHHHHH
Confidence 788888885211 1457899999 899999999999999887777
Q ss_pred HHHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHHHH
Q 003094 754 KEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRL 798 (848)
Q Consensus 754 ~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~ 798 (848)
.+ ..+.+++++++.|+..+- ++.|.+.+.+++.
T Consensus 189 ~~---------Egi~i~~eAL~lIa~~s~---GslR~alslLdql 221 (491)
T PRK14964 189 KK---------ENIEHDEESLKLIAENSS---GSMRNALFLLEQA 221 (491)
T ss_pred HH---------cCCCCCHHHHHHHHHHcC---CCHHHHHHHHHHH
Confidence 65 234589999999998421 3445554544443
No 133
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=3.2e-16 Score=168.89 Aligned_cols=201 Identities=21% Similarity=0.333 Sum_probs=144.9
Q ss_pred HHhhccccChHHHHHHHHHHHHHH-------HccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccc
Q 003094 527 ETLHKRVIGQDEAVKAISRAIRRA-------RVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSE 599 (848)
Q Consensus 527 ~~l~~~vigq~~~~~~l~~~~~~~-------~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~ 599 (848)
+.-+++|.|.+++++.+.+.+... +.|.+- |.+ +||+||||||||.|||++|-.- +.||+....++
T Consensus 300 nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKL---PKG-VLLvGPPGTGKTlLARAvAGEA---~VPFF~~sGSE 372 (752)
T KOG0734|consen 300 NVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKL---PKG-VLLVGPPGTGKTLLARAVAGEA---GVPFFYASGSE 372 (752)
T ss_pred ccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcC---CCc-eEEeCCCCCchhHHHHHhhccc---CCCeEeccccc
Confidence 345778889999988777766543 234333 333 8999999999999999999765 88999988888
Q ss_pred cccccchhcccCCCCCCcccccc--cchhHHHHcCCCeEEEEcCCCcCCh-----------HHHHHHHhhhcCcEEEcCC
Q 003094 600 FMERHTVSKLIGSPPGYVGYTEG--GQLTEAVRRRPYTVVLFDEIEKAHP-----------DVFNMMLQILEDGRLTDSK 666 (848)
Q Consensus 600 ~~~~~~~~~l~g~~~g~~g~~~~--~~l~~~~~~~~~~Vl~lDEid~l~~-----------~~~~~Ll~~le~g~~~~~~ 666 (848)
|.+. |||.... +.||.+++...+|||||||||.... ..+|+||-.|+...-+
T Consensus 373 FdEm------------~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qN--- 437 (752)
T KOG0734|consen 373 FDEM------------FVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQN--- 437 (752)
T ss_pred hhhh------------hhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcC---
Confidence 8553 5554333 6789999999999999999998732 4788888888874422
Q ss_pred CceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhh--hccCeEEEcCCCCHHH
Q 003094 667 GRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFL--NRLDEMIVFRQLTKLE 744 (848)
Q Consensus 667 g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll--~R~d~~i~f~~l~~~e 744 (848)
..+|||.+||+... ++++|. +|||..|..+.++-.=
T Consensus 438 ------eGiIvigATNfpe~------------------------------------LD~AL~RPGRFD~~v~Vp~PDv~G 475 (752)
T KOG0734|consen 438 ------EGIIVIGATNFPEA------------------------------------LDKALTRPGRFDRHVTVPLPDVRG 475 (752)
T ss_pred ------CceEEEeccCChhh------------------------------------hhHHhcCCCccceeEecCCCCccc
Confidence 35688999996553 445555 7999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHHHHHHHHH
Q 003094 745 VKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSM 803 (848)
Q Consensus 745 l~~I~~~~l~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~l~~~l 803 (848)
..+|+..++.++. ..-.+|+.+ ...| .+.+..-+|.+.|++....+-
T Consensus 476 R~eIL~~yl~ki~-------~~~~VD~~i----iARG-T~GFsGAdLaNlVNqAAlkAa 522 (752)
T KOG0734|consen 476 RTEILKLYLSKIP-------LDEDVDPKI----IARG-TPGFSGADLANLVNQAALKAA 522 (752)
T ss_pred HHHHHHHHHhcCC-------cccCCCHhH----hccC-CCCCchHHHHHHHHHHHHHHH
Confidence 9999988886521 111244443 3333 444555678888887665443
No 134
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.68 E-value=4e-16 Score=186.29 Aligned_cols=207 Identities=20% Similarity=0.262 Sum_probs=139.0
Q ss_pred HHHHHHhhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCC----ceEEe-cc
Q 003094 523 LKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEE----AMIRL-DM 597 (848)
Q Consensus 523 ~~l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~----~~i~i-~~ 597 (848)
.+++...+++||||+.+++.|.+.+...+ ..+.+||+||+|||||++|++||+.+++... +|-.+ .|
T Consensus 7 ~KyRP~~f~eiiGqe~v~~~L~~~i~~~r--------i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC 78 (824)
T PRK07764 7 RRYRPATFAEVIGQEHVTEPLSTALDSGR--------INHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSC 78 (824)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHhCC--------CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHH
Confidence 56777788999999999999999887432 1134899999999999999999999976321 22111 12
Q ss_pred cccccc----cchhcccCCCCCCcccccccchhHHHH----cCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCce
Q 003094 598 SEFMER----HTVSKLIGSPPGYVGYTEGGQLTEAVR----RRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRT 669 (848)
Q Consensus 598 ~~~~~~----~~~~~l~g~~~g~~g~~~~~~l~~~~~----~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~ 669 (848)
..+... .++..+-+. ...|.++.+.+.+.+. ...+.|+||||+|+++...+|.||++||+
T Consensus 79 ~~~~~g~~~~~dv~eidaa--s~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEE---------- 146 (824)
T PRK07764 79 VALAPGGPGSLDVTEIDAA--SHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEE---------- 146 (824)
T ss_pred HHHHcCCCCCCcEEEeccc--ccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhC----------
Confidence 222111 111111111 0112222222322222 35678999999999999999999999998
Q ss_pred eecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHH
Q 003094 670 VDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIA 749 (848)
Q Consensus 670 v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~ 749 (848)
...+++||++|+.... +.+.+++|| .++.|.+++.+++.+++
T Consensus 147 -pP~~~~fIl~tt~~~k------------------------------------Ll~TIrSRc-~~v~F~~l~~~~l~~~L 188 (824)
T PRK07764 147 -PPEHLKFIFATTEPDK------------------------------------VIGTIRSRT-HHYPFRLVPPEVMRGYL 188 (824)
T ss_pred -CCCCeEEEEEeCChhh------------------------------------hhHHHHhhe-eEEEeeCCCHHHHHHHH
Confidence 2367889988862221 346799999 99999999999999988
Q ss_pred HHHHHHHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHHHHH
Q 003094 750 DIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLL 799 (848)
Q Consensus 750 ~~~l~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~l 799 (848)
..++.+ ..+.++++++.+|+..+. .+.|...+.+++++
T Consensus 189 ~~il~~---------EGv~id~eal~lLa~~sg---GdlR~Al~eLEKLi 226 (824)
T PRK07764 189 ERICAQ---------EGVPVEPGVLPLVIRAGG---GSVRDSLSVLDQLL 226 (824)
T ss_pred HHHHHH---------cCCCCCHHHHHHHHHHcC---CCHHHHHHHHHHHH
Confidence 776654 234578999998888532 23455555555443
No 135
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.68 E-value=1.1e-15 Score=173.64 Aligned_cols=204 Identities=21% Similarity=0.242 Sum_probs=155.7
Q ss_pred hhhhhhhhcCCCCCccCChHHHHHHHHHhccCC-CCCcEEECCCCCcHHHHHHHHHHHhhCCCCC---------------
Q 003094 185 TNLTKLAEEGKLDPVVGRQPQIERVVQILGRRT-KNNPCLIGEPGVGKTAIAEGLAQRIASGDVP--------------- 248 (848)
Q Consensus 185 ~~l~~~~~~~~ld~iiG~~~~~~~l~~~l~~~~-~~~iLL~GppGtGKT~la~~la~~l~~~~~~--------------- 248 (848)
..|..++||.+|++++|++..++.|...+.... +.++||+||||||||++|+.+|+.+++....
T Consensus 9 ~~la~kyRP~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C 88 (507)
T PRK06645 9 IPFARKYRPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNC 88 (507)
T ss_pred cchhhhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHH
Confidence 468899999999999999999999988766654 4578899999999999999999999764210
Q ss_pred ---CCCCCceEEEEeCCcccccccccchHHHHHHHHHHHHHh----CCCeEEEEcccchhhhCCCCCchHHHHHHHhhhh
Q 003094 249 ---DTIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQ----SDEIILFIDEVHTLIGAGAAEGAIDAANILKPSL 321 (848)
Q Consensus 249 ---~~l~~~~v~~~~~~~l~~~~~~~g~~~~~l~~l~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l 321 (848)
.......++++|..+-. ....++.+++.+.. +...|+||||+|.|. ....+.|+..+
T Consensus 89 ~~i~~~~h~Dv~eidaas~~--------~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls--------~~a~naLLk~L 152 (507)
T PRK06645 89 ISFNNHNHPDIIEIDAASKT--------SVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLS--------KGAFNALLKTL 152 (507)
T ss_pred HHHhcCCCCcEEEeeccCCC--------CHHHHHHHHHHHHhccccCCcEEEEEEChhhcC--------HHHHHHHHHHH
Confidence 01112355666543211 12345566666542 345699999999984 34677888888
Q ss_pred cC--CceEEEEeeChHHHHhhhhcChhhhcccCCCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhccc
Q 003094 322 AR--GELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYI 399 (848)
Q Consensus 322 ~~--~~v~vI~atn~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~ 399 (848)
+. ..+.+|++|+... .+.+.+.+|+..++|..++.++...+++..+++ .++.++++++..++..+.+.
T Consensus 153 Eepp~~~vfI~aTte~~-----kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~----egi~ie~eAL~~Ia~~s~Gs- 222 (507)
T PRK06645 153 EEPPPHIIFIFATTEVQ-----KIPATIISRCQRYDLRRLSFEEIFKLLEYITKQ----ENLKTDIEALRIIAYKSEGS- 222 (507)
T ss_pred hhcCCCEEEEEEeCChH-----HhhHHHHhcceEEEccCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC-
Confidence 74 5678887787665 578899999999999999999999999988874 57889999999999987764
Q ss_pred ccCCChhhHHHHHHHHhhHH
Q 003094 400 SDRFLPDKAIDLIDEAGSRV 419 (848)
Q Consensus 400 ~~~~~p~~a~~ll~~a~~~~ 419 (848)
.++++.+|+.++...
T Consensus 223 -----lR~al~~Ldkai~~~ 237 (507)
T PRK06645 223 -----ARDAVSILDQAASMS 237 (507)
T ss_pred -----HHHHHHHHHHHHHhh
Confidence 456899999886543
No 136
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=2.5e-16 Score=159.96 Aligned_cols=185 Identities=26% Similarity=0.384 Sum_probs=147.0
Q ss_pred CCCCCccCChHHHHHHHHHh-------------ccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEe
Q 003094 194 GKLDPVVGRQPQIERVVQIL-------------GRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLD 260 (848)
Q Consensus 194 ~~ld~iiG~~~~~~~l~~~l-------------~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~ 260 (848)
-+++.+-|.-.++..+.+.+ +.+.|..++||||||+|||.+|+++|..+ +..++.+.
T Consensus 129 ~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~m----------g~nfl~v~ 198 (388)
T KOG0651|consen 129 ISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATM----------GVNFLKVV 198 (388)
T ss_pred cCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhc----------CCceEEee
Confidence 37888999998888887764 34677889999999999999999999998 67788888
Q ss_pred CCcccccccccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCCc---hHHHHHHHhhhhc-------CCceEEEE
Q 003094 261 MGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEG---AIDAANILKPSLA-------RGELQCIG 330 (848)
Q Consensus 261 ~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~~---~~~~~~~L~~~l~-------~~~v~vI~ 330 (848)
.+.+. .+|.|+....++..|..++...|||+|+||+|...+...+++ ...++..|..+++ .+++.+|.
T Consensus 199 ss~lv--~kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~Im 276 (388)
T KOG0651|consen 199 SSALV--DKYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIM 276 (388)
T ss_pred Hhhhh--hhhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEE
Confidence 88888 679999999999999999999999999999999876544333 3445555555553 57799999
Q ss_pred eeChHHHHhhhhcChhhhc--ccC-CCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccc
Q 003094 331 ATTLDEYRKHIEKDPALER--RFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYIS 400 (848)
Q Consensus 331 atn~~~~~~~~~~d~al~~--Rf~-~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~ 400 (848)
|||.++ .++|+|.| |++ .+++|.|+...|..|++-....+..+..+. + +++.++++++-+
T Consensus 277 atNrpd-----tLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid--~---eaivK~~d~f~g 339 (388)
T KOG0651|consen 277 ATNRPD-----TLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEID--D---EAILKLVDGFNG 339 (388)
T ss_pred ecCCcc-----ccchhhcCCccccceeccCCcchhhceeeEeecccccccccccc--H---HHHHHHHhccCh
Confidence 999999 69999999 897 899999999999998887665544343333 3 344555555533
No 137
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.67 E-value=3.4e-14 Score=173.58 Aligned_cols=67 Identities=31% Similarity=0.412 Sum_probs=62.8
Q ss_pred hhHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHhhCCCchHHHHHHHcCCChHHHHHHHHHHhcccc
Q 003094 95 FTEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRTQVIRMVGEST 161 (848)
Q Consensus 95 ~t~~a~~~l~~A~~~A~~~~~~~i~~eHlLlall~~~~~~a~~iL~~~gv~~~~l~~~~~~~~~~~~ 161 (848)
||+.+++++..|+.+|++++|.+|++||||+||+.++++.+..+|+.+|+|++.++..++..++..+
T Consensus 1 fT~~a~~vL~~A~~~A~~~~h~~V~~EHLLlaLl~~~~g~a~~iL~~~Gvd~~~l~~~l~~~l~~~~ 67 (852)
T TIGR03346 1 FTEKFQEALQAAQSLALGRDHQQIEPEHLLKALLDQEGGLARRLLQKAGVNVGALRQALEKELEKLP 67 (852)
T ss_pred CCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhCCccHHHHHHHHcCCCHHHHHHHHHHHhcccc
Confidence 7999999999999999999999999999999999999999999999999999999999988876533
No 138
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.67 E-value=1e-15 Score=175.67 Aligned_cols=227 Identities=19% Similarity=0.239 Sum_probs=169.8
Q ss_pred ccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhcccCC
Q 003094 533 VIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGS 612 (848)
Q Consensus 533 vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~ 612 (848)
++|....+..+...+.... ....+++++|++||||+++|++++......+.+|+.+||..+......+.|+|.
T Consensus 141 lig~s~~~~~~~~~i~~~~-------~~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~lfg~ 213 (441)
T PRK10365 141 MVGKSPAMQHLLSEIALVA-------PSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGH 213 (441)
T ss_pred eEecCHHHHHHHHHHhhcc-------CCCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHHhcCC
Confidence 4555566555555443321 112358999999999999999999988777899999999998776666778887
Q ss_pred CCCCcccccccchhHHHHcCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCchhhhccC
Q 003094 613 PPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGG 692 (848)
Q Consensus 613 ~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~i~~~~ 692 (848)
..|...... ..-.+.+..+.+|+||||||+.+++..|..|+++++++.+...++......++++|++|+....
T Consensus 214 ~~~~~~~~~-~~~~g~~~~a~~gtl~ldei~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~~------ 286 (441)
T PRK10365 214 EKGAFTGAD-KRREGRFVEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLA------ 286 (441)
T ss_pred CCCCcCCCC-cCCCCceeECCCCEEEEeccccCCHHHHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCHH------
Confidence 554321111 1122345567889999999999999999999999999998766655555568899999874321
Q ss_pred cccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCe-EEEcCCCCH--HHHHHHHHHHHHHHHHHHhcCCCeEee
Q 003094 693 RRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDE-MIVFRQLTK--LEVKEIADIMLKEVFDRLKTKDIELQV 769 (848)
Q Consensus 693 ~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~-~i~f~~l~~--~el~~I~~~~l~~~~~~~~~~~~~l~i 769 (848)
.......|+++|+.|+.. .|.++||.+ +|+..+++.++.++..+.... ...+
T Consensus 287 -----------------------~~~~~~~~~~~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~--~~~~ 341 (441)
T PRK10365 287 -----------------------AEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKA--VKGF 341 (441)
T ss_pred -----------------------HHHHcCCchHHHHHHhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCC--CCCc
Confidence 111123588999999955 488899965 799999999999877655321 2348
Q ss_pred cHHHHHHHHHccCCCCCCchHHHHHHHHHHH
Q 003094 770 TERFRERVVEEGYNPSYGARPLRRAIMRLLE 800 (848)
Q Consensus 770 ~~~a~~~l~~~~~~~~~g~r~L~~~i~~~l~ 800 (848)
++++++.|.. |+|++|.|+|++++++++.
T Consensus 342 ~~~a~~~L~~--~~wpgN~reL~~~~~~~~~ 370 (441)
T PRK10365 342 TPQAMDLLIH--YDWPGNIRELENAVERAVV 370 (441)
T ss_pred CHHHHHHHHh--CCCCCHHHHHHHHHHHHHH
Confidence 9999999999 9999999999999998775
No 139
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.67 E-value=2e-16 Score=176.97 Aligned_cols=210 Identities=21% Similarity=0.322 Sum_probs=153.5
Q ss_pred HHHHHHHhhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCC----CceEEe-c
Q 003094 522 LLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSE----EAMIRL-D 596 (848)
Q Consensus 522 l~~l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~----~~~i~i-~ 596 (848)
..++++..+++++||+.++..|..++...+.. +.+||.||.|||||++||.+|+.+.+.. .||..+ .
T Consensus 7 ~rKyRP~~F~evvGQe~v~~~L~nal~~~ri~--------hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~ 78 (515)
T COG2812 7 ARKYRPKTFDDVVGQEHVVKTLSNALENGRIA--------HAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCIS 78 (515)
T ss_pred HHHhCcccHHHhcccHHHHHHHHHHHHhCcch--------hhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhh
Confidence 35678888999999999999999999865432 4599999999999999999999997653 344322 2
Q ss_pred ccccccccchhcccC-CCCCCcccccccchhHHHHc----CCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceee
Q 003094 597 MSEFMERHTVSKLIG-SPPGYVGYTEGGQLTEAVRR----RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVD 671 (848)
Q Consensus 597 ~~~~~~~~~~~~l~g-~~~g~~g~~~~~~l~~~~~~----~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~ 671 (848)
|..+..... .+++- ......|.++.+.+.+.+.. +.+.|++|||+|+++...+|+||+.+|+ +
T Consensus 79 Ck~I~~g~~-~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEE-----------P 146 (515)
T COG2812 79 CKEINEGSL-IDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEE-----------P 146 (515)
T ss_pred hHhhhcCCc-ccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhccccc-----------C
Confidence 333332211 11111 11123455555556665554 3478999999999999999999999998 5
Q ss_pred cCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHHH
Q 003094 672 FKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADI 751 (848)
Q Consensus 672 ~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~~ 751 (848)
+.+++||++|.-.. .+++..++|| +.+.|..++.+++..-+..
T Consensus 147 P~hV~FIlATTe~~------------------------------------Kip~TIlSRc-q~f~fkri~~~~I~~~L~~ 189 (515)
T COG2812 147 PSHVKFILATTEPQ------------------------------------KIPNTILSRC-QRFDFKRLDLEEIAKHLAA 189 (515)
T ss_pred ccCeEEEEecCCcC------------------------------------cCchhhhhcc-ccccccCCCHHHHHHHHHH
Confidence 68999999986322 2678999999 9999999999999999988
Q ss_pred HHHHHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHHHHHH
Q 003094 752 MLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLE 800 (848)
Q Consensus 752 ~l~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~l~ 800 (848)
++.+ ..+.++++++.+|+..+ .++.|+.-+.+.+++.
T Consensus 190 i~~~---------E~I~~e~~aL~~ia~~a---~Gs~RDalslLDq~i~ 226 (515)
T COG2812 190 ILDK---------EGINIEEDALSLIARAA---EGSLRDALSLLDQAIA 226 (515)
T ss_pred HHHh---------cCCccCHHHHHHHHHHc---CCChhhHHHHHHHHHH
Confidence 8865 45668999999999842 2445665555554433
No 140
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.67 E-value=1.8e-15 Score=173.41 Aligned_cols=200 Identities=21% Similarity=0.199 Sum_probs=150.0
Q ss_pred hhhhhhhcCCCCCccCChHHHHHHHHHhccCC-CCCcEEECCCCCcHHHHHHHHHHHhhCCCCCC--------------C
Q 003094 186 NLTKLAEEGKLDPVVGRQPQIERVVQILGRRT-KNNPCLIGEPGVGKTAIAEGLAQRIASGDVPD--------------T 250 (848)
Q Consensus 186 ~l~~~~~~~~ld~iiG~~~~~~~l~~~l~~~~-~~~iLL~GppGtGKT~la~~la~~l~~~~~~~--------------~ 250 (848)
.|.+++||.+|++++|++..++.|...+.... ..++||+||+|||||++|+.+|+.+.+...+. .
T Consensus 5 ~la~KyRP~sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~ 84 (624)
T PRK14959 5 SLTARYRPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQ 84 (624)
T ss_pred hHHHHhCCCCHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhc
Confidence 68999999999999999999999999888765 56678999999999999999999997632111 0
Q ss_pred CCCceEEEEeCCcccccccccchHHHHHHHHHHHHH----hCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcC--C
Q 003094 251 IEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIK----QSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR--G 324 (848)
Q Consensus 251 l~~~~v~~~~~~~l~~~~~~~g~~~~~l~~l~~~~~----~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~--~ 324 (848)
.....+++++...- .+ ...++.+.+.+. .+...|+||||+|.|. .+.++.|++.++. +
T Consensus 85 g~hpDv~eId~a~~------~~--Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt--------~~a~naLLk~LEEP~~ 148 (624)
T PRK14959 85 GMHVDVVEIDGASN------RG--IDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLT--------REAFNALLKTLEEPPA 148 (624)
T ss_pred CCCCceEEEecccc------cC--HHHHHHHHHHHHhhhhcCCceEEEEEChHhCC--------HHHHHHHHHHhhccCC
Confidence 12234555653211 11 122333333322 2445799999999994 4467888888874 5
Q ss_pred ceEEEEeeChHHHHhhhhcChhhhcccCCCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCC
Q 003094 325 ELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFL 404 (848)
Q Consensus 325 ~v~vI~atn~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~ 404 (848)
.+++|++|+... .+.+.+.+||..+.|+.++.++...+++..+. ..++.++++++..++..+.+.
T Consensus 149 ~~ifILaTt~~~-----kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~----~egi~id~eal~lIA~~s~Gd------ 213 (624)
T PRK14959 149 RVTFVLATTEPH-----KFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLG----REGVDYDPAAVRLIARRAAGS------ 213 (624)
T ss_pred CEEEEEecCChh-----hhhHHHHhhhhccccCCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHcCCC------
Confidence 788888887765 46778999999999999999999999988766 356789999999999988765
Q ss_pred hhhHHHHHHHHh
Q 003094 405 PDKAIDLIDEAG 416 (848)
Q Consensus 405 p~~a~~ll~~a~ 416 (848)
.++++.+|+.+.
T Consensus 214 lR~Al~lLeqll 225 (624)
T PRK14959 214 VRDSMSLLGQVL 225 (624)
T ss_pred HHHHHHHHHHHH
Confidence 345888888653
No 141
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.66 E-value=2.4e-15 Score=171.45 Aligned_cols=202 Identities=20% Similarity=0.268 Sum_probs=151.6
Q ss_pred hhhhhhhhcCCCCCccCChHHHHHHHHHhccCCCCC-cEEECCCCCcHHHHHHHHHHHhhCCCCCC--------------
Q 003094 185 TNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNN-PCLIGEPGVGKTAIAEGLAQRIASGDVPD-------------- 249 (848)
Q Consensus 185 ~~l~~~~~~~~ld~iiG~~~~~~~l~~~l~~~~~~~-iLL~GppGtGKT~la~~la~~l~~~~~~~-------------- 249 (848)
..|.+++||.+|++++|++..++.+...+......| +||+||+|+|||++|+.+|+.+.+.....
T Consensus 4 ~~~~~KyRP~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~ 83 (605)
T PRK05896 4 ITFYRKYRPHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESIN 83 (605)
T ss_pred hhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHH
Confidence 368999999999999999999999999987765555 78999999999999999999997643211
Q ss_pred CCCCceEEEEeCCcccccccccchHHHHHHHHHHHHHh----CCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcC--
Q 003094 250 TIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQ----SDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR-- 323 (848)
Q Consensus 250 ~l~~~~v~~~~~~~l~~~~~~~g~~~~~l~~l~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~-- 323 (848)
......+++++.+.. .+ ...++.+.+.+.. ++..|++|||+|.|. ....+.|+..++.
T Consensus 84 ~~~h~DiieIdaas~------ig--Vd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt--------~~A~NaLLKtLEEPp 147 (605)
T PRK05896 84 TNQSVDIVELDAASN------NG--VDEIRNIIDNINYLPTTFKYKVYIIDEAHMLS--------TSAWNALLKTLEEPP 147 (605)
T ss_pred cCCCCceEEeccccc------cC--HHHHHHHHHHHHhchhhCCcEEEEEechHhCC--------HHHHHHHHHHHHhCC
Confidence 011234555543221 11 1234444444432 345689999999984 3367889998884
Q ss_pred CceEEEEeeChHHHHhhhhcChhhhcccCCCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCC
Q 003094 324 GELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRF 403 (848)
Q Consensus 324 ~~v~vI~atn~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~ 403 (848)
+.+++|++|+... .+.+.+.+||+.+.|++|+.++....+...+.+ .++.++++++..++.++.|.
T Consensus 148 ~~tvfIL~Tt~~~-----KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~k----egi~Is~eal~~La~lS~Gd----- 213 (605)
T PRK05896 148 KHVVFIFATTEFQ-----KIPLTIISRCQRYNFKKLNNSELQELLKSIAKK----EKIKIEDNAIDKIADLADGS----- 213 (605)
T ss_pred CcEEEEEECCChH-----hhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCc-----
Confidence 5677777777654 678999999999999999999999988887763 56788999999999988765
Q ss_pred ChhhHHHHHHHHhh
Q 003094 404 LPDKAIDLIDEAGS 417 (848)
Q Consensus 404 ~p~~a~~ll~~a~~ 417 (848)
++.++.+++....
T Consensus 214 -lR~AlnlLekL~~ 226 (605)
T PRK05896 214 -LRDGLSILDQLST 226 (605)
T ss_pred -HHHHHHHHHHHHh
Confidence 4458888887543
No 142
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=1e-15 Score=176.27 Aligned_cols=205 Identities=19% Similarity=0.268 Sum_probs=138.5
Q ss_pred HHHHHHhhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCC----CceEEe-cc
Q 003094 523 LKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSE----EAMIRL-DM 597 (848)
Q Consensus 523 ~~l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~----~~~i~i-~~ 597 (848)
.++++..+++|+||+++++.|.+++... +..+.+||+||+|||||++|+++|+.+++.. .++..+ .|
T Consensus 5 ~kyRP~~f~eivGq~~i~~~L~~~i~~~--------r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C 76 (584)
T PRK14952 5 RKYRPATFAEVVGQEHVTEPLSSALDAG--------RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESC 76 (584)
T ss_pred HHhCCCcHHHhcCcHHHHHHHHHHHHcC--------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHH
Confidence 5677788999999999999999988743 2223479999999999999999999987532 122211 12
Q ss_pred cccccc----cchhcccCCCCCCcccccccchhHHHH----cCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCce
Q 003094 598 SEFMER----HTVSKLIGSPPGYVGYTEGGQLTEAVR----RRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRT 669 (848)
Q Consensus 598 ~~~~~~----~~~~~l~g~~~g~~g~~~~~~l~~~~~----~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~ 669 (848)
..+... ..+..+-+. ...|.++.+.+.+.+. .+.+.|+||||+|.++...+|.|++.||+
T Consensus 77 ~~i~~~~~~~~dvieidaa--s~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEE---------- 144 (584)
T PRK14952 77 VALAPNGPGSIDVVELDAA--SHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEE---------- 144 (584)
T ss_pred HHhhcccCCCceEEEeccc--cccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhc----------
Confidence 222110 011111111 1123322233333333 24578999999999999999999999998
Q ss_pred eecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHH
Q 003094 670 VDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIA 749 (848)
Q Consensus 670 v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~ 749 (848)
+..+++||++|+... .+.+.+++|| ..+.|.+++.+++.+.+
T Consensus 145 -pp~~~~fIL~tte~~------------------------------------kll~TI~SRc-~~~~F~~l~~~~i~~~L 186 (584)
T PRK14952 145 -PPEHLIFIFATTEPE------------------------------------KVLPTIRSRT-HHYPFRLLPPRTMRALI 186 (584)
T ss_pred -CCCCeEEEEEeCChH------------------------------------hhHHHHHHhc-eEEEeeCCCHHHHHHHH
Confidence 336788998885222 2457899999 89999999999998888
Q ss_pred HHHHHHHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHHH
Q 003094 750 DIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMR 797 (848)
Q Consensus 750 ~~~l~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~ 797 (848)
...+.+ ..+.++++++.+|+..+. ++.|..-+.+++
T Consensus 187 ~~i~~~---------egi~i~~~al~~Ia~~s~---GdlR~aln~Ldq 222 (584)
T PRK14952 187 ARICEQ---------EGVVVDDAVYPLVIRAGG---GSPRDTLSVLDQ 222 (584)
T ss_pred HHHHHH---------cCCCCCHHHHHHHHHHcC---CCHHHHHHHHHH
Confidence 776654 224588999999887422 334544444444
No 143
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.66 E-value=1.2e-15 Score=180.22 Aligned_cols=201 Identities=25% Similarity=0.319 Sum_probs=149.7
Q ss_pred CCCCCccCChHHHHHHHHHhc------------cCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeC
Q 003094 194 GKLDPVVGRQPQIERVVQILG------------RRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDM 261 (848)
Q Consensus 194 ~~ld~iiG~~~~~~~l~~~l~------------~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~ 261 (848)
..++++.|.+..++++.+++. ...+++++|+||||||||+++++++.++ +.+++.++.
T Consensus 149 ~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~----------~~~f~~is~ 218 (644)
T PRK10733 149 TTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA----------KVPFFTISG 218 (644)
T ss_pred CcHHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc----------CCCEEEEeh
Confidence 346667777766666555432 2346789999999999999999999988 567888888
Q ss_pred CcccccccccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCC---Cc---hHHHHHHHhhhhc----CCceEEEEe
Q 003094 262 GLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAA---EG---AIDAANILKPSLA----RGELQCIGA 331 (848)
Q Consensus 262 ~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~---~~---~~~~~~~L~~~l~----~~~v~vI~a 331 (848)
+.+. ..+.|.....++.+|..++...|+||||||+|.+...+.. .+ .....+.|+..++ +..+++|++
T Consensus 219 ~~~~--~~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaa 296 (644)
T PRK10733 219 SDFV--EMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAA 296 (644)
T ss_pred HHhH--HhhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEe
Confidence 7776 3466777788999999999889999999999999765432 11 1234444444443 557999999
Q ss_pred eChHHHHhhhhcChhhhc--ccC-CCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCChhhH
Q 003094 332 TTLDEYRKHIEKDPALER--RFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKA 408 (848)
Q Consensus 332 tn~~~~~~~~~~d~al~~--Rf~-~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~p~~a 408 (848)
||.++ .+|+++.| ||+ .|.|+.|+.++|.+||+.+..+.... .+..+..+++.+.+|.+ .+.
T Consensus 297 TN~p~-----~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~-----~~~d~~~la~~t~G~sg-----adl 361 (644)
T PRK10733 297 TNRPD-----VLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLA-----PDIDAAIIARGTPGFSG-----ADL 361 (644)
T ss_pred cCChh-----hcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCC-----CcCCHHHHHhhCCCCCH-----HHH
Confidence 99998 69999998 997 89999999999999999888753211 12235567777777654 477
Q ss_pred HHHHHHHhhHHHH
Q 003094 409 IDLIDEAGSRVRL 421 (848)
Q Consensus 409 ~~ll~~a~~~~~~ 421 (848)
..++.+|...+..
T Consensus 362 ~~l~~eAa~~a~r 374 (644)
T PRK10733 362 ANLVNEAALFAAR 374 (644)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888765543
No 144
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=8.9e-16 Score=177.35 Aligned_cols=192 Identities=19% Similarity=0.242 Sum_probs=132.0
Q ss_pred HHHHHHhhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCC---------ceE
Q 003094 523 LKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEE---------AMI 593 (848)
Q Consensus 523 ~~l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~---------~~i 593 (848)
.++++..+++|+||+++++.|.+++...+. .+.+||+||+|||||++|+++|+.+++.+. ++-
T Consensus 8 ~KyRP~~f~dviGQe~vv~~L~~~l~~~rl--------~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg 79 (618)
T PRK14951 8 RKYRPRSFSEMVGQEHVVQALTNALTQQRL--------HHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCG 79 (618)
T ss_pred HHHCCCCHHHhcCcHHHHHHHHHHHHcCCC--------CeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCC
Confidence 467777889999999999999998875421 234799999999999999999999975321 111
Q ss_pred -EecccccccccchhcccC-CCCCCcccccccchhHHHHc----CCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCC
Q 003094 594 -RLDMSEFMERHTVSKLIG-SPPGYVGYTEGGQLTEAVRR----RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKG 667 (848)
Q Consensus 594 -~i~~~~~~~~~~~~~l~g-~~~g~~g~~~~~~l~~~~~~----~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g 667 (848)
+-+|..+....... ++- ......|.++.+.+.+.+.. +.+.|++|||+|.++.+.+|.|++.||+.
T Consensus 80 ~C~~C~~i~~g~h~D-~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEP------- 151 (618)
T PRK14951 80 VCQACRDIDSGRFVD-YTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEP------- 151 (618)
T ss_pred ccHHHHHHHcCCCCc-eeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccC-------
Confidence 11233232111111 111 11111222222333333332 34679999999999999999999999982
Q ss_pred ceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHH
Q 003094 668 RTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKE 747 (848)
Q Consensus 668 ~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~ 747 (848)
..+++||++|+.... +.+.+++|| ..+.|.+++.+++.+
T Consensus 152 ----P~~~~fIL~Ttd~~k------------------------------------il~TIlSRc-~~~~f~~Ls~eei~~ 190 (618)
T PRK14951 152 ----PEYLKFVLATTDPQK------------------------------------VPVTVLSRC-LQFNLRPMAPETVLE 190 (618)
T ss_pred ----CCCeEEEEEECCchh------------------------------------hhHHHHHhc-eeeecCCCCHHHHHH
Confidence 357788888863222 346799999 999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCeEeecHHHHHHHHHc
Q 003094 748 IADIMLKEVFDRLKTKDIELQVTERFRERVVEE 780 (848)
Q Consensus 748 I~~~~l~~~~~~~~~~~~~l~i~~~a~~~l~~~ 780 (848)
.+...+.+ ..+.++++++.+|+..
T Consensus 191 ~L~~i~~~---------egi~ie~~AL~~La~~ 214 (618)
T PRK14951 191 HLTQVLAA---------ENVPAEPQALRLLARA 214 (618)
T ss_pred HHHHHHHH---------cCCCCCHHHHHHHHHH
Confidence 88776654 2345889999999884
No 145
>PRK04132 replication factor C small subunit; Provisional
Probab=99.66 E-value=1.1e-13 Score=163.99 Aligned_cols=157 Identities=20% Similarity=0.276 Sum_probs=118.3
Q ss_pred eEEEeec--CCcchHHHHHHHHHHHhcCC--CCceEEecccccccccchhcccCCCCCCcccccccchhHHHHc-----C
Q 003094 562 ASFIFSG--PTGVGKSELAKALAAYYFGS--EEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRR-----R 632 (848)
Q Consensus 562 ~~lLl~G--p~GtGKT~lA~~la~~l~~~--~~~~i~i~~~~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~-----~ 632 (848)
-+-+..| |++.|||++|++||+.+|+. +.+++.+|.++..+-+.+..++. ++... .
T Consensus 565 ~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR~iIk---------------~~a~~~~~~~~ 629 (846)
T PRK04132 565 YHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGINVIREKVK---------------EFARTKPIGGA 629 (846)
T ss_pred hhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHHHHHH---------------HHHhcCCcCCC
Confidence 3457789 99999999999999999875 46789999987543333332221 11111 2
Q ss_pred CCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHH
Q 003094 633 PYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIK 712 (848)
Q Consensus 633 ~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~ 712 (848)
++.|+||||+|.++.+.|+.|++.||+. ..++.||++||....
T Consensus 630 ~~KVvIIDEaD~Lt~~AQnALLk~lEep-----------~~~~~FILi~N~~~k-------------------------- 672 (846)
T PRK04132 630 SFKIIFLDEADALTQDAQQALRRTMEMF-----------SSNVRFILSCNYSSK-------------------------- 672 (846)
T ss_pred CCEEEEEECcccCCHHHHHHHHHHhhCC-----------CCCeEEEEEeCChhh--------------------------
Confidence 3579999999999999999999999972 257899999985443
Q ss_pred HHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHH
Q 003094 713 SLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLR 792 (848)
Q Consensus 713 ~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~~~l~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~ 792 (848)
+.+++++|| ..+.|+|++.+++...+...+.+ ..+.++++++..|+.. ..++++
T Consensus 673 ----------Ii~tIrSRC-~~i~F~~ls~~~i~~~L~~I~~~---------Egi~i~~e~L~~Ia~~------s~GDlR 726 (846)
T PRK04132 673 ----------IIEPIQSRC-AIFRFRPLRDEDIAKRLRYIAEN---------EGLELTEEGLQAILYI------AEGDMR 726 (846)
T ss_pred ----------CchHHhhhc-eEEeCCCCCHHHHHHHHHHHHHh---------cCCCCCHHHHHHHHHH------cCCCHH
Confidence 447899999 99999999999999888776653 1245789999999883 345566
Q ss_pred HHHH
Q 003094 793 RAIM 796 (848)
Q Consensus 793 ~~i~ 796 (848)
+++.
T Consensus 727 ~AIn 730 (846)
T PRK04132 727 RAIN 730 (846)
T ss_pred HHHH
Confidence 6665
No 146
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=1.4e-15 Score=168.58 Aligned_cols=208 Identities=17% Similarity=0.204 Sum_probs=134.7
Q ss_pred HHHHHHHhhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCC----CceE-Eec
Q 003094 522 LLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSE----EAMI-RLD 596 (848)
Q Consensus 522 l~~l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~----~~~i-~i~ 596 (848)
..++++..+++|+||+++++.+.+++... +..+.+||+||+|+|||++|+++|+.+.+.. .++. +..
T Consensus 7 ~~kyrP~~~~~iiGq~~~~~~l~~~~~~~--------~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~ 78 (363)
T PRK14961 7 ARKWRPQYFRDIIGQKHIVTAISNGLSLG--------RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCII 78 (363)
T ss_pred HHHhCCCchhhccChHHHHHHHHHHHHcC--------CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 34677778899999999999998888642 1223479999999999999999999986422 1111 112
Q ss_pred ccccccccchhcccCCCCCCcccccccchhHHHHc----CCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeec
Q 003094 597 MSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRR----RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDF 672 (848)
Q Consensus 597 ~~~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~----~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~ 672 (848)
|.++.......-+.-.+....+......+.+.+.. +.+.|+||||+|+++...+|.|++.+|+. .
T Consensus 79 c~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~-----------~ 147 (363)
T PRK14961 79 CKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEP-----------P 147 (363)
T ss_pred HHHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcC-----------C
Confidence 22221111111000000001111111223333332 23569999999999999999999999972 2
Q ss_pred CCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHHHH
Q 003094 673 KNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIM 752 (848)
Q Consensus 673 ~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~~~ 752 (848)
.+++||++|+... .+.+.+.+|| ..+.|.|++.+++.+++...
T Consensus 148 ~~~~fIl~t~~~~------------------------------------~l~~tI~SRc-~~~~~~~l~~~el~~~L~~~ 190 (363)
T PRK14961 148 QHIKFILATTDVE------------------------------------KIPKTILSRC-LQFKLKIISEEKIFNFLKYI 190 (363)
T ss_pred CCeEEEEEcCChH------------------------------------hhhHHHHhhc-eEEeCCCCCHHHHHHHHHHH
Confidence 5677888875211 1457899999 89999999999999988776
Q ss_pred HHHHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHHH
Q 003094 753 LKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMR 797 (848)
Q Consensus 753 l~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~ 797 (848)
++.. + +.+++++++.|+..+ .++.|...+.+++
T Consensus 191 ~~~~-------g--~~i~~~al~~ia~~s---~G~~R~al~~l~~ 223 (363)
T PRK14961 191 LIKE-------S--IDTDEYALKLIAYHA---HGSMRDALNLLEH 223 (363)
T ss_pred HHHc-------C--CCCCHHHHHHHHHHc---CCCHHHHHHHHHH
Confidence 6541 2 458999999998842 1334544444443
No 147
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.65 E-value=3.3e-15 Score=169.62 Aligned_cols=202 Identities=24% Similarity=0.265 Sum_probs=154.0
Q ss_pred hhhhhhhcCCCCCccCChHHHHHHHHHhccCCCCCc-EEECCCCCcHHHHHHHHHHHhhCCCCCC--------------C
Q 003094 186 NLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNP-CLIGEPGVGKTAIAEGLAQRIASGDVPD--------------T 250 (848)
Q Consensus 186 ~l~~~~~~~~ld~iiG~~~~~~~l~~~l~~~~~~~i-LL~GppGtGKT~la~~la~~l~~~~~~~--------------~ 250 (848)
.|.+++||.+|++++|++..++.|...+..+...|. ||+||+|+|||++|+.+++.+.+...+. .
T Consensus 3 ~l~~KyRP~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~ 82 (535)
T PRK08451 3 ALALKYRPKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALE 82 (535)
T ss_pred cHHHHHCCCCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhh
Confidence 478899999999999999999999999988877776 8999999999999999999987543221 0
Q ss_pred CCCceEEEEeCCcccccccccchHHHHHHHHHHHHHh----CCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcC--C
Q 003094 251 IEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQ----SDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR--G 324 (848)
Q Consensus 251 l~~~~v~~~~~~~l~~~~~~~g~~~~~l~~l~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~--~ 324 (848)
..+..++.++...- .| ...++.+.+.... +...|++|||+|.|. .+.++.|+..++. .
T Consensus 83 ~~h~dv~eldaas~------~g--Id~IRelie~~~~~P~~~~~KVvIIDEad~Lt--------~~A~NALLK~LEEpp~ 146 (535)
T PRK08451 83 NRHIDIIEMDAASN------RG--IDDIRELIEQTKYKPSMARFKIFIIDEVHMLT--------KEAFNALLKTLEEPPS 146 (535)
T ss_pred cCCCeEEEeccccc------cC--HHHHHHHHHHHhhCcccCCeEEEEEECcccCC--------HHHHHHHHHHHhhcCC
Confidence 12234555543211 11 1334444444321 345699999999994 4578899999984 5
Q ss_pred ceEEEEeeChHHHHhhhhcChhhhcccCCCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCC
Q 003094 325 ELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFL 404 (848)
Q Consensus 325 ~v~vI~atn~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~ 404 (848)
.+.+|.+|+.+. .+.+++.+|+..++|.+++.++....+...+.+ .++.++++++..++..+.|-
T Consensus 147 ~t~FIL~ttd~~-----kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~----EGi~i~~~Al~~Ia~~s~Gd------ 211 (535)
T PRK08451 147 YVKFILATTDPL-----KLPATILSRTQHFRFKQIPQNSIISHLKTILEK----EGVSYEPEALEILARSGNGS------ 211 (535)
T ss_pred ceEEEEEECChh-----hCchHHHhhceeEEcCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCc------
Confidence 677888887664 688999999999999999999999888877764 57889999999999988764
Q ss_pred hhhHHHHHHHHhhH
Q 003094 405 PDKAIDLIDEAGSR 418 (848)
Q Consensus 405 p~~a~~ll~~a~~~ 418 (848)
+++++.+++.++..
T Consensus 212 lR~alnlLdqai~~ 225 (535)
T PRK08451 212 LRDTLTLLDQAIIY 225 (535)
T ss_pred HHHHHHHHHHHHHh
Confidence 45688888887654
No 148
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=1.1e-15 Score=174.53 Aligned_cols=207 Identities=19% Similarity=0.280 Sum_probs=137.9
Q ss_pred HHHHHHHhhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCC----CceEEe-c
Q 003094 522 LLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSE----EAMIRL-D 596 (848)
Q Consensus 522 l~~l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~----~~~i~i-~ 596 (848)
..++++.-+++++||+.+++.+.+.+...+ ..+.+||+||+|||||++|+.+|+.+++.. .++..+ .
T Consensus 7 a~KyRP~~f~diiGq~~~v~~L~~~i~~~r--------l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~s 78 (546)
T PRK14957 7 ARKYRPQSFAEVAGQQHALNSLVHALETQK--------VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCEN 78 (546)
T ss_pred HHHHCcCcHHHhcCcHHHHHHHHHHHHcCC--------CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHH
Confidence 356777788999999999999988886432 223489999999999999999999986521 222111 1
Q ss_pred ccccccccchhcccC-CCCCCcccccccchhHHHHc----CCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceee
Q 003094 597 MSEFMERHTVSKLIG-SPPGYVGYTEGGQLTEAVRR----RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVD 671 (848)
Q Consensus 597 ~~~~~~~~~~~~l~g-~~~g~~g~~~~~~l~~~~~~----~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~ 671 (848)
|..+.... ...++. ......|..+.+.+.+.+.. +.+.|+||||+|+++...+|.|++.||+.
T Consensus 79 C~~i~~~~-~~dlieidaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEep----------- 146 (546)
T PRK14957 79 CVAINNNS-FIDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEP----------- 146 (546)
T ss_pred HHHHhcCC-CCceEEeecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcC-----------
Confidence 11111110 011111 00112333333334443332 45779999999999999999999999983
Q ss_pred cCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHHH
Q 003094 672 FKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADI 751 (848)
Q Consensus 672 ~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~~ 751 (848)
+.+++||++|+... .+.+.+++|| .++.|.+++.+++...+..
T Consensus 147 p~~v~fIL~Ttd~~------------------------------------kil~tI~SRc-~~~~f~~Ls~~eI~~~L~~ 189 (546)
T PRK14957 147 PEYVKFILATTDYH------------------------------------KIPVTILSRC-IQLHLKHISQADIKDQLKI 189 (546)
T ss_pred CCCceEEEEECChh------------------------------------hhhhhHHHhe-eeEEeCCCCHHHHHHHHHH
Confidence 25677888775211 1346799999 9999999999999988877
Q ss_pred HHHHHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHHH
Q 003094 752 MLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMR 797 (848)
Q Consensus 752 ~l~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~ 797 (848)
.+.+ ..+.+++++++.|+..+- ++.|.+-+.+++
T Consensus 190 il~~---------egi~~e~~Al~~Ia~~s~---GdlR~alnlLek 223 (546)
T PRK14957 190 ILAK---------ENINSDEQSLEYIAYHAK---GSLRDALSLLDQ 223 (546)
T ss_pred HHHH---------cCCCCCHHHHHHHHHHcC---CCHHHHHHHHHH
Confidence 7755 124689999999998421 334555445443
No 149
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=99.65 E-value=2.6e-13 Score=159.75 Aligned_cols=146 Identities=28% Similarity=0.430 Sum_probs=112.6
Q ss_pred EEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhcccCCCCCCcccccc------cchhHHHHcCCCeE
Q 003094 563 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEG------GQLTEAVRRRPYTV 636 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~~g~~~~------~~l~~~~~~~~~~V 636 (848)
++|+.||+.+|||++...+|+.. +-.|+++|-.+.. .....+|. |+..+.+ +.+.+++|+.- +
T Consensus 890 P~LiQGpTSSGKTSMI~yla~~t---ghkfVRINNHEHT---dlqeYiGT---yvTdd~G~lsFkEGvLVeAlR~Gy--W 958 (4600)
T COG5271 890 PLLIQGPTSSGKTSMILYLARET---GHKFVRINNHEHT---DLQEYIGT---YVTDDDGSLSFKEGVLVEALRRGY--W 958 (4600)
T ss_pred cEEEecCCCCCcchHHHHHHHHh---CccEEEecCcccc---hHHHHhhc---eeecCCCceeeehhHHHHHHhcCc--E
Confidence 38999999999999999999997 7889999987653 34556665 5554443 67888888754 9
Q ss_pred EEEcCCCcCChHHHHHHHhhhcCcE-EEcCC--CceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHH
Q 003094 637 VLFDEIEKAHPDVFNMMLQILEDGR-LTDSK--GRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKS 713 (848)
Q Consensus 637 l~lDEid~l~~~~~~~Ll~~le~g~-~~~~~--g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~ 713 (848)
|++||.+-++.+|+++|.+++++.+ +..++ ...+++++.++++|-|.+.. |.
T Consensus 959 IVLDELNLApTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~----------Yg--------------- 1013 (4600)
T COG5271 959 IVLDELNLAPTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGG----------YG--------------- 1013 (4600)
T ss_pred EEeeccccCcHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCcc----------cc---------------
Confidence 9999999999999999999998743 43333 33456678899888884332 10
Q ss_pred HHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHH
Q 003094 714 LVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIAD 750 (848)
Q Consensus 714 ~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~ 750 (848)
.++.+..+|++|| --+.|....++++..|+.
T Consensus 1014 -----GRK~LSrAFRNRF-lE~hFddipedEle~ILh 1044 (4600)
T COG5271 1014 -----GRKGLSRAFRNRF-LEMHFDDIPEDELEEILH 1044 (4600)
T ss_pred -----chHHHHHHHHhhh-HhhhcccCcHHHHHHHHh
Confidence 1234667899999 778999999999999983
No 150
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=1.3e-15 Score=172.56 Aligned_cols=191 Identities=20% Similarity=0.312 Sum_probs=128.5
Q ss_pred HHHHHHhhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCC----ceEEe-cc
Q 003094 523 LKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEE----AMIRL-DM 597 (848)
Q Consensus 523 ~~l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~----~~i~i-~~ 597 (848)
.++++..+++++||++++..+.+.+... +..+++||+||||||||++|+++|+.+.+... |+..+ .|
T Consensus 6 ~kyRP~~~~divGq~~i~~~L~~~i~~~--------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c 77 (472)
T PRK14962 6 RKYRPKTFSEVVGQDHVKKLIINALKKN--------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRAC 77 (472)
T ss_pred HHHCCCCHHHccCcHHHHHHHHHHHHcC--------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHH
Confidence 4677778899999999988888777633 22245899999999999999999999864321 11111 11
Q ss_pred ccccccc--chhcccCCCCCCcccccccchhHHHHc----CCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceee
Q 003094 598 SEFMERH--TVSKLIGSPPGYVGYTEGGQLTEAVRR----RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVD 671 (848)
Q Consensus 598 ~~~~~~~--~~~~l~g~~~g~~g~~~~~~l~~~~~~----~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~ 671 (848)
..+.... .+..+-+ ....|.++.+.+.+.+.. +.+.||||||+|.++...++.|+..|++.
T Consensus 78 ~~i~~g~~~dv~el~a--a~~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p----------- 144 (472)
T PRK14962 78 RSIDEGTFMDVIELDA--ASNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEP----------- 144 (472)
T ss_pred HHHhcCCCCccEEEeC--cccCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhC-----------
Confidence 1111000 0111111 011222222333333332 34579999999999999999999999872
Q ss_pred cCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHHH
Q 003094 672 FKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADI 751 (848)
Q Consensus 672 ~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~~ 751 (848)
..+++||++|+... .+.+.+.+|| .++.|.+++.+++..++..
T Consensus 145 ~~~vv~Ilattn~~------------------------------------kl~~~L~SR~-~vv~f~~l~~~el~~~L~~ 187 (472)
T PRK14962 145 PSHVVFVLATTNLE------------------------------------KVPPTIISRC-QVIEFRNISDELIIKRLQE 187 (472)
T ss_pred CCcEEEEEEeCChH------------------------------------hhhHHHhcCc-EEEEECCccHHHHHHHHHH
Confidence 24677887775211 2468899999 8999999999999888877
Q ss_pred HHHHHHHHHhcCCCeEeecHHHHHHHHHc
Q 003094 752 MLKEVFDRLKTKDIELQVTERFRERVVEE 780 (848)
Q Consensus 752 ~l~~~~~~~~~~~~~l~i~~~a~~~l~~~ 780 (848)
.+.. ..+.++++++++|+..
T Consensus 188 i~~~---------egi~i~~eal~~Ia~~ 207 (472)
T PRK14962 188 VAEA---------EGIEIDREALSFIAKR 207 (472)
T ss_pred HHHH---------cCCCCCHHHHHHHHHH
Confidence 6653 2346899999999984
No 151
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=2.8e-15 Score=172.78 Aligned_cols=202 Identities=19% Similarity=0.218 Sum_probs=153.9
Q ss_pred hhhhhhhcCCCCCccCChHHHHHHHHHhccCCCCCc-EEECCCCCcHHHHHHHHHHHhhCCCCCC--------------C
Q 003094 186 NLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNP-CLIGEPGVGKTAIAEGLAQRIASGDVPD--------------T 250 (848)
Q Consensus 186 ~l~~~~~~~~ld~iiG~~~~~~~l~~~l~~~~~~~i-LL~GppGtGKT~la~~la~~l~~~~~~~--------------~ 250 (848)
.|..++||.+|++++|++..++.+...+......|. ||+||+|+|||++|+.+|+.+.+..... .
T Consensus 5 ~l~~k~rP~~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~ 84 (527)
T PRK14969 5 VLARKWRPKSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDS 84 (527)
T ss_pred HHHHHhCCCcHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhc
Confidence 378899999999999999999999999988777775 8999999999999999999997632211 0
Q ss_pred CCCceEEEEeCCcccccccccchHHHHHHHHHHHHHh----CCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcC--C
Q 003094 251 IEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQ----SDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR--G 324 (848)
Q Consensus 251 l~~~~v~~~~~~~l~~~~~~~g~~~~~l~~l~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~--~ 324 (848)
.....+++++.+.- . ....++.+++.+.. +...|+||||+|.|. ....+.|++.++. +
T Consensus 85 ~~~~d~~ei~~~~~------~--~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls--------~~a~naLLK~LEepp~ 148 (527)
T PRK14969 85 GRFVDLIEVDAASN------T--QVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLS--------KSAFNAMLKTLEEPPE 148 (527)
T ss_pred CCCCceeEeecccc------C--CHHHHHHHHHHHhhCcccCCceEEEEcCcccCC--------HHHHHHHHHHHhCCCC
Confidence 01124555543221 1 12345556655532 345699999999984 3467888888885 5
Q ss_pred ceEEEEeeChHHHHhhhhcChhhhcccCCCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCC
Q 003094 325 ELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFL 404 (848)
Q Consensus 325 ~v~vI~atn~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~ 404 (848)
.+.+|++|+.+. .+.+.+.+||..+.|+.++.++..+.+...+.+ .++.++++++..++..+.|-
T Consensus 149 ~~~fIL~t~d~~-----kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~----egi~~~~~al~~la~~s~Gs------ 213 (527)
T PRK14969 149 HVKFILATTDPQ-----KIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQ----ENIPFDATALQLLARAAAGS------ 213 (527)
T ss_pred CEEEEEEeCChh-----hCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC------
Confidence 788888887765 466789999999999999999998888877763 46788999999999988765
Q ss_pred hhhHHHHHHHHhhH
Q 003094 405 PDKAIDLIDEAGSR 418 (848)
Q Consensus 405 p~~a~~ll~~a~~~ 418 (848)
+++++.+++.++..
T Consensus 214 lr~al~lldqai~~ 227 (527)
T PRK14969 214 MRDALSLLDQAIAY 227 (527)
T ss_pred HHHHHHHHHHHHHh
Confidence 45689999887653
No 152
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.64 E-value=1.6e-15 Score=172.12 Aligned_cols=206 Identities=17% Similarity=0.207 Sum_probs=138.6
Q ss_pred HHHHHHhhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCC--------ce-E
Q 003094 523 LKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEE--------AM-I 593 (848)
Q Consensus 523 ~~l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~--------~~-i 593 (848)
.++++..+.+++||+.++..+..++... +..+++||+||+|||||++|+++|+.+.+... ++ .
T Consensus 13 ~kyRP~~f~dliGq~~vv~~L~~ai~~~--------ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~ 84 (507)
T PRK06645 13 RKYRPSNFAELQGQEVLVKVLSYTILND--------RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQ 84 (507)
T ss_pred hhhCCCCHHHhcCcHHHHHHHHHHHHcC--------CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCC
Confidence 4567777889999999999888877643 22246999999999999999999999865321 11 1
Q ss_pred Eecccccccccc--hhcccCCCCCCcccccccchhHHHHc----CCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCC
Q 003094 594 RLDMSEFMERHT--VSKLIGSPPGYVGYTEGGQLTEAVRR----RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKG 667 (848)
Q Consensus 594 ~i~~~~~~~~~~--~~~l~g~~~g~~g~~~~~~l~~~~~~----~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g 667 (848)
+-+|..+.+... +..+ +. ....|.++.+.+.+.+.. +.+.|+||||+|.++...++.|++.||+.
T Consensus 85 C~~C~~i~~~~h~Dv~ei-da-as~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEep------- 155 (507)
T PRK06645 85 CTNCISFNNHNHPDIIEI-DA-ASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEP------- 155 (507)
T ss_pred ChHHHHHhcCCCCcEEEe-ec-cCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhc-------
Confidence 122333322111 1111 11 112222222334444433 34679999999999999999999999972
Q ss_pred ceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHH
Q 003094 668 RTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKE 747 (848)
Q Consensus 668 ~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~ 747 (848)
..+++||++|+... .+.+.+.+|| ..+.|.+++.+++..
T Consensus 156 ----p~~~vfI~aTte~~------------------------------------kI~~tI~SRc-~~~ef~~ls~~el~~ 194 (507)
T PRK06645 156 ----PPHIIFIFATTEVQ------------------------------------KIPATIISRC-QRYDLRRLSFEEIFK 194 (507)
T ss_pred ----CCCEEEEEEeCChH------------------------------------HhhHHHHhcc-eEEEccCCCHHHHHH
Confidence 35778888875211 2457899999 889999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHHHH
Q 003094 748 IADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRL 798 (848)
Q Consensus 748 I~~~~l~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~ 798 (848)
++...+++ ..+.+++++++.|+..+- ++.|.+-+.++++
T Consensus 195 ~L~~i~~~---------egi~ie~eAL~~Ia~~s~---GslR~al~~Ldka 233 (507)
T PRK06645 195 LLEYITKQ---------ENLKTDIEALRIIAYKSE---GSARDAVSILDQA 233 (507)
T ss_pred HHHHHHHH---------cCCCCCHHHHHHHHHHcC---CCHHHHHHHHHHH
Confidence 99888864 234589999999998421 3445554444443
No 153
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.64 E-value=2.3e-15 Score=174.02 Aligned_cols=213 Identities=21% Similarity=0.258 Sum_probs=149.5
Q ss_pred hhhhhhhhhcCCCCCccCChHHHHHHHHHhccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCc
Q 003094 184 GTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGL 263 (848)
Q Consensus 184 ~~~l~~~~~~~~ld~iiG~~~~~~~l~~~l~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~ 263 (848)
..+|.+++||.+|++++|+++.++.+...+..+.+.++||+||||||||++|+.+.+..........-.+.+++.+|+..
T Consensus 52 ~~~~~~~~rp~~f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~ 131 (531)
T TIGR02902 52 TEPLSEKTRPKSFDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATT 131 (531)
T ss_pred cchHHHhhCcCCHHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEcccc
Confidence 45799999999999999999999999988888888999999999999999999998765432111111246788888763
Q ss_pred cccccc-c----cchHHHHH-------------HHHHHHHHhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCC-
Q 003094 264 LVAGTK-Y----RGEFEERL-------------KKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARG- 324 (848)
Q Consensus 264 l~~~~~-~----~g~~~~~l-------------~~l~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~- 324 (848)
.....+ + .+.....+ ......+....+.+|||||+|.|. .+.++.|...++.+
T Consensus 132 ~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~--------~~~q~~LL~~Le~~~ 203 (531)
T TIGR02902 132 ARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELH--------PVQMNKLLKVLEDRK 203 (531)
T ss_pred ccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCC--------HHHHHHHHHHHHhCe
Confidence 210000 0 00000000 000112234456799999999994 44677777666532
Q ss_pred -----------------------------ceEEEEeeChHHHHhhhhcChhhhcccCCCcCCCCCHHHHHHHHHHHHHHH
Q 003094 325 -----------------------------ELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERY 375 (848)
Q Consensus 325 -----------------------------~v~vI~atn~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~Il~~~~~~~ 375 (848)
.+.+|++|+.... .++|++++||..+.|++++.++..+|++..+++
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~----~L~paLrsR~~~I~f~pL~~eei~~Il~~~a~k- 278 (531)
T TIGR02902 204 VFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPE----EIPPALRSRCVEIFFRPLLDEEIKEIAKNAAEK- 278 (531)
T ss_pred eeeccccccccCcccccchhhhcccCcccceEEEEEecCCcc----cCChHHhhhhheeeCCCCCHHHHHHHHHHHHHH-
Confidence 2467777665442 689999999999999999999999999988875
Q ss_pred hhhhcCCCChHHHHHHHhhhhcccccCCChhhHHHHHHHHhhHH
Q 003094 376 EIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRV 419 (848)
Q Consensus 376 ~~~~~~~~s~~~l~~l~~~s~~~~~~~~~p~~a~~ll~~a~~~~ 419 (848)
.++.+++++++.+..++. ..+.+..+++.|+..+
T Consensus 279 ---~~i~is~~al~~I~~y~~-------n~Rel~nll~~Aa~~A 312 (531)
T TIGR02902 279 ---IGINLEKHALELIVKYAS-------NGREAVNIVQLAAGIA 312 (531)
T ss_pred ---cCCCcCHHHHHHHHHhhh-------hHHHHHHHHHHHHHHH
Confidence 457889999987776542 1356777777776544
No 154
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.64 E-value=3.9e-15 Score=172.79 Aligned_cols=202 Identities=23% Similarity=0.261 Sum_probs=154.9
Q ss_pred hhhhhhhcCCCCCccCChHHHHHHHHHhccCCCCC-cEEECCCCCcHHHHHHHHHHHhhCCCCCCC--------------
Q 003094 186 NLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNN-PCLIGEPGVGKTAIAEGLAQRIASGDVPDT-------------- 250 (848)
Q Consensus 186 ~l~~~~~~~~ld~iiG~~~~~~~l~~~l~~~~~~~-iLL~GppGtGKT~la~~la~~l~~~~~~~~-------------- 250 (848)
.|..++||.+|++++|++..++.|...+......| +||+||+|||||++|+.+|+.+.+...+..
T Consensus 5 al~~k~rP~~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~ 84 (559)
T PRK05563 5 ALYRKWRPQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITN 84 (559)
T ss_pred HHHHHhCCCcHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhc
Confidence 46788999999999999999999999998877777 578999999999999999999976432211
Q ss_pred CCCceEEEEeCCcccccccccchHHHHHHHHHHHHH----hCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcC--C
Q 003094 251 IEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIK----QSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR--G 324 (848)
Q Consensus 251 l~~~~v~~~~~~~l~~~~~~~g~~~~~l~~l~~~~~----~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~--~ 324 (848)
.....+++++.+.- .....++.+.+.+. .+...|+||||+|.|. ....+.|+..++. .
T Consensus 85 g~~~dv~eidaas~--------~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt--------~~a~naLLKtLEepp~ 148 (559)
T PRK05563 85 GSLMDVIEIDAASN--------NGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLS--------TGAFNALLKTLEEPPA 148 (559)
T ss_pred CCCCCeEEeecccc--------CCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC--------HHHHHHHHHHhcCCCC
Confidence 12345666654321 11234556666654 2446799999999994 3468888888874 5
Q ss_pred ceEEEEeeChHHHHhhhhcChhhhcccCCCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCC
Q 003094 325 ELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFL 404 (848)
Q Consensus 325 ~v~vI~atn~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~ 404 (848)
.+++|.+|+.+. .+.+.+.+||+.+.|+.|+.++....++.+++ ..++.++++++..++..+.+-
T Consensus 149 ~~ifIlatt~~~-----ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~----~egi~i~~~al~~ia~~s~G~------ 213 (559)
T PRK05563 149 HVIFILATTEPH-----KIPATILSRCQRFDFKRISVEDIVERLKYILD----KEGIEYEDEALRLIARAAEGG------ 213 (559)
T ss_pred CeEEEEEeCChh-----hCcHHHHhHheEEecCCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHcCCC------
Confidence 677777777665 58899999999999999999999998888776 357889999999999987654
Q ss_pred hhhHHHHHHHHhhH
Q 003094 405 PDKAIDLIDEAGSR 418 (848)
Q Consensus 405 p~~a~~ll~~a~~~ 418 (848)
++.++.+|+.+...
T Consensus 214 ~R~al~~Ldq~~~~ 227 (559)
T PRK05563 214 MRDALSILDQAISF 227 (559)
T ss_pred HHHHHHHHHHHHHh
Confidence 45688888877553
No 155
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=1.1e-14 Score=152.30 Aligned_cols=163 Identities=23% Similarity=0.330 Sum_probs=119.4
Q ss_pred CCCccCChHHHHHHHHHh--------ccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCccccc
Q 003094 196 LDPVVGRQPQIERVVQIL--------GRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAG 267 (848)
Q Consensus 196 ld~iiG~~~~~~~l~~~l--------~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~ 267 (848)
|+++|-+....++|..+- ...+.+||+||||||||||++|+.||+.- |..+-.+..+++.
T Consensus 354 l~~ViL~psLe~Rie~lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~S----------GlDYA~mTGGDVA-- 421 (630)
T KOG0742|consen 354 LEGVILHPSLEKRIEDLAIATANTKKHQAPFRNILFYGPPGTGKTMFARELARHS----------GLDYAIMTGGDVA-- 421 (630)
T ss_pred cCCeecCHHHHHHHHHHHHHhcccccccchhhheeeeCCCCCCchHHHHHHHhhc----------CCceehhcCCCcc--
Confidence 777777666555555442 12456899999999999999999999875 3333323222221
Q ss_pred ccccchHHHHHHHHHHHHHhC-CCeEEEEcccchhhhCCCCCchHHHH-HHHhhhh----c-CCceEEEEeeChHHHHhh
Q 003094 268 TKYRGEFEERLKKLMEEIKQS-DEIILFIDEVHTLIGAGAAEGAIDAA-NILKPSL----A-RGELQCIGATTLDEYRKH 340 (848)
Q Consensus 268 ~~~~g~~~~~l~~l~~~~~~~-~~~IL~IDEid~l~~~~~~~~~~~~~-~~L~~~l----~-~~~v~vI~atn~~~~~~~ 340 (848)
....+.-..++++|++++++ .+.+|||||+|.++..++.....+.+ ..|..+| + ...++++.+||.+.
T Consensus 422 -PlG~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvlAtNrpg---- 496 (630)
T KOG0742|consen 422 -PLGAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVLATNRPG---- 496 (630)
T ss_pred -ccchHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcccccceEEEeccCCcc----
Confidence 11124456799999999875 57799999999999877765543322 2233333 2 45699999999998
Q ss_pred hhcChhhhcccC-CCcCCCCCHHHHHHHHHHHHHHHh
Q 003094 341 IEKDPALERRFQ-PVKVPEPSVDETIQILKGLRERYE 376 (848)
Q Consensus 341 ~~~d~al~~Rf~-~i~~~~p~~~e~~~Il~~~~~~~~ 376 (848)
.+|.++..|++ .|+||.|..++|..+|..++++|.
T Consensus 497 -dlDsAV~DRide~veFpLPGeEERfkll~lYlnkyi 532 (630)
T KOG0742|consen 497 -DLDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKYI 532 (630)
T ss_pred -chhHHHHhhhhheeecCCCChHHHHHHHHHHHHHHh
Confidence 79999999997 899999999999999999998875
No 156
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.64 E-value=1e-15 Score=175.84 Aligned_cols=208 Identities=19% Similarity=0.225 Sum_probs=137.4
Q ss_pred HHHHHHHhhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCC----ceEEe-c
Q 003094 522 LLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEE----AMIRL-D 596 (848)
Q Consensus 522 l~~l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~----~~i~i-~ 596 (848)
..++++.-+++|+||+.+++.|.+.+... +....+||+||+|||||++|+++|+.+++... ++..+ .
T Consensus 7 arKYRP~tFddIIGQe~vv~~L~~ai~~~--------rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~s 78 (709)
T PRK08691 7 ARKWRPKTFADLVGQEHVVKALQNALDEG--------RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQS 78 (709)
T ss_pred HHHhCCCCHHHHcCcHHHHHHHHHHHHcC--------CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHH
Confidence 34677778899999999999999888743 22245899999999999999999999865421 11111 1
Q ss_pred ccccccccchhcccCCCCCCcccccccchhHHHH----cCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeec
Q 003094 597 MSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVR----RRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDF 672 (848)
Q Consensus 597 ~~~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~----~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~ 672 (848)
|..+........+.-......|....+.+.+.+. .+.+.||||||+|+++...+|.|++.||+- .
T Consensus 79 Cr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEP-----------p 147 (709)
T PRK08691 79 CTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEP-----------P 147 (709)
T ss_pred HHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhC-----------C
Confidence 1111111000000000011112211222333222 244689999999999999999999999972 2
Q ss_pred CCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHHHH
Q 003094 673 KNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIM 752 (848)
Q Consensus 673 ~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~~~ 752 (848)
.+++||++||.... +.+.+++|| ..+.|.+++.+++...+...
T Consensus 148 ~~v~fILaTtd~~k------------------------------------L~~TIrSRC-~~f~f~~Ls~eeI~~~L~~I 190 (709)
T PRK08691 148 EHVKFILATTDPHK------------------------------------VPVTVLSRC-LQFVLRNMTAQQVADHLAHV 190 (709)
T ss_pred CCcEEEEEeCCccc------------------------------------cchHHHHHH-hhhhcCCCCHHHHHHHHHHH
Confidence 56788888863222 346788999 88999999999999998877
Q ss_pred HHHHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHHH
Q 003094 753 LKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMR 797 (848)
Q Consensus 753 l~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~ 797 (848)
+.. ..+.++++++..|++.+- ++.|.+.+.+.+
T Consensus 191 l~k---------Egi~id~eAL~~Ia~~A~---GslRdAlnLLDq 223 (709)
T PRK08691 191 LDS---------EKIAYEPPALQLLGRAAA---GSMRDALSLLDQ 223 (709)
T ss_pred HHH---------cCCCcCHHHHHHHHHHhC---CCHHHHHHHHHH
Confidence 754 235689999999998422 344555444443
No 157
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.64 E-value=8.7e-15 Score=160.56 Aligned_cols=200 Identities=19% Similarity=0.255 Sum_probs=138.0
Q ss_pred HHHHHhhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccc
Q 003094 524 KMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMER 603 (848)
Q Consensus 524 ~l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~ 603 (848)
++++.-+++++||++.++.+...+...+.. +.+..+++|+||||||||++|+++|+.+ +..+...+...+..
T Consensus 18 ~~rP~~~~~~vG~~~~~~~l~~~l~~~~~~----~~~~~~~ll~GppG~GKT~la~~ia~~l---~~~~~~~~~~~~~~- 89 (328)
T PRK00080 18 SLRPKSLDEFIGQEKVKENLKIFIEAAKKR----GEALDHVLLYGPPGLGKTTLANIIANEM---GVNIRITSGPALEK- 89 (328)
T ss_pred hcCcCCHHHhcCcHHHHHHHHHHHHHHHhc----CCCCCcEEEECCCCccHHHHHHHHHHHh---CCCeEEEecccccC-
Confidence 455666788999999999998888765322 3344579999999999999999999997 33444333322211
Q ss_pred cchhcccCCCCCCcccccccchhHHHHc-CCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEc--CCC-----ceeecCCe
Q 003094 604 HTVSKLIGSPPGYVGYTEGGQLTEAVRR-RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTD--SKG-----RTVDFKNT 675 (848)
Q Consensus 604 ~~~~~l~g~~~g~~g~~~~~~l~~~~~~-~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~--~~g-----~~v~~~~~ 675 (848)
.+.+...+.. ..++||||||||.+++..++.|+..|++..+.. ..+ .....+.+
T Consensus 90 ------------------~~~l~~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~ 151 (328)
T PRK00080 90 ------------------PGDLAAILTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPF 151 (328)
T ss_pred ------------------hHHHHHHHHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCc
Confidence 0122222222 356799999999999999999999999765321 111 11123456
Q ss_pred EEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHHHHHHH
Q 003094 676 LLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKE 755 (848)
Q Consensus 676 iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~~~l~~ 755 (848)
.+|++||... .+.++|.+||...+.|++++.+++.+|+......
T Consensus 152 ~li~at~~~~------------------------------------~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~ 195 (328)
T PRK00080 152 TLIGATTRAG------------------------------------LLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARI 195 (328)
T ss_pred eEEeecCCcc------------------------------------cCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHH
Confidence 7777776322 2567899999888999999999999999876654
Q ss_pred HHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHHH
Q 003094 756 VFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMR 797 (848)
Q Consensus 756 ~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~ 797 (848)
..+.++++++++|+..+- +..|.+.+.+.+
T Consensus 196 ---------~~~~~~~~~~~~ia~~~~---G~pR~a~~~l~~ 225 (328)
T PRK00080 196 ---------LGVEIDEEGALEIARRSR---GTPRIANRLLRR 225 (328)
T ss_pred ---------cCCCcCHHHHHHHHHHcC---CCchHHHHHHHH
Confidence 235689999999998532 223545555543
No 158
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.63 E-value=2.9e-15 Score=170.07 Aligned_cols=190 Identities=18% Similarity=0.297 Sum_probs=130.7
Q ss_pred HHHHHHhhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCC----ceE-Eecc
Q 003094 523 LKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEE----AMI-RLDM 597 (848)
Q Consensus 523 ~~l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~----~~i-~i~~ 597 (848)
.++++.-+++++||+.+++.+...+...+ ..+.+||+||+|+|||++|+++|+.+++... ++. +-+|
T Consensus 6 ~KyRP~~fdeiiGqe~v~~~L~~~I~~gr--------l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C 77 (535)
T PRK08451 6 LKYRPKHFDELIGQESVSKTLSLALDNNR--------LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQC 77 (535)
T ss_pred HHHCCCCHHHccCcHHHHHHHHHHHHcCC--------CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 46677778899999999999998886432 2234799999999999999999999865321 111 1122
Q ss_pred cccccccchhcccCCCCCCcccccccchhHHHHc-------CCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCcee
Q 003094 598 SEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRR-------RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTV 670 (848)
Q Consensus 598 ~~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~-------~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v 670 (848)
..+........+-+......|. ..+.+.+.. +++.|++|||+|.++.+.+|.|++.||+
T Consensus 78 ~~~~~~~h~dv~eldaas~~gI---d~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEE----------- 143 (535)
T PRK08451 78 QSALENRHIDIIEMDAASNRGI---DDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEE----------- 143 (535)
T ss_pred HHHhhcCCCeEEEeccccccCH---HHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhh-----------
Confidence 2221111111111111111122 223333322 3467999999999999999999999998
Q ss_pred ecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHH
Q 003094 671 DFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIAD 750 (848)
Q Consensus 671 ~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~ 750 (848)
++.+++||++++... .+.+.+++|| ..+.|.+++.+++...+.
T Consensus 144 pp~~t~FIL~ttd~~------------------------------------kL~~tI~SRc-~~~~F~~Ls~~ei~~~L~ 186 (535)
T PRK08451 144 PPSYVKFILATTDPL------------------------------------KLPATILSRT-QHFRFKQIPQNSIISHLK 186 (535)
T ss_pred cCCceEEEEEECChh------------------------------------hCchHHHhhc-eeEEcCCCCHHHHHHHHH
Confidence 236788888886322 2458899999 899999999999998887
Q ss_pred HHHHHHHHHHhcCCCeEeecHHHHHHHHHc
Q 003094 751 IMLKEVFDRLKTKDIELQVTERFRERVVEE 780 (848)
Q Consensus 751 ~~l~~~~~~~~~~~~~l~i~~~a~~~l~~~ 780 (848)
..+.+ .| +.+++++++.|+..
T Consensus 187 ~Il~~-------EG--i~i~~~Al~~Ia~~ 207 (535)
T PRK08451 187 TILEK-------EG--VSYEPEALEILARS 207 (535)
T ss_pred HHHHH-------cC--CCCCHHHHHHHHHH
Confidence 77654 23 45899999999984
No 159
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=1.3e-15 Score=174.57 Aligned_cols=192 Identities=19% Similarity=0.300 Sum_probs=131.0
Q ss_pred HHHHHHHhhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCC----CceEEe-c
Q 003094 522 LLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSE----EAMIRL-D 596 (848)
Q Consensus 522 l~~l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~----~~~i~i-~ 596 (848)
..+++...+++|+||+.++..|.+++...+ -...+||+||+|||||++|+++|+.+++.. .++-.+ .
T Consensus 7 a~KyRP~sf~dIiGQe~v~~~L~~ai~~~r--------i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~s 78 (624)
T PRK14959 7 TARYRPQTFAEVAGQETVKAILSRAAQENR--------VAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQ 78 (624)
T ss_pred HHHhCCCCHHHhcCCHHHHHHHHHHHHcCC--------CCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHH
Confidence 346777788999999999999998887432 124699999999999999999999997532 122111 1
Q ss_pred ccccccccc--hhcccCCCCCCcccccccchhHHHH----cCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCcee
Q 003094 597 MSEFMERHT--VSKLIGSPPGYVGYTEGGQLTEAVR----RRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTV 670 (848)
Q Consensus 597 ~~~~~~~~~--~~~l~g~~~g~~g~~~~~~l~~~~~----~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v 670 (848)
|..+..... +..+-+. ...+.+..+.+.+.+. .+.+.||||||+|+++...++.|++.||+.
T Consensus 79 C~~i~~g~hpDv~eId~a--~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP---------- 146 (624)
T PRK14959 79 CRKVTQGMHVDVVEIDGA--SNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEP---------- 146 (624)
T ss_pred HHHHhcCCCCceEEEecc--cccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhcc----------
Confidence 111111111 1111111 1122222233333333 345689999999999999999999999972
Q ss_pred ecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHH
Q 003094 671 DFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIAD 750 (848)
Q Consensus 671 ~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~ 750 (848)
..+++||++||... .+.+.+++|| ..+.|.+++.+++..++.
T Consensus 147 -~~~~ifILaTt~~~------------------------------------kll~TI~SRc-q~i~F~pLs~~eL~~~L~ 188 (624)
T PRK14959 147 -PARVTFVLATTEPH------------------------------------KFPVTIVSRC-QHFTFTRLSEAGLEAHLT 188 (624)
T ss_pred -CCCEEEEEecCChh------------------------------------hhhHHHHhhh-hccccCCCCHHHHHHHHH
Confidence 25678888886322 2346788999 789999999999999887
Q ss_pred HHHHHHHHHHhcCCCeEeecHHHHHHHHHc
Q 003094 751 IMLKEVFDRLKTKDIELQVTERFRERVVEE 780 (848)
Q Consensus 751 ~~l~~~~~~~~~~~~~l~i~~~a~~~l~~~ 780 (848)
..+.. ..+.+++++++.|+..
T Consensus 189 ~il~~---------egi~id~eal~lIA~~ 209 (624)
T PRK14959 189 KVLGR---------EGVDYDPAAVRLIARR 209 (624)
T ss_pred HHHHH---------cCCCCCHHHHHHHHHH
Confidence 76643 2345899999999984
No 160
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=99.63 E-value=2.2e-15 Score=152.99 Aligned_cols=232 Identities=22% Similarity=0.366 Sum_probs=155.9
Q ss_pred HHHHHHHHhhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCC--CceEEeccc
Q 003094 521 RLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSE--EAMIRLDMS 598 (848)
Q Consensus 521 ~l~~l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~--~~~i~i~~~ 598 (848)
++..|+..|...++||.-+++.|.++++..... ..|++|+. +-|+|+|||||..+++.||+.+|..+ .++|..=.+
T Consensus 72 ~~~~Le~dL~~~lfGQHla~~~Vv~alk~~~~n-~~p~KPLv-LSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fva 149 (344)
T KOG2170|consen 72 DLDGLEKDLARALFGQHLAKQLVVNALKSHWAN-PNPRKPLV-LSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVA 149 (344)
T ss_pred cchHHHHHHHHHhhchHHHHHHHHHHHHHHhcC-CCCCCCeE-EEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhh
Confidence 466788899999999999999999999987654 55788886 78999999999999999999987543 333321111
Q ss_pred ccccccchhcccCCCCCCcc-cc--cccchhHHHHcCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecCCe
Q 003094 599 EFMERHTVSKLIGSPPGYVG-YT--EGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNT 675 (848)
Q Consensus 599 ~~~~~~~~~~l~g~~~g~~g-~~--~~~~l~~~~~~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~ 675 (848)
...-+ . +.++. |. -...+.+-++.++.++++|||+||+|+..++.|-..++.... ...+++.++
T Consensus 150 t~hFP--------~-~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~gLld~lkpfLdyyp~----v~gv~frka 216 (344)
T KOG2170|consen 150 TLHFP--------H-ASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPPGLLDVLKPFLDYYPQ----VSGVDFRKA 216 (344)
T ss_pred hccCC--------C-hHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcCHhHHHHHhhhhccccc----cccccccce
Confidence 11000 0 00111 11 114556667789999999999999999999999999986332 234688999
Q ss_pred EEEEecCCCchhhhccC---cccccccCCCcccccHHHHHHHHHHHH---H--hhcChhhh--hccCeEEEcCCCCHHHH
Q 003094 676 LLIMTSNVGSSVIEKGG---RRIGFDLDYDEKDSSYNRIKSLVTEEL---K--QYFRPEFL--NRLDEMIVFRQLTKLEV 745 (848)
Q Consensus 676 iiI~tsN~~~~~i~~~~---~~~~f~~~~~~~~~~~~~~~~~~~~~l---~--~~~~~~ll--~R~d~~i~f~~l~~~el 745 (848)
+||+-||.+.+.|.... -+.|. ..++.....++...+... + ......+. +++|.+|+|.|++...+
T Consensus 217 IFIfLSN~gg~eI~~~aL~~~~~g~----~re~~~l~~~E~~L~~~~~n~~~~Gl~~S~li~~~lid~fIPFLPLek~hV 292 (344)
T KOG2170|consen 217 IFIFLSNAGGSEIARIALENARNGK----PREQLRLKSFEPALMQSAFNEKAGGLVHSRLISNNLIDHFIPFLPLEKRHV 292 (344)
T ss_pred EEEEEcCCcchHHHHHHHHHHHcCC----CcccchhhhhhHHHHHhhhccccccccccccchhhHHhhccCcCcccHHHH
Confidence 99999999988776311 11111 112222222332222111 1 11112222 67899999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCeEeecHHHHHHHHHc
Q 003094 746 KEIADIMLKEVFDRLKTKDIELQVTERFRERVVEE 780 (848)
Q Consensus 746 ~~I~~~~l~~~~~~~~~~~~~l~i~~~a~~~l~~~ 780 (848)
...++..+.. .| +..+.+.++.+++.
T Consensus 293 ~~C~r~el~~-------rg--~~~d~~~~erva~~ 318 (344)
T KOG2170|consen 293 RSCIRAELRK-------RG--LAPDQDFVERVANS 318 (344)
T ss_pred HHHHHHHHHh-------cc--cccchHHHHHHHHh
Confidence 9998766643 22 55777888777764
No 161
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.63 E-value=5.7e-15 Score=171.19 Aligned_cols=203 Identities=21% Similarity=0.241 Sum_probs=154.8
Q ss_pred hhhhhhhhcCCCCCccCChHHHHHHHHHhccCCCCC-cEEECCCCCcHHHHHHHHHHHhhCCCCCC--------------
Q 003094 185 TNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNN-PCLIGEPGVGKTAIAEGLAQRIASGDVPD-------------- 249 (848)
Q Consensus 185 ~~l~~~~~~~~ld~iiG~~~~~~~l~~~l~~~~~~~-iLL~GppGtGKT~la~~la~~l~~~~~~~-------------- 249 (848)
..|..+|||.+|++++|++..++.|...+......| +||+||+|+|||++|+.+|+.+.+.....
T Consensus 12 ~~la~KyRP~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~ 91 (598)
T PRK09111 12 RVLARKYRPQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEH 91 (598)
T ss_pred hhHHhhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHH
Confidence 348899999999999999999999999998876665 89999999999999999999997642100
Q ss_pred -----CCCCceEEEEeCCcccccccccchHHHHHHHHHHHHHh----CCCeEEEEcccchhhhCCCCCchHHHHHHHhhh
Q 003094 250 -----TIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQ----SDEIILFIDEVHTLIGAGAAEGAIDAANILKPS 320 (848)
Q Consensus 250 -----~l~~~~v~~~~~~~l~~~~~~~g~~~~~l~~l~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~ 320 (848)
.-.+..+++++..... | ...++.+++.+.. +...|+||||+|.|. ....+.|+..
T Consensus 92 C~~i~~g~h~Dv~e~~a~s~~------g--vd~IReIie~~~~~P~~a~~KVvIIDEad~Ls--------~~a~naLLKt 155 (598)
T PRK09111 92 CQAIMEGRHVDVLEMDAASHT------G--VDDIREIIESVRYRPVSARYKVYIIDEVHMLS--------TAAFNALLKT 155 (598)
T ss_pred HHHHhcCCCCceEEecccccC------C--HHHHHHHHHHHHhchhcCCcEEEEEEChHhCC--------HHHHHHHHHH
Confidence 0112345555543211 1 2345566655542 345699999999994 3468888888
Q ss_pred hcC--CceEEEEeeChHHHHhhhhcChhhhcccCCCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcc
Q 003094 321 LAR--GELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQY 398 (848)
Q Consensus 321 l~~--~~v~vI~atn~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~ 398 (848)
++. ..+.+|++|+..+ .+.+.+.+||..+.|..++.++....+...++ ..++.++++++..++..+.+.
T Consensus 156 LEePp~~~~fIl~tte~~-----kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~----kegi~i~~eAl~lIa~~a~Gd 226 (598)
T PRK09111 156 LEEPPPHVKFIFATTEIR-----KVPVTVLSRCQRFDLRRIEADVLAAHLSRIAA----KEGVEVEDEALALIARAAEGS 226 (598)
T ss_pred HHhCCCCeEEEEEeCChh-----hhhHHHHhheeEEEecCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHcCCC
Confidence 874 5678888887665 46788999999999999999999999888776 357889999999999988765
Q ss_pred cccCCChhhHHHHHHHHhhH
Q 003094 399 ISDRFLPDKAIDLIDEAGSR 418 (848)
Q Consensus 399 ~~~~~~p~~a~~ll~~a~~~ 418 (848)
++.+..+++.+...
T Consensus 227 ------lr~al~~Ldkli~~ 240 (598)
T PRK09111 227 ------VRDGLSLLDQAIAH 240 (598)
T ss_pred ------HHHHHHHHHHHHhh
Confidence 44588888877543
No 162
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=5.5e-15 Score=172.33 Aligned_cols=202 Identities=20% Similarity=0.213 Sum_probs=154.1
Q ss_pred hhhhhhhcCCCCCccCChHHHHHHHHHhccCCCCCc-EEECCCCCcHHHHHHHHHHHhhCCCCCC--------------C
Q 003094 186 NLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNP-CLIGEPGVGKTAIAEGLAQRIASGDVPD--------------T 250 (848)
Q Consensus 186 ~l~~~~~~~~ld~iiG~~~~~~~l~~~l~~~~~~~i-LL~GppGtGKT~la~~la~~l~~~~~~~--------------~ 250 (848)
-|..++||.+|++++|++..++.|...+..+...|. ||+||+|+|||++|+.+++.+.+..... .
T Consensus 5 ~l~~k~RP~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~ 84 (576)
T PRK14965 5 VLARKYRPQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITE 84 (576)
T ss_pred HHHHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhc
Confidence 477899999999999999999999999988777764 8999999999999999999997643211 0
Q ss_pred CCCceEEEEeCCcccccccccchHHHHHHHHHHHHHh----CCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcC--C
Q 003094 251 IEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQ----SDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR--G 324 (848)
Q Consensus 251 l~~~~v~~~~~~~l~~~~~~~g~~~~~l~~l~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~--~ 324 (848)
.....+++++...- . ....++.+.+.+.. +...|+||||+|.|. ....+.|++.|+. +
T Consensus 85 g~~~d~~eid~~s~------~--~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt--------~~a~naLLk~LEepp~ 148 (576)
T PRK14965 85 GRSVDVFEIDGASN------T--GVDDIRELRENVKYLPSRSRYKIFIIDEVHMLS--------TNAFNALLKTLEEPPP 148 (576)
T ss_pred CCCCCeeeeeccCc------c--CHHHHHHHHHHHHhccccCCceEEEEEChhhCC--------HHHHHHHHHHHHcCCC
Confidence 11223455543221 1 12335555555542 345699999999994 3478899999984 5
Q ss_pred ceEEEEeeChHHHHhhhhcChhhhcccCCCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCC
Q 003094 325 ELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFL 404 (848)
Q Consensus 325 ~v~vI~atn~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~ 404 (848)
.+.+|.+|+.+. .+.+.+++||..++|..++.++....+..+++ ..++.++++++..++..+.+-+
T Consensus 149 ~~~fIl~t~~~~-----kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~----~egi~i~~~al~~la~~a~G~l----- 214 (576)
T PRK14965 149 HVKFIFATTEPH-----KVPITILSRCQRFDFRRIPLQKIVDRLRYIAD----QEGISISDAALALVARKGDGSM----- 214 (576)
T ss_pred CeEEEEEeCChh-----hhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHH----HhCCCCCHHHHHHHHHHcCCCH-----
Confidence 688888887765 67889999999999999999998888887776 3578899999999999887654
Q ss_pred hhhHHHHHHHHhhH
Q 003094 405 PDKAIDLIDEAGSR 418 (848)
Q Consensus 405 p~~a~~ll~~a~~~ 418 (848)
++++.+|+.+.+.
T Consensus 215 -r~al~~Ldqliay 227 (576)
T PRK14965 215 -RDSLSTLDQVLAF 227 (576)
T ss_pred -HHHHHHHHHHHHh
Confidence 4588888877544
No 163
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.63 E-value=6.4e-15 Score=171.21 Aligned_cols=201 Identities=24% Similarity=0.294 Sum_probs=151.8
Q ss_pred hhhhhhhhcCCCCCccCChHHHHHHHHHhccCCCCCc-EEECCCCCcHHHHHHHHHHHhhCCCCCCC-----------CC
Q 003094 185 TNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNP-CLIGEPGVGKTAIAEGLAQRIASGDVPDT-----------IE 252 (848)
Q Consensus 185 ~~l~~~~~~~~ld~iiG~~~~~~~l~~~l~~~~~~~i-LL~GppGtGKT~la~~la~~l~~~~~~~~-----------l~ 252 (848)
..|..++||.+|++++|++..++.|...+......|. ||+||+|+|||++|+.+|+.+.+...... -.
T Consensus 6 ~~l~~KyRP~~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~ 85 (725)
T PRK07133 6 KALYRKYRPKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNN 85 (725)
T ss_pred hhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcC
Confidence 4588999999999999999999999999988776765 89999999999999999999976422110 01
Q ss_pred CceEEEEeCCcccccccccchHHHHHHHHHHHHHh----CCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcC--Cce
Q 003094 253 GKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQ----SDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR--GEL 326 (848)
Q Consensus 253 ~~~v~~~~~~~l~~~~~~~g~~~~~l~~l~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~--~~v 326 (848)
...++.++... .. ....++.+.+.+.. +...|++|||+|.|. ....+.|+..++. +.+
T Consensus 86 ~~Dvieidaas------n~--~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT--------~~A~NALLKtLEEPP~~t 149 (725)
T PRK07133 86 SLDIIEMDAAS------NN--GVDEIRELIENVKNLPTQSKYKIYIIDEVHMLS--------KSAFNALLKTLEEPPKHV 149 (725)
T ss_pred CCcEEEEeccc------cC--CHHHHHHHHHHHHhchhcCCCEEEEEEChhhCC--------HHHHHHHHHHhhcCCCce
Confidence 12233333211 01 12345666666553 445799999999984 3478888888884 567
Q ss_pred EEEEeeChHHHHhhhhcChhhhcccCCCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCChh
Q 003094 327 QCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPD 406 (848)
Q Consensus 327 ~vI~atn~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~p~ 406 (848)
++|++|+.++ .+.+.+.+||+.+.|.+++.++...++...+.+ .++.++++++..++..+.|- .+
T Consensus 150 ifILaTte~~-----KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~k----egI~id~eAl~~LA~lS~Gs------lR 214 (725)
T PRK07133 150 IFILATTEVH-----KIPLTILSRVQRFNFRRISEDEIVSRLEFILEK----ENISYEKNALKLIAKLSSGS------LR 214 (725)
T ss_pred EEEEEcCChh-----hhhHHHHhhceeEEccCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC------HH
Confidence 8888887665 678899999999999999999999999887764 46788999999999988765 34
Q ss_pred hHHHHHHHHh
Q 003094 407 KAIDLIDEAG 416 (848)
Q Consensus 407 ~a~~ll~~a~ 416 (848)
.|+.+++...
T Consensus 215 ~AlslLekl~ 224 (725)
T PRK07133 215 DALSIAEQVS 224 (725)
T ss_pred HHHHHHHHHH
Confidence 5777777664
No 164
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=5.6e-15 Score=168.64 Aligned_cols=199 Identities=24% Similarity=0.247 Sum_probs=150.3
Q ss_pred hhhhhhcCCCCCccCChHHHHHHHHHhccCCCCCc-EEECCCCCcHHHHHHHHHHHhhCCC-CC------------CCCC
Q 003094 187 LTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNP-CLIGEPGVGKTAIAEGLAQRIASGD-VP------------DTIE 252 (848)
Q Consensus 187 l~~~~~~~~ld~iiG~~~~~~~l~~~l~~~~~~~i-LL~GppGtGKT~la~~la~~l~~~~-~~------------~~l~ 252 (848)
|..++||.+|++++|++..++.|...+......|. ||+|||||||||+|+.+|+.+.+.. .+ ....
T Consensus 4 l~~KyRP~~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~ 83 (504)
T PRK14963 4 LYQRARPITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGA 83 (504)
T ss_pred HHHhhCCCCHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCC
Confidence 56889999999999999999999999988877777 9999999999999999999997521 11 0112
Q ss_pred CceEEEEeCCcccccccccchHHHHHHHHHHHHH----hCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcC--Cce
Q 003094 253 GKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIK----QSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR--GEL 326 (848)
Q Consensus 253 ~~~v~~~~~~~l~~~~~~~g~~~~~l~~l~~~~~----~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~--~~v 326 (848)
...+++++.+.-. + ...++.+.+.+. .+.+.|+||||+|.+. .+.++.|+..++. ..+
T Consensus 84 h~dv~el~~~~~~------~--vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls--------~~a~naLLk~LEep~~~t 147 (504)
T PRK14963 84 HPDVLEIDAASNN------S--VEDVRDLREKVLLAPLRGGRKVYILDEAHMMS--------KSAFNALLKTLEEPPEHV 147 (504)
T ss_pred CCceEEecccccC------C--HHHHHHHHHHHhhccccCCCeEEEEECccccC--------HHHHHHHHHHHHhCCCCE
Confidence 3346666643211 1 123444444333 2356799999999873 3467778888875 557
Q ss_pred EEEEeeChHHHHhhhhcChhhhcccCCCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCChh
Q 003094 327 QCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPD 406 (848)
Q Consensus 327 ~vI~atn~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~p~ 406 (848)
++|.+|+... .+.+.+.+|+..+.|.+|+.++....++..+++ .++.++++++..++..+.+.+ +
T Consensus 148 ~~Il~t~~~~-----kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~----egi~i~~~Al~~ia~~s~Gdl------R 212 (504)
T PRK14963 148 IFILATTEPE-----KMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEA----EGREAEPEALQLVARLADGAM------R 212 (504)
T ss_pred EEEEEcCChh-----hCChHHhcceEEEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH------H
Confidence 7777777665 678999999999999999999999999888773 578889999999999887754 4
Q ss_pred hHHHHHHHHh
Q 003094 407 KAIDLIDEAG 416 (848)
Q Consensus 407 ~a~~ll~~a~ 416 (848)
+++.+|+.++
T Consensus 213 ~aln~Lekl~ 222 (504)
T PRK14963 213 DAESLLERLL 222 (504)
T ss_pred HHHHHHHHHH
Confidence 5777777664
No 165
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=3e-15 Score=156.35 Aligned_cols=204 Identities=21% Similarity=0.282 Sum_probs=147.1
Q ss_pred hccccChHHHHHHHHHHHHHHH------ccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccc
Q 003094 530 HKRVIGQDEAVKAISRAIRRAR------VGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMER 603 (848)
Q Consensus 530 ~~~vigq~~~~~~l~~~~~~~~------~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~ 603 (848)
+++|.|..++++-|.+++-..- .|+ .+|-..+|++||||||||+||+++|... +..|+.+..+.+..+
T Consensus 211 W~DIagl~~AK~lL~EAVvlPi~mPe~F~Gi---rrPWkgvLm~GPPGTGKTlLAKAvATEc---~tTFFNVSsstltSK 284 (491)
T KOG0738|consen 211 WDDIAGLHEAKKLLKEAVVLPIWMPEFFKGI---RRPWKGVLMVGPPGTGKTLLAKAVATEC---GTTFFNVSSSTLTSK 284 (491)
T ss_pred hHhhcchHHHHHHHHHHHhhhhhhHHHHhhc---ccccceeeeeCCCCCcHHHHHHHHHHhh---cCeEEEechhhhhhh
Confidence 5567777777777777664431 233 3455569999999999999999999987 677777766666433
Q ss_pred cchhcccCCCCCCcccccc--cchhHHHHcCCCeEEEEcCCCcC------------ChHHHHHHHhhhcCcEEEcCCCce
Q 003094 604 HTVSKLIGSPPGYVGYTEG--GQLTEAVRRRPYTVVLFDEIEKA------------HPDVFNMMLQILEDGRLTDSKGRT 669 (848)
Q Consensus 604 ~~~~~l~g~~~g~~g~~~~--~~l~~~~~~~~~~Vl~lDEid~l------------~~~~~~~Ll~~le~g~~~~~~g~~ 669 (848)
|.|.+|+ +.||+.++...+++|||||||.+ +..+-+.||..|+.-.-+
T Consensus 285 ------------wRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t------ 346 (491)
T KOG0738|consen 285 ------------WRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGT------ 346 (491)
T ss_pred ------------hccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccc------
Confidence 8888877 78999999999999999999987 345889999999862211
Q ss_pred eecCC-eEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHH
Q 003094 670 VDFKN-TLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEI 748 (848)
Q Consensus 670 v~~~~-~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I 748 (848)
....+ +.++++||++=+ ++.+|+.||..-|+++-++.+....+
T Consensus 347 ~e~~k~VmVLAATN~PWd------------------------------------iDEAlrRRlEKRIyIPLP~~~~R~~L 390 (491)
T KOG0738|consen 347 LENSKVVMVLAATNFPWD------------------------------------IDEALRRRLEKRIYIPLPDAEARSAL 390 (491)
T ss_pred cccceeEEEEeccCCCcc------------------------------------hHHHHHHHHhhheeeeCCCHHHHHHH
Confidence 11123 445566775443 46889999977899999999999989
Q ss_pred HHHHHHHHHHHHhcCCCeEeec-HHHHHHHHHccCCCCCCchHHHHHHHHHHHHHHHHH
Q 003094 749 ADIMLKEVFDRLKTKDIELQVT-ERFRERVVEEGYNPSYGARPLRRAIMRLLEDSMAEK 806 (848)
Q Consensus 749 ~~~~l~~~~~~~~~~~~~l~i~-~~a~~~l~~~~~~~~~g~r~L~~~i~~~l~~~l~~~ 806 (848)
++..|... ..+ +--++.|++ -...|..-++.++++.+-++++=+.
T Consensus 391 i~~~l~~~-----------~~~~~~~~~~lae--~~eGySGaDI~nvCreAsm~~mRR~ 436 (491)
T KOG0738|consen 391 IKILLRSV-----------ELDDPVNLEDLAE--RSEGYSGADITNVCREASMMAMRRK 436 (491)
T ss_pred HHHhhccc-----------cCCCCccHHHHHH--HhcCCChHHHHHHHHHHHHHHHHHH
Confidence 88877542 122 223444555 2334566789999999888887765
No 166
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.63 E-value=2.8e-15 Score=174.18 Aligned_cols=193 Identities=20% Similarity=0.328 Sum_probs=133.4
Q ss_pred HHHHHHHhhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCce---EEeccc
Q 003094 522 LLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAM---IRLDMS 598 (848)
Q Consensus 522 l~~l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~---i~i~~~ 598 (848)
..++++..+++|+||+.+++.+.+++... +..+.+||+||+|+|||++|+++|+.+++.+... .+-.|.
T Consensus 9 ~~KyRP~~f~dIiGQe~~v~~L~~aI~~~--------rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~ 80 (725)
T PRK07133 9 YRKYRPKTFDDIVGQDHIVQTLKNIIKSN--------KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECI 80 (725)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHcC--------CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHH
Confidence 35677788899999999999999888743 2224589999999999999999999997643211 111121
Q ss_pred ccccccchhcccCCCCCCcccccccchhHHHHc----CCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecCC
Q 003094 599 EFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRR----RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKN 674 (848)
Q Consensus 599 ~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~----~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~ 674 (848)
...+.+ +..+.+...+..|....+.+.+.+.. +.+.|++|||+|.++...++.|++.||+- +.+
T Consensus 81 ~~~~~~-~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEP-----------P~~ 148 (725)
T PRK07133 81 ENVNNS-LDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEP-----------PKH 148 (725)
T ss_pred HhhcCC-CcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcC-----------CCc
Confidence 111111 11111111112233223444444443 45679999999999999999999999982 357
Q ss_pred eEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHHHHHH
Q 003094 675 TLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLK 754 (848)
Q Consensus 675 ~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~~~l~ 754 (848)
++||++|+... .+.+.+++|| ..+.|.+++.+++...+...+.
T Consensus 149 tifILaTte~~------------------------------------KLl~TI~SRc-q~ieF~~L~~eeI~~~L~~il~ 191 (725)
T PRK07133 149 VIFILATTEVH------------------------------------KIPLTILSRV-QRFNFRRISEDEIVSRLEFILE 191 (725)
T ss_pred eEEEEEcCChh------------------------------------hhhHHHHhhc-eeEEccCCCHHHHHHHHHHHHH
Confidence 78888875221 2457899999 8999999999999998877665
Q ss_pred HHHHHHhcCCCeEeecHHHHHHHHHc
Q 003094 755 EVFDRLKTKDIELQVTERFRERVVEE 780 (848)
Q Consensus 755 ~~~~~~~~~~~~l~i~~~a~~~l~~~ 780 (848)
+. | +.+++++++.|+..
T Consensus 192 ke-------g--I~id~eAl~~LA~l 208 (725)
T PRK07133 192 KE-------N--ISYEKNALKLIAKL 208 (725)
T ss_pred Hc-------C--CCCCHHHHHHHHHH
Confidence 41 2 45788888888874
No 167
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.63 E-value=5.6e-15 Score=161.71 Aligned_cols=185 Identities=17% Similarity=0.224 Sum_probs=137.8
Q ss_pred hhhhhhhcCCCCCccCChHHHHHHHHHhccCCCCCcEE-ECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcc
Q 003094 186 NLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCL-IGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLL 264 (848)
Q Consensus 186 ~l~~~~~~~~ld~iiG~~~~~~~l~~~l~~~~~~~iLL-~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l 264 (848)
.|.+++||.+|++++|++...+.+...+..+..+|++| +||||+|||++++++++.+ +.+++.++++.
T Consensus 10 ~w~~kyrP~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~----------~~~~~~i~~~~- 78 (316)
T PHA02544 10 MWEQKYRPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV----------GAEVLFVNGSD- 78 (316)
T ss_pred cceeccCCCcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh----------CccceEeccCc-
Confidence 58999999999999999999999999998877777776 8999999999999999987 34567777654
Q ss_pred cccccccchHHHHHHHHHHHHH-hCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhc--CCceEEEEeeChHHHHhhh
Q 003094 265 VAGTKYRGEFEERLKKLMEEIK-QSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLA--RGELQCIGATTLDEYRKHI 341 (848)
Q Consensus 265 ~~~~~~~g~~~~~l~~l~~~~~-~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~--~~~v~vI~atn~~~~~~~~ 341 (848)
. . .......+........ ...+.+|||||+|.+.. .+..+.|+.+++ ...+.+|+++|...
T Consensus 79 ~--~--~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~-------~~~~~~L~~~le~~~~~~~~Ilt~n~~~----- 142 (316)
T PHA02544 79 C--R--IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGL-------ADAQRHLRSFMEAYSKNCSFIITANNKN----- 142 (316)
T ss_pred c--c--HHHHHHHHHHHHHhhcccCCCeEEEEECcccccC-------HHHHHHHHHHHHhcCCCceEEEEcCChh-----
Confidence 1 1 1222222322222221 13467999999998721 224566777676 35678888888765
Q ss_pred hcChhhhcccCCCcCCCCCHHHHHHHHHHHHHHHh---hhhcCCCChHHHHHHHhhhhc
Q 003094 342 EKDPALERRFQPVKVPEPSVDETIQILKGLRERYE---IHHKLRYTDEALVSAAQLSYQ 397 (848)
Q Consensus 342 ~~d~al~~Rf~~i~~~~p~~~e~~~Il~~~~~~~~---~~~~~~~s~~~l~~l~~~s~~ 397 (848)
.+.+++.+||..+.|+.|+.+++.++++.+..+.. ...++.++++++..++..+.+
T Consensus 143 ~l~~~l~sR~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~~~ 201 (316)
T PHA02544 143 GIIEPLRSRCRVIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNFP 201 (316)
T ss_pred hchHHHHhhceEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCC
Confidence 68899999999999999999999988887655442 345778889888888875443
No 168
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.62 E-value=5.9e-15 Score=171.23 Aligned_cols=204 Identities=19% Similarity=0.289 Sum_probs=138.4
Q ss_pred HHHHHHhhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCC----CceEEe-cc
Q 003094 523 LKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSE----EAMIRL-DM 597 (848)
Q Consensus 523 ~~l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~----~~~i~i-~~ 597 (848)
.++++..+++++||+++++.+.+++...+ ..+.+||+||+|||||++|+.+|+.+.+.. .++-.+ +|
T Consensus 8 ~k~rP~~f~~viGq~~v~~~L~~~i~~~~--------~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C 79 (559)
T PRK05563 8 RKWRPQTFEDVVGQEHITKTLKNAIKQGK--------ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEIC 79 (559)
T ss_pred HHhCCCcHHhccCcHHHHHHHHHHHHcCC--------CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHH
Confidence 56777889999999999999998887532 224589999999999999999999986543 122111 12
Q ss_pred cccccccc--hhcccCCCCCCcccccccchhHHHHc----CCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceee
Q 003094 598 SEFMERHT--VSKLIGSPPGYVGYTEGGQLTEAVRR----RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVD 671 (848)
Q Consensus 598 ~~~~~~~~--~~~l~g~~~g~~g~~~~~~l~~~~~~----~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~ 671 (848)
..+..... +..+ .. ....|.++.+.+.+.+.. +.+.|++|||+|+++...+|.|++.||+-
T Consensus 80 ~~i~~g~~~dv~ei-da-as~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEep----------- 146 (559)
T PRK05563 80 KAITNGSLMDVIEI-DA-ASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEP----------- 146 (559)
T ss_pred HHHhcCCCCCeEEe-ec-cccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCC-----------
Confidence 22211100 0011 10 111222223344444443 44789999999999999999999999972
Q ss_pred cCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHHH
Q 003094 672 FKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADI 751 (848)
Q Consensus 672 ~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~~ 751 (848)
+.+++||++|+... .+.+.+++|| ..+.|.+++.+++...+..
T Consensus 147 p~~~ifIlatt~~~------------------------------------ki~~tI~SRc-~~~~f~~~~~~ei~~~L~~ 189 (559)
T PRK05563 147 PAHVIFILATTEPH------------------------------------KIPATILSRC-QRFDFKRISVEDIVERLKY 189 (559)
T ss_pred CCCeEEEEEeCChh------------------------------------hCcHHHHhHh-eEEecCCCCHHHHHHHHHH
Confidence 36788888875221 2568899999 8899999999999998877
Q ss_pred HHHHHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHH
Q 003094 752 MLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIM 796 (848)
Q Consensus 752 ~l~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~ 796 (848)
.+.+ ..+.+++++++.|+..+- ++.|...+.++
T Consensus 190 i~~~---------egi~i~~~al~~ia~~s~---G~~R~al~~Ld 222 (559)
T PRK05563 190 ILDK---------EGIEYEDEALRLIARAAE---GGMRDALSILD 222 (559)
T ss_pred HHHH---------cCCCCCHHHHHHHHHHcC---CCHHHHHHHHH
Confidence 7754 234578999999888421 34455444444
No 169
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.62 E-value=6e-15 Score=164.71 Aligned_cols=203 Identities=22% Similarity=0.328 Sum_probs=138.3
Q ss_pred HhhccccChHHHHHHHHHHHHHH--------HccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccc
Q 003094 528 TLHKRVIGQDEAVKAISRAIRRA--------RVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSE 599 (848)
Q Consensus 528 ~l~~~vigq~~~~~~l~~~~~~~--------~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~ 599 (848)
..++++.|.+..++.|...+... ..|+..| .++||+||||||||++|+++|+.+ +.+|+.+++++
T Consensus 128 ~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p----~gvLL~GppGtGKT~lAkaia~~~---~~~~i~v~~~~ 200 (389)
T PRK03992 128 VTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPP----KGVLLYGPPGTGKTLLAKAVAHET---NATFIRVVGSE 200 (389)
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCC----CceEEECCCCCChHHHHHHHHHHh---CCCEEEeehHH
Confidence 44567899999999998887543 1233333 359999999999999999999987 67899888877
Q ss_pred cccccchhcccCCCCCCcccccc--cchhHHHHcCCCeEEEEcCCCcC-----------ChHHHHHHHhhhcCcEEEcCC
Q 003094 600 FMERHTVSKLIGSPPGYVGYTEG--GQLTEAVRRRPYTVVLFDEIEKA-----------HPDVFNMMLQILEDGRLTDSK 666 (848)
Q Consensus 600 ~~~~~~~~~l~g~~~g~~g~~~~--~~l~~~~~~~~~~Vl~lDEid~l-----------~~~~~~~Ll~~le~g~~~~~~ 666 (848)
+... |+|..+. ..++..++...++||||||+|.+ +++++..+++++..-.-.
T Consensus 201 l~~~------------~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~--- 265 (389)
T PRK03992 201 LVQK------------FIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGF--- 265 (389)
T ss_pred HhHh------------hccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhcccc---
Confidence 6432 4443222 34566666777899999999987 355666676666431100
Q ss_pred CceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhh--hccCeEEEcCCCCHHH
Q 003094 667 GRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFL--NRLDEMIVFRQLTKLE 744 (848)
Q Consensus 667 g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll--~R~d~~i~f~~l~~~e 744 (848)
....+++||+|||... .++++++ +|||..|.|++|+.++
T Consensus 266 ---~~~~~v~VI~aTn~~~------------------------------------~ld~allRpgRfd~~I~v~~P~~~~ 306 (389)
T PRK03992 266 ---DPRGNVKIIAATNRID------------------------------------ILDPAILRPGRFDRIIEVPLPDEEG 306 (389)
T ss_pred ---CCCCCEEEEEecCChh------------------------------------hCCHHHcCCccCceEEEECCCCHHH
Confidence 0124778999998432 2567777 4999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHHHHHHHHH
Q 003094 745 VKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSM 803 (848)
Q Consensus 745 l~~I~~~~l~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~l~~~l 803 (848)
..+|+...+..+ ...-.++ +..|+. ....+...+++..+..+...++
T Consensus 307 R~~Il~~~~~~~-------~~~~~~~---~~~la~--~t~g~sgadl~~l~~eA~~~a~ 353 (389)
T PRK03992 307 RLEILKIHTRKM-------NLADDVD---LEELAE--LTEGASGADLKAICTEAGMFAI 353 (389)
T ss_pred HHHHHHHHhccC-------CCCCcCC---HHHHHH--HcCCCCHHHHHHHHHHHHHHHH
Confidence 999997665431 1111122 344555 3445667788877776655443
No 170
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=2e-15 Score=175.95 Aligned_cols=191 Identities=20% Similarity=0.312 Sum_probs=133.4
Q ss_pred HHHHHHhhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCC----ceEE-ecc
Q 003094 523 LKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEE----AMIR-LDM 597 (848)
Q Consensus 523 ~~l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~----~~i~-i~~ 597 (848)
.++++..+++++||+++++.|.+.+... +..+.+||+||+|+|||++|+++|+.+++... ++-. -.|
T Consensus 8 ~k~RP~~f~~iiGq~~v~~~L~~~i~~~--------~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c 79 (576)
T PRK14965 8 RKYRPQTFSDLTGQEHVSRTLQNAIDTG--------RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPC 79 (576)
T ss_pred HHhCCCCHHHccCcHHHHHHHHHHHHcC--------CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHH
Confidence 4667778899999999999999888743 22245899999999999999999999875321 2211 122
Q ss_pred cccccccchh--cccCCCCCCcccccccchhHHHHc----CCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceee
Q 003094 598 SEFMERHTVS--KLIGSPPGYVGYTEGGQLTEAVRR----RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVD 671 (848)
Q Consensus 598 ~~~~~~~~~~--~l~g~~~g~~g~~~~~~l~~~~~~----~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~ 671 (848)
..+....... .+-|. +..|.++.+.+.+.+.. +.+.|+||||+|+++...+|.|++.||+ +
T Consensus 80 ~~i~~g~~~d~~eid~~--s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEe-----------p 146 (576)
T PRK14965 80 VEITEGRSVDVFEIDGA--SNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEE-----------P 146 (576)
T ss_pred HHHhcCCCCCeeeeecc--CccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHc-----------C
Confidence 2222111111 11111 12222233344444443 3467999999999999999999999998 2
Q ss_pred cCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHHH
Q 003094 672 FKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADI 751 (848)
Q Consensus 672 ~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~~ 751 (848)
..+++||++||... .+.+.+++|| ..+.|.+++.+++...+..
T Consensus 147 p~~~~fIl~t~~~~------------------------------------kl~~tI~SRc-~~~~f~~l~~~~i~~~L~~ 189 (576)
T PRK14965 147 PPHVKFIFATTEPH------------------------------------KVPITILSRC-QRFDFRRIPLQKIVDRLRY 189 (576)
T ss_pred CCCeEEEEEeCChh------------------------------------hhhHHHHHhh-hhhhcCCCCHHHHHHHHHH
Confidence 36788998886322 2457899999 8999999999999888877
Q ss_pred HHHHHHHHHhcCCCeEeecHHHHHHHHHc
Q 003094 752 MLKEVFDRLKTKDIELQVTERFRERVVEE 780 (848)
Q Consensus 752 ~l~~~~~~~~~~~~~l~i~~~a~~~l~~~ 780 (848)
.+.+ ..+.++++++..|+..
T Consensus 190 i~~~---------egi~i~~~al~~la~~ 209 (576)
T PRK14965 190 IADQ---------EGISISDAALALVARK 209 (576)
T ss_pred HHHH---------hCCCCCHHHHHHHHHH
Confidence 7654 2345889999999884
No 171
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.62 E-value=1.8e-14 Score=156.94 Aligned_cols=180 Identities=18% Similarity=0.280 Sum_probs=125.2
Q ss_pred hccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhcc
Q 003094 530 HKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 609 (848)
Q Consensus 530 ~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l 609 (848)
+++++||++.++.+...+...... ..+..+++|+||||||||++|+++|+.+ +..+...+......
T Consensus 3 ~~~~iG~~~~~~~l~~~l~~~~~~----~~~~~~~ll~Gp~G~GKT~la~~ia~~~---~~~~~~~~~~~~~~------- 68 (305)
T TIGR00635 3 LAEFIGQEKVKEQLQLFIEAAKMR----QEALDHLLLYGPPGLGKTTLAHIIANEM---GVNLKITSGPALEK------- 68 (305)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhc----CCCCCeEEEECCCCCCHHHHHHHHHHHh---CCCEEEeccchhcC-------
Confidence 467999999999999888655322 2233469999999999999999999987 33343333221110
Q ss_pred cCCCCCCcccccccchhHHHHc-CCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEc---C----CCceeecCCeEEEEec
Q 003094 610 IGSPPGYVGYTEGGQLTEAVRR-RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTD---S----KGRTVDFKNTLLIMTS 681 (848)
Q Consensus 610 ~g~~~g~~g~~~~~~l~~~~~~-~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~---~----~g~~v~~~~~iiI~ts 681 (848)
.+.+.+.+.. ..+.||||||++.+++..++.|+.+|++..... . .......+...+|.+|
T Consensus 69 ------------~~~l~~~l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t 136 (305)
T TIGR00635 69 ------------PGDLAAILTNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGAT 136 (305)
T ss_pred ------------chhHHHHHHhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEec
Confidence 1122233222 345799999999999999999999998765321 0 0111233446667766
Q ss_pred CCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHHHHHHHHHHHHh
Q 003094 682 NVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLK 761 (848)
Q Consensus 682 N~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~~~l~~~~~~~~ 761 (848)
|... .+.+++++||..++.|.+++.+++.+++...+..
T Consensus 137 ~~~~------------------------------------~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~------ 174 (305)
T TIGR00635 137 TRAG------------------------------------MLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGL------ 174 (305)
T ss_pred CCcc------------------------------------ccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHH------
Confidence 5322 2567899999888999999999999999766653
Q ss_pred cCCCeEeecHHHHHHHHHc
Q 003094 762 TKDIELQVTERFRERVVEE 780 (848)
Q Consensus 762 ~~~~~l~i~~~a~~~l~~~ 780 (848)
..+.++++++++|++.
T Consensus 175 ---~~~~~~~~al~~ia~~ 190 (305)
T TIGR00635 175 ---LNVEIEPEAALEIARR 190 (305)
T ss_pred ---hCCCcCHHHHHHHHHH
Confidence 2346899999999985
No 172
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.62 E-value=8.4e-15 Score=161.96 Aligned_cols=202 Identities=21% Similarity=0.296 Sum_probs=143.3
Q ss_pred hhhhhhhcCCCCCccCChHHHHHHHHHhccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCccc
Q 003094 186 NLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLV 265 (848)
Q Consensus 186 ~l~~~~~~~~ld~iiG~~~~~~~l~~~l~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~ 265 (848)
.|.++++|..+++++|++..++.+.+.+..+..++++|+||||||||++|+++++.+..... +.+++++++..+.
T Consensus 4 ~w~~ky~P~~~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~-----~~~~~~i~~~~~~ 78 (337)
T PRK12402 4 LWTEKYRPALLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDPW-----ENNFTEFNVADFF 78 (337)
T ss_pred chHHhhCCCcHHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCccc-----ccceEEechhhhh
Confidence 58999999999999999999999999998877778999999999999999999999864321 2345677765543
Q ss_pred cccc-----------ccch-------HHHHHHHHHHHHHh-----CCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhc
Q 003094 266 AGTK-----------YRGE-------FEERLKKLMEEIKQ-----SDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLA 322 (848)
Q Consensus 266 ~~~~-----------~~g~-------~~~~l~~l~~~~~~-----~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~ 322 (848)
.... ..+. ....++.+...... ..+.+|||||+|.+.. +..+.|..+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~--------~~~~~L~~~le 150 (337)
T PRK12402 79 DQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRE--------DAQQALRRIME 150 (337)
T ss_pred hcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCH--------HHHHHHHHHHH
Confidence 1110 0000 11223333333322 2345999999998842 34566666665
Q ss_pred --CCceEEEEeeChHHHHhhhhcChhhhcccCCCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccc
Q 003094 323 --RGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYIS 400 (848)
Q Consensus 323 --~~~v~vI~atn~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~ 400 (848)
.....+|.+++.+. .+.+.+.+|+..+.+++|+.++...+++..+.+ .++.++++++..++..+.+.
T Consensus 151 ~~~~~~~~Il~~~~~~-----~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~----~~~~~~~~al~~l~~~~~gd-- 219 (337)
T PRK12402 151 QYSRTCRFIIATRQPS-----KLIPPIRSRCLPLFFRAPTDDELVDVLESIAEA----EGVDYDDDGLELIAYYAGGD-- 219 (337)
T ss_pred hccCCCeEEEEeCChh-----hCchhhcCCceEEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC--
Confidence 23355666665544 467789999999999999999999999887763 57789999999999877543
Q ss_pred cCCChhhHHHHHHHH
Q 003094 401 DRFLPDKAIDLIDEA 415 (848)
Q Consensus 401 ~~~~p~~a~~ll~~a 415 (848)
.+.++..++.+
T Consensus 220 ----lr~l~~~l~~~ 230 (337)
T PRK12402 220 ----LRKAILTLQTA 230 (337)
T ss_pred ----HHHHHHHHHHH
Confidence 33455555543
No 173
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.62 E-value=3.4e-15 Score=154.28 Aligned_cols=204 Identities=21% Similarity=0.281 Sum_probs=132.7
Q ss_pred HHHHhhccccChHHHHHH---HHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccc
Q 003094 525 MEETLHKRVIGQDEAVKA---ISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFM 601 (848)
Q Consensus 525 l~~~l~~~vigq~~~~~~---l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~ 601 (848)
+++.-.++++||++.+.+ |...+++. ...+++||||||||||++|+.|+...-.....||.+....-
T Consensus 132 mRPktL~dyvGQ~hlv~q~gllrs~ieq~---------~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a- 201 (554)
T KOG2028|consen 132 MRPKTLDDYVGQSHLVGQDGLLRSLIEQN---------RIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNA- 201 (554)
T ss_pred cCcchHHHhcchhhhcCcchHHHHHHHcC---------CCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEecccc-
Confidence 334444567777777643 33334322 23469999999999999999999876333344554433221
Q ss_pred cccchhcccCCCCCCcccccccchhHHHHc-----CCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecCCeE
Q 003094 602 ERHTVSKLIGSPPGYVGYTEGGQLTEAVRR-----RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTL 676 (848)
Q Consensus 602 ~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~-----~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~i 676 (848)
+..+-+.+++..++ ....|||||||+..+...|+.||..+|+|.++
T Consensus 202 ----------------~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQD~fLP~VE~G~I~------------- 252 (554)
T KOG2028|consen 202 ----------------KTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQDTFLPHVENGDIT------------- 252 (554)
T ss_pred ----------------chHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhhhcccceeccCceE-------------
Confidence 11111223333221 34579999999999999999999999998755
Q ss_pred EEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHHHHHHHH
Q 003094 677 LIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEV 756 (848)
Q Consensus 677 iI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~~~l~~~ 756 (848)
+|.+|. ++.+| .++.+|++|| .++++.+|+.+++..|+.+.+..+
T Consensus 253 lIGATT---------------------ENPSF-------------qln~aLlSRC-~VfvLekL~~n~v~~iL~raia~l 297 (554)
T KOG2028|consen 253 LIGATT---------------------ENPSF-------------QLNAALLSRC-RVFVLEKLPVNAVVTILMRAIASL 297 (554)
T ss_pred EEeccc---------------------CCCcc-------------chhHHHHhcc-ceeEeccCCHHHHHHHHHHHHHhh
Confidence 555553 11222 1568899999 999999999999999999888766
Q ss_pred HHHHhcC----CCeEeecHHHHHHHHHccCCCCCCchHHHHHHHHHHHHHHHHHHHc
Q 003094 757 FDRLKTK----DIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSMAEKMLA 809 (848)
Q Consensus 757 ~~~~~~~----~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~l~~~l~~~~l~ 809 (848)
.+.-+.. +..+.+++.++++|+.. ...+-|.+++ .++-.++..+..
T Consensus 298 ~dser~~~~l~n~s~~ve~siidyla~l------sdGDaR~aLN-~Lems~~m~~tr 347 (554)
T KOG2028|consen 298 GDSERPTDPLPNSSMFVEDSIIDYLAYL------SDGDARAALN-ALEMSLSMFCTR 347 (554)
T ss_pred ccccccCCCCCCcchhhhHHHHHHHHHh------cCchHHHHHH-HHHHHHHHHHhh
Confidence 5433321 33456899999999984 2234444444 344444444443
No 174
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.62 E-value=3.3e-15 Score=173.18 Aligned_cols=207 Identities=19% Similarity=0.218 Sum_probs=140.4
Q ss_pred HHHHHHhhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCC---------ceE
Q 003094 523 LKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEE---------AMI 593 (848)
Q Consensus 523 ~~l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~---------~~i 593 (848)
.++++..+++|+||+.+++.|.+.+... +....+||+||+|+|||++|+++|+.+++... ++-
T Consensus 16 ~KyRP~~f~dliGq~~~v~~L~~~~~~g--------ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg 87 (598)
T PRK09111 16 RKYRPQTFDDLIGQEAMVRTLTNAFETG--------RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCG 87 (598)
T ss_pred hhhCCCCHHHhcCcHHHHHHHHHHHHcC--------CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCc
Confidence 4567778899999999999999988743 22346999999999999999999999865421 111
Q ss_pred -EecccccccccchhcccCCCCCCcccccccchhHHHHc----CCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCc
Q 003094 594 -RLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRR----RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGR 668 (848)
Q Consensus 594 -~i~~~~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~----~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~ 668 (848)
+-.|..+.......-+.-.+.+..|.+..+.+.+.++. +.+.|+||||+|.++...+|.|++.||+
T Consensus 88 ~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEe--------- 158 (598)
T PRK09111 88 VGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEE--------- 158 (598)
T ss_pred ccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHh---------
Confidence 11222222221111111111223333333445444543 3478999999999999999999999998
Q ss_pred eeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHH
Q 003094 669 TVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEI 748 (848)
Q Consensus 669 ~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I 748 (848)
+..+++||++++...+ +.+.+++|| ..+.|.+++.+++...
T Consensus 159 --Pp~~~~fIl~tte~~k------------------------------------ll~tI~SRc-q~~~f~~l~~~el~~~ 199 (598)
T PRK09111 159 --PPPHVKFIFATTEIRK------------------------------------VPVTVLSRC-QRFDLRRIEADVLAAH 199 (598)
T ss_pred --CCCCeEEEEEeCChhh------------------------------------hhHHHHhhe-eEEEecCCCHHHHHHH
Confidence 2357788888752211 346789999 8999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHHH
Q 003094 749 ADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMR 797 (848)
Q Consensus 749 ~~~~l~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~ 797 (848)
+...+.+ ..+.++++++++|+...- ++.|.+.+.+++
T Consensus 200 L~~i~~k---------egi~i~~eAl~lIa~~a~---Gdlr~al~~Ldk 236 (598)
T PRK09111 200 LSRIAAK---------EGVEVEDEALALIARAAE---GSVRDGLSLLDQ 236 (598)
T ss_pred HHHHHHH---------cCCCCCHHHHHHHHHHcC---CCHHHHHHHHHH
Confidence 9777754 234589999999988421 234444444443
No 175
>PRK04195 replication factor C large subunit; Provisional
Probab=99.62 E-value=2.7e-15 Score=172.73 Aligned_cols=183 Identities=21% Similarity=0.267 Sum_probs=139.7
Q ss_pred hhhhhhhcCCCCCccCChHHHHHHHHHhcc----CCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeC
Q 003094 186 NLTKLAEEGKLDPVVGRQPQIERVVQILGR----RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDM 261 (848)
Q Consensus 186 ~l~~~~~~~~ld~iiG~~~~~~~l~~~l~~----~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~ 261 (848)
.|+++++|.++++++|+++.+++|..++.. ..++++||+||||||||++|+++|+.+ +.+++.++.
