Query 003094
Match_columns 848
No_of_seqs 526 out of 4636
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 13:06:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003094.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003094hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qvr_A CLPB protein; coiled co 100.0 1E-82 3.5E-87 781.6 69.6 732 90-833 1-849 (854)
2 3pxi_A Negative regulator of g 100.0 7.8E-81 2.7E-85 757.5 57.5 676 94-833 79-754 (758)
3 1r6b_X CLPA protein; AAA+, N-t 100.0 2.1E-77 7.3E-82 728.8 63.5 663 94-833 79-747 (758)
4 3pxg_A Negative regulator of g 100.0 1.2E-45 4.1E-50 422.5 30.6 390 94-508 79-468 (468)
5 3cf2_A TER ATPase, transitiona 100.0 2.4E-42 8.1E-47 409.7 19.0 459 194-808 201-704 (806)
6 4fcw_A Chaperone protein CLPB; 100.0 1.3E-34 4.4E-39 314.8 33.2 304 518-832 4-307 (311)
7 1ypw_A Transitional endoplasmi 100.0 3.4E-33 1.2E-37 338.2 10.3 459 192-806 199-702 (806)
8 3hws_A ATP-dependent CLP prote 99.9 1.3E-27 4.4E-32 265.3 12.3 270 523-806 7-326 (363)
9 4b4t_J 26S protease regulatory 99.9 1E-24 3.6E-29 238.4 23.2 219 193-440 144-389 (405)
10 1um8_A ATP-dependent CLP prote 99.9 1.4E-24 4.8E-29 242.0 20.8 281 522-821 12-354 (376)
11 4b4t_I 26S protease regulatory 99.9 2.7E-24 9.4E-29 235.3 20.8 198 194-419 179-403 (437)
12 4b4t_H 26S protease regulatory 99.9 1.5E-23 5.2E-28 231.7 23.6 200 194-420 206-431 (467)
13 4b4t_M 26S protease regulatory 99.9 8.9E-24 3.1E-28 234.8 21.4 197 193-416 177-399 (434)
14 1g41_A Heat shock protein HSLU 99.9 3.4E-24 1.1E-28 238.6 17.7 161 626-823 242-424 (444)
15 4b4t_L 26S protease subunit RP 99.9 1.7E-23 5.7E-28 232.8 21.8 199 194-419 178-402 (437)
16 4b4t_K 26S protease regulatory 99.9 9E-23 3.1E-27 226.7 23.4 195 194-416 169-391 (428)
17 1ofh_A ATP-dependent HSL prote 99.9 4.8E-22 1.6E-26 215.2 22.5 251 523-824 7-291 (310)
18 1ojl_A Transcriptional regulat 99.9 2.3E-22 8E-27 216.6 18.9 228 531-800 2-233 (304)
19 1ny5_A Transcriptional regulat 99.9 3.3E-21 1.1E-25 214.7 26.5 228 531-800 137-368 (387)
20 2bjv_A PSP operon transcriptio 99.9 1.1E-21 3.7E-26 207.8 18.9 230 530-800 5-238 (265)
21 1jbk_A CLPB protein; beta barr 99.9 4.4E-22 1.5E-26 199.0 12.5 192 177-368 2-194 (195)
22 3pxg_A Negative regulator of g 99.9 2E-20 6.8E-25 213.7 25.4 173 529-779 178-359 (468)
23 3eie_A Vacuolar protein sortin 99.9 7.3E-21 2.5E-25 207.2 19.9 202 190-417 11-233 (322)
24 3dzd_A Transcriptional regulat 99.9 8E-21 2.7E-25 209.9 18.3 226 532-800 130-359 (368)
25 1xwi_A SKD1 protein; VPS4B, AA 99.9 2.2E-20 7.5E-25 203.0 21.4 200 193-417 8-228 (322)
26 2p65_A Hypothetical protein PF 99.8 3.4E-21 1.2E-25 191.7 13.5 184 177-360 2-187 (187)
27 2qp9_X Vacuolar protein sortin 99.8 2.5E-20 8.6E-25 205.4 20.2 207 186-418 40-267 (355)
28 3m6a_A ATP-dependent protease 99.8 2.8E-20 9.6E-25 215.9 19.6 258 500-806 51-319 (543)
29 4b4t_J 26S protease regulatory 99.8 3.1E-20 1.1E-24 203.1 17.5 201 527-803 144-370 (405)
30 3vfd_A Spastin; ATPase, microt 99.8 6.3E-20 2.2E-24 205.2 20.3 206 185-416 103-330 (389)
31 3syl_A Protein CBBX; photosynt 99.8 7.4E-20 2.5E-24 198.1 19.1 222 522-808 22-268 (309)
32 3d8b_A Fidgetin-like protein 1 99.8 2.1E-19 7.1E-24 198.4 22.1 206 185-416 72-299 (357)
33 2c9o_A RUVB-like 1; hexameric 99.8 7.2E-21 2.5E-25 217.0 10.2 167 187-369 26-236 (456)
34 3cf2_A TER ATPase, transitiona 99.8 5.3E-21 1.8E-25 227.1 7.6 198 194-418 474-697 (806)
35 3b9p_A CG5977-PA, isoform A; A 99.8 6.2E-19 2.1E-23 189.7 21.6 205 186-416 10-237 (297)
36 2zan_A Vacuolar protein sortin 99.8 1.8E-19 6.2E-24 204.4 17.7 204 189-417 126-350 (444)
37 3pxi_A Negative regulator of g 99.8 1.6E-18 5.6E-23 210.2 26.8 174 529-780 178-360 (758)
38 4b4t_I 26S protease regulatory 99.8 1.2E-19 4.1E-24 198.7 15.0 199 529-803 180-404 (437)
39 4b4t_H 26S protease regulatory 99.8 4E-19 1.4E-23 196.5 17.3 199 529-803 207-431 (467)
40 4b4t_M 26S protease regulatory 99.8 1.8E-19 6E-24 200.3 14.4 199 529-803 179-403 (434)
41 3hu3_A Transitional endoplasmi 99.8 8.1E-19 2.8E-23 200.1 20.0 205 190-421 197-424 (489)
42 3h4m_A Proteasome-activating n 99.8 2.5E-18 8.7E-23 183.8 22.5 203 193-422 13-241 (285)
43 4b4t_L 26S protease subunit RP 99.8 6.1E-19 2.1E-23 196.2 17.2 199 529-803 179-403 (437)
44 3cf0_A Transitional endoplasmi 99.8 4.6E-19 1.6E-23 191.0 14.6 200 192-418 10-235 (301)
45 1lv7_A FTSH; alpha/beta domain 99.8 4E-18 1.4E-22 179.4 19.8 201 189-417 4-230 (257)
46 2qz4_A Paraplegin; AAA+, SPG7, 99.8 4.9E-18 1.7E-22 179.1 20.4 200 194-419 3-229 (262)
47 4b4t_K 26S protease regulatory 99.8 1.2E-18 4.1E-23 193.6 16.1 199 528-803 169-395 (428)
48 3eie_A Vacuolar protein sortin 99.8 4.4E-18 1.5E-22 185.1 18.7 209 530-808 17-241 (322)
49 3pfi_A Holliday junction ATP-d 99.8 7.9E-18 2.7E-22 184.6 20.3 202 525-800 23-232 (338)
50 2ce7_A Cell division protein F 99.8 9.1E-18 3.1E-22 189.7 21.2 199 194-420 13-237 (476)
51 3syl_A Protein CBBX; photosynt 99.8 1.1E-17 3.7E-22 181.1 19.4 210 196-417 29-260 (309)
52 3pvs_A Replication-associated 99.8 3.1E-18 1.1E-22 193.4 15.7 199 185-419 14-222 (447)
53 1xwi_A SKD1 protein; VPS4B, AA 99.8 2.5E-17 8.6E-22 178.9 21.8 211 529-808 10-236 (322)
54 4akg_A Glutathione S-transfera 99.8 1.2E-16 4.2E-21 210.1 32.5 452 217-755 1266-1791(2695)
55 2qp9_X Vacuolar protein sortin 99.7 1.9E-17 6.4E-22 182.4 19.0 210 528-807 48-273 (355)
56 3pfi_A Holliday junction ATP-d 99.7 9.7E-17 3.3E-21 175.9 23.2 193 184-419 16-234 (338)
57 2zan_A Vacuolar protein sortin 99.7 1E-16 3.5E-21 181.7 21.5 211 529-808 132-358 (444)
58 3u61_B DNA polymerase accessor 99.7 1.7E-16 6E-21 172.8 22.4 197 183-416 12-220 (324)
59 2x8a_A Nuclear valosin-contain 99.7 5.7E-17 2E-21 171.7 16.3 200 194-418 7-232 (274)
60 3cf0_A Transitional endoplasmi 99.7 1.2E-16 4.3E-21 171.9 17.8 206 530-809 14-243 (301)
61 1hqc_A RUVB; extended AAA-ATPa 99.7 2.6E-16 8.9E-21 171.3 19.3 196 529-798 10-214 (324)
62 3vfd_A Spastin; ATPase, microt 99.7 1.3E-16 4.6E-21 178.1 16.7 203 529-800 113-331 (389)
63 3d8b_A Fidgetin-like protein 1 99.7 3E-16 1E-20 173.1 18.4 205 530-803 83-303 (357)
64 2r62_A Cell division protease 99.7 3.6E-18 1.2E-22 180.9 2.7 199 193-418 7-232 (268)
65 2chg_A Replication factor C sm 99.7 6.2E-16 2.1E-20 157.9 18.8 195 186-416 6-208 (226)
66 3b9p_A CG5977-PA, isoform A; A 99.7 4.5E-16 1.6E-20 167.3 17.6 205 530-802 20-240 (297)
67 2qz4_A Paraplegin; AAA+, SPG7, 99.7 1.2E-15 4.2E-20 160.6 20.0 201 530-801 5-228 (262)
68 2chq_A Replication factor C sm 99.7 3.7E-16 1.3E-20 169.5 15.3 199 186-416 6-208 (319)
69 3uk6_A RUVB-like 2; hexameric 99.7 2.1E-15 7.2E-20 167.2 21.5 211 185-420 31-311 (368)
70 1hqc_A RUVB; extended AAA-ATPa 99.7 2.4E-15 8.3E-20 163.6 21.6 184 189-416 4-215 (324)
71 3te6_A Regulatory protein SIR3 99.7 3E-16 1E-20 167.8 14.0 211 199-420 22-287 (318)
72 2dhr_A FTSH; AAA+ protein, hex 99.7 2.8E-16 9.7E-21 178.6 14.3 200 192-419 26-251 (499)
73 3uk6_A RUVB-like 2; hexameric 99.7 5.7E-16 1.9E-20 171.8 16.0 219 530-802 43-310 (368)
74 3pvs_A Replication-associated 99.7 1.9E-16 6.5E-21 178.9 12.1 194 525-800 20-220 (447)
75 1iqp_A RFCS; clamp loader, ext 99.7 7.3E-16 2.5E-20 167.7 16.4 205 180-416 8-216 (327)
76 3t15_A Ribulose bisphosphate c 99.7 2.6E-16 8.9E-21 168.5 12.2 165 536-754 12-199 (293)
77 3u61_B DNA polymerase accessor 99.7 1.1E-15 3.6E-20 166.6 16.6 197 522-798 17-219 (324)
78 1sxj_B Activator 1 37 kDa subu 99.7 1.2E-15 4.1E-20 165.7 16.9 195 186-416 10-213 (323)
79 1ixz_A ATP-dependent metallopr 99.7 1.4E-15 4.8E-20 159.5 16.8 199 193-419 12-236 (254)
80 1ofh_A ATP-dependent HSL prote 99.7 1.9E-15 6.7E-20 163.1 18.3 211 197-419 15-273 (310)
81 3vkg_A Dynein heavy chain, cyt 99.7 3.4E-15 1.2E-19 197.1 24.0 445 217-755 1303-1828(3245)
82 1sxj_D Activator 1 41 kDa subu 99.6 1.4E-15 4.9E-20 167.4 17.5 205 183-418 23-241 (353)
83 1lv7_A FTSH; alpha/beta domain 99.6 2.3E-15 8E-20 158.2 17.7 202 529-803 10-233 (257)
84 3t15_A Ribulose bisphosphate c 99.6 5E-16 1.7E-20 166.3 12.3 158 216-401 34-218 (293)
85 3n70_A Transport activator; si 99.6 4.1E-16 1.4E-20 148.8 9.9 143 532-741 2-145 (145)
86 2ce7_A Cell division protein F 99.6 2.8E-15 9.7E-20 169.4 18.2 196 530-802 15-236 (476)
87 3h4m_A Proteasome-activating n 99.6 2.7E-15 9.2E-20 160.2 16.2 200 530-802 16-238 (285)
88 2r44_A Uncharacterized protein 99.6 5.6E-15 1.9E-19 161.3 18.5 207 520-780 16-238 (331)
89 1ypw_A Transitional endoplasmi 99.6 7.3E-17 2.5E-21 195.4 3.5 199 194-419 474-698 (806)
90 1g8p_A Magnesium-chelatase 38 99.6 4E-15 1.4E-19 163.7 17.1 222 530-798 23-298 (350)
91 3hu3_A Transitional endoplasmi 99.6 1.3E-15 4.3E-20 173.8 13.4 200 529-804 202-424 (489)
92 1iy2_A ATP-dependent metallopr 99.6 5.3E-15 1.8E-19 157.4 17.2 200 192-419 35-260 (278)
93 2r44_A Uncharacterized protein 99.6 5.1E-15 1.8E-19 161.6 17.2 169 183-373 13-199 (331)
94 1njg_A DNA polymerase III subu 99.6 8.3E-15 2.8E-19 151.6 17.8 200 186-416 12-232 (250)
95 4akg_A Glutathione S-transfera 99.6 7E-14 2.4E-18 184.3 30.6 360 217-681 644-1052(2695)
96 1sxj_A Activator 1 95 kDa subu 99.6 6.4E-16 2.2E-20 178.8 10.1 198 185-415 27-255 (516)
97 1jr3_A DNA polymerase III subu 99.6 1.9E-14 6.5E-19 159.7 20.8 200 186-416 5-225 (373)
98 1in4_A RUVB, holliday junction 99.6 5.9E-14 2E-18 153.3 24.2 193 186-421 14-232 (334)
99 3k1j_A LON protease, ATP-depen 99.6 1.4E-15 4.8E-20 179.2 11.3 228 525-798 35-351 (604)
100 2chg_A Replication factor C sm 99.6 1.4E-14 4.7E-19 147.9 16.7 189 527-799 13-208 (226)
101 1sxj_C Activator 1 40 kDa subu 99.6 7.7E-15 2.6E-19 160.9 15.7 196 184-415 12-215 (340)
102 3nbx_X ATPase RAVA; AAA+ ATPas 99.6 9.7E-15 3.3E-19 166.2 16.8 232 520-810 11-270 (500)
103 1sxj_E Activator 1 40 kDa subu 99.6 9.3E-15 3.2E-19 161.1 15.9 204 186-418 3-243 (354)
104 2chq_A Replication factor C sm 99.6 9.1E-15 3.1E-19 158.4 15.4 187 528-798 14-207 (319)
105 1iqp_A RFCS; clamp loader, ext 99.6 9.4E-15 3.2E-19 158.9 15.4 189 525-797 19-214 (327)
106 1d2n_A N-ethylmaleimide-sensit 99.6 1.8E-15 6E-20 160.5 9.1 203 528-800 30-247 (272)
107 2r62_A Cell division protease 99.6 1.8E-15 6.2E-20 160.0 7.3 198 530-800 10-231 (268)
108 1sxj_D Activator 1 41 kDa subu 99.6 4.3E-15 1.5E-19 163.6 10.5 206 523-798 29-238 (353)
109 1d2n_A N-ethylmaleimide-sensit 99.6 3E-14 1E-18 151.0 16.3 195 196-416 32-246 (272)
110 2v1u_A Cell division control p 99.6 6.4E-14 2.2E-18 156.0 19.1 214 196-420 18-257 (387)
111 4fcw_A Chaperone protein CLPB; 99.5 9.6E-14 3.3E-18 150.0 19.1 182 197-395 17-257 (311)
112 3te6_A Regulatory protein SIR3 99.5 1.4E-14 4.6E-19 155.1 11.4 241 532-822 21-305 (318)
113 3co5_A Putative two-component 99.5 4.1E-15 1.4E-19 141.4 6.5 138 532-741 5-143 (143)
114 3hws_A ATP-dependent CLP prote 99.5 4.2E-14 1.4E-18 156.4 14.9 186 199-395 17-301 (363)
115 3m6a_A ATP-dependent protease 99.5 1.2E-14 4.1E-19 168.6 10.5 179 197-395 81-295 (543)
116 1sxj_B Activator 1 37 kDa subu 99.5 3.6E-14 1.2E-18 154.0 13.5 190 525-799 15-213 (323)
117 1um8_A ATP-dependent CLP prote 99.5 2.4E-13 8.2E-18 151.1 20.2 188 198-396 22-319 (376)
118 3bos_A Putative DNA replicatio 99.5 1E-13 3.5E-18 143.5 16.0 198 188-417 18-222 (242)
119 1njg_A DNA polymerase III subu 99.5 1.6E-13 5.3E-18 141.9 17.0 200 528-798 20-231 (250)
120 1sxj_C Activator 1 40 kDa subu 99.5 8.9E-14 3.1E-18 152.3 15.6 177 523-780 17-200 (340)
121 1jr3_A DNA polymerase III subu 99.5 8.2E-14 2.8E-18 154.5 15.5 204 525-798 10-224 (373)
122 2dhr_A FTSH; AAA+ protein, hex 99.5 4.4E-14 1.5E-18 160.6 13.4 199 529-801 29-250 (499)
123 2qby_B CDC6 homolog 3, cell di 99.5 3.9E-13 1.3E-17 149.7 20.7 217 187-420 13-253 (384)
124 1g8p_A Magnesium-chelatase 38 99.5 1.6E-13 5.5E-18 150.8 16.9 164 192-371 19-231 (350)
125 1a5t_A Delta prime, HOLB; zinc 99.5 2.2E-13 7.6E-18 148.6 16.8 178 533-780 4-193 (334)
126 2bjv_A PSP operon transcriptio 99.5 1.2E-13 4.2E-18 145.6 14.1 184 195-393 4-219 (265)
127 2x8a_A Nuclear valosin-contain 99.5 2E-13 6.8E-18 144.4 15.7 209 528-807 7-238 (274)
128 1l8q_A Chromosomal replication 99.5 2.2E-13 7.6E-18 148.2 15.9 196 194-416 8-212 (324)
129 1fnn_A CDC6P, cell division co 99.5 1.3E-12 4.3E-17 145.7 22.1 206 197-420 17-255 (389)
130 1l8q_A Chromosomal replication 99.5 8.6E-14 2.9E-18 151.4 12.3 173 562-801 38-214 (324)
131 2qby_A CDC6 homolog 1, cell di 99.5 5.8E-13 2E-17 148.1 19.2 210 196-420 19-253 (386)
132 2z4s_A Chromosomal replication 99.5 3.1E-13 1.1E-17 152.8 16.4 206 195-421 103-315 (440)
133 1sxj_E Activator 1 40 kDa subu 99.5 1.4E-13 4.6E-18 151.7 13.1 200 526-796 9-238 (354)
134 2qby_B CDC6 homolog 3, cell di 99.5 2.8E-13 9.4E-18 150.9 15.5 213 529-799 18-249 (384)
135 3f9v_A Minichromosome maintena 99.5 1.1E-14 3.9E-19 170.2 3.8 235 522-796 286-561 (595)
136 1sxj_A Activator 1 95 kDa subu 99.5 2.2E-13 7.5E-18 157.6 13.8 209 522-797 30-254 (516)
137 1ixz_A ATP-dependent metallopr 99.5 4.6E-13 1.6E-17 140.3 14.7 196 530-802 15-236 (254)
138 3vkg_A Dynein heavy chain, cyt 99.4 2.1E-11 7.1E-16 161.6 32.5 378 218-681 604-1034(3245)
139 1ojl_A Transcriptional regulat 99.4 2.2E-13 7.6E-18 146.4 11.0 179 197-394 2-215 (304)
140 3bos_A Putative DNA replicatio 99.4 1.4E-12 4.8E-17 134.8 16.7 168 562-802 53-224 (242)
141 1fnn_A CDC6P, cell division co 99.4 1.3E-12 4.3E-17 145.7 17.5 220 531-800 17-252 (389)
142 1r6b_X CLPA protein; AAA+, N-t 99.4 1.8E-12 6E-17 157.5 19.7 179 197-395 458-694 (758)
143 1iy2_A ATP-dependent metallopr 99.4 1.2E-12 4.1E-17 139.1 14.9 197 529-802 38-260 (278)
144 1in4_A RUVB, holliday junction 99.4 9.7E-12 3.3E-16 135.6 22.0 195 530-798 24-226 (334)
145 2gno_A DNA polymerase III, gam 99.4 9.4E-13 3.2E-17 141.1 13.6 145 535-753 1-152 (305)
146 2v1u_A Cell division control p 99.4 6.9E-13 2.3E-17 147.6 11.0 220 530-800 18-254 (387)
147 1jbk_A CLPB protein; beta barr 99.4 7.6E-13 2.6E-17 131.5 9.1 161 525-749 16-194 (195)
148 2z4s_A Chromosomal replication 99.4 9.9E-13 3.4E-17 148.7 10.9 177 562-802 131-313 (440)
149 1a5t_A Delta prime, HOLB; zinc 99.4 4.4E-12 1.5E-16 138.4 15.1 181 202-415 7-208 (334)
150 1qvr_A CLPB protein; coiled co 99.4 9E-12 3.1E-16 152.7 18.8 183 197-396 558-799 (854)
151 3n70_A Transport activator; si 99.3 2.5E-12 8.4E-17 122.4 7.3 134 198-358 2-143 (145)
152 2p65_A Hypothetical protein PF 99.3 7.8E-12 2.7E-16 123.6 10.4 154 524-741 15-187 (187)
153 3k1j_A LON protease, ATP-depen 99.3 7.6E-11 2.6E-15 138.8 19.8 214 188-421 32-357 (604)
154 2qby_A CDC6 homolog 1, cell di 99.3 9.7E-12 3.3E-16 138.1 11.3 215 530-799 19-249 (386)
155 3nbx_X ATPase RAVA; AAA+ ATPas 99.2 2.7E-11 9.3E-16 137.8 12.2 203 198-422 23-269 (500)
156 3co5_A Putative two-component 99.2 1.6E-12 5.5E-17 123.4 1.6 129 198-358 5-141 (143)
157 2gno_A DNA polymerase III, gam 99.2 9E-11 3.1E-15 125.7 13.6 146 201-372 1-152 (305)
158 3f8t_A Predicted ATPase involv 99.2 1.1E-10 3.8E-15 128.6 14.4 214 522-779 205-425 (506)
159 3zri_A CLPB protein, CLPV; cha 99.2 4.6E-11 1.6E-15 116.0 10.1 78 84-162 14-91 (171)
160 1w5s_A Origin recognition comp 99.2 4.7E-10 1.6E-14 125.8 19.1 217 196-419 21-273 (412)
161 3fh2_A Probable ATP-dependent 99.2 5.2E-11 1.8E-15 113.3 9.1 73 90-162 2-74 (146)
162 1khy_A CLPB protein; alpha hel 99.1 6E-11 2.1E-15 113.2 7.8 74 90-163 1-74 (148)
163 2y1q_A CLPC N-domain, negative 99.1 5.7E-11 1.9E-15 113.6 7.2 73 90-162 1-73 (150)
164 3f9v_A Minichromosome maintena 99.1 1.7E-11 5.9E-16 143.3 2.4 157 197-373 295-491 (595)
165 2c9o_A RUVB-like 1; hexameric 99.0 1.7E-10 5.9E-15 131.2 7.5 101 528-647 34-140 (456)
166 3fes_A ATP-dependent CLP endop 99.0 2.3E-10 7.8E-15 108.6 6.8 72 91-162 4-75 (145)
167 1g41_A Heat shock protein HSLU 99.0 9.8E-11 3.4E-15 130.3 2.8 122 523-659 7-141 (444)
168 2qen_A Walker-type ATPase; unk 99.0 7.2E-09 2.5E-13 113.2 17.7 183 197-398 12-238 (350)
169 1w5s_A Origin recognition comp 98.9 4.4E-09 1.5E-13 117.9 13.0 219 530-797 21-268 (412)
170 3cmw_A Protein RECA, recombina 98.9 1.7E-09 5.9E-14 137.1 9.1 85 563-648 1084-1175(1706)
171 3dzd_A Transcriptional regulat 98.8 5.2E-08 1.8E-12 107.2 18.0 177 197-393 129-340 (368)
172 2fna_A Conserved hypothetical 98.8 6.4E-08 2.2E-12 105.9 17.9 179 196-398 12-242 (357)
173 1ny5_A Transcriptional regulat 98.8 8.7E-08 3E-12 106.3 18.6 179 196-393 136-349 (387)
174 3f8t_A Predicted ATPase involv 98.8 1.5E-08 5.1E-13 111.8 11.0 142 197-363 213-385 (506)
175 1jr3_D DNA polymerase III, del 98.7 1.8E-07 6.2E-12 102.1 16.3 165 562-799 19-189 (343)
176 2w58_A DNAI, primosome compone 98.7 1.8E-08 6.3E-13 101.1 6.7 104 187-301 15-127 (202)
177 3ec2_A DNA replication protein 98.7 3.7E-08 1.3E-12 96.9 8.3 104 562-686 39-145 (180)
178 1k6k_A ATP-dependent CLP prote 98.6 2.8E-08 9.5E-13 93.9 6.5 67 95-163 2-69 (143)
179 3cmu_A Protein RECA, recombina 98.6 3.8E-08 1.3E-12 126.3 7.6 84 563-647 1429-1519(2050)
180 2w58_A DNAI, primosome compone 98.6 4.1E-08 1.4E-12 98.5 5.7 104 562-686 55-161 (202)
181 2kjq_A DNAA-related protein; s 98.5 1.2E-07 4.1E-12 90.1 7.6 90 562-685 37-126 (149)
182 3ec2_A DNA replication protein 98.5 3.4E-08 1.2E-12 97.2 3.7 133 189-335 2-143 (180)
183 2kjq_A DNAA-related protein; s 98.5 1.7E-07 5.7E-12 89.1 6.8 106 217-352 35-140 (149)
184 3fh2_A Probable ATP-dependent 98.5 2.7E-07 9.3E-12 87.4 8.2 65 94-158 81-145 (146)
185 3fes_A ATP-dependent CLP endop 98.4 1.8E-07 6.3E-12 88.4 6.2 63 94-156 81-143 (145)
186 1u0j_A DNA replication protein 98.4 7.7E-07 2.6E-11 91.9 10.6 133 562-750 105-248 (267)
187 2qgz_A Helicase loader, putati 98.4 9.8E-08 3.3E-12 102.4 3.9 104 188-301 115-226 (308)
188 2y1q_A CLPC N-domain, negative 98.3 8.2E-07 2.8E-11 84.5 8.3 65 94-158 79-143 (150)
189 1tue_A Replication protein E1; 98.3 6.3E-07 2.2E-11 88.3 7.4 122 204-360 43-180 (212)
190 2qgz_A Helicase loader, putati 98.3 3.4E-07 1.2E-11 98.1 5.3 106 562-688 153-262 (308)
191 2qen_A Walker-type ATPase; unk 98.3 3E-06 1E-10 92.2 12.2 165 531-753 12-216 (350)
192 1jr3_D DNA polymerase III, del 98.3 1.3E-06 4.4E-11 95.3 8.9 168 213-415 13-188 (343)
193 2r2a_A Uncharacterized protein 98.3 6.6E-07 2.3E-11 89.2 5.5 133 220-360 7-154 (199)
194 1k6k_A ATP-dependent CLP prote 98.2 1.9E-06 6.4E-11 81.2 7.4 61 94-154 79-139 (143)
195 2fna_A Conserved hypothetical 98.2 8.5E-06 2.9E-10 88.8 12.2 167 531-754 13-223 (357)
196 1tue_A Replication protein E1; 98.1 2.3E-06 8E-11 84.3 5.4 97 562-685 59-158 (212)
197 2vhj_A Ntpase P4, P4; non- hyd 98.1 3.4E-06 1.2E-10 89.2 6.5 107 217-335 122-236 (331)
198 1khy_A CLPB protein; alpha hel 98.0 7.3E-06 2.5E-10 77.6 7.4 61 94-155 82-142 (148)
199 1z6t_A APAF-1, apoptotic prote 97.9 0.00012 4E-09 85.9 17.1 173 193-398 120-320 (591)
200 1u0j_A DNA replication protein 97.9 4.5E-05 1.5E-09 78.7 10.4 128 206-369 90-248 (267)
201 2orw_A Thymidine kinase; TMTK, 97.9 2.4E-05 8.2E-10 77.0 7.9 96 563-659 5-102 (184)
202 1ye8_A Protein THEP1, hypothet 97.8 6.4E-05 2.2E-09 73.5 9.6 24 220-243 2-25 (178)
203 2r2a_A Uncharacterized protein 97.8 4.5E-05 1.5E-09 75.8 8.4 81 563-645 7-99 (199)
204 3cmw_A Protein RECA, recombina 97.8 5E-05 1.7E-09 96.9 10.7 89 209-304 1070-1175(1706)
205 3upu_A ATP-dependent DNA helic 97.6 0.00016 5.5E-09 81.9 11.4 60 184-244 11-71 (459)
206 1ye8_A Protein THEP1, hypothet 97.6 0.00027 9.3E-09 68.9 10.0 23 563-585 2-24 (178)
207 2r8r_A Sensor protein; KDPD, P 97.5 0.00029 1E-08 70.6 9.8 153 561-748 6-172 (228)
208 3sfz_A APAF-1, apoptotic pepti 97.5 0.00065 2.2E-08 86.7 15.6 156 191-372 118-299 (1249)
209 2b8t_A Thymidine kinase; deoxy 97.5 0.00035 1.2E-08 70.6 9.9 98 562-659 13-115 (223)
210 2vhj_A Ntpase P4, P4; non- hyd 97.5 0.00015 5E-09 76.7 7.3 70 563-647 125-196 (331)
211 3cmu_A Protein RECA, recombina 97.4 0.00034 1.2E-08 90.3 11.3 88 209-303 1415-1519(2050)
212 3dm5_A SRP54, signal recogniti 97.4 0.0087 3E-07 66.4 20.0 77 218-301 100-194 (443)
213 2a5y_B CED-4; apoptosis; HET: 97.3 0.0007 2.4E-08 78.5 11.7 148 200-371 131-305 (549)
214 3upu_A ATP-dependent DNA helic 97.3 0.00047 1.6E-08 78.0 9.3 113 535-659 29-154 (459)
215 2orw_A Thymidine kinase; TMTK, 97.3 7.6E-05 2.6E-09 73.3 2.1 24 220-243 5-28 (184)
216 2cvh_A DNA repair and recombin 97.3 0.00053 1.8E-08 68.9 8.4 38 216-263 18-55 (220)
217 2w0m_A SSO2452; RECA, SSPF, un 97.2 0.00061 2.1E-08 69.0 8.5 112 216-335 21-168 (235)
218 3e1s_A Exodeoxyribonuclease V, 97.2 0.0049 1.7E-07 71.4 16.7 134 97-244 72-230 (574)
219 1n0w_A DNA repair protein RAD5 97.1 0.0019 6.5E-08 65.9 10.4 88 216-304 22-134 (243)
220 2b8t_A Thymidine kinase; deoxy 97.0 0.0012 4.2E-08 66.5 8.2 100 221-336 15-127 (223)
221 1xx6_A Thymidine kinase; NESG, 97.0 0.0011 3.8E-08 65.2 6.9 95 563-659 10-107 (191)
222 3zri_A CLPB protein, CLPV; cha 97.0 0.00063 2.2E-08 65.6 5.0 65 94-158 98-165 (171)
223 1vt4_I APAF-1 related killer D 96.9 0.0033 1.1E-07 76.1 12.0 43 199-241 130-173 (1221)
224 3jvv_A Twitching mobility prot 96.9 0.0011 3.9E-08 71.9 6.8 97 562-661 124-222 (356)
225 1xp8_A RECA protein, recombina 96.8 0.0043 1.5E-07 67.5 10.4 81 216-303 72-166 (366)
226 2dr3_A UPF0273 protein PH0284; 96.8 0.0032 1.1E-07 64.3 8.9 28 216-243 21-48 (247)
227 2r8r_A Sensor protein; KDPD, P 96.8 0.0066 2.3E-07 60.8 10.7 39 217-262 5-43 (228)
228 2a5y_B CED-4; apoptosis; HET: 96.7 0.0054 1.8E-07 71.0 11.5 44 534-583 131-174 (549)
229 3e1s_A Exodeoxyribonuclease V, 96.7 0.0018 6.3E-08 75.0 7.1 90 563-659 206-305 (574)
230 2ehv_A Hypothetical protein PH 96.6 0.0046 1.6E-07 63.3 9.1 25 216-240 28-52 (251)
231 2j9r_A Thymidine kinase; TK1, 96.6 0.005 1.7E-07 61.2 8.5 95 563-659 30-127 (214)
232 4a74_A DNA repair and recombin 96.6 0.0061 2.1E-07 61.4 9.3 27 217-243 24-50 (231)
233 3hr8_A Protein RECA; alpha and 96.5 0.0089 3.1E-07 64.6 10.8 88 209-303 49-153 (356)
234 1ex7_A Guanylate kinase; subst 96.5 0.0032 1.1E-07 61.6 6.6 25 219-243 2-26 (186)
235 2zr9_A Protein RECA, recombina 96.5 0.0032 1.1E-07 68.2 7.2 80 216-302 59-152 (349)
236 1z6t_A APAF-1, apoptotic prote 96.5 0.01 3.5E-07 69.2 12.1 46 531-583 124-169 (591)
237 1w4r_A Thymidine kinase; type 96.5 0.0043 1.5E-07 60.6 7.3 92 563-660 22-117 (195)
238 3lda_A DNA repair protein RAD5 96.5 0.0075 2.6E-07 66.4 10.2 115 216-333 176-326 (400)
239 3trf_A Shikimate kinase, SK; a 96.5 0.0011 3.8E-08 64.7 3.1 25 218-242 5-29 (185)
240 1pzn_A RAD51, DNA repair and r 96.5 0.019 6.4E-07 62.2 13.1 28 215-242 128-155 (349)
241 2z43_A DNA repair and recombin 96.5 0.0051 1.7E-07 66.0 8.5 87 216-303 105-217 (324)
242 1u94_A RECA protein, recombina 96.5 0.0053 1.8E-07 66.6 8.6 81 216-303 61-155 (356)
243 3lxw_A GTPase IMAP family memb 96.5 0.016 5.4E-07 59.5 11.6 25 217-241 20-44 (247)
244 1v5w_A DMC1, meiotic recombina 96.4 0.015 5E-07 62.9 11.8 95 209-304 111-234 (343)
245 2iut_A DNA translocase FTSK; n 96.4 0.025 8.4E-07 64.6 13.9 141 218-369 214-420 (574)
246 3dm5_A SRP54, signal recogniti 96.4 0.024 8.3E-07 62.8 13.3 87 561-647 100-196 (443)
247 2eyu_A Twitching motility prot 96.4 0.0056 1.9E-07 63.4 7.7 24 562-585 26-49 (261)
248 1qhx_A CPT, protein (chloramph 96.4 0.0025 8.4E-08 61.7 4.6 25 218-242 3-27 (178)
249 3vaa_A Shikimate kinase, SK; s 96.3 0.0017 5.9E-08 64.3 3.3 27 216-242 23-49 (199)
250 2fz4_A DNA repair protein RAD2 96.3 0.013 4.3E-07 59.8 9.9 36 204-242 97-132 (237)
251 1cr0_A DNA primase/helicase; R 96.3 0.018 6.3E-07 60.6 11.2 31 213-243 30-60 (296)
252 1nlf_A Regulatory protein REPA 96.3 0.019 6.4E-07 60.1 11.2 29 217-245 29-57 (279)
253 1qhx_A CPT, protein (chloramph 96.3 0.0021 7.1E-08 62.2 3.5 35 563-600 5-39 (178)
254 3trf_A Shikimate kinase, SK; a 96.2 0.0027 9.2E-08 61.9 4.2 30 563-595 7-36 (185)
255 3iij_A Coilin-interacting nucl 96.2 0.0028 9.5E-08 61.5 4.1 26 217-242 10-35 (180)
256 1gvn_B Zeta; postsegregational 96.2 0.0069 2.4E-07 63.7 7.5 36 562-600 34-69 (287)
257 2p5t_B PEZT; postsegregational 96.2 0.0087 3E-07 61.7 7.9 36 562-600 33-68 (253)
258 1y63_A LMAJ004144AAA protein; 96.2 0.0024 8.4E-08 62.3 3.5 26 216-241 8-33 (184)
259 3crm_A TRNA delta(2)-isopenten 96.1 0.011 3.8E-07 62.7 8.5 33 219-261 6-38 (323)
260 3kl4_A SRP54, signal recogniti 96.1 0.032 1.1E-06 61.8 12.5 38 218-262 97-134 (433)
261 2xxa_A Signal recognition part 96.1 0.073 2.5E-06 59.1 15.5 42 217-264 99-140 (433)
262 2ewv_A Twitching motility prot 96.1 0.01 3.5E-07 64.8 8.4 88 562-659 137-233 (372)
263 2fz4_A DNA repair protein RAD2 96.1 0.014 4.8E-07 59.4 8.7 93 564-658 111-217 (237)
264 3vaa_A Shikimate kinase, SK; s 96.1 0.0038 1.3E-07 61.8 4.2 29 563-594 27-55 (199)
265 2cdn_A Adenylate kinase; phosp 96.1 0.0045 1.5E-07 61.3 4.7 34 557-594 17-50 (201)
266 1zuh_A Shikimate kinase; alpha 96.0 0.0027 9.4E-08 60.8 3.0 26 217-242 6-31 (168)
267 2w0m_A SSO2452; RECA, SSPF, un 96.0 0.0065 2.2E-07 61.2 6.0 34 563-596 25-58 (235)
268 1via_A Shikimate kinase; struc 96.0 0.0034 1.2E-07 60.6 3.7 24 219-242 5-28 (175)
269 3kl4_A SRP54, signal recogniti 96.0 0.026 8.8E-07 62.6 11.1 40 561-600 97-136 (433)
270 1w36_D RECD, exodeoxyribonucle 96.0 0.012 4.2E-07 68.7 9.0 27 633-659 262-288 (608)
271 3hr8_A Protein RECA; alpha and 96.0 0.018 6E-07 62.3 9.5 84 563-647 63-153 (356)
272 2i3b_A HCR-ntpase, human cance 96.0 0.0026 9E-08 62.5 2.7 23 564-586 4-26 (189)
273 3kb2_A SPBC2 prophage-derived 96.0 0.0037 1.3E-07 59.9 3.8 23 220-242 3-25 (173)
274 3kb2_A SPBC2 prophage-derived 96.0 0.0047 1.6E-07 59.2 4.3 29 563-594 3-31 (173)
275 2iyv_A Shikimate kinase, SK; t 96.0 0.0036 1.2E-07 60.9 3.5 24 219-242 3-26 (184)
276 3jvv_A Twitching mobility prot 96.0 0.015 5.1E-07 63.0 8.7 103 216-335 121-231 (356)
277 3bh0_A DNAB-like replicative h 95.9 0.059 2E-06 57.3 13.3 39 216-261 66-104 (315)
278 3a8t_A Adenylate isopentenyltr 95.9 0.0072 2.5E-07 64.4 5.9 24 219-242 41-64 (339)
279 1kag_A SKI, shikimate kinase I 95.9 0.0059 2E-07 58.6 4.8 25 218-242 4-28 (173)
280 1g5t_A COB(I)alamin adenosyltr 95.9 0.047 1.6E-06 53.4 10.9 34 562-595 29-62 (196)
281 2ius_A DNA translocase FTSK; n 95.8 0.033 1.1E-06 63.0 11.1 72 291-369 299-374 (512)
282 1zuh_A Shikimate kinase; alpha 95.8 0.0054 1.9E-07 58.7 4.0 30 562-594 8-37 (168)
283 2zr9_A Protein RECA, recombina 95.8 0.014 4.7E-07 63.2 7.6 83 563-646 63-152 (349)
284 1via_A Shikimate kinase; struc 95.8 0.0048 1.7E-07 59.5 3.6 22 564-585 7-28 (175)
285 2cvh_A DNA repair and recombin 95.8 0.008 2.7E-07 60.1 5.4 34 563-599 22-55 (220)
286 1aky_A Adenylate kinase; ATP:A 95.8 0.0047 1.6E-07 62.1 3.6 26 217-242 3-28 (220)
287 1xp8_A RECA protein, recombina 95.8 0.016 5.3E-07 63.1 8.0 83 563-646 76-165 (366)
288 1w4r_A Thymidine kinase; type 95.8 0.008 2.7E-07 58.8 5.0 95 221-335 23-127 (195)
289 1nks_A Adenylate kinase; therm 95.8 0.0052 1.8E-07 60.0 3.7 38 563-600 3-40 (194)
290 2rhm_A Putative kinase; P-loop 95.8 0.0036 1.2E-07 61.3 2.5 25 218-242 5-29 (193)
291 2orv_A Thymidine kinase; TP4A 95.7 0.027 9.2E-07 56.5 8.8 92 563-659 21-114 (234)
292 1e6c_A Shikimate kinase; phosp 95.7 0.0057 2E-07 58.7 3.9 24 219-242 3-26 (173)
293 2ze6_A Isopentenyl transferase 95.7 0.0057 2E-07 63.1 3.9 23 220-242 3-25 (253)
294 2cdn_A Adenylate kinase; phosp 95.7 0.0055 1.9E-07 60.6 3.6 27 216-242 18-44 (201)
295 2iyv_A Shikimate kinase, SK; t 95.7 0.006 2.1E-07 59.3 3.8 28 564-594 5-32 (184)
296 2ze6_A Isopentenyl transferase 95.6 0.0069 2.4E-07 62.5 4.3 32 563-597 3-34 (253)
297 3lxx_A GTPase IMAP family memb 95.6 0.026 9E-07 57.3 8.6 25 217-241 28-52 (239)
298 2c95_A Adenylate kinase 1; tra 95.6 0.0054 1.9E-07 60.2 3.3 26 217-242 8-33 (196)
299 3e2i_A Thymidine kinase; Zn-bi 95.6 0.02 6.8E-07 56.8 7.3 95 564-660 31-128 (219)
300 1g5t_A COB(I)alamin adenosyltr 95.6 0.029 9.8E-07 54.9 8.3 109 217-335 27-163 (196)
301 2r6a_A DNAB helicase, replicat 95.6 0.031 1.1E-06 62.8 9.9 41 215-261 200-240 (454)
302 3iij_A Coilin-interacting nucl 95.6 0.0062 2.1E-07 59.0 3.5 23 563-585 13-35 (180)
303 3t61_A Gluconokinase; PSI-biol 95.6 0.0071 2.4E-07 59.9 4.0 25 218-242 18-42 (202)
304 2pt7_A CAG-ALFA; ATPase, prote 95.6 0.011 3.7E-07 63.6 5.7 91 563-659 173-263 (330)
305 2zts_A Putative uncharacterize 95.6 0.027 9.3E-07 57.3 8.6 110 216-332 28-179 (251)
306 3lw7_A Adenylate kinase relate 95.6 0.0057 1.9E-07 58.6 3.0 22 220-242 3-24 (179)
307 1kag_A SKI, shikimate kinase I 95.6 0.0065 2.2E-07 58.3 3.4 23 563-585 6-28 (173)
308 2iut_A DNA translocase FTSK; n 95.5 0.089 3.1E-06 60.0 13.2 38 562-599 215-256 (574)
309 2rhm_A Putative kinase; P-loop 95.5 0.0087 3E-07 58.5 4.4 29 563-594 7-35 (193)
310 2yvu_A Probable adenylyl-sulfa 95.5 0.0086 2.9E-07 58.4 4.3 29 216-244 11-39 (186)
311 4a74_A DNA repair and recombin 95.5 0.015 5E-07 58.6 6.1 23 563-585 27-49 (231)
312 1kht_A Adenylate kinase; phosp 95.5 0.0072 2.5E-07 58.9 3.7 36 563-598 5-40 (192)
313 2i1q_A DNA repair and recombin 95.5 0.032 1.1E-06 59.6 9.0 88 216-303 96-218 (322)
314 1knq_A Gluconate kinase; ALFA/ 95.5 0.013 4.3E-07 56.5 5.2 24 562-585 9-32 (175)
315 1aky_A Adenylate kinase; ATP:A 95.5 0.0087 3E-07 60.1 4.1 23 563-585 6-28 (220)
316 2ga8_A Hypothetical 39.9 kDa p 95.4 0.0091 3.1E-07 64.0 4.4 42 202-243 4-49 (359)
317 1w36_D RECD, exodeoxyribonucle 95.4 0.066 2.3E-06 62.5 12.1 37 204-243 153-189 (608)
318 3be4_A Adenylate kinase; malar 95.4 0.006 2.1E-07 61.3 2.8 25 218-242 5-29 (217)
319 1u94_A RECA protein, recombina 95.4 0.017 5.8E-07 62.6 6.6 84 563-647 65-155 (356)
320 1qf9_A UMP/CMP kinase, protein 95.4 0.0061 2.1E-07 59.5 2.8 25 218-242 6-30 (194)
321 1tev_A UMP-CMP kinase; ploop, 95.4 0.0064 2.2E-07 59.5 3.0 25 218-242 3-27 (196)
322 3tlx_A Adenylate kinase 2; str 95.4 0.0095 3.2E-07 61.0 4.3 26 217-242 28-53 (243)
323 1e6c_A Shikimate kinase; phosp 95.4 0.0081 2.8E-07 57.6 3.6 22 564-585 5-26 (173)
324 1y63_A LMAJ004144AAA protein; 95.4 0.0092 3.1E-07 58.2 4.0 35 563-601 12-46 (184)
325 3io5_A Recombination and repai 95.4 0.023 7.9E-07 59.8 7.2 84 562-646 29-124 (333)
326 2dr3_A UPF0273 protein PH0284; 95.4 0.021 7.1E-07 58.1 6.8 35 563-597 25-59 (247)
327 3exa_A TRNA delta(2)-isopenten 95.4 0.011 3.7E-07 62.3 4.6 23 220-242 5-27 (322)
328 3t61_A Gluconokinase; PSI-biol 95.4 0.01 3.5E-07 58.7 4.2 23 563-585 20-42 (202)
329 3eph_A TRNA isopentenyltransfe 95.4 0.019 6.3E-07 62.7 6.5 23 220-242 4-26 (409)
330 1xx6_A Thymidine kinase; NESG, 95.4 0.014 4.7E-07 57.3 5.0 99 221-336 11-119 (191)
331 1kht_A Adenylate kinase; phosp 95.4 0.0083 2.8E-07 58.5 3.5 26 219-244 4-29 (192)
332 1ak2_A Adenylate kinase isoenz 95.3 0.012 4.3E-07 59.6 4.9 25 218-242 16-40 (233)
333 4eun_A Thermoresistant glucoki 95.3 0.0087 3E-07 59.2 3.6 28 215-242 26-53 (200)
334 2q6t_A DNAB replication FORK h 95.3 0.057 1.9E-06 60.5 10.7 47 209-261 190-237 (444)
335 1zd8_A GTP:AMP phosphotransfer 95.3 0.0068 2.3E-07 61.3 2.8 25 218-242 7-31 (227)
336 3dl0_A Adenylate kinase; phosp 95.3 0.0064 2.2E-07 60.9 2.6 23 220-242 2-24 (216)
337 3a4m_A L-seryl-tRNA(SEC) kinas 95.3 0.022 7.5E-07 58.9 6.7 26 218-243 4-29 (260)
338 2c95_A Adenylate kinase 1; tra 95.3 0.011 3.7E-07 58.0 4.1 23 563-585 11-33 (196)
339 2pt5_A Shikimate kinase, SK; a 95.3 0.011 3.7E-07 56.4 4.0 27 564-593 3-29 (168)
340 3fb4_A Adenylate kinase; psych 95.3 0.0073 2.5E-07 60.4 2.8 23 220-242 2-24 (216)
341 2bwj_A Adenylate kinase 5; pho 95.3 0.0079 2.7E-07 59.1 3.0 25 218-242 12-36 (199)
342 3cm0_A Adenylate kinase; ATP-b 95.3 0.012 4.1E-07 57.2 4.3 24 219-242 5-28 (186)
343 2eyu_A Twitching motility prot 95.2 0.042 1.4E-06 56.8 8.5 29 215-243 22-50 (261)
344 2pt5_A Shikimate kinase, SK; a 95.2 0.0088 3E-07 57.1 3.2 23 220-242 2-24 (168)
345 1zak_A Adenylate kinase; ATP:A 95.2 0.0098 3.3E-07 59.8 3.7 26 217-242 4-29 (222)
346 3eph_A TRNA isopentenyltransfe 95.2 0.021 7.3E-07 62.2 6.4 35 563-600 4-38 (409)
347 3io5_A Recombination and repai 95.2 0.032 1.1E-06 58.7 7.6 79 220-303 30-125 (333)
348 3lw7_A Adenylate kinase relate 95.2 0.0092 3.1E-07 57.0 3.3 22 563-585 3-24 (179)
349 3cm0_A Adenylate kinase; ATP-b 95.2 0.0096 3.3E-07 57.9 3.4 23 563-585 6-28 (186)
350 1tev_A UMP-CMP kinase; ploop, 95.2 0.01 3.5E-07 57.9 3.7 23 563-585 5-27 (196)
351 1ly1_A Polynucleotide kinase; 95.2 0.0081 2.8E-07 57.9 2.8 23 219-241 3-25 (181)
352 3uie_A Adenylyl-sulfate kinase 95.2 0.0091 3.1E-07 59.0 3.2 30 214-243 21-50 (200)
353 3sr0_A Adenylate kinase; phosp 95.2 0.014 4.8E-07 58.1 4.5 23 220-242 2-24 (206)
354 1ukz_A Uridylate kinase; trans 95.2 0.0085 2.9E-07 59.2 3.0 25 218-242 15-39 (203)
355 2vli_A Antibiotic resistance p 95.2 0.0077 2.6E-07 58.4 2.6 26 218-243 5-30 (183)
356 1nks_A Adenylate kinase; therm 95.2 0.0089 3.1E-07 58.3 3.0 25 220-244 3-27 (194)
357 1ak2_A Adenylate kinase isoenz 95.1 0.013 4.5E-07 59.5 4.3 23 563-585 18-40 (233)
358 1nlf_A Regulatory protein REPA 95.1 0.034 1.1E-06 58.1 7.5 23 563-585 32-54 (279)
359 3fb4_A Adenylate kinase; psych 95.1 0.013 4.4E-07 58.6 4.1 22 564-585 3-24 (216)
360 1knq_A Gluconate kinase; ALFA/ 95.1 0.015 5E-07 56.0 4.3 24 219-242 9-32 (175)
361 2vli_A Antibiotic resistance p 95.1 0.01 3.5E-07 57.5 3.2 28 563-593 7-34 (183)
362 2pt7_A CAG-ALFA; ATPase, prote 95.1 0.03 1E-06 60.1 7.1 99 216-333 169-273 (330)
363 3dl0_A Adenylate kinase; phosp 95.1 0.012 4E-07 58.9 3.7 22 564-585 3-24 (216)
364 1zp6_A Hypothetical protein AT 95.1 0.011 3.6E-07 57.9 3.2 35 563-600 11-45 (191)
365 2qor_A Guanylate kinase; phosp 95.1 0.012 4.2E-07 58.2 3.7 26 217-242 11-36 (204)
366 2bwj_A Adenylate kinase 5; pho 95.0 0.012 4E-07 57.9 3.5 23 563-585 14-36 (199)
367 1svm_A Large T antigen; AAA+ f 95.0 0.034 1.1E-06 60.6 7.4 23 563-585 171-193 (377)
368 1ukz_A Uridylate kinase; trans 95.0 0.016 5.3E-07 57.3 4.3 23 563-585 17-39 (203)
369 3uie_A Adenylyl-sulfate kinase 95.0 0.017 5.9E-07 57.0 4.6 39 562-600 26-64 (200)
370 1n0w_A DNA repair protein RAD5 95.0 0.021 7.2E-07 58.0 5.4 37 563-599 26-68 (243)
371 3tlx_A Adenylate kinase 2; str 95.0 0.036 1.2E-06 56.6 7.1 23 563-585 31-53 (243)
372 2px0_A Flagellar biosynthesis 95.0 0.12 4.2E-06 54.3 11.4 41 217-263 104-144 (296)
373 3foz_A TRNA delta(2)-isopenten 95.0 0.049 1.7E-06 57.2 8.1 24 219-242 11-34 (316)
374 3umf_A Adenylate kinase; rossm 95.0 0.014 4.6E-07 58.6 3.7 25 218-242 29-53 (217)
375 3be4_A Adenylate kinase; malar 95.0 0.014 4.7E-07 58.6 3.7 23 563-585 7-29 (217)
376 1qf9_A UMP/CMP kinase, protein 94.9 0.014 4.6E-07 57.0 3.5 23 563-585 8-30 (194)
377 2p5t_B PEZT; postsegregational 94.9 0.0089 3E-07 61.6 2.3 26 218-243 32-57 (253)
378 1gvn_B Zeta; postsegregational 94.9 0.011 3.9E-07 62.0 3.0 25 218-242 33-57 (287)
379 3e70_C DPA, signal recognition 94.9 0.17 5.7E-06 54.1 12.2 26 561-586 129-154 (328)
380 1zd8_A GTP:AMP phosphotransfer 94.9 0.012 4.2E-07 59.4 3.2 23 563-585 9-31 (227)
381 3c8u_A Fructokinase; YP_612366 94.9 0.017 5.9E-07 57.4 4.2 40 204-243 6-47 (208)
382 1vma_A Cell division protein F 94.9 0.049 1.7E-06 57.6 7.8 38 218-262 104-141 (306)
383 1e4v_A Adenylate kinase; trans 94.8 0.01 3.5E-07 59.3 2.5 23 220-242 2-24 (214)
384 3a4m_A L-seryl-tRNA(SEC) kinas 94.8 0.014 4.7E-07 60.5 3.4 37 563-599 6-42 (260)
385 1e4v_A Adenylate kinase; trans 94.8 0.017 5.9E-07 57.7 3.9 22 564-585 3-24 (214)
386 1zak_A Adenylate kinase; ATP:A 94.8 0.012 4.1E-07 59.2 2.8 23 563-585 7-29 (222)
387 3exa_A TRNA delta(2)-isopenten 94.8 0.027 9.3E-07 59.3 5.5 34 563-599 5-38 (322)
388 2yvu_A Probable adenylyl-sulfa 94.8 0.025 8.4E-07 55.1 4.9 37 562-598 14-50 (186)
389 3sr0_A Adenylate kinase; phosp 94.8 0.02 6.9E-07 56.9 4.3 32 564-600 3-34 (206)
390 1zp6_A Hypothetical protein AT 94.7 0.012 4E-07 57.5 2.5 26 217-242 8-33 (191)
391 1kgd_A CASK, peripheral plasma 94.7 0.016 5.6E-07 56.2 3.5 25 219-243 6-30 (180)
392 2j37_W Signal recognition part 94.7 0.13 4.4E-06 58.2 11.3 37 218-261 101-137 (504)
393 2pbr_A DTMP kinase, thymidylat 94.7 0.022 7.5E-07 55.5 4.5 25 220-244 2-26 (195)
394 3umf_A Adenylate kinase; rossm 94.7 0.018 6.1E-07 57.7 3.8 33 563-600 31-63 (217)
395 2plr_A DTMP kinase, probable t 94.7 0.016 5.5E-07 57.4 3.4 25 219-243 5-29 (213)
396 2pez_A Bifunctional 3'-phospho 94.7 0.022 7.4E-07 55.1 4.2 36 218-260 5-40 (179)
397 3crm_A TRNA delta(2)-isopenten 94.7 0.017 6E-07 61.3 3.8 32 563-597 7-38 (323)
398 2pbr_A DTMP kinase, thymidylat 94.7 0.018 6.3E-07 56.1 3.8 33 564-596 3-35 (195)
399 2pez_A Bifunctional 3'-phospho 94.7 0.023 7.8E-07 54.9 4.4 36 563-598 7-42 (179)
400 4a1f_A DNAB helicase, replicat 94.7 0.15 5.2E-06 54.5 11.2 39 216-261 44-82 (338)
401 1qzm_A ATP-dependent protease 94.6 0.15 5.2E-06 43.2 8.8 69 738-807 1-70 (94)
402 1rz3_A Hypothetical protein rb 94.6 0.031 1.1E-06 55.2 5.4 41 203-243 4-47 (201)
403 4eun_A Thermoresistant glucoki 94.6 0.024 8.2E-07 55.9 4.5 33 563-600 31-63 (200)
404 3nwj_A ATSK2; P loop, shikimat 94.6 0.026 8.8E-07 57.9 4.8 25 218-242 48-72 (250)
405 2xb4_A Adenylate kinase; ATP-b 94.6 0.024 8.4E-07 57.0 4.6 23 220-242 2-24 (223)
406 1ly1_A Polynucleotide kinase; 94.6 0.016 5.3E-07 55.9 3.0 22 563-584 4-25 (181)
407 1p9r_A General secretion pathw 94.6 0.069 2.4E-06 59.0 8.5 47 196-243 146-192 (418)
408 1nn5_A Similar to deoxythymidy 94.6 0.017 5.9E-07 57.4 3.3 27 218-244 9-35 (215)
409 2jaq_A Deoxyguanosine kinase; 94.5 0.018 6.2E-07 56.7 3.4 24 220-243 2-25 (205)
410 2wwf_A Thymidilate kinase, put 94.5 0.016 5.5E-07 57.5 3.0 27 218-244 10-36 (212)
411 3d3q_A TRNA delta(2)-isopenten 94.5 0.07 2.4E-06 57.0 8.0 23 220-242 9-31 (340)
412 3p32_A Probable GTPase RV1496/ 94.5 0.12 4.1E-06 56.0 10.1 39 206-244 65-105 (355)
413 3sfz_A APAF-1, apoptotic pepti 94.5 0.17 5.9E-06 64.2 13.2 47 531-584 124-170 (1249)
414 2xb4_A Adenylate kinase; ATP-b 94.5 0.02 6.9E-07 57.6 3.6 22 564-585 3-24 (223)
415 3tau_A Guanylate kinase, GMP k 94.4 0.017 5.8E-07 57.5 3.0 26 218-243 8-33 (208)
416 2plr_A DTMP kinase, probable t 94.4 0.028 9.6E-07 55.6 4.6 24 563-586 6-29 (213)
417 2v54_A DTMP kinase, thymidylat 94.4 0.018 6.1E-07 56.8 3.0 25 218-242 4-28 (204)
418 1sky_E F1-ATPase, F1-ATP synth 94.4 0.042 1.4E-06 61.2 6.2 27 217-243 150-176 (473)
419 2ewv_A Twitching motility prot 94.4 0.025 8.5E-07 61.8 4.4 29 215-243 133-161 (372)
420 2bbw_A Adenylate kinase 4, AK4 94.4 0.021 7.3E-07 58.3 3.6 25 218-242 27-51 (246)
421 2gxq_A Heat resistant RNA depe 94.4 0.33 1.1E-05 47.5 12.3 24 219-242 39-63 (207)
422 2j41_A Guanylate kinase; GMP, 94.4 0.021 7.2E-07 56.4 3.4 26 217-242 5-30 (207)
423 1cke_A CK, MSSA, protein (cyti 94.4 0.032 1.1E-06 56.0 4.8 24 219-242 6-29 (227)
424 3a8t_A Adenylate isopentenyltr 94.3 0.019 6.5E-07 61.2 3.1 34 563-599 42-75 (339)
425 3r20_A Cytidylate kinase; stru 94.3 0.032 1.1E-06 56.5 4.6 25 218-242 9-33 (233)
426 2if2_A Dephospho-COA kinase; a 94.3 0.018 6.2E-07 56.9 2.8 22 220-242 3-24 (204)
427 1m7g_A Adenylylsulfate kinase; 94.3 0.024 8.2E-07 56.5 3.7 31 213-243 20-50 (211)
428 2ga8_A Hypothetical 39.9 kDa p 94.2 0.05 1.7E-06 58.3 6.1 24 562-585 25-48 (359)
429 1lvg_A Guanylate kinase, GMP k 94.2 0.025 8.7E-07 55.7 3.7 26 218-243 4-29 (198)
430 2jaq_A Deoxyguanosine kinase; 94.2 0.029 9.8E-07 55.2 4.0 22 564-585 3-24 (205)
431 2z0h_A DTMP kinase, thymidylat 94.2 0.024 8.3E-07 55.4 3.4 24 221-244 3-26 (197)
432 1rz3_A Hypothetical protein rb 94.2 0.059 2E-06 53.1 6.2 38 562-599 23-60 (201)
433 3ney_A 55 kDa erythrocyte memb 94.1 0.027 9.1E-07 55.4 3.5 28 216-243 17-44 (197)
434 1kao_A RAP2A; GTP-binding prot 94.1 0.43 1.5E-05 44.3 12.0 23 219-241 4-26 (167)
435 2bdt_A BH3686; alpha-beta prot 94.1 0.024 8.1E-07 55.3 3.1 23 220-242 4-26 (189)
436 1cke_A CK, MSSA, protein (cyti 94.1 0.03 1E-06 56.3 3.8 23 563-585 7-29 (227)
437 3foz_A TRNA delta(2)-isopenten 94.1 0.039 1.3E-06 58.0 4.7 35 563-600 12-46 (316)
438 2if2_A Dephospho-COA kinase; a 94.1 0.026 9E-07 55.7 3.4 22 563-585 3-24 (204)
439 1nrj_B SR-beta, signal recogni 94.1 0.034 1.2E-06 55.4 4.2 27 216-242 10-36 (218)
440 3h1t_A Type I site-specific re 94.0 0.062 2.1E-06 62.6 7.1 40 536-585 183-222 (590)
441 2z0h_A DTMP kinase, thymidylat 94.0 0.03 1E-06 54.7 3.8 30 564-593 3-32 (197)
442 2grj_A Dephospho-COA kinase; T 94.0 0.028 9.5E-07 55.2 3.4 23 220-242 14-36 (192)
443 3tr0_A Guanylate kinase, GMP k 94.0 0.029 9.9E-07 55.3 3.5 24 219-242 8-31 (205)
444 1r8s_A ADP-ribosylation factor 94.0 0.19 6.4E-06 47.0 9.1 24 220-243 2-25 (164)
445 1zd9_A ADP-ribosylation factor 93.9 0.12 4.1E-06 50.0 7.8 24 218-241 22-45 (188)
446 1uj2_A Uridine-cytidine kinase 93.9 0.038 1.3E-06 56.7 4.3 47 217-265 21-67 (252)
447 3a00_A Guanylate kinase, GMP k 93.9 0.031 1.1E-06 54.4 3.5 24 220-243 3-26 (186)
448 1vt4_I APAF-1 related killer D 93.9 0.23 8E-06 60.4 11.4 44 532-583 129-172 (1221)
449 3lda_A DNA repair protein RAD5 93.8 0.053 1.8E-06 59.6 5.6 37 563-599 180-222 (400)
450 3pqc_A Probable GTP-binding pr 93.8 0.12 4E-06 50.0 7.6 25 217-241 22-46 (195)
451 3ice_A Transcription terminati 93.8 0.16 5.4E-06 54.9 8.9 33 212-244 168-200 (422)
452 3vkw_A Replicase large subunit 93.8 0.13 4.3E-06 56.9 8.4 91 562-659 162-260 (446)
453 1zj6_A ADP-ribosylation factor 93.8 0.088 3E-06 50.8 6.6 34 206-240 5-38 (187)
454 3zvl_A Bifunctional polynucleo 93.8 0.054 1.8E-06 60.1 5.5 25 218-242 258-282 (416)
455 2qor_A Guanylate kinase; phosp 93.7 0.028 9.6E-07 55.6 2.9 23 563-585 14-36 (204)
456 2wwf_A Thymidilate kinase, put 93.7 0.042 1.4E-06 54.4 4.2 23 563-585 12-34 (212)
457 3nwj_A ATSK2; P loop, shikimat 93.7 0.034 1.2E-06 57.1 3.5 23 563-585 50-72 (250)
458 2grj_A Dephospho-COA kinase; T 93.7 0.041 1.4E-06 54.0 3.9 33 563-600 14-46 (192)
459 1m7g_A Adenylylsulfate kinase; 93.7 0.04 1.4E-06 54.8 3.9 37 563-599 27-64 (211)
460 2yhs_A FTSY, cell division pro 93.7 0.14 4.9E-06 57.3 8.6 32 562-593 294-325 (503)
461 1svm_A Large T antigen; AAA+ f 93.7 0.038 1.3E-06 60.2 3.9 30 213-242 164-193 (377)
462 3ake_A Cytidylate kinase; CMP 93.6 0.043 1.5E-06 54.1 4.0 23 563-585 4-26 (208)
463 3e70_C DPA, signal recognition 93.6 0.35 1.2E-05 51.5 11.3 29 216-244 127-155 (328)
464 1q57_A DNA primase/helicase; d 93.6 0.33 1.1E-05 55.1 11.9 40 217-262 241-280 (503)
465 1kgd_A CASK, peripheral plasma 93.6 0.032 1.1E-06 54.0 2.9 23 563-585 7-29 (180)
466 3r20_A Cytidylate kinase; stru 93.6 0.043 1.5E-06 55.5 3.8 33 563-600 11-43 (233)
467 1jjv_A Dephospho-COA kinase; P 93.5 0.035 1.2E-06 54.9 3.2 21 563-583 4-24 (206)
468 3bgw_A DNAB-like replicative h 93.5 0.59 2E-05 52.1 13.5 47 208-261 186-233 (444)
469 3dkp_A Probable ATP-dependent 93.5 0.45 1.5E-05 48.1 11.6 24 219-242 67-91 (245)
470 4b3f_X DNA-binding protein smu 93.5 0.13 4.3E-06 60.7 8.4 39 202-242 191-229 (646)
471 2bbw_A Adenylate kinase 4, AK4 93.4 0.039 1.3E-06 56.3 3.5 23 563-585 29-51 (246)
472 1z6g_A Guanylate kinase; struc 93.4 0.043 1.5E-06 55.0 3.7 28 215-242 20-47 (218)
473 4e22_A Cytidylate kinase; P-lo 93.4 0.057 1.9E-06 55.4 4.7 25 218-242 27-51 (252)
474 2v54_A DTMP kinase, thymidylat 93.4 0.038 1.3E-06 54.4 3.2 32 563-596 6-37 (204)
475 3d3q_A TRNA delta(2)-isopenten 93.4 0.041 1.4E-06 58.8 3.5 23 563-585 9-31 (340)
476 1zu4_A FTSY; GTPase, signal re 93.4 0.15 5.1E-06 54.2 8.0 40 560-599 104-143 (320)
477 1qde_A EIF4A, translation init 93.4 1.1 3.7E-05 44.4 14.1 24 219-242 52-76 (224)
478 3fe2_A Probable ATP-dependent 93.3 0.37 1.3E-05 48.8 10.6 18 219-236 67-84 (242)
479 2bdt_A BH3686; alpha-beta prot 93.3 0.038 1.3E-06 53.8 3.0 23 563-585 4-26 (189)
480 2xxa_A Signal recognition part 93.3 0.2 6.8E-06 55.6 9.2 43 559-601 98-141 (433)
481 3ake_A Cytidylate kinase; CMP 93.3 0.055 1.9E-06 53.3 4.2 23 220-242 4-26 (208)
482 1g8f_A Sulfate adenylyltransfe 93.3 0.073 2.5E-06 60.2 5.7 46 198-243 373-420 (511)
483 2wsm_A Hydrogenase expression/ 93.3 0.032 1.1E-06 55.7 2.5 42 202-243 14-55 (221)
484 1nn5_A Similar to deoxythymidy 93.3 0.056 1.9E-06 53.6 4.3 23 563-585 11-33 (215)
485 1svi_A GTP-binding protein YSX 93.3 0.056 1.9E-06 52.5 4.2 26 216-241 21-46 (195)
486 1uf9_A TT1252 protein; P-loop, 93.3 0.049 1.7E-06 53.4 3.7 23 562-584 9-31 (203)
487 3tau_A Guanylate kinase, GMP k 93.3 0.039 1.3E-06 54.8 3.0 23 563-585 10-32 (208)
488 3c8u_A Fructokinase; YP_612366 93.2 0.052 1.8E-06 53.9 3.8 25 562-586 23-47 (208)
489 2j9r_A Thymidine kinase; TK1, 93.2 0.2 6.7E-06 49.7 7.9 95 222-336 32-139 (214)
490 2xtp_A GTPase IMAP family memb 93.2 0.3 1E-05 50.0 9.7 25 217-241 21-45 (260)
491 1uj2_A Uridine-cytidine kinase 93.1 0.062 2.1E-06 55.1 4.4 23 563-585 24-46 (252)
492 2qt1_A Nicotinamide riboside k 93.1 0.069 2.3E-06 52.8 4.6 36 561-600 21-56 (207)
493 1htw_A HI0065; nucleotide-bind 93.1 0.05 1.7E-06 51.5 3.3 28 216-243 31-58 (158)
494 2ius_A DNA translocase FTSK; n 93.1 0.4 1.4E-05 54.2 11.2 38 562-599 168-209 (512)
495 3tr0_A Guanylate kinase, GMP k 93.1 0.043 1.5E-06 54.1 2.9 23 563-585 9-31 (205)
496 3ly5_A ATP-dependent RNA helic 93.1 0.76 2.6E-05 47.1 12.6 19 219-237 92-110 (262)
497 1odf_A YGR205W, hypothetical 3 93.0 0.14 4.8E-06 53.7 7.0 24 562-585 32-55 (290)
498 3cr8_A Sulfate adenylyltranfer 93.0 0.067 2.3E-06 61.3 4.9 42 203-244 352-395 (552)
499 1vma_A Cell division protein F 93.0 0.24 8.4E-06 52.2 8.8 39 561-599 104-142 (306)
500 2j41_A Guanylate kinase; GMP, 93.0 0.044 1.5E-06 54.0 2.9 23 563-585 8-30 (207)
No 1
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=100.00 E-value=1e-82 Score=781.64 Aligned_cols=732 Identities=56% Similarity=0.887 Sum_probs=601.3
Q ss_pred hhhHHhhHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHhhCCCchHHHHHHHcCCChHHHHHHHHHHhccccccccCC--
Q 003094 90 AMFERFTEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRTQVIRMVGESTEAVGAG-- 167 (848)
Q Consensus 90 ~~~~~~t~~a~~~l~~A~~~A~~~~~~~i~~eHlLlall~~~~~~a~~iL~~~gv~~~~l~~~~~~~~~~~~~~~~~~-- 167 (848)
||+++||++++++|..|+.+|+++||.+|++||||+||+.++++.+..+|+.+|+|.+.++..++..+...+.+.|..
T Consensus 1 ~~~~~~t~~a~~al~~A~~~A~~~~h~~i~~eHLLlaLl~~~~~~~~~iL~~~gvd~~~l~~~l~~~l~~~p~~~~~~~~ 80 (854)
T 1qvr_A 1 MNLERWTQAAREALAQAQVLAQRMKHQAIDLPHLWAVLLKDERSLAWRLLEKAGADPKALKELQERELARLPKVEGAEVG 80 (854)
T ss_dssp ---CCSCHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHCCSSSSHHHHHHHTTSSCHHHHHHHHHHHHHTSCCCCGGGTT
T ss_pred CChhhhCHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCCcHHHHHHHHcCCCHHHHHHHHHHHHhhCCCCCCCCCC
Confidence 578899999999999999999999999999999999999999999999999999999999999998886554432210
Q ss_pred ------------------------------------------------------CCCC------CCCCCccchHHhhhhh
Q 003094 168 ------------------------------------------------------VGGG------SSGNKMPTLEEYGTNL 187 (848)
Q Consensus 168 ------------------------------------------------------~~~~------~~~~~~~~l~~~~~~l 187 (848)
..+. ....+.+.|++|+.+|
T Consensus 81 ~~~S~~~~~vL~~A~~~a~~~g~~~I~~ehlLlall~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 160 (854)
T 1qvr_A 81 QYLTSRLSGALNRAEGLMEELKDRYVAVDTLVLALAEATPGLPGLEALKGALKELRGGRTVQTEHAESTYNALEQYGIDL 160 (854)
T ss_dssp CEECHHHHHHHHHHHHHHHTTTCSSCCHHHHHHHHHHHSTTSCCHHHHHHHHTSSCSCCSSCSSCCCCCCSHHHHHEEEH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCcEeeHHHHHHHHHhcccccCCHHHHHHHHHHhccccccccccccccchhHHHHHHhH
Confidence 0000 0112357899999999
Q ss_pred hhhhhcCCCCCccCChHHHHHHHHHhccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCccccc
Q 003094 188 TKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAG 267 (848)
Q Consensus 188 ~~~~~~~~ld~iiG~~~~~~~l~~~l~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~ 267 (848)
+++++++++++++|++++++++.+++.++.++|++|+||||||||++++.+|+.+..+.+|..+.+.+++.++++.+..+
T Consensus 161 ~~~~r~~~ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g 240 (854)
T 1qvr_A 161 TRLAAEGKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAG 240 (854)
T ss_dssp HHHHHTTCSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC------
T ss_pred HHHHhcCCCcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999888998889999999999999988
Q ss_pred ccccchHHHHHHHHHHHHHhC-CCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCCceEEEEeeChHHHHhhhhcChh
Q 003094 268 TKYRGEFEERLKKLMEEIKQS-DEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATTLDEYRKHIEKDPA 346 (848)
Q Consensus 268 ~~~~g~~~~~l~~l~~~~~~~-~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~atn~~~~~~~~~~d~a 346 (848)
.++.|+++.+++.++..+... +++||||||+|.+.+.+...+..++.+.|+++++++.+.+|++||..++.. +.++++
T Consensus 241 ~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~~i~~I~at~~~~~~~-~~~d~a 319 (854)
T 1qvr_A 241 AKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELRLIGATTLDEYRE-IEKDPA 319 (854)
T ss_dssp -----CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHTTCCCEEEEECHHHHHH-HTTCTT
T ss_pred CccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhCCCeEEEEecCchHHhh-hccCHH
Confidence 899999999999999999875 689999999999987776666678889999999999999999999999877 789999
Q ss_pred hhcccCCCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCChhhHHHHHHHHhhHHHHhhcCC
Q 003094 347 LERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQL 426 (848)
Q Consensus 347 l~~Rf~~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~p~~a~~ll~~a~~~~~~~~~~~ 426 (848)
+.+||+.|.|++|+.+++.+|++.++.++..++++.++++++..++.++.+|+.++++|+++++++++|++.+++.....
T Consensus 320 L~rRf~~i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~kai~lldea~a~~~~~~~~~ 399 (854)
T 1qvr_A 320 LERRFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAIDLIDEAAARLRMALESA 399 (854)
T ss_dssp TCSCCCCEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHHHHHHHHHHHHHHHTTTTH
T ss_pred HHhCCceEEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChHHHHHHHHHHHHHHHhhccCC
Confidence 99999999999999999999999999999889999999999999999999999999999999999999999999998888
Q ss_pred chHHHHHHHHHHHHHHHHHHHHcCCChH---HHHHHHHHHHHHHHHHHHHHHhhhhhhh---------------------
Q 003094 427 PEEARELEKELRQITKEKNEAVRGQDFE---KAGELRDREMDLKAQISALVDKGKEMSK--------------------- 482 (848)
Q Consensus 427 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~---~a~~~~~~~~~l~~~~~~~~~~~~~~~~--------------------- 482 (848)
|.++++++..+..+..+...+.++.+.. ....+.++...++..+..+...|.....
T Consensus 400 p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (854)
T 1qvr_A 400 PEEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRREIEL 479 (854)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCSSHHHHSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 9999999999998888887777665332 2333444444444444444444432210
Q ss_pred h------------------------------hhccCCCCCccCHHHHHHHHHHhhCCCCcccCcchHHHHHHHHHHhhcc
Q 003094 483 A------------------------------ETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKR 532 (848)
Q Consensus 483 ~------------------------------~~~~~~~~~~v~~~di~~~~~~~~g~p~~~~~~~~~~~l~~l~~~l~~~ 532 (848)
. ..........++.+++..+++.|+++|...+...+...+..+++.++..
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~v~~~~~ip~~~~~~~~~~~l~~l~~~l~~~ 559 (854)
T 1qvr_A 480 AERQYDLNRAAELRYGELPKLEAEVEALSEKLRGARFVRLEVTEEDIAEIVSRWTGIPVSKLLEGEREKLLRLEEELHKR 559 (854)
T ss_dssp HTTTTCHHHHHHHHTTHHHHHHHHHHHHHHHSSSCSSCCSEECHHHHHHHHHTTSSCHHHHTTCCHHHHHHSHHHHHHHH
T ss_pred HHhcccHHHHHHHhhhhhHHHHHHHHHHHhhhcccccccCCcCHHHHHHHHHHHhCCChHhhcHHHHHHHHHHHHHHhcc
Confidence 0 0011233567999999999999999999888778888888888999999
Q ss_pred ccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhcccCC
Q 003094 533 VIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGS 612 (848)
Q Consensus 533 vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~ 612 (848)
|+||+.+++.+...+...+.++..|++|..++||+||||||||++|++||+.+++.+.+|+.+||+.+.+.+..+.++|.
T Consensus 560 viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~g~ 639 (854)
T 1qvr_A 560 VVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGA 639 (854)
T ss_dssp SCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC---
T ss_pred cCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999988899999999999999999999999
Q ss_pred CCCCcccccccchhHHHHcCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCchhhhccC
Q 003094 613 PPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGG 692 (848)
Q Consensus 613 ~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~i~~~~ 692 (848)
+++|+|+.+++.+++.++..+++|||||||+++++++++.|+++|++|.+++..|+.+++.+++||+|||.+...+....
T Consensus 640 ~~~~~G~~~~g~l~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~~~~~~~~~~ 719 (854)
T 1qvr_A 640 PPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGL 719 (854)
T ss_dssp -----------CHHHHHHHCSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCTTHHHHHHHH
T ss_pred CCCCcCccccchHHHHHHhCCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEecCcChHHHhhhc
Confidence 99999998888999999999999999999999999999999999999999999999999999999999998876553210
Q ss_pred cccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCeEeecHH
Q 003094 693 RRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTER 772 (848)
Q Consensus 693 ~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~~~l~~~~~~~~~~~~~l~i~~~ 772 (848)
++ ...+..+...+.+.+...|+|+|++|||.++.|.||+.+++..|++.++.++..++...+..+.++++
T Consensus 720 ---~~-------~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~~~~~~~~~~~~ 789 (854)
T 1qvr_A 720 ---QK-------GWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEA 789 (854)
T ss_dssp ---HT-------TCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHTTTCEEEECHH
T ss_pred ---cc-------ccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHH
Confidence 00 01244567777777888999999999999999999999999999999999999998877788999999
Q ss_pred HHHHHHHccCCCCCCchHHHHHHHHHHHHHHHHHHHccccCCCCEEEEEEcCCCcEEEEcC
Q 003094 773 FRERVVEEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDVDSDGNVTVLNG 833 (848)
Q Consensus 773 a~~~l~~~~~~~~~g~r~L~~~i~~~l~~~l~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~ 833 (848)
++++|+.++|+|++|+|+|+++|++.+.+++++.++.+++.+|++|.|++++ |++.+...
T Consensus 790 a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~ 849 (854)
T 1qvr_A 790 AKDFLAERGYDPVFGARPLRRVIQRELETPLAQKILAGEVKEGDRVQVDVGP-AGLVFAVP 849 (854)
T ss_dssp HHHHHHHHHCBTTTBTSTHHHHHHHHTHHHHHHHHHHTSSCSSCEEEEECCT-TSCEEESC
T ss_pred HHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHHHHHhCcCCCCCEEEEEEEC-CEEEEEec
Confidence 9999999999999999999999999999999999999999999999999974 56666544
No 2
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=100.00 E-value=7.8e-81 Score=757.54 Aligned_cols=676 Identities=60% Similarity=0.965 Sum_probs=577.7
Q ss_pred HhhHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHhhCCCchHHHHHHHcCCChHHHHHHHHHHhccccccccCCCCCCCC
Q 003094 94 RFTEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRTQVIRMVGESTEAVGAGVGGGSS 173 (848)
Q Consensus 94 ~~t~~a~~~l~~A~~~A~~~~~~~i~~eHlLlall~~~~~~a~~iL~~~gv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 173 (848)
.||++++++|+.|..+|+++|+++|++||||+||++++++.+..+|+.+|++.+.++..+....+...... ...+..+
T Consensus 79 ~~s~~~~~vl~~A~~~A~~~~~~~I~~ehlLlall~~~~~~a~~~L~~~gv~~~~l~~~i~~~~~~~~~~~--~~~~~~~ 156 (758)
T 3pxi_A 79 HYTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNETGS--SAAGTNS 156 (758)
T ss_dssp EECHHHHHHHHHHHHHHHTTTCSSBCHHHHHHHHHHTCCSHHHHHHHHTTCCHHHHHHHHHTTCCCCCTTC-------CC
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhcCCcHHHHHHHHcCCCHHHHHHHHHHHhcCCcccc--ccccccc
Confidence 48999999999999999999999999999999999999999999999999999999998876554321111 0011122
Q ss_pred CCCccchHHhhhhhhhhhhcCCCCCccCChHHHHHHHHHhccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCC
Q 003094 174 GNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEG 253 (848)
Q Consensus 174 ~~~~~~l~~~~~~l~~~~~~~~ld~iiG~~~~~~~l~~~l~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~ 253 (848)
.+..+.|.+|+.+|+++++++++++++|++++++++.+.+.++.++|+||+||||||||++|+++|+.+..+.+|..+.+
T Consensus 157 ~~~~~~l~~~~~~l~~~~~~~~ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~ 236 (758)
T 3pxi_A 157 NANTPTLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRD 236 (758)
T ss_dssp STHHHHHHSSCCBHHHHTTSSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSS
T ss_pred chhhhHHHHHHHHHHHHHhhCCCCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcC
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEeCCcccccccccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCCceEEEEeeC
Q 003094 254 KKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATT 333 (848)
Q Consensus 254 ~~v~~~~~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~atn 333 (848)
.+++.+++ +.++.|+++.+++.+++.+...+++||||| +..+.++.|++.++++.+.+|++||
T Consensus 237 ~~~~~~~~-----g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD------------~~~~~~~~L~~~l~~~~v~~I~at~ 299 (758)
T 3pxi_A 237 KRVMTLDM-----GTKYRGEFEDRLKKVMDEIRQAGNIILFID------------AAIDASNILKPSLARGELQCIGATT 299 (758)
T ss_dssp CCEECC---------------CTTHHHHHHHHHTCCCCEEEEC------------C--------CCCTTSSSCEEEEECC
T ss_pred CeEEEecc-----cccccchHHHHHHHHHHHHHhcCCEEEEEc------------CchhHHHHHHHHHhcCCEEEEeCCC
Confidence 99998887 577899999999999999998889999999 2456788999999999999999999
Q ss_pred hHHHHhhhhcChhhhcccCCCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCChhhHHHHHH
Q 003094 334 LDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLID 413 (848)
Q Consensus 334 ~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~p~~a~~ll~ 413 (848)
..+|.+.+.+++++.|||+.|.|+.|+.+++.+||+.+..++..++++.++++++..++.++.+|+.++++|++++++++
T Consensus 300 ~~~~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~ll~ 379 (758)
T 3pxi_A 300 LDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLID 379 (758)
T ss_dssp TTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHH
T ss_pred hHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHHHHHHH
Confidence 99998888999999999999999999999999999999998888899999999999999999999999999999999999
Q ss_pred HHhhHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCCCCc
Q 003094 414 EAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPV 493 (848)
Q Consensus 414 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (848)
.|++.++++....+..++.++.++..+..+.+......+++.+..++....+++..+..+...|..... .....
T Consensus 380 ~a~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~------~~~~~ 453 (758)
T 3pxi_A 380 EAGSKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEKQG------QENSE 453 (758)
T ss_dssp HHHHHHHHHTTC--CCTHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHSGGGHHHH------CC---
T ss_pred HHHHHHHhhccCCCcchhhHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc------ccCcc
Confidence 999999999888888999999999999999999999999999999988888888888888888765422 24567
Q ss_pred cCHHHHHHHHHHhhCCCCcccCcchHHHHHHHHHHhhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcch
Q 003094 494 VTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVG 573 (848)
Q Consensus 494 v~~~di~~~~~~~~g~p~~~~~~~~~~~l~~l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtG 573 (848)
++.+++..+++.|+++|...+..++...+..+++.+...++||+.+++.+...+...+.+...|.+|.+++||+||||||
T Consensus 454 v~~~~i~~~v~~~~~ip~~~~~~~~~~~l~~l~~~l~~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtG 533 (758)
T 3pxi_A 454 VTVDDIAMVVSSWTGVPVSKIAQTETDKLLNMENILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVG 533 (758)
T ss_dssp CCTHHHHHHHHTTC-------CHHHHSCC-CHHHHHHTTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSS
T ss_pred cCHHHHHHHHHHHhCCChHHhhHHHHHHHHHHHHHHhCcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCC
Confidence 88999999999999999998888887778889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCceEEecccccccccchhcccCCCCCCcccccccchhHHHHcCCCeEEEEcCCCcCChHHHHHH
Q 003094 574 KSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMM 653 (848)
Q Consensus 574 KT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~~~~~L 653 (848)
||++|+++|+.+++.+.+|+.+||+++.+.+..+ ++.++++++..+++|||||||+++++++++.|
T Consensus 534 KT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~--------------~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~L 599 (758)
T 3pxi_A 534 KTELARALAESIFGDEESMIRIDMSEYMEKHSTS--------------GGQLTEKVRRKPYSVVLLDAIEKAHPDVFNIL 599 (758)
T ss_dssp HHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC-----------------CHHHHHHCSSSEEEEECGGGSCHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcceEEEechhcccccccc--------------cchhhHHHHhCCCeEEEEeCccccCHHHHHHH
Confidence 9999999999999999999999999997654332 35678889999999999999999999999999
Q ss_pred HhhhcCcEEEcCCCceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCe
Q 003094 654 LQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDE 733 (848)
Q Consensus 654 l~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~ 733 (848)
+++|++|.+++.+|+.+++.+++||+|||.+... ...+...+...|+|+|++|||.
T Consensus 600 l~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~------------------------~~~~~~~~~~~f~p~l~~Rl~~ 655 (758)
T 3pxi_A 600 LQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASE------------------------KDKVMGELKRAFRPEFINRIDE 655 (758)
T ss_dssp HHHHHHSBCC-----CCBCTTCEEEEEESSSTTC------------------------CHHHHHHHHHHSCHHHHTTSSE
T ss_pred HHHhccCeEEcCCCCEeccCCeEEEEeCCCChhh------------------------HHHHHHHHHhhCCHHHHhhCCe
Confidence 9999999999999999999999999999976641 1223455666799999999999
Q ss_pred EEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHHHHHHHHHHHHHHccccC
Q 003094 734 MIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIK 813 (848)
Q Consensus 734 ~i~f~~l~~~el~~I~~~~l~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~l~~~l~~~~l~~~~~ 813 (848)
+|.|+||+.+++.+|+..++.++..++...+..+.++++++++|++.+|+|++|+|+|+++|++.+.++++++++.+.+.
T Consensus 656 ~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~i~~~v~~~l~~~~l~~~~~ 735 (758)
T 3pxi_A 656 IIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKHVEDRLSEELLRGNIH 735 (758)
T ss_dssp EEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCTTTTTTTHHHHHHHHTHHHHHHHHHTTCSC
T ss_pred EEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999987788999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEEcCCCcEEEEcC
Q 003094 814 EGDSVIVDVDSDGNVTVLNG 833 (848)
Q Consensus 814 ~~~~~~v~~~~~~~~~~~~~ 833 (848)
.|++|.|++++ |++.+...
T Consensus 736 ~~~~~~~~~~~-~~~~~~~~ 754 (758)
T 3pxi_A 736 KGQHIVLDVED-GEFVVKTT 754 (758)
T ss_dssp SSSEEEEEESS-SSEEEEEC
T ss_pred CCCEEEEEEEC-CEEEEEEe
Confidence 99999999985 57776654
No 3
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=100.00 E-value=2.1e-77 Score=728.82 Aligned_cols=663 Identities=43% Similarity=0.722 Sum_probs=575.0
Q ss_pred HhhHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHhhCCCchHHHHHHHcCCChHHHHHHHHHHhcccc---c-cccCCCC
Q 003094 94 RFTEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRTQVIRMVGEST---E-AVGAGVG 169 (848)
Q Consensus 94 ~~t~~a~~~l~~A~~~A~~~~~~~i~~eHlLlall~~~~~~a~~iL~~~gv~~~~l~~~~~~~~~~~~---~-~~~~~~~ 169 (848)
.||+.++++++.|..+|+.+|+++|++||||+||++++++.+..+|+.+|++.+.+...+........ . ..+....
T Consensus 79 ~~s~~~~~vl~~A~~~a~~~~~~~I~~ehlLlall~~~~~~a~~~L~~~gi~~~~l~~~i~~~~~~~~~~~~~~~~~~~~ 158 (758)
T 1r6b_X 79 QPTLSFQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGTRKDEPTQSSDPGSQPN 158 (758)
T ss_dssp EECHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHTTCTTCHHHHHHHHTTCCHHHHHHHHHTC-----------------
T ss_pred CcCHHHHHHHHHHHHHHHHcCCCEeeHHHHHHHHhccccchHHHHHHHcCCCHHHHHHHHHHhhcccccccccccccccc
Confidence 47999999999999999999999999999999999999888999999999999988876654221110 0 0000000
Q ss_pred CCCCCCCccchHHhhhhhhhhhhcCCCCCccCChHHHHHHHHHhccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCC
Q 003094 170 GGSSGNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPD 249 (848)
Q Consensus 170 ~~~~~~~~~~l~~~~~~l~~~~~~~~ld~iiG~~~~~~~l~~~l~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~ 249 (848)
......+.+.|.+|+.+|+++++++++++++|++++++++.+.+.+..++|+||+||||||||++|+.+++.+..+.+|.
T Consensus 159 ~~~~~~~~~~l~~~~~~l~~~~~~~~~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~ 238 (758)
T 1r6b_X 159 SEEQAGGEERLENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPE 238 (758)
T ss_dssp ----------CCSSSCBHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCG
T ss_pred ccccccchhHHHHHhHhHHHHHhcCCCCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCCh
Confidence 01112346789999999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred CCCCceEEEEeCCcccccccccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCC-chHHHHHHHhhhhcCCceEE
Q 003094 250 TIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAE-GAIDAANILKPSLARGELQC 328 (848)
Q Consensus 250 ~l~~~~v~~~~~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~-~~~~~~~~L~~~l~~~~v~v 328 (848)
.+.+.+++.++++.+..+.++.|+++.+++.+++.+....++||||||+|.+++.+... +..+..+.|+++++++.+.+
T Consensus 239 ~~~~~~~~~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~~~~~~ 318 (758)
T 1r6b_X 239 VMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRV 318 (758)
T ss_dssp GGTTCEEEECCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSCCCEE
T ss_pred hhcCCEEEEEcHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhCCCeEE
Confidence 88899999999999988888999999999999999988788999999999998876553 57788999999999999999
Q ss_pred EEeeChHHHHhhhhcChhhhcccCCCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCChhhH
Q 003094 329 IGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKA 408 (848)
Q Consensus 329 I~atn~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~p~~a 408 (848)
|++||.+++.+.+.+|++|.+||+.+.|+.|+.+++.+|++.+..++..++.+.++++++..++.++.+|+.++++|+++
T Consensus 319 I~at~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~~~ 398 (758)
T 1r6b_X 319 IGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKA 398 (758)
T ss_dssp EEEECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHHH
T ss_pred EEEeCchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccCchHH
Confidence 99999999888888999999999999999999999999999999998888999999999999999999999999999999
Q ss_pred HHHHHHHhhHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccC
Q 003094 409 IDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAG 488 (848)
Q Consensus 409 ~~ll~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 488 (848)
++++++|+..+++... .
T Consensus 399 i~lld~a~~~~~~~~~---------------------------------------------------------------~ 415 (758)
T 1r6b_X 399 IDVIDEAGARARLMPV---------------------------------------------------------------S 415 (758)
T ss_dssp HHHHHHHHHHHHHSSS---------------------------------------------------------------C
T ss_pred HHHHHHHHHHHhcccc---------------------------------------------------------------c
Confidence 9999999865544210 0
Q ss_pred CCCCccCHHHHHHHHHHhhCCCCcccCcchHHHHHHHHHHhhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeec
Q 003094 489 DVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSG 568 (848)
Q Consensus 489 ~~~~~v~~~di~~~~~~~~g~p~~~~~~~~~~~l~~l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~G 568 (848)
.....|+.+|+..+++.|+++|...+.+++...+..+.+.+...++||+++++.|..++...+.|+..|++|.+++||+|
T Consensus 416 ~~~~~v~~~di~~~~~~~~~ip~~~~~~~~~~~l~~l~~~l~~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G 495 (758)
T 1r6b_X 416 KRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAG 495 (758)
T ss_dssp CCCCSCCHHHHHHHHHHHSCCCCCCSSSSHHHHHHHHHHHHTTTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEEC
T ss_pred ccCCccCHHHHHHHHHHhcCCCccccchhHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEEC
Confidence 12456899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhcccCCCCCCcccccccchhHHHHcCCCeEEEEcCCCcCChH
Q 003094 569 PTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPD 648 (848)
Q Consensus 569 p~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~ 648 (848)
|||||||++|+++|+.+ +.+|+.+||+++.+.+.++.++|.++||+|+.+++.+.+.++.++++|||||||++++++
T Consensus 496 ~~GtGKT~la~~la~~l---~~~~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~~~~ 572 (758)
T 1r6b_X 496 PTGVGKTEVTVQLSKAL---GIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPD 572 (758)
T ss_dssp STTSSHHHHHHHHHHHH---TCEEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHTTHHHHHHHHCSSEEEEEETGGGSCHH
T ss_pred CCCCcHHHHHHHHHHHh---cCCEEEEechhhcchhhHhhhcCCCCCCcCccccchHHHHHHhCCCcEEEEeCccccCHH
Confidence 99999999999999998 689999999999999999999999999999988889999999999999999999999999
Q ss_pred HHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhh
Q 003094 649 VFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFL 728 (848)
Q Consensus 649 ~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll 728 (848)
+++.|+++|++|.+++..|+.+++.|++||+|||.+...+.. ..+||..... ...+.+.+...|+|+|+
T Consensus 573 ~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~~~~~~~~--~~~g~~~~~~---------~~~~~~~~~~~~~~~l~ 641 (758)
T 1r6b_X 573 VFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETER--KSIGLIHQDN---------STDAMEEIKKIFTPEFR 641 (758)
T ss_dssp HHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECSSCC----------------------------CHHHHHHHSCHHHH
T ss_pred HHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCcchhhhhh--cccCccccch---------HHHHHHHHHHhcCHHHH
Confidence 999999999999999999999999999999999988765543 2455532111 12345667778999999
Q ss_pred hccCeEEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 003094 729 NRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSMAEKML 808 (848)
Q Consensus 729 ~R~d~~i~f~~l~~~el~~I~~~~l~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~l~~~l~~~~l 808 (848)
+|||.+|.|+||+.+++..|+..++.++..++...+..+.++++++++|++++|++.+|+|+|++.|++.+.+++++.++
T Consensus 642 ~R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~~~l~~~~l 721 (758)
T 1r6b_X 642 NRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANELL 721 (758)
T ss_dssp TTCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTTEEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHTHHHHHHHH
T ss_pred hhCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998888877888999999999999999999999999999999999999999999
Q ss_pred ccccCCCCEEEEEEcCCC-cEEEEcC
Q 003094 809 AREIKEGDSVIVDVDSDG-NVTVLNG 833 (848)
Q Consensus 809 ~~~~~~~~~~~v~~~~~~-~~~~~~~ 833 (848)
.+++..|+++.|++++++ ++.+...
T Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 747 (758)
T 1r6b_X 722 FGSLVDGGQVTVALDKEKNELTYGFQ 747 (758)
T ss_dssp HSTTTTCEEEEEEEEGGGTEEEEEEE
T ss_pred cCcCCCCCEEEEEEeCCceeEEEEEc
Confidence 999999999999998543 2555443
No 4
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=100.00 E-value=1.2e-45 Score=422.45 Aligned_cols=390 Identities=60% Similarity=0.953 Sum_probs=337.8
Q ss_pred HhhHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHhhCCCchHHHHHHHcCCChHHHHHHHHHHhccccccccCCCCCCCC
Q 003094 94 RFTEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRTQVIRMVGESTEAVGAGVGGGSS 173 (848)
Q Consensus 94 ~~t~~a~~~l~~A~~~A~~~~~~~i~~eHlLlall~~~~~~a~~iL~~~gv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 173 (848)
.||++++++|+.|..+|+++|+++|++||||+||++++++.+..+|..+|++++.++..+....+......+ .....+
T Consensus 79 ~~S~~~~~vL~~A~~~A~~~g~~~I~teHLLlaLl~~~~~~a~~iL~~~gv~~~~l~~~i~~~~~~~~~~~~--~~~~~~ 156 (468)
T 3pxg_A 79 HYTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNETGSS--AAGTNS 156 (468)
T ss_dssp EECHHHHHHHHHHHHHHHTTTCSSBCHHHHHHHHHHTCCSHHHHHHHHTTCCHHHHHHHHHTTCCCCCTTC-------CC
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHhcccchHHHHHHHcCCCHHHHHHHHHHHhccCccccc--ccCcCC
Confidence 489999999999999999999999999999999999999999999999999999999988765543211100 001122
Q ss_pred CCCccchHHhhhhhhhhhhcCCCCCccCChHHHHHHHHHhccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCC
Q 003094 174 GNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEG 253 (848)
Q Consensus 174 ~~~~~~l~~~~~~l~~~~~~~~ld~iiG~~~~~~~l~~~l~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~ 253 (848)
....+.|.+|+.+|+++++++++|+++|++++++++.+++.+...+|+||+||||||||++|+++|+.+..+.+|..+.+
T Consensus 157 ~~~~~~l~~~~~~l~~~~r~~~ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~ 236 (468)
T 3pxg_A 157 NANTPTLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRD 236 (468)
T ss_dssp STHHHHHHSSCCBHHHHTTSSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSS
T ss_pred ccCchHHHHHHHHHHHHHhcCCCCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcC
Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEeCCcccccccccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCCceEEEEeeC
Q 003094 254 KKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATT 333 (848)
Q Consensus 254 ~~v~~~~~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~atn 333 (848)
.+++.++++ .++.|+++..++.+++.+...+++||||| +..+..+.|++.++++.+.+|++||
T Consensus 237 ~~~~~l~~~-----~~~~g~~e~~~~~~~~~~~~~~~~iLfiD------------~~~~a~~~L~~~L~~g~v~vI~at~ 299 (468)
T 3pxg_A 237 KRVMTLDMG-----TKYRGEFEDRLKKVMDEIRQAGNIILFID------------AAIDASNILKPSLARGELQCIGATT 299 (468)
T ss_dssp CCEECC---------------CTTHHHHHHHHHTCCCCEEEEC------------C--------CCCTTSSSCEEEEECC
T ss_pred CeEEEeeCC-----ccccchHHHHHHHHHHHHHhcCCeEEEEe------------CchhHHHHHHHhhcCCCEEEEecCC
Confidence 999999887 56788888999999999998889999999 2456789999999999999999999
Q ss_pred hHHHHhhhhcChhhhcccCCCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCChhhHHHHHH
Q 003094 334 LDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLID 413 (848)
Q Consensus 334 ~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~p~~a~~ll~ 413 (848)
..+|.+.+.+++++.+||+.|.|++|+.+++.+|++.+..++..++++.++++++..++.++.+|+.++++|++++++++
T Consensus 300 ~~e~~~~~~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ll~ 379 (468)
T 3pxg_A 300 LDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLID 379 (468)
T ss_dssp TTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHhCccceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHHHHH
Confidence 99988888999999999999999999999999999999998888899999999999999999999999999999999999
Q ss_pred HHhhHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCCCCc
Q 003094 414 EAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPV 493 (848)
Q Consensus 414 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (848)
+++..+++.....|..++++++.+..+..+....+...||+.+..++++..+++.++......|...... ....
T Consensus 380 ~a~~~~~~~~~~~p~~i~~l~~~i~~l~~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~------~~~~ 453 (468)
T 3pxg_A 380 EAGSKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQ------ENSE 453 (468)
T ss_dssp HHHHHHHHHTTSCCSSTHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHSGGGHHHHH------HTTC
T ss_pred HHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC------CCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999764332 2568
Q ss_pred cCHHHHHHHHHHhhC
Q 003094 494 VTEVDIQHIVSAWTG 508 (848)
Q Consensus 494 v~~~di~~~~~~~~g 508 (848)
|+.+||..+++.|||
T Consensus 454 ~~~~~~~~~~~~~~~ 468 (468)
T 3pxg_A 454 VTVDDIAMVVSSWTG 468 (468)
T ss_dssp CCTHHHHHHHHTTC-
T ss_pred cCHHHHHHHHHHHhC
Confidence 999999999999986
No 5
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=2.4e-42 Score=409.73 Aligned_cols=459 Identities=22% Similarity=0.296 Sum_probs=311.5
Q ss_pred CCCCCccCChHHHHHHHHHh-------------ccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEe
Q 003094 194 GKLDPVVGRQPQIERVVQIL-------------GRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLD 260 (848)
Q Consensus 194 ~~ld~iiG~~~~~~~l~~~l-------------~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~ 260 (848)
.+++++.|.++++++|.+.+ +..+++++|||||||||||++|+++|+++ +.+++.++
T Consensus 201 v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el----------g~~~~~v~ 270 (806)
T 3cf2_A 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET----------GAFFFLIN 270 (806)
T ss_dssp CCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT----------TCEEEEEE
T ss_pred CChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh----------CCeEEEEE
Confidence 46899999999888877753 23567899999999999999999999988 67899999
Q ss_pred CCcccccccccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCC---chHHHHHHHhhhh----cCCceEEEEeeC
Q 003094 261 MGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAE---GAIDAANILKPSL----ARGELQCIGATT 333 (848)
Q Consensus 261 ~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~---~~~~~~~~L~~~l----~~~~v~vI~atn 333 (848)
+.++. +++.|+.+..++.+|..++...|+||||||+|.+++.+... ....+.+.|+..+ +++.++||++||
T Consensus 271 ~~~l~--sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN 348 (806)
T 3cf2_A 271 GPEIM--SKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATN 348 (806)
T ss_dssp HHHHH--SSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECS
T ss_pred hHHhh--cccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecC
Confidence 99888 67899999999999999999999999999999999765432 2344556666555 366799999999
Q ss_pred hHHHHhhhhcChhhhc--ccC-CCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCChhhHHH
Q 003094 334 LDEYRKHIEKDPALER--RFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAID 410 (848)
Q Consensus 334 ~~~~~~~~~~d~al~~--Rf~-~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~p~~a~~ 410 (848)
.++ .+|++++| ||+ .|+|+.|+.++|.+||+.++++.... .+..+..++..+.+|.+. +...
T Consensus 349 ~~d-----~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~-----~dvdl~~lA~~T~Gfsga-----DL~~ 413 (806)
T 3cf2_A 349 RPN-----SIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-----DDVDLEQVANETHGHVGA-----DLAA 413 (806)
T ss_dssp STT-----TSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEEC-----TTCCHHHHHHHCCSCCHH-----HHHH
T ss_pred Chh-----hcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCC-----cccCHHHHHHhcCCCCHH-----HHHH
Confidence 998 79999999 997 89999999999999999876532211 233578889988888654 5666
Q ss_pred HHHHHhhHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCC
Q 003094 411 LIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDV 490 (848)
Q Consensus 411 ll~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 490 (848)
++.+|...+..+.. .. +...+...... ...
T Consensus 414 Lv~eA~~~A~~r~~--------------------~~-i~~~~~~~~~e-----------------------------~~~ 443 (806)
T 3cf2_A 414 LCSEAALQAIRKKM--------------------DL-IDLEDETIDAE-----------------------------VMN 443 (806)
T ss_dssp HHHHHHHHHHHHHH--------------------HH-GGGTCCCCSHH-----------------------------HHH
T ss_pred HHHHHHHHHHHhcc--------------------cc-ccccccccchh-----------------------------hhc
Confidence 77766543322210 00 00000000000 000
Q ss_pred CCccCHHHHHHHHHHhhCCCCcccCcchHHHHHHHHHHhhccccChHHHHHHHHHHHHHHHc----cCCCCCCCceEEEe
Q 003094 491 GPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARV----GLKNPNRPIASFIF 566 (848)
Q Consensus 491 ~~~v~~~di~~~~~~~~g~p~~~~~~~~~~~l~~l~~~l~~~vigq~~~~~~l~~~~~~~~~----~~~~~~~p~~~lLl 566 (848)
...++.+|+...+............. ...+.-++.+.|.+++++.|.+.+..... .......|...+||
T Consensus 444 ~~~v~~~Df~~Al~~~~ps~~r~~~~-------~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl 516 (806)
T 3cf2_A 444 SLAVTMDDFRWALSQSNPSALRETVV-------EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLF 516 (806)
T ss_dssp HCEECTTHHHHHHSSSSCCCCCCCCC-------BCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEE
T ss_pred cceeeHHHHHHHHHhCCCcccccccc-------cCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEE
Confidence 23456666665544322111100000 01122356788888888888777654311 00111233445999
Q ss_pred ecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhcccCCCCCCcccccc--cchhHHHHcCCCeEEEEcCCCc
Q 003094 567 SGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEG--GQLTEAVRRRPYTVVLFDEIEK 644 (848)
Q Consensus 567 ~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~~g~~~~--~~l~~~~~~~~~~Vl~lDEid~ 644 (848)
|||||||||++|+++|..+ +.+|+.++.+++... |+|.++. ..+|..+++..+|||||||||.
T Consensus 517 ~GPPGtGKT~lAkaiA~e~---~~~f~~v~~~~l~s~------------~vGese~~vr~lF~~Ar~~~P~IifiDEiDs 581 (806)
T 3cf2_A 517 YGPPGCGKTLLAKAIANEC---QANFISIKGPELLTM------------WFGESEANVREIFDKARQAAPCVLFFDELDS 581 (806)
T ss_dssp ESSTTSSHHHHHHHHHHTT---TCEEEECCHHHHHTT------------TCSSCHHHHHHHHHHHHTTCSEEEECSCGGG
T ss_pred ecCCCCCchHHHHHHHHHh---CCceEEeccchhhcc------------ccchHHHHHHHHHHHHHHcCCceeechhhhH
Confidence 9999999999999999987 889999988887543 8887765 5678888888899999999998
Q ss_pred CCh--------------HHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHH
Q 003094 645 AHP--------------DVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNR 710 (848)
Q Consensus 645 l~~--------------~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~ 710 (848)
+-+ .+.+.||..|+.-. ...++++|++||....
T Consensus 582 l~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~---------~~~~V~vi~aTN~p~~------------------------ 628 (806)
T 3cf2_A 582 IAKARGGNIGDGGGAADRVINQILTEMDGMS---------TKKNVFIIGATNRPDI------------------------ 628 (806)
T ss_dssp CC--------------CHHHHHHHHHHHSSC---------SSSSEEEECC-CCSSS------------------------
T ss_pred HhhccCCCCCCCchHHHHHHHHHHHHHhCCC---------CCCCEEEEEeCCCchh------------------------
Confidence 732 37899999998632 1246788899995542
Q ss_pred HHHHHHHHHHhhcChhhhh--ccCeEEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCc
Q 003094 711 IKSLVTEELKQYFRPEFLN--RLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGA 788 (848)
Q Consensus 711 ~~~~~~~~l~~~~~~~ll~--R~d~~i~f~~l~~~el~~I~~~~l~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~ 788 (848)
++|+++. |||..|+|+.++.++..+|++.++.+. ...-.++ ++.|++ ....|..
T Consensus 629 ------------lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~-------~~~~~~d---l~~la~--~t~g~SG 684 (806)
T 3cf2_A 629 ------------IDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKS-------PVAKDVD---LEFLAK--MTNGFSG 684 (806)
T ss_dssp ------------SCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC---------CCC--------------------
T ss_pred ------------CCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCC-------CCCCCCC---HHHHHH--hCCCCCH
Confidence 6789987 999999999999999999997666331 1111111 345555 3345667
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 003094 789 RPLRRAIMRLLEDSMAEKML 808 (848)
Q Consensus 789 r~L~~~i~~~l~~~l~~~~l 808 (848)
.+|...++.....++-+.+-
T Consensus 685 adi~~l~~~A~~~a~r~~~~ 704 (806)
T 3cf2_A 685 ADLTEICQRACKLAIRESIE 704 (806)
T ss_dssp -CHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88999999988888877643
No 6
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=100.00 E-value=1.3e-34 Score=314.80 Aligned_cols=304 Identities=62% Similarity=1.012 Sum_probs=272.2
Q ss_pred hHHHHHHHHHHhhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecc
Q 003094 518 ESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDM 597 (848)
Q Consensus 518 ~~~~l~~l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~ 597 (848)
+...+.++++.+.+.++||+.+++.+...+.....++..|.+|..++||+||||||||++|+++|+.+.+.+.+++.+||
T Consensus 4 ~~~~l~~l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~ 83 (311)
T 4fcw_A 4 EREKLLRLEEELHKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDM 83 (311)
T ss_dssp HHHHHHTHHHHHHTTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEG
T ss_pred HHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeec
Confidence 45667889999999999999999999999999999999999999899999999999999999999999888889999999
Q ss_pred cccccccchhcccCCCCCCcccccccchhHHHHcCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecCCeEE
Q 003094 598 SEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLL 677 (848)
Q Consensus 598 ~~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~ii 677 (848)
+.+........++|.+++|+|+...+.+.+.+..++++||||||+|++++++++.|+++|+++.+.+..++.+++.+++|
T Consensus 84 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~ii 163 (311)
T 4fcw_A 84 TEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVI 163 (311)
T ss_dssp GGCCSTTHHHHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEE
T ss_pred ccccccccHHHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEE
Confidence 99988888889999999999998778899999999999999999999999999999999999999998899999999999
Q ss_pred EEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHHHHHHHHH
Q 003094 678 IMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVF 757 (848)
Q Consensus 678 I~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~~~l~~~~ 757 (848)
|+|||.+...+...... ...+..+...+...+...|+|+|++||+.++.|.|++.+++..|+..++.++.
T Consensus 164 I~ttn~~~~~i~~~~~~----------~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~ 233 (311)
T 4fcw_A 164 IMTSNLGSPLILEGLQK----------GWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLR 233 (311)
T ss_dssp EEEESTTHHHHHTTTTS----------CCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHH
T ss_pred EEecccCHHHHHhhhcc----------cccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 99999877655442211 12223355566666677899999999999999999999999999999999999
Q ss_pred HHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHHHHHHHHHHHHHHccccCCCCEEEEEEcCCCcEEEEc
Q 003094 758 DRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDVDSDGNVTVLN 832 (848)
Q Consensus 758 ~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~l~~~l~~~~l~~~~~~~~~~~v~~~~~~~~~~~~ 832 (848)
..+...+..+.++++++++|.+++|++++|+|+|++.+++.+..+++++++.+++++|+++.|++++ +++.+..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i~~~~~~~~~~i~i~~~~-~~~~~~~ 307 (311)
T 4fcw_A 234 ARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKILAGEVKEGDRVQVDVGP-AGLVFAV 307 (311)
T ss_dssp HHHHTTTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHHHHHHHHTSSCTTCEEEEEECS-SSEEEEC
T ss_pred HHHHhCCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEEC-CeEEEEe
Confidence 8887777889999999999999878779999999999999999999999999999999999999985 5777654
No 7
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.98 E-value=3.4e-33 Score=338.23 Aligned_cols=459 Identities=22% Similarity=0.306 Sum_probs=299.8
Q ss_pred hcCCCCCccCChHHHHHHHHHhc-------------cCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEE
Q 003094 192 EEGKLDPVVGRQPQIERVVQILG-------------RRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVIT 258 (848)
Q Consensus 192 ~~~~ld~iiG~~~~~~~l~~~l~-------------~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~ 258 (848)
.+..+++++|.++++++|.+.+. ...+.++||+||||||||+++++++..+ +..++.
T Consensus 199 ~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l----------~~~~i~ 268 (806)
T 1ypw_A 199 NEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET----------GAFFFL 268 (806)
T ss_dssp SSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTT----------TCEEEE
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHc----------CCcEEE
Confidence 44678999999999998888764 3567789999999999999999999987 567889
Q ss_pred EeCCcccccccccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCCc---hHHHHHHHhhhhc----CCceEEEEe
Q 003094 259 LDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEG---AIDAANILKPSLA----RGELQCIGA 331 (848)
Q Consensus 259 ~~~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~~---~~~~~~~L~~~l~----~~~v~vI~a 331 (848)
+++..+. ..+.++.+..+..+|..+....++++||||+|.+.+.+.... ...+.+.|..+++ +..+.+|++
T Consensus 269 v~~~~l~--~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~a 346 (806)
T 1ypw_A 269 INGPEIM--SKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAA 346 (806)
T ss_dssp EEHHHHS--SSSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEE
T ss_pred EEchHhh--hhhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecc
Confidence 9988776 467789999999999999888899999999999987643322 2334555555554 567899999
Q ss_pred eChHHHHhhhhcChhhhc--ccC-CCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCChhhH
Q 003094 332 TTLDEYRKHIEKDPALER--RFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKA 408 (848)
Q Consensus 332 tn~~~~~~~~~~d~al~~--Rf~-~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~p~~a 408 (848)
||.++ .+++++.+ ||. .+.++.|+.+++.+|++.+..++... .+..+..++..+.+|.+. ..
T Consensus 347 tn~~~-----~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~-----~~~~l~~la~~t~g~~g~-----dl 411 (806)
T 1ypw_A 347 TNRPN-----SIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-----DDVDLEQVANETHGHVGA-----DL 411 (806)
T ss_dssp CSCTT-----TSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCC-----TTCCTHHHHHSCSSCCHH-----HH
T ss_pred cCCch-----hcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCc-----ccchhHHHHHhhcCcchH-----HH
Confidence 99987 68999998 896 78999999999999999776543211 222355666666665433 33
Q ss_pred HHHHHHHhhHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccC
Q 003094 409 IDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAG 488 (848)
Q Consensus 409 ~~ll~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 488 (848)
..+..++...+..+.... .+..... + ... .
T Consensus 412 ~~l~~ea~~~a~r~~~~~------------------------i~~~~~~-~-----------~~~--------------~ 441 (806)
T 1ypw_A 412 AALCSEAALQAIRKKMDL------------------------IDLEDET-I-----------DAE--------------V 441 (806)
T ss_dssp HHHHHHHHHHHHHHTTTT------------------------TSCHHHH-C-----------CHH--------------H
T ss_pred HHHHHHHHHHHHhhhccc------------------------cchhhhc-c-----------chh--------------h
Confidence 333333322111110000 0000000 0 000 0
Q ss_pred CCCCccCHHHHHHHHHHhhCCCCcccCcchHHHHHHHHHHhhccccChHHHHHHHHHHHHHHHc----cCCCCCCCceEE
Q 003094 489 DVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARV----GLKNPNRPIASF 564 (848)
Q Consensus 489 ~~~~~v~~~di~~~~~~~~g~p~~~~~~~~~~~l~~l~~~l~~~vigq~~~~~~l~~~~~~~~~----~~~~~~~p~~~l 564 (848)
.....++.+|+...+........... +.......++++.|++.+++.+...+..... .....-.+..++
T Consensus 442 ~~~~~v~~~d~~~al~~~~~s~~~~~-------~~~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~v 514 (806)
T 1ypw_A 442 MNSLAVTMDDFRWALSQSNPSALRET-------VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGV 514 (806)
T ss_dssp HTTCCCCTTHHHHHHHHSCCCCCCCC-------CCCCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCC
T ss_pred hhhhhhhhhhhhccccccCchhhhhh-------cccCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCcee
Confidence 01223444555444433221110000 0011123466788999888888776643211 001112344569
Q ss_pred EeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhcccCCCCCCcccccc--cchhHHHHcCCCeEEEEcCC
Q 003094 565 IFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEG--GQLTEAVRRRPYTVVLFDEI 642 (848)
Q Consensus 565 Ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~~g~~~~--~~l~~~~~~~~~~Vl~lDEi 642 (848)
||+||||||||++|+++|..+ +.+++.++++++... |+|..+. ..++..++...++|||||||
T Consensus 515 LL~GppGtGKT~Lakala~~~---~~~~i~v~~~~l~~~------------~~g~~~~~i~~~f~~a~~~~p~vl~iDEi 579 (806)
T 1ypw_A 515 LFYGPPGCGKTLLAKAIANEC---QANFISIKGPELLTM------------WFGESEANVREIFDKARQAAPCVLFFDEL 579 (806)
T ss_dssp CCBCCTTSSHHHHHHHHHHHH---TCCCCCCCCSSSTTC------------CTTTSSHHHHHHHHHHHHHCSBCCCCSSH
T ss_pred EEECCCCCCHHHHHHHHHHHh---CCCEEEEechHhhhh------------hcCccHHHHHHHHHHHHhcCCeEEEEECh
Confidence 999999999999999999998 678888888876432 5555443 45667777777899999999
Q ss_pred CcCC--------------hHHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccH
Q 003094 643 EKAH--------------PDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSY 708 (848)
Q Consensus 643 d~l~--------------~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~ 708 (848)
|++. ..+++.|++.|+... ...+++||+|||....
T Consensus 580 d~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~---------~~~~v~vI~tTN~~~~---------------------- 628 (806)
T 1ypw_A 580 DSIAKARGGNIGDGGGAADRVINQILTEMDGMS---------TKKNVFIIGATNRPDI---------------------- 628 (806)
T ss_dssp HHHCCTTTTCCSHHHHHHHHHHHHHHTTCC---------------CCBCCCCCBSCGG----------------------
T ss_pred hhhhhhccCCCCCcchhHHHHHHHHHHHHhccc---------ccCCeEEEEecCCccc----------------------
Confidence 9862 357899999998643 2257899999985442
Q ss_pred HHHHHHHHHHHHhhcChhhhh--ccCeEEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCeEeecHHHHHHHHHccCCCCC
Q 003094 709 NRIKSLVTEELKQYFRPEFLN--RLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSY 786 (848)
Q Consensus 709 ~~~~~~~~~~l~~~~~~~ll~--R~d~~i~f~~l~~~el~~I~~~~l~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~ 786 (848)
++|++++ ||+..|.|++++.++..+|++..+.+.. ..-.++ ++.|+. ....+
T Consensus 629 --------------ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~-------~~~~~~---l~~la~--~t~g~ 682 (806)
T 1ypw_A 629 --------------IDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSP-------VAKDVD---LEFLAK--MTNGF 682 (806)
T ss_dssp --------------GSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC-----------CCC---CSCSCG--GGSSS
T ss_pred --------------CCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCC-------CCcccC---HHHHHH--hcccc
Confidence 6788887 9999999999999999999977664321 000011 112222 22345
Q ss_pred CchHHHHHHHHHHHHHHHHH
Q 003094 787 GARPLRRAIMRLLEDSMAEK 806 (848)
Q Consensus 787 g~r~L~~~i~~~l~~~l~~~ 806 (848)
..++++..++.....++.+.
T Consensus 683 sgadi~~l~~~a~~~a~~~~ 702 (806)
T 1ypw_A 683 SGADLTEICQRACKLAIRES 702 (806)
T ss_dssp CCHHHHHHHHHHHHHHHSCC
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 56778777776666555443
No 8
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.94 E-value=1.3e-27 Score=265.28 Aligned_cols=270 Identities=23% Similarity=0.370 Sum_probs=184.8
Q ss_pred HHHHHHhhccccChHHHHHHHHHHHHHHHc----cCCCC--CCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEec
Q 003094 523 LKMEETLHKRVIGQDEAVKAISRAIRRARV----GLKNP--NRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLD 596 (848)
Q Consensus 523 ~~l~~~l~~~vigq~~~~~~l~~~~~~~~~----~~~~~--~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~ 596 (848)
..+.+.+.+.|+||+.+++.+..++..... +.... ..+..++||+||||||||++|++||+.+ +.+|+.++
T Consensus 7 ~~l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~---~~~~~~~~ 83 (363)
T 3hws_A 7 HEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL---DVPFTMAD 83 (363)
T ss_dssp HHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT---TCCEEEEE
T ss_pred HHHHHHHHhhccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc---CCCEEEec
Confidence 456677888899999999999988854332 22111 1244579999999999999999999998 78999999
Q ss_pred ccccccccchhcccCCCCCCcccccccchhHHHH-------cCCCeEEEEcCCCcCChH--------------HHHHHHh
Q 003094 597 MSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVR-------RRPYTVVLFDEIEKAHPD--------------VFNMMLQ 655 (848)
Q Consensus 597 ~~~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~-------~~~~~Vl~lDEid~l~~~--------------~~~~Ll~ 655 (848)
|+.+.. ++|+|....+.+...+. .++++||||||||++++. +++.|++
T Consensus 84 ~~~l~~-----------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~ 152 (363)
T 3hws_A 84 ATTLTE-----------AGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLK 152 (363)
T ss_dssp HHHHTT-----------CHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHH
T ss_pred hHHhcc-----------cccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHH
Confidence 987642 13555543444444433 345789999999999887 9999999
Q ss_pred hhcCcE--EEcCCCceeec--------CCeEEEEecCC-Cchhhhc----cCcccccccCCCcc--cccHHHHHHHH-HH
Q 003094 656 ILEDGR--LTDSKGRTVDF--------KNTLLIMTSNV-GSSVIEK----GGRRIGFDLDYDEK--DSSYNRIKSLV-TE 717 (848)
Q Consensus 656 ~le~g~--~~~~~g~~v~~--------~~~iiI~tsN~-~~~~i~~----~~~~~~f~~~~~~~--~~~~~~~~~~~-~~ 717 (848)
+||+.. +.+.+|+.+++ .|.+||+++|. +...+.. ....+||....... ......+...+ .+
T Consensus 153 ~leg~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~ 232 (363)
T 3hws_A 153 LIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPE 232 (363)
T ss_dssp HHHCC----------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHH
T ss_pred HhcCceeeccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHH
Confidence 999322 23344554444 45555555554 3333222 12456664332211 11222222222 23
Q ss_pred HHHhh-cChhhhhccCeEEEcCCCCHHHHHHHHHH----HHHHHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHH
Q 003094 718 ELKQY-FRPEFLNRLDEMIVFRQLTKLEVKEIADI----MLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLR 792 (848)
Q Consensus 718 ~l~~~-~~~~ll~R~d~~i~f~~l~~~el~~I~~~----~l~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~ 792 (848)
++... |+|+|++||+.++.|.||+.+++.+|+.. ++.++...+...+..+.++++++++|++++|+|++|+|+|+
T Consensus 233 ~l~~~~~~~~l~~R~~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~ 312 (363)
T 3hws_A 233 DLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLR 312 (363)
T ss_dssp HHHHHTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHH
T ss_pred HHHHcCCCHHHhcccCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHH
Confidence 44444 89999999999999999999999999998 88888888877788999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 003094 793 RAIMRLLEDSMAEK 806 (848)
Q Consensus 793 ~~i~~~l~~~l~~~ 806 (848)
++|++.+.+++++.
T Consensus 313 ~~ie~~~~~~l~~~ 326 (363)
T 3hws_A 313 SIVEAALLDTMYDL 326 (363)
T ss_dssp HHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999998865
No 9
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1e-24 Score=238.38 Aligned_cols=219 Identities=24% Similarity=0.323 Sum_probs=170.3
Q ss_pred cCCCCCccCChHHHHHHHHHh-------------ccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEE
Q 003094 193 EGKLDPVVGRQPQIERVVQIL-------------GRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITL 259 (848)
Q Consensus 193 ~~~ld~iiG~~~~~~~l~~~l-------------~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~ 259 (848)
..+|+++.|.++++++|.+.+ +.++++++|||||||||||++|+++|.++ +.+++.+
T Consensus 144 ~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~----------~~~f~~v 213 (405)
T 4b4t_J 144 DSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHT----------DCKFIRV 213 (405)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHH----------TCEEEEE
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhh----------CCCceEE
Confidence 357999999999999877653 45788999999999999999999999999 7889999
Q ss_pred eCCcccccccccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCC---chHH---HHHHHhhhhc----CCceEEE
Q 003094 260 DMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAE---GAID---AANILKPSLA----RGELQCI 329 (848)
Q Consensus 260 ~~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~---~~~~---~~~~L~~~l~----~~~v~vI 329 (848)
+.+.+. .+|.|+.+..++.+|..++...|+||||||+|.+++.+... +... ..+.|+..++ ..+++||
T Consensus 214 ~~s~l~--sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vI 291 (405)
T 4b4t_J 214 SGAELV--QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKII 291 (405)
T ss_dssp EGGGGS--CSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEE
T ss_pred EhHHhh--ccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEE
Confidence 999988 67999999999999999999999999999999998765332 1222 3334444443 5679999
Q ss_pred EeeChHHHHhhhhcChhhhc--ccC-CCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCC-hHHHHHHHhhhhcccccCCCh
Q 003094 330 GATTLDEYRKHIEKDPALER--RFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYT-DEALVSAAQLSYQYISDRFLP 405 (848)
Q Consensus 330 ~atn~~~~~~~~~~d~al~~--Rf~-~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s-~~~l~~l~~~s~~~~~~~~~p 405 (848)
+|||.++ .+||+++| ||+ .|+|+.|+.++|.+||+.++++. .++ +..+..++..+.+|.+.
T Consensus 292 aATNrpd-----~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~------~l~~dvdl~~lA~~t~G~SGA---- 356 (405)
T 4b4t_J 292 MATNRLD-----ILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKM------NLTRGINLRKVAEKMNGCSGA---- 356 (405)
T ss_dssp EEESCSS-----SSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTS------BCCSSCCHHHHHHHCCSCCHH----
T ss_pred eccCChh-----hCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCC------CCCccCCHHHHHHHCCCCCHH----
Confidence 9999998 79999999 997 89999999999999999887643 222 23578899998887655
Q ss_pred hhHHHHHHHHhhHHHHhhcCCchHHHHHHHHHHHH
Q 003094 406 DKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQI 440 (848)
Q Consensus 406 ~~a~~ll~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 440 (848)
+...++.+|+..+-.+ ....-..++++.++..+
T Consensus 357 -Di~~l~~eA~~~Air~-~~~~vt~~Df~~Al~~v 389 (405)
T 4b4t_J 357 -DVKGVCTEAGMYALRE-RRIHVTQEDFELAVGKV 389 (405)
T ss_dssp -HHHHHHHHHHHHHHHT-TCSBCCHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHc-CCCCcCHHHHHHHHHHH
Confidence 6777777776554322 22222334454444433
No 10
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.92 E-value=1.4e-24 Score=242.02 Aligned_cols=281 Identities=23% Similarity=0.331 Sum_probs=186.8
Q ss_pred HHHHHHHhhccccChHHHHHHHHHHHH----HHHccC-------C----------CCCCCceEEEeecCCcchHHHHHHH
Q 003094 522 LLKMEETLHKRVIGQDEAVKAISRAIR----RARVGL-------K----------NPNRPIASFIFSGPTGVGKSELAKA 580 (848)
Q Consensus 522 l~~l~~~l~~~vigq~~~~~~l~~~~~----~~~~~~-------~----------~~~~p~~~lLl~Gp~GtGKT~lA~~ 580 (848)
...+.+.|.+.|+||+.+++.|..++. ..+.+. . ....+..++||+||||||||++|++
T Consensus 12 ~~~l~~~L~~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~ 91 (376)
T 1um8_A 12 PKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQT 91 (376)
T ss_dssp HHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHH
T ss_pred HHHHHHHHhhHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHH
Confidence 456778889999999999999998873 332221 0 0112334699999999999999999
Q ss_pred HHHHhcCCCCceEEecccccccccchhcccCCCCCCcccccccchhHHH-------HcCCCeEEEEcCCCcCChH-----
Q 003094 581 LAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAV-------RRRPYTVVLFDEIEKAHPD----- 648 (848)
Q Consensus 581 la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~-------~~~~~~Vl~lDEid~l~~~----- 648 (848)
+|+.+ +.+++.++|..+.. .+|.|....+.+...+ ..+.++||||||++++++.
T Consensus 92 la~~l---~~~~~~~~~~~~~~-----------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~ 157 (376)
T 1um8_A 92 LAKHL---DIPIAISDATSLTE-----------AGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRS 157 (376)
T ss_dssp HHHHT---TCCEEEEEGGGCC-------------------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------
T ss_pred HHHHh---CCCEEEecchhhhh-----------cCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCc
Confidence 99998 67899999887642 2355554334444433 2346789999999999988
Q ss_pred ---------HHHHHHhhhcCcEE--EcCCCce--------eecCCeEEEEecCCCchhhhccCc-----ccccccCCCcc
Q 003094 649 ---------VFNMMLQILEDGRL--TDSKGRT--------VDFKNTLLIMTSNVGSSVIEKGGR-----RIGFDLDYDEK 704 (848)
Q Consensus 649 ---------~~~~Ll~~le~g~~--~~~~g~~--------v~~~~~iiI~tsN~~~~~i~~~~~-----~~~f~~~~~~~ 704 (848)
+++.|+++|+++.+ ++.+++. +...|++||+++|.. .+-....+ .+||.......
T Consensus 158 ~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~-~l~~~l~~R~~~~~~g~~~~~~~~ 236 (376)
T 1um8_A 158 ITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFD-GLAEIIKKRTTQNVLGFTQEKMSK 236 (376)
T ss_dssp ------CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCT-THHHHTTTSCSSCCCSCCCSSCCT
T ss_pred eecccchHHHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHH-HHHHHHHHHhcccccCCCchhhhc
Confidence 99999999998753 4444444 344566777777632 11111111 23443222110
Q ss_pred cccHHHHHHHHHHHHH-hhcChhhhhccCeEEEcCCCCHHHHHHHHH----HHHHHHHHHHhcCCCeEeecHHHHHHHHH
Q 003094 705 DSSYNRIKSLVTEELK-QYFRPEFLNRLDEMIVFRQLTKLEVKEIAD----IMLKEVFDRLKTKDIELQVTERFRERVVE 779 (848)
Q Consensus 705 ~~~~~~~~~~~~~~l~-~~~~~~ll~R~d~~i~f~~l~~~el~~I~~----~~l~~~~~~~~~~~~~l~i~~~a~~~l~~ 779 (848)
......+.....+.+. ..|.|+|++||+.++.|+||+.+++..|+. .++.++..++...+..+.++++++++|+.
T Consensus 237 ~~~~~~~~~~~~~~l~~~~~~p~l~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~ 316 (376)
T 1um8_A 237 KEQEAILHLVQTHDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQ 316 (376)
T ss_dssp TTTTTSGGGCCHHHHHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHH
T ss_pred cchhHHHhhcCHHHHhhcCCChHHhcCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHH
Confidence 0001111112222332 348999999999999999999999999997 57777777776678889999999999999
Q ss_pred ccCCCCCCchHHHHHHHHHHHHHHHHHHHccccCCCCEEEEE
Q 003094 780 EGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVD 821 (848)
Q Consensus 780 ~~~~~~~g~r~L~~~i~~~l~~~l~~~~l~~~~~~~~~~~v~ 821 (848)
++|++.+|+|+|++.|++++.++++++.-. .+..+.|+
T Consensus 317 ~~~~~~~~~R~L~~~le~~~~~~~~~~~~~----~~~~~~i~ 354 (376)
T 1um8_A 317 LALERKTGARGLRAIIEDFCLDIMFDLPKL----KGSEVRIT 354 (376)
T ss_dssp HHHHTTCTGGGHHHHHHHHHHHHHHTGGGG----TTSEEEEC
T ss_pred HhcccccCcHHHHHHHHHHHHHHHhhccCC----CCCEEEEe
Confidence 888888999999999999999998876322 34566663
No 11
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.92 E-value=2.7e-24 Score=235.29 Aligned_cols=198 Identities=22% Similarity=0.313 Sum_probs=161.5
Q ss_pred CCCCCccCChHHHHHHHHHh-------------ccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEe
Q 003094 194 GKLDPVVGRQPQIERVVQIL-------------GRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLD 260 (848)
Q Consensus 194 ~~ld~iiG~~~~~~~l~~~l-------------~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~ 260 (848)
.+|+++.|.+++++.|.+.+ +.++++++|||||||||||++|+++|.++ +.+++.++
T Consensus 179 v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~----------~~~fi~v~ 248 (437)
T 4b4t_I 179 ESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT----------SATFLRIV 248 (437)
T ss_dssp CCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHH----------TCEEEEEE
T ss_pred CcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHh----------CCCEEEEE
Confidence 57999999999998877653 45778999999999999999999999999 68899999
Q ss_pred CCcccccccccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCC---chHH---HHHHHhhhh----cCCceEEEE
Q 003094 261 MGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAE---GAID---AANILKPSL----ARGELQCIG 330 (848)
Q Consensus 261 ~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~---~~~~---~~~~L~~~l----~~~~v~vI~ 330 (848)
.+.+. .+|.|+.+..++.+|..++...|+||||||+|.+++.+... +... ....|+..+ ..++++||+
T Consensus 249 ~s~l~--sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIa 326 (437)
T 4b4t_I 249 GSELI--QKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIM 326 (437)
T ss_dssp SGGGC--CSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEE
T ss_pred HHHhh--hccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEE
Confidence 99998 67999999999999999999999999999999998765322 2222 233333333 256799999
Q ss_pred eeChHHHHhhhhcChhhhc--ccC-CCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCCh-HHHHHHHhhhhcccccCCChh
Q 003094 331 ATTLDEYRKHIEKDPALER--RFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTD-EALVSAAQLSYQYISDRFLPD 406 (848)
Q Consensus 331 atn~~~~~~~~~~d~al~~--Rf~-~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~-~~l~~l~~~s~~~~~~~~~p~ 406 (848)
|||.++ .+||+|+| ||+ .|+|+.|+.++|.+||+.++.+. .+++ -.+..++..+.+|.+.
T Consensus 327 ATNrpd-----~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~------~l~~dvdl~~LA~~T~GfSGA----- 390 (437)
T 4b4t_I 327 ATNKIE-----TLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKM------NLSEDVNLETLVTTKDDLSGA----- 390 (437)
T ss_dssp EESCST-----TCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTS------CBCSCCCHHHHHHHCCSCCHH-----
T ss_pred eCCChh-----hcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCC------CCCCcCCHHHHHHhCCCCCHH-----
Confidence 999998 79999999 997 89999999999999999887643 2332 2478899988888654
Q ss_pred hHHHHHHHHhhHH
Q 003094 407 KAIDLIDEAGSRV 419 (848)
Q Consensus 407 ~a~~ll~~a~~~~ 419 (848)
+...++.+|...+
T Consensus 391 DI~~l~~eA~~~A 403 (437)
T 4b4t_I 391 DIQAMCTEAGLLA 403 (437)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6777777776554
No 12
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.5e-23 Score=231.70 Aligned_cols=200 Identities=26% Similarity=0.335 Sum_probs=162.2
Q ss_pred CCCCCccCChHHHHHHHHH-------------hccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEe
Q 003094 194 GKLDPVVGRQPQIERVVQI-------------LGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLD 260 (848)
Q Consensus 194 ~~ld~iiG~~~~~~~l~~~-------------l~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~ 260 (848)
.+|+++.|.+++++.|.+. ++.++++++|||||||||||++|+++|+++ +.+++.++
T Consensus 206 vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~----------~~~fi~vs 275 (467)
T 4b4t_H 206 VTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRT----------DATFIRVI 275 (467)
T ss_dssp CCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHH----------TCEEEEEE
T ss_pred CCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhcc----------CCCeEEEE
Confidence 5799999999999988764 345789999999999999999999999999 68899999
Q ss_pred CCcccccccccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCCc---hHH---HHHHHhhhh----cCCceEEEE
Q 003094 261 MGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEG---AID---AANILKPSL----ARGELQCIG 330 (848)
Q Consensus 261 ~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~~---~~~---~~~~L~~~l----~~~~v~vI~ 330 (848)
++.+. .+|.|+.+..++.+|..++...|+||||||+|.++..+...+ ... ....++..+ ..+.++||+
T Consensus 276 ~s~L~--sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIa 353 (467)
T 4b4t_H 276 GSELV--QKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMF 353 (467)
T ss_dssp GGGGC--CCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEE
T ss_pred hHHhh--cccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEe
Confidence 99998 679999999999999999999999999999999987654332 122 223333333 356799999
Q ss_pred eeChHHHHhhhhcChhhhc--ccC-CCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCChhh
Q 003094 331 ATTLDEYRKHIEKDPALER--RFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDK 407 (848)
Q Consensus 331 atn~~~~~~~~~~d~al~~--Rf~-~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~p~~ 407 (848)
|||.++ .+|++++| ||+ .|+|+.|+.++|.+||+.+++++.... +-.+..+++.+.+|.+. +
T Consensus 354 ATNrpd-----~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~-----dvdl~~LA~~T~GfSGA-----D 418 (467)
T 4b4t_H 354 ATNRPN-----TLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVER-----GIRWELISRLCPNSTGA-----E 418 (467)
T ss_dssp ECSCTT-----SBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCS-----SCCHHHHHHHCCSCCHH-----H
T ss_pred CCCCcc-----cCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCC-----CCCHHHHHHHCCCCCHH-----H
Confidence 999998 79999999 998 899999999999999998876432221 22477888988887654 6
Q ss_pred HHHHHHHHhhHHH
Q 003094 408 AIDLIDEAGSRVR 420 (848)
Q Consensus 408 a~~ll~~a~~~~~ 420 (848)
...++.+|+..+-
T Consensus 419 I~~l~~eAa~~Ai 431 (467)
T 4b4t_H 419 LRSVCTEAGMFAI 431 (467)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777777765543
No 13
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.91 E-value=8.9e-24 Score=234.82 Aligned_cols=197 Identities=25% Similarity=0.328 Sum_probs=159.0
Q ss_pred cCCCCCccCChHHHHHHHHH-------------hccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEE
Q 003094 193 EGKLDPVVGRQPQIERVVQI-------------LGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITL 259 (848)
Q Consensus 193 ~~~ld~iiG~~~~~~~l~~~-------------l~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~ 259 (848)
..+|+++.|.+++++.|.+. ++.++++++|||||||||||++|+++|.++ +.+++.+
T Consensus 177 ~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~----------~~~f~~v 246 (434)
T 4b4t_M 177 TETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT----------NATFLKL 246 (434)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH----------TCEEEEE
T ss_pred CCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHh----------CCCEEEE
Confidence 35799999999999988764 245778999999999999999999999999 7889999
Q ss_pred eCCcccccccccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCCc---hHH---HHHHHhhhhc----CCceEEE
Q 003094 260 DMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEG---AID---AANILKPSLA----RGELQCI 329 (848)
Q Consensus 260 ~~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~~---~~~---~~~~L~~~l~----~~~v~vI 329 (848)
+++.+. .+|.|+.+..++.+|..++...|+||||||+|.+++.+.... ... ....|+..++ .++++||
T Consensus 247 ~~s~l~--~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVI 324 (434)
T 4b4t_M 247 AAPQLV--QMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVL 324 (434)
T ss_dssp EGGGGC--SSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEE
T ss_pred ehhhhh--hcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEE
Confidence 999998 679999999999999999999999999999999987654322 222 2333444443 5679999
Q ss_pred EeeChHHHHhhhhcChhhhc--ccC-CCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCChh
Q 003094 330 GATTLDEYRKHIEKDPALER--RFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPD 406 (848)
Q Consensus 330 ~atn~~~~~~~~~~d~al~~--Rf~-~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~p~ 406 (848)
+|||.++ .+||++.| ||+ .|+|+.|+.++|.+||+.++.++.... +-.+..++..+.+|.+.
T Consensus 325 aaTNrp~-----~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~-----dvdl~~lA~~t~G~sGA----- 389 (434)
T 4b4t_M 325 AATNRVD-----VLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDD-----DINWQELARSTDEFNGA----- 389 (434)
T ss_dssp EECSSCC-----CCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCS-----CCCHHHHHHHCSSCCHH-----
T ss_pred EeCCCch-----hcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCC-----cCCHHHHHHhCCCCCHH-----
Confidence 9999998 79999988 997 899999999999999998887543222 22477888888887654
Q ss_pred hHHHHHHHHh
Q 003094 407 KAIDLIDEAG 416 (848)
Q Consensus 407 ~a~~ll~~a~ 416 (848)
+...++.+|+
T Consensus 390 Di~~l~~eA~ 399 (434)
T 4b4t_M 390 QLKAVTVEAG 399 (434)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4555555553
No 14
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.91 E-value=3.4e-24 Score=238.57 Aligned_cols=161 Identities=19% Similarity=0.286 Sum_probs=126.3
Q ss_pred hHHHHcC-CCeEEEEcCCCcCChH------------HHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCchhhhccC
Q 003094 626 TEAVRRR-PYTVVLFDEIEKAHPD------------VFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGG 692 (848)
Q Consensus 626 ~~~~~~~-~~~Vl~lDEid~l~~~------------~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~i~~~~ 692 (848)
.++++++ +++|+++|||||+... +|+.||++||...... ....++..+++||+|+.+...
T Consensus 242 ~~ai~~ae~~~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~-~~~~~d~~~ilfI~~gaf~~~------ 314 (444)
T 1g41_A 242 QKAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVST-KHGMVKTDHILFIASGAFQVA------ 314 (444)
T ss_dssp HHHHHHHHHHCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEE-TTEEEECTTCEEEEEECCSSC------
T ss_pred HHHHHHhccCCeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhccccccc-ccceecCCcEEEEeccccccC------
Confidence 4556555 6779999999999642 8999999999877664 345788999999999742210
Q ss_pred cccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHH----HHHHHHHHHHHhcCCCeEe
Q 003094 693 RRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIA----DIMLKEVFDRLKTKDIELQ 768 (848)
Q Consensus 693 ~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~----~~~l~~~~~~~~~~~~~l~ 768 (848)
.. ..+.|+|++||+.+|.|++|+.+|+.+|+ ...+.++...+...+.++.
T Consensus 315 --------~~------------------~dlipel~~R~~i~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~ 368 (444)
T 1g41_A 315 --------RP------------------SDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIA 368 (444)
T ss_dssp --------CG------------------GGSCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEE
T ss_pred --------Ch------------------hhcchHHhcccceeeeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEE
Confidence 00 01459999999888999999999999999 4566777777888899999
Q ss_pred ecHHHHHHHHHcc-----CCCCCCchHHHHHHHHHHHHHHHHHHHccccCCCCEEEEEEc
Q 003094 769 VTERFRERVVEEG-----YNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDVD 823 (848)
Q Consensus 769 i~~~a~~~l~~~~-----~~~~~g~r~L~~~i~~~l~~~l~~~~l~~~~~~~~~~~v~~~ 823 (848)
|+++++.+|++.+ |....|+|.|++.|++++.+..++.. . ..+.++.|+.+
T Consensus 369 ~~~~al~~i~~~a~~~~~~t~~~GaR~L~~~ie~~~~~~~~~~~-~---~~~~~~~i~~~ 424 (444)
T 1g41_A 369 FTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSAS-D---MNGQTVNIDAA 424 (444)
T ss_dssp ECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHGG-G---CTTCEEEECHH
T ss_pred ECHHHHHHHHHHHHHhccCCccCCchHHHHHHHHHHHHHHhhcc-c---cCCCeEEEeHH
Confidence 9999999999864 45889999999999999999888762 2 23466666543
No 15
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.7e-23 Score=232.82 Aligned_cols=199 Identities=26% Similarity=0.365 Sum_probs=161.5
Q ss_pred CCCCCccCChHHHHHHHHHh-------------ccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEe
Q 003094 194 GKLDPVVGRQPQIERVVQIL-------------GRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLD 260 (848)
Q Consensus 194 ~~ld~iiG~~~~~~~l~~~l-------------~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~ 260 (848)
.+|+++.|.+++++.|.+.+ +.++++++|||||||||||++|+++|+++ +.+++.++
T Consensus 178 v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~----------~~~~~~v~ 247 (437)
T 4b4t_L 178 ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATI----------GANFIFSP 247 (437)
T ss_dssp SCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH----------TCEEEEEE
T ss_pred CChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHh----------CCCEEEEe
Confidence 46999999999998876653 45788999999999999999999999999 78899999
Q ss_pred CCcccccccccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCCc---hH---HHHHHHhhhhc----CCceEEEE
Q 003094 261 MGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEG---AI---DAANILKPSLA----RGELQCIG 330 (848)
Q Consensus 261 ~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~~---~~---~~~~~L~~~l~----~~~v~vI~ 330 (848)
++.+. .+|.|+.+..++.+|..++...|+||||||+|.+++.+...+ .. ...+.|+..++ .++++||+
T Consensus 248 ~s~l~--sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ 325 (437)
T 4b4t_L 248 ASGIV--DKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIM 325 (437)
T ss_dssp GGGTC--CSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEE
T ss_pred hhhhc--cccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEE
Confidence 99988 679999999999999999999999999999999987653322 22 23344444443 46799999
Q ss_pred eeChHHHHhhhhcChhhhc--ccC-CCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCChhh
Q 003094 331 ATTLDEYRKHIEKDPALER--RFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDK 407 (848)
Q Consensus 331 atn~~~~~~~~~~d~al~~--Rf~-~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~p~~ 407 (848)
|||.++ .+||+|+| ||+ .|+|+.|+.++|.+||+.++.++... .+..+..++..+.+|.+. +
T Consensus 326 ATNrp~-----~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~-----~d~dl~~lA~~t~G~sGA-----D 390 (437)
T 4b4t_L 326 ATNRPD-----TLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKT-----GEFDFEAAVKMSDGFNGA-----D 390 (437)
T ss_dssp EESSTT-----SSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBC-----SCCCHHHHHHTCCSCCHH-----H
T ss_pred ecCCch-----hhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCC-----cccCHHHHHHhCCCCCHH-----H
Confidence 999998 79999998 597 89999999999999999888753221 233478889988887654 6
Q ss_pred HHHHHHHHhhHH
Q 003094 408 AIDLIDEAGSRV 419 (848)
Q Consensus 408 a~~ll~~a~~~~ 419 (848)
...++.+|+..+
T Consensus 391 i~~l~~eA~~~a 402 (437)
T 4b4t_L 391 IRNCATEAGFFA 402 (437)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 677777776544
No 16
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.90 E-value=9e-23 Score=226.69 Aligned_cols=195 Identities=22% Similarity=0.274 Sum_probs=157.9
Q ss_pred CCCCCccCChHHHHHHHHHh-------------ccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEe
Q 003094 194 GKLDPVVGRQPQIERVVQIL-------------GRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLD 260 (848)
Q Consensus 194 ~~ld~iiG~~~~~~~l~~~l-------------~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~ 260 (848)
.+++++.|.+++++.|.+.+ +.++++++|||||||||||++|+++|+.+ +.+++.++
T Consensus 169 v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~----------~~~~~~v~ 238 (428)
T 4b4t_K 169 VTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANST----------KAAFIRVN 238 (428)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHH----------TCEEEEEE
T ss_pred CCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCeEEEe
Confidence 57999999999998876653 45788999999999999999999999999 78899999
Q ss_pred CCcccccccccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCC---ch---HHHHHHHhhhh----cCCceEEEE
Q 003094 261 MGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAE---GA---IDAANILKPSL----ARGELQCIG 330 (848)
Q Consensus 261 ~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~---~~---~~~~~~L~~~l----~~~~v~vI~ 330 (848)
++.+. .+|.|+.+..++.+|..++...|+|+||||+|.+++.+... +. ..+.+.|+..+ ...+++||+
T Consensus 239 ~~~l~--~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~ 316 (428)
T 4b4t_K 239 GSEFV--HKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIM 316 (428)
T ss_dssp GGGTC--CSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEE
T ss_pred cchhh--ccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEE
Confidence 99988 67999999999999999999999999999999998765321 11 22334444443 356799999
Q ss_pred eeChHHHHhhhhcChhhhc--ccC-CCcCC-CCCHHHHHHHHHHHHHHHhhhhcCCCC-hHHHHHHHhhhhcccccCCCh
Q 003094 331 ATTLDEYRKHIEKDPALER--RFQ-PVKVP-EPSVDETIQILKGLRERYEIHHKLRYT-DEALVSAAQLSYQYISDRFLP 405 (848)
Q Consensus 331 atn~~~~~~~~~~d~al~~--Rf~-~i~~~-~p~~~e~~~Il~~~~~~~~~~~~~~~s-~~~l~~l~~~s~~~~~~~~~p 405 (848)
|||.++ .+||+++| ||+ .|+|| .|+.++|..||+.++.+. .+. +..+..++..+.+|.+.
T Consensus 317 aTN~~~-----~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~------~l~~~~dl~~lA~~t~G~sga---- 381 (428)
T 4b4t_K 317 ATNRAD-----TLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKM------SLAPEADLDSLIIRNDSLSGA---- 381 (428)
T ss_dssp EESCSS-----SCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSS------CBCTTCCHHHHHHHTTTCCHH----
T ss_pred ecCChh-----hcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCC------CCCcccCHHHHHHHCCCCCHH----
Confidence 999998 79999999 997 89997 799999999999888743 222 23478889988888654
Q ss_pred hhHHHHHHHHh
Q 003094 406 DKAIDLIDEAG 416 (848)
Q Consensus 406 ~~a~~ll~~a~ 416 (848)
+...++.+|+
T Consensus 382 -di~~l~~eA~ 391 (428)
T 4b4t_K 382 -VIAAIMQEAG 391 (428)
T ss_dssp -HHHHHHHHHH
T ss_pred -HHHHHHHHHH
Confidence 4555555554
No 17
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.89 E-value=4.8e-22 Score=215.25 Aligned_cols=251 Identities=22% Similarity=0.373 Sum_probs=185.7
Q ss_pred HHHHHHhhccccChHHHHHHHHHHHHHHHc--cCCC---CCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecc
Q 003094 523 LKMEETLHKRVIGQDEAVKAISRAIRRARV--GLKN---PNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDM 597 (848)
Q Consensus 523 ~~l~~~l~~~vigq~~~~~~l~~~~~~~~~--~~~~---~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~ 597 (848)
..+.+.+.+.++||+.+++.+..++..... ++.. +..+..++||+||||||||++|+++|+.+ +.+++.++|
T Consensus 7 ~~l~~~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l---~~~~~~i~~ 83 (310)
T 1ofh_A 7 REIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA---NAPFIKVEA 83 (310)
T ss_dssp HHHHHHHHTTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH---TCCEEEEEG
T ss_pred HHHHHHHhhhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh---CCCEEEEcc
Confidence 456678888999999999999988876321 1110 01122469999999999999999999998 678999999
Q ss_pred cccccccchhcccCCCCCCcccccccchhHHHHc--------CCCeEEEEcCCCcCChHH------------HHHHHhhh
Q 003094 598 SEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRR--------RPYTVVLFDEIEKAHPDV------------FNMMLQIL 657 (848)
Q Consensus 598 ~~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~--------~~~~Vl~lDEid~l~~~~------------~~~Ll~~l 657 (848)
+.+... +|+|......+.+.... .+++||||||+|++++.. ++.|+++|
T Consensus 84 ~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~l 152 (310)
T 1ofh_A 84 TKFTEV-----------GYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLV 152 (310)
T ss_dssp GGGSSC-----------CSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHH
T ss_pred hhcccC-----------CccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHh
Confidence 887432 35554433333333322 236899999999998765 99999999
Q ss_pred cCcEEEcCCCceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEc
Q 003094 658 EDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVF 737 (848)
Q Consensus 658 e~g~~~~~~g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f 737 (848)
+++.+....+ ..+..+++||+++|..... ...++|+|++||+.++.|
T Consensus 153 e~~~~~~~~~-~~~~~~~~~i~~~~~~~~~--------------------------------~~~l~~~l~~R~~~~i~~ 199 (310)
T 1ofh_A 153 EGSTVSTKHG-MVKTDHILFIASGAFQVAR--------------------------------PSDLIPELQGRLPIRVEL 199 (310)
T ss_dssp HCCEEEETTE-EEECTTCEEEEEECCSSSC--------------------------------GGGSCHHHHHTCCEEEEC
T ss_pred cCCeEecccc-cccCCcEEEEEcCCcccCC--------------------------------cccCCHHHHhhCCceEEc
Confidence 9987665444 4566788999997643210 013679999999988999
Q ss_pred CCCCHHHHHHHHH----HHHHHHHHHHhcCCCeEeecHHHHHHHHHccCC-----CCCCchHHHHHHHHHHHHHHHHHHH
Q 003094 738 RQLTKLEVKEIAD----IMLKEVFDRLKTKDIELQVTERFRERVVEEGYN-----PSYGARPLRRAIMRLLEDSMAEKML 808 (848)
Q Consensus 738 ~~l~~~el~~I~~----~~l~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~-----~~~g~r~L~~~i~~~l~~~l~~~~l 808 (848)
+||+.+++.+|+. .++.++...+...+..+.++++++++|+..+|. +.+|+|.+.+.+++++.+...+.
T Consensus 200 ~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~~~~~-- 277 (310)
T 1ofh_A 200 TALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSA-- 277 (310)
T ss_dssp CCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHSHHHHHHG--
T ss_pred CCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhcccccccCcHHHHHHHHHHHHhhhcCC--
Confidence 9999999999998 566666666666777889999999999996553 36899999999998887765443
Q ss_pred ccccCCCCEEEEEEcC
Q 003094 809 AREIKEGDSVIVDVDS 824 (848)
Q Consensus 809 ~~~~~~~~~~~v~~~~ 824 (848)
....+.++.|+.+.
T Consensus 278 --~~~~~~~~~i~~~~ 291 (310)
T 1ofh_A 278 --SDMNGQTVNIDAAY 291 (310)
T ss_dssp --GGCTTCEEEECHHH
T ss_pred --ccccCCEEEEeeHH
Confidence 23456777776553
No 18
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.89 E-value=2.3e-22 Score=216.64 Aligned_cols=228 Identities=20% Similarity=0.260 Sum_probs=178.0
Q ss_pred ccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhccc
Q 003094 531 KRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLI 610 (848)
Q Consensus 531 ~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~ 610 (848)
+.++|++.++..+...+..... ...++||+||||||||++|++||+.+...+.+|+.+||+.+......+.++
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~-------~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~~lf 74 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAP-------SDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESELF 74 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCS-------TTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHHHHT
T ss_pred CCcEECCHHHHHHHHHHHHHhC-------CCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHHHhc
Confidence 4689999999999998887621 123599999999999999999999887778899999999987766677888
Q ss_pred CCCCCC-cccccccchhHHHHcCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCchhhh
Q 003094 611 GSPPGY-VGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIE 689 (848)
Q Consensus 611 g~~~g~-~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~i~ 689 (848)
|...|. .|... ...+.+..+.+++||||||+.++++.|..|+++|+++.+...++......+++||++||.....
T Consensus 75 g~~~g~~tg~~~--~~~g~~~~a~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~~-- 150 (304)
T 1ojl_A 75 GHEKGAFTGADK--RREGRFVEADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAE-- 150 (304)
T ss_dssp CCCSSCCC---C--CCCCHHHHHTTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHHH--
T ss_pred CccccccCchhh--hhcCHHHhcCCCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccHHH--
Confidence 876542 23221 1223344456789999999999999999999999999887766665556789999999854220
Q ss_pred ccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeE-EEcCCCC--HHHHHHHHHHHHHHHHHHHhcCCCe
Q 003094 690 KGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEM-IVFRQLT--KLEVKEIADIMLKEVFDRLKTKDIE 766 (848)
Q Consensus 690 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~-i~f~~l~--~~el~~I~~~~l~~~~~~~~~~~~~ 766 (848)
.+ -...|+++|++||+.+ |.++|++ .+|+..++..++.++...+... .
T Consensus 151 ------------------------~v---~~g~fr~~L~~Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~--~ 201 (304)
T 1ojl_A 151 ------------------------EV---SAGRFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKV--V 201 (304)
T ss_dssp ------------------------HH---HHTSSCHHHHHHHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCC--C
T ss_pred ------------------------HH---HhCCcHHHHHhhcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccC--c
Confidence 01 1235899999999554 8899998 6899999999998877665432 2
Q ss_pred EeecHHHHHHHHHccCCCCCCchHHHHHHHHHHH
Q 003094 767 LQVTERFRERVVEEGYNPSYGARPLRRAIMRLLE 800 (848)
Q Consensus 767 l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~l~ 800 (848)
..+++++++.|.. |.|++|.|+|++.+++++.
T Consensus 202 ~~~s~~a~~~L~~--~~wpGnvReL~~~l~~~~~ 233 (304)
T 1ojl_A 202 KGFTPQAMDLLIH--YDWPGNIRELENAIERAVV 233 (304)
T ss_dssp CCBCHHHHHHHHH--CCCSSHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHc--CCCCCCHHHHHHHHHHHHH
Confidence 4589999999999 8899999999999998765
No 19
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.88 E-value=3.3e-21 Score=214.67 Aligned_cols=228 Identities=18% Similarity=0.250 Sum_probs=184.6
Q ss_pred ccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhccc
Q 003094 531 KRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLI 610 (848)
Q Consensus 531 ~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~ 610 (848)
..++|++..+..+.+.+..... ...+++++|++||||+++|++++....+.+.+|+.+||+.+......+.||
T Consensus 137 ~~~ig~s~~m~~l~~~i~~~a~-------~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elf 209 (387)
T 1ny5_A 137 EEYVFESPKMKEILEKIKKISC-------AECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELF 209 (387)
T ss_dssp CCCCCCSHHHHHHHHHHHHHTT-------CCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHH
T ss_pred hhhhhccHHhhHHHHHHHHhcC-------CCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhc
Confidence 3577788888888887776421 123489999999999999999999987778999999999998888888999
Q ss_pred CCCCC-CcccccccchhHHHHcCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCchhhh
Q 003094 611 GSPPG-YVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIE 689 (848)
Q Consensus 611 g~~~g-~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~i~ 689 (848)
|...| +.|... .-.+.+..+.+++||||||+.+++++|..|+++|+++++...++......++++|++||......
T Consensus 210 g~~~g~~tga~~--~~~g~~~~a~~gtlfldei~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~- 286 (387)
T 1ny5_A 210 GYEKGAFTGAVS--SKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKEL- 286 (387)
T ss_dssp CBCTTSSTTCCS--CBCCHHHHTTTSEEEEESGGGCCHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHHHH-
T ss_pred CCCCCCCCCccc--ccCCceeeCCCcEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCCHHHH-
Confidence 98655 333321 12345666788999999999999999999999999999998888877778999999999544311
Q ss_pred ccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCe-EEEcCCCCH--HHHHHHHHHHHHHHHHHHhcCCCe
Q 003094 690 KGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDE-MIVFRQLTK--LEVKEIADIMLKEVFDRLKTKDIE 766 (848)
Q Consensus 690 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~-~i~f~~l~~--~el~~I~~~~l~~~~~~~~~~~~~ 766 (848)
--.+.|+++|+.|+.. .|.+|||.+ +|+..++.+++.++..++... .
T Consensus 287 ----------------------------~~~g~fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~--~ 336 (387)
T 1ny5_A 287 ----------------------------VKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKE--V 336 (387)
T ss_dssp ----------------------------HHTTSSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCC--C
T ss_pred ----------------------------HHcCCccHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCC--C
Confidence 1124589999999965 488999965 999999999999988776432 2
Q ss_pred EeecHHHHHHHHHccCCCCCCchHHHHHHHHHHH
Q 003094 767 LQVTERFRERVVEEGYNPSYGARPLRRAIMRLLE 800 (848)
Q Consensus 767 l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~l~ 800 (848)
..+++++++.|.. |+|++|.|+|+++|++.+.
T Consensus 337 ~~~~~~a~~~l~~--~~wpGNvreL~~~i~~~~~ 368 (387)
T 1ny5_A 337 EGFTKSAQELLLS--YPWYGNVRELKNVIERAVL 368 (387)
T ss_dssp CEECHHHHHHHHH--SCCTTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHh--CCCCcHHHHHHHHHHHHHH
Confidence 3599999999999 9999999999999998775
No 20
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.87 E-value=1.1e-21 Score=207.77 Aligned_cols=230 Identities=20% Similarity=0.268 Sum_probs=168.1
Q ss_pred hccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhcc
Q 003094 530 HKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 609 (848)
Q Consensus 530 ~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l 609 (848)
++.++|++.++..+.+.+...... ..++||+||||||||++|+++++.+...+.+++.+||+.+......+.+
T Consensus 5 f~~~ig~~~~~~~~~~~~~~~~~~-------~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~~~~~l 77 (265)
T 2bjv_A 5 KDNLLGEANSFLEVLEQVSHLAPL-------DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSEL 77 (265)
T ss_dssp -----CCCHHHHHHHHHHHHHTTS-------CSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHHHHHHH
T ss_pred cccceeCCHHHHHHHHHHHHHhCC-------CCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhHHHHHh
Confidence 567899999999998888765321 1359999999999999999999988666789999999998765555677
Q ss_pred cCCCCC-CcccccccchhHHHHcCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCchhh
Q 003094 610 IGSPPG-YVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVI 688 (848)
Q Consensus 610 ~g~~~g-~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~i 688 (848)
+|...+ +.|... ...+.+..+.+++||||||+.+++++|+.|+++|+++.+...++......++.+|+|||......
T Consensus 78 ~g~~~~~~~g~~~--~~~~~l~~a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~~~~~ 155 (265)
T 2bjv_A 78 FGHEAGAFTGAQK--RHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAM 155 (265)
T ss_dssp HCCC-----------CCCCHHHHTTTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSCHHHH
T ss_pred cCCcccccccccc--cccchhhhcCCcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcCHHHH
Confidence 776443 233221 11233445667899999999999999999999999998876666555557889999998543210
Q ss_pred hccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCe-EEEcCCCCH--HHHHHHHHHHHHHHHHHHhcCCC
Q 003094 689 EKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDE-MIVFRQLTK--LEVKEIADIMLKEVFDRLKTKDI 765 (848)
Q Consensus 689 ~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~-~i~f~~l~~--~el~~I~~~~l~~~~~~~~~~~~ 765 (848)
+ -...|+++|++||+. .+.++|++. +|+..++..++.++....... .
T Consensus 156 --------------------------~---~~~~~~~~L~~Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~-~ 205 (265)
T 2bjv_A 156 --------------------------V---NEGTFRADLLDALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLP-L 205 (265)
T ss_dssp --------------------------H---HHTSSCHHHHHHHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCS-S
T ss_pred --------------------------H---HcCCccHHHHHhhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCC-c
Confidence 0 123588999999964 589999976 899999999988776554221 1
Q ss_pred eEeecHHHHHHHHHccCCCCCCchHHHHHHHHHHH
Q 003094 766 ELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLE 800 (848)
Q Consensus 766 ~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~l~ 800 (848)
...++++++++|.. |.|++|.|+|++.+++++.
T Consensus 206 ~~~~~~~a~~~L~~--~~~~gn~reL~~~l~~~~~ 238 (265)
T 2bjv_A 206 FPGFTERARETLLN--YRWPGNIRELKNVVERSVY 238 (265)
T ss_dssp CCCBCHHHHHHHHH--SCCTTHHHHHHHHHHHHHH
T ss_pred ccCcCHHHHHHHHh--CCCCCCHHHHHHHHHHHHH
Confidence 12589999999998 8889999999999997664
No 21
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.87 E-value=4.4e-22 Score=199.00 Aligned_cols=192 Identities=66% Similarity=1.091 Sum_probs=162.4
Q ss_pred ccchHHhhhhhhhhhhcCCCCCccCChHHHHHHHHHhccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceE
Q 003094 177 MPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKV 256 (848)
Q Consensus 177 ~~~l~~~~~~l~~~~~~~~ld~iiG~~~~~~~l~~~l~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v 256 (848)
.+.|++++.+|.+++++..+++++|++++++++.+.+....+.+++|+||||||||++++.+++.+.....+....+.++
T Consensus 2 ~~~l~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~ 81 (195)
T 1jbk_A 2 MQALKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRV 81 (195)
T ss_dssp CHHHHHHEEEHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEE
T ss_pred chHHHHHhHHHHHHHhhccccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcE
Confidence 46788999999999999999999999999999999999888889999999999999999999999977666655567889
Q ss_pred EEEeCCcccccccccchHHHHHHHHHHHHHh-CCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCCceEEEEeeChH
Q 003094 257 ITLDMGLLVAGTKYRGEFEERLKKLMEEIKQ-SDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATTLD 335 (848)
Q Consensus 257 ~~~~~~~l~~~~~~~g~~~~~l~~l~~~~~~-~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~atn~~ 335 (848)
+.+++..+..+..+.+.....+..++..+.. ..+.||||||+|.+.+.+......++.+.|+.+++.+++.+|++|+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~ 161 (195)
T 1jbk_A 82 LALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLD 161 (195)
T ss_dssp EEECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHTTSCCEEEEECHH
T ss_pred EEeeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhccCCeEEEEeCCHH
Confidence 9999888776667778888888888887754 457899999999997654444445567888888888899999999999
Q ss_pred HHHhhhhcChhhhcccCCCcCCCCCHHHHHHHH
Q 003094 336 EYRKHIEKDPALERRFQPVKVPEPSVDETIQIL 368 (848)
Q Consensus 336 ~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~Il 368 (848)
++.....+++++.+||..+.|+.|+.+++.+|+
T Consensus 162 ~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 162 EYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HHHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred HHHHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 877777889999999998999999999998765
No 22
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.86 E-value=2e-20 Score=213.71 Aligned_cols=173 Identities=20% Similarity=0.273 Sum_probs=111.4
Q ss_pred hhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcC-------CCCceEEecccccc
Q 003094 529 LHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFG-------SEEAMIRLDMSEFM 601 (848)
Q Consensus 529 l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~-------~~~~~i~i~~~~~~ 601 (848)
-.+.++|++..++.+...+.+ +...++||+||||||||++|+++|+.+.+ .+.+++.+||+.
T Consensus 178 ~ld~iiGr~~~i~~l~~~l~r---------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~-- 246 (468)
T 3pxg_A 178 SLDPVIGRSKEIQRVIEVLSR---------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGT-- 246 (468)
T ss_dssp CSCCCCCCHHHHHHHHHHHHC---------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC------
T ss_pred CCCCccCcHHHHHHHHHHHhc---------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCc--
Confidence 356799999999998887763 12246899999999999999999999744 245677777761
Q ss_pred cccchhcccCCCCCCcccccc--cchhHHHHcCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecCCeEEEE
Q 003094 602 ERHTVSKLIGSPPGYVGYTEG--GQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIM 679 (848)
Q Consensus 602 ~~~~~~~l~g~~~g~~g~~~~--~~l~~~~~~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~ 679 (848)
.|.|..+. ..+++.+....++||||| ...++++.|++.|+.| ++++|+
T Consensus 247 -------------~~~g~~e~~~~~~~~~~~~~~~~iLfiD----~~~~a~~~L~~~L~~g-------------~v~vI~ 296 (468)
T 3pxg_A 247 -------------KYRGEFEDRLKKVMDEIRQAGNIILFID----AAIDASNILKPSLARG-------------ELQCIG 296 (468)
T ss_dssp -------------------CTTHHHHHHHHHTCCCCEEEEC----C--------CCCTTSS-------------SCEEEE
T ss_pred -------------cccchHHHHHHHHHHHHHhcCCeEEEEe----CchhHHHHHHHhhcCC-------------CEEEEe
Confidence 14443322 356666777788999999 6778999999999874 456888
Q ss_pred ecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHHHHHHHHHHH
Q 003094 680 TSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDR 759 (848)
Q Consensus 680 tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~~~l~~~~~~ 759 (848)
+||...- .+ .-.++++|.+|| .+|.|++|+.++...|+..++..+..
T Consensus 297 at~~~e~-----------------------------~~--~~~~~~al~~Rf-~~i~v~~p~~e~~~~iL~~~~~~~~~- 343 (468)
T 3pxg_A 297 ATTLDEY-----------------------------RK--YIEKDAALERRF-QPIQVDQPSVDESIQILQGLRDRYEA- 343 (468)
T ss_dssp ECCTTTT-----------------------------HH--HHTTCSHHHHSE-EEEECCCCCHHHHHHHHHHTTTTSGG-
T ss_pred cCCHHHH-----------------------------HH--HhhcCHHHHHhC-ccceeCCCCHHHHHHHHHHHHHHHHH-
Confidence 8874331 00 002568999999 67999999999999999866544211
Q ss_pred HhcCCCeEeecHHHHHHHHH
Q 003094 760 LKTKDIELQVTERFRERVVE 779 (848)
Q Consensus 760 ~~~~~~~l~i~~~a~~~l~~ 779 (848)
...+.++++++..++.
T Consensus 344 ----~~~~~i~~~al~~l~~ 359 (468)
T 3pxg_A 344 ----HHRVSITDDAIEAAVK 359 (468)
T ss_dssp ----GSSCSCCHHHHHHHHH
T ss_pred ----hcCCCCCHHHHHHHHH
Confidence 1223456666665554
No 23
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.86 E-value=7.3e-21 Score=207.16 Aligned_cols=202 Identities=22% Similarity=0.319 Sum_probs=162.2
Q ss_pred hhhcCCCCCccCChHHHHHHHHHhc------------cCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEE
Q 003094 190 LAEEGKLDPVVGRQPQIERVVQILG------------RRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVI 257 (848)
Q Consensus 190 ~~~~~~ld~iiG~~~~~~~l~~~l~------------~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~ 257 (848)
...+.+|++++|+++.+++|.+.+. ..++.++||+||||||||++|+++|+.+ +.+++
T Consensus 11 ~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~----------~~~~~ 80 (322)
T 3eie_A 11 EKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA----------NSTFF 80 (322)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH----------TCEEE
T ss_pred cCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH----------CCCEE
Confidence 3445679999999999999988761 2346789999999999999999999998 57899
Q ss_pred EEeCCcccccccccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCC---CchHHHHHHHhhhh-----cCCceEEE
Q 003094 258 TLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAA---EGAIDAANILKPSL-----ARGELQCI 329 (848)
Q Consensus 258 ~~~~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~---~~~~~~~~~L~~~l-----~~~~v~vI 329 (848)
.++++.+. .++.|+.+..++.+|..+....|+||||||+|.+.+.+.. .....+.+.+...+ ....++||
T Consensus 81 ~v~~~~l~--~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi 158 (322)
T 3eie_A 81 SVSSSDLV--SKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVL 158 (322)
T ss_dssp EEEHHHHH--TTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEE
T ss_pred EEchHHHh--hcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEE
Confidence 99998887 5688999999999999999999999999999999865322 22334445554444 35679999
Q ss_pred EeeChHHHHhhhhcChhhhcccC-CCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCChhhH
Q 003094 330 GATTLDEYRKHIEKDPALERRFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKA 408 (848)
Q Consensus 330 ~atn~~~~~~~~~~d~al~~Rf~-~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~p~~a 408 (848)
++||.++ .+++++.+||. .+.++.|+.+++.+|++.++. .....+++..+..++..+.+|.+. +.
T Consensus 159 ~atn~~~-----~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~----~~~~~~~~~~l~~la~~t~g~sg~-----di 224 (322)
T 3eie_A 159 GATNIPW-----QLDSAIRRRFERRIYIPLPDLAARTTMFEINVG----DTPCVLTKEDYRTLGAMTEGYSGS-----DI 224 (322)
T ss_dssp EEESCGG-----GSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHT----TCCCCCCHHHHHHHHHTTTTCCHH-----HH
T ss_pred EecCChh-----hCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhc----cCCCCCCHHHHHHHHHHcCCCCHH-----HH
Confidence 9999987 68999999997 889999999999999998776 345567889999999998887543 55
Q ss_pred HHHHHHHhh
Q 003094 409 IDLIDEAGS 417 (848)
Q Consensus 409 ~~ll~~a~~ 417 (848)
..++.+|..
T Consensus 225 ~~l~~~a~~ 233 (322)
T 3eie_A 225 AVVVKDALM 233 (322)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHH
Confidence 666666643
No 24
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.85 E-value=8e-21 Score=209.88 Aligned_cols=226 Identities=21% Similarity=0.291 Sum_probs=181.6
Q ss_pred cccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhcccC
Q 003094 532 RVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIG 611 (848)
Q Consensus 532 ~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g 611 (848)
.++|++..+..+...+...... ..+++++|++||||+.+|++++...... ..|+.+||+.+.+....+.|||
T Consensus 130 ~~ig~s~~~~~~~~~~~~~a~~-------~~~vli~GesGtGKe~lAr~ih~~s~r~-~~fv~vnc~~~~~~~~~~~lfg 201 (368)
T 3dzd_A 130 EFVGEHPKILEIKRLIPKIAKS-------KAPVLITGESGTGKEIVARLIHRYSGRK-GAFVDLNCASIPQELAESELFG 201 (368)
T ss_dssp CCCCCSHHHHHHHHHHHHHHTS-------CSCEEEECCTTSSHHHHHHHHHHHHCCC-SCEEEEESSSSCTTTHHHHHHE
T ss_pred cccccchHHHHHHhhhhhhhcc-------chhheEEeCCCchHHHHHHHHHHhcccc-CCcEEEEcccCChHHHHHHhcC
Confidence 5788888888888877765422 1248999999999999999999987544 3499999999988888889999
Q ss_pred CCCCC-cccccccchhHHHHcCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCchhhhc
Q 003094 612 SPPGY-VGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEK 690 (848)
Q Consensus 612 ~~~g~-~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~i~~ 690 (848)
+..|. .|... .-.+.+..+.+++||||||+.+++..|..|+++|++|.+...++......++++|++||.....
T Consensus 202 ~~~g~~tga~~--~~~g~~~~a~~gtlfldei~~l~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~--- 276 (368)
T 3dzd_A 202 HEKGAFTGALT--RKKGKLELADQGTLFLDEVGELDQRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNLEE--- 276 (368)
T ss_dssp ECSCSSSSCCC--CEECHHHHTTTSEEEEETGGGSCHHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSCHHH---
T ss_pred ccccccCCccc--ccCChHhhcCCCeEEecChhhCCHHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCCHHH---
Confidence 86553 33221 1223455677899999999999999999999999999999888877777899999999844321
Q ss_pred cCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeE-EEcCCCCH--HHHHHHHHHHHHHHHHHHhcCCCeE
Q 003094 691 GGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEM-IVFRQLTK--LEVKEIADIMLKEVFDRLKTKDIEL 767 (848)
Q Consensus 691 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~-i~f~~l~~--~el~~I~~~~l~~~~~~~~~~~~~l 767 (848)
.-....|+++|++|+..+ |.+|||.+ +|+..++.+++.++..++... ..
T Consensus 277 --------------------------~v~~g~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~--~~ 328 (368)
T 3dzd_A 277 --------------------------EIKKGNFREDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKN--CF 328 (368)
T ss_dssp --------------------------HHHTTSSCHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCC--CC
T ss_pred --------------------------HHHcCCccHHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCC--CC
Confidence 112346999999999664 88999987 899999999999988776433 24
Q ss_pred eecHHHHHHHHHccCCCCCCchHHHHHHHHHHH
Q 003094 768 QVTERFRERVVEEGYNPSYGARPLRRAIMRLLE 800 (848)
Q Consensus 768 ~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~l~ 800 (848)
.+++++++.|.. |+|++|.|+|+++|++++.
T Consensus 329 ~~~~~a~~~L~~--~~wpGNvreL~n~i~~~~~ 359 (368)
T 3dzd_A 329 ELSEETKEYLMK--QEWKGNVRELKNLIERAVI 359 (368)
T ss_dssp CBCHHHHHHHHT--CCCTTHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHh--CCCCcHHHHHHHHHHHHHH
Confidence 599999999999 9999999999999998764
No 25
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.85 E-value=2.2e-20 Score=203.02 Aligned_cols=200 Identities=22% Similarity=0.304 Sum_probs=161.0
Q ss_pred cCCCCCccCChHHHHHHHHHhc------------cCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEe
Q 003094 193 EGKLDPVVGRQPQIERVVQILG------------RRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLD 260 (848)
Q Consensus 193 ~~~ld~iiG~~~~~~~l~~~l~------------~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~ 260 (848)
+.++++++|.++.++.|.+.+. ..+++++||+||||||||++|+++|+.+. +.+++.++
T Consensus 8 ~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~---------~~~~~~i~ 78 (322)
T 1xwi_A 8 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN---------NSTFFSIS 78 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT---------SCEEEEEE
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC---------CCcEEEEE
Confidence 4578999999999999887652 24557899999999999999999999872 46789999
Q ss_pred CCcccccccccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCCc---hHHHHHHHhhhhc-----CCceEEEEee
Q 003094 261 MGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEG---AIDAANILKPSLA-----RGELQCIGAT 332 (848)
Q Consensus 261 ~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~~---~~~~~~~L~~~l~-----~~~v~vI~at 332 (848)
++.+. .++.|+.+..++.+|..++...++||||||+|.+.+.+.... ...+.+.|...++ ...++||++|
T Consensus 79 ~~~l~--~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~at 156 (322)
T 1xwi_A 79 SSDLV--SKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGAT 156 (322)
T ss_dssp CCSSC--CSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEE
T ss_pred hHHHH--hhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEec
Confidence 98887 567889999999999999988999999999999986644322 2234444444442 4679999999
Q ss_pred ChHHHHhhhhcChhhhcccC-CCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCChhhHHHH
Q 003094 333 TLDEYRKHIEKDPALERRFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDL 411 (848)
Q Consensus 333 n~~~~~~~~~~d~al~~Rf~-~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~p~~a~~l 411 (848)
|.++ .+|+++.|||+ .+.++.|+.+++.+|++.++.+ ....+++..+..+++.+.+|.+. +...+
T Consensus 157 n~~~-----~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~----~~~~l~~~~l~~la~~t~G~sga-----dl~~l 222 (322)
T 1xwi_A 157 NIPW-----VLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGT----TQNSLTEADFRELGRKTDGYSGA-----DISII 222 (322)
T ss_dssp SCTT-----TSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTT----CCBCCCHHHHHHHHHTCTTCCHH-----HHHHH
T ss_pred CCcc-----cCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHcCCCCHH-----HHHHH
Confidence 9987 68999999997 8999999999999999987763 34556888999999999887654 55666
Q ss_pred HHHHhh
Q 003094 412 IDEAGS 417 (848)
Q Consensus 412 l~~a~~ 417 (848)
+++|..
T Consensus 223 ~~~A~~ 228 (322)
T 1xwi_A 223 VRDALM 228 (322)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 666653
No 26
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.85 E-value=3.4e-21 Score=191.70 Aligned_cols=184 Identities=63% Similarity=1.082 Sum_probs=157.0
Q ss_pred ccchHHhhhhhhhhhhcCCCCCccCChHHHHHHHHHhccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceE
Q 003094 177 MPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKV 256 (848)
Q Consensus 177 ~~~l~~~~~~l~~~~~~~~ld~iiG~~~~~~~l~~~l~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v 256 (848)
.+.|.+|+.+|.+++++..+++++|++++++.+.+.+......+++|+||||||||++++.+++.+.....+....+.++
T Consensus 2 ~~~l~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~ 81 (187)
T 2p65_A 2 YQALEKYSRDLTALARAGKLDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKL 81 (187)
T ss_dssp -CCTTTTEEEHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEE
T ss_pred chHHHHHHHHHHHHHhccccchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeE
Confidence 46788999999999999999999999999999999998888889999999999999999999999987666666668889
Q ss_pred EEEeCCcccccccccchHHHHHHHHHHHHHhC-CCeEEEEcccchhhhCCC-CCchHHHHHHHhhhhcCCceEEEEeeCh
Q 003094 257 ITLDMGLLVAGTKYRGEFEERLKKLMEEIKQS-DEIILFIDEVHTLIGAGA-AEGAIDAANILKPSLARGELQCIGATTL 334 (848)
Q Consensus 257 ~~~~~~~l~~~~~~~g~~~~~l~~l~~~~~~~-~~~IL~IDEid~l~~~~~-~~~~~~~~~~L~~~l~~~~v~vI~atn~ 334 (848)
+.+++..+..+..+.+.....+..++..+... .+.+|||||+|.+.+.+. .....++.+.|...++.+.+.+|+++|.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~ 161 (187)
T 2p65_A 82 VSLDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLARGELRCIGATTV 161 (187)
T ss_dssp EEECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHHTTCSCEEEEECH
T ss_pred EEEeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccccchHHHHHHHHHHhcCCeeEEEecCH
Confidence 99988877665666777778888888887665 678999999999975543 3334567888888888899999999999
Q ss_pred HHHHhhhhcChhhhcccCCCcCCCCC
Q 003094 335 DEYRKHIEKDPALERRFQPVKVPEPS 360 (848)
Q Consensus 335 ~~~~~~~~~d~al~~Rf~~i~~~~p~ 360 (848)
.++.....+++++.+||..+.++.|+
T Consensus 162 ~~~~~~~~~~~~l~~R~~~i~i~~p~ 187 (187)
T 2p65_A 162 SEYRQFIEKDKALERRFQQILVEQPS 187 (187)
T ss_dssp HHHHHHTTTCHHHHHHEEEEECCSCC
T ss_pred HHHHHHHhccHHHHHhcCcccCCCCC
Confidence 98766667899999999989999885
No 27
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.84 E-value=2.5e-20 Score=205.36 Aligned_cols=207 Identities=21% Similarity=0.307 Sum_probs=157.0
Q ss_pred hhhhhhhcCCCCCccCChHHHHHHHHHhc------------cCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCC
Q 003094 186 NLTKLAEEGKLDPVVGRQPQIERVVQILG------------RRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEG 253 (848)
Q Consensus 186 ~l~~~~~~~~ld~iiG~~~~~~~l~~~l~------------~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~ 253 (848)
.+.....+..|++++|+++.++.|.+.+. ..++.++||+||||||||++|+++|+.+ +
T Consensus 40 ~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~----------~ 109 (355)
T 2qp9_X 40 AILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA----------N 109 (355)
T ss_dssp -------CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH----------T
T ss_pred hhcccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh----------C
Confidence 34555666789999999999999888762 2456789999999999999999999998 5
Q ss_pred ceEEEEeCCcccccccccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCC---chHHHHHHHhhhhc-----CCc
Q 003094 254 KKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAE---GAIDAANILKPSLA-----RGE 325 (848)
Q Consensus 254 ~~v~~~~~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~---~~~~~~~~L~~~l~-----~~~ 325 (848)
.+++.+++..+. .++.|+.+..++.+|..+....++||||||+|.+.+.+... ....+.+.|...++ ...
T Consensus 110 ~~~~~v~~~~l~--~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 187 (355)
T 2qp9_X 110 STFFSVSSSDLV--SKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQG 187 (355)
T ss_dssp CEEEEEEHHHHH--SCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CC
T ss_pred CCEEEeeHHHHh--hhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCC
Confidence 789999988877 45778888999999999988889999999999997653221 12334555555553 467
Q ss_pred eEEEEeeChHHHHhhhhcChhhhcccC-CCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCC
Q 003094 326 LQCIGATTLDEYRKHIEKDPALERRFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFL 404 (848)
Q Consensus 326 v~vI~atn~~~~~~~~~~d~al~~Rf~-~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~ 404 (848)
++||++||.++ .+++++.|||+ .+.++.|+.+++.+||+.++.+ ....+++..+..++..+.+|.+
T Consensus 188 v~vI~atn~~~-----~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~----~~~~~~~~~l~~la~~t~G~sg---- 254 (355)
T 2qp9_X 188 VLVLGATNIPW-----QLDSAIRRRFERRIYIPLPDLAARTTMFEINVGD----TPSVLTKEDYRTLGAMTEGYSG---- 254 (355)
T ss_dssp EEEEEEESCGG-----GSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTT----SCBCCCHHHHHHHHHHTTTCCH----
T ss_pred eEEEeecCCcc-----cCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhh----CCCCCCHHHHHHHHHHcCCCCH----
Confidence 99999999987 68999999997 8999999999999999987763 3445688899999999988754
Q ss_pred hhhHHHHHHHHhhH
Q 003094 405 PDKAIDLIDEAGSR 418 (848)
Q Consensus 405 p~~a~~ll~~a~~~ 418 (848)
.+...++++|...
T Consensus 255 -~dl~~l~~~A~~~ 267 (355)
T 2qp9_X 255 -SDIAVVVKDALMQ 267 (355)
T ss_dssp -HHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHH
Confidence 3566666666543
No 28
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.84 E-value=2.8e-20 Score=215.93 Aligned_cols=258 Identities=22% Similarity=0.321 Sum_probs=173.5
Q ss_pred HHHHHHhhCCCCcccCcchHHHHHHHHHHhhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHH
Q 003094 500 QHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAK 579 (848)
Q Consensus 500 ~~~~~~~~g~p~~~~~~~~~~~l~~l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~ 579 (848)
...+..++.+|......+. ..+.+.++.+.++++|++++++.+...+......... +..+++|+||||||||++|+
T Consensus 51 ~~~l~~~~~lp~~~~~~~~-~~~~~~~~~l~~di~G~~~vk~~i~~~~~l~~~~~~~---~g~~vll~Gp~GtGKTtlar 126 (543)
T 3m6a_A 51 RNYIDWLVALPWTDETDDK-LDLKEAGRLLDEEHHGLEKVKERILEYLAVQKLTKSL---KGPILCLAGPPGVGKTSLAK 126 (543)
T ss_dssp HHHHHHHHHSCSSCCCCCC-CCTTTGGGTHHHHCSSCHHHHHHHHHHHHHHHHSSSC---CSCEEEEESSSSSSHHHHHH
T ss_pred HHHHHHHhcCCCCcccccc-ccHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccC---CCCEEEEECCCCCCHHHHHH
Confidence 3444455566655443322 1234556678889999999999998777655544333 33469999999999999999
Q ss_pred HHHHHhcCCCCceEEecccccccccchhcccCCCCCCcccccccchhHHHHcC--CCeEEEEcCCCcCChH----HHHHH
Q 003094 580 ALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRR--PYTVVLFDEIEKAHPD----VFNMM 653 (848)
Q Consensus 580 ~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~--~~~Vl~lDEid~l~~~----~~~~L 653 (848)
+||..+ +.+++.++|+.+.. .+.+.|....|+|...+ .+...+..+ .++|+||||||+++++ .++.|
T Consensus 127 ~ia~~l---~~~~~~i~~~~~~~---~~~~~g~~~~~ig~~~~-~~~~~~~~a~~~~~vl~lDEid~l~~~~~~~~~~~L 199 (543)
T 3m6a_A 127 SIAKSL---GRKFVRISLGGVRD---ESEIRGHRRTYVGAMPG-RIIQGMKKAGKLNPVFLLDEIDKMSSDFRGDPSSAM 199 (543)
T ss_dssp HHHHHH---TCEEEEECCCC------------------------CHHHHHHTTCSSSEEEEEEESSSCC---------CC
T ss_pred HHHHhc---CCCeEEEEecccch---hhhhhhHHHHHhccCch-HHHHHHHHhhccCCEEEEhhhhhhhhhhccCHHHHH
Confidence 999998 67899999987643 34555665567776443 333344443 4569999999999987 56999
Q ss_pred HhhhcCcE---EEc-CCCceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhh
Q 003094 654 LQILEDGR---LTD-SKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLN 729 (848)
Q Consensus 654 l~~le~g~---~~~-~~g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~ 729 (848)
+++|+.++ +.+ ..+..+++.+++||+|||... .++|+|++
T Consensus 200 L~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~------------------------------------~l~~aL~~ 243 (543)
T 3m6a_A 200 LEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLA------------------------------------TIPGPLRD 243 (543)
T ss_dssp GGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTT------------------------------------TSCHHHHH
T ss_pred HHHHhhhhcceeecccCCeeecccceEEEeccCccc------------------------------------cCCHHHHh
Confidence 99998654 222 235566778999999999533 37799999
Q ss_pred ccCeEEEcCCCCHHHHHHHHHHHHHH-HHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHHHHHHHHHHHH
Q 003094 730 RLDEMIVFRQLTKLEVKEIADIMLKE-VFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSMAEK 806 (848)
Q Consensus 730 R~d~~i~f~~l~~~el~~I~~~~l~~-~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~l~~~l~~~ 806 (848)
|| .+|.|++|+.++..+|+..++.. ...........+.++++++..|+. .|.|+.|.|+|++.|++++...-...