T Consensus 3 ~W~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el----------~~~~ielna 72 (482)
T PRK04195 3 PWVEKYRPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY----------GWEVIELNA 72 (482)
T ss_pred CchhhcCCCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc----------CCCEEEEcc
Confidence 689999999999999999999998887753 236789999999999999999999998 456788887
Q ss_pred CcccccccccchHHHHHHHHHHHHHh------CCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCCceEEEEeeChH
Q 003094 262 GLLVAGTKYRGEFEERLKKLMEEIKQ------SDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATTLD 335 (848)
Q Consensus 262 ~~l~~~~~~~g~~~~~l~~l~~~~~~------~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~atn~~ 335 (848)
++... ...+..+...+.. ..+.+|+|||+|.+... ......+.|..+++.....+|.++|..
T Consensus 73 sd~r~--------~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~----~d~~~~~aL~~~l~~~~~~iIli~n~~ 140 (482)
T PRK04195 73 SDQRT--------ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGN----EDRGGARAILELIKKAKQPIILTANDP 140 (482)
T ss_pred ccccc--------HHHHHHHHHHhhccCcccCCCCeEEEEecCcccccc----cchhHHHHHHHHHHcCCCCEEEeccCc
Confidence 65431 1123333333321 24679999999998642 122345666677776667777788765
Q ss_pred HHHhhhhcCh-hhhcccCCCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhccc
Q 003094 336 EYRKHIEKDP-ALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYI 399 (848)
Q Consensus 336 ~~~~~~~~d~-al~~Rf~~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~ 399 (848)
. .+.+ .+.+|+..|.|+.|+.+++..+++.++. ..++.++++++..++..+.+.+
T Consensus 141 ~-----~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~----~egi~i~~eaL~~Ia~~s~GDl 196 (482)
T PRK04195 141 Y-----DPSLRELRNACLMIEFKRLSTRSIVPVLKRICR----KEGIECDDEALKEIAERSGGDL 196 (482)
T ss_pred c-----ccchhhHhccceEEEecCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHcCCCH
Confidence 4 4555 7888999999999999999999998876 3678899999999999876643
No 176
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=6.6e-15 Score=145.01 Aligned_cols=163 Identities=25% Similarity=0.432 Sum_probs=116.7
Q ss_pred cccChHHHHHHHHHHHHH--------HHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccc
Q 003094 532 RVIGQDEAVKAISRAIRR--------ARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMER 603 (848)
Q Consensus 532 ~vigq~~~~~~l~~~~~~--------~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~ 603 (848)
++.|.+-.++.|+++++. ...|+.+|+ .+|+|||||||||++|+++|+.- ...|+++..++|...
T Consensus 156 diggld~qkqeireavelplt~~~ly~qigidppr----gvllygppg~gktml~kava~~t---~a~firvvgsefvqk 228 (408)
T KOG0727|consen 156 DIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPR----GVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGSEFVQK 228 (408)
T ss_pred ccccchhhHHHHHHHHhccchHHHHHHHhCCCCCc----ceEEeCCCCCcHHHHHHHHhhcc---chheeeeccHHHHHH
Confidence 455555555555555432 234666654 48999999999999999999875 688999999998654
Q ss_pred cchhcccCCCCCCcccccc--cchhHHHHcCCCeEEEEcCCCcC-----------ChHHHHHHHhhhcCcEEEcCCCcee
Q 003094 604 HTVSKLIGSPPGYVGYTEG--GQLTEAVRRRPYTVVLFDEIEKA-----------HPDVFNMMLQILEDGRLTDSKGRTV 670 (848)
Q Consensus 604 ~~~~~l~g~~~g~~g~~~~--~~l~~~~~~~~~~Vl~lDEid~l-----------~~~~~~~Ll~~le~g~~~~~~g~~v 670 (848)
|.|+... +.++..++++.++||||||||.+ +.++|..|+.++..-.-.|
T Consensus 229 ------------ylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfd------ 290 (408)
T KOG0727|consen 229 ------------YLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFD------ 290 (408)
T ss_pred ------------HhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcC------
Confidence 4443322 56788889999999999999965 4567777777664311000
Q ss_pred ecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhh--hccCeEEEcCCCCHHHHHHH
Q 003094 671 DFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFL--NRLDEMIVFRQLTKLEVKEI 748 (848)
Q Consensus 671 ~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll--~R~d~~i~f~~l~~~el~~I 748 (848)
...|+-+||+||.... ++|+|+ +|+|..|.|+-++..+.+-+
T Consensus 291 q~~nvkvimatnradt------------------------------------ldpallrpgrldrkiefplpdrrqkrlv 334 (408)
T KOG0727|consen 291 QTTNVKVIMATNRADT------------------------------------LDPALLRPGRLDRKIEFPLPDRRQKRLV 334 (408)
T ss_pred cccceEEEEecCcccc------------------------------------cCHhhcCCccccccccCCCCchhhhhhh
Confidence 1258899999995543 668887 79999999998888887766
Q ss_pred HHHHHHH
Q 003094 749 ADIMLKE 755 (848)
Q Consensus 749 ~~~~l~~ 755 (848)
+..+..+
T Consensus 335 f~titsk 341 (408)
T KOG0727|consen 335 FSTITSK 341 (408)
T ss_pred HHhhhhc
Confidence 6555544
No 177
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.61 E-value=6.1e-15 Score=168.37 Aligned_cols=192 Identities=21% Similarity=0.254 Sum_probs=130.3
Q ss_pred HHHHHHhhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCC---ceE-Eeccc
Q 003094 523 LKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEE---AMI-RLDMS 598 (848)
Q Consensus 523 ~~l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~---~~i-~i~~~ 598 (848)
.++++..+++|+||+++++.|.+.+...+ ..+.+||+||||||||++|+++|+.+++.+. ++. +-.|.
T Consensus 6 ~KyRP~~~~dvvGq~~v~~~L~~~i~~~~--------l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~ 77 (504)
T PRK14963 6 QRARPITFDEVVGQEHVKEVLLAALRQGR--------LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCL 77 (504)
T ss_pred HhhCCCCHHHhcChHHHHHHHHHHHHcCC--------CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhH
Confidence 56777788899999999999988887532 1234699999999999999999999864321 111 11111
Q ss_pred ccccccchh-cccCCCCCCcccccccchhHHHHc----CCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecC
Q 003094 599 EFMERHTVS-KLIGSPPGYVGYTEGGQLTEAVRR----RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFK 673 (848)
Q Consensus 599 ~~~~~~~~~-~l~g~~~g~~g~~~~~~l~~~~~~----~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~ 673 (848)
.+....... ..++. .+..+....+.+.+.+.. +.+.||||||+|.++...++.|++.|++. ..
T Consensus 78 ~i~~~~h~dv~el~~-~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep-----------~~ 145 (504)
T PRK14963 78 AVRRGAHPDVLEIDA-ASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEP-----------PE 145 (504)
T ss_pred HHhcCCCCceEEecc-cccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhC-----------CC
Confidence 111110000 01111 111122222333333332 34679999999999999999999999873 25
Q ss_pred CeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHHHHH
Q 003094 674 NTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIML 753 (848)
Q Consensus 674 ~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~~~l 753 (848)
+++||+++|... .+.+.+.+|| ..+.|.+++.+++...+...+
T Consensus 146 ~t~~Il~t~~~~------------------------------------kl~~~I~SRc-~~~~f~~ls~~el~~~L~~i~ 188 (504)
T PRK14963 146 HVIFILATTEPE------------------------------------KMPPTILSRT-QHFRFRRLTEEEIAGKLRRLL 188 (504)
T ss_pred CEEEEEEcCChh------------------------------------hCChHHhcce-EEEEecCCCHHHHHHHHHHHH
Confidence 678888876322 2557888999 799999999999999998777
Q ss_pred HHHHHHHhcCCCeEeecHHHHHHHHHc
Q 003094 754 KEVFDRLKTKDIELQVTERFRERVVEE 780 (848)
Q Consensus 754 ~~~~~~~~~~~~~l~i~~~a~~~l~~~ 780 (848)
.+ ..+.++++++++|+..
T Consensus 189 ~~---------egi~i~~~Al~~ia~~ 206 (504)
T PRK14963 189 EA---------EGREAEPEALQLVARL 206 (504)
T ss_pred HH---------cCCCCCHHHHHHHHHH
Confidence 64 2345799999999984
No 178
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.61 E-value=3.7e-15 Score=166.90 Aligned_cols=203 Identities=24% Similarity=0.292 Sum_probs=159.9
Q ss_pred hhhhhhhcCCCCCccCChHHHHHHHHHhccCCCCC-cEEECCCCCcHHHHHHHHHHHhhCCCCCC------------CCC
Q 003094 186 NLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNN-PCLIGEPGVGKTAIAEGLAQRIASGDVPD------------TIE 252 (848)
Q Consensus 186 ~l~~~~~~~~ld~iiG~~~~~~~l~~~l~~~~~~~-iLL~GppGtGKT~la~~la~~l~~~~~~~------------~l~ 252 (848)
.|.-++||..|++++|++...+.|...+......| .||.||.|||||++|+.+|+.+++...+. ...
T Consensus 5 ~L~rKyRP~~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~ 84 (515)
T COG2812 5 VLARKYRPKTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINE 84 (515)
T ss_pred HHHHHhCcccHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhc
Confidence 36678999999999999999999999998877666 58999999999999999999999864221 011
Q ss_pred C--ceEEEEeCCcccccccccchHHHHHHHHHHHHH----hCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhc--CC
Q 003094 253 G--KKVITLDMGLLVAGTKYRGEFEERLKKLMEEIK----QSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLA--RG 324 (848)
Q Consensus 253 ~--~~v~~~~~~~l~~~~~~~g~~~~~l~~l~~~~~----~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~--~~ 324 (848)
| ..++++|..+- ..-..++.+.+.+. .+...|++|||+|.|. ....|.|+..+| ..
T Consensus 85 g~~~DviEiDaASn--------~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS--------~~afNALLKTLEEPP~ 148 (515)
T COG2812 85 GSLIDVIEIDAASN--------TGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS--------KQAFNALLKTLEEPPS 148 (515)
T ss_pred CCcccchhhhhhhc--------cChHHHHHHHHHhccCCccccceEEEEecHHhhh--------HHHHHHHhcccccCcc
Confidence 1 22333332211 12244666666664 3456799999999994 447888888888 45
Q ss_pred ceEEEEeeChHHHHhhhhcChhhhcccCCCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCC
Q 003094 325 ELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFL 404 (848)
Q Consensus 325 ~v~vI~atn~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~ 404 (848)
++.+|.+|+.+. .+++.++|||+.+.|...+.++....+..++. ..++.+.++++..+++.+.|-..
T Consensus 149 hV~FIlATTe~~-----Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~----~E~I~~e~~aL~~ia~~a~Gs~R---- 215 (515)
T COG2812 149 HVKFILATTEPQ-----KIPNTILSRCQRFDFKRLDLEEIAKHLAAILD----KEGINIEEDALSLIARAAEGSLR---- 215 (515)
T ss_pred CeEEEEecCCcC-----cCchhhhhccccccccCCCHHHHHHHHHHHHH----hcCCccCHHHHHHHHHHcCCChh----
Confidence 799999999887 79999999999999999999998888888776 57899999999999999988654
Q ss_pred hhhHHHHHHHHhhHH
Q 003094 405 PDKAIDLIDEAGSRV 419 (848)
Q Consensus 405 p~~a~~ll~~a~~~~ 419 (848)
++..+||.+....
T Consensus 216 --DalslLDq~i~~~ 228 (515)
T COG2812 216 --DALSLLDQAIAFG 228 (515)
T ss_pred --hHHHHHHHHHHcc
Confidence 4899999987653
No 179
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.61 E-value=3.8e-15 Score=171.63 Aligned_cols=192 Identities=19% Similarity=0.257 Sum_probs=129.7
Q ss_pred HHHHHHhhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCC----CceEEe-cc
Q 003094 523 LKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSE----EAMIRL-DM 597 (848)
Q Consensus 523 ~~l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~----~~~i~i-~~ 597 (848)
.++++.-+++++||+++++.+.+++...+ ..+.+||+||+|+|||++|+.+|+.+++.. .++..+ .|
T Consensus 8 ~k~rP~~f~divGq~~v~~~L~~~i~~~~--------~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C 79 (527)
T PRK14969 8 RKWRPKSFSELVGQEHVVRALTNALEQQR--------LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSAC 79 (527)
T ss_pred HHhCCCcHHHhcCcHHHHHHHHHHHHcCC--------CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 45666778899999999999998887432 223479999999999999999999986532 122111 11
Q ss_pred cccccccchhcccCCC-CCCcccccccchhHHHHc----CCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeec
Q 003094 598 SEFMERHTVSKLIGSP-PGYVGYTEGGQLTEAVRR----RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDF 672 (848)
Q Consensus 598 ~~~~~~~~~~~l~g~~-~g~~g~~~~~~l~~~~~~----~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~ 672 (848)
..+...... +++... ....+.+..+.+.+.+.. +.+.|+||||+|+++.+.+|.|++.||+- .
T Consensus 80 ~~i~~~~~~-d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEep-----------p 147 (527)
T PRK14969 80 LEIDSGRFV-DLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEP-----------P 147 (527)
T ss_pred HHHhcCCCC-ceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCC-----------C
Confidence 111111000 111100 111222222333333332 34679999999999999999999999982 3
Q ss_pred CCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHHHH
Q 003094 673 KNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIM 752 (848)
Q Consensus 673 ~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~~~ 752 (848)
.+++||++|+... .+.+.+++|| ..+.|.+++.+++.+.+...
T Consensus 148 ~~~~fIL~t~d~~------------------------------------kil~tI~SRc-~~~~f~~l~~~~i~~~L~~i 190 (527)
T PRK14969 148 EHVKFILATTDPQ------------------------------------KIPVTVLSRC-LQFNLKQMPPPLIVSHLQHI 190 (527)
T ss_pred CCEEEEEEeCChh------------------------------------hCchhHHHHH-HHHhcCCCCHHHHHHHHHHH
Confidence 5778888886322 2446789999 99999999999999888777
Q ss_pred HHHHHHHHhcCCCeEeecHHHHHHHHHc
Q 003094 753 LKEVFDRLKTKDIELQVTERFRERVVEE 780 (848)
Q Consensus 753 l~~~~~~~~~~~~~l~i~~~a~~~l~~~ 780 (848)
+.+ .| +.+++++++.|+..
T Consensus 191 l~~-------eg--i~~~~~al~~la~~ 209 (527)
T PRK14969 191 LEQ-------EN--IPFDATALQLLARA 209 (527)
T ss_pred HHH-------cC--CCCCHHHHHHHHHH
Confidence 654 13 45899999999884
No 180
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.61 E-value=1.5e-14 Score=167.16 Aligned_cols=201 Identities=24% Similarity=0.240 Sum_probs=150.2
Q ss_pred hhhhhhhcCCCCCccCChHHHHHHHHHhccCCCCC-cEEECCCCCcHHHHHHHHHHHhhCCCCCC--------------C
Q 003094 186 NLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNN-PCLIGEPGVGKTAIAEGLAQRIASGDVPD--------------T 250 (848)
Q Consensus 186 ~l~~~~~~~~ld~iiG~~~~~~~l~~~l~~~~~~~-iLL~GppGtGKT~la~~la~~l~~~~~~~--------------~ 250 (848)
-|..++||.+|++++|++..++.|...+..+...| +||+||+|+|||++|+.+|+.+.+...+. .
T Consensus 5 ~l~~kyRP~~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~ 84 (563)
T PRK06647 5 GTATKRRPRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDN 84 (563)
T ss_pred HHHHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHc
Confidence 46788999999999999999999999998877776 68999999999999999999997642221 1
Q ss_pred CCCceEEEEeCCcccccccccchHHHHHHHHHHHHH----hCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcC--C
Q 003094 251 IEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIK----QSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR--G 324 (848)
Q Consensus 251 l~~~~v~~~~~~~l~~~~~~~g~~~~~l~~l~~~~~----~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~--~ 324 (848)
.....++.++... .. ....++.+.+.+. .+...|++|||+|.|. ....+.|+..++. .
T Consensus 85 ~~~~dv~~idgas------~~--~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls--------~~a~naLLK~LEepp~ 148 (563)
T PRK06647 85 DNSLDVIEIDGAS------NT--SVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS--------NSAFNALLKTIEEPPP 148 (563)
T ss_pred CCCCCeEEecCcc------cC--CHHHHHHHHHHHHhchhcCCCEEEEEEChhhcC--------HHHHHHHHHhhccCCC
Confidence 1122344443221 00 1123344443333 2456799999999994 3467888888884 5
Q ss_pred ceEEEEeeChHHHHhhhhcChhhhcccCCCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCC
Q 003094 325 ELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFL 404 (848)
Q Consensus 325 ~v~vI~atn~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~ 404 (848)
.+.+|++|+... .+.+++.+||+.++|..++.++..+++...+.+ .++.++++++..++..+.+.
T Consensus 149 ~~vfI~~tte~~-----kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~----egi~id~eAl~lLa~~s~Gd------ 213 (563)
T PRK06647 149 YIVFIFATTEVH-----KLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLE----DQIKYEDEALKWIAYKSTGS------ 213 (563)
T ss_pred CEEEEEecCChH-----HhHHHHHHhceEEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC------
Confidence 678888877654 578899999999999999999998888877663 57889999999999987764
Q ss_pred hhhHHHHHHHHhh
Q 003094 405 PDKAIDLIDEAGS 417 (848)
Q Consensus 405 p~~a~~ll~~a~~ 417 (848)
.+.+..+|+.++.
T Consensus 214 lR~alslLdklis 226 (563)
T PRK06647 214 VRDAYTLFDQVVS 226 (563)
T ss_pred HHHHHHHHHHHHh
Confidence 4458888887654
No 181
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.61 E-value=1.2e-14 Score=161.37 Aligned_cols=199 Identities=22% Similarity=0.321 Sum_probs=134.0
Q ss_pred hhccccChHHHHHHHHHHHHHHH--------ccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEeccccc
Q 003094 529 LHKRVIGQDEAVKAISRAIRRAR--------VGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEF 600 (848)
Q Consensus 529 l~~~vigq~~~~~~l~~~~~~~~--------~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~ 600 (848)
-+.+|.|.+..++.|...+.... .|+.. ..++||+||||||||++|+++|+.+ +.+|+.+.++.+
T Consensus 143 ~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~----pkgvLL~GppGTGKT~LAkalA~~l---~~~fi~i~~s~l 215 (398)
T PTZ00454 143 TYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDP----PRGVLLYGPPGTGKTMLAKAVAHHT---TATFIRVVGSEF 215 (398)
T ss_pred CHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCC----CceEEEECCCCCCHHHHHHHHHHhc---CCCEEEEehHHH
Confidence 36679999999999988886432 23333 2359999999999999999999987 677888877655
Q ss_pred ccccchhcccCCCCCCcccccc--cchhHHHHcCCCeEEEEcCCCcCC-----------hHHHHHH---HhhhcCcEEEc
Q 003094 601 MERHTVSKLIGSPPGYVGYTEG--GQLTEAVRRRPYTVVLFDEIEKAH-----------PDVFNMM---LQILEDGRLTD 664 (848)
Q Consensus 601 ~~~~~~~~l~g~~~g~~g~~~~--~~l~~~~~~~~~~Vl~lDEid~l~-----------~~~~~~L---l~~le~g~~~~ 664 (848)
... |.|..+. ..++..++...++||||||+|.+. ..++..+ +..|+.-.
T Consensus 216 ~~k------------~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~--- 280 (398)
T PTZ00454 216 VQK------------YLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFD--- 280 (398)
T ss_pred HHH------------hcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccC---
Confidence 322 4443222 345666777788999999999762 2344444 44444311
Q ss_pred CCCceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhh--ccCeEEEcCCCCH
Q 003094 665 SKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLN--RLDEMIVFRQLTK 742 (848)
Q Consensus 665 ~~g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~--R~d~~i~f~~l~~ 742 (848)
...++++|++||... .++|+++. |||..|.|++++.
T Consensus 281 ------~~~~v~VI~aTN~~d------------------------------------~LDpAllR~GRfd~~I~~~~P~~ 318 (398)
T PTZ00454 281 ------QTTNVKVIMATNRAD------------------------------------TLDPALLRPGRLDRKIEFPLPDR 318 (398)
T ss_pred ------CCCCEEEEEecCCch------------------------------------hCCHHHcCCCcccEEEEeCCcCH
Confidence 114678999998433 25678775 9999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHHHHHHHHH
Q 003094 743 LEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSM 803 (848)
Q Consensus 743 ~el~~I~~~~l~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~l~~~l 803 (848)
++..+|+..++..+ +..-.++ +..++. ....+...+++..++.....++
T Consensus 319 ~~R~~Il~~~~~~~-------~l~~dvd---~~~la~--~t~g~sgaDI~~l~~eA~~~A~ 367 (398)
T PTZ00454 319 RQKRLIFQTITSKM-------NLSEEVD---LEDFVS--RPEKISAADIAAICQEAGMQAV 367 (398)
T ss_pred HHHHHHHHHHHhcC-------CCCcccC---HHHHHH--HcCCCCHHHHHHHHHHHHHHHH
Confidence 99999998776532 1211222 234444 3445667788777776665444
No 182
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.60 E-value=9.4e-15 Score=165.02 Aligned_cols=190 Identities=18% Similarity=0.293 Sum_probs=134.9
Q ss_pred HHHHHHhhccccChHHHHHH---HHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccc
Q 003094 523 LKMEETLHKRVIGQDEAVKA---ISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSE 599 (848)
Q Consensus 523 ~~l~~~l~~~vigq~~~~~~---l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~ 599 (848)
.++++...++++||++.+.. +.+.+... ...+++|+||||||||++|+.+|+.+ +..++.+++..
T Consensus 4 ~~~RP~~l~d~vGq~~~v~~~~~L~~~i~~~---------~~~~ilL~GppGtGKTtLA~~ia~~~---~~~~~~l~a~~ 71 (413)
T PRK13342 4 ERMRPKTLDEVVGQEHLLGPGKPLRRMIEAG---------RLSSMILWGPPGTGKTTLARIIAGAT---DAPFEALSAVT 71 (413)
T ss_pred hhhCCCCHHHhcCcHHHhCcchHHHHHHHcC---------CCceEEEECCCCCCHHHHHHHHHHHh---CCCEEEEeccc
Confidence 34566667789999999766 66666422 12369999999999999999999987 56777776543
Q ss_pred cccccchhcccCCCCCCcccccccchhHHH----HcCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecCCe
Q 003094 600 FMERHTVSKLIGSPPGYVGYTEGGQLTEAV----RRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNT 675 (848)
Q Consensus 600 ~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~----~~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~ 675 (848)
.. ......+.+.+ ....+.||||||+|.++...++.|+..++++. +
T Consensus 72 ~~-----------------~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~~~-------------i 121 (413)
T PRK13342 72 SG-----------------VKDLREVIEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVEDGT-------------I 121 (413)
T ss_pred cc-----------------HHHHHHHHHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhcCc-------------E
Confidence 21 00111122222 12356899999999999999999999998754 3
Q ss_pred EEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHHHHHHH
Q 003094 676 LLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKE 755 (848)
Q Consensus 676 iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~~~l~~ 755 (848)
++|.+|+... ...+.+++++|| .++.|.+++.+++..++...+..
T Consensus 122 ilI~att~n~----------------------------------~~~l~~aL~SR~-~~~~~~~ls~e~i~~lL~~~l~~ 166 (413)
T PRK13342 122 TLIGATTENP----------------------------------SFEVNPALLSRA-QVFELKPLSEEDIEQLLKRALED 166 (413)
T ss_pred EEEEeCCCCh----------------------------------hhhccHHHhccc-eeeEeCCCCHHHHHHHHHHHHHH
Confidence 4555543111 012568999999 89999999999999999887765
Q ss_pred HHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHHHH
Q 003094 756 VFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRL 798 (848)
Q Consensus 756 ~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~ 798 (848)
.. .+. +.+++++++.|+.. . .++.|.+.+.++..
T Consensus 167 ~~-----~~~-i~i~~~al~~l~~~--s-~Gd~R~aln~Le~~ 200 (413)
T PRK13342 167 KE-----RGL-VELDDEALDALARL--A-NGDARRALNLLELA 200 (413)
T ss_pred hh-----cCC-CCCCHHHHHHHHHh--C-CCCHHHHHHHHHHH
Confidence 32 132 46899999999984 3 45677777777765
No 183
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.60 E-value=3e-14 Score=161.28 Aligned_cols=201 Identities=20% Similarity=0.220 Sum_probs=147.1
Q ss_pred hhhhhhhhcCCCCCccCChHHHHHHHHHhccCCCCC-cEEECCCCCcHHHHHHHHHHHhhCCCCCCC-------------
Q 003094 185 TNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNN-PCLIGEPGVGKTAIAEGLAQRIASGDVPDT------------- 250 (848)
Q Consensus 185 ~~l~~~~~~~~ld~iiG~~~~~~~l~~~l~~~~~~~-iLL~GppGtGKT~la~~la~~l~~~~~~~~------------- 250 (848)
..|++++||.+|++++|++..++.+...+..+...| +||+||||+|||++|+.+|+.+.+......
T Consensus 5 ~~~~~kyRP~~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i 84 (451)
T PRK06305 5 QVSSRKYRPQTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEI 84 (451)
T ss_pred HHHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHH
Confidence 358899999999999999999999999998766655 789999999999999999999875321100
Q ss_pred --CCCceEEEEeCCcccccccccchHHHHHHHHHHHHH----hCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcC-
Q 003094 251 --IEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIK----QSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR- 323 (848)
Q Consensus 251 --l~~~~v~~~~~~~l~~~~~~~g~~~~~l~~l~~~~~----~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~- 323 (848)
.....++.++... ..| ...++.+.+.+. .+...|+||||+|.+. ....+.|+.+++.
T Consensus 85 ~~~~~~d~~~i~g~~------~~g--id~ir~i~~~l~~~~~~~~~kvvIIdead~lt--------~~~~n~LLk~lEep 148 (451)
T PRK06305 85 SSGTSLDVLEIDGAS------HRG--IEDIRQINETVLFTPSKSRYKIYIIDEVHMLT--------KEAFNSLLKTLEEP 148 (451)
T ss_pred hcCCCCceEEeeccc------cCC--HHHHHHHHHHHHhhhhcCCCEEEEEecHHhhC--------HHHHHHHHHHhhcC
Confidence 0112344444221 111 112222222222 2456799999999994 3367888888874
Q ss_pred -CceEEEEeeChHHHHhhhhcChhhhcccCCCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccC
Q 003094 324 -GELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDR 402 (848)
Q Consensus 324 -~~v~vI~atn~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~ 402 (848)
+.+.+|++|+... .+.+.+.+||..++|+.++.++....+...+++ .++.++++++..++..+.+.+
T Consensus 149 ~~~~~~Il~t~~~~-----kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~----eg~~i~~~al~~L~~~s~gdl--- 216 (451)
T PRK06305 149 PQHVKFFLATTEIH-----KIPGTILSRCQKMHLKRIPEETIIDKLALIAKQ----EGIETSREALLPIARAAQGSL--- 216 (451)
T ss_pred CCCceEEEEeCChH-----hcchHHHHhceEEeCCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH---
Confidence 5677888877654 678999999999999999999999888877663 577889999999999887643
Q ss_pred CChhhHHHHHHHHh
Q 003094 403 FLPDKAIDLIDEAG 416 (848)
Q Consensus 403 ~~p~~a~~ll~~a~ 416 (848)
+.+..+++...
T Consensus 217 ---r~a~~~Lekl~ 227 (451)
T PRK06305 217 ---RDAESLYDYVV 227 (451)
T ss_pred ---HHHHHHHHHHH
Confidence 34677776654
No 184
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.60 E-value=1.7e-14 Score=162.95 Aligned_cols=164 Identities=26% Similarity=0.389 Sum_probs=112.0
Q ss_pred ccccChHHHHHHHHHHHHHH--------HccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCC-------CCceEEe
Q 003094 531 KRVIGQDEAVKAISRAIRRA--------RVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGS-------EEAMIRL 595 (848)
Q Consensus 531 ~~vigq~~~~~~l~~~~~~~--------~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~-------~~~~i~i 595 (848)
++|.|++..++.+...+... ..++..| .++|||||||||||++|+++|+.+... ...|+.+
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p----~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v 257 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPP----KGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNI 257 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCC----cceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEec
Confidence 44667788887777776532 2344433 359999999999999999999987321 1123333
Q ss_pred cccccccccchhcccCCCCCCcccccc--cchhHHHHc----CCCeEEEEcCCCcCCh------------HHHHHHHhhh
Q 003094 596 DMSEFMERHTVSKLIGSPPGYVGYTEG--GQLTEAVRR----RPYTVVLFDEIEKAHP------------DVFNMMLQIL 657 (848)
Q Consensus 596 ~~~~~~~~~~~~~l~g~~~g~~g~~~~--~~l~~~~~~----~~~~Vl~lDEid~l~~------------~~~~~Ll~~l 657 (848)
..+++ ++ .|+|..+. ..+++.++. ..++||||||+|.+.. .+++.|+..|
T Consensus 258 ~~~eL---------l~---kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~L 325 (512)
T TIGR03689 258 KGPEL---------LN---KYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSEL 325 (512)
T ss_pred cchhh---------cc---cccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHh
Confidence 32222 22 25555443 344555443 3578999999998732 2567888888
Q ss_pred cCcEEEcCCCceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhh--ccCeEE
Q 003094 658 EDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLN--RLDEMI 735 (848)
Q Consensus 658 e~g~~~~~~g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~--R~d~~i 735 (848)
+.-. ...++++|+|||... .++|++++ |||..|
T Consensus 326 Dgl~---------~~~~ViVI~ATN~~d------------------------------------~LDpALlRpGRfD~~I 360 (512)
T TIGR03689 326 DGVE---------SLDNVIVIGASNRED------------------------------------MIDPAILRPGRLDVKI 360 (512)
T ss_pred cccc---------cCCceEEEeccCChh------------------------------------hCCHhhcCccccceEE
Confidence 7522 124789999998433 36789986 999999
Q ss_pred EcCCCCHHHHHHHHHHHHHH
Q 003094 736 VFRQLTKLEVKEIADIMLKE 755 (848)
Q Consensus 736 ~f~~l~~~el~~I~~~~l~~ 755 (848)
.|++++.++..+|+...+..
T Consensus 361 ~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 361 RIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred EeCCCCHHHHHHHHHHHhhc
Confidence 99999999999999888753
No 185
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=2.2e-14 Score=163.26 Aligned_cols=201 Identities=22% Similarity=0.273 Sum_probs=149.1
Q ss_pred hhhhhhhcCCCCCccCChHHHHHHHHHhccCCCCCc-EEECCCCCcHHHHHHHHHHHhhCCCCCC--------------C
Q 003094 186 NLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNP-CLIGEPGVGKTAIAEGLAQRIASGDVPD--------------T 250 (848)
Q Consensus 186 ~l~~~~~~~~ld~iiG~~~~~~~l~~~l~~~~~~~i-LL~GppGtGKT~la~~la~~l~~~~~~~--------------~ 250 (848)
+|..++||..|++++|++..++.|...+......|. ||+||+|+|||++|+.+|+.+.+..... .
T Consensus 5 ~~~~kyRP~~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~ 84 (486)
T PRK14953 5 PFARKYRPKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDK 84 (486)
T ss_pred HHHHhhCCCcHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhc
Confidence 688999999999999999999999999988777775 7899999999999999999987521111 0
Q ss_pred CCCceEEEEeCCcccccccccchHHHHHHHHHHHHH----hCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcC--C
Q 003094 251 IEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIK----QSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR--G 324 (848)
Q Consensus 251 l~~~~v~~~~~~~l~~~~~~~g~~~~~l~~l~~~~~----~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~--~ 324 (848)
.....+++++.+.- .| ...++.+.+.+. .+...|++|||+|.+. ....+.|+..++. .
T Consensus 85 g~~~d~~eidaas~------~g--vd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt--------~~a~naLLk~LEepp~ 148 (486)
T PRK14953 85 GSFPDLIEIDAASN------RG--IDDIRALRDAVSYTPIKGKYKVYIIDEAHMLT--------KEAFNALLKTLEEPPP 148 (486)
T ss_pred CCCCcEEEEeCccC------CC--HHHHHHHHHHHHhCcccCCeeEEEEEChhhcC--------HHHHHHHHHHHhcCCC
Confidence 11123555543211 11 122344444443 2345799999999984 3367788888874 3
Q ss_pred ceEEEEeeChHHHHhhhhcChhhhcccCCCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCC
Q 003094 325 ELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFL 404 (848)
Q Consensus 325 ~v~vI~atn~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~ 404 (848)
.+++|.+|+... .+.+++.+||..+.|++|+.++...++..++++ .++.++++++..++..+.+.
T Consensus 149 ~~v~Il~tt~~~-----kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~----egi~id~~al~~La~~s~G~------ 213 (486)
T PRK14953 149 RTIFILCTTEYD-----KIPPTILSRCQRFIFSKPTKEQIKEYLKRICNE----EKIEYEEKALDLLAQASEGG------ 213 (486)
T ss_pred CeEEEEEECCHH-----HHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC------
Confidence 566666676554 467899999999999999999999999888774 46788999999999887764
Q ss_pred hhhHHHHHHHHhh
Q 003094 405 PDKAIDLIDEAGS 417 (848)
Q Consensus 405 p~~a~~ll~~a~~ 417 (848)
.+.+..+|+.++.
T Consensus 214 lr~al~~Ldkl~~ 226 (486)
T PRK14953 214 MRDAASLLDQAST 226 (486)
T ss_pred HHHHHHHHHHHHH
Confidence 4458888887753
No 186
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.60 E-value=4e-14 Score=150.00 Aligned_cols=156 Identities=13% Similarity=0.148 Sum_probs=110.1
Q ss_pred ceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhcccCCCCCCcccccc--cchhHHHH-----cCC
Q 003094 561 IASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEG--GQLTEAVR-----RRP 633 (848)
Q Consensus 561 ~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~~g~~~~--~~l~~~~~-----~~~ 633 (848)
...++||||||||||.+|+++|+.+ +.+++.++.+++... |+|+++. +.++..++ +..
T Consensus 148 PlgllL~GPPGcGKTllAraiA~el---g~~~i~vsa~eL~sk------------~vGEsEk~IR~~F~~A~~~a~~~~a 212 (413)
T PLN00020 148 PLILGIWGGKGQGKSFQCELVFKKM---GIEPIVMSAGELESE------------NAGEPGKLIRQRYREAADIIKKKGK 212 (413)
T ss_pred CeEEEeeCCCCCCHHHHHHHHHHHc---CCCeEEEEHHHhhcC------------cCCcHHHHHHHHHHHHHHHhhccCC
Confidence 3458999999999999999999998 788999999888543 8888765 44555443 346
Q ss_pred CeEEEEcCCCcCChH------------HHHHHHhhhcCcEEEcCCC---ceeecCCeEEEEecCCCchhhhccCcccccc
Q 003094 634 YTVVLFDEIEKAHPD------------VFNMMLQILEDGRLTDSKG---RTVDFKNTLLIMTSNVGSSVIEKGGRRIGFD 698 (848)
Q Consensus 634 ~~Vl~lDEid~l~~~------------~~~~Ll~~le~g~~~~~~g---~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~ 698 (848)
+|||||||||.+-+. +...|+.+||+-......| ..-...++.||+|||..+.
T Consensus 213 PcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~------------ 280 (413)
T PLN00020 213 MSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFST------------ 280 (413)
T ss_pred CeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCccc------------
Confidence 899999999977431 2367888887511000001 0012357889999995553
Q ss_pred cCCCcccccHHHHHHHHHHHHHhhcChhhhh--ccCeEEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCeEeecHHHHHH
Q 003094 699 LDYDEKDSSYNRIKSLVTEELKQYFRPEFLN--RLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRER 776 (848)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~--R~d~~i~f~~l~~~el~~I~~~~l~~~~~~~~~~~~~l~i~~~a~~~ 776 (848)
++|+|+. |||..++ .++.++..+|++.+++. ..++..-+..
T Consensus 281 ------------------------LDpALlRpGRfDk~i~--lPd~e~R~eIL~~~~r~-----------~~l~~~dv~~ 323 (413)
T PLN00020 281 ------------------------LYAPLIRDGRMEKFYW--APTREDRIGVVHGIFRD-----------DGVSREDVVK 323 (413)
T ss_pred ------------------------CCHhHcCCCCCCceeC--CCCHHHHHHHHHHHhcc-----------CCCCHHHHHH
Confidence 6789987 9998653 68999999999877754 1245566666
Q ss_pred HHHc
Q 003094 777 VVEE 780 (848)
Q Consensus 777 l~~~ 780 (848)
|++.
T Consensus 324 Lv~~ 327 (413)
T PLN00020 324 LVDT 327 (413)
T ss_pred HHHc
Confidence 6663
No 187
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.60 E-value=5.6e-14 Score=148.75 Aligned_cols=149 Identities=26% Similarity=0.313 Sum_probs=107.5
Q ss_pred EEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhcccCCCCCCcccc--------------------cc
Q 003094 563 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYT--------------------EG 622 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~~g~~--------------------~~ 622 (848)
++||+||||||||++|+.+|+.+ +.+++.++|..- ...+.++|...+|.... ..
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~l---g~~~~~i~~~~~---~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARKR---DRPVMLINGDAE---LTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVD 96 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh---CCCEEEEeCCcc---CCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecC
Confidence 48999999999999999999976 788999998763 23345566532221110 01
Q ss_pred cchhHHHHcCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCc----ee-ecCCeEEEEecCCCchhhhccCccccc
Q 003094 623 GQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGR----TV-DFKNTLLIMTSNVGSSVIEKGGRRIGF 697 (848)
Q Consensus 623 ~~l~~~~~~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~----~v-~~~~~iiI~tsN~~~~~i~~~~~~~~f 697 (848)
+.+..+++ .+++|+|||++++++++++.|+.+|+++.++..++. .+ ..+++++|+|+|.....
T Consensus 97 g~l~~A~~--~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~---------- 164 (262)
T TIGR02640 97 NRLTLAVR--EGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYA---------- 164 (262)
T ss_pred chHHHHHH--cCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCcccc----------
Confidence 33444444 346999999999999999999999999988765432 22 34688999999953210
Q ss_pred ccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHHH
Q 003094 698 DLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADI 751 (848)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~~ 751 (848)
....++++|++|| ..+.+..++.++..+|+..
T Consensus 165 ---------------------g~~~l~~aL~~R~-~~i~i~~P~~~~e~~Il~~ 196 (262)
T TIGR02640 165 ---------------------GVHETQDALLDRL-ITIFMDYPDIDTETAILRA 196 (262)
T ss_pred ---------------------ceecccHHHHhhc-EEEECCCCCHHHHHHHHHH
Confidence 0011468899999 7889999999888888864
No 188
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=2.3e-14 Score=160.74 Aligned_cols=201 Identities=19% Similarity=0.190 Sum_probs=146.9
Q ss_pred hhhhhhhcCCCCCccCChHHHHHHHHHhccCCCCC-cEEECCCCCcHHHHHHHHHHHhhCCCCCC---------------
Q 003094 186 NLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNN-PCLIGEPGVGKTAIAEGLAQRIASGDVPD--------------- 249 (848)
Q Consensus 186 ~l~~~~~~~~ld~iiG~~~~~~~l~~~l~~~~~~~-iLL~GppGtGKT~la~~la~~l~~~~~~~--------------- 249 (848)
-|++++||.+|++++|++..++.|...+......| +||+||||+|||++|+.+|+.+.+.....
T Consensus 5 ~l~~k~RP~~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c 84 (397)
T PRK14955 5 VIARKYRPKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGEC 84 (397)
T ss_pred HHHHhcCCCcHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCC
Confidence 47889999999999999999999999998877777 78999999999999999999997632110
Q ss_pred -------CCCCceEEEEeCCcccccccccchHHHHHHHHHHHHH----hCCCeEEEEcccchhhhCCCCCchHHHHHHHh
Q 003094 250 -------TIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIK----QSDEIILFIDEVHTLIGAGAAEGAIDAANILK 318 (848)
Q Consensus 250 -------~l~~~~v~~~~~~~l~~~~~~~g~~~~~l~~l~~~~~----~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~ 318 (848)
...+..++.++.... . ....++.+.+.+. .+...|+||||+|.+.. ..++.|.
T Consensus 85 ~~c~~~~~~~~~n~~~~~~~~~------~--~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~--------~~~~~LL 148 (397)
T PRK14955 85 ESCRDFDAGTSLNISEFDAASN------N--SVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSI--------AAFNAFL 148 (397)
T ss_pred HHHHHHhcCCCCCeEeeccccc------C--CHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCH--------HHHHHHH
Confidence 001123333432111 1 1233445555542 23456999999999943 3567778
Q ss_pred hhhcC--CceEEEEeeChHHHHhhhhcChhhhcccCCCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhh
Q 003094 319 PSLAR--GELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSY 396 (848)
Q Consensus 319 ~~l~~--~~v~vI~atn~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~ 396 (848)
..++. +..++|.+|+... .+.+.+.+|+..++|++++.++..+.+...++ ..++.++++++..++..+.
T Consensus 149 k~LEep~~~t~~Il~t~~~~-----kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~----~~g~~i~~~al~~l~~~s~ 219 (397)
T PRK14955 149 KTLEEPPPHAIFIFATTELH-----KIPATIASRCQRFNFKRIPLEEIQQQLQGICE----AEGISVDADALQLIGRKAQ 219 (397)
T ss_pred HHHhcCCCCeEEEEEeCChH-----HhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHcC
Confidence 88874 4567777776543 57789999999999999999999888887776 3577899999999999987
Q ss_pred cccccCCChhhHHHHHHHHhh
Q 003094 397 QYISDRFLPDKAIDLIDEAGS 417 (848)
Q Consensus 397 ~~~~~~~~p~~a~~ll~~a~~ 417 (848)
+.+ +.+...++....
T Consensus 220 g~l------r~a~~~L~kl~~ 234 (397)
T PRK14955 220 GSM------RDAQSILDQVIA 234 (397)
T ss_pred CCH------HHHHHHHHHHHH
Confidence 653 347777766543
No 189
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.59 E-value=1.8e-13 Score=160.66 Aligned_cols=217 Identities=20% Similarity=0.281 Sum_probs=139.9
Q ss_pred HHHHhhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhc-------CCCCceEEecc
Q 003094 525 MEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYF-------GSEEAMIRLDM 597 (848)
Q Consensus 525 l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~-------~~~~~~i~i~~ 597 (848)
+++.-+++++||+.++..+.+.+... . ..+++|+||||||||++|+++++... ..+.+|+.+||
T Consensus 148 ~rp~~~~~iiGqs~~~~~l~~~ia~~--------~-~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~ 218 (615)
T TIGR02903 148 LRPRAFSEIVGQERAIKALLAKVASP--------F-PQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDG 218 (615)
T ss_pred cCcCcHHhceeCcHHHHHHHHHHhcC--------C-CCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEec
Confidence 44556778999999999876554211 1 13599999999999999999998762 13568999999
Q ss_pred cccccc--cchhcccCCCCC--Ccccc-------cccchhHHHHcCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCC
Q 003094 598 SEFMER--HTVSKLIGSPPG--YVGYT-------EGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSK 666 (848)
Q Consensus 598 ~~~~~~--~~~~~l~g~~~g--~~g~~-------~~~~l~~~~~~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~ 666 (848)
..+... .....++|.... +.+.. ......+.+....+++|||||++.+++..|+.|+++|+++.+....
T Consensus 219 ~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~ 298 (615)
T TIGR02903 219 TTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSS 298 (615)
T ss_pred hhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeec
Confidence 876311 011123332110 00000 0001122344566789999999999999999999999998754221
Q ss_pred Cc------e-----------eecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhh
Q 003094 667 GR------T-----------VDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLN 729 (848)
Q Consensus 667 g~------~-----------v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~ 729 (848)
+. . ....++++|.+|+.... .++++|++
T Consensus 299 ~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~-----------------------------------~l~~aLrS 343 (615)
T TIGR02903 299 SYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPE-----------------------------------EINPALRS 343 (615)
T ss_pred ceeccCCcccchhhhhhcccCccceEEEEEecccccc-----------------------------------ccCHHHHh
Confidence 10 0 01224566655542111 24688999
Q ss_pred ccCeEEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHHHHH
Q 003094 730 RLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLL 799 (848)
Q Consensus 730 R~d~~i~f~~l~~~el~~I~~~~l~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~l 799 (848)
|| ..+.|+|++.+|+..|+...+.+. + +.+++++++.|.. |.|+ +|..-+.+...+
T Consensus 344 R~-~~i~~~pls~edi~~Il~~~a~~~-------~--v~ls~eal~~L~~--ys~~--gRraln~L~~~~ 399 (615)
T TIGR02903 344 RC-AEVFFEPLTPEDIALIVLNAAEKI-------N--VHLAAGVEELIAR--YTIE--GRKAVNILADVY 399 (615)
T ss_pred ce-eEEEeCCCCHHHHHHHHHHHHHHc-------C--CCCCHHHHHHHHH--CCCc--HHHHHHHHHHHH
Confidence 99 678999999999999999877642 2 3478999999999 5553 243434454443
No 190
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.59 E-value=6.5e-15 Score=139.08 Aligned_cols=120 Identities=32% Similarity=0.499 Sum_probs=98.5
Q ss_pred cEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccccccccchHHHHHHHHHHHHHhCC-CeEEEEcccc
Q 003094 221 PCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSD-EIILFIDEVH 299 (848)
Q Consensus 221 iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~~~~g~~~~~l~~l~~~~~~~~-~~IL~IDEid 299 (848)
+||+||||||||++++.+|+.+ +.+++.+++..+. ..+.++.+..+..++..+.... ++||||||+|
T Consensus 1 ill~G~~G~GKT~l~~~la~~l----------~~~~~~i~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d 68 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL----------GFPFIEIDGSELI--SSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEID 68 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT----------TSEEEEEETTHHH--TSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGG
T ss_pred CEEECcCCCCeeHHHHHHHhhc----------ccccccccccccc--cccccccccccccccccccccccceeeeeccch
Confidence 6899999999999999999998 6789999999887 4477889999999999998887 9999999999
Q ss_pred hhhhCCCCC---chHHHHHHHhhhhc-----CCceEEEEeeChHHHHhhhhcChhhh-cccC-CCcCC
Q 003094 300 TLIGAGAAE---GAIDAANILKPSLA-----RGELQCIGATTLDEYRKHIEKDPALE-RRFQ-PVKVP 357 (848)
Q Consensus 300 ~l~~~~~~~---~~~~~~~~L~~~l~-----~~~v~vI~atn~~~~~~~~~~d~al~-~Rf~-~i~~~ 357 (848)
.+.+..... ......+.|...++ ..++.+|++||..+ .+++++. +||+ .+++|
T Consensus 69 ~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~-----~i~~~l~~~rf~~~i~~~ 131 (132)
T PF00004_consen 69 KLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPD-----KIDPALLRSRFDRRIEFP 131 (132)
T ss_dssp GTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGG-----GSCHHHHSTTSEEEEEE-
T ss_pred hcccccccccccccccccceeeecccccccccccceeEEeeCChh-----hCCHhHHhCCCcEEEEcC
Confidence 999776211 23345666666654 24699999999977 7999999 9997 66665
No 191
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.59 E-value=1.7e-14 Score=166.80 Aligned_cols=166 Identities=23% Similarity=0.326 Sum_probs=117.4
Q ss_pred hccccChHHHHHHHHHHHHHHHcc---CCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccch
Q 003094 530 HKRVIGQDEAVKAISRAIRRARVG---LKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTV 606 (848)
Q Consensus 530 ~~~vigq~~~~~~l~~~~~~~~~~---~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~ 606 (848)
+++|+|++++++.+.+.+...+.. ......+..++||+||||||||++|+++|..+ +.+++.++++++...
T Consensus 54 ~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~~~~--- 127 (495)
T TIGR01241 54 FKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA---GVPFFSISGSDFVEM--- 127 (495)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc---CCCeeeccHHHHHHH---
Confidence 456888888888777766532210 00011222359999999999999999999987 788998888776432
Q ss_pred hcccCCCCCCccccc--ccchhHHHHcCCCeEEEEcCCCcCCh--------------HHHHHHHhhhcCcEEEcCCCcee
Q 003094 607 SKLIGSPPGYVGYTE--GGQLTEAVRRRPYTVVLFDEIEKAHP--------------DVFNMMLQILEDGRLTDSKGRTV 670 (848)
Q Consensus 607 ~~l~g~~~g~~g~~~--~~~l~~~~~~~~~~Vl~lDEid~l~~--------------~~~~~Ll~~le~g~~~~~~g~~v 670 (848)
|+|..+ ...++..++...++||||||||.+.+ .+++.|+..|+...
T Consensus 128 ---------~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~--------- 189 (495)
T TIGR01241 128 ---------FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFG--------- 189 (495)
T ss_pred ---------HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhcccc---------
Confidence 233222 24456666777789999999998732 36667777776421
Q ss_pred ecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhh--ccCeEEEcCCCCHHHHHHH
Q 003094 671 DFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLN--RLDEMIVFRQLTKLEVKEI 748 (848)
Q Consensus 671 ~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~--R~d~~i~f~~l~~~el~~I 748 (848)
...+++||+|||... .++|++++ |||..|.+++++.++..+|
T Consensus 190 ~~~~v~vI~aTn~~~------------------------------------~ld~al~r~gRfd~~i~i~~Pd~~~R~~i 233 (495)
T TIGR01241 190 TNTGVIVIAATNRPD------------------------------------VLDPALLRPGRFDRQVVVDLPDIKGREEI 233 (495)
T ss_pred CCCCeEEEEecCChh------------------------------------hcCHHHhcCCcceEEEEcCCCCHHHHHHH
Confidence 114578999998433 25677874 9999999999999999999
Q ss_pred HHHHHHH
Q 003094 749 ADIMLKE 755 (848)
Q Consensus 749 ~~~~l~~ 755 (848)
++..+..
T Consensus 234 l~~~l~~ 240 (495)
T TIGR01241 234 LKVHAKN 240 (495)
T ss_pred HHHHHhc
Confidence 9887754
No 192
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.59 E-value=1.2e-14 Score=175.97 Aligned_cols=187 Identities=22% Similarity=0.328 Sum_probs=132.1
Q ss_pred CccCChHHHHHHHHHhcc------CCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccc-----
Q 003094 198 PVVGRQPQIERVVQILGR------RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVA----- 266 (848)
Q Consensus 198 ~iiG~~~~~~~l~~~l~~------~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~----- 266 (848)
+++|+++.++++.+.+.. ....++||+||||||||++|+++|+.+ +.+++.++++....
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l----------~~~~~~i~~~~~~~~~~i~ 390 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL----------NRKFVRFSLGGVRDEAEIR 390 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh----------cCCeEEEeCCCcccHHHHc
Confidence 589999999998886542 234568999999999999999999998 45677776654321
Q ss_pred --cccccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhc-----------------CCceE
Q 003094 267 --GTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLA-----------------RGELQ 327 (848)
Q Consensus 267 --~~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~-----------------~~~v~ 327 (848)
...|.|.....+...+..+....| |+||||+|.+.+...+ +..+.|+.+++ .++++
T Consensus 391 g~~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~----~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~ 465 (775)
T TIGR00763 391 GHRRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRG----DPASALLEVLDPEQNNAFSDHYLDVPFDLSKVI 465 (775)
T ss_pred CCCCceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCC----CHHHHHHHhcCHHhcCccccccCCceeccCCEE
Confidence 124556555666666666655555 7899999999753221 12334444433 14688
Q ss_pred EEEeeChHHHHhhhhcChhhhcccCCCcCCCCCHHHHHHHHHHHHH-HHhhhh-----cCCCChHHHHHHHhhhhccccc
Q 003094 328 CIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRE-RYEIHH-----KLRYTDEALVSAAQLSYQYISD 401 (848)
Q Consensus 328 vI~atn~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~Il~~~~~-~~~~~~-----~~~~s~~~l~~l~~~s~~~~~~ 401 (848)
+|+|||..+ .++++|++||..|+|+.|+.+++.+|++.++. +....+ .+.++++++..+++...+..+.
T Consensus 466 ~I~TtN~~~-----~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g~ 540 (775)
T TIGR00763 466 FIATANSID-----TIPRPLLDRMEVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREAGV 540 (775)
T ss_pred EEEecCCch-----hCCHHHhCCeeEEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhcCC
Confidence 999999876 68999999999999999999999999987652 222222 4578999999888744444444
Q ss_pred CCC
Q 003094 402 RFL 404 (848)
Q Consensus 402 ~~~ 404 (848)
|.+
T Consensus 541 R~l 543 (775)
T TIGR00763 541 RNL 543 (775)
T ss_pred hHH
Confidence 333
No 193
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.59 E-value=7.7e-15 Score=167.36 Aligned_cols=193 Identities=20% Similarity=0.313 Sum_probs=131.1
Q ss_pred HHHHHHHhhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCce--EEeccc-
Q 003094 522 LLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAM--IRLDMS- 598 (848)
Q Consensus 522 l~~l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~--i~i~~~- 598 (848)
..++++..+++++||+.+++.+.+++... +..+.+||+||+|+|||++|+++|+.+.+.+..- .+-.|.
T Consensus 7 ~~KyRP~~F~dIIGQe~iv~~L~~aI~~~--------rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~s 78 (605)
T PRK05896 7 YRKYRPHNFKQIIGQELIKKILVNAILNN--------KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSV 78 (605)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHcC--------CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHH
Confidence 45677788899999999999988887532 1124599999999999999999999987533111 111111
Q ss_pred --ccccccchhcccC-CCCCCcccccccchhHHHHc----CCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceee
Q 003094 599 --EFMERHTVSKLIG-SPPGYVGYTEGGQLTEAVRR----RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVD 671 (848)
Q Consensus 599 --~~~~~~~~~~l~g-~~~g~~g~~~~~~l~~~~~~----~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~ 671 (848)
.+....... ++- ...+..|..+.+.+.+.+.. +++.|++|||+|.++.+.++.|++.||+.
T Consensus 79 Cr~i~~~~h~D-iieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEP----------- 146 (605)
T PRK05896 79 CESINTNQSVD-IVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEP----------- 146 (605)
T ss_pred HHHHHcCCCCc-eEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhC-----------
Confidence 111110000 100 00111222222333333333 34679999999999999999999999982
Q ss_pred cCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHHH
Q 003094 672 FKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADI 751 (848)
Q Consensus 672 ~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~~ 751 (848)
+.+++||++|+... .+.+.+++|| ..+.|.+++.+++...+..
T Consensus 147 p~~tvfIL~Tt~~~------------------------------------KLl~TI~SRc-q~ieF~~Ls~~eL~~~L~~ 189 (605)
T PRK05896 147 PKHVVFIFATTEFQ------------------------------------KIPLTIISRC-QRYNFKKLNNSELQELLKS 189 (605)
T ss_pred CCcEEEEEECCChH------------------------------------hhhHHHHhhh-hhcccCCCCHHHHHHHHHH
Confidence 35778888885221 2457899999 7899999999999998877
Q ss_pred HHHHHHHHHhcCCCeEeecHHHHHHHHHc
Q 003094 752 MLKEVFDRLKTKDIELQVTERFRERVVEE 780 (848)
Q Consensus 752 ~l~~~~~~~~~~~~~l~i~~~a~~~l~~~ 780 (848)
.+.+ ..+.+++++++.|+..
T Consensus 190 il~k---------egi~Is~eal~~La~l 209 (605)
T PRK05896 190 IAKK---------EKIKIEDNAIDKIADL 209 (605)
T ss_pred HHHH---------cCCCCCHHHHHHHHHH
Confidence 7754 2245889999998884
No 194
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.59 E-value=1.8e-14 Score=170.35 Aligned_cols=198 Identities=18% Similarity=0.284 Sum_probs=135.3
Q ss_pred HHHHHhhccccChHHHHH---HHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEeccccc
Q 003094 524 KMEETLHKRVIGQDEAVK---AISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEF 600 (848)
Q Consensus 524 ~l~~~l~~~vigq~~~~~---~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~ 600 (848)
++++.-.++++||++.+. .+.+.+.. ....+++|+||||||||++|+++|+.+ ..+++.+|+...
T Consensus 21 k~RP~tldd~vGQe~ii~~~~~L~~~i~~---------~~~~slLL~GPpGtGKTTLA~aIA~~~---~~~f~~lna~~~ 88 (725)
T PRK13341 21 RLRPRTLEEFVGQDHILGEGRLLRRAIKA---------DRVGSLILYGPPGVGKTTLARIIANHT---RAHFSSLNAVLA 88 (725)
T ss_pred hcCCCcHHHhcCcHHHhhhhHHHHHHHhc---------CCCceEEEECCCCCCHHHHHHHHHHHh---cCcceeehhhhh
Confidence 455556678999999985 34444432 123469999999999999999999986 566776665421
Q ss_pred ccccchhcccCCCCCCcccccccchhHHHH-cCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecCCeEEEE
Q 003094 601 MERHTVSKLIGSPPGYVGYTEGGQLTEAVR-RRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIM 679 (848)
Q Consensus 601 ~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~-~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~ 679 (848)
... .+...+ ......+. ...+.+|||||||.++...++.|+..++++. +++|.
T Consensus 89 ~i~-dir~~i------------~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~g~-------------IiLI~ 142 (725)
T PRK13341 89 GVK-DLRAEV------------DRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVENGT-------------ITLIG 142 (725)
T ss_pred hhH-HHHHHH------------HHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhcCce-------------EEEEE
Confidence 100 000000 00111111 1345799999999999999999999998855 34555
Q ss_pred ecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHHHHHHHHHHH
Q 003094 680 TSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDR 759 (848)
Q Consensus 680 tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~~~l~~~~~~ 759 (848)
+|+.... ..+.+++++|+ .++.|+||+.+++..++...+.+....
T Consensus 143 aTTenp~----------------------------------~~l~~aL~SR~-~v~~l~pLs~edi~~IL~~~l~~~~~~ 187 (725)
T PRK13341 143 ATTENPY----------------------------------FEVNKALVSRS-RLFRLKSLSDEDLHQLLKRALQDKERG 187 (725)
T ss_pred ecCCChH----------------------------------hhhhhHhhccc-cceecCCCCHHHHHHHHHHHHHHHHhh
Confidence 5431100 02457899998 789999999999999999988765443
Q ss_pred HhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHHHHH
Q 003094 760 LKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLL 799 (848)
Q Consensus 760 ~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~l 799 (848)
+.. ..+.++++++++|+.. . ++++|.+.+.++.++
T Consensus 188 ~g~--~~v~I~deaL~~La~~--s-~GD~R~lln~Le~a~ 222 (725)
T PRK13341 188 YGD--RKVDLEPEAEKHLVDV--A-NGDARSLLNALELAV 222 (725)
T ss_pred cCC--cccCCCHHHHHHHHHh--C-CCCHHHHHHHHHHHH
Confidence 322 3456999999999994 3 567888888887655
No 195
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=1.2e-14 Score=165.49 Aligned_cols=207 Identities=23% Similarity=0.317 Sum_probs=136.9
Q ss_pred HHHHHHhhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCC----CceE-Eecc
Q 003094 523 LKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSE----EAMI-RLDM 597 (848)
Q Consensus 523 ~~l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~----~~~i-~i~~ 597 (848)
.++++..+.+++||+.++..+.+++...+ ..+.+||+||+|+|||++|+.+|+.+++.+ .++. +.+|
T Consensus 8 ~kyRP~~f~diiGq~~i~~~L~~~i~~~~--------i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc 79 (486)
T PRK14953 8 RKYRPKFFKEVIGQEIVVRILKNAVKLQR--------VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENC 79 (486)
T ss_pred HhhCCCcHHHccChHHHHHHHHHHHHcCC--------CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHH
Confidence 45666778899999999999988886432 223489999999999999999999986421 1221 1233
Q ss_pred cccccccchhcccCCCCCCcccccccchhHHHHc----CCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecC
Q 003094 598 SEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRR----RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFK 673 (848)
Q Consensus 598 ~~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~----~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~ 673 (848)
..+........+.-......|.+..+.+.+.+.. +.+.|++|||+|+++...+|.|++.|++. +.
T Consensus 80 ~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEep-----------p~ 148 (486)
T PRK14953 80 VEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEP-----------PP 148 (486)
T ss_pred HHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcC-----------CC
Confidence 3322211111110011112233223344444443 34679999999999999999999999872 25
Q ss_pred CeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHHHHH
Q 003094 674 NTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIML 753 (848)
Q Consensus 674 ~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~~~l 753 (848)
+++||++|+... .+.+.+.+|| ..+.|.|++.+++..++...+
T Consensus 149 ~~v~Il~tt~~~------------------------------------kl~~tI~SRc-~~i~f~~ls~~el~~~L~~i~ 191 (486)
T PRK14953 149 RTIFILCTTEYD------------------------------------KIPPTILSRC-QRFIFSKPTKEQIKEYLKRIC 191 (486)
T ss_pred CeEEEEEECCHH------------------------------------HHHHHHHHhc-eEEEcCCCCHHHHHHHHHHHH
Confidence 678888775211 1346788999 789999999999999887776
Q ss_pred HHHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHHH
Q 003094 754 KEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMR 797 (848)
Q Consensus 754 ~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~ 797 (848)
.. .| +.+++++++.|+...- ++.|.+.+.+++
T Consensus 192 k~-------eg--i~id~~al~~La~~s~---G~lr~al~~Ldk 223 (486)
T PRK14953 192 NE-------EK--IEYEEKALDLLAQASE---GGMRDAASLLDQ 223 (486)
T ss_pred HH-------cC--CCCCHHHHHHHHHHcC---CCHHHHHHHHHH
Confidence 54 13 4689999999988311 334544444443
No 196
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.58 E-value=1e-14 Score=165.19 Aligned_cols=191 Identities=18% Similarity=0.299 Sum_probs=131.3
Q ss_pred HHHHHHhhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCC-----ce-EEec
Q 003094 523 LKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEE-----AM-IRLD 596 (848)
Q Consensus 523 ~~l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~-----~~-i~i~ 596 (848)
.++++.-+++|+||+.++..+.+.+... +....+||+||+|+|||++|+.+|+.+++... ++ .+.+
T Consensus 9 ~kyRP~~~~diiGq~~~v~~L~~~i~~~--------~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~ 80 (451)
T PRK06305 9 RKYRPQTFSEILGQDAVVAVLKNALRFN--------RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCAS 80 (451)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHcC--------CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHH
Confidence 4566777889999999999988888643 22245899999999999999999999876421 11 1122
Q ss_pred ccccccccc--hhcccCCCCCCcccccccchhHHHH----cCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCcee
Q 003094 597 MSEFMERHT--VSKLIGSPPGYVGYTEGGQLTEAVR----RRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTV 670 (848)
Q Consensus 597 ~~~~~~~~~--~~~l~g~~~g~~g~~~~~~l~~~~~----~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v 670 (848)
|..+..... ...+-|. ...|.++.+.+.+.+. .+.+.||||||+|.++...++.|+++||+.
T Consensus 81 C~~i~~~~~~d~~~i~g~--~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep---------- 148 (451)
T PRK06305 81 CKEISSGTSLDVLEIDGA--SHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEP---------- 148 (451)
T ss_pred HHHHhcCCCCceEEeecc--ccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcC----------
Confidence 333221111 1112121 1222222222333222 256789999999999999999999999982
Q ss_pred ecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHH
Q 003094 671 DFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIAD 750 (848)
Q Consensus 671 ~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~ 750 (848)
..+++||+++|... .+.+.+.+|| ..+.|.+++.+++...+.
T Consensus 149 -~~~~~~Il~t~~~~------------------------------------kl~~tI~sRc-~~v~f~~l~~~el~~~L~ 190 (451)
T PRK06305 149 -PQHVKFFLATTEIH------------------------------------KIPGTILSRC-QKMHLKRIPEETIIDKLA 190 (451)
T ss_pred -CCCceEEEEeCChH------------------------------------hcchHHHHhc-eEEeCCCCCHHHHHHHHH
Confidence 24678888875221 2457899999 899999999999998887
Q ss_pred HHHHHHHHHHhcCCCeEeecHHHHHHHHHc
Q 003094 751 IMLKEVFDRLKTKDIELQVTERFRERVVEE 780 (848)
Q Consensus 751 ~~l~~~~~~~~~~~~~l~i~~~a~~~l~~~ 780 (848)
..+.+ ..+.+++++++.|+..
T Consensus 191 ~~~~~---------eg~~i~~~al~~L~~~ 211 (451)
T PRK06305 191 LIAKQ---------EGIETSREALLPIARA 211 (451)
T ss_pred HHHHH---------cCCCCCHHHHHHHHHH
Confidence 66654 2345899999999884
No 197
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=1.2e-14 Score=163.27 Aligned_cols=199 Identities=21% Similarity=0.329 Sum_probs=144.1
Q ss_pred CccCChHHHHHHHHHhccC-----CC-CCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCccccc----
Q 003094 198 PVVGRQPQIERVVQILGRR-----TK-NNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAG---- 267 (848)
Q Consensus 198 ~iiG~~~~~~~l~~~l~~~-----~~-~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~---- 267 (848)
+..|.+++++++++.|... .+ +=+||+||||+|||++++.+|+.+ ++.++.+.++.+.+.
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al----------~RkfvR~sLGGvrDEAEIR 393 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKAL----------GRKFVRISLGGVRDEAEIR 393 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHh----------CCCEEEEecCccccHHHhc
Confidence 6899999999999987642 22 224689999999999999999999 678999988766542
Q ss_pred ---ccccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhc-------------CCceEEEEe
Q 003094 268 ---TKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLA-------------RGELQCIGA 331 (848)
Q Consensus 268 ---~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~-------------~~~v~vI~a 331 (848)
..|.|.+..++-+-+..+...+| +++|||||.+..+-.+.....+++.|.+.-+ -.++++|+|
T Consensus 394 GHRRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaT 472 (782)
T COG0466 394 GHRRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIAT 472 (782)
T ss_pred cccccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEee
Confidence 34777777777777777776667 7789999999644333333334444433221 245999999
Q ss_pred eChHHHHhhhhcChhhhcccCCCcCCCCCHHHHHHHHHHHH-HHHhhhh-----cCCCChHHHHHHHhhhhcccccCCCh
Q 003094 332 TTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLR-ERYEIHH-----KLRYTDEALVSAAQLSYQYISDRFLP 405 (848)
Q Consensus 332 tn~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~Il~~~~-~~~~~~~-----~~~~s~~~l~~l~~~s~~~~~~~~~p 405 (848)
+|..+ .++.+|+.|+..|+++-++.+|..+|.+.++ .+....+ .+.++++++..+++.-.+..+-|.+.
T Consensus 473 ANsl~-----tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YTREAGVR~Le 547 (782)
T COG0466 473 ANSLD-----TIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYTREAGVRNLE 547 (782)
T ss_pred cCccc-----cCChHHhcceeeeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHHHHHhHhhhhhHHH
Confidence 99987 6899999999999999999999999988754 3333333 45688999888887555544444433
Q ss_pred hhHHHHH
Q 003094 406 DKAIDLI 412 (848)
Q Consensus 406 ~~a~~ll 412 (848)
+....++
T Consensus 548 R~i~ki~ 554 (782)
T COG0466 548 REIAKIC 554 (782)
T ss_pred HHHHHHH
Confidence 3333333
No 198
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.58 E-value=4.3e-14 Score=157.48 Aligned_cols=201 Identities=22% Similarity=0.283 Sum_probs=147.2
Q ss_pred hhhhhhhcCCCCCccCChHHHHHHHHHhccCCCCC-cEEECCCCCcHHHHHHHHHHHhhCCCCCC--------------C
Q 003094 186 NLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNN-PCLIGEPGVGKTAIAEGLAQRIASGDVPD--------------T 250 (848)
Q Consensus 186 ~l~~~~~~~~ld~iiG~~~~~~~l~~~l~~~~~~~-iLL~GppGtGKT~la~~la~~l~~~~~~~--------------~ 250 (848)
+|.++++|..+++++|++..++.+.+.+..+...| +||+||||+|||++++.+++.+.+...+. .
T Consensus 3 ~~~~~~rp~~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~ 82 (355)
T TIGR02397 3 VLARKYRPQTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINS 82 (355)
T ss_pred cHHHHhCCCcHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhc
Confidence 58899999999999999999999999988766665 68999999999999999999987542211 0
Q ss_pred CCCceEEEEeCCcccccccccchHHHHHHHHHHHHHh----CCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcC--C
Q 003094 251 IEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQ----SDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR--G 324 (848)
Q Consensus 251 l~~~~v~~~~~~~l~~~~~~~g~~~~~l~~l~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~--~ 324 (848)
.....++.++.... .....++.+++.+.. ++..|++|||+|.+. ....+.|...++. .
T Consensus 83 ~~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~--------~~~~~~Ll~~le~~~~ 146 (355)
T TIGR02397 83 GSSLDVIEIDAASN--------NGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLS--------KSAFNALLKTLEEPPE 146 (355)
T ss_pred CCCCCEEEeecccc--------CCHHHHHHHHHHHhcCcccCCceEEEEeChhhcC--------HHHHHHHHHHHhCCcc
Confidence 11233455543211 112235556555542 345699999999984 2356777777763 5
Q ss_pred ceEEEEeeChHHHHhhhhcChhhhcccCCCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCC
Q 003094 325 ELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFL 404 (848)
Q Consensus 325 ~v~vI~atn~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~ 404 (848)
.+.+|.+|+... .+.+.+.+|+..++|++|+.++..+++...+++ .++.++++++..++..+.+.
T Consensus 147 ~~~lIl~~~~~~-----~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~----~g~~i~~~a~~~l~~~~~g~------ 211 (355)
T TIGR02397 147 HVVFILATTEPH-----KIPATILSRCQRFDFKRIPLEDIVERLKKILDK----EGIKIEDEALELIARAADGS------ 211 (355)
T ss_pred ceeEEEEeCCHH-----HHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC------
Confidence 677777777665 467899999999999999999999999887764 56788999999999877553
Q ss_pred hhhHHHHHHHHhh
Q 003094 405 PDKAIDLIDEAGS 417 (848)
Q Consensus 405 p~~a~~ll~~a~~ 417 (848)
+..+...++.+..
T Consensus 212 ~~~a~~~lekl~~ 224 (355)
T TIGR02397 212 LRDALSLLDQLIS 224 (355)
T ss_pred hHHHHHHHHHHHh
Confidence 4456666665543
No 199
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.58 E-value=3.5e-14 Score=157.01 Aligned_cols=203 Identities=19% Similarity=0.342 Sum_probs=135.4
Q ss_pred HHHHHHhhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCC--CceEEeccccc
Q 003094 523 LKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSE--EAMIRLDMSEF 600 (848)
Q Consensus 523 ~~l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~--~~~i~i~~~~~ 600 (848)
.++++..+++++|++++++.+.+.+... ...+++|+||||||||++|+++++.+++.. .+++.+|++.+
T Consensus 7 ~ky~P~~~~~~~g~~~~~~~L~~~~~~~---------~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~ 77 (337)
T PRK12402 7 EKYRPALLEDILGQDEVVERLSRAVDSP---------NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADF 77 (337)
T ss_pred HhhCCCcHHHhcCCHHHHHHHHHHHhCC---------CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhh
Confidence 4566677788999999999888877521 123589999999999999999999987543 46788888775
Q ss_pred ccccchhcccCCCCCC---c------ccccccchhHHHH--------cCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEE
Q 003094 601 MERHTVSKLIGSPPGY---V------GYTEGGQLTEAVR--------RRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLT 663 (848)
Q Consensus 601 ~~~~~~~~l~g~~~g~---~------g~~~~~~l~~~~~--------~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~ 663 (848)
..... . .++..+.+ . +......+.+.++ ..+..+|||||++.+++..++.|+.++++..
T Consensus 78 ~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~-- 153 (337)
T PRK12402 78 FDQGK-K-YLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYS-- 153 (337)
T ss_pred hhcch-h-hhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhcc--
Confidence 42210 0 00110100 0 0001111222111 1345799999999999999999999998632
Q ss_pred cCCCceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHH
Q 003094 664 DSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKL 743 (848)
Q Consensus 664 ~~~g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~ 743 (848)
.+++||++++.... +.+.+.+|+ ..+.|.|++.+
T Consensus 154 ---------~~~~~Il~~~~~~~------------------------------------~~~~L~sr~-~~v~~~~~~~~ 187 (337)
T PRK12402 154 ---------RTCRFIIATRQPSK------------------------------------LIPPIRSRC-LPLFFRAPTDD 187 (337)
T ss_pred ---------CCCeEEEEeCChhh------------------------------------CchhhcCCc-eEEEecCCCHH
Confidence 34667777752221 336788898 78999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHH
Q 003094 744 EVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIM 796 (848)
Q Consensus 744 el~~I~~~~l~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~ 796 (848)
++..++...+.+ .+ +.+++++++.|+... ..+.|.+.+.++
T Consensus 188 ~~~~~l~~~~~~-------~~--~~~~~~al~~l~~~~---~gdlr~l~~~l~ 228 (337)
T PRK12402 188 ELVDVLESIAEA-------EG--VDYDDDGLELIAYYA---GGDLRKAILTLQ 228 (337)
T ss_pred HHHHHHHHHHHH-------cC--CCCCHHHHHHHHHHc---CCCHHHHHHHHH
Confidence 998888776653 13 448999999999842 334455444443
No 200
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=2.6e-12 Score=149.36 Aligned_cols=206 Identities=20% Similarity=0.319 Sum_probs=137.5
Q ss_pred ccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCC-------CCceEEecccccccc
Q 003094 531 KRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGS-------EEAMIRLDMSEFMER 603 (848)
Q Consensus 531 ~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~-------~~~~i~i~~~~~~~~ 603 (848)
+.|||.++.+.++.+.+.+.. ..+-+|+|+||+|||.++..+|+..-.. +..++.+|++.+.-
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~---------KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvA- 239 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRT---------KNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVA- 239 (786)
T ss_pred CCCcChHHHHHHHHHHHhccC---------CCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhc-
Confidence 468899999888888876442 1224789999999999999999887432 34567777776532
Q ss_pred cchhcccCCCCCCcccccc--cchhHHHHcCCCeEEEEcCCCcC---------ChHHHHHHHhhhcCcEEEcCCCceeec
Q 003094 604 HTVSKLIGSPPGYVGYTEG--GQLTEAVRRRPYTVVLFDEIEKA---------HPDVFNMMLQILEDGRLTDSKGRTVDF 672 (848)
Q Consensus 604 ~~~~~l~g~~~g~~g~~~~--~~l~~~~~~~~~~Vl~lDEid~l---------~~~~~~~Ll~~le~g~~~~~~g~~v~~ 672 (848)
| .+|.|..|. ..+.+.++++++-||||||+|.+ ..++-|.|...|..|++.
T Consensus 240 -------G--akyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~--------- 301 (786)
T COG0542 240 -------G--AKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELR--------- 301 (786)
T ss_pred -------c--ccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeE---------
Confidence 2 347776554 34566777788899999999965 256999999999998866
Q ss_pred CCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhc--ChhhhhccCeEEEcCCCCHHHHHHHHH
Q 003094 673 KNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYF--RPEFLNRLDEMIVFRQLTKLEVKEIAD 750 (848)
Q Consensus 673 ~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~ll~R~d~~i~f~~l~~~el~~I~~ 750 (848)
+|.+|++ .+.+++| +++|-.|| +.|....++.++-..|++
T Consensus 302 ----~IGATT~---------------------------------~EYRk~iEKD~AL~RRF-Q~V~V~EPs~e~ti~ILr 343 (786)
T COG0542 302 ----CIGATTL---------------------------------DEYRKYIEKDAALERRF-QKVLVDEPSVEDTIAILR 343 (786)
T ss_pred ----EEEeccH---------------------------------HHHHHHhhhchHHHhcC-ceeeCCCCCHHHHHHHHH
Confidence 4555531 1112222 58899999 899999999999998886
Q ss_pred HHHHHHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 003094 751 IMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSMAEKML 808 (848)
Q Consensus 751 ~~l~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~l~~~l~~~~l 808 (848)
-.-.++. . ...+.|+++|+..-+..+ .+-...|.|-..--+++..+-+..-+
T Consensus 344 Glk~~yE----~-hH~V~i~D~Al~aAv~LS-~RYI~dR~LPDKAIDLiDeA~a~~~l 395 (786)
T COG0542 344 GLKERYE----A-HHGVRITDEALVAAVTLS-DRYIPDRFLPDKAIDLLDEAGARVRL 395 (786)
T ss_pred HHHHHHH----H-ccCceecHHHHHHHHHHH-HhhcccCCCCchHHHHHHHHHHHHHh
Confidence 5544432 1 233568888877766531 01122344433333444444444433
No 201
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=5.3e-14 Score=163.32 Aligned_cols=202 Identities=19% Similarity=0.206 Sum_probs=148.4
Q ss_pred hhhhhhhcCCCCCccCChHHHHHHHHHhccCCCCC-cEEECCCCCcHHHHHHHHHHHhhCCCC---C-------------
Q 003094 186 NLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNN-PCLIGEPGVGKTAIAEGLAQRIASGDV---P------------- 248 (848)
Q Consensus 186 ~l~~~~~~~~ld~iiG~~~~~~~l~~~l~~~~~~~-iLL~GppGtGKT~la~~la~~l~~~~~---~------------- 248 (848)
-+..++||.+|++++|++..++.|...+......| +||+||+|||||++|+.+|+.+.+... +
T Consensus 5 ~l~~kyRP~~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C 84 (620)
T PRK14954 5 VIARKYRPSKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGEC 84 (620)
T ss_pred HHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccC
Confidence 36789999999999999999999999988866666 789999999999999999999987321 0
Q ss_pred ------CCCCCceEEEEeCCcccccccccchHHHHHHHHHHHHH----hCCCeEEEEcccchhhhCCCCCchHHHHHHHh
Q 003094 249 ------DTIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIK----QSDEIILFIDEVHTLIGAGAAEGAIDAANILK 318 (848)
Q Consensus 249 ------~~l~~~~v~~~~~~~l~~~~~~~g~~~~~l~~l~~~~~----~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~ 318 (848)
....+..+..++.... .+ ...++.+.+.+. .+...|++|||+|.|. ....+.|+
T Consensus 85 ~sC~~~~~g~~~n~~~~d~~s~------~~--vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt--------~~a~naLL 148 (620)
T PRK14954 85 ESCRDFDAGTSLNISEFDAASN------NS--VDDIRQLRENVRYGPQKGRYRVYIIDEVHMLS--------TAAFNAFL 148 (620)
T ss_pred HHHHHHhccCCCCeEEeccccc------CC--HHHHHHHHHHHHhhhhcCCCEEEEEeChhhcC--------HHHHHHHH
Confidence 0011123333432111 11 233445555442 2445699999999994 33678899
Q ss_pred hhhcC--CceEEEEeeChHHHHhhhhcChhhhcccCCCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhh
Q 003094 319 PSLAR--GELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSY 396 (848)
Q Consensus 319 ~~l~~--~~v~vI~atn~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~ 396 (848)
.+++. +..++|++|+... .+.+.+.+|+..++|..++.++....+...+. ..++.++++++..++..+.
T Consensus 149 K~LEePp~~tv~IL~t~~~~-----kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~----~egi~I~~eal~~La~~s~ 219 (620)
T PRK14954 149 KTLEEPPPHAIFIFATTELH-----KIPATIASRCQRFNFKRIPLDEIQSQLQMICR----AEGIQIDADALQLIARKAQ 219 (620)
T ss_pred HHHhCCCCCeEEEEEeCChh-----hhhHHHHhhceEEecCCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHhC
Confidence 99985 5577777776543 57789999999999999999998888877666 3577899999999999988
Q ss_pred cccccCCChhhHHHHHHHHhhH
Q 003094 397 QYISDRFLPDKAIDLIDEAGSR 418 (848)
Q Consensus 397 ~~~~~~~~p~~a~~ll~~a~~~ 418 (848)
+.+. .+...++.....
T Consensus 220 Gdlr------~al~eLeKL~~y 235 (620)
T PRK14954 220 GSMR------DAQSILDQVIAF 235 (620)
T ss_pred CCHH------HHHHHHHHHHHh
Confidence 7543 467777665443
No 202
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.57 E-value=2.6e-14 Score=158.27 Aligned_cols=173 Identities=18% Similarity=0.289 Sum_probs=114.9
Q ss_pred hccccChHHHHHHHHHHHHHHHccCCCCCC-CceEEEeecCCcchHHHHHHHHHHHhcCCCC---ceE-Eecccccccc-
Q 003094 530 HKRVIGQDEAVKAISRAIRRARVGLKNPNR-PIASFIFSGPTGVGKSELAKALAAYYFGSEE---AMI-RLDMSEFMER- 603 (848)
Q Consensus 530 ~~~vigq~~~~~~l~~~~~~~~~~~~~~~~-p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~---~~i-~i~~~~~~~~- 603 (848)
+++|+||+.+++.+.+++...+........ ..+.+||+||+|+|||++|+.+|+.+++... ++- +-.|..+...
T Consensus 4 f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~ 83 (394)
T PRK07940 4 WDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGT 83 (394)
T ss_pred hhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCC
Confidence 568999999999999999876432222222 2345999999999999999999999876431 111 1111222111
Q ss_pred cchhcccCCCCCCcccccccchhHHHHc----CCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecCCeEEEE
Q 003094 604 HTVSKLIGSPPGYVGYTEGGQLTEAVRR----RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIM 679 (848)
Q Consensus 604 ~~~~~l~g~~~g~~g~~~~~~l~~~~~~----~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~ 679 (848)
|....++.......+..+.+.+.+.+.. +++.|+||||+|.+++..+|.|++.||+. ..+++||+
T Consensus 84 hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep-----------~~~~~fIL 152 (394)
T PRK07940 84 HPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEP-----------PPRTVWLL 152 (394)
T ss_pred CCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcC-----------CCCCeEEE
Confidence 1111122111111222222344444443 34679999999999999999999999973 25667777
Q ss_pred ecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHH
Q 003094 680 TSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIAD 750 (848)
Q Consensus 680 tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~ 750 (848)
+|+... .+.|.+++|| ..+.|++++.+++.+++.
T Consensus 153 ~a~~~~------------------------------------~llpTIrSRc-~~i~f~~~~~~~i~~~L~ 186 (394)
T PRK07940 153 CAPSPE------------------------------------DVLPTIRSRC-RHVALRTPSVEAVAEVLV 186 (394)
T ss_pred EECChH------------------------------------HChHHHHhhC-eEEECCCCCHHHHHHHHH
Confidence 776322 2568999999 899999999999877774
No 203
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=4.5e-14 Score=157.70 Aligned_cols=200 Identities=23% Similarity=0.278 Sum_probs=144.2
Q ss_pred hhhhhhhcCCCCCccCChHHHHHHHHHhccCCC-CCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCC--CceEEEEeCC
Q 003094 186 NLTKLAEEGKLDPVVGRQPQIERVVQILGRRTK-NNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIE--GKKVITLDMG 262 (848)
Q Consensus 186 ~l~~~~~~~~ld~iiG~~~~~~~l~~~l~~~~~-~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~--~~~v~~~~~~ 262 (848)
.|.+++||.+|++++|++..++.+.+.+..+.. +++||+||||+|||++++.+++.+........-. ...++.++..
T Consensus 6 ~~~~k~rP~~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~ 85 (367)
T PRK14970 6 VSARKYRPQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAA 85 (367)
T ss_pred HHHHHHCCCcHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccc
Confidence 588999999999999999999999999987654 4688999999999999999999987633221111 1223333221
Q ss_pred cccccccccchHHHHHHHHHHHHHh----CCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcC--CceEEEEeeChHH
Q 003094 263 LLVAGTKYRGEFEERLKKLMEEIKQ----SDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR--GELQCIGATTLDE 336 (848)
Q Consensus 263 ~l~~~~~~~g~~~~~l~~l~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~atn~~~ 336 (848)
. ......+..+++.+.. ++..|++|||+|.+.. ...+.|...++. ...++|++++...
T Consensus 86 ~--------~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~--------~~~~~ll~~le~~~~~~~~Il~~~~~~ 149 (367)
T PRK14970 86 S--------NNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS--------AAFNAFLKTLEEPPAHAIFILATTEKH 149 (367)
T ss_pred c--------CCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH--------HHHHHHHHHHhCCCCceEEEEEeCCcc
Confidence 1 1112345555555432 3456999999998843 246667676663 3456666666554
Q ss_pred HHhhhhcChhhhcccCCCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCChhhHHHHHHHHh
Q 003094 337 YRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAG 416 (848)
Q Consensus 337 ~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~p~~a~~ll~~a~ 416 (848)
.+.+++.+|+..+.+++|+.++...++...+. .+++.++++++..++..+.+- .+.+...++..+
T Consensus 150 -----kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~----~~g~~i~~~al~~l~~~~~gd------lr~~~~~lekl~ 214 (367)
T PRK14970 150 -----KIIPTILSRCQIFDFKRITIKDIKEHLAGIAV----KEGIKFEDDALHIIAQKADGA------LRDALSIFDRVV 214 (367)
T ss_pred -----cCCHHHHhcceeEecCCccHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHhCCCC------HHHHHHHHHHHH
Confidence 67899999999999999999999988887776 367889999999999877653 344666666554
No 204
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=2e-14 Score=160.40 Aligned_cols=180 Identities=21% Similarity=0.373 Sum_probs=132.3
Q ss_pred CCccCChHHHHHHHHHhccCCC------CCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCccccc---
Q 003094 197 DPVVGRQPQIERVVQILGRRTK------NNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAG--- 267 (848)
Q Consensus 197 d~iiG~~~~~~~l~~~l~~~~~------~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~--- 267 (848)
++..|.+++++++++++....- .=+||+||||+|||++++.||+.+ ++.++.++++.+..-
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~AL----------nRkFfRfSvGG~tDvAeI 480 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARAL----------NRKFFRFSVGGMTDVAEI 480 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHh----------CCceEEEeccccccHHhh
Confidence 3789999999999998865332 225799999999999999999999 678899887766542
Q ss_pred ----ccccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCCc-hHHHHHHHh---------hhhc----CCceEEE
Q 003094 268 ----TKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEG-AIDAANILK---------PSLA----RGELQCI 329 (848)
Q Consensus 268 ----~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~~-~~~~~~~L~---------~~l~----~~~v~vI 329 (848)
..|+|.+..++-.-++.+.-.+| +++|||+|.+- ++.... ...+.++|. .+|+ -.++.+|
T Consensus 481 kGHRRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG-~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFi 558 (906)
T KOG2004|consen 481 KGHRRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLG-SGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFI 558 (906)
T ss_pred cccceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhC-CCCCCChHHHHHHhcChhhccchhhhccccccchhheEEE
Confidence 34778887788777787777777 67789999995 322222 222222222 2222 3569999
Q ss_pred EeeChHHHHhhhhcChhhhcccCCCcCCCCCHHHHHHHHHHHHHH-Hhh-----hhcCCCChHHHHHHHh
Q 003094 330 GATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRER-YEI-----HHKLRYTDEALVSAAQ 393 (848)
Q Consensus 330 ~atn~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~Il~~~~~~-~~~-----~~~~~~s~~~l~~l~~ 393 (848)
+|+|..+ .++++|+.|+..|+++-+..+|...|.+.++-. ... ...+.+++.++..+++
T Consensus 559 cTAN~id-----tIP~pLlDRMEvIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI~ 623 (906)
T KOG2004|consen 559 CTANVID-----TIPPPLLDRMEVIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALIE 623 (906)
T ss_pred Eeccccc-----cCChhhhhhhheeeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhcCccHHHHHHHHH
Confidence 9999998 699999999999999999999999998876532 222 2334566666655554
No 205
>CHL00176 ftsH cell division protein; Validated
Probab=99.57 E-value=3.7e-14 Score=165.72 Aligned_cols=200 Identities=20% Similarity=0.289 Sum_probs=130.6
Q ss_pred hccccChHHHHHHHHHHHHHHHccCC---CCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccch
Q 003094 530 HKRVIGQDEAVKAISRAIRRARVGLK---NPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTV 606 (848)
Q Consensus 530 ~~~vigq~~~~~~l~~~~~~~~~~~~---~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~ 606 (848)
+++|+|.+++++.+...+...+.... ....+..++||+||||||||++|+++|... +.+++.++++++.+.
T Consensus 182 f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~---~~p~i~is~s~f~~~--- 255 (638)
T CHL00176 182 FRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---EVPFFSISGSEFVEM--- 255 (638)
T ss_pred HHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeeeccHHHHHHH---
Confidence 45678888888777766543321100 011222359999999999999999999987 789999998887432
Q ss_pred hcccCCCCCCcccccccchhHHHHcCCCeEEEEcCCCcCC-----------h---HHHHHHHhhhcCcEEEcCCCceeec
Q 003094 607 SKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAH-----------P---DVFNMMLQILEDGRLTDSKGRTVDF 672 (848)
Q Consensus 607 ~~l~g~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~-----------~---~~~~~Ll~~le~g~~~~~~g~~v~~ 672 (848)
+.|. +......++..++...++||||||+|.+. . .+++.|+..|++.. ..
T Consensus 256 --~~g~-----~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~---------~~ 319 (638)
T CHL00176 256 --FVGV-----GAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFK---------GN 319 (638)
T ss_pred --hhhh-----hHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhcccc---------CC
Confidence 1111 11122445666777788999999999873 2 35666666665421 12
Q ss_pred CCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhh--hccCeEEEcCCCCHHHHHHHHH
Q 003094 673 KNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFL--NRLDEMIVFRQLTKLEVKEIAD 750 (848)
Q Consensus 673 ~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll--~R~d~~i~f~~l~~~el~~I~~ 750 (848)
.++++|++||... .++|+++ +|||..|.|++|+.++..+|++
T Consensus 320 ~~ViVIaaTN~~~------------------------------------~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~ 363 (638)
T CHL00176 320 KGVIVIAATNRVD------------------------------------ILDAALLRPGRFDRQITVSLPDREGRLDILK 363 (638)
T ss_pred CCeeEEEecCchH------------------------------------hhhhhhhccccCceEEEECCCCHHHHHHHHH
Confidence 4678999998432 2456776 4899999999999999999998
Q ss_pred HHHHHHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHHHHH
Q 003094 751 IMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLL 799 (848)
Q Consensus 751 ~~l~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~l 799 (848)
..+.... + .++..+..++. ..+.++.++|++.++...
T Consensus 364 ~~l~~~~---------~-~~d~~l~~lA~--~t~G~sgaDL~~lvneAa 400 (638)
T CHL00176 364 VHARNKK---------L-SPDVSLELIAR--RTPGFSGADLANLLNEAA 400 (638)
T ss_pred HHHhhcc---------c-chhHHHHHHHh--cCCCCCHHHHHHHHHHHH
Confidence 8876510 0 12334445554 333445666766666543
No 206
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.57 E-value=1.6e-14 Score=161.14 Aligned_cols=163 Identities=24% Similarity=0.383 Sum_probs=114.7
Q ss_pred hhccccChHHHHHHHHHHHHHHH--------ccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEeccccc
Q 003094 529 LHKRVIGQDEAVKAISRAIRRAR--------VGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEF 600 (848)
Q Consensus 529 l~~~vigq~~~~~~l~~~~~~~~--------~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~ 600 (848)
.+.+|.|.+..++.|.+.+...- .++.. ..++||+||||||||++|+++|+.+ ..+|+.++.+++
T Consensus 181 ~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~----p~gVLL~GPPGTGKT~LAraIA~el---~~~fi~V~~seL 253 (438)
T PTZ00361 181 SYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKP----PKGVILYGPPGTGKTLLAKAVANET---SATFLRVVGSEL 253 (438)
T ss_pred CHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCC----CcEEEEECCCCCCHHHHHHHHHHhh---CCCEEEEecchh
Confidence 34678899999999988886431 23332 3359999999999999999999987 567888877665
Q ss_pred ccccchhcccCCCCCCcccccc--cchhHHHHcCCCeEEEEcCCCcCC-----------hHHHHHHHhhh---cCcEEEc
Q 003094 601 MERHTVSKLIGSPPGYVGYTEG--GQLTEAVRRRPYTVVLFDEIEKAH-----------PDVFNMMLQIL---EDGRLTD 664 (848)
Q Consensus 601 ~~~~~~~~l~g~~~g~~g~~~~--~~l~~~~~~~~~~Vl~lDEid~l~-----------~~~~~~Ll~~l---e~g~~~~ 664 (848)
... |.|.... ..++..++...++||||||||.+. .+++..++.+| +...
T Consensus 254 ~~k------------~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~--- 318 (438)
T PTZ00361 254 IQK------------YLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFD--- 318 (438)
T ss_pred hhh------------hcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhc---
Confidence 322 4443322 445666666778999999999763 23444444444 3211
Q ss_pred CCCceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhh--hccCeEEEcCCCCH
Q 003094 665 SKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFL--NRLDEMIVFRQLTK 742 (848)
Q Consensus 665 ~~g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll--~R~d~~i~f~~l~~ 742 (848)
...++.||++||... .++|+++ +|||..|.|++++.
T Consensus 319 ------~~~~V~VI~ATNr~d------------------------------------~LDpaLlRpGRfd~~I~~~~Pd~ 356 (438)
T PTZ00361 319 ------SRGDVKVIMATNRIE------------------------------------SLDPALIRPGRIDRKIEFPNPDE 356 (438)
T ss_pred ------ccCCeEEEEecCChH------------------------------------HhhHHhccCCeeEEEEEeCCCCH
Confidence 124678999998432 2467776 59999999999999
Q ss_pred HHHHHHHHHHHHH
Q 003094 743 LEVKEIADIMLKE 755 (848)
Q Consensus 743 ~el~~I~~~~l~~ 755 (848)
++..+|+...+.+
T Consensus 357 ~~R~~Il~~~~~k 369 (438)
T PTZ00361 357 KTKRRIFEIHTSK 369 (438)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999876643
No 207
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=2.5e-14 Score=166.10 Aligned_cols=191 Identities=19% Similarity=0.284 Sum_probs=128.5
Q ss_pred HHHHHHhhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCC------------C
Q 003094 523 LKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSE------------E 590 (848)
Q Consensus 523 ~~l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~------------~ 590 (848)
.++++..+++++||+.++..|.+++...+ -.+.+||+||+|||||++|+.+|+.+++.. .
T Consensus 8 ~kyRP~~f~eivGQe~i~~~L~~~i~~~r--------i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~ 79 (620)
T PRK14954 8 RKYRPSKFADITAQEHITHTIQNSLRMDR--------VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTE 79 (620)
T ss_pred HHHCCCCHHHhcCcHHHHHHHHHHHHcCC--------CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCC
Confidence 46677788999999999999988876432 124599999999999999999999997632 1
Q ss_pred ceEEe-cccccccccc--hhcccCCCCCCcccccccchhHHHH----cCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEE
Q 003094 591 AMIRL-DMSEFMERHT--VSKLIGSPPGYVGYTEGGQLTEAVR----RRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLT 663 (848)
Q Consensus 591 ~~i~i-~~~~~~~~~~--~~~l~g~~~g~~g~~~~~~l~~~~~----~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~ 663 (848)
++-.+ .|..+..... +..+-|. ...+.++...+.+.+. .+.+.|+||||+|.++...+|.|++.||+
T Consensus 80 ~Cg~C~sC~~~~~g~~~n~~~~d~~--s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEe---- 153 (620)
T PRK14954 80 PCGECESCRDFDAGTSLNISEFDAA--SNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEE---- 153 (620)
T ss_pred CCccCHHHHHHhccCCCCeEEeccc--ccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhC----
Confidence 11111 1111111100 1111111 1111222222333332 24567999999999999999999999998
Q ss_pred cCCCceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHH
Q 003094 664 DSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKL 743 (848)
Q Consensus 664 ~~~g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~ 743 (848)
+..+++||++++... .+.+.+.+|| .++.|.+++.+
T Consensus 154 -------Pp~~tv~IL~t~~~~------------------------------------kLl~TI~SRc-~~vef~~l~~~ 189 (620)
T PRK14954 154 -------PPPHAIFIFATTELH------------------------------------KIPATIASRC-QRFNFKRIPLD 189 (620)
T ss_pred -------CCCCeEEEEEeCChh------------------------------------hhhHHHHhhc-eEEecCCCCHH
Confidence 235678888775211 2447899999 99999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCeEeecHHHHHHHHHc
Q 003094 744 EVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEE 780 (848)
Q Consensus 744 el~~I~~~~l~~~~~~~~~~~~~l~i~~~a~~~l~~~ 780 (848)
++...+...+.. ..+.++++++++|+..
T Consensus 190 ei~~~L~~i~~~---------egi~I~~eal~~La~~ 217 (620)
T PRK14954 190 EIQSQLQMICRA---------EGIQIDADALQLIARK 217 (620)
T ss_pred HHHHHHHHHHHH---------cCCCCCHHHHHHHHHH
Confidence 999888766654 2345899999998874
No 208
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.57 E-value=1.1e-13 Score=159.22 Aligned_cols=210 Identities=20% Similarity=0.160 Sum_probs=145.0
Q ss_pred CCCccCChHHHHHHHHHhcc----CCCCCc-EEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccccc--
Q 003094 196 LDPVVGRQPQIERVVQILGR----RTKNNP-CLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGT-- 268 (848)
Q Consensus 196 ld~iiG~~~~~~~l~~~l~~----~~~~~i-LL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~-- 268 (848)
.+.+.||++++++|..+|.. ..+.++ +|+|+||||||++++.+.+.+........+....+++++|..+....
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sI 833 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAA 833 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHH
Confidence 46789999999998877653 445565 59999999999999999988853211112234678889985433210
Q ss_pred ------------cccc-hHHHHHHHHHHHHHh--CCCeEEEEcccchhhhCCCCCchHHHHHHHhh-hhcCCceEEEEee
Q 003094 269 ------------KYRG-EFEERLKKLMEEIKQ--SDEIILFIDEVHTLIGAGAAEGAIDAANILKP-SLARGELQCIGAT 332 (848)
Q Consensus 269 ------------~~~g-~~~~~l~~l~~~~~~--~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~-~l~~~~v~vI~at 332 (848)
...| .....+..++..+.. ....||+|||+|.|.... ...+.+++.. ......+.+||++
T Consensus 834 YqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~----QDVLYnLFR~~~~s~SKLiLIGIS 909 (1164)
T PTZ00112 834 YQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKT----QKVLFTLFDWPTKINSKLVLIAIS 909 (1164)
T ss_pred HHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccH----HHHHHHHHHHhhccCCeEEEEEec
Confidence 1111 123445566665532 234699999999997531 1222223321 1235679999999
Q ss_pred ChHHHHhhhhcChhhhcccC--CCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCChhhHHH
Q 003094 333 TLDEYRKHIEKDPALERRFQ--PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAID 410 (848)
Q Consensus 333 n~~~~~~~~~~d~al~~Rf~--~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~p~~a~~ 410 (848)
|..++.. .+++.+.+||. .|.|++++.+|+.+||+..++.. ...++++++..+++.+....++ .++|++
T Consensus 910 NdlDLpe--rLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A----~gVLdDdAIELIArkVAq~SGD---ARKALD 980 (1164)
T PTZ00112 910 NTMDLPE--RLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENC----KEIIDHTAIQLCARKVANVSGD---IRKALQ 980 (1164)
T ss_pred Cchhcch--hhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhC----CCCCCHHHHHHHHHhhhhcCCH---HHHHHH
Confidence 9766443 46789999995 69999999999999999887642 3458999999999977766666 678999
Q ss_pred HHHHHhhH
Q 003094 411 LIDEAGSR 418 (848)
Q Consensus 411 ll~~a~~~ 418 (848)
+|..|+..
T Consensus 981 ILRrAgEi 988 (1164)
T PTZ00112 981 ICRKAFEN 988 (1164)
T ss_pred HHHHHHhh
Confidence 99998764
No 209
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.56 E-value=2.6e-14 Score=165.15 Aligned_cols=205 Identities=18% Similarity=0.231 Sum_probs=135.7
Q ss_pred HHHHHHhhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCC----CceE-Eecc
Q 003094 523 LKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSE----EAMI-RLDM 597 (848)
Q Consensus 523 ~~l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~----~~~i-~i~~ 597 (848)
.++++..+++|+||+.++..+.+.+...+ ..+.+||+||+|+|||++|+++|+.+.+.. .++. +-+|
T Consensus 8 ~kyRP~~f~diiGqe~iv~~L~~~i~~~~--------i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C 79 (563)
T PRK06647 8 TKRRPRDFNSLEGQDFVVETLKHSIESNK--------IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSC 79 (563)
T ss_pred HHhCCCCHHHccCcHHHHHHHHHHHHcCC--------CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHH
Confidence 46677788999999999999998887432 224599999999999999999999986532 1221 1122
Q ss_pred cccccccch--hcccCCCCCCcccccccchhHHHH----cCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceee
Q 003094 598 SEFMERHTV--SKLIGSPPGYVGYTEGGQLTEAVR----RRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVD 671 (848)
Q Consensus 598 ~~~~~~~~~--~~l~g~~~g~~g~~~~~~l~~~~~----~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~ 671 (848)
..+...... ..+-|.. ..+......+.+.+. .+.+.|++|||+|.++...+|.|++.||+ +
T Consensus 80 ~~i~~~~~~dv~~idgas--~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEe-----------p 146 (563)
T PRK06647 80 KSIDNDNSLDVIEIDGAS--NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEE-----------P 146 (563)
T ss_pred HHHHcCCCCCeEEecCcc--cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhcc-----------C
Confidence 222111111 1111110 011111122222222 24567999999999999999999999997 2
Q ss_pred cCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHHH
Q 003094 672 FKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADI 751 (848)
Q Consensus 672 ~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~~ 751 (848)
+.+++||++++... .+.+.+.+|| ..+.|.+++.+++.+.+..
T Consensus 147 p~~~vfI~~tte~~------------------------------------kL~~tI~SRc-~~~~f~~l~~~el~~~L~~ 189 (563)
T PRK06647 147 PPYIVFIFATTEVH------------------------------------KLPATIKSRC-QHFNFRLLSLEKIYNMLKK 189 (563)
T ss_pred CCCEEEEEecCChH------------------------------------HhHHHHHHhc-eEEEecCCCHHHHHHHHHH
Confidence 36788888875211 2457899999 7899999999999888876
Q ss_pred HHHHHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHHH
Q 003094 752 MLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMR 797 (848)
Q Consensus 752 ~l~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~ 797 (848)
.+.. ..+.++++++++|+...- ++.|.+.+.+++
T Consensus 190 i~~~---------egi~id~eAl~lLa~~s~---GdlR~alslLdk 223 (563)
T PRK06647 190 VCLE---------DQIKYEDEALKWIAYKST---GSVRDAYTLFDQ 223 (563)
T ss_pred HHHH---------cCCCCCHHHHHHHHHHcC---CCHHHHHHHHHH
Confidence 6543 234589999999998421 234555555543
No 210
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.56 E-value=5.7e-14 Score=154.04 Aligned_cols=201 Identities=19% Similarity=0.259 Sum_probs=143.2
Q ss_pred hhhhhhhhcCCCCCccCChHHHHHHHHHhccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcc
Q 003094 185 TNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLL 264 (848)
Q Consensus 185 ~~l~~~~~~~~ld~iiG~~~~~~~l~~~l~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l 264 (848)
..|.++++|.++++++|+++.++.+...+..+..++++|+||||+|||++++.+++.+..... ...++.++.+..
T Consensus 5 ~~w~~kyrP~~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~-----~~~~i~~~~~~~ 79 (319)
T PRK00440 5 EIWVEKYRPRTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGEDW-----RENFLELNASDE 79 (319)
T ss_pred CccchhhCCCcHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCcc-----ccceEEeccccc
Confidence 459999999999999999999999999998877788999999999999999999999854321 123444443321
Q ss_pred cccccccchHHHHHHHHHHHHH--hCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhc--CCceEEEEeeChHHHHhh
Q 003094 265 VAGTKYRGEFEERLKKLMEEIK--QSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLA--RGELQCIGATTLDEYRKH 340 (848)
Q Consensus 265 ~~~~~~~g~~~~~l~~l~~~~~--~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~--~~~v~vI~atn~~~~~~~ 340 (848)
.. .......+..+..... .....+++|||+|.+.. +..+.|..+++ .....+|.+++...
T Consensus 80 ~~----~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~--------~~~~~L~~~le~~~~~~~lIl~~~~~~---- 143 (319)
T PRK00440 80 RG----IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS--------DAQQALRRTMEMYSQNTRFILSCNYSS---- 143 (319)
T ss_pred cc----hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH--------HHHHHHHHHHhcCCCCCeEEEEeCCcc----
Confidence 10 0111122222211110 12356999999999843 24556666665 34456666776554
Q ss_pred hhcChhhhcccCCCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCChhhHHHHHHHHhh
Q 003094 341 IEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGS 417 (848)
Q Consensus 341 ~~~d~al~~Rf~~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~p~~a~~ll~~a~~ 417 (848)
.+.+++.+|+..+.|++++.++...+++..+.+ .++.++++++..++..+.+. ++.++..++.++.
T Consensus 144 -~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~~----~~~~i~~~al~~l~~~~~gd------~r~~~~~l~~~~~ 209 (319)
T PRK00440 144 -KIIDPIQSRCAVFRFSPLKKEAVAERLRYIAEN----EGIEITDDALEAIYYVSEGD------MRKAINALQAAAA 209 (319)
T ss_pred -ccchhHHHHhheeeeCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC------HHHHHHHHHHHHH
Confidence 466789999999999999999999888887763 57789999999999887654 4457777776553
No 211
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=1e-13 Score=139.86 Aligned_cols=204 Identities=18% Similarity=0.270 Sum_probs=136.8
Q ss_pred hccccChHHHHHHHHHHHHHHHc---cCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccch
Q 003094 530 HKRVIGQDEAVKAISRAIRRARV---GLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTV 606 (848)
Q Consensus 530 ~~~vigq~~~~~~l~~~~~~~~~---~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~ 606 (848)
|.+|-|.+.++++|.+++-.... -....++|...+||+|||||||+.||+++|..- +..|+++..++++..
T Consensus 132 WsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA---nSTFFSvSSSDLvSK--- 205 (439)
T KOG0739|consen 132 WSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSSSDLVSK--- 205 (439)
T ss_pred hhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc---CCceEEeehHHHHHH---
Confidence 67889999999999888754311 011124577789999999999999999999876 577888777766543
Q ss_pred hcccCCCCCCcccccc--cchhHHHHcCCCeEEEEcCCCcCC-----------hHHHHHHHhhhcCcEEEcCCCceeecC
Q 003094 607 SKLIGSPPGYVGYTEG--GQLTEAVRRRPYTVVLFDEIEKAH-----------PDVFNMMLQILEDGRLTDSKGRTVDFK 673 (848)
Q Consensus 607 ~~l~g~~~g~~g~~~~--~~l~~~~~~~~~~Vl~lDEid~l~-----------~~~~~~Ll~~le~g~~~~~~g~~v~~~ 673 (848)
|.|++++ ..|++.+++..++||||||||.+. ..+-..||-.|.. . ..+..
T Consensus 206 ---------WmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqG-V-------G~d~~ 268 (439)
T KOG0739|consen 206 ---------WMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQG-V-------GNDND 268 (439)
T ss_pred ---------HhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhc-c-------ccCCC
Confidence 6777665 779999999999999999999873 2344455555543 1 12334
Q ss_pred CeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHHHHH
Q 003094 674 NTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIML 753 (848)
Q Consensus 674 ~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~~~l 753 (848)
.++++.+||.+-. ++.+++.||+.-|+++-+.......+++..+
T Consensus 269 gvLVLgATNiPw~------------------------------------LDsAIRRRFekRIYIPLPe~~AR~~MF~lhl 312 (439)
T KOG0739|consen 269 GVLVLGATNIPWV------------------------------------LDSAIRRRFEKRIYIPLPEAHARARMFKLHL 312 (439)
T ss_pred ceEEEecCCCchh------------------------------------HHHHHHHHhhcceeccCCcHHHhhhhheecc
Confidence 5677778884332 5678889998888888887776666654443
Q ss_pred HHHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHHHHHHHHH
Q 003094 754 KEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSM 803 (848)
Q Consensus 754 ~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~l~~~l 803 (848)
.. ..-.+++.-...|... ...|...++.=++++.++.++
T Consensus 313 G~---------tp~~LT~~d~~eL~~k--TeGySGsDisivVrDalmePv 351 (439)
T KOG0739|consen 313 GD---------TPHVLTEQDFKELARK--TEGYSGSDISIVVRDALMEPV 351 (439)
T ss_pred CC---------CccccchhhHHHHHhh--cCCCCcCceEEEehhhhhhhH
Confidence 22 1123566666677763 333344444444555555444
No 212
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=2e-14 Score=161.24 Aligned_cols=191 Identities=19% Similarity=0.245 Sum_probs=127.0
Q ss_pred HHHHHHhhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCC------------C
Q 003094 523 LKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSE------------E 590 (848)
Q Consensus 523 ~~l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~------------~ 590 (848)
.++++..+++|+||+.+++.|.+.+...+ ..+.+||+||+|+|||++|+++|+.+++.. .
T Consensus 8 ~k~RP~~~~eiiGq~~~~~~L~~~~~~~~--------~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~ 79 (397)
T PRK14955 8 RKYRPKKFADITAQEHITRTIQNSLRMGR--------VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTE 79 (397)
T ss_pred HhcCCCcHhhccChHHHHHHHHHHHHhCC--------cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCC
Confidence 45667778899999999999988887432 223599999999999999999999997632 1
Q ss_pred ceEEe-cccccccccc--hhcccCCCCCCcccccccchhHHHHc----CCCeEEEEcCCCcCChHHHHHHHhhhcCcEEE
Q 003094 591 AMIRL-DMSEFMERHT--VSKLIGSPPGYVGYTEGGQLTEAVRR----RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLT 663 (848)
Q Consensus 591 ~~i~i-~~~~~~~~~~--~~~l~g~~~g~~g~~~~~~l~~~~~~----~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~ 663 (848)
++..+ .|..+..... +..+-|. +..+.++...+.+.+.. +++.|+||||+|.++...++.|++.+|+.
T Consensus 80 ~c~~c~~c~~~~~~~~~n~~~~~~~--~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep--- 154 (397)
T PRK14955 80 PCGECESCRDFDAGTSLNISEFDAA--SNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEP--- 154 (397)
T ss_pred CCCCCHHHHHHhcCCCCCeEeeccc--ccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcC---
Confidence 11110 1111111000 0011110 01111112223333322 34679999999999999999999999972
Q ss_pred cCCCceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHH
Q 003094 664 DSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKL 743 (848)
Q Consensus 664 ~~~g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~ 743 (848)
...++||++++... .+.+.+.+|+ .++.|.+++.+
T Consensus 155 --------~~~t~~Il~t~~~~------------------------------------kl~~tl~sR~-~~v~f~~l~~~ 189 (397)
T PRK14955 155 --------PPHAIFIFATTELH------------------------------------KIPATIASRC-QRFNFKRIPLE 189 (397)
T ss_pred --------CCCeEEEEEeCChH------------------------------------HhHHHHHHHH-HHhhcCCCCHH
Confidence 24667877774111 2346788999 78999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCeEeecHHHHHHHHHc
Q 003094 744 EVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEE 780 (848)
Q Consensus 744 el~~I~~~~l~~~~~~~~~~~~~l~i~~~a~~~l~~~ 780 (848)
++.+.+...+.. ..+.++++++++|+..
T Consensus 190 ei~~~l~~~~~~---------~g~~i~~~al~~l~~~ 217 (397)
T PRK14955 190 EIQQQLQGICEA---------EGISVDADALQLIGRK 217 (397)
T ss_pred HHHHHHHHHHHH---------cCCCCCHHHHHHHHHH
Confidence 999888766653 2345899999999884
No 213
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=4.8e-14 Score=162.17 Aligned_cols=165 Identities=25% Similarity=0.403 Sum_probs=128.2
Q ss_pred hhccccChHHHHHHHHHHHHH-------HHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccc
Q 003094 529 LHKRVIGQDEAVKAISRAIRR-------ARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFM 601 (848)
Q Consensus 529 l~~~vigq~~~~~~l~~~~~~-------~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~ 601 (848)
.+++|.|.+++++.|.+.+.. .+.|.+.|+ .+||+||||||||.||+++|... +.||+.+..++|.
T Consensus 309 ~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPk----GvLL~GPPGTGKTLLAKAiAGEA---gVPF~svSGSEFv 381 (774)
T KOG0731|consen 309 KFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPK----GVLLVGPPGTGKTLLAKAIAGEA---GVPFFSVSGSEFV 381 (774)
T ss_pred ccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcC----ceEEECCCCCcHHHHHHHHhccc---CCceeeechHHHH
Confidence 467788888888887776643 234544443 48999999999999999999875 8999999999997
Q ss_pred cccchhcccCCCCCCcccccccchhHHHHcCCCeEEEEcCCCcCC---------------hHHHHHHHhhhcCcEEEcCC
Q 003094 602 ERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAH---------------PDVFNMMLQILEDGRLTDSK 666 (848)
Q Consensus 602 ~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~---------------~~~~~~Ll~~le~g~~~~~~ 666 (848)
+. +.| +|.+-.+.++...+...++|||+||||... ...+|+|+..||....+
T Consensus 382 E~-----~~g-----~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~--- 448 (774)
T KOG0731|consen 382 EM-----FVG-----VGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETS--- 448 (774)
T ss_pred HH-----hcc-----cchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCC---
Confidence 64 121 233334678888999999999999999652 24788899888864322
Q ss_pred CceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhh--hccCeEEEcCCCCHHH
Q 003094 667 GRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFL--NRLDEMIVFRQLTKLE 744 (848)
Q Consensus 667 g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll--~R~d~~i~f~~l~~~e 744 (848)
.+++|+++||... .++++|+ +|||..|..+.++...
T Consensus 449 ------~~vi~~a~tnr~d------------------------------------~ld~allrpGRfdr~i~i~~p~~~~ 486 (774)
T KOG0731|consen 449 ------KGVIVLAATNRPD------------------------------------ILDPALLRPGRFDRQIQIDLPDVKG 486 (774)
T ss_pred ------CcEEEEeccCCcc------------------------------------ccCHHhcCCCccccceeccCCchhh
Confidence 5689999998443 2567777 7999999999999999
Q ss_pred HHHHHHHHHHH
Q 003094 745 VKEIADIMLKE 755 (848)
Q Consensus 745 l~~I~~~~l~~ 755 (848)
..+|++..+..
T Consensus 487 r~~i~~~h~~~ 497 (774)
T KOG0731|consen 487 RASILKVHLRK 497 (774)
T ss_pred hHHHHHHHhhc
Confidence 99999888765
No 214
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=9.9e-14 Score=162.17 Aligned_cols=201 Identities=21% Similarity=0.231 Sum_probs=152.2
Q ss_pred hhhhhhhcCCCCCccCChHHHHHHHHHhccCCCCC-cEEECCCCCcHHHHHHHHHHHhhCCCCC---------------C
Q 003094 186 NLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNN-PCLIGEPGVGKTAIAEGLAQRIASGDVP---------------D 249 (848)
Q Consensus 186 ~l~~~~~~~~ld~iiG~~~~~~~l~~~l~~~~~~~-iLL~GppGtGKT~la~~la~~l~~~~~~---------------~ 249 (848)
-++.++||..|++++|++..++.|...+..+...| +||+||+|+|||++|+.+|+.+.+.... .
T Consensus 6 ~~~~kyRP~~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~ 85 (614)
T PRK14971 6 VSARKYRPSTFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFN 85 (614)
T ss_pred HHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHh
Confidence 47889999999999999999999999998877777 6899999999999999999998753211 0
Q ss_pred CCCCceEEEEeCCcccccccccchHHHHHHHHHHHHHh----CCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcC--
Q 003094 250 TIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQ----SDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR-- 323 (848)
Q Consensus 250 ~l~~~~v~~~~~~~l~~~~~~~g~~~~~l~~l~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~-- 323 (848)
......++.++.+... ....++.+++.+.. ++..|++|||+|.|. .+.++.|+.+++.
T Consensus 86 ~~~~~n~~~ld~~~~~--------~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls--------~~a~naLLK~LEepp 149 (614)
T PRK14971 86 EQRSYNIHELDAASNN--------SVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLS--------QAAFNAFLKTLEEPP 149 (614)
T ss_pred cCCCCceEEecccccC--------CHHHHHHHHHHHhhCcccCCcEEEEEECcccCC--------HHHHHHHHHHHhCCC
Confidence 1112345555543111 12345555555542 345699999999994 3478899999985
Q ss_pred CceEEEEeeChHHHHhhhhcChhhhcccCCCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCC
Q 003094 324 GELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRF 403 (848)
Q Consensus 324 ~~v~vI~atn~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~ 403 (848)
...++|++|+... .+.+.+++|+..++|.+++.++....+...+.+ .++.++++++..++..+.+.+
T Consensus 150 ~~tifIL~tt~~~-----kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~----egi~i~~~al~~La~~s~gdl---- 216 (614)
T PRK14971 150 SYAIFILATTEKH-----KILPTILSRCQIFDFNRIQVADIVNHLQYVASK----EGITAEPEALNVIAQKADGGM---- 216 (614)
T ss_pred CCeEEEEEeCCch-----hchHHHHhhhheeecCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH----
Confidence 5677788777554 688999999999999999999999888877763 578899999999999887653
Q ss_pred ChhhHHHHHHHHhh
Q 003094 404 LPDKAIDLIDEAGS 417 (848)
Q Consensus 404 ~p~~a~~ll~~a~~ 417 (848)
+.+..+++..+.
T Consensus 217 --r~al~~Lekl~~ 228 (614)
T PRK14971 217 --RDALSIFDQVVS 228 (614)
T ss_pred --HHHHHHHHHHHH
Confidence 347777766543
No 215
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=1.1e-13 Score=161.71 Aligned_cols=199 Identities=23% Similarity=0.236 Sum_probs=148.9
Q ss_pred hhhhhhhcCCCCCccCChHHHHHHHHHhccCC-CCCcEEECCCCCcHHHHHHHHHHHhhCCCCCC---------------
Q 003094 186 NLTKLAEEGKLDPVVGRQPQIERVVQILGRRT-KNNPCLIGEPGVGKTAIAEGLAQRIASGDVPD--------------- 249 (848)
Q Consensus 186 ~l~~~~~~~~ld~iiG~~~~~~~l~~~l~~~~-~~~iLL~GppGtGKT~la~~la~~l~~~~~~~--------------- 249 (848)
+|.+++||..|++++|++..++.|...+.... ..++||+||+|+|||++|+.+|+.+.+.....
T Consensus 5 pl~~kyRP~~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i 84 (620)
T PRK14948 5 PLHHKYRPQRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAI 84 (620)
T ss_pred hHHHHhCCCcHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHH
Confidence 58899999999999999999999999888754 36788999999999999999999997642110
Q ss_pred -CCCCceEEEEeCCcccccccccchHHHHHHHHHHHHHh----CCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcC-
Q 003094 250 -TIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQ----SDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR- 323 (848)
Q Consensus 250 -~l~~~~v~~~~~~~l~~~~~~~g~~~~~l~~l~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~- 323 (848)
...+..+++++.. .......++.+++.+.. +...|+||||+|.|. .+..+.|+..++.
T Consensus 85 ~~g~h~D~~ei~~~--------~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt--------~~a~naLLK~LEeP 148 (620)
T PRK14948 85 AAGNALDVIEIDAA--------SNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLS--------TAAFNALLKTLEEP 148 (620)
T ss_pred hcCCCccEEEEecc--------ccCCHHHHHHHHHHHhhChhcCCceEEEEECccccC--------HHHHHHHHHHHhcC
Confidence 0011234444322 11223456666666542 345699999999994 3478888998884
Q ss_pred -CceEEEEeeChHHHHhhhhcChhhhcccCCCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccC
Q 003094 324 -GELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDR 402 (848)
Q Consensus 324 -~~v~vI~atn~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~ 402 (848)
+.+++|++|+... .+.+.+++||..+.|..++.++....+..++. ..++.++++++..++..+.+.+
T Consensus 149 p~~tvfIL~t~~~~-----~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~----kegi~is~~al~~La~~s~G~l--- 216 (620)
T PRK14948 149 PPRVVFVLATTDPQ-----RVLPTIISRCQRFDFRRIPLEAMVQHLSEIAE----KESIEIEPEALTLVAQRSQGGL--- 216 (620)
T ss_pred CcCeEEEEEeCChh-----hhhHHHHhheeEEEecCCCHHHHHHHHHHHHH----HhCCCCCHHHHHHHHHHcCCCH---
Confidence 5678888887655 57789999999999999999988887777666 3567789999999999887653
Q ss_pred CChhhHHHHHHHH
Q 003094 403 FLPDKAIDLIDEA 415 (848)
Q Consensus 403 ~~p~~a~~ll~~a 415 (848)
+.+..+++..
T Consensus 217 ---r~A~~lLekl 226 (620)
T PRK14948 217 ---RDAESLLDQL 226 (620)
T ss_pred ---HHHHHHHHHH
Confidence 4577777653
No 216
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.54 E-value=1.5e-13 Score=143.01 Aligned_cols=179 Identities=13% Similarity=0.146 Sum_probs=124.5
Q ss_pred CCCCcc-C-ChHHHHHHHHHhccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccccccccc
Q 003094 195 KLDPVV-G-RQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRG 272 (848)
Q Consensus 195 ~ld~ii-G-~~~~~~~l~~~l~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~~~~g 272 (848)
+||+++ | ....+..+.++......++++|+||||||||++++++++.+... +..+.+++......
T Consensus 20 ~fd~f~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~-------~~~v~y~~~~~~~~------ 86 (235)
T PRK08084 20 TFASFYPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQR-------GRAVGYVPLDKRAW------ 86 (235)
T ss_pred CccccccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhC-------CCeEEEEEHHHHhh------
Confidence 466655 4 44566666666655666789999999999999999999987542 45677776654321
Q ss_pred hHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCCceEEEEeeChHHHHhhhhcChhhhccc-
Q 003094 273 EFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATTLDEYRKHIEKDPALERRF- 351 (848)
Q Consensus 273 ~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~atn~~~~~~~~~~d~al~~Rf- 351 (848)
....+++...+.. +|+|||++.+.+. ......+.+.+....+.++..+|+|++.+.. ..-...|.|.+||
T Consensus 87 ----~~~~~~~~~~~~d--lliiDdi~~~~~~--~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~-~l~~~~~~L~SRl~ 157 (235)
T PRK08084 87 ----FVPEVLEGMEQLS--LVCIDNIECIAGD--ELWEMAIFDLYNRILESGRTRLLITGDRPPR-QLNLGLPDLASRLD 157 (235)
T ss_pred ----hhHHHHHHhhhCC--EEEEeChhhhcCC--HHHHHHHHHHHHHHHHcCCCeEEEeCCCChH-HcCcccHHHHHHHh
Confidence 1122333333332 8999999998432 2223446677777777777666666654432 1112579999999
Q ss_pred --CCCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhccc
Q 003094 352 --QPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYI 399 (848)
Q Consensus 352 --~~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~ 399 (848)
..+.+.+|+.+++.++++.... ..++.++++++++++..+.+-.
T Consensus 158 ~g~~~~l~~~~~~~~~~~l~~~a~----~~~~~l~~~v~~~L~~~~~~d~ 203 (235)
T PRK08084 158 WGQIYKLQPLSDEEKLQALQLRAR----LRGFELPEDVGRFLLKRLDREM 203 (235)
T ss_pred CCceeeecCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHhhcCCH
Confidence 5899999999999999987655 3478999999999998776643
No 217
>PRK04195 replication factor C large subunit; Provisional
Probab=99.54 E-value=6.6e-14 Score=161.23 Aligned_cols=193 Identities=23% Similarity=0.357 Sum_probs=136.8
Q ss_pred HHHHHHhhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEeccccccc
Q 003094 523 LKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFME 602 (848)
Q Consensus 523 ~~l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~ 602 (848)
+++++.-.++++||+.+++.+...+..+..| +|..++||+||||||||++|+++|+.+ +..++.+|.+....
T Consensus 6 eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~g-----~~~~~lLL~GppG~GKTtla~ala~el---~~~~ielnasd~r~ 77 (482)
T PRK04195 6 EKYRPKTLSDVVGNEKAKEQLREWIESWLKG-----KPKKALLLYGPPGVGKTSLAHALANDY---GWEVIELNASDQRT 77 (482)
T ss_pred hhcCCCCHHHhcCCHHHHHHHHHHHHHHhcC-----CCCCeEEEECCCCCCHHHHHHHHHHHc---CCCEEEEccccccc
Confidence 3455556678999999999999999877533 224569999999999999999999997 67788888877654
Q ss_pred ccchhcccCCCCCCcccccccchhHHHHcCCCeEEEEcCCCcCCh----HHHHHHHhhhcCcEEEcCCCceeecCCeEEE
Q 003094 603 RHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHP----DVFNMMLQILEDGRLTDSKGRTVDFKNTLLI 678 (848)
Q Consensus 603 ~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~----~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI 678 (848)
...+..+++....+ ..++ ...+.||+|||+|.++. ..++.|+++++.. +..||
T Consensus 78 ~~~i~~~i~~~~~~------~sl~----~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~-------------~~~iI 134 (482)
T PRK04195 78 ADVIERVAGEAATS------GSLF----GARRKLILLDEVDGIHGNEDRGGARAILELIKKA-------------KQPII 134 (482)
T ss_pred HHHHHHHHHHhhcc------Cccc----CCCCeEEEEecCcccccccchhHHHHHHHHHHcC-------------CCCEE
Confidence 33333333321100 1111 02567999999999976 6789999999752 33467
Q ss_pred EecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcCh-hhhhccCeEEEcCCCCHHHHHHHHHHHHHHHH
Q 003094 679 MTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRP-EFLNRLDEMIVFRQLTKLEVKEIADIMLKEVF 757 (848)
Q Consensus 679 ~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~ll~R~d~~i~f~~l~~~el~~I~~~~l~~~~ 757 (848)
+++|.... ..+ .+.+|| ..|.|++++.+++..++...+..
T Consensus 135 li~n~~~~------------------------------------~~~k~Lrsr~-~~I~f~~~~~~~i~~~L~~i~~~-- 175 (482)
T PRK04195 135 LTANDPYD------------------------------------PSLRELRNAC-LMIEFKRLSTRSIVPVLKRICRK-- 175 (482)
T ss_pred EeccCccc------------------------------------cchhhHhccc-eEEEecCCCHHHHHHHHHHHHHH--
Confidence 77773221 123 577787 88999999999999998777754
Q ss_pred HHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHHHH
Q 003094 758 DRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRL 798 (848)
Q Consensus 758 ~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~ 798 (848)
..+.+++++++.|+.. ..++++.++..+
T Consensus 176 -------egi~i~~eaL~~Ia~~------s~GDlR~ain~L 203 (482)
T PRK04195 176 -------EGIECDDEALKEIAER------SGGDLRSAINDL 203 (482)
T ss_pred -------cCCCCCHHHHHHHHHH------cCCCHHHHHHHH
Confidence 2345899999999984 235676666633
No 218
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.54 E-value=1.3e-13 Score=150.97 Aligned_cols=183 Identities=20% Similarity=0.212 Sum_probs=131.5
Q ss_pred HHHHHHHHhhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEeccccc
Q 003094 521 RLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEF 600 (848)
Q Consensus 521 ~l~~l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~ 600 (848)
..+++++...++++||+.+.+.+...+... +....+||+||||+|||++|+++++.+ +.+++.+|++.
T Consensus 11 w~~kyrP~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~lll~G~~G~GKT~la~~l~~~~---~~~~~~i~~~~- 78 (316)
T PHA02544 11 WEQKYRPSTIDECILPAADKETFKSIVKKG--------RIPNMLLHSPSPGTGKTTVAKALCNEV---GAEVLFVNGSD- 78 (316)
T ss_pred ceeccCCCcHHHhcCcHHHHHHHHHHHhcC--------CCCeEEEeeCcCCCCHHHHHHHHHHHh---CccceEeccCc-
Confidence 345667777889999999999888877621 222346679999999999999999987 45677777765
Q ss_pred ccccchhcccCCCCCCcccccccchhHHHH----cCCCeEEEEcCCCcC-ChHHHHHHHhhhcCcEEEcCCCceeecCCe
Q 003094 601 MERHTVSKLIGSPPGYVGYTEGGQLTEAVR----RRPYTVVLFDEIEKA-HPDVFNMMLQILEDGRLTDSKGRTVDFKNT 675 (848)
Q Consensus 601 ~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~----~~~~~Vl~lDEid~l-~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~ 675 (848)
.....+. ..+.+... ...+.||||||+|.+ ..+.++.|..+++... .++
T Consensus 79 ~~~~~i~---------------~~l~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~-----------~~~ 132 (316)
T PHA02544 79 CRIDFVR---------------NRLTRFASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYS-----------KNC 132 (316)
T ss_pred ccHHHHH---------------HHHHHHHHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhcC-----------CCc
Confidence 1100000 11111111 135689999999999 6778888988888632 567
Q ss_pred EEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHHHHHHH
Q 003094 676 LLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKE 755 (848)
Q Consensus 676 iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~~~l~~ 755 (848)
.||+|+|... .+.+.+.+|| ..+.|++++.++...++..++..
T Consensus 133 ~~Ilt~n~~~------------------------------------~l~~~l~sR~-~~i~~~~p~~~~~~~il~~~~~~ 175 (316)
T PHA02544 133 SFIITANNKN------------------------------------GIIEPLRSRC-RVIDFGVPTKEEQIEMMKQMIVR 175 (316)
T ss_pred eEEEEcCChh------------------------------------hchHHHHhhc-eEEEeCCCCHHHHHHHHHHHHHH
Confidence 8999997322 2458899999 78999999999999998887777
Q ss_pred HHHHHhcCCCeEeecHHHHHHHHHc
Q 003094 756 VFDRLKTKDIELQVTERFRERVVEE 780 (848)
Q Consensus 756 ~~~~~~~~~~~l~i~~~a~~~l~~~ 780 (848)
....+...+. .++++++..++..
T Consensus 176 ~~~~~~~~~~--~i~~~al~~l~~~ 198 (316)
T PHA02544 176 CKGILEAEGV--EVDMKVLAALVKK 198 (316)
T ss_pred HHHHHHhcCC--CCCHHHHHHHHHh
Confidence 6554444444 4799999999984
No 219
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.53 E-value=2.3e-13 Score=150.76 Aligned_cols=234 Identities=17% Similarity=0.213 Sum_probs=149.8
Q ss_pred HHHHHHHHHhhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccc
Q 003094 520 DRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSE 599 (848)
Q Consensus 520 ~~l~~l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~ 599 (848)
..+..+...+.+.++|++++++.+..++... .++||+||||||||++|++||..+.+.+ +|..+++..
T Consensus 9 ~~i~~l~~~l~~~i~gre~vI~lll~aalag-----------~hVLL~GpPGTGKT~LAraLa~~~~~~~-~F~~~~~~f 76 (498)
T PRK13531 9 ERISRLSSALEKGLYERSHAIRLCLLAALSG-----------ESVFLLGPPGIAKSLIARRLKFAFQNAR-AFEYLMTRF 76 (498)
T ss_pred HHHHHHHHHHhhhccCcHHHHHHHHHHHccC-----------CCEEEECCCChhHHHHHHHHHHHhcccC-cceeeeeee
Confidence 4567788899999999999998887777532 4699999999999999999999874333 666555542
Q ss_pred cccccchhcccCCCCCCcccccccchh----HHHHcCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecCCe
Q 003094 600 FMERHTVSKLIGSPPGYVGYTEGGQLT----EAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNT 675 (848)
Q Consensus 600 ~~~~~~~~~l~g~~~g~~g~~~~~~l~----~~~~~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~ 675 (848)
. ....++|...-+.... .+.+. +.+..+ .+||+|||+++++.+|+.|+++|+++.++. +++....+--
T Consensus 77 t----tp~DLfG~l~i~~~~~-~g~f~r~~~G~L~~A--~lLfLDEI~rasp~~QsaLLeam~Er~~t~-g~~~~~lp~r 148 (498)
T PRK13531 77 S----TPEEVFGPLSIQALKD-EGRYQRLTSGYLPEA--EIVFLDEIWKAGPAILNTLLTAINERRFRN-GAHEEKIPMR 148 (498)
T ss_pred c----CcHHhcCcHHHhhhhh-cCchhhhcCCccccc--cEEeecccccCCHHHHHHHHHHHHhCeEec-CCeEEeCCCc
Confidence 2 1346666421111100 11111 111112 299999999999999999999999999986 5666666666
Q ss_pred EEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCC-HHHHHHHHHHHH-
Q 003094 676 LLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLT-KLEVKEIADIML- 753 (848)
Q Consensus 676 iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~-~~el~~I~~~~l- 753 (848)
+|+++||.-.. ...|.+++++||-..+..++++ .++..+++....
T Consensus 149 fiv~ATN~LPE---------------------------------~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~~~ 195 (498)
T PRK13531 149 LLVTASNELPE---------------------------------ADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQD 195 (498)
T ss_pred EEEEECCCCcc---------------------------------cCCchHHhHhhEEEEEECCCCCchHHHHHHHHcccc
Confidence 66777772110 1235689999995568889997 456566764321
Q ss_pred --------------HHHHHHHhcCCCeEeecHHHHHHHHHccC-----C--CCCCchHHHHHHHHHHHHHHHHHHHccc
Q 003094 754 --------------KEVFDRLKTKDIELQVTERFRERVVEEGY-----N--PSYGARPLRRAIMRLLEDSMAEKMLARE 811 (848)
Q Consensus 754 --------------~~~~~~~~~~~~~l~i~~~a~~~l~~~~~-----~--~~~g~r~L~~~i~~~l~~~l~~~~l~~~ 811 (848)
+++ ..+...-..+.+++.+.++|.+... . +..+-|.. ..++.-+-+.|++.++
T Consensus 196 ~~~~~~~~~~vis~eel-~~lq~~v~~V~v~d~v~eyI~~L~~~lr~~r~~~~~SpR~~----~~l~~~akA~A~l~GR 269 (498)
T PRK13531 196 ENDNPVPASLQITDEEY-QQWQKEIGKITLPDHVFELIFQLRQQLDALPNAPYVSDRRW----KKAIRLLQASAFFSGR 269 (498)
T ss_pred cccCCCcccCCCCHHHH-HHHHHHhcceeCCHHHHHHHHHHHHHHhcCCCCCCcCcHHH----HHHHHHHHHHHHHCCC
Confidence 111 1222222456788998888877421 1 11223322 2355555566677654
No 220
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.53 E-value=7.8e-14 Score=155.21 Aligned_cols=206 Identities=21% Similarity=0.301 Sum_probs=134.6
Q ss_pred HHHhhccccChHHHHHHHHHHHHHHH--------ccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecc
Q 003094 526 EETLHKRVIGQDEAVKAISRAIRRAR--------VGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDM 597 (848)
Q Consensus 526 ~~~l~~~vigq~~~~~~l~~~~~~~~--------~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~ 597 (848)
.+..++++.|.+..++.+...+.... .|+. +..++||+||||||||++|+++|+.+ +.+++.+.+
T Consensus 117 p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~----~p~gvLL~GppGtGKT~lakaia~~l---~~~~~~v~~ 189 (364)
T TIGR01242 117 PNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIE----PPKGVLLYGPPGTGKTLLAKAVAHET---NATFIRVVG 189 (364)
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCC----CCceEEEECCCCCCHHHHHHHHHHhC---CCCEEecch
Confidence 34456789999999999998886442 1222 22359999999999999999999987 567777766
Q ss_pred cccccccchhcccCCCCCCccccc--ccchhHHHHcCCCeEEEEcCCCcC-----------ChHHHHHHHhhhcCcEEEc
Q 003094 598 SEFMERHTVSKLIGSPPGYVGYTE--GGQLTEAVRRRPYTVVLFDEIEKA-----------HPDVFNMMLQILEDGRLTD 664 (848)
Q Consensus 598 ~~~~~~~~~~~l~g~~~g~~g~~~--~~~l~~~~~~~~~~Vl~lDEid~l-----------~~~~~~~Ll~~le~g~~~~ 664 (848)
+.+... |.|... ...++..++...++||||||+|.+ .+.++..+.+++..-.-.
T Consensus 190 ~~l~~~------------~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~- 256 (364)
T TIGR01242 190 SELVRK------------YIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGF- 256 (364)
T ss_pred HHHHHH------------hhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCC-
Confidence 554321 333221 133455566667799999999987 234555666665331100
Q ss_pred CCCceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhh--hccCeEEEcCCCCH
Q 003094 665 SKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFL--NRLDEMIVFRQLTK 742 (848)
Q Consensus 665 ~~g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll--~R~d~~i~f~~l~~ 742 (848)
....+++||+|||... .++++++ +|||..|.|++|+.
T Consensus 257 -----~~~~~v~vI~ttn~~~------------------------------------~ld~al~r~grfd~~i~v~~P~~ 295 (364)
T TIGR01242 257 -----DPRGNVKVIAATNRPD------------------------------------ILDPALLRPGRFDRIIEVPLPDF 295 (364)
T ss_pred -----CCCCCEEEEEecCChh------------------------------------hCChhhcCcccCceEEEeCCcCH
Confidence 0124778999998432 2456776 49999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHHHHHHHHHH
Q 003094 743 LEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSMA 804 (848)
Q Consensus 743 ~el~~I~~~~l~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~l~~~l~ 804 (848)
++..+|+...+... ...-.++ +..|+. ....+..++++..+..+...++.
T Consensus 296 ~~r~~Il~~~~~~~-------~l~~~~~---~~~la~--~t~g~sg~dl~~l~~~A~~~a~~ 345 (364)
T TIGR01242 296 EGRLEILKIHTRKM-------KLAEDVD---LEAIAK--MTEGASGADLKAICTEAGMFAIR 345 (364)
T ss_pred HHHHHHHHHHHhcC-------CCCccCC---HHHHHH--HcCCCCHHHHHHHHHHHHHHHHH
Confidence 99999997655331 1111122 345555 34456778888777666555443
No 221
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.53 E-value=8e-14 Score=162.88 Aligned_cols=206 Identities=17% Similarity=0.264 Sum_probs=133.1
Q ss_pred HHHHHHhhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCC------CceEEec
Q 003094 523 LKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSE------EAMIRLD 596 (848)
Q Consensus 523 ~~l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~------~~~i~i~ 596 (848)
.+++...+.+++||+.++..|.+.+...+ -..++||+||+|+|||++|+++|+.+++.. .++..++
T Consensus 8 ~kyRP~~f~~liGq~~i~~~L~~~l~~~r--------l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~ 79 (620)
T PRK14948 8 HKYRPQRFDELVGQEAIATTLKNALISNR--------IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCE 79 (620)
T ss_pred HHhCCCcHhhccChHHHHHHHHHHHHcCC--------CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccH
Confidence 45666778899999999999988887532 123599999999999999999999997632 1221111
Q ss_pred -ccccccccchhcccC-CCCCCcccccccchhHHHHc----CCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCcee
Q 003094 597 -MSEFMERHTVSKLIG-SPPGYVGYTEGGQLTEAVRR----RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTV 670 (848)
Q Consensus 597 -~~~~~~~~~~~~l~g-~~~g~~g~~~~~~l~~~~~~----~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v 670 (848)
|..+....... ++. ......+....+.+.+.+.. +.+.|+||||+|.++...+|.|++.||+-
T Consensus 80 ~C~~i~~g~h~D-~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEeP---------- 148 (620)
T PRK14948 80 LCRAIAAGNALD-VIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEP---------- 148 (620)
T ss_pred HHHHHhcCCCcc-EEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcC----------
Confidence 11111110000 000 00011122122233333332 44679999999999999999999999972
Q ss_pred ecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHH
Q 003094 671 DFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIAD 750 (848)
Q Consensus 671 ~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~ 750 (848)
..+++||++|+.... +.+.+++|| ..+.|.+++.+++...+.
T Consensus 149 -p~~tvfIL~t~~~~~------------------------------------llpTIrSRc-~~~~f~~l~~~ei~~~L~ 190 (620)
T PRK14948 149 -PPRVVFVLATTDPQR------------------------------------VLPTIISRC-QRFDFRRIPLEAMVQHLS 190 (620)
T ss_pred -CcCeEEEEEeCChhh------------------------------------hhHHHHhhe-eEEEecCCCHHHHHHHHH
Confidence 357788888862221 347899999 899999999998887776
Q ss_pred HHHHHHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHHH
Q 003094 751 IMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMR 797 (848)
Q Consensus 751 ~~l~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~ 797 (848)
..+.+ ..+.++++++..|+...- ++.|...+.+++
T Consensus 191 ~ia~k---------egi~is~~al~~La~~s~---G~lr~A~~lLek 225 (620)
T PRK14948 191 EIAEK---------ESIEIEPEALTLVAQRSQ---GGLRDAESLLDQ 225 (620)
T ss_pred HHHHH---------hCCCCCHHHHHHHHHHcC---CCHHHHHHHHHH
Confidence 55543 124478888888887421 234444444443
No 222
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.53 E-value=2.2e-13 Score=159.88 Aligned_cols=200 Identities=21% Similarity=0.222 Sum_probs=145.4
Q ss_pred hhhhhhhcCCCCCccCChHHHHHHHHHhccCCCCC-cEEECCCCCcHHHHHHHHHHHhhCCCC-CC--------------
Q 003094 186 NLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNN-PCLIGEPGVGKTAIAEGLAQRIASGDV-PD-------------- 249 (848)
Q Consensus 186 ~l~~~~~~~~ld~iiG~~~~~~~l~~~l~~~~~~~-iLL~GppGtGKT~la~~la~~l~~~~~-~~-------------- 249 (848)
.|.+++||.+|++++|++..++.|...+..+...| +||+||+|+|||++++.+|+.+.+... +.
T Consensus 5 ~l~~kyRP~~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~ 84 (585)
T PRK14950 5 VLYRKWRSQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIA 84 (585)
T ss_pred HHHHHhCCCCHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHh
Confidence 47799999999999999999999999888766666 589999999999999999999875321 00
Q ss_pred CCCCceEEEEeCCcccccccccchHHHHHHHHHHHHHh----CCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcC--
Q 003094 250 TIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQ----SDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR-- 323 (848)
Q Consensus 250 ~l~~~~v~~~~~~~l~~~~~~~g~~~~~l~~l~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~-- 323 (848)
...+..++.++.+... + ...++.+.+.+.. +...|+||||+|.|. .+..+.|+..++.
T Consensus 85 ~~~~~d~~~i~~~~~~------~--vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~--------~~a~naLLk~LEepp 148 (585)
T PRK14950 85 EGSAVDVIEMDAASHT------S--VDDAREIIERVQFRPALARYKVYIIDEVHMLS--------TAAFNALLKTLEEPP 148 (585)
T ss_pred cCCCCeEEEEeccccC------C--HHHHHHHHHHHhhCcccCCeEEEEEeChHhCC--------HHHHHHHHHHHhcCC
Confidence 0012234455432111 1 1234444444332 345699999999984 3467788888874
Q ss_pred CceEEEEeeChHHHHhhhhcChhhhcccCCCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCC
Q 003094 324 GELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRF 403 (848)
Q Consensus 324 ~~v~vI~atn~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~ 403 (848)
...++|.+++..+ .+.+.+.+|+..+.|+.++.++...++...+. ..++.++++++..++..+.+.
T Consensus 149 ~~tv~Il~t~~~~-----kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~----~egl~i~~eal~~La~~s~Gd----- 214 (585)
T PRK14950 149 PHAIFILATTEVH-----KVPATILSRCQRFDFHRHSVADMAAHLRKIAA----AEGINLEPGALEAIARAATGS----- 214 (585)
T ss_pred CCeEEEEEeCChh-----hhhHHHHhccceeeCCCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHcCCC-----
Confidence 4567777776554 46788999999999999999999888887766 357788999999999887653
Q ss_pred ChhhHHHHHHHHh
Q 003094 404 LPDKAIDLIDEAG 416 (848)
Q Consensus 404 ~p~~a~~ll~~a~ 416 (848)
+..++..|+...
T Consensus 215 -lr~al~~LekL~ 226 (585)
T PRK14950 215 -MRDAENLLQQLA 226 (585)
T ss_pred -HHHHHHHHHHHH
Confidence 445777777643
No 223
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=3.8e-14 Score=139.55 Aligned_cols=166 Identities=27% Similarity=0.419 Sum_probs=122.8
Q ss_pred HHHhhccccChHHHHHHHHHHHHHH--------HccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecc
Q 003094 526 EETLHKRVIGQDEAVKAISRAIRRA--------RVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDM 597 (848)
Q Consensus 526 ~~~l~~~vigq~~~~~~l~~~~~~~--------~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~ 597 (848)
.+...+.+-|.+..++.|.+.+... ..|+..| .+ +|||||||||||.+|+++|.+. +..|+++..
T Consensus 142 PDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQP---KG-vlLygppgtGktLlaraVahht---~c~firvsg 214 (404)
T KOG0728|consen 142 PDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQP---KG-VLLYGPPGTGKTLLARAVAHHT---DCTFIRVSG 214 (404)
T ss_pred CccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCC---cc-eEEecCCCCchhHHHHHHHhhc---ceEEEEech
Confidence 3344556788888888888877543 1344444 33 8999999999999999999886 678999888
Q ss_pred cccccccchhcccCCCCCCccccc--ccchhHHHHcCCCeEEEEcCCCcCC-----------hHHHHHHHhhhc---CcE
Q 003094 598 SEFMERHTVSKLIGSPPGYVGYTE--GGQLTEAVRRRPYTVVLFDEIEKAH-----------PDVFNMMLQILE---DGR 661 (848)
Q Consensus 598 ~~~~~~~~~~~l~g~~~g~~g~~~--~~~l~~~~~~~~~~Vl~lDEid~l~-----------~~~~~~Ll~~le---~g~ 661 (848)
+++... |.|+.. .+.+|-.++...++|||.||||++. .++|..++.++. ..+
T Consensus 215 selvqk------------~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfe 282 (404)
T KOG0728|consen 215 SELVQK------------YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFE 282 (404)
T ss_pred HHHHHH------------HhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccc
Confidence 887543 444322 2557777888889999999999873 357777766663 323
Q ss_pred EEcCCCceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhh--hccCeEEEcCC
Q 003094 662 LTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFL--NRLDEMIVFRQ 739 (848)
Q Consensus 662 ~~~~~g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll--~R~d~~i~f~~ 739 (848)
. .+|+-+|++||.-. .++|+|+ +|+|..|.|+|
T Consensus 283 a---------tknikvimatnrid------------------------------------ild~allrpgridrkiefp~ 317 (404)
T KOG0728|consen 283 A---------TKNIKVIMATNRID------------------------------------ILDPALLRPGRIDRKIEFPP 317 (404)
T ss_pred c---------ccceEEEEeccccc------------------------------------cccHhhcCCCcccccccCCC
Confidence 2 37889999998322 3567777 79999999999
Q ss_pred CCHHHHHHHHHHHHHH
Q 003094 740 LTKLEVKEIADIMLKE 755 (848)
Q Consensus 740 l~~~el~~I~~~~l~~ 755 (848)
++++...+|++..-.+
T Consensus 318 p~e~ar~~ilkihsrk 333 (404)
T KOG0728|consen 318 PNEEARLDILKIHSRK 333 (404)
T ss_pred CCHHHHHHHHHHhhhh
Confidence 9999999998655444
No 224
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.53 E-value=2.8e-13 Score=140.42 Aligned_cols=119 Identities=25% Similarity=0.366 Sum_probs=90.2
Q ss_pred CeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHH
Q 003094 634 YTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKS 713 (848)
Q Consensus 634 ~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~ 713 (848)
++||||||++.++-+.+..|.+.||+--- .++|++||.|-..|.. .+ .+.++
T Consensus 292 pGVLFIDEvHmLDIE~FsFlnrAlEse~a------------PIii~AtNRG~~kiRG------Td-----~~sPh----- 343 (450)
T COG1224 292 PGVLFIDEVHMLDIECFSFLNRALESELA------------PIIILATNRGMTKIRG------TD-----IESPH----- 343 (450)
T ss_pred cceEEEechhhhhHHHHHHHHHHhhcccC------------cEEEEEcCCceeeecc------cC-----CcCCC-----
Confidence 57999999999999999999999998442 3899999987654422 00 01111
Q ss_pred HHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHH
Q 003094 714 LVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRR 793 (848)
Q Consensus 714 ~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~~~l~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~ 793 (848)
-++.+|++|+ -+|...||+.+++++|+.....+ ..+.++++++++|.+.|. ...||-
T Consensus 344 --------GIP~DlLDRl-lII~t~py~~~EireIi~iRa~e---------e~i~l~~~Ale~L~~ig~-----etSLRY 400 (450)
T COG1224 344 --------GIPLDLLDRL-LIISTRPYSREEIREIIRIRAKE---------EDIELSDDALEYLTDIGE-----ETSLRY 400 (450)
T ss_pred --------CCCHhhhhhe-eEEecCCCCHHHHHHHHHHhhhh---------hccccCHHHHHHHHhhch-----hhhHHH
Confidence 2688999999 99999999999999999776655 457799999999999532 456766
Q ss_pred HHHHHHHHHHH
Q 003094 794 AIMRLLEDSMA 804 (848)
Q Consensus 794 ~i~~~l~~~l~ 804 (848)
+++ ++.++.-
T Consensus 401 a~q-LL~pa~i 410 (450)
T COG1224 401 AVQ-LLTPASI 410 (450)
T ss_pred HHH-hccHHHH
Confidence 665 5554443
No 225
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.52 E-value=8.9e-13 Score=147.45 Aligned_cols=211 Identities=24% Similarity=0.340 Sum_probs=141.1
Q ss_pred CCccCChHHHHHHHHHhcc----CCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCccccc-----
Q 003094 197 DPVVGRQPQIERVVQILGR----RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAG----- 267 (848)
Q Consensus 197 d~iiG~~~~~~~l~~~l~~----~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~----- 267 (848)
+.++||++++++|...+.. ..+.+++|+||||||||++++.+++.+........ ....++++++......
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~-~~~~~v~in~~~~~~~~~~~~ 93 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRD-VRVVTVYVNCQILDTLYQVLV 93 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccC-CceEEEEEECCCCCCHHHHHH
Confidence 5799999999998888753 55678999999999999999999998753110000 0156778887543321
Q ss_pred ----------cc--ccc-hHHHHHHHHHHHHHh-CCCeEEEEcccchhhhCCCCCchHHHHHHHhhh-----hcCCceEE
Q 003094 268 ----------TK--YRG-EFEERLKKLMEEIKQ-SDEIILFIDEVHTLIGAGAAEGAIDAANILKPS-----LARGELQC 328 (848)
Q Consensus 268 ----------~~--~~g-~~~~~l~~l~~~~~~-~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~-----l~~~~v~v 328 (848)
.+ ..+ ...+.+..+++.+.. ..+.||+|||+|.+.+. ..++...|..+ .....+.+
T Consensus 94 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~-----~~~~L~~l~~~~~~~~~~~~~v~l 168 (365)
T TIGR02928 94 ELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGD-----DDDLLYQLSRARSNGDLDNAKVGV 168 (365)
T ss_pred HHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccC-----CcHHHHhHhccccccCCCCCeEEE
Confidence 00 011 122334445555443 45789999999999732 11233333333 12367889
Q ss_pred EEeeChHHHHhhhhcChhhhcccC--CCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCChh
Q 003094 329 IGATTLDEYRKHIEKDPALERRFQ--PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPD 406 (848)
Q Consensus 329 I~atn~~~~~~~~~~d~al~~Rf~--~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~p~ 406 (848)
|+++|..++.. .+++.+.+||. .|.|++++.++..+|++..++.. .....++++++..++..+....++ ++
T Consensus 169 I~i~n~~~~~~--~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~--~~~~~~~~~~l~~i~~~~~~~~Gd---~R 241 (365)
T TIGR02928 169 IGISNDLKFRE--NLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKA--FYDGVLDDGVIPLCAALAAQEHGD---AR 241 (365)
T ss_pred EEEECCcchHh--hcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhh--ccCCCCChhHHHHHHHHHHHhcCC---HH
Confidence 99998876532 47889999994 79999999999999999877521 123357788888777766544343 66
Q ss_pred hHHHHHHHHhhHHH
Q 003094 407 KAIDLIDEAGSRVR 420 (848)
Q Consensus 407 ~a~~ll~~a~~~~~ 420 (848)
.++++++.|...+.
T Consensus 242 ~al~~l~~a~~~a~ 255 (365)
T TIGR02928 242 KAIDLLRVAGEIAE 255 (365)
T ss_pred HHHHHHHHHHHHHH
Confidence 78888888765443
No 226
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=1.2e-13 Score=161.53 Aligned_cols=206 Identities=19% Similarity=0.293 Sum_probs=135.5
Q ss_pred HHHHHHHhhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCC-----CceEE-e
Q 003094 522 LLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSE-----EAMIR-L 595 (848)
Q Consensus 522 l~~l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~-----~~~i~-i 595 (848)
..++++..+++|+||+.+++.|.+.+...+ ..+.+||+||+|+|||++|+++|+.+.+.. .++-. -
T Consensus 8 ~~kyRP~~f~~viGq~~~~~~L~~~i~~~~--------l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~ 79 (614)
T PRK14971 8 ARKYRPSTFESVVGQEALTTTLKNAIATNK--------LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECE 79 (614)
T ss_pred HHHHCCCCHHHhcCcHHHHHHHHHHHHcCC--------CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcch
Confidence 346777788999999999999998887432 223489999999999999999999986432 11111 1
Q ss_pred cccccccccc--hhcccCCCCCCcccccccchhHHHHc----CCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCce
Q 003094 596 DMSEFMERHT--VSKLIGSPPGYVGYTEGGQLTEAVRR----RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRT 669 (848)
Q Consensus 596 ~~~~~~~~~~--~~~l~g~~~g~~g~~~~~~l~~~~~~----~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~ 669 (848)
.|..+..... +..+-+. +..+.+....+.+.+.. +.+.|++|||+|.++.+.++.|+++||+
T Consensus 80 sC~~~~~~~~~n~~~ld~~--~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEe---------- 147 (614)
T PRK14971 80 SCVAFNEQRSYNIHELDAA--SNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEE---------- 147 (614)
T ss_pred HHHHHhcCCCCceEEeccc--ccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhC----------
Confidence 1222211110 1111111 11111111222222232 3467999999999999999999999998
Q ss_pred eecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHH
Q 003094 670 VDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIA 749 (848)
Q Consensus 670 v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~ 749 (848)
+..+++||++|+... .+.+.+++|| .++.|.+++.+++...+
T Consensus 148 -pp~~tifIL~tt~~~------------------------------------kIl~tI~SRc-~iv~f~~ls~~ei~~~L 189 (614)
T PRK14971 148 -PPSYAIFILATTEKH------------------------------------KILPTILSRC-QIFDFNRIQVADIVNHL 189 (614)
T ss_pred -CCCCeEEEEEeCCch------------------------------------hchHHHHhhh-heeecCCCCHHHHHHHH
Confidence 235778888886222 2457899999 88999999999999888
Q ss_pred HHHHHHHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHHH
Q 003094 750 DIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMR 797 (848)
Q Consensus 750 ~~~l~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~ 797 (848)
...+.+ ..+.++++++++|+..+- .+.|.+.+.+++
T Consensus 190 ~~ia~~---------egi~i~~~al~~La~~s~---gdlr~al~~Lek 225 (614)
T PRK14971 190 QYVASK---------EGITAEPEALNVIAQKAD---GGMRDALSIFDQ 225 (614)
T ss_pred HHHHHH---------cCCCCCHHHHHHHHHHcC---CCHHHHHHHHHH
Confidence 776654 235588999999988421 334444444433
No 227
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.51 E-value=1.7e-13 Score=152.75 Aligned_cols=205 Identities=19% Similarity=0.307 Sum_probs=131.6
Q ss_pred HHHHHHhhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCC----ceEE-ecc
Q 003094 523 LKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEE----AMIR-LDM 597 (848)
Q Consensus 523 ~~l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~----~~i~-i~~ 597 (848)
+++++..+++++||+.+++.+.+.+... +....+||+||||+|||++|+.+++.+.+... ++.. ..|
T Consensus 6 ~~~rp~~~~~iig~~~~~~~l~~~~~~~--------~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c 77 (355)
T TIGR02397 6 RKYRPQTFEDVIGQEHIVQTLKNAIKNG--------RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESC 77 (355)
T ss_pred HHhCCCcHhhccCcHHHHHHHHHHHHcC--------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 3456667889999999999999888642 22245899999999999999999999865421 1110 001
Q ss_pred ccccccc--chhcccCCCCCCcccccccchhHHHHc----CCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceee
Q 003094 598 SEFMERH--TVSKLIGSPPGYVGYTEGGQLTEAVRR----RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVD 671 (848)
Q Consensus 598 ~~~~~~~--~~~~l~g~~~g~~g~~~~~~l~~~~~~----~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~ 671 (848)
..+.... .+..+-+. +..+......+.+.+.. +++.||+|||+|.++...++.|++.+++.
T Consensus 78 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~----------- 144 (355)
T TIGR02397 78 KEINSGSSLDVIEIDAA--SNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEP----------- 144 (355)
T ss_pred HHHhcCCCCCEEEeecc--ccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCC-----------
Confidence 1110000 00000010 01111111223333333 34579999999999999999999999872
Q ss_pred cCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHHH
Q 003094 672 FKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADI 751 (848)
Q Consensus 672 ~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~~ 751 (848)
..+++||+++|... .+.+.+.+|+ ..+.|++++.+++.+++..
T Consensus 145 ~~~~~lIl~~~~~~------------------------------------~l~~~l~sr~-~~~~~~~~~~~~l~~~l~~ 187 (355)
T TIGR02397 145 PEHVVFILATTEPH------------------------------------KIPATILSRC-QRFDFKRIPLEDIVERLKK 187 (355)
T ss_pred ccceeEEEEeCCHH------------------------------------HHHHHHHhhe-eEEEcCCCCHHHHHHHHHH
Confidence 25678888875211 1346788999 7899999999999998877
Q ss_pred HHHHHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHHH
Q 003094 752 MLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMR 797 (848)
Q Consensus 752 ~l~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~ 797 (848)
.+.+ .| +.++++++++|++..- .+.|.+.+.+++
T Consensus 188 ~~~~-------~g--~~i~~~a~~~l~~~~~---g~~~~a~~~lek 221 (355)
T TIGR02397 188 ILDK-------EG--IKIEDEALELIARAAD---GSLRDALSLLDQ 221 (355)
T ss_pred HHHH-------cC--CCCCHHHHHHHHHHcC---CChHHHHHHHHH
Confidence 7754 13 4588999999988421 234555555544
No 228
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=1.2e-13 Score=161.98 Aligned_cols=206 Identities=17% Similarity=0.267 Sum_probs=133.4
Q ss_pred HHHHHHhhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCC-----ceEEe-c
Q 003094 523 LKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEE-----AMIRL-D 596 (848)
Q Consensus 523 ~~l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~-----~~i~i-~ 596 (848)
++++...+++|+||+.+++.|.+.+...+ ..+.+||+||+|+|||++|+.+|+.+.+... ++-.+ .
T Consensus 8 ~kyRP~~~~eiiGq~~~~~~L~~~i~~~~--------i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~ 79 (585)
T PRK14950 8 RKWRSQTFAELVGQEHVVQTLRNAIAEGR--------VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEM 79 (585)
T ss_pred HHhCCCCHHHhcCCHHHHHHHHHHHHhCC--------CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHH
Confidence 56777888999999999999988887432 1234799999999999999999999864321 11111 1
Q ss_pred ccccccccchhcc-cCCCCCCcccccccchhHHHHc----CCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceee
Q 003094 597 MSEFMERHTVSKL-IGSPPGYVGYTEGGQLTEAVRR----RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVD 671 (848)
Q Consensus 597 ~~~~~~~~~~~~l-~g~~~g~~g~~~~~~l~~~~~~----~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~ 671 (848)
|..+........+ +.. ....+.+..+.+.+.+.. +.+.||||||+|.++.+.+|.|++.||+.
T Consensus 80 c~~i~~~~~~d~~~i~~-~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEep----------- 147 (585)
T PRK14950 80 CRAIAEGSAVDVIEMDA-ASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEP----------- 147 (585)
T ss_pred HHHHhcCCCCeEEEEec-cccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcC-----------
Confidence 1122111111000 000 011222222223333332 44679999999999999999999999983
Q ss_pred cCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHHH
Q 003094 672 FKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADI 751 (848)
Q Consensus 672 ~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~~ 751 (848)
..+++||++++... .+.+.+.+|| ..+.|.+++.+++..++..
T Consensus 148 p~~tv~Il~t~~~~------------------------------------kll~tI~SR~-~~i~f~~l~~~el~~~L~~ 190 (585)
T PRK14950 148 PPHAIFILATTEVH------------------------------------KVPATILSRC-QRFDFHRHSVADMAAHLRK 190 (585)
T ss_pred CCCeEEEEEeCChh------------------------------------hhhHHHHhcc-ceeeCCCCCHHHHHHHHHH
Confidence 24678888775211 1346788999 7899999999999888866
Q ss_pred HHHHHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHHH
Q 003094 752 MLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMR 797 (848)
Q Consensus 752 ~l~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~ 797 (848)
.+.+ ..+.++++++..|+...- ++.|.+.+.+++
T Consensus 191 ~a~~---------egl~i~~eal~~La~~s~---Gdlr~al~~Lek 224 (585)
T PRK14950 191 IAAA---------EGINLEPGALEAIARAAT---GSMRDAENLLQQ 224 (585)
T ss_pred HHHH---------cCCCCCHHHHHHHHHHcC---CCHHHHHHHHHH
Confidence 6543 224588999999987421 234555555554
No 229
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.51 E-value=4.7e-13 Score=157.17 Aligned_cols=212 Identities=21% Similarity=0.242 Sum_probs=143.5
Q ss_pred hhhhhhhhcCCCCCccCChHHHHHHHHHhccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcc
Q 003094 185 TNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLL 264 (848)
Q Consensus 185 ~~l~~~~~~~~ld~iiG~~~~~~~l~~~l~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l 264 (848)
.++.+.+||..|++++|++..++++...+....+.+++|+||||||||++|+.+++..........-.+.+++.+++..+
T Consensus 142 ~~~~~~~rp~~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l 221 (615)
T TIGR02903 142 KSAQSLLRPRAFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTL 221 (615)
T ss_pred hHHhhhcCcCcHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhc
Confidence 45777889999999999999999998888877888999999999999999999987663211111112456888887654
Q ss_pred ccccc-----ccchHH----HHHHHHHHH----------HHhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCC-
Q 003094 265 VAGTK-----YRGEFE----ERLKKLMEE----------IKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARG- 324 (848)
Q Consensus 265 ~~~~~-----~~g~~~----~~l~~l~~~----------~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~- 324 (848)
..... ..+... ......+.. +....+.+|||||++.|. ...+..|...++.+
T Consensus 222 ~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld--------~~~Q~~Ll~~Le~~~ 293 (615)
T TIGR02903 222 RWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELD--------PLLQNKLLKVLEDKR 293 (615)
T ss_pred cCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCC--------HHHHHHHHHHHhhCe
Confidence 21100 011000 001111111 112235699999999884 33555555555432
Q ss_pred -----------------------------ceEEEEeeChHHHHhhhhcChhhhcccCCCcCCCCCHHHHHHHHHHHHHHH
Q 003094 325 -----------------------------ELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERY 375 (848)
Q Consensus 325 -----------------------------~v~vI~atn~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~Il~~~~~~~ 375 (848)
.+++|++|+.... .++++|.+||..+.|++++.++..+|++..+.+
T Consensus 294 v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~----~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~- 368 (615)
T TIGR02903 294 VEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPE----EINPALRSRCAEVFFEPLTPEDIALIVLNAAEK- 368 (615)
T ss_pred EEeecceeccCCcccchhhhhhcccCccceEEEEEecccccc----ccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHH-
Confidence 3677777765432 578999999998999999999999999988774
Q ss_pred hhhhcCCCChHHHHHHHhhhhcccccCCChhhHHHHHHHHhhHH
Q 003094 376 EIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRV 419 (848)
Q Consensus 376 ~~~~~~~~s~~~l~~l~~~s~~~~~~~~~p~~a~~ll~~a~~~~ 419 (848)
.++.++++++..+...+. . .++++..|..++..+
T Consensus 369 ---~~v~ls~eal~~L~~ys~----~---gRraln~L~~~~~~~ 402 (615)
T TIGR02903 369 ---INVHLAAGVEELIARYTI----E---GRKAVNILADVYGYA 402 (615)
T ss_pred ---cCCCCCHHHHHHHHHCCC----c---HHHHHHHHHHHHHHH
Confidence 355688888888877543 1 246777777665443
No 230
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.50 E-value=3.4e-13 Score=145.74 Aligned_cols=234 Identities=17% Similarity=0.187 Sum_probs=137.6
Q ss_pred hccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcC------CCCceEEec----ccc
Q 003094 530 HKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFG------SEEAMIRLD----MSE 599 (848)
Q Consensus 530 ~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~------~~~~~i~i~----~~~ 599 (848)
+..|+||+++++.+.-++... + .+|+||.|+||||||++|++++..+.. ....+..+. +..
T Consensus 7 f~~i~Gq~~~~~~l~~~~~~~--~-------~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~~~~ 77 (334)
T PRK13407 7 FSAIVGQEEMKQAMVLTAIDP--G-------IGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWAH 77 (334)
T ss_pred HHHhCCHHHHHHHHHHHHhcc--C-------CCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCccccc
Confidence 467899999988777543211 1 246999999999999999999999831 111111111 100
Q ss_pred ---------------cccccchhcccCCCCCCccccccc--chhHHHHcCCCeEEEEcCCCcCChHHHHHHHhhhcCcEE
Q 003094 600 ---------------FMERHTVSKLIGSPPGYVGYTEGG--QLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRL 662 (848)
Q Consensus 600 ---------------~~~~~~~~~l~g~~~g~~g~~~~~--~l~~~~~~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~ 662 (848)
+....+...++|...-...-..++ .-.+.+.++.+++||+||++.+++.+|+.|++.|+++.+
T Consensus 78 ~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~~~q~~Lle~mee~~v 157 (334)
T PRK13407 78 VSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLEDHIVDLLLDVAQSGEN 157 (334)
T ss_pred ccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCHHHHHHHHHHHHcCCe
Confidence 000011122344210000000000 112234456778999999999999999999999999874
Q ss_pred Ec-CCCceee-cCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCC
Q 003094 663 TD-SKGRTVD-FKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQL 740 (848)
Q Consensus 663 ~~-~~g~~v~-~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l 740 (848)
+- ..|.... ..++++|+|+|... ..+++++++||...+.+.++
T Consensus 158 ~v~r~G~~~~~p~rfiviAt~NP~e-----------------------------------~~l~~aLldRF~~~v~v~~~ 202 (334)
T PRK13407 158 VVEREGLSIRHPARFVLVGSGNPEE-----------------------------------GELRPQLLDRFGLSVEVRSP 202 (334)
T ss_pred EEEECCeEEecCCCEEEEecCCccc-----------------------------------CCCCHHHHhhcceEEEcCCC
Confidence 31 2233333 34778888887422 12678999999877888877
Q ss_pred CH-HHHHHHHHHHHHH------H--------------HHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHHHHH
Q 003094 741 TK-LEVKEIADIMLKE------V--------------FDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLL 799 (848)
Q Consensus 741 ~~-~el~~I~~~~l~~------~--------------~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~l 799 (848)
+. ++..+|+...... + ....+..-..+.+++++++++++.+.... ....+-.+. ++
T Consensus 203 ~~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~--~~s~Ra~i~-l~ 279 (334)
T PRK13407 203 RDVETRVEVIRRRDAYDADHDAFMAKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIALG--SDGLRGELT-LL 279 (334)
T ss_pred CcHHHHHHHHHHhhcccccchhhhccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHC--CCCchHHHH-HH
Confidence 66 6767777653211 1 01112222456799999999988532211 112333444 66
Q ss_pred HHHHHHHHHcc
Q 003094 800 EDSMAEKMLAR 810 (848)
Q Consensus 800 ~~~l~~~~l~~ 810 (848)
.-+-+.+++.+
T Consensus 280 ~aA~a~A~l~G 290 (334)
T PRK13407 280 RAARALAAFEG 290 (334)
T ss_pred HHHHHHHHHcC
Confidence 66666777765
No 231
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.49 E-value=2.2e-13 Score=167.25 Aligned_cols=190 Identities=15% Similarity=0.152 Sum_probs=124.2
Q ss_pred ceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccch---hcc--cCC-----------------------
Q 003094 561 IASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTV---SKL--IGS----------------------- 612 (848)
Q Consensus 561 ~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~---~~l--~g~----------------------- 612 (848)
..++||+||||||||.+|+++|... +.||+.+.++++.+.... ... +|.
T Consensus 1630 PKGILLiGPPGTGKTlLAKALA~es---~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~n 1706 (2281)
T CHL00206 1630 SRGILVIGSIGTGRSYLVKYLATNS---YVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMMN 1706 (2281)
T ss_pred CCceEEECCCCCCHHHHHHHHHHhc---CCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhhcc
Confidence 3469999999999999999999987 899999999998753100 000 010
Q ss_pred -CCCCcccccc----cchhHHHHcCCCeEEEEcCCCcCChH-----HHHHHHhhhcCcEEEcCCCceeecCCeEEEEecC
Q 003094 613 -PPGYVGYTEG----GQLTEAVRRRPYTVVLFDEIEKAHPD-----VFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSN 682 (848)
Q Consensus 613 -~~g~~g~~~~----~~l~~~~~~~~~~Vl~lDEid~l~~~-----~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN 682 (848)
..++.+..++ ..+++.+++..+|||||||||.+... .++.|+..|+..... ....+++||++||
T Consensus 1707 ~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~~------~s~~~VIVIAATN 1780 (2281)
T CHL00206 1707 ALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCER------CSTRNILVIASTH 1780 (2281)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCccceehHHHHHHHhcccccc------CCCCCEEEEEeCC
Confidence 0111222222 34688888899999999999999753 478888888752110 1225789999999
Q ss_pred CCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhh--ccCeEEEcCCCCHHHHHHHHHHHHHHHHHHH
Q 003094 683 VGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLN--RLDEMIVFRQLTKLEVKEIADIMLKEVFDRL 760 (848)
Q Consensus 683 ~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~--R~d~~i~f~~l~~~el~~I~~~~l~~~~~~~ 760 (848)
.+.. ++|+|+. |||..|.++.|+..+..+++...+..
T Consensus 1781 RPD~------------------------------------LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~t----- 1819 (2281)
T CHL00206 1781 IPQK------------------------------------VDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYT----- 1819 (2281)
T ss_pred Cccc------------------------------------CCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhh-----
Confidence 6553 6799994 99999999988877767666543311
Q ss_pred hcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHHHHHHHHHH
Q 003094 761 KTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSMA 804 (848)
Q Consensus 761 ~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~l~~~l~ 804 (848)
++..+.-+..-++.++. ..+.+.+++|...+..++.-++.
T Consensus 1820 --kg~~L~~~~vdl~~LA~--~T~GfSGADLanLvNEAaliAir 1859 (2281)
T CHL00206 1820 --RGFHLEKKMFHTNGFGS--ITMGSNARDLVALTNEALSISIT 1859 (2281)
T ss_pred --cCCCCCcccccHHHHHH--hCCCCCHHHHHHHHHHHHHHHHH
Confidence 12222111111345555 45566777787777666554433
No 232
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.49 E-value=4.2e-12 Score=143.55 Aligned_cols=208 Identities=23% Similarity=0.277 Sum_probs=140.5
Q ss_pred CCCccCChHHHHHHHHHhc----cCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccc-----
Q 003094 196 LDPVVGRQPQIERVVQILG----RRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVA----- 266 (848)
Q Consensus 196 ld~iiG~~~~~~~l~~~l~----~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~----- 266 (848)
.+.++||++++++|...+. ...+.+++|+||||+|||++++.+++.+.... .+..++++++.....
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~-----~~~~~v~in~~~~~~~~~~~ 103 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIA-----VKVVYVYINCQIDRTRYAIF 103 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhc-----CCcEEEEEECCcCCCHHHHH
Confidence 3568999999999888763 34567899999999999999999999885432 146678888754321
Q ss_pred --------c--ccccc-hHHHHHHHHHHHHHh-CCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhc---CCceEEEEe
Q 003094 267 --------G--TKYRG-EFEERLKKLMEEIKQ-SDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLA---RGELQCIGA 331 (848)
Q Consensus 267 --------~--~~~~g-~~~~~l~~l~~~~~~-~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~---~~~v~vI~a 331 (848)
+ ....+ .....+..+.+.+.. ..+.||+|||+|.+.... + .+....|...++ ..++.+|++
T Consensus 104 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~---~-~~~l~~l~~~~~~~~~~~v~vI~i 179 (394)
T PRK00411 104 SEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKE---G-NDVLYSLLRAHEEYPGARIGVIGI 179 (394)
T ss_pred HHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccC---C-chHHHHHHHhhhccCCCeEEEEEE
Confidence 0 00111 223334444444443 346899999999997211 1 122333333322 336888999
Q ss_pred eChHHHHhhhhcChhhhcccC--CCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCChhhHH
Q 003094 332 TTLDEYRKHIEKDPALERRFQ--PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAI 409 (848)
Q Consensus 332 tn~~~~~~~~~~d~al~~Rf~--~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~p~~a~ 409 (848)
+|..+... .+++.+.+||. .|.|++++.++..+|++..++. ......+++++++.+++.+.+..++ .+.++
T Consensus 180 ~~~~~~~~--~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~--~~~~~~~~~~~l~~i~~~~~~~~Gd---~r~a~ 252 (394)
T PRK00411 180 SSDLTFLY--ILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEE--GFYPGVVDDEVLDLIADLTAREHGD---ARVAI 252 (394)
T ss_pred ECCcchhh--hcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHh--hcccCCCCHhHHHHHHHHHHHhcCc---HHHHH
Confidence 88766543 36888988884 7899999999999999987653 1223457889999999888665444 56677
Q ss_pred HHHHHHhhHH
Q 003094 410 DLIDEAGSRV 419 (848)
Q Consensus 410 ~ll~~a~~~~ 419 (848)
+++..|...+
T Consensus 253 ~ll~~a~~~a 262 (394)
T PRK00411 253 DLLRRAGLIA 262 (394)
T ss_pred HHHHHHHHHH
Confidence 8887775444
No 233
>PHA02244 ATPase-like protein
Probab=99.49 E-value=2.7e-12 Score=137.65 Aligned_cols=172 Identities=17% Similarity=0.215 Sum_probs=115.8
Q ss_pred hccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhcc
Q 003094 530 HKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 609 (848)
Q Consensus 530 ~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l 609 (848)
....+|+...+......+.++... . .++||+||||||||++|+++|..+ +.+|+.++. +.+ ...+
T Consensus 95 d~~~ig~sp~~~~~~~ri~r~l~~-~------~PVLL~GppGtGKTtLA~aLA~~l---g~pfv~In~--l~d---~~~L 159 (383)
T PHA02244 95 DTTKIASNPTFHYETADIAKIVNA-N------IPVFLKGGAGSGKNHIAEQIAEAL---DLDFYFMNA--IMD---EFEL 159 (383)
T ss_pred CCcccCCCHHHHHHHHHHHHHHhc-C------CCEEEECCCCCCHHHHHHHHHHHh---CCCEEEEec--ChH---HHhh
Confidence 345667777776665555443221 1 238999999999999999999987 678888873 211 2233
Q ss_pred cCCCCCCcccccccchhHHHHcCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCchhhh
Q 003094 610 IGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIE 689 (848)
Q Consensus 610 ~g~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~i~ 689 (848)
.|... ..|.-..+.+..+++ .+++|||||++.++++++..|..+++++.+...++......++.+|+|+|....
T Consensus 160 ~G~i~-~~g~~~dgpLl~A~~--~GgvLiLDEId~a~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~--- 233 (383)
T PHA02244 160 KGFID-ANGKFHETPFYEAFK--KGGLFFIDEIDASIPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGK--- 233 (383)
T ss_pred ccccc-ccccccchHHHHHhh--cCCEEEEeCcCcCCHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCcc---
Confidence 44211 111112244555554 467999999999999999999999999988877777667789999999995321
Q ss_pred ccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHH
Q 003094 690 KGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEV 745 (848)
Q Consensus 690 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el 745 (848)
|+..... -...+++++++|| ..|.|..+++.|.
T Consensus 234 ------G~~~~y~----------------G~k~L~~AllDRF-v~I~~dyp~~~E~ 266 (383)
T PHA02244 234 ------GADHIYV----------------ARNKIDGATLDRF-APIEFDYDEKIEH 266 (383)
T ss_pred ------CcccccC----------------CCcccCHHHHhhc-EEeeCCCCcHHHH
Confidence 0000000 0123689999999 7899988875443
No 234
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.49 E-value=1.3e-13 Score=134.65 Aligned_cols=178 Identities=17% Similarity=0.283 Sum_probs=123.8
Q ss_pred HHHHHHHHhhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCC--CCceEEeccc
Q 003094 521 RLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGS--EEAMIRLDMS 598 (848)
Q Consensus 521 ~l~~l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~--~~~~i~i~~~ 598 (848)
.+.++++....+++|.++.++.+.-..+. +..++++|.||||||||+.+.++|+.+.|. ...+..+|.+
T Consensus 17 wVeKYrP~~l~dIVGNe~tv~rl~via~~---------gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNAS 87 (333)
T KOG0991|consen 17 WVEKYRPSVLQDIVGNEDTVERLSVIAKE---------GNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNAS 87 (333)
T ss_pred HHHhhCchHHHHhhCCHHHHHHHHHHHHc---------CCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCc
Confidence 45677888888999999999998877663 233469999999999999999999999773 3445555555
Q ss_pred ccccccchhcccCCCCCCcccccccchhHHHHc------CCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeec
Q 003094 599 EFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRR------RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDF 672 (848)
Q Consensus 599 ~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~------~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~ 672 (848)
+-.+-+.+. ..+..++++ +.+.||++||+|++...+|.+|.+.||-..
T Consensus 88 deRGIDvVR---------------n~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQQAlRRtMEiyS----------- 141 (333)
T KOG0991|consen 88 DERGIDVVR---------------NKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRRTMEIYS----------- 141 (333)
T ss_pred cccccHHHH---------------HHHHHHHHhhccCCCCceeEEEeeccchhhhHHHHHHHHHHHHHc-----------
Confidence 432211111 222233322 345799999999999999999999998643
Q ss_pred CCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHHHH
Q 003094 673 KNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIM 752 (848)
Q Consensus 673 ~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~~~ 752 (848)
+.++|.+++|...++| .++-+|| .++.|..++..++..-+...
T Consensus 142 ~ttRFalaCN~s~KIi------------------------------------EPIQSRC-AiLRysklsd~qiL~Rl~~v 184 (333)
T KOG0991|consen 142 NTTRFALACNQSEKII------------------------------------EPIQSRC-AILRYSKLSDQQILKRLLEV 184 (333)
T ss_pred ccchhhhhhcchhhhh------------------------------------hhHHhhh-HhhhhcccCHHHHHHHHHHH
Confidence 5679999999766655 3466777 77777777776654433322
Q ss_pred HHHHHHHHhcCCCeEeecHHHHHHHHH
Q 003094 753 LKEVFDRLKTKDIELQVTERFRERVVE 779 (848)
Q Consensus 753 l~~~~~~~~~~~~~l~i~~~a~~~l~~ 779 (848)
.+ +..+.++++.++.+.-
T Consensus 185 ~k---------~Ekv~yt~dgLeaiif 202 (333)
T KOG0991|consen 185 AK---------AEKVNYTDDGLEAIIF 202 (333)
T ss_pred HH---------HhCCCCCcchHHHhhh
Confidence 22 2334466666666654
No 235
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.49 E-value=3.6e-13 Score=145.59 Aligned_cols=234 Identities=16% Similarity=0.176 Sum_probs=138.8
Q ss_pred hccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCC----CceE------------
Q 003094 530 HKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSE----EAMI------------ 593 (848)
Q Consensus 530 ~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~----~~~i------------ 593 (848)
+..|+||++++..|...+... ..+.+||.||+|||||++||++++.+...+ .+|.
T Consensus 16 f~~ivGq~~~k~al~~~~~~p---------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~p~~~~~~ 86 (350)
T CHL00081 16 FTAIVGQEEMKLALILNVIDP---------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSDPELMSDE 86 (350)
T ss_pred HHHHhChHHHHHHHHHhccCC---------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCChhhhchh
Confidence 567999999988877666532 234699999999999999999999874211 2232
Q ss_pred ----------------EecccccccccchhcccCCCCCCcccccc--cchhHHHHcCCCeEEEEcCCCcCChHHHHHHHh
Q 003094 594 ----------------RLDMSEFMERHTVSKLIGSPPGYVGYTEG--GQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQ 655 (848)
Q Consensus 594 ----------------~i~~~~~~~~~~~~~l~g~~~g~~g~~~~--~~l~~~~~~~~~~Vl~lDEid~l~~~~~~~Ll~ 655 (848)
...+..+....+..+|+|.-.-......+ ..-.+.+.++.+++||+||++.+++.+|+.|++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~~~Q~~LLe 166 (350)
T CHL00081 87 VREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDILLD 166 (350)
T ss_pred hhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCHHHHHHHHH
Confidence 00000000011222233321000000000 001223446778999999999999999999999
Q ss_pred hhcCcEEEc-CCCceee-cCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCe
Q 003094 656 ILEDGRLTD-SKGRTVD-FKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDE 733 (848)
Q Consensus 656 ~le~g~~~~-~~g~~v~-~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~ 733 (848)
.|++|..+- ..|.... ..++++|+|.|... ..|+++|++||..
T Consensus 167 am~e~~~~ier~G~s~~~p~rfiviaT~np~e-----------------------------------g~l~~~LldRf~l 211 (350)
T CHL00081 167 SAASGWNTVEREGISIRHPARFVLVGSGNPEE-----------------------------------GELRPQLLDRFGM 211 (350)
T ss_pred HHHhCCeEEeeCCeeeecCCCEEEEeccCccc-----------------------------------CCCCHHHHHHhCc
Confidence 999865432 1233222 34677777777321 1378999999988
Q ss_pred EEEcCCCC-HHHHHHHHHHHHHHH-----------------HHH---HhcCCCeEeecHHHHHHHHHccCCCC-CCchHH
Q 003094 734 MIVFRQLT-KLEVKEIADIMLKEV-----------------FDR---LKTKDIELQVTERFRERVVEEGYNPS-YGARPL 791 (848)
Q Consensus 734 ~i~f~~l~-~~el~~I~~~~l~~~-----------------~~~---~~~~~~~l~i~~~a~~~l~~~~~~~~-~g~r~L 791 (848)
.+.+..++ .++-.+|++.....- .++ .+..-..+.+++++++++++.+.... -|-|
T Consensus 212 ~i~l~~~~~~~~e~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~R-- 289 (350)
T CHL00081 212 HAEIRTVKDPELRVKIVEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLR-- 289 (350)
T ss_pred eeecCCCCChHHHHHHHHhhhccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCCh--
Confidence 88898887 477677776543210 011 11222457799999999988532211 1222
Q ss_pred HHHHHHHHHHHHHHHHHccc
Q 003094 792 RRAIMRLLEDSMAEKMLARE 811 (848)
Q Consensus 792 ~~~i~~~l~~~l~~~~l~~~ 811 (848)
+-..++.-+-+.+.+.+.
T Consensus 290 --a~i~l~raArA~Aal~GR 307 (350)
T CHL00081 290 --GDIVTNRAAKALAAFEGR 307 (350)
T ss_pred --HHHHHHHHHHHHHHHcCC
Confidence 223355666666666653
No 236
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.49 E-value=2.8e-13 Score=143.32 Aligned_cols=112 Identities=24% Similarity=0.334 Sum_probs=75.6
Q ss_pred CeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHH
Q 003094 634 YTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKS 713 (848)
Q Consensus 634 ~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~ 713 (848)
++||||||++.++.+.+..|.++||..-- .++|++||.+...+.... ...+
T Consensus 279 pGVLFIDEvHmLDiEcFsfLnralEs~~s------------PiiIlATNRg~~~irGt~-----------~~sp------ 329 (398)
T PF06068_consen 279 PGVLFIDEVHMLDIECFSFLNRALESELS------------PIIILATNRGITKIRGTD-----------IISP------ 329 (398)
T ss_dssp E-EEEEESGGGSBHHHHHHHHHHHTSTT--------------EEEEEES-SEEE-BTTS------------EEE------
T ss_pred cceEEecchhhccHHHHHHHHHHhcCCCC------------cEEEEecCceeeeccCcc-----------CcCC------
Confidence 57999999999999999999999997442 389999998776443211 0001
Q ss_pred HHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHH
Q 003094 714 LVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRR 793 (848)
Q Consensus 714 ~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~~~l~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~ 793 (848)
..++.+|++|| -+|...||+++|+.+|+...++. ..+.+++++++.|...+. ...||-
T Consensus 330 -------hGiP~DlLDRl-lII~t~py~~~ei~~Il~iR~~~---------E~v~i~~~al~~L~~ig~-----~~SLRY 387 (398)
T PF06068_consen 330 -------HGIPLDLLDRL-LIIRTKPYSEEEIKQILKIRAKE---------EDVEISEDALDLLTKIGV-----ETSLRY 387 (398)
T ss_dssp -------TT--HHHHTTE-EEEEE----HHHHHHHHHHHHHH---------CT--B-HHHHHHHHHHHH-----HS-HHH
T ss_pred -------CCCCcchHhhc-EEEECCCCCHHHHHHHHHhhhhh---------hcCcCCHHHHHHHHHHhh-----hccHHH
Confidence 12688999999 99999999999999999877765 567799999999998533 244655
Q ss_pred HHH
Q 003094 794 AIM 796 (848)
Q Consensus 794 ~i~ 796 (848)
+++
T Consensus 388 Aiq 390 (398)
T PF06068_consen 388 AIQ 390 (398)
T ss_dssp HHH
T ss_pred HHH
Confidence 555
No 237
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.48 E-value=3.4e-13 Score=149.38 Aligned_cols=176 Identities=20% Similarity=0.214 Sum_probs=123.0
Q ss_pred CCCCccCChHHHHHHHHHhccCC----------CCCcEEECCCCCcHHHHHHHHHHHhhCCCCC-------------CCC
Q 003094 195 KLDPVVGRQPQIERVVQILGRRT----------KNNPCLIGEPGVGKTAIAEGLAQRIASGDVP-------------DTI 251 (848)
Q Consensus 195 ~ld~iiG~~~~~~~l~~~l~~~~----------~~~iLL~GppGtGKT~la~~la~~l~~~~~~-------------~~l 251 (848)
.|++++|++..++.|...+..+. +..+||+||||+|||++|+.+|+.+.+.... ...
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~ 82 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAG 82 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcC
Confidence 47889999999999999988753 4458899999999999999999998764311 001
Q ss_pred CCceEEEEeCCcccccccccchHHHHHHHHHHHHHh----CCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcC---C
Q 003094 252 EGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQ----SDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR---G 324 (848)
Q Consensus 252 ~~~~v~~~~~~~l~~~~~~~g~~~~~l~~l~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~---~ 324 (848)
....+..+...... . ....++.+++.+.. ++..|+||||+|.+.+ ...+.|++.++. +
T Consensus 83 ~hpD~~~i~~~~~~-----i--~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~--------~aanaLLk~LEep~~~ 147 (394)
T PRK07940 83 THPDVRVVAPEGLS-----I--GVDEVRELVTIAARRPSTGRWRIVVIEDADRLTE--------RAANALLKAVEEPPPR 147 (394)
T ss_pred CCCCEEEecccccc-----C--CHHHHHHHHHHHHhCcccCCcEEEEEechhhcCH--------HHHHHHHHHhhcCCCC
Confidence 12234444332111 1 12345666666543 3456999999999943 367888888884 4
Q ss_pred ceEEEEeeChHHHHhhhhcChhhhcccCCCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccc
Q 003094 325 ELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYIS 400 (848)
Q Consensus 325 ~v~vI~atn~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~ 400 (848)
.++|++|++ ++ .+.|.++|||..+.|++|+.++..+++.. + ..++++....++.++.|.+.
T Consensus 148 ~~fIL~a~~-~~-----~llpTIrSRc~~i~f~~~~~~~i~~~L~~---~------~~~~~~~a~~la~~s~G~~~ 208 (394)
T PRK07940 148 TVWLLCAPS-PE-----DVLPTIRSRCRHVALRTPSVEAVAEVLVR---R------DGVDPETARRAARASQGHIG 208 (394)
T ss_pred CeEEEEECC-hH-----HChHHHHhhCeEEECCCCCHHHHHHHHHH---h------cCCCHHHHHHHHHHcCCCHH
Confidence 445555555 44 58999999999999999999987776652 1 12567777788888877643
No 238
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.48 E-value=7.7e-13 Score=147.78 Aligned_cols=195 Identities=19% Similarity=0.298 Sum_probs=131.8
Q ss_pred HHHHHHhhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCC-------ceEEe
Q 003094 523 LKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEE-------AMIRL 595 (848)
Q Consensus 523 ~~l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~-------~~i~i 595 (848)
.++++..+++++||+.+++.+.+.+... +...++||+||||+|||++|+++++.+.+... ++..+
T Consensus 9 ~k~rP~~~~~iig~~~~~~~l~~~i~~~--------~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~ 80 (367)
T PRK14970 9 RKYRPQTFDDVVGQSHITNTLLNAIENN--------HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIF 80 (367)
T ss_pred HHHCCCcHHhcCCcHHHHHHHHHHHHcC--------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceE
Confidence 4566777889999999999888888642 22246999999999999999999999854221 11111
Q ss_pred cccccccccchhcccCCCCCCcccccccchhHHHHc----CCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceee
Q 003094 596 DMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRR----RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVD 671 (848)
Q Consensus 596 ~~~~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~----~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~ 671 (848)
++.. .+..+......+.+.+.. +++.||+|||+|.++...++.|++.+++.
T Consensus 81 ~l~~--------------~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~----------- 135 (367)
T PRK14970 81 ELDA--------------ASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEP----------- 135 (367)
T ss_pred Eecc--------------ccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCC-----------
Confidence 1100 001111111222222222 34579999999999999999999999872
Q ss_pred cCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHHH
Q 003094 672 FKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADI 751 (848)
Q Consensus 672 ~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~~ 751 (848)
..+++||++++... .+.+++.+|| .++.|.+++.+++..++..
T Consensus 136 ~~~~~~Il~~~~~~------------------------------------kl~~~l~sr~-~~v~~~~~~~~~l~~~l~~ 178 (367)
T PRK14970 136 PAHAIFILATTEKH------------------------------------KIIPTILSRC-QIFDFKRITIKDIKEHLAG 178 (367)
T ss_pred CCceEEEEEeCCcc------------------------------------cCCHHHHhcc-eeEecCCccHHHHHHHHHH
Confidence 24667888775222 2457888999 7899999999999988877
Q ss_pred HHHHHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHHHHH
Q 003094 752 MLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLL 799 (848)
Q Consensus 752 ~l~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~l 799 (848)
.+.+ ..+.++++++++|+... ..+.|.+.+.+++++
T Consensus 179 ~~~~---------~g~~i~~~al~~l~~~~---~gdlr~~~~~lekl~ 214 (367)
T PRK14970 179 IAVK---------EGIKFEDDALHIIAQKA---DGALRDALSIFDRVV 214 (367)
T ss_pred HHHH---------cCCCCCHHHHHHHHHhC---CCCHHHHHHHHHHHH
Confidence 6654 23458999999999841 134555555555443
No 239
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.48 E-value=7.2e-13 Score=145.34 Aligned_cols=177 Identities=22% Similarity=0.367 Sum_probs=122.9
Q ss_pred HHHHHHhhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCC--ceEEeccccc
Q 003094 523 LKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEE--AMIRLDMSEF 600 (848)
Q Consensus 523 ~~l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~--~~i~i~~~~~ 600 (848)
+++++.-+++++|++++++.+...+... . ..+++|+||||||||++++.+++.+++.+. +++.++++..
T Consensus 9 ~kyrP~~~~~~~g~~~~~~~l~~~i~~~-------~--~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~ 79 (319)
T PRK00440 9 EKYRPRTLDEIVGQEEIVERLKSYVKEK-------N--MPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDE 79 (319)
T ss_pred hhhCCCcHHHhcCcHHHHHHHHHHHhCC-------C--CCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccc
Confidence 3455566677899999999888877531 1 125899999999999999999999865432 3444433321
Q ss_pred ccccchhcccCCCCCCcccccccchhHHHHc-----CCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecCCe
Q 003094 601 MERHTVSKLIGSPPGYVGYTEGGQLTEAVRR-----RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNT 675 (848)
Q Consensus 601 ~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~-----~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~ 675 (848)
...... ...+.+.... .+..||+|||+|.++...++.|+++++... .++
T Consensus 80 ~~~~~~---------------~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~-----------~~~ 133 (319)
T PRK00440 80 RGIDVI---------------RNKIKEFARTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYS-----------QNT 133 (319)
T ss_pred cchHHH---------------HHHHHHHHhcCCCCCCCceEEEEeCcccCCHHHHHHHHHHHhcCC-----------CCC
Confidence 110000 0111222221 335699999999999999999999998632 456
Q ss_pred EEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHHHHHHH
Q 003094 676 LLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKE 755 (848)
Q Consensus 676 iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~~~l~~ 755 (848)
.+|+++|.... +.+++.+|+ .++.|+|++.+++..++...+.+
T Consensus 134 ~lIl~~~~~~~------------------------------------l~~~l~sr~-~~~~~~~l~~~ei~~~l~~~~~~ 176 (319)
T PRK00440 134 RFILSCNYSSK------------------------------------IIDPIQSRC-AVFRFSPLKKEAVAERLRYIAEN 176 (319)
T ss_pred eEEEEeCCccc------------------------------------cchhHHHHh-heeeeCCCCHHHHHHHHHHHHHH
Confidence 78888863322 235678898 67999999999999888776654
Q ss_pred HHHHHhcCCCeEeecHHHHHHHHHc
Q 003094 756 VFDRLKTKDIELQVTERFRERVVEE 780 (848)
Q Consensus 756 ~~~~~~~~~~~l~i~~~a~~~l~~~ 780 (848)
..+.++++++++|+..
T Consensus 177 ---------~~~~i~~~al~~l~~~ 192 (319)
T PRK00440 177 ---------EGIEITDDALEAIYYV 192 (319)
T ss_pred ---------cCCCCCHHHHHHHHHH
Confidence 1245899999999984
No 240
>PRK06893 DNA replication initiation factor; Validated
Probab=99.47 E-value=9.4e-13 Score=136.60 Aligned_cols=180 Identities=13% Similarity=0.156 Sum_probs=115.3
Q ss_pred cCCCCCccCChHHH--HHHHHHhccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccccccc
Q 003094 193 EGKLDPVVGRQPQI--ERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKY 270 (848)
Q Consensus 193 ~~~ld~iiG~~~~~--~~l~~~l~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~~~ 270 (848)
+.+||+++|.++.. ..+.+.......+.++|+||||||||++++++++.+... +..+.++++....
T Consensus 12 ~~~fd~f~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~-------~~~~~y~~~~~~~----- 79 (229)
T PRK06893 12 DETLDNFYADNNLLLLDSLRKNFIDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLN-------QRTAIYIPLSKSQ----- 79 (229)
T ss_pred cccccccccCChHHHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc-------CCCeEEeeHHHhh-----
Confidence 45788888665422 223333333233446899999999999999999987542 3345566553221
Q ss_pred cchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCCceE-EEEeeChHHHHhhhhcChhhhc
Q 003094 271 RGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQ-CIGATTLDEYRKHIEKDPALER 349 (848)
Q Consensus 271 ~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~~v~-vI~atn~~~~~~~~~~d~al~~ 349 (848)
.....+++.+.+. -+|+|||++.+.+. ......+.+.+....+.+..+ +++++..+.... ...+.+.+
T Consensus 80 -----~~~~~~~~~~~~~--dlLilDDi~~~~~~--~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~--~~~~~L~s 148 (229)
T PRK06893 80 -----YFSPAVLENLEQQ--DLVCLDDLQAVIGN--EEWELAIFDLFNRIKEQGKTLLLISADCSPHALS--IKLPDLAS 148 (229)
T ss_pred -----hhhHHHHhhcccC--CEEEEeChhhhcCC--hHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHcc--ccchhHHH
Confidence 1112333333333 39999999998532 111223455555555555544 444444444211 23589999
Q ss_pred ccC---CCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhccc
Q 003094 350 RFQ---PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYI 399 (848)
Q Consensus 350 Rf~---~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~ 399 (848)
|+. .+.+++|+.+++.+|++..+. ..++.++++++.++++.+.+-.
T Consensus 149 Rl~~g~~~~l~~pd~e~~~~iL~~~a~----~~~l~l~~~v~~~L~~~~~~d~ 197 (229)
T PRK06893 149 RLTWGEIYQLNDLTDEQKIIVLQRNAY----QRGIELSDEVANFLLKRLDRDM 197 (229)
T ss_pred HHhcCCeeeCCCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHhccCCH
Confidence 985 788999999999999998776 3578999999999998776543
No 241
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=2.9e-13 Score=134.48 Aligned_cols=161 Identities=26% Similarity=0.434 Sum_probs=118.1
Q ss_pred ccccChHHHHHHHHHHHHH--------HHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEeccccccc
Q 003094 531 KRVIGQDEAVKAISRAIRR--------ARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFME 602 (848)
Q Consensus 531 ~~vigq~~~~~~l~~~~~~--------~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~ 602 (848)
.++-|-.+.++.+++.++. ...|+.+|+ .+|+|||||||||.+||++|+- .+.-|+++-.+++..
T Consensus 177 ~dvggckeqieklrevve~pll~perfv~lgidppk----gvllygppgtgktl~aravanr---tdacfirvigselvq 249 (435)
T KOG0729|consen 177 SDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPK----GVLLYGPPGTGKTLCARAVANR---TDACFIRVIGSELVQ 249 (435)
T ss_pred ccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCC----ceEEeCCCCCchhHHHHHHhcc---cCceEEeehhHHHHH
Confidence 4566666666666666543 245666654 3899999999999999999975 478899888888765
Q ss_pred ccchhcccCCCCCCcccccc--cchhHHHHcCCCeEEEEcCCCcC-----------ChHHHHHHHhhhcCcEEEcCCCce
Q 003094 603 RHTVSKLIGSPPGYVGYTEG--GQLTEAVRRRPYTVVLFDEIEKA-----------HPDVFNMMLQILEDGRLTDSKGRT 669 (848)
Q Consensus 603 ~~~~~~l~g~~~g~~g~~~~--~~l~~~~~~~~~~Vl~lDEid~l-----------~~~~~~~Ll~~le~g~~~~~~g~~ 669 (848)
. |+|+... +.+++.++...-|+|||||||.. +.++|..+|.++..-.-.|..
T Consensus 250 k------------yvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdpr--- 314 (435)
T KOG0729|consen 250 K------------YVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPR--- 314 (435)
T ss_pred H------------HhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCC---
Confidence 4 7765433 66888888888999999999976 346888888877431111221
Q ss_pred eecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhh--hccCeEEEcCCCCHHHHHH
Q 003094 670 VDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFL--NRLDEMIVFRQLTKLEVKE 747 (848)
Q Consensus 670 v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll--~R~d~~i~f~~l~~~el~~ 747 (848)
.|+-++|+||.+.. ++|+|+ +|+|..|.|.-++.+-...
T Consensus 315 ---gnikvlmatnrpdt------------------------------------ldpallrpgrldrkvef~lpdlegrt~ 355 (435)
T KOG0729|consen 315 ---GNIKVLMATNRPDT------------------------------------LDPALLRPGRLDRKVEFGLPDLEGRTH 355 (435)
T ss_pred ---CCeEEEeecCCCCC------------------------------------cCHhhcCCcccccceeccCCcccccce
Confidence 47889999996553 567777 7999999999888877777
Q ss_pred HHHHH
Q 003094 748 IADIM 752 (848)
Q Consensus 748 I~~~~ 752 (848)
|++..
T Consensus 356 i~kih 360 (435)
T KOG0729|consen 356 IFKIH 360 (435)
T ss_pred eEEEe
Confidence 76433
No 242
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.47 E-value=5.3e-14 Score=139.35 Aligned_cols=186 Identities=23% Similarity=0.305 Sum_probs=81.3
Q ss_pred hccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchh--
Q 003094 530 HKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVS-- 607 (848)
Q Consensus 530 ~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~-- 607 (848)
+.+|+||+.++..+.-+.. |. .++||+||||||||++|+.++..+- ++..-..-+...-.++.
T Consensus 2 f~dI~GQe~aKrAL~iAAa----G~-------h~lLl~GppGtGKTmlA~~l~~lLP----~l~~~e~le~~~i~s~~~~ 66 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAA----GG-------HHLLLIGPPGTGKTMLARRLPSLLP----PLTEEEALEVSKIYSVAGL 66 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHH----CC---------EEEES-CCCTHHHHHHHHHHCS------CCEECCESS--S-TT---
T ss_pred hhhhcCcHHHHHHHHHHHc----CC-------CCeEEECCCCCCHHHHHHHHHHhCC----CCchHHHhhhccccccccC
Confidence 4689999999776655443 32 3699999999999999999998762 11111111110000000
Q ss_pred ----cccCCCC-----------CCcccccccchhHHHHcCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEc--CCCcee
Q 003094 608 ----KLIGSPP-----------GYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTD--SKGRTV 670 (848)
Q Consensus 608 ----~l~g~~~-----------g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~--~~g~~v 670 (848)
.++..+| +.+|... ....+.+..++++|||+||+..+++++++.|++.||+|+++. .++...
T Consensus 67 ~~~~~~~~~~Pfr~phhs~s~~~liGgg~-~~~PGeislAh~GVLflDE~~ef~~~vld~Lr~ple~g~v~i~R~~~~~~ 145 (206)
T PF01078_consen 67 GPDEGLIRQRPFRAPHHSASEAALIGGGR-PPRPGEISLAHRGVLFLDELNEFDRSVLDALRQPLEDGEVTISRAGGSVT 145 (206)
T ss_dssp S---EEEE---EEEE-TT--HHHHHEEGG-GEEE-CGGGGTTSEEEECETTTS-HHHHHHHHHHHHHSBEEEEETTEEEE
T ss_pred CCCCceecCCCcccCCCCcCHHHHhCCCc-CCCcCHHHHhcCCEEEechhhhcCHHHHHHHHHHHHCCeEEEEECCceEE
Confidence 0000000 0001000 112345667899999999999999999999999999998654 334445
Q ss_pred ecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHH
Q 003094 671 DFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLE 744 (848)
Q Consensus 671 ~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~e 744 (848)
.+.++++|+|+|. +.||+-.+.. .... -...........+...|++|||-.+..++++.+|
T Consensus 146 ~Pa~f~lv~a~NP---------cpCG~~~~~~-~~C~---Cs~~~~~~Y~~rlsgpllDRiDi~v~~~~~~~~~ 206 (206)
T PF01078_consen 146 YPARFLLVAAMNP---------CPCGYYGDPD-NRCR---CSPRQIRRYQSRLSGPLLDRIDIHVEVPRVSYEE 206 (206)
T ss_dssp EB--EEEEEEE-S-------------------------------------------------------------
T ss_pred EecccEEEEEecc---------cccccccccc-cccc---ccccccccccccccccccccccccccccccccCC
Confidence 5569999999994 3344321100 0000 0000112223457889999999999998887654
No 243
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=6.5e-12 Score=137.88 Aligned_cols=211 Identities=20% Similarity=0.283 Sum_probs=150.7
Q ss_pred CCccCChHHHHHHHHHh----ccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccccc----
Q 003094 197 DPVVGRQPQIERVVQIL----GRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGT---- 268 (848)
Q Consensus 197 d~iiG~~~~~~~l~~~l----~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~---- 268 (848)
+.+.+|+.+++++...| ....+.|++++||||||||++++.+++++.... .+..++++||.......
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~-----~~~~~~yINc~~~~t~~~i~~ 91 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESS-----ANVEVVYINCLELRTPYQVLS 91 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhh-----ccCceEEEeeeeCCCHHHHHH
Confidence 44889999999877665 446778899999999999999999999996532 12337889885544311
Q ss_pred ---------cccch-HHHHHHHHHHHHHh-CCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhc-CCceEEEEeeChHH
Q 003094 269 ---------KYRGE-FEERLKKLMEEIKQ-SDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLA-RGELQCIGATTLDE 336 (848)
Q Consensus 269 ---------~~~g~-~~~~l~~l~~~~~~-~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~-~~~v~vI~atn~~~ 336 (848)
...|. ..+.+..+.+.... ....|+++||+|.|..... ..+..+++..-+ ..++.+|+.+|..+
T Consensus 92 ~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~----~~LY~L~r~~~~~~~~v~vi~i~n~~~ 167 (366)
T COG1474 92 KILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG----EVLYSLLRAPGENKVKVSIIAVSNDDK 167 (366)
T ss_pred HHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc----hHHHHHHhhccccceeEEEEEEeccHH
Confidence 11121 12233334444443 5678999999999986532 112222221111 34578999999887
Q ss_pred HHhhhhcChhhhcccC--CCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCChhhHHHHHHH
Q 003094 337 YRKHIEKDPALERRFQ--PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDE 414 (848)
Q Consensus 337 ~~~~~~~d~al~~Rf~--~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~p~~a~~ll~~ 414 (848)
+.. .++|.+.++|. .|.||+++.+|..+|+....+.. .....++++.++.++..+....++ .++|+++|+.
T Consensus 168 ~~~--~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~--~~~~~~~~~vl~lia~~~a~~~GD---AR~aidilr~ 240 (366)
T COG1474 168 FLD--YLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEG--FSAGVIDDDVLKLIAALVAAESGD---ARKAIDILRR 240 (366)
T ss_pred HHH--HhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhh--ccCCCcCccHHHHHHHHHHHcCcc---HHHHHHHHHH
Confidence 643 46999999995 78899999999999999877642 445578899999999888777765 7789999999
Q ss_pred HhhHHHHhh
Q 003094 415 AGSRVRLRH 423 (848)
Q Consensus 415 a~~~~~~~~ 423 (848)
|+..+....
T Consensus 241 A~eiAe~~~ 249 (366)
T COG1474 241 AGEIAEREG 249 (366)
T ss_pred HHHHHHhhC
Confidence 998887543
No 244
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.46 E-value=5.6e-13 Score=159.77 Aligned_cols=188 Identities=20% Similarity=0.323 Sum_probs=129.9
Q ss_pred CCC-CccCChHHHHHHHHHhcc------CCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCccccc
Q 003094 195 KLD-PVVGRQPQIERVVQILGR------RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAG 267 (848)
Q Consensus 195 ~ld-~iiG~~~~~~~l~~~l~~------~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~ 267 (848)
.|| ++.|.+++++++.+.+.. .....++|+||||+|||++++.+|+.+ +.+++.++++.....
T Consensus 319 ~l~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l----------~~~~~~i~~~~~~d~ 388 (784)
T PRK10787 319 ILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT----------GRKYVRMALGGVRDE 388 (784)
T ss_pred HhhhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEEcCCCCCH
Confidence 355 499999999999887663 334568899999999999999999988 456777776554321
Q ss_pred -------ccccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcC-----------------
Q 003094 268 -------TKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR----------------- 323 (848)
Q Consensus 268 -------~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~----------------- 323 (848)
..|.|.....+...+..+....| |++|||+|.+.+.... +..+.|..+++.
T Consensus 389 ~~i~g~~~~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~~g----~~~~aLlevld~~~~~~~~d~~~~~~~dl 463 (784)
T PRK10787 389 AEIRGHRRTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMRG----DPASALLEVLDPEQNVAFSDHYLEVDYDL 463 (784)
T ss_pred HHhccchhccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcccccCC----CHHHHHHHHhccccEEEEecccccccccC
Confidence 12444444444444444333334 7899999999644221 234555555542
Q ss_pred CceEEEEeeChHHHHhhhhcChhhhcccCCCcCCCCCHHHHHHHHHHHHH-HHhhh-----hcCCCChHHHHHHHhhhhc
Q 003094 324 GELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRE-RYEIH-----HKLRYTDEALVSAAQLSYQ 397 (848)
Q Consensus 324 ~~v~vI~atn~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~Il~~~~~-~~~~~-----~~~~~s~~~l~~l~~~s~~ 397 (848)
+++++|+|+|.. .++++|++||..|.++.++.++..+|.+.++. +.... ..+.++++++..+++....
T Consensus 464 s~v~~i~TaN~~------~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~ 537 (784)
T PRK10787 464 SDVMFVATSNSM------NIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTR 537 (784)
T ss_pred CceEEEEcCCCC------CCCHHHhcceeeeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCc
Confidence 678899988764 48999999999999999999999999988763 22111 2456889999888864333
Q ss_pred ccccCC
Q 003094 398 YISDRF 403 (848)
Q Consensus 398 ~~~~~~ 403 (848)
..+.|-
T Consensus 538 e~GaR~ 543 (784)
T PRK10787 538 EAGVRS 543 (784)
T ss_pred ccCCcH
Confidence 334333
No 245
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.46 E-value=9.7e-13 Score=155.65 Aligned_cols=201 Identities=17% Similarity=0.193 Sum_probs=127.5
Q ss_pred hccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhc-----------------------
Q 003094 530 HKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYF----------------------- 586 (848)
Q Consensus 530 ~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~----------------------- 586 (848)
+..|+||+.++..+..+.... ..+++||.||+|||||++|++|++.+-
T Consensus 3 f~~ivGq~~~~~al~~~av~~---------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~ 73 (633)
T TIGR02442 3 FTAIVGQEDLKLALLLNAVDP---------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEE 73 (633)
T ss_pred cchhcChHHHHHHHHHHhhCC---------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChh
Confidence 457999999987665444321 124699999999999999999999872
Q ss_pred ---------CCCCceEEecccccccccchhcccCCCCCC----cccccccchhHHHHcCCCeEEEEcCCCcCChHHHHHH
Q 003094 587 ---------GSEEAMIRLDMSEFMERHTVSKLIGSPPGY----VGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMM 653 (848)
Q Consensus 587 ---------~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~----~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~~~~~L 653 (848)
....+|+.+.++. +...|+|...-. .|.. ..-.+.+..+.++|||||||+.+++.+|+.|
T Consensus 74 ~~~~~~~~~~~~~pfv~~p~~~-----t~~~l~G~~d~~~~l~~g~~--~~~~G~L~~A~~GiL~lDEi~~l~~~~q~~L 146 (633)
T TIGR02442 74 CRRKYRPSEQRPVPFVNLPLGA-----TEDRVVGSLDIERALREGEK--AFQPGLLAEAHRGILYIDEVNLLDDHLVDVL 146 (633)
T ss_pred hhhcccccccCCCCeeeCCCCC-----cHHHcCCcccHHHHhhcCCe--eecCcceeecCCCeEEeChhhhCCHHHHHHH
Confidence 0123444443332 122344431100 0000 0112344567889999999999999999999
Q ss_pred HhhhcCcE--EEcCCCceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhcc
Q 003094 654 LQILEDGR--LTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRL 731 (848)
Q Consensus 654 l~~le~g~--~~~~~g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~ 731 (848)
+++|++|. ++..+.......++++|+|+|... ..|+++|++||
T Consensus 147 l~~le~g~~~v~r~g~~~~~~~~~~lIat~np~e-----------------------------------g~l~~~L~dR~ 191 (633)
T TIGR02442 147 LDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEE-----------------------------------GDLRPQLLDRF 191 (633)
T ss_pred HHHHhcCCEEEEECCceeeecCCeEEEEecCCCC-----------------------------------CCCCHHHHhhc
Confidence 99999985 343333333446889999988321 12678999999
Q ss_pred CeEEEcCCCC-HHHHHHHHHHHHH----------H-------HHHH---HhcCCCeEeecHHHHHHHHHcc
Q 003094 732 DEMIVFRQLT-KLEVKEIADIMLK----------E-------VFDR---LKTKDIELQVTERFRERVVEEG 781 (848)
Q Consensus 732 d~~i~f~~l~-~~el~~I~~~~l~----------~-------~~~~---~~~~~~~l~i~~~a~~~l~~~~ 781 (848)
+..|.+.++. .++..+++...+. . +... .+..-..+.++++++++|.+..
T Consensus 192 ~l~i~v~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~~~~V~is~~~~~~l~~~~ 262 (633)
T TIGR02442 192 GLCVDVAAPRDPEERVEIIRRRLAFDADPEAFAARWAAEQEELRNRIARARSLLPSVRISDSLIRFISELC 262 (633)
T ss_pred ceEEEccCCCchHHHHHHHHHHHhhccCcHHHHHHhhhhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 8777777664 4555666654332 0 0011 1111234678999999998853
No 246
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.46 E-value=1.5e-12 Score=144.93 Aligned_cols=186 Identities=25% Similarity=0.344 Sum_probs=125.3
Q ss_pred ccCChHHHHHHHHHhcc----------------CCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCC
Q 003094 199 VVGRQPQIERVVQILGR----------------RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMG 262 (848)
Q Consensus 199 iiG~~~~~~~l~~~l~~----------------~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~ 262 (848)
++|++..++.|...+.. ....|+||+||||||||++|+.+|+.+ +.+++.++++
T Consensus 73 ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l----------~~pf~~id~~ 142 (412)
T PRK05342 73 VIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL----------DVPFAIADAT 142 (412)
T ss_pred eeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh----------CCCceecchh
Confidence 89999999987554411 135789999999999999999999988 4668888887
Q ss_pred cccccccccch-HHHHHHHHHHH----HHhCCCeEEEEcccchhhhCCCC------CchHHHHHHHhhhhcCC-------
Q 003094 263 LLVAGTKYRGE-FEERLKKLMEE----IKQSDEIILFIDEVHTLIGAGAA------EGAIDAANILKPSLARG------- 324 (848)
Q Consensus 263 ~l~~~~~~~g~-~~~~l~~l~~~----~~~~~~~IL~IDEid~l~~~~~~------~~~~~~~~~L~~~l~~~------- 324 (848)
.+.. ..|.|. .+..+..++.. +....++||||||+|.+...+.. .+...+++.|+.+|+..
T Consensus 143 ~l~~-~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~ 221 (412)
T PRK05342 143 TLTE-AGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQ 221 (412)
T ss_pred hccc-CCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCC
Confidence 6643 335564 33334444432 23456789999999999765221 12235788888888621
Q ss_pred --------ceEEEEeeCh---------------------------------------HHHHh--------hhhcChhhhc
Q 003094 325 --------ELQCIGATTL---------------------------------------DEYRK--------HIEKDPALER 349 (848)
Q Consensus 325 --------~v~vI~atn~---------------------------------------~~~~~--------~~~~d~al~~ 349 (848)
.+++|.|+|. ..... .+.+.|+|..
T Consensus 222 gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflg 301 (412)
T PRK05342 222 GGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIG 301 (412)
T ss_pred CCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhC
Confidence 1344555443 00000 0124689999
Q ss_pred ccC-CCcCCCCCHHHHHHHHH----HHHHHHh---hh--hcCCCChHHHHHHHhhh
Q 003094 350 RFQ-PVKVPEPSVDETIQILK----GLRERYE---IH--HKLRYTDEALVSAAQLS 395 (848)
Q Consensus 350 Rf~-~i~~~~p~~~e~~~Il~----~~~~~~~---~~--~~~~~s~~~l~~l~~~s 395 (848)
|++ .+.|.+++.+++.+|+. .+.+++. .. -.+.++++++..+++.+
T Consensus 302 Rld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~ 357 (412)
T PRK05342 302 RLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKA 357 (412)
T ss_pred CCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhC
Confidence 997 78999999999999997 3444443 22 23468999999998863
No 247
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.45 E-value=1e-12 Score=131.83 Aligned_cols=200 Identities=21% Similarity=0.327 Sum_probs=145.5
Q ss_pred HHHHhhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEeccccccccc
Q 003094 525 MEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 604 (848)
Q Consensus 525 l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~ 604 (848)
+++.....+++..+....+..... .....|++||||+|+||.|.+.++-+.+||.+..-..++..++..+.
T Consensus 7 yrpksl~~l~~~~e~~~~Lksl~~---------~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS 77 (351)
T KOG2035|consen 7 YRPKSLDELIYHEELANLLKSLSS---------TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPS 77 (351)
T ss_pred cCcchhhhcccHHHHHHHHHHhcc---------cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCC
Confidence 333344456676666555544332 12245799999999999999999999999988777777776665432
Q ss_pred ch-------h--cccCCCCCCcccccccchhHHHH------------cCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEE
Q 003094 605 TV-------S--KLIGSPPGYVGYTEGGQLTEAVR------------RRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLT 663 (848)
Q Consensus 605 ~~-------~--~l~g~~~g~~g~~~~~~l~~~~~------------~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~ 663 (848)
.- + ..+--+|+-.|+.+.-.+.+.++ +.++.|++|.|+|++..++|.+|.+.||...
T Consensus 78 ~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs-- 155 (351)
T KOG2035|consen 78 KKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDAQHALRRTMEKYS-- 155 (351)
T ss_pred CceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHHHHHHHHHHHHHh--
Confidence 11 1 11122333445444333333333 2457899999999999999999999999744
Q ss_pred cCCCceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHH
Q 003094 664 DSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKL 743 (848)
Q Consensus 664 ~~~g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~ 743 (848)
+++++|+.+|.-+.+| +++.+|| -.|..+.++.+
T Consensus 156 ---------~~~RlIl~cns~SriI------------------------------------epIrSRC-l~iRvpaps~e 189 (351)
T KOG2035|consen 156 ---------SNCRLILVCNSTSRII------------------------------------EPIRSRC-LFIRVPAPSDE 189 (351)
T ss_pred ---------cCceEEEEecCcccch------------------------------------hHHhhhe-eEEeCCCCCHH
Confidence 7899999999766644 7799999 89999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHH
Q 003094 744 EVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIM 796 (848)
Q Consensus 744 el~~I~~~~l~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~ 796 (848)
|+..++...+++ ..+.+.++++..|+++ ..|.||+++-
T Consensus 190 eI~~vl~~v~~k---------E~l~lp~~~l~rIa~k------S~~nLRrAll 227 (351)
T KOG2035|consen 190 EITSVLSKVLKK---------EGLQLPKELLKRIAEK------SNRNLRRALL 227 (351)
T ss_pred HHHHHHHHHHHH---------hcccCcHHHHHHHHHH------hcccHHHHHH
Confidence 999999888876 3456789999999984 5678888876
No 248
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.45 E-value=3.3e-12 Score=146.19 Aligned_cols=187 Identities=18% Similarity=0.269 Sum_probs=122.2
Q ss_pred CCCCc-cCChH--HHHHHHHHhccC--CCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCccccccc
Q 003094 195 KLDPV-VGRQP--QIERVVQILGRR--TKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTK 269 (848)
Q Consensus 195 ~ld~i-iG~~~--~~~~l~~~l~~~--~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~~ 269 (848)
+||++ +|..+ ....+..+...+ ..++++|+||||+|||++++++++.+.... .+..++++++..+.. .
T Consensus 120 tfd~fv~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~-----~~~~v~yi~~~~~~~--~ 192 (450)
T PRK00149 120 TFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKN-----PNAKVVYVTSEKFTN--D 192 (450)
T ss_pred cccccccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhC-----CCCeEEEEEHHHHHH--H
Confidence 67774 45443 333344443332 235688999999999999999999986421 156788888766542 1
Q ss_pred ccchHH-HHHHHHHHHHHhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCCceEEEEeeChHHHHhhhhcChhhh
Q 003094 270 YRGEFE-ERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATTLDEYRKHIEKDPALE 348 (848)
Q Consensus 270 ~~g~~~-~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~atn~~~~~~~~~~d~al~ 348 (848)
+..... .....+.+..+. .-+|+|||+|.+.+.. ....++...+....+.+..++|++..++.... .+++.+.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~--~dlLiiDDi~~l~~~~--~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~--~l~~~l~ 266 (450)
T PRK00149 193 FVNALRNNTMEEFKEKYRS--VDVLLIDDIQFLAGKE--RTQEEFFHTFNALHEAGKQIVLTSDRPPKELP--GLEERLR 266 (450)
T ss_pred HHHHHHcCcHHHHHHHHhc--CCEEEEehhhhhcCCH--HHHHHHHHHHHHHHHCCCcEEEECCCCHHHHH--HHHHHHH
Confidence 111111 112233333333 3399999999985331 12234556666666676666666555544221 2679999
Q ss_pred cccC---CCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcc
Q 003094 349 RRFQ---PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQY 398 (848)
Q Consensus 349 ~Rf~---~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~ 398 (848)
+||. .+.|.+|+.+++.+|++..+.. .++.++++++++++..+.+.
T Consensus 267 SRl~~gl~v~i~~pd~~~r~~il~~~~~~----~~~~l~~e~l~~ia~~~~~~ 315 (450)
T PRK00149 267 SRFEWGLTVDIEPPDLETRIAILKKKAEE----EGIDLPDEVLEFIAKNITSN 315 (450)
T ss_pred hHhcCCeeEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHcCcCCC
Confidence 9994 7899999999999999988773 57889999999999866553
No 249
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.45 E-value=1.5e-12 Score=141.55 Aligned_cols=108 Identities=25% Similarity=0.398 Sum_probs=77.6
Q ss_pred CCeEEEEcccchhhhCCCCC----chHHHHHHHhhhhcC------------CceEEEEeeChHHHHhhhhcChhhhcccC
Q 003094 289 DEIILFIDEVHTLIGAGAAE----GAIDAANILKPSLAR------------GELQCIGATTLDEYRKHIEKDPALERRFQ 352 (848)
Q Consensus 289 ~~~IL~IDEid~l~~~~~~~----~~~~~~~~L~~~l~~------------~~v~vI~atn~~~~~~~~~~d~al~~Rf~ 352 (848)
...|+||||+|.++..+.+. ....++..|+++++. .++.+|+++.-... +.-++=|.|..||.
T Consensus 247 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~-kp~DlIPEl~GR~P 325 (441)
T TIGR00390 247 QSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLA-KPSDLIPELQGRFP 325 (441)
T ss_pred cCCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCC-ChhhccHHHhCccc
Confidence 35699999999998654221 233588888888874 56888887763221 11146699999997
Q ss_pred -CCcCCCCCHHHHHHHHH----HHHHHHh---hhhc--CCCChHHHHHHHhhhhc
Q 003094 353 -PVKVPEPSVDETIQILK----GLRERYE---IHHK--LRYTDEALVSAAQLSYQ 397 (848)
Q Consensus 353 -~i~~~~p~~~e~~~Il~----~~~~~~~---~~~~--~~~s~~~l~~l~~~s~~ 397 (848)
.+.+.+++.++...||. .+.++|. ...+ +.++++++..+++.+..
T Consensus 326 i~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~ 380 (441)
T TIGR00390 326 IRVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYN 380 (441)
T ss_pred eEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHH
Confidence 88999999999999983 3555554 2233 45799999999988753
No 250
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.44 E-value=4.7e-12 Score=143.16 Aligned_cols=187 Identities=18% Similarity=0.297 Sum_probs=119.6
Q ss_pred CCCC-ccCChHHH--HHHHHHhccC--CCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCccccccc
Q 003094 195 KLDP-VVGRQPQI--ERVVQILGRR--TKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTK 269 (848)
Q Consensus 195 ~ld~-iiG~~~~~--~~l~~~l~~~--~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~~ 269 (848)
+||+ ++|.++.. ..+.++...+ ..++++|+||+|+|||++++++++++.... .+..++++++..+...
T Consensus 108 tfd~fi~g~~n~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~-----~~~~v~yi~~~~~~~~-- 180 (405)
T TIGR00362 108 TFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNEILENN-----PNAKVVYVSSEKFTND-- 180 (405)
T ss_pred cccccccCCcHHHHHHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHHHHHHhC-----CCCcEEEEEHHHHHHH--
Confidence 5777 45655532 2333333332 234578999999999999999999986421 1467888887654321
Q ss_pred ccchHH-HHHHHHHHHHHhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCCceEEEEeeChHHHHhhhhcChhhh
Q 003094 270 YRGEFE-ERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATTLDEYRKHIEKDPALE 348 (848)
Q Consensus 270 ~~g~~~-~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~atn~~~~~~~~~~d~al~ 348 (848)
+..... ..+..+.+.++.. -+|+|||+|.+.+.. .....+...+....+.+..++|.+...+.... .+++.+.
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~--dlLiiDDi~~l~~~~--~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~--~l~~~l~ 254 (405)
T TIGR00362 181 FVNALRNNKMEEFKEKYRSV--DLLLIDDIQFLAGKE--RTQEEFFHTFNALHENGKQIVLTSDRPPKELP--GLEERLR 254 (405)
T ss_pred HHHHHHcCCHHHHHHHHHhC--CEEEEehhhhhcCCH--HHHHHHHHHHHHHHHCCCCEEEecCCCHHHHh--hhhhhhh
Confidence 111110 0122233333333 399999999985321 11234555666666666555555554444222 3688999
Q ss_pred cccC---CCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcc
Q 003094 349 RRFQ---PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQY 398 (848)
Q Consensus 349 ~Rf~---~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~ 398 (848)
+||. .+.|++|+.+++..|++..++. .++.++++++..++....+-
T Consensus 255 SRl~~g~~v~i~~pd~~~r~~il~~~~~~----~~~~l~~e~l~~ia~~~~~~ 303 (405)
T TIGR00362 255 SRFEWGLVVDIEPPDLETRLAILQKKAEE----EGLELPDEVLEFIAKNIRSN 303 (405)
T ss_pred hhccCCeEEEeCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHhcCCC
Confidence 9995 6999999999999999988874 57889999999998765543
No 251
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.44 E-value=9.5e-13 Score=142.61 Aligned_cols=233 Identities=18% Similarity=0.203 Sum_probs=137.6
Q ss_pred hccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhc----------C---CCCceEEec
Q 003094 530 HKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYF----------G---SEEAMIRLD 596 (848)
Q Consensus 530 ~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~----------~---~~~~~i~i~ 596 (848)
+..|+||++++..+.-.+-.. . .+++++.|++|+|||+++++++..+- + ....+++.+
T Consensus 3 f~~ivgq~~~~~al~~~~~~~-------~--~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVIDP-------K--IGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMMCEE 73 (337)
T ss_pred ccccccHHHHHHHHHHHhcCC-------C--CCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccccChH
Confidence 356899999988776554321 1 35799999999999999999999871 1 011122222
Q ss_pred cccccc-------------------ccchhcccCCCCCCccccccc--chhHHHHcCCCeEEEEcCCCcCChHHHHHHHh
Q 003094 597 MSEFME-------------------RHTVSKLIGSPPGYVGYTEGG--QLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQ 655 (848)
Q Consensus 597 ~~~~~~-------------------~~~~~~l~g~~~g~~g~~~~~--~l~~~~~~~~~~Vl~lDEid~l~~~~~~~Ll~ 655 (848)
|....+ ..+...++|...-......+. .-.+.+.++.+++||+||++.+++.+|+.|++
T Consensus 74 ~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~~~Q~~Ll~ 153 (337)
T TIGR02030 74 VRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLEDHLVDVLLD 153 (337)
T ss_pred HhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCHHHHHHHHH
Confidence 222100 001113333311000000000 01233455778999999999999999999999
Q ss_pred hhcCcE--EEcCCCceee-cCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccC
Q 003094 656 ILEDGR--LTDSKGRTVD-FKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLD 732 (848)
Q Consensus 656 ~le~g~--~~~~~g~~v~-~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d 732 (848)
+|++|. +... |.... ..++++|+|.|... ..|+++|++||.
T Consensus 154 ~l~~g~~~v~r~-G~~~~~~~r~iviat~np~e-----------------------------------g~l~~~LldRf~ 197 (337)
T TIGR02030 154 VAASGWNVVERE-GISIRHPARFVLVGSGNPEE-----------------------------------GELRPQLLDRFG 197 (337)
T ss_pred HHHhCCeEEEEC-CEEEEcCCCEEEEecccccc-----------------------------------CCCCHHHHhhcc
Confidence 999885 3322 32222 24667777776321 137899999998
Q ss_pred eEEEcCCCCH-HHHHHHHHHHHHH----------H-------HHH---HhcCCCeEeecHHHHHHHHHccCCC-CCCchH
Q 003094 733 EMIVFRQLTK-LEVKEIADIMLKE----------V-------FDR---LKTKDIELQVTERFRERVVEEGYNP-SYGARP 790 (848)
Q Consensus 733 ~~i~f~~l~~-~el~~I~~~~l~~----------~-------~~~---~~~~~~~l~i~~~a~~~l~~~~~~~-~~g~r~ 790 (848)
..+.+.++.. ++..+|+...... + .+. .+..-..+.+++++++++++.+..- ..|-|
T Consensus 198 l~i~l~~p~~~eer~eIL~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~R- 276 (337)
T TIGR02030 198 LHAEIRTVRDVELRVEIVERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLR- 276 (337)
T ss_pred eEEECCCCCCHHHHHHHHHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCc-
Confidence 8888888865 6667777653211 1 111 1111245678999999998853211 11233
Q ss_pred HHHHHHHHHHHHHHHHHHccc
Q 003094 791 LRRAIMRLLEDSMAEKMLARE 811 (848)
Q Consensus 791 L~~~i~~~l~~~l~~~~l~~~ 811 (848)
.-..++.-+-+.+.+.+.
T Consensus 277 ---a~i~l~raArA~Aal~GR 294 (337)
T TIGR02030 277 ---GELTLNRAAKALAAFEGR 294 (337)
T ss_pred ---HHHHHHHHHHHHHHHcCC
Confidence 334466666777777653
No 252
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.44 E-value=1.1e-12 Score=142.58 Aligned_cols=123 Identities=24% Similarity=0.387 Sum_probs=85.0
Q ss_pred CCeEEEEcccchhhhCCCCC----chHHHHHHHhhhhcC------------CceEEEEeeChHHHHhhhhcChhhhcccC
Q 003094 289 DEIILFIDEVHTLIGAGAAE----GAIDAANILKPSLAR------------GELQCIGATTLDEYRKHIEKDPALERRFQ 352 (848)
Q Consensus 289 ~~~IL~IDEid~l~~~~~~~----~~~~~~~~L~~~l~~------------~~v~vI~atn~~~~~~~~~~d~al~~Rf~ 352 (848)
..+|+||||+|.++..+++. ....++..|+++++. .++.+|+++.-... +.-++-|.|..||.
T Consensus 249 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~-kp~DlIPEl~GR~P 327 (443)
T PRK05201 249 QNGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVS-KPSDLIPELQGRFP 327 (443)
T ss_pred cCCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCC-ChhhccHHHhCccc
Confidence 34599999999998654321 223478888888874 56888887763211 11246699999998
Q ss_pred -CCcCCCCCHHHHHHHHH----HHHHHHhh---h--hcCCCChHHHHHHHhhhhc------ccccCCChhhHHHHH
Q 003094 353 -PVKVPEPSVDETIQILK----GLRERYEI---H--HKLRYTDEALVSAAQLSYQ------YISDRFLPDKAIDLI 412 (848)
Q Consensus 353 -~i~~~~p~~~e~~~Il~----~~~~~~~~---~--~~~~~s~~~l~~l~~~s~~------~~~~~~~p~~a~~ll 412 (848)
.+.+.+++.++...||. .+.++|.. . ..+.++++++..+|+.+.. -++.|.+-.-...+|
T Consensus 328 i~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI~E~~L 403 (443)
T PRK05201 328 IRVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKLL 403 (443)
T ss_pred eEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhcccccccchhhHHHHHHHHH
Confidence 88999999999999994 36666543 2 2346899999999988764 455554433333333
No 253
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.43 E-value=7e-12 Score=143.39 Aligned_cols=186 Identities=16% Similarity=0.211 Sum_probs=118.6
Q ss_pred CCCCcc-CChHH--HHHHHHHhccC--CCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCccccccc
Q 003094 195 KLDPVV-GRQPQ--IERVVQILGRR--TKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTK 269 (848)
Q Consensus 195 ~ld~ii-G~~~~--~~~l~~~l~~~--~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~~ 269 (848)
+||+++ |..+. ...+..+.... ..+.++|||++|+|||+|++++++.+.... .+..++++++..+...
T Consensus 286 TFDnFvvG~sN~~A~aaa~avae~~~~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~-----~g~~V~Yitaeef~~e-- 358 (617)
T PRK14086 286 TFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARRLY-----PGTRVRYVSSEEFTNE-- 358 (617)
T ss_pred CHhhhcCCCccHHHHHHHHHHHhCccccCCcEEEECCCCCCHHHHHHHHHHHHHHhC-----CCCeEEEeeHHHHHHH--
Confidence 577765 44443 22333333321 224478999999999999999999885311 2567888887665521
Q ss_pred ccchHHH-HHHHHHHHHHhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCCceEEEEeeChHHHHhhhhcChhhh
Q 003094 270 YRGEFEE-RLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATTLDEYRKHIEKDPALE 348 (848)
Q Consensus 270 ~~g~~~~-~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~atn~~~~~~~~~~d~al~ 348 (848)
+...... .+..+.+..++. -+|+|||++.+.+. ......+.+++....+.+.-+||.+...+.. .-.+++.|.
T Consensus 359 l~~al~~~~~~~f~~~y~~~--DLLlIDDIq~l~gk--e~tqeeLF~l~N~l~e~gk~IIITSd~~P~e--L~~l~~rL~ 432 (617)
T PRK14086 359 FINSIRDGKGDSFRRRYREM--DILLVDDIQFLEDK--ESTQEEFFHTFNTLHNANKQIVLSSDRPPKQ--LVTLEDRLR 432 (617)
T ss_pred HHHHHHhccHHHHHHHhhcC--CEEEEehhccccCC--HHHHHHHHHHHHHHHhcCCCEEEecCCChHh--hhhccHHHH
Confidence 1111111 122222333333 39999999998532 2223456666666666655544433333321 124689999
Q ss_pred cccC---CCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhc
Q 003094 349 RRFQ---PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQ 397 (848)
Q Consensus 349 ~Rf~---~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~ 397 (848)
+||. .+.+..|+.+.|..||+..+. ..++.++++++.+|+....+
T Consensus 433 SRf~~GLvv~I~~PD~EtR~aIL~kka~----~r~l~l~~eVi~yLa~r~~r 480 (617)
T PRK14086 433 NRFEWGLITDVQPPELETRIAILRKKAV----QEQLNAPPEVLEFIASRISR 480 (617)
T ss_pred hhhhcCceEEcCCCCHHHHHHHHHHHHH----hcCCCCCHHHHHHHHHhccC
Confidence 9995 789999999999999998876 35789999999999885443
No 254
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.43 E-value=5.4e-12 Score=134.24 Aligned_cols=158 Identities=22% Similarity=0.280 Sum_probs=110.9
Q ss_pred EEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhcccCCCCCC--cccc----cccchhHHHHcCCCeE
Q 003094 563 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGY--VGYT----EGGQLTEAVRRRPYTV 636 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~--~g~~----~~~~l~~~~~~~~~~V 636 (848)
++||.||||||||++++.+|+.+ +.++++++|..... ..+++|...-. .|.. ..+.+..+.+ .+.+
T Consensus 66 ~ilL~G~pGtGKTtla~~lA~~l---~~~~~rV~~~~~l~---~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~--~g~i 137 (327)
T TIGR01650 66 RVMVQGYHGTGKSTHIEQIAARL---NWPCVRVNLDSHVS---RIDLVGKDAIVLKDGKQITEFRDGILPWALQ--HNVA 137 (327)
T ss_pred cEEEEeCCCChHHHHHHHHHHHH---CCCeEEEEecCCCC---hhhcCCCceeeccCCcceeEEecCcchhHHh--CCeE
Confidence 49999999999999999999998 78999999987643 44567753211 1110 1134444444 3478
Q ss_pred EEEcCCCcCChHHHHHHHhhhc-CcEEEcCC-Ccee-ecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHH
Q 003094 637 VLFDEIEKAHPDVFNMMLQILE-DGRLTDSK-GRTV-DFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKS 713 (848)
Q Consensus 637 l~lDEid~l~~~~~~~Ll~~le-~g~~~~~~-g~~v-~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~ 713 (848)
|+|||++.++|++++.|..+|| ++.++..+ ++.+ ..+++++|+|.|.-..- ...+.+-|
T Consensus 138 lllDEin~a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~G-d~~G~y~G----------------- 199 (327)
T TIGR01650 138 LCFDEYDAGRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLG-DTTGLYHG----------------- 199 (327)
T ss_pred EEechhhccCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcC-CCCcceee-----------------
Confidence 9999999999999999999999 46777544 5666 44589999999942210 00000111
Q ss_pred HHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHHHH
Q 003094 714 LVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIM 752 (848)
Q Consensus 714 ~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~~~ 752 (848)
...+++++++||-.++.+..+++++-.+|+...
T Consensus 200 ------t~~l~~A~lDRF~i~~~~~Yp~~e~E~~Il~~~ 232 (327)
T TIGR01650 200 ------TQQINQAQMDRWSIVTTLNYLEHDNEAAIVLAK 232 (327)
T ss_pred ------eecCCHHHHhheeeEeeCCCCCHHHHHHHHHhh
Confidence 113689999999556789999998888887543
No 255
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.43 E-value=2.3e-12 Score=133.91 Aligned_cols=182 Identities=16% Similarity=0.195 Sum_probs=124.1
Q ss_pred ChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhcccCCCC
Q 003094 535 GQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPP 614 (848)
Q Consensus 535 gq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~ 614 (848)
+...+++.+.+.+.. ....+++|+||+|||||++|+.+++.+...+.+++.++|..+.... .
T Consensus 21 ~~~~~~~~l~~~~~~---------~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~--~------- 82 (226)
T TIGR03420 21 GNAELLAALRQLAAG---------KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQAD--P------- 82 (226)
T ss_pred CcHHHHHHHHHHHhc---------CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhH--H-------
Confidence 345566666555431 1123599999999999999999999886666788889988774321 0
Q ss_pred CCcccccccchhHHHHcCCCeEEEEcCCCcCChH--HHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCchhhhccC
Q 003094 615 GYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPD--VFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGG 692 (848)
Q Consensus 615 g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~--~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~i~~~~ 692 (848)
.+.+.+.. ..+|+|||++.++.. .++.|..+++...- .+..+|+|++......
T Consensus 83 ---------~~~~~~~~--~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~----------~~~~iIits~~~~~~~---- 137 (226)
T TIGR03420 83 ---------EVLEGLEQ--ADLVCLDDVEAIAGQPEWQEALFHLYNRVRE----------AGGRLLIAGRAAPAQL---- 137 (226)
T ss_pred ---------HHHhhccc--CCEEEEeChhhhcCChHHHHHHHHHHHHHHH----------cCCeEEEECCCChHHC----
Confidence 11122222 359999999999874 48888888764210 1235777776332100
Q ss_pred cccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccC--eEEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCeEeec
Q 003094 693 RRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLD--EMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVT 770 (848)
Q Consensus 693 ~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d--~~i~f~~l~~~el~~I~~~~l~~~~~~~~~~~~~l~i~ 770 (848)
....+.|.+|+. ..|.++||+.+++..++...+.+ ..+.++
T Consensus 138 ----------------------------~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~---------~~~~~~ 180 (226)
T TIGR03420 138 ----------------------------PLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAAR---------RGLQLP 180 (226)
T ss_pred ----------------------------CcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHH---------cCCCCC
Confidence 012267788873 57999999999998888654432 134689
Q ss_pred HHHHHHHHHccCCCCCCchHHHHHHHHHH
Q 003094 771 ERFRERVVEEGYNPSYGARPLRRAIMRLL 799 (848)
Q Consensus 771 ~~a~~~l~~~~~~~~~g~r~L~~~i~~~l 799 (848)
++++++|.. + |+++.|+|+++++.+-
T Consensus 181 ~~~l~~L~~--~-~~gn~r~L~~~l~~~~ 206 (226)
T TIGR03420 181 DEVADYLLR--H-GSRDMGSLMALLDALD 206 (226)
T ss_pred HHHHHHHHH--h-ccCCHHHHHHHHHHHH
Confidence 999999998 4 8889999999998644
No 256
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=1e-12 Score=137.92 Aligned_cols=181 Identities=16% Similarity=0.276 Sum_probs=129.9
Q ss_pred CceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhcccCCCCCCcccccc--cchhHHHHcCCCeEE
Q 003094 560 PIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEG--GQLTEAVRRRPYTVV 637 (848)
Q Consensus 560 p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~~g~~~~--~~l~~~~~~~~~~Vl 637 (848)
|...+||+||||||||++|+++|+.. +.+|+.+.++.+++. |.|..++ ..+|....+-.+++|
T Consensus 126 p~kGiLL~GPpG~GKTmlAKA~Akea---ga~fInv~~s~lt~K------------WfgE~eKlv~AvFslAsKl~P~iI 190 (386)
T KOG0737|consen 126 PPKGILLYGPPGTGKTMLAKAIAKEA---GANFINVSVSNLTSK------------WFGEAQKLVKAVFSLASKLQPSII 190 (386)
T ss_pred CCccceecCCCCchHHHHHHHHHHHc---CCCcceeeccccchh------------hHHHHHHHHHHHHhhhhhcCccee
Confidence 44569999999999999999999987 889999999988653 4444443 456667777889999
Q ss_pred EEcCCCcCC-------hH----HHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCchhhhccCcccccccCCCcccc
Q 003094 638 LFDEIEKAH-------PD----VFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDS 706 (848)
Q Consensus 638 ~lDEid~l~-------~~----~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~ 706 (848)
||||+|.+- .+ .-+.++...+. -.++. -..++++.+||.+.+
T Consensus 191 FIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDG-l~s~~------~~rVlVlgATNRP~D-------------------- 243 (386)
T KOG0737|consen 191 FIDEVDSFLGQRRSTDHEATAMMKNEFMALWDG-LSSKD------SERVLVLGATNRPFD-------------------- 243 (386)
T ss_pred ehhhHHHHHhhcccchHHHHHHHHHHHHHHhcc-ccCCC------CceEEEEeCCCCCcc--------------------
Confidence 999999762 22 33344444433 22211 124678888886665
Q ss_pred cHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCeEeecHHHHHHHHHccCCCCC
Q 003094 707 SYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSY 786 (848)
Q Consensus 707 ~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~~~l~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~ 786 (848)
++.++++|+...+...-++.++..+|+..+|+.-. .+-.|| ++.++. ....|
T Consensus 244 ----------------lDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~-------~e~~vD---~~~iA~--~t~Gy 295 (386)
T KOG0737|consen 244 ----------------LDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEK-------LEDDVD---LDEIAQ--MTEGY 295 (386)
T ss_pred ----------------HHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccc-------cCcccC---HHHHHH--hcCCC
Confidence 45789999999999999999999999998886521 111232 233444 44557
Q ss_pred CchHHHHHHHHHHHHHHHHHHHcc
Q 003094 787 GARPLRRAIMRLLEDSMAEKMLAR 810 (848)
Q Consensus 787 g~r~L~~~i~~~l~~~l~~~~l~~ 810 (848)
..++|+..+......++-+++-.+
T Consensus 296 SGSDLkelC~~Aa~~~ire~~~~~ 319 (386)
T KOG0737|consen 296 SGSDLKELCRLAALRPIRELLVSE 319 (386)
T ss_pred cHHHHHHHHHHHhHhHHHHHHHhc
Confidence 789999999999998888886664
No 257
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=1.5e-12 Score=136.60 Aligned_cols=167 Identities=19% Similarity=0.266 Sum_probs=112.6
Q ss_pred cccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhcccC
Q 003094 532 RVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIG 611 (848)
Q Consensus 532 ~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g 611 (848)
.||-+......|..... .-...+....|..++|||||||||||++|+-||+.. +..+-.+...++
T Consensus 356 ~ViL~psLe~Rie~lA~-aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~S---GlDYA~mTGGDV----------- 420 (630)
T KOG0742|consen 356 GVILHPSLEKRIEDLAI-ATANTKKHQAPFRNILFYGPPGTGKTMFARELARHS---GLDYAIMTGGDV----------- 420 (630)
T ss_pred CeecCHHHHHHHHHHHH-HhcccccccchhhheeeeCCCCCCchHHHHHHHhhc---CCceehhcCCCc-----------
Confidence 45555444444444333 234455556788899999999999999999999986 322222222221
Q ss_pred CCCCCcccccccchhHHHHcCCCe-EEEEcCCCcC---------ChHHHHHHHhhh-cCcEEEcCCCceeecCCeEEEEe
Q 003094 612 SPPGYVGYTEGGQLTEAVRRRPYT-VVLFDEIEKA---------HPDVFNMMLQIL-EDGRLTDSKGRTVDFKNTLLIMT 680 (848)
Q Consensus 612 ~~~g~~g~~~~~~l~~~~~~~~~~-Vl~lDEid~l---------~~~~~~~Ll~~l-e~g~~~~~~g~~v~~~~~iiI~t 680 (848)
.|.|..+.+....+|+..+++..+ +|||||+|.. +......|..+| ..|.- ..+++++++
T Consensus 421 APlG~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdq---------SrdivLvlA 491 (630)
T KOG0742|consen 421 APLGAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQ---------SRDIVLVLA 491 (630)
T ss_pred cccchHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhccc---------ccceEEEec
Confidence 123344444556788888877655 7899999953 443333333333 23331 157899999
Q ss_pred cCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHHHHHHHHHH
Q 003094 681 SNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFD 758 (848)
Q Consensus 681 sN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~~~l~~~~~ 758 (848)
||.+.+ |+.+.-+|||++|.|+-+-+++...++..+++++..
T Consensus 492 tNrpgd------------------------------------lDsAV~DRide~veFpLPGeEERfkll~lYlnkyi~ 533 (630)
T KOG0742|consen 492 TNRPGD------------------------------------LDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKYIL 533 (630)
T ss_pred cCCccc------------------------------------hhHHHHhhhhheeecCCCChHHHHHHHHHHHHHHhc
Confidence 996554 667888999999999999999999999999998763
No 258
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.42 E-value=9.2e-13 Score=142.18 Aligned_cols=165 Identities=23% Similarity=0.402 Sum_probs=112.0
Q ss_pred hhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCC--ceEEecccccccccch
Q 003094 529 LHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEE--AMIRLDMSEFMERHTV 606 (848)
Q Consensus 529 l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~--~~i~i~~~~~~~~~~~ 606 (848)
.+++|+||+.+++.+.+.+...+. .+.+||+||+|+||+++|.++|+.+++.+. .+....+... .|..
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~rl--------~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~--~hPD 71 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQNRI--------APAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEG--NHPD 71 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhCCC--------CceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccC--CCCC
Confidence 367899999999999999875422 246999999999999999999999976541 1111110010 0100
Q ss_pred hccc-------CCC---------------CCCcccccccchhHHHHc----CCCeEEEEcCCCcCChHHHHHHHhhhcCc
Q 003094 607 SKLI-------GSP---------------PGYVGYTEGGQLTEAVRR----RPYTVVLFDEIEKAHPDVFNMMLQILEDG 660 (848)
Q Consensus 607 ~~l~-------g~~---------------~g~~g~~~~~~l~~~~~~----~~~~Vl~lDEid~l~~~~~~~Ll~~le~g 660 (848)
-.++ |.. .+..+.+..+.+.+.+.. +.+.|++||++|+++...+|.||+.||+
T Consensus 72 l~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEE- 150 (314)
T PRK07399 72 LLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEE- 150 (314)
T ss_pred EEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhC-
Confidence 0000 100 000111111233334433 4578999999999999999999999998
Q ss_pred EEEcCCCceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCC
Q 003094 661 RLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQL 740 (848)
Q Consensus 661 ~~~~~~g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l 740 (848)
+ ++++||+.|+... .+.|.+++|| ..+.|+++
T Consensus 151 ----------P-p~~~fILi~~~~~------------------------------------~Ll~TI~SRc-q~i~f~~l 182 (314)
T PRK07399 151 ----------P-GNGTLILIAPSPE------------------------------------SLLPTIVSRC-QIIPFYRL 182 (314)
T ss_pred ----------C-CCCeEEEEECChH------------------------------------hCcHHHHhhc-eEEecCCC
Confidence 2 2678888886332 2558899999 99999999
Q ss_pred CHHHHHHHHHHH
Q 003094 741 TKLEVKEIADIM 752 (848)
Q Consensus 741 ~~~el~~I~~~~ 752 (848)
+.+++.+++...
T Consensus 183 ~~~~~~~~L~~~ 194 (314)
T PRK07399 183 SDEQLEQVLKRL 194 (314)
T ss_pred CHHHHHHHHHHh
Confidence 999999888654
No 259
>PRK05642 DNA replication initiation factor; Validated
Probab=99.42 E-value=4.2e-12 Score=132.04 Aligned_cols=155 Identities=17% Similarity=0.223 Sum_probs=111.6
Q ss_pred CCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccccccccchHHHHHHHHHHHHHhCCCeEEEEcc
Q 003094 218 KNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDE 297 (848)
Q Consensus 218 ~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~IL~IDE 297 (848)
.++++|+||+|+|||++++++++.+... +..+++++...+... ...+++.+...+ +|+|||
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~-------~~~v~y~~~~~~~~~----------~~~~~~~~~~~d--~LiiDD 105 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQR-------GEPAVYLPLAELLDR----------GPELLDNLEQYE--LVCLDD 105 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhC-------CCcEEEeeHHHHHhh----------hHHHHHhhhhCC--EEEEec
Confidence 3567899999999999999999987532 466888887665421 123444445444 899999
Q ss_pred cchhhhCCCCCchHHHHHHHhhhhcCCceEEEEeeChHHHHhhhhcChhhhccc---CCCcCCCCCHHHHHHHHHHHHHH
Q 003094 298 VHTLIGAGAAEGAIDAANILKPSLARGELQCIGATTLDEYRKHIEKDPALERRF---QPVKVPEPSVDETIQILKGLRER 374 (848)
Q Consensus 298 id~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~atn~~~~~~~~~~d~al~~Rf---~~i~~~~p~~~e~~~Il~~~~~~ 374 (848)
++.+.+. ......+..++....+++..++|++++.+... -...|.+.+|| ..+.+.+|+.+++..+++....
T Consensus 106 i~~~~~~--~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l--~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~- 180 (234)
T PRK05642 106 LDVIAGK--ADWEEALFHLFNRLRDSGRRLLLAASKSPREL--PIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRAS- 180 (234)
T ss_pred hhhhcCC--hHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHc--CccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHH-
Confidence 9987432 12233456666666677777777777666532 12479999999 4788999999999999996554
Q ss_pred HhhhhcCCCChHHHHHHHhhhhccc
Q 003094 375 YEIHHKLRYTDEALVSAAQLSYQYI 399 (848)
Q Consensus 375 ~~~~~~~~~s~~~l~~l~~~s~~~~ 399 (848)
..++.+++++++++++...+-.
T Consensus 181 ---~~~~~l~~ev~~~L~~~~~~d~ 202 (234)
T PRK05642 181 ---RRGLHLTDEVGHFILTRGTRSM 202 (234)
T ss_pred ---HcCCCCCHHHHHHHHHhcCCCH
Confidence 2468899999999998766643
No 260
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.42 E-value=8.5e-12 Score=148.51 Aligned_cols=195 Identities=19% Similarity=0.267 Sum_probs=133.3
Q ss_pred CccCChHHHHHHHHHhcc---------CCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccc--
Q 003094 198 PVVGRQPQIERVVQILGR---------RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVA-- 266 (848)
Q Consensus 198 ~iiG~~~~~~~l~~~l~~---------~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~-- 266 (848)
.++||++.++.|.+.+.. ++..++||+||||||||.+|+.+|+.+ +.+++.+|++.+..
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l----------~~~~i~id~se~~~~~ 528 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL----------GIELLRFDMSEYMERH 528 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh----------CCCcEEeechhhcccc
Confidence 589999999998887662 223468999999999999999999988 35678888876542
Q ss_pred ------c--ccccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCC-------------c
Q 003094 267 ------G--TKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARG-------------E 325 (848)
Q Consensus 267 ------~--~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~-------------~ 325 (848)
| ..|.|. ..-..+.+.++..+.+||||||+|.+. .++++.|+++++.+ +
T Consensus 529 ~~~~LiG~~~gyvg~--~~~g~L~~~v~~~p~sVlllDEieka~--------~~v~~~LLq~ld~G~ltd~~g~~vd~rn 598 (758)
T PRK11034 529 TVSRLIGAPPGYVGF--DQGGLLTDAVIKHPHAVLLLDEIEKAH--------PDVFNLLLQVMDNGTLTDNNGRKADFRN 598 (758)
T ss_pred cHHHHcCCCCCcccc--cccchHHHHHHhCCCcEEEeccHhhhh--------HHHHHHHHHHHhcCeeecCCCceecCCC
Confidence 1 112221 111233445556667899999999994 45889999988743 4
Q ss_pred eEEEEeeChHHHH--------------------hhhhcChhhhcccC-CCcCCCCCHHHHHHHHHHHHHHHhh-----hh
Q 003094 326 LQCIGATTLDEYR--------------------KHIEKDPALERRFQ-PVKVPEPSVDETIQILKGLRERYEI-----HH 379 (848)
Q Consensus 326 v~vI~atn~~~~~--------------------~~~~~d~al~~Rf~-~i~~~~p~~~e~~~Il~~~~~~~~~-----~~ 379 (848)
+++|+|||...-. -.....|.|.+|++ .|.|++++.++..+|+...+..+.. ..
T Consensus 599 ~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~i 678 (758)
T PRK11034 599 VVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGV 678 (758)
T ss_pred cEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 5688998832100 01135699999997 8999999999999998876654431 22
Q ss_pred cCCCChHHHHHHHhhhh-cccccCCChhhHHHHH
Q 003094 380 KLRYTDEALVSAAQLSY-QYISDRFLPDKAIDLI 412 (848)
Q Consensus 380 ~~~~s~~~l~~l~~~s~-~~~~~~~~p~~a~~ll 412 (848)
.+.+++++++.++.... ...+.|.+.+...+.+
T Consensus 679 ~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~l 712 (758)
T PRK11034 679 SLEVSQEARDWLAEKGYDRAMGARPMARVIQDNL 712 (758)
T ss_pred CceECHHHHHHHHHhCCCCCCCCchHHHHHHHHH
Confidence 35678999998886432 2234444443333333
No 261
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=1.1e-12 Score=130.10 Aligned_cols=164 Identities=23% Similarity=0.383 Sum_probs=113.5
Q ss_pred ccccChHHHHHHHHHHHHH--------HHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEeccccccc
Q 003094 531 KRVIGQDEAVKAISRAIRR--------ARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFME 602 (848)
Q Consensus 531 ~~vigq~~~~~~l~~~~~~--------~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~ 602 (848)
.++.|.+..++.+.+++-. -..|+++|+ .+|+|||||||||.+||+.|..- +..|..+-...+
T Consensus 171 sDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPK----GvLmYGPPGTGKTlmARAcAaqT---~aTFLKLAgPQL-- 241 (424)
T KOG0652|consen 171 SDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPK----GVLMYGPPGTGKTLMARACAAQT---NATFLKLAGPQL-- 241 (424)
T ss_pred cccccHHHHHHHHHHHhccccccHHHHHhcCCCCCC----ceEeeCCCCCcHHHHHHHHHHhc---cchHHHhcchHH--
Confidence 4677888888777777632 235666654 48999999999999999999764 455555444443
Q ss_pred ccchhcccCCCCCCcccccccchhHHHHcCCCeEEEEcCCCcC-----------ChHHHHHHHhhhcC--cEEEcCCCce
Q 003094 603 RHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKA-----------HPDVFNMMLQILED--GRLTDSKGRT 669 (848)
Q Consensus 603 ~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l-----------~~~~~~~Ll~~le~--g~~~~~~g~~ 669 (848)
+..++|.... -.+..|..++...++||||||+|.+ +.++|..+|.++.. |-.