T Consensus 244 R~-~vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~-~~~~~~~vR~L~~~i~~~~~~aa~~~ 319 (543)
T 3m6a_A 244 RM-EIINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIR-YYTREAGVRSLERQLAAICRKAAKAI 319 (543)
T ss_dssp HE-EEEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHH-HHCCCSSSHHHHHHHHHHHHHHHHHH
T ss_pred hc-ceeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHH-hCChhhchhHHHHHHHHHHHHHHHHH
Confidence 99 68999999999999999776633 333332223367899999999987 59999999999999999888765544
No 29
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.83 E-value=3.1e-20 Score=203.07 Aligned_cols=201 Identities=22% Similarity=0.338 Sum_probs=153.0
Q ss_pred HHhhccccChHHHHHHHHHHHHHH--------HccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEeccc
Q 003094 527 ETLHKRVIGQDEAVKAISRAIRRA--------RVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMS 598 (848)
Q Consensus 527 ~~l~~~vigq~~~~~~l~~~~~~~--------~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~ 598 (848)
+.-|++|.|.+++++.|.+.+... ..|+.+|+ .+|||||||||||++|+++|..+ +.+|+.++++
T Consensus 144 ~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~pr----GvLL~GPPGTGKTllAkAiA~e~---~~~f~~v~~s 216 (405)
T 4b4t_J 144 DSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPK----GVILYGPPGTGKTLLARAVAHHT---DCKFIRVSGA 216 (405)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCC----CEEEESCSSSSHHHHHHHHHHHH---TCEEEEEEGG
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCC----ceEEeCCCCCCHHHHHHHHHHhh---CCCceEEEhH
Confidence 345788999999999999888653 23555543 49999999999999999999998 8899999998
Q ss_pred ccccccchhcccCCCCCCcccccc--cchhHHHHcCCCeEEEEcCCCcCCh--------------HHHHHHHhhhcCcEE
Q 003094 599 EFMERHTVSKLIGSPPGYVGYTEG--GQLTEAVRRRPYTVVLFDEIEKAHP--------------DVFNMMLQILEDGRL 662 (848)
Q Consensus 599 ~~~~~~~~~~l~g~~~g~~g~~~~--~~l~~~~~~~~~~Vl~lDEid~l~~--------------~~~~~Ll~~le~g~~ 662 (848)
++... |+|.++. +.++..++...++||||||+|.+.+ .+++.||..|+...
T Consensus 217 ~l~sk------------~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~- 283 (405)
T 4b4t_J 217 ELVQK------------YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFE- 283 (405)
T ss_dssp GGSCS------------STTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTT-
T ss_pred Hhhcc------------ccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccC-
Confidence 87543 7777655 5678888888899999999998732 26778888887532
Q ss_pred EcCCCceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhh--ccCeEEEcCCC
Q 003094 663 TDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLN--RLDEMIVFRQL 740 (848)
Q Consensus 663 ~~~~g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~--R~d~~i~f~~l 740 (848)
...++++|+|||.... ++|+|+. |||..|.|+++
T Consensus 284 --------~~~~V~vIaATNrpd~------------------------------------LDpAllRpGRfD~~I~i~lP 319 (405)
T 4b4t_J 284 --------TSKNIKIIMATNRLDI------------------------------------LDPALLRPGRIDRKIEFPPP 319 (405)
T ss_dssp --------CCCCEEEEEEESCSSS------------------------------------SCHHHHSTTSSCCEEECCCC
T ss_pred --------CCCCeEEEeccCChhh------------------------------------CCHhHcCCCcCceEEEcCCc
Confidence 1257899999996553 6799986 99999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHHHHHHHHH
Q 003094 741 TKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSM 803 (848)
Q Consensus 741 ~~~el~~I~~~~l~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~l~~~l 803 (848)
+.++..+|++..+..+ ...-.++ ++.|+. ....|.+.+|+..+..+...++
T Consensus 320 d~~~R~~Il~~~~~~~-------~l~~dvd---l~~lA~--~t~G~SGADi~~l~~eA~~~Ai 370 (405)
T 4b4t_J 320 SVAARAEILRIHSRKM-------NLTRGIN---LRKVAE--KMNGCSGADVKGVCTEAGMYAL 370 (405)
T ss_dssp CHHHHHHHHHHHHTTS-------BCCSSCC---HHHHHH--HCCSCCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCC-------CCCccCC---HHHHHH--HCCCCCHHHHHHHHHHHHHHHH
Confidence 9999999997766431 1111122 456666 3445677889888877766554
No 30
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.83 E-value=6.3e-20 Score=205.19 Aligned_cols=206 Identities=23% Similarity=0.335 Sum_probs=157.4
Q ss_pred hhhhhhhhcCCCCCccCChHHHHHHHHHhc------------cCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCC
Q 003094 185 TNLTKLAEEGKLDPVVGRQPQIERVVQILG------------RRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIE 252 (848)
Q Consensus 185 ~~l~~~~~~~~ld~iiG~~~~~~~l~~~l~------------~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~ 252 (848)
..|.+.+++..|++++|++.+++.|.+.+. .....++||+||||||||++|+++|+.+
T Consensus 103 ~~~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~---------- 172 (389)
T 3vfd_A 103 NEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES---------- 172 (389)
T ss_dssp GTTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT----------
T ss_pred hhhhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh----------
Confidence 356667778889999999999999988762 2346889999999999999999999987
Q ss_pred CceEEEEeCCcccccccccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCC---chHHHHHHHhhhhc------C
Q 003094 253 GKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAE---GAIDAANILKPSLA------R 323 (848)
Q Consensus 253 ~~~v~~~~~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~---~~~~~~~~L~~~l~------~ 323 (848)
+.+++.++++.+. ..+.|+.+..+..+|..+....++||||||+|.++...... ....+++.|...++ .
T Consensus 173 ~~~~~~v~~~~l~--~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 250 (389)
T 3vfd_A 173 NATFFNISAASLT--SKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGD 250 (389)
T ss_dssp TCEEEEECSCCC---------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC----
T ss_pred cCcEEEeeHHHhh--ccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCC
Confidence 6789999998887 45778888899999999998889999999999997543321 23344555555443 4
Q ss_pred CceEEEEeeChHHHHhhhhcChhhhcccC-CCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccC
Q 003094 324 GELQCIGATTLDEYRKHIEKDPALERRFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDR 402 (848)
Q Consensus 324 ~~v~vI~atn~~~~~~~~~~d~al~~Rf~-~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~ 402 (848)
..++||++||..+ .+++++.+||. .+.|+.|+.+++.+||+.++.+ .+..++++.+..++..+.+|.+.
T Consensus 251 ~~v~vI~atn~~~-----~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~----~~~~l~~~~~~~la~~~~g~~~~- 320 (389)
T 3vfd_A 251 DRVLVMGATNRPQ-----ELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCK----QGSPLTQKELAQLARMTDGYSGS- 320 (389)
T ss_dssp -CEEEEEEESCGG-----GCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTT----SCCCSCHHHHHHHHHHTTTCCHH-
T ss_pred CCEEEEEecCCch-----hcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHHcCCCCHH-
Confidence 5699999999987 68999999997 7999999999999999987763 56778999999999988887543
Q ss_pred CChhhHHHHHHHHh
Q 003094 403 FLPDKAIDLIDEAG 416 (848)
Q Consensus 403 ~~p~~a~~ll~~a~ 416 (848)
....++..|.
T Consensus 321 ----~l~~L~~~a~ 330 (389)
T 3vfd_A 321 ----DLTALAKDAA 330 (389)
T ss_dssp ----HHHHHHHHHT
T ss_pred ----HHHHHHHHHH
Confidence 3445555443
No 31
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.83 E-value=7.4e-20 Score=198.09 Aligned_cols=222 Identities=21% Similarity=0.303 Sum_probs=167.3
Q ss_pred HHHHHHHhhccccChHHHHHHHHHHHHHHH-------ccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCC----CC
Q 003094 522 LLKMEETLHKRVIGQDEAVKAISRAIRRAR-------VGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGS----EE 590 (848)
Q Consensus 522 l~~l~~~l~~~vigq~~~~~~l~~~~~~~~-------~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~----~~ 590 (848)
+.++...++..++|++.+++.|.+.+.... .|+.. ..+..++||+||||||||++|+++|+.+... ..
T Consensus 22 ~~~~~~~l~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~-~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~ 100 (309)
T 3syl_A 22 AKEVLEELDRELIGLKPVKDRIRETAALLLVERARQKLGLAH-ETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKG 100 (309)
T ss_dssp HHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCS-SCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSC
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhHHHHHHcCCCC-CCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCC
Confidence 456677788889999999999988776432 34443 3444579999999999999999999987432 34
Q ss_pred ceEEecccccccccchhcccCCCCCCcccccccchhHHHHcCCCeEEEEcCCCcC---------ChHHHHHHHhhhcCcE
Q 003094 591 AMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKA---------HPDVFNMMLQILEDGR 661 (848)
Q Consensus 591 ~~i~i~~~~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l---------~~~~~~~Ll~~le~g~ 661 (848)
+++.++++.+... +.|... ..+.+.+..+.++||||||+|.+ ++.+++.|++.|+++.
T Consensus 101 ~~~~~~~~~l~~~------------~~g~~~-~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~ 167 (309)
T 3syl_A 101 HLVSVTRDDLVGQ------------YIGHTA-PKTKEVLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNR 167 (309)
T ss_dssp CEEEECGGGTCCS------------STTCHH-HHHHHHHHHHTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCT
T ss_pred cEEEEcHHHhhhh------------cccccH-HHHHHHHHhcCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCC
Confidence 7888887766322 333322 23455566667889999999977 8899999999998743
Q ss_pred EEcCCCceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCC
Q 003094 662 LTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLT 741 (848)
Q Consensus 662 ~~~~~g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~ 741 (848)
.+++||+++|.... ...-.++|+|++||+.++.|++|+
T Consensus 168 -----------~~~~~i~~~~~~~~-------------------------------~~~~~~~~~l~~R~~~~i~~~~~~ 205 (309)
T 3syl_A 168 -----------DDLVVILAGYADRM-------------------------------ENFFQSNPGFRSRIAHHIEFPDYS 205 (309)
T ss_dssp -----------TTCEEEEEECHHHH-------------------------------HHHHHHSTTHHHHEEEEEEECCCC
T ss_pred -----------CCEEEEEeCChHHH-------------------------------HHHHhhCHHHHHhCCeEEEcCCcC
Confidence 57789999872210 011124699999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEeecHHHHHHHHHc-----cCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 003094 742 KLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEE-----GYNPSYGARPLRRAIMRLLEDSMAEKML 808 (848)
Q Consensus 742 ~~el~~I~~~~l~~~~~~~~~~~~~l~i~~~a~~~l~~~-----~~~~~~g~r~L~~~i~~~l~~~l~~~~l 808 (848)
.+++.+|+..++.+ ..+.+++++++.+... .+.|..++|.+++.+++++.....+.+-
T Consensus 206 ~~~~~~il~~~l~~---------~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~~~~~r~~~ 268 (309)
T 3syl_A 206 DEELFEIAGHMLDD---------QNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRARLRQANRLFT 268 (309)
T ss_dssp HHHHHHHHHHHHHH---------TTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---------cCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999888876 2356899999999884 2378888999999999999877766643
No 32
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.83 E-value=2.1e-19 Score=198.39 Aligned_cols=206 Identities=21% Similarity=0.326 Sum_probs=163.2
Q ss_pred hhhhhhhhcCCCCCccCChHHHHHHHHHhc------------cCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCC
Q 003094 185 TNLTKLAEEGKLDPVVGRQPQIERVVQILG------------RRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIE 252 (848)
Q Consensus 185 ~~l~~~~~~~~ld~iiG~~~~~~~l~~~l~------------~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~ 252 (848)
..+.....+..+++++|+++.++.|.+.+. ...+.++||+||||||||++|+++|+.+
T Consensus 72 ~~i~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~---------- 141 (357)
T 3d8b_A 72 NEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS---------- 141 (357)
T ss_dssp HHTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT----------
T ss_pred hhcccCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc----------
Confidence 344445566789999999999999888763 3467889999999999999999999987
Q ss_pred CceEEEEeCCcccccccccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCC---chHHHHHHHhhhhc------C
Q 003094 253 GKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAE---GAIDAANILKPSLA------R 323 (848)
Q Consensus 253 ~~~v~~~~~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~---~~~~~~~~L~~~l~------~ 323 (848)
+.+++.++++.+. ..+.|+.+..++.++..+....++||||||+|.+.+.+... ....+++.|...++ .
T Consensus 142 ~~~~~~i~~~~l~--~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~ 219 (357)
T 3d8b_A 142 GATFFSISASSLT--SKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSE 219 (357)
T ss_dssp TCEEEEEEGGGGC--CSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CC
T ss_pred CCeEEEEehHHhh--ccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCC
Confidence 5789999998887 45788889999999999988889999999999997653321 12344555555444 3
Q ss_pred CceEEEEeeChHHHHhhhhcChhhhcccC-CCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccC
Q 003094 324 GELQCIGATTLDEYRKHIEKDPALERRFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDR 402 (848)
Q Consensus 324 ~~v~vI~atn~~~~~~~~~~d~al~~Rf~-~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~ 402 (848)
..++||++||.++ .+++++.+||. .+.++.|+.+++.+|++.++.+ .+..++++.+..++..+.+|.+.
T Consensus 220 ~~v~vI~atn~~~-----~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~----~~~~l~~~~l~~la~~t~G~s~~- 289 (357)
T 3d8b_A 220 DRILVVGATNRPQ-----EIDEAARRRLVKRLYIPLPEASARKQIVINLMSK----EQCCLSEEEIEQIVQQSDAFSGA- 289 (357)
T ss_dssp CCEEEEEEESCGG-----GBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHT----SCBCCCHHHHHHHHHHTTTCCHH-
T ss_pred CCEEEEEecCChh-----hCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhh----cCCCccHHHHHHHHHHcCCCCHH-
Confidence 5799999999987 68999999998 8899999999999999988763 45668899999999998887543
Q ss_pred CChhhHHHHHHHHh
Q 003094 403 FLPDKAIDLIDEAG 416 (848)
Q Consensus 403 ~~p~~a~~ll~~a~ 416 (848)
....+++.|.
T Consensus 290 ----dl~~l~~~a~ 299 (357)
T 3d8b_A 290 ----DMTQLCREAS 299 (357)
T ss_dssp ----HHHHHHHHHH
T ss_pred ----HHHHHHHHHH
Confidence 4555555553
No 33
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.83 E-value=7.2e-21 Score=217.01 Aligned_cols=167 Identities=18% Similarity=0.181 Sum_probs=112.3
Q ss_pred hhhhhhcC-CCCCccCChHHHHHHHHHh---cc--CCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEe
Q 003094 187 LTKLAEEG-KLDPVVGRQPQIERVVQIL---GR--RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLD 260 (848)
Q Consensus 187 l~~~~~~~-~ld~iiG~~~~~~~l~~~l---~~--~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~ 260 (848)
+.+..++. .+++++|+++.++.+..++ .. .+++++||+||||||||++|+++|+.+.. ..+++.++
T Consensus 26 l~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~--------~~~~~~~~ 97 (456)
T 2c9o_A 26 LDESGLAKQAASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGS--------KVPFCPMV 97 (456)
T ss_dssp BCTTSCBCSEETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCT--------TSCEEEEE
T ss_pred CCcccChhhchhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCC--------CceEEEEe
Confidence 33344444 3689999999988655443 22 34578999999999999999999999842 26789999
Q ss_pred CCcccccccccchHHHHHHHHHHHH---HhCCCeEEEEcccchhhhCCCCCchH--------------------------
Q 003094 261 MGLLVAGTKYRGEFEERLKKLMEEI---KQSDEIILFIDEVHTLIGAGAAEGAI-------------------------- 311 (848)
Q Consensus 261 ~~~l~~~~~~~g~~~~~l~~l~~~~---~~~~~~IL~IDEid~l~~~~~~~~~~-------------------------- 311 (848)
++.+. .++.|+.+. +..+|..+ +...|+||||||+|.+++.+......
T Consensus 98 ~~~~~--~~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 174 (456)
T 2c9o_A 98 GSEVY--STEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDP 174 (456)
T ss_dssp GGGGC--CSSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECH
T ss_pred HHHHH--HHhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhH
Confidence 98887 568888887 88899888 66779999999999998765433110
Q ss_pred HHHHHHh-hhhcCCceEEE-EeeChHHHHhhhhcChhhhc--ccC---CCcCCCCCH--HHHHHHHH
Q 003094 312 DAANILK-PSLARGELQCI-GATTLDEYRKHIEKDPALER--RFQ---PVKVPEPSV--DETIQILK 369 (848)
Q Consensus 312 ~~~~~L~-~~l~~~~v~vI-~atn~~~~~~~~~~d~al~~--Rf~---~i~~~~p~~--~e~~~Il~ 369 (848)
...+.+. .-...+.+++| ++||..+ .+|+++.| ||+ .+.++.|+. ++|.+|++
T Consensus 175 ~ll~~l~~~~~~~~~~v~i~attn~~~-----~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~ 236 (456)
T 2c9o_A 175 SIFESLQKERVEAGDVIYIEANSGAVK-----RQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQ 236 (456)
T ss_dssp HHHHHHHHTTCCTTEEEEEETTTCCEE-----EEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEE
T ss_pred HHHHHHhhccCCCCCEEEEEcCCCCcc-----cCChhhcCCcccCcceeEecCCCchhHHHHHHHHH
Confidence 0122221 11234555554 6666665 68888865 885 356666643 44544443
No 34
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.82 E-value=5.3e-21 Score=227.15 Aligned_cols=198 Identities=21% Similarity=0.332 Sum_probs=138.2
Q ss_pred CCCCCccCChHHHHHHHHHhc-------------cCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEe
Q 003094 194 GKLDPVVGRQPQIERVVQILG-------------RRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLD 260 (848)
Q Consensus 194 ~~ld~iiG~~~~~~~l~~~l~-------------~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~ 260 (848)
.+++++.|.++.++.|.+.+. ..+++++|||||||||||++|+++|.++ +.+++.++
T Consensus 474 v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~----------~~~f~~v~ 543 (806)
T 3cf2_A 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISIK 543 (806)
T ss_dssp CCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTT----------TCEEEECC
T ss_pred CCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHh----------CCceEEec
Confidence 468889999999998877542 3567889999999999999999999998 67899999
Q ss_pred CCcccccccccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCC------chHHHHHHHhhhhc----CCceEEEE
Q 003094 261 MGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAE------GAIDAANILKPSLA----RGELQCIG 330 (848)
Q Consensus 261 ~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~------~~~~~~~~L~~~l~----~~~v~vI~ 330 (848)
.+.+. ++|.|+.+..++.+|+.++...|+||||||+|.+++.+... ....+.+.|+..++ ..+++||+
T Consensus 544 ~~~l~--s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~ 621 (806)
T 3cf2_A 544 GPELL--TMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIG 621 (806)
T ss_dssp HHHHH--TTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEEC
T ss_pred cchhh--ccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEE
Confidence 88888 67999999999999999999999999999999998765321 12245666666654 56799999
Q ss_pred eeChHHHHhhhhcChhhhc--ccC-CCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCChhh
Q 003094 331 ATTLDEYRKHIEKDPALER--RFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDK 407 (848)
Q Consensus 331 atn~~~~~~~~~~d~al~~--Rf~-~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~p~~ 407 (848)
|||.++ .+|++++| ||+ .|+|+.|+.++|.+||+.++++.... .+..+..+++.+.+|.+. +
T Consensus 622 aTN~p~-----~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~-----~~~dl~~la~~t~g~SGa-----d 686 (806)
T 3cf2_A 622 ATNRPD-----IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-----KDVDLEFLAKMTNGFSGA-----D 686 (806)
T ss_dssp C-CCSS-----SSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--C-----CC---------------------C
T ss_pred eCCCch-----hCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCC-----CCCCHHHHHHhCCCCCHH-----H
Confidence 999998 79999999 997 89999999999999999877532211 234578889999888766 5
Q ss_pred HHHHHHHHhhH
Q 003094 408 AIDLIDEAGSR 418 (848)
Q Consensus 408 a~~ll~~a~~~ 418 (848)
...++.+|...
T Consensus 687 i~~l~~~A~~~ 697 (806)
T 3cf2_A 687 LTEICQRACKL 697 (806)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 56666666543
No 35
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.81 E-value=6.2e-19 Score=189.74 Aligned_cols=205 Identities=21% Similarity=0.302 Sum_probs=159.2
Q ss_pred hhhhhhhcCCCCCccCChHHHHHHHHHhcc------------CCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCC
Q 003094 186 NLTKLAEEGKLDPVVGRQPQIERVVQILGR------------RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEG 253 (848)
Q Consensus 186 ~l~~~~~~~~ld~iiG~~~~~~~l~~~l~~------------~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~ 253 (848)
.+.....+..+++++|+++.++.|.+.+.. .++.++||+||||||||++|+++++.+ +
T Consensus 10 ~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~----------~ 79 (297)
T 3b9p_A 10 EIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC----------S 79 (297)
T ss_dssp TTBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT----------T
T ss_pred HhccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh----------C
Confidence 344555667899999999999998887632 356789999999999999999999987 5
Q ss_pred ceEEEEeCCcccccccccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCC---chHHHHHHHhhhhc-------C
Q 003094 254 KKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAE---GAIDAANILKPSLA-------R 323 (848)
Q Consensus 254 ~~v~~~~~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~---~~~~~~~~L~~~l~-------~ 323 (848)
.+++.++++.+. ..+.|+.+..++.++..+....++||||||+|.+.+..... ......+.|...++ .
T Consensus 80 ~~~~~i~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 157 (297)
T 3b9p_A 80 ATFLNISAASLT--SKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDG 157 (297)
T ss_dssp CEEEEEESTTTS--SSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC-----
T ss_pred CCeEEeeHHHHh--hcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCC
Confidence 678999998876 45678888889999999988889999999999998654321 12334444444443 2
Q ss_pred CceEEEEeeChHHHHhhhhcChhhhcccC-CCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccC
Q 003094 324 GELQCIGATTLDEYRKHIEKDPALERRFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDR 402 (848)
Q Consensus 324 ~~v~vI~atn~~~~~~~~~~d~al~~Rf~-~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~ 402 (848)
..+++|++||.++ .+++++.+||. .+.++.|+.+++..|++.++.+ .+..++++.+..++..+.++.+.
T Consensus 158 ~~v~vi~~tn~~~-----~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~----~~~~~~~~~~~~la~~~~g~~~~- 227 (297)
T 3b9p_A 158 DRIVVLAATNRPQ-----ELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQK----QGSPLDTEALRRLAKITDGYSGS- 227 (297)
T ss_dssp -CEEEEEEESCGG-----GBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGG----GSCCSCHHHHHHHHHHTTTCCHH-
T ss_pred CcEEEEeecCChh-----hCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHHcCCCCHH-
Confidence 4689999999887 68999999997 8899999999999999987763 35567889999999988877543
Q ss_pred CChhhHHHHHHHHh
Q 003094 403 FLPDKAIDLIDEAG 416 (848)
Q Consensus 403 ~~p~~a~~ll~~a~ 416 (848)
....+++.|.
T Consensus 228 ----~l~~l~~~a~ 237 (297)
T 3b9p_A 228 ----DLTALAKDAA 237 (297)
T ss_dssp ----HHHHHHHHHT
T ss_pred ----HHHHHHHHHH
Confidence 3445555554
No 36
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.81 E-value=1.8e-19 Score=204.38 Aligned_cols=204 Identities=21% Similarity=0.293 Sum_probs=156.2
Q ss_pred hhhhcCCCCCccCChHHHHHHHHHhc------------cCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceE
Q 003094 189 KLAEEGKLDPVVGRQPQIERVVQILG------------RRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKV 256 (848)
Q Consensus 189 ~~~~~~~ld~iiG~~~~~~~l~~~l~------------~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v 256 (848)
....+..|++++|+++.++.|.+.+. ..+++++||+||||||||++|+++|+.+. +.++
T Consensus 126 ~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~---------~~~~ 196 (444)
T 2zan_A 126 IERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN---------NSTF 196 (444)
T ss_dssp CCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCC---------SSEE
T ss_pred ccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcC---------CCCE
Confidence 33455679999999999999888762 24568899999999999999999999872 4678
Q ss_pred EEEeCCcccccccccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCC---chHHHHHHHhhhhc-----CCceEE
Q 003094 257 ITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAE---GAIDAANILKPSLA-----RGELQC 328 (848)
Q Consensus 257 ~~~~~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~---~~~~~~~~L~~~l~-----~~~v~v 328 (848)
+.++++.+. .++.|+.+..++.+|..+....++||||||+|.+.+.+... ....+.+.|...++ ...++|
T Consensus 197 ~~v~~~~l~--~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~v 274 (444)
T 2zan_A 197 FSISSSDLV--SKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILV 274 (444)
T ss_dssp EEECCC-----------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEE
T ss_pred EEEeHHHHH--hhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEE
Confidence 899988876 45777777888999999988889999999999997654332 23345566665553 467999
Q ss_pred EEeeChHHHHhhhhcChhhhcccC-CCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCChhh
Q 003094 329 IGATTLDEYRKHIEKDPALERRFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDK 407 (848)
Q Consensus 329 I~atn~~~~~~~~~~d~al~~Rf~-~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~p~~ 407 (848)
|++||.++ .+++++.|||+ .+.++.|+.+++..|++.++.+ ....+++..+..++..+.+|.+. +
T Consensus 275 I~atn~~~-----~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~----~~~~l~~~~l~~la~~t~G~sga-----d 340 (444)
T 2zan_A 275 LGATNIPW-----VLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGS----TQNSLTEADFQELGRKTDGYSGA-----D 340 (444)
T ss_dssp EEEESCGG-----GSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTT----SCEECCHHHHHHHHHHTTTCCHH-----H
T ss_pred EecCCCcc-----ccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHcCCCCHH-----H
Confidence 99999987 68999999997 8999999999999999987753 34456888999999999887654 5
Q ss_pred HHHHHHHHhh
Q 003094 408 AIDLIDEAGS 417 (848)
Q Consensus 408 a~~ll~~a~~ 417 (848)
...++.+|..
T Consensus 341 l~~l~~~a~~ 350 (444)
T 2zan_A 341 ISIIVRDALM 350 (444)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 5666666643
No 37
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.81 E-value=1.6e-18 Score=210.20 Aligned_cols=174 Identities=21% Similarity=0.275 Sum_probs=114.0
Q ss_pred hhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCC-------CCceEEecccccc
Q 003094 529 LHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGS-------EEAMIRLDMSEFM 601 (848)
Q Consensus 529 l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~-------~~~~i~i~~~~~~ 601 (848)
-.+.++|++..++.+...+.. +...++||+||||||||++|+++|+.+.+. +..++.+|+
T Consensus 178 ~ld~iiG~~~~i~~l~~~l~~---------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~---- 244 (758)
T 3pxi_A 178 SLDPVIGRSKEIQRVIEVLSR---------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM---- 244 (758)
T ss_dssp CSCCCCCCHHHHHHHHHHHHC---------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC------
T ss_pred CCCCccCchHHHHHHHHHHhC---------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc----
Confidence 356799999999999887753 222469999999999999999999998543 344555554
Q ss_pred cccchhcccCCCCCCcccccc--cchhHHHHcCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecCCeEEEE
Q 003094 602 ERHTVSKLIGSPPGYVGYTEG--GQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIM 679 (848)
Q Consensus 602 ~~~~~~~l~g~~~g~~g~~~~--~~l~~~~~~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~ 679 (848)
| ..|.|..+. ..+++.+....++||||| ...+.++.|+..|+.+ ++++|+
T Consensus 245 ---------g--~~~~G~~e~~l~~~~~~~~~~~~~iLfiD----~~~~~~~~L~~~l~~~-------------~v~~I~ 296 (758)
T 3pxi_A 245 ---------G--TKYRGEFEDRLKKVMDEIRQAGNIILFID----AAIDASNILKPSLARG-------------ELQCIG 296 (758)
T ss_dssp -------------------CTTHHHHHHHHHTCCCCEEEEC----C--------CCCTTSS-------------SCEEEE
T ss_pred ---------c--ccccchHHHHHHHHHHHHHhcCCEEEEEc----CchhHHHHHHHHHhcC-------------CEEEEe
Confidence 1 124454333 345666777788999999 6678999999999864 456888
Q ss_pred ecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHHHHHHHHHHH
Q 003094 680 TSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDR 759 (848)
Q Consensus 680 tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~~~l~~~~~~ 759 (848)
+||...- . ..-.++|+|.+|| ..|.|++++.++..+|+..++..+..
T Consensus 297 at~~~~~----------------------~---------~~~~~d~al~rRf-~~i~v~~p~~~~~~~il~~~~~~~~~- 343 (758)
T 3pxi_A 297 ATTLDEY----------------------R---------KYIEKDAALERRF-QPIQVDQPSVDESIQILQGLRDRYEA- 343 (758)
T ss_dssp ECCTTTT----------------------H---------HHHTTCSHHHHSE-EEEECCCCCHHHHHHHHHHTTTTSGG-
T ss_pred CCChHHH----------------------H---------HHhhccHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHHHHH-
Confidence 8874331 0 0012578999999 78999999999999999865543211
Q ss_pred HhcCCCeEeecHHHHHHHHHc
Q 003094 760 LKTKDIELQVTERFRERVVEE 780 (848)
Q Consensus 760 ~~~~~~~l~i~~~a~~~l~~~ 780 (848)
...+.++++++..++..
T Consensus 344 ----~~~~~i~~~al~~~~~~ 360 (758)
T 3pxi_A 344 ----HHRVSITDDAIEAAVKL 360 (758)
T ss_dssp ----GSSCSCCHHHHHHHHHH
T ss_pred ----hcCCCCCHHHHHHHHHH
Confidence 13345788888888764
No 38
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.81 E-value=1.2e-19 Score=198.72 Aligned_cols=199 Identities=21% Similarity=0.324 Sum_probs=148.5
Q ss_pred hhccccChHHHHHHHHHHHHHH--------HccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEeccccc
Q 003094 529 LHKRVIGQDEAVKAISRAIRRA--------RVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEF 600 (848)
Q Consensus 529 l~~~vigq~~~~~~l~~~~~~~--------~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~ 600 (848)
-|++|.|.+++++.|.+.+... ..|+..| ..+|||||||||||++|+++|..+ +.+|+.++++++
T Consensus 180 ~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~p----rGvLLyGPPGTGKTlLAkAiA~e~---~~~fi~v~~s~l 252 (437)
T 4b4t_I 180 SYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPP----KGVILYGAPGTGKTLLAKAVANQT---SATFLRIVGSEL 252 (437)
T ss_dssp CGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCC----SEEEEESSTTTTHHHHHHHHHHHH---TCEEEEEESGGG
T ss_pred cceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCC----CCCceECCCCchHHHHHHHHHHHh---CCCEEEEEHHHh
Confidence 4667899999999999888653 2344443 359999999999999999999998 889999999887
Q ss_pred ccccchhcccCCCCCCcccccc--cchhHHHHcCCCeEEEEcCCCcCCh--------------HHHHHHHhhhcCcEEEc
Q 003094 601 MERHTVSKLIGSPPGYVGYTEG--GQLTEAVRRRPYTVVLFDEIEKAHP--------------DVFNMMLQILEDGRLTD 664 (848)
Q Consensus 601 ~~~~~~~~l~g~~~g~~g~~~~--~~l~~~~~~~~~~Vl~lDEid~l~~--------------~~~~~Ll~~le~g~~~~ 664 (848)
... |+|.++. ..++..++...++||||||+|.+.+ .+++.||..|+...
T Consensus 253 ~sk------------~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~--- 317 (437)
T 4b4t_I 253 IQK------------YLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFD--- 317 (437)
T ss_dssp CCS------------SSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCC---
T ss_pred hhc------------cCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcC---
Confidence 543 7777654 5678888888899999999998732 25666777776422
Q ss_pred CCCceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhh--ccCeEEEcCCCCH
Q 003094 665 SKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLN--RLDEMIVFRQLTK 742 (848)
Q Consensus 665 ~~g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~--R~d~~i~f~~l~~ 742 (848)
...+++||+|||.... ++|+|+. |||..|.|+.++.
T Consensus 318 ------~~~~ViVIaATNrpd~------------------------------------LDpALlRpGRfD~~I~v~lPd~ 355 (437)
T 4b4t_I 318 ------DRGDVKVIMATNKIET------------------------------------LDPALIRPGRIDRKILFENPDL 355 (437)
T ss_dssp ------CSSSEEEEEEESCSTT------------------------------------CCTTSSCTTTEEEEECCCCCCH
T ss_pred ------CCCCEEEEEeCCChhh------------------------------------cCHHHhcCCceeEEEEcCCcCH
Confidence 1257899999995543 6799986 9999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHHHHHHHHH
Q 003094 743 LEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSM 803 (848)
Q Consensus 743 ~el~~I~~~~l~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~l~~~l 803 (848)
++..+|+..++..+ ...-.++ ++.|+. ....+.+.+|+..+..+...++
T Consensus 356 ~~R~~Il~~~l~~~-------~l~~dvd---l~~LA~--~T~GfSGADI~~l~~eA~~~Ai 404 (437)
T 4b4t_I 356 STKKKILGIHTSKM-------NLSEDVN---LETLVT--TKDDLSGADIQAMCTEAGLLAL 404 (437)
T ss_dssp HHHHHHHHHHHTTS-------CBCSCCC---HHHHHH--HCCSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-------CCCCcCC---HHHHHH--hCCCCCHHHHHHHHHHHHHHHH
Confidence 99999998776431 1111122 456666 3445677889888877665544
No 39
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.80 E-value=4e-19 Score=196.52 Aligned_cols=199 Identities=21% Similarity=0.319 Sum_probs=148.7
Q ss_pred hhccccChHHHHHHHHHHHHHH--------HccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEeccccc
Q 003094 529 LHKRVIGQDEAVKAISRAIRRA--------RVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEF 600 (848)
Q Consensus 529 l~~~vigq~~~~~~l~~~~~~~--------~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~ 600 (848)
-|++|.|.+++++.|.+.+... ..|+..| ..+|||||||||||++|+++|..+ +.+|+.++++++
T Consensus 207 t~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pp----rGILLyGPPGTGKTlLAkAiA~e~---~~~fi~vs~s~L 279 (467)
T 4b4t_H 207 TYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPP----KGILLYGPPGTGKTLCARAVANRT---DATFIRVIGSEL 279 (467)
T ss_dssp CCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCC----SEEEECSCTTSSHHHHHHHHHHHH---TCEEEEEEGGGG
T ss_pred CHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCC----CceEeeCCCCCcHHHHHHHHHhcc---CCCeEEEEhHHh
Confidence 4678999999999998877542 2355444 359999999999999999999998 789999999887
Q ss_pred ccccchhcccCCCCCCcccccc--cchhHHHHcCCCeEEEEcCCCcCCh--------------HHHHHHHhhhcCcEEEc
Q 003094 601 MERHTVSKLIGSPPGYVGYTEG--GQLTEAVRRRPYTVVLFDEIEKAHP--------------DVFNMMLQILEDGRLTD 664 (848)
Q Consensus 601 ~~~~~~~~l~g~~~g~~g~~~~--~~l~~~~~~~~~~Vl~lDEid~l~~--------------~~~~~Ll~~le~g~~~~ 664 (848)
... |+|.++. +.++..++...++||||||+|.+.. .+++.||..|+...
T Consensus 280 ~sk------------~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~--- 344 (467)
T 4b4t_H 280 VQK------------YVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFD--- 344 (467)
T ss_dssp CCC------------SSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSC---
T ss_pred hcc------------cCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccC---
Confidence 543 7777654 5677888888899999999998732 25667777777532
Q ss_pred CCCceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhh--ccCeEEEcCCCCH
Q 003094 665 SKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLN--RLDEMIVFRQLTK 742 (848)
Q Consensus 665 ~~g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~--R~d~~i~f~~l~~ 742 (848)
...++++|+|||.... ++|+|+. |||..|.|+.++.
T Consensus 345 ------~~~~ViVIaATNrpd~------------------------------------LDpALlRpGRFD~~I~i~lPd~ 382 (467)
T 4b4t_H 345 ------PRGNIKVMFATNRPNT------------------------------------LDPALLRPGRIDRKVEFSLPDL 382 (467)
T ss_dssp ------CTTTEEEEEECSCTTS------------------------------------BCHHHHSTTTCCEEECCCCCCH
T ss_pred ------CCCcEEEEeCCCCccc------------------------------------CChhhhccccccEEEEeCCcCH
Confidence 1257899999995443 6799986 9999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHHHHHHHHH
Q 003094 743 LEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSM 803 (848)
Q Consensus 743 ~el~~I~~~~l~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~l~~~l 803 (848)
++..+|++.++..+ ...-.++ ++.|+. ....+.+.+|+..+..+...++
T Consensus 383 ~~R~~Ilk~~l~~~-------~l~~dvd---l~~LA~--~T~GfSGADI~~l~~eAa~~Ai 431 (467)
T 4b4t_H 383 EGRANIFRIHSKSM-------SVERGIR---WELISR--LCPNSTGAELRSVCTEAGMFAI 431 (467)
T ss_dssp HHHHHHHHHHHTTS-------CBCSSCC---HHHHHH--HCCSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-------CCCCCCC---HHHHHH--HCCCCCHHHHHHHHHHHHHHHH
Confidence 99999998776431 1111122 355666 3445677889888877665544
No 40
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.80 E-value=1.8e-19 Score=200.34 Aligned_cols=199 Identities=18% Similarity=0.301 Sum_probs=149.7
Q ss_pred hhccccChHHHHHHHHHHHHHH--------HccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEeccccc
Q 003094 529 LHKRVIGQDEAVKAISRAIRRA--------RVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEF 600 (848)
Q Consensus 529 l~~~vigq~~~~~~l~~~~~~~--------~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~ 600 (848)
-|++|.|.+++++.|.+.+... ..|+..| .++|||||||||||++|+++|..+ +.+|+.++++++
T Consensus 179 t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~p----rGvLLyGPPGTGKTllAkAiA~e~---~~~f~~v~~s~l 251 (434)
T 4b4t_M 179 TYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAP----KGALMYGPPGTGKTLLARACAAQT---NATFLKLAAPQL 251 (434)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCC----CEEEEESCTTSSHHHHHHHHHHHH---TCEEEEEEGGGG
T ss_pred ChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCC----CeeEEECcCCCCHHHHHHHHHHHh---CCCEEEEehhhh
Confidence 4778999999999998887543 2354443 359999999999999999999998 889999999887
Q ss_pred ccccchhcccCCCCCCcccccc--cchhHHHHcCCCeEEEEcCCCcCCh--------------HHHHHHHhhhcCcEEEc
Q 003094 601 MERHTVSKLIGSPPGYVGYTEG--GQLTEAVRRRPYTVVLFDEIEKAHP--------------DVFNMMLQILEDGRLTD 664 (848)
Q Consensus 601 ~~~~~~~~l~g~~~g~~g~~~~--~~l~~~~~~~~~~Vl~lDEid~l~~--------------~~~~~Ll~~le~g~~~~ 664 (848)
... |+|.++. +.++..++...++||||||+|.+.+ .+++.||+.|+...
T Consensus 252 ~~~------------~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~--- 316 (434)
T 4b4t_M 252 VQM------------YIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFS--- 316 (434)
T ss_dssp CSS------------CSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSC---
T ss_pred hhc------------ccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccC---
Confidence 543 7776654 5677777888889999999997621 25677888887632
Q ss_pred CCCceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhh--ccCeEEEcCCCCH
Q 003094 665 SKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLN--RLDEMIVFRQLTK 742 (848)
Q Consensus 665 ~~g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~--R~d~~i~f~~l~~ 742 (848)
...+++||+|||.... ++|+|+. |||..|.|+.++.
T Consensus 317 ------~~~~ViVIaaTNrp~~------------------------------------LD~AllRpGRfD~~I~i~lPd~ 354 (434)
T 4b4t_M 317 ------SDDRVKVLAATNRVDV------------------------------------LDPALLRSGRLDRKIEFPLPSE 354 (434)
T ss_dssp ------SSCSSEEEEECSSCCC------------------------------------CCTTTCSTTSEEEEEECCCCCH
T ss_pred ------CCCCEEEEEeCCCchh------------------------------------cCHhHhcCCceeEEEEeCCcCH
Confidence 1246799999996553 6789976 9999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHHHHHHHHH
Q 003094 743 LEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSM 803 (848)
Q Consensus 743 ~el~~I~~~~l~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~l~~~l 803 (848)
++..+|++.++..+ ...-.++ ++.|+. ....+.+.+|+..+..+...++
T Consensus 355 ~~R~~Il~~~~~~~-------~~~~dvd---l~~lA~--~t~G~sGADi~~l~~eA~~~a~ 403 (434)
T 4b4t_M 355 DSRAQILQIHSRKM-------TTDDDIN---WQELAR--STDEFNGAQLKAVTVEAGMIAL 403 (434)
T ss_dssp HHHHHHHHHHHHHS-------CBCSCCC---HHHHHH--HCSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-------CCCCcCC---HHHHHH--hCCCCCHHHHHHHHHHHHHHHH
Confidence 99999998777542 1111122 456666 3445678899888887766554
No 41
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.80 E-value=8.1e-19 Score=200.09 Aligned_cols=205 Identities=25% Similarity=0.333 Sum_probs=161.6
Q ss_pred hhhcCCCCCccCChHHHHHHHHHhc-------------cCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceE
Q 003094 190 LAEEGKLDPVVGRQPQIERVVQILG-------------RRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKV 256 (848)
Q Consensus 190 ~~~~~~ld~iiG~~~~~~~l~~~l~-------------~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v 256 (848)
...+..+++++|.++++++|.+.+. ...+.++||+||||||||++|+++++.+ +.++
T Consensus 197 ~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~----------~~~f 266 (489)
T 3hu3_A 197 SLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET----------GAFF 266 (489)
T ss_dssp HHTCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC----------SSEE
T ss_pred ccCCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh----------CCCE
Confidence 3445678999999999999887764 3667889999999999999999999987 5789
Q ss_pred EEEeCCcccccccccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCCc---hHHHHHHHhhhhc----CCceEEE
Q 003094 257 ITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEG---AIDAANILKPSLA----RGELQCI 329 (848)
Q Consensus 257 ~~~~~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~~---~~~~~~~L~~~l~----~~~v~vI 329 (848)
+.+++..+. ..+.|+.+..++.+|..+....|++|||||+|.+.+.+.... ...+++.|+..++ ...++||
T Consensus 267 v~vn~~~l~--~~~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vI 344 (489)
T 3hu3_A 267 FLINGPEIM--SKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVM 344 (489)
T ss_dssp EEEEHHHHH--TSCTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEE
T ss_pred EEEEchHhh--hhhcchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEE
Confidence 999998887 557789999999999999999999999999999987654322 2356666666665 5679999
Q ss_pred EeeChHHHHhhhhcChhhhc--ccC-CCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCChh
Q 003094 330 GATTLDEYRKHIEKDPALER--RFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPD 406 (848)
Q Consensus 330 ~atn~~~~~~~~~~d~al~~--Rf~-~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~p~ 406 (848)
++||.++ .+++++.+ ||. .+.|+.|+.++|.+||+.+++.+ .+. .+..+..++..+.+|.+ .
T Consensus 345 aaTn~~~-----~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~----~l~-~~~~l~~la~~t~g~s~-----~ 409 (489)
T 3hu3_A 345 AATNRPN-----SIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNM----KLA-DDVDLEQVANETHGHVG-----A 409 (489)
T ss_dssp EEESCGG-----GBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTS----CBC-TTCCHHHHHHTCTTCCH-----H
T ss_pred EecCCcc-----ccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcC----CCc-chhhHHHHHHHccCCcH-----H
Confidence 9999987 68999999 887 79999999999999999776532 111 23346777777776654 4
Q ss_pred hHHHHHHHHhhHHHH
Q 003094 407 KAIDLIDEAGSRVRL 421 (848)
Q Consensus 407 ~a~~ll~~a~~~~~~ 421 (848)
+...++..|...+..
T Consensus 410 dL~~L~~~A~~~a~r 424 (489)
T 3hu3_A 410 DLAALCSEAALQAIR 424 (489)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 666777777655443
No 42
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.80 E-value=2.5e-18 Score=183.75 Aligned_cols=203 Identities=26% Similarity=0.395 Sum_probs=157.1
Q ss_pred cCCCCCccCChHHHHHHHHHhcc-------------CCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEE
Q 003094 193 EGKLDPVVGRQPQIERVVQILGR-------------RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITL 259 (848)
Q Consensus 193 ~~~ld~iiG~~~~~~~l~~~l~~-------------~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~ 259 (848)
+.++++++|+++++++|.+.+.. ..+.++||+||||||||++|+++++.+ +.+++.+
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~----------~~~~~~v 82 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET----------NATFIRV 82 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT----------TCEEEEE
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh----------CCCEEEE
Confidence 35689999999999998877643 567889999999999999999999988 5789999
Q ss_pred eCCcccccccccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCC---chHHHHHHHhhhh-------cCCceEEE
Q 003094 260 DMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAE---GAIDAANILKPSL-------ARGELQCI 329 (848)
Q Consensus 260 ~~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~---~~~~~~~~L~~~l-------~~~~v~vI 329 (848)
++..+. ..+.|..+..+..++..+....|+||||||+|.+.+..... +.......+..++ ....+++|
T Consensus 83 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI 160 (285)
T 3h4m_A 83 VGSELV--KKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKII 160 (285)
T ss_dssp EGGGGC--CCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEE
T ss_pred ehHHHH--HhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEE
Confidence 988877 45778889999999999999889999999999998654332 2223333333333 24579999
Q ss_pred EeeChHHHHhhhhcChhhhc--ccC-CCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCChh
Q 003094 330 GATTLDEYRKHIEKDPALER--RFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPD 406 (848)
Q Consensus 330 ~atn~~~~~~~~~~d~al~~--Rf~-~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~p~ 406 (848)
++||.++ .+++++.+ ||. .+.++.|+.+++.+|++.++... ... .+..+..++..+.++. ++
T Consensus 161 ~ttn~~~-----~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~----~~~-~~~~~~~l~~~~~g~~-----~~ 225 (285)
T 3h4m_A 161 GATNRPD-----ILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKM----NLA-EDVNLEEIAKMTEGCV-----GA 225 (285)
T ss_dssp EECSCGG-----GBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTS----CBC-TTCCHHHHHHHCTTCC-----HH
T ss_pred EeCCCch-----hcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcC----CCC-CcCCHHHHHHHcCCCC-----HH
Confidence 9999887 68999999 996 89999999999999999776532 111 2334677777777764 44
Q ss_pred hHHHHHHHHhhHHHHh
Q 003094 407 KAIDLIDEAGSRVRLR 422 (848)
Q Consensus 407 ~a~~ll~~a~~~~~~~ 422 (848)
....++..|...+..+
T Consensus 226 ~i~~l~~~a~~~a~~~ 241 (285)
T 3h4m_A 226 ELKAICTEAGMNAIRE 241 (285)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 6777777776665544
No 43
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.79 E-value=6.1e-19 Score=196.17 Aligned_cols=199 Identities=21% Similarity=0.320 Sum_probs=150.1
Q ss_pred hhccccChHHHHHHHHHHHHHH--------HccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEeccccc
Q 003094 529 LHKRVIGQDEAVKAISRAIRRA--------RVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEF 600 (848)
Q Consensus 529 l~~~vigq~~~~~~l~~~~~~~--------~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~ 600 (848)
-|++|.|.+++++.|.+.+... ..|+.+| ..+|||||||||||++|+++|..+ +.+|+.++++++
T Consensus 179 ~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~p----rGvLL~GPPGtGKTllAkAiA~e~---~~~~~~v~~s~l 251 (437)
T 4b4t_L 179 TFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPP----KGVLLYGPPGTGKTLLAKAVAATI---GANFIFSPASGI 251 (437)
T ss_dssp CSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCC----CEEEEESCTTSSHHHHHHHHHHHH---TCEEEEEEGGGT
T ss_pred ChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCC----CeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEehhhh
Confidence 4778999999999999888653 2354443 359999999999999999999998 789999999887
Q ss_pred ccccchhcccCCCCCCcccccc--cchhHHHHcCCCeEEEEcCCCcCCh--------------HHHHHHHhhhcCcEEEc
Q 003094 601 MERHTVSKLIGSPPGYVGYTEG--GQLTEAVRRRPYTVVLFDEIEKAHP--------------DVFNMMLQILEDGRLTD 664 (848)
Q Consensus 601 ~~~~~~~~l~g~~~g~~g~~~~--~~l~~~~~~~~~~Vl~lDEid~l~~--------------~~~~~Ll~~le~g~~~~ 664 (848)
.+. |+|.++. ..++..++...++||||||+|.+.+ .+++.||..|+...
T Consensus 252 ~sk------------~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~--- 316 (437)
T 4b4t_L 252 VDK------------YIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFD--- 316 (437)
T ss_dssp CCS------------SSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSS---
T ss_pred ccc------------cchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhccc---
Confidence 543 7776554 5677778888899999999998732 25778888887632
Q ss_pred CCCceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhh--ccCeEEEcCCCCH
Q 003094 665 SKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLN--RLDEMIVFRQLTK 742 (848)
Q Consensus 665 ~~g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~--R~d~~i~f~~l~~ 742 (848)
...+++||+|||.... ++|+|+. |||..|.|+.++.
T Consensus 317 ------~~~~vivI~ATNrp~~------------------------------------LDpAllRpGRfD~~I~i~lPd~ 354 (437)
T 4b4t_L 317 ------NLGQTKIIMATNRPDT------------------------------------LDPALLRPGRLDRKVEIPLPNE 354 (437)
T ss_dssp ------CTTSSEEEEEESSTTS------------------------------------SCTTTTSTTSEEEEECCCCCCH
T ss_pred ------CCCCeEEEEecCCchh------------------------------------hCHHHhCCCccceeeecCCcCH
Confidence 1246799999995543 6788874 6999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHHHHHHHHH
Q 003094 743 LEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSM 803 (848)
Q Consensus 743 ~el~~I~~~~l~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~l~~~l 803 (848)
++..+|++.++..+ ...-.++ ++.|+. ....|.+.+|+.++..+...++
T Consensus 355 ~~R~~Il~~~~~~~-------~~~~d~d---l~~lA~--~t~G~sGADi~~l~~eA~~~ai 403 (437)
T 4b4t_L 355 AGRLEIFKIHTAKV-------KKTGEFD---FEAAVK--MSDGFNGADIRNCATEAGFFAI 403 (437)
T ss_dssp HHHHHHHHHHHHTS-------CBCSCCC---HHHHHH--TCCSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-------CCCcccC---HHHHHH--hCCCCCHHHHHHHHHHHHHHHH
Confidence 99999998777542 1111122 456666 4556778889888877665543
No 44
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.79 E-value=4.6e-19 Score=191.00 Aligned_cols=200 Identities=21% Similarity=0.326 Sum_probs=151.4
Q ss_pred hcCCCCCccCChHHHHHHHHHhc-------------cCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEE
Q 003094 192 EEGKLDPVVGRQPQIERVVQILG-------------RRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVIT 258 (848)
Q Consensus 192 ~~~~ld~iiG~~~~~~~l~~~l~-------------~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~ 258 (848)
.+.++++++|.++.++.|.+.+. ...+.++||+||||||||++|+++|+.+ +.+++.
T Consensus 10 ~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~----------~~~~i~ 79 (301)
T 3cf0_A 10 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFIS 79 (301)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT----------TCEEEE
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh----------CCCEEE
Confidence 34578899999999998877654 3567789999999999999999999988 467888
Q ss_pred EeCCcccccccccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCC------CchHHHHHHHhhhhc----CCceEE
Q 003094 259 LDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAA------EGAIDAANILKPSLA----RGELQC 328 (848)
Q Consensus 259 ~~~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~------~~~~~~~~~L~~~l~----~~~v~v 328 (848)
+++..+. .++.|+.+..+..+|..+....|+||||||+|.+.+.... .....+.+.|...++ ..+++|
T Consensus 80 v~~~~l~--~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~v 157 (301)
T 3cf0_A 80 IKGPELL--TMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFI 157 (301)
T ss_dssp ECHHHHH--HHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEE
T ss_pred EEhHHHH--hhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEE
Confidence 8887775 3466777778899999998888999999999999864221 112234444554443 457999
Q ss_pred EEeeChHHHHhhhhcChhhhc--ccC-CCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCCh
Q 003094 329 IGATTLDEYRKHIEKDPALER--RFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLP 405 (848)
Q Consensus 329 I~atn~~~~~~~~~~d~al~~--Rf~-~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~p 405 (848)
|++||.++ .+++++.| ||. .+.|+.|+.++|.+|++.++.+.. .. .+..+..++..+.+|.+.
T Consensus 158 i~atn~~~-----~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~----~~-~~~~~~~la~~~~g~sg~---- 223 (301)
T 3cf0_A 158 IGATNRPD-----IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSP----VA-KDVDLEFLAKMTNGFSGA---- 223 (301)
T ss_dssp EEEESCGG-----GSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC----BC-SSCCHHHHHHTCSSCCHH----
T ss_pred EEecCCcc-----ccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCC----CC-ccchHHHHHHHcCCCCHH----
Confidence 99999987 68999999 997 899999999999999988776432 11 223456677777666544
Q ss_pred hhHHHHHHHHhhH
Q 003094 406 DKAIDLIDEAGSR 418 (848)
Q Consensus 406 ~~a~~ll~~a~~~ 418 (848)
+...+++.|+..
T Consensus 224 -dl~~l~~~a~~~ 235 (301)
T 3cf0_A 224 -DLTEICQRACKL 235 (301)
T ss_dssp -HHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHH
Confidence 566666666543
No 45
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.78 E-value=4e-18 Score=179.39 Aligned_cols=201 Identities=24% Similarity=0.314 Sum_probs=145.5
Q ss_pred hhhhcCCCCCccCChHHHHHHHHHhc------------cCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceE
Q 003094 189 KLAEEGKLDPVVGRQPQIERVVQILG------------RRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKV 256 (848)
Q Consensus 189 ~~~~~~~ld~iiG~~~~~~~l~~~l~------------~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v 256 (848)
+...+..|++++|.++.++++.+.+. ...+.+++|+||||||||++++++++.+ +.++
T Consensus 4 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~----------~~~~ 73 (257)
T 1lv7_A 4 EDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA----------KVPF 73 (257)
T ss_dssp ECSSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH----------TCCE
T ss_pred ccCCCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc----------CCCE
Confidence 34456789999999998887766532 1346789999999999999999999988 4568
Q ss_pred EEEeCCcccccccccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCC---c---hHHHHHHHhhhhc----CCce
Q 003094 257 ITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAE---G---AIDAANILKPSLA----RGEL 326 (848)
Q Consensus 257 ~~~~~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~---~---~~~~~~~L~~~l~----~~~v 326 (848)
+.++++.+. ..+.|..+..+..++..+....++++||||+|.+....... + .....+.+...++ ...+
T Consensus 74 ~~i~~~~~~--~~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 151 (257)
T 1lv7_A 74 FTISGSDFV--EMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGI 151 (257)
T ss_dssp EEECSCSST--TSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCE
T ss_pred EEEeHHHHH--HHhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCE
Confidence 888888776 34567777888999999988888999999999997653321 1 1133444443333 5679
Q ss_pred EEEEeeChHHHHhhhhcChhhhc--ccC-CCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChH-HHHHHHhhhhcccccC
Q 003094 327 QCIGATTLDEYRKHIEKDPALER--RFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDE-ALVSAAQLSYQYISDR 402 (848)
Q Consensus 327 ~vI~atn~~~~~~~~~~d~al~~--Rf~-~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~-~l~~l~~~s~~~~~~~ 402 (848)
++|++||.++ .+++++.+ ||. .+.++.|+.++|.+|++.+++++ .++++ .+..++..+.+|
T Consensus 152 ~vI~~tn~~~-----~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~------~l~~~~~~~~la~~~~G~---- 216 (257)
T 1lv7_A 152 IVIAATNRPD-----VLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRV------PLAPDIDAAIIARGTPGF---- 216 (257)
T ss_dssp EEEEEESCTT-----TSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTS------CBCTTCCHHHHHHTCTTC----
T ss_pred EEEEeeCCch-----hCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcC------CCCccccHHHHHHHcCCC----
Confidence 9999999987 68999998 997 78999999999999998776532 23322 345555555443
Q ss_pred CChhhHHHHHHHHhh
Q 003094 403 FLPDKAIDLIDEAGS 417 (848)
Q Consensus 403 ~~p~~a~~ll~~a~~ 417 (848)
.+++...++..|..
T Consensus 217 -~~~dl~~l~~~a~~ 230 (257)
T 1lv7_A 217 -SGADLANLVNEAAL 230 (257)
T ss_dssp -CHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHH
Confidence 23455555555543
No 46
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.78 E-value=4.9e-18 Score=179.07 Aligned_cols=200 Identities=20% Similarity=0.267 Sum_probs=143.3
Q ss_pred CCCCCccCChHHHHHHHHHhc------------cCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeC
Q 003094 194 GKLDPVVGRQPQIERVVQILG------------RRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDM 261 (848)
Q Consensus 194 ~~ld~iiG~~~~~~~l~~~l~------------~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~ 261 (848)
.+|++++|.++.++.+.+.+. ...++++||+||||||||++|+++++.+ +.+++.+++
T Consensus 3 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~----------~~~~~~~~~ 72 (262)
T 2qz4_A 3 VSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA----------QVPFLAMAG 72 (262)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH----------TCCEEEEET
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCEEEech
Confidence 468999999999888766542 2456789999999999999999999988 567899999
Q ss_pred CcccccccccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCC-------chHHHHHHHhhhhc----CCceEEEE
Q 003094 262 GLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAE-------GAIDAANILKPSLA----RGELQCIG 330 (848)
Q Consensus 262 ~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~-------~~~~~~~~L~~~l~----~~~v~vI~ 330 (848)
+.+. ..+.+.....+..++..+....++||||||+|.+...+... ......+.+...++ ...+++|+
T Consensus 73 ~~~~--~~~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~ 150 (262)
T 2qz4_A 73 AEFV--EVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLA 150 (262)
T ss_dssp TTTS--SSSTTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEE
T ss_pred HHHH--hhccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEe
Confidence 8876 45667788889999999988889999999999997543221 11122233333332 35789999
Q ss_pred eeChHHHHhhhhcChhhhc--ccC-CCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChH-HHHHHHhhhhcccccCCChh
Q 003094 331 ATTLDEYRKHIEKDPALER--RFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDE-ALVSAAQLSYQYISDRFLPD 406 (848)
Q Consensus 331 atn~~~~~~~~~~d~al~~--Rf~-~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~-~l~~l~~~s~~~~~~~~~p~ 406 (848)
+||.++ .+++++.+ ||. .+.|+.|+.+++.+|++.++.+. +.....+ ....++..+.++.+ .
T Consensus 151 ~tn~~~-----~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~----~~~~~~~~~~~~l~~~~~g~~~-----~ 216 (262)
T 2qz4_A 151 STNRAD-----ILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSL----KLTQSSTFYSQRLAELTPGFSG-----A 216 (262)
T ss_dssp EESCGG-----GGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHT----TCCBTHHHHHHHHHHTCTTCCH-----H
T ss_pred cCCChh-----hcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhC----CCCcchhhHHHHHHHHCCCCCH-----H
Confidence 999887 57899999 996 89999999999999999888753 3444444 34667777766543 3
Q ss_pred hHHHHHHHHhhHH
Q 003094 407 KAIDLIDEAGSRV 419 (848)
Q Consensus 407 ~a~~ll~~a~~~~ 419 (848)
....+++.|...+
T Consensus 217 ~l~~l~~~a~~~a 229 (262)
T 2qz4_A 217 DIANICNEAALHA 229 (262)
T ss_dssp HHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHH
Confidence 5666777665443
No 47
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.78 E-value=1.2e-18 Score=193.61 Aligned_cols=199 Identities=22% Similarity=0.340 Sum_probs=149.3
Q ss_pred HhhccccChHHHHHHHHHHHHHH--------HccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccc
Q 003094 528 TLHKRVIGQDEAVKAISRAIRRA--------RVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSE 599 (848)
Q Consensus 528 ~l~~~vigq~~~~~~l~~~~~~~--------~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~ 599 (848)
..+++|.|.+.+++.|.+.+... ..|+..| ..+|||||||||||++|+++|..+ +.+|+.+++++
T Consensus 169 v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~p----rGiLL~GPPGtGKT~lakAiA~~~---~~~~~~v~~~~ 241 (428)
T 4b4t_K 169 VTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPP----RGVLLYGPPGTGKTMLVKAVANST---KAAFIRVNGSE 241 (428)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCC----CEEEEESCTTTTHHHHHHHHHHHH---TCEEEEEEGGG
T ss_pred CCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCC----ceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEecch
Confidence 45789999999999999888643 2355444 359999999999999999999998 88999999988
Q ss_pred cccccchhcccCCCCCCcccccc--cchhHHHHcCCCeEEEEcCCCcCC--------------hHHHHHHHhhhcCcEEE
Q 003094 600 FMERHTVSKLIGSPPGYVGYTEG--GQLTEAVRRRPYTVVLFDEIEKAH--------------PDVFNMMLQILEDGRLT 663 (848)
Q Consensus 600 ~~~~~~~~~l~g~~~g~~g~~~~--~~l~~~~~~~~~~Vl~lDEid~l~--------------~~~~~~Ll~~le~g~~~ 663 (848)
+... |+|..+. +.++..++...++||||||+|.+. ..+++.||..|++-.
T Consensus 242 l~~~------------~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~-- 307 (428)
T 4b4t_K 242 FVHK------------YLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFD-- 307 (428)
T ss_dssp TCCS------------SCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSC--
T ss_pred hhcc------------ccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCC--
Confidence 7543 7776554 567788888889999999999652 136788888887522
Q ss_pred cCCCceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhh--ccCeEEEcC-CC
Q 003094 664 DSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLN--RLDEMIVFR-QL 740 (848)
Q Consensus 664 ~~~g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~--R~d~~i~f~-~l 740 (848)
...+++||+|||.... ++|+|+. |||..|.|+ ++
T Consensus 308 -------~~~~v~vI~aTN~~~~------------------------------------LD~AllRpGRfd~~I~~p~lP 344 (428)
T 4b4t_K 308 -------QSTNVKVIMATNRADT------------------------------------LDPALLRPGRLDRKIEFPSLR 344 (428)
T ss_dssp -------SSCSEEEEEEESCSSS------------------------------------CCHHHHSSSSEEEEEECCSSC
T ss_pred -------CCCCEEEEEecCChhh------------------------------------cChhhhcCCcceEEEEcCCCC
Confidence 1257899999995543 6799986 999999996 67
Q ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCeEeecHH-HHHHHHHccCCCCCCchHHHHHHHHHHHHHH
Q 003094 741 TKLEVKEIADIMLKEVFDRLKTKDIELQVTER-FRERVVEEGYNPSYGARPLRRAIMRLLEDSM 803 (848)
Q Consensus 741 ~~~el~~I~~~~l~~~~~~~~~~~~~l~i~~~-a~~~l~~~~~~~~~g~r~L~~~i~~~l~~~l 803 (848)
+.++...|+..++..+ . ++++ -++.|+. ....+.+.+|+..++.+...++
T Consensus 345 d~~~R~~Il~~~~~~~---------~--l~~~~dl~~lA~--~t~G~sgadi~~l~~eA~~~a~ 395 (428)
T 4b4t_K 345 DRRERRLIFGTIASKM---------S--LAPEADLDSLII--RNDSLSGAVIAAIMQEAGLRAV 395 (428)
T ss_dssp CHHHHHHHHHHHHHSS---------C--BCTTCCHHHHHH--HTTTCCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCC---------C--CCcccCHHHHHH--HCCCCCHHHHHHHHHHHHHHHH
Confidence 8999999998776531 1 1221 1466666 3445677889888887665544
No 48
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.77 E-value=4.4e-18 Score=185.14 Aligned_cols=209 Identities=17% Similarity=0.246 Sum_probs=159.5
Q ss_pred hccccChHHHHHHHHHHHHHHHc---cCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccch
Q 003094 530 HKRVIGQDEAVKAISRAIRRARV---GLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTV 606 (848)
Q Consensus 530 ~~~vigq~~~~~~l~~~~~~~~~---~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~ 606 (848)
+++++|++.+++.|...+..... .......|..++||+||||||||++|+++|+.+ +.+|+.++++++...
T Consensus 17 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~---~~~~~~v~~~~l~~~--- 90 (322)
T 3eie_A 17 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSSSDLVSK--- 90 (322)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH---TCEEEEEEHHHHHTT---
T ss_pred HHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH---CCCEEEEchHHHhhc---
Confidence 56899999999999998865432 111223455679999999999999999999998 788999998876432
Q ss_pred hcccCCCCCCcccccc--cchhHHHHcCCCeEEEEcCCCcCCh-----------HHHHHHHhhhcCcEEEcCCCceeecC
Q 003094 607 SKLIGSPPGYVGYTEG--GQLTEAVRRRPYTVVLFDEIEKAHP-----------DVFNMMLQILEDGRLTDSKGRTVDFK 673 (848)
Q Consensus 607 ~~l~g~~~g~~g~~~~--~~l~~~~~~~~~~Vl~lDEid~l~~-----------~~~~~Ll~~le~g~~~~~~g~~v~~~ 673 (848)
|.|..+. ..++..++...++||||||||.+.+ .+++.|+..|+.-. ....
T Consensus 91 ---------~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~--------~~~~ 153 (322)
T 3eie_A 91 ---------WMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVG--------NDSQ 153 (322)
T ss_dssp ---------TGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGG--------TSCC
T ss_pred ---------ccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcccc--------ccCC
Confidence 4444332 4466677778889999999998864 46888888887521 0124
Q ss_pred CeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHHHHH
Q 003094 674 NTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIML 753 (848)
Q Consensus 674 ~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~~~l 753 (848)
+++||+|||.... +++++++||+..+.|++++.++..+|+...+
T Consensus 154 ~v~vi~atn~~~~------------------------------------ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~ 197 (322)
T 3eie_A 154 GVLVLGATNIPWQ------------------------------------LDSAIRRRFERRIYIPLPDLAARTTMFEINV 197 (322)
T ss_dssp CEEEEEEESCGGG------------------------------------SCHHHHHHCCEEEECCCCCHHHHHHHHHHHH
T ss_pred ceEEEEecCChhh------------------------------------CCHHHHcccCeEEEeCCCCHHHHHHHHHHHh
Confidence 6889999984332 6789999999999999999999999998766
Q ss_pred HHHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 003094 754 KEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSMAEKML 808 (848)
Q Consensus 754 ~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~l~~~l~~~~l 808 (848)
.. ....+++..++.|+. ....+..++++..++.....++.+..-
T Consensus 198 ~~---------~~~~~~~~~l~~la~--~t~g~sg~di~~l~~~a~~~a~r~~~~ 241 (322)
T 3eie_A 198 GD---------TPCVLTKEDYRTLGA--MTEGYSGSDIAVVVKDALMQPIRKIQS 241 (322)
T ss_dssp TT---------CCCCCCHHHHHHHHH--TTTTCCHHHHHHHHHHHTTHHHHHHHH
T ss_pred cc---------CCCCCCHHHHHHHHH--HcCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 43 333468889999998 556677899999998888888877643
No 49
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.77 E-value=7.9e-18 Score=184.57 Aligned_cols=202 Identities=18% Similarity=0.247 Sum_probs=153.6
Q ss_pred HHHHhhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEeccccccccc
Q 003094 525 MEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 604 (848)
Q Consensus 525 l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~ 604 (848)
+++.-+++++|++.+++.+...+...... ..+..++||+||||||||++|+++|+.+ +.+|+.++|..+...
T Consensus 23 ~~p~~~~~iiG~~~~~~~l~~~l~~~~~~----~~~~~~vll~G~~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~- 94 (338)
T 3pfi_A 23 LRPSNFDGYIGQESIKKNLNVFIAAAKKR----NECLDHILFSGPAGLGKTTLANIISYEM---SANIKTTAAPMIEKS- 94 (338)
T ss_dssp CCCCSGGGCCSCHHHHHHHHHHHHHHHHT----TSCCCCEEEECSTTSSHHHHHHHHHHHT---TCCEEEEEGGGCCSH-
T ss_pred cCCCCHHHhCChHHHHHHHHHHHHHHHhc----CCCCCeEEEECcCCCCHHHHHHHHHHHh---CCCeEEecchhccch-
Confidence 33345678999999999999999876432 2233469999999999999999999987 678998888765311
Q ss_pred chhcccCCCCCCcccccccchhHHHH-cCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCC-------CceeecCCeE
Q 003094 605 TVSKLIGSPPGYVGYTEGGQLTEAVR-RRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSK-------GRTVDFKNTL 676 (848)
Q Consensus 605 ~~~~l~g~~~g~~g~~~~~~l~~~~~-~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~-------g~~v~~~~~i 676 (848)
+.+...+. .+.+++||||||+.+++..++.|++.|+++.+.... ...++.++++
T Consensus 95 ------------------~~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (338)
T 3pfi_A 95 ------------------GDLAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFT 156 (338)
T ss_dssp ------------------HHHHHHHHTCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCE
T ss_pred ------------------hHHHHHHHhccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeE
Confidence 22333333 356789999999999999999999999998754322 2233445689
Q ss_pred EEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHHHHHHHH
Q 003094 677 LIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEV 756 (848)
Q Consensus 677 iI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~~~l~~~ 756 (848)
+|++||... .++++|++||+.++.|++++.+++..++...+..
T Consensus 157 ~i~atn~~~------------------------------------~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~- 199 (338)
T 3pfi_A 157 LIGATTRAG------------------------------------MLSNPLRDRFGMQFRLEFYKDSELALILQKAALK- 199 (338)
T ss_dssp EEEEESCGG------------------------------------GSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHH-
T ss_pred EEEeCCCcc------------------------------------ccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHh-
Confidence 999998422 2678999999999999999999999998876654
Q ss_pred HHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHHHHHH
Q 003094 757 FDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLE 800 (848)
Q Consensus 757 ~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~l~ 800 (848)
..+.+++++++.|+. .|+++.|.+.+.+++++.
T Consensus 200 --------~~~~~~~~~~~~l~~---~~~G~~r~l~~~l~~~~~ 232 (338)
T 3pfi_A 200 --------LNKTCEEKAALEIAK---RSRSTPRIALRLLKRVRD 232 (338)
T ss_dssp --------TTCEECHHHHHHHHH---TTTTCHHHHHHHHHHHHH
T ss_pred --------cCCCCCHHHHHHHHH---HHCcCHHHHHHHHHHHHH
Confidence 224689999999998 456778888888887643
No 50
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.77 E-value=9.1e-18 Score=189.74 Aligned_cols=199 Identities=23% Similarity=0.301 Sum_probs=152.0
Q ss_pred CCCCCccCChHHHHHHHHHhc------------cCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeC
Q 003094 194 GKLDPVVGRQPQIERVVQILG------------RRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDM 261 (848)
Q Consensus 194 ~~ld~iiG~~~~~~~l~~~l~------------~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~ 261 (848)
.+|++++|.++.++++.+++. ...++++||+||||||||+++++++..+ +.+++.+++
T Consensus 13 ~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~----------~~~f~~is~ 82 (476)
T 2ce7_A 13 VTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA----------NVPFFHISG 82 (476)
T ss_dssp CCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH----------TCCEEEEEG
T ss_pred CCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc----------CCCeeeCCH
Confidence 468999999998887766532 2346789999999999999999999988 567899998
Q ss_pred CcccccccccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCC------CchHHHHHHHhhhhc----CCceEEEEe
Q 003094 262 GLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAA------EGAIDAANILKPSLA----RGELQCIGA 331 (848)
Q Consensus 262 ~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~------~~~~~~~~~L~~~l~----~~~v~vI~a 331 (848)
+.+. ..+.|....+++.+|..+....|+||||||+|.+.+.+.. ......++.|...++ ..+++||++
T Consensus 83 ~~~~--~~~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaa 160 (476)
T 2ce7_A 83 SDFV--ELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAA 160 (476)
T ss_dssp GGTT--TCCTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEE
T ss_pred HHHH--HHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEe
Confidence 8887 4567888888999999999889999999999999765321 112234555555553 457999999
Q ss_pred eChHHHHhhhhcChhhhc--ccC-CCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCCh-HHHHHHHhhhhcccccCCChhh
Q 003094 332 TTLDEYRKHIEKDPALER--RFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTD-EALVSAAQLSYQYISDRFLPDK 407 (848)
Q Consensus 332 tn~~~~~~~~~~d~al~~--Rf~-~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~-~~l~~l~~~s~~~~~~~~~p~~ 407 (848)
||.++ .+|+++.| ||+ .|.|+.|+.++|.+|++.++++. .+.+ ..+..++..+.++.+ ++
T Consensus 161 Tn~~~-----~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~------~l~~~v~l~~la~~t~G~sg-----ad 224 (476)
T 2ce7_A 161 TNRPD-----ILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNK------PLAEDVNLEIIAKRTPGFVG-----AD 224 (476)
T ss_dssp ESCGG-----GSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTS------CBCTTCCHHHHHHTCTTCCH-----HH
T ss_pred cCChh-----hhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhC------CCcchhhHHHHHHhcCCCcH-----HH
Confidence 99987 68999998 998 89999999999999998776532 2222 236778887777653 35
Q ss_pred HHHHHHHHhhHHH
Q 003094 408 AIDLIDEAGSRVR 420 (848)
Q Consensus 408 a~~ll~~a~~~~~ 420 (848)
...++.+|...+.
T Consensus 225 L~~lv~~Aal~A~ 237 (476)
T 2ce7_A 225 LENLVNEAALLAA 237 (476)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6777777765554
No 51
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.76 E-value=1.1e-17 Score=181.06 Aligned_cols=210 Identities=20% Similarity=0.276 Sum_probs=157.9
Q ss_pred CC-CccCChHHHHHHHHHhc---------------cCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEE
Q 003094 196 LD-PVVGRQPQIERVVQILG---------------RRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITL 259 (848)
Q Consensus 196 ld-~iiG~~~~~~~l~~~l~---------------~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~ 259 (848)
++ +++|+++.++.|.+.+. .....++||+||||||||++|+++++.+..... ....+++.+
T Consensus 29 l~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~---~~~~~~~~~ 105 (309)
T 3syl_A 29 LDRELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGY---VRKGHLVSV 105 (309)
T ss_dssp HHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTS---SSSCCEEEE
T ss_pred HHHHccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCC---cCCCcEEEE
Confidence 44 69999999998876643 345567999999999999999999999865321 224578899
Q ss_pred eCCcccccccccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCC-CchHHHHHHHhhhhcC--CceEEEEeeChHH
Q 003094 260 DMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAA-EGAIDAANILKPSLAR--GELQCIGATTLDE 336 (848)
Q Consensus 260 ~~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~-~~~~~~~~~L~~~l~~--~~v~vI~atn~~~ 336 (848)
+++.+. ..+.|.....+..++..+ .+.||||||+|.+.+.+.. ......++.|...++. ..+++|++||...
T Consensus 106 ~~~~l~--~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~ 180 (309)
T 3syl_A 106 TRDDLV--GQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADR 180 (309)
T ss_dssp CGGGTC--CSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHH
T ss_pred cHHHhh--hhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHH
Confidence 988876 456777777777777765 3569999999999754332 2355678888888874 4689999999987
Q ss_pred HHhhhhcChhhhccc-CCCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccC--CChhhHHHHHH
Q 003094 337 YRKHIEKDPALERRF-QPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDR--FLPDKAIDLID 413 (848)
Q Consensus 337 ~~~~~~~d~al~~Rf-~~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~--~~p~~a~~ll~ 413 (848)
+.....++|+|.+|| ..+.|++|+.+++.+|++.++.+ .+..++++++..++.......... ...+.+..+++
T Consensus 181 ~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~----~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~ 256 (309)
T 3syl_A 181 MENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDD----QNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALD 256 (309)
T ss_dssp HHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHH----TTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHH
T ss_pred HHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHH
Confidence 777777899999999 59999999999999999988874 467789999988887655221111 11345566666
Q ss_pred HHhh
Q 003094 414 EAGS 417 (848)
Q Consensus 414 ~a~~ 417 (848)
.++.
T Consensus 257 ~a~~ 260 (309)
T 3syl_A 257 RARL 260 (309)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6554
No 52
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.76 E-value=3.1e-18 Score=193.42 Aligned_cols=199 Identities=22% Similarity=0.282 Sum_probs=154.2
Q ss_pred hhhhhhhhcCCCCCccCChHHH---HHHHHHhccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeC
Q 003094 185 TNLTKLAEEGKLDPVVGRQPQI---ERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDM 261 (848)
Q Consensus 185 ~~l~~~~~~~~ld~iiG~~~~~---~~l~~~l~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~ 261 (848)
.+|.++++|.+|++++|++..+ +.|...+......++||+||||||||++|+.+++.+ +.+++.++.
T Consensus 14 ~pla~r~rP~~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~----------~~~f~~l~a 83 (447)
T 3pvs_A 14 QPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA----------NADVERISA 83 (447)
T ss_dssp CCHHHHTCCCSTTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT----------TCEEEEEET
T ss_pred CChHHHhCCCCHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh----------CCCeEEEEe
Confidence 4799999999999999999999 788888888888899999999999999999999988 466777775
Q ss_pred CcccccccccchHHHHHHHHHHHHH----hCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCCceEEEEeeChHHH
Q 003094 262 GLLVAGTKYRGEFEERLKKLMEEIK----QSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATTLDEY 337 (848)
Q Consensus 262 ~~l~~~~~~~g~~~~~l~~l~~~~~----~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~atn~~~~ 337 (848)
.... .. .++.++..+. .+.+.||||||+|.+... .++.|++.++.+.+++|++|+....
T Consensus 84 ~~~~-----~~----~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~--------~q~~LL~~le~~~v~lI~att~n~~ 146 (447)
T 3pvs_A 84 VTSG-----VK----EIREAIERARQNRNAGRRTILFVDEVHRFNKS--------QQDAFLPHIEDGTITFIGATTENPS 146 (447)
T ss_dssp TTCC-----HH----HHHHHHHHHHHHHHTTCCEEEEEETTTCC--------------CCHHHHHTTSCEEEEEESSCGG
T ss_pred ccCC-----HH----HHHHHHHHHHHhhhcCCCcEEEEeChhhhCHH--------HHHHHHHHHhcCceEEEecCCCCcc
Confidence 4321 12 2333443333 356789999999999543 5677888899999999999976543
Q ss_pred HhhhhcChhhhcccCCCcCCCCCHHHHHHHHHHHHHHHhhh---hcCCCChHHHHHHHhhhhcccccCCChhhHHHHHHH
Q 003094 338 RKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIH---HKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDE 414 (848)
Q Consensus 338 ~~~~~~d~al~~Rf~~i~~~~p~~~e~~~Il~~~~~~~~~~---~~~~~s~~~l~~l~~~s~~~~~~~~~p~~a~~ll~~ 414 (848)
..+++++.+||..+.|++|+.+++..+++..+...... ..+.++++++..++..+.+. .+.+..+|+.
T Consensus 147 ---~~l~~aL~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd------~R~lln~Le~ 217 (447)
T 3pvs_A 147 ---FELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGD------ARRALNTLEM 217 (447)
T ss_dssp ---GSSCHHHHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSC------HHHHHHHHHH
T ss_pred ---cccCHHHhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCC------HHHHHHHHHH
Confidence 37899999999999999999999999999888753222 44678999999999987664 4457788877
Q ss_pred HhhHH
Q 003094 415 AGSRV 419 (848)
Q Consensus 415 a~~~~ 419 (848)
+...+
T Consensus 218 a~~~a 222 (447)
T 3pvs_A 218 MADMA 222 (447)
T ss_dssp HHHHS
T ss_pred HHHhc
Confidence 76543
No 53
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.76 E-value=2.5e-17 Score=178.85 Aligned_cols=211 Identities=18% Similarity=0.227 Sum_probs=158.5
Q ss_pred hhccccChHHHHHHHHHHHHHHHcc---CCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccc
Q 003094 529 LHKRVIGQDEAVKAISRAIRRARVG---LKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHT 605 (848)
Q Consensus 529 l~~~vigq~~~~~~l~~~~~~~~~~---~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~ 605 (848)
-+++|+|++.+++.|.+.+...... ......|..++||+||||||||++|+++|+.+ .+.+|+.++++++...
T Consensus 10 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~--~~~~~~~i~~~~l~~~-- 85 (322)
T 1xwi_A 10 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA--NNSTFFSISSSDLVSK-- 85 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHT--TSCEEEEEECCSSCCS--
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHc--CCCcEEEEEhHHHHhh--
Confidence 3678999999999999888654210 01112344579999999999999999999986 3568888888876432
Q ss_pred hhcccCCCCCCcccccc--cchhHHHHcCCCeEEEEcCCCcCCh-----------HHHHHHHhhhcCcEEEcCCCceeec
Q 003094 606 VSKLIGSPPGYVGYTEG--GQLTEAVRRRPYTVVLFDEIEKAHP-----------DVFNMMLQILEDGRLTDSKGRTVDF 672 (848)
Q Consensus 606 ~~~l~g~~~g~~g~~~~--~~l~~~~~~~~~~Vl~lDEid~l~~-----------~~~~~Ll~~le~g~~~~~~g~~v~~ 672 (848)
|.|..+. ..++..++...++||||||+|.+.+ .+++.|+..|++-. ...
T Consensus 86 ----------~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~--------~~~ 147 (322)
T 1xwi_A 86 ----------WLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVG--------VDN 147 (322)
T ss_dssp ----------SCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSS--------SCC
T ss_pred ----------hhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhccc--------ccC
Confidence 4444332 4466667777889999999998832 47788888887522 123
Q ss_pred CCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHHHH
Q 003094 673 KNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIM 752 (848)
Q Consensus 673 ~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~~~ 752 (848)
.+++||++||.... +++++++||+..+.+++++.++..+|+...
T Consensus 148 ~~v~vI~atn~~~~------------------------------------ld~al~rRf~~~i~i~~P~~~~r~~il~~~ 191 (322)
T 1xwi_A 148 DGILVLGATNIPWV------------------------------------LDSAIRRRFEKRIYIPLPEPHARAAMFKLH 191 (322)
T ss_dssp TTEEEEEEESCTTT------------------------------------SCHHHHHTCCEEEECCCCCHHHHHHHHHHH
T ss_pred CCEEEEEecCCccc------------------------------------CCHHHHhhcCeEEEeCCcCHHHHHHHHHHH
Confidence 57899999985432 578999999999999999999999999776
Q ss_pred HHHHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 003094 753 LKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSMAEKML 808 (848)
Q Consensus 753 l~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~l~~~l~~~~l 808 (848)
+.. ....+++..++.|+. ....+..++|+..++.....++-+.+-
T Consensus 192 l~~---------~~~~l~~~~l~~la~--~t~G~sgadl~~l~~~A~~~a~r~~~~ 236 (322)
T 1xwi_A 192 LGT---------TQNSLTEADFRELGR--KTDGYSGADISIIVRDALMQPVRKVQS 236 (322)
T ss_dssp HTT---------CCBCCCHHHHHHHHH--TCTTCCHHHHHHHHHHHHTHHHHHHHH
T ss_pred Hhc---------CCCCCCHHHHHHHHH--HcCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 643 233468889999998 556677899999999999888877643
No 54
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.76 E-value=1.2e-16 Score=210.15 Aligned_cols=452 Identities=16% Similarity=0.191 Sum_probs=243.6
Q ss_pred CCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccccccccchHHHHHHHHHHHHH----------
Q 003094 217 TKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIK---------- 286 (848)
Q Consensus 217 ~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~~~~g~~~~~l~~l~~~~~---------- 286 (848)
...++||+||||||||++|+.+.... .+..++.++++..... ..+...++...
T Consensus 1266 ~~~~vLL~GPpGtGKT~la~~~l~~~---------~~~~~~~infsa~ts~--------~~~~~~i~~~~~~~~~~~g~~ 1328 (2695)
T 4akg_A 1266 SKRGIILCGPPGSGKTMIMNNALRNS---------SLYDVVGINFSKDTTT--------EHILSALHRHTNYVTTSKGLT 1328 (2695)
T ss_dssp HTCEEEEECSTTSSHHHHHHHHHHSC---------SSCEEEEEECCTTCCH--------HHHHHHHHHHBCCEEETTTEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHhcC---------CCCceEEEEeecCCCH--------HHHHHHHHHHhhhccccCCcc
Confidence 45799999999999999996665433 2466788887765532 12333333320
Q ss_pred -----hCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCC--------------ceEEEEeeChHHHHhhhhcChhh
Q 003094 287 -----QSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARG--------------ELQCIGATTLDEYRKHIEKDPAL 347 (848)
Q Consensus 287 -----~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~--------------~v~vI~atn~~~~~~~~~~d~al 347 (848)
.+.++||||||+|.. ..+..+.....+.|+++++.+ ++++|+|||++...+...+++++
T Consensus 1329 ~~P~~~gk~~VlFiDEinmp--~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rl 1406 (2695)
T 4akg_A 1329 LLPKSDIKNLVLFCDEINLP--KLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERF 1406 (2695)
T ss_dssp EEEBSSSSCEEEEEETTTCS--CCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHH
T ss_pred ccCCCCCceEEEEecccccc--cccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhh
Confidence 123479999999973 334445566778888888743 27899999998533455799999
Q ss_pred hcccCCCcCCCCCHHHHHHHHHHHHHHHhhhh-cC-CCChHHHHHHHhh----hhccccc-----CCChhhHHHHHHHHh
Q 003094 348 ERRFQPVKVPEPSVDETIQILKGLRERYEIHH-KL-RYTDEALVSAAQL----SYQYISD-----RFLPDKAIDLIDEAG 416 (848)
Q Consensus 348 ~~Rf~~i~~~~p~~~e~~~Il~~~~~~~~~~~-~~-~~s~~~l~~l~~~----s~~~~~~-----~~~p~~a~~ll~~a~ 416 (848)
.|||..+.++.|+.+++..|+..++....... .+ .+.+..+.+...+ ...+.+. .+.+++...++.-.+
T Consensus 1407 lRrf~vi~i~~P~~~~l~~I~~~il~~~l~~~~~v~~~~~~lv~ati~~y~~v~~~~~~~~k~HY~FnlRDLsrv~qGll 1486 (2695)
T 4akg_A 1407 TRHAAILYLGYPSGKSLSQIYEIYYKAIFKLVPEFRSYTEPFARASVHLYNECKARYSTGLQSHYLFSPRELTRLVRGVY 1486 (2695)
T ss_dssp HTTEEEEECCCCTTTHHHHHHHHHHHHHTTSSGGGGGGHHHHHHHHHHHHHHHHHHSCTTTCTTCCCCHHHHHHHHHHHH
T ss_pred hheeeEEEeCCCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCcccCHHHHHHHHHHHH
Confidence 99999999999999999999998876542110 01 1122222222221 1111111 223444444333322
Q ss_pred hHHHHhhcCCchHHHH-HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHh-hhhhhhhh----h--cc-
Q 003094 417 SRVRLRHAQLPEEARE-LEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDK-GKEMSKAE----T--EA- 487 (848)
Q Consensus 417 ~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~-~~~~~~~~----~--~~- 487 (848)
....-........+-. .-+|...+.. +..+...|-. .....+...... +....... . .+
T Consensus 1487 ~~~~~~~~~~~~~l~rLw~HE~~Rvf~--DRLv~~~D~~----------~f~~~l~~~~~~~f~~~~~~~~~~~~~~f~d 1554 (2695)
T 4akg_A 1487 TAINTGPRQTLRSLIRLWAYEAWRIFA--DRLVGVKEKN----------SFEQLLYETVDKYLPNQDLGNISSTSLLFSG 1554 (2695)
T ss_dssp HHHHTSSCCCHHHHHHHHHHHHHHHHT--TTCCSSHHHH----------HHHHHHHHHHHHHSCCSCCCCCSTTTCCEES
T ss_pred hcCchhhhccHHHHHHHHHHHHHHHHH--HhcCCHHHHH----------HHHHHHHHHHHHHhcccchhhhccCCceeee
Confidence 1110000011111111 1111111110 0011110000 011111111111 10000000 0 00
Q ss_pred --CCCCCccCHHHHHHHHHHhhCCCCcccCcchHHHHHHHHH-HhhccccChHHHHHHHHHHHHHHHccCCCCCCCceEE
Q 003094 488 --GDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEE-TLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASF 564 (848)
Q Consensus 488 --~~~~~~v~~~di~~~~~~~~g~p~~~~~~~~~~~l~~l~~-~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~l 564 (848)
......++.+++...+. ..+..+.+ ...-+++--+++++++.+..+-. +.|.+|+
T Consensus 1555 f~~~~Y~~v~~~~l~~~l~---------------~~l~~yn~~~~~m~LVlF~dai~Hi~RI~Ril-------~~p~G~~ 1612 (2695)
T 4akg_A 1555 LLSLDFKEVNKTDLVNFIE---------------ERFKTFCDEELEVPMVIHESMVDHILRIDRAL-------KQVQGHM 1612 (2695)
T ss_dssp SSSSSCEECCHHHHHHHHH---------------HHHHHHHHHSCCCCCCCCHHHHHHHHHHHHHH-------HSSSEEE
T ss_pred cCCCcceecCHHHHHHHHH---------------HHHHHHHhhcCCceeeeHHHHHHHHHHHHHHH-------cCCCCCE
Confidence 00011111111111110 00111111 01125777788999998887766 3567899
Q ss_pred EeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhcccCCCCCCcccccccchhHHH----HcCCCeEEEEc
Q 003094 565 IFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAV----RRRPYTVVLFD 640 (848)
Q Consensus 565 Ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~----~~~~~~Vl~lD 640 (848)
||+|++|+||++++|..|... +..++.+.++.-++... -...+...+ -+..+.|++|+
T Consensus 1613 LLvGvgGsGkqSltrLaa~i~---~~~~fqi~~~~~Y~~~~---------------f~eDLk~l~~~aG~~~~~~vFL~t 1674 (2695)
T 4akg_A 1613 MLIGASRTGKTILTRFVAWLN---GLKIVQPKIHRHSNLSD---------------FDMILKKAISDCSLKESRTCLIID 1674 (2695)
T ss_dssp EEECTTTSCHHHHHHHHHHHT---TCEEECCCCCTTCCHHH---------------HHHHHHHHHHHHHHSCCCEEEEEE
T ss_pred EEECCCCCcHHHHHHHHHHHh---CCeeEEEEeeCCCCHHH---------------HHHHHHHHHHHcCCCCCceEEEEe
Confidence 999999999999999999876 66777766654322110 011222222 34667899999
Q ss_pred CCCcCChHHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCchhhhc---cCcccccccCCCcccccHHHHHHHHHH
Q 003094 641 EIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEK---GGRRIGFDLDYDEKDSSYNRIKSLVTE 717 (848)
Q Consensus 641 Eid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~i~~---~~~~~~f~~~~~~~~~~~~~~~~~~~~ 717 (848)
|.+-..+.+++.+..+|..|++++..... --..++.. .....|+. ..+.+..+..+.+.+++
T Consensus 1675 D~qi~~e~FLE~IN~lL~sGEVP~LF~~d-------------E~~~i~~~~r~~~~~~g~~--~~t~~~l~~~Fi~rvr~ 1739 (2695)
T 4akg_A 1675 ESNILETAFLERMNTLLANADIPDLFQGE-------------EYDKLLNNLRNKTRSLGLL--LDTEQELYDWFVGEIAK 1739 (2695)
T ss_dssp TTTCCSHHHHHHHHHHHHSSSCTTTSCTH-------------HHHHHHHHHHHHHHHHTCC--CCSHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHccCCCCCCCCHH-------------HHHHHHHHhHHHHHhcCCC--CCCHHHHHHHHHHHHHH
Confidence 99999999999999999999876432100 00000000 00111111 11223445555555555
Q ss_pred HHHhhc---------------ChhhhhccCeEEEcCCCCHHHHHHHHHHHHHH
Q 003094 718 ELKQYF---------------RPEFLNRLDEMIVFRQLTKLEVKEIADIMLKE 755 (848)
Q Consensus 718 ~l~~~~---------------~~~ll~R~d~~i~f~~l~~~el~~I~~~~l~~ 755 (848)
+|+-.+ -|+|+++| .+-+|.+++.+.+..+...+|.+
T Consensus 1740 NLHvVL~mSP~g~~fr~R~r~fPaLvn~c-tIdWf~~Wp~eAL~~Va~~fl~~ 1791 (2695)
T 4akg_A 1740 NLHVVFTICDPTNNKSSAMISSPALFNRC-IINWMGDWDTKTMSQVANNMVDV 1791 (2695)
T ss_dssp HCEEEEEESCTTSHHHHHHHHSHHHHHHS-EEEECCSCCHHHHHHHHHHHSCS
T ss_pred cCEEEEEECCCChHHHHHHHhChHhhcce-eEeecCCCCHHHHHHHHHHHhhc
Confidence 553211 38999999 99999999999999999888754
No 55
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.75 E-value=1.9e-17 Score=182.40 Aligned_cols=210 Identities=17% Similarity=0.240 Sum_probs=155.5
Q ss_pred HhhccccChHHHHHHHHHHHHHHHc---cCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEeccccccccc
Q 003094 528 TLHKRVIGQDEAVKAISRAIRRARV---GLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 604 (848)
Q Consensus 528 ~l~~~vigq~~~~~~l~~~~~~~~~---~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~ 604 (848)
.-+++|+|++.+++.|...+..... .......|..++||+||||||||++|+++|+.+ +.+++.++++++...
T Consensus 48 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~---~~~~~~v~~~~l~~~- 123 (355)
T 2qp9_X 48 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSSSDLVSK- 123 (355)
T ss_dssp CCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH---TCEEEEEEHHHHHSC-
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCCEEEeeHHHHhhh-
Confidence 3467899999999999988864411 001112344569999999999999999999998 788999988876432
Q ss_pred chhcccCCCCCCcccccc--cchhHHHHcCCCeEEEEcCCCcCCh-----------HHHHHHHhhhcCcEEEcCCCceee
Q 003094 605 TVSKLIGSPPGYVGYTEG--GQLTEAVRRRPYTVVLFDEIEKAHP-----------DVFNMMLQILEDGRLTDSKGRTVD 671 (848)
Q Consensus 605 ~~~~l~g~~~g~~g~~~~--~~l~~~~~~~~~~Vl~lDEid~l~~-----------~~~~~Ll~~le~g~~~~~~g~~v~ 671 (848)
|.|..+. ..++..++...++||||||+|.+.+ .+++.|+..|+.-.- .
T Consensus 124 -----------~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~--------~ 184 (355)
T 2qp9_X 124 -----------WMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGN--------D 184 (355)
T ss_dssp -----------C---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC----------
T ss_pred -----------hcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccc--------c
Confidence 3343322 3456666677889999999999874 368888888874210 1
Q ss_pred cCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHHH
Q 003094 672 FKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADI 751 (848)
Q Consensus 672 ~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~~ 751 (848)
..+++||++||... .+++++++||+..+.+++++.++..+|+..
T Consensus 185 ~~~v~vI~atn~~~------------------------------------~ld~al~rRf~~~i~i~~P~~~~r~~il~~ 228 (355)
T 2qp9_X 185 SQGVLVLGATNIPW------------------------------------QLDSAIRRRFERRIYIPLPDLAARTTMFEI 228 (355)
T ss_dssp -CCEEEEEEESCGG------------------------------------GSCHHHHHTCCEEEECCCCCHHHHHHHHHH
T ss_pred CCCeEEEeecCCcc------------------------------------cCCHHHHcccCEEEEeCCcCHHHHHHHHHH
Confidence 25688999998433 257899999999999999999999999977
Q ss_pred HHHHHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHHHHHHHHHHHHH
Q 003094 752 MLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSMAEKM 807 (848)
Q Consensus 752 ~l~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~l~~~l~~~~ 807 (848)
.+.. ....+++..++.|+. ....+..++|+.+++.++..++.+..