T Consensus 242 ---VQMfIGdGAk-----LVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFs------- 306 (424)
T KOG0652|consen 242 ---VQMFIGDGAK-----LVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFS------- 306 (424)
T ss_pred ---HhhhhcchHH-----HHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCC-------
Confidence 3444554211 1133456667778899999999976 34688877777642 111
Q ss_pred eecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhh--hccCeEEEcCCCCHHHHHH
Q 003094 670 VDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFL--NRLDEMIVFRQLTKLEVKE 747 (848)
Q Consensus 670 v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll--~R~d~~i~f~~l~~~el~~ 747 (848)
+-.++-+|++||... .++|+|+ +|+|..|.|+.++++....
T Consensus 307 -s~~~vKviAATNRvD------------------------------------iLDPALlRSGRLDRKIEfP~Pne~aRar 349 (424)
T KOG0652|consen 307 -SDDRVKVIAATNRVD------------------------------------ILDPALLRSGRLDRKIEFPHPNEEARAR 349 (424)
T ss_pred -CccceEEEeeccccc------------------------------------ccCHHHhhcccccccccCCCCChHHHHH
Confidence 113677899998322 3678888 7999999999999999988
Q ss_pred HHHHHHHH
Q 003094 748 IADIMLKE 755 (848)
Q Consensus 748 I~~~~l~~ 755 (848)
|+...-.+
T Consensus 350 IlQIHsRK 357 (424)
T KOG0652|consen 350 ILQIHSRK 357 (424)
T ss_pred HHHHhhhh
Confidence 88655544
No 262
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.41 E-value=7.9e-12 Score=141.12 Aligned_cols=185 Identities=14% Similarity=0.191 Sum_probs=116.4
Q ss_pred CCCCCcc-CChHHH--HHHHHHhcc------CCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcc
Q 003094 194 GKLDPVV-GRQPQI--ERVVQILGR------RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLL 264 (848)
Q Consensus 194 ~~ld~ii-G~~~~~--~~l~~~l~~------~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l 264 (848)
.+||+++ |..+.. ..+.++... ...++++|+||+|+|||++++++++.+... +.++++++...+
T Consensus 108 ~tFdnFv~g~~N~~a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~-------~~~v~yi~~~~f 180 (445)
T PRK12422 108 MTFANFLVTPENDLPHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRES-------GGKILYVRSELF 180 (445)
T ss_pred ccccceeeCCcHHHHHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHc-------CCCEEEeeHHHH
Confidence 3677765 655443 233333221 123568899999999999999999998542 466788876544
Q ss_pred cccccccchHHH-HHHHHHHHHHhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCCceEEEEeeChHHHHhhhhc
Q 003094 265 VAGTKYRGEFEE-RLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATTLDEYRKHIEK 343 (848)
Q Consensus 265 ~~~~~~~g~~~~-~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~atn~~~~~~~~~~ 343 (848)
.. ........ ... .+..... ..-+|+|||++.+.+. .....++...+....+.+..+++.+.+.+... ..+
T Consensus 181 ~~--~~~~~l~~~~~~-~f~~~~~-~~dvLiIDDiq~l~~k--~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l--~~l 252 (445)
T PRK12422 181 TE--HLVSAIRSGEMQ-RFRQFYR-NVDALFIEDIEVFSGK--GATQEEFFHTFNSLHTEGKLIVISSTCAPQDL--KAM 252 (445)
T ss_pred HH--HHHHHHhcchHH-HHHHHcc-cCCEEEEcchhhhcCC--hhhHHHHHHHHHHHHHCCCcEEEecCCCHHHH--hhh
Confidence 31 11111110 111 1222111 2339999999998532 12233445555555555655555554444322 246
Q ss_pred ChhhhcccC---CCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhc
Q 003094 344 DPALERRFQ---PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQ 397 (848)
Q Consensus 344 d~al~~Rf~---~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~ 397 (848)
++++.+||. .+.+++|+.+++..|++..++. .++.++++++.+++....+
T Consensus 253 ~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~----~~~~l~~evl~~la~~~~~ 305 (445)
T PRK12422 253 EERLISRFEWGIAIPLHPLTKEGLRSFLERKAEA----LSIRIEETALDFLIEALSS 305 (445)
T ss_pred HHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHhcCC
Confidence 899999994 7899999999999999988774 4688999999998885554
No 263
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.41 E-value=4.9e-12 Score=131.52 Aligned_cols=161 Identities=15% Similarity=0.143 Sum_probs=115.7
Q ss_pred eEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhcccCCCCCCcccccccchhHHHHcCCCeEEEEcC
Q 003094 562 ASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDE 641 (848)
Q Consensus 562 ~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDE 641 (848)
.+++|+||+|||||++|+++++.+...+.+++.+++....... . ......+|+|||
T Consensus 43 ~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~~----------------------~--~~~~~~~liiDd 98 (227)
T PRK08903 43 RFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLAF----------------------D--FDPEAELYAVDD 98 (227)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHHH----------------------h--hcccCCEEEEeC
Confidence 3589999999999999999999887777888888887653210 0 012346999999
Q ss_pred CCcCChHHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHh
Q 003094 642 IEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQ 721 (848)
Q Consensus 642 id~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 721 (848)
+|.+++..+..|+.+++...- ....++|++++.... ..
T Consensus 99 i~~l~~~~~~~L~~~~~~~~~---------~~~~~vl~~~~~~~~---------------------------------~~ 136 (227)
T PRK08903 99 VERLDDAQQIALFNLFNRVRA---------HGQGALLVAGPAAPL---------------------------------AL 136 (227)
T ss_pred hhhcCchHHHHHHHHHHHHHH---------cCCcEEEEeCCCCHH---------------------------------hC
Confidence 999999999999998865220 012346666653211 01
Q ss_pred hcChhhhhcc--CeEEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHHHHH
Q 003094 722 YFRPEFLNRL--DEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLL 799 (848)
Q Consensus 722 ~~~~~ll~R~--d~~i~f~~l~~~el~~I~~~~l~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~l 799 (848)
.+.++|.+|+ ...+.++||+.++...++.....+ ..+.++++++++|.. .|+.+.|.|++.++.+-
T Consensus 137 ~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~---------~~v~l~~~al~~L~~---~~~gn~~~l~~~l~~l~ 204 (227)
T PRK08903 137 PLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAE---------RGLQLADEVPDYLLT---HFRRDMPSLMALLDALD 204 (227)
T ss_pred CCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHH---------cCCCCCHHHHHHHHH---hccCCHHHHHHHHHHHH
Confidence 2457888898 368999999998776666543322 235689999999998 37788899999998754
Q ss_pred H
Q 003094 800 E 800 (848)
Q Consensus 800 ~ 800 (848)
.
T Consensus 205 ~ 205 (227)
T PRK08903 205 R 205 (227)
T ss_pred H
Confidence 3
No 264
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.41 E-value=8.6e-12 Score=129.61 Aligned_cols=190 Identities=18% Similarity=0.231 Sum_probs=122.4
Q ss_pred CCCCCccC--ChHHHHHHHHHhccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCccccccccc
Q 003094 194 GKLDPVVG--RQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYR 271 (848)
Q Consensus 194 ~~ld~iiG--~~~~~~~l~~~l~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~~~~ 271 (848)
.+||++++ .+..++++.+.+......+++|+||+|||||++++.+++..... +.+++++++..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~-------~~~~~~i~~~~~~~~---- 80 (226)
T TIGR03420 12 PTFDNFYAGGNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEER-------GKSAIYLPLAELAQA---- 80 (226)
T ss_pred hhhcCcCcCCcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhc-------CCcEEEEeHHHHHHh----
Confidence 35666663 45677888887666777889999999999999999999987532 456788887666421
Q ss_pred chHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCCceEEEEeeChHHHHhhhhcC-hhhhcc
Q 003094 272 GEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATTLDEYRKHIEKD-PALERR 350 (848)
Q Consensus 272 g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~atn~~~~~~~~~~d-~al~~R 350 (848)
...++..... ..+|+|||+|.+... ......+..++....+.+. .+|.+++.... .+... +.+.+|
T Consensus 81 ------~~~~~~~~~~--~~lLvIDdi~~l~~~--~~~~~~L~~~l~~~~~~~~-~iIits~~~~~--~~~~~~~~L~~r 147 (226)
T TIGR03420 81 ------DPEVLEGLEQ--ADLVCLDDVEAIAGQ--PEWQEALFHLYNRVREAGG-RLLIAGRAAPA--QLPLRLPDLRTR 147 (226)
T ss_pred ------HHHHHhhccc--CCEEEEeChhhhcCC--hHHHHHHHHHHHHHHHcCC-eEEEECCCChH--HCCcccHHHHHH
Confidence 1223333332 348999999998432 0011223333333333444 44444443221 11223 788888
Q ss_pred cC---CCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCChhhHHHHHHHHhh
Q 003094 351 FQ---PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGS 417 (848)
Q Consensus 351 f~---~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~p~~a~~ll~~a~~ 417 (848)
|. .|.+++|+.+++..+++.... ..++.++++++..++..+.+. +..+..+++.+..
T Consensus 148 ~~~~~~i~l~~l~~~e~~~~l~~~~~----~~~~~~~~~~l~~L~~~~~gn------~r~L~~~l~~~~~ 207 (226)
T TIGR03420 148 LAWGLVFQLPPLSDEEKIAALQSRAA----RRGLQLPDEVADYLLRHGSRD------MGSLMALLDALDR 207 (226)
T ss_pred HhcCeeEecCCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHhccCC------HHHHHHHHHHHHH
Confidence 84 789999999999999887654 346788999998888854443 4456666665543
No 265
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.40 E-value=2.2e-12 Score=141.55 Aligned_cols=171 Identities=29% Similarity=0.390 Sum_probs=117.2
Q ss_pred HHHHHHHhhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccc
Q 003094 522 LLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFM 601 (848)
Q Consensus 522 l~~l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~ 601 (848)
...+...+...++|+++++..+..++... .++||.||||||||++|+.+|+.+ +.+|++++|....
T Consensus 15 ~~~~~~~~~~~~~g~~~~~~~~l~a~~~~-----------~~vll~G~PG~gKT~la~~lA~~l---~~~~~~i~~t~~l 80 (329)
T COG0714 15 LGKIRSELEKVVVGDEEVIELALLALLAG-----------GHVLLEGPPGVGKTLLARALARAL---GLPFVRIQCTPDL 80 (329)
T ss_pred HHHHHhhcCCeeeccHHHHHHHHHHHHcC-----------CCEEEECCCCccHHHHHHHHHHHh---CCCeEEEecCCCC
Confidence 34456667777999988887776666532 359999999999999999999998 6899999998664
Q ss_pred cccchhcccCCCCCCc-----cc--ccccchhHHHHcCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeec-C
Q 003094 602 ERHTVSKLIGSPPGYV-----GY--TEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDF-K 673 (848)
Q Consensus 602 ~~~~~~~l~g~~~g~~-----g~--~~~~~l~~~~~~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~-~ 673 (848)
. .++++|...-.. +. -..+.++...+ +|+|+|||++++|.+++.|+++|++++++..+-..+.. .
T Consensus 81 ~---p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~----~ill~DEInra~p~~q~aLl~~l~e~~vtv~~~~~~~~~~ 153 (329)
T COG0714 81 L---PSDLLGTYAYAALLLEPGEFRFVPGPLFAAVR----VILLLDEINRAPPEVQNALLEALEERQVTVPGLTTIRLPP 153 (329)
T ss_pred C---HHHhcCchhHhhhhccCCeEEEecCCcccccc----eEEEEeccccCCHHHHHHHHHHHhCcEEEECCcCCcCCCC
Confidence 3 344555422110 00 01123333222 69999999999999999999999999988655431333 4
Q ss_pred CeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHH
Q 003094 674 NTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLE 744 (848)
Q Consensus 674 ~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~e 744 (848)
.+++|+|+|.+.. +.. .-+++++++||...++++.+..++
T Consensus 154 ~f~viaT~Np~e~------------------~g~-------------~~l~eA~ldRf~~~~~v~yp~~~~ 193 (329)
T COG0714 154 PFIVIATQNPGEY------------------EGT-------------YPLPEALLDRFLLRIYVDYPDSEE 193 (329)
T ss_pred CCEEEEccCcccc------------------CCC-------------cCCCHHHHhhEEEEEecCCCCchH
Confidence 5677777783221 000 125789999996667777774443
No 266
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.40 E-value=2.1e-12 Score=141.29 Aligned_cols=184 Identities=20% Similarity=0.283 Sum_probs=118.2
Q ss_pred hhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCC----ceEEe----cccc-
Q 003094 529 LHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEE----AMIRL----DMSE- 599 (848)
Q Consensus 529 l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~----~~i~i----~~~~- 599 (848)
-+..++||+.++..+..++...+ ..+.+||+||+|+|||++|+.+|+.+.+... +.... +|..
T Consensus 21 ~~~~l~Gh~~a~~~L~~a~~~gr--------l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c 92 (351)
T PRK09112 21 ENTRLFGHEEAEAFLAQAYREGK--------LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVW 92 (351)
T ss_pred chhhccCcHHHHHHHHHHHHcCC--------CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHH
Confidence 35679999999999998887432 1234899999999999999999999976321 11100 1111
Q ss_pred --cccc-cchhcccCCCCC--------CcccccccchhHHHH----cCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEc
Q 003094 600 --FMER-HTVSKLIGSPPG--------YVGYTEGGQLTEAVR----RRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTD 664 (848)
Q Consensus 600 --~~~~-~~~~~l~g~~~g--------~~g~~~~~~l~~~~~----~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~ 664 (848)
+... |.....+..+.. ..+.++.+.+.+.+. .+.+.|++|||+|.+++..+|.|++.||+.
T Consensus 93 ~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEp---- 168 (351)
T PRK09112 93 RQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEP---- 168 (351)
T ss_pred HHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcC----
Confidence 1000 000011111100 111111122333333 245679999999999999999999999982
Q ss_pred CCCceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHH
Q 003094 665 SKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLE 744 (848)
Q Consensus 665 ~~g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~e 744 (848)
..+++||+.|+.... +.|.+++|| ..+.|+|++.++
T Consensus 169 -------p~~~~fiLit~~~~~------------------------------------llptIrSRc-~~i~l~pl~~~~ 204 (351)
T PRK09112 169 -------PARALFILISHSSGR------------------------------------LLPTIRSRC-QPISLKPLDDDE 204 (351)
T ss_pred -------CCCceEEEEECChhh------------------------------------ccHHHHhhc-cEEEecCCCHHH
Confidence 256778887753221 348899999 899999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeEeecHHHHHHHHH
Q 003094 745 VKEIADIMLKEVFDRLKTKDIELQVTERFRERVVE 779 (848)
Q Consensus 745 l~~I~~~~l~~~~~~~~~~~~~l~i~~~a~~~l~~ 779 (848)
+.+++.... ....+++++...+..
T Consensus 205 ~~~~L~~~~-----------~~~~~~~~~~~~i~~ 228 (351)
T PRK09112 205 LKKALSHLG-----------SSQGSDGEITEALLQ 228 (351)
T ss_pred HHHHHHHhh-----------cccCCCHHHHHHHHH
Confidence 999987521 111156666666665
No 267
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.40 E-value=1.9e-11 Score=138.56 Aligned_cols=188 Identities=18% Similarity=0.239 Sum_probs=119.1
Q ss_pred CCCCcc-CChHHH--HHHHHHhccC-CCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccccccc
Q 003094 195 KLDPVV-GRQPQI--ERVVQILGRR-TKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKY 270 (848)
Q Consensus 195 ~ld~ii-G~~~~~--~~l~~~l~~~-~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~~~ 270 (848)
+||+++ |..+.. ....++...+ ..++++||||||+|||+|++++++.+.... .+..+++++...+... +
T Consensus 103 tFdnFv~g~~n~~a~~~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~-----~~~~v~yi~~~~f~~~--~ 175 (440)
T PRK14088 103 TFENFVVGPGNSFAYHAALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNE-----PDLRVMYITSEKFLND--L 175 (440)
T ss_pred cccccccCCchHHHHHHHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHhC-----CCCeEEEEEHHHHHHH--H
Confidence 577755 544432 2343443332 235688999999999999999999885421 1467888887654321 1
Q ss_pred cchH-HHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCCceEEEEeeChHHHHhhhhcChhhhc
Q 003094 271 RGEF-EERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATTLDEYRKHIEKDPALER 349 (848)
Q Consensus 271 ~g~~-~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~atn~~~~~~~~~~d~al~~ 349 (848)
.... ...+..+....+ ..+-+|+|||++.+.+.. ....++...+....+.+..++|++...+.... .+.+.+.+
T Consensus 176 ~~~~~~~~~~~f~~~~~-~~~dvLlIDDi~~l~~~~--~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~--~l~~rL~S 250 (440)
T PRK14088 176 VDSMKEGKLNEFREKYR-KKVDVLLIDDVQFLIGKT--GVQTELFHTFNELHDSGKQIVICSDREPQKLS--EFQDRLVS 250 (440)
T ss_pred HHHHhcccHHHHHHHHH-hcCCEEEEechhhhcCcH--HHHHHHHHHHHHHHHcCCeEEEECCCCHHHHH--HHHHHHhh
Confidence 0000 011222222222 234599999999885431 11234555566666666655555544444222 35789999
Q ss_pred ccC---CCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcc
Q 003094 350 RFQ---PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQY 398 (848)
Q Consensus 350 Rf~---~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~ 398 (848)
||. .+.|++|+.+.+..|++..++ ..++.++++.+.++++...+.
T Consensus 251 R~~~gl~v~i~~pd~e~r~~IL~~~~~----~~~~~l~~ev~~~Ia~~~~~~ 298 (440)
T PRK14088 251 RFQMGLVAKLEPPDEETRKKIARKMLE----IEHGELPEEVLNFVAENVDDN 298 (440)
T ss_pred HHhcCceEeeCCCCHHHHHHHHHHHHH----hcCCCCCHHHHHHHHhccccC
Confidence 996 789999999999999998776 357889999999998866553
No 268
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.40 E-value=7e-13 Score=125.14 Aligned_cols=116 Identities=31% Similarity=0.541 Sum_probs=86.4
Q ss_pred EEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhcccCCCCCCccccc--ccchhHHHHcCC-CeEEEEc
Q 003094 564 FIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTE--GGQLTEAVRRRP-YTVVLFD 640 (848)
Q Consensus 564 lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~~g~~~--~~~l~~~~~~~~-~~Vl~lD 640 (848)
+||+||||||||++|+.+|+.+ +.+++.++++.+.+. +.+... ...++..++... ++|||||
T Consensus 1 ill~G~~G~GKT~l~~~la~~l---~~~~~~i~~~~~~~~------------~~~~~~~~i~~~~~~~~~~~~~~vl~iD 65 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL---GFPFIEIDGSELISS------------YAGDSEQKIRDFFKKAKKSAKPCVLFID 65 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT---TSEEEEEETTHHHTS------------STTHHHHHHHHHHHHHHHTSTSEEEEEE
T ss_pred CEEECcCCCCeeHHHHHHHhhc---ccccccccccccccc------------cccccccccccccccccccccceeeeec
Confidence 6899999999999999999998 788999999887532 222211 133444455455 7999999
Q ss_pred CCCcCChHH-----------HHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHH
Q 003094 641 EIEKAHPDV-----------FNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYN 709 (848)
Q Consensus 641 Eid~l~~~~-----------~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~ 709 (848)
|+|.+.+.. ++.|+..+++..-. ..+++||+|||...
T Consensus 66 e~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~--------~~~~~vI~ttn~~~------------------------ 113 (132)
T PF00004_consen 66 EIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSK--------NSRVIVIATTNSPD------------------------ 113 (132)
T ss_dssp TGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTT--------SSSEEEEEEESSGG------------------------
T ss_pred cchhcccccccccccccccccceeeecccccccc--------cccceeEEeeCChh------------------------
Confidence 999997664 89999999874310 24689999998422
Q ss_pred HHHHHHHHHHHhhcChhhh-hccCeEEEcC
Q 003094 710 RIKSLVTEELKQYFRPEFL-NRLDEMIVFR 738 (848)
Q Consensus 710 ~~~~~~~~~l~~~~~~~ll-~R~d~~i~f~ 738 (848)
.+++.++ +||+..+.|+
T Consensus 114 ------------~i~~~l~~~rf~~~i~~~ 131 (132)
T PF00004_consen 114 ------------KIDPALLRSRFDRRIEFP 131 (132)
T ss_dssp ------------GSCHHHHSTTSEEEEEE-
T ss_pred ------------hCCHhHHhCCCcEEEEcC
Confidence 3678999 9998888875
No 269
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.40 E-value=5.5e-12 Score=126.72 Aligned_cols=197 Identities=17% Similarity=0.214 Sum_probs=148.0
Q ss_pred hhhhhhcCCCCCccCChHHHHHHHHHhccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCC---------CCCc--e
Q 003094 187 LTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDT---------IEGK--K 255 (848)
Q Consensus 187 l~~~~~~~~ld~iiG~~~~~~~l~~~l~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~---------l~~~--~ 255 (848)
|.++++|..++.++++++....+.........+|.++|||+|+||-|.+.++.+++....++.. -.+. +
T Consensus 3 Wvdkyrpksl~~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklE 82 (351)
T KOG2035|consen 3 WVDKYRPKSLDELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLE 82 (351)
T ss_pred chhhcCcchhhhcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEE
Confidence 7788999999999999999999988888788899999999999999999999999976444310 0111 1
Q ss_pred EEEEeCC--cccccccccch-HHHHHHHHHHHHHhC---------CCeEEEEcccchhhhCCCCCchHHHHHHHhhhhc-
Q 003094 256 VITLDMG--LLVAGTKYRGE-FEERLKKLMEEIKQS---------DEIILFIDEVHTLIGAGAAEGAIDAANILKPSLA- 322 (848)
Q Consensus 256 v~~~~~~--~l~~~~~~~g~-~~~~l~~l~~~~~~~---------~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~- 322 (848)
+-.+.-. .-+.+++ .|- -.--+.++++++.+. .-.+++|-|+|.| ..|++..|++.++
T Consensus 83 istvsS~yHlEitPSD-aG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~L--------T~dAQ~aLRRTMEk 153 (351)
T KOG2035|consen 83 ISTVSSNYHLEITPSD-AGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADEL--------TRDAQHALRRTMEK 153 (351)
T ss_pred EEEecccceEEeChhh-cCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhh--------hHHHHHHHHHHHHH
Confidence 1111000 0001111 111 122355666665432 2358999999999 5679999999998
Q ss_pred -CCceEEEEeeChHHHHhhhhcChhhhcccCCCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhccccc
Q 003094 323 -RGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISD 401 (848)
Q Consensus 323 -~~~v~vI~atn~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~ 401 (848)
.+.+.+|..+|... .+-+++++||-.|.+|.|+.++...++...+++ .++.+..+.+..+++.+.|....
T Consensus 154 Ys~~~RlIl~cns~S-----riIepIrSRCl~iRvpaps~eeI~~vl~~v~~k----E~l~lp~~~l~rIa~kS~~nLRr 224 (351)
T KOG2035|consen 154 YSSNCRLILVCNSTS-----RIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKK----EGLQLPKELLKRIAEKSNRNLRR 224 (351)
T ss_pred HhcCceEEEEecCcc-----cchhHHhhheeEEeCCCCCHHHHHHHHHHHHHH----hcccCcHHHHHHHHHHhcccHHH
Confidence 57788999998876 678999999999999999999999999998874 68888899999999988776443
No 270
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.39 E-value=2.3e-12 Score=136.42 Aligned_cols=160 Identities=20% Similarity=0.299 Sum_probs=108.1
Q ss_pred HHHHHHHHhccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccccccccchH---------H
Q 003094 205 QIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEF---------E 275 (848)
Q Consensus 205 ~~~~l~~~l~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~~~~g~~---------~ 275 (848)
.++++...+. ...++||+||||||||++|+.+|+.+ +.+++.+++..-.......|.. .
T Consensus 10 l~~~~l~~l~--~g~~vLL~G~~GtGKT~lA~~la~~l----------g~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~ 77 (262)
T TIGR02640 10 VTSRALRYLK--SGYPVHLRGPAGTGKTTLAMHVARKR----------DRPVMLINGDAELTTSDLVGSYAGYTRKKVHD 77 (262)
T ss_pred HHHHHHHHHh--cCCeEEEEcCCCCCHHHHHHHHHHHh----------CCCEEEEeCCccCCHHHHhhhhcccchhhHHH
Confidence 3444555444 35789999999999999999999977 5667777765422211111111 0
Q ss_pred HH----------------HHHHHHHHHhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCC---------------
Q 003094 276 ER----------------LKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARG--------------- 324 (848)
Q Consensus 276 ~~----------------l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~--------------- 324 (848)
.. -..++..+. .+.+|+|||++.+. .++++.|..+++.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~g~l~~A~~--~g~~lllDEi~r~~--------~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~ 147 (262)
T TIGR02640 78 QFIHNVVKLEDIVRQNWVDNRLTLAVR--EGFTLVYDEFTRSK--------PETNNVLLSVFEEGVLELPGKRGTSRYVD 147 (262)
T ss_pred HHHHHhhhhhcccceeecCchHHHHHH--cCCEEEEcchhhCC--------HHHHHHHHHHhcCCeEEccCCCCCCceEe
Confidence 00 011222222 23599999999973 45788888877532
Q ss_pred ---ceEEEEeeChHHHHhhhhcChhhhcccCCCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhh
Q 003094 325 ---ELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLS 395 (848)
Q Consensus 325 ---~v~vI~atn~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s 395 (848)
.+.+|+|+|+..+.....+++++.+||..+.++.|+.++..+|+.... .+.++..+.++++.
T Consensus 148 ~~~~frvIaTsN~~~~~g~~~l~~aL~~R~~~i~i~~P~~~~e~~Il~~~~---------~~~~~~~~~iv~~~ 212 (262)
T TIGR02640 148 VHPEFRVIFTSNPVEYAGVHETQDALLDRLITIFMDYPDIDTETAILRAKT---------DVAEDSAATIVRLV 212 (262)
T ss_pred cCCCCEEEEeeCCccccceecccHHHHhhcEEEECCCCCHHHHHHHHHHhh---------CCCHHHHHHHHHHH
Confidence 468999999887666567799999999999999999999999988542 24555555555543
No 271
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.39 E-value=1.2e-11 Score=135.46 Aligned_cols=201 Identities=18% Similarity=0.178 Sum_probs=136.2
Q ss_pred hhcCCCCCccCChHHHHHHHHHhccCCCCC-cEEECCCCCcHHHHHHHHHHHhhCCCC----CCCCC-------------
Q 003094 191 AEEGKLDPVVGRQPQIERVVQILGRRTKNN-PCLIGEPGVGKTAIAEGLAQRIASGDV----PDTIE------------- 252 (848)
Q Consensus 191 ~~~~~ld~iiG~~~~~~~l~~~l~~~~~~~-iLL~GppGtGKT~la~~la~~l~~~~~----~~~l~------------- 252 (848)
.+|..+++++|+++..+.+...+......| +||+||+|+|||++|+.+|+.+.+... |..+.
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i~ 96 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQIA 96 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHHH
Confidence 467889999999999999999998877776 788999999999999999999987321 11110
Q ss_pred ---CceEEEEeCC-cccccccccchHHHHHHHHHHHHH----hCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcC-
Q 003094 253 ---GKKVITLDMG-LLVAGTKYRGEFEERLKKLMEEIK----QSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR- 323 (848)
Q Consensus 253 ---~~~v~~~~~~-~l~~~~~~~g~~~~~l~~l~~~~~----~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~- 323 (848)
...++.+... ....+.....-....++.+.+.+. .++..|++|||+|.|. ....+.|+..++.
T Consensus 97 ~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~--------~~aanaLLk~LEEp 168 (351)
T PRK09112 97 QGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMN--------RNAANAILKTLEEP 168 (351)
T ss_pred cCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcC--------HHHHHHHHHHHhcC
Confidence 1112222211 000000001111233444443332 3456799999999994 4477888888874
Q ss_pred -CceEEEEeeChHHHHhhhhcChhhhcccCCCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccC
Q 003094 324 -GELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDR 402 (848)
Q Consensus 324 -~~v~vI~atn~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~ 402 (848)
....+|..|+.+. .+.|.+++||..+.|++|+.++..+++..... . ..++++.+..++..+.|.
T Consensus 169 p~~~~fiLit~~~~-----~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~----~--~~~~~~~~~~i~~~s~G~---- 233 (351)
T PRK09112 169 PARALFILISHSSG-----RLLPTIRSRCQPISLKPLDDDELKKALSHLGS----S--QGSDGEITEALLQRSKGS---- 233 (351)
T ss_pred CCCceEEEEECChh-----hccHHHHhhccEEEecCCCHHHHHHHHHHhhc----c--cCCCHHHHHHHHHHcCCC----
Confidence 3456666666655 56799999999999999999999998886321 1 126688888888877653
Q ss_pred CChhhHHHHHHHHh
Q 003094 403 FLPDKAIDLIDEAG 416 (848)
Q Consensus 403 ~~p~~a~~ll~~a~ 416 (848)
|..++.++....
T Consensus 234 --pr~Al~ll~~~~ 245 (351)
T PRK09112 234 --VRKALLLLNYGG 245 (351)
T ss_pred --HHHHHHHHhcCc
Confidence 667888776553
No 272
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.38 E-value=1.5e-11 Score=139.51 Aligned_cols=202 Identities=17% Similarity=0.152 Sum_probs=124.9
Q ss_pred CCCCCcc-CChHH--HHHHHHHhccC--CCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccccc
Q 003094 194 GKLDPVV-GRQPQ--IERVVQILGRR--TKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGT 268 (848)
Q Consensus 194 ~~ld~ii-G~~~~--~~~l~~~l~~~--~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~ 268 (848)
.+||+++ |..+. ...+..+...+ ..++++|+|++|+|||+|++++++.+.... .+..+++++...+...
T Consensus 112 ~tFdnFv~g~~n~~A~~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~-----~~~~v~yv~~~~f~~~- 185 (450)
T PRK14087 112 NTFENFVIGSSNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNF-----SDLKVSYMSGDEFARK- 185 (450)
T ss_pred cchhcccCCCcHHHHHHHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHHHHHHhC-----CCCeEEEEEHHHHHHH-
Confidence 4677755 54442 33333333322 235578999999999999999999875321 2567888887665421
Q ss_pred cccchHH---HHHHHHHHHHHhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCCceEEEEeeChHHHHhhhhcCh
Q 003094 269 KYRGEFE---ERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATTLDEYRKHIEKDP 345 (848)
Q Consensus 269 ~~~g~~~---~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~atn~~~~~~~~~~d~ 345 (848)
....+. ..+..+.+..+.. -+|+|||++.+.+. ......+..++....+.+..+|+.+..++... -.+++
T Consensus 186 -~~~~l~~~~~~~~~~~~~~~~~--dvLiIDDiq~l~~k--~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l--~~l~~ 258 (450)
T PRK14087 186 -AVDILQKTHKEIEQFKNEICQN--DVLIIDDVQFLSYK--EKTNEIFFTIFNNFIENDKQLFFSSDKSPELL--NGFDN 258 (450)
T ss_pred -HHHHHHHhhhHHHHHHHHhccC--CEEEEeccccccCC--HHHHHHHHHHHHHHHHcCCcEEEECCCCHHHH--hhccH
Confidence 111111 1222233333333 38999999988422 11223455666666666664444433344322 24689
Q ss_pred hhhcccC---CCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCChhhHHHHHHHHh
Q 003094 346 ALERRFQ---PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAG 416 (848)
Q Consensus 346 al~~Rf~---~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~p~~a~~ll~~a~ 416 (848)
.+.+||. .+.+.+|+.+++.+|++..++... ....++++++.+++..+.+. ++.+..++....
T Consensus 259 rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~g--l~~~l~~evl~~Ia~~~~gd------~R~L~gaL~~l~ 324 (450)
T PRK14087 259 RLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQN--IKQEVTEEAINFISNYYSDD------VRKIKGSVSRLN 324 (450)
T ss_pred HHHHHHhCCceeccCCcCHHHHHHHHHHHHHhcC--CCCCCCHHHHHHHHHccCCC------HHHHHHHHHHHH
Confidence 9999995 789999999999999998887421 11368999999999877664 334555555443
No 273
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=99.38 E-value=1e-12 Score=134.98 Aligned_cols=211 Identities=15% Similarity=0.183 Sum_probs=157.4
Q ss_pred CccchHHhhhhhhhhhhcCCCCCccCChHHHHHHHHHhccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCce
Q 003094 176 KMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKK 255 (848)
Q Consensus 176 ~~~~l~~~~~~l~~~~~~~~ld~iiG~~~~~~~l~~~l~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~ 255 (848)
..|.-.+|..+|.++++|..+++++++++.+..+.+.......+|.|+|||||+|||+...+.|..+.+..-+ ...
T Consensus 20 ~~p~~~~~~~pwvekyrP~~l~dv~~~~ei~st~~~~~~~~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~----~~m 95 (360)
T KOG0990|consen 20 YIPQSPQYPQPWVEKYRPPFLGIVIKQEPIWSTENRYSGMPGLPHLLFYGPPGTGKTSTILANARDFYSPHPT----TSM 95 (360)
T ss_pred CCCCCcccCCCCccCCCCchhhhHhcCCchhhHHHHhccCCCCCcccccCCCCCCCCCchhhhhhhhcCCCCc----hhH
Confidence 3556667888999999999999999999999999999888888899999999999999999999998652100 112
Q ss_pred EEEEeCCcccccccccchHHHHHHHHHHHHHh-------CCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhc--CCce
Q 003094 256 VITLDMGLLVAGTKYRGEFEERLKKLMEEIKQ-------SDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLA--RGEL 326 (848)
Q Consensus 256 v~~~~~~~l~~~~~~~g~~~~~l~~l~~~~~~-------~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~--~~~v 326 (848)
+.+++.++-.. .+-...+ ...|...+. .....+++||+|.+ ..++++.|++..+ ..++
T Consensus 96 ~lelnaSd~rg----id~vr~q-i~~fast~~~~~fst~~~fKlvILDEADaM--------T~~AQnALRRviek~t~n~ 162 (360)
T KOG0990|consen 96 LLELNASDDRG----IDPVRQQ-IHLFASTQQPTTYSTHAAFKLVILDEADAM--------TRDAQNALRRVIEKYTANT 162 (360)
T ss_pred HHHhhccCccC----CcchHHH-HHHHHhhccceeccccCceeEEEecchhHh--------hHHHHHHHHHHHHHhccce
Confidence 33444433221 1222222 233444332 25678999999999 4669999999887 4556
Q ss_pred EEEEeeChHHHHhhhhcChhhhcccCCCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCChh
Q 003094 327 QCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPD 406 (848)
Q Consensus 327 ~vI~atn~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~p~ 406 (848)
.++..+|++. .+.|++++||+.+.|.+.+..+....+..+++ .....++++...+++..+.+...
T Consensus 163 rF~ii~n~~~-----ki~pa~qsRctrfrf~pl~~~~~~~r~shi~e----~e~~~~~~~~~~a~~r~s~gDmr------ 227 (360)
T KOG0990|consen 163 RFATISNPPQ-----KIHPAQQSRCTRFRFAPLTMAQQTERQSHIRE----SEQKETNPEGYSALGRLSVGDMR------ 227 (360)
T ss_pred EEEEeccChh-----hcCchhhcccccCCCCCCChhhhhhHHHHHHh----cchhhcCHHHHHHHHHHhHHHHH------
Confidence 7777788887 68999999999999999999888888888776 46677888888888887766543
Q ss_pred hHHHHHHHHhhH
Q 003094 407 KAIDLIDEAGSR 418 (848)
Q Consensus 407 ~a~~ll~~a~~~ 418 (848)
++.+.|+.....
T Consensus 228 ~a~n~Lqs~~~~ 239 (360)
T KOG0990|consen 228 VALNYLQSILKK 239 (360)
T ss_pred HHHHHHHHHHHH
Confidence 467777665443
No 274
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.38 E-value=9.7e-12 Score=136.81 Aligned_cols=196 Identities=14% Similarity=0.184 Sum_probs=134.0
Q ss_pred hhcCCCCCccCChHHHHHHHHHhccCCCCC-cEEECCCCCcHHHHHHHHHHHhhCCCCCCC-------------------
Q 003094 191 AEEGKLDPVVGRQPQIERVVQILGRRTKNN-PCLIGEPGVGKTAIAEGLAQRIASGDVPDT------------------- 250 (848)
Q Consensus 191 ~~~~~ld~iiG~~~~~~~l~~~l~~~~~~~-iLL~GppGtGKT~la~~la~~l~~~~~~~~------------------- 250 (848)
.+|..+++++|++..++.+.+.+......| +||+||+|+||+++|..+|+.+.+......
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c 92 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVA 92 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHH
Confidence 478889999999999999999999888777 789999999999999999999976432110
Q ss_pred -----CCCceEEEEeCCcccccccccc-hHHHHHHHHHHHHH----hCCCeEEEEcccchhhhCCCCCchHHHHHHHhhh
Q 003094 251 -----IEGKKVITLDMGLLVAGTKYRG-EFEERLKKLMEEIK----QSDEIILFIDEVHTLIGAGAAEGAIDAANILKPS 320 (848)
Q Consensus 251 -----l~~~~v~~~~~~~l~~~~~~~g-~~~~~l~~l~~~~~----~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~ 320 (848)
.....++.+....-..+.+... -....++.+.+.+. .+++.|++|||+|.+. ....+.|++.
T Consensus 93 ~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~--------~~aanaLLK~ 164 (365)
T PRK07471 93 RRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMN--------ANAANALLKV 164 (365)
T ss_pred HHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcC--------HHHHHHHHHH
Confidence 1122334443211000100000 11234555554443 3567899999999994 4578889998
Q ss_pred hcC--CceEEEEeeChHHHHhhhhcChhhhcccCCCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcc
Q 003094 321 LAR--GELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQY 398 (848)
Q Consensus 321 l~~--~~v~vI~atn~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~ 398 (848)
++. +..++|.+|+.++ .+.+.+.+||+.+.|++|+.++..+++.... ....++.+..++.++.|-
T Consensus 165 LEepp~~~~~IL~t~~~~-----~llpti~SRc~~i~l~~l~~~~i~~~L~~~~--------~~~~~~~~~~l~~~s~Gs 231 (365)
T PRK07471 165 LEEPPARSLFLLVSHAPA-----RLLPTIRSRCRKLRLRPLAPEDVIDALAAAG--------PDLPDDPRAALAALAEGS 231 (365)
T ss_pred HhcCCCCeEEEEEECCch-----hchHHhhccceEEECCCCCHHHHHHHHHHhc--------ccCCHHHHHHHHHHcCCC
Confidence 885 4567777777766 4688999999999999999999988877432 223444445666666553
Q ss_pred cccCCChhhHHHHHH
Q 003094 399 ISDRFLPDKAIDLID 413 (848)
Q Consensus 399 ~~~~~~p~~a~~ll~ 413 (848)
|..+..+++
T Consensus 232 ------p~~Al~ll~ 240 (365)
T PRK07471 232 ------VGRALRLAG 240 (365)
T ss_pred ------HHHHHHHhc
Confidence 455666654
No 275
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.38 E-value=1.3e-12 Score=124.68 Aligned_cols=114 Identities=32% Similarity=0.538 Sum_probs=77.9
Q ss_pred EEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhcccCCCC---CCcccccccchhHHHHcCCCeEEEE
Q 003094 563 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPP---GYVGYTEGGQLTEAVRRRPYTVVLF 639 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~---g~~g~~~~~~l~~~~~~~~~~Vl~l 639 (848)
+++|+||||||||++|+.+|+.+ +.++..+.|+...+. .+|+|... +...+ ..+.+..+++ .++|+||
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~---~~~~~~i~~~~~~~~---~dl~g~~~~~~~~~~~-~~~~l~~a~~--~~~il~l 71 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALL---GRPVIRINCSSDTTE---EDLIGSYDPSNGQFEF-KDGPLVRAMR--KGGILVL 71 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH---TCEEEEEE-TTTSTH---HHHHCEEET-TTTTCE-EE-CCCTTHH--EEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHh---hcceEEEEecccccc---ccceeeeeeccccccc-cccccccccc--ceeEEEE
Confidence 48999999999999999999998 788988988876543 34444311 11111 1133444444 4679999
Q ss_pred cCCCcCChHHHHHHHhhhcCcEEEcCCC-ceeecC-------CeEEEEecCCCc
Q 003094 640 DEIEKAHPDVFNMMLQILEDGRLTDSKG-RTVDFK-------NTLLIMTSNVGS 685 (848)
Q Consensus 640 DEid~l~~~~~~~Ll~~le~g~~~~~~g-~~v~~~-------~~iiI~tsN~~~ 685 (848)
||++++++++++.|+.+++++++....+ ...... +++||+|+|...
T Consensus 72 DEin~a~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~ 125 (139)
T PF07728_consen 72 DEINRAPPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRD 125 (139)
T ss_dssp SSCGG--HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST
T ss_pred CCcccCCHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCC
Confidence 9999999999999999999988774433 333333 389999999544
No 276
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.38 E-value=7.8e-13 Score=129.24 Aligned_cols=151 Identities=26% Similarity=0.383 Sum_probs=91.8
Q ss_pred ChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCce-EEecccc---cccc-cchhcc
Q 003094 535 GQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAM-IRLDMSE---FMER-HTVSKL 609 (848)
Q Consensus 535 gq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~-i~i~~~~---~~~~-~~~~~l 609 (848)
||+.+++.+.+.+...+ -.+.+||+||+|+||+++|+.+|+.+++....- ..-.|.. +... +.....
T Consensus 1 gq~~~~~~L~~~~~~~~--------l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~ 72 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGR--------LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFII 72 (162)
T ss_dssp S-HHHHHHHHHHHHCTC----------SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEE
T ss_pred CcHHHHHHHHHHHHcCC--------cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEE
Confidence 78899888888886432 123489999999999999999999997654331 1111111 1111 111111
Q ss_pred cCCCCC--CcccccccchhHHHH----cCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCC
Q 003094 610 IGSPPG--YVGYTEGGQLTEAVR----RRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNV 683 (848)
Q Consensus 610 ~g~~~g--~~g~~~~~~l~~~~~----~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~ 683 (848)
+..... ..+.+..+.+.+.+. .+++.|++|||+|+++.+++|+||+.||+ +..+++||++|+.
T Consensus 73 ~~~~~~~~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEe-----------pp~~~~fiL~t~~ 141 (162)
T PF13177_consen 73 IKPDKKKKSIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEE-----------PPENTYFILITNN 141 (162)
T ss_dssp EETTTSSSSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHS-----------TTTTEEEEEEES-
T ss_pred EecccccchhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcC-----------CCCCEEEEEEECC
Confidence 211111 111111122222222 24577999999999999999999999998 3478999999974
Q ss_pred CchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCC
Q 003094 684 GSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLT 741 (848)
Q Consensus 684 ~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~ 741 (848)
... +.|.+++|| ..+.|+|++
T Consensus 142 ~~~------------------------------------il~TI~SRc-~~i~~~~ls 162 (162)
T PF13177_consen 142 PSK------------------------------------ILPTIRSRC-QVIRFRPLS 162 (162)
T ss_dssp GGG------------------------------------S-HHHHTTS-EEEEE----
T ss_pred hHH------------------------------------ChHHHHhhc-eEEecCCCC
Confidence 443 458999999 999999875
No 277
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.38 E-value=5.4e-12 Score=149.48 Aligned_cols=162 Identities=24% Similarity=0.392 Sum_probs=114.8
Q ss_pred hccccChHHHHHHHHHHHHHHH-------ccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEeccccccc
Q 003094 530 HKRVIGQDEAVKAISRAIRRAR-------VGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFME 602 (848)
Q Consensus 530 ~~~vigq~~~~~~l~~~~~~~~-------~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~ 602 (848)
+.++.|.+.+++.+.+.+.... .+... | .+++|+||||||||++|++++..+ +.+|+.++++++..
T Consensus 151 ~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~---~-~gill~G~~G~GKt~~~~~~a~~~---~~~f~~is~~~~~~ 223 (644)
T PRK10733 151 FADVAGCDEAKEEVAELVEYLREPSRFQKLGGKI---P-KGVLMVGPPGTGKTLLAKAIAGEA---KVPFFTISGSDFVE 223 (644)
T ss_pred HHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCC---C-CcEEEECCCCCCHHHHHHHHHHHc---CCCEEEEehHHhHH
Confidence 3456666666666665554321 12121 2 249999999999999999999987 78899998887643
Q ss_pred ccchhcccCCCCCCccccc--ccchhHHHHcCCCeEEEEcCCCcCCh--------------HHHHHHHhhhcCcEEEcCC
Q 003094 603 RHTVSKLIGSPPGYVGYTE--GGQLTEAVRRRPYTVVLFDEIEKAHP--------------DVFNMMLQILEDGRLTDSK 666 (848)
Q Consensus 603 ~~~~~~l~g~~~g~~g~~~--~~~l~~~~~~~~~~Vl~lDEid~l~~--------------~~~~~Ll~~le~g~~~~~~ 666 (848)
. ++|... ...++..++...++||||||+|.+.. .+++.|+..|+.-.
T Consensus 224 ~------------~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~----- 286 (644)
T PRK10733 224 M------------FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFE----- 286 (644)
T ss_pred h------------hhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhccc-----
Confidence 2 222211 24456666777789999999998732 36777887776522
Q ss_pred CceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhh--hccCeEEEcCCCCHHH
Q 003094 667 GRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFL--NRLDEMIVFRQLTKLE 744 (848)
Q Consensus 667 g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll--~R~d~~i~f~~l~~~e 744 (848)
...++++|+|||... .++|+++ +|||..|.|+.++.++
T Consensus 287 ----~~~~vivIaaTN~p~------------------------------------~lD~Al~RpgRfdr~i~v~~Pd~~~ 326 (644)
T PRK10733 287 ----GNEGIIVIAATNRPD------------------------------------VLDPALLRPGRFDRQVVVGLPDVRG 326 (644)
T ss_pred ----CCCCeeEEEecCChh------------------------------------hcCHHHhCCcccceEEEcCCCCHHH
Confidence 124678999998433 2567787 4999999999999999
Q ss_pred HHHHHHHHHHH
Q 003094 745 VKEIADIMLKE 755 (848)
Q Consensus 745 l~~I~~~~l~~ 755 (848)
..+|++.++.+
T Consensus 327 R~~Il~~~~~~ 337 (644)
T PRK10733 327 REQILKVHMRR 337 (644)
T ss_pred HHHHHHHHhhc
Confidence 99999887754
No 278
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.37 E-value=1.5e-11 Score=140.02 Aligned_cols=248 Identities=17% Similarity=0.186 Sum_probs=138.5
Q ss_pred hccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccc---cc-
Q 003094 530 HKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMER---HT- 605 (848)
Q Consensus 530 ~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~---~~- 605 (848)
+.+++||..+++.+..++. + ..+++|.||||||||++|+.++..+..... -..++...+..- ..
T Consensus 191 ~~dv~Gq~~~~~al~~aa~----~-------g~~vlliG~pGsGKTtlar~l~~llp~~~~-~~~le~~~i~s~~g~~~~ 258 (499)
T TIGR00368 191 LKDIKGQQHAKRALEIAAA----G-------GHNLLLFGPPGSGKTMLASRLQGILPPLTN-EEAIETARIWSLVGKLID 258 (499)
T ss_pred HHHhcCcHHHHhhhhhhcc----C-------CCEEEEEecCCCCHHHHHHHHhcccCCCCC-cEEEeccccccchhhhcc
Confidence 3568999888666554432 1 135999999999999999999987632111 112222221100 00
Q ss_pred ---h-hccc------CCCCCCcccccccchhHHHHcCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEE--cCCCceeecC
Q 003094 606 ---V-SKLI------GSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLT--DSKGRTVDFK 673 (848)
Q Consensus 606 ---~-~~l~------g~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~--~~~g~~v~~~ 673 (848)
. ..-| .+....+|.. ...-.+.+..++++||||||++.+++.+++.|++.||++.++ ..++......
T Consensus 259 ~~~~~~~Pf~~p~~s~s~~~~~ggg-~~~~pG~i~lA~~GvLfLDEi~e~~~~~~~~L~~~LE~~~v~i~r~g~~~~~pa 337 (499)
T TIGR00368 259 RKQIKQRPFRSPHHSASKPALVGGG-PIPLPGEISLAHNGVLFLDELPEFKRSVLDALREPIEDGSISISRASAKIFYPA 337 (499)
T ss_pred ccccccCCccccccccchhhhhCCc-cccchhhhhccCCCeEecCChhhCCHHHHHHHHHHHHcCcEEEEecCcceeccC
Confidence 0 0000 0000011100 011234567788999999999999999999999999999864 3334444457
Q ss_pred CeEEEEecCCCchhhhccCcccccccC-CCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHH-----
Q 003094 674 NTLLIMTSNVGSSVIEKGGRRIGFDLD-YDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKE----- 747 (848)
Q Consensus 674 ~~iiI~tsN~~~~~i~~~~~~~~f~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~----- 747 (848)
++.+|+++|.. .||+-.+ ...-..+... ...-...++.+|++|||-.+.+++++.+++.+
T Consensus 338 ~frlIaa~Npc---------pcg~~~~~~~~c~c~~~~-----~~~y~~~is~pllDR~dl~~~~~~~~~~~l~~~~~~e 403 (499)
T TIGR00368 338 RFQLVAAMNPC---------PCGHYGGKNTHCRCSPQQ-----ISRYWNKLSGPFLDRIDLSVEVPLLPPEKLLSTGSGE 403 (499)
T ss_pred CeEEEEecCCc---------ccCcCCCCcccccCCHHH-----HHHHhhhccHhHHhhCCEEEEEcCCCHHHHhccCCCC
Confidence 99999999842 2332111 0001111111 11123357899999999999999987665522
Q ss_pred ----HHHHHH---HHHHHHHhcCC-Ce-------------EeecHHHHHHHHHccCCCCCCchHHHHHHHHHHHHHHHHH
Q 003094 748 ----IADIML---KEVFDRLKTKD-IE-------------LQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSMAEK 806 (848)
Q Consensus 748 ----I~~~~l---~~~~~~~~~~~-~~-------------l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~l~~~l~~~ 806 (848)
+-+++. ....+++.... .. ..+++++.+.|....-.-..++|...+.++ +...+++.
T Consensus 404 ~s~~ir~rV~~Ar~~q~~R~~~~~~~~~N~~l~~~~l~~~~~l~~~~~~~l~~a~~~~~lS~R~~~rilr--vArTiAdL 481 (499)
T TIGR00368 404 SSAEVKQRVIKAREIQNIRYEKFANINKNADLNSDEIEQFCKLSAIDANDLEGALNKLGLSSRATHRILK--VARTIADL 481 (499)
T ss_pred CHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCHHHHHhhcCCCHHHHHHHHHHHHhcCCCchHHHHHHH--HHHHHHhh
Confidence 222222 22223332110 01 234666666665432223457788877776 55556554
No 279
>PRK08727 hypothetical protein; Validated
Probab=99.37 E-value=3.1e-11 Score=125.55 Aligned_cols=177 Identities=15% Similarity=0.213 Sum_probs=115.9
Q ss_pred CCCCccCCh-HHHHHHHHHhccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccccccccch
Q 003094 195 KLDPVVGRQ-PQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGE 273 (848)
Q Consensus 195 ~ld~iiG~~-~~~~~l~~~l~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~~~~g~ 273 (848)
+||++++.. +.+..+...........++|+||+|||||++++++++.+... +..+.++++..+.
T Consensus 17 ~f~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~-------~~~~~y~~~~~~~-------- 81 (233)
T PRK08727 17 RFDSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQA-------GRSSAYLPLQAAA-------- 81 (233)
T ss_pred ChhhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc-------CCcEEEEeHHHhh--------
Confidence 577665444 444444444333444568999999999999999999987542 4556666654322
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCCceEEEEeeChHHHHhhhhcChhhhccc--
Q 003094 274 FEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATTLDEYRKHIEKDPALERRF-- 351 (848)
Q Consensus 274 ~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~atn~~~~~~~~~~d~al~~Rf-- 351 (848)
..+...++...... +|+|||++.+.... .....+.+.+....+++ ..+|.+++.... ..-.+++.+.+||
T Consensus 82 --~~~~~~~~~l~~~d--lLiIDDi~~l~~~~--~~~~~lf~l~n~~~~~~-~~vI~ts~~~p~-~l~~~~~dL~SRl~~ 153 (233)
T PRK08727 82 --GRLRDALEALEGRS--LVALDGLESIAGQR--EDEVALFDFHNRARAAG-ITLLYTARQMPD-GLALVLPDLRSRLAQ 153 (233)
T ss_pred --hhHHHHHHHHhcCC--EEEEeCcccccCCh--HHHHHHHHHHHHHHHcC-CeEEEECCCChh-hhhhhhHHHHHHHhc
Confidence 23444555555444 89999999885321 11223334444443444 445555553221 1123579999997
Q ss_pred -CCCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcc
Q 003094 352 -QPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQY 398 (848)
Q Consensus 352 -~~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~ 398 (848)
..+.+++|+.+++.+|++..+.. .++.++++++.++++.+.|.
T Consensus 154 ~~~~~l~~~~~e~~~~iL~~~a~~----~~l~l~~e~~~~La~~~~rd 197 (233)
T PRK08727 154 CIRIGLPVLDDVARAAVLRERAQR----RGLALDEAAIDWLLTHGERE 197 (233)
T ss_pred CceEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHhCCCC
Confidence 37899999999999999987663 47889999999999987654
No 280
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=9.3e-13 Score=132.64 Aligned_cols=165 Identities=25% Similarity=0.382 Sum_probs=118.2
Q ss_pred HHhhccccChHHHHHHHHHHHHHH--------HccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEeccc
Q 003094 527 ETLHKRVIGQDEAVKAISRAIRRA--------RVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMS 598 (848)
Q Consensus 527 ~~l~~~vigq~~~~~~l~~~~~~~--------~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~ 598 (848)
.....++-|.+..++.|.+.++.. ..|+++|. .++|||+||||||.||+++|+.- ...|+++-.+
T Consensus 181 ~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPK----GVIlyG~PGTGKTLLAKAVANqT---SATFlRvvGs 253 (440)
T KOG0726|consen 181 QETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPK----GVILYGEPGTGKTLLAKAVANQT---SATFLRVVGS 253 (440)
T ss_pred hhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCC----eeEEeCCCCCchhHHHHHHhccc---chhhhhhhhH
Confidence 344567889999999998888543 23555543 48999999999999999999764 5666666555
Q ss_pred ccccccchhcccCCCCCCcccccc--cchhHHHHcCCCeEEEEcCCCcCC-----------hHHHHHHHhhhcCcEEEcC
Q 003094 599 EFMERHTVSKLIGSPPGYVGYTEG--GQLTEAVRRRPYTVVLFDEIEKAH-----------PDVFNMMLQILEDGRLTDS 665 (848)
Q Consensus 599 ~~~~~~~~~~l~g~~~g~~g~~~~--~~l~~~~~~~~~~Vl~lDEid~l~-----------~~~~~~Ll~~le~g~~~~~ 665 (848)
++... |.|.... +.+|..+....++|+||||||.+. .++|..+|.+|..---.|.
T Consensus 254 eLiQk------------ylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFds 321 (440)
T KOG0726|consen 254 ELIQK------------YLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDS 321 (440)
T ss_pred HHHHH------------HhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccc
Confidence 55332 4443222 567888888888999999999773 3577777777643110111
Q ss_pred CCceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhh--hccCeEEEcCCCCHH
Q 003094 666 KGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFL--NRLDEMIVFRQLTKL 743 (848)
Q Consensus 666 ~g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll--~R~d~~i~f~~l~~~ 743 (848)
-.++-+||+||.-. .++|+|+ +|+|..|.|+.+++.
T Consensus 322 ------rgDvKvimATnrie------------------------------------~LDPaLiRPGrIDrKIef~~pDe~ 359 (440)
T KOG0726|consen 322 ------RGDVKVIMATNRIE------------------------------------TLDPALIRPGRIDRKIEFPLPDEK 359 (440)
T ss_pred ------cCCeEEEEeccccc------------------------------------ccCHhhcCCCccccccccCCCchh
Confidence 24778999998322 2678887 799999999999999
Q ss_pred HHHHHHHHH
Q 003094 744 EVKEIADIM 752 (848)
Q Consensus 744 el~~I~~~~ 752 (848)
..+.|+...
T Consensus 360 TkkkIf~IH 368 (440)
T KOG0726|consen 360 TKKKIFQIH 368 (440)
T ss_pred hhceeEEEe
Confidence 888887433
No 281
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.36 E-value=1.6e-11 Score=135.90 Aligned_cols=187 Identities=22% Similarity=0.335 Sum_probs=124.6
Q ss_pred CccCChHHHHHHHHHhc-----------cC-------CCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEE
Q 003094 198 PVVGRQPQIERVVQILG-----------RR-------TKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITL 259 (848)
Q Consensus 198 ~iiG~~~~~~~l~~~l~-----------~~-------~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~ 259 (848)
.++|+++.++.+...+. .. ...++||+||||||||++|+.+|+.+ +.++..+
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l----------~~pf~~~ 147 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARIL----------NVPFAIA 147 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhc----------CCCeEEe
Confidence 37999999998766541 11 13689999999999999999999887 4567777
Q ss_pred eCCcccccccccch-HHHHHHHHHHH----HHhCCCeEEEEcccchhhhCCCCC------chHHHHHHHhhhhcC-----
Q 003094 260 DMGLLVAGTKYRGE-FEERLKKLMEE----IKQSDEIILFIDEVHTLIGAGAAE------GAIDAANILKPSLAR----- 323 (848)
Q Consensus 260 ~~~~l~~~~~~~g~-~~~~l~~l~~~----~~~~~~~IL~IDEid~l~~~~~~~------~~~~~~~~L~~~l~~----- 323 (848)
++..+.. ..|.|. .+..+..++.. +....++||||||+|.+.+..... ....+++.|+++++.
T Consensus 148 da~~L~~-~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v 226 (413)
T TIGR00382 148 DATTLTE-AGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANV 226 (413)
T ss_pred chhhccc-cccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceec
Confidence 7766542 236665 34444444432 234557799999999997642211 122577888887741
Q ss_pred ----------CceEEEEeeChH-------------------------------------HHHh--------hhhcChhhh
Q 003094 324 ----------GELQCIGATTLD-------------------------------------EYRK--------HIEKDPALE 348 (848)
Q Consensus 324 ----------~~v~vI~atn~~-------------------------------------~~~~--------~~~~d~al~ 348 (848)
.+.++|.|+|-. +... .+.+.|+|.
T Consensus 227 ~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEfl 306 (413)
T TIGR00382 227 PPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFI 306 (413)
T ss_pred ccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHh
Confidence 124566666640 0000 112458999
Q ss_pred cccC-CCcCCCCCHHHHHHHHHH----HHHHHhh-----hhcCCCChHHHHHHHhhh
Q 003094 349 RRFQ-PVKVPEPSVDETIQILKG----LRERYEI-----HHKLRYTDEALVSAAQLS 395 (848)
Q Consensus 349 ~Rf~-~i~~~~p~~~e~~~Il~~----~~~~~~~-----~~~~~~s~~~l~~l~~~s 395 (848)
.|++ .+.|.+++.+++.+|+.. +.+++.. .-.+.+++++++.+++.+
T Consensus 307 gRld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~ 363 (413)
T TIGR00382 307 GRLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKA 363 (413)
T ss_pred CCCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhC
Confidence 9997 778999999999999886 3444432 223468899999998863
No 282
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=3.5e-12 Score=130.59 Aligned_cols=148 Identities=26% Similarity=0.370 Sum_probs=112.1
Q ss_pred CcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccccccccchHHHHHHHHHHHHHh---C--CCeEEE
Q 003094 220 NPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQ---S--DEIILF 294 (848)
Q Consensus 220 ~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~~~~g~~~~~l~~l~~~~~~---~--~~~IL~ 294 (848)
=+||+||||||||++++++|+.+.-. ..+......+++++..++. +||-++..+.+.++|+.+.. . .-+.++
T Consensus 179 liLlhGPPGTGKTSLCKaLaQkLSIR-~~~~y~~~~liEinshsLF--SKWFsESgKlV~kmF~kI~ELv~d~~~lVfvL 255 (423)
T KOG0744|consen 179 LILLHGPPGTGKTSLCKALAQKLSIR-TNDRYYKGQLIEINSHSLF--SKWFSESGKLVAKMFQKIQELVEDRGNLVFVL 255 (423)
T ss_pred EEEEeCCCCCChhHHHHHHHHhheee-ecCccccceEEEEehhHHH--HHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEE
Confidence 37899999999999999999988532 1122335678889988888 78989988899999888753 2 234566
Q ss_pred EcccchhhhCCC----CC---chHHHHHHHhhhhc----CCceEEEEeeChHHHHhhhhcChhhhcccC-CCcCCCCCHH
Q 003094 295 IDEVHTLIGAGA----AE---GAIDAANILKPSLA----RGELQCIGATTLDEYRKHIEKDPALERRFQ-PVKVPEPSVD 362 (848)
Q Consensus 295 IDEid~l~~~~~----~~---~~~~~~~~L~~~l~----~~~v~vI~atn~~~~~~~~~~d~al~~Rf~-~i~~~~p~~~ 362 (848)
|||++.|..++. .+ ....++|.++.-++ ..++.+++|+|-.+ .+|.++..|-+ ..++.+|+.+
T Consensus 256 IDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~-----siD~AfVDRADi~~yVG~Pt~~ 330 (423)
T KOG0744|consen 256 IDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTD-----SIDVAFVDRADIVFYVGPPTAE 330 (423)
T ss_pred eHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHH-----HHHHHhhhHhhheeecCCccHH
Confidence 999999975431 22 23456666665554 56677777777776 68999999998 7899999999
Q ss_pred HHHHHHHHHHHHH
Q 003094 363 ETIQILKGLRERY 375 (848)
Q Consensus 363 e~~~Il~~~~~~~ 375 (848)
.+++|++..+..+
T Consensus 331 ai~~IlkscieEL 343 (423)
T KOG0744|consen 331 AIYEILKSCIEEL 343 (423)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999877654
No 283
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=3.5e-12 Score=137.68 Aligned_cols=156 Identities=18% Similarity=0.267 Sum_probs=109.4
Q ss_pred cCCCCCccCChHHHHHHHH----H---------hccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEE
Q 003094 193 EGKLDPVVGRQPQIERVVQ----I---------LGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITL 259 (848)
Q Consensus 193 ~~~ld~iiG~~~~~~~l~~----~---------l~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~ 259 (848)
|.+|+.++=..+.+++|.+ + .+.+.+++.|||||||||||+++.++|+.| +..|+-+
T Consensus 197 pstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L----------~ydIydL 266 (457)
T KOG0743|consen 197 PSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYL----------NYDIYDL 266 (457)
T ss_pred CCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhc----------CCceEEe
Confidence 3456665544444444433 3 345789999999999999999999999999 5678888
Q ss_pred eCCcccccccccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCCch--------------HHHHHHHhhhhc--C
Q 003094 260 DMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGA--------------IDAANILKPSLA--R 323 (848)
Q Consensus 260 ~~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~~~--------------~~~~~~L~~~l~--~ 323 (848)
+++...... .++.++-... ..+||+|+|||.-+........ ..++|.+..+-. .
T Consensus 267 eLt~v~~n~--------dLr~LL~~t~--~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg 336 (457)
T KOG0743|consen 267 ELTEVKLDS--------DLRHLLLATP--NKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCG 336 (457)
T ss_pred eeccccCcH--------HHHHHHHhCC--CCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCC
Confidence 876654321 1677766544 3569999999988643211110 113333333322 3
Q ss_pred CceEEEEeeChHHHHhhhhcChhhhc--ccC-CCcCCCCCHHHHHHHHHHHHH
Q 003094 324 GELQCIGATTLDEYRKHIEKDPALER--RFQ-PVKVPEPSVDETIQILKGLRE 373 (848)
Q Consensus 324 ~~v~vI~atn~~~~~~~~~~d~al~~--Rf~-~i~~~~p~~~e~~~Il~~~~~ 373 (848)
++-++|.|||..+ .+||||.| |++ +|++...+.++...+...++.
T Consensus 337 ~ERIivFTTNh~E-----kLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~ 384 (457)
T KOG0743|consen 337 DERIIVFTTNHKE-----KLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLG 384 (457)
T ss_pred CceEEEEecCChh-----hcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcC
Confidence 4789999999999 79999999 897 899999999987777665553
No 284
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.36 E-value=1.3e-11 Score=133.40 Aligned_cols=163 Identities=20% Similarity=0.306 Sum_probs=103.3
Q ss_pred cCCCCCccCChHHHHHHHHHhccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCC-------C---------C---
Q 003094 193 EGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTI-------E---------G--- 253 (848)
Q Consensus 193 ~~~ld~iiG~~~~~~~l~~~l~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l-------~---------~--- 253 (848)
+..|++++|+++.++.+.-.+-.....|+||.|+||+|||++|+++++.+..-...+.+ . +
T Consensus 4 ~~~f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 83 (334)
T PRK13407 4 PFPFSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWAHVSSTTM 83 (334)
T ss_pred CCCHHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCcccccccCCcc
Confidence 45688899999999987755443445789999999999999999999998531111110 0 0
Q ss_pred ----ceEEEEeC----CcccccccccchHHHHHHH---HH--HHHHhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhh
Q 003094 254 ----KKVITLDM----GLLVAGTKYRGEFEERLKK---LM--EEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPS 320 (848)
Q Consensus 254 ----~~v~~~~~----~~l~~~~~~~g~~~~~l~~---l~--~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~ 320 (848)
.++..+.. ..+.++. +++..+.. .+ ..+......+||+||++.+. .+.++.|...
T Consensus 84 ~~~~~p~~~~p~~~t~~~l~G~~----d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~--------~~~q~~Lle~ 151 (334)
T PRK13407 84 IERPTPVVDLPLGVTEDRVVGAL----DIERALTRGEKAFEPGLLARANRGYLYIDEVNLLE--------DHIVDLLLDV 151 (334)
T ss_pred cccCCccccCCCCCCcceeecch----hhhhhhhcCCeeecCCceEEcCCCeEEecChHhCC--------HHHHHHHHHH
Confidence 01110100 0011100 01111000 00 11112334699999999984 4577888887
Q ss_pred hcCC---------------ceEEEEeeChHHHHhhhhcChhhhcccC-CCcCCCCCH-HHHHHHHHHH
Q 003094 321 LARG---------------ELQCIGATTLDEYRKHIEKDPALERRFQ-PVKVPEPSV-DETIQILKGL 371 (848)
Q Consensus 321 l~~~---------------~v~vI~atn~~~~~~~~~~d~al~~Rf~-~i~~~~p~~-~e~~~Il~~~ 371 (848)
++.+ .+++|+++|+.+. .+.+++..||. .|.+++|.. +++.+|+...
T Consensus 152 mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~----~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~ 215 (334)
T PRK13407 152 AQSGENVVEREGLSIRHPARFVLVGSGNPEEG----ELRPQLLDRFGLSVEVRSPRDVETRVEVIRRR 215 (334)
T ss_pred HHcCCeEEEECCeEEecCCCEEEEecCCcccC----CCCHHHHhhcceEEEcCCCCcHHHHHHHHHHh
Confidence 7643 3788888887653 58899999997 788888766 8889998864
No 285
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.35 E-value=1.3e-11 Score=134.51 Aligned_cols=158 Identities=22% Similarity=0.304 Sum_probs=107.2
Q ss_pred hccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhcc
Q 003094 530 HKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 609 (848)
Q Consensus 530 ~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l 609 (848)
+++++||+.+++.+.+.+... +..+.+||+||+|+|||++|+.+|+.+++....-...|+..+
T Consensus 3 ~~~i~g~~~~~~~l~~~~~~~--------~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~--------- 65 (313)
T PRK05564 3 FHTIIGHENIKNRIKNSIIKN--------RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEF--------- 65 (313)
T ss_pred hhhccCcHHHHHHHHHHHHcC--------CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEe---------
Confidence 567899999999988887532 222358999999999999999999998653211000111111
Q ss_pred cCCCCCCcccccccchhHHHHc----CCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCc
Q 003094 610 IGSPPGYVGYTEGGQLTEAVRR----RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGS 685 (848)
Q Consensus 610 ~g~~~g~~g~~~~~~l~~~~~~----~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~ 685 (848)
........+.++.+.+.+.+.. +.+.|++||++|+++.+.+|.|++.||+ ++.+++||++|+...
T Consensus 66 ~~~~~~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEe-----------pp~~t~~il~~~~~~ 134 (313)
T PRK05564 66 KPINKKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEE-----------PPKGVFIILLCENLE 134 (313)
T ss_pred ccccCCCCCHHHHHHHHHHHhcCcccCCceEEEEechhhcCHHHHHHHHHHhcC-----------CCCCeEEEEEeCChH
Confidence 0000001111111222222222 4467999999999999999999999998 346788888875222
Q ss_pred hhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHHHH
Q 003094 686 SVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIM 752 (848)
Q Consensus 686 ~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~~~ 752 (848)
.+.|.+++|| .++.|.+++.+++...+...
T Consensus 135 ------------------------------------~ll~TI~SRc-~~~~~~~~~~~~~~~~l~~~ 164 (313)
T PRK05564 135 ------------------------------------QILDTIKSRC-QIYKLNRLSKEEIEKFISYK 164 (313)
T ss_pred ------------------------------------hCcHHHHhhc-eeeeCCCcCHHHHHHHHHHH
Confidence 2458899999 89999999999988777543
No 286
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.35 E-value=3.8e-11 Score=132.33 Aligned_cols=232 Identities=19% Similarity=0.314 Sum_probs=140.6
Q ss_pred ccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhccc
Q 003094 531 KRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLI 610 (848)
Q Consensus 531 ~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~ 610 (848)
+++++.+..++.+...+... .+++|+||||||||++|+.+|..+.+ ...+..+++-.+....+...++
T Consensus 175 ~d~~i~e~~le~l~~~L~~~-----------~~iil~GppGtGKT~lA~~la~~l~~-~~~~~~v~~VtFHpsySYeDFI 242 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK-----------KNIILQGPPGVGKTFVARRLAYLLTG-EKAPQRVNMVQFHQSYSYEDFI 242 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC-----------CCEEEECCCCCCHHHHHHHHHHHhcC-CcccceeeEEeecccccHHHHh
Confidence 45777777777777666531 25899999999999999999998854 3345566666666666666666
Q ss_pred -CCCCCCcccccc-cchhHH---HHcC--CCeEEEEcCCCcCChH-HHHHHHhhhcCcE------EE----cCC-Cceee
Q 003094 611 -GSPPGYVGYTEG-GQLTEA---VRRR--PYTVVLFDEIEKAHPD-VFNMMLQILEDGR------LT----DSK-GRTVD 671 (848)
Q Consensus 611 -g~~~g~~g~~~~-~~l~~~---~~~~--~~~Vl~lDEid~l~~~-~~~~Ll~~le~g~------~~----~~~-g~~v~ 671 (848)
|..++++|+... +.+.++ +... .+.|||||||+.++++ ++..++++||... +. ..+ ..-..
T Consensus 243 ~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~i 322 (459)
T PRK11331 243 QGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYV 322 (459)
T ss_pred cccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhccccccccccceeeeccccccccccC
Confidence 666777776543 333333 3332 3689999999999965 6899999999642 11 111 12234
Q ss_pred cCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCC-CCHHHHHHH--
Q 003094 672 FKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQ-LTKLEVKEI-- 748 (848)
Q Consensus 672 ~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~-l~~~el~~I-- 748 (848)
+.|+.||+|+|....-+ ..++.+|++|| ..|.+.| ++...+...
T Consensus 323 P~Nl~IIgTMNt~Drs~--------------------------------~~lD~AlrRRF-~fi~i~p~~~~~~~~~~l~ 369 (459)
T PRK11331 323 PENVYIIGLMNTADRSL--------------------------------AVVDYALRRRF-SFIDIEPGFDTPQFRNFLL 369 (459)
T ss_pred CCCeEEEEecCccccch--------------------------------hhccHHHHhhh-heEEecCCCChHHHHHHHH
Confidence 57999999999544311 13678999999 6676666 444333222
Q ss_pred -----------HHHHHHHHHHHHhc----CCCeEeecHHHHHHHHHccCCCCCCchHHHHHHHHHHHHHHHHHHHc
Q 003094 749 -----------ADIMLKEVFDRLKT----KDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSMAEKMLA 809 (848)
Q Consensus 749 -----------~~~~l~~~~~~~~~----~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~l~~~l~~~~l~ 809 (848)
+...+.++++++.. .+....|-.+..-...+.+ .......|.++++.-+.+.|.+++..
T Consensus 370 ~~~~~~~~~~~l~~~l~~LN~~I~~~~~~lg~~~~IGhsyf~~~~~~~--~~~~~~~l~~i~~~~I~PlL~EY~~d 443 (459)
T PRK11331 370 NKKAEPSFVESLCQKMNELNQEISKEATILGKGFRIGHSYFCCGLEDG--TSPDTQWLKEIVMTDIAPLLEEYFFD 443 (459)
T ss_pred hcccCchhHHHHHHHHHHHHHHHHhhhhccCCCeEEeeeeeccccccc--cchhHHHHHHHHHhhhhhhHHHHcCC
Confidence 23344555555532 2333333221110000000 00012347777777788888887654
No 287
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.34 E-value=3.8e-12 Score=140.03 Aligned_cols=168 Identities=19% Similarity=0.291 Sum_probs=109.9
Q ss_pred hhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCC-c---eE--------Eec
Q 003094 529 LHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEE-A---MI--------RLD 596 (848)
Q Consensus 529 l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~-~---~i--------~i~ 596 (848)
-+.+|+||+.+++.+.+++...+ -.+.+||+||+|+||+++|..+|+.+++... . +. .-+
T Consensus 17 ~~~~iiGq~~~~~~L~~~~~~~r--------l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~ 88 (365)
T PRK07471 17 ETTALFGHAAAEAALLDAYRSGR--------LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPD 88 (365)
T ss_pred chhhccChHHHHHHHHHHHHcCC--------CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCC
Confidence 35679999999999998887532 1234999999999999999999999976431 1 00 001
Q ss_pred ccc---cc-cccchhcccCCCCCC--------cccccccchhHHHH----cCCCeEEEEcCCCcCChHHHHHHHhhhcCc
Q 003094 597 MSE---FM-ERHTVSKLIGSPPGY--------VGYTEGGQLTEAVR----RRPYTVVLFDEIEKAHPDVFNMMLQILEDG 660 (848)
Q Consensus 597 ~~~---~~-~~~~~~~l~g~~~g~--------~g~~~~~~l~~~~~----~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g 660 (848)
|.. +. ..|.....+...... .+.++.+.+.+.+. .+.+.|++|||+|.+++..+|.|++.+|+-
T Consensus 89 c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEep 168 (365)
T PRK07471 89 HPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEP 168 (365)
T ss_pred ChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcC
Confidence 111 10 001111111110000 01111122222222 245679999999999999999999999982
Q ss_pred EEEcCCCceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCC
Q 003094 661 RLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQL 740 (848)
Q Consensus 661 ~~~~~~g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l 740 (848)
..+++||++|+.... +.|.+++|| ..+.|+|+
T Consensus 169 -----------p~~~~~IL~t~~~~~------------------------------------llpti~SRc-~~i~l~~l 200 (365)
T PRK07471 169 -----------PARSLFLLVSHAPAR------------------------------------LLPTIRSRC-RKLRLRPL 200 (365)
T ss_pred -----------CCCeEEEEEECCchh------------------------------------chHHhhccc-eEEECCCC
Confidence 257788888863332 347889999 89999999
Q ss_pred CHHHHHHHHHHH
Q 003094 741 TKLEVKEIADIM 752 (848)
Q Consensus 741 ~~~el~~I~~~~ 752 (848)
+.+++.+++...
T Consensus 201 ~~~~i~~~L~~~ 212 (365)
T PRK07471 201 APEDVIDALAAA 212 (365)
T ss_pred CHHHHHHHHHHh
Confidence 999999888654
No 288
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=8e-12 Score=136.04 Aligned_cols=183 Identities=21% Similarity=0.250 Sum_probs=113.1
Q ss_pred hccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCC-CC------ceEEe-------
Q 003094 530 HKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGS-EE------AMIRL------- 595 (848)
Q Consensus 530 ~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~-~~------~~i~i------- 595 (848)
+.+|+||+.++..+.- ...|.+ ++||+||||||||++|+.+...+--- .. .+..+
T Consensus 178 ~~DV~GQ~~AKrAlei----AAAGgH-------nLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~g~~~~~ 246 (490)
T COG0606 178 FKDVKGQEQAKRALEI----AAAGGH-------NLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLAGDLHEG 246 (490)
T ss_pred hhhhcCcHHHHHHHHH----HHhcCC-------cEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhccccccc
Confidence 5689999999765543 444433 49999999999999999988765100 00 00001
Q ss_pred ----ccccccccc-ch--hcccCCCCCCcccccccchhHHHHcCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEc--CC
Q 003094 596 ----DMSEFMERH-TV--SKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTD--SK 666 (848)
Q Consensus 596 ----~~~~~~~~~-~~--~~l~g~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~--~~ 666 (848)
...-|...| +. ..|+|. + +....+.+..+++|||||||+-.....+++.|.+-||+|++.. ..
T Consensus 247 ~~~~~~rPFr~PHHsaS~~aLvGG---G-----~~p~PGeIsLAH~GVLFLDElpef~~~iLe~LR~PLE~g~i~IsRa~ 318 (490)
T COG0606 247 CPLKIHRPFRAPHHSASLAALVGG---G-----GVPRPGEISLAHNGVLFLDELPEFKRSILEALREPLENGKIIISRAG 318 (490)
T ss_pred CccceeCCccCCCccchHHHHhCC---C-----CCCCCCceeeecCCEEEeeccchhhHHHHHHHhCccccCcEEEEEcC
Confidence 111111111 11 123332 1 1223344566889999999999999999999999999998764 34
Q ss_pred CceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHH
Q 003094 667 GRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLE 744 (848)
Q Consensus 667 g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~e 744 (848)
++...+.++.+|+++|. +.||+.......-.-. ......-...+...|++|||..+..+.++..+
T Consensus 319 ~~v~ypa~Fqlv~AmNp---------cpcG~~~~~~~~C~c~----~~~~~~Y~~klSgp~lDRiDl~vev~~~~~~e 383 (490)
T COG0606 319 SKVTYPARFQLVAAMNP---------CPCGNLGAPLRRCPCS----PRQIKRYLNKLSGPFLDRIDLMVEVPRLSAGE 383 (490)
T ss_pred CeeEEeeeeEEhhhcCC---------CCccCCCCCCCCcCCC----HHHHHHHHHHhhHHHHhhhhheecccCCCHHH
Confidence 55556679999999994 3344432221110000 00111223446788999999999988887443
No 289
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=5.6e-12 Score=129.12 Aligned_cols=145 Identities=26% Similarity=0.360 Sum_probs=100.7
Q ss_pred EEEeecCCcchHHHHHHHHHHHhc----C--CCCceEEecccccccccchhcccCCCCCCcccccccchhHHHHcCCC-e
Q 003094 563 SFIFSGPTGVGKSELAKALAAYYF----G--SEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPY-T 635 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l~----~--~~~~~i~i~~~~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~-~ 635 (848)
-+|++||||||||+|.+++|+.+. + ....++.+|+..+.. +.|+.....+.. .-..+.+.+..... -
T Consensus 179 liLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFS-----KWFsESgKlV~k-mF~kI~ELv~d~~~lV 252 (423)
T KOG0744|consen 179 LILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFS-----KWFSESGKLVAK-MFQKIQELVEDRGNLV 252 (423)
T ss_pred EEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHH-----HHHhhhhhHHHH-HHHHHHHHHhCCCcEE
Confidence 489999999999999999999972 1 134566666655432 222211111100 00223344443222 3
Q ss_pred EEEEcCCCcCC---------------hHHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCchhhhccCcccccccC
Q 003094 636 VVLFDEIEKAH---------------PDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLD 700 (848)
Q Consensus 636 Vl~lDEid~l~---------------~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~ 700 (848)
.++|||++.+. ..+.|+||+.||.-+ .++|+++.+|||...
T Consensus 253 fvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK---------~~~NvliL~TSNl~~--------------- 308 (423)
T KOG0744|consen 253 FVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLK---------RYPNVLILATSNLTD--------------- 308 (423)
T ss_pred EEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhc---------cCCCEEEEeccchHH---------------
Confidence 57889999872 149999999998744 347899999998443
Q ss_pred CCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHHHHHHHHHH
Q 003094 701 YDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFD 758 (848)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~~~l~~~~~ 758 (848)
.++-+|++|-|.+.+..|++.+.+.+|++.+++++..
T Consensus 309 ---------------------siD~AfVDRADi~~yVG~Pt~~ai~~IlkscieEL~~ 345 (423)
T KOG0744|consen 309 ---------------------SIDVAFVDRADIVFYVGPPTAEAIYEILKSCIEELIS 345 (423)
T ss_pred ---------------------HHHHHhhhHhhheeecCCccHHHHHHHHHHHHHHHHh
Confidence 3568899999999999999999999999999988754
No 290
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.34 E-value=6.1e-12 Score=126.82 Aligned_cols=231 Identities=18% Similarity=0.224 Sum_probs=161.2
Q ss_pred HhhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHh---cCCCCceEEeccccccccc
Q 003094 528 TLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYY---FGSEEAMIRLDMSEFMERH 604 (848)
Q Consensus 528 ~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l---~~~~~~~i~i~~~~~~~~~ 604 (848)
.|...+.....+.....+.+++.....+ .++||.||+|.||+.+|+.|.+.- ..-..+|+.+||..+.++.
T Consensus 181 ~lksgiatrnp~fnrmieqierva~rsr------~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~ 254 (531)
T COG4650 181 FLKSGIATRNPHFNRMIEQIERVAIRSR------APILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDT 254 (531)
T ss_pred HHHhcccccChHHHHHHHHHHHHHhhcc------CCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCch
Confidence 3445566666666666666665543322 349999999999999999987653 2236789999999999999
Q ss_pred chhcccCCCCCC-cccccccchhHHHHcCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCC
Q 003094 605 TVSKLIGSPPGY-VGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNV 683 (848)
Q Consensus 605 ~~~~l~g~~~g~-~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~ 683 (848)
..+.|+|+..|. .|.. ..-.+.++.+.++.+|+|||..+..+-|.+|++.+|+.++.+.+...-..++..+|+.|-
T Consensus 255 amsalfghvkgaftga~--~~r~gllrsadggmlfldeigelgadeqamllkaieekrf~pfgsdr~v~sdfqliagtv- 331 (531)
T COG4650 255 AMSALFGHVKGAFTGAR--ESREGLLRSADGGMLFLDEIGELGADEQAMLLKAIEEKRFYPFGSDRQVSSDFQLIAGTV- 331 (531)
T ss_pred HHHHHHhhhccccccch--hhhhhhhccCCCceEehHhhhhcCccHHHHHHHHHHhhccCCCCCccccccchHHhhhhH-
Confidence 999999986553 3332 223466788999999999999999999999999999988776655444445555655542
Q ss_pred CchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCC----CHHHHHHHHHHHHHHHHHH
Q 003094 684 GSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQL----TKLEVKEIADIMLKEVFDR 759 (848)
Q Consensus 684 ~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l----~~~el~~I~~~~l~~~~~~ 759 (848)
.++-..--...|+.+|+.|+ +...|.-+ ..+|+.--++..|.+..
T Consensus 332 ----------------------------rdlrq~vaeg~fredl~ari-nlwtf~lpgl~qr~ediepnldyelerha-- 380 (531)
T COG4650 332 ----------------------------RDLRQLVAEGKFREDLYARI-NLWTFTLPGLRQRQEDIEPNLDYELERHA-- 380 (531)
T ss_pred ----------------------------HHHHHHHhccchHHHHHHhh-heeeeeccccccCccccCCCccHHHHHHH--
Confidence 11111112345889999999 66666544 34666655666665543
Q ss_pred HhcCCCeEeecHHHHHHHHHcc----CCCCCCchHHHHHHHHHH
Q 003094 760 LKTKDIELQVTERFRERVVEEG----YNPSYGARPLRRAIMRLL 799 (848)
Q Consensus 760 ~~~~~~~l~i~~~a~~~l~~~~----~~~~~g~r~L~~~i~~~l 799 (848)
...|..+.+.-++........ ..|.+|.|+|...+.++.
T Consensus 381 -~~~g~~vrfntearra~l~fa~spqa~w~gnfrelsasvtrma 423 (531)
T COG4650 381 -SLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMA 423 (531)
T ss_pred -HhhCceeeeehHHHHHHHHhccCcchhhcccHHHHhHHHHHHH
Confidence 445778888888877666542 357888899987776553
No 291
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.34 E-value=1.4e-11 Score=142.26 Aligned_cols=210 Identities=15% Similarity=0.183 Sum_probs=137.3
Q ss_pred hhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcC-------CCCceEEecccccc
Q 003094 529 LHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFG-------SEEAMIRLDMSEFM 601 (848)
Q Consensus 529 l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~-------~~~~~i~i~~~~~~ 601 (848)
+-+.++|.+.-++.|...+.....+ ..|...++++|+||||||.+++.+.+.+-. ....++.+||..+.
T Consensus 753 VPD~LPhREeEIeeLasfL~paIkg----sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Ls 828 (1164)
T PTZ00112 753 VPKYLPCREKEIKEVHGFLESGIKQ----SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVV 828 (1164)
T ss_pred CCCcCCChHHHHHHHHHHHHHHHhc----CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccC
Confidence 3557899999999999999876543 122233569999999999999999877621 12457899997765
Q ss_pred cccchh-----cccCCCCCCcccccc---cchhHHHHc--CCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceee
Q 003094 602 ERHTVS-----KLIGSPPGYVGYTEG---GQLTEAVRR--RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVD 671 (848)
Q Consensus 602 ~~~~~~-----~l~g~~~g~~g~~~~---~~l~~~~~~--~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~ 671 (848)
....+. .|.+..+ ..|.... ..++..+.. ....||+|||||.+....++.|+.+++.....
T Consensus 829 tp~sIYqvI~qqL~g~~P-~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s-------- 899 (1164)
T PTZ00112 829 HPNAAYQVLYKQLFNKKP-PNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKI-------- 899 (1164)
T ss_pred CHHHHHHHHHHHHcCCCC-CccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhcc--------
Confidence 544332 2334433 1222111 122332211 22459999999999877788888888752211
Q ss_pred cCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCe-EEEcCCCCHHHHHHHHH
Q 003094 672 FKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDE-MIVFRQLTKLEVKEIAD 750 (848)
Q Consensus 672 ~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~-~i~f~~l~~~el~~I~~ 750 (848)
...++||+.+|.-. +...+.|.+.+||.. .+.|+||+.+++.+|+.
T Consensus 900 ~SKLiLIGISNdlD---------------------------------LperLdPRLRSRLg~eeIvF~PYTaEQL~dILk 946 (1164)
T PTZ00112 900 NSKLVLIAISNTMD---------------------------------LPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIK 946 (1164)
T ss_pred CCeEEEEEecCchh---------------------------------cchhhhhhhhhccccccccCCCCCHHHHHHHHH
Confidence 13568888887211 112245677888843 48999999999999998
Q ss_pred HHHHHHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHH
Q 003094 751 IMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIM 796 (848)
Q Consensus 751 ~~l~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~ 796 (848)
..+... .-.+++++++++++...... +++|++|.
T Consensus 947 ~RAe~A---------~gVLdDdAIELIArkVAq~S---GDARKALD 980 (1164)
T PTZ00112 947 ERLENC---------KEIIDHTAIQLCARKVANVS---GDIRKALQ 980 (1164)
T ss_pred HHHHhC---------CCCCCHHHHHHHHHhhhhcC---CHHHHHHH
Confidence 877652 12489999999998533333 44555554
No 292
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=1.2e-11 Score=146.16 Aligned_cols=206 Identities=20% Similarity=0.308 Sum_probs=145.7
Q ss_pred hccccChHHHHHHHHHHHHHHH--------ccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccc
Q 003094 530 HKRVIGQDEAVKAISRAIRRAR--------VGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFM 601 (848)
Q Consensus 530 ~~~vigq~~~~~~l~~~~~~~~--------~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~ 601 (848)
++.|.|.+.++..+.+.+.... +++.+|+ .+||+||||||||.+|+++|..+-. +..=+.+.+..-.
T Consensus 264 fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPr----gvL~~GppGTGkTl~araLa~~~s~-~~~kisffmrkga 338 (1080)
T KOG0732|consen 264 FDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPR----GVLFHGPPGTGKTLMARALAAACSR-GNRKISFFMRKGA 338 (1080)
T ss_pred ccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCc----ceeecCCCCCchhHHHHhhhhhhcc-cccccchhhhcCc
Confidence 5677888888888887774432 2344443 4999999999999999999988632 2222222222211
Q ss_pred cccchhcccCCCCCCcccccc--cchhHHHHcCCCeEEEEcCCCcCCh-----------HHHHHHHhhhcCcEEEcCCCc
Q 003094 602 ERHTVSKLIGSPPGYVGYTEG--GQLTEAVRRRPYTVVLFDEIEKAHP-----------DVFNMMLQILEDGRLTDSKGR 668 (848)
Q Consensus 602 ~~~~~~~l~g~~~g~~g~~~~--~~l~~~~~~~~~~Vl~lDEid~l~~-----------~~~~~Ll~~le~g~~~~~~g~ 668 (848)
+ .+ ..|+|..+. ..+++.+++..++|+||||||-++| ++...||.+|+.-.
T Consensus 339 D------~l---skwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGld------- 402 (1080)
T KOG0732|consen 339 D------CL---SKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLD------- 402 (1080)
T ss_pred h------hh---ccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCC-------
Confidence 0 11 238888776 5688899999999999999996644 68899999998622
Q ss_pred eeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhh--hccCeEEEcCCCCHHHHH
Q 003094 669 TVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFL--NRLDEMIVFRQLTKLEVK 746 (848)
Q Consensus 669 ~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll--~R~d~~i~f~~l~~~el~ 746 (848)
....+++|.+||.... ++|+|+ +|||..++|+.++.++..
T Consensus 403 --sRgqVvvigATnRpda------------------------------------~dpaLRRPgrfdref~f~lp~~~ar~ 444 (1080)
T KOG0732|consen 403 --SRGQVVVIGATNRPDA------------------------------------IDPALRRPGRFDREFYFPLPDVDARA 444 (1080)
T ss_pred --CCCceEEEcccCCccc------------------------------------cchhhcCCcccceeEeeeCCchHHHH
Confidence 1246789999986553 568884 899999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHHHHHHHHHHH
Q 003094 747 EIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSMAE 805 (848)
Q Consensus 747 ~I~~~~l~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~l~~~l~~ 805 (848)
+|+...-.. -.-.+....+.+|+. -...|+..+|+..+..+...++-+
T Consensus 445 ~Il~Ihtrk---------w~~~i~~~l~~~la~--~t~gy~gaDlkaLCTeAal~~~~r 492 (1080)
T KOG0732|consen 445 KILDIHTRK---------WEPPISRELLLWLAE--ETSGYGGADLKALCTEAALIALRR 492 (1080)
T ss_pred HHHHHhccC---------CCCCCCHHHHHHHHH--hccccchHHHHHHHHHHhhhhhcc
Confidence 998544322 123477788899988 556677777887777666655443
No 293
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=1.1e-11 Score=140.83 Aligned_cols=164 Identities=24% Similarity=0.369 Sum_probs=121.2
Q ss_pred hhccccChHHHHHHHHHHHHHHH-------ccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccc
Q 003094 529 LHKRVIGQDEAVKAISRAIRRAR-------VGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFM 601 (848)
Q Consensus 529 l~~~vigq~~~~~~l~~~~~~~~-------~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~ 601 (848)
.+.++.|.+++++.+.+.+.-.+ .|.+- |. .+||+||||||||.+|+++|... +.||..+..++|.
T Consensus 148 ~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGaki---Pk-GvlLvGpPGTGKTLLAkAvAgEA---~VPFf~iSGS~FV 220 (596)
T COG0465 148 TFADVAGVDEAKEELSELVDFLKNPKKYQALGAKI---PK-GVLLVGPPGTGKTLLAKAVAGEA---GVPFFSISGSDFV 220 (596)
T ss_pred ChhhhcCcHHHHHHHHHHHHHHhCchhhHhccccc---cc-ceeEecCCCCCcHHHHHHHhccc---CCCceeccchhhh
Confidence 35567788888887777765432 23222 33 38999999999999999999875 8999999888886
Q ss_pred cccchhcccCCCCCCcccccccchhHHHHcCCCeEEEEcCCCcCCh--------------HHHHHHHhhhcCcEEEcCCC
Q 003094 602 ERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHP--------------DVFNMMLQILEDGRLTDSKG 667 (848)
Q Consensus 602 ~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~--------------~~~~~Ll~~le~g~~~~~~g 667 (848)
+. ++|. |....+.++...++..+||+||||||.... ..+|.||..||...-
T Consensus 221 em-----fVGv-----GAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~----- 285 (596)
T COG0465 221 EM-----FVGV-----GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGG----- 285 (596)
T ss_pred hh-----hcCC-----CcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCC-----
Confidence 54 3332 333346788888887889999999998743 388999999986330
Q ss_pred ceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhh--hccCeEEEcCCCCHHHH
Q 003094 668 RTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFL--NRLDEMIVFRQLTKLEV 745 (848)
Q Consensus 668 ~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll--~R~d~~i~f~~l~~~el 745 (848)
-..+++|.+||... .++|+|+ .|||..|..+.++-...
T Consensus 286 ----~~gviviaaTNRpd------------------------------------VlD~ALlRpgRFDRqI~V~~PDi~gR 325 (596)
T COG0465 286 ----NEGVIVIAATNRPD------------------------------------VLDPALLRPGRFDRQILVELPDIKGR 325 (596)
T ss_pred ----CCceEEEecCCCcc------------------------------------cchHhhcCCCCcceeeecCCcchhhH
Confidence 13567888888543 2557777 79999999999999998
Q ss_pred HHHHHHHHH
Q 003094 746 KEIADIMLK 754 (848)
Q Consensus 746 ~~I~~~~l~ 754 (848)
++|++..+.
T Consensus 326 e~IlkvH~~ 334 (596)
T COG0465 326 EQILKVHAK 334 (596)
T ss_pred HHHHHHHhh
Confidence 999875543
No 294
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.33 E-value=3.4e-11 Score=130.35 Aligned_cols=171 Identities=20% Similarity=0.266 Sum_probs=110.6
Q ss_pred hhhhhhhcC-CCCCccCChHHHHHHHHHhccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEE-------
Q 003094 186 NLTKLAEEG-KLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVI------- 257 (848)
Q Consensus 186 ~l~~~~~~~-~ld~iiG~~~~~~~l~~~l~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~------- 257 (848)
|+.+..++. .|..++|+++.+..|...+..+...++||.||+|||||++++.+++.+....+. .+.++.
T Consensus 5 ~~~~~~~~~~pf~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~---~~~pf~~~p~~p~ 81 (350)
T CHL00081 5 NLKKKERPVFPFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVV---KDDPFNSHPSDPE 81 (350)
T ss_pred chhhccCCCCCHHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCcc---CCCCCCCCCCChh
Confidence 455554443 588999999999999988888888999999999999999999999988653321 111110
Q ss_pred ---------------------EEeCCccccc---ccccc--hHHHHHHHH-----HHHHHhCCCeEEEEcccchhhhCCC
Q 003094 258 ---------------------TLDMGLLVAG---TKYRG--EFEERLKKL-----MEEIKQSDEIILFIDEVHTLIGAGA 306 (848)
Q Consensus 258 ---------------------~~~~~~l~~~---~~~~g--~~~~~l~~l-----~~~~~~~~~~IL~IDEid~l~~~~~ 306 (848)
.+.+..+..+ ....| +.+..+..- ...+.+....+||+||++.+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~---- 157 (350)
T CHL00081 82 LMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLD---- 157 (350)
T ss_pred hhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCC----
Confidence 0000000000 00011 011111000 001112345699999999994
Q ss_pred CCchHHHHHHHhhhhcC---------------CceEEEEeeChHHHHhhhhcChhhhcccC-CCcCCCCC-HHHHHHHHH
Q 003094 307 AEGAIDAANILKPSLAR---------------GELQCIGATTLDEYRKHIEKDPALERRFQ-PVKVPEPS-VDETIQILK 369 (848)
Q Consensus 307 ~~~~~~~~~~L~~~l~~---------------~~v~vI~atn~~~~~~~~~~d~al~~Rf~-~i~~~~p~-~~e~~~Il~ 369 (848)
...+..|...++. ..+++|++.|+.+. .+.+++..||. .+.+..|+ .+++.+|++
T Consensus 158 ----~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg----~l~~~LldRf~l~i~l~~~~~~~~e~~il~ 229 (350)
T CHL00081 158 ----DHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEG----ELRPQLLDRFGMHAEIRTVKDPELRVKIVE 229 (350)
T ss_pred ----HHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccC----CCCHHHHHHhCceeecCCCCChHHHHHHHH
Confidence 3467777777643 23677888887653 58999999997 78999887 589999998
Q ss_pred HH
Q 003094 370 GL 371 (848)
Q Consensus 370 ~~ 371 (848)
..
T Consensus 230 ~~ 231 (350)
T CHL00081 230 QR 231 (350)
T ss_pred hh
Confidence 74
No 295
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.33 E-value=8.8e-12 Score=128.09 Aligned_cols=187 Identities=17% Similarity=0.292 Sum_probs=112.4
Q ss_pred CCCCCcc-CChH--HHHHHHHHhccCCC--CCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccccc
Q 003094 194 GKLDPVV-GRQP--QIERVVQILGRRTK--NNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGT 268 (848)
Q Consensus 194 ~~ld~ii-G~~~--~~~~l~~~l~~~~~--~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~ 268 (848)
-+||+++ |..+ ....+..+...+.. +.++|+||+|+|||+|.+++++++.... .+.++++++...+...
T Consensus 5 ~tFdnfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~-----~~~~v~y~~~~~f~~~- 78 (219)
T PF00308_consen 5 YTFDNFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQH-----PGKRVVYLSAEEFIRE- 78 (219)
T ss_dssp -SCCCS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHC-----TTS-EEEEEHHHHHHH-
T ss_pred CccccCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhcc-----ccccceeecHHHHHHH-
Confidence 3677764 5433 23333333333222 3468999999999999999999875311 2567888887665421
Q ss_pred cccchHH-HHHHHHHHHHHhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCCceEEEEeeChHHHHhhhhcChhh
Q 003094 269 KYRGEFE-ERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATTLDEYRKHIEKDPAL 347 (848)
Q Consensus 269 ~~~g~~~-~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~atn~~~~~~~~~~d~al 347 (848)
+..... ..+..+.+..+..+ +|+|||+|.+.+. ......+..++....++++.+|+.+...+.. ...+++.+
T Consensus 79 -~~~~~~~~~~~~~~~~~~~~D--lL~iDDi~~l~~~--~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~--l~~~~~~L 151 (219)
T PF00308_consen 79 -FADALRDGEIEEFKDRLRSAD--LLIIDDIQFLAGK--QRTQEELFHLFNRLIESGKQLILTSDRPPSE--LSGLLPDL 151 (219)
T ss_dssp -HHHHHHTTSHHHHHHHHCTSS--EEEEETGGGGTTH--HHHHHHHHHHHHHHHHTTSEEEEEESS-TTT--TTTS-HHH
T ss_pred -HHHHHHcccchhhhhhhhcCC--EEEEecchhhcCc--hHHHHHHHHHHHHHHhhCCeEEEEeCCCCcc--ccccChhh
Confidence 111100 11233445555444 9999999998532 1112345556666666777666655444442 22468999
Q ss_pred hcccC---CCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhc
Q 003094 348 ERRFQ---PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQ 397 (848)
Q Consensus 348 ~~Rf~---~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~ 397 (848)
.+||. .+.+.+|+.+++.+|++..+. ..++.++++++..++....+
T Consensus 152 ~SRl~~Gl~~~l~~pd~~~r~~il~~~a~----~~~~~l~~~v~~~l~~~~~~ 200 (219)
T PF00308_consen 152 RSRLSWGLVVELQPPDDEDRRRILQKKAK----ERGIELPEEVIEYLARRFRR 200 (219)
T ss_dssp HHHHHCSEEEEE----HHHHHHHHHHHHH----HTT--S-HHHHHHHHHHTTS
T ss_pred hhhHhhcchhhcCCCCHHHHHHHHHHHHH----HhCCCCcHHHHHHHHHhhcC
Confidence 99994 789999999999999998887 46888999999998886544
No 296
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.33 E-value=4.9e-12 Score=138.21 Aligned_cols=165 Identities=20% Similarity=0.254 Sum_probs=108.5
Q ss_pred hccccC-hHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCC----CceE-Eecccccccc
Q 003094 530 HKRVIG-QDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSE----EAMI-RLDMSEFMER 603 (848)
Q Consensus 530 ~~~vig-q~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~----~~~i-~i~~~~~~~~ 603 (848)
+..|+| |+.+++.+.+.+... +..+.+||+||+|+||+++|+.+|+.+++.+ .++- +-+|..+...
T Consensus 4 ~~~i~~~q~~~~~~L~~~~~~~--------~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~ 75 (329)
T PRK08058 4 WEQLTALQPVVVKMLQNSIAKN--------RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSG 75 (329)
T ss_pred HHHHHhhHHHHHHHHHHHHHcC--------CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcC
Confidence 456777 999999888887643 2224579999999999999999999987643 1111 1112222111
Q ss_pred cchh-cccCCCCCCcccccccchhHHHH----cCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecCCeEEE
Q 003094 604 HTVS-KLIGSPPGYVGYTEGGQLTEAVR----RRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLI 678 (848)
Q Consensus 604 ~~~~-~l~g~~~g~~g~~~~~~l~~~~~----~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI 678 (848)
.... .++.......+.+..+.+.+.+. .+.+.|++|||+|.++.+.+|.|++.||+ ++.+++||
T Consensus 76 ~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEE-----------Pp~~~~~I 144 (329)
T PRK08058 76 NHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEE-----------PSGGTTAI 144 (329)
T ss_pred CCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcC-----------CCCCceEE
Confidence 1111 11111000111111122233332 24567999999999999999999999998 34688999
Q ss_pred EecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHH
Q 003094 679 MTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIAD 750 (848)
Q Consensus 679 ~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~ 750 (848)
++|+... .+.|.+++|| .++.|.+++.+++.+++.
T Consensus 145 l~t~~~~------------------------------------~ll~TIrSRc-~~i~~~~~~~~~~~~~L~ 179 (329)
T PRK08058 145 LLTENKH------------------------------------QILPTILSRC-QVVEFRPLPPESLIQRLQ 179 (329)
T ss_pred EEeCChH------------------------------------hCcHHHHhhc-eeeeCCCCCHHHHHHHHH
Confidence 9886322 2558899999 999999999999877774
No 297
>PRK06893 DNA replication initiation factor; Validated
Probab=99.33 E-value=2e-11 Score=126.67 Aligned_cols=163 Identities=16% Similarity=0.217 Sum_probs=105.9
Q ss_pred EEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhcccCCCCCCcccccccchhHHHHcCCCeEEEEcCC
Q 003094 563 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEI 642 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEi 642 (848)
.++|+||||||||++++++++.+...+.....+++...... ...+.+.++ ...+|+|||+
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~~------------------~~~~~~~~~--~~dlLilDDi 100 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQYF------------------SPAVLENLE--QQDLVCLDDL 100 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhhh------------------hHHHHhhcc--cCCEEEEeCh
Confidence 47999999999999999999987544444444444321000 001112222 3359999999
Q ss_pred CcCC--hHHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHH
Q 003094 643 EKAH--PDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELK 720 (848)
Q Consensus 643 d~l~--~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 720 (848)
+.+. +..+..|+.+++... .....++|+|+|.....+
T Consensus 101 ~~~~~~~~~~~~l~~l~n~~~---------~~~~~illits~~~p~~l-------------------------------- 139 (229)
T PRK06893 101 QAVIGNEEWELAIFDLFNRIK---------EQGKTLLLISADCSPHAL-------------------------------- 139 (229)
T ss_pred hhhcCChHHHHHHHHHHHHHH---------HcCCcEEEEeCCCChHHc--------------------------------
Confidence 9875 444556666665421 002345677887544321
Q ss_pred hhcChhhhhccC--eEEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHHHH
Q 003094 721 QYFRPEFLNRLD--EMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRL 798 (848)
Q Consensus 721 ~~~~~~ll~R~d--~~i~f~~l~~~el~~I~~~~l~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~ 798 (848)
....|+|.+|+. .++.+++++.+++.+|+...... ..+.++++++++|+.+. ....|.|..+++++
T Consensus 140 ~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~---------~~l~l~~~v~~~L~~~~---~~d~r~l~~~l~~l 207 (229)
T PRK06893 140 SIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQ---------RGIELSDEVANFLLKRL---DRDMHTLFDALDLL 207 (229)
T ss_pred cccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHH---------cCCCCCHHHHHHHHHhc---cCCHHHHHHHHHHH
Confidence 113478899883 47899999999999999776653 23679999999999942 13457777777754
No 298
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.33 E-value=5.5e-11 Score=124.11 Aligned_cols=215 Identities=21% Similarity=0.303 Sum_probs=144.2
Q ss_pred CCCccCChH---HHHHHHHHhc---cCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccc---
Q 003094 196 LDPVVGRQP---QIERVVQILG---RRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVA--- 266 (848)
Q Consensus 196 ld~iiG~~~---~~~~l~~~l~---~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~--- 266 (848)
-+..||... .++++.+.+. +...+|+||+|++|.|||++++.+++.......++ ....+|+.+.+-.-.+
T Consensus 33 ~~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~-~~~~PVv~vq~P~~p~~~~ 111 (302)
T PF05621_consen 33 ADRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDED-AERIPVVYVQMPPEPDERR 111 (302)
T ss_pred cCCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCC-CccccEEEEecCCCCChHH
Confidence 345667653 3344444444 34568899999999999999999998765433222 2345788877522111
Q ss_pred -----------cccccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCCceEEEEeeChH
Q 003094 267 -----------GTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATTLD 335 (848)
Q Consensus 267 -----------~~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~atn~~ 335 (848)
..+...............++..+.-+|+|||+|.+. .|......++.+.|+.+.+.-++.+|+.++..
T Consensus 112 ~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lL-aGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~ 190 (302)
T PF05621_consen 112 FYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLL-AGSYRKQREFLNALKFLGNELQIPIVGVGTRE 190 (302)
T ss_pred HHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHh-cccHHHHHHHHHHHHHHhhccCCCeEEeccHH
Confidence 111222222333333445555677799999999986 34455577899999999888889999998887
Q ss_pred HHHhhhhcChhhhcccCCCcCCCCCHH-HHHHHHHHHHHHHhhhhcCCCCh-HHHHHHHhhhhcccccCCChhhHHHHHH
Q 003094 336 EYRKHIEKDPALERRFQPVKVPEPSVD-ETIQILKGLRERYEIHHKLRYTD-EALVSAAQLSYQYISDRFLPDKAIDLID 413 (848)
Q Consensus 336 ~~~~~~~~d~al~~Rf~~i~~~~p~~~-e~~~Il~~~~~~~~~~~~~~~s~-~~l~~l~~~s~~~~~~~~~p~~a~~ll~ 413 (848)
.+ ..+..|+.+.+||..+.+|.+..+ +-..++..+-..+.......+.+ +....+...+.|.+++ ...++.
T Consensus 191 A~-~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~------l~~ll~ 263 (302)
T PF05621_consen 191 AY-RALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGE------LSRLLN 263 (302)
T ss_pred HH-HHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHH------HHHHHH
Confidence 65 467789999999999999998766 44445555555544444445554 4557888999888776 667776
Q ss_pred HHhhHH
Q 003094 414 EAGSRV 419 (848)
Q Consensus 414 ~a~~~~ 419 (848)
.|+..+
T Consensus 264 ~aA~~A 269 (302)
T PF05621_consen 264 AAAIAA 269 (302)
T ss_pred HHHHHH
Confidence 665443
No 299
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.32 E-value=3.4e-11 Score=125.40 Aligned_cols=159 Identities=19% Similarity=0.230 Sum_probs=103.7
Q ss_pred EEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhcccCCCCCCcccccccchhHHHHcCCCeEEEEcCC
Q 003094 563 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEI 642 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEi 642 (848)
+++|+||+|||||++++++++.+...+.....+++..... + ...+.+.+.+ ..+|+|||+
T Consensus 47 ~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~-------------~-----~~~~~~~~~~--~dlliiDdi 106 (235)
T PRK08084 47 YIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAW-------------F-----VPEVLEGMEQ--LSLVCIDNI 106 (235)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhh-------------h-----hHHHHHHhhh--CCEEEEeCh
Confidence 5899999999999999999988754444444444433210 0 0112222322 248999999
Q ss_pred CcCCh--HH----HHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHH
Q 003094 643 EKAHP--DV----FNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVT 716 (848)
Q Consensus 643 d~l~~--~~----~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 716 (848)
+.+.. .. ++.+...+++| +..+|+||+.....+
T Consensus 107 ~~~~~~~~~~~~lf~l~n~~~e~g-------------~~~li~ts~~~p~~l---------------------------- 145 (235)
T PRK08084 107 ECIAGDELWEMAIFDLYNRILESG-------------RTRLLITGDRPPRQL---------------------------- 145 (235)
T ss_pred hhhcCCHHHHHHHHHHHHHHHHcC-------------CCeEEEeCCCChHHc----------------------------
Confidence 98853 33 44445555543 234777776444311
Q ss_pred HHHHhhcChhhhhccC--eEEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHH
Q 003094 717 EELKQYFRPEFLNRLD--EMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRA 794 (848)
Q Consensus 717 ~~l~~~~~~~ll~R~d--~~i~f~~l~~~el~~I~~~~l~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~ 794 (848)
..+.|+|.+|+. .++.+.|++.+++.+++...... .+ +.++++++++|+...- .+.|.+...
T Consensus 146 ----~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~-------~~--~~l~~~v~~~L~~~~~---~d~r~l~~~ 209 (235)
T PRK08084 146 ----NLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARL-------RG--FELPEDVGRFLLKRLD---REMRTLFMT 209 (235)
T ss_pred ----CcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHH-------cC--CCCCHHHHHHHHHhhc---CCHHHHHHH
Confidence 124589999995 58999999999999998654432 13 6699999999998522 345777777
Q ss_pred HHHH
Q 003094 795 IMRL 798 (848)
Q Consensus 795 i~~~ 798 (848)
++++
T Consensus 210 l~~l 213 (235)
T PRK08084 210 LDQL 213 (235)
T ss_pred HHHH
Confidence 7764
No 300
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.32 E-value=6e-11 Score=120.01 Aligned_cols=167 Identities=23% Similarity=0.319 Sum_probs=123.2
Q ss_pred cCCCCCccCChHHHHHHHH----HhccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccccc
Q 003094 193 EGKLDPVVGRQPQIERVVQ----ILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGT 268 (848)
Q Consensus 193 ~~~ld~iiG~~~~~~~l~~----~l~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~ 268 (848)
+..+++++|.+.+++.|.+ ++...+.+|+||+|++|||||++++++..+.... |.++++++-..+.
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~-------GLRlIev~k~~L~--- 92 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQ-------GLRLIEVSKEDLG--- 92 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhc-------CceEEEECHHHhc---
Confidence 4568889999998887655 5667889999999999999999999999998653 6788888765554
Q ss_pred cccchHHHHHHHHHHHHHh-CCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhc------CCceEEEEeeChHHHHhhh
Q 003094 269 KYRGEFEERLKKLMEEIKQ-SDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLA------RGELQCIGATTLDEYRKHI 341 (848)
Q Consensus 269 ~~~g~~~~~l~~l~~~~~~-~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~------~~~v~vI~atn~~~~~~~~ 341 (848)
.+..+++.++. ..+.|||+||+- +.. .......|+.+|+ ..++.+.+|+|+....+-.
T Consensus 93 --------~l~~l~~~l~~~~~kFIlf~DDLs--Fe~-----~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~E~ 157 (249)
T PF05673_consen 93 --------DLPELLDLLRDRPYKFILFCDDLS--FEE-----GDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVPES 157 (249)
T ss_pred --------cHHHHHHHHhcCCCCEEEEecCCC--CCC-----CcHHHHHHHHHhcCccccCCCcEEEEEecchhhccchh
Confidence 25566666653 457899999864 222 2234567777776 4578999999975543211
Q ss_pred h----------c--------ChhhhcccC-CCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHH
Q 003094 342 E----------K--------DPALERRFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEAL 388 (848)
Q Consensus 342 ~----------~--------d~al~~Rf~-~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l 388 (848)
. + .-+|..||. .|.|.+|+.++-.+|++.++++ .++.++++.+
T Consensus 158 ~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~----~g~~~~~e~l 219 (249)
T PF05673_consen 158 FSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAER----YGLELDEEEL 219 (249)
T ss_pred hhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHH
Confidence 1 1 135666997 8999999999999999999875 4777775444
No 301
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.32 E-value=2.2e-11 Score=141.35 Aligned_cols=221 Identities=11% Similarity=0.043 Sum_probs=137.5
Q ss_pred hhhhhhhhcCCCCCccCChHHHHHHHHHhccCCC----CC-cEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEE
Q 003094 185 TNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTK----NN-PCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITL 259 (848)
Q Consensus 185 ~~l~~~~~~~~ld~iiG~~~~~~~l~~~l~~~~~----~~-iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~ 259 (848)
.+|.++++|..+++++|+++.++.|..++..... .. ++|+||||||||++++.+|+.+...... -.........
T Consensus 72 ~pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~E-w~npv~~~~~ 150 (637)
T TIGR00602 72 EPWVEKYKPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELGIQVQE-WSNPTLPDFQ 150 (637)
T ss_pred CchHHHhCCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHH-Hhhhhhhccc
Confidence 3699999999999999999999999888765332 22 7899999999999999999987431100 0000000000
Q ss_pred e-----CCcccccccccchHHHHHHHHHHHHH----------hCCCeEEEEcccchhhhCCCCCchHHHHHHHh-hhhcC
Q 003094 260 D-----MGLLVAGTKYRGEFEERLKKLMEEIK----------QSDEIILFIDEVHTLIGAGAAEGAIDAANILK-PSLAR 323 (848)
Q Consensus 260 ~-----~~~l~~~~~~~g~~~~~l~~l~~~~~----------~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~-~~l~~ 323 (848)
. ...+.............+..++..+. .....||||||++.++.. ......++|+ ...+.
T Consensus 151 ~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r----~~~~lq~lLr~~~~e~ 226 (637)
T TIGR00602 151 KNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR----DTRALHEILRWKYVSI 226 (637)
T ss_pred ccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh----hHHHHHHHHHHHhhcC
Confidence 0 00000000000111233444444443 134679999999887632 1234566666 56677
Q ss_pred CceEEEEeeChHHH------Hhhhh----cChhhhc--ccCCCcCCCCCHHHHHHHHHHHHHHHhhh--hcCCC-ChHHH
Q 003094 324 GELQCIGATTLDEY------RKHIE----KDPALER--RFQPVKVPEPSVDETIQILKGLRERYEIH--HKLRY-TDEAL 388 (848)
Q Consensus 324 ~~v~vI~atn~~~~------~~~~~----~d~al~~--Rf~~i~~~~p~~~e~~~Il~~~~~~~~~~--~~~~~-s~~~l 388 (848)
+.+.+|+++|.... ...+. +.+++++ |...|.|++.+..+..+.|+.++...... ....+ +++++
T Consensus 227 ~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~~~~l 306 (637)
T TIGR00602 227 GRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTSV 306 (637)
T ss_pred CCceEEEEecCCccccccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhhhhccccccccCCHHHH
Confidence 78888888774322 11122 4578887 55689999999999988888888753211 12223 46788
Q ss_pred HHHHhhhhcccccCCChhhHHHHHHHHh
Q 003094 389 VSAAQLSYQYISDRFLPDKAIDLIDEAG 416 (848)
Q Consensus 389 ~~l~~~s~~~~~~~~~p~~a~~ll~~a~ 416 (848)
..++..+.|.+. .|+..|+.++
T Consensus 307 ~~I~~~s~GDiR------sAIn~LQf~~ 328 (637)
T TIGR00602 307 ELLCQGCSGDIR------SAINSLQFSS 328 (637)
T ss_pred HHHHHhCCChHH------HHHHHHHHHH
Confidence 888887766644 4888887765
No 302
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=1e-11 Score=135.36 Aligned_cols=209 Identities=18% Similarity=0.232 Sum_probs=145.1
Q ss_pred HHHhhccccChHHHHHHHHHHHHHHH------ccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccc
Q 003094 526 EETLHKRVIGQDEAVKAISRAIRRAR------VGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSE 599 (848)
Q Consensus 526 ~~~l~~~vigq~~~~~~l~~~~~~~~------~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~ 599 (848)
++..++.+.|.+.+.+.+...+.... .+++. |...+||.||||+|||+++++||... +..|..+..+.
T Consensus 148 ~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~---p~rglLLfGPpgtGKtmL~~aiAsE~---~atff~iSass 221 (428)
T KOG0740|consen 148 RNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLRE---PVRGLLLFGPPGTGKTMLAKAIATES---GATFFNISASS 221 (428)
T ss_pred CcccccCCcchhhHHHHhhhhhhhcccchHhhhcccc---ccchhheecCCCCchHHHHHHHHhhh---cceEeeccHHH
Confidence 34456778888888777777664432 23333 34469999999999999999999887 66777666666
Q ss_pred cccccchhcccCCCCCCcccccc--cchhHHHHcCCCeEEEEcCCCcC-----------ChHHHHHHHhhhcCcEEEcCC
Q 003094 600 FMERHTVSKLIGSPPGYVGYTEG--GQLTEAVRRRPYTVVLFDEIEKA-----------HPDVFNMMLQILEDGRLTDSK 666 (848)
Q Consensus 600 ~~~~~~~~~l~g~~~g~~g~~~~--~~l~~~~~~~~~~Vl~lDEid~l-----------~~~~~~~Ll~~le~g~~~~~~ 666 (848)
+... |+|..++ ..++..++...++|+|+||||++ ++.....++-.++.....
T Consensus 222 LtsK------------~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~--- 286 (428)
T KOG0740|consen 222 LTSK------------YVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSA--- 286 (428)
T ss_pred hhhh------------ccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCC---
Confidence 5433 8887755 56788888899999999999976 222333333222222111
Q ss_pred CceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHH
Q 003094 667 GRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVK 746 (848)
Q Consensus 667 g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~ 746 (848)
.-.++++|.|||.+.. ++.+++.||...++++.++.+...
T Consensus 287 ----~~drvlvigaTN~P~e------------------------------------~Dea~~Rrf~kr~yiplPd~etr~ 326 (428)
T KOG0740|consen 287 ----PDDRVLVIGATNRPWE------------------------------------LDEAARRRFVKRLYIPLPDYETRS 326 (428)
T ss_pred ----CCCeEEEEecCCCchH------------------------------------HHHHHHHHhhceeeecCCCHHHHH
Confidence 1137889999985443 346677788788899999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHHHHHHHHHHHH
Q 003094 747 EIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSMAEK 806 (848)
Q Consensus 747 ~I~~~~l~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~l~~~l~~~ 806 (848)
.++...|.+. + -.+.+.-+..|++ ....|+..++...+......++...
T Consensus 327 ~~~~~ll~~~-------~--~~l~~~d~~~l~~--~Tegysgsdi~~l~kea~~~p~r~~ 375 (428)
T KOG0740|consen 327 LLWKQLLKEQ-------P--NGLSDLDISLLAK--VTEGYSGSDITALCKEAAMGPLREL 375 (428)
T ss_pred HHHHHHHHhC-------C--CCccHHHHHHHHH--HhcCcccccHHHHHHHhhcCchhhc
Confidence 9998888762 1 1245566677777 4555777888888887777776654
No 303
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.31 E-value=1.4e-11 Score=144.24 Aligned_cols=208 Identities=17% Similarity=0.168 Sum_probs=131.2
Q ss_pred ceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhcccCCCCCCccccccc--chhHHHHcCCCeEEE
Q 003094 561 IASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGG--QLTEAVRRRPYTVVL 638 (848)
Q Consensus 561 ~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~~g~~~~~--~l~~~~~~~~~~Vl~ 638 (848)
++++||.|+||||||++|++||+.+.+ ..+|+.+++.. +...|+|...-+.....+. .-.+.+.+++++|||
T Consensus 16 ~g~vLl~G~~GtgKs~lar~l~~~~~~-~~pfv~i~~~~-----t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~ 89 (589)
T TIGR02031 16 LGGVAIRARAGTGKTALARALAEILPP-IMPFVELPLGV-----TEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLY 89 (589)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhCCc-CCCeEecCccc-----chhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEe
Confidence 678999999999999999999998632 34788887532 2334555421010000000 011234457789999
Q ss_pred EcCCCcCChHHHHHHHhhhcCcEEEcC--CCceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHH
Q 003094 639 FDEIEKAHPDVFNMMLQILEDGRLTDS--KGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVT 716 (848)
Q Consensus 639 lDEid~l~~~~~~~Ll~~le~g~~~~~--~g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 716 (848)
+|||+.+++.+|+.|+++|++|.++.. +.......++++|+|+|....
T Consensus 90 lDEi~rl~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~------------------------------ 139 (589)
T TIGR02031 90 VDMANLLDDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEG------------------------------ 139 (589)
T ss_pred ccchhhCCHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccc------------------------------
Confidence 999999999999999999999985432 222333457899999883310
Q ss_pred HHHHhhcChhhhhccCeEEEcCCC-CHHHHHHHHHHHHHHH--------------HHHHhcCCCeEeecHHHHHHHHHcc
Q 003094 717 EELKQYFRPEFLNRLDEMIVFRQL-TKLEVKEIADIMLKEV--------------FDRLKTKDIELQVTERFRERVVEEG 781 (848)
Q Consensus 717 ~~l~~~~~~~ll~R~d~~i~f~~l-~~~el~~I~~~~l~~~--------------~~~~~~~~~~l~i~~~a~~~l~~~~ 781 (848)
...|+++|++||+..|....+ ..++..+|+...+..+ ....+..-..+.++++++++|++.+
T Consensus 140 ---~g~L~~~LldRf~l~v~~~~~~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~ 216 (589)
T TIGR02031 140 ---GGGLPDHLLDRLALHVSLEDVASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTA 216 (589)
T ss_pred ---cCCCCHHHHHhccCeeecCCCCCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHH
Confidence 124789999999887666654 4455677776655322 1112223446779999999999864
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHcc
Q 003094 782 YNPSYGARPLRRAIMRLLEDSMAEKMLAR 810 (848)
Q Consensus 782 ~~~~~g~r~L~~~i~~~l~~~l~~~~l~~ 810 (848)
.. .|...+|..+. ++.-+-+.+.+.+
T Consensus 217 ~~--~gv~s~Ra~i~-~~r~ArA~Aal~g 242 (589)
T TIGR02031 217 AS--LGISGHRADLF-AVRAAKAHAALHG 242 (589)
T ss_pred HH--cCCCCccHHHH-HHHHHHHHHHHhC
Confidence 32 33333433332 4555555554443
No 304
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.30 E-value=4.6e-12 Score=115.05 Aligned_cols=106 Identities=30% Similarity=0.458 Sum_probs=65.3
Q ss_pred EEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhcccCCCCCCcccc-----cccchhHHHHcCCCeEE
Q 003094 563 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYT-----EGGQLTEAVRRRPYTVV 637 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~~g~~-----~~~~l~~~~~~~~~~Vl 637 (848)
|+||+|+||+|||++|+++|+.+ +..|.++.+.. +-..++++|.+- |.... ..+.++ ..|+
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~---~~~f~RIq~tp---dllPsDi~G~~v-~~~~~~~f~~~~GPif-------~~il 66 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSL---GLSFKRIQFTP---DLLPSDILGFPV-YDQETGEFEFRPGPIF-------TNIL 66 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHT---T--EEEEE--T---T--HHHHHEEEE-EETTTTEEEEEE-TT--------SSEE
T ss_pred CEeeECCCccHHHHHHHHHHHHc---CCceeEEEecC---CCCcccceeeee-eccCCCeeEeecChhh-------hcee
Confidence 58999999999999999999998 67788887642 223455555421 10000 001222 2599
Q ss_pred EEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecCC-eEEEEecCC
Q 003094 638 LFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKN-TLLIMTSNV 683 (848)
Q Consensus 638 ~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~-~iiI~tsN~ 683 (848)
++|||+.++|.+|++||++|++++++. +|..+..++ ..+|+|-|.
T Consensus 67 l~DEiNrappktQsAlLeam~Er~Vt~-~g~~~~lp~pf~ViATqNp 112 (131)
T PF07726_consen 67 LADEINRAPPKTQSALLEAMEERQVTI-DGQTYPLPDPFFVIATQNP 112 (131)
T ss_dssp EEETGGGS-HHHHHHHHHHHHHSEEEE-TTEEEE--SS-EEEEEE-T
T ss_pred eecccccCCHHHHHHHHHHHHcCeEEe-CCEEEECCCcEEEEEecCc
Confidence 999999999999999999999999884 455666665 666777774
No 305
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.30 E-value=3.4e-11 Score=141.04 Aligned_cols=135 Identities=17% Similarity=0.195 Sum_probs=90.6
Q ss_pred hHHHHcCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCc----------eeecCCeEEEEecCCCchhhhccCccc
Q 003094 626 TEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGR----------TVDFKNTLLIMTSNVGSSVIEKGGRRI 695 (848)
Q Consensus 626 ~~~~~~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~----------~v~~~~~iiI~tsN~~~~~i~~~~~~~ 695 (848)
.+.+.++.+++|||||++.+++..|..|+++|+++++...++. .....++++|+++|..