T Consensus 229 ~l~~---------~~~~~~~~~l~~la~--~t~G~sg~dl~~l~~~A~~~a~~~~~ 273 (355)
T 2qp9_X 229 NVGD---------TPSVLTKEDYRTLGA--MTEGYSGSDIAVVVKDALMQPIRKIQ 273 (355)
T ss_dssp HHTT---------SCBCCCHHHHHHHHH--HTTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhh---------CCCCCCHHHHHHHHH--HcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 6643 223467888999998 44556789999999999988887764
No 56
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.74 E-value=9.7e-17 Score=175.88 Aligned_cols=193 Identities=20% Similarity=0.272 Sum_probs=142.9
Q ss_pred hhhhhhhhhcCCCCCccCChHHHHHHHHHhcc-----CCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEE
Q 003094 184 GTNLTKLAEEGKLDPVVGRQPQIERVVQILGR-----RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVIT 258 (848)
Q Consensus 184 ~~~l~~~~~~~~ld~iiG~~~~~~~l~~~l~~-----~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~ 258 (848)
...|.++++|..+++++|+++.++.+...+.. ....++||+||||||||++|+++++.+ +.+++.
T Consensus 16 ~~~~~~~~~p~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~----------~~~~~~ 85 (338)
T 3pfi_A 16 DETYETSLRPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEM----------SANIKT 85 (338)
T ss_dssp -------CCCCSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHT----------TCCEEE
T ss_pred hhhhhhccCCCCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHh----------CCCeEE
Confidence 34688899999999999999999988887753 556789999999999999999999987 456888
Q ss_pred EeCCcccccccccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCCc-------------
Q 003094 259 LDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGE------------- 325 (848)
Q Consensus 259 ~~~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~~------------- 325 (848)
+++..+.. .+ .+...+.. ...+.+|||||+|.+. .+.++.|...++.+.
T Consensus 86 ~~~~~~~~----~~----~~~~~~~~--~~~~~vl~lDEi~~l~--------~~~~~~Ll~~l~~~~~~~~~~~~~~~~~ 147 (338)
T 3pfi_A 86 TAAPMIEK----SG----DLAAILTN--LSEGDILFIDEIHRLS--------PAIEEVLYPAMEDYRLDIIIGSGPAAQT 147 (338)
T ss_dssp EEGGGCCS----HH----HHHHHHHT--CCTTCEEEEETGGGCC--------HHHHHHHHHHHHTSCC---------CCC
T ss_pred ecchhccc----hh----HHHHHHHh--ccCCCEEEEechhhcC--------HHHHHHHHHHHHhccchhhcccCccccc
Confidence 88765531 12 22222222 2457799999999984 346777777776443
Q ss_pred -------eEEEEeeChHHHHhhhhcChhhhcccC-CCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhc
Q 003094 326 -------LQCIGATTLDEYRKHIEKDPALERRFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQ 397 (848)
Q Consensus 326 -------v~vI~atn~~~~~~~~~~d~al~~Rf~-~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~ 397 (848)
+.+|++||... .+++++.+||. .+.|++|+.+++..++...... .+..++++++..++..+.+
T Consensus 148 ~~~~~~~~~~i~atn~~~-----~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~----~~~~~~~~~~~~l~~~~~G 218 (338)
T 3pfi_A 148 IKIDLPKFTLIGATTRAG-----MLSNPLRDRFGMQFRLEFYKDSELALILQKAALK----LNKTCEEKAALEIAKRSRS 218 (338)
T ss_dssp CCCCCCCCEEEEEESCGG-----GSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHH----TTCEECHHHHHHHHHTTTT
T ss_pred eecCCCCeEEEEeCCCcc-----ccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHHHCc
Confidence 78999999876 58999999995 8999999999999999987764 4567889999888886655
Q ss_pred ccccCCChhhHHHHHHHHhhHH
Q 003094 398 YISDRFLPDKAIDLIDEAGSRV 419 (848)
Q Consensus 398 ~~~~~~~p~~a~~ll~~a~~~~ 419 (848)
. ++.+..+++.+...+
T Consensus 219 ~------~r~l~~~l~~~~~~a 234 (338)
T 3pfi_A 219 T------PRIALRLLKRVRDFA 234 (338)
T ss_dssp C------HHHHHHHHHHHHHHH
T ss_pred C------HHHHHHHHHHHHHHH
Confidence 4 445666666554433
No 57
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.73 E-value=1e-16 Score=181.68 Aligned_cols=211 Identities=18% Similarity=0.232 Sum_probs=154.5
Q ss_pred hhccccChHHHHHHHHHHHHHHHcc--C-CCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccc
Q 003094 529 LHKRVIGQDEAVKAISRAIRRARVG--L-KNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHT 605 (848)
Q Consensus 529 l~~~vigq~~~~~~l~~~~~~~~~~--~-~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~ 605 (848)
-+++|+|++.+++.|...+...... + .....|..++||+||||||||++|+++|+.+ .+.+|+.++++++...
T Consensus 132 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~--~~~~~~~v~~~~l~~~-- 207 (444)
T 2zan_A 132 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA--NNSTFFSISSSDLVSK-- 207 (444)
T ss_dssp CGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC--CSSEEEEECCC-------
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc--CCCCEEEEeHHHHHhh--
Confidence 3678999999999999887543210 0 0012344579999999999999999999986 3568999998876432
Q ss_pred hhcccCCCCCCcccccc--cchhHHHHcCCCeEEEEcCCCcCC-----------hHHHHHHHhhhcCcEEEcCCCceeec
Q 003094 606 VSKLIGSPPGYVGYTEG--GQLTEAVRRRPYTVVLFDEIEKAH-----------PDVFNMMLQILEDGRLTDSKGRTVDF 672 (848)
Q Consensus 606 ~~~l~g~~~g~~g~~~~--~~l~~~~~~~~~~Vl~lDEid~l~-----------~~~~~~Ll~~le~g~~~~~~g~~v~~ 672 (848)
|+|..+. ..++..++...++||||||||.+. ..+++.|+..|++.. ...
T Consensus 208 ----------~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~--------~~~ 269 (444)
T 2zan_A 208 ----------WLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVG--------VDN 269 (444)
T ss_dssp --------------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSS--------CCC
T ss_pred ----------hcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcc--------cCC
Confidence 3443332 456666777788999999999883 358888999887632 123
Q ss_pred CCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHHHH
Q 003094 673 KNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIM 752 (848)
Q Consensus 673 ~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~~~ 752 (848)
.+++||+|||... .++++|++||+..+.+++++.++...|+...
T Consensus 270 ~~v~vI~atn~~~------------------------------------~ld~al~rRf~~~i~i~~P~~~~r~~il~~~ 313 (444)
T 2zan_A 270 DGILVLGATNIPW------------------------------------VLDSAIRRRFEKRIYIPLPEAHARAAMFRLH 313 (444)
T ss_dssp SSCEEEEEESCGG------------------------------------GSCHHHHTTCCEEEECCCCCHHHHHHHHHHH
T ss_pred CCEEEEecCCCcc------------------------------------ccCHHHHhhcceEEEeCCcCHHHHHHHHHHH
Confidence 5789999998443 2678999999999999999999999999776
Q ss_pred HHHHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 003094 753 LKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSMAEKML 808 (848)
Q Consensus 753 l~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~l~~~l~~~~l 808 (848)
+.. ....+++..++.|+. ....+..++|+..+...+..++-+.+-
T Consensus 314 l~~---------~~~~l~~~~l~~la~--~t~G~sgadl~~l~~~a~~~a~r~~~~ 358 (444)
T 2zan_A 314 LGS---------TQNSLTEADFQELGR--KTDGYSGADISIIVRDALMQPVRKVQS 358 (444)
T ss_dssp HTT---------SCEECCHHHHHHHHH--HTTTCCHHHHHHHHHHHHTHHHHHHHH
T ss_pred Hhc---------CCCCCCHHHHHHHHH--HcCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 643 344578889999998 455677899999999999888877643
No 58
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.73 E-value=1.7e-16 Score=172.79 Aligned_cols=197 Identities=14% Similarity=0.181 Sum_probs=154.1
Q ss_pred hhhhhhhhhhcCCCCCccCChHHHHHHHHHhccCCCCCc-EEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeC
Q 003094 183 YGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNP-CLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDM 261 (848)
Q Consensus 183 ~~~~l~~~~~~~~ld~iiG~~~~~~~l~~~l~~~~~~~i-LL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~ 261 (848)
-...|.++++|.+|++++|+++.++.+...+.....+++ |++||||||||++++++++.+ +.+++++++
T Consensus 12 ~~~~~~~k~rP~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l----------~~~~~~i~~ 81 (324)
T 3u61_B 12 KEHILEQKYRPSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV----------NADMMFVNG 81 (324)
T ss_dssp TCSSHHHHSCCCSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT----------TEEEEEEET
T ss_pred ccchHHHhhCCCCHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh----------CCCEEEEcc
Confidence 345799999999999999999999999999987776666 556779999999999999998 577888987
Q ss_pred CcccccccccchHHHHHHHHHHHHHh-----CCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcC--CceEEEEeeCh
Q 003094 262 GLLVAGTKYRGEFEERLKKLMEEIKQ-----SDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR--GELQCIGATTL 334 (848)
Q Consensus 262 ~~l~~~~~~~g~~~~~l~~l~~~~~~-----~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~atn~ 334 (848)
+... ...+...+..... +.+.||||||+|.+.+ .+.++.|..+++. ..+.+|++||.
T Consensus 82 ~~~~---------~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~-------~~~~~~L~~~le~~~~~~~iI~~~n~ 145 (324)
T 3u61_B 82 SDCK---------IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL-------AESQRHLRSFMEAYSSNCSIIITANN 145 (324)
T ss_dssp TTCC---------HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG-------HHHHHHHHHHHHHHGGGCEEEEEESS
T ss_pred cccC---------HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc-------HHHHHHHHHHHHhCCCCcEEEEEeCC
Confidence 5432 2234443443322 2578999999999951 3467788887773 57889999998
Q ss_pred HHHHhhhhcChhhhcccCCCcCCCCCHHHHHHHHHHHHHHHh---hhhcCCCCh-HHHHHHHhhhhcccccCCChhhHHH
Q 003094 335 DEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYE---IHHKLRYTD-EALVSAAQLSYQYISDRFLPDKAID 410 (848)
Q Consensus 335 ~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~Il~~~~~~~~---~~~~~~~s~-~~l~~l~~~s~~~~~~~~~p~~a~~ 410 (848)
.. .+++++.+||..+.|++|+.+++.+|++.+...+. ...++.+++ +++..++..+.+.+. .++.
T Consensus 146 ~~-----~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R------~a~~ 214 (324)
T 3u61_B 146 ID-----GIIKPLQSRCRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFR------KTIG 214 (324)
T ss_dssp GG-----GSCTTHHHHSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTT------HHHH
T ss_pred cc-----ccCHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHH------HHHH
Confidence 76 68999999999999999999998888776554432 456788888 999999988776544 4888
Q ss_pred HHHHHh
Q 003094 411 LIDEAG 416 (848)
Q Consensus 411 ll~~a~ 416 (848)
.|+.++
T Consensus 215 ~L~~~~ 220 (324)
T 3u61_B 215 ELDSYS 220 (324)
T ss_dssp HHHHHG
T ss_pred HHHHHh
Confidence 888776
No 59
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.72 E-value=5.7e-17 Score=171.71 Aligned_cols=200 Identities=25% Similarity=0.310 Sum_probs=141.7
Q ss_pred CCCCCccCChHHHHHHHHHh-------------ccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEe
Q 003094 194 GKLDPVVGRQPQIERVVQIL-------------GRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLD 260 (848)
Q Consensus 194 ~~ld~iiG~~~~~~~l~~~l-------------~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~ 260 (848)
.+++++.|.++.++.|.+.+ .-..+.+++|+||||||||++++++|..+ +..++.++
T Consensus 7 ~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~----------~~~~i~i~ 76 (274)
T 2x8a_A 7 VTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANES----------GLNFISVK 76 (274)
T ss_dssp -----CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHT----------TCEEEEEE
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHc----------CCCEEEEE
Confidence 46889999999888876643 22456679999999999999999999987 34678888
Q ss_pred CCcccccccccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCC---chHHHHHHHhhhhc----CCceEEEEeeC
Q 003094 261 MGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAE---GAIDAANILKPSLA----RGELQCIGATT 333 (848)
Q Consensus 261 ~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~---~~~~~~~~L~~~l~----~~~v~vI~atn 333 (848)
...+. ..+.++.+..+..+|..+....|+++|+||+|.+...+... ......+.+...+. +..++++++||
T Consensus 77 g~~l~--~~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn 154 (274)
T 2x8a_A 77 GPELL--NMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATN 154 (274)
T ss_dssp TTTTC--SSTTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEES
T ss_pred cHHHH--hhhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecC
Confidence 87776 45678888999999999888889999999999986542211 11123444444443 34588899999
Q ss_pred hHHHHhhhhcChhhhc--ccC-CCcCCCCCHHHHHHHHHHHHHHHhhhhcCCC-ChHHHHHHHhhh--hcccccCCChhh
Q 003094 334 LDEYRKHIEKDPALER--RFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRY-TDEALVSAAQLS--YQYISDRFLPDK 407 (848)
Q Consensus 334 ~~~~~~~~~~d~al~~--Rf~-~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~-s~~~l~~l~~~s--~~~~~~~~~p~~ 407 (848)
.++ .+|+++.| ||+ .|.|+.|+.++|.+||+.+.+.. ..... .+..+..++..+ .+|.+ .+
T Consensus 155 ~p~-----~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~---~~~~~~~~~~~~~la~~~~~~g~sg-----ad 221 (274)
T 2x8a_A 155 RPD-----IIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNG---TKPPLDADVNLEAIAGDLRCDCYTG-----AD 221 (274)
T ss_dssp CGG-----GSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTT---BTTBBCTTCCHHHHHTCSGGGSCCH-----HH
T ss_pred Chh-----hCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcc---cCCCCccccCHHHHHHhhccCCcCH-----HH
Confidence 998 58999999 998 89999999999999999876431 11222 233466666653 36544 46
Q ss_pred HHHHHHHHhhH
Q 003094 408 AIDLIDEAGSR 418 (848)
Q Consensus 408 a~~ll~~a~~~ 418 (848)
...++.+|+..
T Consensus 222 l~~l~~~a~~~ 232 (274)
T 2x8a_A 222 LSALVREASIC 232 (274)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777777643
No 60
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.71 E-value=1.2e-16 Score=171.90 Aligned_cols=206 Identities=20% Similarity=0.321 Sum_probs=146.9
Q ss_pred hccccChHHHHHHHHHHHHHH--------HccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccc
Q 003094 530 HKRVIGQDEAVKAISRAIRRA--------RVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFM 601 (848)
Q Consensus 530 ~~~vigq~~~~~~l~~~~~~~--------~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~ 601 (848)
+++++|++.+++.|.+.+... ..++.. ..++||+||||||||++|+++|..+ +.+++.++++++.
T Consensus 14 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~----~~~vLL~Gp~GtGKT~la~ala~~~---~~~~i~v~~~~l~ 86 (301)
T 3cf0_A 14 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTP----SKGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPELL 86 (301)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCC----CSEEEEECSSSSSHHHHHHHHHHHT---TCEEEEECHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCC----CceEEEECCCCcCHHHHHHHHHHHh---CCCEEEEEhHHHH
Confidence 567999999999999888753 123222 2459999999999999999999987 6889999988764
Q ss_pred cccchhcccCCCCCCcccccccchhHHHHcCCCeEEEEcCCCcCCh--------------HHHHHHHhhhcCcEEEcCCC
Q 003094 602 ERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHP--------------DVFNMMLQILEDGRLTDSKG 667 (848)
Q Consensus 602 ~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~--------------~~~~~Ll~~le~g~~~~~~g 667 (848)
.. ++|... .....++..++...++||||||+|.+.+ .+++.|+..|+.-.
T Consensus 87 ~~-----~~g~~~-----~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~------ 150 (301)
T 3cf0_A 87 TM-----WFGESE-----ANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS------ 150 (301)
T ss_dssp HH-----HHTTCT-----THHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSC------
T ss_pred hh-----hcCchH-----HHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhccc------
Confidence 32 233211 0113456666667789999999997643 36789999998521
Q ss_pred ceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhh--ccCeEEEcCCCCHHHH
Q 003094 668 RTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLN--RLDEMIVFRQLTKLEV 745 (848)
Q Consensus 668 ~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~--R~d~~i~f~~l~~~el 745 (848)
...+++||+|||.... +++++++ ||+..+.|++++.++.
T Consensus 151 ---~~~~v~vi~atn~~~~------------------------------------ld~al~r~gRf~~~i~i~~p~~~~r 191 (301)
T 3cf0_A 151 ---TKKNVFIIGATNRPDI------------------------------------IDPAILRPGRLDQLIYIPLPDEKSR 191 (301)
T ss_dssp ---TTSSEEEEEEESCGGG------------------------------------SCGGGGSTTSSCEEEECCCCCHHHH
T ss_pred ---CCCCEEEEEecCCccc------------------------------------cChHHhcCCccceEEecCCcCHHHH
Confidence 1257899999984432 5677876 9999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHHHHHHHHHHHHHHc
Q 003094 746 KEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSMAEKMLA 809 (848)
Q Consensus 746 ~~I~~~~l~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~l~~~l~~~~l~ 809 (848)
.+|+..++... +....++ ++.++...+. +..++|++++++++..++.+.+-.
T Consensus 192 ~~il~~~l~~~-------~~~~~~~---~~~la~~~~g--~sg~dl~~l~~~a~~~a~~~~~~~ 243 (301)
T 3cf0_A 192 VAILKANLRKS-------PVAKDVD---LEFLAKMTNG--FSGADLTEICQRACKLAIRESIES 243 (301)
T ss_dssp HHHHHHHHTTS-------CBCSSCC---HHHHHHTCSS--CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccC-------CCCccch---HHHHHHHcCC--CCHHHHHHHHHHHHHHHHHHHHHh
Confidence 99987766431 2211233 3455554333 345699999999999888777543
No 61
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.70 E-value=2.6e-16 Score=171.30 Aligned_cols=196 Identities=16% Similarity=0.207 Sum_probs=146.4
Q ss_pred hhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhc
Q 003094 529 LHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSK 608 (848)
Q Consensus 529 l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~ 608 (848)
-+++++|++.++..+...+....... .+..++||+||||||||++|+++|+.+ +.+++.++|+.+...
T Consensus 10 ~~~~~ig~~~~~~~l~~~l~~~~~~~----~~~~~vll~G~~GtGKT~la~~i~~~~---~~~~~~~~~~~~~~~----- 77 (324)
T 1hqc_A 10 TLDEYIGQERLKQKLRVYLEAAKARK----EPLEHLLLFGPPGLGKTTLAHVIAHEL---GVNLRVTSGPAIEKP----- 77 (324)
T ss_dssp STTTCCSCHHHHHHHHHHHHHHHHHC----SCCCCCEEECCTTCCCHHHHHHHHHHH---TCCEEEECTTTCCSH-----
T ss_pred cHHHhhCHHHHHHHHHHHHHHHHccC----CCCCcEEEECCCCCCHHHHHHHHHHHh---CCCEEEEeccccCCh-----
Confidence 35679999999999998887654321 122358999999999999999999988 577888887765321
Q ss_pred ccCCCCCCcccccccchhHHHHc--CCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCc-------eeecCCeEEEE
Q 003094 609 LIGSPPGYVGYTEGGQLTEAVRR--RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGR-------TVDFKNTLLIM 679 (848)
Q Consensus 609 l~g~~~g~~g~~~~~~l~~~~~~--~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~-------~v~~~~~iiI~ 679 (848)
+.+.+.+.. +.+++|||||++.+++..++.|+++++++.+....+. .....++++|+
T Consensus 78 --------------~~l~~~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~ 143 (324)
T 1hqc_A 78 --------------GDLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIG 143 (324)
T ss_dssp --------------HHHHHHHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEE
T ss_pred --------------HHHHHHHHHhccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEE
Confidence 223344443 5678999999999999999999999998876543221 22345789999
Q ss_pred ecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHHHHHHHHHHH
Q 003094 680 TSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDR 759 (848)
Q Consensus 680 tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~~~l~~~~~~ 759 (848)
+||... .|+++|++||+.++.|++++.+++..++...+..
T Consensus 144 ~t~~~~------------------------------------~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~---- 183 (324)
T 1hqc_A 144 ATTRPG------------------------------------LITAPLLSRFGIVEHLEYYTPEELAQGVMRDARL---- 183 (324)
T ss_dssp EESCCS------------------------------------SCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHT----
T ss_pred eCCCcc------------------------------------cCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHh----
Confidence 998432 2668899999889999999999998887766543
Q ss_pred HhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHHHH
Q 003094 760 LKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRL 798 (848)
Q Consensus 760 ~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~ 798 (848)
.+ +.+++++++.|... . .++.|.+.+.++.+
T Consensus 184 ---~~--~~~~~~~~~~l~~~--~-~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 184 ---LG--VRITEEAALEIGRR--S-RGTMRVAKRLFRRV 214 (324)
T ss_dssp ---TT--CCCCHHHHHHHHHH--S-CSCHHHHHHHHHHH
T ss_pred ---cC--CCCCHHHHHHHHHH--c-cCCHHHHHHHHHHH
Confidence 12 45899999999985 2 45667777766654
No 62
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.70 E-value=1.3e-16 Score=178.14 Aligned_cols=203 Identities=16% Similarity=0.205 Sum_probs=143.5
Q ss_pred hhccccChHHHHHHHHHHHHHHHccCC---CCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccc
Q 003094 529 LHKRVIGQDEAVKAISRAIRRARVGLK---NPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHT 605 (848)
Q Consensus 529 l~~~vigq~~~~~~l~~~~~~~~~~~~---~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~ 605 (848)
-+++++|++.+++.|...+......-. ....+..++||+||||||||++|+++|+.+ +.+|+.++|+.+...
T Consensus 113 ~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~---~~~~~~v~~~~l~~~-- 187 (389)
T 3vfd_A 113 KFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES---NATFFNISAASLTSK-- 187 (389)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT---TCEEEEECSCCC-----
T ss_pred ChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh---cCcEEEeeHHHhhcc--
Confidence 367899999999999998865532100 011233579999999999999999999987 789999999887542
Q ss_pred hhcccCCCCCCcccccc--cchhHHHHcCCCeEEEEcCCCcC-----------ChHHHHHHHhhhcCcEEEcCCCceeec
Q 003094 606 VSKLIGSPPGYVGYTEG--GQLTEAVRRRPYTVVLFDEIEKA-----------HPDVFNMMLQILEDGRLTDSKGRTVDF 672 (848)
Q Consensus 606 ~~~l~g~~~g~~g~~~~--~~l~~~~~~~~~~Vl~lDEid~l-----------~~~~~~~Ll~~le~g~~~~~~g~~v~~ 672 (848)
|.|..+. ..++..++...++||||||||.+ ...+++.|+..|+..... ..
T Consensus 188 ----------~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~-------~~ 250 (389)
T 3vfd_A 188 ----------YVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSA-------GD 250 (389)
T ss_dssp --------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----------
T ss_pred ----------ccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhccccc-------CC
Confidence 3333322 34566666777899999999988 456888888888753211 12
Q ss_pred CCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHHHH
Q 003094 673 KNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIM 752 (848)
Q Consensus 673 ~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~~~ 752 (848)
.+++||+|||... .+++++++||+..+.|++++.++..+|+..+
T Consensus 251 ~~v~vI~atn~~~------------------------------------~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~ 294 (389)
T 3vfd_A 251 DRVLVMGATNRPQ------------------------------------ELDEAVLRRFIKRVYVSLPNEETRLLLLKNL 294 (389)
T ss_dssp -CEEEEEEESCGG------------------------------------GCCHHHHTTCCEEEECCCCCHHHHHHHHHHH
T ss_pred CCEEEEEecCCch------------------------------------hcCHHHHcCcceEEEcCCcCHHHHHHHHHHH
Confidence 4789999998432 2568999999889999999999999999776
Q ss_pred HHHHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHHHHHH
Q 003094 753 LKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLE 800 (848)
Q Consensus 753 l~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~l~ 800 (848)
+.. ....++++.+..|+. ....+..++++..+.....
T Consensus 295 ~~~---------~~~~l~~~~~~~la~--~~~g~~~~~l~~L~~~a~~ 331 (389)
T 3vfd_A 295 LCK---------QGSPLTQKELAQLAR--MTDGYSGSDLTALAKDAAL 331 (389)
T ss_dssp HTT---------SCCCSCHHHHHHHHH--HTTTCCHHHHHHHHHHHTT
T ss_pred HHh---------cCCCCCHHHHHHHHH--HcCCCCHHHHHHHHHHHHH
Confidence 643 234578889999988 3444555666655554433
No 63
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.69 E-value=3e-16 Score=173.06 Aligned_cols=205 Identities=16% Similarity=0.211 Sum_probs=147.7
Q ss_pred hccccChHHHHHHHHHHHHHHHccCC---CCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccch
Q 003094 530 HKRVIGQDEAVKAISRAIRRARVGLK---NPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTV 606 (848)
Q Consensus 530 ~~~vigq~~~~~~l~~~~~~~~~~~~---~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~ 606 (848)
+++++|++.+++.|.+.+......-. ....+..++||+||||||||++|+++|+.+ +.+++.++++.+...
T Consensus 83 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~---~~~~~~i~~~~l~~~--- 156 (357)
T 3d8b_A 83 WEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS---GATFFSISASSLTSK--- 156 (357)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT---TCEEEEEEGGGGCCS---
T ss_pred HHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc---CCeEEEEehHHhhcc---
Confidence 56799999999999998875321100 011233469999999999999999999987 788999999876432
Q ss_pred hcccCCCCCCcccccc--cchhHHHHcCCCeEEEEcCCCcCCh-----------HHHHHHHhhhcCcEEEcCCCceeecC
Q 003094 607 SKLIGSPPGYVGYTEG--GQLTEAVRRRPYTVVLFDEIEKAHP-----------DVFNMMLQILEDGRLTDSKGRTVDFK 673 (848)
Q Consensus 607 ~~l~g~~~g~~g~~~~--~~l~~~~~~~~~~Vl~lDEid~l~~-----------~~~~~Ll~~le~g~~~~~~g~~v~~~ 673 (848)
|.|..+. ..++..++...++||||||||.+.+ .+++.|+..+++.... ...
T Consensus 157 ---------~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~-------~~~ 220 (357)
T 3d8b_A 157 ---------WVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTS-------SED 220 (357)
T ss_dssp ---------STTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC-----------CCC
T ss_pred ---------ccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhccccc-------CCC
Confidence 3333221 3455666667789999999998733 5788888888864311 124
Q ss_pred CeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHHHHH
Q 003094 674 NTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIML 753 (848)
Q Consensus 674 ~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~~~l 753 (848)
+++||++||... .+++++++||+..+.+++++.++..+|+...+
T Consensus 221 ~v~vI~atn~~~------------------------------------~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~ 264 (357)
T 3d8b_A 221 RILVVGATNRPQ------------------------------------EIDEAARRRLVKRLYIPLPEASARKQIVINLM 264 (357)
T ss_dssp CEEEEEEESCGG------------------------------------GBCHHHHTTCCEEEECCCCCHHHHHHHHHHHH
T ss_pred CEEEEEecCChh------------------------------------hCCHHHHhhCceEEEeCCcCHHHHHHHHHHHH
Confidence 778999998433 25688999998899999999999999997766
Q ss_pred HHHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHHHHHHHHH
Q 003094 754 KEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSM 803 (848)
Q Consensus 754 ~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~l~~~l 803 (848)
.. ..+.++++.++.|+.. ...+..++++..+.......+
T Consensus 265 ~~---------~~~~l~~~~l~~la~~--t~G~s~~dl~~l~~~a~~~~i 303 (357)
T 3d8b_A 265 SK---------EQCCLSEEEIEQIVQQ--SDAFSGADMTQLCREASLGPI 303 (357)
T ss_dssp HT---------SCBCCCHHHHHHHHHH--TTTCCHHHHHHHHHHHHTHHH
T ss_pred hh---------cCCCccHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHHH
Confidence 43 2345788999999984 344566778777776655444
No 64
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.69 E-value=3.6e-18 Score=180.89 Aligned_cols=199 Identities=26% Similarity=0.382 Sum_probs=135.4
Q ss_pred cCCCCCccCChHHHHHHHHHhc------------cCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEe
Q 003094 193 EGKLDPVVGRQPQIERVVQILG------------RRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLD 260 (848)
Q Consensus 193 ~~~ld~iiG~~~~~~~l~~~l~------------~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~ 260 (848)
+..+++++|+++.++.+.+.+. ...+.++||+||||||||++|+++++.+. .+++.++
T Consensus 7 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~----------~~~~~v~ 76 (268)
T 2r62_A 7 NVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAH----------VPFFSMG 76 (268)
T ss_dssp CCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHT----------CCCCCCC
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhC----------CCEEEec
Confidence 4578999999998888777654 24567899999999999999999999883 4456666
Q ss_pred CCcccccccccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCCc-------hHHHHHHHhhhhc-----CCceEE
Q 003094 261 MGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEG-------AIDAANILKPSLA-----RGELQC 328 (848)
Q Consensus 261 ~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~~-------~~~~~~~L~~~l~-----~~~v~v 328 (848)
++.+.. .+.|.....+..++..+....++||||||+|.+.......+ ....++.|...++ ...+++
T Consensus 77 ~~~~~~--~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~v 154 (268)
T 2r62_A 77 GSSFIE--MFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIV 154 (268)
T ss_dssp SCTTTT--SCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEE
T ss_pred hHHHHH--hhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEE
Confidence 666542 23344344456677777777789999999999975432111 1122333444443 234899
Q ss_pred EEeeChHHHHhhhhcChhhhc--ccC-CCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCCh
Q 003094 329 IGATTLDEYRKHIEKDPALER--RFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLP 405 (848)
Q Consensus 329 I~atn~~~~~~~~~~d~al~~--Rf~-~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~p 405 (848)
|++||.++ .+++++.+ ||. .+.|+.|+.+++.++|+.++..+... ++..+..++..+.+|.+
T Consensus 155 i~ttn~~~-----~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~-----~~~~~~~la~~~~g~~g----- 219 (268)
T 2r62_A 155 LAATNRPE-----ILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLA-----NDVNLQEVAKLTAGLAG----- 219 (268)
T ss_dssp EECBSCCT-----TSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCC-----SSCCTTTTTSSSCSSCH-----
T ss_pred EEecCCch-----hcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCC-----CccCHHHHHHHcCCCCH-----
Confidence 99999886 58999999 896 89999999999999998766532111 22224445555555433
Q ss_pred hhHHHHHHHHhhH
Q 003094 406 DKAIDLIDEAGSR 418 (848)
Q Consensus 406 ~~a~~ll~~a~~~ 418 (848)
++...+++.|...
T Consensus 220 ~dl~~l~~~a~~~ 232 (268)
T 2r62_A 220 ADLANIINEAALL 232 (268)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 3566666666543
No 65
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.69 E-value=6.2e-16 Score=157.94 Aligned_cols=195 Identities=20% Similarity=0.239 Sum_probs=146.3
Q ss_pred hhhhhhhcCCCCCccCChHHHHHHHHHhccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCccc
Q 003094 186 NLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLV 265 (848)
Q Consensus 186 ~l~~~~~~~~ld~iiG~~~~~~~l~~~l~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~ 265 (848)
+|.++++|..+++++|+++.++.+.+.+......+++|+||||+|||++++.+++.+.... ....++.++++...
T Consensus 6 ~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~-----~~~~~~~~~~~~~~ 80 (226)
T 2chg_A 6 IWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGEN-----WRDNFIEMNASDER 80 (226)
T ss_dssp CHHHHTSCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGG-----GGGGEEEEETTCTT
T ss_pred hHHHhcCCCCHHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccc-----cccceEEecccccc
Confidence 5778889999999999999999999999888777899999999999999999999874321 12346677765432
Q ss_pred ccccccchHHHHHHHHHHHHH------hCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhc--CCceEEEEeeChHHH
Q 003094 266 AGTKYRGEFEERLKKLMEEIK------QSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLA--RGELQCIGATTLDEY 337 (848)
Q Consensus 266 ~~~~~~g~~~~~l~~l~~~~~------~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~--~~~v~vI~atn~~~~ 337 (848)
. . ..+...+.... ...+.+|||||+|.+.+ +..+.|..+++ ...+.+|++|+...
T Consensus 81 ~----~----~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~--------~~~~~l~~~l~~~~~~~~~i~~~~~~~- 143 (226)
T 2chg_A 81 G----I----DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA--------DAQAALRRTMEMYSKSCRFILSCNYVS- 143 (226)
T ss_dssp C----H----HHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCH--------HHHHHHHHHHHHTTTTEEEEEEESCGG-
T ss_pred C----h----HHHHHHHHHHhcccCCCccCceEEEEeChhhcCH--------HHHHHHHHHHHhcCCCCeEEEEeCChh-
Confidence 1 1 11222222222 24678999999999843 34566666665 35688888888775
Q ss_pred HhhhhcChhhhcccCCCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCChhhHHHHHHHHh
Q 003094 338 RKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAG 416 (848)
Q Consensus 338 ~~~~~~d~al~~Rf~~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~p~~a~~ll~~a~ 416 (848)
.+++++.+||..+.+++|+.++..+++...+.+ .+..++++++..++..+.+. +..++.++..++
T Consensus 144 ----~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~l~~~~~g~------~r~l~~~l~~~~ 208 (226)
T 2chg_A 144 ----RIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEK----EGVKITEDGLEALIYISGGD------FRKAINALQGAA 208 (226)
T ss_dssp ----GSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHH----HTCCBCHHHHHHHHHHHTTC------HHHHHHHHHHHH
T ss_pred ----hcCHHHHHhCceeecCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC------HHHHHHHHHHHH
Confidence 579999999999999999999999999887763 45678899999888877553 455666666654
No 66
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.68 E-value=4.5e-16 Score=167.28 Aligned_cols=205 Identities=16% Similarity=0.230 Sum_probs=143.8
Q ss_pred hccccChHHHHHHHHHHHHHHHcc---CCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccch
Q 003094 530 HKRVIGQDEAVKAISRAIRRARVG---LKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTV 606 (848)
Q Consensus 530 ~~~vigq~~~~~~l~~~~~~~~~~---~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~ 606 (848)
+++++|++.+++.+.+.+...... ......+..++||+||||||||++|+++|+.+ +.+++.++|+.+...
T Consensus 20 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~--- 93 (297)
T 3b9p_A 20 WTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC---SATFLNISAASLTSK--- 93 (297)
T ss_dssp GGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT---TCEEEEEESTTTSSS---
T ss_pred HHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh---CCCeEEeeHHHHhhc---
Confidence 567999999999999888664320 00001233469999999999999999999987 678999998776432
Q ss_pred hcccCCCCCCccccc--ccchhHHHHcCCCeEEEEcCCCcCC-----------hHHHHHHHhhhcCcEEEcCCCceeecC
Q 003094 607 SKLIGSPPGYVGYTE--GGQLTEAVRRRPYTVVLFDEIEKAH-----------PDVFNMMLQILEDGRLTDSKGRTVDFK 673 (848)
Q Consensus 607 ~~l~g~~~g~~g~~~--~~~l~~~~~~~~~~Vl~lDEid~l~-----------~~~~~~Ll~~le~g~~~~~~g~~v~~~ 673 (848)
+.|..+ ...++..+....++||||||+|.+. ..+++.|+..++...... ...
T Consensus 94 ---------~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~------~~~ 158 (297)
T 3b9p_A 94 ---------YVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNP------DGD 158 (297)
T ss_dssp ---------SCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------------
T ss_pred ---------ccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccC------CCC
Confidence 333221 1345556667788999999999873 457778888887532110 113
Q ss_pred CeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHHHHH
Q 003094 674 NTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIML 753 (848)
Q Consensus 674 ~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~~~l 753 (848)
+++||++||... .+++++++||+..+.|++++.++...|+...+
T Consensus 159 ~v~vi~~tn~~~------------------------------------~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~ 202 (297)
T 3b9p_A 159 RIVVLAATNRPQ------------------------------------ELDEAALRRFTKRVYVSLPDEQTRELLLNRLL 202 (297)
T ss_dssp CEEEEEEESCGG------------------------------------GBCHHHHHHCCEEEECCCCCHHHHHHHHHHHH
T ss_pred cEEEEeecCChh------------------------------------hCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHH
Confidence 578999998433 25688999999999999999999998887666
Q ss_pred HHHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHHHHHHHH
Q 003094 754 KEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDS 802 (848)
Q Consensus 754 ~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~l~~~ 802 (848)
.. ....+++++++.|+. ..+.+..++|+..++.....+
T Consensus 203 ~~---------~~~~~~~~~~~~la~--~~~g~~~~~l~~l~~~a~~~a 240 (297)
T 3b9p_A 203 QK---------QGSPLDTEALRRLAK--ITDGYSGSDLTALAKDAALEP 240 (297)
T ss_dssp GG---------GSCCSCHHHHHHHHH--HTTTCCHHHHHHHHHHHTTHH
T ss_pred Hh---------cCCCCCHHHHHHHHH--HcCCCCHHHHHHHHHHHHHHH
Confidence 43 123478889999988 445555667776666554433
No 67
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.68 E-value=1.2e-15 Score=160.58 Aligned_cols=201 Identities=21% Similarity=0.294 Sum_probs=131.4
Q ss_pred hccccChHHHHHHHHHHHHHHHccCC---CCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccch
Q 003094 530 HKRVIGQDEAVKAISRAIRRARVGLK---NPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTV 606 (848)
Q Consensus 530 ~~~vigq~~~~~~l~~~~~~~~~~~~---~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~ 606 (848)
+++++|++.+++.+.+.+......-. ....+..++||+||||||||++|+++|+.+ +.+++.++++.+...
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~---~~~~~~~~~~~~~~~--- 78 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA---QVPFLAMAGAEFVEV--- 78 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH---TCCEEEEETTTTSSS---
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCEEEechHHHHhh---
Confidence 56899999999999888765432110 001233469999999999999999999998 678999999876431
Q ss_pred hcccCCCCCCccccc--ccchhHHHHcCCCeEEEEcCCCcCC------------hH---HHHHHHhhhcCcEEEcCCCce
Q 003094 607 SKLIGSPPGYVGYTE--GGQLTEAVRRRPYTVVLFDEIEKAH------------PD---VFNMMLQILEDGRLTDSKGRT 669 (848)
Q Consensus 607 ~~l~g~~~g~~g~~~--~~~l~~~~~~~~~~Vl~lDEid~l~------------~~---~~~~Ll~~le~g~~~~~~g~~ 669 (848)
+.|... ...++..+....++||||||+|.+. .. .++.|+..++...
T Consensus 79 ---------~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~-------- 141 (262)
T 2qz4_A 79 ---------IGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMG-------- 141 (262)
T ss_dssp ---------STTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCC--------
T ss_pred ---------ccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcC--------
Confidence 222211 1334555555668999999999983 22 4455555555411
Q ss_pred eecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhh--ccCeEEEcCCCCHHHHHH
Q 003094 670 VDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLN--RLDEMIVFRQLTKLEVKE 747 (848)
Q Consensus 670 v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~--R~d~~i~f~~l~~~el~~ 747 (848)
...++++|+|||.... +++++++ ||+..+.|++++.++..+
T Consensus 142 -~~~~~~vi~~tn~~~~------------------------------------ld~~l~~~~R~~~~i~i~~p~~~~r~~ 184 (262)
T 2qz4_A 142 -TTDHVIVLASTNRADI------------------------------------LDGALMRPGRLDRHVFIDLPTLQERRE 184 (262)
T ss_dssp -TTCCEEEEEEESCGGG------------------------------------GGSGGGSTTSCCEEEECCSCCHHHHHH
T ss_pred -CCCCEEEEecCCChhh------------------------------------cCHHHhcCCcCCeEEEeCCcCHHHHHH
Confidence 1247789999984332 4577877 999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCeEeecHH-HHHHHHHccCCCCCCchHHHHHHHHHHHH
Q 003094 748 IADIMLKEVFDRLKTKDIELQVTER-FRERVVEEGYNPSYGARPLRRAIMRLLED 801 (848)
Q Consensus 748 I~~~~l~~~~~~~~~~~~~l~i~~~-a~~~l~~~~~~~~~g~r~L~~~i~~~l~~ 801 (848)
|+..++... + +..+++ ..+.++.. ...+..++++..++.....
T Consensus 185 il~~~~~~~-------~--~~~~~~~~~~~l~~~--~~g~~~~~l~~l~~~a~~~ 228 (262)
T 2qz4_A 185 IFEQHLKSL-------K--LTQSSTFYSQRLAEL--TPGFSGADIANICNEAALH 228 (262)
T ss_dssp HHHHHHHHT-------T--CCBTHHHHHHHHHHT--CTTCCHHHHHHHHHHHHTC
T ss_pred HHHHHHHhC-------C--CCcchhhHHHHHHHH--CCCCCHHHHHHHHHHHHHH
Confidence 998887652 1 223444 34666663 3334456777776655443
No 68
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.67 E-value=3.7e-16 Score=169.47 Aligned_cols=199 Identities=20% Similarity=0.223 Sum_probs=150.8
Q ss_pred hhhhhhhcCCCCCccCChHHHHHHHHHhccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCccc
Q 003094 186 NLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLV 265 (848)
Q Consensus 186 ~l~~~~~~~~ld~iiG~~~~~~~l~~~l~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~ 265 (848)
+|.++++|..+++++|++..++.+...+.....+++||+||||||||++++.+++.+..... +..++.++++...
T Consensus 6 ~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~-----~~~~~~~~~~~~~ 80 (319)
T 2chq_A 6 IWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENW-----RDNFIEMNASDER 80 (319)
T ss_dssp CTTTTTSCSSGGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTCH-----HHHCEEEETTSTT
T ss_pred cHHHhcCCCCHHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCcc-----cCCeEEEeCcccc
Confidence 68889999999999999999999999998877778999999999999999999999853211 2346777776543
Q ss_pred ccccccchHHHHHHHHHHHH--HhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcC--CceEEEEeeChHHHHhhh
Q 003094 266 AGTKYRGEFEERLKKLMEEI--KQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR--GELQCIGATTLDEYRKHI 341 (848)
Q Consensus 266 ~~~~~~g~~~~~l~~l~~~~--~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~atn~~~~~~~~ 341 (848)
.. ......+....... ..+.+.++||||+|.+.. +..+.|..+++. ..+.+|++||...
T Consensus 81 ~~----~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~--------~~~~~L~~~le~~~~~~~~i~~~~~~~----- 143 (319)
T 2chq_A 81 GI----DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA--------DAQAALRRTMEMYSKSCRFILSCNYVS----- 143 (319)
T ss_dssp CT----TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCH--------HHHHTTGGGTSSSSSSEEEEEEESCGG-----
T ss_pred Ch----HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCH--------HHHHHHHHHHHhcCCCCeEEEEeCChh-----
Confidence 21 11112222221110 124578999999999843 467788888874 5688899888776
Q ss_pred hcChhhhcccCCCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCChhhHHHHHHHHh
Q 003094 342 EKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAG 416 (848)
Q Consensus 342 ~~d~al~~Rf~~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~p~~a~~ll~~a~ 416 (848)
.+.+++.+||..+.|++|+.+++.+++...+. ..++.++++++..++..+.|. ++.+..+++.+.
T Consensus 144 ~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~----~~~~~i~~~~l~~l~~~~~G~------~r~~~~~l~~~~ 208 (319)
T 2chq_A 144 RIIEPIQSRCAVFRFKPVPKEAMKKRLLEICE----KEGVKITEDGLEALIYISGGD------FRKAINALQGAA 208 (319)
T ss_dssp GSCHHHHTTCEEEECCCCCHHHHHHHHHHHHH----TTCCCBCHHHHHHHHHTTTTC------HHHHHHHHHHHH
T ss_pred hcchHHHhhCeEEEecCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHcCCC------HHHHHHHHHHHH
Confidence 68999999999999999999999999887776 356788999999999877654 445666666553
No 69
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.67 E-value=2.1e-15 Score=167.22 Aligned_cols=211 Identities=22% Similarity=0.269 Sum_probs=140.4
Q ss_pred hhhhhhhhcCC-CCCccCChHHHHHH---HHHhccCC--CCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEE
Q 003094 185 TNLTKLAEEGK-LDPVVGRQPQIERV---VQILGRRT--KNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVIT 258 (848)
Q Consensus 185 ~~l~~~~~~~~-ld~iiG~~~~~~~l---~~~l~~~~--~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~ 258 (848)
..+.+.++|.. +++++|++..++.+ ...+.... +.++||+||||||||++|+++++.+.. ..+++.
T Consensus 31 l~l~~~~~p~~~~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~--------~~~~~~ 102 (368)
T 3uk6_A 31 LGLDDALEPRQASQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGP--------DTPFTA 102 (368)
T ss_dssp CCBCTTSCBCSEETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCS--------SCCEEE
T ss_pred cCcccccCcCcchhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcc--------cCCccc
Confidence 44567778877 99999999987764 44444433 358999999999999999999999853 234555
Q ss_pred EeCCccccc-----------------------------------------------ccccchHHHHHHHHHHHHHh----
Q 003094 259 LDMGLLVAG-----------------------------------------------TKYRGEFEERLKKLMEEIKQ---- 287 (848)
Q Consensus 259 ~~~~~l~~~-----------------------------------------------~~~~g~~~~~l~~l~~~~~~---- 287 (848)
+++..+... ..+.|+....++..+..+..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 182 (368)
T 3uk6_A 103 IAGSEIFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWRE 182 (368)
T ss_dssp EEGGGGSCSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhh
Confidence 554331110 01112223344444433321
Q ss_pred -CC----CeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCC--ceEEEEeeChH------HHHhhhhcChhhhcccCCC
Q 003094 288 -SD----EIILFIDEVHTLIGAGAAEGAIDAANILKPSLARG--ELQCIGATTLD------EYRKHIEKDPALERRFQPV 354 (848)
Q Consensus 288 -~~----~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~--~v~vI~atn~~------~~~~~~~~d~al~~Rf~~i 354 (848)
+. |+||||||+|.+. .+..+.|...++.. .++++++.+.. .......+++++.+||..+
T Consensus 183 ~g~~~~~~~vl~IDEi~~l~--------~~~~~~L~~~le~~~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i 254 (368)
T 3uk6_A 183 EGKAEIIPGVLFIDEVHMLD--------IESFSFLNRALESDMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIV 254 (368)
T ss_dssp HTC---CBCEEEEESGGGSB--------HHHHHHHHHHTTCTTCCEEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEE
T ss_pred hccccccCceEEEhhccccC--------hHHHHHHHHHhhCcCCCeeeeecccceeeeeccCCCCcccCCHHHHhhccEE
Confidence 21 5799999999984 44778888887743 34333332100 0000126899999999989
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCChhhHHHHHHHHhhHHH
Q 003094 355 KVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVR 420 (848)
Q Consensus 355 ~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~p~~a~~ll~~a~~~~~ 420 (848)
.|++|+.+++.+|++..+.. .++.++++++..++..+.+ ..++.+..+++.+...+.
T Consensus 255 ~~~~~~~~e~~~il~~~~~~----~~~~~~~~~l~~l~~~~~~-----G~~r~~~~ll~~a~~~A~ 311 (368)
T 3uk6_A 255 STTPYSEKDTKQILRIRCEE----EDVEMSEDAYTVLTRIGLE-----TSLRYAIQLITAASLVCR 311 (368)
T ss_dssp EECCCCHHHHHHHHHHHHHH----TTCCBCHHHHHHHHHHHHH-----SCHHHHHHHHHHHHHHHH
T ss_pred EecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHH
Confidence 99999999999999987763 4678899999999998873 235678888887765543
No 70
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.67 E-value=2.4e-15 Score=163.59 Aligned_cols=184 Identities=23% Similarity=0.236 Sum_probs=138.0
Q ss_pred hhhhcCCCCCccCChHHHHHHHHHhcc-----CCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCc
Q 003094 189 KLAEEGKLDPVVGRQPQIERVVQILGR-----RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGL 263 (848)
Q Consensus 189 ~~~~~~~ld~iiG~~~~~~~l~~~l~~-----~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~ 263 (848)
++++|.++++++|++..++.+...+.. ....+++|+||||||||++|+++++.+ +.+++.+++..
T Consensus 4 ~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~----------~~~~~~~~~~~ 73 (324)
T 1hqc_A 4 LALRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL----------GVNLRVTSGPA 73 (324)
T ss_dssp -CCCCCSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHH----------TCCEEEECTTT
T ss_pred cccCcccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEeccc
Confidence 457888999999999999988877652 456889999999999999999999988 45677787765
Q ss_pred ccccccccchHHHHHHHHHHHHHh--CCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCC-----------------
Q 003094 264 LVAGTKYRGEFEERLKKLMEEIKQ--SDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARG----------------- 324 (848)
Q Consensus 264 l~~~~~~~g~~~~~l~~l~~~~~~--~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~----------------- 324 (848)
+.. ...++..+.. ..+.+|||||+|.+.. ..++.|...++..
T Consensus 74 ~~~-----------~~~l~~~l~~~~~~~~~l~lDEi~~l~~--------~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~ 134 (324)
T 1hqc_A 74 IEK-----------PGDLAAILANSLEEGDILFIDEIHRLSR--------QAEEHLYPAMEDFVMDIVIGQGPAARTIRL 134 (324)
T ss_dssp CCS-----------HHHHHHHHTTTCCTTCEEEETTTTSCCH--------HHHHHHHHHHHHSEEEECCSSSSSCCCEEE
T ss_pred cCC-----------hHHHHHHHHHhccCCCEEEEECCccccc--------chHHHHHHHHHhhhhHHhcccccccccccc
Confidence 531 1122333332 4577999999999843 3556666655532
Q ss_pred ---ceEEEEeeChHHHHhhhhcChhhhcccC-CCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccc
Q 003094 325 ---ELQCIGATTLDEYRKHIEKDPALERRFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYIS 400 (848)
Q Consensus 325 ---~v~vI~atn~~~~~~~~~~d~al~~Rf~-~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~ 400 (848)
.+.+|++||... .+++++.+||. .+.|+.|+.+++.+++.....+ .+..++++++..++..+.++
T Consensus 135 ~~~~~~~i~~t~~~~-----~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~----~~~~~~~~~~~~l~~~~~G~-- 203 (324)
T 1hqc_A 135 ELPRFTLIGATTRPG-----LITAPLLSRFGIVEHLEYYTPEELAQGVMRDARL----LGVRITEEAALEIGRRSRGT-- 203 (324)
T ss_dssp ECCCCEEEEEESCCS-----SCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHT----TTCCCCHHHHHHHHHHSCSC--
T ss_pred CCCCEEEEEeCCCcc-----cCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHHccCC--
Confidence 478999999876 57899999995 8999999999999988877663 45678999999998876554
Q ss_pred cCCChhhHHHHHHHHh
Q 003094 401 DRFLPDKAIDLIDEAG 416 (848)
Q Consensus 401 ~~~~p~~a~~ll~~a~ 416 (848)
|+.+..++..+.
T Consensus 204 ----~r~l~~~l~~~~ 215 (324)
T 1hqc_A 204 ----MRVAKRLFRRVR 215 (324)
T ss_dssp ----HHHHHHHHHHHT
T ss_pred ----HHHHHHHHHHHH
Confidence 445666665554
No 71
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.67 E-value=3e-16 Score=167.85 Aligned_cols=211 Identities=9% Similarity=0.041 Sum_probs=147.6
Q ss_pred ccCChHHHHHHHHHh----ccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCccccc-------
Q 003094 199 VVGRQPQIERVVQIL----GRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAG------- 267 (848)
Q Consensus 199 iiG~~~~~~~l~~~l----~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~------- 267 (848)
+.||+++++++...| ....+++++|+||||||||++++.+++.+........+....++++++..+.+.
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I 101 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKI 101 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHH
Confidence 778999999877654 457888999999999999999999999996432222223467888887654321
Q ss_pred ------c-cccchHHHHHHHHHHHH--HhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhh--hcCCceEEEEeeChHH
Q 003094 268 ------T-KYRGEFEERLKKLMEEI--KQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPS--LARGELQCIGATTLDE 336 (848)
Q Consensus 268 ------~-~~~g~~~~~l~~l~~~~--~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~--l~~~~v~vI~atn~~~ 336 (848)
. ...+.....+..+|..+ ....++|+||||+|.|. . .++...|..+ .+..++.+|+++|..+
T Consensus 102 ~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~-~------q~~L~~l~~~~~~~~s~~~vI~i~n~~d 174 (318)
T 3te6_A 102 WFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL-S------EKILQYFEKWISSKNSKLSIICVGGHNV 174 (318)
T ss_dssp HHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC-C------THHHHHHHHHHHCSSCCEEEEEECCSSC
T ss_pred HHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh-c------chHHHHHHhcccccCCcEEEEEEecCcc
Confidence 0 01233455677777765 34567899999999996 1 1222222222 2466799999998765
Q ss_pred HHhhhhcChhhhcccC--CCcCCCCCHHHHHHHHHHHHHHHhhh-------------------------------hcCCC
Q 003094 337 YRKHIEKDPALERRFQ--PVKVPEPSVDETIQILKGLRERYEIH-------------------------------HKLRY 383 (848)
Q Consensus 337 ~~~~~~~d~al~~Rf~--~i~~~~p~~~e~~~Il~~~~~~~~~~-------------------------------~~~~~ 383 (848)
... ..+++++.+||. .|.|++++.+|..+|++..+...... ....+
T Consensus 175 ~~~-~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 253 (318)
T 3te6_A 175 TIR-EQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVINHKI 253 (318)
T ss_dssp CCH-HHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--------CTTEEEECEEC
T ss_pred cch-hhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccc
Confidence 322 236788899995 69999999999999999988764211 01247
Q ss_pred ChHHHHHHHhhhhcccccCCChhhHHHHHHHHhhHHH
Q 003094 384 TDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVR 420 (848)
Q Consensus 384 s~~~l~~l~~~s~~~~~~~~~p~~a~~ll~~a~~~~~ 420 (848)
++++++.+++......++ .++|+++|+.|...+.
T Consensus 254 ~~~ai~~~A~~vA~~~GD---~R~Al~ilr~A~~~ae 287 (318)
T 3te6_A 254 NNKITQLIAKNVANVSGS---TEKAFKICEAAVEISK 287 (318)
T ss_dssp CHHHHHHHHHHHHHHHCS---HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCCh---HHHHHHHHHHHHHHHH
Confidence 899999999876655555 6689999988875543
No 72
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.66 E-value=2.8e-16 Score=178.57 Aligned_cols=200 Identities=25% Similarity=0.341 Sum_probs=147.0
Q ss_pred hcCCCCCccCChHHHHHHHHHhc---c---------CCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEE
Q 003094 192 EEGKLDPVVGRQPQIERVVQILG---R---------RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITL 259 (848)
Q Consensus 192 ~~~~ld~iiG~~~~~~~l~~~l~---~---------~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~ 259 (848)
.+.+|++++|.++.+..+.++.. . ..+.+++|+||||||||+++++++..+ +.+++.+
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~----------~~~~i~i 95 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA----------RVPFITA 95 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT----------TCCEEEE
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCEEEE
Confidence 35679999999998887666532 1 235679999999999999999999987 3568889
Q ss_pred eCCcccccccccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCC---Cch---HHHHHHHhhhhc----CCceEEE
Q 003094 260 DMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAA---EGA---IDAANILKPSLA----RGELQCI 329 (848)
Q Consensus 260 ~~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~---~~~---~~~~~~L~~~l~----~~~v~vI 329 (848)
+++.+. ..+.+....++..+|+.+....|+|+||||+|.+...... ... ....+.|...++ +..+++|
T Consensus 96 ~g~~~~--~~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~vivi 173 (499)
T 2dhr_A 96 SGSDFV--EMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVM 173 (499)
T ss_dssp EGGGGT--SSCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEE
T ss_pred ehhHHH--HhhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEE
Confidence 988876 3467777888888888877667899999999998754321 111 234444544444 3458899
Q ss_pred EeeChHHHHhhhhcChhhhc--ccC-CCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChH-HHHHHHhhhhcccccCCCh
Q 003094 330 GATTLDEYRKHIEKDPALER--RFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDE-ALVSAAQLSYQYISDRFLP 405 (848)
Q Consensus 330 ~atn~~~~~~~~~~d~al~~--Rf~-~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~-~l~~l~~~s~~~~~~~~~p 405 (848)
++||.++ .+|+++.| ||. .|.|+.|+.++|.+||+.+++ +..++++ .+..++..+.++++
T Consensus 174 Aatn~p~-----~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~------~~~l~~dv~l~~lA~~t~G~~g----- 237 (499)
T 2dhr_A 174 AATNRPD-----ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR------GKPLAEDVDLALLAKRTPGFVG----- 237 (499)
T ss_dssp ECCSCGG-----GSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTS------SSCCCCSSTTHHHHTTSCSCCH-----
T ss_pred EecCChh-----hcCcccccccccceEEecCCCCHHHHHHHHHHHHh------cCCCChHHHHHHHHHhcCCCCH-----
Confidence 9999987 48999999 786 899999999999999986543 2344433 46777877777653
Q ss_pred hhHHHHHHHHhhHH
Q 003094 406 DKAIDLIDEAGSRV 419 (848)
Q Consensus 406 ~~a~~ll~~a~~~~ 419 (848)
++...++.+|...+
T Consensus 238 adL~~lv~~Aa~~A 251 (499)
T 2dhr_A 238 ADLENLLNEAALLA 251 (499)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 35666777665443
No 73
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.66 E-value=5.7e-16 Score=171.82 Aligned_cols=219 Identities=19% Similarity=0.221 Sum_probs=140.6
Q ss_pred hccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchh--
Q 003094 530 HKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVS-- 607 (848)
Q Consensus 530 ~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~-- 607 (848)
++.++|++.+++.+.........+. .+..++||+||||||||++|+++|+.+. ...+++.+++..+.......
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~----~~~~~vLl~GppGtGKT~la~~la~~l~-~~~~~~~~~~~~~~~~~~~~~~ 117 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGK----IAGRAVLIAGQPGTGKTAIAMGMAQALG-PDTPFTAIAGSEIFSLEMSKTE 117 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTC----CTTCEEEEEESTTSSHHHHHHHHHHHHC-SSCCEEEEEGGGGSCSSSCHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCC----CCCCEEEEECCCCCCHHHHHHHHHHHhc-ccCCcccccchhhhhcccchhH
Confidence 6789999999988777666655442 2234699999999999999999999983 44688888876633211000
Q ss_pred -----------------------------------cccCCCCCCcccccccchhH----HHH----cCC----CeEEEEc
Q 003094 608 -----------------------------------KLIGSPPGYVGYTEGGQLTE----AVR----RRP----YTVVLFD 640 (848)
Q Consensus 608 -----------------------------------~l~g~~~g~~g~~~~~~l~~----~~~----~~~----~~Vl~lD 640 (848)
.+.+...++.|... ..+.. +.. ... ++|||||
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~g~~~~~~~vl~ID 196 (368)
T 3uk6_A 118 ALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIK-SEVREQINAKVAEWREEGKAEIIPGVLFID 196 (368)
T ss_dssp HHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------C-HHHHHHHHHHHHHHHHHTC---CBCEEEEE
T ss_pred HHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccH-HHHHHHHHHHHHHhhhhccccccCceEEEh
Confidence 00011111111111 11111 111 111 4699999
Q ss_pred CCCcCChHHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHH
Q 003094 641 EIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELK 720 (848)
Q Consensus 641 Eid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 720 (848)
|+|.++++.++.|++.+++.. .. ++|+++|.+..++.... .+. .
T Consensus 197 Ei~~l~~~~~~~L~~~le~~~-----------~~-~~ii~t~~~~~~i~~t~-----------~~~-------------~ 240 (368)
T 3uk6_A 197 EVHMLDIESFSFLNRALESDM-----------AP-VLIMATNRGITRIRGTS-----------YQS-------------P 240 (368)
T ss_dssp SGGGSBHHHHHHHHHHTTCTT-----------CC-EEEEEESCSEEECBTSS-----------CEE-------------E
T ss_pred hccccChHHHHHHHHHhhCcC-----------CC-eeeeecccceeeeeccC-----------CCC-------------c
Confidence 999999999999999998743 22 45556554433221100 000 0
Q ss_pred hhcChhhhhccCeEEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHHHHHH
Q 003094 721 QYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLE 800 (848)
Q Consensus 721 ~~~~~~ll~R~d~~i~f~~l~~~el~~I~~~~l~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~l~ 800 (848)
..++++|++|| ..+.|+||+.+++.+|+...+.. ..+.++++++++|+.. .+.++.|.+.+.++..+.
T Consensus 241 ~~l~~~l~sR~-~~i~~~~~~~~e~~~il~~~~~~---------~~~~~~~~~l~~l~~~--~~~G~~r~~~~ll~~a~~ 308 (368)
T 3uk6_A 241 HGIPIDLLDRL-LIVSTTPYSEKDTKQILRIRCEE---------EDVEMSEDAYTVLTRI--GLETSLRYAIQLITAASL 308 (368)
T ss_dssp TTCCHHHHTTE-EEEEECCCCHHHHHHHHHHHHHH---------TTCCBCHHHHHHHHHH--HHHSCHHHHHHHHHHHHH
T ss_pred ccCCHHHHhhc-cEEEecCCCHHHHHHHHHHHHHH---------cCCCCCHHHHHHHHHH--hcCCCHHHHHHHHHHHHH
Confidence 13678999999 56899999999999999877654 2245899999999984 333567888777776655
Q ss_pred HH
Q 003094 801 DS 802 (848)
Q Consensus 801 ~~ 802 (848)
.+
T Consensus 309 ~A 310 (368)
T 3uk6_A 309 VC 310 (368)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 74
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.66 E-value=1.9e-16 Score=178.87 Aligned_cols=194 Identities=20% Similarity=0.297 Sum_probs=136.2
Q ss_pred HHHHhhccccChHHHH---HHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccc
Q 003094 525 MEETLHKRVIGQDEAV---KAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFM 601 (848)
Q Consensus 525 l~~~l~~~vigq~~~~---~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~ 601 (848)
+++.-+++++||++++ ..+...+.... ..++||+||||||||++|++||+.+ +.+++.+++....
T Consensus 20 ~rP~~l~~ivGq~~~~~~~~~L~~~i~~~~---------~~~vLL~GppGtGKTtlAr~ia~~~---~~~f~~l~a~~~~ 87 (447)
T 3pvs_A 20 MRPENLAQYIGQQHLLAAGKPLPRAIEAGH---------LHSMILWGPPGTGKTTLAEVIARYA---NADVERISAVTSG 87 (447)
T ss_dssp TCCCSTTTCCSCHHHHSTTSHHHHHHHHTC---------CCEEEEECSTTSSHHHHHHHHHHHT---TCEEEEEETTTCC
T ss_pred hCCCCHHHhCCcHHHHhchHHHHHHHHcCC---------CcEEEEECCCCCcHHHHHHHHHHHh---CCCeEEEEeccCC
Confidence 4444567899999999 77777776532 1369999999999999999999997 6677777754321
Q ss_pred cccchhcccCCCCCCcccccccchhHH----HHcCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecCCeEE
Q 003094 602 ERHTVSKLIGSPPGYVGYTEGGQLTEA----VRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLL 677 (848)
Q Consensus 602 ~~~~~~~l~g~~~g~~g~~~~~~l~~~----~~~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~ii 677 (848)
. .+...+... ...+.++||||||||.++...|+.|++.|+++. ++|
T Consensus 88 ~-----------------~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~~-------------v~l 137 (447)
T 3pvs_A 88 V-----------------KEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT-------------ITF 137 (447)
T ss_dssp H-----------------HHHHHHHHHHHHHHHTTCCEEEEEETTTCC------CCHHHHHTTS-------------CEE
T ss_pred H-----------------HHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcCc-------------eEE
Confidence 1 011111111 123567999999999999999999999999854 456
Q ss_pred EEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHHHHHHHHH
Q 003094 678 IMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVF 757 (848)
Q Consensus 678 I~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~~~l~~~~ 757 (848)
|++|+.... ..++++|++|| .++.|.+++.+++..++...+.+..
T Consensus 138 I~att~n~~----------------------------------~~l~~aL~sR~-~v~~l~~l~~edi~~il~~~l~~~~ 182 (447)
T 3pvs_A 138 IGATTENPS----------------------------------FELNSALLSRA-RVYLLKSLSTEDIEQVLTQAMEDKT 182 (447)
T ss_dssp EEEESSCGG----------------------------------GSSCHHHHTTE-EEEECCCCCHHHHHHHHHHHHHCTT
T ss_pred EecCCCCcc----------------------------------cccCHHHhCce-eEEeeCCcCHHHHHHHHHHHHHHHh
Confidence 666642111 13679999999 6899999999999999988886533
Q ss_pred HHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHHHHHH
Q 003094 758 DRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLE 800 (848)
Q Consensus 758 ~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~l~ 800 (848)
..+. +..+.++++++++|+.. +.+++|.+.+.++.++.
T Consensus 183 ~~~~--~~~~~i~~~al~~L~~~---~~Gd~R~lln~Le~a~~ 220 (447)
T 3pvs_A 183 RGYG--GQDIVLPDETRRAIAEL---VNGDARRALNTLEMMAD 220 (447)
T ss_dssp TSST--TSSEECCHHHHHHHHHH---HCSCHHHHHHHHHHHHH
T ss_pred hhhc--cccCcCCHHHHHHHHHH---CCCCHHHHHHHHHHHHH
Confidence 2221 24577999999999994 56788888888886654
No 75
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.66 E-value=7.3e-16 Score=167.73 Aligned_cols=205 Identities=19% Similarity=0.271 Sum_probs=151.9
Q ss_pred hHHhhhhhhhhhhcCCCCCccCChHHHHHHHHHhccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEE
Q 003094 180 LEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITL 259 (848)
Q Consensus 180 l~~~~~~l~~~~~~~~ld~iiG~~~~~~~l~~~l~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~ 259 (848)
+.....+|.++++|..+++++|+++.++.+...+.....+++||+||||+|||++++.+++.+.... ....++.+
T Consensus 8 ~~~~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~-----~~~~~~~~ 82 (327)
T 1iqp_A 8 VKVLEKPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGEN-----WRHNFLEL 82 (327)
T ss_dssp HHHTTSCHHHHTCCCSTTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGG-----HHHHEEEE
T ss_pred hcccCCchhhccCCCCHHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCc-----ccCceEEe
Confidence 4445568999999999999999999999999999888777899999999999999999999975321 01346667
Q ss_pred eCCcccccccccchHHHHHHHHHHH--HHhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhc--CCceEEEEeeChH
Q 003094 260 DMGLLVAGTKYRGEFEERLKKLMEE--IKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLA--RGELQCIGATTLD 335 (848)
Q Consensus 260 ~~~~l~~~~~~~g~~~~~l~~l~~~--~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~--~~~v~vI~atn~~ 335 (848)
+++.... .......+...... ...+.+.++||||+|.+.+ +.++.|...++ ...+.+|++++..
T Consensus 83 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~--------~~~~~L~~~le~~~~~~~~i~~~~~~ 150 (327)
T 1iqp_A 83 NASDERG----INVIREKVKEFARTKPIGGASFKIIFLDEADALTQ--------DAQQALRRTMEMFSSNVRFILSCNYS 150 (327)
T ss_dssp ETTCHHH----HHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCH--------HHHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred eccccCc----hHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCH--------HHHHHHHHHHHhcCCCCeEEEEeCCc
Confidence 7654321 01111122221110 0114578999999999843 35677777776 3567888888877
Q ss_pred HHHhhhhcChhhhcccCCCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCChhhHHHHHHHH
Q 003094 336 EYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEA 415 (848)
Q Consensus 336 ~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~p~~a~~ll~~a 415 (848)
+ .+.+++.+||..+.|++|+.++..+++...+. ..++.++++++..++..+.+. ++.++.+++.+
T Consensus 151 ~-----~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~----~~~~~~~~~~~~~l~~~~~g~------~r~~~~~l~~~ 215 (327)
T 1iqp_A 151 S-----KIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAE----NEGLELTEEGLQAILYIAEGD------MRRAINILQAA 215 (327)
T ss_dssp G-----GSCHHHHHTEEEEECCCCCHHHHHHHHHHHHH----TTTCEECHHHHHHHHHHHTTC------HHHHHHHHHHH
T ss_pred c-----ccCHHHHhhCcEEEecCCCHHHHHHHHHHHHH----hcCCCCCHHHHHHHHHHCCCC------HHHHHHHHHHH
Confidence 6 58899999999999999999999998887765 356678999999999887653 55677777665
Q ss_pred h
Q 003094 416 G 416 (848)
Q Consensus 416 ~ 416 (848)
.
T Consensus 216 ~ 216 (327)
T 1iqp_A 216 A 216 (327)
T ss_dssp H
T ss_pred H
Confidence 4
No 76
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.66 E-value=2.6e-16 Score=168.55 Aligned_cols=165 Identities=14% Similarity=0.159 Sum_probs=104.1
Q ss_pred hHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhcccCCCCC
Q 003094 536 QDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPG 615 (848)
Q Consensus 536 q~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g 615 (848)
.+..++.+...+............|. .+||+||||||||++|+++|+.+ +.+++.++|+++...
T Consensus 12 ~~~~~~~~~~~~~k~~l~~~~~~~p~-~lLl~GppGtGKT~la~aiA~~l---~~~~i~v~~~~l~~~------------ 75 (293)
T 3t15_A 12 APAFMDKLVVHITKNFLKLPNIKVPL-ILGIWGGKGQGKSFQCELVFRKM---GINPIMMSAGELESG------------ 75 (293)
T ss_dssp CHHHHHHHHHHHHHTTSCCTTCCCCS-EEEEEECTTSCHHHHHHHHHHHH---TCCCEEEEHHHHHCC------------
T ss_pred CHHHHHHHHHHHHHHHHhcCCCCCCe-EEEEECCCCCCHHHHHHHHHHHh---CCCEEEEeHHHhhhc------------
Confidence 34444445444444433333333444 58999999999999999999998 789999999887432
Q ss_pred Ccccccc--cchhHHH----HcCCCeEEEEcCCCcCCh-------------HHHHHHHhhhcCcEEEcCCC--ceeecCC
Q 003094 616 YVGYTEG--GQLTEAV----RRRPYTVVLFDEIEKAHP-------------DVFNMMLQILEDGRLTDSKG--RTVDFKN 674 (848)
Q Consensus 616 ~~g~~~~--~~l~~~~----~~~~~~Vl~lDEid~l~~-------------~~~~~Ll~~le~g~~~~~~g--~~v~~~~ 674 (848)
|+|..+. ..++..+ +...++||||||||++.+ .+++.|+++|++.......+ ......+
T Consensus 76 ~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~ 155 (293)
T 3t15_A 76 NAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENAR 155 (293)
T ss_dssp ---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCC
T ss_pred cCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCC
Confidence 4444322 1223222 455789999999998865 36799999998654332222 2334568
Q ss_pred eEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhh--hccCeEEEcCCCCHHHHHHHHHHH
Q 003094 675 TLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFL--NRLDEMIVFRQLTKLEVKEIADIM 752 (848)
Q Consensus 675 ~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll--~R~d~~i~f~~l~~~el~~I~~~~ 752 (848)
++||+|||.... ++++|+ +|||..+.+ | +.++..+|++.+
T Consensus 156 v~vI~ttN~~~~------------------------------------ld~al~R~~R~d~~i~~-P-~~~~r~~Il~~~ 197 (293)
T 3t15_A 156 VPIIVTGNDFST------------------------------------LYAPLIRDGRMEKFYWA-P-TREDRIGVCTGI 197 (293)
T ss_dssp CCEEEECSSCCC--------------------------------------CHHHHHHHEEEEEEC-C-CHHHHHHHHHHH
T ss_pred cEEEEecCCccc------------------------------------CCHHHhCCCCCceeEeC-c-CHHHHHHHHHHh
Confidence 999999995432 457777 599777764 3 999999999765
Q ss_pred HH
Q 003094 753 LK 754 (848)
Q Consensus 753 l~ 754 (848)
+.
T Consensus 198 ~~ 199 (293)
T 3t15_A 198 FR 199 (293)
T ss_dssp HG
T ss_pred cc
Confidence 53
No 77
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.65 E-value=1.1e-15 Score=166.58 Aligned_cols=197 Identities=18% Similarity=0.183 Sum_probs=146.1
Q ss_pred HHHHHHHhhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccc
Q 003094 522 LLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFM 601 (848)
Q Consensus 522 l~~l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~ 601 (848)
..++++.-+++++|++++++.+.+.+... +....+|++||||||||++|+++++.+ +.+++.++++...
T Consensus 17 ~~k~rP~~~~~ivg~~~~~~~l~~~l~~~--------~~~~~~L~~G~~G~GKT~la~~la~~l---~~~~~~i~~~~~~ 85 (324)
T 3u61_B 17 EQKYRPSTIDECILPAFDKETFKSITSKG--------KIPHIILHSPSPGTGKTTVAKALCHDV---NADMMFVNGSDCK 85 (324)
T ss_dssp HHHSCCCSTTTSCCCHHHHHHHHHHHHTT--------CCCSEEEECSSTTSSHHHHHHHHHHHT---TEEEEEEETTTCC
T ss_pred HHhhCCCCHHHHhCcHHHHHHHHHHHHcC--------CCCeEEEeeCcCCCCHHHHHHHHHHHh---CCCEEEEcccccC
Confidence 34555566788999999999988888722 222357889999999999999999998 6778888876542
Q ss_pred cccchhcccCCCCCCcccccccchhHHHHc----CCCeEEEEcCCCcCC-hHHHHHHHhhhcCcEEEcCCCceeecCCeE
Q 003094 602 ERHTVSKLIGSPPGYVGYTEGGQLTEAVRR----RPYTVVLFDEIEKAH-PDVFNMMLQILEDGRLTDSKGRTVDFKNTL 676 (848)
Q Consensus 602 ~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~----~~~~Vl~lDEid~l~-~~~~~~Ll~~le~g~~~~~~g~~v~~~~~i 676 (848)
. ..+. ..+.+.... ..+.||||||+|.++ .+.++.|++++++.. .+++
T Consensus 86 ~-~~i~---------------~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~-----------~~~~ 138 (324)
T 3u61_B 86 I-DFVR---------------GPLTNFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYS-----------SNCS 138 (324)
T ss_dssp H-HHHH---------------THHHHHHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHG-----------GGCE
T ss_pred H-HHHH---------------HHHHHHHhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCC-----------CCcE
Confidence 1 1111 112222322 256899999999999 999999999998632 5678
Q ss_pred EEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHHHHHHHH
Q 003094 677 LIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEV 756 (848)
Q Consensus 677 iI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~~~l~~~ 756 (848)
||+++|... .+.+++++|| .++.|++++.+++.+|+...+..+
T Consensus 139 iI~~~n~~~------------------------------------~l~~~l~sR~-~~i~~~~~~~~e~~~il~~~~~~l 181 (324)
T 3u61_B 139 IIITANNID------------------------------------GIIKPLQSRC-RVITFGQPTDEDKIEMMKQMIRRL 181 (324)
T ss_dssp EEEEESSGG------------------------------------GSCTTHHHHS-EEEECCCCCHHHHHHHHHHHHHHH
T ss_pred EEEEeCCcc------------------------------------ccCHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHHH
Confidence 999998433 2568999999 789999999999999998888877
Q ss_pred HHHHhcCCCeEeecH-HHHHHHHHccCCCCCCchHHHHHHHHH
Q 003094 757 FDRLKTKDIELQVTE-RFRERVVEEGYNPSYGARPLRRAIMRL 798 (848)
Q Consensus 757 ~~~~~~~~~~l~i~~-~a~~~l~~~~~~~~~g~r~L~~~i~~~ 798 (848)
...+...+. .+++ +++++|+.. +..+.|.+.+.++..
T Consensus 182 ~~~~~~~~~--~~~~~~~~~~l~~~---~~gd~R~a~~~L~~~ 219 (324)
T 3u61_B 182 TEICKHEGI--AIADMKVVAALVKK---NFPDFRKTIGELDSY 219 (324)
T ss_dssp HHHHHHHTC--CBSCHHHHHHHHHH---TCSCTTHHHHHHHHH
T ss_pred HHHHHHcCC--CCCcHHHHHHHHHh---CCCCHHHHHHHHHHH
Confidence 666655554 4777 999999984 335667665555543
No 78
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.65 E-value=1.2e-15 Score=165.72 Aligned_cols=195 Identities=16% Similarity=0.228 Sum_probs=150.6
Q ss_pred hhhhhhhcCCCCCccCChHHHHHHHHHhccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCccc
Q 003094 186 NLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLV 265 (848)
Q Consensus 186 ~l~~~~~~~~ld~iiG~~~~~~~l~~~l~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~ 265 (848)
+|.++++|..+++++|++..++.+...+.....++++|+||||+|||++++.+++.+..... +..+++++++...
T Consensus 10 ~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~-----~~~~~~~~~~~~~ 84 (323)
T 1sxj_B 10 PWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSY-----ADGVLELNASDDR 84 (323)
T ss_dssp CHHHHTCCSSGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGH-----HHHEEEECTTSCC
T ss_pred cHHHhcCCCCHHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcc-----cCCEEEecCcccc
Confidence 58889999999999999999999999998877778999999999999999999999743210 2346677654422
Q ss_pred ccccccchHHHHHHHHHHHHH-------hCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcC--CceEEEEeeChHH
Q 003094 266 AGTKYRGEFEERLKKLMEEIK-------QSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR--GELQCIGATTLDE 336 (848)
Q Consensus 266 ~~~~~~g~~~~~l~~l~~~~~-------~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~atn~~~ 336 (848)
+ ...++.+++.+. .+.+.++||||+|.+.. ...+.|...++. ..+.+|++|+...
T Consensus 85 ------~--~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~--------~~~~~L~~~le~~~~~~~~il~~~~~~ 148 (323)
T 1sxj_B 85 ------G--IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA--------GAQQALRRTMELYSNSTRFAFACNQSN 148 (323)
T ss_dssp ------S--HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCH--------HHHHTTHHHHHHTTTTEEEEEEESCGG
T ss_pred ------C--hHHHHHHHHHHHhccccCCCCCceEEEEECcccCCH--------HHHHHHHHHHhccCCCceEEEEeCChh
Confidence 1 223444455443 23478999999999843 356677777763 5688888888765
Q ss_pred HHhhhhcChhhhcccCCCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCChhhHHHHHHHHh
Q 003094 337 YRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAG 416 (848)
Q Consensus 337 ~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~p~~a~~ll~~a~ 416 (848)
.+.+++.+||..+.|++|+.++..+++...+.+ .++.++++++..++..+.|. ++.++.+++.+.
T Consensus 149 -----~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~l~~~~~G~------~r~a~~~l~~~~ 213 (323)
T 1sxj_B 149 -----KIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKL----EDVKYTNDGLEAIIFTAEGD------MRQAINNLQSTV 213 (323)
T ss_dssp -----GSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHH----HTCCBCHHHHHHHHHHHTTC------HHHHHHHHHHHH
T ss_pred -----hchhHHHhhceEEeecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC------HHHHHHHHHHHH
Confidence 689999999999999999999999999887763 46778999999999887654 556777776654
No 79
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.65 E-value=1.4e-15 Score=159.54 Aligned_cols=199 Identities=25% Similarity=0.336 Sum_probs=139.3
Q ss_pred cCCCCCccCChHHHHHHHHHhc------------cCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEe
Q 003094 193 EGKLDPVVGRQPQIERVVQILG------------RRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLD 260 (848)
Q Consensus 193 ~~~ld~iiG~~~~~~~l~~~l~------------~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~ 260 (848)
..+|++++|.++.+.++.++.. ...+++++|+||||||||+++++++..+. ..++.++
T Consensus 12 ~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~----------~~~i~~~ 81 (254)
T 1ixz_A 12 KVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR----------VPFITAS 81 (254)
T ss_dssp SCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT----------CCEEEEE
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC----------CCEEEee
Confidence 3578899999987776655432 13356799999999999999999999873 3467777
Q ss_pred CCcccccccccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCC------CchHHHHHHHhhhhc----CCceEEEE
Q 003094 261 MGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAA------EGAIDAANILKPSLA----RGELQCIG 330 (848)
Q Consensus 261 ~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~------~~~~~~~~~L~~~l~----~~~v~vI~ 330 (848)
...+. ..+.+.....+..+++.+....+.++|+||+|.+...... .......+.+...++ ...+++++
T Consensus 82 ~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a 159 (254)
T 1ixz_A 82 GSDFV--EMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMA 159 (254)
T ss_dssp HHHHH--HSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEE
T ss_pred HHHHH--HHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEE
Confidence 66554 2345666777888898887677899999999998754321 111233444444443 23478888
Q ss_pred eeChHHHHhhhhcChhhhc--ccC-CCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChH-HHHHHHhhhhcccccCCChh
Q 003094 331 ATTLDEYRKHIEKDPALER--RFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDE-ALVSAAQLSYQYISDRFLPD 406 (848)
Q Consensus 331 atn~~~~~~~~~~d~al~~--Rf~-~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~-~l~~l~~~s~~~~~~~~~p~ 406 (848)
+|+.++ .+|+++.| ||. .+.|+.|+.++|.+||+.+.. +..++++ .+..++..+.++.+ +
T Consensus 160 ~t~~p~-----~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~------~~~~~~~~~~~~la~~~~G~~~-----~ 223 (254)
T 1ixz_A 160 ATNRPD-----ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR------GKPLAEDVDLALLAKRTPGFVG-----A 223 (254)
T ss_dssp EESCGG-----GSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHT------TSCBCTTCCHHHHHHTCTTCCH-----H
T ss_pred ccCCch-----hCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHc------CCCCCcccCHHHHHHHcCCCCH-----H
Confidence 999887 58999999 786 899999999999999986654 2333333 46778887777653 3
Q ss_pred hHHHHHHHHhhHH
Q 003094 407 KAIDLIDEAGSRV 419 (848)
Q Consensus 407 ~a~~ll~~a~~~~ 419 (848)
+...++..|...+
T Consensus 224 dl~~~~~~a~~~a 236 (254)
T 1ixz_A 224 DLENLLNEAALLA 236 (254)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5667777665443
No 80
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.65 E-value=1.9e-15 Score=163.11 Aligned_cols=211 Identities=21% Similarity=0.336 Sum_probs=140.2
Q ss_pred CCccCChHHHHHHHHHhcc--------------CCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCC
Q 003094 197 DPVVGRQPQIERVVQILGR--------------RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMG 262 (848)
Q Consensus 197 d~iiG~~~~~~~l~~~l~~--------------~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~ 262 (848)
+.++|+++.++.+...+.. ..+.++||+||||||||++|+++++.+ +.+++.++++
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l----------~~~~~~i~~~ 84 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA----------NAPFIKVEAT 84 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH----------TCCEEEEEGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEcch
Confidence 3589999999998877654 457899999999999999999999998 4568899988
Q ss_pred cccccccccch-HHHHHHHHHHHH----Hh-CCCeEEEEcccchhhhCCCCCch----HHHHHHHhhhhcCC--------
Q 003094 263 LLVAGTKYRGE-FEERLKKLMEEI----KQ-SDEIILFIDEVHTLIGAGAAEGA----IDAANILKPSLARG-------- 324 (848)
Q Consensus 263 ~l~~~~~~~g~-~~~~l~~l~~~~----~~-~~~~IL~IDEid~l~~~~~~~~~----~~~~~~L~~~l~~~-------- 324 (848)
.+... .+.|. ....+..++... .. ..+.||||||+|.+.+.....+. ..+++.|..+++..
T Consensus 85 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~ 163 (310)
T 1ofh_A 85 KFTEV-GYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGM 163 (310)
T ss_dssp GGSSC-CSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEE
T ss_pred hcccC-CccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEeccccc
Confidence 77542 23332 223455544421 11 23569999999999765322221 12467777777753
Q ss_pred ----ceEEEEeeChHHHHhhhhcChhhhcccC-CCcCCCCCHHHHHHHHHH----HHHHHhh---hh--cCCCChHHHHH
Q 003094 325 ----ELQCIGATTLDEYRKHIEKDPALERRFQ-PVKVPEPSVDETIQILKG----LRERYEI---HH--KLRYTDEALVS 390 (848)
Q Consensus 325 ----~v~vI~atn~~~~~~~~~~d~al~~Rf~-~i~~~~p~~~e~~~Il~~----~~~~~~~---~~--~~~~s~~~l~~ 390 (848)
.+++|++++.... ....+++++.+||. .|.|++|+.+++.+|++. +..++.. .. .+.++++++..
T Consensus 164 ~~~~~~~~i~~~~~~~~-~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 242 (310)
T 1ofh_A 164 VKTDHILFIASGAFQVA-RPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKK 242 (310)
T ss_dssp EECTTCEEEEEECCSSS-CGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHH
T ss_pred ccCCcEEEEEcCCcccC-CcccCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHH
Confidence 6788888632100 11268999999997 699999999999999983 3332211 12 24688999999
Q ss_pred HHhhhhccc--ccCCChhhHHHHHHHHhhHH
Q 003094 391 AAQLSYQYI--SDRFLPDKAIDLIDEAGSRV 419 (848)
Q Consensus 391 l~~~s~~~~--~~~~~p~~a~~ll~~a~~~~ 419 (848)
++..+...- ......+.+..+++.+...+
T Consensus 243 l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~ 273 (310)
T 1ofh_A 243 IAEAAFRVNEKTENIGARRLHTVMERLMDKI 273 (310)
T ss_dssp HHHHHHHHHHHSCCCTTHHHHHHHHHHSHHH
T ss_pred HHHHhhhhcccccccCcHHHHHHHHHHHHhh
Confidence 888763210 01123455666666665443
No 81
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=99.65 E-value=3.4e-15 Score=197.15 Aligned_cols=445 Identities=17% Similarity=0.181 Sum_probs=234.4
Q ss_pred CCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccccccccchHHHHHHHHHHHH----H------
Q 003094 217 TKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEI----K------ 286 (848)
Q Consensus 217 ~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~~~~g~~~~~l~~l~~~~----~------ 286 (848)
...++||+||||||||+++..+...+ .+..++.++++..... ..+...++.- .
T Consensus 1303 ~~~pvLL~GptGtGKT~li~~~L~~l---------~~~~~~~infS~~Tta--------~~l~~~~e~~~e~~~~~~~G~ 1365 (3245)
T 3vkg_A 1303 EHRPLILCGPPGSGKTMTLTSTLRAF---------PDFEVVSLNFSSATTP--------ELLLKTFDHHCEYKRTPSGET 1365 (3245)
T ss_dssp TTCCCEEESSTTSSHHHHHHHHGGGC---------TTEEEEEECCCTTCCH--------HHHHHHHHHHEEEEECTTSCE
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHhC---------CCCceEEEEeeCCCCH--------HHHHHHHhhcceEEeccCCCc
Confidence 56889999999999998876654433 2456778888765532 1222222211 0
Q ss_pred ------hCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCC--------------ceEEEEeeChHHHHhhhhcChh
Q 003094 287 ------QSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARG--------------ELQCIGATTLDEYRKHIEKDPA 346 (848)
Q Consensus 287 ------~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~--------------~v~vI~atn~~~~~~~~~~d~a 346 (848)
.+..+|+||||++.- ..+..|.....+.|+++++.+ .+.+|+|+|++...+...++++
T Consensus 1366 ~~~p~~~Gk~~VlFiDDiNmp--~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~R 1443 (3245)
T 3vkg_A 1366 VLRPTQLGKWLVVFCDEINLP--STDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHR 1443 (3245)
T ss_dssp EEEESSTTCEEEEEETTTTCC--CCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHH
T ss_pred ccCCCcCCceEEEEecccCCC--CccccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHH
Confidence 123479999999963 444456666788888887632 3789999998753455679999
Q ss_pred hhcccCCCcCCCCCHHHHHHHHHHHHHHHhhhh-cC-CCChHHHHHHHhhh----hcccc-----cCCChhhHHHHHHHH
Q 003094 347 LERRFQPVKVPEPSVDETIQILKGLRERYEIHH-KL-RYTDEALVSAAQLS----YQYIS-----DRFLPDKAIDLIDEA 415 (848)
Q Consensus 347 l~~Rf~~i~~~~p~~~e~~~Il~~~~~~~~~~~-~~-~~s~~~l~~l~~~s----~~~~~-----~~~~p~~a~~ll~~a 415 (848)
+.|||..+.++.|+.++...|+..+...+.... .+ .+.+..+.+...+. ..+.+ -.|.+++...++.-.
T Consensus 1444 f~r~F~vi~i~~ps~esL~~If~til~~~l~~~p~l~~~~~~lv~ati~ly~~v~~~~lp~~k~HY~FnLRDLsrv~qGl 1523 (3245)
T 3vkg_A 1444 FLRHAPILLVDFPSTSSLTQIYGTFNRALMKLLPNLRSFADNLTDAMVEFYSESQKRFTPDIQAHYIYSPRELSRWDRAL 1523 (3245)
T ss_dssp HHTTCCEEECCCCCHHHHHHHHHHHHHHHTTSCGGGTTSHHHHHHHHHHHHHHHHHHSCTTTSTTCCCCHHHHHHHHHHH
T ss_pred HHhhceEEEeCCCCHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCccccHHHHHHHHHHH
Confidence 999999999999999999999887765432110 11 11222233322221 11111 012233322222221
Q ss_pred hhHHHHhhcCCchH-HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHH------HHHHHHHHHHHHhhhhh-h-hhhh-
Q 003094 416 GSRVRLRHAQLPEE-ARELEKELRQITKEKNEAVRGQDFEKAGELRDRE------MDLKAQISALVDKGKEM-S-KAET- 485 (848)
Q Consensus 416 ~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~------~~l~~~~~~~~~~~~~~-~-~~~~- 485 (848)
+....-........ ++-..+ +..+-+.++. .-....+.......-.. . ....
T Consensus 1524 l~~~~~~~~~~~~~lvrLW~H------------------E~~RVF~DRLv~~~Dr~~f~~~l~~~~~~~F~~~~~~~~~~ 1585 (3245)
T 3vkg_A 1524 LEAIQTMDGCTLEGLVRLWAH------------------EALRLFQDRLVETEEKEWTDKKIDEVALKHFPSVNLDALKR 1585 (3245)
T ss_dssp HHHHHTSSCCCTTHHHHHHHH------------------HHHHHHTTTCSSHHHHHHHHHHHHHHHHHHCTTSCGGGGCS
T ss_pred HHhcCccccCCHHHHHHHHHH------------------HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCcchhhhccc
Confidence 11100000000111 111111 1112121110 00111111111111000 0 0000
Q ss_pred ---cc---CCCCCccCHHHHHHHHHHhhCCCCcccCcchHHHHHHHH-HHhhccccChHHHHHHHHHHHHHHHccCCCCC
Q 003094 486 ---EA---GDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKME-ETLHKRVIGQDEAVKAISRAIRRARVGLKNPN 558 (848)
Q Consensus 486 ---~~---~~~~~~v~~~di~~~~~~~~g~p~~~~~~~~~~~l~~l~-~~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~ 558 (848)
.+ ......++.+++...+... +..+. ....-+++--++++++|.+..+-. +
T Consensus 1586 pllf~~f~~~~Y~~v~~~~l~~~l~~~---------------L~~yn~~~~~m~LVlF~daleHv~RI~RIL-------~ 1643 (3245)
T 3vkg_A 1586 PILYSNWLTKDYQPVNRSDLREYVKAR---------------LKVFYEEELDVPLVLFNEVLDHILRIDRVF-------R 1643 (3245)
T ss_dssp SCCCCSSCC----CCCHHHHHHHHHHH---------------HHTTC------CCCCCHHHHHHHHHHHHHH-------T
T ss_pred CcchhhhccccCccCCHHHHHHHHHHH---------------HHHHHhcccCceEEeHHHHHHHHHHHHHHH-------c
Confidence 00 0001112222222221110 00000 001124667788999998887766 4
Q ss_pred CCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhcccCCCCCCcccccccchhHHH----HcCCC
Q 003094 559 RPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAV----RRRPY 634 (848)
Q Consensus 559 ~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~----~~~~~ 634 (848)
.|.+|.||+|..|+||++++|..|... +..++.+.++.-++. .+-...+...+ -+..+
T Consensus 1644 qp~GhaLLVGvgGSGkqSLtrLAa~i~---~~~vfqi~i~k~Y~~---------------~~f~eDLk~l~~~aG~~~~~ 1705 (3245)
T 3vkg_A 1644 QPQGHALLIGVSGGGKSVLSRFVAWMN---GLSIYTIKVNNNYKS---------------SDFDDDLRMLLKRAGCKEEK 1705 (3245)
T ss_dssp STTCCEEEEESTTSSHHHHHHHHHHHT---TCEEECCC----CCH---------------HHHHHHHHHHHHHHHTSCCC
T ss_pred cCCCCeEEecCCCCcHHHHHHHHHHHh---CCeeEEEeeeCCCCH---------------HHHHHHHHHHHHHHhcCCCC
Confidence 667899999999999999999999875 666666655443211 10011222222 24567
Q ss_pred eEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCch-hhhc---cCcccccccCCCcccccHHH
Q 003094 635 TVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSS-VIEK---GGRRIGFDLDYDEKDSSYNR 710 (848)
Q Consensus 635 ~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~-~i~~---~~~~~~f~~~~~~~~~~~~~ 710 (848)
.|++|+|.+-..+.+++.+..+|.+|++++.... ..-+ ++.. .....|+. ..+.+..+..
T Consensus 1706 ~vFL~tD~qi~~e~FLE~IN~lL~sGEVP~LF~~--------------dE~~~i~~~~r~~a~~~g~~--~dt~~~l~~~ 1769 (3245)
T 3vkg_A 1706 ICFIFDESNVLESSFLERMNTLLAGGEVPGLFEG--------------EEFTALMHACKETAQRNGLI--LDSEEELYKY 1769 (3245)
T ss_dssp EEEEEEGGGCSSTHHHHHHHHHHHHSCCTTSSCT--------------TTHHHHHHHHHHHHHHTTCC--CCCHHHHHHH
T ss_pred EEEEEeccccccHHHHHHHHHHhccCCccccCCH--------------HHHHHHHHHHHHHHHhcCCC--CCCHHHHHHH
Confidence 8999999999999999999999999987642210 0000 0000 00011110 0122333444
Q ss_pred HHHHHHHHHHhh---------------cChhhhhccCeEEEcCCCCHHHHHHHHHHHHHH
Q 003094 711 IKSLVTEELKQY---------------FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKE 755 (848)
Q Consensus 711 ~~~~~~~~l~~~---------------~~~~ll~R~d~~i~f~~l~~~el~~I~~~~l~~ 755 (848)
+.+.++++|+-. -.|+|+++| .+-+|.+++.+.+..+...++..