T Consensus 210 ~G~L~~AngGtL~Ldei~~L~~~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~----------- 278 (608)
T TIGR00764 210 AGAIHRAHKGVLYIDEIKTMPLEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLD----------- 278 (608)
T ss_pred CCceEECCCCEEEEEChHhCCHHHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHH-----------
Confidence 3456678899999999999999999999999999988764431 1123478899998721
Q ss_pred ccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccC---eEEEcCC---CCHHHHHHHHHHHHHHHHHHHhcCCCeEee
Q 003094 696 GFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLD---EMIVFRQ---LTKLEVKEIADIMLKEVFDRLKTKDIELQV 769 (848)
Q Consensus 696 ~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d---~~i~f~~---l~~~el~~I~~~~l~~~~~~~~~~~~~l~i 769 (848)
....++|+|++||+ ..+.|++ .+.+...+++..+..+ +...|....+
T Consensus 279 -----------------------~l~~l~~~l~~rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~----~~r~G~l~~~ 331 (608)
T TIGR00764 279 -----------------------DLEGMHPALRSRIRGYGYEVYMKDTMPDTPENRDKLVQFVAQE----VKKDGRIPHF 331 (608)
T ss_pred -----------------------HHhhcCHHHHHHhcCCeEEEEeeccCCCCHHHHHHHHHHHHHH----HHHhCCCCcC
Confidence 11237899999998 5566654 3555655554433322 2333333478
Q ss_pred cHHHHHHHHHccC-------CCCCCchHHHHHHHHH
Q 003094 770 TERFRERVVEEGY-------NPSYGARPLRRAIMRL 798 (848)
Q Consensus 770 ~~~a~~~l~~~~~-------~~~~g~r~L~~~i~~~ 798 (848)
+++++..|.++.. .++...|+|.+.++..
T Consensus 332 s~~Av~~Li~~~~R~ag~r~~lsl~~R~L~~llR~A 367 (608)
T TIGR00764 332 TRDAVEEIVREAQRRAGRKDHLTLRLRELGGLVRAA 367 (608)
T ss_pred CHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHH
Confidence 9999999986411 2334456776666654
No 306
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.30 E-value=3.3e-11 Score=121.38 Aligned_cols=156 Identities=21% Similarity=0.263 Sum_probs=101.4
Q ss_pred eEEEeecCCcchHHHHHHHHHHHhcCCC----Cce-EEecccccccccc-hhcccCCCCCCcccccccchhHHHHc----
Q 003094 562 ASFIFSGPTGVGKSELAKALAAYYFGSE----EAM-IRLDMSEFMERHT-VSKLIGSPPGYVGYTEGGQLTEAVRR---- 631 (848)
Q Consensus 562 ~~lLl~Gp~GtGKT~lA~~la~~l~~~~----~~~-i~i~~~~~~~~~~-~~~l~g~~~g~~g~~~~~~l~~~~~~---- 631 (848)
+.+||+||+|+|||++|+.+++.+.+.. .++ ...+|..+..... ....+....+..+.+....+.+.+..
T Consensus 15 ~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~~~~~~ 94 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQVRELVEFLSRTPQE 94 (188)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHHHHHHHHHccCccc
Confidence 4599999999999999999999986531 111 1111221111100 00111111111111122222333333
Q ss_pred CCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHH
Q 003094 632 RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRI 711 (848)
Q Consensus 632 ~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~ 711 (848)
+++.||||||+|.++++.++.|+..||+. ..+++||+++|...
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~-----------~~~~~~il~~~~~~-------------------------- 137 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEP-----------PPNTLFILITPSPE-------------------------- 137 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCC-----------CCCeEEEEEECChH--------------------------
Confidence 44679999999999999999999999872 25778888876221
Q ss_pred HHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCeEeecHHHHHHHHHc
Q 003094 712 KSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEE 780 (848)
Q Consensus 712 ~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~~~l~~~~~~~~~~~~~l~i~~~a~~~l~~~ 780 (848)
.+.+++.+|+ .++.|.|++.+++.+++... | +++++++.|+..
T Consensus 138 ----------~l~~~i~sr~-~~~~~~~~~~~~~~~~l~~~-----------g----i~~~~~~~i~~~ 180 (188)
T TIGR00678 138 ----------KLLPTIRSRC-QVLPFPPLSEEALLQWLIRQ-----------G----ISEEAAELLLAL 180 (188)
T ss_pred ----------hChHHHHhhc-EEeeCCCCCHHHHHHHHHHc-----------C----CCHHHHHHHHHH
Confidence 2458899999 89999999999998887543 2 678888888874
No 307
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.30 E-value=9.3e-11 Score=121.91 Aligned_cols=184 Identities=18% Similarity=0.201 Sum_probs=116.8
Q ss_pred hcCCCCCcc-CC-hHHHHHHHHHhc-cCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccccc
Q 003094 192 EEGKLDPVV-GR-QPQIERVVQILG-RRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGT 268 (848)
Q Consensus 192 ~~~~ld~ii-G~-~~~~~~l~~~l~-~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~ 268 (848)
++.+||+++ |. +..+..+.++.. .....+++|+||+|||||++++++++..... +..++++++..+...
T Consensus 13 ~~~~~d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~-------~~~~~~i~~~~~~~~- 84 (227)
T PRK08903 13 PPPTFDNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYG-------GRNARYLDAASPLLA- 84 (227)
T ss_pred ChhhhcccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhC-------CCcEEEEehHHhHHH-
Confidence 345688876 33 344455555444 2455789999999999999999999987542 456777876554310
Q ss_pred cccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCCceEEEEeeChHHHHhhhhcChhhh
Q 003094 269 KYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATTLDEYRKHIEKDPALE 348 (848)
Q Consensus 269 ~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~atn~~~~~~~~~~d~al~ 348 (848)
+... ....+|+|||+|.+.+. ....+...+...-+.+..++|.+++..+. ...+.+.+.
T Consensus 85 -------------~~~~--~~~~~liiDdi~~l~~~----~~~~L~~~~~~~~~~~~~~vl~~~~~~~~--~~~l~~~L~ 143 (227)
T PRK08903 85 -------------FDFD--PEAELYAVDDVERLDDA----QQIALFNLFNRVRAHGQGALLVAGPAAPL--ALPLREDLR 143 (227)
T ss_pred -------------Hhhc--ccCCEEEEeChhhcCch----HHHHHHHHHHHHHHcCCcEEEEeCCCCHH--hCCCCHHHH
Confidence 1111 22448999999987321 11223333333334555445555544331 123568888
Q ss_pred ccc---CCCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCChhhHHHHHHH
Q 003094 349 RRF---QPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDE 414 (848)
Q Consensus 349 ~Rf---~~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~p~~a~~ll~~ 414 (848)
+|| ..+.+++|+.++...++..+.. ..++.++++++..+++.+.+. +..+.++++.
T Consensus 144 sr~~~~~~i~l~pl~~~~~~~~l~~~~~----~~~v~l~~~al~~L~~~~~gn------~~~l~~~l~~ 202 (227)
T PRK08903 144 TRLGWGLVYELKPLSDADKIAALKAAAA----ERGLQLADEVPDYLLTHFRRD------MPSLMALLDA 202 (227)
T ss_pred HHHhcCeEEEecCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHhccCC------HHHHHHHHHH
Confidence 898 3789999999988888876654 457889999999998855443 3345555544
No 308
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.29 E-value=5.8e-11 Score=129.47 Aligned_cols=174 Identities=16% Similarity=0.201 Sum_probs=122.8
Q ss_pred CCCCccCChHHHHHHHHHhccCCCCCc-EEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccccccccch
Q 003094 195 KLDPVVGRQPQIERVVQILGRRTKNNP-CLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGE 273 (848)
Q Consensus 195 ~ld~iiG~~~~~~~l~~~l~~~~~~~i-LL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~~~~g~ 273 (848)
.|++++|++..++.+...+..+..+|. ||+||+|+|||++|+.+++.+.+...... ...+..+... .+.. .
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~--h~D~~~~~~~---~~~~-i-- 73 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQRE--YVDIIEFKPI---NKKS-I-- 73 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCC--CCCeEEeccc---cCCC-C--
Confidence 478999999999999999988777777 79999999999999999999865432111 2233333321 1111 1
Q ss_pred HHHHHHHHHHHHH----hCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcC--CceEEEEeeChHHHHhhhhcChhh
Q 003094 274 FEERLKKLMEEIK----QSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR--GELQCIGATTLDEYRKHIEKDPAL 347 (848)
Q Consensus 274 ~~~~l~~l~~~~~----~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~atn~~~~~~~~~~d~al 347 (848)
....++.+.+.+. .++..|++||++|.+. ....|.|+..++. .++.+|.+|+.++ .+.|.+
T Consensus 74 ~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~--------~~a~naLLK~LEepp~~t~~il~~~~~~-----~ll~TI 140 (313)
T PRK05564 74 GVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMT--------EQAQNAFLKTIEEPPKGVFIILLCENLE-----QILDTI 140 (313)
T ss_pred CHHHHHHHHHHHhcCcccCCceEEEEechhhcC--------HHHHHHHHHHhcCCCCCeEEEEEeCChH-----hCcHHH
Confidence 1233555555443 2456799999999984 4478999999984 3466666666555 688999
Q ss_pred hcccCCCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhc
Q 003094 348 ERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQ 397 (848)
Q Consensus 348 ~~Rf~~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~ 397 (848)
.+|++.+.|++|+.++....+..... .++++.+..++.++.+
T Consensus 141 ~SRc~~~~~~~~~~~~~~~~l~~~~~--------~~~~~~~~~l~~~~~g 182 (313)
T PRK05564 141 KSRCQIYKLNRLSKEEIEKFISYKYN--------DIKEEEKKSAIAFSDG 182 (313)
T ss_pred HhhceeeeCCCcCHHHHHHHHHHHhc--------CCCHHHHHHHHHHcCC
Confidence 99999999999999988776654321 3566667667666554
No 309
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=99.29 E-value=2.8e-11 Score=141.04 Aligned_cols=119 Identities=13% Similarity=0.205 Sum_probs=82.8
Q ss_pred HHHHcCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCc----------eeecCCeEEEEecCCCchhhhccCcccc
Q 003094 627 EAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGR----------TVDFKNTLLIMTSNVGSSVIEKGGRRIG 696 (848)
Q Consensus 627 ~~~~~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~----------~v~~~~~iiI~tsN~~~~~i~~~~~~~~ 696 (848)
+.+.++.+++|||||++.+++..|..|+++|+++++...++. ....-++++|+++|...
T Consensus 220 G~L~kAnGGtL~LDei~~L~~~~q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~~l----------- 288 (637)
T PRK13765 220 GAIHKAHKGVLFIDEINTLDLESQQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNLDA----------- 288 (637)
T ss_pred CceeECCCcEEEEeChHhCCHHHHHHHHHHHHhCCEEecccccccccccCCCcceeeeeEEEEecCcCH-----------
Confidence 455678899999999999999999999999999987653321 11224789999997311
Q ss_pred cccCCCcccccHHHHHHHHHHHHHhhcChhhhhccC---eEEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCeEeecHHH
Q 003094 697 FDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLD---EMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTERF 773 (848)
Q Consensus 697 f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d---~~i~f~~l~~~el~~I~~~~l~~~~~~~~~~~~~l~i~~~a 773 (848)
...++|+|++||. ..+.|.+-.+ +..+....++..+.+++...|....+++++
T Consensus 289 -----------------------l~~~dpdL~~rfk~~~v~v~f~~~~~-d~~e~~~~~~~~iaqe~~~~G~l~~f~~eA 344 (637)
T PRK13765 289 -----------------------LENMHPALRSRIKGYGYEVYMRDTME-DTPENRRKLVRFVAQEVKRDGKIPHFDRDA 344 (637)
T ss_pred -----------------------HHhhhHHHHHHhccCeEEEEcccccC-CCHHHHHHHHHHHHHHhhhccCCCCCCHHH
Confidence 1224788999985 4466665433 334455555655555555544445789999
Q ss_pred HHHHHHc
Q 003094 774 RERVVEE 780 (848)
Q Consensus 774 ~~~l~~~ 780 (848)
+..|.++
T Consensus 345 Va~LI~~ 351 (637)
T PRK13765 345 VEEIIRE 351 (637)
T ss_pred HHHHHHH
Confidence 9999875
No 310
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=1.5e-11 Score=132.75 Aligned_cols=152 Identities=23% Similarity=0.371 Sum_probs=106.6
Q ss_pred EEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhcccCCCCCCcccccccchhHHHHc-CCCeEEEEcC
Q 003094 563 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRR-RPYTVVLFDE 641 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~-~~~~Vl~lDE 641 (848)
.+|||||||||||++..+||++| +..+.-+++++...... |...+.. .+.+||+|++
T Consensus 237 GYLLYGPPGTGKSS~IaAmAn~L---~ydIydLeLt~v~~n~d-------------------Lr~LL~~t~~kSIivIED 294 (457)
T KOG0743|consen 237 GYLLYGPPGTGKSSFIAAMANYL---NYDIYDLELTEVKLDSD-------------------LRHLLLATPNKSILLIED 294 (457)
T ss_pred cceeeCCCCCCHHHHHHHHHhhc---CCceEEeeeccccCcHH-------------------HHHHHHhCCCCcEEEEee
Confidence 49999999999999999999999 77888888777654432 3333333 3468999999
Q ss_pred CCcCC------------------hHHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCchhhhccCcccccccCCCc
Q 003094 642 IEKAH------------------PDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDE 703 (848)
Q Consensus 642 id~l~------------------~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~ 703 (848)
||..- +-.+..||..++.=. ...|. .-|||+|||.-
T Consensus 295 IDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlw--Sscg~-----ERIivFTTNh~------------------- 348 (457)
T KOG0743|consen 295 IDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLW--SSCGD-----ERIIVFTTNHK------------------- 348 (457)
T ss_pred cccccccccccccccccccCCcceeehHHhhhhhcccc--ccCCC-----ceEEEEecCCh-------------------
Confidence 99651 125677888888633 22221 23899999932
Q ss_pred ccccHHHHHHHHHHHHHhhcChhhhh--ccCeEEEcCCCCHHHHHHHHHHHHHH-----HHHHHhcCCCeEeecH-HHHH
Q 003094 704 KDSSYNRIKSLVTEELKQYFRPEFLN--RLDEMIVFRQLTKLEVKEIADIMLKE-----VFDRLKTKDIELQVTE-RFRE 775 (848)
Q Consensus 704 ~~~~~~~~~~~~~~~l~~~~~~~ll~--R~d~~i~f~~l~~~el~~I~~~~l~~-----~~~~~~~~~~~l~i~~-~a~~ 775 (848)
+.++|+|+. |+|..|.+..=+.+.++.++..+|.- +...+...-....++| ++.+
T Consensus 349 -----------------EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~~h~L~~eie~l~~~~~~tPA~V~e 411 (457)
T KOG0743|consen 349 -----------------EKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEEDHRLFDEIERLIEETEVTPAQVAE 411 (457)
T ss_pred -----------------hhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCCCcchhHHHHHHhhcCccCHHHHHH
Confidence 248899996 99999999999999999999887743 2333322222334565 4445
Q ss_pred HHHH
Q 003094 776 RVVE 779 (848)
Q Consensus 776 ~l~~ 779 (848)
.|+.
T Consensus 412 ~lm~ 415 (457)
T KOG0743|consen 412 ELMK 415 (457)
T ss_pred HHhh
Confidence 5555
No 311
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.29 E-value=5.1e-11 Score=133.25 Aligned_cols=199 Identities=18% Similarity=0.263 Sum_probs=122.7
Q ss_pred hhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCC------CCceEEeccccccc
Q 003094 529 LHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGS------EEAMIRLDMSEFME 602 (848)
Q Consensus 529 l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~------~~~~i~i~~~~~~~ 602 (848)
..+.++|.+..++.|...+.....+. .+ .+++++||||||||++++.+.+.+... ...++.+||.....
T Consensus 13 ~p~~l~gRe~e~~~l~~~l~~~~~~~----~~-~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~ 87 (365)
T TIGR02928 13 VPDRIVHRDEQIEELAKALRPILRGS----RP-SNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDT 87 (365)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHcCC----CC-CcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCC
Confidence 34578999999999999988654331 11 358999999999999999999876321 14678889876543
Q ss_pred ccch-----hccc--CCCCCCcccccc---cchhHHHH-cCCCeEEEEcCCCcCC---hHHHHHHHhhhcCcEEEcCCCc
Q 003094 603 RHTV-----SKLI--GSPPGYVGYTEG---GQLTEAVR-RRPYTVVLFDEIEKAH---PDVFNMMLQILEDGRLTDSKGR 668 (848)
Q Consensus 603 ~~~~-----~~l~--g~~~g~~g~~~~---~~l~~~~~-~~~~~Vl~lDEid~l~---~~~~~~Ll~~le~g~~~~~~g~ 668 (848)
.... ..+. |......+.+.. ..+.+.+. .....||+|||+|.+. .+++..|+++.+...
T Consensus 88 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~------- 160 (365)
T TIGR02928 88 LYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGD------- 160 (365)
T ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccC-------
Confidence 2111 1222 222111222111 22333343 2446789999999994 334444444422211
Q ss_pred eeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccC-eEEEcCCCCHHHHHH
Q 003094 669 TVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLD-EMIVFRQLTKLEVKE 747 (848)
Q Consensus 669 ~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d-~~i~f~~l~~~el~~ 747 (848)
....++.+|+++|.... ...+.+.+.+||. ..+.|+||+.+++.+
T Consensus 161 -~~~~~v~lI~i~n~~~~---------------------------------~~~l~~~~~s~~~~~~i~f~p~~~~e~~~ 206 (365)
T TIGR02928 161 -LDNAKVGVIGISNDLKF---------------------------------RENLDPRVKSSLCEEEIIFPPYDAEELRD 206 (365)
T ss_pred -CCCCeEEEEEEECCcch---------------------------------HhhcCHHHhccCCcceeeeCCCCHHHHHH
Confidence 11246778888873221 1234566777774 579999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCeEeecHHHHHHHHHc
Q 003094 748 IADIMLKEVFDRLKTKDIELQVTERFRERVVEE 780 (848)
Q Consensus 748 I~~~~l~~~~~~~~~~~~~l~i~~~a~~~l~~~ 780 (848)
|+...++.. + ..-.+++++++++...
T Consensus 207 il~~r~~~~---~----~~~~~~~~~l~~i~~~ 232 (365)
T TIGR02928 207 ILENRAEKA---F----YDGVLDDGVIPLCAAL 232 (365)
T ss_pred HHHHHHHhh---c----cCCCCChhHHHHHHHH
Confidence 998777521 1 1123788888877664
No 312
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=99.28 E-value=1.8e-11 Score=131.65 Aligned_cols=163 Identities=15% Similarity=0.246 Sum_probs=111.2
Q ss_pred ccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCC----CceEEe-cccccccc-cch
Q 003094 533 VIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSE----EAMIRL-DMSEFMER-HTV 606 (848)
Q Consensus 533 vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~----~~~i~i-~~~~~~~~-~~~ 606 (848)
+.|+....+.+.+.+...+. .+.+||+||+|+||+++|+.+|+.+.+.+ .++-.+ .|..+... |..
T Consensus 4 yPW~~~~~~~l~~~~~~~rl--------~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD 75 (325)
T PRK06871 4 YPWLQPTYQQITQAFQQGLG--------HHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPD 75 (325)
T ss_pred CcchHHHHHHHHHHHHcCCc--------ceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCC
Confidence 57888888888888875421 24589999999999999999999997643 222111 12222111 111
Q ss_pred hcccCCCCC-CcccccccchhHHHHc----CCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecCCeEEEEec
Q 003094 607 SKLIGSPPG-YVGYTEGGQLTEAVRR----RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTS 681 (848)
Q Consensus 607 ~~l~g~~~g-~~g~~~~~~l~~~~~~----~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~ts 681 (848)
...+....+ ..+.+..+.+.+.+.. +++.|++||++|+++...+|.||+.||+ ++.+++||++|
T Consensus 76 ~~~i~p~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEE-----------Pp~~~~fiL~t 144 (325)
T PRK06871 76 FHILEPIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEE-----------PRPNTYFLLQA 144 (325)
T ss_pred EEEEccccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcC-----------CCCCeEEEEEE
Confidence 111211011 1232222333333332 4567999999999999999999999998 45789999998
Q ss_pred CCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHHH
Q 003094 682 NVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADI 751 (848)
Q Consensus 682 N~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~~ 751 (848)
+.... +.|.+++|| ..+.|.|++.+++.+.+..
T Consensus 145 ~~~~~------------------------------------llpTI~SRC-~~~~~~~~~~~~~~~~L~~ 177 (325)
T PRK06871 145 DLSAA------------------------------------LLPTIYSRC-QTWLIHPPEEQQALDWLQA 177 (325)
T ss_pred CChHh------------------------------------CchHHHhhc-eEEeCCCCCHHHHHHHHHH
Confidence 64332 558999999 9999999999998877754
No 313
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=99.28 E-value=5e-12 Score=120.45 Aligned_cols=137 Identities=23% Similarity=0.373 Sum_probs=98.4
Q ss_pred cChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhcccCCC
Q 003094 534 IGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSP 613 (848)
Q Consensus 534 igq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~ 613 (848)
+|.+.+++.+.+.+...... ..+++++|++||||+.+|+.|+........+|+.++|....
T Consensus 1 vG~S~~~~~l~~~l~~~a~~-------~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~------------ 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKS-------SSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP------------ 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCS-------SS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC------------
T ss_pred CCCCHHHHHHHHHHHHHhCC-------CCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc------------
Confidence 57888999999999877532 12499999999999999999999876667788888887642
Q ss_pred CCCcccccccchhHHHHcCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCchhhhccCc
Q 003094 614 PGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGR 693 (848)
Q Consensus 614 ~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~i~~~~~ 693 (848)
.+.+..+.+++|||+|+|.++++.|..|+++++... ..++++|+++..+.....
T Consensus 62 ------------~~~l~~a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~----------~~~~RlI~ss~~~l~~l~---- 115 (138)
T PF14532_consen 62 ------------AELLEQAKGGTLYLKNIDRLSPEAQRRLLDLLKRQE----------RSNVRLIASSSQDLEELV---- 115 (138)
T ss_dssp ------------HHHHHHCTTSEEEEECGCCS-HHHHHHHHHHHHHCT----------TTTSEEEEEECC-CCCHH----
T ss_pred ------------HHHHHHcCCCEEEECChHHCCHHHHHHHHHHHHhcC----------CCCeEEEEEeCCCHHHHh----
Confidence 234445688899999999999999999999998632 257789999874432110
Q ss_pred ccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCe-EEEcCCC
Q 003094 694 RIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDE-MIVFRQL 740 (848)
Q Consensus 694 ~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~-~i~f~~l 740 (848)
-...|.++|+.|++. .|.+|||
T Consensus 116 -------------------------~~~~~~~~L~~~l~~~~i~lPpL 138 (138)
T PF14532_consen 116 -------------------------EEGRFSPDLYYRLSQLEIHLPPL 138 (138)
T ss_dssp -------------------------HHSTHHHHHHHHCSTCEEEE---
T ss_pred -------------------------hccchhHHHHHHhCCCEEeCCCC
Confidence 123477999999975 4777775
No 314
>PRK08727 hypothetical protein; Validated
Probab=99.26 E-value=1.5e-10 Score=120.39 Aligned_cols=164 Identities=20% Similarity=0.183 Sum_probs=106.4
Q ss_pred eEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhcccCCCCCCcccccccchhHHHHcCCCeEEEEcC
Q 003094 562 ASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDE 641 (848)
Q Consensus 562 ~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDE 641 (848)
.+++|+||+|||||+++++++..+...+...+.+++.++... + ....+.+.+ ..+|+|||
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~~------------~------~~~~~~l~~--~dlLiIDD 101 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAGR------------L------RDALEALEG--RSLVALDG 101 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhhh------------H------HHHHHHHhc--CCEEEEeC
Confidence 359999999999999999999887655555555554433210 0 011222332 34999999
Q ss_pred CCcCC--hHHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHH
Q 003094 642 IEKAH--PDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEEL 719 (848)
Q Consensus 642 id~l~--~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l 719 (848)
++.+. +..+..|+.++....- ....+|+|+|.....+
T Consensus 102 i~~l~~~~~~~~~lf~l~n~~~~----------~~~~vI~ts~~~p~~l------------------------------- 140 (233)
T PRK08727 102 LESIAGQREDEVALFDFHNRARA----------AGITLLYTARQMPDGL------------------------------- 140 (233)
T ss_pred cccccCChHHHHHHHHHHHHHHH----------cCCeEEEECCCChhhh-------------------------------
Confidence 99885 4455666666654210 1234788887443311
Q ss_pred HhhcChhhhhcc--CeEEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHHH
Q 003094 720 KQYFRPEFLNRL--DEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMR 797 (848)
Q Consensus 720 ~~~~~~~ll~R~--d~~i~f~~l~~~el~~I~~~~l~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~ 797 (848)
..+.|++.+|+ ..++.|++|+.+++.+|+...... ..+.++++++++|+.+.- ...|.+.+.++.
T Consensus 141 -~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~---------~~l~l~~e~~~~La~~~~---rd~r~~l~~L~~ 207 (233)
T PRK08727 141 -ALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQR---------RGLALDEAAIDWLLTHGE---RELAGLVALLDR 207 (233)
T ss_pred -hhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHH---------cCCCCCHHHHHHHHHhCC---CCHHHHHHHHHH
Confidence 12458999996 368999999999999999875544 236799999999999521 223444444554
Q ss_pred HH
Q 003094 798 LL 799 (848)
Q Consensus 798 ~l 799 (848)
+.
T Consensus 208 l~ 209 (233)
T PRK08727 208 LD 209 (233)
T ss_pred HH
Confidence 33
No 315
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=99.26 E-value=1.2e-10 Score=117.53 Aligned_cols=113 Identities=26% Similarity=0.334 Sum_probs=85.4
Q ss_pred CeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHH
Q 003094 634 YTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKS 713 (848)
Q Consensus 634 ~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~ 713 (848)
++||||||++.++-+++..|.+.+|..- ..++|++||.|--.+.....-. ..
T Consensus 297 PGVLFIDEVhMLDiEcFTyL~kalES~i------------aPivifAsNrG~~~irGt~d~~----------sP------ 348 (456)
T KOG1942|consen 297 PGVLFIDEVHMLDIECFTYLHKALESPI------------APIVIFASNRGMCTIRGTEDIL----------SP------ 348 (456)
T ss_pred CcceEeeehhhhhhHHHHHHHHHhcCCC------------CceEEEecCCcceeecCCcCCC----------CC------
Confidence 5799999999999999999999999743 2389999997765442200000 00
Q ss_pred HHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHH
Q 003094 714 LVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRR 793 (848)
Q Consensus 714 ~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~~~l~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~ 793 (848)
.-++++|++|+ .+|...+|+++++++|+....+. ..+.++++++++|...+. -+.||-
T Consensus 349 -------hGip~dllDRl-~Iirt~~y~~~e~r~Ii~~Ra~~---------E~l~~~e~a~~~l~~~gt-----~tsLRy 406 (456)
T KOG1942|consen 349 -------HGIPPDLLDRL-LIIRTLPYDEEEIRQIIKIRAQV---------EGLQVEEEALDLLAEIGT-----STSLRY 406 (456)
T ss_pred -------CCCCHHHhhhe-eEEeeccCCHHHHHHHHHHHHhh---------hcceecHHHHHHHHhhcc-----chhHHH
Confidence 02689999999 99999999999999999765543 456799999999998532 356766
Q ss_pred HHH
Q 003094 794 AIM 796 (848)
Q Consensus 794 ~i~ 796 (848)
+++
T Consensus 407 ~vq 409 (456)
T KOG1942|consen 407 AVQ 409 (456)
T ss_pred HHH
Confidence 666
No 316
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=99.26 E-value=2.5e-11 Score=130.47 Aligned_cols=164 Identities=18% Similarity=0.178 Sum_probs=109.5
Q ss_pred ccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCC-ceEEeccc-ccc-cccchh
Q 003094 531 KRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEE-AMIRLDMS-EFM-ERHTVS 607 (848)
Q Consensus 531 ~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~-~~i~i~~~-~~~-~~~~~~ 607 (848)
.-+.||..+++.+...+...+ -.+.+||+||+|+||+++|..+|+.+++.+. +.-...|- .+. +.|...
T Consensus 4 ~~yPW~~~~~~~l~~~~~~~r--------l~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~ 75 (319)
T PRK08769 4 AFSPWQQRAYDQTVAALDAGR--------LGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDL 75 (319)
T ss_pred cccccHHHHHHHHHHHHHcCC--------cceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCE
Confidence 346788999998888876432 1235999999999999999999999976541 11111111 111 112222
Q ss_pred cccCCCCCCccc--------ccccchhHHHHc----CCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecCCe
Q 003094 608 KLIGSPPGYVGY--------TEGGQLTEAVRR----RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNT 675 (848)
Q Consensus 608 ~l~g~~~g~~g~--------~~~~~l~~~~~~----~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~ 675 (848)
.++...+...|. +..+.+.+.+.. +.+.|++||++|+++....|.||+.||+ ++.++
T Consensus 76 ~~i~~~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEE-----------Pp~~~ 144 (319)
T PRK08769 76 QLVSFIPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEE-----------PSPGR 144 (319)
T ss_pred EEEecCCCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhC-----------CCCCC
Confidence 222211112221 111223333332 3457999999999999999999999998 44688
Q ss_pred EEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHH
Q 003094 676 LLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIAD 750 (848)
Q Consensus 676 iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~ 750 (848)
+||++|+.... +.|.+++|| ..+.|.+++.+++.+.+.
T Consensus 145 ~fiL~~~~~~~------------------------------------lLpTIrSRC-q~i~~~~~~~~~~~~~L~ 182 (319)
T PRK08769 145 YLWLISAQPAR------------------------------------LPATIRSRC-QRLEFKLPPAHEALAWLL 182 (319)
T ss_pred eEEEEECChhh------------------------------------CchHHHhhh-eEeeCCCcCHHHHHHHHH
Confidence 99999874333 458999999 999999999998887774
No 317
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.26 E-value=1.6e-10 Score=125.29 Aligned_cols=164 Identities=20% Similarity=0.296 Sum_probs=102.0
Q ss_pred CCCccCChHHHHHHHHHhccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCC---------CCCC----CCceEE-----
Q 003094 196 LDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDV---------PDTI----EGKKVI----- 257 (848)
Q Consensus 196 ld~iiG~~~~~~~l~~~l~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~---------~~~l----~~~~v~----- 257 (848)
|..++|+++.+..+.-.+-.+...+++|.|+||+|||+++++++..+..... |..- .+++..
T Consensus 3 f~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 82 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMMCEEVRIRVDSQE 82 (337)
T ss_pred ccccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccccChHHhhhhhccc
Confidence 5679999999999877766677889999999999999999999988742110 0000 000000
Q ss_pred ----------EEeCCcccccccccchH--HHHHHH---HH--HHHHhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhh
Q 003094 258 ----------TLDMGLLVAGTKYRGEF--EERLKK---LM--EEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPS 320 (848)
Q Consensus 258 ----------~~~~~~l~~~~~~~g~~--~~~l~~---l~--~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~ 320 (848)
..++-.-.......|.. +..+.. .+ ..+.+..+.+|||||++.+. ...+..|...
T Consensus 83 ~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~--------~~~Q~~Ll~~ 154 (337)
T TIGR02030 83 PLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLE--------DHLVDVLLDV 154 (337)
T ss_pred ccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCC--------HHHHHHHHHH
Confidence 01110000000111111 111100 00 01112345699999999984 4477777777
Q ss_pred hcCC---------------ceEEEEeeChHHHHhhhhcChhhhcccC-CCcCCCCCH-HHHHHHHHHH
Q 003094 321 LARG---------------ELQCIGATTLDEYRKHIEKDPALERRFQ-PVKVPEPSV-DETIQILKGL 371 (848)
Q Consensus 321 l~~~---------------~v~vI~atn~~~~~~~~~~d~al~~Rf~-~i~~~~p~~-~e~~~Il~~~ 371 (848)
++.+ .+++|+++|+.+. .+.+++..||. .+.++.|+. +++.+|++..
T Consensus 155 l~~g~~~v~r~G~~~~~~~r~iviat~np~eg----~l~~~LldRf~l~i~l~~p~~~eer~eIL~~~ 218 (337)
T TIGR02030 155 AASGWNVVEREGISIRHPARFVLVGSGNPEEG----ELRPQLLDRFGLHAEIRTVRDVELRVEIVERR 218 (337)
T ss_pred HHhCCeEEEECCEEEEcCCCEEEEeccccccC----CCCHHHHhhcceEEECCCCCCHHHHHHHHHhh
Confidence 7543 3677888776642 58999999997 788888875 8888888763
No 318
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.25 E-value=3.5e-11 Score=130.65 Aligned_cols=161 Identities=19% Similarity=0.188 Sum_probs=104.7
Q ss_pred ccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCC----CceEE-ecccccccccchh
Q 003094 533 VIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSE----EAMIR-LDMSEFMERHTVS 607 (848)
Q Consensus 533 vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~----~~~i~-i~~~~~~~~~~~~ 607 (848)
+.||....+.+... ++..+.+||+||+|+||+++|+.+|+.+.+.. .++-. -+|..+.......
T Consensus 5 yPWl~~~~~~~~~~-----------~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD 73 (328)
T PRK05707 5 YPWQQSLWQQLAGR-----------GRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPD 73 (328)
T ss_pred CCCcHHHHHHHHHC-----------CCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCC
Confidence 46676666665432 22234599999999999999999999997642 12211 1122221111111
Q ss_pred -cccCCC--CCCcccccccchhHHHHc----CCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecCCeEEEEe
Q 003094 608 -KLIGSP--PGYVGYTEGGQLTEAVRR----RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMT 680 (848)
Q Consensus 608 -~l~g~~--~g~~g~~~~~~l~~~~~~----~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~t 680 (848)
..+-.. ....+.+..+.+.+.+.. +++.|++||++|+++.+.+|.||+.||+ ++.+++||++
T Consensus 74 ~~~i~~~~~~~~i~id~iR~l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEE-----------Pp~~~~fiL~ 142 (328)
T PRK05707 74 NFVLEPEEADKTIKVDQVRELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEE-----------PSGDTVLLLI 142 (328)
T ss_pred EEEEeccCCCCCCCHHHHHHHHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhC-----------CCCCeEEEEE
Confidence 111110 011222222334444433 4577999999999999999999999998 3368899999
Q ss_pred cCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHHHH
Q 003094 681 SNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIM 752 (848)
Q Consensus 681 sN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~~~ 752 (848)
|+.... +.|.+++|| ..+.|.|++.+++.+.+...
T Consensus 143 t~~~~~------------------------------------ll~TI~SRc-~~~~~~~~~~~~~~~~L~~~ 177 (328)
T PRK05707 143 SHQPSR------------------------------------LLPTIKSRC-QQQACPLPSNEESLQWLQQA 177 (328)
T ss_pred ECChhh------------------------------------CcHHHHhhc-eeeeCCCcCHHHHHHHHHHh
Confidence 874332 568999999 88999999999988777543
No 319
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.25 E-value=2.2e-10 Score=119.26 Aligned_cols=117 Identities=22% Similarity=0.215 Sum_probs=89.5
Q ss_pred CeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCC-ceEEEEeeChH-------HHHhhhhcChhhhcccCCCcCCCCCH
Q 003094 290 EIILFIDEVHTLIGAGAAEGAIDAANILKPSLARG-ELQCIGATTLD-------EYRKHIEKDPALERRFQPVKVPEPSV 361 (848)
Q Consensus 290 ~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~-~v~vI~atn~~-------~~~~~~~~d~al~~Rf~~i~~~~p~~ 361 (848)
|.+|||||+|.| +.+...+|.+.++.. --++|.+||+- ++..-.-++..|+.|+-.|...+++.
T Consensus 292 pGVLFIDEvHmL--------DIE~FsFlnrAlEse~aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLDRllII~t~py~~ 363 (450)
T COG1224 292 PGVLFIDEVHML--------DIECFSFLNRALESELAPIIILATNRGMTKIRGTDIESPHGIPLDLLDRLLIISTRPYSR 363 (450)
T ss_pred cceEEEechhhh--------hHHHHHHHHHHhhcccCcEEEEEcCCceeeecccCCcCCCCCCHhhhhheeEEecCCCCH
Confidence 789999999999 677888999988754 34666677742 12223357789999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCChhhHHHHHHHHhhHHHHhh
Q 003094 362 DETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRH 423 (848)
Q Consensus 362 ~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~p~~a~~ll~~a~~~~~~~~ 423 (848)
++..+|++..++ ..++.++++++++++.+.... .-+-++.||.-|...+..++
T Consensus 364 ~EireIi~iRa~----ee~i~l~~~Ale~L~~ig~et-----SLRYa~qLL~pa~iiA~~rg 416 (450)
T COG1224 364 EEIREIIRIRAK----EEDIELSDDALEYLTDIGEET-----SLRYAVQLLTPASIIAKRRG 416 (450)
T ss_pred HHHHHHHHHhhh----hhccccCHHHHHHHHhhchhh-----hHHHHHHhccHHHHHHHHhC
Confidence 999999998776 578899999999999864332 23357788877776666654
No 320
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=1.4e-11 Score=125.76 Aligned_cols=158 Identities=23% Similarity=0.389 Sum_probs=104.5
Q ss_pred hccccChHHHHHHHHHHHHHH--------HccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccc
Q 003094 530 HKRVIGQDEAVKAISRAIRRA--------RVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFM 601 (848)
Q Consensus 530 ~~~vigq~~~~~~l~~~~~~~--------~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~ 601 (848)
++.+-|.-..+..+...+..+ +.+++.| ..++||||||+|||.+|+++|..+ +.+|+.+-.+.+.
T Consensus 131 ~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~P----kg~ll~GppGtGKTlla~~Vaa~m---g~nfl~v~ss~lv 203 (388)
T KOG0651|consen 131 FENVGGLFYQIRELREVIELPLTNPELFLRVGIKPP----KGLLLYGPPGTGKTLLARAVAATM---GVNFLKVVSSALV 203 (388)
T ss_pred HHHhCChHHHHHHHHhheEeeccCchhccccCCCCC----ceeEEeCCCCCchhHHHHHHHHhc---CCceEEeeHhhhh
Confidence 345555555555555444322 2344444 348999999999999999999998 7888887777775
Q ss_pred cccchhcccCCCCCCcccccc--cchhHHHHcCCCeEEEEcCCCcC-----------ChHHHHHHHhhhcCcEEEcCCCc
Q 003094 602 ERHTVSKLIGSPPGYVGYTEG--GQLTEAVRRRPYTVVLFDEIEKA-----------HPDVFNMMLQILEDGRLTDSKGR 668 (848)
Q Consensus 602 ~~~~~~~l~g~~~g~~g~~~~--~~l~~~~~~~~~~Vl~lDEid~l-----------~~~~~~~Ll~~le~g~~~~~~g~ 668 (848)
+. |.|++.. +..+..+++..+||||+||||.. +..+|..|+.+++.-.-.|
T Consensus 204 ~k------------yiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd---- 267 (388)
T KOG0651|consen 204 DK------------YIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFD---- 267 (388)
T ss_pred hh------------hcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccch----
Confidence 43 6665432 23344455566799999999965 4568888888876311111
Q ss_pred eeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhh--hccCeEEEcCCCCHHHHH
Q 003094 669 TVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFL--NRLDEMIVFRQLTKLEVK 746 (848)
Q Consensus 669 ~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll--~R~d~~i~f~~l~~~el~ 746 (848)
...++-+|+|+|..+. +.|+|+ +|+|..++.+-+++....
T Consensus 268 --~l~rVk~ImatNrpdt------------------------------------LdpaLlRpGRldrk~~iPlpne~~r~ 309 (388)
T KOG0651|consen 268 --TLHRVKTIMATNRPDT------------------------------------LDPALLRPGRLDRKVEIPLPNEQARL 309 (388)
T ss_pred --hcccccEEEecCCccc------------------------------------cchhhcCCccccceeccCCcchhhce
Confidence 1246679999996554 557776 688888888766554444
Q ss_pred HH
Q 003094 747 EI 748 (848)
Q Consensus 747 ~I 748 (848)
.|
T Consensus 310 ~I 311 (388)
T KOG0651|consen 310 GI 311 (388)
T ss_pred ee
Confidence 33
No 321
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=99.25 E-value=5.3e-10 Score=132.21 Aligned_cols=215 Identities=16% Similarity=0.158 Sum_probs=132.2
Q ss_pred ccCHHHHHHHHHHhhCCCCcccCcchHHHHHHHHHHhhccccChHHHHHHHHHHHHHHHccCCC-------C--------
Q 003094 493 VVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKN-------P-------- 557 (848)
Q Consensus 493 ~v~~~di~~~~~~~~g~p~~~~~~~~~~~l~~l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~-------~-------- 557 (848)
.++.+|+..+... . ........+.+.+.-.|+|++.++..|.-++-. |... |
T Consensus 422 ~~t~ed~~~I~~l-s---------~~p~i~~~L~~SiaP~I~G~e~vK~ailL~L~g---G~~k~~~~~~~~dg~~~~~~ 488 (915)
T PTZ00111 422 DFSDLQVYKILEL-S---------RNPMIYRILLDSFAPSIKARNNVKIGLLCQLFS---GNKNSSDFNKSPDACYKVDN 488 (915)
T ss_pred cCCHHHHHHHHHH-h---------cCHHHHHHHHHHhCCeEECCHHHHHHHHHHHhc---CCcccccccccccccccccc
Confidence 4667776655332 1 122345566777888999999998877555422 2110 1
Q ss_pred CCCceEEEeecCCcchHHHHHHHHHHHhcC----CCCceEEecccccccccchhcccCCCCCCcccccccchhHHHHcCC
Q 003094 558 NRPIASFIFSGPTGVGKSELAKALAAYYFG----SEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRP 633 (848)
Q Consensus 558 ~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~----~~~~~i~i~~~~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~ 633 (848)
-+.-.|+||+|+|||||+.+|+.+|+...+ ++.++..++|...... .+.. .|. ...-.+++..+.
T Consensus 489 iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~~------~d~~---tG~--~~le~GaLvlAd 557 (915)
T PTZ00111 489 FRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIKF------NESD---NGR--AMIQPGAVVLAN 557 (915)
T ss_pred ccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhhh------cccc---cCc--ccccCCcEEEcC
Confidence 123348999999999999999999997532 2345555555443110 0000 010 001123445677
Q ss_pred CeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCC--CceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHH
Q 003094 634 YTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSK--GRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRI 711 (848)
Q Consensus 634 ~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~--g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~ 711 (848)
+|+++|||++++++..|..|+++||.+.++... ....-..++.||+++|...... +-...-.+
T Consensus 558 gGtL~IDEidkms~~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gry---------d~~~s~~e------ 622 (915)
T PTZ00111 558 GGVCCIDELDKCHNESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRY---------NKNKAVIE------ 622 (915)
T ss_pred CCeEEecchhhCCHHHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCccccc---------CcccCccc------
Confidence 899999999999999999999999999875432 2233345899999999532211 10000000
Q ss_pred HHHHHHHHHhhcChhhhhccCeE-EEcCCCCHHHHHHHHHHHHH
Q 003094 712 KSLVTEELKQYFRPEFLNRLDEM-IVFRQLTKLEVKEIADIMLK 754 (848)
Q Consensus 712 ~~~~~~~l~~~~~~~ll~R~d~~-i~f~~l~~~el~~I~~~~l~ 754 (848)
.-.|+++|++|||-+ +....++++.=..|+.+++.
T Consensus 623 --------ni~Lp~~LLSRFDLIf~l~D~~d~~~D~~lA~hI~~ 658 (915)
T PTZ00111 623 --------NINISPSLFTRFDLIYLVLDHIDQDTDQLISLSIAK 658 (915)
T ss_pred --------ccCCChHHhhhhcEEEEecCCCChHHHHHHHHHHHH
Confidence 012789999999987 55566666554556655553
No 322
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=99.24 E-value=2.8e-11 Score=131.65 Aligned_cols=162 Identities=12% Similarity=0.098 Sum_probs=110.4
Q ss_pred ccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCC----CceEE-ecccccccc-cch
Q 003094 533 VIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSE----EAMIR-LDMSEFMER-HTV 606 (848)
Q Consensus 533 vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~----~~~i~-i~~~~~~~~-~~~ 606 (848)
+.|+..+.+++.+.+...+ ..+.+||+||+|+||+++|+.+|+.+++.. .++-. -.|..+... |..
T Consensus 4 yPWl~~~~~~l~~~~~~~r--------l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD 75 (334)
T PRK07993 4 YPWLRPDYEQLVGSYQAGR--------GHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPD 75 (334)
T ss_pred CCCChHHHHHHHHHHHcCC--------cceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCC
Confidence 5788889888888887532 224689999999999999999999997642 12211 112222111 111
Q ss_pred hcccCCCC--CCcccccccchhHHHH----cCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecCCeEEEEe
Q 003094 607 SKLIGSPP--GYVGYTEGGQLTEAVR----RRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMT 680 (848)
Q Consensus 607 ~~l~g~~~--g~~g~~~~~~l~~~~~----~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~t 680 (848)
-..+-... ...+.++.+.+.+.+. .+.+.|++||++|+++....|.||+.||+ ++.+++||++
T Consensus 76 ~~~i~p~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEE-----------Pp~~t~fiL~ 144 (334)
T PRK07993 76 YYTLTPEKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEE-----------PPENTWFFLA 144 (334)
T ss_pred EEEEecccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcC-----------CCCCeEEEEE
Confidence 11121110 1122223333444443 24567999999999999999999999998 4578999999
Q ss_pred cCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHH
Q 003094 681 SNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIAD 750 (848)
Q Consensus 681 sN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~ 750 (848)
|+.... +.|.+++|| +.+.|++++.+++.+.+.
T Consensus 145 t~~~~~------------------------------------lLpTIrSRC-q~~~~~~~~~~~~~~~L~ 177 (334)
T PRK07993 145 CREPAR------------------------------------LLATLRSRC-RLHYLAPPPEQYALTWLS 177 (334)
T ss_pred ECChhh------------------------------------ChHHHHhcc-ccccCCCCCHHHHHHHHH
Confidence 874333 558999999 789999999999887664
No 323
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.24 E-value=4.4e-10 Score=122.87 Aligned_cols=163 Identities=18% Similarity=0.270 Sum_probs=110.2
Q ss_pred CCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccccccccchHH-HHHHHHHHHHHhCCCeEEEEc
Q 003094 218 KNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFE-ERLKKLMEEIKQSDEIILFID 296 (848)
Q Consensus 218 ~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~~~~g~~~-~~l~~l~~~~~~~~~~IL~ID 296 (848)
.+.++||||+|.|||+|++++++...... .+..++++....+.. .+..... ..+.++-+.. +.. +|+||
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~-----~~a~v~y~~se~f~~--~~v~a~~~~~~~~Fk~~y-~~d--lllID 182 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANG-----PNARVVYLTSEDFTN--DFVKALRDNEMEKFKEKY-SLD--LLLID 182 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhC-----CCceEEeccHHHHHH--HHHHHHHhhhHHHHHHhh-ccC--eeeec
Confidence 55677999999999999999999986532 245677776554431 1111111 1111121222 233 89999
Q ss_pred ccchhhhCCCCCchHHHHHHHhhhhcCCceEEEEeeChHHHHhhhhcChhhhcccC---CCcCCCCCHHHHHHHHHHHHH
Q 003094 297 EVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATTLDEYRKHIEKDPALERRFQ---PVKVPEPSVDETIQILKGLRE 373 (848)
Q Consensus 297 Eid~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~atn~~~~~~~~~~d~al~~Rf~---~i~~~~p~~~e~~~Il~~~~~ 373 (848)
|++.+.+. ......+...+..+.+.++-+++.+-..|.. .-.+.|.|.+||. .+.+.+|+.+.+..||+...+
T Consensus 183 Diq~l~gk--~~~qeefFh~FN~l~~~~kqIvltsdr~P~~--l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~ 258 (408)
T COG0593 183 DIQFLAGK--ERTQEEFFHTFNALLENGKQIVLTSDRPPKE--LNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAE 258 (408)
T ss_pred hHhHhcCC--hhHHHHHHHHHHHHHhcCCEEEEEcCCCchh--hccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHH
Confidence 99999543 2335667788888888877444444333332 1246699999995 789999999999999998665
Q ss_pred HHhhhhcCCCChHHHHHHHhhhhcc
Q 003094 374 RYEIHHKLRYTDEALVSAAQLSYQY 398 (848)
Q Consensus 374 ~~~~~~~~~~s~~~l~~l~~~s~~~ 398 (848)
..++.++++++.+++....+-
T Consensus 259 ----~~~~~i~~ev~~~la~~~~~n 279 (408)
T COG0593 259 ----DRGIEIPDEVLEFLAKRLDRN 279 (408)
T ss_pred ----hcCCCCCHHHHHHHHHHhhcc
Confidence 578899999999988755443
No 324
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=99.24 E-value=4.2e-11 Score=128.51 Aligned_cols=164 Identities=10% Similarity=0.110 Sum_probs=111.0
Q ss_pred cccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCc---eEE-eccccccc-ccch
Q 003094 532 RVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEA---MIR-LDMSEFME-RHTV 606 (848)
Q Consensus 532 ~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~---~i~-i~~~~~~~-~~~~ 606 (848)
-+.|+.+..+.+.+.+... +..+.+||+||.|+||+++|+.+|+.+.+.+.. +-. -+|..+.. .|..
T Consensus 4 ~yPWl~~~~~~l~~~~~~~--------rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD 75 (319)
T PRK06090 4 DYPWLVPVWQNWKAGLDAG--------RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPD 75 (319)
T ss_pred CcccHHHHHHHHHHHHHcC--------CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCC
Confidence 3578888888888887643 222459999999999999999999999765421 111 11111111 1111
Q ss_pred hcccCCC--CCCcccccccchhHHHHc----CCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecCCeEEEEe
Q 003094 607 SKLIGSP--PGYVGYTEGGQLTEAVRR----RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMT 680 (848)
Q Consensus 607 ~~l~g~~--~g~~g~~~~~~l~~~~~~----~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~t 680 (848)
...+... ....+.+..+.+.+.+.. +++.|++||++|+++....|.||+.||+ ++.+++||++
T Consensus 76 ~~~i~p~~~~~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEE-----------Pp~~t~fiL~ 144 (319)
T PRK06090 76 LHVIKPEKEGKSITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEE-----------PAPNCLFLLV 144 (319)
T ss_pred EEEEecCcCCCcCCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcC-----------CCCCeEEEEE
Confidence 1112111 011222222333334433 4478999999999999999999999998 4578999999
Q ss_pred cCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHHH
Q 003094 681 SNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADI 751 (848)
Q Consensus 681 sN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~~ 751 (848)
|+.... +.|.+++|| ..+.|++++.+++.+.+..
T Consensus 145 t~~~~~------------------------------------lLpTI~SRC-q~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 145 THNQKR------------------------------------LLPTIVSRC-QQWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred ECChhh------------------------------------ChHHHHhcc-eeEeCCCCCHHHHHHHHHH
Confidence 874333 458899999 9999999999998877743
No 325
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.24 E-value=4.8e-11 Score=127.01 Aligned_cols=153 Identities=13% Similarity=0.124 Sum_probs=106.6
Q ss_pred ccCChHHHHHHHHHhccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccccccccchHHHH-
Q 003094 199 VVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEER- 277 (848)
Q Consensus 199 iiG~~~~~~~l~~~l~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~~~~g~~~~~- 277 (848)
.+-..+..+.+...+. ..++++|.||||||||++++.+|+.+ +.+++.++++.........|...-.
T Consensus 47 y~f~~~~~~~vl~~l~--~~~~ilL~G~pGtGKTtla~~lA~~l----------~~~~~rV~~~~~l~~~DliG~~~~~l 114 (327)
T TIGR01650 47 YLFDKATTKAICAGFA--YDRRVMVQGYHGTGKSTHIEQIAARL----------NWPCVRVNLDSHVSRIDLVGKDAIVL 114 (327)
T ss_pred ccCCHHHHHHHHHHHh--cCCcEEEEeCCCChHHHHHHHHHHHH----------CCCeEEEEecCCCChhhcCCCceeec
Confidence 3444455566666554 35789999999999999999999999 5667777765554433333321100
Q ss_pred ---------HHHHHHHHHhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhc----------------CCceEEEEee
Q 003094 278 ---------LKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLA----------------RGELQCIGAT 332 (848)
Q Consensus 278 ---------l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~----------------~~~v~vI~at 332 (848)
....+..+.. .+++|++||+|..-+ +++..|..+++ ...+.+|+|+
T Consensus 115 ~~g~~~~~f~~GpL~~A~~-~g~illlDEin~a~p--------~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~ 185 (327)
T TIGR01650 115 KDGKQITEFRDGILPWALQ-HNVALCFDEYDAGRP--------DVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATA 185 (327)
T ss_pred cCCcceeEEecCcchhHHh-CCeEEEechhhccCH--------HHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEee
Confidence 0011222222 357899999998743 35666555554 1248899999
Q ss_pred ChHH-------HHhhhhcChhhhcccC-CCcCCCCCHHHHHHHHHHHH
Q 003094 333 TLDE-------YRKHIEKDPALERRFQ-PVKVPEPSVDETIQILKGLR 372 (848)
Q Consensus 333 n~~~-------~~~~~~~d~al~~Rf~-~i~~~~p~~~e~~~Il~~~~ 372 (848)
|+.+ |.....++.++++||. .+.++.|+.++-.+|+....
T Consensus 186 Np~g~Gd~~G~y~Gt~~l~~A~lDRF~i~~~~~Yp~~e~E~~Il~~~~ 233 (327)
T TIGR01650 186 NTIGLGDTTGLYHGTQQINQAQMDRWSIVTTLNYLEHDNEAAIVLAKA 233 (327)
T ss_pred CCCCcCCCCcceeeeecCCHHHHhheeeEeeCCCCCHHHHHHHHHhhc
Confidence 9976 7778889999999997 56899999999999987654
No 326
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.23 E-value=1.7e-10 Score=124.16 Aligned_cols=208 Identities=20% Similarity=0.230 Sum_probs=129.5
Q ss_pred cccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcC----CCCceEEecc----cccccc
Q 003094 532 RVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFG----SEEAMIRLDM----SEFMER 603 (848)
Q Consensus 532 ~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~----~~~~~i~i~~----~~~~~~ 603 (848)
+++|++++++.+...++.+..+...++ ..++|+||||+|||++|++|++.+.. ...+++.+.. +.+.+.
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r---~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~~sp~~e~ 128 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERK---QILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGEESPMHED 128 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCC---cEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCCCCCCccC
Confidence 899999999999999988876654332 24899999999999999999998722 1235554433 111100
Q ss_pred ------------------------------------------------------------------------cchhcccC
Q 003094 604 ------------------------------------------------------------------------HTVSKLIG 611 (848)
Q Consensus 604 ------------------------------------------------------------------------~~~~~l~g 611 (848)
..++.|+|
T Consensus 129 Pl~l~p~~~r~~~~~~~~~~~~~~~~~l~p~c~~~l~~e~~gd~~~~~V~~~~~s~~~~~gi~~~~P~D~~~qdi~~L~G 208 (361)
T smart00763 129 PLHLFPDELREDLEDEYGIPRRRLEGDLSPWCRKRLDEEYGGDIEKFEVVRVNFSELRRIGIGKFEPKDENNQDISELTG 208 (361)
T ss_pred CcccCCHHHHHHHHHHhCCChhhcCCCCCHHHHHHHHHHhCCCcceEEEEEecCCeecceEEEEECCCCCCcccHHHHhc
Confidence 00111111
Q ss_pred CCC-----CCcccccccc--hhHHHHcCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCC
Q 003094 612 SPP-----GYVGYTEGGQ--LTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVG 684 (848)
Q Consensus 612 ~~~-----g~~g~~~~~~--l~~~~~~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~ 684 (848)
... .| +.+.... +.+.+-++.+||+-|+|+.|++.++++.|+.+++++.+...++.....-+.+||++||..
T Consensus 209 ~vd~~k~~~~-~~~dp~a~~~~G~l~~aNrGi~~f~Ei~K~~~~~l~~LL~~~qE~~v~~~~~~~~~~~d~liia~sNe~ 287 (361)
T smart00763 209 KVDIRKLEIY-SESDPRAFSYDGALNRANRGILEFVEMFKADIKFLHPLLTATQEGNIKGTGGFAMIPIDGLIIAHSNES 287 (361)
T ss_pred ccCHHHhccc-CCCCCeEEeccCccccccCceEEEeehhcCCHHHHHHHhhhhhcceEecCCcccccccceEEEEeCCHH
Confidence 100 00 0000000 113444566789999999999999999999999999998554332333467999999832
Q ss_pred chhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCC-CHHHHHHHHHHHHHHHHHHHhcC
Q 003094 685 SSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQL-TKLEVKEIADIMLKEVFDRLKTK 763 (848)
Q Consensus 685 ~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l-~~~el~~I~~~~l~~~~~~~~~~ 763 (848)
.- . .........+|++|| .+|.++.+ +.++=.+|.+..+.. ..
T Consensus 288 e~----------------------~-------~~~~~k~~eaf~dR~-~~i~vpY~l~~~~E~~Iy~k~~~~------s~ 331 (361)
T smart00763 288 EW----------------------Q-------RFKSNKKNEALLDRI-IKVKVPYCLRVSEEAQIYEKLLRN------SD 331 (361)
T ss_pred HH----------------------h-------hhhccccchhhhhce-EEEeCCCcCCHHHHHHHHHHHhcc------Cc
Confidence 10 0 000012358899999 57777754 445556677666643 11
Q ss_pred CCeEeecHHHHHHHHH
Q 003094 764 DIELQVTERFRERVVE 779 (848)
Q Consensus 764 ~~~l~i~~~a~~~l~~ 779 (848)
....++.|.+++.++.
T Consensus 332 ~~~~~~aP~~le~aa~ 347 (361)
T smart00763 332 LTEAHIAPHTLEMAAL 347 (361)
T ss_pred CcccccCchHHHHHHH
Confidence 1245677877776665
No 327
>PRK06620 hypothetical protein; Validated
Probab=99.23 E-value=1.9e-10 Score=117.57 Aligned_cols=136 Identities=7% Similarity=0.042 Sum_probs=98.0
Q ss_pred CCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccccccccchHHHHHHHHHHHHHhCCCeEEEEccc
Q 003094 219 NNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEV 298 (848)
Q Consensus 219 ~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEi 298 (848)
++++|+||||+|||++++++++... . +.+..... ....+ .. .-+|+|||+
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~----------~--~~~~~~~~-------------~~~~~---~~--~d~lliDdi 94 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN----------A--YIIKDIFF-------------NEEIL---EK--YNAFIIEDI 94 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC----------C--EEcchhhh-------------chhHH---hc--CCEEEEecc
Confidence 5689999999999999999887652 1 11110000 00111 12 238999999
Q ss_pred chhhhCCCCCchHHHHHHHhhhhcCCceEEEEeeChHHHHhhhhcChhhhcccC---CCcCCCCCHHHHHHHHHHHHHHH
Q 003094 299 HTLIGAGAAEGAIDAANILKPSLARGELQCIGATTLDEYRKHIEKDPALERRFQ---PVKVPEPSVDETIQILKGLRERY 375 (848)
Q Consensus 299 d~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~atn~~~~~~~~~~d~al~~Rf~---~i~~~~p~~~e~~~Il~~~~~~~ 375 (848)
|.+. ...+..++..+.+.+..++|++++.+.. +.+ |++++|+. .+.+.+|+.+++..+++.....
T Consensus 95 ~~~~-------~~~lf~l~N~~~e~g~~ilits~~~p~~---l~l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~- 162 (214)
T PRK06620 95 ENWQ-------EPALLHIFNIINEKQKYLLLTSSDKSRN---FTL-PDLSSRIKSVLSILLNSPDDELIKILIFKHFSI- 162 (214)
T ss_pred ccch-------HHHHHHHHHHHHhcCCEEEEEcCCCccc---cch-HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHH-
Confidence 9651 2345566666678888888888877763 356 89999997 8999999999999999887763
Q ss_pred hhhhcCCCChHHHHHHHhhhhccc
Q 003094 376 EIHHKLRYTDEALVSAAQLSYQYI 399 (848)
Q Consensus 376 ~~~~~~~~s~~~l~~l~~~s~~~~ 399 (848)
.++.++++++++++..+.+-+
T Consensus 163 ---~~l~l~~ev~~~L~~~~~~d~ 183 (214)
T PRK06620 163 ---SSVTISRQIIDFLLVNLPREY 183 (214)
T ss_pred ---cCCCCCHHHHHHHHHHccCCH
Confidence 578899999999998776643
No 328
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.22 E-value=2.5e-10 Score=129.10 Aligned_cols=197 Identities=19% Similarity=0.241 Sum_probs=124.3
Q ss_pred hhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCC--CCceEEecccccccccc-
Q 003094 529 LHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGS--EEAMIRLDMSEFMERHT- 605 (848)
Q Consensus 529 l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~--~~~~i~i~~~~~~~~~~- 605 (848)
..+.++|.+..++.|...+.....+ ..| .+++++||||||||++++.+++.+... +..++.+||........
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~----~~~-~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~ 102 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRG----SRP-LNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAI 102 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCC----CCC-CeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHH
Confidence 3457889999999999988765433 122 348999999999999999999877432 46788899876543211
Q ss_pred ----hhcccCCCCCCcccccc---cchhHHHHc-CCCeEEEEcCCCcCC----hHHHHHHHhhhcCcEEEcCCCceeecC
Q 003094 606 ----VSKLIGSPPGYVGYTEG---GQLTEAVRR-RPYTVVLFDEIEKAH----PDVFNMMLQILEDGRLTDSKGRTVDFK 673 (848)
Q Consensus 606 ----~~~l~g~~~g~~g~~~~---~~l~~~~~~-~~~~Vl~lDEid~l~----~~~~~~Ll~~le~g~~~~~~g~~v~~~ 673 (848)
...+.+.+....|.... ..+.+.+.. ..+.||+|||+|.+. .+.+..|++.++... ..
T Consensus 103 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~----------~~ 172 (394)
T PRK00411 103 FSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYP----------GA 172 (394)
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccC----------CC
Confidence 11222312112222111 122333333 345789999999986 456666666665421 12
Q ss_pred CeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccC-eEEEcCCCCHHHHHHHHHHH
Q 003094 674 NTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLD-EMIVFRQLTKLEVKEIADIM 752 (848)
Q Consensus 674 ~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d-~~i~f~~l~~~el~~I~~~~ 752 (848)
++.+|+++|... +...+.+.+.+|+. ..|.|+||+.+++.+|+...
T Consensus 173 ~v~vI~i~~~~~---------------------------------~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r 219 (394)
T PRK00411 173 RIGVIGISSDLT---------------------------------FLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDR 219 (394)
T ss_pred eEEEEEEECCcc---------------------------------hhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHH
Confidence 567888877321 11124566666663 46899999999999999776
Q ss_pred HHHHHHHHhcCCCeEeecHHHHHHHHHc
Q 003094 753 LKEVFDRLKTKDIELQVTERFRERVVEE 780 (848)
Q Consensus 753 l~~~~~~~~~~~~~l~i~~~a~~~l~~~ 780 (848)
+.. .+ ..-.+++++++.+++.
T Consensus 220 ~~~---~~----~~~~~~~~~l~~i~~~ 240 (394)
T PRK00411 220 VEE---GF----YPGVVDDEVLDLIADL 240 (394)
T ss_pred HHh---hc----ccCCCCHhHHHHHHHH
Confidence 642 11 1123788999988875
No 329
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=99.22 E-value=1.1e-10 Score=126.69 Aligned_cols=161 Identities=16% Similarity=0.154 Sum_probs=105.0
Q ss_pred ccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCC-----CceEEe-ccccccc-ccc
Q 003094 533 VIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSE-----EAMIRL-DMSEFME-RHT 605 (848)
Q Consensus 533 vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~-----~~~i~i-~~~~~~~-~~~ 605 (848)
+.|+....+++.... ++-.+.+||+||+|+||+++|+.+|+.+.+.. .++-.+ .|..+.. .|.
T Consensus 3 yPW~~~~~~~l~~~~----------~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HP 72 (342)
T PRK06964 3 YPWQTDDWNRLQALR----------ARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHP 72 (342)
T ss_pred CcccHHHHHHHHHhc----------CCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCC
Confidence 467777777766531 23234699999999999999999999997643 122111 1111111 111
Q ss_pred hhcccCCC--------------------C--------CCcccccccchhHHHH----cCCCeEEEEcCCCcCChHHHHHH
Q 003094 606 VSKLIGSP--------------------P--------GYVGYTEGGQLTEAVR----RRPYTVVLFDEIEKAHPDVFNMM 653 (848)
Q Consensus 606 ~~~l~g~~--------------------~--------g~~g~~~~~~l~~~~~----~~~~~Vl~lDEid~l~~~~~~~L 653 (848)
...++... . ...+.++.+.+.+.+. .+++.|++||++|++++...|.|
T Consensus 73 D~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaL 152 (342)
T PRK06964 73 DYRIVRPEALAAEAPGAADEAKEADADEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNVAAANAL 152 (342)
T ss_pred CEEEEecccccccccccccccccchhhcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCHHHHHHH
Confidence 11112110 0 0111111122223332 24567999999999999999999
Q ss_pred HhhhcCcEEEcCCCceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCe
Q 003094 654 LQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDE 733 (848)
Q Consensus 654 l~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~ 733 (848)
|+.||+ ++.+++||++|+.... +.|.+++|| .
T Consensus 153 LKtLEE-----------Pp~~t~fiL~t~~~~~------------------------------------LLpTI~SRc-q 184 (342)
T PRK06964 153 LKTLEE-----------PPPGTVFLLVSARIDR------------------------------------LLPTILSRC-R 184 (342)
T ss_pred HHHhcC-----------CCcCcEEEEEECChhh------------------------------------CcHHHHhcC-E
Confidence 999998 4578899999874332 568999999 9
Q ss_pred EEEcCCCCHHHHHHHHHH
Q 003094 734 MIVFRQLTKLEVKEIADI 751 (848)
Q Consensus 734 ~i~f~~l~~~el~~I~~~ 751 (848)
.+.|+|++.+++.+.+..
T Consensus 185 ~i~~~~~~~~~~~~~L~~ 202 (342)
T PRK06964 185 QFPMTVPAPEAAAAWLAA 202 (342)
T ss_pred EEEecCCCHHHHHHHHHH
Confidence 999999999999887743
No 330
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.21 E-value=3e-10 Score=122.76 Aligned_cols=193 Identities=19% Similarity=0.205 Sum_probs=129.1
Q ss_pred CCCCccCChHHHHHHHHHhccCCC-CCcEEECCCCCcHHHHHHHHHHHhhCCCCC--------CCCCCceEEEEeCCccc
Q 003094 195 KLDPVVGRQPQIERVVQILGRRTK-NNPCLIGEPGVGKTAIAEGLAQRIASGDVP--------DTIEGKKVITLDMGLLV 265 (848)
Q Consensus 195 ~ld~iiG~~~~~~~l~~~l~~~~~-~~iLL~GppGtGKT~la~~la~~l~~~~~~--------~~l~~~~v~~~~~~~l~ 265 (848)
.|++++|++..++.+...+..... ...||+||+|+||+++|.++|+.+.+.... .......++.+......
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~ 81 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQH 81 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccc
Confidence 478899999999999999987764 567899999999999999999999765311 12233344544432111
Q ss_pred ccccc-------cc--------hHHHHHHHHHHHHH----hCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhc-CCc
Q 003094 266 AGTKY-------RG--------EFEERLKKLMEEIK----QSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLA-RGE 325 (848)
Q Consensus 266 ~~~~~-------~g--------~~~~~l~~l~~~~~----~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~-~~~ 325 (848)
.|... .| -..+.++.+.+.+. .++..|++||++|.|. ....|.|++.+| .++
T Consensus 82 ~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~--------~~aaNaLLK~LEEPp~ 153 (314)
T PRK07399 82 QGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMN--------EAAANALLKTLEEPGN 153 (314)
T ss_pred cccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcC--------HHHHHHHHHHHhCCCC
Confidence 11100 00 01134455555543 2456799999999994 447888988887 335
Q ss_pred eEEEEeeChHHHHhhhhcChhhhcccCCCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCCh
Q 003094 326 LQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLP 405 (848)
Q Consensus 326 v~vI~atn~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~p 405 (848)
..+|.+|+.++ .+-|.++||++.+.|++++.++..+++...... .. .+..+..++.++.|- |
T Consensus 154 ~~fILi~~~~~-----~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~----~~---~~~~~~~l~~~a~Gs------~ 215 (314)
T PRK07399 154 GTLILIAPSPE-----SLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDE----EI---LNINFPELLALAQGS------P 215 (314)
T ss_pred CeEEEEECChH-----hCcHHHHhhceEEecCCCCHHHHHHHHHHhhcc----cc---chhHHHHHHHHcCCC------H
Confidence 56777777666 689999999999999999999998888864321 11 111234555555443 5
Q ss_pred hhHHHHHH
Q 003094 406 DKAIDLID 413 (848)
Q Consensus 406 ~~a~~ll~ 413 (848)
.++++++.
T Consensus 216 ~~al~~l~ 223 (314)
T PRK07399 216 GAAIANIE 223 (314)
T ss_pred HHHHHHHH
Confidence 55666654
No 331
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.21 E-value=2e-10 Score=121.97 Aligned_cols=96 Identities=25% Similarity=0.223 Sum_probs=67.7
Q ss_pred CeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCC-ceEEEEeeChHH-------HHhhhhcChhhhcccCCCcCCCCCH
Q 003094 290 EIILFIDEVHTLIGAGAAEGAIDAANILKPSLARG-ELQCIGATTLDE-------YRKHIEKDPALERRFQPVKVPEPSV 361 (848)
Q Consensus 290 ~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~-~v~vI~atn~~~-------~~~~~~~d~al~~Rf~~i~~~~p~~ 361 (848)
|.||||||+|.| +.+....|.+.++.. .-++|.+||+.- +....-++..|++|+-.|...+++.
T Consensus 279 pGVLFIDEvHmL--------DiEcFsfLnralEs~~sPiiIlATNRg~~~irGt~~~sphGiP~DlLDRllII~t~py~~ 350 (398)
T PF06068_consen 279 PGVLFIDEVHML--------DIECFSFLNRALESELSPIIILATNRGITKIRGTDIISPHGIPLDLLDRLLIIRTKPYSE 350 (398)
T ss_dssp E-EEEEESGGGS--------BHHHHHHHHHHHTSTT--EEEEEES-SEEE-BTTS-EEETT--HHHHTTEEEEEE----H
T ss_pred cceEEecchhhc--------cHHHHHHHHHHhcCCCCcEEEEecCceeeeccCccCcCCCCCCcchHhhcEEEECCCCCH
Confidence 789999999999 677899999999854 467777887422 2223456789999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhc
Q 003094 362 DETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQ 397 (848)
Q Consensus 362 ~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~ 397 (848)
++..+|++..++ ..++.++++++..+..+...
T Consensus 351 ~ei~~Il~iR~~----~E~v~i~~~al~~L~~ig~~ 382 (398)
T PF06068_consen 351 EEIKQILKIRAK----EEDVEISEDALDLLTKIGVE 382 (398)
T ss_dssp HHHHHHHHHHHH----HCT--B-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhh----hhcCcCCHHHHHHHHHHhhh
Confidence 999999998887 57899999999999876544
No 332
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.21 E-value=3.2e-10 Score=131.21 Aligned_cols=195 Identities=16% Similarity=0.155 Sum_probs=119.6
Q ss_pred HHHHHHHhhccccChHHHHHHHHHHHHHHHccCCCC-------CCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEE
Q 003094 522 LLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNP-------NRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIR 594 (848)
Q Consensus 522 l~~l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~~-------~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~ 594 (848)
+..+.+.+...++|++.++..+.-++- |...+ -+.-.|+||+|+||||||++|+.+++.+.+ ..++.
T Consensus 194 ~~~l~~si~p~i~G~~~~k~~l~l~l~----gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r--~~~~~ 267 (509)
T smart00350 194 YERLSRSLAPSIYGHEDIKKAILLLLF----GGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPR--AVYTT 267 (509)
T ss_pred HHHHHHhhCccccCcHHHHHHHHHHHh----CCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCc--ceEcC
Confidence 456677788899999988666654442 22111 112237999999999999999999998632 23332
Q ss_pred e---cccccccccchhcccCCCCCCcccccccchhHHHHcCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCC-Ccee
Q 003094 595 L---DMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSK-GRTV 670 (848)
Q Consensus 595 i---~~~~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~-g~~v 670 (848)
. ++..+.. . .+..+ ..|. ...-.+.+..+.+++++|||++++++..|..|+++||.+.++... |...
T Consensus 268 ~~~~~~~~l~~----~-~~~~~--~~g~--~~~~~G~l~~A~~Gil~iDEi~~l~~~~q~~L~e~me~~~i~i~k~G~~~ 338 (509)
T smart00350 268 GKGSSAVGLTA----A-VTRDP--ETRE--FTLEGGALVLADNGVCCIDEFDKMDDSDRTAIHEAMEQQTISIAKAGITT 338 (509)
T ss_pred CCCCCcCCccc----c-ceEcc--Ccce--EEecCccEEecCCCEEEEechhhCCHHHHHHHHHHHhcCEEEEEeCCEEE
Confidence 1 1111110 0 00000 0010 001122344577899999999999999999999999999875432 3222
Q ss_pred -ecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEE-EcCCCCHHHHHHH
Q 003094 671 -DFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMI-VFRQLTKLEVKEI 748 (848)
Q Consensus 671 -~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i-~f~~l~~~el~~I 748 (848)
-..++.+|+|+|.-... |+....- .++ -.+++++++|||-++ ...+++++.-.+|
T Consensus 339 ~l~~~~~viAa~NP~~g~---------y~~~~~~------------~~n--~~l~~~lLsRFdLi~~~~d~~~~~~d~~i 395 (509)
T smart00350 339 TLNARCSVLAAANPIGGR---------YDPKLTP------------EEN--IDLPAPILSRFDLLFVVLDEVDEERDREL 395 (509)
T ss_pred EecCCcEEEEEeCCCCcc---------cCCCcCh------------hhc--cCCChHHhCceeeEEEecCCCChHHHHHH
Confidence 23588999999943211 1100000 000 137899999998864 4467777777788
Q ss_pred HHHHHH
Q 003094 749 ADIMLK 754 (848)
Q Consensus 749 ~~~~l~ 754 (848)
+++.+.
T Consensus 396 ~~~i~~ 401 (509)
T smart00350 396 AKHVVD 401 (509)
T ss_pred HHHHHH
Confidence 877664
No 333
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=2e-11 Score=132.24 Aligned_cols=200 Identities=21% Similarity=0.350 Sum_probs=133.4
Q ss_pred EEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhcccCCCCCCcccccc--cchhHHHHc--------C
Q 003094 563 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEG--GQLTEAVRR--------R 632 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~~g~~~~--~~l~~~~~~--------~ 632 (848)
.+|||||||||||.+||.|..++...+..+ +|..++.++ |||++|. +.|+..+.+ +
T Consensus 258 GiLLyGPPGTGKTLiARqIGkMLNArePKI--VNGPeIL~K------------YVGeSE~NvR~LFaDAEeE~r~~g~~S 323 (744)
T KOG0741|consen 258 GILLYGPPGTGKTLIARQIGKMLNAREPKI--VNGPEILNK------------YVGESEENVRKLFADAEEEQRRLGANS 323 (744)
T ss_pred eEEEECCCCCChhHHHHHHHHHhcCCCCcc--cCcHHHHHH------------hhcccHHHHHHHHHhHHHHHHhhCccC
Confidence 499999999999999999999997666555 466666554 8888776 445443321 1
Q ss_pred CCeEEEEcCCCcC-------------ChHHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCchhhhccCccccccc
Q 003094 633 PYTVVLFDEIEKA-------------HPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDL 699 (848)
Q Consensus 633 ~~~Vl~lDEid~l-------------~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~ 699 (848)
.--||+|||||.+ |..+.|.||.-|+.-. ...|+++|.-||...
T Consensus 324 gLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVe---------qLNNILVIGMTNR~D-------------- 380 (744)
T KOG0741|consen 324 GLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVE---------QLNNILVIGMTNRKD-------------- 380 (744)
T ss_pred CceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHH---------hhhcEEEEeccCchh--------------
Confidence 2239999999964 5679999999998622 346889998888322
Q ss_pred CCCcccccHHHHHHHHHHHHHhhcChhhh--hccCeEEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCeEeecHHHHHHH
Q 003094 700 DYDEKDSSYNRIKSLVTEELKQYFRPEFL--NRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERV 777 (848)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~l~~~~~~~ll--~R~d~~i~f~~l~~~el~~I~~~~l~~~~~~~~~~~~~l~i~~~a~~~l 777 (848)
.++.+|+ +|+...+...-+++.-..+|++..-+++.+.- ...-.++ ++.|
T Consensus 381 ----------------------lIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~---~l~~dVd---l~el 432 (744)
T KOG0741|consen 381 ----------------------LIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENN---KLSADVD---LKEL 432 (744)
T ss_pred ----------------------hHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcC---CCCCCcC---HHHH
Confidence 1334444 68866788888888888888877776654321 1122233 2344
Q ss_pred HHccCCCCCCchHHHHHHHHHHHHHHHHHHHccccCCCCEEEEEEcCCCcEEEEcCC
Q 003094 778 VEEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDVDSDGNVTVLNGS 834 (848)
Q Consensus 778 ~~~~~~~~~g~r~L~~~i~~~l~~~l~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~ 834 (848)
+. ...+|..-+|.-.+. .+-+-+ +.+.++.|.+..++.++..++.|...+
T Consensus 433 A~--lTKNfSGAEleglVk----sA~S~A-~nR~vk~~~~~~~~~~~~e~lkV~r~D 482 (744)
T KOG0741|consen 433 AA--LTKNFSGAELEGLVK----SAQSFA-MNRHVKAGGKVEVDPVAIENLKVTRGD 482 (744)
T ss_pred HH--HhcCCchhHHHHHHH----HHHHHH-HHhhhccCcceecCchhhhheeecHHH
Confidence 44 344566656654444 444444 334467776777777777677776654
No 334
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.20 E-value=8.6e-11 Score=129.19 Aligned_cols=144 Identities=28% Similarity=0.396 Sum_probs=96.4
Q ss_pred cccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCC---------------------
Q 003094 532 RVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEE--------------------- 590 (848)
Q Consensus 532 ~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~--------------------- 590 (848)
.++++++++..+........ +.| +.+||+||||+|||++|.++|+.+++...
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~------~~~-halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG------RLP-HALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHP 74 (325)
T ss_pred CcccchhHHHHHHHHHHhcC------CCC-ceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCC
Confidence 46677777777776666432 111 13999999999999999999999976442
Q ss_pred ceEEecccccccccchhcccCCCCCCcccccccchhHHHH----cCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCC
Q 003094 591 AMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVR----RRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSK 666 (848)
Q Consensus 591 ~~i~i~~~~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~----~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~ 666 (848)
.++.++-+.....+ +..+..+.+.+... .++..|++|||+|.++++.+|+|++.+|+.
T Consensus 75 d~lel~~s~~~~~~------------i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~A~nallk~lEep------ 136 (325)
T COG0470 75 DFLELNPSDLRKID------------IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEEP------ 136 (325)
T ss_pred ceEEecccccCCCc------------chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHHHHHHHHHHhccC------
Confidence 22222222211100 00111111212111 145689999999999999999999999983
Q ss_pred CceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCH
Q 003094 667 GRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTK 742 (848)
Q Consensus 667 g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~ 742 (848)
..+++||++||.... +.|.+.+|| ..+.|+|++.
T Consensus 137 -----~~~~~~il~~n~~~~------------------------------------il~tI~SRc-~~i~f~~~~~ 170 (325)
T COG0470 137 -----PKNTRFILITNDPSK------------------------------------ILPTIRSRC-QRIRFKPPSR 170 (325)
T ss_pred -----CCCeEEEEEcCChhh------------------------------------ccchhhhcc-eeeecCCchH
Confidence 378999999995444 336899999 8999998544
No 335
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.20 E-value=2.7e-10 Score=114.69 Aligned_cols=162 Identities=20% Similarity=0.170 Sum_probs=108.8
Q ss_pred HHHHHhccCCCC-CcEEECCCCCcHHHHHHHHHHHhhCCCCCCC--------------CCCceEEEEeCCcccccccccc
Q 003094 208 RVVQILGRRTKN-NPCLIGEPGVGKTAIAEGLAQRIASGDVPDT--------------IEGKKVITLDMGLLVAGTKYRG 272 (848)
Q Consensus 208 ~l~~~l~~~~~~-~iLL~GppGtGKT~la~~la~~l~~~~~~~~--------------l~~~~v~~~~~~~l~~~~~~~g 272 (848)
.+.+.+..+... .+||+||+|+|||++++.+++.+........ .....+..++...- .
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~----~--- 75 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQ----S--- 75 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccC----c---
Confidence 345556565554 4789999999999999999999875310000 01112333322111 0
Q ss_pred hHHHHHHHHHHHHHh----CCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcC--CceEEEEeeChHHHHhhhhcChh
Q 003094 273 EFEERLKKLMEEIKQ----SDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR--GELQCIGATTLDEYRKHIEKDPA 346 (848)
Q Consensus 273 ~~~~~l~~l~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~atn~~~~~~~~~~d~a 346 (848)
-..+.++.+.+.+.. +...|++|||+|.+.+ +.++.|+..++. ....+|.+|+... .+.++
T Consensus 76 ~~~~~i~~i~~~~~~~~~~~~~kviiide~~~l~~--------~~~~~Ll~~le~~~~~~~~il~~~~~~-----~l~~~ 142 (188)
T TIGR00678 76 IKVDQVRELVEFLSRTPQESGRRVVIIEDAERMNE--------AAANALLKTLEEPPPNTLFILITPSPE-----KLLPT 142 (188)
T ss_pred CCHHHHHHHHHHHccCcccCCeEEEEEechhhhCH--------HHHHHHHHHhcCCCCCeEEEEEECChH-----hChHH
Confidence 112345555555543 4567999999999943 367788888874 3466777776553 68899
Q ss_pred hhcccCCCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhccc
Q 003094 347 LERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYI 399 (848)
Q Consensus 347 l~~Rf~~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~ 399 (848)
+.+|+..+.|++|+.++..+++... + ++++++..++..+.+..
T Consensus 143 i~sr~~~~~~~~~~~~~~~~~l~~~--------g--i~~~~~~~i~~~~~g~~ 185 (188)
T TIGR00678 143 IRSRCQVLPFPPLSEEALLQWLIRQ--------G--ISEEAAELLLALAGGSP 185 (188)
T ss_pred HHhhcEEeeCCCCCHHHHHHHHHHc--------C--CCHHHHHHHHHHcCCCc
Confidence 9999999999999999988877643 2 67888888888777643
No 336
>PRK09087 hypothetical protein; Validated
Probab=99.20 E-value=6.7e-10 Score=114.56 Aligned_cols=165 Identities=13% Similarity=0.084 Sum_probs=110.4
Q ss_pred CCCCccC-C-hH-HHHHHHHHhccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCccccccccc
Q 003094 195 KLDPVVG-R-QP-QIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYR 271 (848)
Q Consensus 195 ~ld~iiG-~-~~-~~~~l~~~l~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~~~~ 271 (848)
++++++. . +. .+..+.+.. ....+.++|+||+|+|||++++++++.. +. .+++...+.
T Consensus 19 ~~~~Fi~~~~N~~a~~~l~~~~-~~~~~~l~l~G~~GsGKThLl~~~~~~~----------~~--~~i~~~~~~------ 79 (226)
T PRK09087 19 GRDDLLVTESNRAAVSLVDHWP-NWPSPVVVLAGPVGSGKTHLASIWREKS----------DA--LLIHPNEIG------ 79 (226)
T ss_pred ChhceeecCchHHHHHHHHhcc-cCCCCeEEEECCCCCCHHHHHHHHHHhc----------CC--EEecHHHcc------
Confidence 5777663 3 22 333332222 2222337899999999999999988764 22 234332211
Q ss_pred chHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCCceEEEEeeChHHHHhhhhcChhhhccc
Q 003094 272 GEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATTLDEYRKHIEKDPALERRF 351 (848)
Q Consensus 272 g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~atn~~~~~~~~~~d~al~~Rf 351 (848)
...+..+.. .+|+|||++.+. .....+...+....+.+..++|++++.+.... ...+.+.+||
T Consensus 80 -------~~~~~~~~~---~~l~iDDi~~~~-----~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~--~~~~dL~SRl 142 (226)
T PRK09087 80 -------SDAANAAAE---GPVLIEDIDAGG-----FDETGLFHLINSVRQAGTSLLMTSRLWPSSWN--VKLPDLKSRL 142 (226)
T ss_pred -------hHHHHhhhc---CeEEEECCCCCC-----CCHHHHHHHHHHHHhCCCeEEEECCCChHHhc--cccccHHHHH
Confidence 111222222 278899999762 12345667777777778777777776665422 2378999999
Q ss_pred ---CCCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhccc
Q 003094 352 ---QPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYI 399 (848)
Q Consensus 352 ---~~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~ 399 (848)
..+++.+|+.+++.++++..++. .++.++++++.++++.+.+-+
T Consensus 143 ~~gl~~~l~~pd~e~~~~iL~~~~~~----~~~~l~~ev~~~La~~~~r~~ 189 (226)
T PRK09087 143 KAATVVEIGEPDDALLSQVIFKLFAD----RQLYVDPHVVYYLVSRMERSL 189 (226)
T ss_pred hCCceeecCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHhhhhH
Confidence 48999999999999999988874 578899999999998776543
No 337
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.20 E-value=1.1e-10 Score=142.28 Aligned_cols=164 Identities=20% Similarity=0.316 Sum_probs=111.4
Q ss_pred HHHHhhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcC-------CCCceEEecc
Q 003094 525 MEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFG-------SEEAMIRLDM 597 (848)
Q Consensus 525 l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~-------~~~~~i~i~~ 597 (848)
.++.-.+.++|+++.+.++...+.+.. ..+++|+||||||||++|+.+|..+.. .+.+++.+|+
T Consensus 172 ~r~~~l~~vigr~~ei~~~i~iL~r~~---------~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l 242 (857)
T PRK10865 172 AEQGKLDPVIGRDEEIRRTIQVLQRRT---------KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDM 242 (857)
T ss_pred HhcCCCCcCCCCHHHHHHHHHHHhcCC---------cCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEeh
Confidence 344445689999999888887776431 235899999999999999999998732 2456666666
Q ss_pred cccccccchhcccCCCCCCcccccc--cchhHHH-HcCCCeEEEEcCCCcCCh--------HHHHHHHhhhcCcEEEcCC
Q 003094 598 SEFMERHTVSKLIGSPPGYVGYTEG--GQLTEAV-RRRPYTVVLFDEIEKAHP--------DVFNMMLQILEDGRLTDSK 666 (848)
Q Consensus 598 ~~~~~~~~~~~l~g~~~g~~g~~~~--~~l~~~~-~~~~~~Vl~lDEid~l~~--------~~~~~Ll~~le~g~~~~~~ 666 (848)
+.+... ..|.|..+. ..+++.+ +...+.||||||+|.+.. ++.+.|...++.|.+
T Consensus 243 ~~l~ag----------~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g~l---- 308 (857)
T PRK10865 243 GALVAG----------AKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGEL---- 308 (857)
T ss_pred hhhhhc----------cchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcCCC----
Confidence 654211 124444332 2233333 334578999999998852 478999999988653
Q ss_pred CceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhh--cChhhhhccCeEEEcCCCCHHH
Q 003094 667 GRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQY--FRPEFLNRLDEMIVFRQLTKLE 744 (848)
Q Consensus 667 g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~ll~R~d~~i~f~~l~~~e 744 (848)
++|.+|+... .+.+ .+++|.+||+ .|.+..++.++
T Consensus 309 ---------~~IgaTt~~e---------------------------------~r~~~~~d~al~rRf~-~i~v~eP~~~~ 345 (857)
T PRK10865 309 ---------HCVGATTLDE---------------------------------YRQYIEKDAALERRFQ-KVFVAEPSVED 345 (857)
T ss_pred ---------eEEEcCCCHH---------------------------------HHHHhhhcHHHHhhCC-EEEeCCCCHHH
Confidence 5788876322 1111 4799999995 56667778999
Q ss_pred HHHHHHHHHH
Q 003094 745 VKEIADIMLK 754 (848)
Q Consensus 745 l~~I~~~~l~ 754 (848)
...|++....
T Consensus 346 ~~~iL~~l~~ 355 (857)
T PRK10865 346 TIAILRGLKE 355 (857)
T ss_pred HHHHHHHHhh
Confidence 8888865543
No 338
>PRK05642 DNA replication initiation factor; Validated
Probab=99.18 E-value=2.8e-10 Score=118.34 Aligned_cols=164 Identities=18% Similarity=0.300 Sum_probs=110.5
Q ss_pred eEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhcccCCCCCCcccccccchhHHHHcCCCeEEEEcC
Q 003094 562 ASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDE 641 (848)
Q Consensus 562 ~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDE 641 (848)
.+++|+||+|+|||+|++++++.+...+...+.+++.++... ...+.+.++.. .+|+||+
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~------------------~~~~~~~~~~~--d~LiiDD 105 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR------------------GPELLDNLEQY--ELVCLDD 105 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh------------------hHHHHHhhhhC--CEEEEec
Confidence 358999999999999999999887555566677776665321 01233344444 3899999
Q ss_pred CCcCC--hHHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHH
Q 003094 642 IEKAH--PDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEEL 719 (848)
Q Consensus 642 id~l~--~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l 719 (848)
++... +..+..|+.++..-. ..+..+|+|++.....+
T Consensus 106 i~~~~~~~~~~~~Lf~l~n~~~----------~~g~~ilits~~~p~~l------------------------------- 144 (234)
T PRK05642 106 LDVIAGKADWEEALFHLFNRLR----------DSGRRLLLAASKSPREL------------------------------- 144 (234)
T ss_pred hhhhcCChHHHHHHHHHHHHHH----------hcCCEEEEeCCCCHHHc-------------------------------
Confidence 99774 455666777775311 01235777777444311
Q ss_pred HhhcChhhhhccC--eEEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHHH
Q 003094 720 KQYFRPEFLNRLD--EMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMR 797 (848)
Q Consensus 720 ~~~~~~~ll~R~d--~~i~f~~l~~~el~~I~~~~l~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~ 797 (848)
..+.|+|.+|+. .++.+.+++.+++..++...... .+ +.++++++++|+.+. ....|.+..+++.
T Consensus 145 -~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~-------~~--~~l~~ev~~~L~~~~---~~d~r~l~~~l~~ 211 (234)
T PRK05642 145 -PIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASR-------RG--LHLTDEVGHFILTRG---TRSMSALFDLLER 211 (234)
T ss_pred -CccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHH-------cC--CCCCHHHHHHHHHhc---CCCHHHHHHHHHH
Confidence 123589999994 56888999999999998754322 12 568999999999942 2345777777775
Q ss_pred HH
Q 003094 798 LL 799 (848)
Q Consensus 798 ~l 799 (848)
+.
T Consensus 212 l~ 213 (234)
T PRK05642 212 LD 213 (234)
T ss_pred HH
Confidence 54
No 339
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.18 E-value=1.9e-10 Score=130.06 Aligned_cols=176 Identities=15% Similarity=0.216 Sum_probs=116.9
Q ss_pred ceEEEeecCCcchHHHHHHHHHHHhcCC--CCceEEecccccccccchhcccCCCCCCcccccccchhHHHHcCCCeEEE
Q 003094 561 IASFIFSGPTGVGKSELAKALAAYYFGS--EEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVL 638 (848)
Q Consensus 561 ~~~lLl~Gp~GtGKT~lA~~la~~l~~~--~~~~i~i~~~~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~Vl~ 638 (848)
..+++|+||+|+|||+|++++++.+... +..++.+++.++..... ..+ .. .....+.+.++. ..+|+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~-~~~-~~-------~~~~~~~~~~~~--~dlLi 204 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFV-NAL-RN-------NKMEEFKEKYRS--VDLLL 204 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHH-HHH-Hc-------CCHHHHHHHHHh--CCEEE
Confidence 3458999999999999999999987543 46677788776643211 101 00 011223334443 35999
Q ss_pred EcCCCcCCh--HHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHH
Q 003094 639 FDEIEKAHP--DVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVT 716 (848)
Q Consensus 639 lDEid~l~~--~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 716 (848)
|||++.+.. ..++.|+.+++.-. . .+..+|+|+|.....+
T Consensus 205 iDDi~~l~~~~~~~~~l~~~~n~~~-~---------~~~~iiits~~~p~~l---------------------------- 246 (405)
T TIGR00362 205 IDDIQFLAGKERTQEEFFHTFNALH-E---------NGKQIVLTSDRPPKEL---------------------------- 246 (405)
T ss_pred EehhhhhcCCHHHHHHHHHHHHHHH-H---------CCCCEEEecCCCHHHH----------------------------
Confidence 999998754 35666666664311 0 1224677777443311
Q ss_pred HHHHhhcChhhhhccCe--EEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHH
Q 003094 717 EELKQYFRPEFLNRLDE--MIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRA 794 (848)
Q Consensus 717 ~~l~~~~~~~ll~R~d~--~i~f~~l~~~el~~I~~~~l~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~ 794 (848)
..+.+.+.+||.. ++.|.+++.+++..|+...+.. ..+.++++++++|++. + ..+.|.|..+
T Consensus 247 ----~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~---------~~~~l~~e~l~~ia~~-~--~~~~r~l~~~ 310 (405)
T TIGR00362 247 ----PGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEE---------EGLELPDEVLEFIAKN-I--RSNVRELEGA 310 (405)
T ss_pred ----hhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHH---------cCCCCCHHHHHHHHHh-c--CCCHHHHHHH
Confidence 1245788899953 7999999999999999877765 2356899999999984 2 3456888888
Q ss_pred HHHHHHH
Q 003094 795 IMRLLED 801 (848)
Q Consensus 795 i~~~l~~ 801 (848)
|.++...
T Consensus 311 l~~l~~~ 317 (405)
T TIGR00362 311 LNRLLAY 317 (405)
T ss_pred HHHHHHH
Confidence 8876543
No 340
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.17 E-value=2.1e-11 Score=120.91 Aligned_cols=135 Identities=20% Similarity=0.297 Sum_probs=73.5
Q ss_pred CCCCccCChHHHHHHHHHhccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeC----Ccccccccc
Q 003094 195 KLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDM----GLLVAGTKY 270 (848)
Q Consensus 195 ~ld~iiG~~~~~~~l~~~l~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~----~~l~~~~~~ 270 (848)
.|.+|+||+..++.+.-.... ..|+||+||||||||++|+.+...+..-...+.+.-..++.+.. ..+.....+
T Consensus 1 Df~dI~GQe~aKrAL~iAAaG--~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~~~~~~~~~~~Pf 78 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAAG--GHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGLGPDEGLIRQRPF 78 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHHC--C--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---S---EEEE---E
T ss_pred ChhhhcCcHHHHHHHHHHHcC--CCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccCCCCCceecCCCc
Confidence 378999999999988665553 57999999999999999999998876433222222111111110 000000000
Q ss_pred cch-HHHHHHHHH--------HHHHhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCC---------------ce
Q 003094 271 RGE-FEERLKKLM--------EEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARG---------------EL 326 (848)
Q Consensus 271 ~g~-~~~~l~~l~--------~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~---------------~v 326 (848)
+.- -......++ .++......|||+||+..+ ...+++.|+..++.+ ++
T Consensus 79 r~phhs~s~~~liGgg~~~~PGeislAh~GVLflDE~~ef--------~~~vld~Lr~ple~g~v~i~R~~~~~~~Pa~f 150 (206)
T PF01078_consen 79 RAPHHSASEAALIGGGRPPRPGEISLAHRGVLFLDELNEF--------DRSVLDALRQPLEDGEVTISRAGGSVTYPARF 150 (206)
T ss_dssp EEE-TT--HHHHHEEGGGEEE-CGGGGTTSEEEECETTTS---------HHHHHHHHHHHHHSBEEEEETTEEEEEB--E
T ss_pred ccCCCCcCHHHHhCCCcCCCcCHHHHhcCCEEEechhhhc--------CHHHHHHHHHHHHCCeEEEEECCceEEEeccc
Confidence 000 000011111 1223455679999999998 456899999999855 47
Q ss_pred EEEEeeChHHHHh
Q 003094 327 QCIGATTLDEYRK 339 (848)
Q Consensus 327 ~vI~atn~~~~~~ 339 (848)
++|+|+|+-+...
T Consensus 151 ~lv~a~NPcpCG~ 163 (206)
T PF01078_consen 151 LLVAAMNPCPCGY 163 (206)
T ss_dssp EEEEEE-S-----
T ss_pred EEEEEeccccccc
Confidence 9999999877643
No 341
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.16 E-value=6.4e-10 Score=125.74 Aligned_cols=174 Identities=19% Similarity=0.290 Sum_probs=115.8
Q ss_pred ceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhcccCCCCCCcccccccchhHHHHcCCCeEEEEc
Q 003094 561 IASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFD 640 (848)
Q Consensus 561 ~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~Vl~lD 640 (848)
..+++|+||+|+|||+|++++++.+...+..++.+++..+.... ... +.. + ....+....+ ...||+||
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~-~~~-l~~-----~--~~~~f~~~~~--~~dvLiID 209 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHL-VSA-IRS-----G--EMQRFRQFYR--NVDALFIE 209 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHH-HHH-Hhc-----c--hHHHHHHHcc--cCCEEEEc
Confidence 34689999999999999999999886556777777766554321 110 100 0 0011222222 34599999
Q ss_pred CCCcCCh--HHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHH
Q 003094 641 EIEKAHP--DVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEE 718 (848)
Q Consensus 641 Eid~l~~--~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 718 (848)
|++.+.. ..++.|..++..-. . .+..+|+|||.....+
T Consensus 210 Diq~l~~k~~~qeelf~l~N~l~-~---------~~k~IIlts~~~p~~l------------------------------ 249 (445)
T PRK12422 210 DIEVFSGKGATQEEFFHTFNSLH-T---------EGKLIVISSTCAPQDL------------------------------ 249 (445)
T ss_pred chhhhcCChhhHHHHHHHHHHHH-H---------CCCcEEEecCCCHHHH------------------------------
Confidence 9999854 45666666554211 0 1125777876433211
Q ss_pred HHhhcChhhhhccC--eEEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHH
Q 003094 719 LKQYFRPEFLNRLD--EMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIM 796 (848)
Q Consensus 719 l~~~~~~~ll~R~d--~~i~f~~l~~~el~~I~~~~l~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~ 796 (848)
..+.+.+.+||. .++.+.|++.+++..|+...+.. ..+.++++++++|+.. + ..+.|.|..++.
T Consensus 250 --~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~---------~~~~l~~evl~~la~~-~--~~dir~L~g~l~ 315 (445)
T PRK12422 250 --KAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEA---------LSIRIEETALDFLIEA-L--SSNVKSLLHALT 315 (445)
T ss_pred --hhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHH---------cCCCCCHHHHHHHHHh-c--CCCHHHHHHHHH
Confidence 125688999994 58999999999999999877654 2356899999999984 2 256799999998
Q ss_pred HHH
Q 003094 797 RLL 799 (848)
Q Consensus 797 ~~l 799 (848)
.++
T Consensus 316 ~l~ 318 (445)
T PRK12422 316 LLA 318 (445)
T ss_pred HHH
Confidence 875
No 342
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.16 E-value=2.4e-10 Score=130.87 Aligned_cols=176 Identities=15% Similarity=0.231 Sum_probs=114.9
Q ss_pred CceEEEeecCCcchHHHHHHHHHHHhcCC--CCceEEecccccccccchhcccCCCCCCcccccccchhHHHHcCCCeEE
Q 003094 560 PIASFIFSGPTGVGKSELAKALAAYYFGS--EEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVV 637 (848)
Q Consensus 560 p~~~lLl~Gp~GtGKT~lA~~la~~l~~~--~~~~i~i~~~~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~Vl 637 (848)
...+++|+||+|+|||+|++++++.+... +..++.+++.++.... ...+ .. .....+.+.++. ..+|
T Consensus 147 ~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~-~~~~-~~-------~~~~~~~~~~~~--~dlL 215 (450)
T PRK00149 147 AYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDF-VNAL-RN-------NTMEEFKEKYRS--VDVL 215 (450)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHH-HHHH-Hc-------CcHHHHHHHHhc--CCEE
Confidence 33468999999999999999999988543 4567777877664321 1111 00 011223334443 4599
Q ss_pred EEcCCCcCCh--HHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHH
Q 003094 638 LFDEIEKAHP--DVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLV 715 (848)
Q Consensus 638 ~lDEid~l~~--~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~ 715 (848)
+|||++.+.. ..+..|+.+++.-. . .+..+|+|+|.....+
T Consensus 216 iiDDi~~l~~~~~~~~~l~~~~n~l~-~---------~~~~iiits~~~p~~l--------------------------- 258 (450)
T PRK00149 216 LIDDIQFLAGKERTQEEFFHTFNALH-E---------AGKQIVLTSDRPPKEL--------------------------- 258 (450)
T ss_pred EEehhhhhcCCHHHHHHHHHHHHHHH-H---------CCCcEEEECCCCHHHH---------------------------
Confidence 9999998743 34555555554311 0 1113667776443211
Q ss_pred HHHHHhhcChhhhhccC--eEEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHH
Q 003094 716 TEELKQYFRPEFLNRLD--EMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRR 793 (848)
Q Consensus 716 ~~~l~~~~~~~ll~R~d--~~i~f~~l~~~el~~I~~~~l~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~ 793 (848)
..+.+.+.+||. .++.|.+++.+++..|+...+.. ..+.++++++++|++.. ..+.|.|..
T Consensus 259 -----~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~---------~~~~l~~e~l~~ia~~~---~~~~R~l~~ 321 (450)
T PRK00149 259 -----PGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEE---------EGIDLPDEVLEFIAKNI---TSNVRELEG 321 (450)
T ss_pred -----HHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHH---------cCCCCCHHHHHHHHcCc---CCCHHHHHH
Confidence 114578899995 47999999999999999877764 23569999999999852 245688877
Q ss_pred HHHHHHH
Q 003094 794 AIMRLLE 800 (848)
Q Consensus 794 ~i~~~l~ 800 (848)
+|.++..
T Consensus 322 ~l~~l~~ 328 (450)
T PRK00149 322 ALNRLIA 328 (450)
T ss_pred HHHHHHH
Confidence 7776654
No 343
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.16 E-value=4.4e-10 Score=123.55 Aligned_cols=153 Identities=25% Similarity=0.277 Sum_probs=110.9
Q ss_pred CCccCChHHHHHHHHHhc-cCCCCC-cEEECCCCCcHHHHHHHHHHHhhCCCCCCCC--------------CCceEEEEe
Q 003094 197 DPVVGRQPQIERVVQILG-RRTKNN-PCLIGEPGVGKTAIAEGLAQRIASGDVPDTI--------------EGKKVITLD 260 (848)
Q Consensus 197 d~iiG~~~~~~~l~~~l~-~~~~~~-iLL~GppGtGKT~la~~la~~l~~~~~~~~l--------------~~~~v~~~~ 260 (848)
++++|.++.+.++..... ....+| +||+||||+|||++|.++|+.+.+....... ....+++++
T Consensus 1 ~~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~ 80 (325)
T COG0470 1 DELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELN 80 (325)
T ss_pred CCcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEec
Confidence 357788888888777766 455777 8999999999999999999999754322111 134678887
Q ss_pred CCcccccccccchHHHHHHHHHHHHHh----CCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhc--CCceEEEEeeCh
Q 003094 261 MGLLVAGTKYRGEFEERLKKLMEEIKQ----SDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLA--RGELQCIGATTL 334 (848)
Q Consensus 261 ~~~l~~~~~~~g~~~~~l~~l~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~--~~~v~vI~atn~ 334 (848)
.++..... -....++.+.+.... ++..|++|||+|.+. .++++.++..++ .....+|.+||.
T Consensus 81 ~s~~~~~~----i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt--------~~A~nallk~lEep~~~~~~il~~n~ 148 (325)
T COG0470 81 PSDLRKID----IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLT--------EDAANALLKTLEEPPKNTRFILITND 148 (325)
T ss_pred ccccCCCc----chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHh--------HHHHHHHHHHhccCCCCeEEEEEcCC
Confidence 76554211 233445555444432 346799999999994 468999999988 566888999996
Q ss_pred HHHHhhhhcChhhhcccCCCcCCCCCHHHHHH
Q 003094 335 DEYRKHIEKDPALERRFQPVKVPEPSVDETIQ 366 (848)
Q Consensus 335 ~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~ 366 (848)
+. .+-+.+.+||..+.|++|+......
T Consensus 149 ~~-----~il~tI~SRc~~i~f~~~~~~~~i~ 175 (325)
T COG0470 149 PS-----KILPTIRSRCQRIRFKPPSRLEAIA 175 (325)
T ss_pred hh-----hccchhhhcceeeecCCchHHHHHH
Confidence 66 6788999999999999866554433
No 344
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.15 E-value=2e-09 Score=109.01 Aligned_cols=182 Identities=21% Similarity=0.271 Sum_probs=121.4
Q ss_pred hccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhcc
Q 003094 530 HKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 609 (848)
Q Consensus 530 ~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l 609 (848)
.+.++|-+..++.|.+..++...|. |..++||+|+.|||||++++++...+...+..+|.++-..+..
T Consensus 26 l~~L~Gie~Qk~~l~~Nt~~Fl~G~-----pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~~------- 93 (249)
T PF05673_consen 26 LDDLIGIERQKEALIENTEQFLQGL-----PANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLGD------- 93 (249)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHcCC-----CCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhcc-------
Confidence 3467888899999988888776553 4467999999999999999999999877777777766544421
Q ss_pred cCCCCCCcccccccchhHHHHcCC-CeEEEEcCCCcC-ChHHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCchh
Q 003094 610 IGSPPGYVGYTEGGQLTEAVRRRP-YTVVLFDEIEKA-HPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSV 687 (848)
Q Consensus 610 ~g~~~g~~g~~~~~~l~~~~~~~~-~~Vl~lDEid~l-~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~ 687 (848)
-..+.+.++..+ .-|||+|++--= ...-...|..+||.|-- ..+.|++|.+|||.-.-+
T Consensus 94 ------------l~~l~~~l~~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle-------~~P~NvliyATSNRRHLv 154 (249)
T PF05673_consen 94 ------------LPELLDLLRDRPYKFILFCDDLSFEEGDTEYKALKSVLEGGLE-------ARPDNVLIYATSNRRHLV 154 (249)
T ss_pred ------------HHHHHHHHhcCCCCEEEEecCCCCCCCcHHHHHHHHHhcCccc-------cCCCcEEEEEecchhhcc
Confidence 133455566444 569999986632 34456777888876542 245799999999953321
Q ss_pred hhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHHHHHHH
Q 003094 688 IEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKE 755 (848)
Q Consensus 688 i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~~~l~~ 755 (848)
-+.-..+-+. .++.. ...+.+++ . -.|.+||.-.+.|.+++.++..+|++..+.+
T Consensus 155 ~E~~~d~~~~-----~~~ei--h~~d~~eE----k--lSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~ 209 (249)
T PF05673_consen 155 PESFSDREDI-----QDDEI--HPSDTIEE----K--LSLSDRFGLWLSFYPPDQEEYLAIVRHYAER 209 (249)
T ss_pred chhhhhccCC-----Ccccc--CcchHHHH----H--HhHHHhCCcEEEecCCCHHHHHHHHHHHHHH
Confidence 1110000000 00000 01111222 2 3578999999999999999999999988865
No 345
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.15 E-value=3.6e-10 Score=123.56 Aligned_cols=154 Identities=19% Similarity=0.214 Sum_probs=111.6
Q ss_pred CCCccC-ChHHHHHHHHHhccCCCCCc-EEECCCCCcHHHHHHHHHHHhhCCCCCCC--------------CCCceEEEE
Q 003094 196 LDPVVG-RQPQIERVVQILGRRTKNNP-CLIGEPGVGKTAIAEGLAQRIASGDVPDT--------------IEGKKVITL 259 (848)
Q Consensus 196 ld~iiG-~~~~~~~l~~~l~~~~~~~i-LL~GppGtGKT~la~~la~~l~~~~~~~~--------------l~~~~v~~~ 259 (848)
+++++| ++..++.+...+..+...|. ||+||+|+||+++|+.+++.+.+...... .....+..+
T Consensus 4 ~~~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i 83 (329)
T PRK08058 4 WEQLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLV 83 (329)
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEe
Confidence 567888 88899999999988887886 89999999999999999999876431110 011223333
Q ss_pred eCCcccccccccchHHHHHHHHHHHHH----hCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcC--CceEEEEeeC
Q 003094 260 DMGLLVAGTKYRGEFEERLKKLMEEIK----QSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR--GELQCIGATT 333 (848)
Q Consensus 260 ~~~~l~~~~~~~g~~~~~l~~l~~~~~----~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~atn 333 (848)
... +.. -..+.++.+.+.+. .++..|++|||+|.+. ...+|.|++.+|. +.+.+|.+|+
T Consensus 84 ~~~----~~~---i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~--------~~a~NaLLK~LEEPp~~~~~Il~t~ 148 (329)
T PRK08058 84 APD----GQS---IKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMT--------ASAANSLLKFLEEPSGGTTAILLTE 148 (329)
T ss_pred ccc----ccc---CCHHHHHHHHHHHhhCCcccCceEEEeehHhhhC--------HHHHHHHHHHhcCCCCCceEEEEeC
Confidence 221 111 11234555555443 2445699999999994 4588999999984 6677887877
Q ss_pred hHHHHhhhhcChhhhcccCCCcCCCCCHHHHHHHHH
Q 003094 334 LDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILK 369 (848)
Q Consensus 334 ~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~Il~ 369 (848)
... .+.|.++||+..++|++|+.++..+++.
T Consensus 149 ~~~-----~ll~TIrSRc~~i~~~~~~~~~~~~~L~ 179 (329)
T PRK08058 149 NKH-----QILPTILSRCQVVEFRPLPPESLIQRLQ 179 (329)
T ss_pred ChH-----hCcHHHHhhceeeeCCCCCHHHHHHHHH
Confidence 665 6889999999999999999998866665
No 346
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.14 E-value=1.1e-09 Score=124.36 Aligned_cols=186 Identities=16% Similarity=0.197 Sum_probs=109.8
Q ss_pred ccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccc---cch-
Q 003094 531 KRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMER---HTV- 606 (848)
Q Consensus 531 ~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~---~~~- 606 (848)
..++||..+++.+.-++. +..+++|+||||+|||++++.|+..+.... .=..+++..+..- ...
T Consensus 191 ~~v~Gq~~~~~al~laa~-----------~G~~llliG~~GsGKTtLak~L~gllpp~~-g~e~le~~~i~s~~g~~~~~ 258 (506)
T PRK09862 191 SDVIGQEQGKRGLEITAA-----------GGHNLLLIGPPGTGKTMLASRINGLLPDLS-NEEALESAAILSLVNAESVQ 258 (506)
T ss_pred EEEECcHHHHhhhheecc-----------CCcEEEEECCCCCcHHHHHHHHhccCCCCC-CcEEEecchhhhhhcccccc
Confidence 467888877655432221 114699999999999999999998762111 1112232222110 000
Q ss_pred ----hcccCCCC------CCcccccccchhHHHHcCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEc--CCCceeecCC
Q 003094 607 ----SKLIGSPP------GYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTD--SKGRTVDFKN 674 (848)
Q Consensus 607 ----~~l~g~~~------g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~--~~g~~v~~~~ 674 (848)
.+-|.+|. +.+|... ..-.+.+..++++|||+||++.+++.+++.|++.||+|.++. .++......+
T Consensus 259 ~~~~~rPfr~ph~~~s~~~l~GGg~-~~~pG~l~~A~gGvLfLDEi~e~~~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~ 337 (506)
T PRK09862 259 KQWRQRPFRSPHHSASLTAMVGGGA-IPGPGEISLAHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRAKITYPAR 337 (506)
T ss_pred CCcCCCCccCCCccchHHHHhCCCc-eehhhHhhhccCCEEecCCchhCCHHHHHHHHHHHHcCcEEEecCCcceeccCC
Confidence 00010000 0111100 122356778899999999999999999999999999999853 3344445679
Q ss_pred eEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHH
Q 003094 675 TLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLE 744 (848)
Q Consensus 675 ~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~e 744 (848)
+.+|+|+|... +|+.-+.. -.+... ....-...++.++++|||-.+.+++++.++
T Consensus 338 f~lIAa~NP~p---------cG~~~~~~-c~c~~~-----~~~~Y~~~ls~plLDRfdL~v~v~~~~~~~ 392 (506)
T PRK09862 338 FQLVAAMNPSP---------TGHYQGNH-NRCTPE-----QTLRYLNRLSGPFLDRFDLSLEIPLPPPGI 392 (506)
T ss_pred EEEEEeecCcc---------ceecCCCC-CCcCHH-----HHHHHHhhCCHhHHhhccEEEEeCCCCHHH
Confidence 99999999532 22110000 000000 011223458899999999999999886543
No 347
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=99.14 E-value=3.2e-10 Score=122.07 Aligned_cols=207 Identities=21% Similarity=0.265 Sum_probs=125.9
Q ss_pred HhhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccch-
Q 003094 528 TLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTV- 606 (848)
Q Consensus 528 ~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~- 606 (848)
..+..++||+.....|.-..... .++.+|+.|+.|||||+++|+||..|- ....+ .+|.--.+.+..
T Consensus 14 ~pf~aivGqd~lk~aL~l~av~P---------~iggvLI~G~kGtaKSt~~Rala~LLp--~~~~V-~gc~f~cdP~~P~ 81 (423)
T COG1239 14 LPFTAIVGQDPLKLALGLNAVDP---------QIGGALIAGEKGTAKSTLARALADLLP--EIEVV-IGCPFNCDPDDPE 81 (423)
T ss_pred cchhhhcCchHHHHHHhhhhccc---------ccceeEEecCCCccHHHHHHHHHHhCC--cccee-cCCCCCCCCCChh
Confidence 45778999998877665442222 134689999999999999999999982 12221 133111111000
Q ss_pred ----------------------hcccCCCCCCc-----cc-------ccc--cchhHHHHcCCCeEEEEcCCCcCChHHH
Q 003094 607 ----------------------SKLIGSPPGYV-----GY-------TEG--GQLTEAVRRRPYTVVLFDEIEKAHPDVF 650 (848)
Q Consensus 607 ----------------------~~l~g~~~g~~-----g~-------~~~--~~l~~~~~~~~~~Vl~lDEid~l~~~~~ 650 (848)
..+++.|.+-+ |. .++ ..-.+.+-+++.+||+|||+..++..++
T Consensus 82 ~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d~lv 161 (423)
T COG1239 82 EMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDDHLV 161 (423)
T ss_pred hhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccccHHHH
Confidence 01222222111 10 000 1112445568889999999999999999
Q ss_pred HHHHhhhcCc-EEEcCCCceeecC-CeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhh
Q 003094 651 NMMLQILEDG-RLTDSKGRTVDFK-NTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFL 728 (848)
Q Consensus 651 ~~Ll~~le~g-~~~~~~g~~v~~~-~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll 728 (848)
+.||+++++| ....-+|..+.++ ++++|.|+|.... -++|.|+
T Consensus 162 d~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeG-----------------------------------eLrpqLl 206 (423)
T COG1239 162 DALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEG-----------------------------------ELRPQLL 206 (423)
T ss_pred HHHHHHHHhCCceeeeCceeeccCccEEEEeecCcccc-----------------------------------ccchhhH
Confidence 9999999998 3333456656554 9999999995432 3578888
Q ss_pred hccCeEEEcCCC-CHHHHHHHHHHHHH----------HHHH-------HH--hcC-CCeEeecHHHHHHHHHcc
Q 003094 729 NRLDEMIVFRQL-TKLEVKEIADIMLK----------EVFD-------RL--KTK-DIELQVTERFRERVVEEG 781 (848)
Q Consensus 729 ~R~d~~i~f~~l-~~~el~~I~~~~l~----------~~~~-------~~--~~~-~~~l~i~~~a~~~l~~~~ 781 (848)
+||...|...++ +.++..+|+++.+. .+.. +. ... -..+.+++.+..++++.+
T Consensus 207 DRfg~~v~~~~~~~~~~rv~Ii~r~~~f~~~Pe~f~~~~~~~~~~lR~~ii~ar~~l~~V~l~~~~~~~ia~~~ 280 (423)
T COG1239 207 DRFGLEVDTHYPLDLEERVEIIRRRLAFEAVPEAFLEKYADAQRALRARIIAARSLLSEVELDDDAETKIAELC 280 (423)
T ss_pred hhhcceeeccCCCCHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHH
Confidence 998776666554 44666666644433 1111 11 011 125567888888877753
No 348
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=99.14 E-value=5e-11 Score=122.70 Aligned_cols=161 Identities=21% Similarity=0.275 Sum_probs=110.9
Q ss_pred HHHHhhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCC-Cc--eEEecccccc
Q 003094 525 MEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSE-EA--MIRLDMSEFM 601 (848)
Q Consensus 525 l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~-~~--~i~i~~~~~~ 601 (848)
.++....++++|++.+..+.+... .++.| |+|||||||||||+...+.|..+++.. .. +..+|.++-.
T Consensus 35 yrP~~l~dv~~~~ei~st~~~~~~-------~~~lP--h~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~r 105 (360)
T KOG0990|consen 35 YRPPFLGIVIKQEPIWSTENRYSG-------MPGLP--HLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDDR 105 (360)
T ss_pred CCCchhhhHhcCCchhhHHHHhcc-------CCCCC--cccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCcc
Confidence 344455678899998887776632 22333 799999999999999999999997631 11 1122222211
Q ss_pred cccchhcccCCCCCCcccccccchhHHHH-------cCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecCC
Q 003094 602 ERHTVSKLIGSPPGYVGYTEGGQLTEAVR-------RRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKN 674 (848)
Q Consensus 602 ~~~~~~~l~g~~~g~~g~~~~~~l~~~~~-------~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~ 674 (848)
+.+.+. . .-.++...+ .+....+++||+|.+..++||+|.+.++... .|
T Consensus 106 gid~vr-----------~--qi~~fast~~~~~fst~~~fKlvILDEADaMT~~AQnALRRviek~t-----------~n 161 (360)
T KOG0990|consen 106 GIDPVR-----------Q--QIHLFASTQQPTTYSTHAAFKLVILDEADAMTRDAQNALRRVIEKYT-----------AN 161 (360)
T ss_pred CCcchH-----------H--HHHHHHhhccceeccccCceeEEEecchhHhhHHHHHHHHHHHHHhc-----------cc
Confidence 111000 0 011122222 2367899999999999999999999887643 68
Q ss_pred eEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHHHHHH
Q 003094 675 TLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLK 754 (848)
Q Consensus 675 ~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~~~l~ 754 (848)
++|+..+|.... ..|++.+|| .-+.|.|++..+....+.+.++
T Consensus 162 ~rF~ii~n~~~k------------------------------------i~pa~qsRc-trfrf~pl~~~~~~~r~shi~e 204 (360)
T KOG0990|consen 162 TRFATISNPPQK------------------------------------IHPAQQSRC-TRFRFAPLTMAQQTERQSHIRE 204 (360)
T ss_pred eEEEEeccChhh------------------------------------cCchhhccc-ccCCCCCCChhhhhhHHHHHHh
Confidence 889888885543 458899999 7899999999988888887776
Q ss_pred H
Q 003094 755 E 755 (848)
Q Consensus 755 ~ 755 (848)
.
T Consensus 205 ~ 205 (360)
T KOG0990|consen 205 S 205 (360)
T ss_pred c
Confidence 4
No 349
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.14 E-value=3.6e-10 Score=116.13 Aligned_cols=174 Identities=20% Similarity=0.286 Sum_probs=110.7
Q ss_pred eEEEeecCCcchHHHHHHHHHHHhcC--CCCceEEecccccccccchhcccCCCCCCcccccccchhHHHHcCCCeEEEE
Q 003094 562 ASFIFSGPTGVGKSELAKALAAYYFG--SEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLF 639 (848)
Q Consensus 562 ~~lLl~Gp~GtGKT~lA~~la~~l~~--~~~~~i~i~~~~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~Vl~l 639 (848)
.++++|||+|+|||.|.+++++.+.. .+..++.+++.++....... + .......+.+.++ ...+|+|
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~-~--------~~~~~~~~~~~~~--~~DlL~i 103 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADA-L--------RDGEIEEFKDRLR--SADLLII 103 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHH-H--------HTTSHHHHHHHHC--TSSEEEE
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHH-H--------Hcccchhhhhhhh--cCCEEEE
Confidence 45899999999999999999988642 46678888887775431111 0 0011122333344 3459999
Q ss_pred cCCCcCChH--HHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHH
Q 003094 640 DEIEKAHPD--VFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTE 717 (848)
Q Consensus 640 DEid~l~~~--~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 717 (848)
|+++.+... .+..|..+++.-. -.+..+|+|++.....+
T Consensus 104 DDi~~l~~~~~~q~~lf~l~n~~~----------~~~k~li~ts~~~P~~l----------------------------- 144 (219)
T PF00308_consen 104 DDIQFLAGKQRTQEELFHLFNRLI----------ESGKQLILTSDRPPSEL----------------------------- 144 (219)
T ss_dssp ETGGGGTTHHHHHHHHHHHHHHHH----------HTTSEEEEEESS-TTTT-----------------------------
T ss_pred ecchhhcCchHHHHHHHHHHHHHH----------hhCCeEEEEeCCCCccc-----------------------------
Confidence 999998653 5777777775421 01235777876544322
Q ss_pred HHHhhcChhhhhccCe--EEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHH
Q 003094 718 ELKQYFRPEFLNRLDE--MIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAI 795 (848)
Q Consensus 718 ~l~~~~~~~ll~R~d~--~i~f~~l~~~el~~I~~~~l~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i 795 (848)
..+.|+|.+|+.. ++.+.+++.++..+|+.....+ ..+.++++++++|+.. + +.+.|.|..+|
T Consensus 145 ---~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~---------~~~~l~~~v~~~l~~~-~--~~~~r~L~~~l 209 (219)
T PF00308_consen 145 ---SGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKE---------RGIELPEEVIEYLARR-F--RRDVRELEGAL 209 (219)
T ss_dssp ---TTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHH---------TT--S-HHHHHHHHHH-T--TSSHHHHHHHH
T ss_pred ---cccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHH---------hCCCCcHHHHHHHHHh-h--cCCHHHHHHHH
Confidence 1256889999944 7899999999999999877765 3456999999999995 2 23568888777
Q ss_pred HHHHH
Q 003094 796 MRLLE 800 (848)
Q Consensus 796 ~~~l~ 800 (848)
.++..
T Consensus 210 ~~l~~ 214 (219)
T PF00308_consen 210 NRLDA 214 (219)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76554
No 350
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.13 E-value=1.9e-09 Score=120.07 Aligned_cols=213 Identities=15% Similarity=0.101 Sum_probs=122.0
Q ss_pred CccCChHHHHHHHHHhccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccccccccchH-HH
Q 003094 198 PVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEF-EE 276 (848)
Q Consensus 198 ~iiG~~~~~~~l~~~l~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~~~~g~~-~~ 276 (848)
.++|+++.++.+...+. ...|+||.||||||||++|++|++.+.... .+..+.+.-. ......|.. -.
T Consensus 21 ~i~gre~vI~lll~aal--ag~hVLL~GpPGTGKT~LAraLa~~~~~~~--------~F~~~~~~ft-tp~DLfG~l~i~ 89 (498)
T PRK13531 21 GLYERSHAIRLCLLAAL--SGESVFLLGPPGIAKSLIARRLKFAFQNAR--------AFEYLMTRFS-TPEEVFGPLSIQ 89 (498)
T ss_pred hccCcHHHHHHHHHHHc--cCCCEEEECCCChhHHHHHHHHHHHhcccC--------cceeeeeeec-CcHHhcCcHHHh
Confidence 48999999999987775 569999999999999999999999874321 1222221100 001111110 00
Q ss_pred HH--HHHHHHHHhC---CCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCCc------------eEEEEeeChHHHHh
Q 003094 277 RL--KKLMEEIKQS---DEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGE------------LQCIGATTLDEYRK 339 (848)
Q Consensus 277 ~l--~~l~~~~~~~---~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~~------------v~vI~atn~~~~~~ 339 (848)
.. ..-+.....+ ..-+||+|||+.+. ...++.|...++.+. .+++++||+.+-
T Consensus 90 ~~~~~g~f~r~~~G~L~~A~lLfLDEI~ras--------p~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE-- 159 (498)
T PRK13531 90 ALKDEGRYQRLTSGYLPEAEIVFLDEIWKAG--------PAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPE-- 159 (498)
T ss_pred hhhhcCchhhhcCCccccccEEeecccccCC--------HHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcc--
Confidence 00 0011111111 11289999999874 447888888884222 344555564331
Q ss_pred hhhcChhhhcccC-CCcCCCCCH-HHHHHHHHHHHHH--H-----------------hhhhcCCCChHHHHHHHhhhhcc
Q 003094 340 HIEKDPALERRFQ-PVKVPEPSV-DETIQILKGLRER--Y-----------------EIHHKLRYTDEALVSAAQLSYQY 398 (848)
Q Consensus 340 ~~~~d~al~~Rf~-~i~~~~p~~-~e~~~Il~~~~~~--~-----------------~~~~~~~~s~~~l~~l~~~s~~~ 398 (848)
.-...+++..||. .+.+|+|+. ++-.+++...... . .....+.+++..++++.++....
T Consensus 160 ~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~v~eyI~~L~~~l 239 (498)
T PRK13531 160 ADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDHVFELIFQLRQQL 239 (498)
T ss_pred cCCchHHhHhhEEEEEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHHHHHHHHHHHHHH
Confidence 0012358999996 789999974 5556777642110 0 01234556777777777665421
Q ss_pred --cc--cCCChhhHHHHHHHHhhHHHHh--hcCCchHHH
Q 003094 399 --IS--DRFLPDKAIDLIDEAGSRVRLR--HAQLPEEAR 431 (848)
Q Consensus 399 --~~--~~~~p~~a~~ll~~a~~~~~~~--~~~~~~~~~ 431 (848)
.. ....|+..+.++.-+.+.+.+. ....|..+.
T Consensus 240 r~~r~~~~~SpR~~~~l~~~akA~A~l~GR~~V~p~Dv~ 278 (498)
T PRK13531 240 DALPNAPYVSDRRWKKAIRLLQASAFFSGRDAIAPIDLI 278 (498)
T ss_pred hcCCCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCHHHHH
Confidence 11 1246777788777776666653 344444443
No 351
>PRK04132 replication factor C small subunit; Provisional
Probab=99.13 E-value=4.7e-10 Score=133.60 Aligned_cols=161 Identities=16% Similarity=0.219 Sum_probs=125.9
Q ss_pred CcEEEC--CCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccccccccchHHHHHHHHHHHHHhC------CCe
Q 003094 220 NPCLIG--EPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQS------DEI 291 (848)
Q Consensus 220 ~iLL~G--ppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~~~~g~~~~~l~~l~~~~~~~------~~~ 291 (848)
+-+..| |++.||||+|+++|+.+..... +.+++++|.++... . ..++.+++.+... ...
T Consensus 566 ~~~~~G~lPh~lGKTT~A~ala~~l~g~~~-----~~~~lElNASd~rg----i----d~IR~iIk~~a~~~~~~~~~~K 632 (846)
T PRK04132 566 HNFIGGNLPTVLHNTTAALALARELFGENW-----RHNFLELNASDERG----I----NVIREKVKEFARTKPIGGASFK 632 (846)
T ss_pred hhhhcCCCCCcccHHHHHHHHHHhhhcccc-----cCeEEEEeCCCccc----H----HHHHHHHHHHHhcCCcCCCCCE
Confidence 346678 9999999999999999843211 35789999876431 1 2344444443321 236
Q ss_pred EEEEcccchhhhCCCCCchHHHHHHHhhhhc--CCceEEEEeeChHHHHhhhhcChhhhcccCCCcCCCCCHHHHHHHHH
Q 003094 292 ILFIDEVHTLIGAGAAEGAIDAANILKPSLA--RGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILK 369 (848)
Q Consensus 292 IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~--~~~v~vI~atn~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~Il~ 369 (848)
|+||||+|.|. .+.++.|++.++ .+.+.+|++||... .+.+++.|||+.+.|++|+.++....++
T Consensus 633 VvIIDEaD~Lt--------~~AQnALLk~lEep~~~~~FILi~N~~~-----kIi~tIrSRC~~i~F~~ls~~~i~~~L~ 699 (846)
T PRK04132 633 IIFLDEADALT--------QDAQQALRRTMEMFSSNVRFILSCNYSS-----KIIEPIQSRCAIFRFRPLRDEDIAKRLR 699 (846)
T ss_pred EEEEECcccCC--------HHHHHHHHHHhhCCCCCeEEEEEeCChh-----hCchHHhhhceEEeCCCCCHHHHHHHHH
Confidence 99999999994 458999999999 47899999999887 6889999999999999999999999998
Q ss_pred HHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCChhhHHHHHHHHh
Q 003094 370 GLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAG 416 (848)
Q Consensus 370 ~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~p~~a~~ll~~a~ 416 (848)
.++++ +++.++++++..++..+.|- +++|+.+|+.++
T Consensus 700 ~I~~~----Egi~i~~e~L~~Ia~~s~GD------lR~AIn~Lq~~~ 736 (846)
T PRK04132 700 YIAEN----EGLELTEEGLQAILYIAEGD------MRRAINILQAAA 736 (846)
T ss_pred HHHHh----cCCCCCHHHHHHHHHHcCCC------HHHHHHHHHHHH
Confidence 88763 56788999999999998886 445888887664
No 352
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.13 E-value=4.8e-10 Score=107.23 Aligned_cols=150 Identities=28% Similarity=0.387 Sum_probs=96.7
Q ss_pred ChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhcccCCCC
Q 003094 535 GQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPP 614 (848)
Q Consensus 535 gq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~ 614 (848)
|++..+..+...+... +..+++++||||||||++++.+++.+...+.+++.+++.............+..
T Consensus 2 ~~~~~~~~i~~~~~~~---------~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~- 71 (151)
T cd00009 2 GQEEAIEALREALELP---------PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHF- 71 (151)
T ss_pred chHHHHHHHHHHHhCC---------CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhh-
Confidence 5556666665555421 123589999999999999999999986667788888887764432221111100
Q ss_pred CCcccccccchhHHHHcCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCchhhhccCcc
Q 003094 615 GYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRR 694 (848)
Q Consensus 615 g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~i~~~~~~ 694 (848)
...............+|+|||++.+++.....+++.++...... ....++.+|+++|....
T Consensus 72 ------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~ii~~~~~~~~-------- 132 (151)
T cd00009 72 ------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLR-----IDRENVRVIGATNRPLL-------- 132 (151)
T ss_pred ------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCcee-----ccCCCeEEEEecCcccc--------
Confidence 00111122334567899999999998888888888887743210 12356788888874331
Q ss_pred cccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCC
Q 003094 695 IGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQ 739 (848)
Q Consensus 695 ~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~ 739 (848)
..+.+.+.+|++..+.++|
T Consensus 133 --------------------------~~~~~~~~~r~~~~i~~~~ 151 (151)
T cd00009 133 --------------------------GDLDRALYDRLDIRIVIPL 151 (151)
T ss_pred --------------------------CCcChhHHhhhccEeecCC
Confidence 1245778899987777764
No 353
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=6.4e-10 Score=122.23 Aligned_cols=197 Identities=19% Similarity=0.263 Sum_probs=129.4
Q ss_pred hccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCC--CceEEecccccccccchh
Q 003094 530 HKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSE--EAMIRLDMSEFMERHTVS 607 (848)
Q Consensus 530 ~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~--~~~i~i~~~~~~~~~~~~ 607 (848)
-+.+.+.+.-++++...+...-.+.. |. +++++||||||||.+++.+.+.+.... ...+.+||-.+.....+.
T Consensus 16 P~~l~~Re~ei~~l~~~l~~~~~~~~----p~-n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~ 90 (366)
T COG1474 16 PEELPHREEEINQLASFLAPALRGER----PS-NIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVL 90 (366)
T ss_pred cccccccHHHHHHHHHHHHHHhcCCC----Cc-cEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHH
Confidence 34577888888888888776654432 22 489999999999999999999984332 227899999886654433
Q ss_pred c-c---cCCCCCCcccccc---cchhHHHHc-CCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecCCeEEEE
Q 003094 608 K-L---IGSPPGYVGYTEG---GQLTEAVRR-RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIM 679 (848)
Q Consensus 608 ~-l---~g~~~g~~g~~~~---~~l~~~~~~-~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~ 679 (848)
. + ++..| ..|.... ..+.+.+.. ...-||+|||+|.+-..-.+.|+.++...... ..++.+|+
T Consensus 91 ~~i~~~~~~~p-~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~--------~~~v~vi~ 161 (366)
T COG1474 91 SKILNKLGKVP-LTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGEN--------KVKVSIIA 161 (366)
T ss_pred HHHHHHcCCCC-CCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhcccc--------ceeEEEEE
Confidence 2 2 22222 2232221 233444443 45569999999999766446666666543211 25677888
Q ss_pred ecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCe-EEEcCCCCHHHHHHHHHHHHHHHHH
Q 003094 680 TSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDE-MIVFRQLTKLEVKEIADIMLKEVFD 758 (848)
Q Consensus 680 tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~-~i~f~~l~~~el~~I~~~~l~~~~~ 758 (848)
.+|.- .+...++|-+.+++.. .|.|+||+.+++..|+....+.-.
T Consensus 162 i~n~~---------------------------------~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~- 207 (366)
T COG1474 162 VSNDD---------------------------------KFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGF- 207 (366)
T ss_pred EeccH---------------------------------HHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhc-
Confidence 88721 1233466777777733 499999999999999977766421
Q ss_pred HHhcCCCeEeecHHHHHHHHHc
Q 003094 759 RLKTKDIELQVTERFRERVVEE 780 (848)
Q Consensus 759 ~~~~~~~~l~i~~~a~~~l~~~ 780 (848)
..-.+++++++.++..
T Consensus 208 ------~~~~~~~~vl~lia~~ 223 (366)
T COG1474 208 ------SAGVIDDDVLKLIAAL 223 (366)
T ss_pred ------cCCCcCccHHHHHHHH
Confidence 1223788999888875
No 354
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.11 E-value=2.4e-09 Score=116.32 Aligned_cols=166 Identities=20% Similarity=0.235 Sum_probs=110.6
Q ss_pred CCCCC-cEEECCCCCcHHHHHHHHHHHhhCCCCCC--------------CCCCceEEEEeCCcccccccccchHHHHHHH
Q 003094 216 RTKNN-PCLIGEPGVGKTAIAEGLAQRIASGDVPD--------------TIEGKKVITLDMGLLVAGTKYRGEFEERLKK 280 (848)
Q Consensus 216 ~~~~~-iLL~GppGtGKT~la~~la~~l~~~~~~~--------------~l~~~~v~~~~~~~l~~~~~~~g~~~~~l~~ 280 (848)
....| +||+||+|+|||++|+.+|+.+.+..... ...+.+++.+....- ++. -..+.++.
T Consensus 19 ~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~---~~~--i~id~iR~ 93 (328)
T PRK05707 19 GRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA---DKT--IKVDQVRE 93 (328)
T ss_pred CCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC---CCC--CCHHHHHH
Confidence 44444 78999999999999999999998643110 112234555533211 010 11244555
Q ss_pred HHHHHH----hCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcC--CceEEEEeeChHHHHhhhhcChhhhcccCCC
Q 003094 281 LMEEIK----QSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR--GELQCIGATTLDEYRKHIEKDPALERRFQPV 354 (848)
Q Consensus 281 l~~~~~----~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~atn~~~~~~~~~~d~al~~Rf~~i 354 (848)
+.+.+. .++..|++||++|.|. ....|.|++.+|. +++.+|.+|+.++ .+.|.++|||+.+
T Consensus 94 l~~~~~~~~~~~~~kv~iI~~a~~m~--------~~aaNaLLK~LEEPp~~~~fiL~t~~~~-----~ll~TI~SRc~~~ 160 (328)
T PRK05707 94 LVSFVVQTAQLGGRKVVLIEPAEAMN--------RNAANALLKSLEEPSGDTVLLLISHQPS-----RLLPTIKSRCQQQ 160 (328)
T ss_pred HHHHHhhccccCCCeEEEECChhhCC--------HHHHHHHHHHHhCCCCCeEEEEEECChh-----hCcHHHHhhceee
Confidence 555543 2456688999999994 4589999999984 5788888888877 6899999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCChhhHHHHHH
Q 003094 355 KVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLID 413 (848)
Q Consensus 355 ~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~p~~a~~ll~ 413 (848)
.|++|+.++..+.+..... ..+++....++.++.|- |.+|..+++
T Consensus 161 ~~~~~~~~~~~~~L~~~~~--------~~~~~~~~~~l~la~Gs------p~~A~~l~~ 205 (328)
T PRK05707 161 ACPLPSNEESLQWLQQALP--------ESDERERIELLTLAGGS------PLRALQLHE 205 (328)
T ss_pred eCCCcCHHHHHHHHHHhcc--------cCChHHHHHHHHHcCCC------HHHHHHHHC
Confidence 9999999988777764221 23444455556665543 445655543
No 355
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.10 E-value=2.3e-09 Score=108.92 Aligned_cols=112 Identities=23% Similarity=0.328 Sum_probs=86.2
Q ss_pred CeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHH
Q 003094 634 YTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKS 713 (848)
Q Consensus 634 ~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~ 713 (848)
++||||||++.++-+.+..|.+.+|+--. .++|++||.+-..+.... ....
T Consensus 289 pGVLFIDEvHMLDIEcFsFlNrAlE~d~~------------PiiimaTNrgit~iRGTn-----------~~Sp------ 339 (454)
T KOG2680|consen 289 PGVLFIDEVHMLDIECFSFLNRALENDMA------------PIIIMATNRGITRIRGTN-----------YRSP------ 339 (454)
T ss_pred cceEEEeeehhhhhHHHHHHHHHhhhccC------------cEEEEEcCCceEEeecCC-----------CCCC------
Confidence 67999999999999999999999998442 388999998766443200 0000
Q ss_pred HHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHH
Q 003094 714 LVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRR 793 (848)
Q Consensus 714 ~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~~~l~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~ 793 (848)
.-++-+|++|+ -+|...||+.+|+++|++..+.+ ..+.+++++++.|...+. +..||-
T Consensus 340 -------hGiP~D~lDR~-lII~t~py~~~d~~~IL~iRc~E---------Edv~m~~~A~d~Lt~i~~-----~tsLRY 397 (454)
T KOG2680|consen 340 -------HGIPIDLLDRM-LIISTQPYTEEDIKKILRIRCQE---------EDVEMNPDALDLLTKIGE-----ATSLRY 397 (454)
T ss_pred -------CCCcHHHhhhh-heeecccCcHHHHHHHHHhhhhh---------hccccCHHHHHHHHHhhh-----hhhHHH
Confidence 12678999999 89999999999999999876655 557789999999998532 355766
Q ss_pred HHH
Q 003094 794 AIM 796 (848)
Q Consensus 794 ~i~ 796 (848)
+++
T Consensus 398 ai~ 400 (454)
T KOG2680|consen 398 AIH 400 (454)
T ss_pred HHH
Confidence 666
No 356
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.10 E-value=2.6e-09 Score=116.55 Aligned_cols=172 Identities=19% Similarity=0.209 Sum_probs=107.9
Q ss_pred ccCChHHHHHHHHHhcc--CCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccccccccchHHH
Q 003094 199 VVGRQPQIERVVQILGR--RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEE 276 (848)
Q Consensus 199 iiG~~~~~~~l~~~l~~--~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~~~~g~~~~ 276 (848)
++|....++++.+.+.. ....++||+|++||||+++|++|...... .+.+++.+||+.+... ..+
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r-------~~~pfv~vnc~~~~~~-----~l~- 67 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSKR-------WQGPLVKLNCAALSEN-----LLD- 67 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhcCc-------cCCCeEEEeCCCCChH-----HHH-
Confidence 46788777777666554 55678999999999999999999876532 2567999999865421 111
Q ss_pred HHHHHHH---------------HHHhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCC-------------ceEE
Q 003094 277 RLKKLME---------------EIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARG-------------ELQC 328 (848)
Q Consensus 277 ~l~~l~~---------------~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~-------------~v~v 328 (848)
..+|. ......+.+|||||++.|. .+.+..|..+++.+ .+.+
T Consensus 68 --~~lfG~~~g~~~ga~~~~~G~~~~a~gGtL~Ldei~~L~--------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~Ri 137 (329)
T TIGR02974 68 --SELFGHEAGAFTGAQKRHQGRFERADGGTLFLDELATAS--------LLVQEKLLRVIEYGEFERVGGSQTLQVDVRL 137 (329)
T ss_pred --HHHhccccccccCcccccCCchhhCCCCEEEeCChHhCC--------HHHHHHHHHHHHcCcEEecCCCceeccceEE
Confidence 11111 1223446799999999994 45777887777643 3688
Q ss_pred EEeeChHHH--HhhhhcChhhhcccCCCcCCCCCHHHHH----HHHHHHHHHHhhhhc----CCCChHHHHHHHh
Q 003094 329 IGATTLDEY--RKHIEKDPALERRFQPVKVPEPSVDETI----QILKGLRERYEIHHK----LRYTDEALVSAAQ 393 (848)
Q Consensus 329 I~atn~~~~--~~~~~~d~al~~Rf~~i~~~~p~~~e~~----~Il~~~~~~~~~~~~----~~~s~~~l~~l~~ 393 (848)
|++|+..-. ...-...+.|..||..+.|..|+..+|. .+++.++.++....+ ..++++++..+..
T Consensus 138 I~at~~~l~~~~~~g~fr~dL~~rl~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~ 212 (329)
T TIGR02974 138 VCATNADLPALAAEGRFRADLLDRLAFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLE 212 (329)
T ss_pred EEechhhHHHHhhcCchHHHHHHHhcchhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHh
Confidence 998876531 1111345777888875555555555444 444444444332221 2456666655554
No 357
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.09 E-value=1.1e-09 Score=120.92 Aligned_cols=154 Identities=22% Similarity=0.339 Sum_probs=95.1
Q ss_pred CCCccCChHHHHHHHHHhccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEe----CCccccccccc
Q 003094 196 LDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLD----MGLLVAGTKYR 271 (848)
Q Consensus 196 ld~iiG~~~~~~~l~~~l~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~----~~~l~~~~~~~ 271 (848)
++++++.+..++.+...+.. ..|++|+||||||||++|+.+|..+.....+. ...++.+. ..+++.|....
T Consensus 174 l~d~~i~e~~le~l~~~L~~--~~~iil~GppGtGKT~lA~~la~~l~~~~~~~---~v~~VtFHpsySYeDFI~G~rP~ 248 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTI--KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQ---RVNMVQFHQSYSYEDFIQGYRPN 248 (459)
T ss_pred hhcccCCHHHHHHHHHHHhc--CCCEEEECCCCCCHHHHHHHHHHHhcCCcccc---eeeEEeecccccHHHHhcccCCC
Confidence 56788889999999888774 68999999999999999999999885422111 11222222 22333222211
Q ss_pred c-hH---HHHHHHHHHHHHh--CCCeEEEEcccchhhhCCCCCchHHHHHHHh--------------------hhhcCCc
Q 003094 272 G-EF---EERLKKLMEEIKQ--SDEIILFIDEVHTLIGAGAAEGAIDAANILK--------------------PSLARGE 325 (848)
Q Consensus 272 g-~~---~~~l~~l~~~~~~--~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~--------------------~~l~~~~ 325 (848)
+ .+ ...+..+...+.. ..+.+|||||+++...+.-.. ++..+|. .+.-..+
T Consensus 249 ~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFG---el~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~N 325 (459)
T PRK11331 249 GVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFG---EVMMLMEHDKRGENWSVPLTYSENDEERFYVPEN 325 (459)
T ss_pred CCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhh---hhhhhccccccccccceeeeccccccccccCCCC
Confidence 1 00 0123344455543 357899999999864221000 0000000 1112456
Q ss_pred eEEEEeeChHHHHhhhhcChhhhcccCCCcCCC
Q 003094 326 LQCIGATTLDEYRKHIEKDPALERRFQPVKVPE 358 (848)
Q Consensus 326 v~vI~atn~~~~~~~~~~d~al~~Rf~~i~~~~ 358 (848)
+.||||+|..+ +....+|.||+|||..|++.+
T Consensus 326 l~IIgTMNt~D-rs~~~lD~AlrRRF~fi~i~p 357 (459)
T PRK11331 326 VYIIGLMNTAD-RSLAVVDYALRRRFSFIDIEP 357 (459)
T ss_pred eEEEEecCccc-cchhhccHHHHhhhheEEecC
Confidence 99999999987 344468999999999888765
No 358
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.09 E-value=6.8e-10 Score=108.53 Aligned_cols=142 Identities=18% Similarity=0.220 Sum_probs=97.6
Q ss_pred CChHHHHHHHHHhccCCCCC-cEEECCCCCcHHHHHHHHHHHhhCCCCCC-------------CCCCceEEEEeCCcccc
Q 003094 201 GRQPQIERVVQILGRRTKNN-PCLIGEPGVGKTAIAEGLAQRIASGDVPD-------------TIEGKKVITLDMGLLVA 266 (848)
Q Consensus 201 G~~~~~~~l~~~l~~~~~~~-iLL~GppGtGKT~la~~la~~l~~~~~~~-------------~l~~~~v~~~~~~~l~~ 266 (848)
|+++.++.|...+.....+| +||+||+|+||+++|..+|+.+....... ......++.++......
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 80 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK 80 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc
Confidence 78899999999999988888 58999999999999999999998754331 12345566665433210
Q ss_pred cccccchHHHHHHHHHHHHH----hCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcC--CceEEEEeeChHHHHhh
Q 003094 267 GTKYRGEFEERLKKLMEEIK----QSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR--GELQCIGATTLDEYRKH 340 (848)
Q Consensus 267 ~~~~~g~~~~~l~~l~~~~~----~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~atn~~~~~~~ 340 (848)
.-..+.++.+.+.+. .++.-|++|||+|.|. .++++.|++.||. ..+.+|.+|+..+
T Consensus 81 -----~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~--------~~a~NaLLK~LEepp~~~~fiL~t~~~~---- 143 (162)
T PF13177_consen 81 -----SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLT--------EEAQNALLKTLEEPPENTYFILITNNPS---- 143 (162)
T ss_dssp -----SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS---------HHHHHHHHHHHHSTTTTEEEEEEES-GG----
T ss_pred -----hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhh--------HHHHHHHHHHhcCCCCCEEEEEEECChH----
Confidence 011244555555543 2456799999999994 5689999999984 4688888888776
Q ss_pred hhcChhhhcccCCCcCCCCC
Q 003094 341 IEKDPALERRFQPVKVPEPS 360 (848)
Q Consensus 341 ~~~d~al~~Rf~~i~~~~p~ 360 (848)
.+-|.++||+..+.|++++
T Consensus 144 -~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 144 -KILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp -GS-HHHHTTSEEEEE----
T ss_pred -HChHHHHhhceEEecCCCC
Confidence 6899999999988887653
No 359
>PF10431 ClpB_D2-small: C-terminal, D2-small domain, of ClpB protein ; InterPro: IPR019489 Most Clp ATPases form complexes with peptidase subunits and are involved in protein degradation, though some, such as ClpB, do not associate with peptidases and are involved in protein disaggregation []. This entry represents the C-terminal domain of Clp ATPases, often referred to as the D2-small domain, which forms a mixed alpha-beta structure. Compared with the adjacent AAA D1-small domain (IPR003959 from INTERPRO) it lacks the long coiled-coil insertion, and instead of helix C4 contains a beta-strand (e3) that is part of a three stranded beta-pleated sheet. In Thermophilus the whole protein forms a hexamer with the D1-small and D2-small domains located on the outside of the hexamer, with the long coiled-coil being exposed on the surface. The D2-small domain is essential for oligomerisation, forming a tight interface with the D2-large domain of a neighbouring subunit, thereby providing enough binding energy to stabilise the functional assembly [].; PDB: 3HWS_A 3HTE_F 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 3PXI_A 1R6B_X ....
Probab=99.09 E-value=3.8e-10 Score=96.64 Aligned_cols=81 Identities=46% Similarity=0.779 Sum_probs=75.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHHHHHHHHHHHHHHccccCCCCEEE
Q 003094 740 LTKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVI 819 (848)
Q Consensus 740 l~~~el~~I~~~~l~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~l~~~l~~~~l~~~~~~~~~~~ 819 (848)
|+.+++.+|++..+.++.+++..+|+.+.++++++++|++.+|++.+|||++++.|++.+.++|++.++.+.+.+|++|.
T Consensus 1 L~~~~l~~I~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~i~~~la~~il~~~~~~g~~v~ 80 (81)
T PF10431_consen 1 LSEEDLEKIADLQLKKLNERLKEKGIELEFDDAVVDYLAEKGYDPEYGARPLRRIIEREIEPPLADAILSGKIKEGDTVR 80 (81)
T ss_dssp --HHHHHHHHHSHHHHHHHHHHHTTEEEEE-HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHHHHHHHSCSCTTCEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCeEEecHHHHHHHHHhCcccCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcCEee
Confidence 57899999999999999999988999999999999999999999999999999999999999999999999999999987
Q ss_pred E
Q 003094 820 V 820 (848)
Q Consensus 820 v 820 (848)
|
T Consensus 81 v 81 (81)
T PF10431_consen 81 V 81 (81)
T ss_dssp E
T ss_pred C
Confidence 6
No 360
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.09 E-value=2.3e-09 Score=106.29 Aligned_cols=168 Identities=26% Similarity=0.343 Sum_probs=124.7
Q ss_pred CCCCCccCChHHHHHHHH----HhccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCccccccc
Q 003094 194 GKLDPVVGRQPQIERVVQ----ILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTK 269 (848)
Q Consensus 194 ~~ld~iiG~~~~~~~l~~----~l~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~~ 269 (848)
-.+.+++|.+.+.+.|.+ ++...+.+|+||+|..|||||++++++..++... +.++++++-.++.
T Consensus 57 i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~-------glrLVEV~k~dl~---- 125 (287)
T COG2607 57 IDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADE-------GLRLVEVDKEDLA---- 125 (287)
T ss_pred cCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhc-------CCeEEEEcHHHHh----
Confidence 456778999988887654 5667888999999999999999999999998763 6678888766554
Q ss_pred ccchHHHHHHHHHHHHHh-CCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhc------CCceEEEEeeChHHHHhh-h
Q 003094 270 YRGEFEERLKKLMEEIKQ-SDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLA------RGELQCIGATTLDEYRKH-I 341 (848)
Q Consensus 270 ~~g~~~~~l~~l~~~~~~-~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~------~~~v~vI~atn~~~~~~~-~ 341 (848)
.+-.+++.++. ....|||+||+-- +.+.+....|+..|+ ..+|++.+|+|+...... +
T Consensus 126 -------~Lp~l~~~Lr~~~~kFIlFcDDLSF-------e~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRRHLl~e~~ 191 (287)
T COG2607 126 -------TLPDLVELLRARPEKFILFCDDLSF-------EEGDDAYKALKSALEGGVEGRPANVLFYATSNRRHLLPEDM 191 (287)
T ss_pred -------hHHHHHHHHhcCCceEEEEecCCCC-------CCCchHHHHHHHHhcCCcccCCCeEEEEEecCCcccccHhh
Confidence 24456666664 4578999998743 223456778888887 356888899887554321 1
Q ss_pred --------hcC--------hhhhcccC-CCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHH
Q 003094 342 --------EKD--------PALERRFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVS 390 (848)
Q Consensus 342 --------~~d--------~al~~Rf~-~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~ 390 (848)
+++ -++..||. -+.|++++.++-..|+..+++ +.++.++++.+..
T Consensus 192 ~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~----~~~l~~~~e~l~~ 253 (287)
T COG2607 192 KDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAK----HFGLDISDEELHA 253 (287)
T ss_pred hhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHH----HcCCCCCHHHHHH
Confidence 111 23556997 899999999999999999887 4678888766654
No 361
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.08 E-value=8.2e-10 Score=105.63 Aligned_cols=144 Identities=27% Similarity=0.382 Sum_probs=93.2
Q ss_pred cCChHHHHHHHHHhccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccccccccchHHHH-H
Q 003094 200 VGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEER-L 278 (848)
Q Consensus 200 iG~~~~~~~l~~~l~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~~~~g~~~~~-l 278 (848)
+|++..+..+...+......+++++||||+|||++++.+++.+.. .+.+++.+++................ .
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 73 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFR-------PGAPFLYLNASDLLEGLVVAELFGHFLV 73 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhc-------CCCCeEEEehhhhhhhhHHHHHhhhhhH
Confidence 467888899988888877889999999999999999999998852 24567888876554321111100000 1
Q ss_pred HHHHHHHHhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhc----CCceEEEEeeChHHHHhhhhcChhhhcccC-C
Q 003094 279 KKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLA----RGELQCIGATTLDEYRKHIEKDPALERRFQ-P 353 (848)
Q Consensus 279 ~~l~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~----~~~v~vI~atn~~~~~~~~~~d~al~~Rf~-~ 353 (848)
...........+.+|+|||++.+... ........+..... ..++.+|++++.... ..+++.+.+||. .
T Consensus 74 ~~~~~~~~~~~~~~lilDe~~~~~~~----~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~---~~~~~~~~~r~~~~ 146 (151)
T cd00009 74 RLLFELAEKAKPGVLFIDEIDSLSRG----AQNALLRVLETLNDLRIDRENVRVIGATNRPLL---GDLDRALYDRLDIR 146 (151)
T ss_pred hHHHHhhccCCCeEEEEeChhhhhHH----HHHHHHHHHHhcCceeccCCCeEEEEecCcccc---CCcChhHHhhhccE
Confidence 11122223456789999999987211 11223344444433 367889999887763 246788889994 6
Q ss_pred CcCC
Q 003094 354 VKVP 357 (848)
Q Consensus 354 i~~~ 357 (848)
+.++
T Consensus 147 i~~~ 150 (151)
T cd00009 147 IVIP 150 (151)
T ss_pred eecC
Confidence 6654
No 362
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.08 E-value=2.2e-09 Score=127.25 Aligned_cols=162 Identities=25% Similarity=0.348 Sum_probs=104.3
Q ss_pred CCCccCChHHHHHHHHHhccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCC---------CCC----------------
Q 003094 196 LDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDV---------PDT---------------- 250 (848)
Q Consensus 196 ld~iiG~~~~~~~l~~~l~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~---------~~~---------------- 250 (848)
|..|+|++..+..+.-.+-.+...++||.|++|||||++|++|++.+..-.+ |+.
T Consensus 3 f~~ivGq~~~~~al~~~av~~~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~~~~ 82 (633)
T TIGR02442 3 FTAIVGQEDLKLALLLNAVDPRIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYRPSE 82 (633)
T ss_pred cchhcChHHHHHHHHHHhhCCCCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhcccccc
Confidence 5679999999988877666666678999999999999999999998731000 000
Q ss_pred CCCceEEEEeCCcccccccccch--HHHHHHH---H--HHHHHhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcC
Q 003094 251 IEGKKVITLDMGLLVAGTKYRGE--FEERLKK---L--MEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR 323 (848)
Q Consensus 251 l~~~~v~~~~~~~l~~~~~~~g~--~~~~l~~---l--~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~ 323 (848)
....+++.+.++.... ...|. .+..+.. . ...+......||||||++.+. ...++.|...++.
T Consensus 83 ~~~~pfv~~p~~~t~~--~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~--------~~~q~~Ll~~le~ 152 (633)
T TIGR02442 83 QRPVPFVNLPLGATED--RVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLD--------DHLVDVLLDAAAM 152 (633)
T ss_pred cCCCCeeeCCCCCcHH--HcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCC--------HHHHHHHHHHHhc
Confidence 0123455444332211 01111 1111100 0 011112345699999999994 4578888888875
Q ss_pred C---------------ceEEEEeeChHHHHhhhhcChhhhcccC-CCcCCCCC-HHHHHHHHHHH
Q 003094 324 G---------------ELQCIGATTLDEYRKHIEKDPALERRFQ-PVKVPEPS-VDETIQILKGL 371 (848)
Q Consensus 324 ~---------------~v~vI~atn~~~~~~~~~~d~al~~Rf~-~i~~~~p~-~~e~~~Il~~~ 371 (848)
+ .+.+|+++|+.+. .+.++|..||. .|.++.+. .+++.++++..
T Consensus 153 g~~~v~r~g~~~~~~~~~~lIat~np~eg----~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~ 213 (633)
T TIGR02442 153 GVNRVEREGLSVSHPARFVLIGTMNPEEG----DLRPQLLDRFGLCVDVAAPRDPEERVEIIRRR 213 (633)
T ss_pred CCEEEEECCceeeecCCeEEEEecCCCCC----CCCHHHHhhcceEEEccCCCchHHHHHHHHHH
Confidence 4 3788999887542 57899999997 67777664 57777777653
No 363
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.08 E-value=6.6e-10 Score=125.27 Aligned_cols=184 Identities=20% Similarity=0.265 Sum_probs=130.0
Q ss_pred hhhhhhhhcCCCCCccCChHHHHHHHHHhc----------------------------------cCCCCCcEEECCCCCc
Q 003094 185 TNLTKLAEEGKLDPVVGRQPQIERVVQILG----------------------------------RRTKNNPCLIGEPGVG 230 (848)
Q Consensus 185 ~~l~~~~~~~~ld~iiG~~~~~~~l~~~l~----------------------------------~~~~~~iLL~GppGtG 230 (848)
.-|+++++|..|-+++|-+..-+.+..+|+ ++..+-+||+||||-|
T Consensus 259 kLWVdky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlG 338 (877)
T KOG1969|consen 259 KLWVDKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLG 338 (877)
T ss_pred ceeecccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCC
Confidence 368888888888888888877766655542 2333446799999999
Q ss_pred HHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccccccccchHHHHHHHHHHH--HH--hCCCeEEEEcccchhhhCCC
Q 003094 231 KTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEE--IK--QSDEIILFIDEVHTLIGAGA 306 (848)
Q Consensus 231 KT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~~~~g~~~~~l~~l~~~--~~--~~~~~IL~IDEid~l~~~~~ 306 (848)
|||||+.+|+.. |..|++++.++-.++. .+.+++...... +- ...|..|+|||||--.
T Consensus 339 KTTLAHViAkqa----------GYsVvEINASDeRt~~----~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~---- 400 (877)
T KOG1969|consen 339 KTTLAHVIAKQA----------GYSVVEINASDERTAP----MVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP---- 400 (877)
T ss_pred hhHHHHHHHHhc----------CceEEEecccccccHH----HHHHHHHHHHhhccccccCCCcceEEEecccCCc----
Confidence 999999999988 7889999988765432 223333322211 11 2568999999998643
Q ss_pred CCchHHHHHHHhhhhcC---------C--------------ceEEEEeeChHHHHhhhhcChhhhc--cc-CCCcCCCCC
Q 003094 307 AEGAIDAANILKPSLAR---------G--------------ELQCIGATTLDEYRKHIEKDPALER--RF-QPVKVPEPS 360 (848)
Q Consensus 307 ~~~~~~~~~~L~~~l~~---------~--------------~v~vI~atn~~~~~~~~~~d~al~~--Rf-~~i~~~~p~ 360 (848)
..++++++.++.. + .-.||++||.. .-|+|+- -| ..|.|.+|+
T Consensus 401 ----~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdL-------YaPaLR~Lr~~A~ii~f~~p~ 469 (877)
T KOG1969|consen 401 ----RAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDL-------YAPALRPLRPFAEIIAFVPPS 469 (877)
T ss_pred ----HHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCc-------cchhhhhcccceEEEEecCCC
Confidence 3356666666541 0 13678888753 3567755 34 378999999
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhccccc
Q 003094 361 VDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISD 401 (848)
Q Consensus 361 ~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~ 401 (848)
..-+.+-|+.++. ..++.....++..|++++...+..
T Consensus 470 ~s~Lv~RL~~IC~----rE~mr~d~~aL~~L~el~~~DIRs 506 (877)
T KOG1969|consen 470 QSRLVERLNEICH----RENMRADSKALNALCELTQNDIRS 506 (877)
T ss_pred hhHHHHHHHHHHh----hhcCCCCHHHHHHHHHHhcchHHH
Confidence 9988888887776 468888889999999998876654
No 364
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=2.4e-09 Score=110.03 Aligned_cols=168 Identities=24% Similarity=0.349 Sum_probs=109.6
Q ss_pred CCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccccccccc-hHHHHHHHHHHHH----HhCCCe
Q 003094 217 TKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRG-EFEERLKKLMEEI----KQSDEI 291 (848)
Q Consensus 217 ~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~~~~g-~~~~~l~~l~~~~----~~~~~~ 291 (848)
.++|+||+||+|+|||.+|+.||+.+ +.++.-.|+..+... .|+| +.|.-+.+++..+ .+....
T Consensus 96 ~KSNILLiGPTGsGKTlLAqTLAk~L----------nVPFaiADATtLTEA-GYVGEDVENillkLlqaadydV~rAerG 164 (408)
T COG1219 96 SKSNILLIGPTGSGKTLLAQTLAKIL----------NVPFAIADATTLTEA-GYVGEDVENILLKLLQAADYDVERAERG 164 (408)
T ss_pred eeccEEEECCCCCcHHHHHHHHHHHh----------CCCeeeccccchhhc-cccchhHHHHHHHHHHHcccCHHHHhCC
Confidence 46899999999999999999999999 566777787777653 4666 4555566666554 244567
Q ss_pred EEEEcccchhhhCCCCC------chHHHHHHHhhhhcC-----------------------CceEEEEeeChHHHH----
Q 003094 292 ILFIDEVHTLIGAGAAE------GAIDAANILKPSLAR-----------------------GELQCIGATTLDEYR---- 338 (848)
Q Consensus 292 IL~IDEid~l~~~~~~~------~~~~~~~~L~~~l~~-----------------------~~v~vI~atn~~~~~---- 338 (848)
|+||||||.+.....+. ....++..|+.+++. .++.+|..+.-....
T Consensus 165 IIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGTvasVPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~ 244 (408)
T COG1219 165 IIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEFIQVDTSNILFICGGAFAGLEKIIK 244 (408)
T ss_pred eEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCceeccCCCCCCCCCccceEEEcccceeEEeccccccHHHHHH
Confidence 99999999998654221 234577888888761 113444322211110
Q ss_pred -----------------------------------hhhhcChhhhcccC-CCcCCCCCHHHHHHHHHH----HHHHHhh-
Q 003094 339 -----------------------------------KHIEKDPALERRFQ-PVKVPEPSVDETIQILKG----LRERYEI- 377 (848)
Q Consensus 339 -----------------------------------~~~~~d~al~~Rf~-~i~~~~p~~~e~~~Il~~----~~~~~~~- 377 (848)
-.+.+=|.|..|+. ...+...+.+++.+||.. +.++|..
T Consensus 245 ~R~~~~~iGF~a~~~~~~~~~~~~~~l~~vepeDLvkFGLIPEfIGRlPvia~L~~Lde~aLv~ILtePkNAlvKQYq~L 324 (408)
T COG1219 245 KRLGKKGIGFGAEVKSKSKKKEEGELLKQVEPEDLVKFGLIPEFIGRLPVIATLEELDEDALVQILTEPKNALVKQYQKL 324 (408)
T ss_pred HhccCCcccccccccchhhhhhHHHHHHhcChHHHHHcCCcHHHhcccceeeehhhcCHHHHHHHHhcccHHHHHHHHHH
Confidence 01223367777776 557888888888888764 4444432
Q ss_pred --hh--cCCCChHHHHHHHhhh
Q 003094 378 --HH--KLRYTDEALVSAAQLS 395 (848)
Q Consensus 378 --~~--~~~~s~~~l~~l~~~s 395 (848)
.. .+.++++++..+++.+
T Consensus 325 f~~d~V~L~F~~~AL~~IA~~A 346 (408)
T COG1219 325 FEMDGVELEFTEEALKAIAKKA 346 (408)
T ss_pred hcccCceEEEcHHHHHHHHHHH
Confidence 12 2346788888877654
No 365
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=99.07 E-value=5.4e-09 Score=113.89 Aligned_cols=178 Identities=17% Similarity=0.186 Sum_probs=121.5
Q ss_pred hHHHHHHHHHhccCCCCCc-EEECCCCCcHHHHHHHHHHHhhCCCCCC--------------CCCCceEEEEeCCccccc
Q 003094 203 QPQIERVVQILGRRTKNNP-CLIGEPGVGKTAIAEGLAQRIASGDVPD--------------TIEGKKVITLDMGLLVAG 267 (848)
Q Consensus 203 ~~~~~~l~~~l~~~~~~~i-LL~GppGtGKT~la~~la~~l~~~~~~~--------------~l~~~~v~~~~~~~l~~~ 267 (848)
+...+++.+.+......|. ||+||+|+||+++|..+|+.+.+..... ...+.+++.+....-
T Consensus 8 ~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~--- 84 (334)
T PRK07993 8 RPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKG--- 84 (334)
T ss_pred hHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccc---
Confidence 3556678888877666665 6899999999999999999997642211 123345555543210
Q ss_pred ccccchHHHHHHHHHHHHH----hCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhc--CCceEEEEeeChHHHHhhh
Q 003094 268 TKYRGEFEERLKKLMEEIK----QSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLA--RGELQCIGATTLDEYRKHI 341 (848)
Q Consensus 268 ~~~~g~~~~~l~~l~~~~~----~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~--~~~v~vI~atn~~~~~~~~ 341 (848)
.. .-..+.++.+.+.+. .++..|++||++|.|. ..+.|.|++.+| .++.++|.+|+.++
T Consensus 85 ~~--~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~--------~~AaNaLLKtLEEPp~~t~fiL~t~~~~----- 149 (334)
T PRK07993 85 KS--SLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLT--------DAAANALLKTLEEPPENTWFFLACREPA----- 149 (334)
T ss_pred cc--cCCHHHHHHHHHHHhhccccCCceEEEEcchHhhC--------HHHHHHHHHHhcCCCCCeEEEEEECChh-----
Confidence 00 011334555555443 3556799999999994 458999999998 45688888888777
Q ss_pred hcChhhhcccCCCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCChhhHHHHHH
Q 003094 342 EKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLID 413 (848)
Q Consensus 342 ~~d~al~~Rf~~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~p~~a~~ll~ 413 (848)
.+.|.++||++.+.|++|+.++..+.|.. ...++++....++.++.|- |.+|.+++.
T Consensus 150 ~lLpTIrSRCq~~~~~~~~~~~~~~~L~~---------~~~~~~~~a~~~~~la~G~------~~~Al~l~~ 206 (334)
T PRK07993 150 RLLATLRSRCRLHYLAPPPEQYALTWLSR---------EVTMSQDALLAALRLSAGA------PGAALALLQ 206 (334)
T ss_pred hChHHHHhccccccCCCCCHHHHHHHHHH---------ccCCCHHHHHHHHHHcCCC------HHHHHHHhc
Confidence 68999999999999999999887766652 1124555555666666553 445666554
No 366
>PHA02244 ATPase-like protein
Probab=99.07 E-value=8.9e-10 Score=118.46 Aligned_cols=139 Identities=22% Similarity=0.297 Sum_probs=89.1
Q ss_pred ccCChHHHHH----HHHHhccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCC----cccccccc
Q 003094 199 VVGRQPQIER----VVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMG----LLVAGTKY 270 (848)
Q Consensus 199 iiG~~~~~~~----l~~~l~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~----~l~~~~~~ 270 (848)
.+|..+.+.. +..++ ....+++|+||||||||++|+++|+.+ +.+++.++.. .+..-...
T Consensus 98 ~ig~sp~~~~~~~ri~r~l--~~~~PVLL~GppGtGKTtLA~aLA~~l----------g~pfv~In~l~d~~~L~G~i~~ 165 (383)
T PHA02244 98 KIASNPTFHYETADIAKIV--NANIPVFLKGGAGSGKNHIAEQIAEAL----------DLDFYFMNAIMDEFELKGFIDA 165 (383)
T ss_pred ccCCCHHHHHHHHHHHHHH--hcCCCEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEecChHHHhhcccccc
Confidence 4555554443 33333 345789999999999999999999987 4567766531 01000001
Q ss_pred cchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhc-------------CCceEEEEeeChHH-
Q 003094 271 RGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLA-------------RGELQCIGATTLDE- 336 (848)
Q Consensus 271 ~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~-------------~~~v~vI~atn~~~- 336 (848)
.+. ..-..++..+.. +.+|||||++.+.+ +++..|...++ ..++.+|+|+|+..
T Consensus 166 ~g~--~~dgpLl~A~~~--GgvLiLDEId~a~p--------~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~ 233 (383)
T PHA02244 166 NGK--FHETPFYEAFKK--GGLFFIDEIDASIP--------EALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGK 233 (383)
T ss_pred ccc--ccchHHHHHhhc--CCEEEEeCcCcCCH--------HHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCcc
Confidence 111 111234444443 45999999998843 35666666664 35689999999842
Q ss_pred -----HHhhhhcChhhhcccCCCcCCCCCH
Q 003094 337 -----YRKHIEKDPALERRFQPVKVPEPSV 361 (848)
Q Consensus 337 -----~~~~~~~d~al~~Rf~~i~~~~p~~ 361 (848)
|.....+++++++||..|+|+.|+.
T Consensus 234 G~~~~y~G~k~L~~AllDRFv~I~~dyp~~ 263 (383)
T PHA02244 234 GADHIYVARNKIDGATLDRFAPIEFDYDEK 263 (383)
T ss_pred CcccccCCCcccCHHHHhhcEEeeCCCCcH
Confidence 1123468999999999999999884
No 367
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=99.07 E-value=2.7e-09 Score=114.85 Aligned_cols=182 Identities=15% Similarity=0.167 Sum_probs=120.0
Q ss_pred ChHHHHHHHHHhccCCCCC-cEEECCCCCcHHHHHHHHHHHhhCCCCCC-----------CCCCceEEEEeCCccccccc
Q 003094 202 RQPQIERVVQILGRRTKNN-PCLIGEPGVGKTAIAEGLAQRIASGDVPD-----------TIEGKKVITLDMGLLVAGTK 269 (848)
Q Consensus 202 ~~~~~~~l~~~l~~~~~~~-iLL~GppGtGKT~la~~la~~l~~~~~~~-----------~l~~~~v~~~~~~~l~~~~~ 269 (848)
++...+++...+.....+| +||+||+|+||+++|..+|+.+.+..... .....++..+....-..+.+
T Consensus 9 ~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k 88 (319)
T PRK08769 9 QQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDK 88 (319)
T ss_pred HHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCccccc
Confidence 3456677888888777777 78999999999999999999998743111 11223444443111001111
Q ss_pred c-cchHHHHHHHHHHHHHh----CCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcC--CceEEEEeeChHHHHhhhh
Q 003094 270 Y-RGEFEERLKKLMEEIKQ----SDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR--GELQCIGATTLDEYRKHIE 342 (848)
Q Consensus 270 ~-~g~~~~~l~~l~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~atn~~~~~~~~~ 342 (848)
. ..-..+.++.+.+.+.. ++..|++||++|.|. ....|.|++.+|. +++++|.+|+.++ .
T Consensus 89 ~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~--------~~AaNaLLKtLEEPp~~~~fiL~~~~~~-----~ 155 (319)
T PRK08769 89 LRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAIN--------RAACNALLKTLEEPSPGRYLWLISAQPA-----R 155 (319)
T ss_pred ccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhC--------HHHHHHHHHHhhCCCCCCeEEEEECChh-----h
Confidence 0 01123456666555542 345799999999994 4589999999984 4677888888776 6
Q ss_pred cChhhhcccCCCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCChhhHHHHH
Q 003094 343 KDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLI 412 (848)
Q Consensus 343 ~d~al~~Rf~~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~p~~a~~ll 412 (848)
+.|.++|||+.+.|+.|+.++..+.|.. . .+++.....++.++.|- |..|..++
T Consensus 156 lLpTIrSRCq~i~~~~~~~~~~~~~L~~--------~--~~~~~~a~~~~~l~~G~------p~~A~~~~ 209 (319)
T PRK08769 156 LPATIRSRCQRLEFKLPPAHEALAWLLA--------Q--GVSERAAQEALDAARGH------PGLAAQWL 209 (319)
T ss_pred CchHHHhhheEeeCCCcCHHHHHHHHHH--------c--CCChHHHHHHHHHcCCC------HHHHHHHh
Confidence 8899999999999999999988776652 1 23444444555655543 44455554
No 368
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.07 E-value=3.4e-09 Score=124.17 Aligned_cols=178 Identities=22% Similarity=0.301 Sum_probs=116.2
Q ss_pred cCCCCCccCChHHHHHHHHHhcc--CCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccccccc
Q 003094 193 EGKLDPVVGRQPQIERVVQILGR--RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKY 270 (848)
Q Consensus 193 ~~~ld~iiG~~~~~~~l~~~l~~--~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~~~ 270 (848)
...++.++|....++++.+.+.. ....++||+|++||||+++|+.|.+.... .+.+++.+||..+...
T Consensus 192 ~~~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r-------~~~pfv~i~c~~~~~~--- 261 (534)
T TIGR01817 192 SGKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPR-------AKRPFVKVNCAALSET--- 261 (534)
T ss_pred cCccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCCC-------CCCCeEEeecCCCCHH---
Confidence 35788999999999988887654 56678999999999999999999986542 2567999999876321
Q ss_pred cchHHHHHHHHHH---------------HHHhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCC-----------
Q 003094 271 RGEFEERLKKLME---------------EIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARG----------- 324 (848)
Q Consensus 271 ~g~~~~~l~~l~~---------------~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~----------- 324 (848)
..+ ..+|. ......+.+|||||++.|. .+.+..|..+++.+
T Consensus 262 --~~~---~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~--------~~~Q~~Ll~~l~~~~~~~~~~~~~~ 328 (534)
T TIGR01817 262 --LLE---SELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEIS--------PAFQAKLLRVLQEGEFERVGGNRTL 328 (534)
T ss_pred --HHH---HHHcCCCCCccCCCCcCCCCcccccCCCeEEEechhhCC--------HHHHHHHHHHHhcCcEEECCCCceE
Confidence 011 11111 1122345699999999994 45777787777643
Q ss_pred --ceEEEEeeChHHH--HhhhhcChhhhcccCCCcCCCCCH----HHHHHHHHHHHHHHhhhh--cCCCChHHHHHHHh
Q 003094 325 --ELQCIGATTLDEY--RKHIEKDPALERRFQPVKVPEPSV----DETIQILKGLRERYEIHH--KLRYTDEALVSAAQ 393 (848)
Q Consensus 325 --~v~vI~atn~~~~--~~~~~~d~al~~Rf~~i~~~~p~~----~e~~~Il~~~~~~~~~~~--~~~~s~~~l~~l~~ 393 (848)
.+.+|++|+.... ...-...+.|..|+..+.+..|+. ++...+++.++.++.... ...++++++..+..
T Consensus 329 ~~~~riI~~s~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~ 407 (534)
T TIGR01817 329 KVDVRLVAATNRDLEEAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVLMS 407 (534)
T ss_pred eecEEEEEeCCCCHHHHHHcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHh
Confidence 3788888876432 111234567777887544444444 444555566555543222 14567777666655
No 369
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.06 E-value=9.3e-10 Score=124.82 Aligned_cols=175 Identities=18% Similarity=0.290 Sum_probs=110.8
Q ss_pred eEEEeecCCcchHHHHHHHHHHHhcC--CCCceEEecccccccccchhcccCCCCCCcccccccchhHHHHcCCCeEEEE
Q 003094 562 ASFIFSGPTGVGKSELAKALAAYYFG--SEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLF 639 (848)
Q Consensus 562 ~~lLl~Gp~GtGKT~lA~~la~~l~~--~~~~~i~i~~~~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~Vl~l 639 (848)
.+++||||+|+|||+|++++++.+.. .+..++.+++.++...... .+ .. .....+.+..+ ....+|+|
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~-~~-~~-------~~~~~f~~~~~-~~~dvLlI 200 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVD-SM-KE-------GKLNEFREKYR-KKVDVLLI 200 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHH-HH-hc-------ccHHHHHHHHH-hcCCEEEE
Confidence 35999999999999999999998743 2346677777665432111 00 00 00112222222 23569999
Q ss_pred cCCCcCC--hHHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHH
Q 003094 640 DEIEKAH--PDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTE 717 (848)
Q Consensus 640 DEid~l~--~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 717 (848)
||++.+. ...+..|+..+..-. + .+..+|+|++.....+
T Consensus 201 DDi~~l~~~~~~q~elf~~~n~l~--~--------~~k~iIitsd~~p~~l----------------------------- 241 (440)
T PRK14088 201 DDVQFLIGKTGVQTELFHTFNELH--D--------SGKQIVICSDREPQKL----------------------------- 241 (440)
T ss_pred echhhhcCcHHHHHHHHHHHHHHH--H--------cCCeEEEECCCCHHHH-----------------------------
Confidence 9999774 334555555543211 0 1124666765332211
Q ss_pred HHHhhcChhhhhccC--eEEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHH
Q 003094 718 ELKQYFRPEFLNRLD--EMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAI 795 (848)
Q Consensus 718 ~l~~~~~~~ll~R~d--~~i~f~~l~~~el~~I~~~~l~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i 795 (848)
..+.+.+.+||. .++.+.|++.+++..|+...+.. ..+.++++++++|++.. ..+.|.|..++
T Consensus 242 ---~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~---------~~~~l~~ev~~~Ia~~~---~~~~R~L~g~l 306 (440)
T PRK14088 242 ---SEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEI---------EHGELPEEVLNFVAENV---DDNLRRLRGAI 306 (440)
T ss_pred ---HHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHh---------cCCCCCHHHHHHHHhcc---ccCHHHHHHHH
Confidence 124577888883 37899999999999999776653 23568999999999842 24678898888
Q ss_pred HHHHH
Q 003094 796 MRLLE 800 (848)
Q Consensus 796 ~~~l~ 800 (848)
.++..
T Consensus 307 ~~l~~ 311 (440)
T PRK14088 307 IKLLV 311 (440)
T ss_pred HHHHH
Confidence 87654
No 370
>PRK06620 hypothetical protein; Validated
Probab=99.06 E-value=2.3e-09 Score=109.64 Aligned_cols=145 Identities=15% Similarity=0.231 Sum_probs=93.7
Q ss_pred eEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhcccCCCCCCcccccccchhHHHHcCCCeEEEEcC
Q 003094 562 ASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDE 641 (848)
Q Consensus 562 ~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDE 641 (848)
.+++||||||+|||++++++++.. +..++ ..... ..+..+ ...+|+|||
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~---~~~~~--~~~~~------------------------~~~~~~--~~d~lliDd 93 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS---NAYII--KDIFF------------------------NEEILE--KYNAFIIED 93 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc---CCEEc--chhhh------------------------chhHHh--cCCEEEEec
Confidence 458999999999999999988764 22111 10000 001112 235899999
Q ss_pred CCcCCh-HHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHH
Q 003094 642 IEKAHP-DVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELK 720 (848)
Q Consensus 642 id~l~~-~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 720 (848)
||.+.. .++..+..+.|.|. .+++|++..... +
T Consensus 94 i~~~~~~~lf~l~N~~~e~g~--------------~ilits~~~p~~-------------------------------l- 127 (214)
T PRK06620 94 IENWQEPALLHIFNIINEKQK--------------YLLLTSSDKSRN-------------------------------F- 127 (214)
T ss_pred cccchHHHHHHHHHHHHhcCC--------------EEEEEcCCCccc-------------------------------c-
Confidence 997753 34444444445543 456666432210 1
Q ss_pred hhcChhhhhccCe--EEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHHH
Q 003094 721 QYFRPEFLNRLDE--MIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMR 797 (848)
Q Consensus 721 ~~~~~~ll~R~d~--~i~f~~l~~~el~~I~~~~l~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~ 797 (848)
.+ |+|++|+.. ++.+.+++.+++..++.....+ ..+.++++++++|+... ..+.|.+.+.++.
T Consensus 128 -~l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~---------~~l~l~~ev~~~L~~~~---~~d~r~l~~~l~~ 192 (214)
T PRK06620 128 -TL-PDLSSRIKSVLSILLNSPDDELIKILIFKHFSI---------SSVTISRQIIDFLLVNL---PREYSKIIEILEN 192 (214)
T ss_pred -ch-HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHH---------cCCCCCHHHHHHHHHHc---cCCHHHHHHHHHH
Confidence 14 789999932 7999999999988888776654 23569999999999952 2456777777775
No 371
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.04 E-value=6.2e-10 Score=122.23 Aligned_cols=152 Identities=26% Similarity=0.313 Sum_probs=108.5
Q ss_pred CccCChHHHHHHHHHhccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccccccccchHHHH
Q 003094 198 PVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEER 277 (848)
Q Consensus 198 ~iiG~~~~~~~l~~~l~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~~~~g~~~~~ 277 (848)
.++|.++++..+...+. ...++||.||||||||++|+.+|+.+ +.+++.+.+..........|.....
T Consensus 25 ~~~g~~~~~~~~l~a~~--~~~~vll~G~PG~gKT~la~~lA~~l----------~~~~~~i~~t~~l~p~d~~G~~~~~ 92 (329)
T COG0714 25 VVVGDEEVIELALLALL--AGGHVLLEGPPGVGKTLLARALARAL----------GLPFVRIQCTPDLLPSDLLGTYAYA 92 (329)
T ss_pred eeeccHHHHHHHHHHHH--cCCCEEEECCCCccHHHHHHHHHHHh----------CCCeEEEecCCCCCHHHhcCchhHh
Confidence 37888888887765555 45899999999999999999999999 5678888887666555555543322
Q ss_pred HHHH----HHHHHh--CCC--eEEEEcccchhhhCCCCCchHHHHHHHhhhhcC--------------CceEEEEeeChH
Q 003094 278 LKKL----MEEIKQ--SDE--IILFIDEVHTLIGAGAAEGAIDAANILKPSLAR--------------GELQCIGATTLD 335 (848)
Q Consensus 278 l~~l----~~~~~~--~~~--~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~--------------~~v~vI~atn~~ 335 (848)
.... +..... -.. +|+++|||++.. .++++.|...++. ..+++|+|.|+.
T Consensus 93 ~~~~~~~~~~~~~gpl~~~~~~ill~DEInra~--------p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~ 164 (329)
T COG0714 93 ALLLEPGEFRFVPGPLFAAVRVILLLDEINRAP--------PEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPG 164 (329)
T ss_pred hhhccCCeEEEecCCcccccceEEEEeccccCC--------HHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCcc
Confidence 2210 000000 001 499999999974 4588888887762 447888888988
Q ss_pred HHHhhhhcChhhhccc-CCCcCCCCCHH-HHHHHHH
Q 003094 336 EYRKHIEKDPALERRF-QPVKVPEPSVD-ETIQILK 369 (848)
Q Consensus 336 ~~~~~~~~d~al~~Rf-~~i~~~~p~~~-e~~~Il~ 369 (848)
++.....+++++++|| -.+.++.|..+ +...++.
T Consensus 165 e~~g~~~l~eA~ldRf~~~~~v~yp~~~~e~~~i~~ 200 (329)
T COG0714 165 EYEGTYPLPEALLDRFLLRIYVDYPDSEEEERIILA 200 (329)
T ss_pred ccCCCcCCCHHHHhhEEEEEecCCCCchHHHHHHHH
Confidence 8877778899999999 58899998444 4433333
No 372
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.04 E-value=2.8e-09 Score=122.36 Aligned_cols=173 Identities=16% Similarity=0.226 Sum_probs=113.8
Q ss_pred EEEeecCCcchHHHHHHHHHHHhcC--CCCceEEecccccccccchhcccCCCCCCcccccccchhHHHHcCCCeEEEEc
Q 003094 563 SFIFSGPTGVGKSELAKALAAYYFG--SEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFD 640 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l~~--~~~~~i~i~~~~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~Vl~lD 640 (848)
.++|||++|+|||+|+.+|++.+.. .+..++.+++.++.+..... +.. .....+.+.+++ ..+|+||
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~a-l~~--------~~~~~f~~~y~~--~DLLlID 384 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINS-IRD--------GKGDSFRRRYRE--MDILLVD 384 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHH-HHh--------ccHHHHHHHhhc--CCEEEEe
Confidence 4899999999999999999998743 35667778877765431111 000 011123333333 3699999
Q ss_pred CCCcCCh--HHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHH
Q 003094 641 EIEKAHP--DVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEE 718 (848)
Q Consensus 641 Eid~l~~--~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 718 (848)
||+.+.. ..++.|+.+++.-. . .+..+|+|||.....+
T Consensus 385 DIq~l~gke~tqeeLF~l~N~l~--e--------~gk~IIITSd~~P~eL------------------------------ 424 (617)
T PRK14086 385 DIQFLEDKESTQEEFFHTFNTLH--N--------ANKQIVLSSDRPPKQL------------------------------ 424 (617)
T ss_pred hhccccCCHHHHHHHHHHHHHHH--h--------cCCCEEEecCCChHhh------------------------------
Confidence 9998843 34455555554311 0 1224667887544311
Q ss_pred HHhhcChhhhhccC--eEEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHH
Q 003094 719 LKQYFRPEFLNRLD--EMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIM 796 (848)
Q Consensus 719 l~~~~~~~ll~R~d--~~i~f~~l~~~el~~I~~~~l~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~ 796 (848)
..+.+.|.+||. .++.+.+++.+....|+...... ..+.++++++++|+.+ + ..+.|.|..+|.
T Consensus 425 --~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~---------r~l~l~~eVi~yLa~r-~--~rnvR~LegaL~ 490 (617)
T PRK14086 425 --VTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQ---------EQLNAPPEVLEFIASR-I--SRNIRELEGALI 490 (617)
T ss_pred --hhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHh---------cCCCCCHHHHHHHHHh-c--cCCHHHHHHHHH
Confidence 135688999994 36899999999999999776644 3467899999999985 2 235688888888
Q ss_pred HHHH
Q 003094 797 RLLE 800 (848)
Q Consensus 797 ~~l~ 800 (848)
++..
T Consensus 491 rL~a 494 (617)
T PRK14086 491 RVTA 494 (617)
T ss_pred HHHH
Confidence 7654
No 373
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.04 E-value=4e-09 Score=122.13 Aligned_cols=201 Identities=16% Similarity=0.186 Sum_probs=121.2
Q ss_pred CCccCChHHHHHHHHHhccCC------------CCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEE----e
Q 003094 197 DPVVGRQPQIERVVQILGRRT------------KNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITL----D 260 (848)
Q Consensus 197 d~iiG~~~~~~~l~~~l~~~~------------~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~----~ 260 (848)
..++|++..+..+.-.+.... ..|+||+|+||+|||++++.+++..... .+.. +
T Consensus 203 p~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~----------~~~~~~~~~ 272 (509)
T smart00350 203 PSIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRA----------VYTTGKGSS 272 (509)
T ss_pred ccccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcc----------eEcCCCCCC
Confidence 358899988777655553321 1389999999999999999999876321 1111 1
Q ss_pred CCccccc---ccccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcC--------------
Q 003094 261 MGLLVAG---TKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR-------------- 323 (848)
Q Consensus 261 ~~~l~~~---~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~-------------- 323 (848)
+..+... ....|++. +.. ..+..+++.+|+|||++.+. ...+..|...|+.
T Consensus 273 ~~~l~~~~~~~~~~g~~~--~~~--G~l~~A~~Gil~iDEi~~l~--------~~~q~~L~e~me~~~i~i~k~G~~~~l 340 (509)
T smart00350 273 AVGLTAAVTRDPETREFT--LEG--GALVLADNGVCCIDEFDKMD--------DSDRTAIHEAMEQQTISIAKAGITTTL 340 (509)
T ss_pred cCCccccceEccCcceEE--ecC--ccEEecCCCEEEEechhhCC--------HHHHHHHHHHHhcCEEEEEeCCEEEEe
Confidence 1111100 00011110 000 11122345699999999984 3366777777653
Q ss_pred -CceEEEEeeChHHH--------HhhhhcChhhhcccC--CCcCCCCCHHHHHHHHHHHHHHHhhh-----h--cCCCCh
Q 003094 324 -GELQCIGATTLDEY--------RKHIEKDPALERRFQ--PVKVPEPSVDETIQILKGLRERYEIH-----H--KLRYTD 385 (848)
Q Consensus 324 -~~v~vI~atn~~~~--------~~~~~~d~al~~Rf~--~i~~~~p~~~e~~~Il~~~~~~~~~~-----~--~~~~s~ 385 (848)
..+.+|+++|+.+- ...+.+++++++||+ .+..+.|+.+...+|.+..+...... . ...++.
T Consensus 341 ~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~ 420 (509)
T smart00350 341 NARCSVLAAANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQ 420 (509)
T ss_pred cCCcEEEEEeCCCCcccCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCH
Confidence 24688999998642 112478999999997 46778899999999998766532110 0 113556
Q ss_pred HHHHHHHhhhhcccccCCChhhHHHHHHHHhhHHH
Q 003094 386 EALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVR 420 (848)
Q Consensus 386 ~~l~~l~~~s~~~~~~~~~p~~a~~ll~~a~~~~~ 420 (848)
+.+.....+++.++.- .+++.+.+++.......+
T Consensus 421 ~~l~~yi~~ar~~~~P-~ls~~~~~~i~~~y~~~R 454 (509)
T smart00350 421 EFLRKYIAYAREKIKP-KLSEEAAEKLVKAYVDLR 454 (509)
T ss_pred HHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHhc
Confidence 6666666666653211 146667776666654444
No 374
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.04 E-value=1.5e-09 Score=123.28 Aligned_cols=178 Identities=17% Similarity=0.246 Sum_probs=117.1
Q ss_pred ceEEEeecCCcchHHHHHHHHHHHhc--CCCCceEEecccccccccchhcccCCCCCCcccccccchhHHHHc-CCCeEE
Q 003094 561 IASFIFSGPTGVGKSELAKALAAYYF--GSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRR-RPYTVV 637 (848)
Q Consensus 561 ~~~lLl~Gp~GtGKT~lA~~la~~l~--~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~-~~~~Vl 637 (848)
..+++|+|++|+|||+|++++++.+. ..+..++.+++.++....... ++.. .+.+.+.... ....+|
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~--l~~~--------~~~~~~~~~~~~~~dvL 210 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDI--LQKT--------HKEIEQFKNEICQNDVL 210 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHH--HHHh--------hhHHHHHHHHhccCCEE
Confidence 34589999999999999999999764 235666777776654321110 1100 0112222111 233599
Q ss_pred EEcCCCcCC--hHHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHH
Q 003094 638 LFDEIEKAH--PDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLV 715 (848)
Q Consensus 638 ~lDEid~l~--~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~ 715 (848)
+|||++.+. +..++.|..++..-. + .+..+|+|+|.....+
T Consensus 211 iIDDiq~l~~k~~~~e~lf~l~N~~~--~--------~~k~iIltsd~~P~~l--------------------------- 253 (450)
T PRK14087 211 IIDDVQFLSYKEKTNEIFFTIFNNFI--E--------NDKQLFFSSDKSPELL--------------------------- 253 (450)
T ss_pred EEeccccccCCHHHHHHHHHHHHHHH--H--------cCCcEEEECCCCHHHH---------------------------
Confidence 999999886 556677766665421 0 1225788887544311
Q ss_pred HHHHHhhcChhhhhccC--eEEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHH
Q 003094 716 TEELKQYFRPEFLNRLD--EMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRR 793 (848)
Q Consensus 716 ~~~l~~~~~~~ll~R~d--~~i~f~~l~~~el~~I~~~~l~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~ 793 (848)
..+.+.+.+||. -++.+.||+.+++.+|+.+.++.. |..+.++++++++|+... ..+.|.|..
T Consensus 254 -----~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~-------gl~~~l~~evl~~Ia~~~---~gd~R~L~g 318 (450)
T PRK14087 254 -----NGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQ-------NIKQEVTEEAINFISNYY---SDDVRKIKG 318 (450)
T ss_pred -----hhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHHhc-------CCCCCCCHHHHHHHHHcc---CCCHHHHHH
Confidence 236688999994 479999999999999998877641 333469999999999842 246788888
Q ss_pred HHHHHHH
Q 003094 794 AIMRLLE 800 (848)
Q Consensus 794 ~i~~~l~ 800 (848)
++.+++.
T Consensus 319 aL~~l~~ 325 (450)
T PRK14087 319 SVSRLNF 325 (450)
T ss_pred HHHHHHH
Confidence 8776654
No 375
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=99.04 E-value=1.5e-09 Score=114.30 Aligned_cols=144 Identities=18% Similarity=0.256 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccc-cchhcccCCCCC-
Q 003094 538 EAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMER-HTVSKLIGSPPG- 615 (848)
Q Consensus 538 ~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~-~~~~~l~g~~~g- 615 (848)
.+++.+.+.+...+ -.+.+||+||+|+||+.+|..+|+.+++.+.+- .|..+... |....++. |.+
T Consensus 4 ~~~~~L~~~i~~~r--------l~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~---~c~~~~~~~HPD~~~i~-p~~~ 71 (290)
T PRK05917 4 AAWEALIQRVRDQK--------VPSAIILHGQDLSNLSARAYELASLILKETSPE---AAYKISQKIHPDIHEFS-PQGK 71 (290)
T ss_pred HHHHHHHHHHHcCC--------cCeeEeeECCCCCcHHHHHHHHHHHHhCCCCcc---HHHHHhcCCCCCEEEEe-cCCC
Confidence 34555666665432 224589999999999999999999998754321 22222111 11111111 111
Q ss_pred --CcccccccchhHHHHc----CCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCchhhh
Q 003094 616 --YVGYTEGGQLTEAVRR----RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIE 689 (848)
Q Consensus 616 --~~g~~~~~~l~~~~~~----~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~i~ 689 (848)
..+.+..+.+...+.. +++.|++||++|+++++.+|.||+.||+ ++.+++||+.|+....
T Consensus 72 ~~~I~idqiR~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEE-----------Pp~~~~fiL~~~~~~~--- 137 (290)
T PRK05917 72 GRLHSIETPRAIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLED-----------PPQHGVIILTSAKPQR--- 137 (290)
T ss_pred CCcCcHHHHHHHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhc-----------CCCCeEEEEEeCChhh---
Confidence 1122222333333332 4567999999999999999999999998 4578999999874333
Q ss_pred ccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCC
Q 003094 690 KGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLT 741 (848)
Q Consensus 690 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~ 741 (848)
+.|.+++|| ..+.|+|+.
T Consensus 138 ---------------------------------ll~TI~SRc-q~~~~~~~~ 155 (290)
T PRK05917 138 ---------------------------------LPPTIRSRS-LSIHIPMEE 155 (290)
T ss_pred ---------------------------------CcHHHHhcc-eEEEccchh
Confidence 457888888 788888763
No 376
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.04 E-value=3.5e-09 Score=115.68 Aligned_cols=178 Identities=20% Similarity=0.194 Sum_probs=110.7
Q ss_pred CCCccCChHHHHHHHHHhcc--CCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccccccccch
Q 003094 196 LDPVVGRQPQIERVVQILGR--RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGE 273 (848)
Q Consensus 196 ld~iiG~~~~~~~l~~~l~~--~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~~~~g~ 273 (848)
+++++|....++++.+.+.. +...+|+|+|++||||+++|+.+...... .+.+++.+||..+... .
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r-------~~~pfv~v~c~~~~~~-----~ 72 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSSR-------WQGPFISLNCAALNEN-----L 72 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhCCc-------cCCCeEEEeCCCCCHH-----H
Confidence 56799999999888777654 55678999999999999999999864422 2567999999876421 0
Q ss_pred HHHHH------------HHHHHHHHhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCC-------------ceEE
Q 003094 274 FEERL------------KKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARG-------------ELQC 328 (848)
Q Consensus 274 ~~~~l------------~~l~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~-------------~v~v 328 (848)
++..+ ...........+..|||||++.|. ...+..|..+++.+ .+.+
T Consensus 73 ~~~~lfg~~~~~~~g~~~~~~g~l~~a~gGtL~l~~i~~L~--------~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~Ri 144 (326)
T PRK11608 73 LDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAP--------MLVQEKLLRVIEYGELERVGGSQPLQVNVRL 144 (326)
T ss_pred HHHHHccccccccCCcccccCCchhccCCCeEEeCChhhCC--------HHHHHHHHHHHhcCcEEeCCCCceeeccEEE
Confidence 11000 000111223445699999999994 44777777777532 3788
Q ss_pred EEeeChHHH--HhhhhcChhhhcccCCCcCCCCCHHHHHH----HHHHHHHHHhhhhc----CCCChHHHHHHHh
Q 003094 329 IGATTLDEY--RKHIEKDPALERRFQPVKVPEPSVDETIQ----ILKGLRERYEIHHK----LRYTDEALVSAAQ 393 (848)
Q Consensus 329 I~atn~~~~--~~~~~~d~al~~Rf~~i~~~~p~~~e~~~----Il~~~~~~~~~~~~----~~~s~~~l~~l~~ 393 (848)
|++|+..-. ...-...+.|..||..+.+..|+..+|.+ ++..++.++....+ ..++++++..+..
T Consensus 145 I~~s~~~l~~l~~~g~f~~dL~~~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L~~ 219 (326)
T PRK11608 145 VCATNADLPAMVAEGKFRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLLN 219 (326)
T ss_pred EEeCchhHHHHHHcCCchHHHHHhcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHh
Confidence 888876431 11223457788899766666666665544 34444433322221 2355555555443
No 377
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=4.5e-09 Score=112.00 Aligned_cols=169 Identities=25% Similarity=0.378 Sum_probs=115.5
Q ss_pred CCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccccccccc-hHHHHHHHHHHHHH----hCCCe
Q 003094 217 TKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRG-EFEERLKKLMEEIK----QSDEI 291 (848)
Q Consensus 217 ~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~~~~g-~~~~~l~~l~~~~~----~~~~~ 291 (848)
.+.|+||.||+|+|||.+|+.||+.+ +.++.-.||..+...+ |+| +.|.-+.+++..+. +++..
T Consensus 225 eKSNvLllGPtGsGKTllaqTLAr~l----------dVPfaIcDcTtLTQAG-YVGeDVEsvi~KLl~~A~~nVekAQqG 293 (564)
T KOG0745|consen 225 EKSNVLLLGPTGSGKTLLAQTLARVL----------DVPFAICDCTTLTQAG-YVGEDVESVIQKLLQEAEYNVEKAQQG 293 (564)
T ss_pred ecccEEEECCCCCchhHHHHHHHHHh----------CCCeEEecccchhhcc-cccccHHHHHHHHHHHccCCHHHHhcC
Confidence 46899999999999999999999999 6789999999887644 555 67778888887753 45567
Q ss_pred EEEEcccchhhhCCCC------CchHHHHHHHhhhhcC-----------------------CceEEEEeeChHHHHh---
Q 003094 292 ILFIDEVHTLIGAGAA------EGAIDAANILKPSLAR-----------------------GELQCIGATTLDEYRK--- 339 (848)
Q Consensus 292 IL~IDEid~l~~~~~~------~~~~~~~~~L~~~l~~-----------------------~~v~vI~atn~~~~~~--- 339 (848)
|+||||+|.+..+..+ -+...++..|+.++|. .++.+|+.....+..+
T Consensus 294 IVflDEvDKi~~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~ 373 (564)
T KOG0745|consen 294 IVFLDEVDKITKKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIIS 373 (564)
T ss_pred eEEEehhhhhcccCccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHH
Confidence 9999999999743221 1234577777777751 1245554332111111
Q ss_pred ------------------------------------------------hhhcChhhhcccC-CCcCCCCCHHHHHHHHHH
Q 003094 340 ------------------------------------------------HIEKDPALERRFQ-PVKVPEPSVDETIQILKG 370 (848)
Q Consensus 340 ------------------------------------------------~~~~d~al~~Rf~-~i~~~~p~~~e~~~Il~~ 370 (848)
.+-+=|.|.-||. .+.|...+.+++.++|..
T Consensus 374 rR~~d~slGFg~~s~~~vr~~~~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfVGRfPVlVplh~L~~~~Lv~VLtE 453 (564)
T KOG0745|consen 374 RRLDDKSLGFGAPSSKGVRANMATKSGVENDAEKRDELLEKVESGDLISFGMIPEFVGRFPVLVPLHSLDEDQLVRVLTE 453 (564)
T ss_pred HhhcchhcccCCCCCccchhhcccccCcchhHHHHHHHHhhccccchhhhcCcHHHhcccceEeeccccCHHHHHHHHhc
Confidence 1112277777887 678888889888888765
Q ss_pred ----HHHHHhhh---h--cCCCChHHHHHHHhhhh
Q 003094 371 ----LRERYEIH---H--KLRYTDEALVSAAQLSY 396 (848)
Q Consensus 371 ----~~~~~~~~---~--~~~~s~~~l~~l~~~s~ 396 (848)
+..+|... . .+.+++.+++.+++++-
T Consensus 454 PknaL~~Qyk~lf~~~nV~L~fTe~Al~~IAq~Al 488 (564)
T KOG0745|consen 454 PKNALGKQYKKLFGMDNVELHFTEKALEAIAQLAL 488 (564)
T ss_pred chhhHHHHHHHHhccCCeeEEecHHHHHHHHHHHH
Confidence 33333322 1 23578888888887653
No 378
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.02 E-value=2.8e-09 Score=124.10 Aligned_cols=225 Identities=15% Similarity=0.187 Sum_probs=122.0
Q ss_pred HHHHHHHHhhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEE----ec
Q 003094 521 RLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIR----LD 596 (848)
Q Consensus 521 ~l~~l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~----i~ 596 (848)
...++++.-.++++||++.+..|...+.....+ ..+...++|+||||||||++++++|..+ +..++. ++
T Consensus 74 W~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~~----~~~~~illL~GP~GsGKTTl~~~la~~l---~~~~~Ew~npv~ 146 (637)
T TIGR00602 74 WVEKYKPETQHELAVHKKKIEEVETWLKAQVLE----NAPKRILLITGPSGCGKSTTIKILSKEL---GIQVQEWSNPTL 146 (637)
T ss_pred hHHHhCCCCHHHhcCcHHHHHHHHHHHHhcccc----cCCCcEEEEECCCCCCHHHHHHHHHHHh---hhHHHHHhhhhh
Confidence 456777888899999999999988888754322 2222348999999999999999999876 222211 11
Q ss_pred ccccccccchhcccCCCCCCcccccccchhHHHH-------------cCCCeEEEEcCCCcCC----hHHHHHHH-hhhc
Q 003094 597 MSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVR-------------RRPYTVVLFDEIEKAH----PDVFNMML-QILE 658 (848)
Q Consensus 597 ~~~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~-------------~~~~~Vl~lDEid~l~----~~~~~~Ll-~~le 658 (848)
|....+...+..-++..-... ......+..++. .....||||||++.+. ..+++.|+ .+.+
T Consensus 147 ~~~~~~~~~~~~s~~~~~~~~-~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~~~~lq~lLr~~~~e 225 (637)
T TIGR00602 147 PDFQKNDHKVTLSLESCFSNF-QSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRDTRALHEILRWKYVS 225 (637)
T ss_pred hcccccccccchhhhhccccc-cchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhhHHHHHHHHHHHhhc
Confidence 111111110000000000000 001111111111 1235699999996553 23444434 3444
Q ss_pred CcEEEcCCCceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhh--ccCeEEE
Q 003094 659 DGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLN--RLDEMIV 736 (848)
Q Consensus 659 ~g~~~~~~g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~--R~d~~i~ 736 (848)
.+.++ +|+++|......-. .....| .....+.+++++ |+ .+|.
T Consensus 226 ~~~~p------------LI~I~TE~~~~~~~--~~~~~f--------------------~~~~lL~~eLls~~rv-~~I~ 270 (637)
T TIGR00602 226 IGRCP------------LVFIITESLEGDNN--QRRLLF--------------------PAETIMNKEILEEPRV-SNIS 270 (637)
T ss_pred CCCce------------EEEEecCCcccccc--cccccc--------------------chhcccCHhHhcccce-eEEE
Confidence 43322 33333321110000 000000 011224588887 55 5799
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHhcCCCeEee-cHHHHHHHHHccCCCCCCchHHHHHHHH
Q 003094 737 FRQLTKLEVKEIADIMLKEVFDRLKTKDIELQV-TERFRERVVEEGYNPSYGARPLRRAIMR 797 (848)
Q Consensus 737 f~~l~~~el~~I~~~~l~~~~~~~~~~~~~l~i-~~~a~~~l~~~~~~~~~g~r~L~~~i~~ 797 (848)
|+|++..++.+.+..++....... +....+ ++++++.|+. ...+++|.+|..
T Consensus 271 FnPia~t~l~K~L~rIl~~E~~~~---~~~~~~p~~~~l~~I~~------~s~GDiRsAIn~ 323 (637)
T TIGR00602 271 FNPIAPTIMKKFLNRIVTIEAKKN---GEKIKVPKKTSVELLCQ------GCSGDIRSAINS 323 (637)
T ss_pred eCCCCHHHHHHHHHHHHHhhhhcc---ccccccCCHHHHHHHHH------hCCChHHHHHHH
Confidence 999999999999998887633222 122223 5788888887 345678877773
No 379
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=99.01 E-value=1.6e-09 Score=117.61 Aligned_cols=160 Identities=17% Similarity=0.207 Sum_probs=101.0
Q ss_pred ccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCC-----ceEEe-cccccccc-cc
Q 003094 533 VIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEE-----AMIRL-DMSEFMER-HT 605 (848)
Q Consensus 533 vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~-----~~i~i-~~~~~~~~-~~ 605 (848)
+.|+....+.+.... .+-.+.+||+||+|+|||++|+.+|+.+.+... ++-.+ .|..+... |.
T Consensus 3 yPW~~~~w~~l~~~~----------~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~Hp 72 (325)
T PRK08699 3 YPWHQEQWRQIAEHW----------ERRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHP 72 (325)
T ss_pred CCccHHHHHHHHHhc----------CCcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCC
Confidence 467777777766541 122345999999999999999999999875321 22211 11112111 11
Q ss_pred hhcccCCC-----CC----CcccccccchhHHHHc----CCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeec
Q 003094 606 VSKLIGSP-----PG----YVGYTEGGQLTEAVRR----RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDF 672 (848)
Q Consensus 606 ~~~l~g~~-----~g----~~g~~~~~~l~~~~~~----~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~ 672 (848)
....+... .| ..+.+..+.+.+.+.. +.+.|+++|+++.+++..+|.|++.||+..
T Consensus 73 D~~~~~p~~~~~~~g~~~~~I~id~iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~----------- 141 (325)
T PRK08699 73 DFYEITPLSDEPENGRKLLQIKIDAVREIIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEPP----------- 141 (325)
T ss_pred CEEEEecccccccccccCCCcCHHHHHHHHHHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHhCc-----------
Confidence 11111110 01 0122222334444443 446799999999999999999999999842
Q ss_pred CCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHH
Q 003094 673 KNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIAD 750 (848)
Q Consensus 673 ~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~ 750 (848)
.++.||++|+... .+.|.+.+|| ..+.|+|++.+++.+.+.
T Consensus 142 ~~~~~Ilvth~~~------------------------------------~ll~ti~SRc-~~~~~~~~~~~~~~~~L~ 182 (325)
T PRK08699 142 PQVVFLLVSHAAD------------------------------------KVLPTIKSRC-RKMVLPAPSHEEALAYLR 182 (325)
T ss_pred CCCEEEEEeCChH------------------------------------hChHHHHHHh-hhhcCCCCCHHHHHHHHH
Confidence 3466777775322 2457788999 899999999998877663
No 380
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.01 E-value=1.7e-09 Score=119.58 Aligned_cols=157 Identities=20% Similarity=0.328 Sum_probs=105.8
Q ss_pred CCCCCccCChHHHHHHHHHhcc--CCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCccccc----
Q 003094 194 GKLDPVVGRQPQIERVVQILGR--RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAG---- 267 (848)
Q Consensus 194 ~~ld~iiG~~~~~~~l~~~l~~--~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~---- 267 (848)
.+|++++|..+.+.++.+...+ +...++||.|++||||..+|+++.+.-... +.+++.+||+.+...
T Consensus 242 y~f~~Iig~S~~m~~~~~~akr~A~tdstVLi~GESGTGKElfA~~IH~~S~R~-------~~PFIaiNCaAiPe~LlES 314 (560)
T COG3829 242 YTFDDIIGESPAMLRVLELAKRIAKTDSTVLILGESGTGKELFARAIHNLSPRA-------NGPFIAINCAAIPETLLES 314 (560)
T ss_pred cchhhhccCCHHHHHHHHHHHhhcCCCCcEEEecCCCccHHHHHHHHHhcCccc-------CCCeEEEecccCCHHHHHH
Confidence 4699999999999998887654 677889999999999999999999866543 567999999765431
Q ss_pred -------ccccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCC-------------ceE
Q 003094 268 -------TKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARG-------------ELQ 327 (848)
Q Consensus 268 -------~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~-------------~v~ 327 (848)
+.+.|....-=.-+|+. +++..||+|||..| +..++..|+++++.. .+.
T Consensus 315 ELFGye~GAFTGA~~~GK~GlfE~---A~gGTLFLDEIgem--------pl~LQaKLLRVLQEkei~rvG~t~~~~vDVR 383 (560)
T COG3829 315 ELFGYEKGAFTGASKGGKPGLFEL---ANGGTLFLDEIGEM--------PLPLQAKLLRVLQEKEIERVGGTKPIPVDVR 383 (560)
T ss_pred HHhCcCCccccccccCCCCcceee---ccCCeEEehhhccC--------CHHHHHHHHHHHhhceEEecCCCCceeeEEE
Confidence 11122111000112222 33568999999998 456888888888632 389
Q ss_pred EEEeeChHHHHhhhhcChhhhc----ccCCCcCCCCCHHHHHHHHHH
Q 003094 328 CIGATTLDEYRKHIEKDPALER----RFQPVKVPEPSVDETIQILKG 370 (848)
Q Consensus 328 vI~atn~~~~~~~~~~d~al~~----Rf~~i~~~~p~~~e~~~Il~~ 370 (848)
||+|||..-. +.+ -+..|+. |+.++.+..|..-+|.+=+..
T Consensus 384 IIAATN~nL~-~~i-~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~ 428 (560)
T COG3829 384 IIAATNRNLE-KMI-AEGTFREDLYYRLNVIPITIPPLRERKEDIPL 428 (560)
T ss_pred EEeccCcCHH-HHH-hcCcchhhheeeeceeeecCCCcccCcchHHH
Confidence 9999998642 222 1223333 667777777776665544333
No 381
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=99.00 E-value=1.4e-08 Score=109.43 Aligned_cols=148 Identities=17% Similarity=0.234 Sum_probs=105.7
Q ss_pred HHHHHHHHHhccCCCCCc-EEECCCCCcHHHHHHHHHHHhhCCCCCC--------------CCCCceEEEEeCCcccccc
Q 003094 204 PQIERVVQILGRRTKNNP-CLIGEPGVGKTAIAEGLAQRIASGDVPD--------------TIEGKKVITLDMGLLVAGT 268 (848)
Q Consensus 204 ~~~~~l~~~l~~~~~~~i-LL~GppGtGKT~la~~la~~l~~~~~~~--------------~l~~~~v~~~~~~~l~~~~ 268 (848)
...+.+.+.+......|. ||+||+|+||+++|+.+|+.+.+..... ...+..++.+... .+
T Consensus 9 ~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~---~~- 84 (325)
T PRK06871 9 PTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPI---DN- 84 (325)
T ss_pred HHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccc---cC-
Confidence 455677777777666665 6899999999999999999998743211 1123345545321 11
Q ss_pred cccchHHHHHHHHHHHHH----hCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhc--CCceEEEEeeChHHHHhhhh
Q 003094 269 KYRGEFEERLKKLMEEIK----QSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLA--RGELQCIGATTLDEYRKHIE 342 (848)
Q Consensus 269 ~~~g~~~~~l~~l~~~~~----~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~--~~~v~vI~atn~~~~~~~~~ 342 (848)
+.. ..+.++.+.+.+. .++..|++||++|.|. ....|.|++.+| .+++++|.+|+.++ .
T Consensus 85 ~~I--~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~--------~~AaNaLLKtLEEPp~~~~fiL~t~~~~-----~ 149 (325)
T PRK06871 85 KDI--GVDQVREINEKVSQHAQQGGNKVVYIQGAERLT--------EAAANALLKTLEEPRPNTYFLLQADLSA-----A 149 (325)
T ss_pred CCC--CHHHHHHHHHHHhhccccCCceEEEEechhhhC--------HHHHHHHHHHhcCCCCCeEEEEEECChH-----h
Confidence 111 1344555555543 3456799999999994 458999999998 45678888887776 6
Q ss_pred cChhhhcccCCCcCCCCCHHHHHHHHHH
Q 003094 343 KDPALERRFQPVKVPEPSVDETIQILKG 370 (848)
Q Consensus 343 ~d~al~~Rf~~i~~~~p~~~e~~~Il~~ 370 (848)
+.|.++|||+.+.|++|+.++..+.|..
T Consensus 150 llpTI~SRC~~~~~~~~~~~~~~~~L~~ 177 (325)
T PRK06871 150 LLPTIYSRCQTWLIHPPEEQQALDWLQA 177 (325)
T ss_pred CchHHHhhceEEeCCCCCHHHHHHHHHH
Confidence 8999999999999999999988777764
No 382
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.99 E-value=1.5e-09 Score=103.65 Aligned_cols=111 Identities=25% Similarity=0.390 Sum_probs=70.6
Q ss_pred CcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccccccccchHH-------HHHHHHHHHHHhCCCeE
Q 003094 220 NPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFE-------ERLKKLMEEIKQSDEII 292 (848)
Q Consensus 220 ~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~~~~g~~~-------~~l~~l~~~~~~~~~~I 292 (848)
++||+||||||||++++.+|+.+ +.+++.+.++.........|... ..-..+...++ .+.|
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~----------~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~--~~~i 68 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALL----------GRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR--KGGI 68 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH----------TCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH--EEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHh----------hcceEEEEeccccccccceeeeeeccccccccccccccccc--ceeE
Confidence 58999999999999999999999 56777777765433211111100 00000111111 4679
Q ss_pred EEEcccchhhhCCCCCchHHHHHHHhhhhcC---------------C------ceEEEEeeChHHHHhhhhcChhhhccc
Q 003094 293 LFIDEVHTLIGAGAAEGAIDAANILKPSLAR---------------G------ELQCIGATTLDEYRKHIEKDPALERRF 351 (848)
Q Consensus 293 L~IDEid~l~~~~~~~~~~~~~~~L~~~l~~---------------~------~v~vI~atn~~~~~~~~~~d~al~~Rf 351 (848)
+||||++... .++.+.|..+++. . ++.+|+|+|+.+ .....++++|.+||
T Consensus 69 l~lDEin~a~--------~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~-~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 69 LVLDEINRAP--------PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRD-KGRKELSPALLDRF 139 (139)
T ss_dssp EEESSCGG----------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST---TTTTCHHHHTT-
T ss_pred EEECCcccCC--------HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCC-CCcCcCCHHHHhhC
Confidence 9999999873 4466666666641 1 389999999988 45557999999998
No 383
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.99 E-value=5.6e-10 Score=109.77 Aligned_cols=109 Identities=23% Similarity=0.356 Sum_probs=73.3
Q ss_pred CCCCcEEECCCCCcHHHHHHHHHHHhh-CCCCCCCCCCceEEEEeCCcccccccccchHHHHHHHHHHH----HHhCCCe
Q 003094 217 TKNNPCLIGEPGVGKTAIAEGLAQRIA-SGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEE----IKQSDEI 291 (848)
Q Consensus 217 ~~~~iLL~GppGtGKT~la~~la~~l~-~~~~~~~l~~~~v~~~~~~~l~~~~~~~g~~~~~l~~l~~~----~~~~~~~ 291 (848)
+..+++|+||+|||||.+|+.+|+.+. .. ..+++.+|++.+..+. +.+..+..++.. +......
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~-------~~~~~~~d~s~~~~~~----~~~~~~~~l~~~~~~~v~~~~~g 70 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGS-------ERPLIRIDMSEYSEGD----DVESSVSKLLGSPPGYVGAEEGG 70 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SS-------CCEEEEEEGGGHCSHH----HCSCHCHHHHHHTTCHHHHHHHT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCC-------ccchHHHhhhcccccc----hHHhhhhhhhhcccceeeccchh
Confidence 457899999999999999999999996 32 4689999999887511 111112222221 1111223
Q ss_pred EEEEcccchhhhCCCCC---chHHHHHHHhhhhcC-------------CceEEEEeeChHH
Q 003094 292 ILFIDEVHTLIGAGAAE---GAIDAANILKPSLAR-------------GELQCIGATTLDE 336 (848)
Q Consensus 292 IL~IDEid~l~~~~~~~---~~~~~~~~L~~~l~~-------------~~v~vI~atn~~~ 336 (848)
|+||||+|...+..... ....+++.|+++++. .++++|+|+|-..
T Consensus 71 VVllDEidKa~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 71 VVLLDEIDKAHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp EEEEETGGGCSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred hhhhHHHhhccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 99999999998742211 123688999988863 3478999998654
No 384
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.98 E-value=9.6e-09 Score=120.62 Aligned_cols=124 Identities=15% Similarity=0.236 Sum_probs=82.0
Q ss_pred CCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCC-----------------------ceEEEEeeChHHHHhhhhcC
Q 003094 288 SDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARG-----------------------ELQCIGATTLDEYRKHIEKD 344 (848)
Q Consensus 288 ~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~-----------------------~v~vI~atn~~~~~~~~~~d 344 (848)
.++.+|||||++.|. ...+..|+..++.+ .+.+|+++++.+. ..++
T Consensus 216 AngGtL~Ldei~~L~--------~~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~l---~~l~ 284 (608)
T TIGR00764 216 AHKGVLYIDEIKTMP--------LEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLDDL---EGMH 284 (608)
T ss_pred CCCCEEEEEChHhCC--------HHHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHHHH---hhcC
Confidence 345689999999884 34666777666421 4678999998643 2689
Q ss_pred hhhhcccC----CCcCC---CCCHHHHHHHHHHHHHHHhhh-hcCCCChHHHHHHHhhhhcccccCCC----hhhHHHHH
Q 003094 345 PALERRFQ----PVKVP---EPSVDETIQILKGLRERYEIH-HKLRYTDEALVSAAQLSYQYISDRFL----PDKAIDLI 412 (848)
Q Consensus 345 ~al~~Rf~----~i~~~---~p~~~e~~~Il~~~~~~~~~~-~~~~~s~~~l~~l~~~s~~~~~~~~~----p~~a~~ll 412 (848)
|.|.+||. .+.|+ +.+.+.+.++++.+.+....+ ....++++++..+.+.+.+..+++.. .+...+++
T Consensus 285 ~~l~~rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R~ag~r~~lsl~~R~L~~ll 364 (608)
T TIGR00764 285 PALRSRIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQRRAGRKDHLTLRLRELGGLV 364 (608)
T ss_pred HHHHHHhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHHHhcccccCCCHHHHHHHH
Confidence 99999997 13332 235566666656555544433 22368999999998877776655543 56777888
Q ss_pred HHHhhHHHHh
Q 003094 413 DEAGSRVRLR 422 (848)
Q Consensus 413 ~~a~~~~~~~ 422 (848)
+.|...+...
T Consensus 365 R~A~~iA~~~ 374 (608)
T TIGR00764 365 RAAGDIAKSS 374 (608)
T ss_pred HHHHHHHHhc
Confidence 8876555443
No 385
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.98 E-value=1.3e-08 Score=116.90 Aligned_cols=162 Identities=21% Similarity=0.286 Sum_probs=105.2
Q ss_pred CCCCCccCChHHHHHHHHHhc--cCCCCCcEEECCCCCcHHHHHHHHHHHhhC-CCCCCCCCCceEEEEeCCcccccccc
Q 003094 194 GKLDPVVGRQPQIERVVQILG--RRTKNNPCLIGEPGVGKTAIAEGLAQRIAS-GDVPDTIEGKKVITLDMGLLVAGTKY 270 (848)
Q Consensus 194 ~~ld~iiG~~~~~~~l~~~l~--~~~~~~iLL~GppGtGKT~la~~la~~l~~-~~~~~~l~~~~v~~~~~~~l~~~~~~ 270 (848)
..|++++|....++++.+.+. .+...++||+|++||||+++|+.|.+.+.. ......-.+.+++.+||+.+...
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e~--- 292 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAES--- 292 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCChh---
Confidence 358889999999998888765 356788999999999999999999986210 00001113578999999876421
Q ss_pred cchHHHHHHHHHH----------------HHHhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCCc---------
Q 003094 271 RGEFEERLKKLME----------------EIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGE--------- 325 (848)
Q Consensus 271 ~g~~~~~l~~l~~----------------~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~~--------- 325 (848)
.++ ..+|. ......+..|||||++.|. ...+..|..+++.+.
T Consensus 293 --lle---seLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp--------~~~Q~kLl~~L~e~~~~r~G~~~~ 359 (538)
T PRK15424 293 --LLE---AELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMP--------LPLQTRLLRVLEEKEVTRVGGHQP 359 (538)
T ss_pred --hHH---HHhcCCccccccCccccccCCchhccCCCEEEEcChHhCC--------HHHHHHHHhhhhcCeEEecCCCce
Confidence 001 11111 1122345699999999994 457888888886433
Q ss_pred ----eEEEEeeChHHHH--hhhhcChhhhcccCCCcCCCCCHHHHHHHHHHH
Q 003094 326 ----LQCIGATTLDEYR--KHIEKDPALERRFQPVKVPEPSVDETIQILKGL 371 (848)
Q Consensus 326 ----v~vI~atn~~~~~--~~~~~d~al~~Rf~~i~~~~p~~~e~~~Il~~~ 371 (848)
+.+|++|+..-.. ..-...+.|..|+..+.+..|+..+|.+=+..+
T Consensus 360 ~~~dvRiIaat~~~L~~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L 411 (538)
T PRK15424 360 VPVDVRVISATHCDLEEDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPL 411 (538)
T ss_pred eccceEEEEecCCCHHHHHhcccchHHHHHHhcCCeecCCChhhchhHHHHH
Confidence 4788888765321 111133456667777777777777665533333
No 386
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.98 E-value=8.6e-10 Score=114.82 Aligned_cols=191 Identities=20% Similarity=0.324 Sum_probs=107.3
Q ss_pred ccCChHHHHHHHHHhccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeC-Cc--------c-----
Q 003094 199 VVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDM-GL--------L----- 264 (848)
Q Consensus 199 iiG~~~~~~~l~~~l~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~-~~--------l----- 264 (848)
++||++++++|.+.+.......++|+||.|+|||++++.+.+.+..... .+++++. .. +
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~-------~~~y~~~~~~~~~~~~~~~~~~~~ 73 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEKGY-------KVVYIDFLEESNESSLRSFIEETS 73 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT--EE-------CCCHHCCTTBSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCC-------cEEEEecccchhhhHHHHHHHHHH
Confidence 4799999999999998877888999999999999999999998843211 1111111 00 0
Q ss_pred --------cc----c-------ccccchHHHHHHHHHHHHHhC-CCeEEEEcccchhh-hCCCCC-chHHHHHHHhhhhc
Q 003094 265 --------VA----G-------TKYRGEFEERLKKLMEEIKQS-DEIILFIDEVHTLI-GAGAAE-GAIDAANILKPSLA 322 (848)
Q Consensus 265 --------~~----~-------~~~~g~~~~~l~~l~~~~~~~-~~~IL~IDEid~l~-~~~~~~-~~~~~~~~L~~~l~ 322 (848)
.. . ..........+..+++.+.+. ..+||+|||++.+. ...... -...+.+.+.....
T Consensus 74 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~ 153 (234)
T PF01637_consen 74 LADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLS 153 (234)
T ss_dssp HHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccc
Confidence 00 0 001123345566666666654 34899999999997 221111 11233444444444
Q ss_pred CCceEEEEeeChHHHHh-hhhcChhhhcccCCCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhccc
Q 003094 323 RGELQCIGATTLDEYRK-HIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYI 399 (848)
Q Consensus 323 ~~~v~vI~atn~~~~~~-~~~~d~al~~Rf~~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~ 399 (848)
..++.+|.+++...+.. .......+..|+..+.+++.+.++..+++....... .++.++++.+..+..++.|+.
T Consensus 154 ~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~gG~P 228 (234)
T PF01637_consen 154 QQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL---IKLPFSDEDIEEIYSLTGGNP 228 (234)
T ss_dssp -TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC---------HHHHHHHHHHHTT-H
T ss_pred cCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh---hcccCCHHHHHHHHHHhCCCH
Confidence 56676666666554432 234455677788789999999999999999876642 222458999999999988864
No 387
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.98 E-value=2.9e-09 Score=112.66 Aligned_cols=155 Identities=15% Similarity=0.238 Sum_probs=100.2
Q ss_pred ChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCC----ceEE-ecccccccc-cchhc
Q 003094 535 GQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEE----AMIR-LDMSEFMER-HTVSK 608 (848)
Q Consensus 535 gq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~----~~i~-i~~~~~~~~-~~~~~ 608 (848)
.|..+++.+.+++...+ ..+.+||+|| +||+++|+.+|+.+++.+. ++-. -.|..+... |..-.
T Consensus 6 ~q~~~~~~L~~~~~~~r--------l~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~ 75 (290)
T PRK07276 6 KQPKVFQRFQTILEQDR--------LNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVT 75 (290)
T ss_pred HHHHHHHHHHHHHHcCC--------cceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCee
Confidence 46677777777776542 2246899996 6899999999999976542 2211 122222211 11111
Q ss_pred ccCCCCC-CcccccccchhHHHHc----CCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCC
Q 003094 609 LIGSPPG-YVGYTEGGQLTEAVRR----RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNV 683 (848)
Q Consensus 609 l~g~~~g-~~g~~~~~~l~~~~~~----~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~ 683 (848)
.+.. .| ..+.+..+.+...+.. +++.|++||++|++++...|.||+.||+ ++.+++||++|+.
T Consensus 76 ~i~p-~~~~I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m~~~AaNaLLKtLEE-----------Pp~~t~~iL~t~~ 143 (290)
T PRK07276 76 VIEP-QGQVIKTDTIRELVKNFSQSGYEGKQQVFIIKDADKMHVNAANSLLKVIEE-----------PQSEIYIFLLTND 143 (290)
T ss_pred eecC-CCCcCCHHHHHHHHHHHhhCcccCCcEEEEeehhhhcCHHHHHHHHHHhcC-----------CCCCeEEEEEECC
Confidence 2211 11 1122222333333332 4568999999999999999999999998 4468899999874
Q ss_pred CchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHH
Q 003094 684 GSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIA 749 (848)
Q Consensus 684 ~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~ 749 (848)
... +.|.+++|| ..+.|++ +.+++.+++
T Consensus 144 ~~~------------------------------------lLpTI~SRc-q~i~f~~-~~~~~~~~L 171 (290)
T PRK07276 144 ENK------------------------------------VLPTIKSRT-QIFHFPK-NEAYLIQLL 171 (290)
T ss_pred hhh------------------------------------CchHHHHcc-eeeeCCC-cHHHHHHHH
Confidence 333 458899999 9999977 677766665
No 388
>PRK09087 hypothetical protein; Validated
Probab=98.96 E-value=1.2e-08 Score=105.35 Aligned_cols=134 Identities=19% Similarity=0.280 Sum_probs=88.5
Q ss_pred EEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhcccCCCCCCcccccccchhHHHHcCCCeEEEEcCC
Q 003094 563 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEI 642 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEi 642 (848)
.++|+||+|+|||+|++++++.. +.. .++...+.. .+...+. ..+|+||++
T Consensus 46 ~l~l~G~~GsGKThLl~~~~~~~---~~~--~i~~~~~~~---------------------~~~~~~~---~~~l~iDDi 96 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWREKS---DAL--LIHPNEIGS---------------------DAANAAA---EGPVLIEDI 96 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHhc---CCE--EecHHHcch---------------------HHHHhhh---cCeEEEECC
Confidence 48999999999999999998753 222 222222211 1111222 248999999
Q ss_pred CcCCh---HHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHH
Q 003094 643 EKAHP---DVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEEL 719 (848)
Q Consensus 643 d~l~~---~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l 719 (848)
+.+.. .+++.+....+.| ..+|+|++......
T Consensus 97 ~~~~~~~~~lf~l~n~~~~~g--------------~~ilits~~~p~~~------------------------------- 131 (226)
T PRK09087 97 DAGGFDETGLFHLINSVRQAG--------------TSLLMTSRLWPSSW------------------------------- 131 (226)
T ss_pred CCCCCCHHHHHHHHHHHHhCC--------------CeEEEECCCChHHh-------------------------------
Confidence 98742 2333333444433 25777776433311
Q ss_pred HhhcChhhhhccC--eEEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCeEeecHHHHHHHHHc
Q 003094 720 KQYFRPEFLNRLD--EMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEE 780 (848)
Q Consensus 720 ~~~~~~~ll~R~d--~~i~f~~l~~~el~~I~~~~l~~~~~~~~~~~~~l~i~~~a~~~l~~~ 780 (848)
..+.|+|.+||. .++.+.+++.+++.+++.+.++. ..+.++++++++|+.+
T Consensus 132 -~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~---------~~~~l~~ev~~~La~~ 184 (226)
T PRK09087 132 -NVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFAD---------RQLYVDPHVVYYLVSR 184 (226)
T ss_pred -ccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHH---------cCCCCCHHHHHHHHHH
Confidence 123588999995 57999999999999999888765 2356999999999995
No 389
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.96 E-value=3e-09 Score=115.99 Aligned_cols=182 Identities=21% Similarity=0.321 Sum_probs=114.7
Q ss_pred CCCCccCChHHHHHHHHHhcc--CCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccccc----
Q 003094 195 KLDPVVGRQPQIERVVQILGR--RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGT---- 268 (848)
Q Consensus 195 ~ld~iiG~~~~~~~l~~~l~~--~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~---- 268 (848)
.+..|||+.+.+.++.+.+.. ++..+|||.|++||||..+|++|.+.-... +.+++.+||..+...-
T Consensus 221 ~~~~iIG~S~am~~ll~~i~~VA~Sd~tVLi~GETGtGKElvAraIH~~S~R~-------~kPfV~~NCAAlPesLlESE 293 (550)
T COG3604 221 EVGGIIGRSPAMRQLLKEIEVVAKSDSTVLIRGETGTGKELVARAIHQLSPRR-------DKPFVKLNCAALPESLLESE 293 (550)
T ss_pred ccccceecCHHHHHHHHHHHHHhcCCCeEEEecCCCccHHHHHHHHHhhCccc-------CCCceeeeccccchHHHHHH
Confidence 466899999999998887654 677889999999999999999999876553 6789999998765321
Q ss_pred ---cccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCCc-------------eEEEEee
Q 003094 269 ---KYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGE-------------LQCIGAT 332 (848)
Q Consensus 269 ---~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~~-------------v~vI~at 332 (848)
...|.|...+..-.....-.+++.||+|||..|. ..++..|++.+..++ +.||++|
T Consensus 294 LFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGelP--------L~lQaKLLRvLQegEieRvG~~r~ikVDVRiIAAT 365 (550)
T COG3604 294 LFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGELP--------LALQAKLLRVLQEGEIERVGGDRTIKVDVRVIAAT 365 (550)
T ss_pred HhcccccccccchhccCcceeecCCCeEechhhccCC--------HHHHHHHHHHHhhcceeecCCCceeEEEEEEEecc
Confidence 1112222112111111122456799999999984 457888888886443 8999999
Q ss_pred ChHHHHhhhhcChhhhc----ccCCCcCCCCCHHHHHH----HHHHHHHHHhhhh---cCCCChHHHHHHHh
Q 003094 333 TLDEYRKHIEKDPALER----RFQPVKVPEPSVDETIQ----ILKGLRERYEIHH---KLRYTDEALVSAAQ 393 (848)
Q Consensus 333 n~~~~~~~~~~d~al~~----Rf~~i~~~~p~~~e~~~----Il~~~~~~~~~~~---~~~~s~~~l~~l~~ 393 (848)
|.+-.. . -.+..|+. |+.++.+..|..-||.+ +...+++++.... .+.++.++++.+..
T Consensus 366 NRDL~~-~-V~~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~~ 435 (550)
T COG3604 366 NRDLEE-M-VRDGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLSS 435 (550)
T ss_pred chhHHH-H-HHcCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHc
Confidence 985321 1 12333332 66655555555544433 3333444433222 23456666655544
No 390
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.95 E-value=1.1e-08 Score=117.64 Aligned_cols=177 Identities=18% Similarity=0.265 Sum_probs=109.8
Q ss_pred CCCCCccCChHHHHHHHHHhc--cCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccccc---
Q 003094 194 GKLDPVVGRQPQIERVVQILG--RRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGT--- 268 (848)
Q Consensus 194 ~~ld~iiG~~~~~~~l~~~l~--~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~--- 268 (848)
..|++++|..+.++++.+.+. .....++||+|++||||+++|+.|.+.-.. .+.+++.+||..+....
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r-------~~~pfv~inC~~l~e~lles 281 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLSGR-------RDFPFVAINCGAIAESLLEA 281 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHhcCc-------CCCCEEEeccccCChhHHHH
Confidence 468889999999998888765 356788999999999999999999875432 25689999998764210
Q ss_pred --------cccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCCc-------------eE
Q 003094 269 --------KYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGE-------------LQ 327 (848)
Q Consensus 269 --------~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~~-------------v~ 327 (848)
.+.|.....-..+++ ...+..|||||++.|. ...+..|..+++.+. +.
T Consensus 282 eLFG~~~gaftga~~~~~~Gl~e---~A~gGTLfLdeI~~Lp--------~~~Q~~Ll~~L~~~~~~r~g~~~~~~~dvR 350 (526)
T TIGR02329 282 ELFGYEEGAFTGARRGGRTGLIE---AAHRGTLFLDEIGEMP--------LPLQTRLLRVLEEREVVRVGGTEPVPVDVR 350 (526)
T ss_pred HhcCCcccccccccccccccchh---hcCCceEEecChHhCC--------HHHHHHHHHHHhcCcEEecCCCceeeecce
Confidence 000000000001222 2345699999999994 457888888876433 47
Q ss_pred EEEeeChHHHH--hhhhcChhhhcccCCCcCCCCCHHHHHH----HHHHHHHHHhhhhcCCCChHHH
Q 003094 328 CIGATTLDEYR--KHIEKDPALERRFQPVKVPEPSVDETIQ----ILKGLRERYEIHHKLRYTDEAL 388 (848)
Q Consensus 328 vI~atn~~~~~--~~~~~d~al~~Rf~~i~~~~p~~~e~~~----Il~~~~~~~~~~~~~~~s~~~l 388 (848)
+|++|+..-.. ..-...+.|..|+..+.+..|+..+|.+ ++..++.++....++.++++++
T Consensus 351 iIaat~~~l~~~v~~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~ 417 (526)
T TIGR02329 351 VVAATHCALTTAVQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAA 417 (526)
T ss_pred EEeccCCCHHHHhhhcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 88888765321 1112334555577766666666666554 3344444332222333444443
No 391
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.95 E-value=1.7e-08 Score=121.76 Aligned_cols=181 Identities=19% Similarity=0.321 Sum_probs=112.5
Q ss_pred CCCCCccCChHHHHHHHHHhcc--CCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccccc---
Q 003094 194 GKLDPVVGRQPQIERVVQILGR--RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGT--- 268 (848)
Q Consensus 194 ~~ld~iiG~~~~~~~l~~~l~~--~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~--- 268 (848)
..+++++|....++++.+.+.. ....++||+|++|||||++|++|...... .+.+++.++|..+....
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r-------~~~~~v~i~c~~~~~~~~~~ 445 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGR-------NNRRMVKMNCAAMPAGLLES 445 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCC-------CCCCeEEEecccCChhHhhh
Confidence 3577899999999988766553 55678999999999999999999886532 25689999998764210
Q ss_pred --------cccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcC-------------CceE
Q 003094 269 --------KYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR-------------GELQ 327 (848)
Q Consensus 269 --------~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~-------------~~v~ 327 (848)
.+.|...... .......+.+|||||++.+. .+.+..|..+++. ..+.
T Consensus 446 ~lfg~~~~~~~g~~~~~~----g~le~a~~GtL~Ldei~~L~--------~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~R 513 (686)
T PRK15429 446 DLFGHERGAFTGASAQRI----GRFELADKSSLFLDEVGDMP--------LELQPKLLRVLQEQEFERLGSNKIIQTDVR 513 (686)
T ss_pred hhcCcccccccccccchh----hHHHhcCCCeEEEechhhCC--------HHHHHHHHHHHHhCCEEeCCCCCcccceEE
Confidence 0111111111 22233445699999999994 4577777777653 2468
Q ss_pred EEEeeChHHH--HhhhhcChhhhcccCCCcCCCCCHHHHHH----HHHHHHHHHhhhhc--C-CCChHHHHHHHh
Q 003094 328 CIGATTLDEY--RKHIEKDPALERRFQPVKVPEPSVDETIQ----ILKGLRERYEIHHK--L-RYTDEALVSAAQ 393 (848)
Q Consensus 328 vI~atn~~~~--~~~~~~d~al~~Rf~~i~~~~p~~~e~~~----Il~~~~~~~~~~~~--~-~~s~~~l~~l~~ 393 (848)
+|++|+..-. ...-.....+..|+..+.+..|+..+|.+ +++.++.++...++ + .++++++..+..
T Consensus 514 iI~~t~~~l~~~~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~L~~ 588 (686)
T PRK15429 514 LIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLSN 588 (686)
T ss_pred EEEeCCCCHHHHHHcCcccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHh
Confidence 9999876531 11112345566677766666666666654 34444443322221 1 355555555443
No 392
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.95 E-value=9.3e-09 Score=111.66 Aligned_cols=153 Identities=18% Similarity=0.197 Sum_probs=104.4
Q ss_pred HHHHHHHHHhccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCC-C-C-------------CCCCceEEEEeCCccc---
Q 003094 204 PQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDV-P-D-------------TIEGKKVITLDMGLLV--- 265 (848)
Q Consensus 204 ~~~~~l~~~l~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~-~-~-------------~l~~~~v~~~~~~~l~--- 265 (848)
+..+++... ..+-+..+||+||+|+||+++|+.+|+.+.+... + . ......++.+......
T Consensus 8 ~~~~~l~~~-~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~ 86 (342)
T PRK06964 8 DDWNRLQAL-RARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEA 86 (342)
T ss_pred HHHHHHHHh-cCCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccc
Confidence 344555554 3445566789999999999999999999987541 1 0 1223345544332110
Q ss_pred --------------cccc---c-cchHHHHHHHHHHHHH----hCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhc-
Q 003094 266 --------------AGTK---Y-RGEFEERLKKLMEEIK----QSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLA- 322 (848)
Q Consensus 266 --------------~~~~---~-~g~~~~~l~~l~~~~~----~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~- 322 (848)
.|.+ . ..-..+.++.+.+.+. .++..|++||++|.|. ....|.|++.+|
T Consensus 87 ~~~~~~~~~~~~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~--------~~AaNaLLKtLEE 158 (342)
T PRK06964 87 PGAADEAKEADADEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALN--------VAAANALLKTLEE 158 (342)
T ss_pred cccccccccchhhcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcC--------HHHHHHHHHHhcC
Confidence 0000 0 0112345555555543 2456699999999994 458999999998
Q ss_pred -CCceEEEEeeChHHHHhhhhcChhhhcccCCCcCCCCCHHHHHHHHHH
Q 003094 323 -RGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKG 370 (848)
Q Consensus 323 -~~~v~vI~atn~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~Il~~ 370 (848)
..++++|.+|+.++ .+.|.++|||+.+.|++|+.++..+.|..
T Consensus 159 Pp~~t~fiL~t~~~~-----~LLpTI~SRcq~i~~~~~~~~~~~~~L~~ 202 (342)
T PRK06964 159 PPPGTVFLLVSARID-----RLLPTILSRCRQFPMTVPAPEAAAAWLAA 202 (342)
T ss_pred CCcCcEEEEEECChh-----hCcHHHHhcCEEEEecCCCHHHHHHHHHH
Confidence 45688888888877 68999999999999999999988877763
No 393
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.95 E-value=6e-09 Score=115.72 Aligned_cols=161 Identities=18% Similarity=0.282 Sum_probs=108.4
Q ss_pred CCCCccCChHHHHHHHHHhcc--CCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccccc----
Q 003094 195 KLDPVVGRQPQIERVVQILGR--RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGT---- 268 (848)
Q Consensus 195 ~ld~iiG~~~~~~~l~~~l~~--~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~---- 268 (848)
...+++|+...+++|.+.+.+ +...+|||+|++||||..+|++|.+.-... +.+++.+||+.+....
T Consensus 139 ~~~~liG~S~am~~l~~~i~kvA~s~a~VLI~GESGtGKElvAr~IH~~S~R~-------~~PFVavNcaAip~~l~ESE 211 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKVAPSDASVLITGESGTGKELVARAIHQASPRA-------KGPFIAVNCAAIPENLLESE 211 (464)
T ss_pred ccCCceecCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHhhCccc-------CCCceeeecccCCHHHHHHH
Confidence 456899999999999888765 677889999999999999999999866443 5679999997764210
Q ss_pred ---cccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCC-------------ceEEEEee
Q 003094 269 ---KYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARG-------------ELQCIGAT 332 (848)
Q Consensus 269 ---~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~-------------~v~vI~at 332 (848)
...|.|......-........++.||||||..| +.+++.-|+++++.+ .+.||++|
T Consensus 212 LFGhekGAFTGA~~~r~G~fE~A~GGTLfLDEI~~m--------pl~~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT 283 (464)
T COG2204 212 LFGHEKGAFTGAITRRIGRFEQANGGTLFLDEIGEM--------PLELQVKLLRVLQEREFERVGGNKPIKVDVRIIAAT 283 (464)
T ss_pred hhcccccCcCCcccccCcceeEcCCceEEeeccccC--------CHHHHHHHHHHHHcCeeEecCCCcccceeeEEEeec
Confidence 001111111111111233355679999999998 466888888888633 37899999
Q ss_pred ChHHHHh--hhhcChhhhcccCCCcCCCCCHHHHHHHHHH
Q 003094 333 TLDEYRK--HIEKDPALERRFQPVKVPEPSVDETIQILKG 370 (848)
Q Consensus 333 n~~~~~~--~~~~d~al~~Rf~~i~~~~p~~~e~~~Il~~ 370 (848)
|.+-... .-..-+.|.-|+.++.+..|...||.+=+-.
T Consensus 284 ~~dL~~~v~~G~FReDLyyRLnV~~i~iPpLRER~EDIp~ 323 (464)
T COG2204 284 NRDLEEEVAAGRFREDLYYRLNVVPLRLPPLRERKEDIPL 323 (464)
T ss_pred CcCHHHHHHcCCcHHHHHhhhccceecCCcccccchhHHH
Confidence 8753211 1112345555888888888877766654333
No 394
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.95 E-value=1.7e-10 Score=104.88 Aligned_cols=108 Identities=25% Similarity=0.296 Sum_probs=58.9
Q ss_pred CcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccccccccc---------hHHHHHHHHHHHHHhCCC
Q 003094 220 NPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRG---------EFEERLKKLMEEIKQSDE 290 (848)
Q Consensus 220 ~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~~~~g---------~~~~~l~~l~~~~~~~~~ 290 (848)
|+||.|+||+|||++|+++|+.+ +..+..+.+..-...++..| +++..-..++ .
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~----------~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif-------~ 63 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSL----------GLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIF-------T 63 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHT----------T--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT--------S
T ss_pred CEeeECCCccHHHHHHHHHHHHc----------CCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhh-------h
Confidence 68999999999999999999998 44555555432111111111 0000001111 1
Q ss_pred eEEEEcccchhhhCCCCCchHHHHHHHhhhhcC-------------CceEEEEeeChHHHHhhhhcChhhhcccC
Q 003094 291 IILFIDEVHTLIGAGAAEGAIDAANILKPSLAR-------------GELQCIGATTLDEYRKHIEKDPALERRFQ 352 (848)
Q Consensus 291 ~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~-------------~~v~vI~atn~~~~~~~~~~d~al~~Rf~ 352 (848)
.|+++||+++..++ .+..|++.++. ..++||+|.|+.++...+.++.++.+||.
T Consensus 64 ~ill~DEiNrappk--------tQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF~ 130 (131)
T PF07726_consen 64 NILLADEINRAPPK--------TQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRFM 130 (131)
T ss_dssp SEEEEETGGGS-HH--------HHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTSS
T ss_pred ceeeecccccCCHH--------HHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhcccc
Confidence 39999999998543 78888887752 33789999999998889999999999984
No 395
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=1e-08 Score=106.18 Aligned_cols=105 Identities=24% Similarity=0.396 Sum_probs=73.6
Q ss_pred CeEEEEcccchhhhCCCCCc----hHHHHHHHhhhhc------------CCceEEEEeeChHHHHhhhhcChhhhcccC-
Q 003094 290 EIILFIDEVHTLIGAGAAEG----AIDAANILKPSLA------------RGELQCIGATTLDEYRKHIEKDPALERRFQ- 352 (848)
Q Consensus 290 ~~IL~IDEid~l~~~~~~~~----~~~~~~~L~~~l~------------~~~v~vI~atn~~~~~~~~~~d~al~~Rf~- 352 (848)
..|+||||||.++..+...+ ...++.-|+++++ .+++.+|+++... ..+--++-|.|..||.
T Consensus 251 ~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh-~sKPSDLiPELQGRfPI 329 (444)
T COG1220 251 NGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFH-VAKPSDLIPELQGRFPI 329 (444)
T ss_pred cCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCcee-cCChhhcChhhcCCCce
Confidence 35999999999997654222 2246777788776 3458888877532 1122257799999998
Q ss_pred CCcCCCCCHHHHHHHHHH----HHHHHhh---hh--cCCCChHHHHHHHhhh
Q 003094 353 PVKVPEPSVDETIQILKG----LRERYEI---HH--KLRYTDEALVSAAQLS 395 (848)
Q Consensus 353 ~i~~~~p~~~e~~~Il~~----~~~~~~~---~~--~~~~s~~~l~~l~~~s 395 (848)
.|++..++.++...||.. +.++|.. .. .+.++++++..++..+
T Consensus 330 RVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA 381 (444)
T COG1220 330 RVELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIA 381 (444)
T ss_pred EEEcccCCHHHHHHHHcCcchHHHHHHHHHHhhcCeeEEecHHHHHHHHHHH
Confidence 899999999999999864 4444432 22 2357888888888765
No 396
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.93 E-value=1.4e-08 Score=103.01 Aligned_cols=115 Identities=24% Similarity=0.215 Sum_probs=84.8
Q ss_pred CeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCC-ceEEEEeeChH--------HHHhhhhcChhhhcccCCCcCCCCC
Q 003094 290 EIILFIDEVHTLIGAGAAEGAIDAANILKPSLARG-ELQCIGATTLD--------EYRKHIEKDPALERRFQPVKVPEPS 360 (848)
Q Consensus 290 ~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~-~v~vI~atn~~--------~~~~~~~~d~al~~Rf~~i~~~~p~ 360 (848)
|.+|||||+|.| +.+....|.+.++.. .-++|.++|+- +...-..+++.|+.|+-.|..-+++
T Consensus 297 PGVLFIDEVhML--------DiEcFTyL~kalES~iaPivifAsNrG~~~irGt~d~~sPhGip~dllDRl~Iirt~~y~ 368 (456)
T KOG1942|consen 297 PGVLFIDEVHML--------DIECFTYLHKALESPIAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLDRLLIIRTLPYD 368 (456)
T ss_pred CcceEeeehhhh--------hhHHHHHHHHHhcCCCCceEEEecCCcceeecCCcCCCCCCCCCHHHhhheeEEeeccCC
Confidence 789999999999 577888898888743 34666666642 2222345779999999999998999
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCChhhHHHHHHHHhhHHHH
Q 003094 361 VDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRL 421 (848)
Q Consensus 361 ~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~p~~a~~ll~~a~~~~~~ 421 (848)
.++..+|++...+ ..++.++++++..++.+.... .-+-++.||.-|...++.
T Consensus 369 ~~e~r~Ii~~Ra~----~E~l~~~e~a~~~l~~~gt~t-----sLRy~vqLl~p~~~~ak~ 420 (456)
T KOG1942|consen 369 EEEIRQIIKIRAQ----VEGLQVEEEALDLLAEIGTST-----SLRYAVQLLTPASILAKT 420 (456)
T ss_pred HHHHHHHHHHHHh----hhcceecHHHHHHHHhhccch-----hHHHHHHhcCHHHHHHHH
Confidence 9999999998776 578889999999988754332 223467777666555544
No 397
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.92 E-value=2.4e-08 Score=115.97 Aligned_cols=176 Identities=21% Similarity=0.286 Sum_probs=113.5
Q ss_pred CCCCccCChHHHHHHHHHhcc--CCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccccccccc
Q 003094 195 KLDPVVGRQPQIERVVQILGR--RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRG 272 (848)
Q Consensus 195 ~ld~iiG~~~~~~~l~~~l~~--~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~~~~g 272 (848)
..+.++|+...++++.+.+.. ....++||+|++||||+++|++|...... .+.+++.+||..+...
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r-------~~~p~v~v~c~~~~~~----- 252 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPR-------ADKPLVYLNCAALPES----- 252 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCCc-------CCCCeEEEEcccCChH-----
Confidence 456799999999888777654 56778999999999999999999987543 2567999999876421
Q ss_pred hHHHHHHHHHH---------------HHHhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCC-------------
Q 003094 273 EFEERLKKLME---------------EIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARG------------- 324 (848)
Q Consensus 273 ~~~~~l~~l~~---------------~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~------------- 324 (848)
..+ ..+|. ......+..|||||++.|. .+.+..|..+++.+
T Consensus 253 ~~e---~~lfG~~~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L~--------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~ 321 (509)
T PRK05022 253 LAE---SELFGHVKGAFTGAISNRSGKFELADGGTLFLDEIGELP--------LALQAKLLRVLQYGEIQRVGSDRSLRV 321 (509)
T ss_pred HHH---HHhcCccccccCCCcccCCcchhhcCCCEEEecChhhCC--------HHHHHHHHHHHhcCCEeeCCCCcceec
Confidence 001 01111 1223445689999999994 45777777777543
Q ss_pred ceEEEEeeChHHHH--hhhhcChhhhcccCCCcCCCCCHHHHHH----HHHHHHHHHhhh---hcCCCChHHHHHHHh
Q 003094 325 ELQCIGATTLDEYR--KHIEKDPALERRFQPVKVPEPSVDETIQ----ILKGLRERYEIH---HKLRYTDEALVSAAQ 393 (848)
Q Consensus 325 ~v~vI~atn~~~~~--~~~~~d~al~~Rf~~i~~~~p~~~e~~~----Il~~~~~~~~~~---~~~~~s~~~l~~l~~ 393 (848)
.+.+|++|+..-.. ..-...+.|..|+..+.|..|+..+|.+ +++.++.++... ....++++++..+..
T Consensus 322 ~~RiI~~t~~~l~~~~~~~~f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~ 399 (509)
T PRK05022 322 DVRVIAATNRDLREEVRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLA 399 (509)
T ss_pred ceEEEEecCCCHHHHHHcCCccHHHHhcccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHh
Confidence 46899998865321 1113456677788766666666655544 344444443322 224566666655544
No 398
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.91 E-value=1.4e-07 Score=100.70 Aligned_cols=182 Identities=18% Similarity=0.178 Sum_probs=106.4
Q ss_pred CCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCccc-----------ccccccch----HHHHHHHH
Q 003094 217 TKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLV-----------AGTKYRGE----FEERLKKL 281 (848)
Q Consensus 217 ~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~-----------~~~~~~g~----~~~~l~~l 281 (848)
....++|+||+|+|||++++.+++.+..+.+ .+..+...... .|.+..+. ....+...
T Consensus 42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~-------~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~ 114 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRLDQERV-------VAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDF 114 (269)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHhcCCCCe-------EEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHH
Confidence 3446789999999999999999998753211 11111100000 01111111 11222222
Q ss_pred H-HHHHhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhc-----CCceEEEEeeChHHHHhhhhc--ChhhhcccC-
Q 003094 282 M-EEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLA-----RGELQCIGATTLDEYRKHIEK--DPALERRFQ- 352 (848)
Q Consensus 282 ~-~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~-----~~~v~vI~atn~~~~~~~~~~--d~al~~Rf~- 352 (848)
+ .....+.+.+|+|||+|.+.. +..+.|+.+.+ ...+.++.++.+ +....+.. ...+.+|+.
T Consensus 115 l~~~~~~~~~~vliiDe~~~l~~--------~~~~~l~~l~~~~~~~~~~~~vvl~g~~-~~~~~l~~~~~~~l~~r~~~ 185 (269)
T TIGR03015 115 LIEQFAAGKRALLVVDEAQNLTP--------ELLEELRMLSNFQTDNAKLLQIFLVGQP-EFRETLQSPQLQQLRQRIIA 185 (269)
T ss_pred HHHHHhCCCCeEEEEECcccCCH--------HHHHHHHHHhCcccCCCCeEEEEEcCCH-HHHHHHcCchhHHHHhheee
Confidence 2 223356678999999999842 23344433332 223445555544 33333321 235777864
Q ss_pred CCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCChhhHHHHHHHHhhHHH
Q 003094 353 PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVR 420 (848)
Q Consensus 353 ~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~p~~a~~ll~~a~~~~~ 420 (848)
.+.+++++.++..+++...+..........+++++++.+.+.+.|+. .....+++.+...+.
T Consensus 186 ~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p------~~i~~l~~~~~~~a~ 247 (269)
T TIGR03015 186 SCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIP------RLINILCDRLLLSAF 247 (269)
T ss_pred eeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcc------cHHHHHHHHHHHHHH
Confidence 88999999999999998887754333345689999999999998864 345555565544433
No 399
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.91 E-value=4e-08 Score=116.59 Aligned_cols=162 Identities=15% Similarity=0.114 Sum_probs=100.8
Q ss_pred CCccCChHHHHHHHHHhccCC---------------------CCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCce
Q 003094 197 DPVVGRQPQIERVVQILGRRT---------------------KNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKK 255 (848)
Q Consensus 197 d~iiG~~~~~~~l~~~l~~~~---------------------~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~ 255 (848)
..|.|++.+++.++-.|-... ..|+||+|+||||||.+++.+++...... ...|..