T Consensus 1770 Fi~rvr~NLHvVL~mSPvg~~fR~R~r~fPaLvncc-tIDWf~~Wp~eAL~~Va~~fl~~ 1828 (3245)
T 3vkg_A 1770 FTSQVRRNLHVVFTMNPASPDFHNRSATSPALFNRC-VLDWFGEWSPEALFQVGSEFTRN 1828 (3245)
T ss_dssp HHHHHTTTCCEEEEECTTSTTTTC----CTHHHHHS-EEEEEESCCHHHHHHHHHHHTTT
T ss_pred HHHHHHHcCEEEEEECCCCHHHHHHHHHChHHhhCc-eeeecCCCCHHHHHHHHHHHHhh
Confidence 444444444311 138999999 89999999999999999887754
No 82
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.65 E-value=1.4e-15 Score=167.40 Aligned_cols=205 Identities=16% Similarity=0.190 Sum_probs=149.2
Q ss_pred hhhhhhhhhhcCCCCCccCChHHHHHHHHHhccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCC
Q 003094 183 YGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMG 262 (848)
Q Consensus 183 ~~~~l~~~~~~~~ld~iiG~~~~~~~l~~~l~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~ 262 (848)
-..+|.++++|..+++++|+++.++.+...+......+++|+||||||||++++.+++.+..... ....+..++++
T Consensus 23 ~~~~~~~k~~p~~~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~----~~~~~~~~~~~ 98 (353)
T 1sxj_D 23 AQQPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDL----MKSRILELNAS 98 (353)
T ss_dssp ---CHHHHTCCSSTTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHH----HTTSEEEECSS
T ss_pred cCccHHHhcCCCCHHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcc----cccceEEEccc
Confidence 34579999999999999999999999999998877788999999999999999999998742100 02346677765
Q ss_pred cccccccccchHHHHHHHHHHH-----------HH-hCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhc--CCceEE
Q 003094 263 LLVAGTKYRGEFEERLKKLMEE-----------IK-QSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLA--RGELQC 328 (848)
Q Consensus 263 ~l~~~~~~~g~~~~~l~~l~~~-----------~~-~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~--~~~v~v 328 (848)
.... .+.....+...... .. ...+.||||||+|.+.+ ..++.|...++ .....+
T Consensus 99 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~--------~~~~~Ll~~le~~~~~~~~ 166 (353)
T 1sxj_D 99 DERG----ISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTA--------DAQSALRRTMETYSGVTRF 166 (353)
T ss_dssp SCCC----HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCH--------HHHHHHHHHHHHTTTTEEE
T ss_pred cccc----hHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCH--------HHHHHHHHHHHhcCCCceE
Confidence 5321 11111111111110 00 13456999999999853 35677777776 345677
Q ss_pred EEeeChHHHHhhhhcChhhhcccCCCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCChhhH
Q 003094 329 IGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKA 408 (848)
Q Consensus 329 I~atn~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~p~~a 408 (848)
|.+||... .+.+++.+||..+.|++|+.++...++...+. ..++.++++++..++..+.+. ++.+
T Consensus 167 il~~~~~~-----~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~----~~~~~i~~~~l~~l~~~~~G~------~r~~ 231 (353)
T 1sxj_D 167 CLICNYVT-----RIIDPLASQCSKFRFKALDASNAIDRLRFISE----QENVKCDDGVLERILDISAGD------LRRG 231 (353)
T ss_dssp EEEESCGG-----GSCHHHHHHSEEEECCCCCHHHHHHHHHHHHH----TTTCCCCHHHHHHHHHHTSSC------HHHH
T ss_pred EEEeCchh-----hCcchhhccCceEEeCCCCHHHHHHHHHHHHH----HhCCCCCHHHHHHHHHHcCCC------HHHH
Confidence 77887765 58999999999999999999999999887765 356789999999999988754 5567
Q ss_pred HHHHHHHhhH
Q 003094 409 IDLIDEAGSR 418 (848)
Q Consensus 409 ~~ll~~a~~~ 418 (848)
+.+++.+...
T Consensus 232 ~~~l~~~~~~ 241 (353)
T 1sxj_D 232 ITLLQSASKG 241 (353)
T ss_dssp HHHHHHTHHH
T ss_pred HHHHHHHHHh
Confidence 8888776544
No 83
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.64 E-value=2.3e-15 Score=158.15 Aligned_cols=202 Identities=19% Similarity=0.304 Sum_probs=136.2
Q ss_pred hhccccChHHHHHHHHHHHHHHHcc--CCC-CCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccc
Q 003094 529 LHKRVIGQDEAVKAISRAIRRARVG--LKN-PNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHT 605 (848)
Q Consensus 529 l~~~vigq~~~~~~l~~~~~~~~~~--~~~-~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~ 605 (848)
-+++++|++.+++.+.+.+...... ... ...+..+++|+||||||||++|+++|..+ +.+++.++++.+...
T Consensus 10 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~---~~~~~~i~~~~~~~~-- 84 (257)
T 1lv7_A 10 TFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA---KVPFFTISGSDFVEM-- 84 (257)
T ss_dssp CGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH---TCCEEEECSCSSTTS--
T ss_pred CHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc---CCCEEEEeHHHHHHH--
Confidence 3568999999999998877653211 000 01122359999999999999999999987 668999998876432
Q ss_pred hhcccCCCCCCccccc--ccchhHHHHcCCCeEEEEcCCCcCCh--------------HHHHHHHhhhcCcEEEcCCCce
Q 003094 606 VSKLIGSPPGYVGYTE--GGQLTEAVRRRPYTVVLFDEIEKAHP--------------DVFNMMLQILEDGRLTDSKGRT 669 (848)
Q Consensus 606 ~~~l~g~~~g~~g~~~--~~~l~~~~~~~~~~Vl~lDEid~l~~--------------~~~~~Ll~~le~g~~~~~~g~~ 669 (848)
+.|... ...++..+....++++||||+|.+.+ ..++.++..++...
T Consensus 85 ----------~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-------- 146 (257)
T 1lv7_A 85 ----------FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFE-------- 146 (257)
T ss_dssp ----------CCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCC--------
T ss_pred ----------hhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcc--------
Confidence 222221 13345555566678999999987643 46777888776522
Q ss_pred eecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhh--ccCeEEEcCCCCHHHHHH
Q 003094 670 VDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLN--RLDEMIVFRQLTKLEVKE 747 (848)
Q Consensus 670 v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~--R~d~~i~f~~l~~~el~~ 747 (848)
...++++|++||.... +++.+++ ||+..+.|++++.++..+
T Consensus 147 -~~~~~~vI~~tn~~~~------------------------------------l~~~l~r~~rf~~~i~i~~P~~~~r~~ 189 (257)
T 1lv7_A 147 -GNEGIIVIAATNRPDV------------------------------------LDPALLRPGRFDRQVVVGLPDVRGREQ 189 (257)
T ss_dssp -SSSCEEEEEEESCTTT------------------------------------SCGGGGSTTSSCEEEECCCCCHHHHHH
T ss_pred -cCCCEEEEEeeCCchh------------------------------------CCHHHcCCCcCCeEEEeCCCCHHHHHH
Confidence 1246789999985432 4566765 999999999999999998
Q ss_pred HHHHHHHHHHHHHhcCCCeEeecHHH-HHHHHHccCCCCCCchHHHHHHHHHHHHHH
Q 003094 748 IADIMLKEVFDRLKTKDIELQVTERF-RERVVEEGYNPSYGARPLRRAIMRLLEDSM 803 (848)
Q Consensus 748 I~~~~l~~~~~~~~~~~~~l~i~~~a-~~~l~~~~~~~~~g~r~L~~~i~~~l~~~l 803 (848)
|++.++.. . .+++++ ...++. ..+.++.|+|++.+++.+..+.
T Consensus 190 il~~~~~~---------~--~l~~~~~~~~la~--~~~G~~~~dl~~l~~~a~~~a~ 233 (257)
T 1lv7_A 190 ILKVHMRR---------V--PLAPDIDAAIIAR--GTPGFSGADLANLVNEAALFAA 233 (257)
T ss_dssp HHHHHHTT---------S--CBCTTCCHHHHHH--TCTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhc---------C--CCCccccHHHHHH--HcCCCCHHHHHHHHHHHHHHHH
Confidence 88766532 1 123333 344444 2334588999888887766443
No 84
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.64 E-value=5e-16 Score=166.34 Aligned_cols=158 Identities=15% Similarity=0.171 Sum_probs=111.7
Q ss_pred CCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccccccccchHHHHHHHHHHHH----HhCCCe
Q 003094 216 RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEI----KQSDEI 291 (848)
Q Consensus 216 ~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~~~~g~~~~~l~~l~~~~----~~~~~~ 291 (848)
+.+.++||+||||||||++|+++|+.+ +.+++.++++.+. ..+.|+.+..+..+|..+ +...++
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l----------~~~~i~v~~~~l~--~~~~g~~~~~i~~~f~~a~~~~~~~~~~ 101 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKM----------GINPIMMSAGELE--SGNAGEPAKLIRQRYREAAEIIRKGNMC 101 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHH----------TCCCEEEEHHHHH--CC---HHHHHHHHHHHHHHHHHTTSSCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEeHHHhh--hccCchhHHHHHHHHHHHHHHHhcCCCe
Confidence 556788999999999999999999999 5778999998887 457889999999999888 466789
Q ss_pred EEEEcccchhhhCCCCC-----chHHHHHHHhhhhc---------------CCceEEEEeeChHHHHhhhhcChhhhc--
Q 003094 292 ILFIDEVHTLIGAGAAE-----GAIDAANILKPSLA---------------RGELQCIGATTLDEYRKHIEKDPALER-- 349 (848)
Q Consensus 292 IL~IDEid~l~~~~~~~-----~~~~~~~~L~~~l~---------------~~~v~vI~atn~~~~~~~~~~d~al~~-- 349 (848)
||||||+|.+.+..... ....+.+.|..+++ ..++++|+|||..+ .+++++.|
T Consensus 102 vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~-----~ld~al~R~~ 176 (293)
T 3t15_A 102 CLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFS-----TLYAPLIRDG 176 (293)
T ss_dssp CEEEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCC-----C--CHHHHHH
T ss_pred EEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcc-----cCCHHHhCCC
Confidence 99999999998643221 12345567776663 34689999999887 68999997
Q ss_pred ccC-CCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhccccc
Q 003094 350 RFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISD 401 (848)
Q Consensus 350 Rf~-~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~ 401 (848)
||+ .+. .|+.+++.+|++.+.. .. .++ ...++.++.+|.+.
T Consensus 177 R~d~~i~--~P~~~~r~~Il~~~~~----~~--~~~---~~~l~~~~~~~~~~ 218 (293)
T 3t15_A 177 RMEKFYW--APTREDRIGVCTGIFR----TD--NVP---AEDVVKIVDNFPGQ 218 (293)
T ss_dssp HEEEEEE--CCCHHHHHHHHHHHHG----GG--CCC---HHHHHHHHHHSCSC
T ss_pred CCceeEe--CcCHHHHHHHHHHhcc----CC--CCC---HHHHHHHhCCCCcc
Confidence 887 455 4699999999996654 22 233 34455666676554
No 85
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.64 E-value=4.1e-16 Score=148.76 Aligned_cols=143 Identities=13% Similarity=0.128 Sum_probs=107.6
Q ss_pred cccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhcccC
Q 003094 532 RVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIG 611 (848)
Q Consensus 532 ~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g 611 (848)
+++|++.++..+.+.+..... ...++||+||||||||++|+++|+.....+.+|+ ++|+.+.+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~-------~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~-------- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSE-------TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA-------- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTT-------CCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS--------
T ss_pred CceeCCHHHHHHHHHHHHHhC-------CCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc--------
Confidence 578999999999998887632 1235999999999999999999998766788999 999876432
Q ss_pred CCCCCcccccccchhHHHHcCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCchhhhcc
Q 003094 612 SPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKG 691 (848)
Q Consensus 612 ~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~i~~~ 691 (848)
....+.+..+.+++|||||||.++++.|..|+++|+... .++.+|+|||......
T Consensus 66 -----------~~~~~~~~~a~~g~l~ldei~~l~~~~q~~Ll~~l~~~~-----------~~~~~I~~t~~~~~~~--- 120 (145)
T 3n70_A 66 -----------PQLNDFIALAQGGTLVLSHPEHLTREQQYHLVQLQSQEH-----------RPFRLIGIGDTSLVEL--- 120 (145)
T ss_dssp -----------SCHHHHHHHHTTSCEEEECGGGSCHHHHHHHHHHHHSSS-----------CSSCEEEEESSCHHHH---
T ss_pred -----------hhhhcHHHHcCCcEEEEcChHHCCHHHHHHHHHHHhhcC-----------CCEEEEEECCcCHHHH---
Confidence 123344555667899999999999999999999995422 4678999998543211
Q ss_pred CcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCe-EEEcCCCC
Q 003094 692 GRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDE-MIVFRQLT 741 (848)
Q Consensus 692 ~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~-~i~f~~l~ 741 (848)
.-...|+++|+.|+.. .|.++||.
T Consensus 121 --------------------------~~~~~~~~~L~~rl~~~~i~lPpLR 145 (145)
T 3n70_A 121 --------------------------AASNHIIAELYYCFAMTQIACLPLT 145 (145)
T ss_dssp --------------------------HHHSCCCHHHHHHHHHHEEECCCCC
T ss_pred --------------------------HHcCCCCHHHHHHhcCCEEeCCCCC
Confidence 0123588999999855 48888874
No 86
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.64 E-value=2.8e-15 Score=169.37 Aligned_cols=196 Identities=21% Similarity=0.332 Sum_probs=137.4
Q ss_pred hccccChHHHHHHHHHHHHHHHc-------cCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEeccccccc
Q 003094 530 HKRVIGQDEAVKAISRAIRRARV-------GLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFME 602 (848)
Q Consensus 530 ~~~vigq~~~~~~l~~~~~~~~~-------~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~ 602 (848)
+++|+|++++++.+.+.+..... +... ..++||+||||||||++|+++|..+ +.+|+.++++++..
T Consensus 15 f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~----p~gvLL~GppGtGKT~Laraia~~~---~~~f~~is~~~~~~ 87 (476)
T 2ce7_A 15 FKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARM----PKGILLVGPPGTGKTLLARAVAGEA---NVPFFHISGSDFVE 87 (476)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCC----CSEEEEECCTTSSHHHHHHHHHHHH---TCCEEEEEGGGTTT
T ss_pred HHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCC----CCeEEEECCCCCCHHHHHHHHHHHc---CCCeeeCCHHHHHH
Confidence 56799999999999888765421 2222 2349999999999999999999987 78899999888754
Q ss_pred ccchhcccCCCCCCccccc--ccchhHHHHcCCCeEEEEcCCCcCCh--------------HHHHHHHhhhcCcEEEcCC
Q 003094 603 RHTVSKLIGSPPGYVGYTE--GGQLTEAVRRRPYTVVLFDEIEKAHP--------------DVFNMMLQILEDGRLTDSK 666 (848)
Q Consensus 603 ~~~~~~l~g~~~g~~g~~~--~~~l~~~~~~~~~~Vl~lDEid~l~~--------------~~~~~Ll~~le~g~~~~~~ 666 (848)
. |+|... ...++..++...++||||||+|.+.+ .+++.|+..|+.-.
T Consensus 88 ~------------~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~----- 150 (476)
T 2ce7_A 88 L------------FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFD----- 150 (476)
T ss_dssp C------------CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSC-----
T ss_pred H------------HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccC-----
Confidence 2 333221 23456666667789999999999854 36788888887311
Q ss_pred CceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhh--ccCeEEEcCCCCHHH
Q 003094 667 GRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLN--RLDEMIVFRQLTKLE 744 (848)
Q Consensus 667 g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~--R~d~~i~f~~l~~~e 744 (848)
...+++||++||... .++|+++. |||..|.+++++.++
T Consensus 151 ----~~~~viVIaaTn~~~------------------------------------~Ld~allR~gRFd~~i~i~~Pd~~~ 190 (476)
T 2ce7_A 151 ----SKEGIIVMAATNRPD------------------------------------ILDPALLRPGRFDKKIVVDPPDMLG 190 (476)
T ss_dssp ----GGGTEEEEEEESCGG------------------------------------GSCGGGGSTTSSCEEEECCCCCHHH
T ss_pred ----CCCCEEEEEecCChh------------------------------------hhchhhcccCcceeEeecCCCCHHH
Confidence 124789999998533 24567764 999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeEeecHHH-HHHHHHccCCCCCCchHHHHHHHHHHHHH
Q 003094 745 VKEIADIMLKEVFDRLKTKDIELQVTERF-RERVVEEGYNPSYGARPLRRAIMRLLEDS 802 (848)
Q Consensus 745 l~~I~~~~l~~~~~~~~~~~~~l~i~~~a-~~~l~~~~~~~~~g~r~L~~~i~~~l~~~ 802 (848)
..+|++..+... . +.+++ +..|+. ..+.+..++|++.+++....+
T Consensus 191 R~~Il~~~~~~~-------~----l~~~v~l~~la~--~t~G~sgadL~~lv~~Aal~A 236 (476)
T 2ce7_A 191 RKKILEIHTRNK-------P----LAEDVNLEIIAK--RTPGFVGADLENLVNEAALLA 236 (476)
T ss_dssp HHHHHHHHHTTS-------C----BCTTCCHHHHHH--TCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-------C----CcchhhHHHHHH--hcCCCcHHHHHHHHHHHHHHH
Confidence 999887655431 1 22222 455655 333444578888888766544
No 87
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.63 E-value=2.7e-15 Score=160.18 Aligned_cols=200 Identities=19% Similarity=0.310 Sum_probs=134.9
Q ss_pred hccccChHHHHHHHHHHHHHHH--------ccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccc
Q 003094 530 HKRVIGQDEAVKAISRAIRRAR--------VGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFM 601 (848)
Q Consensus 530 ~~~vigq~~~~~~l~~~~~~~~--------~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~ 601 (848)
+++++|++.+++.|.+.+.... .+.. +..++||+||||||||++|+++|+.+ +.+++.+++..+.
T Consensus 16 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~ll~G~~GtGKT~la~~la~~~---~~~~~~v~~~~~~ 88 (285)
T 3h4m_A 16 YEDIGGLEKQMQEIREVVELPLKHPELFEKVGIE----PPKGILLYGPPGTGKTLLAKAVATET---NATFIRVVGSELV 88 (285)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCC----CCSEEEEESSSSSSHHHHHHHHHHHT---TCEEEEEEGGGGC
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCC----CCCeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEehHHHH
Confidence 5679999999999988876532 1222 22459999999999999999999987 7789988887764
Q ss_pred cccchhcccCCCCCCcccccc--cchhHHHHcCCCeEEEEcCCCcC-----------ChHHHHHHHhhhcCcEEEcCCCc
Q 003094 602 ERHTVSKLIGSPPGYVGYTEG--GQLTEAVRRRPYTVVLFDEIEKA-----------HPDVFNMMLQILEDGRLTDSKGR 668 (848)
Q Consensus 602 ~~~~~~~l~g~~~g~~g~~~~--~~l~~~~~~~~~~Vl~lDEid~l-----------~~~~~~~Ll~~le~g~~~~~~g~ 668 (848)
.. +.|.... ..++..++...++||||||+|.+ .+..++.|+.+++...-.
T Consensus 89 ~~------------~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~----- 151 (285)
T 3h4m_A 89 KK------------FIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGF----- 151 (285)
T ss_dssp CC------------STTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTT-----
T ss_pred Hh------------ccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCC-----
Confidence 32 3333221 34556666777899999999987 556666666666431100
Q ss_pred eeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhh--ccCeEEEcCCCCHHHHH
Q 003094 669 TVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLN--RLDEMIVFRQLTKLEVK 746 (848)
Q Consensus 669 ~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~--R~d~~i~f~~l~~~el~ 746 (848)
....+++||+|||... .+++++++ ||+.++.|++++.++..
T Consensus 152 -~~~~~~~vI~ttn~~~------------------------------------~l~~~l~~~~Rf~~~i~~~~p~~~~r~ 194 (285)
T 3h4m_A 152 -DARGDVKIIGATNRPD------------------------------------ILDPAILRPGRFDRIIEVPAPDEKGRL 194 (285)
T ss_dssp -CSSSSEEEEEECSCGG------------------------------------GBCHHHHSTTSEEEEEECCCCCHHHHH
T ss_pred -CCCCCEEEEEeCCCch------------------------------------hcCHHHcCCCcCCeEEEECCCCHHHHH
Confidence 0124788999998432 25678887 99889999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHHHHHHHH
Q 003094 747 EIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDS 802 (848)
Q Consensus 747 ~I~~~~l~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~l~~~ 802 (848)
+|+...+... +.. .+..+..|+. ....+..++++..+......+
T Consensus 195 ~il~~~~~~~-------~~~---~~~~~~~l~~--~~~g~~~~~i~~l~~~a~~~a 238 (285)
T 3h4m_A 195 EILKIHTRKM-------NLA---EDVNLEEIAK--MTEGCVGAELKAICTEAGMNA 238 (285)
T ss_dssp HHHHHHHTTS-------CBC---TTCCHHHHHH--HCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-------CCC---CcCCHHHHHH--HcCCCCHHHHHHHHHHHHHHH
Confidence 9997665331 111 1112345555 233445677777666555444
No 88
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.62 E-value=5.6e-15 Score=161.32 Aligned_cols=207 Identities=17% Similarity=0.244 Sum_probs=139.9
Q ss_pred HHHHHHHHHhhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccc
Q 003094 520 DRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSE 599 (848)
Q Consensus 520 ~~l~~l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~ 599 (848)
..+.++++.+...++||+++++.+...+... .++||+||||||||++|+++|+.+ +.+++.++|..
T Consensus 16 ~~~~~~~~~~~~~i~g~~~~~~~l~~~l~~~-----------~~vll~G~pGtGKT~la~~la~~~---~~~~~~i~~~~ 81 (331)
T 2r44_A 16 NKIKEVIDEVGKVVVGQKYMINRLLIGICTG-----------GHILLEGVPGLAKTLSVNTLAKTM---DLDFHRIQFTP 81 (331)
T ss_dssp HHHHHHHHHHTTTCCSCHHHHHHHHHHHHHT-----------CCEEEESCCCHHHHHHHHHHHHHT---TCCEEEEECCT
T ss_pred HHHHHHHHHhccceeCcHHHHHHHHHHHHcC-----------CeEEEECCCCCcHHHHHHHHHHHh---CCCeEEEecCC
Confidence 3466788899999999999998888777642 259999999999999999999987 56788888743
Q ss_pred cccccchhcccCCCCCCcccccccchhHHHHcC--CCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceee-cCCeE
Q 003094 600 FMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRR--PYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVD-FKNTL 676 (848)
Q Consensus 600 ~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~--~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~-~~~~i 676 (848)
... ...++|... + .. ..+.+. .+.. ..+||||||++.+++.+++.|++.|+++.++.. |.... ..+++
T Consensus 82 ~~~---~~~l~g~~~-~-~~-~~~~~~--~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~-g~~~~~~~~~~ 152 (331)
T 2r44_A 82 DLL---PSDLIGTMI-Y-NQ-HKGNFE--VKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIG-DTTYPLDNPFL 152 (331)
T ss_dssp TCC---HHHHHEEEE-E-ET-TTTEEE--EEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEET-TEEEECCSSCE
T ss_pred CCC---hhhcCCcee-e-cC-CCCceE--eccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeC-CEEEECCCCEE
Confidence 211 112222210 0 00 000000 0011 137999999999999999999999999988764 33333 34678
Q ss_pred EEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHHHHHHHH
Q 003094 677 LIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEV 756 (848)
Q Consensus 677 iI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~~~l~~~ 756 (848)
+|+|+|.... .+ . ..++++|++||+..+.+++++.++..+|+...+...
T Consensus 153 viat~np~~~--------~~----------~-------------~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~~ 201 (331)
T 2r44_A 153 VLATQNPVEQ--------EG----------T-------------YPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNMN 201 (331)
T ss_dssp EEEEECTTCC--------SC----------C-------------CCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCTT
T ss_pred EEEecCCCcc--------cC----------c-------------ccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccccC
Confidence 8888873221 00 0 026799999997789999999999999997765321
Q ss_pred -------------HHHHhcCCCeEeecHHHHHHHHHc
Q 003094 757 -------------FDRLKTKDIELQVTERFRERVVEE 780 (848)
Q Consensus 757 -------------~~~~~~~~~~l~i~~~a~~~l~~~ 780 (848)
..........+.+++++++++++.
T Consensus 202 ~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~i~~~ 238 (331)
T 2r44_A 202 FNYQVQKIVSKNDVLEIRNEINKVTISESLEKYIIEL 238 (331)
T ss_dssp CCCCCCCCSCHHHHHHHHHHHHTCBCCHHHHHHHHHH
T ss_pred cchhccccCCHHHHHHHHHHhccCCCCHHHHHHHHHH
Confidence 000111112456899999988763
No 89
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.62 E-value=7.3e-17 Score=195.42 Aligned_cols=199 Identities=20% Similarity=0.323 Sum_probs=148.4
Q ss_pred CCCCCccCChHHHHHHHHHhcc-------------CCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEe
Q 003094 194 GKLDPVVGRQPQIERVVQILGR-------------RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLD 260 (848)
Q Consensus 194 ~~ld~iiG~~~~~~~l~~~l~~-------------~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~ 260 (848)
..+++++|.++.++.|.+.+.. .++.++||+||||||||++|+++|..+. ..++.++
T Consensus 474 v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~----------~~~i~v~ 543 (806)
T 1ypw_A 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ----------ANFISIK 543 (806)
T ss_dssp CSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT----------CCCCCCC
T ss_pred ccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC----------CCEEEEe
Confidence 4688899999999998887642 3567899999999999999999999983 4566777
Q ss_pred CCcccccccccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCCc------hHHHHHHHhhhhc----CCceEEEE
Q 003094 261 MGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEG------AIDAANILKPSLA----RGELQCIG 330 (848)
Q Consensus 261 ~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~~------~~~~~~~L~~~l~----~~~v~vI~ 330 (848)
++.+. .+|.|+.+..+..+|+.++...|+||||||+|.+...+.... ...+.+.|+..++ ...++||+
T Consensus 544 ~~~l~--~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~ 621 (806)
T 1ypw_A 544 GPELL--TMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIG 621 (806)
T ss_dssp CSSST--TCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCCC
T ss_pred chHhh--hhhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEEE
Confidence 77776 568899999999999999988899999999999986643321 2345566666664 45689999
Q ss_pred eeChHHHHhhhhcChhhhc--ccC-CCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCChhh
Q 003094 331 ATTLDEYRKHIEKDPALER--RFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDK 407 (848)
Q Consensus 331 atn~~~~~~~~~~d~al~~--Rf~-~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~p~~ 407 (848)
|||.++ .+|+++.| ||+ .|.|+.|+.+++.+||+.++.+......+ .+..++..+.+|.+ ..
T Consensus 622 tTN~~~-----~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~-----~l~~la~~t~g~sg-----ad 686 (806)
T 1ypw_A 622 ATNRPD-----IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDV-----DLEFLAKMTNGFSG-----AD 686 (806)
T ss_dssp CCBSCG-----GGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC----CC-----CCSCSCGGGSSSCC-----HH
T ss_pred ecCCcc-----cCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCCccc-----CHHHHHHhccccCH-----HH
Confidence 999987 68999999 997 89999999999999999876543222222 23345555555533 35
Q ss_pred HHHHHHHHhhHH
Q 003094 408 AIDLIDEAGSRV 419 (848)
Q Consensus 408 a~~ll~~a~~~~ 419 (848)
...++.+|...+
T Consensus 687 i~~l~~~a~~~a 698 (806)
T 1ypw_A 687 LTEICQRACKLA 698 (806)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 556666665433
No 90
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.62 E-value=4e-15 Score=163.67 Aligned_cols=222 Identities=13% Similarity=0.093 Sum_probs=131.1
Q ss_pred hccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcC----CCCceEEecccccccccc
Q 003094 530 HKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFG----SEEAMIRLDMSEFMERHT 605 (848)
Q Consensus 530 ~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~----~~~~~i~i~~~~~~~~~~ 605 (848)
+++++|++.++..+...... ....++||+||||||||++|+++|+.+.. ...+ ++|........
T Consensus 23 f~~i~G~~~~~~~l~~~~~~---------~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~---~~~~~~~~~~~ 90 (350)
T 1g8p_A 23 FSAIVGQEDMKLALLLTAVD---------PGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCP---VSSPNVEMIPD 90 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHC---------GGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCT---TCCSSGGGSCT
T ss_pred chhccChHHHHHHHHHHhhC---------CCCceEEEECCCCccHHHHHHHHHHhCcccccccccc---ccccccccccc
Confidence 56799999876654332211 11135999999999999999999998732 0122 23332211100
Q ss_pred ------------------------hhcccCCCCCCc--ccccccchhHHHHcCCCeEEEEcCCCcCChHHHHHHHhhhcC
Q 003094 606 ------------------------VSKLIGSPPGYV--GYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILED 659 (848)
Q Consensus 606 ------------------------~~~l~g~~~g~~--g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~~~~~Ll~~le~ 659 (848)
...++|...-.. .........+.+..+.++||||||++.++++.++.|+++|++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~~~~~Ll~~le~ 170 (350)
T 1g8p_A 91 WATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDHIVDLLLDVAQS 170 (350)
T ss_dssp TCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHHHHHHHHHHHHH
T ss_pred hhhhhccccccCCCcccccCCCcchhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCCHHHHHHHHHHHhc
Confidence 011111100000 000000001122334578999999999999999999999998
Q ss_pred cE--EEcCCCceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEc
Q 003094 660 GR--LTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVF 737 (848)
Q Consensus 660 g~--~~~~~g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f 737 (848)
+. +...++......++++|+|+|.... .++++|++||+..+.+
T Consensus 171 ~~~~~~~~g~~~~~~~~~~li~~~n~~~~-----------------------------------~l~~~L~~R~~~~~~l 215 (350)
T 1g8p_A 171 GENVVERDGLSIRHPARFVLVGSGNPEEG-----------------------------------DLRPQLLDRFGLSVEV 215 (350)
T ss_dssp SEEEECCTTCCEEEECCEEEEEEECSCSC-----------------------------------CCCHHHHTTCSEEEEC
T ss_pred CceEEEecceEEeeCCceEEEEEeCCCCC-----------------------------------CCCHHHHhhcceEEEc
Confidence 75 4433333333458899999984221 2679999999888999
Q ss_pred CCCC-HHHHHHHHHHHHHHH-----------------HHH---HhcCCCeEeecHHHHHHHHHccCCCCC-CchHHHHHH
Q 003094 738 RQLT-KLEVKEIADIMLKEV-----------------FDR---LKTKDIELQVTERFRERVVEEGYNPSY-GARPLRRAI 795 (848)
Q Consensus 738 ~~l~-~~el~~I~~~~l~~~-----------------~~~---~~~~~~~l~i~~~a~~~l~~~~~~~~~-g~r~L~~~i 795 (848)
++++ .++..+|+...+... ... .+.....+.++++++++|.+..+.... +.|.+.+.+
T Consensus 216 ~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll 295 (350)
T 1g8p_A 216 LSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALGSDGLRGELTLL 295 (350)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHH
Confidence 9995 555557776643210 011 111123457999999999996443333 456666655
Q ss_pred HHH
Q 003094 796 MRL 798 (848)
Q Consensus 796 ~~~ 798 (848)
+..
T Consensus 296 ~~a 298 (350)
T 1g8p_A 296 RSA 298 (350)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 91
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.62 E-value=1.3e-15 Score=173.80 Aligned_cols=200 Identities=18% Similarity=0.272 Sum_probs=143.0
Q ss_pred hhccccChHHHHHHHHHHHHHHH--------ccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEeccccc
Q 003094 529 LHKRVIGQDEAVKAISRAIRRAR--------VGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEF 600 (848)
Q Consensus 529 l~~~vigq~~~~~~l~~~~~~~~--------~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~ 600 (848)
-++.++|++.+++.|.+.+.... .+.. +..++||+||||||||++|+++|+.+ +.+|+.++|+.+
T Consensus 202 ~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~----~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~vn~~~l 274 (489)
T 3hu3_A 202 GYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVK----PPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEI 274 (489)
T ss_dssp CGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCC----CCCEEEEECSTTSSHHHHHHHHHHHC---SSEEEEEEHHHH
T ss_pred CHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCC----CCCcEEEECcCCCCHHHHHHHHHHHh---CCCEEEEEchHh
Confidence 35679999999999999887541 1222 23469999999999999999999987 789999999887
Q ss_pred ccccchhcccCCCCCCcccccc--cchhHHHHcCCCeEEEEcCCCcCCh-----------HHHHHHHhhhcCcEEEcCCC
Q 003094 601 MERHTVSKLIGSPPGYVGYTEG--GQLTEAVRRRPYTVVLFDEIEKAHP-----------DVFNMMLQILEDGRLTDSKG 667 (848)
Q Consensus 601 ~~~~~~~~l~g~~~g~~g~~~~--~~l~~~~~~~~~~Vl~lDEid~l~~-----------~~~~~Ll~~le~g~~~~~~g 667 (848)
... |.|..+. ..++..+....++||||||||.+.+ .+++.|++.|+...
T Consensus 275 ~~~------------~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~------ 336 (489)
T 3hu3_A 275 MSK------------LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK------ 336 (489)
T ss_dssp HTS------------CTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSC------
T ss_pred hhh------------hcchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccc------
Confidence 532 3333222 3345556666779999999987654 68999999998532
Q ss_pred ceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhh--ccCeEEEcCCCCHHHH
Q 003094 668 RTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLN--RLDEMIVFRQLTKLEV 745 (848)
Q Consensus 668 ~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~--R~d~~i~f~~l~~~el 745 (848)
...+++||+|||.... +++++++ ||+..+.|++++.++.
T Consensus 337 ---~~~~v~vIaaTn~~~~------------------------------------Ld~al~r~gRf~~~i~i~~P~~~eR 377 (489)
T 3hu3_A 337 ---QRAHVIVMAATNRPNS------------------------------------IDPALRRFGRFDREVDIGIPDATGR 377 (489)
T ss_dssp ---TTSCEEEEEEESCGGG------------------------------------BCGGGGSTTSSCEEEECCCCCHHHH
T ss_pred ---cCCceEEEEecCCccc------------------------------------cCHHHhCCCcCceEEEeCCCCHHHH
Confidence 1257899999984432 5678876 9999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHHHHHHHHHH
Q 003094 746 KEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSMA 804 (848)
Q Consensus 746 ~~I~~~~l~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~l~~~l~ 804 (848)
.+|+...+.. ..+. .+..+..++. ....+..++|...+......++.
T Consensus 378 ~~IL~~~~~~---------~~l~-~~~~l~~la~--~t~g~s~~dL~~L~~~A~~~a~r 424 (489)
T 3hu3_A 378 LEILQIHTKN---------MKLA-DDVDLEQVAN--ETHGHVGADLAALCSEAALQAIR 424 (489)
T ss_dssp HHHHHHHTTT---------SCBC-TTCCHHHHHH--TCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc---------CCCc-chhhHHHHHH--HccCCcHHHHHHHHHHHHHHHHH
Confidence 9999766532 1111 1223455666 44556677787777766655544
No 92
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.62 E-value=5.3e-15 Score=157.37 Aligned_cols=200 Identities=25% Similarity=0.328 Sum_probs=139.5
Q ss_pred hcCCCCCccCChHHHHHHHHHhc------------cCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEE
Q 003094 192 EEGKLDPVVGRQPQIERVVQILG------------RRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITL 259 (848)
Q Consensus 192 ~~~~ld~iiG~~~~~~~l~~~l~------------~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~ 259 (848)
.+.++++++|.++.++++.++.. ...+.+++|+||||||||+++++++..+. ..++.+
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~----------~~~i~~ 104 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR----------VPFITA 104 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT----------CCEEEE
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC----------CCEEEe
Confidence 34578999999988777655432 12356699999999999999999999873 346777
Q ss_pred eCCcccccccccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCC------chHHHHHHHhhhhc----CCceEEE
Q 003094 260 DMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAE------GAIDAANILKPSLA----RGELQCI 329 (848)
Q Consensus 260 ~~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~------~~~~~~~~L~~~l~----~~~v~vI 329 (848)
+...+. ..+.+.....+..+++.+....+.++|+||+|.+....... ......+.+...+. ...++++
T Consensus 105 ~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~ 182 (278)
T 1iy2_A 105 SGSDFV--EMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVM 182 (278)
T ss_dssp EHHHHH--HSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEE
T ss_pred cHHHHH--HHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEE
Confidence 766554 23456667778888998887778999999999986543210 11223333433343 2347888
Q ss_pred EeeChHHHHhhhhcChhhhc--ccC-CCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChH-HHHHHHhhhhcccccCCCh
Q 003094 330 GATTLDEYRKHIEKDPALER--RFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDE-ALVSAAQLSYQYISDRFLP 405 (848)
Q Consensus 330 ~atn~~~~~~~~~~d~al~~--Rf~-~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~-~l~~l~~~s~~~~~~~~~p 405 (848)
++|+.++ .+|+++.| ||. .|.|+.|+.++|.+||+.+.+ ...++++ .+..++..+.++.+
T Consensus 183 a~t~~p~-----~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~------~~~~~~~~~~~~la~~~~G~~~----- 246 (278)
T 1iy2_A 183 AATNRPD-----ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR------GKPLAEDVDLALLAKRTPGFVG----- 246 (278)
T ss_dssp EEESCTT-----SSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHT------TSCBCTTCCHHHHHHTCTTCCH-----
T ss_pred EecCCch-----hCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHc------cCCCCcccCHHHHHHHcCCCCH-----
Confidence 8999887 58999998 786 799999999999999987654 2334433 36677777777653
Q ss_pred hhHHHHHHHHhhHH
Q 003094 406 DKAIDLIDEAGSRV 419 (848)
Q Consensus 406 ~~a~~ll~~a~~~~ 419 (848)
++...++..|...+
T Consensus 247 ~dl~~l~~~a~~~a 260 (278)
T 1iy2_A 247 ADLENLLNEAALLA 260 (278)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34566666665443
No 93
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.62 E-value=5.1e-15 Score=161.65 Aligned_cols=169 Identities=15% Similarity=0.152 Sum_probs=118.4
Q ss_pred hhhhhhhhhhcCCCCCccCChHHHHHHHHHhccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCC
Q 003094 183 YGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMG 262 (848)
Q Consensus 183 ~~~~l~~~~~~~~ld~iiG~~~~~~~l~~~l~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~ 262 (848)
|..++.+++++..+++++|+++.++.+...+.. ..++||+||||||||++|+++++.+ +.+++.+++.
T Consensus 13 ~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~l~~--~~~vll~G~pGtGKT~la~~la~~~----------~~~~~~i~~~ 80 (331)
T 2r44_A 13 YYRNKIKEVIDEVGKVVVGQKYMINRLLIGICT--GGHILLEGVPGLAKTLSVNTLAKTM----------DLDFHRIQFT 80 (331)
T ss_dssp HHHHHHHHHHHHHTTTCCSCHHHHHHHHHHHHH--TCCEEEESCCCHHHHHHHHHHHHHT----------TCCEEEEECC
T ss_pred HHHHHHHHHHHHhccceeCcHHHHHHHHHHHHc--CCeEEEECCCCCcHHHHHHHHHHHh----------CCCeEEEecC
Confidence 556788888998899999999999998887765 4699999999999999999999988 3456666653
Q ss_pred cccccccccchHHHH-HHHHHHHHHhCC---CeEEEEcccchhhhCCCCCchHHHHHHHhhhhcC-------------Cc
Q 003094 263 LLVAGTKYRGEFEER-LKKLMEEIKQSD---EIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR-------------GE 325 (848)
Q Consensus 263 ~l~~~~~~~g~~~~~-l~~l~~~~~~~~---~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~-------------~~ 325 (848)
.........|..... -...+ ....+ ..||||||+|.+. .+.++.|...++. ..
T Consensus 81 ~~~~~~~l~g~~~~~~~~~~~--~~~~g~l~~~vl~iDEi~~~~--------~~~~~~Ll~~l~~~~~~~~g~~~~~~~~ 150 (331)
T 2r44_A 81 PDLLPSDLIGTMIYNQHKGNF--EVKKGPVFSNFILADEVNRSP--------AKVQSALLECMQEKQVTIGDTTYPLDNP 150 (331)
T ss_dssp TTCCHHHHHEEEEEETTTTEE--EEEECTTCSSEEEEETGGGSC--------HHHHHHHHHHHHHSEEEETTEEEECCSS
T ss_pred CCCChhhcCCceeecCCCCce--EeccCcccccEEEEEccccCC--------HHHHHHHHHHHhcCceeeCCEEEECCCC
Confidence 211100000000000 00000 00011 2599999999984 3466777776653 24
Q ss_pred eEEEEeeChHHHHhhhhcChhhhcccC-CCcCCCCCHHHHHHHHHHHHH
Q 003094 326 LQCIGATTLDEYRKHIEKDPALERRFQ-PVKVPEPSVDETIQILKGLRE 373 (848)
Q Consensus 326 v~vI~atn~~~~~~~~~~d~al~~Rf~-~i~~~~p~~~e~~~Il~~~~~ 373 (848)
+++|+++|+.++.....+++++.+||. .+.++.|+.+++.+|++....
T Consensus 151 ~~viat~np~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~ 199 (331)
T 2r44_A 151 FLVLATQNPVEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSN 199 (331)
T ss_dssp CEEEEEECTTCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHC
T ss_pred EEEEEecCCCcccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccc
Confidence 788888887664333458999999998 699999999999999987664
No 94
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.61 E-value=8.3e-15 Score=151.58 Aligned_cols=200 Identities=21% Similarity=0.200 Sum_probs=144.9
Q ss_pred hhhhhhhcCCCCCccCChHHHHHHHHHhccCCCC-CcEEECCCCCcHHHHHHHHHHHhhCCCCCCCC-------------
Q 003094 186 NLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKN-NPCLIGEPGVGKTAIAEGLAQRIASGDVPDTI------------- 251 (848)
Q Consensus 186 ~l~~~~~~~~ld~iiG~~~~~~~l~~~l~~~~~~-~iLL~GppGtGKT~la~~la~~l~~~~~~~~l------------- 251 (848)
.|.++++|..+++++|++++++.+...+...... .++|+||||+|||++++.+++.+.........
T Consensus 12 ~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (250)
T 1njg_A 12 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQ 91 (250)
T ss_dssp CHHHHTCCCSGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHT
T ss_pred HHhhccCCccHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhc
Confidence 4778889999999999999999999988765544 57899999999999999999988643211000
Q ss_pred -CCceEEEEeCCcccccccccchHHHHHHHHHHHHH----hCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcC--C
Q 003094 252 -EGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIK----QSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR--G 324 (848)
Q Consensus 252 -~~~~v~~~~~~~l~~~~~~~g~~~~~l~~l~~~~~----~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~--~ 324 (848)
....++.++... ......+..++..+. ...+.+|||||+|.+. .+..+.|...++. .
T Consensus 92 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~--------~~~~~~l~~~l~~~~~ 155 (250)
T 1njg_A 92 GRFVDLIEIDAAS--------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS--------RHSFNALLKTLEEPPE 155 (250)
T ss_dssp TCCSSEEEEETTC--------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSC--------HHHHHHHHHHHHSCCT
T ss_pred cCCcceEEecCcc--------cccHHHHHHHHHHhhhchhcCCceEEEEECccccc--------HHHHHHHHHHHhcCCC
Confidence 001233333221 112233444554432 2357899999999983 3356667776653 5
Q ss_pred ceEEEEeeChHHHHhhhhcChhhhcccCCCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCC
Q 003094 325 ELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFL 404 (848)
Q Consensus 325 ~v~vI~atn~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~ 404 (848)
.+.+|++|+... .+++.+.+|+..+.+++|+.++..+++...+.+ .+..++++++..+++.+.|.
T Consensus 156 ~~~~i~~t~~~~-----~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~----~~~~~~~~~~~~l~~~~~G~------ 220 (250)
T 1njg_A 156 HVKFLLATTDPQ-----KLPVTILSRCLQFHLKALDVEQIRHQLEHILNE----EHIAHEPRALQLLARAAEGS------ 220 (250)
T ss_dssp TEEEEEEESCGG-----GSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHH----TTCCBCHHHHHHHHHHHTTC------
T ss_pred ceEEEEEeCChH-----hCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHHcCCC------
Confidence 688888888765 578999999989999999999999999887763 46678899999999887663
Q ss_pred hhhHHHHHHHHh
Q 003094 405 PDKAIDLIDEAG 416 (848)
Q Consensus 405 p~~a~~ll~~a~ 416 (848)
|..+..+++.+.
T Consensus 221 ~~~~~~~~~~~~ 232 (250)
T 1njg_A 221 LRDALSLTDQAI 232 (250)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 566777777664
No 95
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.61 E-value=7e-14 Score=184.33 Aligned_cols=360 Identities=17% Similarity=0.207 Sum_probs=197.8
Q ss_pred CCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccccccccchHHHHHHHHHHHHHhCCCeEEEEc
Q 003094 217 TKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFID 296 (848)
Q Consensus 217 ~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~IL~ID 296 (848)
...+.++.||+|||||++++.+|+.+ |.+++.++|+.-... ..+..++..+... +.++++|
T Consensus 644 ~~~~~~l~GpaGtGKTe~vk~LA~~l----------g~~~v~~nc~e~ld~--------~~lg~~~~g~~~~-Gaw~~~D 704 (2695)
T 4akg_A 644 QKYGGCFFGPAGTGKTETVKAFGQNL----------GRVVVVFNCDDSFDY--------QVLSRLLVGITQI-GAWGCFD 704 (2695)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHTT----------TCCCEEEETTSSCCH--------HHHHHHHHHHHHH-TCEEEEE
T ss_pred hCCCCcccCCCCCCcHHHHHHHHHHh----------CCcEEEEECCCCCCh--------hHhhHHHHHHHhc-CCEeeeh
Confidence 34678999999999999999999998 778999999865532 2345566555544 3699999
Q ss_pred ccchhhhCCCCCchHHHHHHH-------hhhhc---------------CCceEEEEeeChHHHHhhhhcChhhhcccCCC
Q 003094 297 EVHTLIGAGAAEGAIDAANIL-------KPSLA---------------RGELQCIGATTLDEYRKHIEKDPALERRFQPV 354 (848)
Q Consensus 297 Eid~l~~~~~~~~~~~~~~~L-------~~~l~---------------~~~v~vI~atn~~~~~~~~~~d~al~~Rf~~i 354 (848)
|++++-+ ++...+ ...+. ...+.+++|+|+ .|.+..++++++++||..|
T Consensus 705 E~nr~~~--------evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NP-gy~g~~eLP~~Lk~~Fr~v 775 (2695)
T 4akg_A 705 EFNRLDE--------KVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNP-GYNGRSELPENLKKSFREF 775 (2695)
T ss_dssp TTTSSCH--------HHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECC-CSSSSCCCCHHHHTTEEEE
T ss_pred hhhhcCh--------HHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCC-CccCcccccHHHHhheEEE
Confidence 9999743 233333 11111 234678888887 4666778999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHH---hhhhccccc----CCChhhHHHHHHHHhhHHHHhhcCCc
Q 003094 355 KVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAA---QLSYQYISD----RFLPDKAIDLIDEAGSRVRLRHAQLP 427 (848)
Q Consensus 355 ~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~---~~s~~~~~~----~~~p~~a~~ll~~a~~~~~~~~~~~~ 427 (848)
.+..|+.+...+|+.... ++......-..++ ++....... .+-.+....+|..|+...+.. ..
T Consensus 776 ~m~~Pd~~~i~ei~l~s~-------Gf~~a~~la~kiv~~~~l~~e~ls~q~hydfglRalksvL~~ag~lkr~~---~~ 845 (2695)
T 4akg_A 776 SMKSPQSGTIAEMILQIM-------GFEDSKSLASKIVHFLELLSSKCSSMNHYHFGLRTLKGVLRNCSPLISEF---GE 845 (2695)
T ss_dssp ECCCCCHHHHHHHHHHHH-------HCSSHHHHHHHHHHHHHHHHHHSCCCTTCCCSHHHHHHHHHHHHHHHHHS---CS
T ss_pred EeeCCCHHHHHHHHHHhc-------CCCchHHHHHHHHHHHHHHHHHhCcCCcccccHHHHHHHHHHHHHhhccC---Cc
Confidence 999999998888754211 2211221111111 111111111 111223334444333222111 00
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCCCCccCHHHHH---HHHH
Q 003094 428 EEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQ---HIVS 504 (848)
Q Consensus 428 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~di~---~~~~ 504 (848)
++ .- +....++. ..+.+..+|+. .++.
T Consensus 846 e~-~~----------------------------------------l~~al~~~---------~lpk~~~~D~~lf~~li~ 875 (2695)
T 4akg_A 846 GE-KT----------------------------------------VVESLKRV---------ILPSLGDTDELVFKDELS 875 (2695)
T ss_dssp SH-HH----------------------------------------HHHHHHHH---------TGGGCCHHHHHHHHHHHH
T ss_pred HH-HH----------------------------------------HHHHHHHh---------ccccCchhhHHHHHHHHH
Confidence 00 00 00000000 01112223322 2222
Q ss_pred Hhh-CCCCcccCcchHHHHHHHHHHh-hccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHH
Q 003094 505 AWT-GIPVEKVSTDESDRLLKMEETL-HKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALA 582 (848)
Q Consensus 505 ~~~-g~p~~~~~~~~~~~l~~l~~~l-~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la 582 (848)
... +.... ....+ ....+.+.. ...+.-.+..+..+.+..+..... .+++++||||+|||++.+.+|
T Consensus 876 dlFp~~~~~-~~~~~--l~~~i~~~~~~~~l~~~~~~~~K~~ql~e~~~~r--------~gvmlvGptgsGKTt~~~~La 944 (2695)
T 4akg_A 876 KIFDSAGTP-LNSKA--IVQCLKDAGQRSGFSMSEEFLKKCMQFYYMQKTQ--------QALILVGKAGCGKTATWKTVI 944 (2695)
T ss_dssp HHCCCCSCC-SSSSH--HHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHC--------SEEEEECSTTSSHHHHHHHHH
T ss_pred HhCCCCCCC-CChHH--HHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHhc--------ceEEEECCCCCCHHHHHHHHH
Confidence 221 11111 11111 111122222 123344445555555544443321 359999999999999999999
Q ss_pred HHhc---CCCCceEEecccccccccchhcccCCCCCCcccccccchhHHHHcC----------CCeEEEEcCCCcCChHH
Q 003094 583 AYYF---GSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRR----------PYTVVLFDEIEKAHPDV 649 (848)
Q Consensus 583 ~~l~---~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~----------~~~Vl~lDEid~l~~~~ 649 (848)
+.+. +.......+|...+ +..+|+|.-....+.=..|.+...+|+. .+.+|+|| .-+++..
T Consensus 945 ~al~~l~~~~~~~~~inpk~~----t~~el~G~~d~~t~eW~DGils~~~R~~~~~~~~~~~~~~~WivfD--G~vD~~W 1018 (2695)
T 4akg_A 945 DAMAIFDGHANVVYVIDTKVL----TKESLYGSMLKATLEWRDGLFTSILRRVNDDITGTFKNSRIWVVFD--SDLDPEY 1018 (2695)
T ss_dssp HHHHHHTCCEEEEEEECTTTS----CHHHHTTEECTTTCCEECCSHHHHHHHHHTCCCSSCSSEEEEEEEC--SCCCHHH
T ss_pred HHHHHhcCCCceEEEeCCCCC----CHHHhcceecCCCCeEecChHHHHHHHHHhccccccCCCCeEEEEC--CCCCHHH
Confidence 8863 22233444553332 3446777522111111225666666641 14599999 7788999
Q ss_pred HHHHHhhhcC-cEEEcCCCceeecC-CeEEEEec
Q 003094 650 FNMMLQILED-GRLTDSKGRTVDFK-NTLLIMTS 681 (848)
Q Consensus 650 ~~~Ll~~le~-g~~~~~~g~~v~~~-~~iiI~ts 681 (848)
.+.|..+||+ ..++-..|.++..+ ++.+|+-+
T Consensus 1019 IE~LNsVLDDNk~L~L~ngErI~l~~~~~llFEv 1052 (2695)
T 4akg_A 1019 VEAMNSVLDDNKILTLPNGERLPIPPNFRILFET 1052 (2695)
T ss_dssp HHTTHHHHSTTCEEECSSSCEEECCSSCEEEEEE
T ss_pred HHHHHHHhcCCCccccCCCCEEecCCCcEEEEEe
Confidence 9999999986 55777778777764 66666654
No 96
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.61 E-value=6.4e-16 Score=178.79 Aligned_cols=198 Identities=17% Similarity=0.214 Sum_probs=140.6
Q ss_pred hhhhhhhhcCCCCCccCChHHHHHHHHHhcc-----------------CCCCCcEEECCCCCcHHHHHHHHHHHhhCCCC
Q 003094 185 TNLTKLAEEGKLDPVVGRQPQIERVVQILGR-----------------RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDV 247 (848)
Q Consensus 185 ~~l~~~~~~~~ld~iiG~~~~~~~l~~~l~~-----------------~~~~~iLL~GppGtGKT~la~~la~~l~~~~~ 247 (848)
..|+++++|.++++++|+++.++.|.+.+.. +..+++||+||||||||++|+++|+.+
T Consensus 27 ~lW~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l----- 101 (516)
T 1sxj_A 27 KLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL----- 101 (516)
T ss_dssp CCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT-----
T ss_pred CCcccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc-----
Confidence 4699999999999999999999999988764 245789999999999999999999998
Q ss_pred CCCCCCceEEEEeCCcccccccccchHHHH---------HHHHHHHH-----HhCCCeEEEEcccchhhhCCCCCchHHH
Q 003094 248 PDTIEGKKVITLDMGLLVAGTKYRGEFEER---------LKKLMEEI-----KQSDEIILFIDEVHTLIGAGAAEGAIDA 313 (848)
Q Consensus 248 ~~~l~~~~v~~~~~~~l~~~~~~~g~~~~~---------l~~l~~~~-----~~~~~~IL~IDEid~l~~~~~~~~~~~~ 313 (848)
+.++++++++...... ..... +..++..+ ....+.||||||+|.+.... ...
T Consensus 102 -----~~~~i~in~s~~~~~~----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~-----~~~ 167 (516)
T 1sxj_A 102 -----GYDILEQNASDVRSKT----LLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGD-----RGG 167 (516)
T ss_dssp -----TCEEEEECTTSCCCHH----HHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTS-----TTH
T ss_pred -----CCCEEEEeCCCcchHH----HHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhh-----HHH
Confidence 5778999887654211 00000 11111111 12457899999999996431 223
Q ss_pred HHHHhhhhcCCceEEEEeeChHHHHhhhhcChhhhcccCCCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHh
Q 003094 314 ANILKPSLARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQ 393 (848)
Q Consensus 314 ~~~L~~~l~~~~v~vI~atn~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~ 393 (848)
.+.|..+++..+..+|++++.... ..-+.+.+|+..+.|++|+.+++.+++...+.+ .++.++++++..+++
T Consensus 168 l~~L~~~l~~~~~~iIli~~~~~~----~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~----~~~~i~~~~l~~la~ 239 (516)
T 1sxj_A 168 VGQLAQFCRKTSTPLILICNERNL----PKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIR----EKFKLDPNVIDRLIQ 239 (516)
T ss_dssp HHHHHHHHHHCSSCEEEEESCTTS----STTGGGTTTSEEEECCCCCHHHHHHHHHHHHHH----HTCCCCTTHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEEcCCCC----ccchhhHhceEEEEeCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHH
Confidence 566667766555555555554321 122457777789999999999999999877663 467789999999998
Q ss_pred hhhcccccCCChhhHHHHHHHH
Q 003094 394 LSYQYISDRFLPDKAIDLIDEA 415 (848)
Q Consensus 394 ~s~~~~~~~~~p~~a~~ll~~a 415 (848)
.+.|.+ +.++.++..+
T Consensus 240 ~s~Gdi------R~~i~~L~~~ 255 (516)
T 1sxj_A 240 TTRGDI------RQVINLLSTI 255 (516)
T ss_dssp HTTTCH------HHHHHHHTHH
T ss_pred HcCCcH------HHHHHHHHHH
Confidence 876543 3466666544
No 97
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.61 E-value=1.9e-14 Score=159.70 Aligned_cols=200 Identities=20% Similarity=0.188 Sum_probs=148.1
Q ss_pred hhhhhhhcCCCCCccCChHHHHHHHHHhccCCCCC-cEEECCCCCcHHHHHHHHHHHhhCCCCCCC--------------
Q 003094 186 NLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNN-PCLIGEPGVGKTAIAEGLAQRIASGDVPDT-------------- 250 (848)
Q Consensus 186 ~l~~~~~~~~ld~iiG~~~~~~~l~~~l~~~~~~~-iLL~GppGtGKT~la~~la~~l~~~~~~~~-------------- 250 (848)
.|.++++|..+++++|++..++.+...+......+ ++|+||+|+|||++++.+++.+........
T Consensus 5 ~l~~k~rp~~~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 84 (373)
T 1jr3_A 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQ 84 (373)
T ss_dssp CHHHHTCCCSTTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHT
T ss_pred HHHHhhCCCchhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhc
Confidence 57889999999999999999999999887766555 689999999999999999999865321100
Q ss_pred CCCceEEEEeCCcccccccccchHHHHHHHHHHHHH----hCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcC--C
Q 003094 251 IEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIK----QSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR--G 324 (848)
Q Consensus 251 l~~~~v~~~~~~~l~~~~~~~g~~~~~l~~l~~~~~----~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~--~ 324 (848)
.....++.++..... ... .++.+++.+. .+++.|+||||+|.+. ....+.|...++. .
T Consensus 85 ~~~~~~~~~~~~~~~----~~~----~~~~l~~~~~~~~~~~~~~vliiDe~~~l~--------~~~~~~Ll~~le~~~~ 148 (373)
T 1jr3_A 85 GRFVDLIEIDAASRT----KVE----DTRDLLDNVQYAPARGRFKVYLIDEVHMLS--------RHSFNALLKTLEEPPE 148 (373)
T ss_dssp SCCSSCEEEETTCSC----CSS----CHHHHHHHTTSCCSSSSSEEEEEECGGGSC--------HHHHHHHHHHHHSCCS
T ss_pred cCCCceEEecccccC----CHH----HHHHHHHHHhhccccCCeEEEEEECcchhc--------HHHHHHHHHHHhcCCC
Confidence 001134444433211 111 2444555544 2446899999999984 3356777777764 5
Q ss_pred ceEEEEeeChHHHHhhhhcChhhhcccCCCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCC
Q 003094 325 ELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFL 404 (848)
Q Consensus 325 ~v~vI~atn~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~ 404 (848)
.+.+|++|+... .+.+.+.+|+..+.|++|+.++..+++...+.+ .++.++++++..++..+.|.
T Consensus 149 ~~~~Il~~~~~~-----~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~----~~~~~~~~a~~~l~~~~~G~------ 213 (373)
T 1jr3_A 149 HVKFLLATTDPQ-----KLPVTILSRCLQFHLKALDVEQIRHQLEHILNE----EHIAHEPRALQLLARAAEGS------ 213 (373)
T ss_dssp SEEEEEEESCGG-----GSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHH----HTCCBCHHHHHHHHHHSSSC------
T ss_pred ceEEEEEeCChH-----hCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHCCCC------
Confidence 688888888765 578999999999999999999999999887764 46788999999999887664
Q ss_pred hhhHHHHHHHHh
Q 003094 405 PDKAIDLIDEAG 416 (848)
Q Consensus 405 p~~a~~ll~~a~ 416 (848)
+..+..+++.+.
T Consensus 214 ~r~~~~~l~~~~ 225 (373)
T 1jr3_A 214 LRDALSLTDQAI 225 (373)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 556777777764
No 98
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.61 E-value=5.9e-14 Score=153.26 Aligned_cols=193 Identities=22% Similarity=0.293 Sum_probs=136.1
Q ss_pred hhhhhhhcCCCCCccCChHHHHHHHHHhcc-----CCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEe
Q 003094 186 NLTKLAEEGKLDPVVGRQPQIERVVQILGR-----RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLD 260 (848)
Q Consensus 186 ~l~~~~~~~~ld~iiG~~~~~~~l~~~l~~-----~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~ 260 (848)
.|.+..++..++.++|++..++.+...+.. ....+++|+||||+||||+++.++..+. .++...+
T Consensus 14 ~~~~~lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~----------~~~~~~s 83 (334)
T 1in4_A 14 SGVQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQ----------TNIHVTS 83 (334)
T ss_dssp ---CTTSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHT----------CCEEEEE
T ss_pred HHHHHcCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhC----------CCEEEEe
Confidence 467888999999999999988887766643 3457899999999999999999999983 3344444
Q ss_pred CCcccccccccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcC-----------------
Q 003094 261 MGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR----------------- 323 (848)
Q Consensus 261 ~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~----------------- 323 (848)
...+..+ ..+..++... ....|+||||+|.+.+ ...+.|...++.
T Consensus 84 g~~~~~~--------~~l~~~~~~~--~~~~v~~iDE~~~l~~--------~~~e~L~~~~~~~~~~i~~~~~~~~~~i~ 145 (334)
T 1in4_A 84 GPVLVKQ--------GDMAAILTSL--ERGDVLFIDEIHRLNK--------AVEELLYSAIEDFQIDIMIGKGPSAKSIR 145 (334)
T ss_dssp TTTCCSH--------HHHHHHHHHC--CTTCEEEEETGGGCCH--------HHHHHHHHHHHTSCCCC------------
T ss_pred chHhcCH--------HHHHHHHHHc--cCCCEEEEcchhhcCH--------HHHHHHHHHHHhcccceeeccCccccccc
Confidence 3322211 1122232221 2356999999999853 234444433321
Q ss_pred ---CceEEEEeeChHHHHhhhhcChhhhcccC-CCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhccc
Q 003094 324 ---GELQCIGATTLDEYRKHIEKDPALERRFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYI 399 (848)
Q Consensus 324 ---~~v~vI~atn~~~~~~~~~~d~al~~Rf~-~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~ 399 (848)
..+.++++++.+. .+++++++||. .+.+++|+.+++.+|++..... .++.++++++..++..+.+.
T Consensus 146 ~~l~~~~li~at~~~~-----~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~----~~~~~~~~~~~~ia~~~~G~- 215 (334)
T 1in4_A 146 IDIQPFTLVGATTRSG-----LLSSPLRSRFGIILELDFYTVKELKEIIKRAASL----MDVEIEDAAAEMIAKRSRGT- 215 (334)
T ss_dssp ---CCCEEEEEESCGG-----GSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHH----TTCCBCHHHHHHHHHTSTTC-
T ss_pred ccCCCeEEEEecCCcc-----cCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHH----cCCCcCHHHHHHHHHhcCCC-
Confidence 1367788888776 68999999997 6789999999999999987763 45678899999988876553
Q ss_pred ccCCChhhHHHHHHHHhhHHHH
Q 003094 400 SDRFLPDKAIDLIDEAGSRVRL 421 (848)
Q Consensus 400 ~~~~~p~~a~~ll~~a~~~~~~ 421 (848)
|+.+..+++.+...+..
T Consensus 216 -----~R~a~~ll~~~~~~a~~ 232 (334)
T 1in4_A 216 -----PRIAIRLTKRVRDMLTV 232 (334)
T ss_dssp -----HHHHHHHHHHHHHHHHH
T ss_pred -----hHHHHHHHHHHHHHHHH
Confidence 56788888877654443
No 99
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.60 E-value=1.4e-15 Score=179.24 Aligned_cols=228 Identities=18% Similarity=0.169 Sum_probs=142.7
Q ss_pred HHHHhhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccc---
Q 003094 525 MEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFM--- 601 (848)
Q Consensus 525 l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~--- 601 (848)
+++..++.++||+.+++.+...+... .+++|+||||||||++|++||..+.......+.+++....
T Consensus 35 ~rp~~l~~i~G~~~~l~~l~~~i~~g-----------~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~ 103 (604)
T 3k1j_A 35 VPEKLIDQVIGQEHAVEVIKTAANQK-----------RHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENM 103 (604)
T ss_dssp CCSSHHHHCCSCHHHHHHHHHHHHTT-----------CCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTS
T ss_pred ccccccceEECchhhHhhccccccCC-----------CEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccC
Confidence 34455678999999998888777632 2599999999999999999999874433222222221110
Q ss_pred -----------------------------------------------------------cccchhcccCCCC---CCccc
Q 003094 602 -----------------------------------------------------------ERHTVSKLIGSPP---GYVGY 619 (848)
Q Consensus 602 -----------------------------------------------------------~~~~~~~l~g~~~---g~~g~ 619 (848)
.......|+|... ...|.
T Consensus 104 p~i~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~~g~ 183 (604)
T 3k1j_A 104 PRIKTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQSGG 183 (604)
T ss_dssp CEEEEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC----
T ss_pred CcEEEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhhcCC
Confidence 0111222333210 00010
Q ss_pred c----cccchhHHHHcCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCC----------ceeecCCeEEEEecCCCc
Q 003094 620 T----EGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKG----------RTVDFKNTLLIMTSNVGS 685 (848)
Q Consensus 620 ~----~~~~l~~~~~~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g----------~~v~~~~~iiI~tsN~~~ 685 (848)
. ....-...+..+.+++|||||++.+++.+|+.|+++|+++.+...++ ......+++||++||..
T Consensus 184 ~~~g~~~~i~~g~~~~a~~gvL~LDEi~~l~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~- 262 (604)
T 3k1j_A 184 LGTPAHERVEPGMIHRAHKGVLFIDEIATLSLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLD- 262 (604)
T ss_dssp CCCCGGGGEECCHHHHTTTSEEEETTGGGSCHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHH-
T ss_pred ccccccccccCceeeecCCCEEEEechhhCCHHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHH-
Confidence 0 00112234556778999999999999999999999999999875433 22234588999999821
Q ss_pred hhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccC---eEEEcCCCCHHHHHHHHHHHHHHHHHHHhc
Q 003094 686 SVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLD---EMIVFRQLTKLEVKEIADIMLKEVFDRLKT 762 (848)
Q Consensus 686 ~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d---~~i~f~~l~~~el~~I~~~~l~~~~~~~~~ 762 (848)
+...|+|+|++||+ ..+.|++..++. ...+..++..+.+.+..
T Consensus 263 ---------------------------------~~~~l~~~l~~R~~v~~i~i~l~~~~~~~-~~~~~~~l~~~~~~~~~ 308 (604)
T 3k1j_A 263 ---------------------------------TVDKMHPALRSRIRGYGYEVYMRTTMPDT-IENRRKLVQFVAQEVKR 308 (604)
T ss_dssp ---------------------------------HHHHSCHHHHHHHHHHSEEEECCSEEECC-HHHHHHHHHHHHHHHHH
T ss_pred ---------------------------------HHhhcCHHHHHHhhccceEeeccccccCC-HHHHHHHHHHHHHHHhh
Confidence 12348899999996 457776653322 22333334444444433
Q ss_pred CCCeEeecHHHHHHHHHccCCCCC-------CchHHHHHHHHH
Q 003094 763 KDIELQVTERFRERVVEEGYNPSY-------GARPLRRAIMRL 798 (848)
Q Consensus 763 ~~~~l~i~~~a~~~l~~~~~~~~~-------g~r~L~~~i~~~ 798 (848)
.+....++++++..|..+.+.+.. +.|++.+.++..
T Consensus 309 ~~~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A 351 (604)
T 3k1j_A 309 DGKIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAA 351 (604)
T ss_dssp HCSSCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHHH
T ss_pred ccCcccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHHHH
Confidence 334457999999999986443333 467777777654
No 100
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.59 E-value=1.4e-14 Score=147.86 Aligned_cols=189 Identities=23% Similarity=0.316 Sum_probs=132.9
Q ss_pred HHhhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCC--CCceEEeccccccccc
Q 003094 527 ETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGS--EEAMIRLDMSEFMERH 604 (848)
Q Consensus 527 ~~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~--~~~~i~i~~~~~~~~~ 604 (848)
+..+.+++|++..++.+...+... + ..+++|+||+|||||++++.+++.+... ...++.++++......
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~~~--------~-~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (226)
T 2chg_A 13 PRTLDEVVGQDEVIQRLKGYVERK--------N-IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGID 83 (226)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTT--------C-CCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHH
T ss_pred CCCHHHHcCcHHHHHHHHHHHhCC--------C-CCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChH
Confidence 344667999999999988887632 1 1248999999999999999999986332 2446666665432211
Q ss_pred chhcccCCCCCCcccccccchhHHHH-----cCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecCCeEEEE
Q 003094 605 TVSKLIGSPPGYVGYTEGGQLTEAVR-----RRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIM 679 (848)
Q Consensus 605 ~~~~l~g~~~g~~g~~~~~~l~~~~~-----~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~ 679 (848)
... ..+..... ...+.||||||++.+++..++.|++++++. ..++++|+
T Consensus 84 ~~~---------------~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~-----------~~~~~~i~ 137 (226)
T 2chg_A 84 VVR---------------HKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMY-----------SKSCRFIL 137 (226)
T ss_dssp HHH---------------HHHHHHHTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHT-----------TTTEEEEE
T ss_pred HHH---------------HHHHHHhcccCCCccCceEEEEeChhhcCHHHHHHHHHHHHhc-----------CCCCeEEE
Confidence 111 11111111 245789999999999999999999999863 24678888
Q ss_pred ecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHHHHHHHHHHH
Q 003094 680 TSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDR 759 (848)
Q Consensus 680 tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~~~l~~~~~~ 759 (848)
++|... .+.+.+.+|+ ..+.|+|++.+++.+++...+...
T Consensus 138 ~~~~~~------------------------------------~~~~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~~--- 177 (226)
T 2chg_A 138 SCNYVS------------------------------------RIIEPIQSRC-AVFRFKPVPKEAMKKRLLEICEKE--- 177 (226)
T ss_dssp EESCGG------------------------------------GSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHH---
T ss_pred EeCChh------------------------------------hcCHHHHHhC-ceeecCCCCHHHHHHHHHHHHHHc---
Confidence 887332 2568899999 599999999999999887766431
Q ss_pred HhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHHHHH
Q 003094 760 LKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLL 799 (848)
Q Consensus 760 ~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~l 799 (848)
+ +.+++++++.|... +.++.|.+.+.++...
T Consensus 178 ----~--~~~~~~~~~~l~~~---~~g~~r~l~~~l~~~~ 208 (226)
T 2chg_A 178 ----G--VKITEDGLEALIYI---SGGDFRKAINALQGAA 208 (226)
T ss_dssp ----T--CCBCHHHHHHHHHH---HTTCHHHHHHHHHHHH
T ss_pred ----C--CCCCHHHHHHHHHH---cCCCHHHHHHHHHHHH
Confidence 2 23889999998874 2356676766666554
No 101
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.59 E-value=7.7e-15 Score=160.87 Aligned_cols=196 Identities=16% Similarity=0.224 Sum_probs=147.9
Q ss_pred hhhhhhhhhcCCCCCccCChHHHHHHHHHhccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCc
Q 003094 184 GTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGL 263 (848)
Q Consensus 184 ~~~l~~~~~~~~ld~iiG~~~~~~~l~~~l~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~ 263 (848)
..+|.++++|..|++++|++..++.|...+.....+|++|+||||||||++++++++.+..... ...+..++.+.
T Consensus 12 ~~~~~~k~rp~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~-----~~~~~~~~~~~ 86 (340)
T 1sxj_C 12 NLPWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY-----SNMVLELNASD 86 (340)
T ss_dssp CCCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH-----HHHEEEECTTS
T ss_pred CCchHHHhCCCcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCc-----cceEEEEcCcc
Confidence 3479999999999999999999999999998887788999999999999999999999864211 23456666543
Q ss_pred ccccccccchHHHHHHHHHHHHHh------CCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhc--CCceEEEEeeChH
Q 003094 264 LVAGTKYRGEFEERLKKLMEEIKQ------SDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLA--RGELQCIGATTLD 335 (848)
Q Consensus 264 l~~~~~~~g~~~~~l~~l~~~~~~------~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~--~~~v~vI~atn~~ 335 (848)
.. + ...++..+..... .+..|++|||+|.+. .+.++.|+.+++ .....+|+++|..
T Consensus 87 ~~------~--~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~--------~~~~~~L~~~le~~~~~~~~il~~n~~ 150 (340)
T 1sxj_C 87 DR------G--IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMT--------NAAQNALRRVIERYTKNTRFCVLANYA 150 (340)
T ss_dssp CC------S--HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSC--------HHHHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred cc------c--HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCC--------HHHHHHHHHHHhcCCCCeEEEEEecCc
Confidence 21 1 1223333333321 236799999999984 346777888776 3457778888876
Q ss_pred HHHhhhhcChhhhcccCCCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCChhhHHHHHHHH
Q 003094 336 EYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEA 415 (848)
Q Consensus 336 ~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~p~~a~~ll~~a 415 (848)
. .+.+++.+||..+.|++++.++..+++...++ ..++.++++++..++..+.|. .++++.+++.+
T Consensus 151 ~-----~i~~~i~sR~~~~~~~~l~~~~~~~~l~~~~~----~~~~~i~~~~~~~i~~~s~G~------~r~~~~~l~~~ 215 (340)
T 1sxj_C 151 H-----KLTPALLSQCTRFRFQPLPQEAIERRIANVLV----HEKLKLSPNAEKALIELSNGD------MRRVLNVLQSC 215 (340)
T ss_dssp G-----GSCHHHHTTSEEEECCCCCHHHHHHHHHHHHH----TTTCCBCHHHHHHHHHHHTTC------HHHHHHHTTTT
T ss_pred c-----ccchhHHhhceeEeccCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHcCCC------HHHHHHHHHHH
Confidence 5 68999999999999999999999888887765 356788999999999988664 33466666544
No 102
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.59 E-value=9.7e-15 Score=166.19 Aligned_cols=232 Identities=16% Similarity=0.205 Sum_probs=150.0
Q ss_pred HHHHHHHHHhhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccc
Q 003094 520 DRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSE 599 (848)
Q Consensus 520 ~~l~~l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~ 599 (848)
..+..+.+.+...++||+++++.+..++... .++||+||||||||++|++||+.+ +...+|..+++..
T Consensus 11 ~~~~~l~~~l~~~ivGq~~~i~~l~~al~~~-----------~~VLL~GpPGtGKT~LAraLa~~l-~~~~~f~~~~~~~ 78 (500)
T 3nbx_X 11 ERISRLSSSLEKGLYERSHAIRLCLLAALSG-----------ESVFLLGPPGIAKSLIARRLKFAF-QNARAFEYLMTRF 78 (500)
T ss_dssp HHHHHHHHHHHTTCSSCHHHHHHHHHHHHHT-----------CEEEEECCSSSSHHHHHHHGGGGB-SSCCEEEEECCTT
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC-----------CeeEeecCchHHHHHHHHHHHHHH-hhhhHHHHHHHhc
Confidence 4466778889999999999998887776532 369999999999999999999986 4455666666653
Q ss_pred cccccchhcccCCCCCCcccccccchhHHHHc--CCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecCCeEE
Q 003094 600 FMERHTVSKLIGSPPGYVGYTEGGQLTEAVRR--RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLL 677 (848)
Q Consensus 600 ~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~--~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~ii 677 (848)
. +.+.++|...++... ..+.+..+... ...+|||||||+++++.+++.|+.+|+++.++. .|.....+..++
T Consensus 79 ~----t~~dL~G~~~~~~~~-~~g~~~~~~~g~l~~~~IL~IDEI~r~~~~~q~~LL~~lee~~v~i-~G~~~~~~~~~i 152 (500)
T 3nbx_X 79 S----TPEEVFGPLSIQALK-DEGRYERLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERQFRN-GAHVEKIPMRLL 152 (500)
T ss_dssp C----CHHHHHCCBC-----------CBCCTTSGGGCSEEEEESGGGCCHHHHHHHHHHHHSSEEEC-SSSEEECCCCEE
T ss_pred C----CHHHhcCcccHHHHh-hchhHHhhhccCCCcceeeeHHhHhhhcHHHHHHHHHHHHHHhccC-CCCcCCcchhhh
Confidence 1 235666643221110 01111111110 025699999999999999999999999999886 455555555567
Q ss_pred EEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCH-HHHHHHHHHHH---
Q 003094 678 IMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTK-LEVKEIADIML--- 753 (848)
Q Consensus 678 I~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~-~el~~I~~~~l--- 753 (848)
|++||.... ...+.+++++||...+.+++++. ++...|+....
T Consensus 153 I~ATN~lpe---------------------------------~~~~~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~~~~ 199 (500)
T 3nbx_X 153 VAASNELPE---------------------------------ADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDEN 199 (500)
T ss_dssp EEEESSCCC---------------------------------TTCTTHHHHTTCCEEEECCSCCCHHHHHHHHTCCCCTT
T ss_pred hhccccCCC---------------------------------ccccHHHHHHHHHHHHHHHHhhhhhhHHHHHhcccccC
Confidence 888873111 01245799999977899999987 66777775432
Q ss_pred ---------------HHHHHHHhcCCCeEeecHHHHHHHHHcc-------CCCCCCchHHHHHHHHHHHHHHHHHHHcc
Q 003094 754 ---------------KEVFDRLKTKDIELQVTERFRERVVEEG-------YNPSYGARPLRRAIMRLLEDSMAEKMLAR 810 (848)
Q Consensus 754 ---------------~~~~~~~~~~~~~l~i~~~a~~~l~~~~-------~~~~~g~r~L~~~i~~~l~~~l~~~~l~~ 810 (848)
..+.... ..+.+++++++++++.. .....+.|.+.. ++.-+-+.+.+.+
T Consensus 200 ~~~~~~~~~~~~e~l~~~~~~~----~~v~v~d~v~e~i~~l~~~lr~~r~~~~iS~R~~~~----llr~A~A~A~l~g 270 (500)
T 3nbx_X 200 DNPVPDALQVTDEEYERWQKEI----GEITLPDHVFELIFMLRQQLDKLPDAPYVSDRRWKK----AIRLLQASAFFSG 270 (500)
T ss_dssp SCCSCTTTSBCHHHHHHHHHHH----TTCBCCHHHHHHHHHHHHHHHHCSSSCCCCHHHHHH----HHHHHHHHHHHTT
T ss_pred CCCCCccceecHHHHHHHHhcC----CcccCchHHHHHHHHHHHHhhcCCCCCccchhHHHH----HHHHHHHHHhhcC
Confidence 1111111 24568999999888642 112334454443 4444555555554
No 103
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.59 E-value=9.3e-15 Score=161.07 Aligned_cols=204 Identities=15% Similarity=0.173 Sum_probs=143.9
Q ss_pred hhhhhhhcCCCCCccCChHHHHHHHHHh-ccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCC-CCC-----------
Q 003094 186 NLTKLAEEGKLDPVVGRQPQIERVVQIL-GRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPD-TIE----------- 252 (848)
Q Consensus 186 ~l~~~~~~~~ld~iiG~~~~~~~l~~~l-~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~-~l~----------- 252 (848)
.|+++++|.++++++|++..++.+...+ .....++++|+||+|+||||+++.+++.+....... .+.
T Consensus 3 ~w~~kyrP~~~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~ 82 (354)
T 1sxj_E 3 LWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRK 82 (354)
T ss_dssp -CTTTTCCCSGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC---------------
T ss_pred cchhccCCCCHHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccccc
Confidence 5889999999999999999999999988 776667799999999999999999999764321100 000
Q ss_pred -------CceEEEEeCCcccccccccchHHHHHHHHHHHHH--------------hCCCeEEEEcccchhhhCCCCCchH
Q 003094 253 -------GKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIK--------------QSDEIILFIDEVHTLIGAGAAEGAI 311 (848)
Q Consensus 253 -------~~~v~~~~~~~l~~~~~~~g~~~~~l~~l~~~~~--------------~~~~~IL~IDEid~l~~~~~~~~~~ 311 (848)
...++.++.+... .. . ...++..++.+. ..++.|++|||++.+. .
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~--~~---~-~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~--------~ 148 (354)
T 1sxj_E 83 LELNVVSSPYHLEITPSDMG--NN---D-RIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLT--------K 148 (354)
T ss_dssp ---CCEECSSEEEECCC------C---C-HHHHHHHHHHHTTTTC------------CCEEEEEECTTSSC--------H
T ss_pred ceeeeecccceEEecHhhcC--Cc---c-hHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccC--------H
Confidence 0112233222110 00 0 012333333332 1256799999999963 3
Q ss_pred HHHHHHhhhhc--CCceEEEEeeChHHHHhhhhcChhhhcccCCCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCC-hHHH
Q 003094 312 DAANILKPSLA--RGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYT-DEAL 388 (848)
Q Consensus 312 ~~~~~L~~~l~--~~~v~vI~atn~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s-~~~l 388 (848)
...+.|...++ ..+..+|.+|+..+ .+.+.+.+||..+.|++|+.++..++++..+.+ .++.++ ++++
T Consensus 149 ~~~~~L~~~le~~~~~~~~Il~t~~~~-----~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~l 219 (354)
T 1sxj_E 149 DAQAALRRTMEKYSKNIRLIMVCDSMS-----PIIAPIKSQCLLIRCPAPSDSEISTILSDVVTN----ERIQLETKDIL 219 (354)
T ss_dssp HHHHHHHHHHHHSTTTEEEEEEESCSC-----SSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHH----HTCEECCSHHH
T ss_pred HHHHHHHHHHHhhcCCCEEEEEeCCHH-----HHHHHHHhhceEEecCCcCHHHHHHHHHHHHHH----cCCCCCcHHHH
Confidence 45666777665 34577888887765 578999999999999999999999999988763 567788 9999
Q ss_pred HHHHhhhhcccccCCChhhHHHHHHHHhhH
Q 003094 389 VSAAQLSYQYISDRFLPDKAIDLIDEAGSR 418 (848)
Q Consensus 389 ~~l~~~s~~~~~~~~~p~~a~~ll~~a~~~ 418 (848)
..++..+.|. ++.++.+++.+...
T Consensus 220 ~~i~~~~~G~------~r~a~~~l~~~~~~ 243 (354)
T 1sxj_E 220 KRIAQASNGN------LRVSLLMLESMALN 243 (354)
T ss_dssp HHHHHHHTTC------HHHHHHHHTHHHHT
T ss_pred HHHHHHcCCC------HHHHHHHHHHHHHh
Confidence 9999888664 55688888776543
No 104
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.59 E-value=9.1e-15 Score=158.43 Aligned_cols=187 Identities=23% Similarity=0.330 Sum_probs=132.8
Q ss_pred HhhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCC--CceEEecccccccccc
Q 003094 528 TLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSE--EAMIRLDMSEFMERHT 605 (848)
Q Consensus 528 ~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~--~~~i~i~~~~~~~~~~ 605 (848)
..+++++|++.+++.+.+.+.. .+ ..++||+||||||||++|+.+++.+.+.. .+++.+|++.......
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l~~--------~~-~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 84 (319)
T 2chq_A 14 RTLDEVVGQDEVIQRLKGYVER--------KN-IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDV 84 (319)
T ss_dssp SSGGGSCSCHHHHHHHHTTTTT--------TC-CCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTTT
T ss_pred CCHHHHhCCHHHHHHHHHHHhC--------CC-CCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChHH
Confidence 4456799999998888766642 11 22499999999999999999999875443 3466777655321110
Q ss_pred hhcccCCCCCCcccccccchhHHHH-----cCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecCCeEEEEe
Q 003094 606 VSKLIGSPPGYVGYTEGGQLTEAVR-----RRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMT 680 (848)
Q Consensus 606 ~~~l~g~~~g~~g~~~~~~l~~~~~-----~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~t 680 (848)
+ ...+..... .+.+.||||||+|.++++.++.|++++++. ..+++||++
T Consensus 85 ~---------------~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~-----------~~~~~~i~~ 138 (319)
T 2chq_A 85 V---------------RHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMY-----------SKSCRFILS 138 (319)
T ss_dssp S---------------SHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSS-----------SSSEEEEEE
T ss_pred H---------------HHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhc-----------CCCCeEEEE
Confidence 0 011122221 245789999999999999999999999872 257889999
Q ss_pred cCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHHHHHHHHHHHH
Q 003094 681 SNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRL 760 (848)
Q Consensus 681 sN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~~~l~~~~~~~ 760 (848)
+|... .+.+++.+|| ..+.|.|++.+++.+++...+.+
T Consensus 139 ~~~~~------------------------------------~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~----- 176 (319)
T 2chq_A 139 CNYVS------------------------------------RIIEPIQSRC-AVFRFKPVPKEAMKKRLLEICEK----- 176 (319)
T ss_dssp ESCGG------------------------------------GSCHHHHTTC-EEEECCCCCHHHHHHHHHHHHHT-----
T ss_pred eCChh------------------------------------hcchHHHhhC-eEEEecCCCHHHHHHHHHHHHHH-----
Confidence 87432 2568899999 69999999999998888766542
Q ss_pred hcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHHHH
Q 003094 761 KTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRL 798 (848)
Q Consensus 761 ~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~ 798 (848)
.+ +.+++++++.|+.. +.++.|.+.+.++..
T Consensus 177 --~~--~~i~~~~l~~l~~~---~~G~~r~~~~~l~~~ 207 (319)
T 2chq_A 177 --EG--VKITEDGLEALIYI---SGGDFRKAINALQGA 207 (319)
T ss_dssp --TC--CCBCHHHHHHHHHT---TTTCHHHHHHHHHHH
T ss_pred --cC--CCCCHHHHHHHHHH---cCCCHHHHHHHHHHH
Confidence 23 45899999999973 244566666665544
No 105
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.59 E-value=9.4e-15 Score=158.94 Aligned_cols=189 Identities=20% Similarity=0.327 Sum_probs=133.4
Q ss_pred HHHHhhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCC--CceEEeccccccc
Q 003094 525 MEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSE--EAMIRLDMSEFME 602 (848)
Q Consensus 525 l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~--~~~i~i~~~~~~~ 602 (848)
+++..+++++||+.+++.+...+... + ..++||+||||||||++|+.+++.+.+.. ..++.++++....
T Consensus 19 ~~p~~~~~~~g~~~~~~~l~~~l~~~--------~-~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~ 89 (327)
T 1iqp_A 19 YRPQRLDDIVGQEHIVKRLKHYVKTG--------S-MPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERG 89 (327)
T ss_dssp TCCCSTTTCCSCHHHHHHHHHHHHHT--------C-CCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHH
T ss_pred cCCCCHHHhhCCHHHHHHHHHHHHcC--------C-CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCc
Confidence 44455678999999999998887642 1 13599999999999999999999874332 3456666554321
Q ss_pred ccchhcccCCCCCCcccccccchhHHHH-----cCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecCCeEE
Q 003094 603 RHTVSKLIGSPPGYVGYTEGGQLTEAVR-----RRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLL 677 (848)
Q Consensus 603 ~~~~~~l~g~~~g~~g~~~~~~l~~~~~-----~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~ii 677 (848)
..... ..+.+... .+.+.||||||+|.++++.++.|++++++.. .+++|
T Consensus 90 ~~~~~---------------~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~-----------~~~~~ 143 (327)
T 1iqp_A 90 INVIR---------------EKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFS-----------SNVRF 143 (327)
T ss_dssp HHTTH---------------HHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTT-----------TTEEE
T ss_pred hHHHH---------------HHHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcC-----------CCCeE
Confidence 11110 11112221 2457899999999999999999999998632 56789
Q ss_pred EEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHHHHHHHHH
Q 003094 678 IMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVF 757 (848)
Q Consensus 678 I~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~~~l~~~~ 757 (848)
|+++|.... +.+.+.+|| ..+.|+|++.+++..++...+..
T Consensus 144 i~~~~~~~~------------------------------------l~~~l~sr~-~~~~~~~l~~~~~~~~l~~~~~~-- 184 (327)
T 1iqp_A 144 ILSCNYSSK------------------------------------IIEPIQSRC-AIFRFRPLRDEDIAKRLRYIAEN-- 184 (327)
T ss_dssp EEEESCGGG------------------------------------SCHHHHHTE-EEEECCCCCHHHHHHHHHHHHHT--
T ss_pred EEEeCCccc------------------------------------cCHHHHhhC-cEEEecCCCHHHHHHHHHHHHHh--
Confidence 998874322 457889999 68999999999999888766542
Q ss_pred HHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHHH
Q 003094 758 DRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMR 797 (848)
Q Consensus 758 ~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~ 797 (848)
.+ +.++++++++|+... .++.|.+.+.++.
T Consensus 185 -----~~--~~~~~~~~~~l~~~~---~g~~r~~~~~l~~ 214 (327)
T 1iqp_A 185 -----EG--LELTEEGLQAILYIA---EGDMRRAINILQA 214 (327)
T ss_dssp -----TT--CEECHHHHHHHHHHH---TTCHHHHHHHHHH
T ss_pred -----cC--CCCCHHHHHHHHHHC---CCCHHHHHHHHHH
Confidence 23 458999999998842 3455655555543
No 106
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.58 E-value=1.8e-15 Score=160.52 Aligned_cols=203 Identities=18% Similarity=0.249 Sum_probs=132.3
Q ss_pred HhhccccChHHHHHHHHHHHHHHHccCC-CCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccch
Q 003094 528 TLHKRVIGQDEAVKAISRAIRRARVGLK-NPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTV 606 (848)
Q Consensus 528 ~l~~~vigq~~~~~~l~~~~~~~~~~~~-~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~ 606 (848)
.+...++|++.+++.+..........+. ....+..++||+||||||||++|+++|+.+ +.+++.++++..
T Consensus 30 ~~~~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~---~~~~~~i~~~~~------ 100 (272)
T 1d2n_A 30 YIMNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEES---NFPFIKICSPDK------ 100 (272)
T ss_dssp TCTTCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHH---TCSEEEEECGGG------
T ss_pred HHhcCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHh---CCCEEEEeCHHH------
Confidence 3456788998888877764221111111 113345679999999999999999999987 678888887652
Q ss_pred hcccCCCCCCcccccccchhHHHHcCCCeEEEEcCCCcC----------ChHHHHHHHhhhcCcEEEcCCCceeecCCeE
Q 003094 607 SKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKA----------HPDVFNMMLQILEDGRLTDSKGRTVDFKNTL 676 (848)
Q Consensus 607 ~~l~g~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l----------~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~i 676 (848)
++|...+ ........+++.+....++||||||||.+ ...+++.|...++... ....+++
T Consensus 101 --~~g~~~~-~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~--------~~~~~~~ 169 (272)
T 1d2n_A 101 --MIGFSET-AKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAP--------PQGRKLL 169 (272)
T ss_dssp --CTTCCHH-HHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCC--------STTCEEE
T ss_pred --hcCCchH-HHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCcc--------CCCCCEE
Confidence 2222100 00001123344445567899999999987 4557777777766421 0123567
Q ss_pred EEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcCh-hhhhccCeEEEcCCCCH-HHHHHHHHHHHH
Q 003094 677 LIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRP-EFLNRLDEMIVFRQLTK-LEVKEIADIMLK 754 (848)
Q Consensus 677 iI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~ll~R~d~~i~f~~l~~-~el~~I~~~~l~ 754 (848)
+|+|||.... +++ .+.+||+..+.|++++. +++..++...
T Consensus 170 ii~ttn~~~~------------------------------------l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~-- 211 (272)
T 1d2n_A 170 IIGTTSRKDV------------------------------------LQEMEMLNAFSTTIHVPNIATGEQLLEALELL-- 211 (272)
T ss_dssp EEEEESCHHH------------------------------------HHHTTCTTTSSEEEECCCEEEHHHHHHHHHHH--
T ss_pred EEEecCChhh------------------------------------cchhhhhcccceEEcCCCccHHHHHHHHHHhc--
Confidence 8889883221 122 56789989999999987 6766665431
Q ss_pred HHHHHHhcCCCeEeecHHHHHHHHHc--cCCCCCCchHHHHHHHHHHH
Q 003094 755 EVFDRLKTKDIELQVTERFRERVVEE--GYNPSYGARPLRRAIMRLLE 800 (848)
Q Consensus 755 ~~~~~~~~~~~~l~i~~~a~~~l~~~--~~~~~~g~r~L~~~i~~~l~ 800 (848)
..++++.+..++.. +|.|+.+.|.+.+.++....
T Consensus 212 ------------~~~~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~ 247 (272)
T 1d2n_A 212 ------------GNFKDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQ 247 (272)
T ss_dssp ------------TCSCHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTT
T ss_pred ------------CCCCHHHHHHHHHHhcCCCccccHHHHHHHHHHHhh
Confidence 13678888888875 67778889988888886543
No 107
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.57 E-value=1.8e-15 Score=160.00 Aligned_cols=198 Identities=20% Similarity=0.315 Sum_probs=129.7
Q ss_pred hccccChHHHHHHHHHHHHHHH-------ccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEeccccccc
Q 003094 530 HKRVIGQDEAVKAISRAIRRAR-------VGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFME 602 (848)
Q Consensus 530 ~~~vigq~~~~~~l~~~~~~~~-------~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~ 602 (848)
+++++|++.+++.+.+.+.... .+...| .++||+||||||||++|+++|+.+ +.+++.++++.+..
T Consensus 10 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~vll~G~~GtGKT~la~~la~~~---~~~~~~v~~~~~~~ 82 (268)
T 2r62_A 10 FKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIP----KGVLLVGPPGTGKTLLAKAVAGEA---HVPFFSMGGSSFIE 82 (268)
T ss_dssp STTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCC----SCCCCBCSSCSSHHHHHHHHHHHH---TCCCCCCCSCTTTT
T ss_pred HHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCC----ceEEEECCCCCcHHHHHHHHHHHh---CCCEEEechHHHHH
Confidence 4678999999988888776422 122222 248999999999999999999988 56888888877643
Q ss_pred ccchhcccCCCCCCcccccccchhHHHHcCCCeEEEEcCCCcCChH---------------HHHHHHhhhcCcEEEcCCC
Q 003094 603 RHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPD---------------VFNMMLQILEDGRLTDSKG 667 (848)
Q Consensus 603 ~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~---------------~~~~Ll~~le~g~~~~~~g 667 (848)
. +.|.. ......++..+....++||||||+|.+.+. .++.|+..+++..
T Consensus 83 ~-----~~~~~-----~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~------ 146 (268)
T 2r62_A 83 M-----FVGLG-----ASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFG------ 146 (268)
T ss_dssp S-----CSSSC-----SSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSS------
T ss_pred h-----hcchH-----HHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcc------
Confidence 2 12211 111234566666667799999999998653 4666777776421
Q ss_pred ceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhh--ccCeEEEcCCCCHHHH
Q 003094 668 RTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLN--RLDEMIVFRQLTKLEV 745 (848)
Q Consensus 668 ~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~--R~d~~i~f~~l~~~el 745 (848)
....++++|+|||.... +++++++ ||+..+.|++++.++.