T Consensus 450 P~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~---ytsG~~ 526 (915)
T PTZ00111 450 PSIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSI---YTSGKS 526 (915)
T ss_pred CeEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccc---cCCCCC
Confidence 358899998887655553221 12899999999999999999998543221 112233
Q ss_pred EEEEeCCcccc-cccccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCC----------
Q 003094 256 VITLDMGLLVA-GTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARG---------- 324 (848)
Q Consensus 256 v~~~~~~~l~~-~~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~---------- 324 (848)
...+++..... .....|++.... ..+..+..++++|||++.+. ...+..|..+|+.+
T Consensus 527 ~s~vgLTa~~~~~d~~tG~~~le~----GaLvlAdgGtL~IDEidkms--------~~~Q~aLlEaMEqqtIsI~KaGi~ 594 (915)
T PTZ00111 527 SSSVGLTASIKFNESDNGRAMIQP----GAVVLANGGVCCIDELDKCH--------NESRLSLYEVMEQQTVTIAKAGIV 594 (915)
T ss_pred CccccccchhhhcccccCcccccC----CcEEEcCCCeEEecchhhCC--------HHHHHHHHHHHhCCEEEEecCCcc
Confidence 33333332211 000011110000 11122445699999999984 34667777777533
Q ss_pred -----ceEEEEeeChHHHH--------hhhhcChhhhcccC--CCcCCCCCHHHHHHHHHHHHH
Q 003094 325 -----ELQCIGATTLDEYR--------KHIEKDPALERRFQ--PVKVPEPSVDETIQILKGLRE 373 (848)
Q Consensus 325 -----~v~vI~atn~~~~~--------~~~~~d~al~~Rf~--~i~~~~p~~~e~~~Il~~~~~ 373 (848)
.+.||+++|+...+ .-+.+++++++||+ .+.++.|+.+.-..|...++.
T Consensus 595 ~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLIf~l~D~~d~~~D~~lA~hI~~ 658 (915)
T PTZ00111 595 ATLKAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQDTDQLISLSIAK 658 (915)
T ss_pred eecCCCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcEEEEecCCCChHHHHHHHHHHHH
Confidence 47899999986432 34678899999998 567888888876666666554
No 400
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=98.91 E-value=3.9e-09 Score=95.88 Aligned_cols=109 Identities=23% Similarity=0.401 Sum_probs=76.6
Q ss_pred HHHHHHHHhhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCC--CCceEEeccc
Q 003094 521 RLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGS--EEAMIRLDMS 598 (848)
Q Consensus 521 ~l~~l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~--~~~~i~i~~~ 598 (848)
+...|+..|.+.++||.-+.+.|.++++..... ..|++|+. +.|+||||||||.+++.||+.+|.. +.+++..=.+
T Consensus 15 ~~~~L~~~L~~~l~GQhla~~~v~~ai~~~l~~-~~p~KpLV-lSfHG~tGtGKn~v~~liA~~ly~~G~~S~~V~~f~~ 92 (127)
T PF06309_consen 15 NITGLEKDLQRNLFGQHLAVEVVVNAIKGHLAN-PNPRKPLV-LSFHGWTGTGKNFVSRLIAEHLYKSGMKSPFVHQFIA 92 (127)
T ss_pred CHHHHHHHHHHHccCcHHHHHHHHHHHHHHHcC-CCCCCCEE-EEeecCCCCcHHHHHHHHHHHHHhcccCCCceeeecc
Confidence 466788899999999999999999999988654 57888876 7899999999999999999998754 4555543332
Q ss_pred ccccccchhcccCCCCCCcccc--cccchhHHHHcCCCeEEEE
Q 003094 599 EFMERHTVSKLIGSPPGYVGYT--EGGQLTEAVRRRPYTVVLF 639 (848)
Q Consensus 599 ~~~~~~~~~~l~g~~~g~~g~~--~~~~l~~~~~~~~~~Vl~l 639 (848)
...-++.. .-..|. -...+.+.+..++.++++|
T Consensus 93 ~~hFP~~~--------~v~~Yk~~L~~~I~~~v~~C~rslFIF 127 (127)
T PF06309_consen 93 THHFPHNS--------NVDEYKEQLKSWIRGNVSRCPRSLFIF 127 (127)
T ss_pred cccCCCch--------HHHHHHHHHHHHHHHHHHhCCcCeeeC
Confidence 22111100 000111 1144566777888888765
No 401
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.90 E-value=1.6e-08 Score=99.13 Aligned_cols=114 Identities=22% Similarity=0.352 Sum_probs=77.8
Q ss_pred ccCChHHHHHHHHHhcc--CCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccccccccchHHH
Q 003094 199 VVGRQPQIERVVQILGR--RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEE 276 (848)
Q Consensus 199 iiG~~~~~~~l~~~l~~--~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~~~~g~~~~ 276 (848)
+||.+..++++.+.+.. ....+|||+|++||||+.+|++|.+.... .+.+++.++|+.+... .
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r-------~~~pfi~vnc~~~~~~--------~ 65 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNSPR-------KNGPFISVNCAALPEE--------L 65 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCSTT-------TTS-EEEEETTTS-HH--------H
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhhc-------ccCCeEEEehhhhhcc--------h
Confidence 57888888888776654 56689999999999999999999985432 2578999999876421 0
Q ss_pred HHHHHH---------------HHHHhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCC-------------ceEE
Q 003094 277 RLKKLM---------------EEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARG-------------ELQC 328 (848)
Q Consensus 277 ~l~~l~---------------~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~-------------~v~v 328 (848)
.-..+| ..+....+.+|||||++.|. .+++..|..+++.+ .+.+
T Consensus 66 ~e~~LFG~~~~~~~~~~~~~~G~l~~A~~GtL~Ld~I~~L~--------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~Ri 137 (168)
T PF00158_consen 66 LESELFGHEKGAFTGARSDKKGLLEQANGGTLFLDEIEDLP--------PELQAKLLRVLEEGKFTRLGSDKPVPVDVRI 137 (168)
T ss_dssp HHHHHHEBCSSSSTTTSSEBEHHHHHTTTSEEEEETGGGS---------HHHHHHHHHHHHHSEEECCTSSSEEE--EEE
T ss_pred hhhhhhccccccccccccccCCceeeccceEEeecchhhhH--------HHHHHHHHHHHhhchhccccccccccccceE
Confidence 111222 22233556699999999994 45788888888632 4899
Q ss_pred EEeeChH
Q 003094 329 IGATTLD 335 (848)
Q Consensus 329 I~atn~~ 335 (848)
|++|+.+
T Consensus 138 I~st~~~ 144 (168)
T PF00158_consen 138 IASTSKD 144 (168)
T ss_dssp EEEESS-
T ss_pred EeecCcC
Confidence 9999864
No 402
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.89 E-value=2.2e-08 Score=120.12 Aligned_cols=177 Identities=18% Similarity=0.280 Sum_probs=113.8
Q ss_pred CCCCCccCChHHHHHHHHHhcc--CCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCccccccccc
Q 003094 194 GKLDPVVGRQPQIERVVQILGR--RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYR 271 (848)
Q Consensus 194 ~~ld~iiG~~~~~~~l~~~l~~--~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~~~~ 271 (848)
..|++++|....++++.+.+.. ....++||+|++||||+++|++|.+.... .+.+++.+||..+...
T Consensus 322 ~~~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r-------~~~pfv~vnc~~~~~~---- 390 (638)
T PRK11388 322 HTFDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESER-------AAGPYIAVNCQLYPDE---- 390 (638)
T ss_pred ccccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhCCc-------cCCCeEEEECCCCChH----
Confidence 3689999999999887776654 55677999999999999999999886543 2467999999876421
Q ss_pred chHHHHHHHHHH------------HHHhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCC-------------ce
Q 003094 272 GEFEERLKKLME------------EIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARG-------------EL 326 (848)
Q Consensus 272 g~~~~~l~~l~~------------~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~-------------~v 326 (848)
.. -..+|. ......+.+|||||++.|. .+.+..|..+++.+ .+
T Consensus 391 -~~---~~elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~l~--------~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~ 458 (638)
T PRK11388 391 -AL---AEEFLGSDRTDSENGRLSKFELAHGGTLFLEKVEYLS--------PELQSALLQVLKTGVITRLDSRRLIPVDV 458 (638)
T ss_pred -HH---HHHhcCCCCcCccCCCCCceeECCCCEEEEcChhhCC--------HHHHHHHHHHHhcCcEEeCCCCceEEeeE
Confidence 00 112222 1223446799999999994 55788888877643 36
Q ss_pred EEEEeeChHHHH--hhhhcChhhhcccCCCcCCCCCHHHHHH----HHHHHHHHHhhhh--cCCCChHHHHHHHh
Q 003094 327 QCIGATTLDEYR--KHIEKDPALERRFQPVKVPEPSVDETIQ----ILKGLRERYEIHH--KLRYTDEALVSAAQ 393 (848)
Q Consensus 327 ~vI~atn~~~~~--~~~~~d~al~~Rf~~i~~~~p~~~e~~~----Il~~~~~~~~~~~--~~~~s~~~l~~l~~ 393 (848)
.+|++|+..... ..-...+.|.-|+..+.+..|+..+|.+ +++.++.++.... .+.++++++..+..
T Consensus 459 riI~~t~~~l~~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~ 533 (638)
T PRK11388 459 RVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVS 533 (638)
T ss_pred EEEEeccCCHHHHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHc
Confidence 789988865321 1112345566677766666666665543 3444444432211 23456666655544
No 403
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.89 E-value=7.3e-09 Score=106.67 Aligned_cols=133 Identities=14% Similarity=0.079 Sum_probs=87.0
Q ss_pred ceEEEeecCCcchHHHHHHHHHHHhcCCCCc--eE-Eecccccccc-cchhcccCCCCCCcccccccchhHHHHc-----
Q 003094 561 IASFIFSGPTGVGKSELAKALAAYYFGSEEA--MI-RLDMSEFMER-HTVSKLIGSPPGYVGYTEGGQLTEAVRR----- 631 (848)
Q Consensus 561 ~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~--~i-~i~~~~~~~~-~~~~~l~g~~~g~~g~~~~~~l~~~~~~----- 631 (848)
.+.+||+||+|+||..+|..+|+.+.+.+.. +- +-.|..+... |..-.++.......+.++.+.+.+.+..
T Consensus 7 ~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~e~ 86 (261)
T PRK05818 7 THPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSVES 86 (261)
T ss_pred CcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCchhc
Confidence 3469999999999999999999999765422 11 0112222111 1111111111111222222333333322
Q ss_pred CCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHH
Q 003094 632 RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRI 711 (848)
Q Consensus 632 ~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~ 711 (848)
+++.|++||++|+++..+.|.||+.+|+ ++.+++||++|+....
T Consensus 87 ~~~KV~II~~ae~m~~~AaNaLLK~LEE-----------Pp~~t~fiLit~~~~~------------------------- 130 (261)
T PRK05818 87 NGKKIYIIYGIEKLNKQSANSLLKLIEE-----------PPKNTYGIFTTRNENN------------------------- 130 (261)
T ss_pred CCCEEEEeccHhhhCHHHHHHHHHhhcC-----------CCCCeEEEEEECChHh-------------------------
Confidence 3468999999999999999999999998 4579999999974433
Q ss_pred HHHHHHHHHhhcChhhhhccCeEEEcCCCC
Q 003094 712 KSLVTEELKQYFRPEFLNRLDEMIVFRQLT 741 (848)
Q Consensus 712 ~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~ 741 (848)
+.|.+++|| +.+.|+++.
T Consensus 131 -----------lLpTI~SRC-q~~~~~~~~ 148 (261)
T PRK05818 131 -----------ILNTILSRC-VQYVVLSKE 148 (261)
T ss_pred -----------CchHhhhhe-eeeecCChh
Confidence 458899999 788888873
No 404
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.88 E-value=3.5e-08 Score=106.18 Aligned_cols=149 Identities=15% Similarity=0.122 Sum_probs=105.2
Q ss_pred hHHHHHHHHHhccCCCCC-cEEECCCCCcHHHHHHHHHHHhhCCCCCC-------------CCCCceEEEEeCCcccccc
Q 003094 203 QPQIERVVQILGRRTKNN-PCLIGEPGVGKTAIAEGLAQRIASGDVPD-------------TIEGKKVITLDMGLLVAGT 268 (848)
Q Consensus 203 ~~~~~~l~~~l~~~~~~~-iLL~GppGtGKT~la~~la~~l~~~~~~~-------------~l~~~~v~~~~~~~l~~~~ 268 (848)
.+..+++...+......| +||+||.|+||+++|+.+|+.+.+..... ...+.+++.+....- +
T Consensus 9 ~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~---~ 85 (319)
T PRK06090 9 VPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKE---G 85 (319)
T ss_pred HHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcC---C
Confidence 345567777777666666 67889999999999999999998754211 112344555543210 1
Q ss_pred cccchHHHHHHHHHHHHH----hCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhc--CCceEEEEeeChHHHHhhhh
Q 003094 269 KYRGEFEERLKKLMEEIK----QSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLA--RGELQCIGATTLDEYRKHIE 342 (848)
Q Consensus 269 ~~~g~~~~~l~~l~~~~~----~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~--~~~v~vI~atn~~~~~~~~~ 342 (848)
+.. ..+.++.+.+.+. .++..|++||++|.|. ....|.|++.+| ..++.+|.+|+.++ .
T Consensus 86 ~~I--~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~--------~~AaNaLLKtLEEPp~~t~fiL~t~~~~-----~ 150 (319)
T PRK06090 86 KSI--TVEQIRQCNRLAQESSQLNGYRLFVIEPADAMN--------ESASNALLKTLEEPAPNCLFLLVTHNQK-----R 150 (319)
T ss_pred CcC--CHHHHHHHHHHHhhCcccCCceEEEecchhhhC--------HHHHHHHHHHhcCCCCCeEEEEEECChh-----h
Confidence 111 1233444444442 3456799999999994 458999999998 45578888887776 6
Q ss_pred cChhhhcccCCCcCCCCCHHHHHHHHH
Q 003094 343 KDPALERRFQPVKVPEPSVDETIQILK 369 (848)
Q Consensus 343 ~d~al~~Rf~~i~~~~p~~~e~~~Il~ 369 (848)
+.|.++|||+.+.|++|+.++..+.+.
T Consensus 151 lLpTI~SRCq~~~~~~~~~~~~~~~L~ 177 (319)
T PRK06090 151 LLPTIVSRCQQWVVTPPSTAQAMQWLK 177 (319)
T ss_pred ChHHHHhcceeEeCCCCCHHHHHHHHH
Confidence 899999999999999999998877665
No 405
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.87 E-value=2.9e-08 Score=108.46 Aligned_cols=165 Identities=21% Similarity=0.299 Sum_probs=108.2
Q ss_pred CCCCCccCChHHHHHHHHHhcc--CCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCccccccccc
Q 003094 194 GKLDPVVGRQPQIERVVQILGR--RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYR 271 (848)
Q Consensus 194 ~~ld~iiG~~~~~~~l~~~l~~--~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~~~~ 271 (848)
..++++||....++++.+.+.. +...++|++|++||||+.+|+.|...-.. . ...+++.+||+.+....-
T Consensus 75 ~~~~~LIG~~~~~~~~~eqik~~ap~~~~vLi~GetGtGKel~A~~iH~~s~r-~-----~~~PFI~~NCa~~~en~~-- 146 (403)
T COG1221 75 EALDDLIGESPSLQELREQIKAYAPSGLPVLIIGETGTGKELFARLIHALSAR-R-----AEAPFIAFNCAAYSENLQ-- 146 (403)
T ss_pred hhhhhhhccCHHHHHHHHHHHhhCCCCCcEEEecCCCccHHHHHHHHHHhhhc-c-----cCCCEEEEEHHHhCcCHH--
Confidence 3477899999999888887765 55678999999999999999999943322 1 367899999988764311
Q ss_pred chHHHHHHHHHHH---------------HHhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCC------------
Q 003094 272 GEFEERLKKLMEE---------------IKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARG------------ 324 (848)
Q Consensus 272 g~~~~~l~~l~~~---------------~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~------------ 324 (848)
...+|.- ....++.+||+|||+.|.+ ..+..|..+++.+
T Consensus 147 ------~~eLFG~~kGaftGa~~~k~Glfe~A~GGtLfLDEI~~LP~--------~~Q~kLl~~le~g~~~rvG~~~~~~ 212 (403)
T COG1221 147 ------EAELFGHEKGAFTGAQGGKAGLFEQANGGTLFLDEIHRLPP--------EGQEKLLRVLEEGEYRRVGGSQPRP 212 (403)
T ss_pred ------HHHHhccccceeecccCCcCchheecCCCEEehhhhhhCCH--------hHHHHHHHHHHcCceEecCCCCCcC
Confidence 1112221 1234567999999999954 4677888887643
Q ss_pred -ceEEEEeeChHHHHhhhhcChhhhcccCCCcCCCCCHHHHHH----HHHHHHHHHhhhhcC
Q 003094 325 -ELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQ----ILKGLRERYEIHHKL 381 (848)
Q Consensus 325 -~v~vI~atn~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~----Il~~~~~~~~~~~~~ 381 (848)
.+.+|++||..--...+.- ..+.+|...+.+..|+..+|.. +++.++..+....+.
T Consensus 213 ~dVRli~AT~~~l~~~~~~g-~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~ 273 (403)
T COG1221 213 VDVRLICATTEDLEEAVLAG-ADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRLGL 273 (403)
T ss_pred CCceeeeccccCHHHHHHhh-cchhhhhcCceecCCChhhchhhHHHHHHHHHHHHHHHcCC
Confidence 3789999987553322211 3666666655566666655543 344444444333333
No 406
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=1e-09 Score=119.81 Aligned_cols=123 Identities=24% Similarity=0.334 Sum_probs=80.6
Q ss_pred CCCCccCChHHHHHHHHHhccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeC-------------
Q 003094 195 KLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDM------------- 261 (848)
Q Consensus 195 ~ld~iiG~~~~~~~l~~~l~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~------------- 261 (848)
.|.|++|++..++.+... .....|+|++||||||||++|+.+...+.....++.+.-..+.+++.
T Consensus 177 D~~DV~GQ~~AKrAleiA--AAGgHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~g~~~~~~~~~~~rP 254 (490)
T COG0606 177 DFKDVKGQEQAKRALEIA--AAGGHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLAGDLHEGCPLKIHRP 254 (490)
T ss_pred chhhhcCcHHHHHHHHHH--HhcCCcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhcccccccCccceeCC
Confidence 678999999999988543 44679999999999999999999887765433322222222222221
Q ss_pred ----------CcccccccccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCCc------
Q 003094 262 ----------GLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGE------ 325 (848)
Q Consensus 262 ----------~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~~------ 325 (848)
..+.+|+. ...-.++......||||||+-.+ ...+.+.|+.-||+++
T Consensus 255 Fr~PHHsaS~~aLvGGG~---------~p~PGeIsLAH~GVLFLDElpef--------~~~iLe~LR~PLE~g~i~IsRa 317 (490)
T COG0606 255 FRAPHHSASLAALVGGGG---------VPRPGEISLAHNGVLFLDELPEF--------KRSILEALREPLENGKIIISRA 317 (490)
T ss_pred ccCCCccchHHHHhCCCC---------CCCCCceeeecCCEEEeeccchh--------hHHHHHHHhCccccCcEEEEEc
Confidence 11111110 00012233445679999999887 3468999999998665
Q ss_pred ---------eEEEEeeChHH
Q 003094 326 ---------LQCIGATTLDE 336 (848)
Q Consensus 326 ---------v~vI~atn~~~ 336 (848)
+++|++||+..
T Consensus 318 ~~~v~ypa~Fqlv~AmNpcp 337 (490)
T COG0606 318 GSKVTYPARFQLVAAMNPCP 337 (490)
T ss_pred CCeeEEeeeeEEhhhcCCCC
Confidence 67788888654
No 407
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.85 E-value=7.2e-08 Score=113.18 Aligned_cols=137 Identities=22% Similarity=0.259 Sum_probs=87.5
Q ss_pred CCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccccccccchH--HHHHHH---HH--HHHHhC
Q 003094 216 RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEF--EERLKK---LM--EEIKQS 288 (848)
Q Consensus 216 ~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~~~~g~~--~~~l~~---l~--~~~~~~ 288 (848)
+...++||.|+||||||++++.+++.+... .+++.+..+... ....|.. +..+.. .+ ..+...
T Consensus 14 p~~g~vLl~G~~GtgKs~lar~l~~~~~~~--------~pfv~i~~~~t~--d~L~G~idl~~~~~~g~~~~~~G~L~~A 83 (589)
T TIGR02031 14 PSLGGVAIRARAGTGKTALARALAEILPPI--------MPFVELPLGVTE--DRLIGGIDVEESLAGGQRVTQPGLLDEA 83 (589)
T ss_pred CCcceEEEEcCCCcHHHHHHHHHHHhCCcC--------CCeEecCcccch--hhcccchhhhhhhhcCcccCCCCCeeeC
Confidence 446789999999999999999999977431 234444432111 1111111 000000 00 001123
Q ss_pred CCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCC---------------ceEEEEeeChHHHHhhhhcChhhhcccC-
Q 003094 289 DEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARG---------------ELQCIGATTLDEYRKHIEKDPALERRFQ- 352 (848)
Q Consensus 289 ~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~---------------~v~vI~atn~~~~~~~~~~d~al~~Rf~- 352 (848)
++.+|||||++.+. ...++.|...|+.+ .+.+|+++|+.+.. -.+.+++..||.
T Consensus 84 ~~GvL~lDEi~rl~--------~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~--g~L~~~LldRf~l 153 (589)
T TIGR02031 84 PRGVLYVDMANLLD--------DGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGG--GGLPDHLLDRLAL 153 (589)
T ss_pred CCCcEeccchhhCC--------HHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCcccc--CCCCHHHHHhccC
Confidence 45699999999994 45788888888644 37899988887522 267899999997
Q ss_pred CCcC-CCCCHHHHHHHHHHHH
Q 003094 353 PVKV-PEPSVDETIQILKGLR 372 (848)
Q Consensus 353 ~i~~-~~p~~~e~~~Il~~~~ 372 (848)
.|.+ ..|+.+++.+|++...
T Consensus 154 ~v~~~~~~~~~er~eil~~~~ 174 (589)
T TIGR02031 154 HVSLEDVASQDLRVEIVRRER 174 (589)
T ss_pred eeecCCCCCHHHHHHHHHHHH
Confidence 4444 4567788889888755
No 408
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.83 E-value=6.6e-08 Score=112.40 Aligned_cols=182 Identities=16% Similarity=0.222 Sum_probs=111.2
Q ss_pred cCCCCCccCChHHHHHHHHHhcc--CCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccccc--
Q 003094 193 EGKLDPVVGRQPQIERVVQILGR--RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGT-- 268 (848)
Q Consensus 193 ~~~ld~iiG~~~~~~~l~~~l~~--~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~-- 268 (848)
...|++++|....++++.+.+.. ....+++|+|++||||+++|+++...... ...+++.+||+.+....
T Consensus 200 ~~~f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r-------~~~pfv~inca~~~~~~~e 272 (520)
T PRK10820 200 DSAFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRSPR-------GKKPFLALNCASIPDDVVE 272 (520)
T ss_pred cccccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHhCCC-------CCCCeEEeccccCCHHHHH
Confidence 35799999999988887776643 46677999999999999999998765432 24678999998764210
Q ss_pred ---------cccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCC-------------ce
Q 003094 269 ---------KYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARG-------------EL 326 (848)
Q Consensus 269 ---------~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~-------------~v 326 (848)
.+.+..+. -..+|+ ...+..|||||++.|. ...+..|..+++.+ .+
T Consensus 273 ~elFG~~~~~~~~~~~~-~~g~~e---~a~~GtL~LdeI~~L~--------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~v 340 (520)
T PRK10820 273 SELFGHAPGAYPNALEG-KKGFFE---QANGGSVLLDEIGEMS--------PRMQAKLLRFLNDGTFRRVGEDHEVHVDV 340 (520)
T ss_pred HHhcCCCCCCcCCcccC-CCChhh---hcCCCEEEEeChhhCC--------HHHHHHHHHHHhcCCcccCCCCcceeeee
Confidence 00000000 001122 2345689999999994 44677777777543 36
Q ss_pred EEEEeeChHHH--HhhhhcChhhhcccCCCcCCCCCHHHHH----HHHHHHHHHHhhhhc---CCCChHHHHHHHh
Q 003094 327 QCIGATTLDEY--RKHIEKDPALERRFQPVKVPEPSVDETI----QILKGLRERYEIHHK---LRYTDEALVSAAQ 393 (848)
Q Consensus 327 ~vI~atn~~~~--~~~~~~d~al~~Rf~~i~~~~p~~~e~~----~Il~~~~~~~~~~~~---~~~s~~~l~~l~~ 393 (848)
.+|++|+.+-. ...-...+.|..|+..+.+..|+..+|. .++..++.++....+ ..++++++..+..
T Consensus 341 RiI~st~~~l~~l~~~g~f~~dL~~rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~~~L~~ 416 (520)
T PRK10820 341 RVICATQKNLVELVQKGEFREDLYYRLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTR 416 (520)
T ss_pred EEEEecCCCHHHHHHcCCccHHHHhhcCeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHhc
Confidence 78888765431 1111245667788875555555555544 334444444433322 2466666655543
No 409
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.82 E-value=7e-08 Score=104.30 Aligned_cols=163 Identities=24% Similarity=0.298 Sum_probs=106.5
Q ss_pred CCCccCChHHHHHHHHHhccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEE----------------E
Q 003094 196 LDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVIT----------------L 259 (848)
Q Consensus 196 ld~iiG~~~~~~~l~~~l~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~----------------~ 259 (848)
|.-++|++.....|..---.+...++||.|+.|+||||++|+|+.-|....+. .|+++-. -
T Consensus 16 f~aivGqd~lk~aL~l~av~P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V---~gc~f~cdP~~P~~~c~~c~~k~~ 92 (423)
T COG1239 16 FTAIVGQDPLKLALGLNAVDPQIGGALIAGEKGTAKSTLARALADLLPEIEVV---IGCPFNCDPDDPEEMCDECRAKGD 92 (423)
T ss_pred hhhhcCchHHHHHHhhhhcccccceeEEecCCCccHHHHHHHHHHhCCcccee---cCCCCCCCCCChhhhhHHHHhhcc
Confidence 44589999988887666556778899999999999999999999988643210 1111000 0
Q ss_pred eCCccccc-------ccccchHHHHH------HHHHH---------HHHhCCCeEEEEcccchhhhCCCCCchHHHHHHH
Q 003094 260 DMGLLVAG-------TKYRGEFEERL------KKLME---------EIKQSDEIILFIDEVHTLIGAGAAEGAIDAANIL 317 (848)
Q Consensus 260 ~~~~l~~~-------~~~~g~~~~~l------~~l~~---------~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L 317 (848)
+...+... ....+.++.++ .+.++ .+.+.+..||||||++.| ...+++.|
T Consensus 93 e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL--------~d~lvd~L 164 (423)
T COG1239 93 ELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLL--------DDHLVDAL 164 (423)
T ss_pred ccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccc--------cHHHHHHH
Confidence 00000000 00112222211 11111 111344679999999999 34588999
Q ss_pred hhhhcCC---------------ceEEEEeeChHHHHhhhhcChhhhcccC-CCcCCC-CCHHHHHHHHHHHHH
Q 003094 318 KPSLARG---------------ELQCIGATTLDEYRKHIEKDPALERRFQ-PVKVPE-PSVDETIQILKGLRE 373 (848)
Q Consensus 318 ~~~l~~~---------------~v~vI~atn~~~~~~~~~~d~al~~Rf~-~i~~~~-p~~~e~~~Il~~~~~ 373 (848)
+..++.| ++++|+|+|+.+- ++-|.|+.||. .|.+.. .+.+++.+|++....
T Consensus 165 Ld~aaeG~n~vereGisi~hpa~fvligTmNPEeG----eLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~~~ 233 (423)
T COG1239 165 LDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEG----ELRPQLLDRFGLEVDTHYPLDLEERVEIIRRRLA 233 (423)
T ss_pred HHHHHhCCceeeeCceeeccCccEEEEeecCcccc----ccchhhHhhhcceeeccCCCCHHHHHHHHHHHHH
Confidence 8888643 3899999999875 78999999996 676655 467889998887654
No 410
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.80 E-value=2.5e-07 Score=100.33 Aligned_cols=205 Identities=20% Similarity=0.252 Sum_probs=128.1
Q ss_pred CCCccCChHHHHHHHHHh----ccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCccccccc--
Q 003094 196 LDPVVGRQPQIERVVQIL----GRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTK-- 269 (848)
Q Consensus 196 ld~iiG~~~~~~~l~~~l----~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~~-- 269 (848)
-..++|++.++..+.+++ ..+....+.+.|-||+|||.....+...+.. ......+++++|..+...+.
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~-----~~~~~~~v~inc~sl~~~~aiF 223 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSK-----SSKSPVTVYINCTSLTEASAIF 223 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhh-----hcccceeEEEeeccccchHHHH
Confidence 356899999999887775 4577788999999999999988877666533 22334567888876443211
Q ss_pred ------------ccchHHHHHHHHHHHHHhC-CCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCCceEEEEeeChHH
Q 003094 270 ------------YRGEFEERLKKLMEEIKQS-DEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATTLDE 336 (848)
Q Consensus 270 ------------~~g~~~~~l~~l~~~~~~~-~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~atn~~~ 336 (848)
..+........+-.-.... ...++++||+|.|...+.. .-..-..++.+-..++++||.+|..+
T Consensus 224 ~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~---vLy~lFewp~lp~sr~iLiGiANslD 300 (529)
T KOG2227|consen 224 KKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQT---VLYTLFEWPKLPNSRIILIGIANSLD 300 (529)
T ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccc---eeeeehhcccCCcceeeeeeehhhhh
Confidence 0011111111111222222 4789999999999743211 00111222334467899999999988
Q ss_pred HHhhhhcChhhhcccC----CCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCChhhHHHHH
Q 003094 337 YRKHIEKDPALERRFQ----PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLI 412 (848)
Q Consensus 337 ~~~~~~~d~al~~Rf~----~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~p~~a~~ll 412 (848)
+.+.+ -|.|..|.. .+.|++++.+|..+|+...+.. .....+-+.++..+++...+-.++ -++|.+++
T Consensus 301 lTdR~--LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~---~~t~~~~~~Aie~~ArKvaa~SGD---lRkaLdv~ 372 (529)
T KOG2227|consen 301 LTDRF--LPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSE---ESTSIFLNAAIELCARKVAAPSGD---LRKALDVC 372 (529)
T ss_pred HHHHH--hhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhc---ccccccchHHHHHHHHHhccCchh---HHHHHHHH
Confidence 65433 345555442 6899999999999999976653 233344456777777766665555 44566666
Q ss_pred HHHh
Q 003094 413 DEAG 416 (848)
Q Consensus 413 ~~a~ 416 (848)
+.|.
T Consensus 373 R~ai 376 (529)
T KOG2227|consen 373 RRAI 376 (529)
T ss_pred HHHH
Confidence 6554
No 411
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.79 E-value=7.6e-08 Score=102.85 Aligned_cols=147 Identities=13% Similarity=0.189 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhcccCCCCC-Cc
Q 003094 539 AVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPG-YV 617 (848)
Q Consensus 539 ~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g-~~ 617 (848)
+++.+.+.++..+ -.+.+||+|+.|.||+++|+.+++.+++....- ++.... +.... ++ .+.| ..
T Consensus 4 ~~~~l~~~i~~~~--------l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~--~~~~~~--p~n~~-~~-d~~g~~i 69 (299)
T PRK07132 4 WIKFLDNSATQNK--------ISHSFLLKSNYNEDIDEKILYFLNKFNNLQITN--LNEQEL--PANII-LF-DIFDKDL 69 (299)
T ss_pred HHHHHHHHHHhCC--------CCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCC--CCCCCC--CcceE-Ee-ccCCCcC
Confidence 4455566665322 224589999999999999999999986532100 000000 00000 01 0000 11
Q ss_pred ccccccchhHHHH--------cCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCchhhh
Q 003094 618 GYTEGGQLTEAVR--------RRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIE 689 (848)
Q Consensus 618 g~~~~~~l~~~~~--------~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~i~ 689 (848)
+. ..+.+..+ .+++.|++||++|+++...+|.|++.||+ ++.+++||++|+...
T Consensus 70 ~v---d~Ir~l~~~~~~~~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEE-----------Pp~~t~~il~~~~~~---- 131 (299)
T PRK07132 70 SK---SEFLSAINKLYFSSFVQSQKKILIIKNIEKTSNSLLNALLKTIEE-----------PPKDTYFLLTTKNIN---- 131 (299)
T ss_pred CH---HHHHHHHHHhccCCcccCCceEEEEecccccCHHHHHHHHHHhhC-----------CCCCeEEEEEeCChH----
Confidence 11 22222222 13678999999999999999999999998 457889999876222
Q ss_pred ccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHH
Q 003094 690 KGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIAD 750 (848)
Q Consensus 690 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~ 750 (848)
.+-|.+.+|| .++.|.|++.+++.+.+.
T Consensus 132 --------------------------------kll~TI~SRc-~~~~f~~l~~~~l~~~l~ 159 (299)
T PRK07132 132 --------------------------------KVLPTIVSRC-QVFNVKEPDQQKILAKLL 159 (299)
T ss_pred --------------------------------hChHHHHhCe-EEEECCCCCHHHHHHHHH
Confidence 2447899999 999999999999887664
No 412
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.78 E-value=4.6e-07 Score=96.74 Aligned_cols=171 Identities=13% Similarity=0.150 Sum_probs=97.4
Q ss_pred EEEeecCCcchHHHHHHHHHHHhcCCCCceEEecc--ccccccc---chhcccCCCCCCcccccc---cchhHH----HH
Q 003094 563 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDM--SEFMERH---TVSKLIGSPPGYVGYTEG---GQLTEA----VR 630 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~--~~~~~~~---~~~~l~g~~~g~~g~~~~---~~l~~~----~~ 630 (848)
.++++||+|+|||++++.+++.+... .+....+ ....... .+...+|.+.. +.... ..+... ..
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~~~--~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~--~~~~~~~~~~l~~~l~~~~~ 120 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLDQE--RVVAAKLVNTRVDAEDLLRMVAADFGLETE--GRDKAALLRELEDFLIEQFA 120 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCC--CeEEeeeeCCCCCHHHHHHHHHHHcCCCCC--CCCHHHHHHHHHHHHHHHHh
Confidence 48899999999999999999887321 2221111 1111111 11122343221 11111 122222 23
Q ss_pred cCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHH
Q 003094 631 RRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNR 710 (848)
Q Consensus 631 ~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~ 710 (848)
.....||+|||++.+++..++.|..+.+-.. + + ...+.||++.....
T Consensus 121 ~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~--~--~----~~~~~vvl~g~~~~------------------------- 167 (269)
T TIGR03015 121 AGKRALLVVDEAQNLTPELLEELRMLSNFQT--D--N----AKLLQIFLVGQPEF------------------------- 167 (269)
T ss_pred CCCCeEEEEECcccCCHHHHHHHHHHhCccc--C--C----CCeEEEEEcCCHHH-------------------------
Confidence 4566799999999999988887765543210 0 0 12234566653110
Q ss_pred HHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCeEeecHHHHHHHHHc
Q 003094 711 IKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEE 780 (848)
Q Consensus 711 ~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~~~l~~~~~~~~~~~~~l~i~~~a~~~l~~~ 780 (848)
.+.+...-...+.+|+...+.++|++.+|+.+++...+.... ......+++++++.|.+.
T Consensus 168 -----~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~~l~~~l~~~g-----~~~~~~~~~~~~~~i~~~ 227 (269)
T TIGR03015 168 -----RETLQSPQLQQLRQRIIASCHLGPLDREETREYIEHRLERAG-----NRDAPVFSEGAFDAIHRF 227 (269)
T ss_pred -----HHHHcCchhHHHHhheeeeeeCCCCCHHHHHHHHHHHHHHcC-----CCCCCCcCHHHHHHHHHH
Confidence 000110011356788877899999999999999887776421 112335899999999984
No 413
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.77 E-value=1e-07 Score=108.08 Aligned_cols=163 Identities=17% Similarity=0.301 Sum_probs=106.1
Q ss_pred EEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhcccCCCCCCcccccccchhHHHH-------cCCCe
Q 003094 563 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVR-------RRPYT 635 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~-------~~~~~ 635 (848)
.+||+||||-||||||+.+|+.. +...+.+|.++-...+.+. ..+..++. ...+.
T Consensus 328 ilLL~GppGlGKTTLAHViAkqa---GYsVvEINASDeRt~~~v~---------------~kI~~avq~~s~l~adsrP~ 389 (877)
T KOG1969|consen 328 ILLLCGPPGLGKTTLAHVIAKQA---GYSVVEINASDERTAPMVK---------------EKIENAVQNHSVLDADSRPV 389 (877)
T ss_pred eEEeecCCCCChhHHHHHHHHhc---CceEEEecccccccHHHHH---------------HHHHHHHhhccccccCCCcc
Confidence 47899999999999999999986 8899999988754333222 12222222 13456
Q ss_pred EEEEcCCCcCChHHHHHHHhhhcC--cEEEcCCCce---------eecCCeEEEEecCCCchhhhccCcccccccCCCcc
Q 003094 636 VVLFDEIEKAHPDVFNMMLQILED--GRLTDSKGRT---------VDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEK 704 (848)
Q Consensus 636 Vl~lDEid~l~~~~~~~Ll~~le~--g~~~~~~g~~---------v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~ 704 (848)
.|++||||-.++.+.+.|+.++.. ...+-..+.. -...+- ||+.+|.
T Consensus 390 CLViDEIDGa~~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RP-IICICNd--------------------- 447 (877)
T KOG1969|consen 390 CLVIDEIDGAPRAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRP-IICICND--------------------- 447 (877)
T ss_pred eEEEecccCCcHHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCC-EEEEecC---------------------
Confidence 899999999999999999999973 1111111100 001222 4455551
Q ss_pred cccHHHHHHHHHHHHHhhcChhhh--hccCeEEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCeEeecHHHHHHHHHccC
Q 003094 705 DSSYNRIKSLVTEELKQYFRPEFL--NRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGY 782 (848)
Q Consensus 705 ~~~~~~~~~~~~~~l~~~~~~~ll--~R~d~~i~f~~l~~~el~~I~~~~l~~~~~~~~~~~~~l~i~~~a~~~l~~~~~ 782 (848)
.+-|+|. .-+-.++.|.|++..-+.+-++.+... ..+.++..++..|++.
T Consensus 448 -----------------LYaPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~r---------E~mr~d~~aL~~L~el-- 499 (877)
T KOG1969|consen 448 -----------------LYAPALRPLRPFAEIIAFVPPSQSRLVERLNEICHR---------ENMRADSKALNALCEL-- 499 (877)
T ss_pred -----------------ccchhhhhcccceEEEEecCCChhHHHHHHHHHHhh---------hcCCCCHHHHHHHHHH--
Confidence 1234443 233478999999998877554444432 3355888999999993
Q ss_pred CCCCCchHHHHHHHH
Q 003094 783 NPSYGARPLRRAIMR 797 (848)
Q Consensus 783 ~~~~g~r~L~~~i~~ 797 (848)
-..++|.+|+.
T Consensus 500 ----~~~DIRsCINt 510 (877)
T KOG1969|consen 500 ----TQNDIRSCINT 510 (877)
T ss_pred ----hcchHHHHHHH
Confidence 34678888774
No 414
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.76 E-value=7.9e-09 Score=118.02 Aligned_cols=151 Identities=22% Similarity=0.255 Sum_probs=95.8
Q ss_pred CCCCCccCChHHHHHHHHHhccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCc------------------e
Q 003094 194 GKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGK------------------K 255 (848)
Q Consensus 194 ~~ld~iiG~~~~~~~l~~~l~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~------------------~ 255 (848)
..|++++|++..++.+...+ ....+++|+||||+|||++++.++..+........+... +
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa--~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g~~~~~~~~~~~P 266 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAA--AGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVGKLIDRKQIKQRP 266 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhc--cCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchhhhccccccccCC
Confidence 36788999999988775544 355789999999999999999999866432111111111 1
Q ss_pred EEEEeCCc----ccccccccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCC-------
Q 003094 256 VITLDMGL----LVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARG------- 324 (848)
Q Consensus 256 v~~~~~~~----l~~~~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~------- 324 (848)
+.....+. +..|.. ..--..+....+.+|||||++.+. ...++.|+..|+.+
T Consensus 267 f~~p~~s~s~~~~~ggg~---------~~~pG~i~lA~~GvLfLDEi~e~~--------~~~~~~L~~~LE~~~v~i~r~ 329 (499)
T TIGR00368 267 FRSPHHSASKPALVGGGP---------IPLPGEISLAHNGVLFLDELPEFK--------RSVLDALREPIEDGSISISRA 329 (499)
T ss_pred ccccccccchhhhhCCcc---------ccchhhhhccCCCeEecCChhhCC--------HHHHHHHHHHHHcCcEEEEec
Confidence 11111110 000000 000112334456799999999983 45888888888644
Q ss_pred --------ceEEEEeeChHHHHh------------------hhhcChhhhcccC-CCcCCCCCHHH
Q 003094 325 --------ELQCIGATTLDEYRK------------------HIEKDPALERRFQ-PVKVPEPSVDE 363 (848)
Q Consensus 325 --------~v~vI~atn~~~~~~------------------~~~~d~al~~Rf~-~i~~~~p~~~e 363 (848)
.+.+|+++|+..... ...++..|++||+ .+.++.++.++
T Consensus 330 g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~~ 395 (499)
T TIGR00368 330 SAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPEK 395 (499)
T ss_pred CcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHHH
Confidence 479999999743111 1257899999998 78888887664
No 415
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.76 E-value=1.3e-07 Score=102.03 Aligned_cols=95 Identities=25% Similarity=0.223 Sum_probs=61.6
Q ss_pred eEEEEcccchhhhCCCCCchHHHHHHHhhhhcCC-------------ceEEEEeeChHHHHhh--hhcChhhhcccCCCc
Q 003094 291 IILFIDEVHTLIGAGAAEGAIDAANILKPSLARG-------------ELQCIGATTLDEYRKH--IEKDPALERRFQPVK 355 (848)
Q Consensus 291 ~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~-------------~v~vI~atn~~~~~~~--~~~d~al~~Rf~~i~ 355 (848)
+|+-|+|+... ..+++..|+.+++.+ ..+||+++|+.+|..+ .+...+|++||..|.
T Consensus 238 Gi~~f~Ei~K~--------~~~~l~~LL~~~qE~~v~~~~~~~~~~~d~liia~sNe~e~~~~~~~k~~eaf~dR~~~i~ 309 (361)
T smart00763 238 GILEFVEMFKA--------DIKFLHPLLTATQEGNIKGTGGFAMIPIDGLIIAHSNESEWQRFKSNKKNEALLDRIIKVK 309 (361)
T ss_pred ceEEEeehhcC--------CHHHHHHHhhhhhcceEecCCcccccccceEEEEeCCHHHHhhhhccccchhhhhceEEEe
Confidence 46666666655 345666666666522 1578999999998755 356899999999888
Q ss_pred CCCC-CHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhh
Q 003094 356 VPEP-SVDETIQILKGLRERYEIHHKLRYTDEALVSAAQL 394 (848)
Q Consensus 356 ~~~p-~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~ 394 (848)
+|.| +.++-.+|.+..+..-. .....+.+..+..++.+
T Consensus 310 vpY~l~~~~E~~Iy~k~~~~s~-~~~~~~aP~~le~aa~~ 348 (361)
T smart00763 310 VPYCLRVSEEAQIYEKLLRNSD-LTEAHIAPHTLEMAALF 348 (361)
T ss_pred CCCcCCHHHHHHHHHHHhccCc-CcccccCchHHHHHHHH
Confidence 8886 45677778887665311 11344555555555543
No 416
>PRK12377 putative replication protein; Provisional
Probab=98.75 E-value=3.1e-08 Score=102.98 Aligned_cols=105 Identities=22% Similarity=0.381 Sum_probs=68.7
Q ss_pred eEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhcccCCCCCCcccccccchhHHHHcCCCeEEEEcC
Q 003094 562 ASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDE 641 (848)
Q Consensus 562 ~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDE 641 (848)
.+++|+||||||||+||.+|++.+...+..++.+...++...-... |........+...+.+. .+|+|||
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~--------~~~~~~~~~~l~~l~~~--dLLiIDD 171 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHES--------YDNGQSGEKFLQELCKV--DLLVLDE 171 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHH--------HhccchHHHHHHHhcCC--CEEEEcC
Confidence 3599999999999999999999987666777777766654421111 10000111233334433 4999999
Q ss_pred C--CcCChHHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCch
Q 003094 642 I--EKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSS 686 (848)
Q Consensus 642 i--d~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~ 686 (848)
+ +..++..++.|.++++...- .+.=.|+|||....
T Consensus 172 lg~~~~s~~~~~~l~~ii~~R~~----------~~~ptiitSNl~~~ 208 (248)
T PRK12377 172 IGIQRETKNEQVVLNQIIDRRTA----------SMRSVGMLTNLNHE 208 (248)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHh----------cCCCEEEEcCCCHH
Confidence 9 55677888999999986331 11235788996553
No 417
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.74 E-value=2.3e-07 Score=92.29 Aligned_cols=179 Identities=24% Similarity=0.302 Sum_probs=120.9
Q ss_pred cccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhcccC
Q 003094 532 RVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIG 611 (848)
Q Consensus 532 ~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g 611 (848)
.++|-+...+.+.+..++...|. |-.++||+|..||||+++++++...+...+..+|.++=.++..
T Consensus 61 ~l~Gvd~qk~~L~~NT~~F~~G~-----pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~~--------- 126 (287)
T COG2607 61 DLVGVDRQKEALVRNTEQFAEGL-----PANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLAT--------- 126 (287)
T ss_pred HHhCchHHHHHHHHHHHHHHcCC-----cccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHhh---------
Confidence 46788888888888887776553 3457999999999999999999999888788888776555422
Q ss_pred CCCCCcccccccchhHHHHcCCC-eEEEEcCCCcC-ChHHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCchhhh
Q 003094 612 SPPGYVGYTEGGQLTEAVRRRPY-TVVLFDEIEKA-HPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIE 689 (848)
Q Consensus 612 ~~~g~~g~~~~~~l~~~~~~~~~-~Vl~lDEid~l-~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~i~ 689 (848)
-..+.+.++..+. -|||+|+.--= +......|-.+||.|- .-.+.|++|.+|||...-+-+
T Consensus 127 ----------Lp~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~v-------e~rP~NVl~YATSNRRHLl~e 189 (287)
T COG2607 127 ----------LPDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALEGGV-------EGRPANVLFYATSNRRHLLPE 189 (287)
T ss_pred ----------HHHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhcCCc-------ccCCCeEEEEEecCCcccccH
Confidence 1345666776654 58888986543 3456677777787644 224579999999995432211
Q ss_pred ccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHHHHHHH
Q 003094 690 KGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKE 755 (848)
Q Consensus 690 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~~~l~~ 755 (848)
.-....++. .. ....+.+++. -.|-+||.--+.|.|.+.++...|++...+.
T Consensus 190 ~~~dn~~~~------~e--ih~~eaveEK------lSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~ 241 (287)
T COG2607 190 DMKDNEGST------GE--IHPSEAVEEK------LSLSDRFGLWLSFYPCDQDEYLKIVDHYAKH 241 (287)
T ss_pred hhhhCCCcc------cc--cChhHHHHHh------hchhhhcceeecccCCCHHHHHHHHHHHHHH
Confidence 100011100 00 0011222222 2466899888999999999999999988865
No 418
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.73 E-value=5.2e-07 Score=102.32 Aligned_cols=211 Identities=14% Similarity=0.182 Sum_probs=135.0
Q ss_pred CCccCChHHHHHHHHHhcc-----CCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCccccc----
Q 003094 197 DPVVGRQPQIERVVQILGR-----RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAG---- 267 (848)
Q Consensus 197 d~iiG~~~~~~~l~~~l~~-----~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~---- 267 (848)
+.+-+|+.+..+|...+.. .....+.+.|-||||||.+++.+.+.|....-...+....++++|.-.+...
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y 475 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIY 475 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHH
Confidence 4577899999888776543 2233577889999999999999999887432222233455666665433321
Q ss_pred ---------ccccch-HHHHHHHHHHHH-HhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhh-----hcCCceEEEEe
Q 003094 268 ---------TKYRGE-FEERLKKLMEEI-KQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPS-----LARGELQCIGA 331 (848)
Q Consensus 268 ---------~~~~g~-~~~~l~~l~~~~-~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~-----l~~~~v~vI~a 331 (848)
.+..+. .-..+..-|..- ....++||+|||+|.|+.. -+++|..+ +.+.+++||+.
T Consensus 476 ~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr--------~QdVlYn~fdWpt~~~sKLvvi~I 547 (767)
T KOG1514|consen 476 EKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTR--------SQDVLYNIFDWPTLKNSKLVVIAI 547 (767)
T ss_pred HHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcc--------cHHHHHHHhcCCcCCCCceEEEEe
Confidence 000000 001111112200 1245789999999999854 23444433 34778999998
Q ss_pred eChHHHHhhhhcChhhhcccC--CCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCChhhHH
Q 003094 332 TTLDEYRKHIEKDPALERRFQ--PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAI 409 (848)
Q Consensus 332 tn~~~~~~~~~~d~al~~Rf~--~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~p~~a~ 409 (848)
+|..+....+ +.+.+.+|+. .|.|.+++.+|+.+|+...+... ..+.+.+++.+++.-....++ .++|.
T Consensus 548 aNTmdlPEr~-l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~-----~~f~~~aielvarkVAavSGD---aRral 618 (767)
T KOG1514|consen 548 ANTMDLPERL-LMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGL-----DAFENKAIELVARKVAAVSGD---ARRAL 618 (767)
T ss_pred cccccCHHHH-hccchhhhccceeeecCCCCHHHHHHHHHHhhcch-----hhcchhHHHHHHHHHHhcccc---HHHHH
Confidence 8876643333 4556666774 89999999999999999877643 345667777776655555555 56788
Q ss_pred HHHHHHhhHHHHhhc
Q 003094 410 DLIDEAGSRVRLRHA 424 (848)
Q Consensus 410 ~ll~~a~~~~~~~~~ 424 (848)
++++.|...+.-++.
T Consensus 619 dic~RA~Eia~~~~~ 633 (767)
T KOG1514|consen 619 DICRRAAEIAEERNV 633 (767)
T ss_pred HHHHHHHHHhhhhcc
Confidence 888888777665544
No 419
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=98.73 E-value=6.9e-07 Score=106.85 Aligned_cols=140 Identities=18% Similarity=0.197 Sum_probs=89.9
Q ss_pred CCCCCcEEECCCCCcHHHHH-HHHHHHhhCCCCCCCCCCceEEEEeCCcccccccccchHHHHHHHHHHHH---Hh----
Q 003094 216 RTKNNPCLIGEPGVGKTAIA-EGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEI---KQ---- 287 (848)
Q Consensus 216 ~~~~~iLL~GppGtGKT~la-~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~~~~g~~~~~l~~l~~~~---~~---- 287 (848)
.+.++++++||||+|||++. ..|-.+. ..+|+.++.+.-.. ++..+..+-... ..
T Consensus 1492 nt~R~~i~cGppGSgK~mlM~~sLrs~~----------~~ev~~~Nfs~~t~-------T~s~ls~Ler~t~yy~~tg~~ 1554 (3164)
T COG5245 1492 NTLRSYIYCGPPGSGKEMLMCPSLRSEL----------ITEVKYFNFSTCTM-------TPSKLSVLERETEYYPNTGVV 1554 (3164)
T ss_pred hccceEEEECCCCCccchhcchhhhhhh----------heeeeEEeeccccC-------CHHHHHHHHhhceeeccCCeE
Confidence 46789999999999999864 3444443 35677777543221 111222221111 11
Q ss_pred -------CCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCC--------------ceEEEEeeChHHHHhhhhcChh
Q 003094 288 -------SDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARG--------------ELQCIGATTLDEYRKHIEKDPA 346 (848)
Q Consensus 288 -------~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~--------------~v~vI~atn~~~~~~~~~~d~a 346 (848)
-...|||.|||+ .+.+......++.-.|++++++. ++++.|++|++...........
T Consensus 1555 ~l~PK~~vK~lVLFcDeIn--Lp~~~~y~~~~vI~FlR~l~e~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~~~eR 1632 (3164)
T COG5245 1555 RLYPKPVVKDLVLFCDEIN--LPYGFEYYPPTVIVFLRPLVERQGFWSSIAVSWVTICGIILYGACNPGTDEGRVKYYER 1632 (3164)
T ss_pred EEccCcchhheEEEeeccC--CccccccCCCceEEeeHHHHHhcccccchhhhHhhhcceEEEccCCCCCCcccCccHHH
Confidence 123599999999 35555555555566666666642 4789999999875554555555
Q ss_pred hhcccCCCcCCCCCHHHHHHHHHHHHHH
Q 003094 347 LERRFQPVKVPEPSVDETIQILKGLRER 374 (848)
Q Consensus 347 l~~Rf~~i~~~~p~~~e~~~Il~~~~~~ 374 (848)
+.|+-..|.+..|....+.+|...++..
T Consensus 1633 f~r~~v~vf~~ype~~SL~~Iyea~l~~ 1660 (3164)
T COG5245 1633 FIRKPVFVFCCYPELASLRNIYEAVLMG 1660 (3164)
T ss_pred HhcCceEEEecCcchhhHHHHHHHHHHH
Confidence 6555557788899999999998876654
No 420
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.71 E-value=1.1e-07 Score=100.80 Aligned_cols=199 Identities=15% Similarity=0.290 Sum_probs=116.0
Q ss_pred EEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhcccCCCCCCcccccccchhHHHHcCCCeEEEEcCC
Q 003094 563 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEI 642 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEi 642 (848)
++||+||+|||||.+++.+-+.+.........++++.......+..++... .-... +..... ..+...|+|||++
T Consensus 35 pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tts~~~q~~ie~~---l~k~~-~~~~gP-~~~k~lv~fiDDl 109 (272)
T PF12775_consen 35 PVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTTSNQLQKIIESK---LEKRR-GRVYGP-PGGKKLVLFIDDL 109 (272)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHHHHHHHHCCCTT---ECECT-TEEEEE-ESSSEEEEEEETT
T ss_pred cEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCCHHHHHHHHhhc---EEcCC-CCCCCC-CCCcEEEEEeccc
Confidence 599999999999999987665542222224467777665554444444321 10000 111110 1234569999999
Q ss_pred CcCCh------HHHHHHHhhhcCcEEEcCCC-ceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHH
Q 003094 643 EKAHP------DVFNMMLQILEDGRLTDSKG-RTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLV 715 (848)
Q Consensus 643 d~l~~------~~~~~Ll~~le~g~~~~~~g-~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~ 715 (848)
+...+ ...+.|.++|+.|-+.|... .-....++.+|+++|.+..
T Consensus 110 N~p~~d~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~G----------------------------- 160 (272)
T PF12775_consen 110 NMPQPDKYGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGG----------------------------- 160 (272)
T ss_dssp T-S---TTS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT-----------------------------
T ss_pred CCCCCCCCCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCC-----------------------------
Confidence 97754 36799999999988887653 3345678999999874321
Q ss_pred HHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHHHHHHHHHHHHh--cC--CCeEeecH---HHHHHHHHc------cC
Q 003094 716 TEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLK--TK--DIELQVTE---RFRERVVEE------GY 782 (848)
Q Consensus 716 ~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~~~l~~~~~~~~--~~--~~~l~i~~---~a~~~l~~~------~~ 782 (848)
...+++-|++.| .++.+++++.+.+..|...++....+... .. +..-.+-. ++.+.+... ..
T Consensus 161 ----r~~is~R~~r~f-~i~~~~~p~~~sl~~If~~il~~~l~~~~f~~~v~~~~~~lv~ati~ly~~i~~~~~ptp~k~ 235 (272)
T PF12775_consen 161 ----RNPISPRFLRHF-NILNIPYPSDESLNTIFSSILQSHLKNGGFPEDVQKLADKLVQATIELYQKIRQQFLPTPSKP 235 (272)
T ss_dssp ------SHHHHHHTTE-EEEE----TCCHHHHHHHHHHHHHTCHTTSSGGGCCCHHHHHHHHHHHHHHHHHHS-TTTTCT
T ss_pred ----CCCCChHHhhhe-EEEEecCCChHHHHHHHHHHHhhhcccCCCChHHHHHHHHHHHHHHHHHHhhhcccCCCCccc
Confidence 012567888888 89999999999999999998876543211 00 10001111 222233322 01
Q ss_pred CCCCCchHHHHHHHHHHH
Q 003094 783 NPSYGARPLRRAIMRLLE 800 (848)
Q Consensus 783 ~~~~g~r~L~~~i~~~l~ 800 (848)
.-.++.|+|.++++.++.
T Consensus 236 HY~FnlRDlsrv~qGil~ 253 (272)
T PF12775_consen 236 HYTFNLRDLSRVFQGILL 253 (272)
T ss_dssp TTTSHHHHHHHHHHHHHH
T ss_pred eeeccHHHHHHHHHHHHh
Confidence 224678999998887764
No 421
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.71 E-value=7.7e-08 Score=111.79 Aligned_cols=177 Identities=14% Similarity=0.140 Sum_probs=114.5
Q ss_pred ceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhcccCCCCCCccccccc--chhHHHHcCCCeEEE
Q 003094 561 IASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGG--QLTEAVRRRPYTVVL 638 (848)
Q Consensus 561 ~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~~g~~~~~--~l~~~~~~~~~~Vl~ 638 (848)
++.+++.|+.||+|+++++.++..+-. ..||+.+..+ .+...|+|.-.-......+. .-.+.+..++++|||
T Consensus 25 ~gGv~i~g~~G~~ks~~~r~l~~llp~-~~p~r~~p~~-----~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~GvL~ 98 (584)
T PRK13406 25 LGGVVLRARAGPVRDRWLAALRALLPA-GTPLRRLPPG-----IADDRLLGGLDLAATLRAGRPVAQRGLLAEADGGVLV 98 (584)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhcCC-CCCcccCCCC-----CcHHHccCCchHHhHhhcCCcCCCCCceeeccCCEEE
Confidence 356999999999999999999998722 3466654433 23345666421000000001 123456678899999
Q ss_pred EcCCCcCChHHHHHHHhhhcCcEEEcC-CCceeec-CCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHH
Q 003094 639 FDEIEKAHPDVFNMMLQILEDGRLTDS-KGRTVDF-KNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVT 716 (848)
Q Consensus 639 lDEid~l~~~~~~~Ll~~le~g~~~~~-~g~~v~~-~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 716 (848)
+||++.+++.+++.|++.|++|.++.. +|..+.+ .++++|+|-| +..
T Consensus 99 lDe~n~~~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~-~~~------------------------------ 147 (584)
T PRK13406 99 LAMAERLEPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDE-GAE------------------------------ 147 (584)
T ss_pred ecCcccCCHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCC-Chh------------------------------
Confidence 999999999999999999999988752 2444444 4777777633 110
Q ss_pred HHHHhhcChhhhhccCeEEEcCCCCHHHHHHHH--HHHHHHHHHHHhcCCCeEeecHHHHHHHHHc
Q 003094 717 EELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIA--DIMLKEVFDRLKTKDIELQVTERFRERVVEE 780 (848)
Q Consensus 717 ~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~--~~~l~~~~~~~~~~~~~l~i~~~a~~~l~~~ 780 (848)
-...+++.+++||+-.|.+.+++..+..+.. ...+....+++ ..+.++++++++++..
T Consensus 148 --~~~~L~~~lLDRf~l~v~v~~~~~~~~~~~~~~~~~I~~AR~rl----~~v~v~~~~l~~i~~~ 207 (584)
T PRK13406 148 --EDERAPAALADRLAFHLDLDGLALRDAREIPIDADDIAAARARL----PAVGPPPEAIAALCAA 207 (584)
T ss_pred --cccCCCHHhHhheEEEEEcCCCChHHhcccCCCHHHHHHHHHHH----ccCCCCHHHHHHHHHH
Confidence 0124789999999999999998876653211 11122222233 2456788888887764
No 422
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.70 E-value=7.7e-08 Score=91.02 Aligned_cols=129 Identities=23% Similarity=0.277 Sum_probs=77.1
Q ss_pred CCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCccccc------------ccccchHHHHHHHHHHHH
Q 003094 218 KNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAG------------TKYRGEFEERLKKLMEEI 285 (848)
Q Consensus 218 ~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~------------~~~~g~~~~~l~~l~~~~ 285 (848)
..+++|+||||||||++++.++..+.... ..++.++++..... .............++..+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG-------GGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALA 74 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCC-------CCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999999885421 24677776543321 111223445566777777
Q ss_pred HhCCCeEEEEcccchhhhCCCCCchHH--HHHHHhhhhcCCceEEEEeeChHHHHhhhhcChhhhcccC-CCcCC
Q 003094 286 KQSDEIILFIDEVHTLIGAGAAEGAID--AANILKPSLARGELQCIGATTLDEYRKHIEKDPALERRFQ-PVKVP 357 (848)
Q Consensus 286 ~~~~~~IL~IDEid~l~~~~~~~~~~~--~~~~L~~~l~~~~v~vI~atn~~~~~~~~~~d~al~~Rf~-~i~~~ 357 (848)
....+.++||||++.+........... ...............+|+++|... ...+..+..|++ .+.++
T Consensus 75 ~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~~~~~~~~~~~~~ 145 (148)
T smart00382 75 RKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEK----DLGPALLRRRFDRRIVLL 145 (148)
T ss_pred HhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCCCc----cCchhhhhhccceEEEec
Confidence 776678999999999864310000000 000123333456788888988511 133445555665 44443
No 423
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.70 E-value=2.4e-07 Score=100.72 Aligned_cols=152 Identities=18% Similarity=0.224 Sum_probs=100.4
Q ss_pred HHHHHHHHHhccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCC---------------CCCCCceEEEEeCCcc--cc
Q 003094 204 PQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVP---------------DTIEGKKVITLDMGLL--VA 266 (848)
Q Consensus 204 ~~~~~l~~~l~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~---------------~~l~~~~v~~~~~~~l--~~ 266 (848)
...+++... ..+-+..+||+||+|+|||++|+.+|+.+.+.... ....+..+++++...- ..
T Consensus 8 ~~w~~l~~~-~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~ 86 (325)
T PRK08699 8 EQWRQIAEH-WERRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPEN 86 (325)
T ss_pred HHHHHHHHh-cCCcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccc
Confidence 344455544 23444457899999999999999999999763210 0122345666654221 00
Q ss_pred cccccchHHHHHHHHHHHHHh----CCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCC--ceEEEEeeChHHHHhh
Q 003094 267 GTKYRGEFEERLKKLMEEIKQ----SDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARG--ELQCIGATTLDEYRKH 340 (848)
Q Consensus 267 ~~~~~g~~~~~l~~l~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~--~v~vI~atn~~~~~~~ 340 (848)
|.+...-..+.++.+.+.+.. ++..|++||+++.|. ....+.|+..++.. ...+|.+|+..+
T Consensus 87 g~~~~~I~id~iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld--------~~a~naLLk~LEep~~~~~~Ilvth~~~---- 154 (325)
T PRK08699 87 GRKLLQIKIDAVREIIDNVYLTSVRGGLRVILIHPAESMN--------LQAANSLLKVLEEPPPQVVFLLVSHAAD---- 154 (325)
T ss_pred cccCCCcCHHHHHHHHHHHhhCcccCCceEEEEechhhCC--------HHHHHHHHHHHHhCcCCCEEEEEeCChH----
Confidence 100000123456666666643 445688999999994 45788888888743 466777777766
Q ss_pred hhcChhhhcccCCCcCCCCCHHHHHHHHH
Q 003094 341 IEKDPALERRFQPVKVPEPSVDETIQILK 369 (848)
Q Consensus 341 ~~~d~al~~Rf~~i~~~~p~~~e~~~Il~ 369 (848)
.+.+.+.+||+.+.|++|+.++..+.|.
T Consensus 155 -~ll~ti~SRc~~~~~~~~~~~~~~~~L~ 182 (325)
T PRK08699 155 -KVLPTIKSRCRKMVLPAPSHEEALAYLR 182 (325)
T ss_pred -hChHHHHHHhhhhcCCCCCHHHHHHHHH
Confidence 5789999999999999999998877665
No 424
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.70 E-value=1.7e-07 Score=108.85 Aligned_cols=256 Identities=20% Similarity=0.222 Sum_probs=151.3
Q ss_pred HHHHHHhhccccChHHHHHHHHHHHHHHHccCCC--CC----CCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEec
Q 003094 523 LKMEETLHKRVIGQDEAVKAISRAIRRARVGLKN--PN----RPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLD 596 (848)
Q Consensus 523 ~~l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~--~~----~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~ 596 (848)
..+-+.+.-.+.|.+.+++.|.-++-. |... |. +.--|+||.|.||||||.|-+.+++.+. ..-+.+..
T Consensus 278 ~~l~~SiaPsIyG~e~VKkAilLqLfg---Gv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aP--r~vytsgk 352 (682)
T COG1241 278 DILIKSIAPSIYGHEDVKKAILLQLFG---GVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAP--RGVYTSGK 352 (682)
T ss_pred HHHHHHhcccccCcHHHHHHHHHHhcC---CCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCC--ceEEEccc
Confidence 344455667899999877766544421 2211 11 1225899999999999999999998762 22222222
Q ss_pred ccccccccchhcccCCCCCCcccccccchhHHHHcCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecCCeE
Q 003094 597 MSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTL 676 (848)
Q Consensus 597 ~~~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~i 676 (848)
.+.-.+-... .... + ..|. --.-.+++--+.+||..|||+|+++..-.+.|..+||.+.++-+++ =
T Consensus 353 gss~~GLTAa--v~rd-~-~tge--~~LeaGALVlAD~Gv~cIDEfdKm~~~dr~aihEaMEQQtIsIaKA--------G 418 (682)
T COG1241 353 GSSAAGLTAA--VVRD-K-VTGE--WVLEAGALVLADGGVCCIDEFDKMNEEDRVAIHEAMEQQTISIAKA--------G 418 (682)
T ss_pred cccccCceeE--EEEc-c-CCCe--EEEeCCEEEEecCCEEEEEeccCCChHHHHHHHHHHHhcEeeeccc--------c
Confidence 2221110000 0000 0 0110 0001233445778999999999999999999999999988875543 2
Q ss_pred EEEecCCCchhhhccCcccc-cccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEE-cCCCCHHHHHHHHHHHHH
Q 003094 677 LIMTSNVGSSVIEKGGRRIG-FDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIV-FRQLTKLEVKEIADIMLK 754 (848)
Q Consensus 677 iI~tsN~~~~~i~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~-f~~l~~~el~~I~~~~l~ 754 (848)
|+.|-|....++.......| |+......+ .-.|+++|++|||-++. ...++++.=..|+.+++.
T Consensus 419 I~atLnARcsvLAAaNP~~Gryd~~~~~~e--------------nI~l~~~lLSRFDLifvl~D~~d~~~D~~ia~hil~ 484 (682)
T COG1241 419 ITATLNARCSVLAAANPKFGRYDPKKTVAE--------------NINLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILD 484 (682)
T ss_pred eeeecchhhhhhhhhCCCCCcCCCCCCHHH--------------hcCCChhHHhhCCeeEEecCCCCccchHHHHHHHHH
Confidence 44444444444444444444 432222111 11378999999998744 455676656677777776
Q ss_pred HHH------------------------HHH---hcCCCeEeecHHHHHHHHHccCC--------------CCCCchHHHH
Q 003094 755 EVF------------------------DRL---KTKDIELQVTERFRERVVEEGYN--------------PSYGARPLRR 793 (848)
Q Consensus 755 ~~~------------------------~~~---~~~~~~l~i~~~a~~~l~~~~~~--------------~~~g~r~L~~ 793 (848)
... .++ ....+...+++++.+.|.+. |. -+.-+|+|..
T Consensus 485 ~h~~~~~~~~~~~~~~~~~~~~~~~~lrkYI~YAR~~v~P~lt~ea~e~l~~~-Yv~~Rk~~~~~~~~~~~piT~RqLEs 563 (682)
T COG1241 485 KHRGEEPEETISLDGVDEVEERDFELLRKYISYARKNVTPVLTEEAREELEDY-YVEMRKKSALVEEKRTIPITARQLES 563 (682)
T ss_pred HHhccccccccccccccccccCcHHHHHHHHHHHhccCCcccCHHHHHHHHHH-HHHhhhccccccccCcccccHHHHHH
Confidence 542 222 22234467899999998874 11 1233788888
Q ss_pred HHHHHHHHHHHHHHHccccCC
Q 003094 794 AIMRLLEDSMAEKMLAREIKE 814 (848)
Q Consensus 794 ~i~~~l~~~l~~~~l~~~~~~ 814 (848)
.|+ +..+.|++-|++...+
T Consensus 564 iiR--LaeA~Ak~rLS~~V~~ 582 (682)
T COG1241 564 IIR--LAEAHAKMRLSDVVEE 582 (682)
T ss_pred HHH--HHHHHHhhhccCCCCH
Confidence 887 6667777766654443
No 425
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.70 E-value=1.3e-08 Score=107.92 Aligned_cols=140 Identities=21% Similarity=0.359 Sum_probs=89.3
Q ss_pred CCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccccccccchHHHHHHHHHHHH-----------
Q 003094 217 TKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEI----------- 285 (848)
Q Consensus 217 ~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~~~~g~~~~~l~~l~~~~----------- 285 (848)
...++||+||+|||||++++.+.+.+... ..-+..++++.... ...+..+++..
T Consensus 32 ~~~pvLl~G~~GtGKT~li~~~l~~l~~~-------~~~~~~~~~s~~Tt--------s~~~q~~ie~~l~k~~~~~~gP 96 (272)
T PF12775_consen 32 NGRPVLLVGPSGTGKTSLIQNFLSSLDSD-------KYLVITINFSAQTT--------SNQLQKIIESKLEKRRGRVYGP 96 (272)
T ss_dssp CTEEEEEESSTTSSHHHHHHHHHHCSTTC-------CEEEEEEES-TTHH--------HHHHHHCCCTTECECTTEEEEE
T ss_pred cCCcEEEECCCCCchhHHHHhhhccCCcc-------ccceeEeeccCCCC--------HHHHHHHHhhcEEcCCCCCCCC
Confidence 46789999999999999999877655321 12234455543321 12222222111
Q ss_pred HhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCCc--------------eEEEEeeChHHHHhhhhcChhhhccc
Q 003094 286 KQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGE--------------LQCIGATTLDEYRKHIEKDPALERRF 351 (848)
Q Consensus 286 ~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~~--------------v~vI~atn~~~~~~~~~~d~al~~Rf 351 (848)
..+...|+||||++.- ..+..+.....++|+++++.++ +.+|+++++.. +...+++++.|.|
T Consensus 97 ~~~k~lv~fiDDlN~p--~~d~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~--Gr~~is~R~~r~f 172 (272)
T PF12775_consen 97 PGGKKLVLFIDDLNMP--QPDKYGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTG--GRNPISPRFLRHF 172 (272)
T ss_dssp ESSSEEEEEEETTT-S-----TTS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTT--T--SHHHHHHTTE
T ss_pred CCCcEEEEEecccCCC--CCCCCCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCC--CCCCCChHHhhhe
Confidence 0134579999999975 3445566667889999887432 78899998754 3346789999999
Q ss_pred CCCcCCCCCHHHHHHHHHHHHHHH
Q 003094 352 QPVKVPEPSVDETIQILKGLRERY 375 (848)
Q Consensus 352 ~~i~~~~p~~~e~~~Il~~~~~~~ 375 (848)
..+.++.|+.+....|+..++..+
T Consensus 173 ~i~~~~~p~~~sl~~If~~il~~~ 196 (272)
T PF12775_consen 173 NILNIPYPSDESLNTIFSSILQSH 196 (272)
T ss_dssp EEEE----TCCHHHHHHHHHHHHH
T ss_pred EEEEecCCChHHHHHHHHHHHhhh
Confidence 999999999999999999888754
No 426
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.69 E-value=1.2e-07 Score=110.94 Aligned_cols=125 Identities=18% Similarity=0.261 Sum_probs=82.3
Q ss_pred CCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCC-----------------------ceEEEEeeChHHHHhhhhcC
Q 003094 288 SDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARG-----------------------ELQCIGATTLDEYRKHIEKD 344 (848)
Q Consensus 288 ~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~-----------------------~v~vI~atn~~~~~~~~~~d 344 (848)
.++.+|||||++.|. ...+..|+..++.+ .+.+|+++++.... .++
T Consensus 225 AnGGtL~LDei~~L~--------~~~q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~~ll~---~~d 293 (637)
T PRK13765 225 AHKGVLFIDEINTLD--------LESQQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNLDALE---NMH 293 (637)
T ss_pred CCCcEEEEeChHhCC--------HHHHHHHHHHHHhCCEEecccccccccccCCCcceeeeeEEEEecCcCHHH---hhh
Confidence 345789999999983 34667777766422 35789999886432 569
Q ss_pred hhhhcccCC----CcCCC---CCHHHHHHHHHHHHHHHhhh-hcCCCChHHHHHHHhhhhcccccCC---C-hhhHHHHH
Q 003094 345 PALERRFQP----VKVPE---PSVDETIQILKGLRERYEIH-HKLRYTDEALVSAAQLSYQYISDRF---L-PDKAIDLI 412 (848)
Q Consensus 345 ~al~~Rf~~----i~~~~---p~~~e~~~Il~~~~~~~~~~-~~~~~s~~~l~~l~~~s~~~~~~~~---~-p~~a~~ll 412 (848)
|.|..||.. +.|+. -+.+.+..+++.+.+....+ ....++.+++..+++.+.+..+.+. + ..+..+++
T Consensus 294 pdL~~rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R~ag~r~~lsl~~~~l~~l~ 373 (637)
T PRK13765 294 PALRSRIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKRRAGRKGHLTLKLRDLGGLV 373 (637)
T ss_pred HHHHHHhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHhCCccccccCHHHHHHHH
Confidence 999999952 44432 23445555555444443332 2336899999999998888777764 2 55677888
Q ss_pred HHHhhHHHHhh
Q 003094 413 DEAGSRVRLRH 423 (848)
Q Consensus 413 ~~a~~~~~~~~ 423 (848)
+.|...++...
T Consensus 374 r~a~~~a~~~~ 384 (637)
T PRK13765 374 RVAGDIARSEG 384 (637)
T ss_pred HHHHHHHHhhc
Confidence 88877666543
No 427
>PF02861 Clp_N: Clp amino terminal domain; InterPro: IPR004176 This short domain is found in one or two copies at the amino terminus of ClpA and ClpB proteins from bacteria and eukaryotes. The function of these domains is uncertain but they may form a protein binding site []. The proteins are thought to be subunits of ATP-dependent proteases which act as chaperones to target the proteases to substrates.; GO: 0019538 protein metabolic process; PDB: 3FH2_A 3ZRJ_A 3ZRI_A 1QVR_C 3FES_C 2Y1R_F 3PXG_D 2Y1Q_A 3PXI_C 2K77_A ....
Probab=98.69 E-value=3.3e-08 Score=77.12 Aligned_cols=52 Identities=46% Similarity=0.811 Sum_probs=48.6
Q ss_pred HHHHHHHhCCCCcCHHHHHHHHhhCCCchHHHHHHHcCCChHHHHHHHHHHh
Q 003094 106 AQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRTQVIRMV 157 (848)
Q Consensus 106 A~~~A~~~~~~~i~~eHlLlall~~~~~~a~~iL~~~gv~~~~l~~~~~~~~ 157 (848)
|+++|+++++.+|++||||+||+.++++.+..+|+++|+|++.++..+++.+
T Consensus 1 A~~~A~~~~~~~i~~eHlL~all~~~~~~~~~il~~~~id~~~l~~~i~~~l 52 (53)
T PF02861_consen 1 AQELARERGHQYISPEHLLLALLEDPDSIAARILKKLGIDPEQLKAAIEKAL 52 (53)
T ss_dssp HHHHHHHTTBSSE-HHHHHHHHHHHTTSHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHcCCCcccHHHHHHHHHhhhhHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 7899999999999999999999999999999999999999999999998765
No 428
>PRK08116 hypothetical protein; Validated
Probab=98.68 E-value=2.1e-07 Score=98.59 Aligned_cols=106 Identities=17% Similarity=0.313 Sum_probs=69.8
Q ss_pred EEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhcccCCCCCCcccccccchhHHHHcCCCeEEEEcCC
Q 003094 563 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEI 642 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEi 642 (848)
+++|+|++|||||+||.++++.+...+.+++.++.+++..... .-++.. +......+.+.+... .+|+|||+
T Consensus 116 gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~--~~~~~~----~~~~~~~~~~~l~~~--dlLviDDl 187 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIK--STYKSS----GKEDENEIIRSLVNA--DLLILDDL 187 (268)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHH--HHHhcc----ccccHHHHHHHhcCC--CEEEEecc
Confidence 4899999999999999999999865577788888776543211 001110 000112233444434 49999999
Q ss_pred --CcCChHHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCch
Q 003094 643 --EKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSS 686 (848)
Q Consensus 643 --d~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~ 686 (848)
+..++..++.|..+++... . .+..+|+|||....
T Consensus 188 g~e~~t~~~~~~l~~iin~r~-~---------~~~~~IiTsN~~~~ 223 (268)
T PRK08116 188 GAERDTEWAREKVYNIIDSRY-R---------KGLPTIVTTNLSLE 223 (268)
T ss_pred cCCCCCHHHHHHHHHHHHHHH-H---------CCCCEEEECCCCHH
Confidence 5677888899999987632 1 12358889986554
No 429
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.67 E-value=1.8e-07 Score=102.70 Aligned_cols=175 Identities=17% Similarity=0.271 Sum_probs=111.7
Q ss_pred CCCceEEEeecCCcchHHHHHHHHHHHhcCCCC--ceEEecccccccccchhcccCCCCCCcccccccchhHHHHcCCCe
Q 003094 558 NRPIASFIFSGPTGVGKSELAKALAAYYFGSEE--AMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYT 635 (848)
Q Consensus 558 ~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~--~~i~i~~~~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~ 635 (848)
..+..+++||||+|.|||.|++++++.....+. .++.+....+..+. +..+.. .....+.+.. .-.
T Consensus 110 g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~-v~a~~~--------~~~~~Fk~~y---~~d 177 (408)
T COG0593 110 GGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDF-VKALRD--------NEMEKFKEKY---SLD 177 (408)
T ss_pred CCcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHH-HHHHHh--------hhHHHHHHhh---ccC
Confidence 334556999999999999999999998754333 44444444443221 110000 0001111111 234
Q ss_pred EEEEcCCCcCCh------HHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHH
Q 003094 636 VVLFDEIEKAHP------DVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYN 709 (848)
Q Consensus 636 Vl~lDEid~l~~------~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~ 709 (848)
+++||+|+.+.. .+++.+..+.++|. .+|+|+......+
T Consensus 178 lllIDDiq~l~gk~~~qeefFh~FN~l~~~~k--------------qIvltsdr~P~~l--------------------- 222 (408)
T COG0593 178 LLLIDDIQFLAGKERTQEEFFHTFNALLENGK--------------QIVLTSDRPPKEL--------------------- 222 (408)
T ss_pred eeeechHhHhcCChhHHHHHHHHHHHHHhcCC--------------EEEEEcCCCchhh---------------------
Confidence 899999998753 35555666665543 5788886444322
Q ss_pred HHHHHHHHHHHhhcChhhhhccCe--EEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCeEeecHHHHHHHHHccCCCCCC
Q 003094 710 RIKSLVTEELKQYFRPEFLNRLDE--MIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYG 787 (848)
Q Consensus 710 ~~~~~~~~~l~~~~~~~ll~R~d~--~i~f~~l~~~el~~I~~~~l~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g 787 (848)
..+.|.|.+||.- ++...|++.+....|+....+. ..+.++++++.+|+.. +. -+
T Consensus 223 -----------~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~---------~~~~i~~ev~~~la~~-~~--~n 279 (408)
T COG0593 223 -----------NGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAED---------RGIEIPDEVLEFLAKR-LD--RN 279 (408)
T ss_pred -----------ccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHh---------cCCCCCHHHHHHHHHH-hh--cc
Confidence 1245889999954 6899999999999999774433 4466999999999985 22 35
Q ss_pred chHHHHHHHHHHHHH
Q 003094 788 ARPLRRAIMRLLEDS 802 (848)
Q Consensus 788 ~r~L~~~i~~~l~~~ 802 (848)
.|+|.-++.++...+
T Consensus 280 vReLegaL~~l~~~a 294 (408)
T COG0593 280 VRELEGALNRLDAFA 294 (408)
T ss_pred HHHHHHHHHHHHHHH
Confidence 688877777665543
No 430
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.65 E-value=2.3e-07 Score=100.63 Aligned_cols=216 Identities=18% Similarity=0.191 Sum_probs=132.2
Q ss_pred hccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCC--CCceEEecccccccccchh
Q 003094 530 HKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGS--EEAMIRLDMSEFMERHTVS 607 (848)
Q Consensus 530 ~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~--~~~~i~i~~~~~~~~~~~~ 607 (848)
...+.|.+..+..+...+..+.-+. ..+++.+.|-||||||.+...+-..+-.+ ....+.+||.++.....+.
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle~~-----t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF 223 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLELN-----TSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIF 223 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhhcc-----cCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHH
Confidence 3468888888888888887764332 22468899999999998877655444222 2345788998765543332
Q ss_pred c-ccCCC-CCCcccccc----cchhHHHHcCC-CeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecCCeEEEEe
Q 003094 608 K-LIGSP-PGYVGYTEG----GQLTEAVRRRP-YTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMT 680 (848)
Q Consensus 608 ~-l~g~~-~g~~g~~~~----~~l~~~~~~~~-~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~t 680 (848)
. +++.- ...++...+ ..+..-..+.. .-|+++||+|.+...-+..|+.+++--.+. .++.++|.-
T Consensus 224 ~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp--------~sr~iLiGi 295 (529)
T KOG2227|consen 224 KKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLP--------NSRIILIGI 295 (529)
T ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCC--------cceeeeeee
Confidence 1 11110 001111111 12222223333 458999999999988888888888764432 346666666
Q ss_pred cCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhcc---CeEEEcCCCCHHHHHHHHHHHHHHHH
Q 003094 681 SNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRL---DEMIVFRQLTKLEVKEIADIMLKEVF 757 (848)
Q Consensus 681 sN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~---d~~i~f~~l~~~el~~I~~~~l~~~~ 757 (848)
+|.-. +...|-|.|..|+ ...+.|+||+.+++.+|+...+...
T Consensus 296 ANslD---------------------------------lTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~- 341 (529)
T KOG2227|consen 296 ANSLD---------------------------------LTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEE- 341 (529)
T ss_pred hhhhh---------------------------------HHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcc-
Confidence 66211 2223335555544 3579999999999999997777652
Q ss_pred HHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHHHHH
Q 003094 758 DRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLL 799 (848)
Q Consensus 758 ~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~l 799 (848)
....+-+.++++++.+.....+..|.+-..+++.+
T Consensus 342 -------~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~ai 376 (529)
T KOG2227|consen 342 -------STSIFLNAAIELCARKVAAPSGDLRKALDVCRRAI 376 (529)
T ss_pred -------cccccchHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 22335567899999876655554444444444333
No 431
>PRK12377 putative replication protein; Provisional
Probab=98.63 E-value=7.9e-08 Score=99.99 Aligned_cols=104 Identities=19% Similarity=0.281 Sum_probs=63.4
Q ss_pred CCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccccccccchHHHHHHHHHHHHHhCCCeEEEEc
Q 003094 217 TKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFID 296 (848)
Q Consensus 217 ~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~IL~ID 296 (848)
...+++|+||||||||+++.++++.+... +..+++++..++....+..-........+++.+.... +|+||
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~~~-------g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l~~~d--LLiID 170 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLLAK-------GRSVIVVTVPDVMSRLHESYDNGQSGEKFLQELCKVD--LLVLD 170 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHHHc-------CCCeEEEEHHHHHHHHHHHHhccchHHHHHHHhcCCC--EEEEc
Confidence 34789999999999999999999998642 5667777766655321100000011223445554444 99999
Q ss_pred ccchhhhCCCCCchHHHHHHHhhhhc---CCceEEEEeeChH
Q 003094 297 EVHTLIGAGAAEGAIDAANILKPSLA---RGELQCIGATTLD 335 (848)
Q Consensus 297 Eid~l~~~~~~~~~~~~~~~L~~~l~---~~~v~vI~atn~~ 335 (848)
|++..... ....+.|..+++ .....+|.|||..
T Consensus 171 Dlg~~~~s------~~~~~~l~~ii~~R~~~~~ptiitSNl~ 206 (248)
T PRK12377 171 EIGIQRET------KNEQVVLNQIIDRRTASMRSVGMLTNLN 206 (248)
T ss_pred CCCCCCCC------HHHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 99765321 223445555554 2335667778753
No 432
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.62 E-value=4.1e-07 Score=104.69 Aligned_cols=176 Identities=20% Similarity=0.315 Sum_probs=110.8
Q ss_pred CCCCccCChHHHHHHHHHhcc--CCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccccccccc
Q 003094 195 KLDPVVGRQPQIERVVQILGR--RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRG 272 (848)
Q Consensus 195 ~ld~iiG~~~~~~~l~~~l~~--~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~~~~g 272 (848)
.+..++|....++++.+.+.. ....+++|+|++||||+++|+.+...... .+.+++.++|..+...
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~-------~~~~~v~v~c~~~~~~----- 204 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLSDR-------KDKRFVAINCAAIPEN----- 204 (445)
T ss_pred cccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhCCc-------CCCCeEEEECCCCChH-----
Confidence 455688888888877666543 45678999999999999999999876532 2467899999876310
Q ss_pred hHHHHHHHHHH---------------HHHhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCC-------------
Q 003094 273 EFEERLKKLME---------------EIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARG------------- 324 (848)
Q Consensus 273 ~~~~~l~~l~~---------------~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~------------- 324 (848)
..+ ..+|. .+....+.+|||||++.|. ...+..|..+++.+
T Consensus 205 ~~~---~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~--------~~~q~~l~~~l~~~~~~~~~~~~~~~~ 273 (445)
T TIGR02915 205 LLE---SELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLP--------LNLQAKLLRFLQERVIERLGGREEIPV 273 (445)
T ss_pred HHH---HHhcCCCCCCcCCCccCCCCceeECCCCEEEEechhhCC--------HHHHHHHHHHHhhCeEEeCCCCceeee
Confidence 000 11111 1223446799999999994 44777777777533
Q ss_pred ceEEEEeeChHHHH--hhhhcChhhhcccCCCcCCCCCHHHHHH----HHHHHHHHHhhhhc---CCCChHHHHHHHh
Q 003094 325 ELQCIGATTLDEYR--KHIEKDPALERRFQPVKVPEPSVDETIQ----ILKGLRERYEIHHK---LRYTDEALVSAAQ 393 (848)
Q Consensus 325 ~v~vI~atn~~~~~--~~~~~d~al~~Rf~~i~~~~p~~~e~~~----Il~~~~~~~~~~~~---~~~s~~~l~~l~~ 393 (848)
.+.+|++|+..-.. ..-...+.|..|+..+.+..|+..+|.+ +++.++.++....+ ..++++++..+..
T Consensus 274 ~~rii~~~~~~l~~~~~~~~~~~~L~~~l~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~ 351 (445)
T TIGR02915 274 DVRIVCATNQDLKRMIAEGTFREDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEA 351 (445)
T ss_pred ceEEEEecCCCHHHHHHcCCccHHHHHHhccceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHh
Confidence 36888888765321 1123456677788766666666666654 34444444332222 3456666655544
No 433
>PF13173 AAA_14: AAA domain
Probab=98.61 E-value=1.1e-07 Score=89.24 Aligned_cols=123 Identities=20% Similarity=0.248 Sum_probs=80.1
Q ss_pred CCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccccccccchHHHHHHHHHHHHHhCCCeEEEEccc
Q 003094 219 NNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEV 298 (848)
Q Consensus 219 ~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEi 298 (848)
+.++|+||.|||||++++.+++.+. ...+++++++.+...... ....+...+.+....+..++||||+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~--------~~~~~~yi~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~i~iDEi 70 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL--------PPENILYINFDDPRDRRL----ADPDLLEYFLELIKPGKKYIFIDEI 70 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc--------ccccceeeccCCHHHHHH----hhhhhHHHHHHhhccCCcEEEEehh
Confidence 4578999999999999999998874 135678888766542110 0000222222222235679999999
Q ss_pred chhhhCCCCCchHHHHHHHhhhhcCC-ceEEEEeeChHHHHhhhhcChhhhcccCCCcCCCCCHHH
Q 003094 299 HTLIGAGAAEGAIDAANILKPSLARG-ELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDE 363 (848)
Q Consensus 299 d~l~~~~~~~~~~~~~~~L~~~l~~~-~v~vI~atn~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e 363 (848)
+.+- +....++.+.+.+ .+.+|.|++...... .+....+..|...+++.+++..|
T Consensus 71 q~~~---------~~~~~lk~l~d~~~~~~ii~tgS~~~~l~-~~~~~~l~gr~~~~~l~Plsf~E 126 (128)
T PF13173_consen 71 QYLP---------DWEDALKFLVDNGPNIKIILTGSSSSLLS-KDIAESLAGRVIEIELYPLSFRE 126 (128)
T ss_pred hhhc---------cHHHHHHHHHHhccCceEEEEccchHHHh-hcccccCCCeEEEEEECCCCHHH
Confidence 9982 2566666666655 567777776554321 13456677788888888888776
No 434
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.59 E-value=4.6e-07 Score=104.98 Aligned_cols=175 Identities=22% Similarity=0.309 Sum_probs=109.2
Q ss_pred CCCccCChHHHHHHHHHhcc--CCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccccccccch
Q 003094 196 LDPVVGRQPQIERVVQILGR--RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGE 273 (848)
Q Consensus 196 ld~iiG~~~~~~~l~~~l~~--~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~~~~g~ 273 (848)
+.+++|....++.+.+.+.. ....+++|.|++|||||++|+.+.+.... .+.+++.++|..+...
T Consensus 137 ~~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~-------~~~~~i~i~c~~~~~~------ 203 (469)
T PRK10923 137 TTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPR-------AKAPFIALNMAAIPKD------ 203 (469)
T ss_pred cccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhcCCC-------CCCCeEeeeCCCCCHH------
Confidence 45688988888777666543 45667899999999999999999886532 2567999999876321
Q ss_pred HHHHHHHHHHH---------------HHhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCCc-------------
Q 003094 274 FEERLKKLMEE---------------IKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGE------------- 325 (848)
Q Consensus 274 ~~~~l~~l~~~---------------~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~~------------- 325 (848)
..-..+|.. .....+..|||||++.|. .+.+..|..+++.+.
T Consensus 204 --~~~~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~--------~~~q~~L~~~l~~~~~~~~~~~~~~~~~ 273 (469)
T PRK10923 204 --LIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMP--------LDVQTRLLRVLADGQFYRVGGYAPVKVD 273 (469)
T ss_pred --HHHHHhcCCCCCCCCCCCcCCCCCeeECCCCEEEEeccccCC--------HHHHHHHHHHHhcCcEEeCCCCCeEEee
Confidence 001111111 122345689999999994 447777777776432
Q ss_pred eEEEEeeChHHHH--hhhhcChhhhcccCCCcCCCCCHHHHH----HHHHHHHHHHhhhhc---CCCChHHHHHHHh
Q 003094 326 LQCIGATTLDEYR--KHIEKDPALERRFQPVKVPEPSVDETI----QILKGLRERYEIHHK---LRYTDEALVSAAQ 393 (848)
Q Consensus 326 v~vI~atn~~~~~--~~~~~d~al~~Rf~~i~~~~p~~~e~~----~Il~~~~~~~~~~~~---~~~s~~~l~~l~~ 393 (848)
+.+|++|+..-.. ..-...+.|..||..+.+..|...+|. .++..++.++....+ ..++++++..+..
T Consensus 274 ~rii~~~~~~l~~~~~~~~~~~~L~~~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~ 350 (469)
T PRK10923 274 VRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTR 350 (469)
T ss_pred EEEEEeCCCCHHHHHHcCCchHHHHHHhcceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHh
Confidence 4788888764311 112345778888875555555544444 455555544433221 2356666655544
No 435
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.59 E-value=9.8e-07 Score=93.19 Aligned_cols=138 Identities=17% Similarity=0.137 Sum_probs=95.7
Q ss_pred HHHHHHHHHhccCCCCCc-EEECCCCCcHHHHHHHHHHHhhCCCCCC------CCCCceEEEEeCCcccccccccchHHH
Q 003094 204 PQIERVVQILGRRTKNNP-CLIGEPGVGKTAIAEGLAQRIASGDVPD------TIEGKKVITLDMGLLVAGTKYRGEFEE 276 (848)
Q Consensus 204 ~~~~~l~~~l~~~~~~~i-LL~GppGtGKT~la~~la~~l~~~~~~~------~l~~~~v~~~~~~~l~~~~~~~g~~~~ 276 (848)
...+++...+......|. ||+||+|+||+++|..+|+.+.+...+. ...+.+++.+....- ++. -..+
T Consensus 4 ~~~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~---~~~--I~id 78 (290)
T PRK05917 4 AAWEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGK---GRL--HSIE 78 (290)
T ss_pred HHHHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCC---CCc--CcHH
Confidence 345677777877666665 6899999999999999999998743221 122344554432110 000 1133
Q ss_pred HHHHHHHHHH----hCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhc--CCceEEEEeeChHHHHhhhhcChhhhcc
Q 003094 277 RLKKLMEEIK----QSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLA--RGELQCIGATTLDEYRKHIEKDPALERR 350 (848)
Q Consensus 277 ~l~~l~~~~~----~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~--~~~v~vI~atn~~~~~~~~~~d~al~~R 350 (848)
.++.+.+.+. .++..|++||++|.|. .++.|.|++.+| .+++++|..|+.++ .+.|.++||
T Consensus 79 qiR~l~~~~~~~p~e~~~kv~ii~~ad~mt--------~~AaNaLLK~LEEPp~~~~fiL~~~~~~-----~ll~TI~SR 145 (290)
T PRK05917 79 TPRAIKKQIWIHPYESPYKIYIIHEADRMT--------LDAISAFLKVLEDPPQHGVIILTSAKPQ-----RLPPTIRSR 145 (290)
T ss_pred HHHHHHHHHhhCccCCCceEEEEechhhcC--------HHHHHHHHHHhhcCCCCeEEEEEeCChh-----hCcHHHHhc
Confidence 4555555554 2445799999999994 458999999998 45677777777776 689999999
Q ss_pred cCCCcCCCC
Q 003094 351 FQPVKVPEP 359 (848)
Q Consensus 351 f~~i~~~~p 359 (848)
|+.+.|+++
T Consensus 146 cq~~~~~~~ 154 (290)
T PRK05917 146 SLSIHIPME 154 (290)
T ss_pred ceEEEccch
Confidence 999999875
No 436
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.59 E-value=7.1e-07 Score=91.10 Aligned_cols=116 Identities=24% Similarity=0.213 Sum_probs=82.6
Q ss_pred CeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCCc-eEEEEeeChH-------HHHhhhhcChhhhcccCCCcCCCCCH
Q 003094 290 EIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGE-LQCIGATTLD-------EYRKHIEKDPALERRFQPVKVPEPSV 361 (848)
Q Consensus 290 ~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~~-v~vI~atn~~-------~~~~~~~~d~al~~Rf~~i~~~~p~~ 361 (848)
|.+|||||+|.| +.+...+|.+.++..- .++|.+||+- ++.....++-.|+.|.-.|...+++.
T Consensus 289 pGVLFIDEvHML--------DIEcFsFlNrAlE~d~~PiiimaTNrgit~iRGTn~~SphGiP~D~lDR~lII~t~py~~ 360 (454)
T KOG2680|consen 289 PGVLFIDEVHML--------DIECFSFLNRALENDMAPIIIMATNRGITRIRGTNYRSPHGIPIDLLDRMLIISTQPYTE 360 (454)
T ss_pred cceEEEeeehhh--------hhHHHHHHHHHhhhccCcEEEEEcCCceEEeecCCCCCCCCCcHHHhhhhheeecccCcH
Confidence 789999999999 5667888888887543 3444555531 22223357788899999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCChhhHHHHHHHHhhHHHHh
Q 003094 362 DETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLR 422 (848)
Q Consensus 362 ~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~p~~a~~ll~~a~~~~~~~ 422 (848)
++..+||+..+. ...+.+++++++.+....... .-+-++.|+..+...+.-+
T Consensus 361 ~d~~~IL~iRc~----EEdv~m~~~A~d~Lt~i~~~t-----sLRYai~Lit~a~~~~~kr 412 (454)
T KOG2680|consen 361 EDIKKILRIRCQ----EEDVEMNPDALDLLTKIGEAT-----SLRYAIHLITAASLVCLKR 412 (454)
T ss_pred HHHHHHHHhhhh----hhccccCHHHHHHHHHhhhhh-----hHHHHHHHHHHHHHHHHHh
Confidence 999999998877 578889999998887754322 1224667776665444433
No 437
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.59 E-value=4.5e-08 Score=111.33 Aligned_cols=158 Identities=20% Similarity=0.284 Sum_probs=96.7
Q ss_pred CCCCccCChHHHHHHHHHhccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCccc----ccccc
Q 003094 195 KLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLV----AGTKY 270 (848)
Q Consensus 195 ~ld~iiG~~~~~~~l~~~l~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~----~~~~~ 270 (848)
.+.+++|+...++.+. +......+++|+||||+|||++++.++..+........+....++.+...... ....+
T Consensus 189 d~~~v~Gq~~~~~al~--laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~~~~~rPf 266 (506)
T PRK09862 189 DLSDVIGQEQGKRGLE--ITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPF 266 (506)
T ss_pred CeEEEECcHHHHhhhh--eeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccccCCcCCCCc
Confidence 6777889988887763 34456688999999999999999999987653221112222222221100000 00000
Q ss_pred c----chHH-HHH----HHHHHHHHhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCCc---------------e
Q 003094 271 R----GEFE-ERL----KKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGE---------------L 326 (848)
Q Consensus 271 ~----g~~~-~~l----~~l~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~~---------------v 326 (848)
+ ..+. ..+ ..--..+....+.+|||||++.+- ...++.|++.++.+. +
T Consensus 267 r~ph~~~s~~~l~GGg~~~~pG~l~~A~gGvLfLDEi~e~~--------~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f 338 (506)
T PRK09862 267 RSPHHSASLTAMVGGGAIPGPGEISLAHNGVLFLDELPEFE--------RRTLDALREPIESGQIHLSRTRAKITYPARF 338 (506)
T ss_pred cCCCccchHHHHhCCCceehhhHhhhccCCEEecCCchhCC--------HHHHHHHHHHHHcCcEEEecCCcceeccCCE
Confidence 0 0000 000 001123444556799999999873 457888888876433 6
Q ss_pred EEEEeeChHHHHhh----------------hhcChhhhcccC-CCcCCCCCHH
Q 003094 327 QCIGATTLDEYRKH----------------IEKDPALERRFQ-PVKVPEPSVD 362 (848)
Q Consensus 327 ~vI~atn~~~~~~~----------------~~~d~al~~Rf~-~i~~~~p~~~ 362 (848)
.+|+++|+.+...+ -.++.++++||+ .+.++.|+.+
T Consensus 339 ~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~ 391 (506)
T PRK09862 339 QLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPG 391 (506)
T ss_pred EEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHH
Confidence 99999998752111 247889999998 7899998876
No 438
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.58 E-value=9.8e-08 Score=90.30 Aligned_cols=119 Identities=24% Similarity=0.238 Sum_probs=69.3
Q ss_pred eEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhc---ccC-CCCCCcccccccchhHHHHcCCCeEE
Q 003094 562 ASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSK---LIG-SPPGYVGYTEGGQLTEAVRRRPYTVV 637 (848)
Q Consensus 562 ~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~---l~g-~~~g~~g~~~~~~l~~~~~~~~~~Vl 637 (848)
.+++|+||||||||++++.++..+......++.+++........... .+. ......+......+...++.....||
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi 82 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVL 82 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 35899999999999999999999854444678888776544322210 000 10111111112334555555556999
Q ss_pred EEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCC
Q 003094 638 LFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNV 683 (848)
Q Consensus 638 ~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~ 683 (848)
|+||++.+.............. ...........+..+|+++|.
T Consensus 83 iiDei~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 83 ILDEITSLLDAEQEALLLLLEE---LRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred EEECCcccCCHHHHHHHHhhhh---hHHHHHHHhcCCCEEEEEeCC
Confidence 9999999988766655443100 000000011246688888884
No 439
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.54 E-value=5.7e-07 Score=101.31 Aligned_cols=223 Identities=15% Similarity=0.187 Sum_probs=123.0
Q ss_pred HHHHHhhccccChHHHHHHHHHHHHHHHc-cCCC--CCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEeccccc
Q 003094 524 KMEETLHKRVIGQDEAVKAISRAIRRARV-GLKN--PNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEF 600 (848)
Q Consensus 524 ~l~~~l~~~vigq~~~~~~l~~~~~~~~~-~~~~--~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~ 600 (848)
.|.+-+--.|.|++++++.+.-.+--... .... .-+.--++||+|.||||||.+-+.+++.+-+ ....+-..+.-
T Consensus 422 lLa~SiAPsIye~edvKkglLLqLfGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pR--g~yTSGkGsSa 499 (804)
T KOG0478|consen 422 LLARSIAPSIYELEDVKKGLLLQLFGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPR--GVYTSGKGSSA 499 (804)
T ss_pred HHHHhhchhhhcccchhhhHHHHHhcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCc--ceeecCCccch
Confidence 34445566788888887776654421100 0000 0112247999999999999999999998721 11111111111
Q ss_pred ccccchhcccCCCCCCcccc-cccch---hHHHHcCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecCCeE
Q 003094 601 MERHTVSKLIGSPPGYVGYT-EGGQL---TEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTL 676 (848)
Q Consensus 601 ~~~~~~~~l~g~~~g~~g~~-~~~~l---~~~~~~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~i 676 (848)
.|-.. |+..+ +.+++ .+++--+.+||-.|||+||++.+..+.|.++||..+++... +=
T Consensus 500 ---------vGLTa-yVtrd~dtkqlVLesGALVLSD~GiCCIDEFDKM~dStrSvLhEvMEQQTvSIAK--------AG 561 (804)
T KOG0478|consen 500 ---------VGLTA-YVTKDPDTRQLVLESGALVLSDNGICCIDEFDKMSDSTRSVLHEVMEQQTLSIAK--------AG 561 (804)
T ss_pred ---------hccee-eEEecCccceeeeecCcEEEcCCceEEchhhhhhhHHHHHHHHHHHHHhhhhHhh--------cc
Confidence 01100 22211 11111 23444577899999999999999999999999987766443 33
Q ss_pred EEEecCCCchhhhccCcc-cccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeE-EEcCCCCHHHHHHHHHHHHH
Q 003094 677 LIMTSNVGSSVIEKGGRR-IGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEM-IVFRQLTKLEVKEIADIMLK 754 (848)
Q Consensus 677 iI~tsN~~~~~i~~~~~~-~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~-i~f~~l~~~el~~I~~~~l~ 754 (848)
+|.+-|.-.+++...... -.|..+....+. -.++|.|++|||-+ +.+.+.++.-=+.+.+++..
T Consensus 562 II~sLNAR~SVLAaANP~~skynp~k~i~eN--------------I~LpptLLSRFDLIylllD~~DE~~Dr~La~Hivs 627 (804)
T KOG0478|consen 562 IIASLNARCSVLAAANPIRSKYNPNKSIIEN--------------INLPPTLLSRFDLIFLLLDKPDERSDRRLADHIVA 627 (804)
T ss_pred eeeeccccceeeeeeccccccCCCCCchhhc--------------cCCChhhhhhhcEEEEEecCcchhHHHHHHHHHHH
Confidence 444444433333221100 001111110000 13799999999886 66777766522334444443
Q ss_pred HHH-------------------HHHhcCCCeEeecHHHHHHHHHc
Q 003094 755 EVF-------------------DRLKTKDIELQVTERFRERVVEE 780 (848)
Q Consensus 755 ~~~-------------------~~~~~~~~~l~i~~~a~~~l~~~ 780 (848)
-+. -++..+.+...+++++.+.+...
T Consensus 628 Ly~e~~~~~~~~~~d~~~lr~yi~yArk~i~p~l~~ea~~~l~~a 672 (804)
T KOG0478|consen 628 LYPETGEKQGSEAIDMNLLRDYIRYARKNIHPALSPEASQALIQA 672 (804)
T ss_pred hcccccccchhHHHhHHHHHHHHHHHhccCCccccHHHHHHHHHH
Confidence 222 22334445667888888888764
No 440
>PRK08116 hypothetical protein; Validated
Probab=98.54 E-value=4e-07 Score=96.49 Aligned_cols=138 Identities=22% Similarity=0.263 Sum_probs=76.9
Q ss_pred CCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCccccccc--ccchHHHHHHHHHHHHHhCCCeEEEEc
Q 003094 219 NNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTK--YRGEFEERLKKLMEEIKQSDEIILFID 296 (848)
Q Consensus 219 ~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~~--~~g~~~~~l~~l~~~~~~~~~~IL~ID 296 (848)
.+++|+|++|+|||+|+.++++.+... +.++++++...+....+ +..........+++.+...+ +|+||
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~-------~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~~~d--lLviD 185 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEK-------GVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLVNAD--LLILD 185 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc-------CCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhcCCC--EEEEe
Confidence 459999999999999999999998642 46788888765542111 00001111223444444443 99999
Q ss_pred ccchhhhCCCCCchHHHHHHHhhhhcCCceEEEEeeChHHHHhhhhcChhhhcccC----CCcCCCCCHHHHHHHHHH
Q 003094 297 EVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATTLDEYRKHIEKDPALERRFQ----PVKVPEPSVDETIQILKG 370 (848)
Q Consensus 297 Eid~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~atn~~~~~~~~~~d~al~~Rf~----~i~~~~p~~~e~~~Il~~ 370 (848)
|++..... ......+.+++...... +..+|.|||.....-...++.++.+|+. .|.++-++. |..+.+.
T Consensus 186 Dlg~e~~t--~~~~~~l~~iin~r~~~-~~~~IiTsN~~~~eL~~~~~~ri~sRl~e~~~~v~~~g~d~--R~~~~~e 258 (268)
T PRK08116 186 DLGAERDT--EWAREKVYNIIDSRYRK-GLPTIVTTNLSLEELKNQYGKRIYDRILEMCTPVENEGKSY--RKEIAKE 258 (268)
T ss_pred cccCCCCC--HHHHHHHHHHHHHHHHC-CCCEEEECCCCHHHHHHHHhHHHHHHHHHcCEEEEeeCcCh--hHHHHHH
Confidence 99653111 11112233333333333 3456667765432111124688888862 466665554 4444443
No 441
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.53 E-value=5.7e-08 Score=92.53 Aligned_cols=129 Identities=24% Similarity=0.392 Sum_probs=79.5
Q ss_pred cCChHHHHHHHHHhcc--CCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccccccccchHHHH
Q 003094 200 VGRQPQIERVVQILGR--RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEER 277 (848)
Q Consensus 200 iG~~~~~~~l~~~l~~--~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~~~~g~~~~~ 277 (848)
||....++++.+.+.. ....+++|+|++||||+++|+.|...-... ...++.+++....
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~-------~~~~~~~~~~~~~------------ 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGRA-------NGPFIVIDCASLP------------ 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTTC-------CS-CCCCCHHCTC------------
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCcc-------CCCeEEechhhCc------------
Confidence 4666777777666554 567889999999999999999999865331 2233334443321
Q ss_pred HHHHHHHHHhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhc---CCceEEEEeeChHHH--HhhhhcChhhhcccC
Q 003094 278 LKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLA---RGELQCIGATTLDEY--RKHIEKDPALERRFQ 352 (848)
Q Consensus 278 l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~---~~~v~vI~atn~~~~--~~~~~~d~al~~Rf~ 352 (848)
..+++. ..+..|||+|+|.|. .+.+..|...+. ..++.+|++++.+-. ...-.+++.|..||.
T Consensus 62 -~~~l~~---a~~gtL~l~~i~~L~--------~~~Q~~L~~~l~~~~~~~~RlI~ss~~~l~~l~~~~~~~~~L~~~l~ 129 (138)
T PF14532_consen 62 -AELLEQ---AKGGTLYLKNIDRLS--------PEAQRRLLDLLKRQERSNVRLIASSSQDLEELVEEGRFSPDLYYRLS 129 (138)
T ss_dssp -HHHHHH---CTTSEEEEECGCCS---------HHHHHHHHHHHHHCTTTTSEEEEEECC-CCCHHHHSTHHHHHHHHCS
T ss_pred -HHHHHH---cCCCEEEECChHHCC--------HHHHHHHHHHHHhcCCCCeEEEEEeCCCHHHHhhccchhHHHHHHhC
Confidence 233343 356699999999994 446666666664 356788887765431 122235677777887
Q ss_pred CCcCCCC
Q 003094 353 PVKVPEP 359 (848)
Q Consensus 353 ~i~~~~p 359 (848)
.+.+..|
T Consensus 130 ~~~i~lP 136 (138)
T PF14532_consen 130 QLEIHLP 136 (138)
T ss_dssp TCEEEE-
T ss_pred CCEEeCC
Confidence 5555444
No 442
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.53 E-value=7.1e-07 Score=102.40 Aligned_cols=212 Identities=17% Similarity=0.160 Sum_probs=121.3
Q ss_pred hhhhhhhhcCCCCCccCChHHHHHHHHHhccC----C-CCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEE
Q 003094 185 TNLTKLAEEGKLDPVVGRQPQIERVVQILGRR----T-KNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITL 259 (848)
Q Consensus 185 ~~l~~~~~~~~ld~iiG~~~~~~~l~~~l~~~----~-~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~ 259 (848)
..|.++++|.+++++..+.+-+++|..+|... . .+-+||+|||||||||+++.||+++. ..+.+.
T Consensus 7 ~~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg----------~~v~Ew 76 (519)
T PF03215_consen 7 EPWVEKYAPKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG----------FEVQEW 76 (519)
T ss_pred CccchhcCCCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC----------CeeEEe
Confidence 46999999999999999998888888877642 2 22346789999999999999999984 333332
Q ss_pred e-CCccc----cccccc------chHHHH---HHHH-HHHHH-----------hCCCeEEEEcccchhhhCCCCCchHHH
Q 003094 260 D-MGLLV----AGTKYR------GEFEER---LKKL-MEEIK-----------QSDEIILFIDEVHTLIGAGAAEGAIDA 313 (848)
Q Consensus 260 ~-~~~l~----~~~~~~------g~~~~~---l~~l-~~~~~-----------~~~~~IL~IDEid~l~~~~~~~~~~~~ 313 (848)
. ...+. ....+. ..+..+ +..+ +...+ ...+.||+|||+-.++... ...+
T Consensus 77 ~np~~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~----~~~f 152 (519)
T PF03215_consen 77 INPVSFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRD----TSRF 152 (519)
T ss_pred cCCCCccccccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccchh----HHHH
Confidence 1 11100 000000 001111 1111 11111 1246799999998765331 2567
Q ss_pred HHHHhhhhcCC---ceEEEEeeC--hH---HHH-----hhhhcChhhhccc--CCCcCCCCCHHHHHHHHHHHHHHHh-h
Q 003094 314 ANILKPSLARG---ELQCIGATT--LD---EYR-----KHIEKDPALERRF--QPVKVPEPSVDETIQILKGLRERYE-I 377 (848)
Q Consensus 314 ~~~L~~~l~~~---~v~vI~atn--~~---~~~-----~~~~~d~al~~Rf--~~i~~~~p~~~e~~~Il~~~~~~~~-~ 377 (848)
.+.|+.++..+ .+++|.+-+ .. ... ...-+++.++... ..|.|.+-+..-....|..++..-. .
T Consensus 153 ~~~L~~~l~~~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~FNpIa~T~mkKaL~rI~~~E~~~ 232 (519)
T PF03215_consen 153 REALRQYLRSSRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKFNPIAPTFMKKALKRILKKEARS 232 (519)
T ss_pred HHHHHHHHHcCCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHHhhh
Confidence 77788777643 344444411 00 000 0012456666643 5899999999888888887776421 1
Q ss_pred hhc-CCCC--hHHHHHHHhhhhcccccCCChhhHHHHHHHHh
Q 003094 378 HHK-LRYT--DEALVSAAQLSYQYISDRFLPDKAIDLIDEAG 416 (848)
Q Consensus 378 ~~~-~~~s--~~~l~~l~~~s~~~~~~~~~p~~a~~ll~~a~ 416 (848)
..+ .... .+.++.++..+.|.+.. |+.-|...|
T Consensus 233 ~~~~~~~p~~~~~l~~I~~~s~GDIRs------AIn~LQf~~ 268 (519)
T PF03215_consen 233 SSGKNKVPDKQSVLDSIAESSNGDIRS------AINNLQFWC 268 (519)
T ss_pred hcCCccCCChHHHHHHHHHhcCchHHH------HHHHHHHHh
Confidence 111 1222 34577777777665544 555444443
No 443
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=98.52 E-value=1.1e-06 Score=99.35 Aligned_cols=191 Identities=23% Similarity=0.315 Sum_probs=116.4
Q ss_pred hhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecc----ccccc-c
Q 003094 529 LHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDM----SEFME-R 603 (848)
Q Consensus 529 l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~----~~~~~-~ 603 (848)
.+++++|+++++++|...+..+..++..++ ..++|.||||+|||+||+.|++.+-. .+++.+.. +.+.+ +
T Consensus 74 fF~d~yGlee~ieriv~~l~~Aa~gl~~~~---~IL~LvGPpG~GKSsLa~~la~~le~--~~~Y~~kg~~~~sP~~e~P 148 (644)
T PRK15455 74 AFEEFYGMEEAIEQIVSYFRHAAQGLEEKK---QILYLLGPVGGGKSSLAERLKSLMER--VPIYVLKANGERSPVNESP 148 (644)
T ss_pred chhcccCcHHHHHHHHHHHHHHHHhcCCCC---ceEEEecCCCCCchHHHHHHHHHHHh--CcceeecCCCCCCCCCCCC
Confidence 356799999999999999988877775533 35899999999999999999998721 13333322 00000 0
Q ss_pred ------c----chhcccCCC---------------------------------------------CC---------Cccc
Q 003094 604 ------H----TVSKLIGSP---------------------------------------------PG---------YVGY 619 (848)
Q Consensus 604 ------~----~~~~l~g~~---------------------------------------------~g---------~~g~ 619 (848)
+ .....+|-+ |+ .+|.
T Consensus 149 L~L~p~~~~~~~le~~~gi~~r~i~g~lsP~~r~rL~e~~Gd~~~~~V~r~~~S~~~riGIg~~eP~D~~nQD~s~L~G~ 228 (644)
T PRK15455 149 LGLFDPDEDGPILEEEYGIPRRYLGTIMSPWAVKRLHEFGGDISKFRVVKVYPSILRQIAIAKTEPGDENNQDISSLVGK 228 (644)
T ss_pred CCCCChhhhHHHHHHHhCCCccccCCCCCHHHHHHHHHhCCCchheEEEEEeeccccceEEEecCCCCCCCCChhHhccc
Confidence 0 000000000 00 0000
Q ss_pred ccccc-------------hhHHHHcCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCch
Q 003094 620 TEGGQ-------------LTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSS 686 (848)
Q Consensus 620 ~~~~~-------------l~~~~~~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~ 686 (848)
-..+. +.+.+..+..|++=|=|+-|++..++.-||.+.++|.+...++-..-+-+.+||+.||-..
T Consensus 229 vdi~kl~~ys~~dp~aysf~G~L~~aNrGl~EFvEm~K~~~~~L~~LLtatQE~~i~~~~~~~~i~~D~vIiaHsNE~E- 307 (644)
T PRK15455 229 VDIRKLEHYAQNDPDAYSYSGGLCRANQGLLEFVEMFKAPIKVLHPLLTATQEGNYNGTEGIGAIPFDGIILAHSNESE- 307 (644)
T ss_pred eeHHhhhccCCCCCccccCCchhhhccCCcEeeHHHhcCcHHHHHHhcCCCccCcccCCCCcceeccceeEEecCCHHH-
Confidence 00000 1223334555677777999999999999999999999876555434445889999998211
Q ss_pred hhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCH-HHHHHHHHHHHH
Q 003094 687 VIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTK-LEVKEIADIMLK 754 (848)
Q Consensus 687 ~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~-~el~~I~~~~l~ 754 (848)
+..+ .......+|++|+ .+|.+|.... .+=.+|-+..+.
T Consensus 308 ---------------------~~~F-------~~nk~nEA~~DRi-~~V~VPY~lr~~eE~kIYeKll~ 347 (644)
T PRK15455 308 ---------------------WQTF-------RNNKNNEAFLDRI-YIVKVPYCLRVSEEIKIYEKLLR 347 (644)
T ss_pred ---------------------HHHH-------hcCccchhhhceE-EEEeCCccCChhHHHHHHHHHhc
Confidence 1100 1123568999999 7788776533 333445555553
No 444
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.51 E-value=3.4e-07 Score=95.10 Aligned_cols=114 Identities=19% Similarity=0.295 Sum_probs=68.2
Q ss_pred CCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccccccccchH---HHHHHHHHHHHHhCCCeEEEE
Q 003094 219 NNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEF---EERLKKLMEEIKQSDEIILFI 295 (848)
Q Consensus 219 ~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~~~~g~~---~~~l~~l~~~~~~~~~~IL~I 295 (848)
.+++|+|+||||||+++.++++.+... +..++.++..++....+ ..+ ......+++.+.... +|+|
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~-------g~~v~~it~~~l~~~l~--~~~~~~~~~~~~~l~~l~~~d--lLvI 168 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLR-------GKSVLIITVADIMSAMK--DTFSNSETSEEQLLNDLSNVD--LLVI 168 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhc-------CCeEEEEEHHHHHHHHH--HHHhhccccHHHHHHHhccCC--EEEE
Confidence 579999999999999999999998642 56788888766653111 111 112234455555443 9999
Q ss_pred cccchhhhCCCCCchHHHHHHHhhhhc---CCceEEEEeeChHH--HHhhhhcChhhhccc
Q 003094 296 DEVHTLIGAGAAEGAIDAANILKPSLA---RGELQCIGATTLDE--YRKHIEKDPALERRF 351 (848)
Q Consensus 296 DEid~l~~~~~~~~~~~~~~~L~~~l~---~~~v~vI~atn~~~--~~~~~~~d~al~~Rf 351 (848)
||++..... .-....|..+++ .....+|.+||... +.. .++..+.+|+
T Consensus 169 DDig~~~~s------~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l~~--~~g~ri~sRl 221 (244)
T PRK07952 169 DEIGVQTES------RYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMTK--LLGERVMDRM 221 (244)
T ss_pred eCCCCCCCC------HHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHHHH--HhChHHHHHH
Confidence 999886311 112234444444 22456667776533 222 2345555555
No 445
>PF13173 AAA_14: AAA domain
Probab=98.51 E-value=5.1e-07 Score=84.73 Aligned_cols=121 Identities=24% Similarity=0.335 Sum_probs=79.6
Q ss_pred EEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhcccCCCCCCcccccccchhHHHHc---CCCeEEEE
Q 003094 563 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRR---RPYTVVLF 639 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~---~~~~Vl~l 639 (848)
.++++||.|||||++++.+++.+. ....++.+|+.......... .. +.+.+.+ ....+|||
T Consensus 4 ~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~~~~~~~~~~~~--------------~~-~~~~~~~~~~~~~~~i~i 67 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLLKQLAKDLL-PPENILYINFDDPRDRRLAD--------------PD-LLEYFLELIKPGKKYIFI 67 (128)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhc-ccccceeeccCCHHHHHHhh--------------hh-hHHHHHHhhccCCcEEEE
Confidence 478999999999999999998874 45677888887654321100 00 1122221 25679999
Q ss_pred cCCCcCChHHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHH
Q 003094 640 DEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEEL 719 (848)
Q Consensus 640 DEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l 719 (848)
|||+.++ +....+..+.+++ .+..||+|+..... +
T Consensus 68 DEiq~~~-~~~~~lk~l~d~~------------~~~~ii~tgS~~~~--------------------------------l 102 (128)
T PF13173_consen 68 DEIQYLP-DWEDALKFLVDNG------------PNIKIILTGSSSSL--------------------------------L 102 (128)
T ss_pred ehhhhhc-cHHHHHHHHHHhc------------cCceEEEEccchHH--------------------------------H
Confidence 9999997 6777777777764 24456666642111 1
Q ss_pred HhhcChhhhhccCeEEEcCCCCHHHH
Q 003094 720 KQYFRPEFLNRLDEMIVFRQLTKLEV 745 (848)
Q Consensus 720 ~~~~~~~ll~R~d~~i~f~~l~~~el 745 (848)
.......+.+|. ..+.+.|++..|+
T Consensus 103 ~~~~~~~l~gr~-~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 103 SKDIAESLAGRV-IEIELYPLSFREF 127 (128)
T ss_pred hhcccccCCCeE-EEEEECCCCHHHh
Confidence 112335677888 6899999998775
No 446
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.49 E-value=2.3e-06 Score=88.26 Aligned_cols=132 Identities=22% Similarity=0.326 Sum_probs=78.9
Q ss_pred EEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhcccCCCCCCcccccccchhHHHHcCCCeEEEEcCCC
Q 003094 564 FIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIE 643 (848)
Q Consensus 564 lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid 643 (848)
-.++||+|||||++++.+|+.+ +..++.+||++..+...+.+ .+.+.+.. ++++.|||++
T Consensus 35 ~~~~GpagtGKtetik~La~~l---G~~~~vfnc~~~~~~~~l~r---------------il~G~~~~--GaW~cfdefn 94 (231)
T PF12774_consen 35 GALSGPAGTGKTETIKDLARAL---GRFVVVFNCSEQMDYQSLSR---------------ILKGLAQS--GAWLCFDEFN 94 (231)
T ss_dssp EEEESSTTSSHHHHHHHHHHCT---T--EEEEETTSSS-HHHHHH---------------HHHHHHHH--T-EEEEETCC
T ss_pred CCCcCCCCCCchhHHHHHHHHh---CCeEEEecccccccHHHHHH---------------HHHHHhhc--Cchhhhhhhh
Confidence 4679999999999999999998 88999999999776554443 23344443 5799999999
Q ss_pred cCChHHHHHHHhhhcC---------cEEEcCCCceeecC-CeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHH
Q 003094 644 KAHPDVFNMMLQILED---------GRLTDSKGRTVDFK-NTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKS 713 (848)
Q Consensus 644 ~l~~~~~~~Ll~~le~---------g~~~~~~g~~v~~~-~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~ 713 (848)
+++.+++..+.+.+.. ..+. ..|..+... ++-+++|.|.+.. |
T Consensus 95 rl~~~vLS~i~~~i~~i~~al~~~~~~~~-~~g~~i~l~~~~~iFiT~np~y~---------g----------------- 147 (231)
T PF12774_consen 95 RLSEEVLSVISQQIQSIQDALRAKQKSFT-LEGQEIKLNPNCGIFITMNPGYA---------G----------------- 147 (231)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHCTSSEEE-ETTCEEE--TT-EEEEEE-B-CC---------C-----------------
T ss_pred hhhHHHHHHHHHHHHHHHHhhcccccccc-cCCCEEEEccceeEEEeeccccC---------C-----------------
Confidence 9999877777555432 2222 234444443 5666677774321 0
Q ss_pred HHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHH
Q 003094 714 LVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIA 749 (848)
Q Consensus 714 ~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~ 749 (848)
...+++.|..-| ..|.+..++...+.++.
T Consensus 148 ------r~~LP~nLk~lF-Rpvam~~PD~~~I~ei~ 176 (231)
T PF12774_consen 148 ------RSELPENLKALF-RPVAMMVPDLSLIAEIL 176 (231)
T ss_dssp ------C--S-HHHCTTE-EEEE--S--HHHHHHHH
T ss_pred ------cccCCHhHHHHh-heeEEeCCCHHHHHHHH
Confidence 012555555555 66777777666655544
No 447
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.48 E-value=1.8e-07 Score=102.30 Aligned_cols=253 Identities=17% Similarity=0.195 Sum_probs=126.8
Q ss_pred HHHHHhhccccChHHHHHHHHHHHHHHHccCCCC----CCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccc
Q 003094 524 KMEETLHKRVIGQDEAVKAISRAIRRARVGLKNP----NRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSE 599 (848)
Q Consensus 524 ~l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~~----~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~ 599 (848)
.+-+.+--.++|.+.++..|.-.+-.... ...+ .+...|+||+|.||||||.+.+.+++.. ..-+......
T Consensus 17 ~l~~s~aP~i~g~~~iK~aill~L~~~~~-~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~----pr~v~~~g~~ 91 (331)
T PF00493_consen 17 RLANSIAPSIYGHEDIKKAILLQLFGGVE-KNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLA----PRSVYTSGKG 91 (331)
T ss_dssp CCHHHCSSTTTT-HHHHHHHCCCCTT--S-CCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-----SSEEEEECCG
T ss_pred HHHHHhCCcCcCcHHHHHHHHHHHHhccc-cccccccccccccceeeccchhhhHHHHHHHHHhhC----CceEEECCCC
Confidence 34455566788887776555433321110 0111 1233589999999999999999887654 1222222211
Q ss_pred cccccchhcccCCCCCCcccccccchhHHHHcCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCc-eee-cCCeEE
Q 003094 600 FMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGR-TVD-FKNTLL 677 (848)
Q Consensus 600 ~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~-~v~-~~~~ii 677 (848)
.. ...|+..........+-..-.+++-.+.+||++|||+|++..+..+.|+++||.+.++-..+. ... ..++-|
T Consensus 92 ~s----~~gLta~~~~d~~~~~~~leaGalvlad~GiccIDe~dk~~~~~~~~l~eaMEqq~isi~kagi~~~l~ar~sv 167 (331)
T PF00493_consen 92 SS----AAGLTASVSRDPVTGEWVLEAGALVLADGGICCIDEFDKMKEDDRDALHEAMEQQTISIAKAGIVTTLNARCSV 167 (331)
T ss_dssp ST----CCCCCEEECCCGGTSSECEEE-HHHHCTTSEEEECTTTT--CHHHHHHHHHHHCSCEEECTSSSEEEEE---EE
T ss_pred cc----cCCccceeccccccceeEEeCCchhcccCceeeecccccccchHHHHHHHHHHcCeeccchhhhcccccchhhh
Confidence 10 001111100000000001113456667889999999999999999999999999999877643 222 247888
Q ss_pred EEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEc-CCCCHHHHHHHHHHHHHHH
Q 003094 678 IMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVF-RQLTKLEVKEIADIMLKEV 756 (848)
Q Consensus 678 I~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f-~~l~~~el~~I~~~~l~~~ 756 (848)
++++|..... |+......+. -.+++.|++|||-++.+ .+.+++.=..+.++++...
T Consensus 168 laa~NP~~g~---------~~~~~~~~~n--------------i~l~~~LLSRFDLif~l~D~~d~~~D~~la~~il~~~ 224 (331)
T PF00493_consen 168 LAAANPKFGR---------YDPNKSLSEN--------------INLPPPLLSRFDLIFLLRDKPDEEEDERLAEHILDSH 224 (331)
T ss_dssp EEEE--TT-----------S-TTS-CGCC--------------T-S-CCCHCC-SEEECC--TTT-HHHHHHHHHHHTTT
T ss_pred HHHHhhhhhh---------cchhhhhHHh--------------cccchhhHhhcCEEEEeccccccccccccceEEEecc
Confidence 8999854321 1111110000 12678999999988664 5666655566666666543
Q ss_pred HHH-------------------------HhcCCCeEeecHHHHHHHHHccC------------CCCCCchHHHHHHHHHH
Q 003094 757 FDR-------------------------LKTKDIELQVTERFRERVVEEGY------------NPSYGARPLRRAIMRLL 799 (848)
Q Consensus 757 ~~~-------------------------~~~~~~~l~i~~~a~~~l~~~~~------------~~~~g~r~L~~~i~~~l 799 (848)
... +.+......+++++.+.|.+. | ..+...|.|+..++ +
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~lr~yI~yar~~~~P~ls~ea~~~I~~~-Yv~lR~~~~~~~~~~~iT~R~LeSLIR--L 301 (331)
T PF00493_consen 225 RNGKKSKEKKIKKNDKPISEDLLRKYIAYARQNIHPVLSEEAKELIINY-YVELRKESKSNNKSIPITIRQLESLIR--L 301 (331)
T ss_dssp ---S--------SSS-TT-HCCCHHHHHHHHHHC--EE-HHCHHHHHHH-HCCCCHCHHCHSS-B-SSCCCCCHHHH--H
T ss_pred ccccccccccccccCCccCHHHHHHHHHHHHhhcccccCHHHHHHHHHH-HHHhcccccccccccccchhhHHHHHH--H
Confidence 221 011134556888888888763 1 12334566666665 5
Q ss_pred HHHHHHHHHccc
Q 003094 800 EDSMAEKMLARE 811 (848)
Q Consensus 800 ~~~l~~~~l~~~ 811 (848)
..+.++.-++..