T Consensus 147 --~~~~~v~vi~ttn~~~~------------------------------------ld~~l~r~~Rf~~~i~i~~p~~~~r 188 (268)
T 2r62_A 147 --SENAPVIVLAATNRPEI------------------------------------LDPALMRPGRFDRQVLVDKPDFNGR 188 (268)
T ss_dssp --CSCSCCEEEECBSCCTT------------------------------------SCGGGGSSSSSCCCCBCCCCCTTTH
T ss_pred --cCCCCEEEEEecCCchh------------------------------------cCHhHcCCCCCCeEEEecCcCHHHH
Confidence 01245789999985432 4577776 8988999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHHHHHH
Q 003094 746 KEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLE 800 (848)
Q Consensus 746 ~~I~~~~l~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~l~ 800 (848)
.+|+...+..+ ... ++..++.|+.. ...+..++|++.++++..
T Consensus 189 ~~il~~~~~~~-------~~~---~~~~~~~la~~--~~g~~g~dl~~l~~~a~~ 231 (268)
T 2r62_A 189 VEILKVHIKGV-------KLA---NDVNLQEVAKL--TAGLAGADLANIINEAAL 231 (268)
T ss_dssp HHHHHHHTSSS-------CCC---SSCCTTTTTSS--SCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-------CCC---CccCHHHHHHH--cCCCCHHHHHHHHHHHHH
Confidence 99987655321 111 11113344442 222334778777765554
No 108
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.57 E-value=4.3e-15 Score=163.60 Aligned_cols=206 Identities=17% Similarity=0.229 Sum_probs=134.6
Q ss_pred HHHHHHhhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcC---CCCceEEecccc
Q 003094 523 LKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFG---SEEAMIRLDMSE 599 (848)
Q Consensus 523 ~~l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~---~~~~~i~i~~~~ 599 (848)
.++++..+++++|++++++.+...+... ...+++|+||||||||++|+++++.+.+ ....++.++++.
T Consensus 29 ~k~~p~~~~~i~g~~~~~~~l~~~l~~~---------~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~ 99 (353)
T 1sxj_D 29 EKYRPKNLDEVTAQDHAVTVLKKTLKSA---------NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASD 99 (353)
T ss_dssp HHTCCSSTTTCCSCCTTHHHHHHHTTCT---------TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSS
T ss_pred HhcCCCCHHHhhCCHHHHHHHHHHHhcC---------CCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcccc
Confidence 3455566788999999998887776421 1124899999999999999999998742 234566777665
Q ss_pred cccccchhcccCCCC-CCcccccccchhHHHHcCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecCCeEEE
Q 003094 600 FMERHTVSKLIGSPP-GYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLI 678 (848)
Q Consensus 600 ~~~~~~~~~l~g~~~-g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI 678 (848)
......+...+.... ....... ...........+.||||||++.+++..++.|+++|++.. .+++||
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~-----------~~~~~i 167 (353)
T 1sxj_D 100 ERGISIVREKVKNFARLTVSKPS-KHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYS-----------GVTRFC 167 (353)
T ss_dssp CCCHHHHTTHHHHHHHSCCCCCC-TTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTT-----------TTEEEE
T ss_pred ccchHHHHHHHHHHhhhcccccc-hhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcC-----------CCceEE
Confidence 322111111000000 0000000 000000112356799999999999999999999998742 467788
Q ss_pred EecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHHHHHHHHHH
Q 003094 679 MTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFD 758 (848)
Q Consensus 679 ~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~~~l~~~~~ 758 (848)
+++|.... +.+.+.+|| ..+.|+|++.+++..++...+..
T Consensus 168 l~~~~~~~------------------------------------l~~~l~sR~-~~i~~~~~~~~~~~~~l~~~~~~--- 207 (353)
T 1sxj_D 168 LICNYVTR------------------------------------IIDPLASQC-SKFRFKALDASNAIDRLRFISEQ--- 207 (353)
T ss_dssp EEESCGGG------------------------------------SCHHHHHHS-EEEECCCCCHHHHHHHHHHHHHT---
T ss_pred EEeCchhh------------------------------------CcchhhccC-ceEEeCCCCHHHHHHHHHHHHHH---
Confidence 88873322 458899999 68999999999999888766542
Q ss_pred HHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHHHH
Q 003094 759 RLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRL 798 (848)
Q Consensus 759 ~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~ 798 (848)
.+ +.++++++++|++... ++.|.+.+.++..
T Consensus 208 ----~~--~~i~~~~l~~l~~~~~---G~~r~~~~~l~~~ 238 (353)
T 1sxj_D 208 ----EN--VKCDDGVLERILDISA---GDLRRGITLLQSA 238 (353)
T ss_dssp ----TT--CCCCHHHHHHHHHHTS---SCHHHHHHHHHHT
T ss_pred ----hC--CCCCHHHHHHHHHHcC---CCHHHHHHHHHHH
Confidence 23 4589999999998532 4455555555543
No 109
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.56 E-value=3e-14 Score=150.95 Aligned_cols=195 Identities=18% Similarity=0.158 Sum_probs=133.0
Q ss_pred CCCccCChHHHHHHHH-------Hhc---cCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCccc
Q 003094 196 LDPVVGRQPQIERVVQ-------ILG---RRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLV 265 (848)
Q Consensus 196 ld~iiG~~~~~~~l~~-------~l~---~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~ 265 (848)
.+.++|+.+.++.+.. .+. ...+.++||+||||||||++|+++++.+ +.+++.+++....
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~----------~~~~~~i~~~~~~ 101 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEES----------NFPFIKICSPDKM 101 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHH----------TCSEEEEECGGGC
T ss_pred hcCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHh----------CCCEEEEeCHHHh
Confidence 3467888877666554 332 4566789999999999999999999987 4568888776533
Q ss_pred ccccccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCC--CchHHHHHHHhhhhc-----CCceEEEEeeChHHHH
Q 003094 266 AGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAA--EGAIDAANILKPSLA-----RGELQCIGATTLDEYR 338 (848)
Q Consensus 266 ~~~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~--~~~~~~~~~L~~~l~-----~~~v~vI~atn~~~~~ 338 (848)
.+. ..+.....+..+++.+....+.+|||||+|.+++.... .....+.+.|...++ ...+++|++||.++
T Consensus 102 ~g~-~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~-- 178 (272)
T 1d2n_A 102 IGF-SETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKD-- 178 (272)
T ss_dssp TTC-CHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHH--
T ss_pred cCC-chHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChh--
Confidence 322 22334456778888887777899999999999754321 123456677766665 23578999999887
Q ss_pred hhhhcCh-hhhcccC-CCcCCCCCH-HHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCChhhHHHHHHHH
Q 003094 339 KHIEKDP-ALERRFQ-PVKVPEPSV-DETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEA 415 (848)
Q Consensus 339 ~~~~~d~-al~~Rf~-~i~~~~p~~-~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~p~~a~~ll~~a 415 (848)
.+++ .+.+||. .+.+|+++. ++...++.. ...++++.+..++..+.+|..... .++++.+++.+
T Consensus 179 ---~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~---------~~~~~~~~~~~l~~~~~g~~~~g~-ir~l~~~l~~a 245 (272)
T 1d2n_A 179 ---VLQEMEMLNAFSTTIHVPNIATGEQLLEALEL---------LGNFKDKERTTIAQQVKGKKVWIG-IKKLLMLIEMS 245 (272)
T ss_dssp ---HHHHTTCTTTSSEEEECCCEEEHHHHHHHHHH---------HTCSCHHHHHHHHHHHTTSEEEEC-HHHHHHHHHHH
T ss_pred ---hcchhhhhcccceEEcCCCccHHHHHHHHHHh---------cCCCCHHHHHHHHHHhcCCCcccc-HHHHHHHHHHH
Confidence 3455 6778986 778877665 444443332 124688899999998887642211 33466666655
Q ss_pred h
Q 003094 416 G 416 (848)
Q Consensus 416 ~ 416 (848)
.
T Consensus 246 ~ 246 (272)
T 1d2n_A 246 L 246 (272)
T ss_dssp T
T ss_pred h
Confidence 4
No 110
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.56 E-value=6.4e-14 Score=155.96 Aligned_cols=214 Identities=19% Similarity=0.226 Sum_probs=144.9
Q ss_pred CCCccCChHHHHHHHHHhcc----CCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccccc---
Q 003094 196 LDPVVGRQPQIERVVQILGR----RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGT--- 268 (848)
Q Consensus 196 ld~iiG~~~~~~~l~~~l~~----~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~--- 268 (848)
.++++|++++++++...+.. ..+.+++|+||||||||++++.+++.+..... ..-.+..++++++.......
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~ 96 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARAS-SLGVLVKPIYVNARHRETPYRVA 96 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHH-HHTCCEEEEEEETTTSCSHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHh-ccCCCeEEEEEECCcCCCHHHHH
Confidence 47899999999999988743 56778999999999999999999998843100 00014678888876533210
Q ss_pred -----------cccch-HHHHHHHHHHHHHhC-CCeEEEEcccchhhhCCCCCchHHHHHHHhhhhc----CCceEEEEe
Q 003094 269 -----------KYRGE-FEERLKKLMEEIKQS-DEIILFIDEVHTLIGAGAAEGAIDAANILKPSLA----RGELQCIGA 331 (848)
Q Consensus 269 -----------~~~g~-~~~~l~~l~~~~~~~-~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~----~~~v~vI~a 331 (848)
...+. ....+..++..+... .+++|||||+|.+.... ...+....+....+ ...+.+|++
T Consensus 97 ~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~---~~~~~l~~l~~~~~~~~~~~~~~~I~~ 173 (387)
T 2v1u_A 97 SAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP---GGQDLLYRITRINQELGDRVWVSLVGI 173 (387)
T ss_dssp HHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST---THHHHHHHHHHGGGCC-----CEEEEE
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC---CCChHHHhHhhchhhcCCCceEEEEEE
Confidence 01111 223344444444433 47899999999996432 12233333344443 567899999
Q ss_pred eChHHHHhhhhcChhhhcccC--CCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCChhhHH
Q 003094 332 TTLDEYRKHIEKDPALERRFQ--PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAI 409 (848)
Q Consensus 332 tn~~~~~~~~~~d~al~~Rf~--~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~p~~a~ 409 (848)
||..++.. .+++.+.+||. .+.|++|+.++..+|+...+... ..+..++++++..++..+....++ ++.+.
T Consensus 174 t~~~~~~~--~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~G~---~r~~~ 246 (387)
T 2v1u_A 174 TNSLGFVE--NLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEA--FNPGVLDPDVVPLCAALAAREHGD---ARRAL 246 (387)
T ss_dssp CSCSTTSS--SSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHH--BCTTTBCSSHHHHHHHHHHSSSCC---HHHHH
T ss_pred ECCCchHh--hhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhh--ccCCCCCHHHHHHHHHHHHHhccC---HHHHH
Confidence 98875322 56899999994 79999999999999999877631 234678889999999888733233 67788
Q ss_pred HHHHHHhhHHH
Q 003094 410 DLIDEAGSRVR 420 (848)
Q Consensus 410 ~ll~~a~~~~~ 420 (848)
+++..+...+.
T Consensus 247 ~~l~~a~~~a~ 257 (387)
T 2v1u_A 247 DLLRVAGEIAE 257 (387)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888865544
No 111
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.55 E-value=9.6e-14 Score=149.97 Aligned_cols=182 Identities=23% Similarity=0.269 Sum_probs=129.0
Q ss_pred CCccCChHHHHHHHHHhccC---------CCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCccccc
Q 003094 197 DPVVGRQPQIERVVQILGRR---------TKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAG 267 (848)
Q Consensus 197 d~iiG~~~~~~~l~~~l~~~---------~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~ 267 (848)
+.++|++..++.+...+... +..+++|+||||||||++|+++++.+... +.+++.++++.+...
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~-------~~~~~~~~~~~~~~~ 89 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT-------EEAMIRIDMTEYMEK 89 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSC-------GGGEEEEEGGGCCST
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCC-------CcceEEeeccccccc
Confidence 35889999999887776542 23468999999999999999999998642 456888888765431
Q ss_pred cc----------ccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCC-------------
Q 003094 268 TK----------YRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARG------------- 324 (848)
Q Consensus 268 ~~----------~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~------------- 324 (848)
.. +.|... ...+...+....+.+|||||+|.+. .+.++.|..+++.+
T Consensus 90 ~~~~~l~g~~~~~~~~~~--~~~~~~~~~~~~~~vl~lDEi~~l~--------~~~~~~Ll~~le~~~~~~~~~~~~~~~ 159 (311)
T 4fcw_A 90 HAVSRLIGAPPGYVGYEE--GGQLTEAVRRRPYSVILFDAIEKAH--------PDVFNILLQMLDDGRLTDSHGRTVDFR 159 (311)
T ss_dssp THHHHHHCCCTTSTTTTT--CCHHHHHHHHCSSEEEEEETGGGSC--------HHHHHHHHHHHHHSEEECTTSCEEECT
T ss_pred ccHHHhcCCCCccccccc--cchHHHHHHhCCCeEEEEeChhhcC--------HHHHHHHHHHHhcCEEEcCCCCEEECC
Confidence 10 001000 0223344455667899999999984 45778888887643
Q ss_pred ceEEEEeeChH---------------HHHh------hhhcChhhhcccC-CCcCCCCCHHHHHHHHHHHHHHHhhh----
Q 003094 325 ELQCIGATTLD---------------EYRK------HIEKDPALERRFQ-PVKVPEPSVDETIQILKGLRERYEIH---- 378 (848)
Q Consensus 325 ~v~vI~atn~~---------------~~~~------~~~~d~al~~Rf~-~i~~~~p~~~e~~~Il~~~~~~~~~~---- 378 (848)
++++|++||.. +... .-.++++|.+||. .+.+++|+.+++..|++.++.++...
T Consensus 160 ~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~ 239 (311)
T 4fcw_A 160 NTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEK 239 (311)
T ss_dssp TEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTT
T ss_pred CcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 46699999982 1111 1157899999996 88899999999999999877765432
Q ss_pred -hcCCCChHHHHHHHhhh
Q 003094 379 -HKLRYTDEALVSAAQLS 395 (848)
Q Consensus 379 -~~~~~s~~~l~~l~~~s 395 (848)
....++++++..++...
T Consensus 240 ~~~~~~~~~~~~~l~~~~ 257 (311)
T 4fcw_A 240 RISLELTEAAKDFLAERG 257 (311)
T ss_dssp TCEEEECHHHHHHHHHHS
T ss_pred CcEEEeCHHHHHHHHHhC
Confidence 24568899998888754
No 112
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.54 E-value=1.4e-14 Score=155.06 Aligned_cols=241 Identities=11% Similarity=0.045 Sum_probs=150.7
Q ss_pred cccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCC-------CCceEEeccccccccc
Q 003094 532 RVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGS-------EEAMIRLDMSEFMERH 604 (848)
Q Consensus 532 ~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~-------~~~~i~i~~~~~~~~~ 604 (848)
.+.|.+..++.|...+.....+. +..+++|+||||||||++++.+++.+... ...++.+||..+.+..
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~-----~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~ 95 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSS-----QNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMD 95 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT-----CCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--H
T ss_pred ccCCHHHHHHHHHHHHHHHhcCC-----CCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHH
Confidence 36778888888888887664332 22469999999999999999999988421 3467889998876543
Q ss_pred chh-----cccCCCCCCcccccccchhHHHH-----cCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecCC
Q 003094 605 TVS-----KLIGSPPGYVGYTEGGQLTEAVR-----RRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKN 674 (848)
Q Consensus 605 ~~~-----~l~g~~~g~~g~~~~~~l~~~~~-----~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~ 674 (848)
.+. .+.|....+ +.. ...+...+. .....||||||+|.+. -++.|+.+++-.. .+..+
T Consensus 96 ~~~~~I~~~L~g~~~~~-~~~-~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~--------~~~s~ 163 (318)
T 3te6_A 96 ALYEKIWFAISKENLCG-DIS-LEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWIS--------SKNSK 163 (318)
T ss_dssp HHHHHHHHHHSCCC--C-CCC-HHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHH--------CSSCC
T ss_pred HHHHHHHHHhcCCCCCc-hHH-HHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhccc--------ccCCc
Confidence 322 333432111 111 112222222 3456799999999997 4566666664211 01246
Q ss_pred eEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccC-eEEEcCCCCHHHHHHHHHHHH
Q 003094 675 TLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLD-EMIVFRQLTKLEVKEIADIML 753 (848)
Q Consensus 675 ~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d-~~i~f~~l~~~el~~I~~~~l 753 (848)
++||+++|.-.. . ...+++.+.+|+. ..|.|+||+.+++.+|+...+
T Consensus 164 ~~vI~i~n~~d~--------------------~------------~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl 211 (318)
T 3te6_A 164 LSIICVGGHNVT--------------------I------------REQINIMPSLKAHFTEIKLNKVDKNELQQMIITRL 211 (318)
T ss_dssp EEEEEECCSSCC--------------------C------------HHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHH
T ss_pred EEEEEEecCccc--------------------c------------hhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHH
Confidence 788999883221 0 0124567788996 579999999999999999988
Q ss_pred HHHHHHHh--------------------------cCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHHHHHHHHHHHHH
Q 003094 754 KEVFDRLK--------------------------TKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSMAEKM 807 (848)
Q Consensus 754 ~~~~~~~~--------------------------~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~l~~~l~~~~ 807 (848)
......+- ..+..+.++++++++++++.-...+.+|-.-+.+++.++-+=.+++
T Consensus 212 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ai~~~A~~vA~~~GD~R~Al~ilr~A~~~ae~e~~ 291 (318)
T 3te6_A 212 KSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVINHKINNKITQLIAKNVANVSGSTEKAFKICEAAVEISKKDFV 291 (318)
T ss_dssp HHHCCCEEEEECTTCCEEECCCC--------CTTEEEECEECCHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhccccccccccccccccccccccccccccccccccccccCHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHH
Confidence 77532100 0012346899999999985333345566666667766766666665
Q ss_pred HccccCCCCEEEEEE
Q 003094 808 LAREIKEGDSVIVDV 822 (848)
Q Consensus 808 l~~~~~~~~~~~v~~ 822 (848)
-+..... .++.|+.
T Consensus 292 ~k~~~~~-~~~~i~~ 305 (318)
T 3te6_A 292 RKGGLQK-GKLVVSQ 305 (318)
T ss_dssp HHTTEET-TEECCSE
T ss_pred hccCCCC-CcEEeeH
Confidence 5444332 3444433
No 113
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.54 E-value=4.1e-15 Score=141.40 Aligned_cols=138 Identities=11% Similarity=0.158 Sum_probs=102.7
Q ss_pred cccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhcccC
Q 003094 532 RVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIG 611 (848)
Q Consensus 532 ~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g 611 (848)
.++|++.+++.+.+.+...... ..+++|+||||||||++|+++|+.. . +++.+||+.+....
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~-------~~~vll~G~~GtGKt~lA~~i~~~~---~-~~~~~~~~~~~~~~------- 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKR-------TSPVFLTGEAGSPFETVARYFHKNG---T-PWVSPARVEYLIDM------- 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTC-------SSCEEEEEETTCCHHHHHGGGCCTT---S-CEECCSSTTHHHHC-------
T ss_pred CceeCCHHHHHHHHHHHHHhCC-------CCcEEEECCCCccHHHHHHHHHHhC---C-CeEEechhhCChHh-------
Confidence 5789999999999998865321 1249999999999999999999875 2 89999998764321
Q ss_pred CCCCCcccccccchhHHHHcCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCchhhhcc
Q 003094 612 SPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKG 691 (848)
Q Consensus 612 ~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~i~~~ 691 (848)
..+.+..+.+++|||||++.++++.|..|+++|+++. ..++++|+|||...... .
T Consensus 67 -------------~~~~~~~a~~~~l~lDei~~l~~~~q~~Ll~~l~~~~----------~~~~~iI~~tn~~~~~~-~- 121 (143)
T 3co5_A 67 -------------PMELLQKAEGGVLYVGDIAQYSRNIQTGITFIIGKAE----------RCRVRVIASCSYAAGSD-G- 121 (143)
T ss_dssp -------------HHHHHHHTTTSEEEEEECTTCCHHHHHHHHHHHHHHT----------TTTCEEEEEEEECTTTC---
T ss_pred -------------hhhHHHhCCCCeEEEeChHHCCHHHHHHHHHHHHhCC----------CCCEEEEEecCCCHHHH-H-
Confidence 2344555667899999999999999999999999753 25678999998543211 0
Q ss_pred CcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCe-EEEcCCCC
Q 003094 692 GRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDE-MIVFRQLT 741 (848)
Q Consensus 692 ~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~-~i~f~~l~ 741 (848)
.. |+++|++|+.. .|.++||.
T Consensus 122 ----------------------------~~-~~~~L~~rl~~~~i~lPpLr 143 (143)
T 3co5_A 122 ----------------------------IS-CEEKLAGLFSESVVRIPPLS 143 (143)
T ss_dssp -----------------------------C-HHHHHHHHSSSEEEEECCCC
T ss_pred ----------------------------hC-ccHHHHHHhcCcEEeCCCCC
Confidence 12 56889999855 48888874
No 114
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.53 E-value=4.2e-14 Score=156.41 Aligned_cols=186 Identities=25% Similarity=0.327 Sum_probs=128.5
Q ss_pred ccCChHHHHHHHHHhc-------------c--CCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCc
Q 003094 199 VVGRQPQIERVVQILG-------------R--RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGL 263 (848)
Q Consensus 199 iiG~~~~~~~l~~~l~-------------~--~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~ 263 (848)
++|++..++.+...+. . ..+.++||+||||||||++|+++|+.+ +.+++.++++.
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~----------~~~~~~~~~~~ 86 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL----------DVPFTMADATT 86 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT----------TCCEEEEEHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc----------CCCEEEechHH
Confidence 7999999999888772 1 256789999999999999999999988 56789999887
Q ss_pred ccccccccchH-HHHHHHHHHHH----HhCCCeEEEEcccchhhhCCCCCc------hHHHHHHHhhhhcC---------
Q 003094 264 LVAGTKYRGEF-EERLKKLMEEI----KQSDEIILFIDEVHTLIGAGAAEG------AIDAANILKPSLAR--------- 323 (848)
Q Consensus 264 l~~~~~~~g~~-~~~l~~l~~~~----~~~~~~IL~IDEid~l~~~~~~~~------~~~~~~~L~~~l~~--------- 323 (848)
+.. ..+.|.. ...+..++..+ ....++||||||+|.+.+.+.... ...+++.|+.+++.
T Consensus 87 l~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~ 165 (363)
T 3hws_A 87 LTE-AGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQG 165 (363)
T ss_dssp HTT-CHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC--------
T ss_pred hcc-cccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCcc
Confidence 653 2244543 44556666554 334567999999999976533221 12377888888772
Q ss_pred --------------CceEEEEeeChHHHHh----------------------------------------hhhcChhhhc
Q 003094 324 --------------GELQCIGATTLDEYRK----------------------------------------HIEKDPALER 349 (848)
Q Consensus 324 --------------~~v~vI~atn~~~~~~----------------------------------------~~~~d~al~~ 349 (848)
.++.+|++++..++.. ...+.|+|.+
T Consensus 166 ~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~ 245 (363)
T 3hws_A 166 GRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG 245 (363)
T ss_dssp --------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT
T ss_pred ccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc
Confidence 1234455544321111 0116899999
Q ss_pred ccC-CCcCCCCCHHHHHHHHHH----HHHHHhhh-----hcCCCChHHHHHHHhhh
Q 003094 350 RFQ-PVKVPEPSVDETIQILKG----LRERYEIH-----HKLRYTDEALVSAAQLS 395 (848)
Q Consensus 350 Rf~-~i~~~~p~~~e~~~Il~~----~~~~~~~~-----~~~~~s~~~l~~l~~~s 395 (848)
||+ .+.|++|+.+++.+|+.. +..++... ..+.+++++++.++..+
T Consensus 246 R~~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~ 301 (363)
T 3hws_A 246 RLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKA 301 (363)
T ss_dssp TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHH
T ss_pred ccCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhh
Confidence 998 667999999999999886 55544321 23457889988888753
No 115
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.53 E-value=1.2e-14 Score=168.61 Aligned_cols=179 Identities=20% Similarity=0.332 Sum_probs=119.0
Q ss_pred CCccCChHHHHHHHHHhc------cCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCccccc---
Q 003094 197 DPVVGRQPQIERVVQILG------RRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAG--- 267 (848)
Q Consensus 197 d~iiG~~~~~~~l~~~l~------~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~--- 267 (848)
++++|.++..+.+.+.+. .....+++|+||||||||+++++++..+ +.++..++++.+...
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l----------~~~~~~i~~~~~~~~~~~ 150 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL----------GRKFVRISLGGVRDESEI 150 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH----------TCEEEEECCCC-------
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc----------CCCeEEEEecccchhhhh
Confidence 348999998887755432 1245678999999999999999999998 456777777654321
Q ss_pred ----ccccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcC-----------------Cce
Q 003094 268 ----TKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR-----------------GEL 326 (848)
Q Consensus 268 ----~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~-----------------~~v 326 (848)
..+.|.....+...+..+...++ ||||||+|.+.+... .+.++.|+..++. ..+
T Consensus 151 ~g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~----~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v 225 (543)
T 3m6a_A 151 RGHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFR----GDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKV 225 (543)
T ss_dssp -------------CHHHHHHTTCSSSE-EEEEEESSSCC-------------CCGGGTCTTTTTBCCCSSSCCCCBCSSC
T ss_pred hhHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhc----cCHHHHHHHHHhhhhcceeecccCCeeecccce
Confidence 13445555555556665544444 999999999965421 1244556666642 457
Q ss_pred EEEEeeChHHHHhhhhcChhhhcccCCCcCCCCCHHHHHHHHHHHHH-HHhhhh-----cCCCChHHHHHHHhhh
Q 003094 327 QCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRE-RYEIHH-----KLRYTDEALVSAAQLS 395 (848)
Q Consensus 327 ~vI~atn~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~Il~~~~~-~~~~~~-----~~~~s~~~l~~l~~~s 395 (848)
++|+|||... .++++|++||..|.|+.|+.+++.+|++.++. ++...+ .+.++++++..++...
T Consensus 226 ~iI~ttN~~~-----~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~ 295 (543)
T 3m6a_A 226 LFIATANNLA-----TIPGPLRDRMEIINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYY 295 (543)
T ss_dssp EEEEECSSTT-----TSCHHHHHHEEEEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHH
T ss_pred EEEeccCccc-----cCCHHHHhhcceeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhC
Confidence 8999999986 68999999999999999999999999988652 222222 4467888888877633
No 116
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.53 E-value=3.6e-14 Score=153.96 Aligned_cols=190 Identities=14% Similarity=0.204 Sum_probs=132.9
Q ss_pred HHHHhhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCC--CCceEEeccccccc
Q 003094 525 MEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGS--EEAMIRLDMSEFME 602 (848)
Q Consensus 525 l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~--~~~~i~i~~~~~~~ 602 (848)
+++..+++++|++..++.+.+.+... ++ .+++|+||+|+|||++|+.+++.+.+. ...++.++++....
T Consensus 15 ~~p~~~~~~~g~~~~~~~l~~~l~~~--------~~-~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~ 85 (323)
T 1sxj_B 15 YRPQVLSDIVGNKETIDRLQQIAKDG--------NM-PHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRG 85 (323)
T ss_dssp TCCSSGGGCCSCTHHHHHHHHHHHSC--------CC-CCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCS
T ss_pred cCCCCHHHHHCCHHHHHHHHHHHHcC--------CC-CeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccC
Confidence 34445678999999999888887521 11 239999999999999999999987432 23455566544211
Q ss_pred ccchhcccCCCCCCcccccccchhHHHH-------cCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecCCe
Q 003094 603 RHTVSKLIGSPPGYVGYTEGGQLTEAVR-------RRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNT 675 (848)
Q Consensus 603 ~~~~~~l~g~~~g~~g~~~~~~l~~~~~-------~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~ 675 (848)
...+ ..+...+. ...+.||||||+|.++...++.|++++++. ..++
T Consensus 86 ~~~i----------------~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~-----------~~~~ 138 (323)
T 1sxj_B 86 IDVV----------------RNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELY-----------SNST 138 (323)
T ss_dssp HHHH----------------HTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHT-----------TTTE
T ss_pred hHHH----------------HHHHHHHHhccccCCCCCceEEEEECcccCCHHHHHHHHHHHhcc-----------CCCc
Confidence 1111 11122221 234689999999999999999999999863 2567
Q ss_pred EEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHHHHHHH
Q 003094 676 LLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKE 755 (848)
Q Consensus 676 iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~~~l~~ 755 (848)
+||++||... .+.+.+.+|| ..+.|+|++.+++.+++...+..
T Consensus 139 ~~il~~~~~~------------------------------------~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~ 181 (323)
T 1sxj_B 139 RFAFACNQSN------------------------------------KIIEPLQSQC-AILRYSKLSDEDVLKRLLQIIKL 181 (323)
T ss_dssp EEEEEESCGG------------------------------------GSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHH
T ss_pred eEEEEeCChh------------------------------------hchhHHHhhc-eEEeecCCCHHHHHHHHHHHHHH
Confidence 8888887322 2568899999 69999999999999999777654
Q ss_pred HHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHHHHH
Q 003094 756 VFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLL 799 (848)
Q Consensus 756 ~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~l 799 (848)
. + +.+++++++.|+..+ .++.|.+.+.++...
T Consensus 182 ~-------~--~~~~~~~~~~l~~~~---~G~~r~a~~~l~~~~ 213 (323)
T 1sxj_B 182 E-------D--VKYTNDGLEAIIFTA---EGDMRQAINNLQSTV 213 (323)
T ss_dssp H-------T--CCBCHHHHHHHHHHH---TTCHHHHHHHHHHHH
T ss_pred c-------C--CCCCHHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 1 2 347899999998853 244555555555443
No 117
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.53 E-value=2.4e-13 Score=151.09 Aligned_cols=188 Identities=24% Similarity=0.334 Sum_probs=123.3
Q ss_pred CccCChHHHHHHHHHhc------------------------------cCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCC
Q 003094 198 PVVGRQPQIERVVQILG------------------------------RRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDV 247 (848)
Q Consensus 198 ~iiG~~~~~~~l~~~l~------------------------------~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~ 247 (848)
.++|++..++.|...+. .....++||+||||||||++|+++|+.+
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l----- 96 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHL----- 96 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHT-----
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHh-----
Confidence 48999999998877661 1246789999999999999999999988
Q ss_pred CCCCCCceEEEEeCCcccccccccch-HHHHHHHHHHHH----HhCCCeEEEEcccchhhhCCCC------CchHHHHHH
Q 003094 248 PDTIEGKKVITLDMGLLVAGTKYRGE-FEERLKKLMEEI----KQSDEIILFIDEVHTLIGAGAA------EGAIDAANI 316 (848)
Q Consensus 248 ~~~l~~~~v~~~~~~~l~~~~~~~g~-~~~~l~~l~~~~----~~~~~~IL~IDEid~l~~~~~~------~~~~~~~~~ 316 (848)
+.+++.+++..+... .+.|. .+..+..++... ....+.||||||+|.+...+.. .....+++.
T Consensus 97 -----~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~ 170 (376)
T 1um8_A 97 -----DIPIAISDATSLTEA-GYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQA 170 (376)
T ss_dssp -----TCCEEEEEGGGCC---------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHH
T ss_pred -----CCCEEEecchhhhhc-CcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHH
Confidence 456888888776531 23332 233344444432 2345679999999999755211 112237788
Q ss_pred HhhhhcCC-----------------------ceEEEEeeChHHHHh----------------------------------
Q 003094 317 LKPSLARG-----------------------ELQCIGATTLDEYRK---------------------------------- 339 (848)
Q Consensus 317 L~~~l~~~-----------------------~v~vI~atn~~~~~~---------------------------------- 339 (848)
|+.+++.+ ++.+|+++|......
T Consensus 171 Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 250 (376)
T 1um8_A 171 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHD 250 (376)
T ss_dssp HHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHH
T ss_pred HHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHH
Confidence 88888743 357777776321110
Q ss_pred --hhhcChhhhcccC-CCcCCCCCHHHHHHHHH----HHHHHHhh-----hhcCCCChHHHHHHHhhhh
Q 003094 340 --HIEKDPALERRFQ-PVKVPEPSVDETIQILK----GLRERYEI-----HHKLRYTDEALVSAAQLSY 396 (848)
Q Consensus 340 --~~~~d~al~~Rf~-~i~~~~p~~~e~~~Il~----~~~~~~~~-----~~~~~~s~~~l~~l~~~s~ 396 (848)
...+.|.|.+||. .+.|++++.++...|+. .+..++.. ...+.++++++..++..+.
T Consensus 251 l~~~~~~p~l~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~ 319 (376)
T 1um8_A 251 LVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLAL 319 (376)
T ss_dssp HHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHH
T ss_pred HhhcCCChHHhcCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhc
Confidence 1246799999996 89999999999999987 24333321 1245688999998887643
No 118
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.52 E-value=1e-13 Score=143.52 Aligned_cols=198 Identities=12% Similarity=0.079 Sum_probs=131.8
Q ss_pred hhhhhc-CCCCCccCC---hHHHHHHHHHhccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCc
Q 003094 188 TKLAEE-GKLDPVVGR---QPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGL 263 (848)
Q Consensus 188 ~~~~~~-~~ld~iiG~---~~~~~~l~~~l~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~ 263 (848)
....++ .+|++++|. +..++.+...+......+++|+||||||||++++.+++.+... +..++++++..
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~-------~~~~~~~~~~~ 90 (242)
T 3bos_A 18 PVHLPDDETFTSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANEL-------ERRSFYIPLGI 90 (242)
T ss_dssp ECCCCTTCSTTTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHT-------TCCEEEEEGGG
T ss_pred CCCCCCCCChhhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHc-------CCeEEEEEHHH
Confidence 333444 578888873 4677778777776678899999999999999999999998643 45688888876
Q ss_pred ccccccccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCCceEEEEeeChHHHHhhhhc
Q 003094 264 LVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATTLDEYRKHIEK 343 (848)
Q Consensus 264 l~~~~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~atn~~~~~~~~~~ 343 (848)
+..... ..+... ..+.+|||||+|.+.... .....+...+....+.+.+.+|.+++.... .....
T Consensus 91 ~~~~~~----------~~~~~~--~~~~vliiDe~~~~~~~~--~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~-~~~~~ 155 (242)
T 3bos_A 91 HASIST----------ALLEGL--EQFDLICIDDVDAVAGHP--LWEEAIFDLYNRVAEQKRGSLIVSASASPM-EAGFV 155 (242)
T ss_dssp GGGSCG----------GGGTTG--GGSSEEEEETGGGGTTCH--HHHHHHHHHHHHHHHHCSCEEEEEESSCTT-TTTCC
T ss_pred HHHHHH----------HHHHhc--cCCCEEEEeccccccCCH--HHHHHHHHHHHHHHHcCCCeEEEEcCCCHH-HHHHh
Confidence 653211 111111 335699999999985320 001223344444445555535555543220 11134
Q ss_pred Chhhhccc---CCCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCChhhHHHHHHHHhh
Q 003094 344 DPALERRF---QPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGS 417 (848)
Q Consensus 344 d~al~~Rf---~~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~p~~a~~ll~~a~~ 417 (848)
++.+.+|| ..+.|++|+.+++.+++...+.. .++.++++++..++..+.+. .+.+..+++.+..
T Consensus 156 ~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~l~~~~~g~------~r~l~~~l~~~~~ 222 (242)
T 3bos_A 156 LPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAM----RGLQLPEDVGRFLLNRMARD------LRTLFDVLDRLDK 222 (242)
T ss_dssp CHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHH----TTCCCCHHHHHHHHHHTTTC------HHHHHHHHHHHHH
T ss_pred hhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHccCC------HHHHHHHHHHHHH
Confidence 58999999 68999999999999999987763 46778999999888876543 3445566655543
No 119
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.52 E-value=1.6e-13 Score=141.92 Aligned_cols=200 Identities=17% Similarity=0.229 Sum_probs=128.9
Q ss_pred HhhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccc----
Q 003094 528 TLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMER---- 603 (848)
Q Consensus 528 ~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~---- 603 (848)
..+.+++|++..++.+...+.... ....++|+||+|+|||++++.+++.+.... ......|......
T Consensus 20 ~~~~~~~g~~~~~~~l~~~l~~~~--------~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 90 (250)
T 1njg_A 20 QTFADVVGQEHVLTALANGLSLGR--------IHHAYLFSGTRGVGKTSIARLLAKGLNCET-GITATPCGVCDNCREIE 90 (250)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHTC--------CCSEEEEECSTTSCHHHHHHHHHHHHHCTT-CSCSSCCSCSHHHHHHH
T ss_pred ccHHHHhCcHHHHHHHHHHHHcCC--------CCeEEEEECCCCCCHHHHHHHHHHHhcCCC-CCCCCCCcccHHHHHHh
Confidence 345679999999999988886431 113589999999999999999999874322 1111111111000
Q ss_pred -cchhcccCCCCCCcccccccchhHHHHc-------CCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecCCe
Q 003094 604 -HTVSKLIGSPPGYVGYTEGGQLTEAVRR-------RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNT 675 (848)
Q Consensus 604 -~~~~~l~g~~~g~~g~~~~~~l~~~~~~-------~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~ 675 (848)
.....++..... .......+...+.. ..+.+|||||+|.+++..++.|++.+++. ..++
T Consensus 91 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~-----------~~~~ 157 (250)
T 1njg_A 91 QGRFVDLIEIDAA--SRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEP-----------PEHV 157 (250)
T ss_dssp TTCCSSEEEEETT--CGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSC-----------CTTE
T ss_pred ccCCcceEEecCc--ccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcC-----------CCce
Confidence 000001100000 00001122223322 24689999999999999999999999863 2567
Q ss_pred EEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHHHHHHH
Q 003094 676 LLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKE 755 (848)
Q Consensus 676 iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~~~l~~ 755 (848)
++|++||... .+.+.+++|+ ..+.|+|++.+++.+++...+..
T Consensus 158 ~~i~~t~~~~------------------------------------~~~~~l~~r~-~~i~l~~l~~~e~~~~l~~~~~~ 200 (250)
T 1njg_A 158 KFLLATTDPQ------------------------------------KLPVTILSRC-LQFHLKALDVEQIRHQLEHILNE 200 (250)
T ss_dssp EEEEEESCGG------------------------------------GSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHH
T ss_pred EEEEEeCChH------------------------------------hCCHHHHHHh-hhccCCCCCHHHHHHHHHHHHHh
Confidence 8888887322 2457788897 88999999999999998777654
Q ss_pred HHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHHHH
Q 003094 756 VFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRL 798 (848)
Q Consensus 756 ~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~ 798 (848)
.+ +.+++++++.|.+.+ .++.|.+.+.++++
T Consensus 201 -------~~--~~~~~~~~~~l~~~~---~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 201 -------EH--IAHEPRALQLLARAA---EGSLRDALSLTDQA 231 (250)
T ss_dssp -------TT--CCBCHHHHHHHHHHH---TTCHHHHHHHHHHH
T ss_pred -------cC--CCCCHHHHHHHHHHc---CCCHHHHHHHHHHH
Confidence 12 457899999998853 34566666665544
No 120
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.52 E-value=8.9e-14 Score=152.35 Aligned_cols=177 Identities=19% Similarity=0.336 Sum_probs=124.4
Q ss_pred HHHHHHhhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCC--ceEEeccccc
Q 003094 523 LKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEE--AMIRLDMSEF 600 (848)
Q Consensus 523 ~~l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~--~~i~i~~~~~ 600 (848)
.++++.-+..++||+.+++.|...+... ...+++|+||||||||++|+++++.+++... .+..+|.+..
T Consensus 17 ~k~rp~~~~~~~g~~~~~~~L~~~i~~g---------~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~ 87 (340)
T 1sxj_C 17 EKYRPETLDEVYGQNEVITTVRKFVDEG---------KLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDD 87 (340)
T ss_dssp HHTCCSSGGGCCSCHHHHHHHHHHHHTT---------CCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSC
T ss_pred HHhCCCcHHHhcCcHHHHHHHHHHHhcC---------CCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCccc
Confidence 3455556778999999999888877632 1234899999999999999999999865432 2344444321
Q ss_pred ccccchhcccCCCCCCcccccccchhHHHH-----cCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecCCe
Q 003094 601 MERHTVSKLIGSPPGYVGYTEGGQLTEAVR-----RRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNT 675 (848)
Q Consensus 601 ~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~-----~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~ 675 (848)
.....+. ..+..... ...+.|++|||+|.++.+.++.|++++|+. ..++
T Consensus 88 ~~~~~ir---------------~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~-----------~~~~ 141 (340)
T 1sxj_C 88 RGIDVVR---------------NQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERY-----------TKNT 141 (340)
T ss_dssp CSHHHHH---------------THHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHT-----------TTTE
T ss_pred ccHHHHH---------------HHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcC-----------CCCe
Confidence 1100000 11111111 123689999999999999999999999873 2567
Q ss_pred EEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHHHHHHH
Q 003094 676 LLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKE 755 (848)
Q Consensus 676 iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~~~l~~ 755 (848)
+||+++|.... +.+.+.+|| ..+.|.+++.+++.+++...+..
T Consensus 142 ~~il~~n~~~~------------------------------------i~~~i~sR~-~~~~~~~l~~~~~~~~l~~~~~~ 184 (340)
T 1sxj_C 142 RFCVLANYAHK------------------------------------LTPALLSQC-TRFRFQPLPQEAIERRIANVLVH 184 (340)
T ss_dssp EEEEEESCGGG------------------------------------SCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHT
T ss_pred EEEEEecCccc------------------------------------cchhHHhhc-eeEeccCCCHHHHHHHHHHHHHH
Confidence 88898884332 458899999 78999999999999888766642
Q ss_pred HHHHHhcCCCeEeecHHHHHHHHHc
Q 003094 756 VFDRLKTKDIELQVTERFRERVVEE 780 (848)
Q Consensus 756 ~~~~~~~~~~~l~i~~~a~~~l~~~ 780 (848)
..+.+++++.+.++..
T Consensus 185 ---------~~~~i~~~~~~~i~~~ 200 (340)
T 1sxj_C 185 ---------EKLKLSPNAEKALIEL 200 (340)
T ss_dssp ---------TTCCBCHHHHHHHHHH
T ss_pred ---------cCCCCCHHHHHHHHHH
Confidence 2245788888888873
No 121
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.52 E-value=8.2e-14 Score=154.55 Aligned_cols=204 Identities=17% Similarity=0.232 Sum_probs=133.7
Q ss_pred HHHHhhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEeccccc----
Q 003094 525 MEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEF---- 600 (848)
Q Consensus 525 l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~---- 600 (848)
+++..+++++|++..++.+...+...+ ....+||+||+|||||++|+.+++.+.+.. ......|...
T Consensus 10 ~rp~~~~~~vg~~~~~~~L~~~l~~~~--------~~~~~ll~G~~G~GKT~la~~la~~l~~~~-~~~~~~~~~~~~~~ 80 (373)
T 1jr3_A 10 WRPQTFADVVGQEHVLTALANGLSLGR--------IHHAYLFSGTRGVGKTSIARLLAKGLNCET-GITATPCGVCDNCR 80 (373)
T ss_dssp TCCCSTTTSCSCHHHHHHHHHHHHHTC--------CCSEEEEESCTTSSHHHHHHHHHHHHSCTT-CSCSSCCSSSHHHH
T ss_pred hCCCchhhccCcHHHHHHHHHHHHhCC--------CCeEEEEECCCCCCHHHHHHHHHHHhCCCC-CCCCCCCcccHHHH
Confidence 334456789999999999998886431 113589999999999999999999985422 1111112111
Q ss_pred --ccccchhcccCC-CCCCcccccccchhHHHHc----CCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecC
Q 003094 601 --MERHTVSKLIGS-PPGYVGYTEGGQLTEAVRR----RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFK 673 (848)
Q Consensus 601 --~~~~~~~~l~g~-~~g~~g~~~~~~l~~~~~~----~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~ 673 (848)
..... ..++.. ..+..+......+.+.+.. +.+.||||||+|.+++..++.|++.+++. ..
T Consensus 81 ~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~-----------~~ 148 (373)
T 1jr3_A 81 EIEQGRF-VDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEP-----------PE 148 (373)
T ss_dssp HHHTSCC-SSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSC-----------CS
T ss_pred HHhccCC-CceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcC-----------CC
Confidence 00000 001100 0011112122233333332 33679999999999999999999999872 25
Q ss_pred CeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHHHHH
Q 003094 674 NTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIML 753 (848)
Q Consensus 674 ~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~~~l 753 (848)
+++||+++|... .+.+.+.+|+ ..+.|+|++.+++.+++...+
T Consensus 149 ~~~~Il~~~~~~------------------------------------~l~~~l~sr~-~~i~~~~l~~~~~~~~l~~~~ 191 (373)
T 1jr3_A 149 HVKFLLATTDPQ------------------------------------KLPVTILSRC-LQFHLKALDVEQIRHQLEHIL 191 (373)
T ss_dssp SEEEEEEESCGG------------------------------------GSCHHHHTTS-EEEECCCCCHHHHHHHHHHHH
T ss_pred ceEEEEEeCChH------------------------------------hCcHHHHhhe-eEeeCCCCCHHHHHHHHHHHH
Confidence 778888886322 2457889999 899999999999999998776
Q ss_pred HHHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHHHH
Q 003094 754 KEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRL 798 (848)
Q Consensus 754 ~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~ 798 (848)
.+. + +.+++++++.|+... .++.|.+.+.+++.
T Consensus 192 ~~~-------~--~~~~~~a~~~l~~~~---~G~~r~~~~~l~~~ 224 (373)
T 1jr3_A 192 NEE-------H--IAHEPRALQLLARAA---EGSLRDALSLTDQA 224 (373)
T ss_dssp HHH-------T--CCBCHHHHHHHHHHS---SSCHHHHHHHHHHH
T ss_pred HHc-------C--CCCCHHHHHHHHHHC---CCCHHHHHHHHHHH
Confidence 542 2 347899999998843 34566666666554
No 122
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.52 E-value=4.4e-14 Score=160.57 Aligned_cols=199 Identities=21% Similarity=0.273 Sum_probs=131.7
Q ss_pred hhccccChHHHHHHHHHHHHHHHcc--CCC-CCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccc
Q 003094 529 LHKRVIGQDEAVKAISRAIRRARVG--LKN-PNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHT 605 (848)
Q Consensus 529 l~~~vigq~~~~~~l~~~~~~~~~~--~~~-~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~ 605 (848)
.+++|+|+++++..+.+.+...... +.. .-....+++|+||||||||++|++||..+ +.+++.++++++.+.
T Consensus 29 ~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~---~~~~i~i~g~~~~~~-- 103 (499)
T 2dhr_A 29 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA---RVPFITASGSDFVEM-- 103 (499)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT---TCCEEEEEGGGGTSS--
T ss_pred CHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCEEEEehhHHHHh--
Confidence 4678999999999998877654321 000 01112249999999999999999999987 578999998876432
Q ss_pred hhcccCCCCCCcccccc--cchhHHHHcCCCeEEEEcCCCcCCh--------------HHHHHHHhhhcCcEEEcCCCce
Q 003094 606 VSKLIGSPPGYVGYTEG--GQLTEAVRRRPYTVVLFDEIEKAHP--------------DVFNMMLQILEDGRLTDSKGRT 669 (848)
Q Consensus 606 ~~~l~g~~~g~~g~~~~--~~l~~~~~~~~~~Vl~lDEid~l~~--------------~~~~~Ll~~le~g~~~~~~g~~ 669 (848)
++|.... +.+++..+...++|+||||||.+.. ..++.|+..|+.+.-
T Consensus 104 ----------~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~------- 166 (499)
T 2dhr_A 104 ----------FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK------- 166 (499)
T ss_dssp ----------CTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCS-------
T ss_pred ----------hhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccccc-------
Confidence 2222111 1222222233468999999998742 466788888876441
Q ss_pred eecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhh--ccCeEEEcCCCCHHHHHH
Q 003094 670 VDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLN--RLDEMIVFRQLTKLEVKE 747 (848)
Q Consensus 670 v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~--R~d~~i~f~~l~~~el~~ 747 (848)
...+++|++||... .+++++++ |||..|.+++++.++..+
T Consensus 167 --~~~viviAatn~p~------------------------------------~LD~aLlr~gRfdr~i~i~~Pd~~~R~~ 208 (499)
T 2dhr_A 167 --DTAIVVMAATNRPD------------------------------------ILDPALLRPGRFDRQIAIDAPDVKGREQ 208 (499)
T ss_dssp --SCCCEEEECCSCGG------------------------------------GSCTTTSSTTSSCCEEECCCCCHHHHHH
T ss_pred --CccEEEEEecCChh------------------------------------hcCcccccccccceEEecCCCCHHHHHH
Confidence 13568888888432 25677775 899999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCeEeecHHH-HHHHHHccCCCCCC-chHHHHHHHHHHHH
Q 003094 748 IADIMLKEVFDRLKTKDIELQVTERF-RERVVEEGYNPSYG-ARPLRRAIMRLLED 801 (848)
Q Consensus 748 I~~~~l~~~~~~~~~~~~~l~i~~~a-~~~l~~~~~~~~~g-~r~L~~~i~~~l~~ 801 (848)
|+...+. +. .+++++ +..|+. .|+++ .++|++++++....
T Consensus 209 IL~~~~~---------~~--~l~~dv~l~~lA~---~t~G~~gadL~~lv~~Aa~~ 250 (499)
T 2dhr_A 209 ILRIHAR---------GK--PLAEDVDLALLAK---RTPGFVGADLENLLNEAALL 250 (499)
T ss_dssp HHHHTTS---------SS--CCCCSSTTHHHHT---TSCSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHh---------cC--CCChHHHHHHHHH---hcCCCCHHHHHHHHHHHHHH
Confidence 8864432 11 234443 444444 33333 48999888877653
No 123
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.51 E-value=3.9e-13 Score=149.71 Aligned_cols=217 Identities=19% Similarity=0.163 Sum_probs=145.4
Q ss_pred hhhhhhcCCCCCccCChHHHHHHHHHhc----cCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCC-CCCCCCceEEEEeC
Q 003094 187 LTKLAEEGKLDPVVGRQPQIERVVQILG----RRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDV-PDTIEGKKVITLDM 261 (848)
Q Consensus 187 l~~~~~~~~ld~iiG~~~~~~~l~~~l~----~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~-~~~l~~~~v~~~~~ 261 (848)
|...+.| ++++|++++++++...+. ...+.+++|+||||||||++++.+++.+..... .....+..++++++
T Consensus 13 l~~~~~p---~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~ 89 (384)
T 2qby_B 13 IDPLSVF---KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNC 89 (384)
T ss_dssp TCHHHHC---SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEH
T ss_pred cCCccCC---CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEEC
Confidence 3344444 789999999998886654 345668999999999999999999998743100 00000467888886
Q ss_pred Cccc-ccc---------------cccch-HHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCCchHHH-HHHHhhhhcC
Q 003094 262 GLLV-AGT---------------KYRGE-FEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDA-ANILKPSLAR 323 (848)
Q Consensus 262 ~~l~-~~~---------------~~~g~-~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~-~~~L~~~l~~ 323 (848)
.... ... ...+. ....+..+...+...++ +|||||+|.+.... ..+. ...|....
T Consensus 90 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-vlilDEi~~l~~~~----~~~~~l~~l~~~~-- 162 (384)
T 2qby_B 90 REVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRA-IIYLDEVDTLVKRR----GGDIVLYQLLRSD-- 162 (384)
T ss_dssp HHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCE-EEEEETTHHHHHST----TSHHHHHHHHTSS--
T ss_pred ccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCC-EEEEECHHHhccCC----CCceeHHHHhcCC--
Confidence 5432 100 00111 12234444444444444 99999999997542 1223 44444433
Q ss_pred CceEEEEeeChHHHHhhhhcChhhhcccC-CCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccC
Q 003094 324 GELQCIGATTLDEYRKHIEKDPALERRFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDR 402 (848)
Q Consensus 324 ~~v~vI~atn~~~~~~~~~~d~al~~Rf~-~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~ 402 (848)
.++.+|++|+..++. ..+++++.+||. .+.|++|+.++..+++...+.. ......++++++..+++.+.+..++
T Consensus 163 ~~~~iI~~t~~~~~~--~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~G~- 237 (384)
T 2qby_B 163 ANISVIMISNDINVR--DYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEY--GLIKGTYDDEILSYIAAISAKEHGD- 237 (384)
T ss_dssp SCEEEEEECSSTTTT--TTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHH--TSCTTSCCSHHHHHHHHHHHTTCCC-
T ss_pred cceEEEEEECCCchH--hhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHh--hcccCCcCHHHHHHHHHHHHhccCC-
Confidence 679999999887432 257899999984 8999999999999999987752 1234578899999999988744444
Q ss_pred CChhhHHHHHHHHhhHHH
Q 003094 403 FLPDKAIDLIDEAGSRVR 420 (848)
Q Consensus 403 ~~p~~a~~ll~~a~~~~~ 420 (848)
++.+++++..+...+.
T Consensus 238 --~r~a~~~l~~a~~~a~ 253 (384)
T 2qby_B 238 --ARKAVNLLFRAAQLAS 253 (384)
T ss_dssp --HHHHHHHHHHHHHHTT
T ss_pred --HHHHHHHHHHHHHHhc
Confidence 6778888888875543
No 124
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.51 E-value=1.6e-13 Score=150.80 Aligned_cols=164 Identities=18% Similarity=0.304 Sum_probs=102.7
Q ss_pred hcCCCCCccCChHHHHHHHHHhccCCCCCcEEECCCCCcHHHHHHHHHHHhhCC----CCCCCC-------C--------
Q 003094 192 EEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASG----DVPDTI-------E-------- 252 (848)
Q Consensus 192 ~~~~ld~iiG~~~~~~~l~~~l~~~~~~~iLL~GppGtGKT~la~~la~~l~~~----~~~~~l-------~-------- 252 (848)
++..|++++|+++.++.+...+..+...++||+||||||||++|+++++.+... ..+-.. .
T Consensus 19 ~~~~f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (350)
T 1g8p_A 19 PVFPFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLSTN 98 (350)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTCCCSCCC
T ss_pred CCCCchhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCccccccccccccccccccccchhhhhccc
Confidence 345788999999977776555544556789999999999999999999987521 000000 0
Q ss_pred ----CceEEEEeCCcccccccccchHHHHHHHHHHHH---------HhCCCeEEEEcccchhhhCCCCCchHHHHHHHhh
Q 003094 253 ----GKKVITLDMGLLVAGTKYRGEFEERLKKLMEEI---------KQSDEIILFIDEVHTLIGAGAAEGAIDAANILKP 319 (848)
Q Consensus 253 ----~~~v~~~~~~~l~~~~~~~g~~~~~l~~l~~~~---------~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~ 319 (848)
+.+++.+..+... ....|.. .+...+... ....+.+|||||+|.+. .+.++.|..
T Consensus 99 ~~~~~~~~~~~~~~~~~--~~l~g~~--~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~--------~~~~~~Ll~ 166 (350)
T 1g8p_A 99 VIRKPTPVVDLPLGVSE--DRVVGAL--DIERAISKGEKAFEPGLLARANRGYLYIDECNLLE--------DHIVDLLLD 166 (350)
T ss_dssp EEEECCCEEEECTTCCH--HHHHCEE--CHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSC--------HHHHHHHHH
T ss_pred cccCCCcccccCCCcch--hhheeec--hhhhhhcCCceeecCceeeecCCCEEEEeChhhCC--------HHHHHHHHH
Confidence 0112222111000 0000000 001111111 11236799999999984 346777777
Q ss_pred hhcCC---------------ceEEEEeeChHHHHhhhhcChhhhcccC-CCcCCCC-CHHHHHHHHHHH
Q 003094 320 SLARG---------------ELQCIGATTLDEYRKHIEKDPALERRFQ-PVKVPEP-SVDETIQILKGL 371 (848)
Q Consensus 320 ~l~~~---------------~v~vI~atn~~~~~~~~~~d~al~~Rf~-~i~~~~p-~~~e~~~Il~~~ 371 (848)
.++.+ .+++|+++|+.+. .++++|.+||. .+.++.| +.+++.+|++..
T Consensus 167 ~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~----~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~~ 231 (350)
T 1g8p_A 167 VAQSGENVVERDGLSIRHPARFVLVGSGNPEEG----DLRPQLLDRFGLSVEVLSPRDVETRVEVIRRR 231 (350)
T ss_dssp HHHHSEEEECCTTCCEEEECCEEEEEEECSCSC----CCCHHHHTTCSEEEECCCCCSHHHHHHHHHHH
T ss_pred HHhcCceEEEecceEEeeCCceEEEEEeCCCCC----CCCHHHHhhcceEEEcCCCCcHHHHHHHHHHH
Confidence 77643 6889999997442 58999999998 5999999 577777888763
No 125
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.50 E-value=2.2e-13 Score=148.64 Aligned_cols=178 Identities=11% Similarity=0.076 Sum_probs=115.7
Q ss_pred ccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCC----ceEE-eccccccccc--c
Q 003094 533 VIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEE----AMIR-LDMSEFMERH--T 605 (848)
Q Consensus 533 vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~----~~i~-i~~~~~~~~~--~ 605 (848)
+.||.++++.+.+.++.. +..+.+||+||+|+|||++|+.+|+.+.+... ++.. ..|..+.... +
T Consensus 4 ~pw~~~~~~~l~~~i~~~--------~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d 75 (334)
T 1a5t_A 4 YPWLRPDFEKLVASYQAG--------RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD 75 (334)
T ss_dssp CGGGHHHHHHHHHHHHTT--------CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT
T ss_pred CCchHHHHHHHHHHHHcC--------CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC
Confidence 568888888888877632 22235999999999999999999999865431 1100 0111111000 0
Q ss_pred hhcccCCC-CCCcccccccchhHHHHc----CCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecCCeEEEEe
Q 003094 606 VSKLIGSP-PGYVGYTEGGQLTEAVRR----RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMT 680 (848)
Q Consensus 606 ~~~l~g~~-~g~~g~~~~~~l~~~~~~----~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~t 680 (848)
+..+.+.. ....+.+..+.+.+.+.. +.+.|++|||+|+++.+.+|.|++.||+. ..+++||++
T Consensus 76 ~~~~~~~~~~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep-----------~~~~~~Il~ 144 (334)
T 1a5t_A 76 YYTLAPEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEP-----------PAETWFFLA 144 (334)
T ss_dssp EEEECCCTTCSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSC-----------CTTEEEEEE
T ss_pred EEEEeccccCCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCC-----------CCCeEEEEE
Confidence 11111100 011222112233333332 34689999999999999999999999972 367899999
Q ss_pred cCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHHHHHHHHHHHH
Q 003094 681 SNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRL 760 (848)
Q Consensus 681 sN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~~~l~~~~~~~ 760 (848)
||... .+.|.+++|| ..+.|++++.+++.+++....
T Consensus 145 t~~~~------------------------------------~l~~ti~SRc-~~~~~~~~~~~~~~~~L~~~~------- 180 (334)
T 1a5t_A 145 TREPE------------------------------------RLLATLRSRC-RLHYLAPPPEQYAVTWLSREV------- 180 (334)
T ss_dssp ESCGG------------------------------------GSCHHHHTTS-EEEECCCCCHHHHHHHHHHHC-------
T ss_pred eCChH------------------------------------hCcHHHhhcc-eeeeCCCCCHHHHHHHHHHhc-------
Confidence 87432 2568999999 889999999999988875432
Q ss_pred hcCCCeEeecHHHHHHHHHc
Q 003094 761 KTKDIELQVTERFRERVVEE 780 (848)
Q Consensus 761 ~~~~~~l~i~~~a~~~l~~~ 780 (848)
.+++++++.++..
T Consensus 181 -------~~~~~~~~~l~~~ 193 (334)
T 1a5t_A 181 -------TMSQDALLAALRL 193 (334)
T ss_dssp -------CCCHHHHHHHHHH
T ss_pred -------CCCHHHHHHHHHH
Confidence 3567777777663
No 126
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.50 E-value=1.2e-13 Score=145.61 Aligned_cols=184 Identities=20% Similarity=0.193 Sum_probs=111.3
Q ss_pred CCCCccCChHHHHHHHHHhcc--CCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccccc----
Q 003094 195 KLDPVVGRQPQIERVVQILGR--RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGT---- 268 (848)
Q Consensus 195 ~ld~iiG~~~~~~~l~~~l~~--~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~---- 268 (848)
+|++++|+++.++++.+.+.. ....+++|+||||||||++|+++++.+... +.+++.++++.+....
T Consensus 4 ~f~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~-------~~~~~~v~~~~~~~~~~~~~ 76 (265)
T 2bjv_A 4 YKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRW-------QGPFISLNCAALNENLLDSE 76 (265)
T ss_dssp ------CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTT-------TSCEEEEEGGGSCHHHHHHH
T ss_pred ccccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCcc-------CCCeEEEecCCCChhHHHHH
Confidence 688899999999988766543 456889999999999999999999876432 4578999987763210
Q ss_pred ---cccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCC-------------ceEEEEee
Q 003094 269 ---KYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARG-------------ELQCIGAT 332 (848)
Q Consensus 269 ---~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~-------------~v~vI~at 332 (848)
...|.+..........+....+.+|||||++.+. .+.++.|..+++.+ .+.+|++|
T Consensus 77 l~g~~~~~~~g~~~~~~~~l~~a~~~~l~lDEi~~l~--------~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~at 148 (265)
T 2bjv_A 77 LFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAP--------MMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCAT 148 (265)
T ss_dssp HHCCC---------CCCCHHHHTTTSEEEEESGGGSC--------HHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEE
T ss_pred hcCCcccccccccccccchhhhcCCcEEEEechHhcC--------HHHHHHHHHHHHhCCeecCCCcccccCCeEEEEec
Confidence 0000000000000001112345699999999984 34667777777632 57899999
Q ss_pred ChHHH--HhhhhcChhhhcccCC--CcCCCCCH--HHHHHHHHHHHHHHhhhhcC----CCChHHHHHHHh
Q 003094 333 TLDEY--RKHIEKDPALERRFQP--VKVPEPSV--DETIQILKGLRERYEIHHKL----RYTDEALVSAAQ 393 (848)
Q Consensus 333 n~~~~--~~~~~~d~al~~Rf~~--i~~~~p~~--~e~~~Il~~~~~~~~~~~~~----~~s~~~l~~l~~ 393 (848)
|.... ...-.+++.|.+||.. +.+|++.. ++...+++.++.++....+. .++++++..+..
T Consensus 149 n~~~~~~~~~~~~~~~L~~Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~L~~ 219 (265)
T 2bjv_A 149 NADLPAMVNEGTFRADLLDALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLN 219 (265)
T ss_dssp SSCHHHHHHHTSSCHHHHHHHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHHHHH
T ss_pred CcCHHHHHHcCCccHHHHHhhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHHHHh
Confidence 87432 1112367999999975 45555443 45555555555554333332 578888877764
No 127
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.50 E-value=2e-13 Score=144.45 Aligned_cols=209 Identities=20% Similarity=0.287 Sum_probs=135.8
Q ss_pred HhhccccChHHHHHHHHHHHHHH--------HccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccc
Q 003094 528 TLHKRVIGQDEAVKAISRAIRRA--------RVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSE 599 (848)
Q Consensus 528 ~l~~~vigq~~~~~~l~~~~~~~--------~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~ 599 (848)
.-+++|.|.+++++.|.+.+... ..++..|. +++|+||||||||+++++||..+ +..++.+++.+
T Consensus 7 ~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~----GvlL~Gp~GtGKTtLakala~~~---~~~~i~i~g~~ 79 (274)
T 2x8a_A 7 VTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPA----GVLLAGPPGCGKTLLAKAVANES---GLNFISVKGPE 79 (274)
T ss_dssp -----CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCS----EEEEESSTTSCHHHHHHHHHHHT---TCEEEEEETTT
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCC----eEEEECCCCCcHHHHHHHHHHHc---CCCEEEEEcHH
Confidence 34566777777777777655322 12333332 39999999999999999999987 45688888766
Q ss_pred cccccchhcccCCCCCCcccccc--cchhHHHHcCCCeEEEEcCCCcCC-----------hHHHHHHHhhhcCcEEEcCC
Q 003094 600 FMERHTVSKLIGSPPGYVGYTEG--GQLTEAVRRRPYTVVLFDEIEKAH-----------PDVFNMMLQILEDGRLTDSK 666 (848)
Q Consensus 600 ~~~~~~~~~l~g~~~g~~g~~~~--~~l~~~~~~~~~~Vl~lDEid~l~-----------~~~~~~Ll~~le~g~~~~~~ 666 (848)
+... |.|..+. +.++...+...++++|+||++.+. ..+.+.++..|+.|+-
T Consensus 80 l~~~------------~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~---- 143 (274)
T 2x8a_A 80 LLNM------------YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEA---- 143 (274)
T ss_dssp TCSS------------TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCS----
T ss_pred HHhh------------hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccc----
Confidence 5321 3332221 345555555677999999999763 2467888888887641
Q ss_pred CceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhh--ccCeEEEcCCCCHHH
Q 003094 667 GRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLN--RLDEMIVFRQLTKLE 744 (848)
Q Consensus 667 g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~--R~d~~i~f~~l~~~e 744 (848)
...+++++++|... .++|+++. |||..|.++.++.++
T Consensus 144 -----~~~~i~ia~tn~p~------------------------------------~LD~al~r~gRfd~~i~~~~P~~~~ 182 (274)
T 2x8a_A 144 -----RQQVFIMAATNRPD------------------------------------IIDPAILRPGRLDKTLFVGLPPPAD 182 (274)
T ss_dssp -----TTCEEEEEEESCGG------------------------------------GSCHHHHSTTSSCEEEECCSCCHHH
T ss_pred -----cCCEEEEeecCChh------------------------------------hCCHhhcCcccCCeEEEeCCcCHHH
Confidence 13567788887433 25788886 999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHHHHHHHHHHHHH
Q 003094 745 VKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSMAEKM 807 (848)
Q Consensus 745 l~~I~~~~l~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~l~~~l~~~~ 807 (848)
..+|++.++... ....+. .+--++.|+.......|...+|...++.....++-+.+
T Consensus 183 r~~il~~~~~~~------~~~~~~-~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~ 238 (274)
T 2x8a_A 183 RLAILKTITKNG------TKPPLD-ADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEM 238 (274)
T ss_dssp HHHHHHHHTTTT------BTTBBC-TTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcc------cCCCCc-cccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 999997665320 011111 11123455543222356778999999988887776653
No 128
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.49 E-value=2.2e-13 Score=148.15 Aligned_cols=196 Identities=16% Similarity=0.159 Sum_probs=127.4
Q ss_pred CCCCCcc-CCh--HHHHHHHHHhccC--CCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccccc
Q 003094 194 GKLDPVV-GRQ--PQIERVVQILGRR--TKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGT 268 (848)
Q Consensus 194 ~~ld~ii-G~~--~~~~~l~~~l~~~--~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~ 268 (848)
.+|++++ |.. .....+...+..+ ..++++|+||||||||++++++++.+... +.+++++++..+..
T Consensus 8 ~~f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~-------~~~~~~i~~~~~~~-- 78 (324)
T 1l8q_A 8 YTLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR-------GYRVIYSSADDFAQ-- 78 (324)
T ss_dssp CCSSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT-------TCCEEEEEHHHHHH--
T ss_pred CCcccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC-------CCEEEEEEHHHHHH--
Confidence 4688886 543 3444555555544 35789999999999999999999988542 45688888766531
Q ss_pred cccchHHHH-HHHHHHHHHhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCCceEEEEeeChHHHHhhhhcChhh
Q 003094 269 KYRGEFEER-LKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATTLDEYRKHIEKDPAL 347 (848)
Q Consensus 269 ~~~g~~~~~-l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~atn~~~~~~~~~~d~al 347 (848)
.+.+..... ...+..... .+.+|||||+|.+.... .....+...+....+.+..+++++++++.. ...+++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~--~~~vL~iDEi~~l~~~~--~~~~~l~~~l~~~~~~~~~iii~~~~~~~~--l~~l~~~L 152 (324)
T 1l8q_A 79 AMVEHLKKGTINEFRNMYK--SVDLLLLDDVQFLSGKE--RTQIEFFHIFNTLYLLEKQIILASDRHPQK--LDGVSDRL 152 (324)
T ss_dssp HHHHHHHHTCHHHHHHHHH--TCSEEEEECGGGGTTCH--HHHHHHHHHHHHHHHTTCEEEEEESSCGGG--CTTSCHHH
T ss_pred HHHHHHHcCcHHHHHHHhc--CCCEEEEcCcccccCCh--HHHHHHHHHHHHHHHCCCeEEEEecCChHH--HHHhhhHh
Confidence 111221111 111222222 35699999999985320 112334445555555666666666555431 12579999
Q ss_pred hccc---CCCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCChhhHHHHHHHHh
Q 003094 348 ERRF---QPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAG 416 (848)
Q Consensus 348 ~~Rf---~~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~p~~a~~ll~~a~ 416 (848)
.+|| ..+.|++ +.+++.+|++..+.. .++.++++++..++..+ +.+ +.+..++..++
T Consensus 153 ~sR~~~~~~i~l~~-~~~e~~~il~~~~~~----~~~~l~~~~l~~l~~~~-g~~------r~l~~~l~~~~ 212 (324)
T 1l8q_A 153 VSRFEGGILVEIEL-DNKTRFKIIKEKLKE----FNLELRKEVIDYLLENT-KNV------REIEGKIKLIK 212 (324)
T ss_dssp HHHHHTSEEEECCC-CHHHHHHHHHHHHHH----TTCCCCHHHHHHHHHHC-SSH------HHHHHHHHHHH
T ss_pred hhcccCceEEEeCC-CHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHhC-CCH------HHHHHHHHHHH
Confidence 9999 4789999 999999999988763 56789999999998877 443 33555555544
No 129
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.49 E-value=1.3e-12 Score=145.69 Aligned_cols=206 Identities=18% Similarity=0.203 Sum_probs=143.4
Q ss_pred CCccCChHHHHHHHHHhcc----CCCC--CcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCccccccc-
Q 003094 197 DPVVGRQPQIERVVQILGR----RTKN--NPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTK- 269 (848)
Q Consensus 197 d~iiG~~~~~~~l~~~l~~----~~~~--~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~~- 269 (848)
++++|++++++++...+.. ..+. +++|+||||+|||++++.+++.+.... +..++++++........
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~------~~~~~~i~~~~~~~~~~~ 90 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKT------TARFVYINGFIYRNFTAI 90 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC------CCEEEEEETTTCCSHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc------CeeEEEEeCccCCCHHHH
Confidence 7899999999998887764 3334 799999999999999999999885421 35788888755432100
Q ss_pred -------------ccc-hHHHHHHHHHHHHHh-CCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcC------CceEE
Q 003094 270 -------------YRG-EFEERLKKLMEEIKQ-SDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR------GELQC 328 (848)
Q Consensus 270 -------------~~g-~~~~~l~~l~~~~~~-~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~------~~v~v 328 (848)
..+ ........+...+.. ..+.+|||||+|.+ ..+....|..+++. .++.+
T Consensus 91 ~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l--------~~~~~~~L~~~~~~~~~~~~~~~~i 162 (389)
T 1fnn_A 91 IGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL--------APDILSTFIRLGQEADKLGAFRIAL 162 (389)
T ss_dssp HHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS--------CHHHHHHHHHHTTCHHHHSSCCEEE
T ss_pred HHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc--------chHHHHHHHHHHHhCCCCCcCCEEE
Confidence 011 112222233333332 45889999999998 23456666666642 57899
Q ss_pred EEeeChHHHHhhhhcChhhhcccC--CCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccc---cCC
Q 003094 329 IGATTLDEYRKHIEKDPALERRFQ--PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYIS---DRF 403 (848)
Q Consensus 329 I~atn~~~~~~~~~~d~al~~Rf~--~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~---~~~ 403 (848)
|++++..+... .+++.+.+||. .+.|++++.++..+++...+.... ....++++++..++..+.+..+ ...
T Consensus 163 I~~~~~~~~~~--~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~G 238 (389)
T 1fnn_A 163 VIVGHNDAVLN--NLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGL--AEGSYSEDILQMIADITGAQTPLDTNRG 238 (389)
T ss_dssp EEEESSTHHHH--TSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHB--CTTSSCHHHHHHHHHHHSBSSTTCTTSC
T ss_pred EEEECCchHHH--HhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhc--CCCCCCHHHHHHHHHHHhhcccCCCCCC
Confidence 99988775433 46899999996 699999999999999988776421 2346889999999998854311 012
Q ss_pred ChhhHHHHHHHHhhHHH
Q 003094 404 LPDKAIDLIDEAGSRVR 420 (848)
Q Consensus 404 ~p~~a~~ll~~a~~~~~ 420 (848)
.+..+++++..+...+.
T Consensus 239 ~~r~~~~~l~~a~~~a~ 255 (389)
T 1fnn_A 239 DARLAIDILYRSAYAAQ 255 (389)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 37778888888876553
No 130
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.49 E-value=8.6e-14 Score=151.43 Aligned_cols=173 Identities=13% Similarity=0.175 Sum_probs=120.0
Q ss_pred eEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhcccCCCCCCcccccccchhHHHHcCCCeEEEEcC
Q 003094 562 ASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDE 641 (848)
Q Consensus 562 ~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDE 641 (848)
.+++|+||||||||++|+++++.+...+.+++.+++..+..... ..+. ......+..... ..+||||||
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~~-~~~~--------~~~~~~~~~~~~--~~~vL~iDE 106 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMV-EHLK--------KGTINEFRNMYK--SVDLLLLDD 106 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHH-HHHH--------HTCHHHHHHHHH--TCSEEEEEC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHH-HHHH--------cCcHHHHHHHhc--CCCEEEEcC
Confidence 45999999999999999999998865577899999887643211 0000 001112223332 357999999
Q ss_pred CCcCCh--HHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHH
Q 003094 642 IEKAHP--DVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEEL 719 (848)
Q Consensus 642 id~l~~--~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l 719 (848)
++.++. ..++.|+.+++... ..+..+|++++.....+
T Consensus 107 i~~l~~~~~~~~~l~~~l~~~~----------~~~~~iii~~~~~~~~l------------------------------- 145 (324)
T 1l8q_A 107 VQFLSGKERTQIEFFHIFNTLY----------LLEKQIILASDRHPQKL------------------------------- 145 (324)
T ss_dssp GGGGTTCHHHHHHHHHHHHHHH----------HTTCEEEEEESSCGGGC-------------------------------
T ss_pred cccccCChHHHHHHHHHHHHHH----------HCCCeEEEEecCChHHH-------------------------------
Confidence 999986 67777777765311 01235666665333211
Q ss_pred HhhcChhhhhccC--eEEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHHH
Q 003094 720 KQYFRPEFLNRLD--EMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMR 797 (848)
Q Consensus 720 ~~~~~~~ll~R~d--~~i~f~~l~~~el~~I~~~~l~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~ 797 (848)
..+.+.|++||+ .++.|+| +.+++..|+...+.. .+ +.++++++++|+.. . .+.|.+.++++.
T Consensus 146 -~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~-------~~--~~l~~~~l~~l~~~--~--g~~r~l~~~l~~ 210 (324)
T 1l8q_A 146 -DGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKE-------FN--LELRKEVIDYLLEN--T--KNVREIEGKIKL 210 (324)
T ss_dssp -TTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHH-------TT--CCCCHHHHHHHHHH--C--SSHHHHHHHHHH
T ss_pred -HHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHh-------cC--CCCCHHHHHHHHHh--C--CCHHHHHHHHHH
Confidence 125789999996 6799999 999999999887753 12 46899999999995 3 678999998887
Q ss_pred HHHH
Q 003094 798 LLED 801 (848)
Q Consensus 798 ~l~~ 801 (848)
++..
T Consensus 211 ~~~~ 214 (324)
T 1l8q_A 211 IKLK 214 (324)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 7765
No 131
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.48 E-value=5.8e-13 Score=148.06 Aligned_cols=210 Identities=18% Similarity=0.267 Sum_probs=143.6
Q ss_pred CCCccCChHHHHHHHHHhc----cCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCccccc----
Q 003094 196 LDPVVGRQPQIERVVQILG----RRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAG---- 267 (848)
Q Consensus 196 ld~iiG~~~~~~~l~~~l~----~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~---- 267 (848)
.++++|++++++.+.+.+. .....+++|+||||||||++++.+++.+...... +..++++++......
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~ 94 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLG----KFKHVYINTRQIDTPYRVL 94 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCS----SCEEEEEEHHHHCSHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcC----CceEEEEECCCCCCHHHHH
Confidence 4789999999999988876 3556789999999999999999999987532100 356788876432110
Q ss_pred ----------ccccc-hHHHHHHHHHHHHHhCC-CeEEEEcccchhhhCCCCCchHHHHHHHhhhh---cCCceEEEEee
Q 003094 268 ----------TKYRG-EFEERLKKLMEEIKQSD-EIILFIDEVHTLIGAGAAEGAIDAANILKPSL---ARGELQCIGAT 332 (848)
Q Consensus 268 ----------~~~~g-~~~~~l~~l~~~~~~~~-~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l---~~~~v~vI~at 332 (848)
....+ .....+..+...+...+ +.+|||||++.+..... .+....|...+ ...++.+|++|
T Consensus 95 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~----~~~l~~l~~~~~~~~~~~~~~I~~~ 170 (386)
T 2qby_A 95 ADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYN----DDILYKLSRINSEVNKSKISFIGIT 170 (386)
T ss_dssp HHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSC----STHHHHHHHHHHSCCC--EEEEEEE
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCc----CHHHHHHhhchhhcCCCeEEEEEEE
Confidence 00111 12333444555554443 88999999999975421 12344444444 45678999999
Q ss_pred ChHHHHhhhhcChhhhcccC--CCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCChhhHHH
Q 003094 333 TLDEYRKHIEKDPALERRFQ--PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAID 410 (848)
Q Consensus 333 n~~~~~~~~~~d~al~~Rf~--~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~p~~a~~ 410 (848)
+..++.. .+++.+.+||. .+.|++++.++..+++...+... .....++++++..++..+....+ .+..+++
T Consensus 171 ~~~~~~~--~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~G---~~r~~~~ 243 (386)
T 2qby_A 171 NDVKFVD--LLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMA--FKPGVLPDNVIKLCAALAAREHG---DARRALD 243 (386)
T ss_dssp SCGGGGG--GCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHH--BCSSCSCHHHHHHHHHHHHHTTC---CHHHHHH
T ss_pred CCCChHh--hhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhh--ccCCCCCHHHHHHHHHHHHHhcC---CHHHHHH
Confidence 8775432 46889999993 79999999999999999876532 22457889999999988763222 3667888
Q ss_pred HHHHHhhHHH
Q 003094 411 LIDEAGSRVR 420 (848)
Q Consensus 411 ll~~a~~~~~ 420 (848)
+++.++..+.
T Consensus 244 ll~~a~~~a~ 253 (386)
T 2qby_A 244 LLRVSGEIAE 253 (386)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888865544
No 132
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.48 E-value=3.1e-13 Score=152.82 Aligned_cols=206 Identities=16% Similarity=0.153 Sum_probs=131.5
Q ss_pred CCCCcc-CChHH--HHHHHHHhccCC-CCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccccccc
Q 003094 195 KLDPVV-GRQPQ--IERVVQILGRRT-KNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKY 270 (848)
Q Consensus 195 ~ld~ii-G~~~~--~~~l~~~l~~~~-~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~~~ 270 (848)
+|++++ |..+. ...+..+...+. .++++|+||||+|||++++++++.+.... .+.+++++++..+.. ..
T Consensus 103 tfd~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~-----~~~~v~~v~~~~~~~--~~ 175 (440)
T 2z4s_A 103 TFENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNE-----PDLRVMYITSEKFLN--DL 175 (440)
T ss_dssp SGGGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHC-----CSSCEEEEEHHHHHH--HH
T ss_pred ChhhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhC-----CCCeEEEeeHHHHHH--HH
Confidence 577776 64443 334444444433 67899999999999999999999885321 145678888765431 11
Q ss_pred cchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCCceEEEEeeChHHHHhhhhcChhhhcc
Q 003094 271 RGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATTLDEYRKHIEKDPALERR 350 (848)
Q Consensus 271 ~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~atn~~~~~~~~~~d~al~~R 350 (848)
.+.........+.......+.+|||||+|.+.+.. .....+...+....+.+..+||++.+++.. ...+++++.+|
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~~--~~q~~l~~~l~~l~~~~~~iIitt~~~~~~--l~~l~~~L~sR 251 (440)
T 2z4s_A 176 VDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKT--GVQTELFHTFNELHDSGKQIVICSDREPQK--LSEFQDRLVSR 251 (440)
T ss_dssp HHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSCH--HHHHHHHHHHHHHHTTTCEEEEEESSCGGG--CSSCCHHHHHH
T ss_pred HHHHHcccHHHHHHHhcCCCCEEEEeCcccccCCh--HHHHHHHHHHHHHHHCCCeEEEEECCCHHH--HHHHHHHHHhh
Confidence 11111100011122122256799999999986320 112234444444455666666655544431 12378999999
Q ss_pred c---CCCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCChhhHHHHHHHHhhHHHH
Q 003094 351 F---QPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRL 421 (848)
Q Consensus 351 f---~~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~p~~a~~ll~~a~~~~~~ 421 (848)
| ..+.+++|+.+++.+|++..+.. .++.++++++..++..+.+. .+.+..+++.+...+..
T Consensus 252 ~~~g~~i~l~~p~~e~r~~iL~~~~~~----~~~~i~~e~l~~la~~~~gn------~R~l~~~L~~~~~~a~~ 315 (440)
T 2z4s_A 252 FQMGLVAKLEPPDEETRKSIARKMLEI----EHGELPEEVLNFVAENVDDN------LRRLRGAIIKLLVYKET 315 (440)
T ss_dssp HHSSBCCBCCCCCHHHHHHHHHHHHHH----HTCCCCTTHHHHHHHHCCSC------HHHHHHHHHHHHHHHHH
T ss_pred ccCCeEEEeCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHhcCCC------HHHHHHHHHHHHHHHHH
Confidence 9 48999999999999999987763 46788999999998876543 45677777777665544
No 133
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.48 E-value=1.4e-13 Score=151.74 Aligned_cols=200 Identities=16% Similarity=0.206 Sum_probs=123.6
Q ss_pred HHHhhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccc--
Q 003094 526 EETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMER-- 603 (848)
Q Consensus 526 ~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~-- 603 (848)
++..+++++||+.+++.+.+.+. .. .+. .+++|+||+|+|||+++++++..+++....-+.++...+...
T Consensus 9 rP~~~~~~vg~~~~~~~l~~~~~------~~-~~~-~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~ 80 (354)
T 1sxj_E 9 RPKSLNALSHNEELTNFLKSLSD------QP-RDL-PHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASN 80 (354)
T ss_dssp CCCSGGGCCSCHHHHHHHHTTTT------CT-TCC-CCEEEECSTTSSHHHHHHTHHHHHSCTTCCC-------------
T ss_pred CCCCHHHhcCCHHHHHHHHHHHh------hC-CCC-CeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccc
Confidence 33446789999999887766551 11 222 238999999999999999999977554432222221111000
Q ss_pred ----------cchhcccCCCCCCcccccccchhHHH----H-------------cCCCeEEEEcCCCcCChHHHHHHHhh
Q 003094 604 ----------HTVSKLIGSPPGYVGYTEGGQLTEAV----R-------------RRPYTVVLFDEIEKAHPDVFNMMLQI 656 (848)
Q Consensus 604 ----------~~~~~l~g~~~g~~g~~~~~~l~~~~----~-------------~~~~~Vl~lDEid~l~~~~~~~Ll~~ 656 (848)
.....+.+. ..+......+.+.+ . ...+.||+|||++.+++..++.|++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~~~~~L~~~ 157 (354)
T 1sxj_E 81 RKLELNVVSSPYHLEITPS---DMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRT 157 (354)
T ss_dssp -----CCEECSSEEEECCC-------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHHHHH
T ss_pred ccceeeeecccceEEecHh---hcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHHHHHHHHHH
Confidence 000001111 00111100111111 1 12467999999999999999999999
Q ss_pred hcCcEEEcCCCceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEE
Q 003094 657 LEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIV 736 (848)
Q Consensus 657 le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~ 736 (848)
|++. ..++.||++||.... +.+.+.+|| ..+.
T Consensus 158 le~~-----------~~~~~~Il~t~~~~~------------------------------------l~~~l~sR~-~~~~ 189 (354)
T 1sxj_E 158 MEKY-----------SKNIRLIMVCDSMSP------------------------------------IIAPIKSQC-LLIR 189 (354)
T ss_dssp HHHS-----------TTTEEEEEEESCSCS------------------------------------SCHHHHTTS-EEEE
T ss_pred HHhh-----------cCCCEEEEEeCCHHH------------------------------------HHHHHHhhc-eEEe
Confidence 9862 146788888874332 457899999 8999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHhcCCCeEeec-HHHHHHHHHccCCCCCCchHHHHHHH
Q 003094 737 FRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVT-ERFRERVVEEGYNPSYGARPLRRAIM 796 (848)
Q Consensus 737 f~~l~~~el~~I~~~~l~~~~~~~~~~~~~l~i~-~~a~~~l~~~~~~~~~g~r~L~~~i~ 796 (848)
|+|++.+++.+++...+.+. + +.++ +++++.|+..+ .++.|.+.+.++
T Consensus 190 ~~~~~~~~~~~~l~~~~~~~-------~--~~~~~~~~l~~i~~~~---~G~~r~a~~~l~ 238 (354)
T 1sxj_E 190 CPAPSDSEISTILSDVVTNE-------R--IQLETKDILKRIAQAS---NGNLRVSLLMLE 238 (354)
T ss_dssp CCCCCHHHHHHHHHHHHHHH-------T--CEECCSHHHHHHHHHH---TTCHHHHHHHHT
T ss_pred cCCcCHHHHHHHHHHHHHHc-------C--CCCCcHHHHHHHHHHc---CCCHHHHHHHHH
Confidence 99999999999998777541 3 3588 89999998742 234454444444
No 134
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.47 E-value=2.8e-13 Score=150.90 Aligned_cols=213 Identities=19% Similarity=0.212 Sum_probs=140.7
Q ss_pred hhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCC--------CCceEEeccccc
Q 003094 529 LHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGS--------EEAMIRLDMSEF 600 (848)
Q Consensus 529 l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~--------~~~~i~i~~~~~ 600 (848)
..+.++|++..++.+...+.....+ ....+++|+||||||||++|+.+++.+... +.+++.++|...
T Consensus 18 ~p~~l~gr~~~~~~l~~~l~~~~~~-----~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~ 92 (384)
T 2qby_B 18 VFKEIPFREDILRDAAIAIRYFVKN-----EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREV 92 (384)
T ss_dssp HCSSCTTCHHHHHHHHHHHHHHHTT-----CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcC-----CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccC
Confidence 3478999999999999998876543 112369999999999999999999987332 678889998765
Q ss_pred c-cccc-----hhcccCCCCCCccccccc---chhHHHHcCCCeEEEEcCCCcCChH-HHHH-HHhhhcCcEEEcCCCce
Q 003094 601 M-ERHT-----VSKLIGSPPGYVGYTEGG---QLTEAVRRRPYTVVLFDEIEKAHPD-VFNM-MLQILEDGRLTDSKGRT 669 (848)
Q Consensus 601 ~-~~~~-----~~~l~g~~~g~~g~~~~~---~l~~~~~~~~~~Vl~lDEid~l~~~-~~~~-Ll~~le~g~~~~~~g~~ 669 (848)
. .... ...+.|.+.++.|..... .+...+...+ .||||||+|.+... .++. +..+++..
T Consensus 93 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~-~vlilDEi~~l~~~~~~~~~l~~l~~~~--------- 162 (384)
T 2qby_B 93 GGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIR-AIIYLDEVDTLVKRRGGDIVLYQLLRSD--------- 162 (384)
T ss_dssp CSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSC-EEEEEETTHHHHHSTTSHHHHHHHHTSS---------
T ss_pred CCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCC-CEEEEECHHHhccCCCCceeHHHHhcCC---------
Confidence 4 2111 223445544444443222 2233333333 39999999998654 2444 44444321
Q ss_pred eecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHH
Q 003094 670 VDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIA 749 (848)
Q Consensus 670 v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~ 749 (848)
.++.||++||.... ...+.+.+.+|+...+.|+||+.+++.+|+
T Consensus 163 ---~~~~iI~~t~~~~~---------------------------------~~~l~~~l~sr~~~~i~l~~l~~~~~~~il 206 (384)
T 2qby_B 163 ---ANISVIMISNDINV---------------------------------RDYMEPRVLSSLGPSVIFKPYDAEQLKFIL 206 (384)
T ss_dssp ---SCEEEEEECSSTTT---------------------------------TTTSCHHHHHTCCCEEEECCCCHHHHHHHH
T ss_pred ---cceEEEEEECCCch---------------------------------HhhhCHHHHhcCCCeEEECCCCHHHHHHHH
Confidence 46789999874320 113568888998779999999999999999
Q ss_pred HHHHHHHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHHHHH
Q 003094 750 DIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLL 799 (848)
Q Consensus 750 ~~~l~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~l 799 (848)
...+... + ....+++++++.+++.+...+++.|.+.+.++..+
T Consensus 207 ~~~~~~~---~----~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~ 249 (384)
T 2qby_B 207 SKYAEYG---L----IKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAA 249 (384)
T ss_dssp HHHHHHT---S----CTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred HHHHHhh---c----ccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 8777530 1 12247888999888864433455666655555443
No 135
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.47 E-value=1.1e-14 Score=170.24 Aligned_cols=235 Identities=14% Similarity=0.117 Sum_probs=138.8
Q ss_pred HHHHHHHhhccccChHHHHHHHHHHHHHHHccCC------CCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEe
Q 003094 522 LLKMEETLHKRVIGQDEAVKAISRAIRRARVGLK------NPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRL 595 (848)
Q Consensus 522 l~~l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~------~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i 595 (848)
+..+.+.+...++||+.++..+..++. +.. ...++..++||+||||||||++|+++|+.+. ..+...
T Consensus 286 ~~~l~~~l~~~I~G~e~vk~al~~~l~----~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~---r~~~~~ 358 (595)
T 3f9v_A 286 RDRIISSIAPSIYGHWELKEALALALF----GGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAP---RAVYTT 358 (595)
T ss_dssp GGTHHHHTSSTTSCCHHHHHHHTTTTT----CCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCS---CEECCC
T ss_pred HHHHHHhhcchhcChHHHHHHHHHHHh----CCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCC---CceecC
Confidence 445667788899999998766643332 111 0011223699999999999999999998762 222211
Q ss_pred ----cccccccccchhcccCCCCCCcccccccchhHHHHcCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcC-CCce-
Q 003094 596 ----DMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDS-KGRT- 669 (848)
Q Consensus 596 ----~~~~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~-~g~~- 669 (848)
++..+......... .|. ...-.+.+..+.++|+|||||++++++.++.|+++||++.++.. .|..
T Consensus 359 ~~~~~~~~l~~~~~~~~~-------~g~--~~~~~G~l~~A~~gil~IDEid~l~~~~q~~Ll~~le~~~i~i~~~g~~~ 429 (595)
T 3f9v_A 359 GKGSTAAGLTAAVVREKG-------TGE--YYLEAGALVLADGGIAVIDEIDKMRDEDRVAIHEAMEQQTVSIAKAGIVA 429 (595)
T ss_dssp TTCSTTTTSEEECSSGGG-------TSS--CSEEECHHHHHSSSEECCTTTTCCCSHHHHHHHHHHHSSSEEEESSSSEE
T ss_pred CCccccccccceeeeccc-------ccc--ccccCCeeEecCCCcEEeehhhhCCHhHhhhhHHHHhCCEEEEecCCcEE
Confidence 11222111000000 010 01112234445678999999999999999999999999988632 2333
Q ss_pred eecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHH
Q 003094 670 VDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIA 749 (848)
Q Consensus 670 v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~ 749 (848)
....++.||+|+|..... |+....-.+ .-.++++|++|||.++.+.++..++...|+
T Consensus 430 ~~~~~~~vIaatNp~~G~---------~~~~~~~~~--------------ni~l~~aLl~RFDl~~~~~~~~~~e~~~i~ 486 (595)
T 3f9v_A 430 KLNARAAVIAAGNPKFGR---------YISERPVSD--------------NINLPPTILSRFDLIFILKDQPGEQDRELA 486 (595)
T ss_dssp EECCCCEEEEEECCTTCC---------SCTTSCSCT--------------TTCSCSSSGGGCSCCEEECCTTHHHHHHHH
T ss_pred EecCceEEEEEcCCcCCc---------cCcccCchh--------------ccCCCHHHHhhCeEEEEeCCCCCHHHHHHH
Confidence 334688999999954211 110000000 013789999999977777666555555566
Q ss_pred HHHHHH-----------------HHHHHhcCCCeEeecHHHHHHHHHccC------------CCCCCchHHHHHHH
Q 003094 750 DIMLKE-----------------VFDRLKTKDIELQVTERFRERVVEEGY------------NPSYGARPLRRAIM 796 (848)
Q Consensus 750 ~~~l~~-----------------~~~~~~~~~~~l~i~~~a~~~l~~~~~------------~~~~g~r~L~~~i~ 796 (848)
.+.+.. +....+. .....+++++.+.|.+.-. .+..+.|.+.+.++
T Consensus 487 ~~il~~~~~~~~~~~l~~~~l~~~i~~ar~-~~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lir 561 (595)
T 3f9v_A 487 NYILDVHSGKSTKNIIDIDTLRKYIAYARK-YVTPKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIR 561 (595)
T ss_dssp HHHHTTTCCCSSSSTTCCTTTHHHHHHHHH-HHCCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHH
T ss_pred HHHHHHhhccccccCCCHHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHH
Confidence 665532 1111110 1122577778888877411 46778888877776
No 136
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.46 E-value=2.2e-13 Score=157.55 Aligned_cols=209 Identities=14% Similarity=0.140 Sum_probs=134.1
Q ss_pred HHHHHHHhhccccChHHHHHHHHHHHHHHHc----cCCCCC----CCceEEEeecCCcchHHHHHHHHHHHhcCCCCceE
Q 003094 522 LLKMEETLHKRVIGQDEAVKAISRAIRRARV----GLKNPN----RPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMI 593 (848)
Q Consensus 522 l~~l~~~l~~~vigq~~~~~~l~~~~~~~~~----~~~~~~----~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i 593 (848)
.+++++.-+++++|++..++.+...+..+.. +...+. .+..++||+||||||||++|+++|+.+ +.+++
T Consensus 30 ~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l---~~~~i 106 (516)
T 1sxj_A 30 TVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL---GYDIL 106 (516)
T ss_dssp HHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT---TCEEE
T ss_pred ccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc---CCCEE
Confidence 3455556678899999999999999876432 222221 133579999999999999999999998 68899
Q ss_pred EecccccccccchhcccCCCCCCcccccccchhHHH-----HcCCCeEEEEcCCCcCChH---HHHHHHhhhcCcEEEcC
Q 003094 594 RLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAV-----RRRPYTVVLFDEIEKAHPD---VFNMMLQILEDGRLTDS 665 (848)
Q Consensus 594 ~i~~~~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~-----~~~~~~Vl~lDEid~l~~~---~~~~Ll~~le~g~~~~~ 665 (848)
.++++...........+.... +......++..+ ....+.||||||+|.++.. .++.|+++++..