T Consensus 302 seA~AKl~lr~~ 313 (331)
T PF00493_consen 302 SEAHAKLRLRDE 313 (331)
T ss_dssp HHHHHHCTTSSE
T ss_pred HHHHHHHhccCc
Confidence 555555555543
No 448
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.47 E-value=6.5e-07 Score=92.99 Aligned_cols=105 Identities=22% Similarity=0.302 Sum_probs=67.0
Q ss_pred EEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhcccCCCCCCcccccccchhHHHHcCCCeEEEEcCC
Q 003094 563 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEI 642 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEi 642 (848)
+++|+|+||||||+++.+|+..+...+..++.++..++....... +.. .......+.+.+.+ ..+|+|||+
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~--~~~-----~~~~~~~~l~~l~~--~dlLvIDDi 171 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDT--FSN-----SETSEEQLLNDLSN--VDLLVIDEI 171 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHH--Hhh-----ccccHHHHHHHhcc--CCEEEEeCC
Confidence 589999999999999999999987667777777776664321110 000 00011233444443 459999999
Q ss_pred CcCChH--HHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCch
Q 003094 643 EKAHPD--VFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSS 686 (848)
Q Consensus 643 d~l~~~--~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~ 686 (848)
+..... ....|.++++... . .+--.|+|||....
T Consensus 172 g~~~~s~~~~~~l~~Ii~~Ry-~---------~~~~tiitSNl~~~ 207 (244)
T PRK07952 172 GVQTESRYEKVIINQIVDRRS-S---------SKRPTGMLTNSNME 207 (244)
T ss_pred CCCCCCHHHHHHHHHHHHHHH-h---------CCCCEEEeCCCCHH
Confidence 877543 4557777876522 1 13357789996554
No 449
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.47 E-value=1.9e-06 Score=99.47 Aligned_cols=175 Identities=15% Similarity=0.206 Sum_probs=106.6
Q ss_pred CCCccCChHHHHHHHHHhcc--CCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccccccccch
Q 003094 196 LDPVVGRQPQIERVVQILGR--RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGE 273 (848)
Q Consensus 196 ld~iiG~~~~~~~l~~~l~~--~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~~~~g~ 273 (848)
+..++|....+..+.+.+.. ....++++.|++||||+++|+.+...... .+.+++.++|..+... .
T Consensus 142 ~~~ii~~S~~~~~~~~~~~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~-------~~~~~~~i~c~~~~~~-----~ 209 (457)
T PRK11361 142 WGHILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNSRR-------AKGPFIKVNCAALPES-----L 209 (457)
T ss_pred ccceecccHHHhHHHHHHHHHcCCCcEEEEEcCCCccHHHHHHHHHHhCCC-------CCCCeEEEECCCCCHH-----H
Confidence 34577877777766655432 45578999999999999999999875432 2567899999876321 0
Q ss_pred HHHHHHHHHH---------------HHHhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCC-------------c
Q 003094 274 FEERLKKLME---------------EIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARG-------------E 325 (848)
Q Consensus 274 ~~~~l~~l~~---------------~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~-------------~ 325 (848)
. -..+|. ......+.+|||||++.|. ...+..|..+++.+ .
T Consensus 210 ~---~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ld~i~~l~--------~~~q~~L~~~l~~~~~~~~~~~~~~~~~ 278 (457)
T PRK11361 210 L---ESELFGHEKGAFTGAQTLRQGLFERANEGTLLLDEIGEMP--------LVLQAKLLRILQEREFERIGGHQTIKVD 278 (457)
T ss_pred H---HHHhcCCCCCCCCCCCCCCCCceEECCCCEEEEechhhCC--------HHHHHHHHHHHhcCcEEeCCCCceeeec
Confidence 0 011111 1222445699999999994 44677777776533 2
Q ss_pred eEEEEeeChHHHH--hhhhcChhhhcccCCCcCCCCCHHHHHH----HHHHHHHHHhhhhc---CCCChHHHHHHHh
Q 003094 326 LQCIGATTLDEYR--KHIEKDPALERRFQPVKVPEPSVDETIQ----ILKGLRERYEIHHK---LRYTDEALVSAAQ 393 (848)
Q Consensus 326 v~vI~atn~~~~~--~~~~~d~al~~Rf~~i~~~~p~~~e~~~----Il~~~~~~~~~~~~---~~~s~~~l~~l~~ 393 (848)
+.+|++|+..-.. ..-...+.+..|+..+.+..|+..+|.+ ++..++.++....+ ..++++++..+..
T Consensus 279 ~rii~~t~~~l~~~~~~g~~~~~l~~~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~ 355 (457)
T PRK11361 279 IRIIAATNRDLQAMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTA 355 (457)
T ss_pred eEEEEeCCCCHHHHHHcCCchHHHHHHhccceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHc
Confidence 6889988765311 1112455677778766666666665544 33444444332211 2456666655544
No 450
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.47 E-value=4.7e-06 Score=95.73 Aligned_cols=229 Identities=17% Similarity=0.200 Sum_probs=119.8
Q ss_pred HHHHhhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEec-ccccccc
Q 003094 525 MEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLD-MSEFMER 603 (848)
Q Consensus 525 l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~-~~~~~~~ 603 (848)
+.+.-.+++.-+..-++.|...++....+. .+...+||+||+|||||++++.||+.+ +..+.... ...+...
T Consensus 13 y~P~~~~eLavhkkKv~eV~~wl~~~~~~~----~~~~iLlLtGP~G~GKtttv~~La~el---g~~v~Ew~np~~~~~~ 85 (519)
T PF03215_consen 13 YAPKTLDELAVHKKKVEEVRSWLEEMFSGS----SPKRILLLTGPSGCGKTTTVKVLAKEL---GFEVQEWINPVSFRES 85 (519)
T ss_pred cCCCCHHHhhccHHHHHHHHHHHHHHhccC----CCcceEEEECCCCCCHHHHHHHHHHHh---CCeeEEecCCCCcccc
Confidence 334444556667777788888887654332 222358899999999999999999997 22222211 1110000
Q ss_pred c-chhcccCCC---CCCcccccccchhHH-H--------------HcCCCeEEEEcCCCcCC----hHHHHHHHhhhcCc
Q 003094 604 H-TVSKLIGSP---PGYVGYTEGGQLTEA-V--------------RRRPYTVVLFDEIEKAH----PDVFNMMLQILEDG 660 (848)
Q Consensus 604 ~-~~~~l~g~~---~g~~g~~~~~~l~~~-~--------------~~~~~~Vl~lDEid~l~----~~~~~~Ll~~le~g 660 (848)
. ......+.. ..|... ...+.++ + ......||++||+-... ..+.+.|.+++..+
T Consensus 86 ~~~~~d~~s~~~~~~~f~sq--~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~~~~f~~~L~~~l~~~ 163 (519)
T PF03215_consen 86 DNQEDDFESDFNKFDEFLSQ--SDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRDTSRFREALRQYLRSS 163 (519)
T ss_pred ccccccccccccccccccch--hhhhccccccccccccccccCCCcCCCceEEEeeccccccchhHHHHHHHHHHHHHcC
Confidence 0 000000000 000000 0011111 0 01235699999988653 34666777777653
Q ss_pred EEEcCCCceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccC-eEEEcCC
Q 003094 661 RLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLD-EMIVFRQ 739 (848)
Q Consensus 661 ~~~~~~g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d-~~i~f~~ 739 (848)
.. .-+|||+| ...... . +....... -.....|++++++... ..|.|.|
T Consensus 164 ~~----------~PlV~iiS-e~~~~~--~---------~~~~~~~~---------~t~~~L~~~~il~~~~i~~I~FNp 212 (519)
T PF03215_consen 164 RC----------LPLVFIIS-ETESLS--G---------DNSYRSNS---------FTAERLFPKEILNHPGITRIKFNP 212 (519)
T ss_pred CC----------CCEEEEEe-cccccC--C---------CCcccccc---------hhhhhccCHHHHhCCCceEEEecC
Confidence 31 02355555 110000 0 00000000 0122357888886542 5799999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHHHHHH
Q 003094 740 LTKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLE 800 (848)
Q Consensus 740 l~~~el~~I~~~~l~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~l~ 800 (848)
.++.-|.+.+.+++.......... ....-..++++.|+. ...+++|.+|..+=.
T Consensus 213 Ia~T~mkKaL~rI~~~E~~~~~~~-~~~p~~~~~l~~I~~------~s~GDIRsAIn~LQf 266 (519)
T PF03215_consen 213 IAPTFMKKALKRILKKEARSSSGK-NKVPDKQSVLDSIAE------SSNGDIRSAINNLQF 266 (519)
T ss_pred CCHHHHHHHHHHHHHHHhhhhcCC-ccCCChHHHHHHHHH------hcCchHHHHHHHHHH
Confidence 999999999988887643332111 111112456888887 345789888875443
No 451
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.46 E-value=1.8e-06 Score=99.98 Aligned_cols=183 Identities=22% Similarity=0.317 Sum_probs=108.7
Q ss_pred CCccCChHHHHHHHHHhcc--CCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccccc------
Q 003094 197 DPVVGRQPQIERVVQILGR--RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGT------ 268 (848)
Q Consensus 197 d~iiG~~~~~~~l~~~l~~--~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~------ 268 (848)
..++|....+.++.+.+.. ....++++.|++||||+++|+++...... .+.+++.++|..+....
T Consensus 134 ~~lig~s~~~~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~-------~~~~~~~~~c~~~~~~~~~~~lf 206 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHSPR-------ANGPFIALNMAAIPKDLIESELF 206 (463)
T ss_pred cceeecCHHHHHHHHHHHHHhCcCCeEEEECCCCCCHHHHHHHHHHhCCC-------CCCCeEEEeCCCCCHHHHHHHhc
Confidence 3477877777776665533 44567899999999999999999886532 25678999988763100
Q ss_pred -cccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCC-------------ceEEEEeeCh
Q 003094 269 -KYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARG-------------ELQCIGATTL 334 (848)
Q Consensus 269 -~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~-------------~v~vI~atn~ 334 (848)
...|.+...............+..|||||++.|. .+.+..|..+++.+ .+.+|++|+.
T Consensus 207 g~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l~--------~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~ 278 (463)
T TIGR01818 207 GHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDMP--------LDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQ 278 (463)
T ss_pred CCCCCCCCCcccCCCCcEEECCCCeEEEEchhhCC--------HHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCC
Confidence 0000000000000011223346689999999994 44677777776543 3578888875
Q ss_pred HHH--HhhhhcChhhhcccC--CCcCCCCC--HHHHHHHHHHHHHHHhhhhc---CCCChHHHHHHHhh
Q 003094 335 DEY--RKHIEKDPALERRFQ--PVKVPEPS--VDETIQILKGLRERYEIHHK---LRYTDEALVSAAQL 394 (848)
Q Consensus 335 ~~~--~~~~~~d~al~~Rf~--~i~~~~p~--~~e~~~Il~~~~~~~~~~~~---~~~s~~~l~~l~~~ 394 (848)
.-. ...-...+.|..|+. .|.+|+.. .++...++..++.++....+ ..++++++..+..+
T Consensus 279 ~l~~~~~~~~f~~~L~~rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~ 347 (463)
T TIGR01818 279 NLEALVRQGKFREDLFHRLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQL 347 (463)
T ss_pred CHHHHHHcCCcHHHHHHHhCcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhC
Confidence 431 111123456777886 45555544 45565666666665543332 35677777766653
No 452
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.44 E-value=7e-07 Score=84.00 Aligned_cols=109 Identities=20% Similarity=0.280 Sum_probs=70.1
Q ss_pred CCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccc--------------cccccchHHHHHHHHH
Q 003094 217 TKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVA--------------GTKYRGEFEERLKKLM 282 (848)
Q Consensus 217 ~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~--------------~~~~~g~~~~~l~~l~ 282 (848)
....++++||||+|||++++.+++.+........ ..+++++++..... ..............+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~ 80 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKN--HPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLI 80 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCC--CEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccC--CCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHH
Confidence 4567889999999999999999998753100000 35677777643321 1111123344445555
Q ss_pred HHHHhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCCceEEEEeeCh
Q 003094 283 EEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATTL 334 (848)
Q Consensus 283 ~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~atn~ 334 (848)
+.+......+|+|||+|.+. .....+.|+.+.+...+.+|.++++
T Consensus 81 ~~l~~~~~~~lviDe~~~l~-------~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 81 DALDRRRVVLLVIDEADHLF-------SDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHCTEEEEEEETTHHHH-------THHHHHHHHHHTCSCBEEEEEEESS
T ss_pred HHHHhcCCeEEEEeChHhcC-------CHHHHHHHHHHHhCCCCeEEEEECh
Confidence 55666656799999999985 1567888888888888888888876
No 453
>PRK08181 transposase; Validated
Probab=98.42 E-value=3.9e-07 Score=96.02 Aligned_cols=105 Identities=17% Similarity=0.250 Sum_probs=62.7
Q ss_pred CCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccccccccchHHHHHHHHHHHHHhCCCeEEEEc
Q 003094 217 TKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFID 296 (848)
Q Consensus 217 ~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~IL~ID 296 (848)
...|++|+||||||||+++.++++.+... +..+++++...+....+. ..........++.+.+.. +|+||
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~-------g~~v~f~~~~~L~~~l~~-a~~~~~~~~~l~~l~~~d--LLIID 174 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIEN-------GWRVLFTRTTDLVQKLQV-ARRELQLESAIAKLDKFD--LLILD 174 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHc-------CCceeeeeHHHHHHHHHH-HHhCCcHHHHHHHHhcCC--EEEEe
Confidence 56789999999999999999999987542 566777776655431110 000112333445544444 99999
Q ss_pred ccchhhhCCCCCchHHHHHHHhhhhcCCceEEEEeeChH
Q 003094 297 EVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATTLD 335 (848)
Q Consensus 297 Eid~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~atn~~ 335 (848)
|++.+... ......+.+++....++. .+|.|||.+
T Consensus 175 Dlg~~~~~--~~~~~~Lf~lin~R~~~~--s~IiTSN~~ 209 (269)
T PRK08181 175 DLAYVTKD--QAETSVLFELISARYERR--SILITANQP 209 (269)
T ss_pred ccccccCC--HHHHHHHHHHHHHHHhCC--CEEEEcCCC
Confidence 99986432 111223444444444443 456666543
No 454
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=98.41 E-value=1.9e-06 Score=89.98 Aligned_cols=160 Identities=22% Similarity=0.359 Sum_probs=104.1
Q ss_pred CCccCChHHHHHHHHHhcc----CCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccc------
Q 003094 197 DPVVGRQPQIERVVQILGR----RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVA------ 266 (848)
Q Consensus 197 d~iiG~~~~~~~l~~~l~~----~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~------ 266 (848)
-++.|..++-+.+.+++.+ +..+.++++||.|+|||++..........- +-.++.+.+.....
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~-------~E~~l~v~Lng~~~~dk~al 96 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQEN-------GENFLLVRLNGELQTDKIAL 96 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhc-------CCeEEEEEECccchhhHHHH
Confidence 3467777766666666553 678899999999999999776555442210 22333333322111
Q ss_pred -------------cccccchHHHHHHHHHHHHHh-----CCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhc-----C
Q 003094 267 -------------GTKYRGEFEERLKKLMEEIKQ-----SDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLA-----R 323 (848)
Q Consensus 267 -------------~~~~~g~~~~~l~~l~~~~~~-----~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~-----~ 323 (848)
+.+..|.+.+++..++..++. ..++|+++||+|.+++- .-+..|..+++ +
T Consensus 97 ~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h-------~rQtllYnlfDisqs~r 169 (408)
T KOG2228|consen 97 KGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPH-------SRQTLLYNLFDISQSAR 169 (408)
T ss_pred HHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccc-------hhhHHHHHHHHHHhhcC
Confidence 234456667777777777764 33578888999998743 23445555543 5
Q ss_pred CceEEEEeeChHHHHhhhhcChhhhcccC--CCcC-CCCCHHHHHHHHHHHH
Q 003094 324 GELQCIGATTLDEYRKHIEKDPALERRFQ--PVKV-PEPSVDETIQILKGLR 372 (848)
Q Consensus 324 ~~v~vI~atn~~~~~~~~~~d~al~~Rf~--~i~~-~~p~~~e~~~Il~~~~ 372 (848)
..+.+||.|+.-+....+ ...+.+||. .|.+ |..+.++..++++.++
T Consensus 170 ~Piciig~Ttrld~lE~L--EKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 170 APICIIGVTTRLDILELL--EKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred CCeEEEEeeccccHHHHH--HHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 679999999887765543 578999995 3444 4456777777777665
No 455
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.40 E-value=5.2e-07 Score=97.97 Aligned_cols=106 Identities=15% Similarity=0.279 Sum_probs=68.2
Q ss_pred eEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhcccCCCCCCcccccccchhHHHHcCCCeEEEEcC
Q 003094 562 ASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDE 641 (848)
Q Consensus 562 ~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDE 641 (848)
.+++|+||+|||||+||.+||+.+...+..++.+...++........+ . ...+.....+.+..+. +|+||+
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~-~------~~~~~~~~~~~l~~~D--LLIIDD 254 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRF-N------NDKELEEVYDLLINCD--LLIIDD 254 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHh-c------cchhHHHHHHHhccCC--EEEEec
Confidence 359999999999999999999998777777777777766432111100 0 0001111134444444 999999
Q ss_pred CCcC--ChHHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCch
Q 003094 642 IEKA--HPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSS 686 (848)
Q Consensus 642 id~l--~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~ 686 (848)
+... ++..++.|..+++.... .+.-+|+|||....
T Consensus 255 lG~e~~t~~~~~~Lf~iin~R~~----------~~k~tIiTSNl~~~ 291 (329)
T PRK06835 255 LGTEKITEFSKSELFNLINKRLL----------RQKKMIISTNLSLE 291 (329)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHH----------CCCCEEEECCCCHH
Confidence 9654 56777888888875321 11247889986554
No 456
>PRK15115 response regulator GlrR; Provisional
Probab=98.40 E-value=4.6e-06 Score=95.93 Aligned_cols=173 Identities=20% Similarity=0.274 Sum_probs=105.6
Q ss_pred CccCChHHHHHHHHHhc--cCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccccccccchHH
Q 003094 198 PVVGRQPQIERVVQILG--RRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFE 275 (848)
Q Consensus 198 ~iiG~~~~~~~l~~~l~--~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~~~~g~~~ 275 (848)
.++|....+.++.+... .....+++|+|++|||||++|+.+.+.... .+.+++.++|..+... ..
T Consensus 135 ~lig~s~~~~~~~~~~~~~a~~~~~vli~Ge~GtGk~~lA~~ih~~s~r-------~~~~f~~i~c~~~~~~-----~~- 201 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNASPR-------ASKPFIAINCGALPEQ-----LL- 201 (444)
T ss_pred cccccCHHHHHHHHHHHhhccCCCeEEEEcCCcchHHHHHHHHHHhcCC-------CCCCeEEEeCCCCCHH-----HH-
Confidence 36777777766655432 245567899999999999999999886532 2467999998876311 00
Q ss_pred HHHHHHHHH---------------HHhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCC-------------ceE
Q 003094 276 ERLKKLMEE---------------IKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARG-------------ELQ 327 (848)
Q Consensus 276 ~~l~~l~~~---------------~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~-------------~v~ 327 (848)
-..+|.. .....+.+|||||+|.|. .+.+..|..+++.+ .+.
T Consensus 202 --~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~--------~~~q~~L~~~l~~~~~~~~g~~~~~~~~~r 271 (444)
T PRK15115 202 --ESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMP--------APLQVKLLRVLQERKVRPLGSNRDIDIDVR 271 (444)
T ss_pred --HHHhcCCCcCCCCCCccCCCCcEEECCCCEEEEEccccCC--------HHHHHHHHHHHhhCCEEeCCCCceeeeeEE
Confidence 1112211 112345699999999994 44677777777543 358
Q ss_pred EEEeeChHHHH--hhhhcChhhhcccCCCcCCCCCHHHHHH----HHHHHHHHHhhhhc---CCCChHHHHHHHh
Q 003094 328 CIGATTLDEYR--KHIEKDPALERRFQPVKVPEPSVDETIQ----ILKGLRERYEIHHK---LRYTDEALVSAAQ 393 (848)
Q Consensus 328 vI~atn~~~~~--~~~~~d~al~~Rf~~i~~~~p~~~e~~~----Il~~~~~~~~~~~~---~~~s~~~l~~l~~ 393 (848)
+|++|+.+-.. ..-...+.+..|+..+.+..|+..+|.+ +++.++.++...++ ..++++++..+..
T Consensus 272 ii~~~~~~l~~~~~~~~f~~~l~~~l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~ 346 (444)
T PRK15115 272 IISATHRDLPKAMARGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMT 346 (444)
T ss_pred EEEeCCCCHHHHHHcCCccHHHHHhhceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHh
Confidence 88888754211 1112345666677767777777776654 33444444332222 2367777666654
No 457
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.40 E-value=4.1e-06 Score=88.85 Aligned_cols=145 Identities=18% Similarity=0.223 Sum_probs=99.7
Q ss_pred ChHHHHHHHHHhccCCCCCc-EEECCCCCcHHHHHHHHHHHhhCCCCCC--------------CCCCceEEEEeCCcccc
Q 003094 202 RQPQIERVVQILGRRTKNNP-CLIGEPGVGKTAIAEGLAQRIASGDVPD--------------TIEGKKVITLDMGLLVA 266 (848)
Q Consensus 202 ~~~~~~~l~~~l~~~~~~~i-LL~GppGtGKT~la~~la~~l~~~~~~~--------------~l~~~~v~~~~~~~l~~ 266 (848)
+...++.+...+......|. ||+|| +||+++|+.+|+.+.+....+ .....+++.+....
T Consensus 7 q~~~~~~L~~~~~~~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~--- 81 (290)
T PRK07276 7 QPKVFQRFQTILEQDRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQG--- 81 (290)
T ss_pred HHHHHHHHHHHHHcCCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCC---
Confidence 55677788888887776665 78896 689999999999998754211 11234455444321
Q ss_pred cccccchHHHHHHHHHHHHH----hCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcC--CceEEEEeeChHHHHhh
Q 003094 267 GTKYRGEFEERLKKLMEEIK----QSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR--GELQCIGATTLDEYRKH 340 (848)
Q Consensus 267 ~~~~~g~~~~~l~~l~~~~~----~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~atn~~~~~~~ 340 (848)
.. -..+.++.+.+.+. .++..|++||++|.|. ....|.|++.+|. .+.++|.+|+.++
T Consensus 82 -~~---I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m~--------~~AaNaLLKtLEEPp~~t~~iL~t~~~~---- 145 (290)
T PRK07276 82 -QV---IKTDTIRELVKNFSQSGYEGKQQVFIIKDADKMH--------VNAANSLLKVIEEPQSEIYIFLLTNDEN---- 145 (290)
T ss_pred -Cc---CCHHHHHHHHHHHhhCcccCCcEEEEeehhhhcC--------HHHHHHHHHHhcCCCCCeEEEEEECChh----
Confidence 10 11244555555543 2445799999999994 4589999999983 4477788787776
Q ss_pred hhcChhhhcccCCCcCCCCCHHHHHHHHH
Q 003094 341 IEKDPALERRFQPVKVPEPSVDETIQILK 369 (848)
Q Consensus 341 ~~~d~al~~Rf~~i~~~~p~~~e~~~Il~ 369 (848)
.+-|.++|||+.|.|+. +.++..+++.
T Consensus 146 -~lLpTI~SRcq~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 146 -KVLPTIKSRTQIFHFPK-NEAYLIQLLE 172 (290)
T ss_pred -hCchHHHHcceeeeCCC-cHHHHHHHHH
Confidence 68999999999999976 5665555554
No 458
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=1.3e-06 Score=103.73 Aligned_cols=123 Identities=24% Similarity=0.371 Sum_probs=94.2
Q ss_pred CCccCChHHHHHHHHHhccC--------CCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccc--
Q 003094 197 DPVVGRQPQIERVVQILGRR--------TKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVA-- 266 (848)
Q Consensus 197 d~iiG~~~~~~~l~~~l~~~--------~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~-- 266 (848)
+.++||++.+..|.+.+... +...++|.||.|+|||-+|+++|..+... ...++.+|++.+..
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgs-------e~~~IriDmse~~evs 634 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGS-------EENFIRLDMSEFQEVS 634 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCC-------ccceEEechhhhhhhh
Confidence 35899999999998887541 23446899999999999999999999653 45688999986332
Q ss_pred -----cccccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCCc-------------eEE
Q 003094 267 -----GTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGE-------------LQC 328 (848)
Q Consensus 267 -----~~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~~-------------v~v 328 (848)
...|+|.. ....+.+.++....+|++||||+.. +.++.+.|++++++|+ .+|
T Consensus 635 kligsp~gyvG~e--~gg~LteavrrrP~sVVLfdeIEkA--------h~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~ 704 (898)
T KOG1051|consen 635 KLIGSPPGYVGKE--EGGQLTEAVKRRPYSVVLFEEIEKA--------HPDVLNILLQLLDRGRLTDSHGREVDFKNAIF 704 (898)
T ss_pred hccCCCcccccch--hHHHHHHHHhcCCceEEEEechhhc--------CHHHHHHHHHHHhcCccccCCCcEeeccceEE
Confidence 12245533 3557788888888999999999986 5668999999998543 688
Q ss_pred EEeeChHH
Q 003094 329 IGATTLDE 336 (848)
Q Consensus 329 I~atn~~~ 336 (848)
|+|.|...
T Consensus 705 IMTsn~~~ 712 (898)
T KOG1051|consen 705 IMTSNVGS 712 (898)
T ss_pred EEecccch
Confidence 88887643
No 459
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.38 E-value=9.3e-06 Score=86.94 Aligned_cols=146 Identities=13% Similarity=0.076 Sum_probs=99.2
Q ss_pred HHHHHHHHHhccCCCCCc-EEECCCCCcHHHHHHHHHHHhhCCCC---CCCCCCceEEEEeCCcccccccccchHHHHHH
Q 003094 204 PQIERVVQILGRRTKNNP-CLIGEPGVGKTAIAEGLAQRIASGDV---PDTIEGKKVITLDMGLLVAGTKYRGEFEERLK 279 (848)
Q Consensus 204 ~~~~~l~~~l~~~~~~~i-LL~GppGtGKT~la~~la~~l~~~~~---~~~l~~~~v~~~~~~~l~~~~~~~g~~~~~l~ 279 (848)
..++.+...+..+...|+ ||+|+.|.||+.+++.+++.+.+... ...-....+..++... .. -....++
T Consensus 3 ~~~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g----~~---i~vd~Ir 75 (299)
T PRK07132 3 NWIKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFD----KD---LSKSEFL 75 (299)
T ss_pred hHHHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCC----Cc---CCHHHHH
Confidence 456777778877777776 58999999999999999999855321 1000011233333111 10 0113444
Q ss_pred HHHHHHH-----hCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhc--CCceEEEEeeChHHHHhhhhcChhhhcccC
Q 003094 280 KLMEEIK-----QSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLA--RGELQCIGATTLDEYRKHIEKDPALERRFQ 352 (848)
Q Consensus 280 ~l~~~~~-----~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~--~~~v~vI~atn~~~~~~~~~~d~al~~Rf~ 352 (848)
.+.+.+. .++..|++||+++.+. ....+.|+..++ ...+.+|.+|+.++ .+-|.+.+|++
T Consensus 76 ~l~~~~~~~~~~~~~~KvvII~~~e~m~--------~~a~NaLLK~LEEPp~~t~~il~~~~~~-----kll~TI~SRc~ 142 (299)
T PRK07132 76 SAINKLYFSSFVQSQKKILIIKNIEKTS--------NSLLNALLKTIEEPPKDTYFLLTTKNIN-----KVLPTIVSRCQ 142 (299)
T ss_pred HHHHHhccCCcccCCceEEEEecccccC--------HHHHHHHHHHhhCCCCCeEEEEEeCChH-----hChHHHHhCeE
Confidence 5555442 1466799999999883 447889999998 44567777676554 67889999999
Q ss_pred CCcCCCCCHHHHHHHHH
Q 003094 353 PVKVPEPSVDETIQILK 369 (848)
Q Consensus 353 ~i~~~~p~~~e~~~Il~ 369 (848)
.++|.+++.++..+.+.
T Consensus 143 ~~~f~~l~~~~l~~~l~ 159 (299)
T PRK07132 143 VFNVKEPDQQKILAKLL 159 (299)
T ss_pred EEECCCCCHHHHHHHHH
Confidence 99999999998876665
No 460
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.37 E-value=1e-06 Score=92.44 Aligned_cols=103 Identities=29% Similarity=0.398 Sum_probs=66.8
Q ss_pred CCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccccccc---cchHHHHHHHHHHHHHhCCCeEE
Q 003094 217 TKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKY---RGEFEERLKKLMEEIKQSDEIIL 293 (848)
Q Consensus 217 ~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~~~---~g~~~~~l~~l~~~~~~~~~~IL 293 (848)
...|++|+||||||||+++-+|++++.. .|.+++++...++...-+. .|..+. .+...+.+.+ +|
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~-------~g~sv~f~~~~el~~~Lk~~~~~~~~~~---~l~~~l~~~d--lL 171 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLK-------AGISVLFITAPDLLSKLKAAFDEGRLEE---KLLRELKKVD--LL 171 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHH-------cCCeEEEEEHHHHHHHHHHHHhcCchHH---HHHHHhhcCC--EE
Confidence 7899999999999999999999999973 2678999988776642110 012222 2333355555 99
Q ss_pred EEcccchhhhCCCCCchHHHHHHHhhhhcCCceEEEEeeChH
Q 003094 294 FIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATTLD 335 (848)
Q Consensus 294 ~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~atn~~ 335 (848)
+|||+...... ......+..++....++... |.|+|.+
T Consensus 172 IiDDlG~~~~~--~~~~~~~~q~I~~r~~~~~~--~~tsN~~ 209 (254)
T COG1484 172 IIDDIGYEPFS--QEEADLLFQLISRRYESRSL--IITSNLS 209 (254)
T ss_pred EEecccCccCC--HHHHHHHHHHHHHHHhhccc--eeecCCC
Confidence 99999886321 11223344455555566555 6666543
No 461
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.37 E-value=3.2e-07 Score=91.10 Aligned_cols=102 Identities=21% Similarity=0.338 Sum_probs=66.8
Q ss_pred EEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhcccCCCCCCcccccccchhHHHHcCCCeEEEEcCC
Q 003094 563 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEI 642 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEi 642 (848)
+++|+||||||||.+|.++++.+...+.+...++..++.+.-... + .......+...+.+.+ +|+|||+
T Consensus 49 ~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~--------~-~~~~~~~~~~~l~~~d--lLilDDl 117 (178)
T PF01695_consen 49 NLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQS--------R-SDGSYEELLKRLKRVD--LLILDDL 117 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCC--------H-CCTTHCHHHHHHHTSS--CEEEETC
T ss_pred EEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceecccccc--------c-cccchhhhcCcccccc--Eeccccc
Confidence 599999999999999999999887777778888887775442211 1 0111133455555554 9999999
Q ss_pred CcCC--hHHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCch
Q 003094 643 EKAH--PDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSS 686 (848)
Q Consensus 643 d~l~--~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~ 686 (848)
...+ +...+.|.++++... .+--.|+|||....
T Consensus 118 G~~~~~~~~~~~l~~ii~~R~-----------~~~~tIiTSN~~~~ 152 (178)
T PF01695_consen 118 GYEPLSEWEAELLFEIIDERY-----------ERKPTIITSNLSPS 152 (178)
T ss_dssp TSS---HHHHHCTHHHHHHHH-----------HT-EEEEEESS-HH
T ss_pred ceeeecccccccchhhhhHhh-----------cccCeEeeCCCchh
Confidence 8664 557777788876522 11236679997654
No 462
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.37 E-value=7e-06 Score=90.93 Aligned_cols=175 Identities=15% Similarity=0.179 Sum_probs=100.5
Q ss_pred hhhhhhhhcCCCCCccCChHHHHHHHHHhc-----cCCC-CCc-EEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEE
Q 003094 185 TNLTKLAEEGKLDPVVGRQPQIERVVQILG-----RRTK-NNP-CLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVI 257 (848)
Q Consensus 185 ~~l~~~~~~~~ld~iiG~~~~~~~l~~~l~-----~~~~-~~i-LL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~ 257 (848)
..|.+++.|.+++++--+.+-+.+|.++|. .+.. .++ ||+||+||||||+++.|+++++ ..+.
T Consensus 70 elW~eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskelg----------~~~~ 139 (634)
T KOG1970|consen 70 ELWVEKYKPRTLEELAVHKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKELG----------YQLI 139 (634)
T ss_pred chhHHhcCcccHHHHhhhHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhhC----------ceee
Confidence 459999999999999888888888888877 3333 334 6789999999999999999984 3444
Q ss_pred EEe-------CCcccccc-----cccchHHHHHHHHHHHHH------------hCCCeEEEEcccchhhhCCCCCchHHH
Q 003094 258 TLD-------MGLLVAGT-----KYRGEFEERLKKLMEEIK------------QSDEIILFIDEVHTLIGAGAAEGAIDA 313 (848)
Q Consensus 258 ~~~-------~~~l~~~~-----~~~g~~~~~l~~l~~~~~------------~~~~~IL~IDEid~l~~~~~~~~~~~~ 313 (848)
+.. ...+...+ .+..+ -..+......+. ...+.+|+|||+-..+... ....+
T Consensus 140 Ew~Npi~~~~~~~~h~~t~~~~~~~~s~-L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d---~~~~f 215 (634)
T KOG1970|consen 140 EWSNPINLKEPENLHNETSFLMFPYQSQ-LAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRD---DSETF 215 (634)
T ss_pred eecCCccccccccccccchhcccchhhH-HHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhhh---hHHHH
Confidence 332 11111111 11111 111222222221 1346689999998876442 23345
Q ss_pred HHHHhhhhcCCceEEE-EeeCh------HHHHhhhhcChhhhcccCCCcCCCCCHHHHHHHHHHHHHH
Q 003094 314 ANILKPSLARGELQCI-GATTL------DEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRER 374 (848)
Q Consensus 314 ~~~L~~~l~~~~v~vI-~atn~------~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~Il~~~~~~ 374 (848)
.+.|..+...+.+.+| ..|.. ..++. +..|-...-|...|.|.+-...-....|..++..
T Consensus 216 ~evL~~y~s~g~~PlIf~iTd~~~~g~nnq~rl-f~~d~q~~~ri~~IsFNPIa~T~MKK~L~ric~~ 282 (634)
T KOG1970|consen 216 REVLRLYVSIGRCPLIFIITDSLSNGNNNQDRL-FPKDIQEEPRISNISFNPIAPTIMKKFLKRICRI 282 (634)
T ss_pred HHHHHHHHhcCCCcEEEEEeccccCCCcchhhh-chhhhhhccCcceEeecCCcHHHHHHHHHHHHHH
Confidence 5666655554443222 22222 11111 1112222235567889888887666666666653
No 463
>PRK06526 transposase; Provisional
Probab=98.35 E-value=3.7e-07 Score=95.74 Aligned_cols=101 Identities=23% Similarity=0.422 Sum_probs=64.7
Q ss_pred EEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhcccCCCCCCcccccccchhHHHHc-CCCeEEEEcC
Q 003094 563 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRR-RPYTVVLFDE 641 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~-~~~~Vl~lDE 641 (848)
+++|+||||||||++|.+|+..+...+.......+.++........ ..+.+...+.. ....+|+|||
T Consensus 100 nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~------------~~~~~~~~l~~l~~~dlLIIDD 167 (254)
T PRK06526 100 NVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAH------------HAGRLQAELVKLGRYPLLIVDE 167 (254)
T ss_pred eEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHH------------hcCcHHHHHHHhccCCEEEEcc
Confidence 5999999999999999999988755555555555555433221110 00122222222 3356999999
Q ss_pred CCcCC--hHHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCch
Q 003094 642 IEKAH--PDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSS 686 (848)
Q Consensus 642 id~l~--~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~ 686 (848)
++..+ +..++.|.++++... .+.-+|+|||.+..
T Consensus 168 ~g~~~~~~~~~~~L~~li~~r~-----------~~~s~IitSn~~~~ 203 (254)
T PRK06526 168 VGYIPFEPEAANLFFQLVSSRY-----------ERASLIVTSNKPFG 203 (254)
T ss_pred cccCCCCHHHHHHHHHHHHHHH-----------hcCCEEEEcCCCHH
Confidence 99874 677788888886522 12247889986554
No 464
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=98.35 E-value=1.8e-05 Score=88.92 Aligned_cols=256 Identities=18% Similarity=0.214 Sum_probs=148.9
Q ss_pred HHHHHHHhhccccChHHHHHHHHHHHHHHH--c-cCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEeccc
Q 003094 522 LLKMEETLHKRVIGQDEAVKAISRAIRRAR--V-GLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMS 598 (848)
Q Consensus 522 l~~l~~~l~~~vigq~~~~~~l~~~~~~~~--~-~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~ 598 (848)
+.+|-.-++-.|.|++.++..|.-.+--.- . +-..|-+.-.+++++|.||+||+.+-++.+..+- ..-.++-+.+
T Consensus 336 y~~lv~Sl~PsIyGhe~VK~GilL~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsP--R~vYtsGkaS 413 (764)
T KOG0480|consen 336 YKNLVNSLFPSIYGHELVKAGILLSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSP--RSVYTSGKAS 413 (764)
T ss_pred HHHHHHhhCccccchHHHHhhHHHHHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCC--cceEecCccc
Confidence 456667788899999998877765542110 0 1011122335799999999999999999998762 1222222221
Q ss_pred ccccccchhcccCCCCCCcccccccch---hHHHHcCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecCCe
Q 003094 599 EFMERHTVSKLIGSPPGYVGYTEGGQL---TEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNT 675 (848)
Q Consensus 599 ~~~~~~~~~~l~g~~~g~~g~~~~~~l---~~~~~~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~ 675 (848)
.-.+ -+++ -+-..+.+.+ .+++--+.+||-.|||+||++..-|.+|..+||...++.. ++
T Consensus 414 SaAG-LTaa--------VvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~~dqvAihEAMEQQtISIa--------KA 476 (764)
T KOG0480|consen 414 SAAG-LTAA--------VVKDEESGDFTIEAGALMLADNGICCIDEFDKMDVKDQVAIHEAMEQQTISIA--------KA 476 (764)
T ss_pred cccc-ceEE--------EEecCCCCceeeecCcEEEccCceEEechhcccChHhHHHHHHHHHhheehhe--------ec
Confidence 1100 0000 0111111111 1334446789999999999999899999999999776644 44
Q ss_pred EEEEecCCCchhhhccCcccc-cccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeE-EEcCCCCHHHHHHHHHHHH
Q 003094 676 LLIMTSNVGSSVIEKGGRRIG-FDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEM-IVFRQLTKLEVKEIADIML 753 (848)
Q Consensus 676 iiI~tsN~~~~~i~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~-i~f~~l~~~el~~I~~~~l 753 (848)
=+++|-|...+++......-| |+ .. + .+.+++ .+.+++++|||-+ |.+...++..=..|..+++
T Consensus 477 Gv~aTLnARtSIlAAANPv~GhYd--R~---------k-tl~eNi--~msApimSRFDL~FiLlD~~nE~~D~~ia~hIl 542 (764)
T KOG0480|consen 477 GVVATLNARTSILAAANPVGGHYD--RK---------K-TLRENI--NMSAPIMSRFDLFFILLDDCNEVVDYAIARHIL 542 (764)
T ss_pred ceEEeecchhhhhhhcCCcCCccc--cc---------c-chhhhc--CCCchhhhhhcEEEEEecCCchHHHHHHHHHHH
Confidence 466666665555544322222 21 00 0 011111 2789999999986 6667777765566666665
Q ss_pred HHHH-----------------HHHh--cCCCeEeecHHHHHHHHHc----------c---CCCCCCchHHHHHHHHHHHH
Q 003094 754 KEVF-----------------DRLK--TKDIELQVTERFRERVVEE----------G---YNPSYGARPLRRAIMRLLED 801 (848)
Q Consensus 754 ~~~~-----------------~~~~--~~~~~l~i~~~a~~~l~~~----------~---~~~~~g~r~L~~~i~~~l~~ 801 (848)
+... .++- .+.....++.++-+.|.++ + -.|+.-.|+|+..|+ +..
T Consensus 543 d~h~~i~~~~~~~~~~~~e~vrkYi~yAR~~~P~ls~ea~~~lve~Y~~lR~~~~~~~~~~s~~ITvRqLESlIR--LsE 620 (764)
T KOG0480|consen 543 DLHRGIDDATERVCVYTLEQVRKYIRYARNFKPKLSKEASEMLVEKYKGLRQRDAQGNNRSSYRITVRQLESLIR--LSE 620 (764)
T ss_pred HHhccccccccccccccHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHhhccccCcccccccHHHHHHHHH--HHH
Confidence 4311 0110 0133445677777777653 1 145677899988887 667
Q ss_pred HHHHHHHcccc
Q 003094 802 SMAEKMLAREI 812 (848)
Q Consensus 802 ~l~~~~l~~~~ 812 (848)
++++.=+..++
T Consensus 621 A~Ar~~~~dev 631 (764)
T KOG0480|consen 621 ARARVECRDEV 631 (764)
T ss_pred HHHhhhhhhhc
Confidence 77776554433
No 465
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.35 E-value=5.7e-06 Score=96.41 Aligned_cols=179 Identities=15% Similarity=0.125 Sum_probs=115.0
Q ss_pred CCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCC----cccccccccchHHHHHHHH-----HHHHHh
Q 003094 217 TKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMG----LLVAGTKYRGEFEERLKKL-----MEEIKQ 287 (848)
Q Consensus 217 ~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~----~l~~~~~~~g~~~~~l~~l-----~~~~~~ 287 (848)
...+++|.|++|+||+++++.++..+.. ..++..+..+ .+..| ++.+..++.= -..+..
T Consensus 24 ~~gGv~i~g~~G~~ks~~~r~l~~llp~--------~~p~r~~p~~~t~~~L~Gg----~Dl~~~l~~g~~~~~pGlla~ 91 (584)
T PRK13406 24 GLGGVVLRARAGPVRDRWLAALRALLPA--------GTPLRRLPPGIADDRLLGG----LDLAATLRAGRPVAQRGLLAE 91 (584)
T ss_pred ccceEEEEcCCCcHHHHHHHHHHHhcCC--------CCCcccCCCCCcHHHccCC----chHHhHhhcCCcCCCCCceee
Confidence 5578999999999999999999998853 1334433322 22222 1222222110 011223
Q ss_pred CCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCC---------------ceEEEEeeChHHHHhhhhcChhhhcccC
Q 003094 288 SDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARG---------------ELQCIGATTLDEYRKHIEKDPALERRFQ 352 (848)
Q Consensus 288 ~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~---------------~v~vI~atn~~~~~~~~~~d~al~~Rf~ 352 (848)
..+.||||||++.+- ..+++.|+..++.+ .+++|++.+..+|. ..+.++++.||.
T Consensus 92 Ah~GvL~lDe~n~~~--------~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~--~~L~~~lLDRf~ 161 (584)
T PRK13406 92 ADGGVLVLAMAERLE--------PGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEED--ERAPAALADRLA 161 (584)
T ss_pred ccCCEEEecCcccCC--------HHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcc--cCCCHHhHhheE
Confidence 446799999999984 45899999999865 36778875554443 368999999997
Q ss_pred -CCcCCCCCHHHHH-------HHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCChhhHHHHHHHHhhHHHHhh
Q 003094 353 -PVKVPEPSVDETI-------QILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRH 423 (848)
Q Consensus 353 -~i~~~~p~~~e~~-------~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~p~~a~~ll~~a~~~~~~~~ 423 (848)
.|.++.|+..+.. +|.. ..+++ .++.++++.+.+++.++..+-- ..++..+.+++-|...+.+..
T Consensus 162 l~v~v~~~~~~~~~~~~~~~~~I~~-AR~rl---~~v~v~~~~l~~i~~~~~~~gv--~S~Ra~i~llraARa~AaL~G 234 (584)
T PRK13406 162 FHLDLDGLALRDAREIPIDADDIAA-ARARL---PAVGPPPEAIAALCAAAAALGI--ASLRAPLLALRAARAAAALAG 234 (584)
T ss_pred EEEEcCCCChHHhcccCCCHHHHHH-HHHHH---ccCCCCHHHHHHHHHHHHHhCC--CCcCHHHHHHHHHHHHHHHcC
Confidence 8888888766432 1222 22222 4678888888888876665421 134566777777777766654
No 466
>KOG1808 consensus AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.33 E-value=1.4e-05 Score=100.92 Aligned_cols=134 Identities=22% Similarity=0.272 Sum_probs=86.9
Q ss_pred CCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCc------ccc--cccccchHHHHHHHHHHHHHh
Q 003094 216 RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGL------LVA--GTKYRGEFEERLKKLMEEIKQ 287 (848)
Q Consensus 216 ~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~------l~~--~~~~~g~~~~~l~~l~~~~~~ 287 (848)
..+..+||.||.|+|||+++..+|+.. +.+++.++-.. ++. -....|+...+-..+...+++
T Consensus 438 ~~~~pillqG~tssGKtsii~~la~~~----------g~~~vrinnhehtd~qeyig~y~~~~~g~l~freg~LV~Alr~ 507 (1856)
T KOG1808|consen 438 SGKFPILLQGPTSSGKTSIIKELARAT----------GKNIVRINNHEHTDLQEYIGTYVADDNGDLVFREGVLVQALRN 507 (1856)
T ss_pred cCCCCeEEecCcCcCchhHHHHHHHHh----------ccCceehhccccchHHHHHHhhhcCCCCCeeeehhHHHHHHHh
Confidence 345689999999999999999999998 44555554322 221 122334555566667777666
Q ss_pred CCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcC----------------CceEEEEeeChHH-HHhhhhcChhhhcc
Q 003094 288 SDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR----------------GELQCIGATTLDE-YRKHIEKDPALERR 350 (848)
Q Consensus 288 ~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~----------------~~v~vI~atn~~~-~~~~~~~d~al~~R 350 (848)
+. ++|+||++... .+..+.|.++++. ..+.++++-|++. |.....+..++.+|
T Consensus 508 G~--~~vlD~lnla~--------~dvL~aLnrllddnRel~ipe~~rlv~~h~~f~lfatqn~~~~y~grk~lsRa~~~r 577 (1856)
T KOG1808|consen 508 GD--WIVLDELNLAP--------HDVLEALNRLLDDNRELFIPETQRLVKAHPEFMLFATQNPPGTYGGRKILSRALRNR 577 (1856)
T ss_pred CC--EEEeccccccc--------hHHHHHHHhhhhhhccccccccceeeccCcchhhhhhccCccccchhhhhhhccccc
Confidence 54 89999999863 4577777777753 2244455545442 33444566777778
Q ss_pred cCCCcCCCCCHHHHHHHHH
Q 003094 351 FQPVKVPEPSVDETIQILK 369 (848)
Q Consensus 351 f~~i~~~~p~~~e~~~Il~ 369 (848)
|..+.|..-..++...|+.
T Consensus 578 f~e~~f~~~~e~e~~~i~~ 596 (1856)
T KOG1808|consen 578 FIELHFDDIGEEELEEILE 596 (1856)
T ss_pred chhhhhhhcCchhhhhhhc
Confidence 8776666666666655555
No 467
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=98.32 E-value=5.3e-06 Score=83.75 Aligned_cols=134 Identities=16% Similarity=0.187 Sum_probs=90.4
Q ss_pred eEEEeecCCc-chHHHHHHHHHHHhcCCCCceEEecccccccccchhcccCCCC------CCcccccccchhHHHHc---
Q 003094 562 ASFIFSGPTG-VGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPP------GYVGYTEGGQLTEAVRR--- 631 (848)
Q Consensus 562 ~~lLl~Gp~G-tGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~------g~~g~~~~~~l~~~~~~--- 631 (848)
+.+||.|..+ +||..++..+++.+++.+ +++... ....++.... ...+.+..+.+.+.+..
T Consensus 16 hAYLfeG~n~~~~~~~~~~f~~~~l~~~~-----i~~~~H----PD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~ 86 (263)
T PRK06581 16 NSWLIEAENIEQALKDLEKFIYIKLFKNS-----IPLENN----PDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSA 86 (263)
T ss_pred heeeEeCCChhhHHHHHHHHHHHHHhccC-----cccCCC----CCEEEEeccccccccCCcccHHHHHHHHHHHhhCcc
Confidence 4599999998 999999999999986542 122221 1111222110 12222222334444432
Q ss_pred -CCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHH
Q 003094 632 -RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNR 710 (848)
Q Consensus 632 -~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~ 710 (848)
++..|++||++|+++..+.|+||+.||+ ++.+++||++|+....
T Consensus 87 ~g~~KViII~~ae~mt~~AANALLKtLEE-----------PP~~t~fILit~~~~~------------------------ 131 (263)
T PRK06581 87 ISGYKVAIIYSAELMNLNAANSCLKILED-----------APKNSYIFLITSRAAS------------------------ 131 (263)
T ss_pred cCCcEEEEEechHHhCHHHHHHHHHhhcC-----------CCCCeEEEEEeCChhh------------------------
Confidence 4567999999999999999999999998 4478899887753332
Q ss_pred HHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHHHH
Q 003094 711 IKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIM 752 (848)
Q Consensus 711 ~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~~~ 752 (848)
+.|.+++|| ..+.|+.+...+..+....+
T Consensus 132 ------------LLpTIrSRC-q~i~~~~p~~~~~~e~~~~~ 160 (263)
T PRK06581 132 ------------IISTIRSRC-FKINVRSSILHAYNELYSQF 160 (263)
T ss_pred ------------CchhHhhce-EEEeCCCCCHHHHHHHHHHh
Confidence 458889999 88889888876666555333
No 468
>PRK06526 transposase; Provisional
Probab=98.30 E-value=9.1e-07 Score=92.81 Aligned_cols=77 Identities=29% Similarity=0.416 Sum_probs=46.9
Q ss_pred CCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccccccccchHHHHHHHHHHHHHhCCCeEEEE
Q 003094 216 RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFI 295 (848)
Q Consensus 216 ~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~IL~I 295 (848)
....|++|+||||||||+++.+++..+... +..+++++...+...... ......+...+..+.. .-+|+|
T Consensus 96 ~~~~nlll~Gp~GtGKThLa~al~~~a~~~-------g~~v~f~t~~~l~~~l~~-~~~~~~~~~~l~~l~~--~dlLII 165 (254)
T PRK06526 96 TGKENVVFLGPPGTGKTHLAIGLGIRACQA-------GHRVLFATAAQWVARLAA-AHHAGRLQAELVKLGR--YPLLIV 165 (254)
T ss_pred hcCceEEEEeCCCCchHHHHHHHHHHHHHC-------CCchhhhhHHHHHHHHHH-HHhcCcHHHHHHHhcc--CCEEEE
Confidence 356799999999999999999999987542 455666555443321100 0000112222333332 349999
Q ss_pred cccchhh
Q 003094 296 DEVHTLI 302 (848)
Q Consensus 296 DEid~l~ 302 (848)
||++.+.
T Consensus 166 DD~g~~~ 172 (254)
T PRK06526 166 DEVGYIP 172 (254)
T ss_pred cccccCC
Confidence 9999863
No 469
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.29 E-value=2e-06 Score=90.37 Aligned_cols=103 Identities=18% Similarity=0.382 Sum_probs=67.4
Q ss_pred EEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhcccCCCCCCcccccccchhHHHHcCCCeEEEEcCC
Q 003094 563 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEI 642 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEi 642 (848)
+++|+||||||||.||-+|++.+...+.++..+..+++...-... +. + | .....+...+.+.+ ||||||+
T Consensus 107 nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~--~~----~-~-~~~~~l~~~l~~~d--lLIiDDl 176 (254)
T COG1484 107 NLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAA--FD----E-G-RLEEKLLRELKKVD--LLIIDDI 176 (254)
T ss_pred cEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHH--Hh----c-C-chHHHHHHHhhcCC--EEEEecc
Confidence 599999999999999999999987667778777777775431111 11 0 1 11123444455444 9999999
Q ss_pred CcCC--hHHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCch
Q 003094 643 EKAH--PDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSS 686 (848)
Q Consensus 643 d~l~--~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~ 686 (848)
...+ +...+.+.+++..... .... |+|||....
T Consensus 177 G~~~~~~~~~~~~~q~I~~r~~----------~~~~-~~tsN~~~~ 211 (254)
T COG1484 177 GYEPFSQEEADLLFQLISRRYE----------SRSL-IITSNLSFG 211 (254)
T ss_pred cCccCCHHHHHHHHHHHHHHHh----------hccc-eeecCCChH
Confidence 9854 4456677776654221 1223 899996554
No 470
>PF05729 NACHT: NACHT domain
Probab=98.27 E-value=9.1e-06 Score=79.54 Aligned_cols=144 Identities=18% Similarity=0.279 Sum_probs=84.0
Q ss_pred cEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccccccccchHHHH-----------HHH-HHHHHHhC
Q 003094 221 PCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEER-----------LKK-LMEEIKQS 288 (848)
Q Consensus 221 iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~~~~g~~~~~-----------l~~-l~~~~~~~ 288 (848)
++|+|+||+|||++++.++..+.....+... ..-++++.+......... ...... ... +.......
T Consensus 3 l~I~G~~G~GKStll~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQLAEEEPPPSK-FPYPFFFSLRDISDSNNS-RSLADLLFDQLPESIAPIEELLQELLEKN 80 (166)
T ss_pred EEEECCCCCChHHHHHHHHHHHHhcCccccc-ceEEEEEeehhhhhcccc-chHHHHHHHhhccchhhhHHHHHHHHHcC
Confidence 5789999999999999999998765432111 122344444443322111 011111 111 11223346
Q ss_pred CCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcC---CceEEEEeeChHHHHhhhhcChhhhccc---CCCcCCCCCHH
Q 003094 289 DEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR---GELQCIGATTLDEYRKHIEKDPALERRF---QPVKVPEPSVD 362 (848)
Q Consensus 289 ~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~---~~v~vI~atn~~~~~~~~~~d~al~~Rf---~~i~~~~p~~~ 362 (848)
..++|+||.+|.+.............+.|..++.. .++.+|.++++.... .+.+.+ ..+.++..+.+
T Consensus 81 ~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~-------~~~~~~~~~~~~~l~~~~~~ 153 (166)
T PF05729_consen 81 KRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFP-------DLRRRLKQAQILELEPFSEE 153 (166)
T ss_pred CceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHH-------HHHHhcCCCcEEEECCCCHH
Confidence 78899999999996532221222344455555542 457777777665531 244444 35899999999
Q ss_pred HHHHHHHHHHH
Q 003094 363 ETIQILKGLRE 373 (848)
Q Consensus 363 e~~~Il~~~~~ 373 (848)
+..++++.+..
T Consensus 154 ~~~~~~~~~f~ 164 (166)
T PF05729_consen 154 DIKQYLRKYFS 164 (166)
T ss_pred HHHHHHHHHhh
Confidence 99888886653
No 471
>KOG3595 consensus Dyneins, heavy chain [Cytoskeleton]
Probab=98.27 E-value=2.2e-05 Score=101.09 Aligned_cols=140 Identities=19% Similarity=0.314 Sum_probs=93.4
Q ss_pred CCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccccccccchHHHHHHHHHHHHHh-------CCCe
Q 003094 219 NNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQ-------SDEI 291 (848)
Q Consensus 219 ~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~~~~g~~~~~l~~l~~~~~~-------~~~~ 291 (848)
..++++||+|+|||.++.......... .++-++.+...++. .....+....+.-.. ....
T Consensus 128 k~~~~~g~~g~gk~~~~~~~~~~~~~~---------~~~~~~fs~~ts~~----~~q~~~~~~~~k~~~~~~~~~~~~~~ 194 (1395)
T KOG3595|consen 128 KPVLLVGPTGTGKTVLVLSELRSLQDR---------EVYLLNFSSVTSSE----LLQEIIESKLDKRRSGNYGPPLGKKL 194 (1395)
T ss_pred CeEEEEcCCCCCeeeehHHHHHhcccc---------hheEEeeeeeccHH----HHHHHHHHHHHHhcccCCCCCCCcee
Confidence 889999999999999888777665322 12223332222110 011111111111111 2246
Q ss_pred EEEEcccchhhhCCCCCchHHHHHHHhhhhcCC--------------ceEEEEeeChHHHHhhhhcChhhhcccCCCcCC
Q 003094 292 ILFIDEVHTLIGAGAAEGAIDAANILKPSLARG--------------ELQCIGATTLDEYRKHIEKDPALERRFQPVKVP 357 (848)
Q Consensus 292 IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~--------------~v~vI~atn~~~~~~~~~~d~al~~Rf~~i~~~ 357 (848)
++|+||++.- ..+..+..+....+++.++.+ ++.+++++++ .......+.+.+.|.|..+.++
T Consensus 195 ~~f~ddinmp--~~~~yg~q~~~~~lrq~~e~~g~~~~~~~~~~~i~~i~~~~a~~~-~~~gr~~i~~r~~r~f~~~~~~ 271 (1395)
T KOG3595|consen 195 VLFVDDINMP--ALDKYGDQPPIELLRQMLEHGGFYDRKKSEWVEIENVQLVGAMNP-PGGGRNDITERFLRHFLIVSLN 271 (1395)
T ss_pred EEEEeccCCc--hhhhcCCccHHHHHHHHHHhceeecccccceeEEeeeEEEeecCC-CCCccCcccHHHHHHeeeEeeC
Confidence 9999999974 334555666777888777632 3788999998 5566778899999999999999
Q ss_pred CCCHHHHHHHHHHHHHH
Q 003094 358 EPSVDETIQILKGLRER 374 (848)
Q Consensus 358 ~p~~~e~~~Il~~~~~~ 374 (848)
.|+.+...+|+..+...
T Consensus 272 ~~~~~sl~~if~~~~~~ 288 (1395)
T KOG3595|consen 272 YPSQESLTQIFNTILTG 288 (1395)
T ss_pred CCChhhHHHHHHHHHhc
Confidence 99999999999988764
No 472
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.27 E-value=3e-06 Score=92.04 Aligned_cols=121 Identities=22% Similarity=0.289 Sum_probs=71.6
Q ss_pred CCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCccccccccc-chHHHHHHHHHHHHHhCCCeEEEE
Q 003094 217 TKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYR-GEFEERLKKLMEEIKQSDEIILFI 295 (848)
Q Consensus 217 ~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~~~~-g~~~~~l~~l~~~~~~~~~~IL~I 295 (848)
...+++|+||+|||||+|+.++|+.+... +..|++++...+....+.. .+........++.+...+ +|+|
T Consensus 182 ~~~~Lll~G~~GtGKThLa~aIa~~l~~~-------g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~~~D--LLII 252 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNCIAKELLDR-------GKSVIYRTADELIEILREIRFNNDKELEEVYDLLINCD--LLII 252 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHC-------CCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhccCC--EEEE
Confidence 34889999999999999999999998642 6778888876654311100 000001111245555555 9999
Q ss_pred cccchhhhCCCCCchHHHHHHHhhhhcCCceEEEEeeCh--HHHHhhhhcChhhhccc
Q 003094 296 DEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATTL--DEYRKHIEKDPALERRF 351 (848)
Q Consensus 296 DEid~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~atn~--~~~~~~~~~d~al~~Rf 351 (848)
||++..... ......+.+++......+. .+|.|||. .++.. .+++++.+|+
T Consensus 253 DDlG~e~~t--~~~~~~Lf~iin~R~~~~k-~tIiTSNl~~~el~~--~~~eri~SRL 305 (329)
T PRK06835 253 DDLGTEKIT--EFSKSELFNLINKRLLRQK-KMIISTNLSLEELLK--TYSERISSRL 305 (329)
T ss_pred eccCCCCCC--HHHHHHHHHHHHHHHHCCC-CEEEECCCCHHHHHH--HHhHHHHHHH
Confidence 999876321 1112334455555444443 45556654 33322 2467788887
No 473
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.25 E-value=1.5e-06 Score=78.62 Aligned_cols=93 Identities=25% Similarity=0.434 Sum_probs=59.2
Q ss_pred EEeecCCcchHHHHHHHHHHHhcCC-----CCceEEecccccccccchhcccCCCCCCcccccccchhHHHHcCCCeEEE
Q 003094 564 FIFSGPTGVGKSELAKALAAYYFGS-----EEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVL 638 (848)
Q Consensus 564 lLl~Gp~GtGKT~lA~~la~~l~~~-----~~~~i~i~~~~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~Vl~ 638 (848)
+.|+||||+|||++|+.|++.+... ...++..+.. .+.+ .||. ...|++
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~~~~~--------~~~w---~gY~---------------~q~vvi 54 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYTRNPG--------DKFW---DGYQ---------------GQPVVI 54 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEeCCCc--------cchh---hccC---------------CCcEEE
Confidence 4789999999999999999887311 0111111100 0000 1222 235899
Q ss_pred EcCCCcCChH----HHHHHHhhhcCcEEEcCC----CceeecCCeEEEEecC
Q 003094 639 FDEIEKAHPD----VFNMMLQILEDGRLTDSK----GRTVDFKNTLLIMTSN 682 (848)
Q Consensus 639 lDEid~l~~~----~~~~Ll~~le~g~~~~~~----g~~v~~~~~iiI~tsN 682 (848)
+||+...... ....|+++++...+.... .+...+.--+||+|||
T Consensus 55 ~DD~~~~~~~~~~~~~~~l~~l~s~~~~~~~~a~~~~K~~~~~s~~vi~tsN 106 (107)
T PF00910_consen 55 IDDFGQDNDGYNYSDESELIRLISSNPFQPNMADLEDKGTPFNSKLVIITSN 106 (107)
T ss_pred EeecCccccccchHHHHHHHHHHhcCCcccccccHhhCCCccCCCEEEEcCC
Confidence 9999988754 788899999887665432 2224455568888888
No 474
>PRK06921 hypothetical protein; Provisional
Probab=98.25 E-value=3.2e-06 Score=89.52 Aligned_cols=122 Identities=23% Similarity=0.345 Sum_probs=65.7
Q ss_pred CCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccccccccchHHHHHHHHHHHHHhCCCeEEEEc
Q 003094 217 TKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFID 296 (848)
Q Consensus 217 ~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~IL~ID 296 (848)
...+++|+||||+|||+++.++++.+... .+..+++++...+....+ ..+ ......+..+.+.. +|+||
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~------~g~~v~y~~~~~l~~~l~--~~~-~~~~~~~~~~~~~d--lLiID 184 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRK------KGVPVLYFPFVEGFGDLK--DDF-DLLEAKLNRMKKVE--VLFID 184 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhh------cCceEEEEEHHHHHHHHH--HHH-HHHHHHHHHhcCCC--EEEEe
Confidence 46789999999999999999999988542 146677777654432110 111 11223334444443 99999
Q ss_pred ccch-hhhCCCCC--chHHHHHHHhhhhcCCceEEEEeeChHHHHhhhhcChhhhccc
Q 003094 297 EVHT-LIGAGAAE--GAIDAANILKPSLARGELQCIGATTLDEYRKHIEKDPALERRF 351 (848)
Q Consensus 297 Eid~-l~~~~~~~--~~~~~~~~L~~~l~~~~v~vI~atn~~~~~~~~~~d~al~~Rf 351 (848)
|++. +.+..... ....+..++.....++.. +|.+||.... ....+++.+.+|+
T Consensus 185 Dl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~-tIitsn~~~~-el~~~~~~l~sRi 240 (266)
T PRK06921 185 DLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKP-ILISSELTID-ELLDIDEALGSRI 240 (266)
T ss_pred ccccccCCCccCCHHHHHHHHHHHHHHHHCCCC-EEEECCCCHH-HHhhhhhHHHHHH
Confidence 9954 21111011 112244444444444433 4556664321 1112356666654
No 475
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.24 E-value=7.8e-07 Score=88.30 Aligned_cols=118 Identities=22% Similarity=0.259 Sum_probs=63.2
Q ss_pred HHHHHHHHhccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccccccccchHHHHHHHHHHH
Q 003094 205 QIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEE 284 (848)
Q Consensus 205 ~~~~l~~~l~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~~~~g~~~~~l~~l~~~ 284 (848)
.+..+...-......|++|+||||||||++|.++++.+.. .+..+.+++..++....+... .......+++.
T Consensus 34 ~~~~l~~~~~~~~~~~l~l~G~~G~GKThLa~ai~~~~~~-------~g~~v~f~~~~~L~~~l~~~~-~~~~~~~~~~~ 105 (178)
T PF01695_consen 34 QIAQLAALEFIENGENLILYGPPGTGKTHLAVAIANEAIR-------KGYSVLFITASDLLDELKQSR-SDGSYEELLKR 105 (178)
T ss_dssp HHHHHHHH-S-SC--EEEEEESTTSSHHHHHHHHHHHHHH-------TT--EEEEEHHHHHHHHHCCH-CCTTHCHHHHH
T ss_pred HHHHHhcCCCcccCeEEEEEhhHhHHHHHHHHHHHHHhcc-------CCcceeEeecCceeccccccc-cccchhhhcCc
Confidence 3444433323345689999999999999999999998765 267788888766643211100 00112334555
Q ss_pred HHhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCCceEEEEeeChHH
Q 003094 285 IKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATTLDE 336 (848)
Q Consensus 285 ~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~atn~~~ 336 (848)
+.+.. +|+|||+...... ......+.+++..-.++. .+|.|||...
T Consensus 106 l~~~d--lLilDDlG~~~~~--~~~~~~l~~ii~~R~~~~--~tIiTSN~~~ 151 (178)
T PF01695_consen 106 LKRVD--LLILDDLGYEPLS--EWEAELLFEIIDERYERK--PTIITSNLSP 151 (178)
T ss_dssp HHTSS--CEEEETCTSS-----HHHHHCTHHHHHHHHHT---EEEEEESS-H
T ss_pred ccccc--Eecccccceeeec--ccccccchhhhhHhhccc--CeEeeCCCch
Confidence 55554 8999999754211 011112333333333332 4666887643
No 476
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.24 E-value=4.4e-06 Score=86.75 Aligned_cols=191 Identities=19% Similarity=0.344 Sum_probs=95.4
Q ss_pred ccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccch------
Q 003094 533 VIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTV------ 606 (848)
Q Consensus 533 vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~------ 606 (848)
++|.+..++.|.+.+... +..+++++||.|+|||++.+.+.+.+-..+...+.+++.........
T Consensus 1 F~gR~~el~~l~~~l~~~---------~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~ 71 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG---------PSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEE 71 (234)
T ss_dssp S-S-HHHHHHHHHCHHH-----------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh---------cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHH
Confidence 357777777787777642 12358999999999999999999887322222222222111111000
Q ss_pred -------hcccCC-CCCCcc-----------cccccchhHHHHcC-CCeEEEEcCCCcCC------hHHHHHHHhhhcCc
Q 003094 607 -------SKLIGS-PPGYVG-----------YTEGGQLTEAVRRR-PYTVVLFDEIEKAH------PDVFNMMLQILEDG 660 (848)
Q Consensus 607 -------~~l~g~-~~g~~g-----------~~~~~~l~~~~~~~-~~~Vl~lDEid~l~------~~~~~~Ll~~le~g 660 (848)
...++. .++..+ ...-..+.+.+.+. ...||+|||++.+. +.....|...++..
T Consensus 72 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~ 151 (234)
T PF01637_consen 72 TSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSL 151 (234)
T ss_dssp HHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhc
Confidence 000111 010100 00112233444433 34899999999988 56777888877652
Q ss_pred EEEcCCCceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCC
Q 003094 661 RLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQL 740 (848)
Q Consensus 661 ~~~~~~g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l 740 (848)
. ...+..+|+++...+- ...+.. -.+++.+|+.. +.++|+
T Consensus 152 ~---------~~~~~~~v~~~S~~~~-----------------------------~~~~~~-~~~~~~~~~~~-~~l~~l 191 (234)
T PF01637_consen 152 L---------SQQNVSIVITGSSDSL-----------------------------MEEFLD-DKSPLFGRFSH-IELKPL 191 (234)
T ss_dssp ------------TTEEEEEEESSHHH-----------------------------HHHTT--TTSTTTT---E-EEE---
T ss_pred c---------ccCCceEEEECCchHH-----------------------------HHHhhc-ccCccccccce-EEEeeC
Confidence 2 1134445554431110 000111 13567889955 999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCeEeecHHHHHHHHHc
Q 003094 741 TKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEE 780 (848)
Q Consensus 741 ~~~el~~I~~~~l~~~~~~~~~~~~~l~i~~~a~~~l~~~ 780 (848)
+.++..+++.....+. ..+.++++.++.+...
T Consensus 192 ~~~e~~~~~~~~~~~~--------~~~~~~~~~~~~i~~~ 223 (234)
T PF01637_consen 192 SKEEAREFLKELFKEL--------IKLPFSDEDIEEIYSL 223 (234)
T ss_dssp -HHHHHHHHHHHHHCC--------------HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHh--------hcccCCHHHHHHHHHH
Confidence 9999999987765542 2223578888877763
No 477
>PRK08181 transposase; Validated
Probab=98.22 E-value=3.3e-06 Score=89.02 Aligned_cols=102 Identities=13% Similarity=0.290 Sum_probs=65.7
Q ss_pred EEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhcccCCCCCCcccccccchhHHHHcCCCeEEEEcCC
Q 003094 563 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEI 642 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEi 642 (848)
+++|+||||||||.||.+++..+...+..++.+++.++...-.... ... ....+...+.+ ..+|+|||+
T Consensus 108 nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~--------~~~-~~~~~l~~l~~--~dLLIIDDl 176 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVAR--------REL-QLESAIAKLDK--FDLLILDDL 176 (269)
T ss_pred eEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHH--------hCC-cHHHHHHHHhc--CCEEEEecc
Confidence 5999999999999999999988766666777677666544321110 000 00122333333 349999999
Q ss_pred CcCCh--HHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCch
Q 003094 643 EKAHP--DVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSS 686 (848)
Q Consensus 643 d~l~~--~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~ 686 (848)
+..+. ..++.|.++++.-. .+.-+|+|||.+..
T Consensus 177 g~~~~~~~~~~~Lf~lin~R~-----------~~~s~IiTSN~~~~ 211 (269)
T PRK08181 177 AYVTKDQAETSVLFELISARY-----------ERRSILITANQPFG 211 (269)
T ss_pred ccccCCHHHHHHHHHHHHHHH-----------hCCCEEEEcCCCHH
Confidence 97754 45677888887421 11237889997654
No 478
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.20 E-value=6.2e-06 Score=86.95 Aligned_cols=170 Identities=16% Similarity=0.241 Sum_probs=102.1
Q ss_pred cccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhcccC
Q 003094 532 RVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIG 611 (848)
Q Consensus 532 ~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g 611 (848)
+++--+++++.|.+..+.. +.|.+|.||.|..|+||+++++..|... +..++.+.+..-
T Consensus 9 ~lVlf~~ai~hi~ri~RvL-------~~~~Gh~LLvG~~GsGr~sl~rLaa~i~---~~~~~~i~~~~~----------- 67 (268)
T PF12780_consen 9 NLVLFDEAIEHIARISRVL-------SQPRGHALLVGVGGSGRQSLARLAAFIC---GYEVFQIEITKG----------- 67 (268)
T ss_dssp -----HHHHHHHHHHHHHH-------CSTTEEEEEECTTTSCHHHHHHHHHHHT---TEEEE-TTTSTT-----------
T ss_pred ceeeHHHHHHHHHHHHHHH-------cCCCCCeEEecCCCccHHHHHHHHHHHh---ccceEEEEeeCC-----------
Confidence 3455667888888877765 4667899999999999999999877665 555555544321
Q ss_pred CCCCCcccccccchhHHHH----cCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCce-e----------------
Q 003094 612 SPPGYVGYTEGGQLTEAVR----RRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRT-V---------------- 670 (848)
Q Consensus 612 ~~~g~~g~~~~~~l~~~~~----~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~-v---------------- 670 (848)
|.-.+-...+..++. +..+.|++|+|-+-..+.+++.+..+|..|++++..... .
T Consensus 68 ----y~~~~f~~dLk~~~~~ag~~~~~~vfll~d~qi~~~~fLe~in~LL~sGeip~LF~~eE~~~i~~~l~~~~~~~~~ 143 (268)
T PF12780_consen 68 ----YSIKDFKEDLKKALQKAGIKGKPTVFLLTDSQIVDESFLEDINSLLSSGEIPNLFTKEELDNIISSLREEAKAEGI 143 (268)
T ss_dssp ----THHHHHHHHHHHHHHHHHCS-S-EEEEEECCCSSSCHHHHHHHHHHHCSS-TTTS-TCHHHHHHHHHHHHHHHCT-
T ss_pred ----cCHHHHHHHHHHHHHHHhccCCCeEEEecCcccchHhHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHHHHHHcCC
Confidence 111110122222222 455789999999988899999999999999876432110 0
Q ss_pred --------------ecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEE
Q 003094 671 --------------DFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIV 736 (848)
Q Consensus 671 --------------~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~ 736 (848)
...|..||++.+...... +..+ .. -|+|+++| .+.+
T Consensus 144 ~~~~~~~~~~F~~rvr~nLHivl~~sp~~~~~---------------------------r~~~-~~-fPaL~~~c-tIdW 193 (268)
T PF12780_consen 144 SDSRESLYEFFIERVRKNLHIVLCMSPVGPNF---------------------------RDRC-RS-FPALVNCC-TIDW 193 (268)
T ss_dssp -SSHHHHHHHHHHHHCCCEEEEEEESTTTTCC---------------------------CHHH-HH-HCCHHHHS-EEEE
T ss_pred CCchHHHHHHHHHHHHhheeEEEEECCCCchH---------------------------HHHH-Hh-Ccchhccc-EEEe
Confidence 012333333322111100 0000 11 38899988 9999
Q ss_pred cCCCCHHHHHHHHHHHHHHH
Q 003094 737 FRQLTKLEVKEIADIMLKEV 756 (848)
Q Consensus 737 f~~l~~~el~~I~~~~l~~~ 756 (848)
|.+++.+.+..+...++...
T Consensus 194 ~~~W~~eaL~~Va~~~l~~~ 213 (268)
T PF12780_consen 194 FDPWPEEALLSVANKFLSDI 213 (268)
T ss_dssp EES--HHHHHHHHHHHCCHH
T ss_pred CCcCCHHHHHHHHHHHHHhh
Confidence 99999999999998888764
No 479
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.20 E-value=4.3e-05 Score=80.48 Aligned_cols=218 Identities=13% Similarity=0.152 Sum_probs=117.5
Q ss_pred HHHHhhccccChHHHHHHHHHHHHHHHccCCCCCC-CceEEEeecCCcchHHHHHHHHHHHhc---C---CCCceEEecc
Q 003094 525 MEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNR-PIASFIFSGPTGVGKSELAKALAAYYF---G---SEEAMIRLDM 597 (848)
Q Consensus 525 l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~-p~~~lLl~Gp~GtGKT~lA~~la~~l~---~---~~~~~i~i~~ 597 (848)
+........||-..+.+.+.+.-.... .|.+ -..++|++|++|.|||++++.+.+... . ...|++.+.+
T Consensus 28 I~~i~~~rWIgY~~A~~~L~~L~~Ll~----~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~ 103 (302)
T PF05621_consen 28 IAYIRADRWIGYPRAKEALDRLEELLE----YPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQM 103 (302)
T ss_pred HHHHhcCCeecCHHHHHHHHHHHHHHh----CCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEec
Confidence 333446678888877766555444322 2222 225699999999999999999987651 1 1246777776
Q ss_pred cccccccchh----cccCCCCCCccc--ccccchhHHHHcCCCeEEEEcCCCcC---Ch----HHHHHHHhhhcCcEEEc
Q 003094 598 SEFMERHTVS----KLIGSPPGYVGY--TEGGQLTEAVRRRPYTVVLFDEIEKA---HP----DVFNMMLQILEDGRLTD 664 (848)
Q Consensus 598 ~~~~~~~~~~----~l~g~~~g~~g~--~~~~~l~~~~~~~~~~Vl~lDEid~l---~~----~~~~~Ll~~le~g~~~~ 664 (848)
..-.+....+ .-+|.|-..... .........++...-.+|+|||++.+ +. .++|.|..+-.+..++
T Consensus 104 P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ip- 182 (302)
T PF05621_consen 104 PPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIP- 182 (302)
T ss_pred CCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCC-
Confidence 5544333222 123443221111 11123456677888889999999986 22 3444444443333322
Q ss_pred CCCceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHh-hcChhhhhccCeEEEcCCCCH-
Q 003094 665 SKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQ-YFRPEFLNRLDEMIVFRQLTK- 742 (848)
Q Consensus 665 ~~g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~ll~R~d~~i~f~~l~~- 742 (848)
+|+..... .... .-++.+.+|| ..+..+++..
T Consensus 183 ------------iV~vGt~~---------------------------------A~~al~~D~QLa~RF-~~~~Lp~W~~d 216 (302)
T PF05621_consen 183 ------------IVGVGTRE---------------------------------AYRALRTDPQLASRF-EPFELPRWELD 216 (302)
T ss_pred ------------eEEeccHH---------------------------------HHHHhccCHHHHhcc-CCccCCCCCCC
Confidence 33332200 0010 1258899999 7788888876
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHHHHHH
Q 003094 743 LEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLE 800 (848)
Q Consensus 743 ~el~~I~~~~l~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~l~ 800 (848)
++...++ ..+...+-.+...---+++...+|...+- +...++.+.+...-.
T Consensus 217 ~ef~~LL----~s~e~~LPLr~~S~l~~~~la~~i~~~s~---G~iG~l~~ll~~aA~ 267 (302)
T PF05621_consen 217 EEFRRLL----ASFERALPLRKPSNLASPELARRIHERSE---GLIGELSRLLNAAAI 267 (302)
T ss_pred cHHHHHH----HHHHHhCCCCCCCCCCCHHHHHHHHHHcC---CchHHHHHHHHHHHH
Confidence 4554444 33333332222111135566677776311 234556555554433
No 480
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.20 E-value=1.9e-05 Score=81.69 Aligned_cols=124 Identities=12% Similarity=-0.018 Sum_probs=84.5
Q ss_pred CCCCcEEECCCCCcHHHHHHHHHHHhhCCCCC------------CCCCCceEEEEeCCcccccccccchHHHHHHHHHHH
Q 003094 217 TKNNPCLIGEPGVGKTAIAEGLAQRIASGDVP------------DTIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEE 284 (848)
Q Consensus 217 ~~~~iLL~GppGtGKT~la~~la~~l~~~~~~------------~~l~~~~v~~~~~~~l~~~~~~~g~~~~~l~~l~~~ 284 (848)
.+...||+||+|+||..+|..+|+.+.+.... ......+++.+.... .. -..+.++.+.+.
T Consensus 6 ~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~-----~~--I~id~ir~l~~~ 78 (261)
T PRK05818 6 KTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQK-----NP--IKKEDALSIINK 78 (261)
T ss_pred CCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCc-----cc--CCHHHHHHHHHH
Confidence 45567899999999999999999998764321 112233444432211 00 112334444443
Q ss_pred HH-----hCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhc--CCceEEEEeeChHHHHhhhhcChhhhcccCCCcCC
Q 003094 285 IK-----QSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLA--RGELQCIGATTLDEYRKHIEKDPALERRFQPVKVP 357 (848)
Q Consensus 285 ~~-----~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~--~~~v~vI~atn~~~~~~~~~~d~al~~Rf~~i~~~ 357 (848)
+. .++..|++||++|.+. ..+.|.|+..+| ..+.++|.+|+.++ .+.|.++||++.+.|+
T Consensus 79 l~~~s~e~~~~KV~II~~ae~m~--------~~AaNaLLK~LEEPp~~t~fiLit~~~~-----~lLpTI~SRCq~~~~~ 145 (261)
T PRK05818 79 LNRPSVESNGKKIYIIYGIEKLN--------KQSANSLLKLIEEPPKNTYGIFTTRNEN-----NILNTILSRCVQYVVL 145 (261)
T ss_pred HccCchhcCCCEEEEeccHhhhC--------HHHHHHHHHhhcCCCCCeEEEEEECChH-----hCchHhhhheeeeecC
Confidence 32 2346799999999994 458999999998 45677788887776 6899999999988888
Q ss_pred CCC
Q 003094 358 EPS 360 (848)
Q Consensus 358 ~p~ 360 (848)
.+.
T Consensus 146 ~~~ 148 (261)
T PRK05818 146 SKE 148 (261)
T ss_pred Chh
Confidence 773
No 481
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.20 E-value=1.3e-06 Score=82.12 Aligned_cols=97 Identities=21% Similarity=0.351 Sum_probs=62.6
Q ss_pred EEEeecCCcchHHHHHHHHHHHhcCC-----CCceEEecccccccccchh----cccCCCCCC--cccccccchhHHHHc
Q 003094 563 SFIFSGPTGVGKSELAKALAAYYFGS-----EEAMIRLDMSEFMERHTVS----KLIGSPPGY--VGYTEGGQLTEAVRR 631 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l~~~-----~~~~i~i~~~~~~~~~~~~----~l~g~~~g~--~g~~~~~~l~~~~~~ 631 (848)
.++++||+|+|||++++.+++.+... ..+++.+++.......... .-++.+... ....-...+...+.+
T Consensus 6 ~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~~ 85 (131)
T PF13401_consen 6 ILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALDR 85 (131)
T ss_dssp -EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHHH
T ss_pred ccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHHh
Confidence 58999999999999999999886321 5667777777655222211 122322211 000011344555566
Q ss_pred CCCeEEEEcCCCcC-ChHHHHHHHhhhcC
Q 003094 632 RPYTVVLFDEIEKA-HPDVFNMMLQILED 659 (848)
Q Consensus 632 ~~~~Vl~lDEid~l-~~~~~~~Ll~~le~ 659 (848)
....+|+|||+|.+ +..+++.|..+++.
T Consensus 86 ~~~~~lviDe~~~l~~~~~l~~l~~l~~~ 114 (131)
T PF13401_consen 86 RRVVLLVIDEADHLFSDEFLEFLRSLLNE 114 (131)
T ss_dssp CTEEEEEEETTHHHHTHHHHHHHHHHTCS
T ss_pred cCCeEEEEeChHhcCCHHHHHHHHHHHhC
Confidence 66579999999999 99999999998874
No 482
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.20 E-value=6.5e-05 Score=85.22 Aligned_cols=139 Identities=19% Similarity=0.297 Sum_probs=82.3
Q ss_pred CCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccccccccchHHHHHHHHH---HHHHhCCCeEEEE
Q 003094 219 NNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEERLKKLM---EEIKQSDEIILFI 295 (848)
Q Consensus 219 ~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~~~~g~~~~~l~~l~---~~~~~~~~~IL~I 295 (848)
-||||+|.||||||-+.+.+++....+..-.- +|.. .+-+..... + .++ .+++. ..+-..+++|.+|
T Consensus 463 INILL~GDPGtsKSqlLqyv~~l~pRg~yTSG-kGsS--avGLTayVt--r-d~d----tkqlVLesGALVLSD~GiCCI 532 (804)
T KOG0478|consen 463 INILLVGDPGTSKSQLLQYCHRLLPRGVYTSG-KGSS--AVGLTAYVT--K-DPD----TRQLVLESGALVLSDNGICCI 532 (804)
T ss_pred ceEEEecCCCcCHHHHHHHHHHhCCcceeecC-Cccc--hhcceeeEE--e-cCc----cceeeeecCcEEEcCCceEEc
Confidence 58999999999999999999988765432100 0000 000000000 0 000 00110 0011234568999
Q ss_pred cccchhhhCCCCCchHHHHHHHhhhhc---------------CCceEEEEeeChHHH--------HhhhhcChhhhcccC
Q 003094 296 DEVHTLIGAGAAEGAIDAANILKPSLA---------------RGELQCIGATTLDEY--------RKHIEKDPALERRFQ 352 (848)
Q Consensus 296 DEid~l~~~~~~~~~~~~~~~L~~~l~---------------~~~v~vI~atn~~~~--------~~~~~~d~al~~Rf~ 352 (848)
||+|.|..+ ....|.+.|+ +.+.-|++++|+... .+-+.++|.|+|||+
T Consensus 533 DEFDKM~dS--------trSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLSRFD 604 (804)
T KOG0478|consen 533 DEFDKMSDS--------TRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLSRFD 604 (804)
T ss_pred hhhhhhhHH--------HHHHHHHHHHHhhhhHhhcceeeeccccceeeeeeccccccCCCCCchhhccCCChhhhhhhc
Confidence 999999533 5566666665 334678899996432 234578899999998
Q ss_pred --CCcCCCCCHHHHHHHHHHHHHHH
Q 003094 353 --PVKVPEPSVDETIQILKGLRERY 375 (848)
Q Consensus 353 --~i~~~~p~~~e~~~Il~~~~~~~ 375 (848)
.+.++.|+.-.-+.+...+..-|
T Consensus 605 LIylllD~~DE~~Dr~La~HivsLy 629 (804)
T KOG0478|consen 605 LIFLLLDKPDERSDRRLADHIVALY 629 (804)
T ss_pred EEEEEecCcchhHHHHHHHHHHHhc
Confidence 45678888775555655555443
No 483
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.19 E-value=3.1e-06 Score=84.72 Aligned_cols=48 Identities=38% Similarity=0.588 Sum_probs=33.7
Q ss_pred CccCChHHHHHHHHHh---ccCCCCCcEEECCCCCcHHHHHHHHHHHhhCC
Q 003094 198 PVVGRQPQIERVVQIL---GRRTKNNPCLIGEPGVGKTAIAEGLAQRIASG 245 (848)
Q Consensus 198 ~iiG~~~~~~~l~~~l---~~~~~~~iLL~GppGtGKT~la~~la~~l~~~ 245 (848)
+++||+++++++...+ ....+++++|+|++|+|||++++.+...+...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 3789999999999988 33556788999999999999999999888653
No 484
>PHA00729 NTP-binding motif containing protein
Probab=98.18 E-value=3.8e-06 Score=85.25 Aligned_cols=126 Identities=12% Similarity=0.114 Sum_probs=71.6
Q ss_pred HHHHHhccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCC------CCCCCceEEEEeCCcccccccccchHHHHHHHH
Q 003094 208 RVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVP------DTIEGKKVITLDMGLLVAGTKYRGEFEERLKKL 281 (848)
Q Consensus 208 ~l~~~l~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~------~~l~~~~v~~~~~~~l~~~~~~~g~~~~~l~~l 281 (848)
.+.+.+......|++|+|+||||||++|.++++.+...... ....+..++.++...+ ...+...
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~~~~~~fid~~~L----------l~~L~~a 76 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQYVQNSYFFELPDA----------LEKIQDA 76 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhcCCcEEEEEHHHH----------HHHHHHH
Confidence 44555555666799999999999999999999987411000 0001222333332222 1222222
Q ss_pred HHHHHhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCCceEEEEeeChHHHHhhhhcChhhhcccCCCcCCCCCH
Q 003094 282 MEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSV 361 (848)
Q Consensus 282 ~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~atn~~~~~~~~~~d~al~~Rf~~i~~~~p~~ 361 (848)
++... ..-+|+|||+..-.... ... .+ .+..++.+.+++++|++.+.|..+++
T Consensus 77 ~~~~~--~~dlLIIDd~G~~~~~~----------~wh--~~-------------~~~~yf~L~~aLrSR~~l~il~~ls~ 129 (226)
T PHA00729 77 IDNDY--RIPLIIFDDAGIWLSKY----------VWY--ED-------------YMKTFYKIYALIRTRVSAVIFTTPSP 129 (226)
T ss_pred HhcCC--CCCEEEEeCCchhhccc----------chh--hh-------------ccchHHHHHHHHHhhCcEEEEecCCH
Confidence 21111 11278999976543110 000 00 01122357888888999999999999
Q ss_pred HHHHHHHHH
Q 003094 362 DETIQILKG 370 (848)
Q Consensus 362 ~e~~~Il~~ 370 (848)
++..+.++.
T Consensus 130 edL~~~Lr~ 138 (226)
T PHA00729 130 EDLAFYLRE 138 (226)
T ss_pred HHHHHHHHh
Confidence 988887775
No 485
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.17 E-value=1.2e-05 Score=86.61 Aligned_cols=173 Identities=17% Similarity=0.188 Sum_probs=91.9
Q ss_pred ChHHHHHHHHHhcc--CCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccc------------c
Q 003094 202 RQPQIERVVQILGR--RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVA------------G 267 (848)
Q Consensus 202 ~~~~~~~l~~~l~~--~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~------------~ 267 (848)
||.++++|.+.|.. ....-+.|+|++|+|||++|..+++....... . ..+++++.+.... +
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~---f--~~v~wv~~~~~~~~~~~~~~i~~~l~ 75 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNR---F--DGVIWVSLSKNPSLEQLLEQILRQLG 75 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCC---C--TEEEEEEEES-SCCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccc---c--cccccccccccccccccccccccccc
Confidence 57889999998887 45555779999999999999999987331111 1 2345555432211 0
Q ss_pred cc-----ccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhc--CCceEEEEeeChHHHHhh
Q 003094 268 TK-----YRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLA--RGELQCIGATTLDEYRKH 340 (848)
Q Consensus 268 ~~-----~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~--~~~v~vI~atn~~~~~~~ 340 (848)
.. .....+.....+.+. -...+++|++|+++... ..+.+...+. ..+..+|.||.....
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~-L~~~~~LlVlDdv~~~~----------~~~~l~~~~~~~~~~~kilvTTR~~~v--- 141 (287)
T PF00931_consen 76 EPDSSISDPKDIEELQDQLREL-LKDKRCLLVLDDVWDEE----------DLEELREPLPSFSSGSKILVTTRDRSV--- 141 (287)
T ss_dssp CC-STSSCCSSHHHHHHHHHHH-HCCTSEEEEEEEE-SHH----------HH-------HCHHSS-EEEEEESCGGG---
T ss_pred ccccccccccccccccccchhh-hccccceeeeeeecccc----------ccccccccccccccccccccccccccc---
Confidence 00 112233333333333 33558999999998763 1212222221 224567777765432
Q ss_pred hhcChhhhcccCCCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhc
Q 003094 341 IEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQ 397 (848)
Q Consensus 341 ~~~d~al~~Rf~~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~ 397 (848)
-..+......+.++..+.++..+++......-. .......++....+++.+.+
T Consensus 142 ---~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~~i~~~c~g 194 (287)
T PF00931_consen 142 ---AGSLGGTDKVIELEPLSEEEALELFKKRAGRKE-SESPEDLEDLAKEIVEKCGG 194 (287)
T ss_dssp ---GTTHHSCEEEEECSS--HHHHHHHHHHHHTSHS-----TTSCTHHHHHHHHTTT
T ss_pred ---ccccccccccccccccccccccccccccccccc-cccccccccccccccccccc
Confidence 112221245789999999999999887754221 00111223445566666554
No 486
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.17 E-value=2e-05 Score=91.90 Aligned_cols=156 Identities=18% Similarity=0.209 Sum_probs=94.1
Q ss_pred CCCccCChHHHHHHHHHhccC------------CCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCC-
Q 003094 196 LDPVVGRQPQIERVVQILGRR------------TKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMG- 262 (848)
Q Consensus 196 ld~iiG~~~~~~~l~~~l~~~------------~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~- 262 (848)
...+.|.+.+++.+.-.|-.. .--|+||+|.||+|||.+.+.+++....+ + +.+..
T Consensus 285 aPsIyG~e~VKkAilLqLfgGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~----------v-ytsgkg 353 (682)
T COG1241 285 APSIYGHEDVKKAILLQLFGGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRG----------V-YTSGKG 353 (682)
T ss_pred cccccCcHHHHHHHHHHhcCCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCce----------E-EEcccc
Confidence 446889999888765554321 12589999999999999999999877432 1 12110
Q ss_pred ----cccc---cccccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCC-----------
Q 003094 263 ----LLVA---GTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARG----------- 324 (848)
Q Consensus 263 ----~l~~---~~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~----------- 324 (848)
.+.. ..+..|+ +.+.. ..+--++++|.+|||+|.+.. .-...+...|+..
T Consensus 354 ss~~GLTAav~rd~~tge--~~Lea--GALVlAD~Gv~cIDEfdKm~~--------~dr~aihEaMEQQtIsIaKAGI~a 421 (682)
T COG1241 354 SSAAGLTAAVVRDKVTGE--WVLEA--GALVLADGGVCCIDEFDKMNE--------EDRVAIHEAMEQQTISIAKAGITA 421 (682)
T ss_pred ccccCceeEEEEccCCCe--EEEeC--CEEEEecCCEEEEEeccCCCh--------HHHHHHHHHHHhcEeeecccceee
Confidence 0000 0000010 00000 011124467999999999842 2455566666532
Q ss_pred ----ceEEEEeeChHHH--------HhhhhcChhhhcccC--CCcCCCCCHHHHHHHHHHHHHH
Q 003094 325 ----ELQCIGATTLDEY--------RKHIEKDPALERRFQ--PVKVPEPSVDETIQILKGLRER 374 (848)
Q Consensus 325 ----~v~vI~atn~~~~--------~~~~~~d~al~~Rf~--~i~~~~p~~~e~~~Il~~~~~~ 374 (848)
+.-+++|+|+..- ...+.+++.|++||+ .+..+.|+.+.-..+...++..
T Consensus 422 tLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLSRFDLifvl~D~~d~~~D~~ia~hil~~ 485 (682)
T COG1241 422 TLNARCSVLAAANPKFGRYDPKKTVAENINLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILDK 485 (682)
T ss_pred ecchhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHhhCCeeEEecCCCCccchHHHHHHHHHH
Confidence 2456677776541 235678899999998 4566778887666666666654
No 487
>PRK09183 transposase/IS protein; Provisional
Probab=98.17 E-value=4.9e-06 Score=87.85 Aligned_cols=78 Identities=27% Similarity=0.295 Sum_probs=48.5
Q ss_pred cCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccccccccchHHHHHHHHHHHHHhCCCeEEE
Q 003094 215 RRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILF 294 (848)
Q Consensus 215 ~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~IL~ 294 (848)
.....+++|+||||||||+++.+++..... .+..+.+++...+..... .......+...+.... ..+.+|+
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~-------~G~~v~~~~~~~l~~~l~-~a~~~~~~~~~~~~~~-~~~dlLi 169 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVR-------AGIKVRFTTAADLLLQLS-TAQRQGRYKTTLQRGV-MAPRLLI 169 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHH-------cCCeEEEEeHHHHHHHHH-HHHHCCcHHHHHHHHh-cCCCEEE
Confidence 345678999999999999999999887542 256677777655442110 0000011233333321 2345999
Q ss_pred Ecccchh
Q 003094 295 IDEVHTL 301 (848)
Q Consensus 295 IDEid~l 301 (848)
|||++..
T Consensus 170 iDdlg~~ 176 (259)
T PRK09183 170 IDEIGYL 176 (259)
T ss_pred EcccccC
Confidence 9999875
No 488
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.15 E-value=6.1e-06 Score=85.13 Aligned_cols=139 Identities=21% Similarity=0.263 Sum_probs=80.2
Q ss_pred HHHHHhccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccccccccchHHHHHHHHHHHHHh
Q 003094 208 RVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQ 287 (848)
Q Consensus 208 ~l~~~l~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~~~~g~~~~~l~~l~~~~~~ 287 (848)
.+.+.+. ...+..++||+|||||.+++.+|+.+ |..++.++|+...+- ..+.+++.-+..
T Consensus 24 ~l~~al~--~~~~~~~~GpagtGKtetik~La~~l----------G~~~~vfnc~~~~~~--------~~l~ril~G~~~ 83 (231)
T PF12774_consen 24 TLTQALS--LNLGGALSGPAGTGKTETIKDLARAL----------GRFVVVFNCSEQMDY--------QSLSRILKGLAQ 83 (231)
T ss_dssp HHHHHHC--TTTEEEEESSTTSSHHHHHHHHHHCT----------T--EEEEETTSSS-H--------HHHHHHHHHHHH
T ss_pred HHHHHhc--cCCCCCCcCCCCCCchhHHHHHHHHh----------CCeEEEecccccccH--------HHHHHHHHHHhh
Confidence 3444443 34566799999999999999999988 788999999876532 346666655554
Q ss_pred CCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhc---------------CCceEEEEeeChHHHHhhhhcChhhhcccC
Q 003094 288 SDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLA---------------RGELQCIGATTLDEYRKHIEKDPALERRFQ 352 (848)
Q Consensus 288 ~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~---------------~~~v~vI~atn~~~~~~~~~~d~al~~Rf~ 352 (848)
. ++++++||+++|...--+.-. +....+...+. +...-+..|+|+ .|....++++.++.-|.
T Consensus 84 ~-GaW~cfdefnrl~~~vLS~i~-~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np-~y~gr~~LP~nLk~lFR 160 (231)
T PF12774_consen 84 S-GAWLCFDEFNRLSEEVLSVIS-QQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNP-GYAGRSELPENLKALFR 160 (231)
T ss_dssp H-T-EEEEETCCCSSHHHHHHHH-HHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B--CCCC--S-HHHCTTEE
T ss_pred c-CchhhhhhhhhhhHHHHHHHH-HHHHHHHHhhcccccccccCCCEEEEccceeEEEeecc-ccCCcccCCHhHHHHhh
Confidence 4 569999999998422000000 01111111221 122455566664 45556678999999999
Q ss_pred CCcCCCCCHHHHHHHHH
Q 003094 353 PVKVPEPSVDETIQILK 369 (848)
Q Consensus 353 ~i~~~~p~~~e~~~Il~ 369 (848)
+|.+..||.....+++-
T Consensus 161 pvam~~PD~~~I~ei~L 177 (231)
T PF12774_consen 161 PVAMMVPDLSLIAEILL 177 (231)
T ss_dssp EEE--S--HHHHHHHHH
T ss_pred eeEEeCCCHHHHHHHHH
Confidence 99999999876655443
No 489
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.14 E-value=3.9e-06 Score=90.50 Aligned_cols=103 Identities=19% Similarity=0.315 Sum_probs=62.5
Q ss_pred CCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccccccccchH-HHHHHHHHHHHHhCCCeEEEE
Q 003094 217 TKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEF-EERLKKLMEEIKQSDEIILFI 295 (848)
Q Consensus 217 ~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~~~~g~~-~~~l~~l~~~~~~~~~~IL~I 295 (848)
...+++|+||+|||||+++.++|+.+... +..+.++.+..+....+ ... ...+...++.+.+.. +|+|
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~-------g~~v~~~~~~~l~~~lk--~~~~~~~~~~~l~~l~~~d--lLiI 223 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKK-------GVSSTLLHFPEFIRELK--NSISDGSVKEKIDAVKEAP--VLML 223 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHc-------CCCEEEEEHHHHHHHHH--HHHhcCcHHHHHHHhcCCC--EEEE
Confidence 45789999999999999999999999643 56677777655442111 000 012334555555555 9999
Q ss_pred cccchhhhCCCCCchHHHHHHHhhhhc---CCceEEEEeeChH
Q 003094 296 DEVHTLIGAGAAEGAIDAANILKPSLA---RGELQCIGATTLD 335 (848)
Q Consensus 296 DEid~l~~~~~~~~~~~~~~~L~~~l~---~~~v~vI~atn~~ 335 (848)
||+...... .-...++|..+++ ..+..+|.|||..
T Consensus 224 DDiG~e~~s-----~~~~~~ll~~Il~~R~~~~~~ti~TSNl~ 261 (306)
T PRK08939 224 DDIGAEQMS-----SWVRDEVLGVILQYRMQEELPTFFTSNFD 261 (306)
T ss_pred ecCCCcccc-----HHHHHHHHHHHHHHHHHCCCeEEEECCCC
Confidence 999764211 1111123333332 2456777788754
No 490
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.14 E-value=5.4e-05 Score=87.03 Aligned_cols=173 Identities=20% Similarity=0.285 Sum_probs=103.8
Q ss_pred CccCChHHHHHHHHHhc--cCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccccccccchHH
Q 003094 198 PVVGRQPQIERVVQILG--RRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFE 275 (848)
Q Consensus 198 ~iiG~~~~~~~l~~~l~--~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~~~~g~~~ 275 (848)
.++|....+..+...+. .....+++++|++||||+++++.+...... .+.+++.++|+.+... ..+
T Consensus 140 ~lig~s~~~~~~~~~i~~~~~~~~~vli~ge~g~gk~~~a~~ih~~s~~-------~~~~~i~~~c~~~~~~-----~~~ 207 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSAR-------SEKPLVTLNCAALNES-----LLE 207 (441)
T ss_pred ceEecCHHHHHHHHHHhhccCCCCeEEEEecCCCCHHHHHHHHHHcCCC-------CCCCeeeeeCCCCCHH-----HHH
Confidence 36666666665554332 245577899999999999999999876533 2467999999865310 011
Q ss_pred HHHHHHHH---------------HHHhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCCc-------------eE
Q 003094 276 ERLKKLME---------------EIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGE-------------LQ 327 (848)
Q Consensus 276 ~~l~~l~~---------------~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~~-------------v~ 327 (848)
..+|. ......+++|||||++.|. ...+..|..+++.+. +.
T Consensus 208 ---~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ldei~~l~--------~~~q~~l~~~l~~~~~~~~~~~~~~~~~~r 276 (441)
T PRK10365 208 ---SELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDIS--------PMMQVRLLRAIQEREVQRVGSNQTISVDVR 276 (441)
T ss_pred ---HHhcCCCCCCcCCCCcCCCCceeECCCCEEEEeccccCC--------HHHHHHHHHHHccCcEEeCCCCceeeeceE
Confidence 11111 1123446799999999994 446777777776443 56
Q ss_pred EEEeeChHHHHh--hhhcChhhhcccCCCcCCCCCHHHHHH----HHHHHHHHHhhhhc---CCCChHHHHHHHh
Q 003094 328 CIGATTLDEYRK--HIEKDPALERRFQPVKVPEPSVDETIQ----ILKGLRERYEIHHK---LRYTDEALVSAAQ 393 (848)
Q Consensus 328 vI~atn~~~~~~--~~~~d~al~~Rf~~i~~~~p~~~e~~~----Il~~~~~~~~~~~~---~~~s~~~l~~l~~ 393 (848)
+|++|+.+.... .-...+.|..|+..+.+..|+..+|.+ +++.++.++....+ ..++++++..+..
T Consensus 277 ii~~t~~~~~~~~~~~~~~~~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~ 351 (441)
T PRK10365 277 LIAATHRDLAAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIH 351 (441)
T ss_pred EEEeCCCCHHHHHHcCCchHHHHHHhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHh
Confidence 888887654221 112445566677766666666665544 44444443322211 2356666655544
No 491
>PF05729 NACHT: NACHT domain
Probab=98.13 E-value=1.2e-05 Score=78.57 Aligned_cols=145 Identities=15% Similarity=0.238 Sum_probs=81.3
Q ss_pred EEeecCCcchHHHHHHHHHHHhcCCC------CceEEeccccccccc---chhcccCCCCCCcccccccchhHHHHcCCC
Q 003094 564 FIFSGPTGVGKSELAKALAAYYFGSE------EAMIRLDMSEFMERH---TVSKLIGSPPGYVGYTEGGQLTEAVRRRPY 634 (848)
Q Consensus 564 lLl~Gp~GtGKT~lA~~la~~l~~~~------~~~i~i~~~~~~~~~---~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~ 634 (848)
++++|++|+|||++++.++..+.... .-.+.+.+....... ....++..............+.......+.
T Consensus 3 l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 82 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNKR 82 (166)
T ss_pred EEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCCc
Confidence 78999999999999999998774322 122344444443322 122222110000000000123345567778
Q ss_pred eEEEEcCCCcCChHH--------HHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCchhhhccCcccccccCCCcccc
Q 003094 635 TVVLFDEIEKAHPDV--------FNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDS 706 (848)
Q Consensus 635 ~Vl~lDEid~l~~~~--------~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~ 706 (848)
.+|+||-+|.+.... .+.|.+++.... ++++.+|+|+.....
T Consensus 83 ~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~----------~~~~~liit~r~~~~-------------------- 132 (166)
T PF05729_consen 83 VLLILDGLDELEEQDQSQERQRLLDLLSQLLPQAL----------PPGVKLIITSRPRAF-------------------- 132 (166)
T ss_pred eEEEEechHhcccchhhhHHHHHHHHHHHHhhhcc----------CCCCeEEEEEcCChH--------------------
Confidence 899999999987632 334555554311 246677777752211
Q ss_pred cHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHHHHHH
Q 003094 707 SYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLK 754 (848)
Q Consensus 707 ~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~~~l~ 754 (848)
..+...+.. . ..+...+++++++.+.++..+.
T Consensus 133 ----------~~~~~~~~~-----~-~~~~l~~~~~~~~~~~~~~~f~ 164 (166)
T PF05729_consen 133 ----------PDLRRRLKQ-----A-QILELEPFSEEDIKQYLRKYFS 164 (166)
T ss_pred ----------HHHHHhcCC-----C-cEEEECCCCHHHHHHHHHHHhh
Confidence 001111211 1 5688899999999999877654
No 492
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.11 E-value=0.00012 Score=83.63 Aligned_cols=217 Identities=18% Similarity=0.137 Sum_probs=136.7
Q ss_pred hhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhc-------CCCCceEEecccccc
Q 003094 529 LHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYF-------GSEEAMIRLDMSEFM 601 (848)
Q Consensus 529 l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~-------~~~~~~i~i~~~~~~ 601 (848)
..+.+.+.+.....|...++.... . ......+.+.|-||||||.+++.+-+.|- .+...++.+|.-.+.
T Consensus 394 vp~sLpcRe~E~~~I~~f~~~~i~---~-~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~ 469 (767)
T KOG1514|consen 394 VPESLPCRENEFSEIEDFLRSFIS---D-QGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLA 469 (767)
T ss_pred ccccccchhHHHHHHHHHHHhhcC---C-CCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeec
Confidence 456778888888888877765421 1 11123678899999999999888877653 244667888887776
Q ss_pred cccchhcccCCCCCCcccccccc-hhHHH--------HcCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeec
Q 003094 602 ERHTVSKLIGSPPGYVGYTEGGQ-LTEAV--------RRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDF 672 (848)
Q Consensus 602 ~~~~~~~l~g~~~g~~g~~~~~~-l~~~~--------~~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~ 672 (848)
..+.++.-+-. .+.|...... -.+++ .+.+.+||+|||.|.|-..-|..|+.+++--... .
T Consensus 470 ~~~~~Y~~I~~--~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~--------~ 539 (767)
T KOG1514|consen 470 SPREIYEKIWE--ALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLK--------N 539 (767)
T ss_pred CHHHHHHHHHH--hcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCC--------C
Confidence 66555432110 0222221111 01111 1345689999999999888899999999864422 2
Q ss_pred CCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCe-EEEcCCCCHHHHHHHHHH
Q 003094 673 KNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDE-MIVFRQLTKLEVKEIADI 751 (848)
Q Consensus 673 ~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~-~i~f~~l~~~el~~I~~~ 751 (848)
++.+||+.+|--.- . + +.|.+-.-+|++. -+.|.||+.+++.+|+..
T Consensus 540 sKLvvi~IaNTmdl-P---------------------------E----r~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~ 587 (767)
T KOG1514|consen 540 SKLVVIAIANTMDL-P---------------------------E----RLLMNRVSSRLGLTRICFQPYTHEQLQEIISA 587 (767)
T ss_pred CceEEEEecccccC-H---------------------------H----HHhccchhhhccceeeecCCCCHHHHHHHHHH
Confidence 45677777762110 0 0 1122333456654 499999999999999987
Q ss_pred HHHHHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHHHHHHH
Q 003094 752 MLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLED 801 (848)
Q Consensus 752 ~l~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~l~~ 801 (848)
.|... ..|+.++++..+.+--.-.+.+|.....+.++.+-
T Consensus 588 RL~~~----------~~f~~~aielvarkVAavSGDaRraldic~RA~Ei 627 (767)
T KOG1514|consen 588 RLKGL----------DAFENKAIELVARKVAAVSGDARRALDICRRAAEI 627 (767)
T ss_pred hhcch----------hhcchhHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 77653 23678888888876444455566665666665553
No 493
>PRK09183 transposase/IS protein; Provisional
Probab=98.10 E-value=3.6e-06 Score=88.83 Aligned_cols=101 Identities=20% Similarity=0.314 Sum_probs=61.4
Q ss_pred EEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhcccCCCCCCcccccccchhHHHH--cCCCeEEEEc
Q 003094 563 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVR--RRPYTVVLFD 640 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~--~~~~~Vl~lD 640 (848)
+++|+||||||||++|.+|+......+..+..+++.++...-... ... +.+...+. .....+++||
T Consensus 104 ~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a-----------~~~-~~~~~~~~~~~~~~dlLiiD 171 (259)
T PRK09183 104 NIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTA-----------QRQ-GRYKTTLQRGVMAPRLLIID 171 (259)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHH-----------HHC-CcHHHHHHHHhcCCCEEEEc
Confidence 589999999999999999987764445555555555443211000 000 11212221 1344699999
Q ss_pred CCCcC--ChHHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCch
Q 003094 641 EIEKA--HPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSS 686 (848)
Q Consensus 641 Eid~l--~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~ 686 (848)
|++.. +.+..+.|+++++... .+.-+|+|||.+..
T Consensus 172 dlg~~~~~~~~~~~lf~li~~r~-----------~~~s~iiTsn~~~~ 208 (259)
T PRK09183 172 EIGYLPFSQEEANLFFQVIAKRY-----------EKGSMILTSNLPFG 208 (259)
T ss_pred ccccCCCChHHHHHHHHHHHHHH-----------hcCcEEEecCCCHH
Confidence 99975 4566667888886522 11136889996654
No 494
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.10 E-value=7.3e-06 Score=88.39 Aligned_cols=104 Identities=24% Similarity=0.293 Sum_probs=64.2
Q ss_pred eEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhcccCCCCCCcccccccchhHHHHcCCCeEEEEcC
Q 003094 562 ASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDE 641 (848)
Q Consensus 562 ~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDE 641 (848)
.+++|+||+|||||.|+.+||+.+...+.+...+.++++...-. ..++. .........+.+++ ||+|||
T Consensus 157 ~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk--~~~~~-------~~~~~~l~~l~~~d--lLiIDD 225 (306)
T PRK08939 157 KGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELK--NSISD-------GSVKEKIDAVKEAP--VLMLDD 225 (306)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHH--HHHhc-------CcHHHHHHHhcCCC--EEEEec
Confidence 35999999999999999999999876667777777766543311 11111 01122334445444 999999
Q ss_pred CCcC--ChHHHHHHHhh-hcCcEEEcCCCceeecCCeEEEEecCCCch
Q 003094 642 IEKA--HPDVFNMMLQI-LEDGRLTDSKGRTVDFKNTLLIMTSNVGSS 686 (848)
Q Consensus 642 id~l--~~~~~~~Ll~~-le~g~~~~~~g~~v~~~~~iiI~tsN~~~~ 686 (848)
+..- ++.+...++.. ++.. +. .+--.|+|||+...
T Consensus 226 iG~e~~s~~~~~~ll~~Il~~R-~~---------~~~~ti~TSNl~~~ 263 (306)
T PRK08939 226 IGAEQMSSWVRDEVLGVILQYR-MQ---------EELPTFFTSNFDFD 263 (306)
T ss_pred CCCccccHHHHHHHHHHHHHHH-HH---------CCCeEEEECCCCHH
Confidence 9754 44455445443 3421 10 12347889997655
No 495
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.07 E-value=5.4e-05 Score=71.31 Aligned_cols=142 Identities=18% Similarity=0.252 Sum_probs=78.8
Q ss_pred CCCCcEEECCCCCcHHHHHHHHHHHhhCCCC-------CCC-----CCCceEEEEe-----------CCccccccccc--
Q 003094 217 TKNNPCLIGEPGVGKTAIAEGLAQRIASGDV-------PDT-----IEGKKVITLD-----------MGLLVAGTKYR-- 271 (848)
Q Consensus 217 ~~~~iLL~GppGtGKT~la~~la~~l~~~~~-------~~~-----l~~~~v~~~~-----------~~~l~~~~~~~-- 271 (848)
..-.+.++|+||+||||++..++..+....+ ++. ..|.+++.++ .+.... ++|.
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rv-GkY~V~ 82 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRV-GKYGVN 82 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCccc-ceEEee
Confidence 4456889999999999999999999876422 100 0111122111 000000 1121
Q ss_pred -chHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCCceEEEEeeChHHHHhhhhcChh---h
Q 003094 272 -GEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATTLDEYRKHIEKDPA---L 347 (848)
Q Consensus 272 -g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~atn~~~~~~~~~~d~a---l 347 (848)
..++......+..+.++.. +++|||+..|--. ...+...+...+..+.. +|++-.... .+|- +
T Consensus 83 v~~le~i~~~al~rA~~~aD-vIIIDEIGpMElk-----s~~f~~~ve~vl~~~kp-liatlHrrs------r~P~v~~i 149 (179)
T COG1618 83 VEGLEEIAIPALRRALEEAD-VIIIDEIGPMELK-----SKKFREAVEEVLKSGKP-LIATLHRRS------RHPLVQRI 149 (179)
T ss_pred HHHHHHHhHHHHHHHhhcCC-EEEEecccchhhc-----cHHHHHHHHHHhcCCCc-EEEEEeccc------CChHHHHh
Confidence 1333334444455444423 8899999988422 45577778888877665 666654432 2333 3
Q ss_pred hcccCCCcCCCCCHHHHHHHHHHHHHH
Q 003094 348 ERRFQPVKVPEPSVDETIQILKGLRER 374 (848)
Q Consensus 348 ~~Rf~~i~~~~p~~~e~~~Il~~~~~~ 374 (848)
.+++..+.| .+++.|-.|+..++..
T Consensus 150 k~~~~v~v~--lt~~NR~~i~~~Il~~ 174 (179)
T COG1618 150 KKLGGVYVF--LTPENRNRILNEILSV 174 (179)
T ss_pred hhcCCEEEE--EccchhhHHHHHHHHH
Confidence 335555554 4555555666665543
No 496
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=98.04 E-value=1.7e-05 Score=73.37 Aligned_cols=93 Identities=23% Similarity=0.452 Sum_probs=57.4
Q ss_pred CceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhcccCCCCCCcccccccchhHHHHcCCCeEEEE
Q 003094 560 PIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLF 639 (848)
Q Consensus 560 p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~Vl~l 639 (848)
-+.++|++|-||||||+++..||+.. .+..++++.+...... |.|+++. +...+|
T Consensus 6 ~~PNILvtGTPG~GKstl~~~lae~~-----~~~~i~isd~vkEn~l---------~~gyDE~-----------y~c~i~ 60 (176)
T KOG3347|consen 6 ERPNILVTGTPGTGKSTLAERLAEKT-----GLEYIEISDLVKENNL---------YEGYDEE-----------YKCHIL 60 (176)
T ss_pred cCCCEEEeCCCCCCchhHHHHHHHHh-----CCceEehhhHHhhhcc---------hhccccc-----------ccCccc
Confidence 34469999999999999999999876 3556677777544332 4555442 223456
Q ss_pred cCCCcCChHHHHHHHhhhc-CcEEEcCCCceeec---CCeEEEEecC
Q 003094 640 DEIEKAHPDVFNMMLQILE-DGRLTDSKGRTVDF---KNTLLIMTSN 682 (848)
Q Consensus 640 DEid~l~~~~~~~Ll~~le-~g~~~~~~g~~v~~---~~~iiI~tsN 682 (848)
|| ..+++.|-..|. .|.+.|-.|....+ -+.+|+++|.
T Consensus 61 DE-----dkv~D~Le~~m~~Gg~IVDyHgCd~FperwfdlVvVLr~~ 102 (176)
T KOG3347|consen 61 DE-----DKVLDELEPLMIEGGNIVDYHGCDFFPERWFDLVVVLRTP 102 (176)
T ss_pred cH-----HHHHHHHHHHHhcCCcEEeecccCccchhheeEEEEEecC
Confidence 65 234444444443 45555555443322 2678888874
No 497
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=98.03 E-value=4.7e-05 Score=81.67 Aligned_cols=208 Identities=20% Similarity=0.225 Sum_probs=121.5
Q ss_pred hccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccc------
Q 003094 530 HKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMER------ 603 (848)
Q Consensus 530 ~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~------ 603 (848)
.+.++|.++.++++...++.+..++...+ ..++|.||+|+|||++++.|-+.+-. .+++.+..+.+.+.
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~k---rIl~L~GPvg~GKSsl~~~Lk~~le~--y~~Y~l~~~Pm~e~PL~L~P 134 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERK---RILLLLGPVGGGKSSLAELLKRGLEE--YPIYTLKGCPMHEEPLHLFP 134 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccc---eEEEEECCCCCCHHHHHHHHHHHhhe--EEEEEecCCccccChhhhCC
Confidence 34799999999999999998887765533 24889999999999999999988721 13332211111000
Q ss_pred ------------------------cc------------------hhcccCC-----CCCCcccccccchh----------
Q 003094 604 ------------------------HT------------------VSKLIGS-----PPGYVGYTEGGQLT---------- 626 (848)
Q Consensus 604 ------------------------~~------------------~~~l~g~-----~~g~~g~~~~~~l~---------- 626 (848)
.. .+...+. .|+-........|+
T Consensus 135 ~~~r~~~~~~~~~~i~g~l~p~~~~~L~~~y~Gd~~~~~V~r~~~S~~~r~GI~~f~P~D~~~qd~s~LtG~vd~~kl~~ 214 (358)
T PF08298_consen 135 KELRREFEDELGIRIEGELCPWCRKRLLEEYGGDIEKFRVERLYFSERDRVGIGTFEPGDEKNQDISDLTGSVDIRKLAE 214 (358)
T ss_pred HhHHHHHHHHhCcccCCCcCHHHHHHHHHHhCCCccEEEEEEEccceecceeEEEECCCCCCCcchhhhhhHHHHHHHhh
Confidence 00 0000000 00000000001111
Q ss_pred ------------HHHHcCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCchhhhccCcc
Q 003094 627 ------------EAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRR 694 (848)
Q Consensus 627 ------------~~~~~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~i~~~~~~ 694 (848)
+.+..+.+|++=|=|+-|.+.+++..|+.+.++|.+...++-....-+.+||+.||...-
T Consensus 215 ~s~~dp~af~~~G~l~~aNrGi~ef~E~~K~~~~~L~~LL~~tqEg~ik~~~~~~~i~~D~liiAhsNe~E~-------- 286 (358)
T PF08298_consen 215 YSESDPRAFSYSGELNRANRGIMEFVEMLKAPIEFLHPLLTATQEGNIKVDEDFGMIPFDELIIAHSNEEEY-------- 286 (358)
T ss_pred hccCCCeeEeeccHHHHhhchhHHHHHHhcCcHHHHHHHhcchhcCceecCCcccccccceeEEecCCHHHH--------
Confidence 122233345555567778889999999999999998863333333457899999982110
Q ss_pred cccccCCCcccccHHHHHHHHHHHHH-hhcChhhhhccCeEEEcCCC-CHHHHHHHHHHHHHHHHHHHhcCCCeEeecHH
Q 003094 695 IGFDLDYDEKDSSYNRIKSLVTEELK-QYFRPEFLNRLDEMIVFRQL-TKLEVKEIADIMLKEVFDRLKTKDIELQVTER 772 (848)
Q Consensus 695 ~~f~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~ll~R~d~~i~f~~l-~~~el~~I~~~~l~~~~~~~~~~~~~l~i~~~ 772 (848)
. .+. ....++|.+|+ .+|.++.. +..+=.+|-+..+.+- .-...++.|.
T Consensus 287 --------------~--------~f~~~~~~eAf~DRi-~~I~VPY~L~~s~E~kIY~k~~~~s------~l~~~h~aP~ 337 (358)
T PF08298_consen 287 --------------N--------KFKNNKNNEAFKDRI-EVIKVPYCLRVSEEVKIYEKLIGKS------DLRDAHIAPH 337 (358)
T ss_pred --------------H--------HHhccccchhhhhhe-EEEeccccCCHHHHHHHHHHHhhhc------cccccccCch
Confidence 0 010 11347899999 88888764 3344455666555331 0124567888
Q ss_pred HHHHHHH
Q 003094 773 FRERVVE 779 (848)
Q Consensus 773 a~~~l~~ 779 (848)
+++.++.
T Consensus 338 ~L~~aA~ 344 (358)
T PF08298_consen 338 TLEMAAR 344 (358)
T ss_pred HHHHHHH
Confidence 8777665
No 498
>PRK06921 hypothetical protein; Provisional
Probab=98.03 E-value=5.8e-06 Score=87.51 Aligned_cols=102 Identities=18% Similarity=0.226 Sum_probs=60.9
Q ss_pred eEEEeecCCcchHHHHHHHHHHHhcCC-CCceEEecccccccccchhcccCCCCCCcccccccchhHHHHcCCCeEEEEc
Q 003094 562 ASFIFSGPTGVGKSELAKALAAYYFGS-EEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFD 640 (848)
Q Consensus 562 ~~lLl~Gp~GtGKT~lA~~la~~l~~~-~~~~i~i~~~~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~Vl~lD 640 (848)
.+++|+||||+|||+|+.+|++.+... +..++.+...++... +... + .........+.++ .+|+||
T Consensus 118 ~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~-----l~~~---~---~~~~~~~~~~~~~--dlLiID 184 (266)
T PRK06921 118 NSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGD-----LKDD---F---DLLEAKLNRMKKV--EVLFID 184 (266)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHH-----HHHH---H---HHHHHHHHHhcCC--CEEEEe
Confidence 459999999999999999999988654 555555555443221 1000 0 0001122233333 499999
Q ss_pred CCCc-------CChHHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCch
Q 003094 641 EIEK-------AHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSS 686 (848)
Q Consensus 641 Eid~-------l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~ 686 (848)
|++. ++...++.|..+++.-.- .+.-+|+|||....
T Consensus 185 Dl~~~~~g~e~~t~~~~~~lf~iin~R~~----------~~k~tIitsn~~~~ 227 (266)
T PRK06921 185 DLFKPVNGKPRATEWQIEQMYSVLNYRYL----------NHKPILISSELTID 227 (266)
T ss_pred ccccccCCCccCCHHHHHHHHHHHHHHHH----------CCCCEEEECCCCHH
Confidence 9944 445556677777764210 11236789986554
No 499
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.02 E-value=0.00018 Score=80.10 Aligned_cols=63 Identities=16% Similarity=0.275 Sum_probs=46.5
Q ss_pred HHHHHHHHhhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHh
Q 003094 521 RLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYY 585 (848)
Q Consensus 521 ~l~~l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l 585 (848)
.++++++.-.+++--+..-+..|..++.... ...|+.+-..+|++||+||||||..+.|++.+
T Consensus 72 W~eKy~P~t~eeLAVHkkKI~eVk~WL~~~~--~~~~~l~~~iLLltGPsGcGKSTtvkvLskel 134 (634)
T KOG1970|consen 72 WVEKYKPRTLEELAVHKKKISEVKQWLKQVA--EFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL 134 (634)
T ss_pred hHHhcCcccHHHHhhhHHhHHHHHHHHHHHH--HhccCCCceEEEEeCCCCCCchhHHHHHHHhh
Confidence 3556777777777777777888888887221 22233333468899999999999999999997
No 500
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=98.02 E-value=0.0001 Score=83.03 Aligned_cols=183 Identities=15% Similarity=0.195 Sum_probs=104.9
Q ss_pred CCCCccCChHHHHHHHHHhcc------------CCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCC----CCCCCceEEE
Q 003094 195 KLDPVVGRQPQIERVVQILGR------------RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVP----DTIEGKKVIT 258 (848)
Q Consensus 195 ~ld~iiG~~~~~~~l~~~l~~------------~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~----~~l~~~~v~~ 258 (848)
-+..+.|++.++.-|.-.|.. +.--|+|++|.||+||+-+.++.+..+..+-+. ....|..+-.
T Consensus 343 l~PsIyGhe~VK~GilL~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYtsGkaSSaAGLTaaV 422 (764)
T KOG0480|consen 343 LFPSIYGHELVKAGILLSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYTSGKASSAAGLTAAV 422 (764)
T ss_pred hCccccchHHHHhhHHHHHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEecCcccccccceEEE
Confidence 355688999888875544422 223589999999999999999998876432110 0001111100
Q ss_pred EeCCcccccccccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcC---------------
Q 003094 259 LDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR--------------- 323 (848)
Q Consensus 259 ~~~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~--------------- 323 (848)
+. ....|++.-.. ..+--++.+|-.|||+|.+-.. -+-.+...||.
T Consensus 423 vk-------D~esgdf~iEA----GALmLADnGICCIDEFDKMd~~--------dqvAihEAMEQQtISIaKAGv~aTLn 483 (764)
T KOG0480|consen 423 VK-------DEESGDFTIEA----GALMLADNGICCIDEFDKMDVK--------DQVAIHEAMEQQTISIAKAGVVATLN 483 (764)
T ss_pred Ee-------cCCCCceeeec----CcEEEccCceEEechhcccChH--------hHHHHHHHHHhheehheecceEEeec
Confidence 00 00111111000 0011134569999999998321 23344555542
Q ss_pred CceEEEEeeChH--------HHHhhhhcChhhhcccC--CCcCCCCCHHHHHHHHHHHHHHHhh-----hhcCCCChHHH
Q 003094 324 GELQCIGATTLD--------EYRKHIEKDPALERRFQ--PVKVPEPSVDETIQILKGLRERYEI-----HHKLRYTDEAL 388 (848)
Q Consensus 324 ~~v~vI~atn~~--------~~~~~~~~d~al~~Rf~--~i~~~~p~~~e~~~Il~~~~~~~~~-----~~~~~~s~~~l 388 (848)
.+.-||+++|+. .+..-+.+++++.+||+ .|.++.|++..-..|-+.+++.-.. .....++-+.+
T Consensus 484 ARtSIlAAANPv~GhYdR~ktl~eNi~msApimSRFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~~~~~~~~~~~e~v 563 (764)
T KOG0480|consen 484 ARTSILAAANPVGGHYDRKKTLRENINMSAPIMSRFDLFFILLDDCNEVVDYAIARHILDLHRGIDDATERVCVYTLEQV 563 (764)
T ss_pred chhhhhhhcCCcCCccccccchhhhcCCCchhhhhhcEEEEEecCCchHHHHHHHHHHHHHhccccccccccccccHHHH
Confidence 234678888863 33345678899999998 6788999998877777776653110 00113455555
Q ss_pred HHHHhhhh
Q 003094 389 VSAAQLSY 396 (848)
Q Consensus 389 ~~l~~~s~ 396 (848)
.....+++
T Consensus 564 rkYi~yAR 571 (764)
T KOG0480|consen 564 RKYIRYAR 571 (764)
T ss_pred HHHHHHHH
Confidence 55555554
Done!