T Consensus 107 ~in~s~~~~~~~~~~~i~~~~---~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~----- 178 (516)
T 1sxj_A 107 EQNASDVRSKTLLNAGVKNAL---DNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT----- 178 (516)
T ss_dssp EECTTSCCCHHHHHHTGGGGT---TBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC-----
T ss_pred EEeCCCcchHHHHHHHHHHHh---ccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc-----
Confidence 999988755432222221100 000001111111 2345789999999999764 458888888762
Q ss_pred CCceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHH
Q 003094 666 KGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEV 745 (848)
Q Consensus 666 ~g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el 745 (848)
+..||+++|.... ..+ +.+.+|+ ..+.|++++.+++
T Consensus 179 --------~~~iIli~~~~~~----------------------------------~~l-~~l~~r~-~~i~f~~~~~~~~ 214 (516)
T 1sxj_A 179 --------STPLILICNERNL----------------------------------PKM-RPFDRVC-LDIQFRRPDANSI 214 (516)
T ss_dssp --------SSCEEEEESCTTS----------------------------------STT-GGGTTTS-EEEECCCCCHHHH
T ss_pred --------CCCEEEEEcCCCC----------------------------------ccc-hhhHhce-EEEEeCCCCHHHH
Confidence 2234455542110 012 3466666 7999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHHH
Q 003094 746 KEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMR 797 (848)
Q Consensus 746 ~~I~~~~l~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~ 797 (848)
.+++...+... + +.+++++++.|+..+ .++.|.+.+.++.
T Consensus 215 ~~~L~~i~~~~-------~--~~i~~~~l~~la~~s---~GdiR~~i~~L~~ 254 (516)
T 1sxj_A 215 KSRLMTIAIRE-------K--FKLDPNVIDRLIQTT---RGDIRQVINLLST 254 (516)
T ss_dssp HHHHHHHHHHH-------T--CCCCTTHHHHHHHHT---TTCHHHHHHHHTH
T ss_pred HHHHHHHHHHc-------C--CCCCHHHHHHHHHHc---CCcHHHHHHHHHH
Confidence 99887665431 2 347889999998842 2345655555543
No 137
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.46 E-value=4.6e-13 Score=140.32 Aligned_cols=196 Identities=22% Similarity=0.329 Sum_probs=127.0
Q ss_pred hccccChHHHHHHHHHHHHHHH-------ccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEeccccccc
Q 003094 530 HKRVIGQDEAVKAISRAIRRAR-------VGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFME 602 (848)
Q Consensus 530 ~~~vigq~~~~~~l~~~~~~~~-------~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~ 602 (848)
+++++|+++++..+.+...... .+... |. +++|+||||||||+++++++..+ ..+++.+++..+..
T Consensus 15 ~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~---~~-g~ll~G~~G~GKTtl~~~i~~~~---~~~~i~~~~~~~~~ 87 (254)
T 1ixz_A 15 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARI---PK-GVLLVGPPGVGKTHLARAVAGEA---RVPFITASGSDFVE 87 (254)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCC---CS-EEEEECCTTSSHHHHHHHHHHHT---TCCEEEEEHHHHHH
T ss_pred HHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCC---CC-eEEEECCCCCCHHHHHHHHHHHh---CCCEEEeeHHHHHH
Confidence 4568888888777766554321 12222 22 38999999999999999999987 46788887765532
Q ss_pred ccchhcccCCCCCCcccc--cccchhHHHHcCCCeEEEEcCCCcCCh--------------HHHHHHHhhhcCcEEEcCC
Q 003094 603 RHTVSKLIGSPPGYVGYT--EGGQLTEAVRRRPYTVVLFDEIEKAHP--------------DVFNMMLQILEDGRLTDSK 666 (848)
Q Consensus 603 ~~~~~~l~g~~~g~~g~~--~~~~l~~~~~~~~~~Vl~lDEid~l~~--------------~~~~~Ll~~le~g~~~~~~ 666 (848)
. +.+.. ..+.+++......++++|+||+|.+.. ..++.++..|+.++-
T Consensus 88 ~------------~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~---- 151 (254)
T 1ixz_A 88 M------------FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK---- 151 (254)
T ss_dssp S------------CTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCT----
T ss_pred H------------HhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCC----
Confidence 1 11111 112344444444568999999986631 356777877776541
Q ss_pred CceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhh--ccCeEEEcCCCCHHH
Q 003094 667 GRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLN--RLDEMIVFRQLTKLE 744 (848)
Q Consensus 667 g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~--R~d~~i~f~~l~~~e 744 (848)
...+++++++|... .+++++++ ||+..+.+++++.++
T Consensus 152 -----~~~~i~~a~t~~p~------------------------------------~ld~~l~r~~rf~~~i~i~~p~~~~ 190 (254)
T 1ixz_A 152 -----DTAIVVMAATNRPD------------------------------------ILDPALLRPGRFDRQIAIDAPDVKG 190 (254)
T ss_dssp -----TCCEEEEEEESCGG------------------------------------GSCGGGGSTTSSCEEEECCSCCHHH
T ss_pred -----CCCEEEEEccCCch------------------------------------hCCHHHcCCCcCCeEEeeCCcCHHH
Confidence 13457777777332 25678876 899999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeEeecHHH-HHHHHHccCCCCCCchHHHHHHHHHHHHH
Q 003094 745 VKEIADIMLKEVFDRLKTKDIELQVTERF-RERVVEEGYNPSYGARPLRRAIMRLLEDS 802 (848)
Q Consensus 745 l~~I~~~~l~~~~~~~~~~~~~l~i~~~a-~~~l~~~~~~~~~g~r~L~~~i~~~l~~~ 802 (848)
..+|++..+.. . .+++++ +..++. ..+.+..++|++++++....+
T Consensus 191 r~~il~~~~~~---------~--~~~~~~~~~~la~--~~~G~~~~dl~~~~~~a~~~a 236 (254)
T 1ixz_A 191 REQILRIHARG---------K--PLAEDVDLALLAK--RTPGFVGADLENLLNEAALLA 236 (254)
T ss_dssp HHHHHHHHHTT---------S--CBCTTCCHHHHHH--TCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC---------C--CCCcccCHHHHHH--HcCCCCHHHHHHHHHHHHHHH
Confidence 99998654421 1 233333 556666 333445588988888766544
No 138
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=99.45 E-value=2.1e-11 Score=161.60 Aligned_cols=378 Identities=16% Similarity=0.204 Sum_probs=204.0
Q ss_pred CCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccccccccchHHHHHHHHHHHHHhCCCeEEEEcc
Q 003094 218 KNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDE 297 (848)
Q Consensus 218 ~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~IL~IDE 297 (848)
..+..+.||+|||||.+++.+|+.+ |..++.++|+.-..- ..+..+|.-+... +++.++||
T Consensus 604 ~~gg~~~GPaGtGKTet~k~La~~l----------gr~~~vfnC~~~~d~--------~~~g~i~~G~~~~-GaW~cfDE 664 (3245)
T 3vkg_A 604 RMGGNPFGPAGTGKTETVKALGSQL----------GRFVLVFCCDEGFDL--------QAMSRIFVGLCQC-GAWGCFDE 664 (3245)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHT----------TCCEEEEECSSCCCH--------HHHHHHHHHHHHH-TCEEEEET
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHh----------CCeEEEEeCCCCCCH--------HHHHHHHhhHhhc-CcEEEehh
Confidence 3456799999999999999999999 678999999765421 2345555555544 56899999
Q ss_pred cchhhhCCCCCchHHHHHHHhhhh----------------c-------CCceEEEEeeChHHHHhhhhcChhhhcccCCC
Q 003094 298 VHTLIGAGAAEGAIDAANILKPSL----------------A-------RGELQCIGATTLDEYRKHIEKDPALERRFQPV 354 (848)
Q Consensus 298 id~l~~~~~~~~~~~~~~~L~~~l----------------~-------~~~v~vI~atn~~~~~~~~~~d~al~~Rf~~i 354 (848)
++++-. ++...+...+ . +..+.+++|+|+ .|.+..++++.+.+||..|
T Consensus 665 fNrl~~--------~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNp-gY~gr~eLP~nLk~lFr~v 735 (3245)
T 3vkg_A 665 FNRLEE--------RILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNP-GYAGRSNLPDNLKKLFRSM 735 (3245)
T ss_dssp TTSSCH--------HHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCC-CGGGCCCSCHHHHTTEEEE
T ss_pred hhcCCH--------HHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCC-CccCcccChHHHHhhcEEE
Confidence 999832 2222221111 1 224678888887 6777779999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHH---HHHHHhhhhcccccC----CChhhHHHHHHHHhhHHHHhhcCC-
Q 003094 355 KVPEPSVDETIQILKGLRERYEIHHKLRYTDEA---LVSAAQLSYQYISDR----FLPDKAIDLIDEAGSRVRLRHAQL- 426 (848)
Q Consensus 355 ~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~---l~~l~~~s~~~~~~~----~~p~~a~~ll~~a~~~~~~~~~~~- 426 (848)
.+..|+.+...+|+-. ..++.-.... +..+.+++......+ +--+....+|..|+..-+-.....
T Consensus 736 ~m~~Pd~~~i~ei~L~-------s~Gf~~a~~La~k~~~~~~l~~e~LS~Q~HYDfGLRalKsVL~~AG~lkr~~~~~~~ 808 (3245)
T 3vkg_A 736 AMIKPDREMIAQVMLY-------SQGFKTAEVLAGKIVPLFKLCQEQLSAQSHYDFGLRALKSVLVSAGGIKRKCQPPQL 808 (3245)
T ss_dssp ECCSCCHHHHHHHHHH-------TTTCSCHHHHHHHHHHHHHHHHHSSCCCTTCCCSHHHHHHHHHHHHHHHHSCCCC--
T ss_pred EEeCCCHHHHHHHHHH-------HcccchHHHHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHhhhhhcc
Confidence 9999999988877542 1122211111 111222222211111 112233444444443222110000
Q ss_pred ---chHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCCCCccCHHHH---H
Q 003094 427 ---PEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDI---Q 500 (848)
Q Consensus 427 ---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~di---~ 500 (848)
+.. ..... .... .-..+-..+....++. ..+.+..+|+ .
T Consensus 809 ~~~~~~-~~~~~-------------------~~~~------~~~~E~~illralrd~---------nlpKl~~~D~plF~ 853 (3245)
T 3vkg_A 809 PPITDA-ESKTK-------------------ADQI------YCQYEIGVLLNSINDT---------MIPKLVADDIPLIQ 853 (3245)
T ss_dssp ----CH-HHHHH-------------------HHHH------HHHHHHHHHHHHHHHT---------TTTTSCGGGHHHHH
T ss_pred cccccc-ccccc-------------------cccc------ccccHHHHHHHHHHHh---------ccCCCchhhHHHHH
Confidence 000 00000 0000 0000011122222221 1233444444 3
Q ss_pred HHHHHhh-CCCCcccCcchHHHHHHHHHHh-hccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHH
Q 003094 501 HIVSAWT-GIPVEKVSTDESDRLLKMEETL-HKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELA 578 (848)
Q Consensus 501 ~~~~~~~-g~p~~~~~~~~~~~l~~l~~~l-~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA 578 (848)
.+++... |+........ .....+++.. ...+.-.+..+..+.+..+.... .++++++||||+|||++-
T Consensus 854 ~li~DlFPgv~~~~~~~~--~l~~ai~~~~~~~~L~~~~~~v~KviQLye~~~v--------RhGvmlVGp~gsGKTt~~ 923 (3245)
T 3vkg_A 854 SLLLDVFPGSQLQPIQMD--QLRKKIQEIAKQRHLVTKQEWVEKILQLHQILNI--------NHGVMMVGPSGGGKTTSW 923 (3245)
T ss_dssp HHHHHHSTTCCCCCCCCH--HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTT--------CSEEEEECSSSSSHHHHH
T ss_pred HHHHHhCCCCCCCCCchH--HHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHh--------eeeEEEECCCCCCHHHHH
Confidence 3344332 3332222221 1112233333 23455556666666666555422 145999999999999999
Q ss_pred HHHHHHhcCC---CCceEEecccccccccchhcccCCCCCCcccccccchhHHHHcC---------CCeEEEEcCCCcCC
Q 003094 579 KALAAYYFGS---EEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRR---------PYTVVLFDEIEKAH 646 (848)
Q Consensus 579 ~~la~~l~~~---~~~~i~i~~~~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~---------~~~Vl~lDEid~l~ 646 (848)
+.|++.+..- ......+|...+ +...|+|.-.....+=..|.+...+|+. ...+|+|| .-++
T Consensus 924 ~~L~~al~~l~~~~~~~~~iNPKai----t~~eLyG~~d~~T~EW~DGvls~i~R~~~~~~~~~~~~~~WIvfD--GpVD 997 (3245)
T 3vkg_A 924 EVYLEAIEQVDNIKSEAHVMDPKAI----TKDQLFGSLDLTTREWTDGLFTATLRRIIDNVRGESTKRHWIIFD--GDVD 997 (3245)
T ss_dssp HHHHHHHTTTTTCEEEEEEECTTTS----CHHHHHEEECTTTCCEEECHHHHHHHHHHTTSSSGGGEEEEEEEE--SCCC
T ss_pred HHHHHHHHHhhCCCceEEEECCCCC----chhhhceeecCCCCeeeccHHHHHHHHHHhcccCCCCCceEEEEC--CCCC
Confidence 9999987432 122334454443 2345676522211111225555555542 14599999 4566
Q ss_pred hHHHHHHHhhhcC-cEEEcCCCceeecC-CeEEEEec
Q 003094 647 PDVFNMMLQILED-GRLTDSKGRTVDFK-NTLLIMTS 681 (848)
Q Consensus 647 ~~~~~~Ll~~le~-g~~~~~~g~~v~~~-~~iiI~ts 681 (848)
+...+-|..+||+ ..++...|.++..+ ++.+|+-.
T Consensus 998 a~WIEnlNsVLDDNK~LtL~nGErI~l~~~~~liFEv 1034 (3245)
T 3vkg_A 998 PEWVENLNSLLDDNKLLTLPNGERLALPNNVRVMFEV 1034 (3245)
T ss_dssp HHHHTTTHHHHSSSCEECCTTSCCEECCTTEEEEEEE
T ss_pred HHHHHHHHHHhcCCCeeecCCCCeeecCCCCEEEEEe
Confidence 7888888888876 56777888887764 77777765
No 139
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.44 E-value=2.2e-13 Score=146.41 Aligned_cols=179 Identities=17% Similarity=0.236 Sum_probs=117.7
Q ss_pred CCccCChHHHHHHHHHhcc--CCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCccccc-------
Q 003094 197 DPVVGRQPQIERVVQILGR--RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAG------- 267 (848)
Q Consensus 197 d~iiG~~~~~~~l~~~l~~--~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~------- 267 (848)
++++|+.+.++++.+.+.. ....++||+||||||||++|+++++..... +.+++.++|+.+...
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~-------~~~~v~v~~~~~~~~l~~~~lf 74 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSARS-------DRPLVTLNCAALNESLLESELF 74 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSSCS-------SSCCCEEECSSCCHHHHHHHHT
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCccc-------CCCeEEEeCCCCChHHHHHHhc
Confidence 4689999999988877654 567889999999999999999999976432 456888998765320
Q ss_pred ----ccccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCC-------------ceEEEE
Q 003094 268 ----TKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARG-------------ELQCIG 330 (848)
Q Consensus 268 ----~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~-------------~v~vI~ 330 (848)
+.+.|.... ....+.. ..+.+|||||++.+. .+.+..|..+++.+ .+.+|+
T Consensus 75 g~~~g~~tg~~~~-~~g~~~~---a~~g~L~LDEi~~l~--------~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~ 142 (304)
T 1ojl_A 75 GHEKGAFTGADKR-REGRFVE---ADGGTLFLDEIGDIS--------PLMQVRLLRAIQEREVQRVGSNQTISVDVRLIA 142 (304)
T ss_dssp CCCSSCCC---CC-CCCHHHH---HTTSEEEEESCTTCC--------HHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEE
T ss_pred CccccccCchhhh-hcCHHHh---cCCCEEEEeccccCC--------HHHHHHHHHHHhcCEeeecCCcccccCCeEEEE
Confidence 011111110 1112222 234699999999984 34677777777644 388999
Q ss_pred eeChHHHH--hhhhcChhhhcccCCCc--CCCCC--HHHHHHHHHHHHHHHhhhh---cCCCChHHHHHHHhh
Q 003094 331 ATTLDEYR--KHIEKDPALERRFQPVK--VPEPS--VDETIQILKGLRERYEIHH---KLRYTDEALVSAAQL 394 (848)
Q Consensus 331 atn~~~~~--~~~~~d~al~~Rf~~i~--~~~p~--~~e~~~Il~~~~~~~~~~~---~~~~s~~~l~~l~~~ 394 (848)
+||..... ..-..++.|..||..+. +|++. .++...++..++.++.... ...++++++..+...
T Consensus 143 atn~~l~~~v~~g~fr~~L~~Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~ 215 (304)
T 1ojl_A 143 ATHRDLAEEVSAGRFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHY 215 (304)
T ss_dssp EESSCHHHHHHHTSSCHHHHHHHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHC
T ss_pred ecCccHHHHHHhCCcHHHHHhhcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcC
Confidence 99975221 11135788999997554 55544 4555566666666554332 246788888887764
No 140
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.44 E-value=1.4e-12 Score=134.83 Aligned_cols=168 Identities=14% Similarity=0.198 Sum_probs=118.1
Q ss_pred eEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhcccCCCCCCcccccccchhHHHHcCCCeEEEEcC
Q 003094 562 ASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDE 641 (848)
Q Consensus 562 ~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDE 641 (848)
.+++|+||||||||++|+.+++.+...+.+++.+++..+.... .. ....+ ..+.||||||
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~~--~~----------------~~~~~--~~~~vliiDe 112 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASIS--TA----------------LLEGL--EQFDLICIDD 112 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGSC--GG----------------GGTTG--GGSSEEEEET
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH--HH----------------HHHhc--cCCCEEEEec
Confidence 4699999999999999999999986666778888887764321 00 00111 2357999999
Q ss_pred CCcCChHH--HHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHH
Q 003094 642 IEKAHPDV--FNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEEL 719 (848)
Q Consensus 642 id~l~~~~--~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l 719 (848)
++.++... ++.|+.+++... ......+|+++|......
T Consensus 113 ~~~~~~~~~~~~~l~~~l~~~~---------~~~~~~ii~~~~~~~~~~------------------------------- 152 (242)
T 3bos_A 113 VDAVAGHPLWEEAIFDLYNRVA---------EQKRGSLIVSASASPMEA------------------------------- 152 (242)
T ss_dssp GGGGTTCHHHHHHHHHHHHHHH---------HHCSCEEEEEESSCTTTT-------------------------------
T ss_pred cccccCCHHHHHHHHHHHHHHH---------HcCCCeEEEEcCCCHHHH-------------------------------
Confidence 99998765 888888876421 011224667776333211
Q ss_pred HhhcChhhhhccC--eEEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHHH
Q 003094 720 KQYFRPEFLNRLD--EMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMR 797 (848)
Q Consensus 720 ~~~~~~~ll~R~d--~~i~f~~l~~~el~~I~~~~l~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~ 797 (848)
..+.+.+.+|+. .++.|++++.+++.+++...+.. .+ +.++++++++|... +.++.|.+.+.++.
T Consensus 153 -~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~-------~~--~~~~~~~~~~l~~~---~~g~~r~l~~~l~~ 219 (242)
T 3bos_A 153 -GFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAM-------RG--LQLPEDVGRFLLNR---MARDLRTLFDVLDR 219 (242)
T ss_dssp -TCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHH-------TT--CCCCHHHHHHHHHH---TTTCHHHHHHHHHH
T ss_pred -HHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHH-------cC--CCCCHHHHHHHHHH---ccCCHHHHHHHHHH
Confidence 013477888885 78999999999999999877753 12 35899999999984 24678888888887
Q ss_pred HHHHH
Q 003094 798 LLEDS 802 (848)
Q Consensus 798 ~l~~~ 802 (848)
++..+
T Consensus 220 ~~~~a 224 (242)
T 3bos_A 220 LDKAS 224 (242)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76644
No 141
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.44 E-value=1.3e-12 Score=145.72 Aligned_cols=220 Identities=14% Similarity=0.159 Sum_probs=146.4
Q ss_pred ccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCC-CCceEEecccccccccch-h-
Q 003094 531 KRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGS-EEAMIRLDMSEFMERHTV-S- 607 (848)
Q Consensus 531 ~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~-~~~~i~i~~~~~~~~~~~-~- 607 (848)
+.++|++..++.+...+.....+... ...+++|+||+|||||++++.+++.+... +..++.++|......... .
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~---~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 93 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGH---HYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGE 93 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTS---SCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCC---CCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHH
Confidence 57999999999999998876443111 11258999999999999999999998655 568889998765432111 1
Q ss_pred --cccCCCCCCcccccc---cchhHHHHc-CCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecCCeEEEEec
Q 003094 608 --KLIGSPPGYVGYTEG---GQLTEAVRR-RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTS 681 (848)
Q Consensus 608 --~l~g~~~g~~g~~~~---~~l~~~~~~-~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~ts 681 (848)
..+|......+.... ..+...+.. ..+.||||||++.+++..++.|+.++++..-. ...++.||+++
T Consensus 94 l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~-------~~~~~~iI~~~ 166 (389)
T 1fnn_A 94 IARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKL-------GAFRIALVIVG 166 (389)
T ss_dssp HHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHH-------SSCCEEEEEEE
T ss_pred HHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCC-------CcCCEEEEEEE
Confidence 122332212221111 122233333 34679999999999999999999999763200 00366888888
Q ss_pred CCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCe-EEEcCCCCHHHHHHHHHHHHHHHHHHH
Q 003094 682 NVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDE-MIVFRQLTKLEVKEIADIMLKEVFDRL 760 (848)
Q Consensus 682 N~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~-~i~f~~l~~~el~~I~~~~l~~~~~~~ 760 (848)
|... +...+.+.+.+||.. .+.|+||+.+++.+++...+....
T Consensus 167 ~~~~---------------------------------~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~--- 210 (389)
T 1fnn_A 167 HNDA---------------------------------VLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGL--- 210 (389)
T ss_dssp SSTH---------------------------------HHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHB---
T ss_pred CCch---------------------------------HHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhc---
Confidence 7321 122366788888865 799999999999999977765311
Q ss_pred hcCCCeEeecHHHHHHHHHccCCC------CCCchHHHHHHHHHHH
Q 003094 761 KTKDIELQVTERFRERVVEEGYNP------SYGARPLRRAIMRLLE 800 (848)
Q Consensus 761 ~~~~~~l~i~~~a~~~l~~~~~~~------~~g~r~L~~~i~~~l~ 800 (848)
....+++++++.+....+.. .++.|.+.+.++..+.
T Consensus 211 ----~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~ 252 (389)
T 1fnn_A 211 ----AEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAY 252 (389)
T ss_dssp ----CTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHH
T ss_pred ----CCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHH
Confidence 11258999999999865322 4556767666665543
No 142
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.43 E-value=1.8e-12 Score=157.48 Aligned_cols=179 Identities=20% Similarity=0.254 Sum_probs=131.4
Q ss_pred CCccCChHHHHHHHHHhcc---------CCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCccccc
Q 003094 197 DPVVGRQPQIERVVQILGR---------RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAG 267 (848)
Q Consensus 197 d~iiG~~~~~~~l~~~l~~---------~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~ 267 (848)
+.++|+++.++.+...+.. ++..++||+||||||||++|+++++.+ +.+++.++++.+...
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l----------~~~~~~i~~s~~~~~ 527 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL----------GIELLRFDMSEYMER 527 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH----------TCEEEEEEGGGCSSS
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh----------cCCEEEEechhhcch
Confidence 4699999999888776543 122378999999999999999999998 467899998876532
Q ss_pred ----------ccccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCC-------------
Q 003094 268 ----------TKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARG------------- 324 (848)
Q Consensus 268 ----------~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~------------- 324 (848)
..|.|..+ -..+.+.++...++||||||++.+. .++++.|+++++.+
T Consensus 528 ~~~~~l~g~~~g~~g~~~--~~~l~~~~~~~~~~vl~lDEi~~~~--------~~~~~~Ll~~le~~~~~~~~g~~~~~~ 597 (758)
T 1r6b_X 528 HTVSRLIGAPPGYVGFDQ--GGLLTDAVIKHPHAVLLLDEIEKAH--------PDVFNILLQVMDNGTLTDNNGRKADFR 597 (758)
T ss_dssp SCCSSSCCCCSCSHHHHH--TTHHHHHHHHCSSEEEEEETGGGSC--------HHHHHHHHHHHHHSEEEETTTEEEECT
T ss_pred hhHhhhcCCCCCCcCccc--cchHHHHHHhCCCcEEEEeCccccC--------HHHHHHHHHHhcCcEEEcCCCCEEecC
Confidence 01333211 1234555666778899999999883 45889999988754
Q ss_pred ceEEEEeeChHHHH------------------h--hhhcChhhhcccC-CCcCCCCCHHHHHHHHHHHHHHHhhh-----
Q 003094 325 ELQCIGATTLDEYR------------------K--HIEKDPALERRFQ-PVKVPEPSVDETIQILKGLRERYEIH----- 378 (848)
Q Consensus 325 ~v~vI~atn~~~~~------------------~--~~~~d~al~~Rf~-~i~~~~p~~~e~~~Il~~~~~~~~~~----- 378 (848)
++++|+|||..... . .-.++|+|.+||+ .|.|++|+.+++..|++.++.++...
T Consensus 598 ~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~ 677 (758)
T 1r6b_X 598 NVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKG 677 (758)
T ss_dssp TEEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 36699999873200 0 0146899999996 89999999999999999887754321
Q ss_pred hcCCCChHHHHHHHhhh
Q 003094 379 HKLRYTDEALVSAAQLS 395 (848)
Q Consensus 379 ~~~~~s~~~l~~l~~~s 395 (848)
..+.++++++..++...
T Consensus 678 ~~~~~~~~a~~~l~~~~ 694 (758)
T 1r6b_X 678 VSLEVSQEARNWLAEKG 694 (758)
T ss_dssp EEEEECHHHHHHHHHHH
T ss_pred cEEEeCHHHHHHHHHhC
Confidence 13568899999888753
No 143
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.42 E-value=1.2e-12 Score=139.06 Aligned_cols=197 Identities=22% Similarity=0.326 Sum_probs=127.0
Q ss_pred hhccccChHHHHHHHHHHHHHHH-------ccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccc
Q 003094 529 LHKRVIGQDEAVKAISRAIRRAR-------VGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFM 601 (848)
Q Consensus 529 l~~~vigq~~~~~~l~~~~~~~~-------~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~ 601 (848)
.+++++|+++++..+.+...... .++.. +. +++|+||||||||+++++|+..+ ..+++.+++..+.
T Consensus 38 ~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~---~~-gvll~Gp~GtGKTtl~~~i~~~~---~~~~i~~~~~~~~ 110 (278)
T 1iy2_A 38 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARI---PK-GVLLVGPPGVGKTHLARAVAGEA---RVPFITASGSDFV 110 (278)
T ss_dssp CGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCC---CC-EEEEECCTTSSHHHHHHHHHHHT---TCCEEEEEHHHHH
T ss_pred CHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCC---CC-eEEEECCCcChHHHHHHHHHHHc---CCCEEEecHHHHH
Confidence 35678898888888777665431 12222 22 38999999999999999999987 4678888876653
Q ss_pred cccchhcccCCCCCCcccc--cccchhHHHHcCCCeEEEEcCCCcCC--------------hHHHHHHHhhhcCcEEEcC
Q 003094 602 ERHTVSKLIGSPPGYVGYT--EGGQLTEAVRRRPYTVVLFDEIEKAH--------------PDVFNMMLQILEDGRLTDS 665 (848)
Q Consensus 602 ~~~~~~~l~g~~~g~~g~~--~~~~l~~~~~~~~~~Vl~lDEid~l~--------------~~~~~~Ll~~le~g~~~~~ 665 (848)
.. +.+.. ....+++......++++|+||++.+. ...++.++..|+.++-
T Consensus 111 ~~------------~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~--- 175 (278)
T 1iy2_A 111 EM------------FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK--- 175 (278)
T ss_dssp HS------------TTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCT---
T ss_pred HH------------HhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCC---
Confidence 21 11111 11234455554567899999998652 2345666666665431
Q ss_pred CCceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhh--ccCeEEEcCCCCHH
Q 003094 666 KGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLN--RLDEMIVFRQLTKL 743 (848)
Q Consensus 666 ~g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~--R~d~~i~f~~l~~~ 743 (848)
...+++++++|... .+++++++ ||+..+.|++++.+
T Consensus 176 ------~~~~i~~a~t~~p~------------------------------------~ld~~l~r~~rf~~~i~i~~p~~~ 213 (278)
T 1iy2_A 176 ------DTAIVVMAATNRPD------------------------------------ILDPALLRPGRFDRQIAIDAPDVK 213 (278)
T ss_dssp ------TCCEEEEEEESCTT------------------------------------SSCHHHHSTTSSCCEEECCCCCHH
T ss_pred ------CCCEEEEEecCCch------------------------------------hCCHhHcCCCcCCeEEEeCCcCHH
Confidence 13467777887432 25677775 89999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCeEeecHHH-HHHHHHccCCCCCCchHHHHHHHHHHHHH
Q 003094 744 EVKEIADIMLKEVFDRLKTKDIELQVTERF-RERVVEEGYNPSYGARPLRRAIMRLLEDS 802 (848)
Q Consensus 744 el~~I~~~~l~~~~~~~~~~~~~l~i~~~a-~~~l~~~~~~~~~g~r~L~~~i~~~l~~~ 802 (848)
+..+|+...+.. . .+++++ +..++. ..+.+..++|++++++....+
T Consensus 214 ~r~~il~~~~~~---------~--~~~~~~~~~~la~--~~~G~~~~dl~~l~~~a~~~a 260 (278)
T 1iy2_A 214 GREQILRIHARG---------K--PLAEDVDLALLAK--RTPGFVGADLENLLNEAALLA 260 (278)
T ss_dssp HHHHHHHHHHTT---------S--CBCTTCCHHHHHH--TCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcc---------C--CCCcccCHHHHHH--HcCCCCHHHHHHHHHHHHHHH
Confidence 999998755421 1 233333 455655 223334478888888666543
No 144
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.41 E-value=9.7e-12 Score=135.61 Aligned_cols=195 Identities=18% Similarity=0.291 Sum_probs=127.5
Q ss_pred hccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhcc
Q 003094 530 HKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 609 (848)
Q Consensus 530 ~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l 609 (848)
.+.++||+.+++.+...+...... ..+..+++|+||||+|||++++++|..+ +.++.......+.
T Consensus 24 l~~~~g~~~~~~~l~~~i~~~~~~----~~~~~~~ll~Gp~G~GKTTLa~~ia~~l---~~~~~~~sg~~~~-------- 88 (334)
T 1in4_A 24 LDEFIGQENVKKKLSLALEAAKMR----GEVLDHVLLAGPPGLGKTTLAHIIASEL---QTNIHVTSGPVLV-------- 88 (334)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHH----TCCCCCEEEESSTTSSHHHHHHHHHHHH---TCCEEEEETTTCC--------
T ss_pred HHHccCcHHHHHHHHHHHHHHHhc----CCCCCeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEechHhc--------
Confidence 456889999999888888754322 2233469999999999999999999987 3333322221110
Q ss_pred cCCCCCCcccccccchhHHHH-cCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEc-----CCCce--eecCCeEEEEec
Q 003094 610 IGSPPGYVGYTEGGQLTEAVR-RRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTD-----SKGRT--VDFKNTLLIMTS 681 (848)
Q Consensus 610 ~g~~~g~~g~~~~~~l~~~~~-~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~-----~~g~~--v~~~~~iiI~ts 681 (848)
....+..... .....|+|+||++.+.+.+++.|+..++.+.... ...+. .....+.++.++
T Consensus 89 -----------~~~~l~~~~~~~~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at 157 (334)
T 1in4_A 89 -----------KQGDMAAILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGAT 157 (334)
T ss_dssp -----------SHHHHHHHHHHCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEEE
T ss_pred -----------CHHHHHHHHHHccCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEec
Confidence 0112222222 2356799999999999999999998887653210 00011 112344555555
Q ss_pred CCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHHHHHHHHHHHHh
Q 003094 682 NVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLK 761 (848)
Q Consensus 682 N~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~~~l~~~~~~~~ 761 (848)
+... .+++.+++||...+.|++++.+++.+|+......
T Consensus 158 ~~~~------------------------------------~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~------ 195 (334)
T 1in4_A 158 TRSG------------------------------------LLSSPLRSRFGIILELDFYTVKELKEIIKRAASL------ 195 (334)
T ss_dssp SCGG------------------------------------GSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHH------
T ss_pred CCcc------------------------------------cCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHH------
Confidence 4221 2678899999778999999999999999776543
Q ss_pred cCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHHHH
Q 003094 762 TKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRL 798 (848)
Q Consensus 762 ~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~ 798 (848)
.+ +.++++++.+|++.. ..+.|.+.+.++++
T Consensus 196 -~~--~~~~~~~~~~ia~~~---~G~~R~a~~ll~~~ 226 (334)
T 1in4_A 196 -MD--VEIEDAAAEMIAKRS---RGTPRIAIRLTKRV 226 (334)
T ss_dssp -TT--CCBCHHHHHHHHHTS---TTCHHHHHHHHHHH
T ss_pred -cC--CCcCHHHHHHHHHhc---CCChHHHHHHHHHH
Confidence 12 458999999999842 24456666666544
No 145
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.41 E-value=9.4e-13 Score=141.08 Aligned_cols=145 Identities=14% Similarity=0.243 Sum_probs=103.4
Q ss_pred ChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcC---CCCceEEecccccccccchhcccC
Q 003094 535 GQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFG---SEEAMIRLDMSEFMERHTVSKLIG 611 (848)
Q Consensus 535 gq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~---~~~~~i~i~~~~~~~~~~~~~l~g 611 (848)
||+++++.+.+.++.. + .+++||+||||+|||++|+++++.+.. ....++.++.+.
T Consensus 1 g~~~~~~~L~~~i~~~--------~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~------------ 59 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS--------E-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG------------ 59 (305)
T ss_dssp ---CHHHHHHHHHHTC--------S-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS------------
T ss_pred ChHHHHHHHHHHHHCC--------C-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc------------
Confidence 6888888888887642 2 357999999999999999999986311 123444444321
Q ss_pred CCCCCcccccccchhHHHHcCC----CeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCchh
Q 003094 612 SPPGYVGYTEGGQLTEAVRRRP----YTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSV 687 (848)
Q Consensus 612 ~~~g~~g~~~~~~l~~~~~~~~----~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~ 687 (848)
...+.+..+.+.+.+...| +.|+||||+|.++.+.+|.|++.||+. +.+++||++||....
T Consensus 60 ---~~~~id~ir~li~~~~~~p~~~~~kvviIdead~lt~~a~naLLk~LEep-----------~~~t~fIl~t~~~~k- 124 (305)
T 2gno_A 60 ---ENIGIDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQQAANAFLKALEEP-----------PEYAVIVLNTRRWHY- 124 (305)
T ss_dssp ---SCBCHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCHHHHHHTHHHHHSC-----------CTTEEEEEEESCGGG-
T ss_pred ---CCCCHHHHHHHHHHHhhccccCCceEEEeccHHHhCHHHHHHHHHHHhCC-----------CCCeEEEEEECChHh-
Confidence 0122222233444444433 579999999999999999999999983 368899999874332
Q ss_pred hhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHHHHH
Q 003094 688 IEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIML 753 (848)
Q Consensus 688 i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~~~l 753 (848)
+.|.+.+| ++.|+|++.+++.+.+...+
T Consensus 125 -----------------------------------l~~tI~SR---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 125 -----------------------------------LLPTIKSR---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp -----------------------------------SCHHHHTT---SEEEECCCCHHHHHHHHHHH
T ss_pred -----------------------------------ChHHHHce---eEeCCCCCHHHHHHHHHHHh
Confidence 56889999 89999999999999887665
No 146
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.39 E-value=6.9e-13 Score=147.60 Aligned_cols=220 Identities=15% Similarity=0.143 Sum_probs=139.5
Q ss_pred hccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcC------CCCceEEecccccccc
Q 003094 530 HKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFG------SEEAMIRLDMSEFMER 603 (848)
Q Consensus 530 ~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~------~~~~~i~i~~~~~~~~ 603 (848)
.+.++|++..++.+...+.....+ ....+++|+||||||||++++.+++.+.. .+.+++.+||......
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~~-----~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 92 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALRG-----EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETP 92 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTSS-----CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHcC-----CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCH
Confidence 367999999999888877543111 12235999999999999999999988732 2677889998765432
Q ss_pred cc----hhcccCCCCCCcccccc---cchhHHHHcC-CCeEEEEcCCCcCChH--HHHHHHhhhcCcEEEcCCCceeecC
Q 003094 604 HT----VSKLIGSPPGYVGYTEG---GQLTEAVRRR-PYTVVLFDEIEKAHPD--VFNMMLQILEDGRLTDSKGRTVDFK 673 (848)
Q Consensus 604 ~~----~~~l~g~~~g~~g~~~~---~~l~~~~~~~-~~~Vl~lDEid~l~~~--~~~~Ll~~le~g~~~~~~g~~v~~~ 673 (848)
.. +..-+|......|.... ..+...+... .+.||||||+|.+... .++.|+.+++...... ...
T Consensus 93 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~------~~~ 166 (387)
T 2v1u_A 93 YRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELG------DRV 166 (387)
T ss_dssp HHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC----------
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcC------CCc
Confidence 21 11112332222232211 2233334333 3569999999999775 6666666654311000 024
Q ss_pred CeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCe-EEEcCCCCHHHHHHHHHHH
Q 003094 674 NTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDE-MIVFRQLTKLEVKEIADIM 752 (848)
Q Consensus 674 ~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~-~i~f~~l~~~el~~I~~~~ 752 (848)
++++|++||.... ...+.+.+.+|+.. .+.|+||+.+++.+|+...
T Consensus 167 ~~~~I~~t~~~~~---------------------------------~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~ 213 (387)
T 2v1u_A 167 WVSLVGITNSLGF---------------------------------VENLEPRVKSSLGEVELVFPPYTAPQLRDILETR 213 (387)
T ss_dssp -CEEEEECSCSTT---------------------------------SSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHH
T ss_pred eEEEEEEECCCch---------------------------------HhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHH
Confidence 6788899874321 01256888899975 8999999999999999877
Q ss_pred HHHHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHHHHHH
Q 003094 753 LKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLE 800 (848)
Q Consensus 753 l~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~l~ 800 (848)
+... + ....+++++++.+.......+++.|.+.+.++....
T Consensus 214 ~~~~---~----~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~ 254 (387)
T 2v1u_A 214 AEEA---F----NPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGE 254 (387)
T ss_dssp HHHH---B----CTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred HHhh---c----cCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 7531 1 123478889999988644445667777666665543
No 147
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.37 E-value=7.6e-13 Score=131.48 Aligned_cols=161 Identities=19% Similarity=0.271 Sum_probs=107.5
Q ss_pred HHHHhhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcC-------CCCceEEecc
Q 003094 525 MEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFG-------SEEAMIRLDM 597 (848)
Q Consensus 525 l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~-------~~~~~i~i~~ 597 (848)
+.+..++.++|++..++.+...+.. ....+++|+||||||||++|+.+++.+.. .+.+++.+++
T Consensus 16 ~~~~~~~~~~g~~~~~~~l~~~l~~---------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (195)
T 1jbk_A 16 AEQGKLDPVIGRDEEIRRTIQVLQR---------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDM 86 (195)
T ss_dssp HHTTCSCCCCSCHHHHHHHHHHHTS---------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECH
T ss_pred HhhccccccccchHHHHHHHHHHhc---------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeH
Confidence 3445567899999998888777642 11245899999999999999999998743 2566777777
Q ss_pred cccccccchhcccCCCCCCccccc--ccchhHHH-HcCCCeEEEEcCCCcCC--------hHHHHHHHhhhcCcEEEcCC
Q 003094 598 SEFMERHTVSKLIGSPPGYVGYTE--GGQLTEAV-RRRPYTVVLFDEIEKAH--------PDVFNMMLQILEDGRLTDSK 666 (848)
Q Consensus 598 ~~~~~~~~~~~l~g~~~g~~g~~~--~~~l~~~~-~~~~~~Vl~lDEid~l~--------~~~~~~Ll~~le~g~~~~~~ 666 (848)
..+.... .+.+... ...+...+ +...+.||||||+|.+. ..+++.|..+++++
T Consensus 87 ~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~~------ 150 (195)
T 1jbk_A 87 GALVAGA----------KYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARG------ 150 (195)
T ss_dssp HHHHTTT----------CSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHTT------
T ss_pred HHHhccC----------CccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhccC------
Confidence 6553210 1111111 01222222 34556799999999995 45688888888763
Q ss_pred CceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHH
Q 003094 667 GRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVK 746 (848)
Q Consensus 667 g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~ 746 (848)
++.+|+++|.... .....+++.+++||+ .+.|++++.++..
T Consensus 151 -------~~~~i~~~~~~~~-------------------------------~~~~~~~~~l~~r~~-~i~~~~p~~~~~~ 191 (195)
T 1jbk_A 151 -------ELHCVGATTLDEY-------------------------------RQYIEKDAALERRFQ-KVFVAEPSVEDTI 191 (195)
T ss_dssp -------SCCEEEEECHHHH-------------------------------HHHTTTCHHHHTTEE-EEECCCCCHHHHH
T ss_pred -------CeEEEEeCCHHHH-------------------------------HHHHhcCHHHHHHhc-eeecCCCCHHHHH
Confidence 4567888762110 000124789999995 7999999999988
Q ss_pred HHH
Q 003094 747 EIA 749 (848)
Q Consensus 747 ~I~ 749 (848)
+|+
T Consensus 192 ~il 194 (195)
T 1jbk_A 192 AIL 194 (195)
T ss_dssp TTC
T ss_pred HHh
Confidence 764
No 148
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.37 E-value=9.9e-13 Score=148.68 Aligned_cols=177 Identities=18% Similarity=0.271 Sum_probs=120.5
Q ss_pred eEEEeecCCcchHHHHHHHHHHHhcCC--CCceEEecccccccccchhcccCCCCCCcccccccchhHHHHcCCCeEEEE
Q 003094 562 ASFIFSGPTGVGKSELAKALAAYYFGS--EEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLF 639 (848)
Q Consensus 562 ~~lLl~Gp~GtGKT~lA~~la~~l~~~--~~~~i~i~~~~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~Vl~l 639 (848)
.+++|+||||||||++|+++++.+... +.+++.+++..+.... ...+.. .....+....+ ....||||
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~-~~~~~~--------~~~~~~~~~~~-~~~~vL~I 200 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDL-VDSMKE--------GKLNEFREKYR-KKVDILLI 200 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHH-HHHHHT--------TCHHHHHHHHT-TTCSEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHH-HHHHHc--------ccHHHHHHHhc-CCCCEEEE
Confidence 459999999999999999999987433 6678888887764321 110000 00011111111 25679999
Q ss_pred cCCCcCCh--HHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHH
Q 003094 640 DEIEKAHP--DVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTE 717 (848)
Q Consensus 640 DEid~l~~--~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 717 (848)
||++.+.. ..++.|+..++.-. ..+..+|++|+.....+
T Consensus 201 DEi~~l~~~~~~q~~l~~~l~~l~----------~~~~~iIitt~~~~~~l----------------------------- 241 (440)
T 2z4s_A 201 DDVQFLIGKTGVQTELFHTFNELH----------DSGKQIVICSDREPQKL----------------------------- 241 (440)
T ss_dssp ECGGGGSSCHHHHHHHHHHHHHHH----------TTTCEEEEEESSCGGGC-----------------------------
T ss_pred eCcccccCChHHHHHHHHHHHHHH----------HCCCeEEEEECCCHHHH-----------------------------
Confidence 99999986 78888888875411 02235666766433211
Q ss_pred HHHhhcChhhhhccC--eEEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHH
Q 003094 718 ELKQYFRPEFLNRLD--EMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAI 795 (848)
Q Consensus 718 ~l~~~~~~~ll~R~d--~~i~f~~l~~~el~~I~~~~l~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i 795 (848)
..+.+.|++||. .++.|++++.+++..|+...+... + +.++++++++|+... .++.|.+.+++
T Consensus 242 ---~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~-------~--~~i~~e~l~~la~~~---~gn~R~l~~~L 306 (440)
T 2z4s_A 242 ---SEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIE-------H--GELPEEVLNFVAENV---DDNLRRLRGAI 306 (440)
T ss_dssp ---SSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHH-------T--CCCCTTHHHHHHHHC---CSCHHHHHHHH
T ss_pred ---HHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHc-------C--CCCCHHHHHHHHHhc---CCCHHHHHHHH
Confidence 125688999995 689999999999999998777531 2 458899999999742 46889999998
Q ss_pred HHHHHHH
Q 003094 796 MRLLEDS 802 (848)
Q Consensus 796 ~~~l~~~ 802 (848)
++++..+
T Consensus 307 ~~~~~~a 313 (440)
T 2z4s_A 307 IKLLVYK 313 (440)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877654
No 149
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.36 E-value=4.4e-12 Score=138.37 Aligned_cols=181 Identities=18% Similarity=0.192 Sum_probs=128.7
Q ss_pred ChHHHHHHHHHhccCCCCC-cEEECCCCCcHHHHHHHHHHHhhCCCCCCC--------------CCCceEEEEeCCcccc
Q 003094 202 RQPQIERVVQILGRRTKNN-PCLIGEPGVGKTAIAEGLAQRIASGDVPDT--------------IEGKKVITLDMGLLVA 266 (848)
Q Consensus 202 ~~~~~~~l~~~l~~~~~~~-iLL~GppGtGKT~la~~la~~l~~~~~~~~--------------l~~~~v~~~~~~~l~~ 266 (848)
+++.++.+...+..+...| +||+||||+|||++|+.+|+.+........ .....++.++...-
T Consensus 7 ~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~-- 84 (334)
T 1a5t_A 7 LRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG-- 84 (334)
T ss_dssp GHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT--
T ss_pred hHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecccc--
Confidence 4567778888888777666 889999999999999999999975432110 01133555554310
Q ss_pred cccccchHHHHHHHHHHHHHh----CCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcC--CceEEEEeeChHHHHhh
Q 003094 267 GTKYRGEFEERLKKLMEEIKQ----SDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR--GELQCIGATTLDEYRKH 340 (848)
Q Consensus 267 ~~~~~g~~~~~l~~l~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~atn~~~~~~~ 340 (848)
.+.. ....++.+++.+.. ++..|++|||+|.+. .+..+.|+..++. .++++|.+|+.++
T Consensus 85 -~~~~--~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~--------~~a~naLLk~lEep~~~~~~Il~t~~~~---- 149 (334)
T 1a5t_A 85 -KNTL--GVDAVREVTEKLNEHARLGGAKVVWVTDAALLT--------DAAANALLKTLEEPPAETWFFLATREPE---- 149 (334)
T ss_dssp -CSSB--CHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBC--------HHHHHHHHHHHTSCCTTEEEEEEESCGG----
T ss_pred -CCCC--CHHHHHHHHHHHhhccccCCcEEEEECchhhcC--------HHHHHHHHHHhcCCCCCeEEEEEeCChH----
Confidence 1111 12345566666542 456899999999994 3467888888884 4588888888765
Q ss_pred hhcChhhhcccCCCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCChhhHHHHHHHH
Q 003094 341 IEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEA 415 (848)
Q Consensus 341 ~~~d~al~~Rf~~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~p~~a~~ll~~a 415 (848)
.+.+.+.+|+..+.|++|+.++..+++.... .++++++..++..+.|. ++.++.+++..
T Consensus 150 -~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~---------~~~~~~~~~l~~~s~G~------~r~a~~~l~~~ 208 (334)
T 1a5t_A 150 -RLLATLRSRCRLHYLAPPPEQYAVTWLSREV---------TMSQDALLAALRLSAGS------PGAALALFQGD 208 (334)
T ss_dssp -GSCHHHHTTSEEEECCCCCHHHHHHHHHHHC---------CCCHHHHHHHHHHTTTC------HHHHHHTTSSH
T ss_pred -hCcHHHhhcceeeeCCCCCHHHHHHHHHHhc---------CCCHHHHHHHHHHcCCC------HHHHHHHhccc
Confidence 6899999999999999999999888776432 56888888888887664 45576666554
No 150
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.35 E-value=9e-12 Score=152.70 Aligned_cols=183 Identities=23% Similarity=0.280 Sum_probs=131.1
Q ss_pred CCccCChHHHHHHHHHhccC---------CCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCccccc
Q 003094 197 DPVVGRQPQIERVVQILGRR---------TKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAG 267 (848)
Q Consensus 197 d~iiG~~~~~~~l~~~l~~~---------~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~ 267 (848)
+.++|+++.++.+...+... +..++||+||||||||++|+++++.+... +.+++.++++.+...
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~-------~~~~i~i~~~~~~~~ 630 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT-------EEAMIRIDMTEYMEK 630 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSS-------GGGEEEECTTTCCSS
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC-------CCcEEEEechhccch
Confidence 46899999999887776431 12478999999999999999999998653 467899998876532
Q ss_pred cc----------ccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCC-------------
Q 003094 268 TK----------YRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARG------------- 324 (848)
Q Consensus 268 ~~----------~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~------------- 324 (848)
.. |.|.. ....+.+.++...+.+|||||++.+ ..++++.|+++++.+
T Consensus 631 ~~~s~l~g~~~~~~G~~--~~g~l~~~~~~~~~~vl~lDEi~~l--------~~~~~~~Ll~~l~~~~~~~~~g~~vd~~ 700 (854)
T 1qvr_A 631 HAVSRLIGAPPGYVGYE--EGGQLTEAVRRRPYSVILFDEIEKA--------HPDVFNILLQILDDGRLTDSHGRTVDFR 700 (854)
T ss_dssp GGGGGC----------------CHHHHHHHCSSEEEEESSGGGS--------CHHHHHHHHHHHTTTEECCSSSCCEECT
T ss_pred hHHHHHcCCCCCCcCcc--ccchHHHHHHhCCCeEEEEeccccc--------CHHHHHHHHHHhccCceECCCCCEeccC
Confidence 11 11111 1123445555666789999999988 356899999999855
Q ss_pred ceEEEEeeChHH---------------HHhh------hhcChhhhcccC-CCcCCCCCHHHHHHHHHHHHHHHhhhh---
Q 003094 325 ELQCIGATTLDE---------------YRKH------IEKDPALERRFQ-PVKVPEPSVDETIQILKGLRERYEIHH--- 379 (848)
Q Consensus 325 ~v~vI~atn~~~---------------~~~~------~~~d~al~~Rf~-~i~~~~p~~~e~~~Il~~~~~~~~~~~--- 379 (848)
++++|+|||... .... -...|.|.+||+ .+.|.+|+.++...|++.++.++....
T Consensus 701 ~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~~~ 780 (854)
T 1qvr_A 701 NTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEK 780 (854)
T ss_dssp TEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 467999999621 1111 135789999996 788899999999999998877654321
Q ss_pred --cCCCChHHHHHHHhhhh
Q 003094 380 --KLRYTDEALVSAAQLSY 396 (848)
Q Consensus 380 --~~~~s~~~l~~l~~~s~ 396 (848)
.+.++++++..++...-
T Consensus 781 ~~~~~~~~~a~~~L~~~~~ 799 (854)
T 1qvr_A 781 RISLELTEAAKDFLAERGY 799 (854)
T ss_dssp TCEEEECHHHHHHHHHHHC
T ss_pred CceEEECHHHHHHHHHcCC
Confidence 35689999999887643
No 151
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.30 E-value=2.5e-12 Score=122.44 Aligned_cols=134 Identities=16% Similarity=0.106 Sum_probs=91.7
Q ss_pred CccCChHHHHHHHHHhcc--CCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccccccccchHH
Q 003094 198 PVVGRQPQIERVVQILGR--RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFE 275 (848)
Q Consensus 198 ~iiG~~~~~~~l~~~l~~--~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~~~~g~~~ 275 (848)
+++|+.+.++++.+.+.. ....++||+||||||||++|+++++..... +.+++ ++++.+.....
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~-------~~~~v-~~~~~~~~~~~------ 67 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNA-------QGEFV-YRELTPDNAPQ------ 67 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTT-------TSCCE-EEECCTTTSSC------
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCcc-------CCCEE-EECCCCCcchh------
Confidence 578999999988887653 567889999999999999999999865432 45677 88887664311
Q ss_pred HHHHHHHHHHHhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhc--CCceEEEEeeChHHHH--hhhhcChhhhccc
Q 003094 276 ERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLA--RGELQCIGATTLDEYR--KHIEKDPALERRF 351 (848)
Q Consensus 276 ~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~--~~~v~vI~atn~~~~~--~~~~~d~al~~Rf 351 (848)
....+..+ .+.+|||||+|.+. .+.+..|...+. ...+.+|++||.+... ..-..++.+..|+
T Consensus 68 --~~~~~~~a---~~g~l~ldei~~l~--------~~~q~~Ll~~l~~~~~~~~~I~~t~~~~~~~~~~~~~~~~L~~rl 134 (145)
T 3n70_A 68 --LNDFIALA---QGGTLVLSHPEHLT--------REQQYHLVQLQSQEHRPFRLIGIGDTSLVELAASNHIIAELYYCF 134 (145)
T ss_dssp --HHHHHHHH---TTSCEEEECGGGSC--------HHHHHHHHHHHHSSSCSSCEEEEESSCHHHHHHHSCCCHHHHHHH
T ss_pred --hhcHHHHc---CCcEEEEcChHHCC--------HHHHHHHHHHHhhcCCCEEEEEECCcCHHHHHHcCCCCHHHHHHh
Confidence 22333433 34599999999984 345666666664 3457889999865321 1224567777787
Q ss_pred C--CCcCCC
Q 003094 352 Q--PVKVPE 358 (848)
Q Consensus 352 ~--~i~~~~ 358 (848)
. .|.+|+
T Consensus 135 ~~~~i~lPp 143 (145)
T 3n70_A 135 AMTQIACLP 143 (145)
T ss_dssp HHHEEECCC
T ss_pred cCCEEeCCC
Confidence 5 455554
No 152
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.29 E-value=7.8e-12 Score=123.60 Aligned_cols=154 Identities=21% Similarity=0.261 Sum_probs=101.6
Q ss_pred HHHHHhhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcC-------CCCceEEec
Q 003094 524 KMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFG-------SEEAMIRLD 596 (848)
Q Consensus 524 ~l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~-------~~~~~i~i~ 596 (848)
++++..++.++|++..++.+.+.+.. ....+++|+||||||||++|+.+++.+.. .+.+++.++
T Consensus 15 ~~~~~~~~~~~g~~~~~~~l~~~l~~---------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (187)
T 2p65_A 15 LARAGKLDPVIGRDTEIRRAIQILSR---------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLD 85 (187)
T ss_dssp HHHTTCSCCCCSCHHHHHHHHHHHTS---------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEEC
T ss_pred HHhccccchhhcchHHHHHHHHHHhC---------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEe
Confidence 34455677899999998888777642 11246899999999999999999998744 256677777
Q ss_pred ccccccccchhcccCCCCCCccccc--ccchhHHHHcC-CCeEEEEcCCCcCC---------hHHHHHHHhhhcCcEEEc
Q 003094 597 MSEFMERHTVSKLIGSPPGYVGYTE--GGQLTEAVRRR-PYTVVLFDEIEKAH---------PDVFNMMLQILEDGRLTD 664 (848)
Q Consensus 597 ~~~~~~~~~~~~l~g~~~g~~g~~~--~~~l~~~~~~~-~~~Vl~lDEid~l~---------~~~~~~Ll~~le~g~~~~ 664 (848)
+..+.... .+.+... ...+...+... .+.||||||++.+. .++++.|..++++
T Consensus 86 ~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~----- 150 (187)
T 2p65_A 86 LSSLIAGA----------KYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLAR----- 150 (187)
T ss_dssp HHHHHHHC----------CSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHHT-----
T ss_pred HHHhhcCC----------CchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccccchHHHHHHHHHHhc-----
Confidence 65543210 0111110 12223333333 56799999999997 6788888888876
Q ss_pred CCCceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCC
Q 003094 665 SKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLT 741 (848)
Q Consensus 665 ~~g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~ 741 (848)
.++++|+++|.... .....++++|++||+ .+.+++++
T Consensus 151 --------~~~~ii~~~~~~~~-------------------------------~~~~~~~~~l~~R~~-~i~i~~p~ 187 (187)
T 2p65_A 151 --------GELRCIGATTVSEY-------------------------------RQFIEKDKALERRFQ-QILVEQPS 187 (187)
T ss_dssp --------TCSCEEEEECHHHH-------------------------------HHHTTTCHHHHHHEE-EEECCSCC
T ss_pred --------CCeeEEEecCHHHH-------------------------------HHHHhccHHHHHhcC-cccCCCCC
Confidence 34568888872110 000125789999995 58887764
No 153
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.27 E-value=7.6e-11 Score=138.84 Aligned_cols=214 Identities=18% Similarity=0.261 Sum_probs=136.7
Q ss_pred hhhhhcCCCCCccCChHHHHHHHHHhccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccc-
Q 003094 188 TKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVA- 266 (848)
Q Consensus 188 ~~~~~~~~ld~iiG~~~~~~~l~~~l~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~- 266 (848)
...++|..+++++|++..++.+...+... .+++|+||||||||+++++++..+..... ..+.+.......
T Consensus 32 ~~~~rp~~l~~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l~~~~~-------~~~~~~~~~~~~~ 102 (604)
T 3k1j_A 32 EIEVPEKLIDQVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELLPTETL-------EDILVFPNPEDEN 102 (604)
T ss_dssp GSCCCSSHHHHCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTSCCSSC-------EEEEEECCTTCTT
T ss_pred cccccccccceEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccCCcccC-------CeEEEeCCccccc
Confidence 34567788999999999999988877754 69999999999999999999998753211 111111110000
Q ss_pred -----------------------------------------------------cccccchHHHHHHHHHH----------
Q 003094 267 -----------------------------------------------------GTKYRGEFEERLKKLME---------- 283 (848)
Q Consensus 267 -----------------------------------------------------~~~~~g~~~~~l~~l~~---------- 283 (848)
+.............++.
T Consensus 103 ~p~i~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~~g 182 (604)
T 3k1j_A 103 MPRIKTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQSG 182 (604)
T ss_dssp SCEEEEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC---
T ss_pred CCcEEEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhhcC
Confidence 00000000000111111
Q ss_pred -------------HHHhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCC-----------------------ceE
Q 003094 284 -------------EIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARG-----------------------ELQ 327 (848)
Q Consensus 284 -------------~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~-----------------------~v~ 327 (848)
.+....+.+|||||++.+. ...++.|++.++.+ .+.
T Consensus 183 ~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~l~--------~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~ 254 (604)
T 3k1j_A 183 GLGTPAHERVEPGMIHRAHKGVLFIDEIATLS--------LKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFV 254 (604)
T ss_dssp -CCCCGGGGEECCHHHHTTTSEEEETTGGGSC--------HHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCE
T ss_pred CccccccccccCceeeecCCCEEEEechhhCC--------HHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEE
Confidence 1122345699999999983 44777887777622 467
Q ss_pred EEEeeChHHHHhhhhcChhhhcccC----CCcCCCC---CHHHHHHHHHHHHHHHhhh-hcCCCChHHHHHHHhhhhccc
Q 003094 328 CIGATTLDEYRKHIEKDPALERRFQ----PVKVPEP---SVDETIQILKGLRERYEIH-HKLRYTDEALVSAAQLSYQYI 399 (848)
Q Consensus 328 vI~atn~~~~~~~~~~d~al~~Rf~----~i~~~~p---~~~e~~~Il~~~~~~~~~~-~~~~~s~~~l~~l~~~s~~~~ 399 (848)
+|++||+.... .++++|.+||. .+.|+.. +.+....+++.+....... ....++++++..+++.+.++.
T Consensus 255 vI~atn~~~~~---~l~~~l~~R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~ 331 (604)
T 3k1j_A 255 LVAAGNLDTVD---KMHPALRSRIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRA 331 (604)
T ss_dssp EEEEECHHHHH---HSCHHHHHHHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTT
T ss_pred EEEecCHHHHh---hcCHHHHHHhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhh
Confidence 99999987432 58999999995 3444332 4555666666555544322 235789999999998887776
Q ss_pred ccCC----ChhhHHHHHHHHhhHHHH
Q 003094 400 SDRF----LPDKAIDLIDEAGSRVRL 421 (848)
Q Consensus 400 ~~~~----~p~~a~~ll~~a~~~~~~ 421 (848)
+.+. .++.+.++++.|...+..
T Consensus 332 g~r~~l~~~~R~l~~llr~A~~~A~~ 357 (604)
T 3k1j_A 332 GRKGHLTLRLRDLGGIVRAAGDIAVK 357 (604)
T ss_dssp CSTTEEECCHHHHHHHHHHHHHHHHH
T ss_pred ccccccccCHHHHHHHHHHHHHHHHh
Confidence 6654 577778888877665544
No 154
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.27 E-value=9.7e-12 Score=138.10 Aligned_cols=215 Identities=13% Similarity=0.126 Sum_probs=134.9
Q ss_pred hccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCC---CCceEEecccccccccc-
Q 003094 530 HKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGS---EEAMIRLDMSEFMERHT- 605 (848)
Q Consensus 530 ~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~---~~~~i~i~~~~~~~~~~- 605 (848)
.+.++|++..++.+...+.....+ ....+++|+||+|||||++++.+++.+... +..++.++|........
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~~-----~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 93 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYRE-----EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRV 93 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGGT-----CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcC-----CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHH
Confidence 357899999998888777643222 112358999999999999999999887432 56788888865432111
Q ss_pred ---hhcccCCCCCCcccccc---cchhHHHHcCC-CeEEEEcCCCcCC----hHHHHHHHhhhcCcEEEcCCCceeecCC
Q 003094 606 ---VSKLIGSPPGYVGYTEG---GQLTEAVRRRP-YTVVLFDEIEKAH----PDVFNMMLQILEDGRLTDSKGRTVDFKN 674 (848)
Q Consensus 606 ---~~~l~g~~~g~~g~~~~---~~l~~~~~~~~-~~Vl~lDEid~l~----~~~~~~Ll~~le~g~~~~~~g~~v~~~~ 674 (848)
+..-+|......+.... ..+...+.... +.||||||++.+. .+++..|+..+++. ...+
T Consensus 94 ~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~----------~~~~ 163 (386)
T 2qby_A 94 LADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEV----------NKSK 163 (386)
T ss_dssp HHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSC----------CC--
T ss_pred HHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhc----------CCCe
Confidence 11112322222222111 22334444433 7899999999885 67888888888642 1135
Q ss_pred eEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccC-eEEEcCCCCHHHHHHHHHHHH
Q 003094 675 TLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLD-EMIVFRQLTKLEVKEIADIML 753 (848)
Q Consensus 675 ~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d-~~i~f~~l~~~el~~I~~~~l 753 (848)
+.+|+++|.... ...+.+.+.+|+. ..+.|+||+.+++.+++...+
T Consensus 164 ~~~I~~~~~~~~---------------------------------~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~ 210 (386)
T 2qby_A 164 ISFIGITNDVKF---------------------------------VDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRA 210 (386)
T ss_dssp EEEEEEESCGGG---------------------------------GGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHH
T ss_pred EEEEEEECCCCh---------------------------------HhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHH
Confidence 678888873221 1124567778885 389999999999999998766
Q ss_pred HHHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHHHHH
Q 003094 754 KEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLL 799 (848)
Q Consensus 754 ~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~l 799 (848)
... .....+++++++++........++.|.+.+.+....
T Consensus 211 ~~~-------~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~ 249 (386)
T 2qby_A 211 QMA-------FKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSG 249 (386)
T ss_dssp HHH-------BCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred Hhh-------ccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 431 112347888888888753322244565555554443
No 155
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.23 E-value=2.7e-11 Score=137.82 Aligned_cols=203 Identities=13% Similarity=0.071 Sum_probs=118.8
Q ss_pred CccCChHHHHHHHHHhccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCccccccc----ccch
Q 003094 198 PVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTK----YRGE 273 (848)
Q Consensus 198 ~iiG~~~~~~~l~~~l~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~~----~~g~ 273 (848)
.++|+++.++.+...+.. ..|+||+||||||||++|+++++.+.. +..+..+.+.- ..... +.+.
T Consensus 23 ~ivGq~~~i~~l~~al~~--~~~VLL~GpPGtGKT~LAraLa~~l~~--------~~~f~~~~~~~-~t~~dL~G~~~~~ 91 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALS--GESVFLLGPPGIAKSLIARRLKFAFQN--------ARAFEYLMTRF-STPEEVFGPLSIQ 91 (500)
T ss_dssp TCSSCHHHHHHHHHHHHH--TCEEEEECCSSSSHHHHHHHGGGGBSS--------CCEEEEECCTT-CCHHHHHCCBC--
T ss_pred hhHHHHHHHHHHHHHHhc--CCeeEeecCchHHHHHHHHHHHHHHhh--------hhHHHHHHHhc-CCHHHhcCcccHH
Confidence 489999999988777664 369999999999999999999997732 23444444431 00000 0110
Q ss_pred HHHHHHHHHHHHHhC---CCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCCc------------eEEEEeeChHHHH
Q 003094 274 FEERLKKLMEEIKQS---DEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGE------------LQCIGATTLDEYR 338 (848)
Q Consensus 274 ~~~~l~~l~~~~~~~---~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~~------------v~vI~atn~~~~~ 338 (848)
.... ...+..+..+ .+.||||||++.+. .+.++.|...++.+. .++|++||+.+..
T Consensus 92 ~~~~-~g~~~~~~~g~l~~~~IL~IDEI~r~~--------~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~ATN~lpe~ 162 (500)
T 3nbx_X 92 ALKD-EGRYERLTSGYLPEAEIVFLDEIWKAG--------PAILNTLLTAINERQFRNGAHVEKIPMRLLVAASNELPEA 162 (500)
T ss_dssp ---------CBCCTTSGGGCSEEEEESGGGCC--------HHHHHHHHHHHHSSEEECSSSEEECCCCEEEEEESSCCCT
T ss_pred HHhh-chhHHhhhccCCCcceeeeHHhHhhhc--------HHHHHHHHHHHHHHhccCCCCcCCcchhhhhhccccCCCc
Confidence 0000 0111111111 24589999999873 457788888876332 2457788753211
Q ss_pred hhhhcChhhhcccC-CCcCCCCCH-HHHHHHHHHHHHHH-------------------hhhhcCCCChHHHHHHHhhhhc
Q 003094 339 KHIEKDPALERRFQ-PVKVPEPSV-DETIQILKGLRERY-------------------EIHHKLRYTDEALVSAAQLSYQ 397 (848)
Q Consensus 339 ~~~~~d~al~~Rf~-~i~~~~p~~-~e~~~Il~~~~~~~-------------------~~~~~~~~s~~~l~~l~~~s~~ 397 (848)
....+++.+||. .+.++.|+. +++..|+....... .....+.++++.+++++.+...
T Consensus 163 --~~~~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v~e~i~~l~~~ 240 (500)
T 3nbx_X 163 --DSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHVFELIFMLRQQ 240 (500)
T ss_dssp --TCTTHHHHTTCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHHHHHHHHHHHH
T ss_pred --cccHHHHHHHHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHHHHHHHHHHHH
Confidence 123469999997 689999987 67788877532110 0122455677777766665521
Q ss_pred c----cccCCChhhHHHHHHHHhhHHHHh
Q 003094 398 Y----ISDRFLPDKAIDLIDEAGSRVRLR 422 (848)
Q Consensus 398 ~----~~~~~~p~~a~~ll~~a~~~~~~~ 422 (848)
. ......++.++.++..|.+.+.+.
T Consensus 241 lr~~r~~~~iS~R~~~~llr~A~A~A~l~ 269 (500)
T 3nbx_X 241 LDKLPDAPYVSDRRWKKAIRLLQASAFFS 269 (500)
T ss_dssp HHHCSSSCCCCHHHHHHHHHHHHHHHHHT
T ss_pred hhcCCCCCccchhHHHHHHHHHHHHHhhc
Confidence 0 011123455666666665555543
No 156
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.22 E-value=1.6e-12 Score=123.43 Aligned_cols=129 Identities=12% Similarity=0.166 Sum_probs=86.8
Q ss_pred CccCChHHHHHHHHHhcc--CCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccccccccchHH
Q 003094 198 PVVGRQPQIERVVQILGR--RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFE 275 (848)
Q Consensus 198 ~iiG~~~~~~~l~~~l~~--~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~~~~g~~~ 275 (848)
+++|+++.++++.+.+.. ....+++|+||||||||++|+++++.. . +++.++++.+... +
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~----------~-~~~~~~~~~~~~~--~----- 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG----------T-PWVSPARVEYLID--M----- 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT----------S-CEECCSSTTHHHH--C-----
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC----------C-CeEEechhhCChH--h-----
Confidence 478999999888887653 567889999999999999999988754 2 6777887765421 1
Q ss_pred HHHHHHHHHHHhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhc---CCceEEEEeeChHHHH-hhhhcChhhhccc
Q 003094 276 ERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLA---RGELQCIGATTLDEYR-KHIEKDPALERRF 351 (848)
Q Consensus 276 ~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~---~~~v~vI~atn~~~~~-~~~~~d~al~~Rf 351 (848)
...++.. ..+.+|||||+|.+. .+.+..|...++ ...+.+|++||.+... ..- .++.+..||
T Consensus 67 --~~~~~~~---a~~~~l~lDei~~l~--------~~~q~~Ll~~l~~~~~~~~~iI~~tn~~~~~~~~~-~~~~L~~rl 132 (143)
T 3co5_A 67 --PMELLQK---AEGGVLYVGDIAQYS--------RNIQTGITFIIGKAERCRVRVIASCSYAAGSDGIS-CEEKLAGLF 132 (143)
T ss_dssp --HHHHHHH---TTTSEEEEEECTTCC--------HHHHHHHHHHHHHHTTTTCEEEEEEEECTTTC--C-HHHHHHHHS
T ss_pred --hhhHHHh---CCCCeEEEeChHHCC--------HHHHHHHHHHHHhCCCCCEEEEEecCCCHHHHHhC-ccHHHHHHh
Confidence 2333443 335699999999984 345666777766 3458899999875321 000 456677787
Q ss_pred CC--CcCCC
Q 003094 352 QP--VKVPE 358 (848)
Q Consensus 352 ~~--i~~~~ 358 (848)
.. |.+|+
T Consensus 133 ~~~~i~lPp 141 (143)
T 3co5_A 133 SESVVRIPP 141 (143)
T ss_dssp SSEEEEECC
T ss_pred cCcEEeCCC
Confidence 64 44544
No 157
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.20 E-value=9e-11 Score=125.66 Aligned_cols=146 Identities=14% Similarity=0.116 Sum_probs=107.4
Q ss_pred CChHHHHHHHHHhccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccccccccchHHHHHHH
Q 003094 201 GRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEERLKK 280 (848)
Q Consensus 201 G~~~~~~~l~~~l~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~~~~g~~~~~l~~ 280 (848)
|+++.++.|...+..+..+++||+||||+|||++++++++.+.. ... ....++.++.+.- .. ....++.
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~--~~~--~~~d~~~l~~~~~-----~~--~id~ir~ 69 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEK--FPP--KASDVLEIDPEGE-----NI--GIDDIRT 69 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHT--SCC--CTTTEEEECCSSS-----CB--CHHHHHH
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCch--hhc--cCCCEEEEcCCcC-----CC--CHHHHHH
Confidence 67888999999988777677899999999999999999986531 111 2345777765421 11 1234566
Q ss_pred HHHHHHh----CCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcC--CceEEEEeeChHHHHhhhhcChhhhcccCCC
Q 003094 281 LMEEIKQ----SDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR--GELQCIGATTLDEYRKHIEKDPALERRFQPV 354 (848)
Q Consensus 281 l~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~atn~~~~~~~~~~d~al~~Rf~~i 354 (848)
+++.+.. ++..|+||||+|.|. ...++.|++.++. ..+.+|.+|+.+. .+.|++++| .+
T Consensus 70 li~~~~~~p~~~~~kvviIdead~lt--------~~a~naLLk~LEep~~~t~fIl~t~~~~-----kl~~tI~SR--~~ 134 (305)
T 2gno_A 70 IKDFLNYSPELYTRKYVIVHDCERMT--------QQAANAFLKALEEPPEYAVIVLNTRRWH-----YLLPTIKSR--VF 134 (305)
T ss_dssp HHHHHTSCCSSSSSEEEEETTGGGBC--------HHHHHHTHHHHHSCCTTEEEEEEESCGG-----GSCHHHHTT--SE
T ss_pred HHHHHhhccccCCceEEEeccHHHhC--------HHHHHHHHHHHhCCCCCeEEEEEECChH-----hChHHHHce--eE
Confidence 6666653 335799999999994 4478899999985 4678888887665 689999999 99
Q ss_pred cCCCCCHHHHHHHHHHHH
Q 003094 355 KVPEPSVDETIQILKGLR 372 (848)
Q Consensus 355 ~~~~p~~~e~~~Il~~~~ 372 (848)
.|++|+.++..+++....
T Consensus 135 ~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 135 RVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp EEECCCCHHHHHHHHHHH
T ss_pred eCCCCCHHHHHHHHHHHh
Confidence 999999999988887654
No 158
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=99.19 E-value=1.1e-10 Score=128.64 Aligned_cols=214 Identities=16% Similarity=0.155 Sum_probs=125.5
Q ss_pred HHHHHHHhhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHH-HHHhcCCCCceEEeccccc
Q 003094 522 LLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKAL-AAYYFGSEEAMIRLDMSEF 600 (848)
Q Consensus 522 l~~l~~~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~l-a~~l~~~~~~~i~i~~~~~ 600 (848)
+..+.+.+.. |+||+.++..+.-++ .|.....+.-.|+||.|+||| ||++|+++ ++.+. ...++...++..
T Consensus 205 ~~~l~~sIap-I~G~e~vK~aLll~L----~GG~~k~rgdihVLL~G~PGt-KS~Lar~i~~~i~p--R~~ft~g~~ss~ 276 (506)
T 3f8t_A 205 LTTFARAIAP-LPGAEEVGKMLALQL----FSCVGKNSERLHVLLAGYPVV-CSEILHHVLDHLAP--RGVYVDLRRTEL 276 (506)
T ss_dssp HHHHHHHHCC-STTCHHHHHHHHHHH----TTCCSSGGGCCCEEEESCHHH-HHHHHHHHHHHTCS--SEEEEEGGGCCH
T ss_pred HHHHHHHhcc-cCCCHHHHHHHHHHH----cCCccccCCceeEEEECCCCh-HHHHHHHHHHHhCC--CeEEecCCCCCc
Confidence 4567778888 999998755554433 333211222237999999999 99999999 87651 222222222110
Q ss_pred ccccchhcccCCCCCCcccccccchhHHHHcCCCeEEEEcCCCcCChHHHHHHHhhhcCcEEEcCCCceeecCCeEEEEe
Q 003094 601 MERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMT 680 (848)
Q Consensus 601 ~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~t 680 (848)
.+ -..+ +.+. .| . ..-.+.+..+.++|+|+|||+++++..|..|++.||+++++.. |. .-..++.+|+|
T Consensus 277 ~g-Lt~s-~r~~-tG-~-----~~~~G~l~LAdgGvl~lDEIn~~~~~~qsaLlEaMEe~~VtI~-G~-~lparf~VIAA 345 (506)
T 3f8t_A 277 TD-LTAV-LKED-RG-W-----ALRAGAAVLADGGILAVDHLEGAPEPHRWALMEAMDKGTVTVD-GI-ALNARCAVLAA 345 (506)
T ss_dssp HH-HSEE-EEES-SS-E-----EEEECHHHHTTTSEEEEECCTTCCHHHHHHHHHHHHHSEEEET-TE-EEECCCEEEEE
T ss_pred cC-ceEE-EEcC-CC-c-----ccCCCeeEEcCCCeeehHhhhhCCHHHHHHHHHHHhCCcEEEC-CE-EcCCCeEEEEE
Confidence 00 0000 1111 11 0 1112344457789999999999999999999999999999877 55 44568999999
Q ss_pred cCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCC-CHHH-H---HHHH-HHHHH
Q 003094 681 SNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQL-TKLE-V---KEIA-DIMLK 754 (848)
Q Consensus 681 sN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l-~~~e-l---~~I~-~~~l~ 754 (848)
+|.-.. |+.+... + .-.+++++++|||-++....+ +.++ . ...+ ...+.
T Consensus 346 ~NP~~~----------yd~~~s~-~--------------~~~Lp~alLDRFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~ 400 (506)
T 3f8t_A 346 INPGEQ----------WPSDPPI-A--------------RIDLDQDFLSHFDLIAFLGVDPRPGEPEEQDTEVPSYTLLR 400 (506)
T ss_dssp ECCCC------------CCSCGG-G--------------GCCSCHHHHTTCSEEEETTC--------------CCHHHHH
T ss_pred eCcccc----------cCCCCCc-c--------------ccCCChHHhhheeeEEEecCCCChhHhhcccCCCCCHHHHH
Confidence 995331 1100000 0 114789999999887665444 2221 1 1111 22333
Q ss_pred HHHHHHhcCCCeEeecHHHHHHHHH
Q 003094 755 EVFDRLKTKDIELQVTERFRERVVE 779 (848)
Q Consensus 755 ~~~~~~~~~~~~l~i~~~a~~~l~~ 779 (848)
++....+.......+++++.++|.+
T Consensus 401 ~yi~~ar~~~~~p~ls~ea~~yI~~ 425 (506)
T 3f8t_A 401 RYLLYAIREHPAPELTEEARKRLEH 425 (506)
T ss_dssp HHHHHHHHHCSCCEECHHHHHHHHH
T ss_pred HHHHHHHhcCCCceeCHHHHHHHHH
Confidence 3333333123456789998888876
No 159
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=99.19 E-value=4.6e-11 Score=115.96 Aligned_cols=78 Identities=13% Similarity=0.106 Sum_probs=72.3
Q ss_pred CchhHHhhhHHhhHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHhhCCCchHHHHHHHcCCChHHHHHHHHHHhccccc
Q 003094 84 GGFVVKAMFERFTEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRTQVIRMVGESTE 162 (848)
Q Consensus 84 ~~~~~~~~~~~~t~~a~~~l~~A~~~A~~~~~~~i~~eHlLlall~~~~~~a~~iL~~~gv~~~~l~~~~~~~~~~~~~ 162 (848)
.++-..+||++||++++++++.|+++|+++|+.+|+|||||+||++++++.+..+|+++|+|++.++..++ .++..+.
T Consensus 14 ~~~~l~~~~~kfT~~a~~aL~~A~~~A~~~~h~~I~~EHLLlaLL~~~~~~a~~iL~~~gvd~~~l~~~l~-~l~~~p~ 91 (171)
T 3zri_A 14 IRIELPTLIAKLNAQSKLALEQAASLCIERQHPEVTLEHYLDVLLDNPLSDVRLVLKQAGLEVDQVKQAIA-STYSREQ 91 (171)
T ss_dssp CCCCHHHHHHHBCHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHTTCTTSHHHHHHHHTTCCHHHHHHHHH-HHSCCCC
T ss_pred hhhhHHHHHHHcCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHH-HHhcCCC
Confidence 45666789999999999999999999999999999999999999999999999999999999999999999 8876553
No 160
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.18 E-value=4.7e-10 Score=125.83 Aligned_cols=217 Identities=15% Similarity=0.113 Sum_probs=135.2
Q ss_pred CCCccCChHHHHHHHHHh-c----c--CCCCCcEE--ECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccc
Q 003094 196 LDPVVGRQPQIERVVQIL-G----R--RTKNNPCL--IGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVA 266 (848)
Q Consensus 196 ld~iiG~~~~~~~l~~~l-~----~--~~~~~iLL--~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~ 266 (848)
.+.++|+++++++|...+ . . ..+.+++| +||||+|||++++.+++.+..... ..-.+..++++++.....
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 99 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAA-KEGLTVKQAYVNAFNAPN 99 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHH-HTTCCEEEEEEEGGGCCS
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHh-ccCCceeEEEEECCCCCC
Confidence 367999999999998887 3 2 34567888 999999999999999998753100 000135677787643211
Q ss_pred c------------c--cccc-hHHHHHHHHHHHHH-hCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhc-----C--
Q 003094 267 G------------T--KYRG-EFEERLKKLMEEIK-QSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLA-----R-- 323 (848)
Q Consensus 267 ~------------~--~~~g-~~~~~l~~l~~~~~-~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~-----~-- 323 (848)
. . ...+ .....+..+...+. ...+.+|+|||+|.+..... ...+....|...+. .
T Consensus 100 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~--~~~~~l~~l~~~~~~~~~~~~~ 177 (412)
T 1w5s_A 100 LYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPR--IAAEDLYTLLRVHEEIPSRDGV 177 (412)
T ss_dssp HHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTT--SCHHHHHHHHTHHHHSCCTTSC
T ss_pred HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccC--cchHHHHHHHHHHHhcccCCCC
Confidence 0 0 0001 11122223333332 35588999999999964211 11233333333332 3
Q ss_pred CceEEEEeeChHHHHhhhhcC---hhhhcccC-CCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhccc
Q 003094 324 GELQCIGATTLDEYRKHIEKD---PALERRFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYI 399 (848)
Q Consensus 324 ~~v~vI~atn~~~~~~~~~~d---~al~~Rf~-~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~ 399 (848)
..+.+|++++..+.... ++ +.+.++|. .+.+++++.++..+++...+... .....++++.+..++..+....
T Consensus 178 ~~v~lI~~~~~~~~~~~--l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~ 253 (412)
T 1w5s_A 178 NRIGFLLVASDVRALSY--MREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELG--LRDTVWEPRHLELISDVYGEDK 253 (412)
T ss_dssp CBEEEEEEEEETHHHHH--HHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHH--BCTTSCCHHHHHHHHHHHCGGG
T ss_pred ceEEEEEEeccccHHHH--HhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhc--CCCCCCChHHHHHHHHHHHHhc
Confidence 67888988876654322 34 66777775 59999999999999998766532 1223578888999988887433
Q ss_pred ccCCChhhHHHHHHHHhhHH
Q 003094 400 SDRFLPDKAIDLIDEAGSRV 419 (848)
Q Consensus 400 ~~~~~p~~a~~ll~~a~~~~ 419 (848)
+....|..+..++..+...+
T Consensus 254 ~~~G~p~~~~~l~~~a~~~a 273 (412)
T 1w5s_A 254 GGDGSARRAIVALKMACEMA 273 (412)
T ss_dssp TSCCCHHHHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHH
Confidence 11234777888887765443
No 161
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=99.17 E-value=5.2e-11 Score=113.28 Aligned_cols=73 Identities=58% Similarity=0.975 Sum_probs=69.2
Q ss_pred hhhHHhhHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHhhCCCchHHHHHHHcCCChHHHHHHHHHHhccccc
Q 003094 90 AMFERFTEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRTQVIRMVGESTE 162 (848)
Q Consensus 90 ~~~~~~t~~a~~~l~~A~~~A~~~~~~~i~~eHlLlall~~~~~~a~~iL~~~gv~~~~l~~~~~~~~~~~~~ 162 (848)
+||++||+++++++..|+++|+++||.+|+|||||+||++++++.+..+|+.+|+|++.++..+...+...+.
T Consensus 2 ~m~~~~t~~~~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~~~~~iL~~~gv~~~~l~~~l~~~l~~~~~ 74 (146)
T 3fh2_A 2 AMFERFTDRARRVIVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESMGISLDAVRQEVEEIIGQGSQ 74 (146)
T ss_dssp GGGGGBCHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCCSHHHHHHHHTTCCHHHHHHHHHHHHCCCSC
T ss_pred chhhhcCHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHhCCCChHHHHHHHcCCCHHHHHHHHHHHhccCCC
Confidence 5899999999999999999999999999999999999999999999999999999999999999998876544
No 162
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=99.13 E-value=6e-11 Score=113.18 Aligned_cols=74 Identities=22% Similarity=0.316 Sum_probs=67.8
Q ss_pred hhhHHhhHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHhhCCCchHHHHHHHcCCChHHHHHHHHHHhcccccc
Q 003094 90 AMFERFTEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRTQVIRMVGESTEA 163 (848)
Q Consensus 90 ~~~~~~t~~a~~~l~~A~~~A~~~~~~~i~~eHlLlall~~~~~~a~~iL~~~gv~~~~l~~~~~~~~~~~~~~ 163 (848)
||+++||+++++++..|+.+|+++||.+|+|||||+||++++++.+..+|+.+|+|++.++..++..+...|.+
T Consensus 1 M~~~~~t~~~~~~l~~A~~~A~~~~~~~i~~eHlLlaLl~~~~~~~~~iL~~~g~~~~~l~~~l~~~l~~~p~~ 74 (148)
T 1khy_A 1 MRLDRLTNKFQLALADAQSLALGHDNQFIEPLHLMSALLNQEGGSVSPLLTSAGINAGQLRTDINQALNRLPQV 74 (148)
T ss_dssp ---CCBCHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHTCTTCSHHHHHHHHTCCHHHHHHHHHHHHTTSCCC
T ss_pred CChhhhhHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHcCCCchHHHHHHHcCCCHHHHHHHHHHHHHhCCCC
Confidence 57889999999999999999999999999999999999999999999999999999999999999998876654
No 163
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=99.13 E-value=5.7e-11 Score=113.64 Aligned_cols=73 Identities=58% Similarity=0.922 Sum_probs=66.0
Q ss_pred hhhHHhhHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHhhCCCchHHHHHHHcCCChHHHHHHHHHHhccccc
Q 003094 90 AMFERFTEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRTQVIRMVGESTE 162 (848)
Q Consensus 90 ~~~~~~t~~a~~~l~~A~~~A~~~~~~~i~~eHlLlall~~~~~~a~~iL~~~gv~~~~l~~~~~~~~~~~~~ 162 (848)
||+++||+++++++..|+++|+++||.+|+|||||+||++++++.+..+|+.+|+|++.++..++..++..+.
T Consensus 1 M~~~~~t~~~~~al~~A~~~A~~~~h~~i~~eHlLlaLl~~~~~~~~~iL~~~g~~~~~l~~~l~~~l~~~~~ 73 (150)
T 2y1q_A 1 MMFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEVESLIGRAQE 73 (150)
T ss_dssp ---CCBCHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHCSSHHHHHHHHTTCCHHHHHHHHHHHHCCC--
T ss_pred CcchhhCHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCCCHHHHHHHHcCCCHHHHHHHHHHHhccCCc
Confidence 5789999999999999999999999999999999999999999999999999999999999999999877654
No 164
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.09 E-value=1.7e-11 Score=143.29 Aligned_cols=157 Identities=13% Similarity=0.136 Sum_probs=94.3
Q ss_pred CCccCChHHHHHHHHHhccCCC-----------CCcEEECCCCCcHHHHHHHHHHHhhCCCCCCC--CCCceEEEEeCCc
Q 003094 197 DPVVGRQPQIERVVQILGRRTK-----------NNPCLIGEPGVGKTAIAEGLAQRIASGDVPDT--IEGKKVITLDMGL 263 (848)
Q Consensus 197 d~iiG~~~~~~~l~~~l~~~~~-----------~~iLL~GppGtGKT~la~~la~~l~~~~~~~~--l~~~~v~~~~~~~ 263 (848)
..++|++..++.+...+..... .|+||+||||||||++|+++++.+........ .....+.......
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~~ 374 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVRE 374 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSSG
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeeec
Confidence 4589999988887665554421 28999999999999999999987743211100 0000011100000
Q ss_pred ccccccccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCC---------------ceEE
Q 003094 264 LVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARG---------------ELQC 328 (848)
Q Consensus 264 l~~~~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~---------------~v~v 328 (848)
.. .|....... .+. ...++||||||+|.+. .+.++.|...|+.+ .+.+
T Consensus 375 ~~-----~g~~~~~~G-~l~---~A~~gil~IDEid~l~--------~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~v 437 (595)
T 3f9v_A 375 KG-----TGEYYLEAG-ALV---LADGGIAVIDEIDKMR--------DEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAV 437 (595)
T ss_dssp GG-----TSSCSEEEC-HHH---HHSSSEECCTTTTCCC--------SHHHHHHHHHHHSSSEEEESSSSEEEECCCCEE
T ss_pred cc-----cccccccCC-eeE---ecCCCcEEeehhhhCC--------HhHhhhhHHHHhCCEEEEecCCcEEEecCceEE
Confidence 00 010000000 111 1235699999999984 33677787777643 3569
Q ss_pred EEeeChHHHHhhh----------hcChhhhcccC--CCcCCCCCHHHHHHHHHHHHH
Q 003094 329 IGATTLDEYRKHI----------EKDPALERRFQ--PVKVPEPSVDETIQILKGLRE 373 (848)
Q Consensus 329 I~atn~~~~~~~~----------~~d~al~~Rf~--~i~~~~p~~~e~~~Il~~~~~ 373 (848)
|+|||+.. ..+ .+++++++||+ .+..+.|+.+ ...|.+.+..
T Consensus 438 IaatNp~~--G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e-~~~i~~~il~ 491 (595)
T 3f9v_A 438 IAAGNPKF--GRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQ-DRELANYILD 491 (595)
T ss_dssp EEEECCTT--CCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHH-HHHHHHHHHT
T ss_pred EEEcCCcC--CccCcccCchhccCCCHHHHhhCeEEEEeCCCCCHH-HHHHHHHHHH
Confidence 99999873 112 68999999996 3455666666 6666665554
No 165
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.04 E-value=1.7e-10 Score=131.16 Aligned_cols=101 Identities=26% Similarity=0.314 Sum_probs=76.9
Q ss_pred HhhccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchh
Q 003094 528 TLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVS 607 (848)
Q Consensus 528 ~l~~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~ 607 (848)
..++.++||+++++.+...+.....+.. |..++||+||||||||++|+++|+.+ +...+|+.++++++...
T Consensus 34 ~~~~~iiG~~~~~~~l~~~~~~~~~~~~----~~~~iLl~GppGtGKT~la~ala~~l-~~~~~~~~~~~~~~~~~---- 104 (456)
T 2c9o_A 34 QAASGLVGQENAREACGVIVELIKSKKM----AGRAVLLAGPPGTGKTALALAIAQEL-GSKVPFCPMVGSEVYST---- 104 (456)
T ss_dssp SEETTEESCHHHHHHHHHHHHHHHTTCC----TTCEEEEECCTTSSHHHHHHHHHHHH-CTTSCEEEEEGGGGCCS----
T ss_pred hchhhccCHHHHHHHHHHHHHHHHhCCC----CCCeEEEECCCcCCHHHHHHHHHHHh-CCCceEEEEeHHHHHHH----
Confidence 3568899999999999888877765533 33469999999999999999999998 33489999998887432
Q ss_pred cccCCCCCCcccccccchhHHHHc------CCCeEEEEcCCCcCCh
Q 003094 608 KLIGSPPGYVGYTEGGQLTEAVRR------RPYTVVLFDEIEKAHP 647 (848)
Q Consensus 608 ~l~g~~~g~~g~~~~~~l~~~~~~------~~~~Vl~lDEid~l~~ 647 (848)
|+|..+. +...++. ..++||||||+|.+.+
T Consensus 105 --------~~~~~~~--~~~~f~~a~~~~~~~~~il~iDEid~l~~ 140 (456)
T 2c9o_A 105 --------EIKKTEV--LMENFRRAIGLRIKETKEVYEGEVTELTP 140 (456)
T ss_dssp --------SSCHHHH--HHHHHHHTEEEEEEEEEEEEEEEEEEEEE
T ss_pred --------hhhhhHH--HHHHHHHHHhhhhcCCcEEEEechhhccc
Confidence 5554432 4444443 3579999999998854
No 166
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=99.03 E-value=2.3e-10 Score=108.63 Aligned_cols=72 Identities=50% Similarity=0.804 Sum_probs=67.6
Q ss_pred hhHHhhHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHhhCCCchHHHHHHHcCCChHHHHHHHHHHhccccc
Q 003094 91 MFERFTEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRTQVIRMVGESTE 162 (848)
Q Consensus 91 ~~~~~t~~a~~~l~~A~~~A~~~~~~~i~~eHlLlall~~~~~~a~~iL~~~gv~~~~l~~~~~~~~~~~~~ 162 (848)
+|++||+++++++..|+++|+++||.+|+|||||+||++++++.+..+|+.+|+|++.++..++..+...+.
T Consensus 4 ~~~~~T~~a~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~~~~~iL~~~gvd~~~l~~~l~~~l~~~~~ 75 (145)
T 3fes_A 4 NFNRFTQRAKKAIDLAFESAKSLGHNIVGSEHILLGLLREEEGIAAKVLSKVGFTEAYLEGKIVDMEGKGEE 75 (145)
T ss_dssp CCCCBCHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHCSSHHHHHHHHHTCCHHHHHHHHHHHHCCCSC
T ss_pred cccccCHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCCChHHHHHHHcCCCHHHHHHHHHHHHhcCCC
Confidence 467899999999999999999999999999999999999999999999999999999999999998876543
No 167
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=98.99 E-value=9.8e-11 Score=130.35 Aligned_cols=122 Identities=26% Similarity=0.466 Sum_probs=71.6
Q ss_pred HHHHHHhhccccChHHHHHHHHHHHHHHH--ccCCC---CCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecc
Q 003094 523 LKMEETLHKRVIGQDEAVKAISRAIRRAR--VGLKN---PNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDM 597 (848)
Q Consensus 523 ~~l~~~l~~~vigq~~~~~~l~~~~~~~~--~~~~~---~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~ 597 (848)
.++.+.+.+.|+||+++++.|..++...+ ..+.. ...+..++||+||||||||++|+++|+.+ +.+|+.+++
T Consensus 7 ~~i~~~Ld~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l---~~~~~~v~~ 83 (444)
T 1g41_A 7 REIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA---NAPFIKVEA 83 (444)
T ss_dssp HHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHT---TCCEEEEEG
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHc---CCCceeecc
Confidence 34667888999999999999988885532 11111 11234569999999999999999999998 789999998
Q ss_pred cccccccchhcccCCCCCCcccccccchhHHHHcCCCeEEEEcCCCcCC--------hHHHHHHHhhhcC
Q 003094 598 SEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAH--------PDVFNMMLQILED 659 (848)
Q Consensus 598 ~~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~--------~~~~~~Ll~~le~ 659 (848)
+.+.+ .+|+|.+....+......+ ..++++||++... ..+++.|+..|+.
T Consensus 84 ~~~~~-----------~g~vG~d~e~~lr~lf~~a-~~~~~~De~d~~~~~~~~~~e~rvl~~LL~~~dg 141 (444)
T 1g41_A 84 TKFTE-----------VGYVGKEVDSIIRDLTDSA-MKLVRQQEIAKNRARAEDVAEERILDALLPPAKN 141 (444)
T ss_dssp GGGC---------------CCCCTHHHHHHHHHHH-HHHHHHHHHHSCC---------------------
T ss_pred hhhcc-----------cceeeccHHHHHHHHHHHH-HhcchhhhhhhhhccchhhHHHHHHHHHHHHhhc
Confidence 87643 2467754333222222211 1234578877653 3477777777764
No 168
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.99 E-value=7.2e-09 Score=113.18 Aligned_cols=183 Identities=17% Similarity=0.170 Sum_probs=117.2
Q ss_pred CCccCChHHHHHHHHHhccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCccc------c----
Q 003094 197 DPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLV------A---- 266 (848)
Q Consensus 197 d~iiG~~~~~~~l~~~l~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~------~---- 266 (848)
+.++||++++++|.+.+... ..++|+||+|+|||++++.+++.. + ++++++.... .
T Consensus 12 ~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~----------~--~~~~~~~~~~~~~~~~~~~~~ 77 (350)
T 2qen_A 12 EDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER----------P--GILIDCRELYAERGHITREEL 77 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS----------S--EEEEEHHHHHHTTTCBCHHHH
T ss_pred HhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc----------C--cEEEEeecccccccCCCHHHH
Confidence 56899999999999988753 688999999999999999999875 2 5566653221 0
Q ss_pred -------------------------cccc---cchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCCchHHHHHHHh
Q 003094 267 -------------------------GTKY---RGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILK 318 (848)
Q Consensus 267 -------------------------~~~~---~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~ 318 (848)
+... .......+..+...+...++.+|+|||+|.+.... .....+....|.
T Consensus 78 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~-~~~~~~~~~~L~ 156 (350)
T 2qen_A 78 IKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYG-SRGGKELLALFA 156 (350)
T ss_dssp HHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBT-TTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccC-ccchhhHHHHHH
Confidence 0000 01122222222222222248999999999986411 011234566666
Q ss_pred hhhcC-CceEEEEeeChHHH-Hhh---hhcChhhhcccC-CCcCCCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHH
Q 003094 319 PSLAR-GELQCIGATTLDEY-RKH---IEKDPALERRFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAA 392 (848)
Q Consensus 319 ~~l~~-~~v~vI~atn~~~~-~~~---~~~d~al~~Rf~-~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~ 392 (848)
...+. ..+.+|.+++.... ... ......+..|+. .+.+++++.++..+++..... ..+..++++.+..+.
T Consensus 157 ~~~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~----~~~~~~~~~~~~~i~ 232 (350)
T 2qen_A 157 YAYDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFR----EVNLDVPENEIEEAV 232 (350)
T ss_dssp HHHHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHH----TTTCCCCHHHHHHHH
T ss_pred HHHHhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHH
Confidence 65543 46778887766542 211 122334554554 899999999999998876544 234567888888888
Q ss_pred hhhhcc
Q 003094 393 QLSYQY 398 (848)
Q Consensus 393 ~~s~~~ 398 (848)
..+.|+
T Consensus 233 ~~tgG~ 238 (350)
T 2qen_A 233 ELLDGI 238 (350)
T ss_dssp HHHTTC
T ss_pred HHhCCC
Confidence 888775
No 169
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.92 E-value=4.4e-09 Score=117.87 Aligned_cols=219 Identities=16% Similarity=0.125 Sum_probs=129.2
Q ss_pred hccccChHHHHHHHHHHH-HHHHccCCCCCCCceEEEe--ecCCcchHHHHHHHHHHHhcC------CCCceEEeccccc
Q 003094 530 HKRVIGQDEAVKAISRAI-RRARVGLKNPNRPIASFIF--SGPTGVGKSELAKALAAYYFG------SEEAMIRLDMSEF 600 (848)
Q Consensus 530 ~~~vigq~~~~~~l~~~~-~~~~~~~~~~~~p~~~lLl--~Gp~GtGKT~lA~~la~~l~~------~~~~~i~i~~~~~ 600 (848)
...++|.+..++.+...+ .....+. .....++++ +||+|+|||++++.+++.+.. .+..++.++|...
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~---~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGA---GLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNA 97 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSS---CBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGC
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCC---CCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCC
Confidence 357899999999999888 6654331 012246888 999999999999999987632 1456778887543
Q ss_pred ccccc-hhc---ccCCCCCCcccccc---cchhHHHH-cCCCeEEEEcCCCcCC------hHHHHHHHhhhcCcEEEcCC
Q 003094 601 MERHT-VSK---LIGSPPGYVGYTEG---GQLTEAVR-RRPYTVVLFDEIEKAH------PDVFNMMLQILEDGRLTDSK 666 (848)
Q Consensus 601 ~~~~~-~~~---l~g~~~g~~g~~~~---~~l~~~~~-~~~~~Vl~lDEid~l~------~~~~~~Ll~~le~g~~~~~~ 666 (848)
..... ... -+|.+....+.... ..+...+. ...+.||||||++.+. .+.+..|++.+++... .
T Consensus 98 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~---~ 174 (412)
T 1w5s_A 98 PNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPS---R 174 (412)
T ss_dssp CSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCC---T
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhccc---C
Confidence 22111 111 12322111121111 12333333 2446799999999874 4777777777764210 0
Q ss_pred CceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHHhhcC---hhhhhccCeEEEcCCCCHH
Q 003094 667 GRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFR---PEFLNRLDEMIVFRQLTKL 743 (848)
Q Consensus 667 g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~ll~R~d~~i~f~~l~~~ 743 (848)
+ ...++.+|+++|... +...+. +.+.+++...+.|+||+.+
T Consensus 175 ~---~~~~v~lI~~~~~~~---------------------------------~~~~l~~~~~~~~~~~~~~i~l~~l~~~ 218 (412)
T 1w5s_A 175 D---GVNRIGFLLVASDVR---------------------------------ALSYMREKIPQVESQIGFKLHLPAYKSR 218 (412)
T ss_dssp T---SCCBEEEEEEEEETH---------------------------------HHHHHHHHCHHHHTTCSEEEECCCCCHH
T ss_pred C---CCceEEEEEEecccc---------------------------------HHHHHhhhcchhhhhcCCeeeeCCCCHH
Confidence 0 013567888875211 011122 5566666556999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCeEeecHHHHHHHHHccCCCC---CCchHHHHHHHH
Q 003094 744 EVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPS---YGARPLRRAIMR 797 (848)
Q Consensus 744 el~~I~~~~l~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~---~g~r~L~~~i~~ 797 (848)
++.+++...+... +....+++++++.+...+.... ++.|.+...+..
T Consensus 219 e~~~ll~~~~~~~-------~~~~~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~ 268 (412)
T 1w5s_A 219 ELYTILEQRAELG-------LRDTVWEPRHLELISDVYGEDKGGDGSARRAIVALKM 268 (412)
T ss_dssp HHHHHHHHHHHHH-------BCTTSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-------CCCCCCChHHHHHHHHHHHHhccCCCcHHHHHHHHHH
Confidence 9999997766432 1112378888888888533111 344555544443
No 170
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.89 E-value=1.7e-09 Score=137.13 Aligned_cols=85 Identities=15% Similarity=0.188 Sum_probs=53.4
Q ss_pred EEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhcccCCC-CCCccc----ccc--cchhHHHHcCCCe
Q 003094 563 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSP-PGYVGY----TEG--GQLTEAVRRRPYT 635 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~-~g~~g~----~~~--~~l~~~~~~~~~~ 635 (848)
.+|++||||||||++|++++......+.+.+.++..+..+... ..-+|-. ..+++. .+. ..++..+++..++
T Consensus 1084 ~~l~~G~~g~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~-~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~ 1162 (1706)
T 3cmw_A 1084 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY-ARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVD 1162 (1706)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHH-HHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCS
T ss_pred EEEEEcCCCCChHHHHHHHHHHhhhcCCceeEEEcccchHHHH-HHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCe
Confidence 4899999999999999999876644466666666654332111 1112211 113333 111 3455566788899
Q ss_pred EEEEcCCCcCChH
Q 003094 636 VVLFDEIEKAHPD 648 (848)
Q Consensus 636 Vl~lDEid~l~~~ 648 (848)
++|+||++.+.|.
T Consensus 1163 ~i~~d~~~al~~~ 1175 (1706)
T 3cmw_A 1163 VIVVDSVAALTPK 1175 (1706)
T ss_dssp EEEESCGGGCCCH
T ss_pred EEEeCchHhcCcc
Confidence 9999999866543
No 171
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.85 E-value=5.2e-08 Score=107.22 Aligned_cols=177 Identities=20% Similarity=0.287 Sum_probs=112.6
Q ss_pred CCccCChHHHHHHHHHhcc--CCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccccc------
Q 003094 197 DPVVGRQPQIERVVQILGR--RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGT------ 268 (848)
Q Consensus 197 d~iiG~~~~~~~l~~~l~~--~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~------ 268 (848)
..++|....+.++...+.. ....+++++|++||||+++|+.+....... ..++.++|+.+....
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~~s~r~--------~~fv~vnc~~~~~~~~~~~lf 200 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRYSGRK--------GAFVDLNCASIPQELAESELF 200 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHHHHCCC--------SCEEEEESSSSCTTTHHHHHH
T ss_pred ccccccchHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHHhcccc--------CCcEEEEcccCChHHHHHHhc
Confidence 3578888777766655432 456779999999999999999998876431 238999998764210
Q ss_pred -----cccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCC-------------ceEEEE
Q 003094 269 -----KYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARG-------------ELQCIG 330 (848)
Q Consensus 269 -----~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~-------------~v~vI~ 330 (848)
.+.|....+ ...++ ...+.+|||||++.|. .+.+..|.++++.+ .+.+|+
T Consensus 201 g~~~g~~tga~~~~-~g~~~---~a~~gtlfldei~~l~--------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~ 268 (368)
T 3dzd_A 201 GHEKGAFTGALTRK-KGKLE---LADQGTLFLDEVGELD--------QRVQAKLLRVLETGSFTRLGGNQKIEVDIRVIS 268 (368)
T ss_dssp EECSCSSSSCCCCE-ECHHH---HTTTSEEEEETGGGSC--------HHHHHHHHHHHHHSEECCBTCCCBEECCCEEEE
T ss_pred CccccccCCccccc-CChHh---hcCCCeEEecChhhCC--------HHHHHHHHHHHHhCCcccCCCCcceeeeeEEEE
Confidence 011100000 01122 2345599999999994 45888888888743 367999
Q ss_pred eeChHHHH--hhhhcChhhhcccCC--CcCCCCCH--HHHHHHHHHHHHHHhhhhc---CCCChHHHHHHHh
Q 003094 331 ATTLDEYR--KHIEKDPALERRFQP--VKVPEPSV--DETIQILKGLRERYEIHHK---LRYTDEALVSAAQ 393 (848)
Q Consensus 331 atn~~~~~--~~~~~d~al~~Rf~~--i~~~~p~~--~e~~~Il~~~~~~~~~~~~---~~~s~~~l~~l~~ 393 (848)
+||..... ..-...+.|..|+.. |.+|+... ++...++..++.++....+ ..++++++..+..
T Consensus 269 at~~~l~~~v~~g~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~ 340 (368)
T 3dzd_A 269 ATNKNLEEEIKKGNFREDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMK 340 (368)
T ss_dssp EESSCHHHHHHTTSSCHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHT
T ss_pred ecCCCHHHHHHcCCccHHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHh
Confidence 99865432 111235677888875 45665544 5666666666666543332 3578887777665
No 172
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.83 E-value=6.4e-08 Score=105.85 Aligned_cols=179 Identities=17% Similarity=0.177 Sum_probs=110.4
Q ss_pred CCCccCChHHHHHHHHHhccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCccc-----ccccc
Q 003094 196 LDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLV-----AGTKY 270 (848)
Q Consensus 196 ld~iiG~~~~~~~l~~~l~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~-----~~~~~ 270 (848)
.+.++|+++++++|.+ +.. +.++|+||+|+|||++++.+++.+. ..++++++.... .....
T Consensus 12 ~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~ 77 (357)
T 2fna_A 12 RKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELN----------LPYIYLDLRKFEERNYISYKDF 77 (357)
T ss_dssp GGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHT----------CCEEEEEGGGGTTCSCCCHHHH
T ss_pred HHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcC----------CCEEEEEchhhccccCCCHHHH
Confidence 3568999999999999 775 5889999999999999999999873 235667765320 00000
Q ss_pred cch---------------------------------------HHHHHHHHHHHHHhC--CCeEEEEcccchhhhCCCCCc
Q 003094 271 RGE---------------------------------------FEERLKKLMEEIKQS--DEIILFIDEVHTLIGAGAAEG 309 (848)
Q Consensus 271 ~g~---------------------------------------~~~~l~~l~~~~~~~--~~~IL~IDEid~l~~~~~~~~ 309 (848)
... ....+..+++.+... ++.+|+|||+|++....
T Consensus 78 ~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~---- 153 (357)
T 2fna_A 78 LLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLR---- 153 (357)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCT----
T ss_pred HHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccC----
Confidence 000 001233444444432 48999999999986421
Q ss_pred hHHHHHHHhhhhcC-CceEEEEeeChHHH-Hhh---hhcChhhhccc-CCCcCCCCCHHHHHHHHHHHHHHHhhhhcCCC
Q 003094 310 AIDAANILKPSLAR-GELQCIGATTLDEY-RKH---IEKDPALERRF-QPVKVPEPSVDETIQILKGLRERYEIHHKLRY 383 (848)
Q Consensus 310 ~~~~~~~L~~~l~~-~~v~vI~atn~~~~-~~~---~~~d~al~~Rf-~~i~~~~p~~~e~~~Il~~~~~~~~~~~~~~~ 383 (848)
..+....|..+.+. .++.+|.+++.... ... ......+..|+ ..+.+++++.++..+++...... .+...
T Consensus 154 ~~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~----~~~~~ 229 (357)
T 2fna_A 154 GVNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQE----ADIDF 229 (357)
T ss_dssp TCCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHH----HTCCC
T ss_pred chhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHH----cCCCC
Confidence 11233444444432 46778888776542 111 12233455565 47899999999999998876542 23333
Q ss_pred ChHHHHHHHhhhhcc
Q 003094 384 TDEALVSAAQLSYQY 398 (848)
Q Consensus 384 s~~~l~~l~~~s~~~ 398 (848)
++. ..+...+.|+
T Consensus 230 ~~~--~~i~~~t~G~ 242 (357)
T 2fna_A 230 KDY--EVVYEKIGGI 242 (357)
T ss_dssp CCH--HHHHHHHCSC
T ss_pred CcH--HHHHHHhCCC
Confidence 332 5666666664
No 173
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.82 E-value=8.7e-08 Score=106.26 Aligned_cols=179 Identities=17% Similarity=0.271 Sum_probs=111.5
Q ss_pred CCCccCChHHHHHHHHHhcc--CCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCccccc------
Q 003094 196 LDPVVGRQPQIERVVQILGR--RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAG------ 267 (848)
Q Consensus 196 ld~iiG~~~~~~~l~~~l~~--~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~------ 267 (848)
++.++|....++++.+.+.. ....+++|+|++|||||++|+.+...... .+.+++.+||+.+...
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r-------~~~~fv~v~~~~~~~~~~~~el 208 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDR-------SKEPFVALNVASIPRDIFEAEL 208 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHSTT-------TTSCEEEEETTTSCHHHHHHHH
T ss_pred chhhhhccHHhhHHHHHHHHhcCCCCCeEEecCCCcCHHHHHHHHHHhcCC-------CCCCeEEEecCCCCHHHHHHHh
Confidence 45688888888877665543 45677899999999999999999887543 2467999999875421
Q ss_pred -----ccccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCC-------------ceEEE
Q 003094 268 -----TKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARG-------------ELQCI 329 (848)
Q Consensus 268 -----~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~-------------~v~vI 329 (848)
+.+.|.... -..++. ...+++|||||++.+. .+.+..|.++++.+ .+.+|
T Consensus 209 fg~~~g~~tga~~~-~~g~~~---~a~~gtlfldei~~l~--------~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii 276 (387)
T 1ny5_A 209 FGYEKGAFTGAVSS-KEGFFE---LADGGTLFLDEIGELS--------LEAQAKLLRVIESGKFYRLGGRKEIEVNVRIL 276 (387)
T ss_dssp HCBCTTSSTTCCSC-BCCHHH---HTTTSEEEEESGGGCC--------HHHHHHHHHHHHHSEECCBTCCSBEECCCEEE
T ss_pred cCCCCCCCCCcccc-cCCcee---eCCCcEEEEcChhhCC--------HHHHHHHHHHHhcCcEEeCCCCceeeccEEEE
Confidence 011111000 001222 2345699999999994 45788888877642 46799
Q ss_pred EeeChHHHH--hhhhcChhhhcccCCCcCCCCCH----HHHHHHHHHHHHHHhhhhc---CCCChHHHHHHHh
Q 003094 330 GATTLDEYR--KHIEKDPALERRFQPVKVPEPSV----DETIQILKGLRERYEIHHK---LRYTDEALVSAAQ 393 (848)
Q Consensus 330 ~atn~~~~~--~~~~~d~al~~Rf~~i~~~~p~~----~e~~~Il~~~~~~~~~~~~---~~~s~~~l~~l~~ 393 (848)
++||..-.. ..-...+.|..|+..+.+..|+. ++...++..++.++....+ ..++++++..+..
T Consensus 277 ~at~~~l~~~~~~g~fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~ 349 (387)
T 1ny5_A 277 AATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLS 349 (387)
T ss_dssp EEESSCHHHHHHTTSSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHH
T ss_pred EeCCCCHHHHHHcCCccHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHh
Confidence 999874321 11234567777887655555554 4445555555555433222 2356666666554
No 174
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.79 E-value=1.5e-08 Score=111.80 Aligned_cols=142 Identities=18% Similarity=0.143 Sum_probs=85.2
Q ss_pred CCccCChHHHHHHHHHhccCC-----CCCcEEECCCCCcHHHHHHHH-HHHhhCCCCCCCCCCceEEEEeCCc----ccc
Q 003094 197 DPVVGRQPQIERVVQILGRRT-----KNNPCLIGEPGVGKTAIAEGL-AQRIASGDVPDTIEGKKVITLDMGL----LVA 266 (848)
Q Consensus 197 d~iiG~~~~~~~l~~~l~~~~-----~~~iLL~GppGtGKT~la~~l-a~~l~~~~~~~~l~~~~v~~~~~~~----l~~ 266 (848)
.+++|++..++.|.-.+.... ..|+||.|+||| ||++++.+ ++.+. ..++...... +..
T Consensus 213 apI~G~e~vK~aLll~L~GG~~k~rgdihVLL~G~PGt-KS~Lar~i~~~i~p----------R~~ft~g~~ss~~gLt~ 281 (506)
T 3f8t_A 213 APLPGAEEVGKMLALQLFSCVGKNSERLHVLLAGYPVV-CSEILHHVLDHLAP----------RGVYVDLRRTELTDLTA 281 (506)
T ss_dssp CCSTTCHHHHHHHHHHHTTCCSSGGGCCCEEEESCHHH-HHHHHHHHHHHTCS----------SEEEEEGGGCCHHHHSE
T ss_pred cccCCCHHHHHHHHHHHcCCccccCCceeEEEECCCCh-HHHHHHHHHHHhCC----------CeEEecCCCCCccCceE
Confidence 349999998777766665432 238999999999 99999999 65442 1222211100 000
Q ss_pred cccccch--HHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCC-----------ceEEEEeeC
Q 003094 267 GTKYRGE--FEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARG-----------ELQCIGATT 333 (848)
Q Consensus 267 ~~~~~g~--~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~-----------~v~vI~atn 333 (848)
+ ..+. +.-.- ..+......+|||||++.+- ...+..|+..|+.+ .+.||+|+|
T Consensus 282 -s-~r~~tG~~~~~----G~l~LAdgGvl~lDEIn~~~--------~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~N 347 (506)
T 3f8t_A 282 -V-LKEDRGWALRA----GAAVLADGGILAVDHLEGAP--------EPHRWALMEAMDKGTVTVDGIALNARCAVLAAIN 347 (506)
T ss_dssp -E-EEESSSEEEEE----CHHHHTTTSEEEEECCTTCC--------HHHHHHHHHHHHHSEEEETTEEEECCCEEEEEEC
T ss_pred -E-EEcCCCcccCC----CeeEEcCCCeeehHhhhhCC--------HHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeC
Confidence 0 0000 00000 11122345699999999984 44788888888744 478999999
Q ss_pred hHHHH------hhhhcChhhhcccC--CCcCCCCCHHH
Q 003094 334 LDEYR------KHIEKDPALERRFQ--PVKVPEPSVDE 363 (848)
Q Consensus 334 ~~~~~------~~~~~d~al~~Rf~--~i~~~~p~~~e 363 (848)
+.+.. ..+.+++++++||+ .+.++.|+.++
T Consensus 348 P~~~yd~~~s~~~~~Lp~alLDRFDLi~i~~d~pd~e~ 385 (506)
T 3f8t_A 348 PGEQWPSDPPIARIDLDQDFLSHFDLIAFLGVDPRPGE 385 (506)
T ss_dssp CCC--CCSCGGGGCCSCHHHHTTCSEEEETTC------
T ss_pred cccccCCCCCccccCCChHHhhheeeEEEecCCCChhH
Confidence 87511 12478999999997 45667776654
No 175
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.70 E-value=1.8e-07 Score=102.09 Aligned_cols=165 Identities=13% Similarity=0.088 Sum_probs=110.1
Q ss_pred eEEEeecCCcchHHHHHHHHHHHhcCCC-CceEEecccccccccchhcccCCCCCCcccccccchhHHHH----cCCCeE
Q 003094 562 ASFIFSGPTGVGKSELAKALAAYYFGSE-EAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVR----RRPYTV 636 (848)
Q Consensus 562 ~~lLl~Gp~GtGKT~lA~~la~~l~~~~-~~~i~i~~~~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~----~~~~~V 636 (848)
+.+||+||+|+||++.++.+++.+.+.+ .++..+... +..+.+.+.+.+. -+++.|
T Consensus 19 ~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-------------------~~~~~~~l~~~~~~~plf~~~kv 79 (343)
T 1jr3_D 19 AAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSID-------------------PNTDWNAIFSLCQAMSLFASRQT 79 (343)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECC-------------------TTCCHHHHHHHHHHHHHCCSCEE
T ss_pred cEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEec-------------------CCCCHHHHHHHhcCcCCccCCeE
Confidence 3599999999999999999998874322 111111000 1111233433333 255789
Q ss_pred EEEcCCCc-CChHHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHH
Q 003094 637 VLFDEIEK-AHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLV 715 (848)
Q Consensus 637 l~lDEid~-l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~ 715 (848)
++|||++. ++.+.++.|++++++ +..+++||++++.....- .
T Consensus 80 vii~~~~~kl~~~~~~aLl~~le~-----------p~~~~~~il~~~~~~~~~-----------------~--------- 122 (343)
T 1jr3_D 80 LLLLLPENGPNAAINEQLLTLTGL-----------LHDDLLLIVRGNKLSKAQ-----------------E--------- 122 (343)
T ss_dssp EEEECCSSCCCTTHHHHHHHHHTT-----------CBTTEEEEEEESCCCTTT-----------------T---------
T ss_pred EEEECCCCCCChHHHHHHHHHHhc-----------CCCCeEEEEEcCCCChhh-----------------H---------
Confidence 99999999 999999999999997 235778887765211100 0
Q ss_pred HHHHHhhcChhhhhccCeEEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHH
Q 003094 716 TEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAI 795 (848)
Q Consensus 716 ~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I~~~~l~~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i 795 (848)
...+.+.+.+|+ .++.|.+++.+++...+...+.+ .| +.++++++++|++.. .++.|.+.+.+
T Consensus 123 ----~~k~~~~i~sr~-~~~~~~~l~~~~l~~~l~~~~~~-------~g--~~i~~~a~~~l~~~~---~gdl~~~~~el 185 (343)
T 1jr3_D 123 ----NAAWFTALANRS-VQVTCQTPEQAQLPRWVAARAKQ-------LN--LELDDAANQVLCYCY---EGNLLALAQAL 185 (343)
T ss_dssp ----TSHHHHHHTTTC-EEEEECCCCTTHHHHHHHHHHHH-------TT--CEECHHHHHHHHHSS---TTCHHHHHHHH
T ss_pred ----hhHHHHHHHhCc-eEEEeeCCCHHHHHHHHHHHHHH-------cC--CCCCHHHHHHHHHHh---chHHHHHHHHH
Confidence 012447788999 89999999999999888776654 23 568999999999842 13455555555
Q ss_pred HHHH
Q 003094 796 MRLL 799 (848)
Q Consensus 796 ~~~l 799 (848)
+++.
T Consensus 186 ekl~ 189 (343)
T 1jr3_D 186 ERLS 189 (343)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 176
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.67 E-value=1.8e-08 Score=101.07 Aligned_cols=104 Identities=17% Similarity=0.231 Sum_probs=64.0
Q ss_pred hhhhhhcCCCCCccCChH----HHHHHHHHhccC----CCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEE
Q 003094 187 LTKLAEEGKLDPVVGRQP----QIERVVQILGRR----TKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVIT 258 (848)
Q Consensus 187 l~~~~~~~~ld~iiG~~~----~~~~l~~~l~~~----~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~ 258 (848)
+...+++.+|+++++.+. .++.+...+... .+.+++|+||||||||++++++++.+... +.++++
T Consensus 15 ~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~-------~~~~~~ 87 (202)
T 2w58_A 15 MPREILRASLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKR-------NVSSLI 87 (202)
T ss_dssp SCGGGGCCCTTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTT-------TCCEEE
T ss_pred CCHHHHcCCHhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc-------CCeEEE
Confidence 344556678999988653 344445554433 22789999999999999999999988642 456777
Q ss_pred EeCCcccccccccchH-HHHHHHHHHHHHhCCCeEEEEcccchh
Q 003094 259 LDMGLLVAGTKYRGEF-EERLKKLMEEIKQSDEIILFIDEVHTL 301 (848)
Q Consensus 259 ~~~~~l~~~~~~~g~~-~~~l~~l~~~~~~~~~~IL~IDEid~l 301 (848)
+++..+..... ... ...+..+++.+... .+|||||++..
T Consensus 88 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~--~~lilDei~~~ 127 (202)
T 2w58_A 88 VYVPELFRELK--HSLQDQTMNEKLDYIKKV--PVLMLDDLGAE 127 (202)
T ss_dssp EEHHHHHHHHH--HC---CCCHHHHHHHHHS--SEEEEEEECCC
T ss_pred EEhHHHHHHHH--HHhccchHHHHHHHhcCC--CEEEEcCCCCC
Confidence 77654431100 000 00012233444433 39999999765
No 177
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.66 E-value=3.7e-08 Score=96.92 Aligned_cols=104 Identities=18% Similarity=0.200 Sum_probs=64.9
Q ss_pred eEEEeecCCcchHHHHHHHHHHHhc-CCCCceEEecccccccccchhcccCCCCCCcccccccchhHHHHcCCCeEEEEc
Q 003094 562 ASFIFSGPTGVGKSELAKALAAYYF-GSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFD 640 (848)
Q Consensus 562 ~~lLl~Gp~GtGKT~lA~~la~~l~-~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~Vl~lD 640 (848)
..++|+||+|||||+++++++..+. ..+..++.+++.++...... .+.. . ....+...+. ...+|+||
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~------~-~~~~~~~~~~--~~~llilD 107 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKH--LMDE------G-KDTKFLKTVL--NSPVLVLD 107 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHHH--HHHH------T-CCSHHHHHHH--TCSEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHH--HhcC------c-hHHHHHHHhc--CCCEEEEe
Confidence 3589999999999999999999874 33445555666555322110 0000 0 0112333333 34699999
Q ss_pred CCC--cCChHHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCch
Q 003094 641 EIE--KAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSS 686 (848)
Q Consensus 641 Eid--~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~ 686 (848)
|++ .+++..++.|.++++... ..+..+|+|||....
T Consensus 108 E~~~~~~~~~~~~~l~~ll~~~~----------~~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 108 DLGSERLSDWQRELISYIITYRY----------NNLKSTIITTNYSLQ 145 (180)
T ss_dssp TCSSSCCCHHHHHHHHHHHHHHH----------HTTCEEEEECCCCSC
T ss_pred CCCCCcCCHHHHHHHHHHHHHHH----------HcCCCEEEEcCCChh
Confidence 998 567777788888775421 023468889986553
No 178
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=98.64 E-value=2.8e-08 Score=93.93 Aligned_cols=67 Identities=24% Similarity=0.349 Sum_probs=61.7
Q ss_pred hhHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHhhCCCchHHHHHHHcCCChHHHHHHHHHHhccc-ccc
Q 003094 95 FTEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRTQVIRMVGES-TEA 163 (848)
Q Consensus 95 ~t~~a~~~l~~A~~~A~~~~~~~i~~eHlLlall~~~~~~a~~iL~~~gv~~~~l~~~~~~~~~~~-~~~ 163 (848)
||+++++++..|+++|+++||.+|++||||+||+.+++ +..+|+.+|+|++.++..++..+... |.+
T Consensus 2 ~t~~~~~~l~~A~~~A~~~~~~~i~~eHlLlaLl~~~~--~~~iL~~~g~~~~~l~~~l~~~l~~~~p~~ 69 (143)
T 1k6k_A 2 LNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPS--AREALEACSVDLVALRQELEAFIEQTTPVL 69 (143)
T ss_dssp BCHHHHHHHHHHHHHHHHHTBSEECHHHHHHHHTTCHH--HHHHHHHTTCCHHHHHHHHHHHHHHHSCBC
T ss_pred CCHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHcCch--HHHHHHHcCCCHHHHHHHHHHHHHhcCCCC
Confidence 79999999999999999999999999999999998874 88999999999999999999988765 543
No 179
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.59 E-value=3.8e-08 Score=126.26 Aligned_cols=84 Identities=15% Similarity=0.158 Sum_probs=51.6
Q ss_pred EEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhcccCCCC-------CCcccccccchhHHHHcCCCe
Q 003094 563 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPP-------GYVGYTEGGQLTEAVRRRPYT 635 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~-------g~~g~~~~~~l~~~~~~~~~~ 635 (848)
.++|+||||||||+||.+++......+.....+++......... .-+|.+. .+.+..-...+...++....+
T Consensus 1429 ~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a-~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr~~~~~ 1507 (2050)
T 3cmu_A 1429 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYA-RKLGVDIDNLLCSQPDTGEQALEICDALARSGAVD 1507 (2050)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHH-HHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTCCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHH-HHcCCCchhceeecCChHHHHHHHHHHHHhcCCCC
Confidence 58999999999999999998876555666666666544322221 1122110 011111112344456667889
Q ss_pred EEEEcCCCcCCh
Q 003094 636 VVLFDEIEKAHP 647 (848)
Q Consensus 636 Vl~lDEid~l~~ 647 (848)
+|||||++.+-|
T Consensus 1508 lVVIDsi~al~p 1519 (2050)
T 3cmu_A 1508 VIVVDSVAALTP 1519 (2050)
T ss_dssp EEEESCGGGCCC
T ss_pred EEEEcChhHhcc
Confidence 999999985543
No 180
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.57 E-value=4.1e-08 Score=98.50 Aligned_cols=104 Identities=20% Similarity=0.249 Sum_probs=63.1
Q ss_pred eEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhcccCCCCCCcccccccchhHHHHcCCCeEEEEcC
Q 003094 562 ASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDE 641 (848)
Q Consensus 562 ~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDE 641 (848)
.+++|+||||||||++|++++..+...+.+++.+++..+... +... + .......+.+.+... .+|||||
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~-----~~~~---~-~~~~~~~~~~~~~~~--~~lilDe 123 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRE-----LKHS---L-QDQTMNEKLDYIKKV--PVLMLDD 123 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHH-----HHHC-------CCCHHHHHHHHHS--SEEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHH-----HHHH---h-ccchHHHHHHHhcCC--CEEEEcC
Confidence 359999999999999999999998766778888888765432 1111 0 000112233444444 4999999
Q ss_pred CCcC--ChHHHHHHH-hhhcCcEEEcCCCceeecCCeEEEEecCCCch
Q 003094 642 IEKA--HPDVFNMML-QILEDGRLTDSKGRTVDFKNTLLIMTSNVGSS 686 (848)
Q Consensus 642 id~l--~~~~~~~Ll-~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~ 686 (848)
++.. ++..+..|+ .+++... ..+..+|+|||....
T Consensus 124 i~~~~~~~~~~~~ll~~~l~~~~----------~~~~~~i~tsn~~~~ 161 (202)
T 2w58_A 124 LGAEAMSSWVRDDVFGPILQYRM----------FENLPTFFTSNFDMQ 161 (202)
T ss_dssp ECCC---CCGGGTTHHHHHHHHH----------HTTCCEEEEESSCHH
T ss_pred CCCCcCCHHHHHHHHHHHHHHHH----------hCCCCEEEEcCCCHH
Confidence 9764 333344333 3443210 023468889986554
No 181
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.53 E-value=1.2e-07 Score=90.12 Aligned_cols=90 Identities=18% Similarity=0.206 Sum_probs=61.0
Q ss_pred eEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhcccCCCCCCcccccccchhHHHHcCCCeEEEEcC
Q 003094 562 ASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDE 641 (848)
Q Consensus 562 ~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDE 641 (848)
..++|+||+|+|||+++++++..+...+...+.++..++... .+ +. ...+|+|||
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~--------------------~~---~~--~~~lLilDE 91 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT--------------------DA---AF--EAEYLAVDQ 91 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC--------------------GG---GG--GCSEEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH--------------------HH---Hh--CCCEEEEeC
Confidence 358899999999999999999987544445666665544321 01 11 246999999
Q ss_pred CCcCChHHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCc
Q 003094 642 IEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGS 685 (848)
Q Consensus 642 id~l~~~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~ 685 (848)
++.+.+..++.|+++++.-. ....+++|+|||...
T Consensus 92 ~~~~~~~~~~~l~~li~~~~---------~~g~~~iiits~~~p 126 (149)
T 2kjq_A 92 VEKLGNEEQALLFSIFNRFR---------NSGKGFLLLGSEYTP 126 (149)
T ss_dssp TTCCCSHHHHHHHHHHHHHH---------HHTCCEEEEEESSCT
T ss_pred ccccChHHHHHHHHHHHHHH---------HcCCcEEEEECCCCH
Confidence 99998877888888876411 011234777887544
No 182
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.52 E-value=3.4e-08 Score=97.21 Aligned_cols=133 Identities=17% Similarity=0.186 Sum_probs=71.1
Q ss_pred hhhhcCCCCCccCCh----HHHHHHHHHhc---cCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeC
Q 003094 189 KLAEEGKLDPVVGRQ----PQIERVVQILG---RRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDM 261 (848)
Q Consensus 189 ~~~~~~~ld~iiG~~----~~~~~l~~~l~---~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~ 261 (848)
+++++.+|+++++.. ..++.+.+.+. .....+++|+||+|||||+++++++..+... .+..+++++.
T Consensus 2 ~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~------~g~~~~~~~~ 75 (180)
T 3ec2_A 2 KRYWNANLDTYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEK------KGIRGYFFDT 75 (180)
T ss_dssp CSCTTCCSSSCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHH------SCCCCCEEEH
T ss_pred chhhhCccccccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHH------cCCeEEEEEH
Confidence 356778899988743 34444444443 2446789999999999999999999988411 1334555554
Q ss_pred CcccccccccchHHH-HHHHHHHHHHhCCCeEEEEcccchhhhCCCCCch-HHHHHHHhhhhcCCceEEEEeeChH
Q 003094 262 GLLVAGTKYRGEFEE-RLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGA-IDAANILKPSLARGELQCIGATTLD 335 (848)
Q Consensus 262 ~~l~~~~~~~g~~~~-~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~~~-~~~~~~L~~~l~~~~v~vI~atn~~ 335 (848)
..+... ....... ....++..+. .+.+|+|||++... .+... ..+.+++....+. +..+|.+||..
T Consensus 76 ~~~~~~--~~~~~~~~~~~~~~~~~~--~~~llilDE~~~~~---~~~~~~~~l~~ll~~~~~~-~~~ii~tsn~~ 143 (180)
T 3ec2_A 76 KDLIFR--LKHLMDEGKDTKFLKTVL--NSPVLVLDDLGSER---LSDWQRELISYIITYRYNN-LKSTIITTNYS 143 (180)
T ss_dssp HHHHHH--HHHHHHHTCCSHHHHHHH--TCSEEEEETCSSSC---CCHHHHHHHHHHHHHHHHT-TCEEEEECCCC
T ss_pred HHHHHH--HHHHhcCchHHHHHHHhc--CCCEEEEeCCCCCc---CCHHHHHHHHHHHHHHHHc-CCCEEEEcCCC
Confidence 433210 0000000 0002222222 35599999998531 11111 1222333333333 35666677655
No 183
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.47 E-value=1.7e-07 Score=89.14 Aligned_cols=106 Identities=15% Similarity=0.141 Sum_probs=67.1
Q ss_pred CCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccccccccchHHHHHHHHHHHHHhCCCeEEEEc
Q 003094 217 TKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFID 296 (848)
Q Consensus 217 ~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~IL~ID 296 (848)
...+++|+||+|+|||+++++++..+.. .+.++++++...+... .+ ...+.+|+||
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~-------~g~~~~~~~~~~~~~~------------~~-----~~~~~lLilD 90 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE-------AGKNAAYIDAASMPLT------------DA-----AFEAEYLAVD 90 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT-------TTCCEEEEETTTSCCC------------GG-----GGGCSEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh-------cCCcEEEEcHHHhhHH------------HH-----HhCCCEEEEe
Confidence 5567889999999999999999998853 2556778887665421 00 1235599999
Q ss_pred ccchhhhCCCCCchHHHHHHHhhhhcCCceEEEEeeChHHHHhhhhcChhhhcccC
Q 003094 297 EVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATTLDEYRKHIEKDPALERRFQ 352 (848)
Q Consensus 297 Eid~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~atn~~~~~~~~~~d~al~~Rf~ 352 (848)
|++.+.+. ....+...+....+.+..++|.+++.... . +...+.+.+||.
T Consensus 91 E~~~~~~~----~~~~l~~li~~~~~~g~~~iiits~~~p~-~-l~~~~~L~SRl~ 140 (149)
T 2kjq_A 91 QVEKLGNE----EQALLFSIFNRFRNSGKGFLLLGSEYTPQ-Q-LVIREDLRTRMA 140 (149)
T ss_dssp STTCCCSH----HHHHHHHHHHHHHHHTCCEEEEEESSCTT-T-SSCCHHHHHHGG
T ss_pred CccccChH----HHHHHHHHHHHHHHcCCcEEEEECCCCHH-H-ccccHHHHHHHh
Confidence 99886322 12334455555555555434445553221 1 122289999985
No 184
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=98.47 E-value=2.7e-07 Score=87.37 Aligned_cols=65 Identities=55% Similarity=0.884 Sum_probs=61.1
Q ss_pred HhhHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHhhCCCchHHHHHHHcCCChHHHHHHHHHHhc
Q 003094 94 RFTEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRTQVIRMVG 158 (848)
Q Consensus 94 ~~t~~a~~~l~~A~~~A~~~~~~~i~~eHlLlall~~~~~~a~~iL~~~gv~~~~l~~~~~~~~~ 158 (848)
.||+.++++++.|..+|+++|+.+|++||||+||++++++.+..+|+.+|+|++.++..+...++
T Consensus 81 ~~s~~~~~vL~~A~~~a~~~~~~~i~~eHlLlall~~~~~~a~~iL~~~gv~~~~l~~~l~~~~g 145 (146)
T 3fh2_A 81 PFTPRAKKVLELSLREGLQMGHKYIGTEFLLLGLIREGEGVAAQVLVKLGADLPRVRQQVIQLLS 145 (146)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCSSHHHHHHHHHTCCHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHhCCCcHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 47999999999999999999999999999999999998899999999999999999999877653
No 185
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=98.44 E-value=1.8e-07 Score=88.42 Aligned_cols=63 Identities=32% Similarity=0.618 Sum_probs=59.5
Q ss_pred HhhHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHhhCCCchHHHHHHHcCCChHHHHHHHHHH
Q 003094 94 RFTEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRTQVIRM 156 (848)
Q Consensus 94 ~~t~~a~~~l~~A~~~A~~~~~~~i~~eHlLlall~~~~~~a~~iL~~~gv~~~~l~~~~~~~ 156 (848)
.||+.++++++.|..+|+++|+.+|++||||+||++++++.+..+|+.+|+|++.++..+...
T Consensus 81 ~~s~~~~~vl~~A~~~A~~~~~~~v~~eHlLlAll~~~~~~a~~iL~~~gv~~~~l~~~i~~~ 143 (145)
T 3fes_A 81 VLSPRSKQILELSGMFANKLKTNYIGTEHILLAIIQEGEGIANKILNYAGVNDRTLAQLTIDM 143 (145)
T ss_dssp EECHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhCCCcHHHHHHHHcCCCHHHHHHHHHHH
Confidence 479999999999999999999999999999999999998899999999999999999888654
No 186
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.42 E-value=7.7e-07 Score=91.94 Aligned_cols=133 Identities=18% Similarity=0.234 Sum_probs=77.6
Q ss_pred eEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhcccCCCCCCcccccccchhHHHHcCCC-eEEEEc
Q 003094 562 ASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPY-TVVLFD 640 (848)
Q Consensus 562 ~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~-~Vl~lD 640 (848)
.+++|+||||||||++|++||+.+. -...++.+. .+ . . +..... .+++.|
T Consensus 105 n~~~l~GppgtGKt~~a~ala~~~~----l~G~vn~~~---~~-----------f-------~----l~~~~~k~i~l~E 155 (267)
T 1u0j_A 105 NTIWLFGPATTGKTNIAEAIAHTVP----FYGCVNWTN---EN-----------F-------P----FNDCVDKMVIWWE 155 (267)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSS----CEEECCTTC---SS-----------C-------T----TGGGSSCSEEEEC
T ss_pred cEEEEECCCCCCHHHHHHHHHhhhc----ccceeeccc---cc-----------c-------c----cccccccEEEEec
Confidence 4699999999999999999998741 011111110 00 0 0 111122 245555
Q ss_pred CCCcCChHHHHHHHhhhcCcEEEcCC--CceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHH
Q 003094 641 EIEKAHPDVFNMMLQILEDGRLTDSK--GRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEE 718 (848)
Q Consensus 641 Eid~l~~~~~~~Ll~~le~g~~~~~~--g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 718 (848)
|.. +..+.++.+..+++.+.+.-.. .......++-+|+|||........+. .. .+
T Consensus 156 e~~-~~~d~~~~lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~~i~~~~~g~-~~--------s~------------- 212 (267)
T 1u0j_A 156 EGK-MTAKVVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGN-ST--------TF------------- 212 (267)
T ss_dssp SCC-EETTTHHHHHHHHTTCCEEC------CCEECCCCEEEEESSCTTCEEETT-EE--------EC-------------
T ss_pred ccc-chhHHHHHHHHHhCCCcEEEecCcCCcccccCCCEEEEecCCcccccccC-cc--------ch-------------
Confidence 554 5557777888888765544221 11234467789999996443211100 00 00
Q ss_pred HHhhcChhhhhccCeEEEcC--------CCCHHHHHHHHH
Q 003094 719 LKQYFRPEFLNRLDEMIVFR--------QLTKLEVKEIAD 750 (848)
Q Consensus 719 l~~~~~~~ll~R~d~~i~f~--------~l~~~el~~I~~ 750 (848)
...+.|.+|+ .++.|. +++.++....+.
T Consensus 213 ---~~~~~L~sR~-~~f~F~~~~p~~~~~lt~~~~~~f~~ 248 (267)
T 1u0j_A 213 ---EHQQPLQDRM-FKFELTRRLDHDFGKVTKQEVKDFFR 248 (267)
T ss_dssp ---TTHHHHHTTE-EEEECCSCCCTTSCCCCHHHHHHHHH
T ss_pred ---hhhHHHhhhE-EEEECCCcCCcccCCCCHHHHHHHHH
Confidence 0125688999 889998 899999988886
No 187
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.41 E-value=9.8e-08 Score=102.38 Aligned_cols=104 Identities=14% Similarity=0.251 Sum_probs=61.0
Q ss_pred hhhhhcCCCCCccCCh----HHHHHHHHHhccC---CCCCcEEECCCCCcHHHHHHHHHHHhh-CCCCCCCCCCceEEEE
Q 003094 188 TKLAEEGKLDPVVGRQ----PQIERVVQILGRR---TKNNPCLIGEPGVGKTAIAEGLAQRIA-SGDVPDTIEGKKVITL 259 (848)
Q Consensus 188 ~~~~~~~~ld~iiG~~----~~~~~l~~~l~~~---~~~~iLL~GppGtGKT~la~~la~~l~-~~~~~~~l~~~~v~~~ 259 (848)
....++.+|+++++.. ..++.+.+++... ...+++|+||||||||+++.++++.+. .. +.+++++
T Consensus 115 ~~~~~~~tfd~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~-------g~~v~~~ 187 (308)
T 2qgz_A 115 PKSYRHIHLSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKK-------GVSTTLL 187 (308)
T ss_dssp CGGGGSCCGGGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHS-------CCCEEEE
T ss_pred CHHHHhCCHhhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhc-------CCcEEEE
Confidence 3334556888888644 2333444455432 257899999999999999999999886 42 4567777
Q ss_pred eCCcccccccccchHHHHHHHHHHHHHhCCCeEEEEcccchh
Q 003094 260 DMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTL 301 (848)
Q Consensus 260 ~~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l 301 (848)
++..+.......- ....+..+++.+.... +|||||++..
T Consensus 188 ~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~--lLiiDdig~~ 226 (308)
T 2qgz_A 188 HFPSFAIDVKNAI-SNGSVKEEIDAVKNVP--VLILDDIGAE 226 (308)
T ss_dssp EHHHHHHHHHCCC-C----CCTTHHHHTSS--EEEEETCCC-
T ss_pred EHHHHHHHHHHHh-ccchHHHHHHHhcCCC--EEEEcCCCCC
Confidence 7654332100000 0001122233333333 9999999765
No 188
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=98.35 E-value=8.2e-07 Score=84.45 Aligned_cols=65 Identities=58% Similarity=1.004 Sum_probs=60.4
Q ss_pred HhhHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHhhCCCchHHHHHHHcCCChHHHHHHHHHHhc
Q 003094 94 RFTEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRTQVIRMVG 158 (848)
Q Consensus 94 ~~t~~a~~~l~~A~~~A~~~~~~~i~~eHlLlall~~~~~~a~~iL~~~gv~~~~l~~~~~~~~~ 158 (848)
.||+.+++++..|..+|+.+|+.+|++||||+||++++++.+..+|+.+|++.+.++..+....+
T Consensus 79 ~~s~~~~~vL~~A~~~A~~~~~~~i~~ehlLlall~~~~~~a~~~L~~~gi~~~~l~~~i~~~~g 143 (150)
T 2y1q_A 79 HYTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLG 143 (150)
T ss_dssp EECHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCCSHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHhCCCcHHHHHHHHcCCCHHHHHHHHHHHHC
Confidence 47999999999999999999999999999999999998888889999999999999998877654
No 189
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.34 E-value=6.3e-07 Score=88.31 Aligned_cols=122 Identities=16% Similarity=0.213 Sum_probs=70.5
Q ss_pred HHHHHHHHHhccC-CCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccccccccchHHHHHHHHH
Q 003094 204 PQIERVVQILGRR-TKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEERLKKLM 282 (848)
Q Consensus 204 ~~~~~l~~~l~~~-~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~~~~g~~~~~l~~l~ 282 (848)
..+..+..++... .++++||+||||||||++|.++++.+.. .++.+.-+ .... .+
T Consensus 43 ~f~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~g----------~i~~fans----~s~f----------~l 98 (212)
T 1tue_A 43 TFLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQG----------AVISFVNS----TSHF----------WL 98 (212)
T ss_dssp HHHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHTC----------EECCCCCS----SSCG----------GG
T ss_pred HHHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhCC----------CeeeEEec----cchh----------hh
Confidence 3445555555543 3456999999999999999999999832 22211000 0000 01
Q ss_pred HHHHhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCC---------------ceEEEEeeChHHHHhhhhcChhh
Q 003094 283 EEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARG---------------ELQCIGATTLDEYRKHIEKDPAL 347 (848)
Q Consensus 283 ~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~---------------~v~vI~atn~~~~~~~~~~d~al 347 (848)
..+. +..|++|||++.-. ...+...++.+++.. ...+|.|||..-.. ...-+.|
T Consensus 99 ~~l~--~~kIiiLDEad~~~-------~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~--~~~~~~L 167 (212)
T 1tue_A 99 EPLT--DTKVAMLDDATTTC-------WTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAK--DNRWPYL 167 (212)
T ss_dssp GGGT--TCSSEEEEEECHHH-------HHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTS--SSSCHHH
T ss_pred cccC--CCCEEEEECCCchh-------HHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCccc--ccchhhh
Confidence 1111 12388999998532 122334566665532 35788889874321 1223678
Q ss_pred hcccCCCcCCCCC
Q 003094 348 ERRFQPVKVPEPS 360 (848)
Q Consensus 348 ~~Rf~~i~~~~p~ 360 (848)
.+|+..+.|+.|-
T Consensus 168 ~SRi~~f~F~~~~ 180 (212)
T 1tue_A 168 ESRITVFEFPNAF 180 (212)
T ss_dssp HTSCEEEECCSCC
T ss_pred hhhEEEEEcCCCC
Confidence 8899877776543
No 190
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.31 E-value=3.4e-07 Score=98.11 Aligned_cols=106 Identities=23% Similarity=0.246 Sum_probs=62.1
Q ss_pred eEEEeecCCcchHHHHHHHHHHHhc-CCCCceEEecccccccccchhcccCCCCCCcccccccchhHHHHcCCCeEEEEc
Q 003094 562 ASFIFSGPTGVGKSELAKALAAYYF-GSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFD 640 (848)
Q Consensus 562 ~~lLl~Gp~GtGKT~lA~~la~~l~-~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~Vl~lD 640 (848)
.+++|+||||||||++|++++..+. ..+.+++.++++.+... +..... .+ ....+...+... .+||||
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~-----l~~~~~--~~--~~~~~~~~~~~~--~lLiiD 221 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAID-----VKNAIS--NG--SVKEEIDAVKNV--PVLILD 221 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHH-----HHCCCC--------CCTTHHHHTS--SEEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHH-----HHHHhc--cc--hHHHHHHHhcCC--CEEEEc
Confidence 4699999999999999999999886 66677777777665432 111100 00 012234445544 499999
Q ss_pred CCCcCC--hHHHHHHHh-hhcCcEEEcCCCceeecCCeEEEEecCCCchhh
Q 003094 641 EIEKAH--PDVFNMMLQ-ILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVI 688 (848)
Q Consensus 641 Eid~l~--~~~~~~Ll~-~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~i 688 (848)
|++..+ +..++.|+. +++... ..+..+|+|||.....+
T Consensus 222 dig~~~~~~~~~~~ll~~ll~~r~----------~~~~~~IitSN~~~~~l 262 (308)
T 2qgz_A 222 DIGAEQATSWVRDEVLQVILQYRM----------LEELPTFFTSNYSFADL 262 (308)
T ss_dssp TCCC------CTTTTHHHHHHHHH----------HHTCCEEEEESSCHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHH----------HCCCcEEEECCCCHHHH
Confidence 996543 333332322 443210 01336889999766543
No 191
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.29 E-value=3e-06 Score=92.17 Aligned_cols=165 Identities=14% Similarity=0.180 Sum_probs=97.6
Q ss_pred ccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccc------ccc
Q 003094 531 KRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFM------ERH 604 (848)
Q Consensus 531 ~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~------~~~ 604 (848)
..++|.+..++.|.+.+.. + ..++++||+|+|||++++.+++.. + .+.+++.... ...
T Consensus 12 ~~~~gR~~el~~L~~~l~~---~--------~~v~i~G~~G~GKT~Ll~~~~~~~---~--~~~~~~~~~~~~~~~~~~~ 75 (350)
T 2qen_A 12 EDIFDREEESRKLEESLEN---Y--------PLTLLLGIRRVGKSSLLRAFLNER---P--GILIDCRELYAERGHITRE 75 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHH---C--------SEEEEECCTTSSHHHHHHHHHHHS---S--EEEEEHHHHHHTTTCBCHH
T ss_pred HhcCChHHHHHHHHHHHhc---C--------CeEEEECCCcCCHHHHHHHHHHHc---C--cEEEEeecccccccCCCHH
Confidence 4588999999888887763 1 258999999999999999999875 2 6667765432 100
Q ss_pred c-hh---cccCC-----------------CCCCcccccccchhHHHH----cCCCeEEEEcCCCcCCh-------HHHHH
Q 003094 605 T-VS---KLIGS-----------------PPGYVGYTEGGQLTEAVR----RRPYTVVLFDEIEKAHP-------DVFNM 652 (848)
Q Consensus 605 ~-~~---~l~g~-----------------~~g~~g~~~~~~l~~~~~----~~~~~Vl~lDEid~l~~-------~~~~~ 652 (848)
. .. ..++. .... .......+...+. ...+.+|+|||++.+.. ++...
T Consensus 76 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~ 154 (350)
T 2qen_A 76 ELIKELQSTISPFQKFQSKFKISLNLKFLTLEP-RKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLAL 154 (350)
T ss_dssp HHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCG-GGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHhHhhhceeEEEecceeecc-ccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHH
Confidence 0 00 11110 0000 0011122233332 22378999999999764 66676
Q ss_pred HHhhhcCcEEEcCCCceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHH--hhcChhhhhc
Q 003094 653 MLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELK--QYFRPEFLNR 730 (848)
Q Consensus 653 Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~ll~R 730 (848)
|..+++.. .++.+|+|+..... + ..+. ......+.+|
T Consensus 155 L~~~~~~~------------~~~~~il~g~~~~~-l----------------------------~~~l~~~~~~~~l~~~ 193 (350)
T 2qen_A 155 FAYAYDSL------------PNLKIILTGSEVGL-L----------------------------HDFLKITDYESPLYGR 193 (350)
T ss_dssp HHHHHHHC------------TTEEEEEEESSHHH-H----------------------------HHHHCTTCTTSTTTTC
T ss_pred HHHHHHhc------------CCeEEEEECCcHHH-H----------------------------HHHHhhcCCCCccccC
Confidence 66666531 35677777641110 0 0010 0112345567
Q ss_pred cCeEEEcCCCCHHHHHHHHHHHH
Q 003094 731 LDEMIVFRQLTKLEVKEIADIML 753 (848)
Q Consensus 731 ~d~~i~f~~l~~~el~~I~~~~l 753 (848)
....+.+.||+.++..+++...+
T Consensus 194 ~~~~i~l~pl~~~e~~~~l~~~~ 216 (350)
T 2qen_A 194 IAGEVLVKPFDKDTSVEFLKRGF 216 (350)
T ss_dssp CCEEEECCCCCHHHHHHHHHHHH
T ss_pred ccceeeCCCCCHHHHHHHHHHHH
Confidence 65689999999999998886544
No 192
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.28 E-value=1.3e-06 Score=95.31 Aligned_cols=168 Identities=11% Similarity=0.028 Sum_probs=109.3
Q ss_pred hccCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccccccccchHHHHHHHHHHHHH----hC
Q 003094 213 LGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIK----QS 288 (848)
Q Consensus 213 l~~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~~~~g~~~~~l~~l~~~~~----~~ 288 (848)
+..+-.+.+||+||+|.||++.++.+++.+...... ...++.++ +. .+ ++.+++.+. .+
T Consensus 13 l~~~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~------~~---~~----~~~l~~~~~~~plf~ 75 (343)
T 1jr3_D 13 LNEGLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFE----EHHTFSID------PN---TD----WNAIFSLCQAMSLFA 75 (343)
T ss_dssp HHHCCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCC----EEEEEECC------TT---CC----HHHHHHHHHHHHHCC
T ss_pred HhcCCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCC----eeEEEEec------CC---CC----HHHHHHHhcCcCCcc
Confidence 333445567899999999999999999987532110 11222222 11 11 334444443 24
Q ss_pred CCeEEEEcccch-hhhCCCCCchHHHHHHHhhhhcC--CceEEEEeeChHH-HHhhhhcChhhhcccCCCcCCCCCHHHH
Q 003094 289 DEIILFIDEVHT-LIGAGAAEGAIDAANILKPSLAR--GELQCIGATTLDE-YRKHIEKDPALERRFQPVKVPEPSVDET 364 (848)
Q Consensus 289 ~~~IL~IDEid~-l~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~atn~~~-~~~~~~~d~al~~Rf~~i~~~~p~~~e~ 364 (848)
+..|++|||+|. +.. +..+.|..+++. ...++|.+++..+ ..+...+.+++.+|+..+.|.+++.++.
T Consensus 76 ~~kvvii~~~~~kl~~--------~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l 147 (343)
T 1jr3_D 76 SRQTLLLLLPENGPNA--------AINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQL 147 (343)
T ss_dssp SCEEEEEECCSSCCCT--------THHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHH
T ss_pred CCeEEEEECCCCCCCh--------HHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHH
Confidence 567999999998 732 367778888874 3455555554321 1111245688899999999999999998
Q ss_pred HHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcccccCCChhhHHHHHHHH
Q 003094 365 IQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEA 415 (848)
Q Consensus 365 ~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~~~~~~~p~~a~~ll~~a 415 (848)
...++..++ ..++.++++++..++..+.+.. ..+...++..
T Consensus 148 ~~~l~~~~~----~~g~~i~~~a~~~l~~~~~gdl------~~~~~elekl 188 (343)
T 1jr3_D 148 PRWVAARAK----QLNLELDDAANQVLCYCYEGNL------LALAQALERL 188 (343)
T ss_dssp HHHHHHHHH----HTTCEECHHHHHHHHHSSTTCH------HHHHHHHHHH
T ss_pred HHHHHHHHH----HcCCCCCHHHHHHHHHHhchHH------HHHHHHHHHH
Confidence 888887766 4678899999999998876632 3355555544
No 193
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.26 E-value=6.6e-07 Score=89.17 Aligned_cols=133 Identities=16% Similarity=0.144 Sum_probs=72.4
Q ss_pred CcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCC-ceEEEEeCCccccccc--------ccchHHH--HHHHHHHHH--H
Q 003094 220 NPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEG-KKVITLDMGLLVAGTK--------YRGEFEE--RLKKLMEEI--K 286 (848)
Q Consensus 220 ~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~-~~v~~~~~~~l~~~~~--------~~g~~~~--~l~~l~~~~--~ 286 (848)
-.|++|+||+|||++|..++.....- -+. -.| .+++..++..+..+.. +.....+ ....+.+.+ .
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~~~~-~~~-~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~ 84 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMANDEMF-KPD-ENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKP 84 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCGGG-SCC-TTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSG
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhh-ccc-ccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhcc
Confidence 45799999999999988876553100 000 124 5566666554432110 0000000 011222221 2
Q ss_pred hCCCeEEEEcccchhhhCCC-CCchHHHHHHHhhhhcCCceEEEEeeChHHHHhhhhcChhhhcccC-CCcCCCCC
Q 003094 287 QSDEIILFIDEVHTLIGAGA-AEGAIDAANILKPSLARGELQCIGATTLDEYRKHIEKDPALERRFQ-PVKVPEPS 360 (848)
Q Consensus 287 ~~~~~IL~IDEid~l~~~~~-~~~~~~~~~~L~~~l~~~~v~vI~atn~~~~~~~~~~d~al~~Rf~-~i~~~~p~ 360 (848)
.+.++||+|||++.+++.+. ..........|. .-....+.+|.+|+++. .++.+++.|+. .+.+..|.
T Consensus 85 ~~~~~vliIDEAq~l~~~~~~~~e~~rll~~l~-~~r~~~~~iil~tq~~~-----~l~~~lr~ri~~~~~l~~~~ 154 (199)
T 2r2a_A 85 ENIGSIVIVDEAQDVWPARSAGSKIPENVQWLN-THRHQGIDIFVLTQGPK-----LLDQNLRTLVRKHYHIASNK 154 (199)
T ss_dssp GGTTCEEEETTGGGTSBCCCTTCCCCHHHHGGG-GTTTTTCEEEEEESCGG-----GBCHHHHTTEEEEEEEEECS
T ss_pred ccCceEEEEEChhhhccCccccchhHHHHHHHH-hcCcCCeEEEEECCCHH-----HHhHHHHHHhheEEEEcCcc
Confidence 34578999999999976542 111222222221 11234567788888865 68999999996 66666543
No 194
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=98.21 E-value=1.9e-06 Score=81.19 Aligned_cols=61 Identities=18% Similarity=0.181 Sum_probs=56.8
Q ss_pred HhhHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHhhCCCchHHHHHHHcCCChHHHHHHHH
Q 003094 94 RFTEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRTQVI 154 (848)
Q Consensus 94 ~~t~~a~~~l~~A~~~A~~~~~~~i~~eHlLlall~~~~~~a~~iL~~~gv~~~~l~~~~~ 154 (848)
.||+.++++++.|..+|+.+|++||++||||+||++++++.+..+|+.+|++.+.++..+.
T Consensus 79 ~~s~~~~~~l~~A~~~A~~~~~~~i~~ehLLlall~~~~~~~~~iL~~~gi~~~~l~~~i~ 139 (143)
T 1k6k_A 79 QPTLSFQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFIS 139 (143)
T ss_dssp EECHHHHHHHHHHHHHHHSSSCSCBCHHHHHHHHTTCTTSHHHHHHHHTTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhCcCcHHHHHHHHcCCCHHHHHHHHH
Confidence 4799999999999999999999999999999999998888889999999999999987653
No 195
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.16 E-value=8.5e-06 Score=88.76 Aligned_cols=167 Identities=14% Similarity=0.169 Sum_probs=97.0
Q ss_pred ccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccc-----cccc
Q 003094 531 KRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFM-----ERHT 605 (848)
Q Consensus 531 ~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~-----~~~~ 605 (848)
..++|.+..++.+.+ +.. ..++++||+|+|||++++.+++.. ....+.+++.... ....
T Consensus 13 ~~~~gR~~el~~L~~-l~~------------~~v~i~G~~G~GKT~L~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 76 (357)
T 2fna_A 13 KDFFDREKEIEKLKG-LRA------------PITLVLGLRRTGKSSIIKIGINEL---NLPYIYLDLRKFEERNYISYKD 76 (357)
T ss_dssp GGSCCCHHHHHHHHH-TCS------------SEEEEEESTTSSHHHHHHHHHHHH---TCCEEEEEGGGGTTCSCCCHHH
T ss_pred HHhcChHHHHHHHHH-hcC------------CcEEEECCCCCCHHHHHHHHHHhc---CCCEEEEEchhhccccCCCHHH
Confidence 457888888777766 431 258999999999999999999886 2346677776531 1000
Q ss_pred h-h-----------------cccCCCCC----Ccc---------cccccchhHHHHcC--CCeEEEEcCCCcCC----hH
Q 003094 606 V-S-----------------KLIGSPPG----YVG---------YTEGGQLTEAVRRR--PYTVVLFDEIEKAH----PD 648 (848)
Q Consensus 606 ~-~-----------------~l~g~~~g----~~g---------~~~~~~l~~~~~~~--~~~Vl~lDEid~l~----~~ 648 (848)
. . .+++...+ ..+ ...-..+.+.+.+. .+.+|+|||++.+. ++
T Consensus 77 ~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~ 156 (357)
T 2fna_A 77 FLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVN 156 (357)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCC
T ss_pred HHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchh
Confidence 0 0 01111000 000 00112344444442 36899999999975 35
Q ss_pred HHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCchhhhccCcccccccCCCcccccHHHHHHHHHHHHH--hhcChh
Q 003094 649 VFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELK--QYFRPE 726 (848)
Q Consensus 649 ~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~ 726 (848)
+...|..+++.. .++.+|+|++.... + ..+. ......
T Consensus 157 ~~~~l~~~~~~~------------~~~~~i~~g~~~~~-l----------------------------~~~l~~~~~~~~ 195 (357)
T 2fna_A 157 LLPALAYAYDNL------------KRIKFIMSGSEMGL-L----------------------------YDYLRVEDPESP 195 (357)
T ss_dssp CHHHHHHHHHHC------------TTEEEEEEESSHHH-H----------------------------HHHTTTTCTTST
T ss_pred HHHHHHHHHHcC------------CCeEEEEEcCchHH-H----------------------------HHHHhccCCCCc
Confidence 666665555431 25567777652110 0 0000 011234
Q ss_pred hhhccCeEEEcCCCCHHHHHHHHHHHHH
Q 003094 727 FLNRLDEMIVFRQLTKLEVKEIADIMLK 754 (848)
Q Consensus 727 ll~R~d~~i~f~~l~~~el~~I~~~~l~ 754 (848)
+.+|....+.+.||+.++..+++...+.
T Consensus 196 l~~r~~~~i~l~~l~~~e~~~~l~~~~~ 223 (357)
T 2fna_A 196 LFGRAFSTVELKPFSREEAIEFLRRGFQ 223 (357)
T ss_dssp TTTCCCEEEEECCCCHHHHHHHHHHHHH
T ss_pred cccCccceeecCCCCHHHHHHHHHHHHH
Confidence 5667667899999999999998876554
No 196
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.09 E-value=2.3e-06 Score=84.27 Aligned_cols=97 Identities=19% Similarity=0.358 Sum_probs=53.4
Q ss_pred eEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhcccCCCCCCcccccccchhHHHHcCCCeEEEEcC
Q 003094 562 ASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDE 641 (848)
Q Consensus 562 ~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDE 641 (848)
.+++|+||||||||++|.++++.+.+. .+.+ .+.. +. + ....+ ....+++|||
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l~g~---i~~f-----ans~--s~-------f--------~l~~l--~~~kIiiLDE 111 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFIQGA---VISF-----VNST--SH-------F--------WLEPL--TDTKVAMLDD 111 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHHTCE---ECCC-----CCSS--SC-------G--------GGGGG--TTCSSEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCC---eeeE-----Eecc--ch-------h--------hhccc--CCCCEEEEEC
Confidence 359999999999999999999998431 1111 0000 00 0 00001 1234899999
Q ss_pred CCcCChH-HHHHHHhhhcCcEEEc-CCC-ceeecCCeEEEEecCCCc
Q 003094 642 IEKAHPD-VFNMMLQILEDGRLTD-SKG-RTVDFKNTLLIMTSNVGS 685 (848)
Q Consensus 642 id~l~~~-~~~~Ll~~le~g~~~~-~~g-~~v~~~~~iiI~tsN~~~ 685 (848)
++...-+ +...+..+|+...+.. ... ..+.....-+|+|||...
T Consensus 112 ad~~~~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~ 158 (212)
T 1tue_A 112 ATTTCWTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHP 158 (212)
T ss_dssp ECHHHHHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCT
T ss_pred CCchhHHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCc
Confidence 9865333 3345666666543221 111 111223447889999543
No 197
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.07 E-value=3.4e-06 Score=89.23 Aligned_cols=107 Identities=21% Similarity=0.339 Sum_probs=62.3
Q ss_pred CCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccccccccchHHHHHHHHHHHHHhCCCeEEEEc
Q 003094 217 TKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFID 296 (848)
Q Consensus 217 ~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~IL~ID 296 (848)
....++|+||||+|||+++..++... .. ...++.+........ +..+.+..+..+.+.+.+.+ +||||
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~~-G~-------~VlyIs~~~eE~v~~--~~~~le~~l~~i~~~l~~~~--LLVID 189 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEAL-GG-------KDKYATVRFGEPLSG--YNTDFNVFVDDIARAMLQHR--VIVID 189 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHHH-HT-------TSCCEEEEBSCSSTT--CBCCHHHHHHHHHHHHHHCS--EEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhC-CC-------CEEEEEecchhhhhh--hhcCHHHHHHHHHHHHhhCC--EEEEe
Confidence 34456899999999999999999872 11 112333311222211 22455666666777776655 99999
Q ss_pred ccchhhhCCCCC-------c-hHHHHHHHhhhhcCCceEEEEeeChH
Q 003094 297 EVHTLIGAGAAE-------G-AIDAANILKPSLARGELQCIGATTLD 335 (848)
Q Consensus 297 Eid~l~~~~~~~-------~-~~~~~~~L~~~l~~~~v~vI~atn~~ 335 (848)
+++.+....... . -......|..++...++.+|+++|+.
T Consensus 190 sI~aL~~~~~~~s~~G~v~~~lrqlL~~L~~~~k~~gvtVIlttnp~ 236 (331)
T 2vhj_A 190 SLKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLNPT 236 (331)
T ss_dssp CCTTTC-----------CCHHHHHHHHHHHHHHHHHTCEEEEECCCS
T ss_pred cccccccccccccccchHHHHHHHHHHHHHHHHhhCCCEEEEEeCCc
Confidence 999986432220 0 12333444444455567788888854
No 198
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=98.03 E-value=7.3e-06 Score=77.57 Aligned_cols=61 Identities=30% Similarity=0.502 Sum_probs=55.5
Q ss_pred HhhHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHhhCCCchHHHHHHHcCCChHHHHHHHHH
Q 003094 94 RFTEKAIKVIMLAQEEARRLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRTQVIR 155 (848)
Q Consensus 94 ~~t~~a~~~l~~A~~~A~~~~~~~i~~eHlLlall~~~~~~a~~iL~~~gv~~~~l~~~~~~ 155 (848)
.||+.+++++..|..+|+.+|+++|++||||+|++ ++++.+..+|+.+|++.+.++..+.+
T Consensus 82 ~~s~~~~~vl~~A~~~a~~~~~~~i~~ehlLlall-~~~~~~~~~L~~~gi~~~~l~~~l~~ 142 (148)
T 1khy_A 82 QPSQDLVRVLNLCDKLAQKRGDNFISSELFVLAAL-ESRGTLADILKAAGATTANITQAIEQ 142 (148)
T ss_dssp CBCHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHH-TSCHHHHHHHHHTTCCHHHHHHHHHC
T ss_pred CcCHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHH-cCCcHHHHHHHHcCCCHHHHHHHHHH
Confidence 47999999999999999999999999999999999 55677899999999999999887643
No 199
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.94 E-value=0.00012 Score=85.94 Aligned_cols=173 Identities=17% Similarity=0.139 Sum_probs=94.3
Q ss_pred cCCCCCccCChHHHHHHHHHhcc--CCCCCcEEECCCCCcHHHHHHHHHHHhh--CCCCCCCCCCceEEEEeCCcccc--
Q 003094 193 EGKLDPVVGRQPQIERVVQILGR--RTKNNPCLIGEPGVGKTAIAEGLAQRIA--SGDVPDTIEGKKVITLDMGLLVA-- 266 (848)
Q Consensus 193 ~~~ld~iiG~~~~~~~l~~~l~~--~~~~~iLL~GppGtGKT~la~~la~~l~--~~~~~~~l~~~~v~~~~~~~l~~-- 266 (848)
|.....++|++.++++|.+.+.. ...+-++|+||+|+|||++|..+++... ....+ ..+++++++....
T Consensus 120 P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~-----~~v~wv~~~~~~~~~ 194 (591)
T 1z6t_A 120 PQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFP-----GGVHWVSVGKQDKSG 194 (591)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCT-----TCEEEEEEESCCHHH
T ss_pred CCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCC-----CceEEEECCCCchHH
Confidence 45567799999999999999874 2344578999999999999999875321 10011 1244554432100
Q ss_pred ------------c------ccccchHHHHHHHHHHHHHh-CCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCCceE
Q 003094 267 ------------G------TKYRGEFEERLKKLMEEIKQ-SDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQ 327 (848)
Q Consensus 267 ------------~------~~~~g~~~~~l~~l~~~~~~-~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~~v~ 327 (848)
+ .......+.....+...+.. ..+++|+||+++... .+.. + ..+..
T Consensus 195 ~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~-------------~l~~-l-~~~~~ 259 (591)
T 1z6t_A 195 LLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSW-------------VLKA-F-DSQCQ 259 (591)
T ss_dssp HHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHH-------------HHHT-T-CSSCE
T ss_pred HHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHH-------------HHHH-h-cCCCe
Confidence 0 00011112222223233332 268999999997531 2222 2 34566
Q ss_pred EEEeeChHHHHhhhhcChhhhcccCCCcC---CCCCHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHhhhhcc
Q 003094 328 CIGATTLDEYRKHIEKDPALERRFQPVKV---PEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQY 398 (848)
Q Consensus 328 vI~atn~~~~~~~~~~d~al~~Rf~~i~~---~~p~~~e~~~Il~~~~~~~~~~~~~~~s~~~l~~l~~~s~~~ 398 (848)
||.||...... ..+.. ..+.+ ..++.++..+++...... ...-.++....+++.+.|.
T Consensus 260 ilvTsR~~~~~------~~~~~--~~~~v~~l~~L~~~ea~~L~~~~~~~-----~~~~~~~~~~~i~~~~~G~ 320 (591)
T 1z6t_A 260 ILLTTRDKSVT------DSVMG--PKYVVPVESSLGKEKGLEILSLFVNM-----KKADLPEQAHSIIKECKGS 320 (591)
T ss_dssp EEEEESCGGGG------TTCCS--CEEEEECCSSCCHHHHHHHHHHHHTS-----CGGGSCTHHHHHHHHHTTC
T ss_pred EEEECCCcHHH------HhcCC--CceEeecCCCCCHHHHHHHHHHHhCC-----CcccccHHHHHHHHHhCCC
Confidence 77777654321 01101 12222 468899988888765431 1111234556666666554
No 200
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.87 E-value=4.5e-05 Score=78.71 Aligned_cols=128 Identities=15% Similarity=0.237 Sum_probs=73.3
Q ss_pred HHHHHHHhccC-C-CCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccccccccchHHHHHHHHHH
Q 003094 206 IERVVQILGRR-T-KNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEERLKKLME 283 (848)
Q Consensus 206 ~~~l~~~l~~~-~-~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~~~~g~~~~~l~~l~~ 283 (848)
..-+..++... + +++++|+||||||||+++.+||+.+.. .-.++.+. ... .+.
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~~l-----------~G~vn~~~----~~f----------~l~ 144 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTVPF-----------YGCVNWTN----ENF----------PFN 144 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHSSC-----------EEECCTTC----SSC----------TTG
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhhcc-----------cceeeccc----ccc----------ccc
Confidence 34466666654 4 456999999999999999999997521 00111110 000 011
Q ss_pred HHHhCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhc--------C-------CceEEEEeeChHHHH------hhhh
Q 003094 284 EIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLA--------R-------GELQCIGATTLDEYR------KHIE 342 (848)
Q Consensus 284 ~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~--------~-------~~v~vI~atn~~~~~------~~~~ 342 (848)
.+ ....|++.||....- +..+.++.+++ . ....+|.+||..-.. ....
T Consensus 145 ~~--~~k~i~l~Ee~~~~~---------d~~~~lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~~i~~~~~g~~~s~~ 213 (267)
T 1u0j_A 145 DC--VDKMVIWWEEGKMTA---------KVVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNSTTFE 213 (267)
T ss_dssp GG--SSCSEEEECSCCEET---------TTHHHHHHHHTTCCEEC------CCEECCCCEEEEESSCTTCEEETTEEECT
T ss_pred cc--cccEEEEeccccchh---------HHHHHHHHHhCCCcEEEecCcCCcccccCCCEEEEecCCcccccccCccchh
Confidence 11 223466667666542 13444555554 1 235778888873211 0013
Q ss_pred cChhhhcccCCCcCC--------CCCHHHHHHHHH
Q 003094 343 KDPALERRFQPVKVP--------EPSVDETIQILK 369 (848)
Q Consensus 343 ~d~al~~Rf~~i~~~--------~p~~~e~~~Il~ 369 (848)
..++|.+|+..+.|+ +.+.++....+.
T Consensus 214 ~~~~L~sR~~~f~F~~~~p~~~~~lt~~~~~~f~~ 248 (267)
T 1u0j_A 214 HQQPLQDRMFKFELTRRLDHDFGKVTKQEVKDFFR 248 (267)
T ss_dssp THHHHHTTEEEEECCSCCCTTSCCCCHHHHHHHHH
T ss_pred hhHHHhhhEEEEECCCcCCcccCCCCHHHHHHHHH
Confidence 457899988766666 677777777776
No 201
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.86 E-value=2.4e-05 Score=76.97 Aligned_cols=96 Identities=13% Similarity=0.182 Sum_probs=49.4
Q ss_pred EEEeecCCcchHHHHHHHHHHHhcCCCCceEEeccc--ccccccchhcccCCCCCCcccccccchhHHHHcCCCeEEEEc
Q 003094 563 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMS--EFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFD 640 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~--~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~Vl~lD 640 (848)
.++++||+|+|||+++..++..+...+.....+... .-.....+....|.............+.+.+. .+..+|+||
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d~r~~~~~i~s~~g~~~~~~~~~~~~~~~~~~~-~~~dvviID 83 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDSRYHSTMIVSHSGNGVEAHVIERPEEMRKYIE-EDTRGVFID 83 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-----CCCEECC----CEECEEESSGGGGGGGCC-TTEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeeccccccCcccEEecCCCceeeEEECCHHHHHHHhc-CCCCEEEEE
Confidence 368999999999999865555443333333322111 00000011111111100111111112222222 245799999
Q ss_pred CCCcCChHHHHHHHhhhcC
Q 003094 641 EIEKAHPDVFNMMLQILED 659 (848)
Q Consensus 641 Eid~l~~~~~~~Ll~~le~ 659 (848)
|++.+++++++.|..+.+.
T Consensus 84 E~Q~~~~~~~~~l~~l~~~ 102 (184)
T 2orw_A 84 EVQFFNPSLFEVVKDLLDR 102 (184)
T ss_dssp CGGGSCTTHHHHHHHHHHT
T ss_pred CcccCCHHHHHHHHHHHHC
Confidence 9999999999888888876
No 202
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.80 E-value=6.4e-05 Score=73.45 Aligned_cols=24 Identities=38% Similarity=0.772 Sum_probs=21.7
Q ss_pred CcEEECCCCCcHHHHHHHHHHHhh
Q 003094 220 NPCLIGEPGVGKTAIAEGLAQRIA 243 (848)
Q Consensus 220 ~iLL~GppGtGKT~la~~la~~l~ 243 (848)
++.|+||+|+||||+++.|+..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999874
No 203
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.78 E-value=4.5e-05 Score=75.82 Aligned_cols=81 Identities=15% Similarity=0.151 Sum_probs=45.0
Q ss_pred EEEeecCCcchHHHHHHHHHHHhc-----CCC-CceEEecccccccccchhcccCCC---CCCcccc-cccchhHHH--H
Q 003094 563 SFIFSGPTGVGKSELAKALAAYYF-----GSE-EAMIRLDMSEFMERHTVSKLIGSP---PGYVGYT-EGGQLTEAV--R 630 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l~-----~~~-~~~i~i~~~~~~~~~~~~~l~g~~---~g~~g~~-~~~~l~~~~--~ 630 (848)
..|++|+||+|||++|..+..... ..+ .+++..++..+...... . .... ....... ....+.+.+ .
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~-~-~~~k~~~~~~~~~~~~~~~~~~~~~~~ 84 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTY-I-ETDAKKLPKSTDEQLSAHDMYEWIKKP 84 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEE-E-ECCTTTCSSCCSSCEEGGGHHHHTTSG
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccc-c-chhhhhccccCcccccHHHHHHHhhcc
Confidence 478999999999999988765532 334 55656666655322210 0 0000 0000110 012333432 2
Q ss_pred cCCCeEEEEcCCCcC
Q 003094 631 RRPYTVVLFDEIEKA 645 (848)
Q Consensus 631 ~~~~~Vl~lDEid~l 645 (848)
...++||||||++.+
T Consensus 85 ~~~~~vliIDEAq~l 99 (199)
T 2r2a_A 85 ENIGSIVIVDEAQDV 99 (199)
T ss_dssp GGTTCEEEETTGGGT
T ss_pred ccCceEEEEEChhhh
Confidence 344789999999998
No 204
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.78 E-value=5e-05 Score=96.86 Aligned_cols=89 Identities=16% Similarity=0.106 Sum_probs=65.4
Q ss_pred HHHHhc-c--CCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccc----------cccccch--
Q 003094 209 VVQILG-R--RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVA----------GTKYRGE-- 273 (848)
Q Consensus 209 l~~~l~-~--~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~----------~~~~~g~-- 273 (848)
+-.+++ . +..+.+++|||||||||++|.+++.+.... +-+.++++...... -.++.++
T Consensus 1070 lD~~lg~GG~p~g~~~l~~G~~g~GKT~la~~~~~~~~~~-------g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~ 1142 (1706)
T 3cmw_A 1070 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-------GKTCAFIDAEHALDPIYARKLGVDIDNLLCSQP 1142 (1706)
T ss_dssp HHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHT-------TCCEEEECTTSCCCHHHHHHTTCCGGGCEEECC
T ss_pred HHHHhccCCCCCCCEEEEEcCCCCChHHHHHHHHHHhhhc-------CCceeEEEcccchHHHHHHHhCCCHHHHhhccc
Confidence 444553 2 233448999999999999999999877542 34566666554220 1345566
Q ss_pred --HHHHHHHHHHHHHhCCCeEEEEcccchhhhC
Q 003094 274 --FEERLKKLMEEIKQSDEIILFIDEVHTLIGA 304 (848)
Q Consensus 274 --~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~ 304 (848)
.|+.+..++..+++..++++|+|+++.|++.
T Consensus 1143 ~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~~~ 1175 (1706)
T 3cmw_A 1143 DTGEQALEICDALARSGAVDVIVVDSVAALTPK 1175 (1706)
T ss_dssp SSHHHHHHHHHHHHHHTCCSEEEESCGGGCCCH
T ss_pred cchHHHHHHHHHHHHhcCCeEEEeCchHhcCcc
Confidence 7888988888888889999999999999876
No 205
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.65 E-value=0.00016 Score=81.91 Aligned_cols=60 Identities=15% Similarity=0.316 Sum_probs=41.2
Q ss_pred hhhhhhhhhcCCCCCcc-CChHHHHHHHHHhccCCCCCcEEECCCCCcHHHHHHHHHHHhhC
Q 003094 184 GTNLTKLAEEGKLDPVV-GRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIAS 244 (848)
Q Consensus 184 ~~~l~~~~~~~~ld~ii-G~~~~~~~l~~~l~~~~~~~iLL~GppGtGKT~la~~la~~l~~ 244 (848)
..+|.++++|..++.+- +|...+..+...+.... .+++|.|+||||||+++..++..+..
T Consensus 11 ~~~~~~~~~p~~~~~Ln~~Q~~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l~~ 71 (459)
T 3upu_A 11 SSGLVPRGSHMTFDDLTEGQKNAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEALIS 71 (459)
T ss_dssp ----------CCSSCCCHHHHHHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred cCCCccccCCCccccCCHHHHHHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 34688899999999886 67777777777766544 38899999999999999999998865
No 206
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.56 E-value=0.00027 Score=68.90 Aligned_cols=23 Identities=35% Similarity=0.624 Sum_probs=21.2
Q ss_pred EEEeecCCcchHHHHHHHHHHHh
Q 003094 563 SFIFSGPTGVGKSELAKALAAYY 585 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l 585 (848)
.+.|.||+|+||||+.+.|+..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999987
No 207
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.52 E-value=0.00029 Score=70.65 Aligned_cols=153 Identities=18% Similarity=0.198 Sum_probs=82.5
Q ss_pred ceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhcccCC---CCC---Ccccccc-cchhHHHHcCC
Q 003094 561 IASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGS---PPG---YVGYTEG-GQLTEAVRRRP 633 (848)
Q Consensus 561 ~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~---~~g---~~g~~~~-~~l~~~~~~~~ 633 (848)
...+++.|++|||||+++-.+|..+...+...+.+++...........+-|- +.. |.|.... ..+...+.. .
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~al~~gl~~~~~~~~~~~~~~~~e~~l~~~L~~-~ 84 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETEALLNGLPQQPLLRTEYRGMTLEEMDLDALLKA-A 84 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHHHHHTTSCBCCCEEEEETTEEEEECCHHHHHHH-C
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHHHHhcCccccCcceeecCCcccccccHHHHHhc-C
Confidence 4568999999999999999999887655666666666442221111111111 111 1111111 334444443 4
Q ss_pred CeEEEEcCCCcCCh------HHHHHHHhhhcCcEEEcCCCceeecCCeEEEEecCCCch-hhhccCcccccccCCCcccc
Q 003094 634 YTVVLFDEIEKAHP------DVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSS-VIEKGGRRIGFDLDYDEKDS 706 (848)
Q Consensus 634 ~~Vl~lDEid~l~~------~~~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~-~i~~~~~~~~f~~~~~~~~~ 706 (848)
+.++++||+-..+. ..+.-+...++.|. =++.|+|.... .+..
T Consensus 85 pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgi--------------dVitT~Nlqh~esl~d---------------- 134 (228)
T 2r8r_A 85 PSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGI--------------DVYTTVNVQHLESLND---------------- 134 (228)
T ss_dssp CSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTC--------------EEEEEEEGGGBGGGHH----------------
T ss_pred CCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCC--------------CEEEEccccccccHHH----------------
Confidence 67999999886532 24444444555541 36688884321 0000
Q ss_pred cHHHHHHHHHHHHHhhcChhhhhccCeEEEcCCCCHHHHHHH
Q 003094 707 SYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEI 748 (848)
Q Consensus 707 ~~~~~~~~~~~~l~~~~~~~ll~R~d~~i~f~~l~~~el~~I 748 (848)
....+......+.++..++.+.|. |.+-.++++++.+-
T Consensus 135 ---~v~~itg~~v~e~vpd~~~~~a~~-v~lvD~~p~~l~~r 172 (228)
T 2r8r_A 135 ---QVRGITGVQVRETLPDWVLQEAFD-LVLIDLPPRELLER 172 (228)
T ss_dssp ---HHHHHHSCCCCSCBCHHHHHTCSE-EEEBCCCHHHHHHH
T ss_pred ---HHHHHcCCCcCCcCccHHHhhCCe-EEEecCCHHHHHHH
Confidence 000000111224467778888865 66777778875544
No 208
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.51 E-value=0.00065 Score=86.70 Aligned_cols=156 Identities=16% Similarity=0.118 Sum_probs=89.0
Q ss_pred hhcCCCCCccCChHHHHHHHHHhcc--CCCCCcEEECCCCCcHHHHHHHHHHHhh--CCCCCCCCCCceEEEEeCCcccc
Q 003094 191 AEEGKLDPVVGRQPQIERVVQILGR--RTKNNPCLIGEPGVGKTAIAEGLAQRIA--SGDVPDTIEGKKVITLDMGLLVA 266 (848)
Q Consensus 191 ~~~~~ld~iiG~~~~~~~l~~~l~~--~~~~~iLL~GppGtGKT~la~~la~~l~--~~~~~~~l~~~~v~~~~~~~l~~ 266 (848)
.-|.....++|+++++++|.+.|.. ...+-+.|+|++|+|||+||..+++... .... ...+++++++....
T Consensus 118 ~~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~ 192 (1249)
T 3sfz_A 118 GVPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCF-----SGGVHWVSIGKQDK 192 (1249)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTS-----TTCEEEEECCSCCH
T ss_pred CCCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhC-----CCeEEEEEECCcCc
Confidence 3455567799999999999999853 2334467999999999999998886531 1111 12356666544210
Q ss_pred c-------------------ccccchHHHHHHHHHHHHHh--CCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCCc
Q 003094 267 G-------------------TKYRGEFEERLKKLMEEIKQ--SDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGE 325 (848)
Q Consensus 267 ~-------------------~~~~g~~~~~l~~l~~~~~~--~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~~ 325 (848)
. ..........+...+..... ..+.+|+||+++... .+..+ ..+
T Consensus 193 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~-------------~~~~~--~~~ 257 (1249)
T 3sfz_A 193 SGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW-------------VLKAF--DNQ 257 (1249)
T ss_dssp HHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH-------------HHTTT--CSS
T ss_pred hHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH-------------HHHhh--cCC
Confidence 0 00000111122222222222 337899999998641 23332 234
Q ss_pred eEEEEeeChHHHHhhhhcChhhhcccCCCcCCC-CCHHHHHHHHHHHH
Q 003094 326 LQCIGATTLDEYRKHIEKDPALERRFQPVKVPE-PSVDETIQILKGLR 372 (848)
Q Consensus 326 v~vI~atn~~~~~~~~~~d~al~~Rf~~i~~~~-p~~~e~~~Il~~~~ 372 (848)
..||.||..... -..+...-..+.++. ++.++-.+++....
T Consensus 258 ~~ilvTtR~~~~------~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~ 299 (1249)
T 3sfz_A 258 CQILLTTRDKSV------TDSVMGPKHVVPVESGLGREKGLEILSLFV 299 (1249)
T ss_dssp CEEEEEESSTTT------TTTCCSCBCCEECCSSCCHHHHHHHHHHHH
T ss_pred CEEEEEcCCHHH------HHhhcCCceEEEecCCCCHHHHHHHHHHhh
Confidence 567777765431 111111223567775 88888888887554
No 209
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.48 E-value=0.00035 Score=70.57 Aligned_cols=98 Identities=10% Similarity=0.029 Sum_probs=56.4
Q ss_pred eEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccc-cccchhcccCCCCCCcccccccchhHHHHc----CCCeE
Q 003094 562 ASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFM-ERHTVSKLIGSPPGYVGYTEGGQLTEAVRR----RPYTV 636 (848)
Q Consensus 562 ~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~-~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~----~~~~V 636 (848)
.-++++||+|+|||+++..++..+.+.+...+.+....-. ....+..-+|-............+.+.++. ..+.+
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~~~~dv 92 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFNDETKV 92 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSCTTCCE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHHHHHHhhCCCCCE
Confidence 3477899999999999888877765445555544322110 111111112321111111112345555554 34679
Q ss_pred EEEcCCCcCChHHHHHHHhhhcC
Q 003094 637 VLFDEIEKAHPDVFNMMLQILED 659 (848)
Q Consensus 637 l~lDEid~l~~~~~~~Ll~~le~ 659 (848)
|+|||++.+++++.+.+..+.+.
T Consensus 93 ViIDEaQ~l~~~~ve~l~~L~~~ 115 (223)
T 2b8t_A 93 IGIDEVQFFDDRICEVANILAEN 115 (223)
T ss_dssp EEECSGGGSCTHHHHHHHHHHHT
T ss_pred EEEecCccCcHHHHHHHHHHHhC
Confidence 99999999998877777665543
No 210
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.47 E-value=0.00015 Score=76.75 Aligned_cols=70 Identities=19% Similarity=0.314 Sum_probs=41.6
Q ss_pred EEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhcccCCCCCCccccc--ccchhHHHHcCCCeEEEEc
Q 003094 563 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTE--GGQLTEAVRRRPYTVVLFD 640 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~~g~~~--~~~l~~~~~~~~~~Vl~lD 640 (848)
.++|+||||||||++|..++.. .+....|+.+...+..+. +....+ ...+.+.+.+.. +||||
T Consensus 125 viLI~GpPGsGKTtLAlqlA~~-~G~~VlyIs~~~eE~v~~------------~~~~le~~l~~i~~~l~~~~--LLVID 189 (331)
T 2vhj_A 125 MVIVTGKGNSGKTPLVHALGEA-LGGKDKYATVRFGEPLSG------------YNTDFNVFVDDIARAMLQHR--VIVID 189 (331)
T ss_dssp EEEEECSCSSSHHHHHHHHHHH-HHTTSCCEEEEBSCSSTT------------CBCCHHHHHHHHHHHHHHCS--EEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHh-CCCCEEEEEecchhhhhh------------hhcCHHHHHHHHHHHHhhCC--EEEEe
Confidence 4689999999999999999976 233344555522222100 110000 012344555544 99999
Q ss_pred CCCcCCh
Q 003094 641 EIEKAHP 647 (848)
Q Consensus 641 Eid~l~~ 647 (848)
+++.+.+
T Consensus 190 sI~aL~~ 196 (331)
T 2vhj_A 190 SLKNVIG 196 (331)
T ss_dssp CCTTTC-
T ss_pred ccccccc
Confidence 9998854
No 211
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.44 E-value=0.00034 Score=90.27 Aligned_cols=88 Identities=17% Similarity=0.146 Sum_probs=61.5
Q ss_pred HHHHhc---cCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCccccc--cc------------cc
Q 003094 209 VVQILG---RRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAG--TK------------YR 271 (848)
Q Consensus 209 l~~~l~---~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~--~~------------~~ 271 (848)
|-..|. .++..+++|+||||||||++|.+++..... .+.++.+++....... .+ ..
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~-------~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~ 1487 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR-------EGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQP 1487 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHT-------TTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECC
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHH-------cCCcEEEEEcccccCHHHHHHcCCCchhceeecC
Confidence 444455 577889999999999999999999887654 2566777876643210 00 01
Q ss_pred chHHHHHHHHHHHHHhCCCeEEEEcccchhhh
Q 003094 272 GEFEERLKKLMEEIKQSDEIILFIDEVHTLIG 303 (848)
Q Consensus 272 g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~ 303 (848)
...+..+..+...++...+.+||||+++.+.+
T Consensus 1488 ~~~E~~l~~~~~lvr~~~~~lVVIDsi~al~p 1519 (2050)
T 3cmu_A 1488 DTGEQALEICDALARSGAVDVIVVDSVAALTP 1519 (2050)
T ss_dssp SSHHHHHHHHHHHHHHTCCSEEEESCGGGCCC
T ss_pred ChHHHHHHHHHHHHhcCCCCEEEEcChhHhcc
Confidence 13345555566667778899999999998875
No 212
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.35 E-value=0.0087 Score=66.41 Aligned_cols=77 Identities=19% Similarity=0.167 Sum_probs=49.4
Q ss_pred CCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCccccc------------------ccccchHHHHHH
Q 003094 218 KNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAG------------------TKYRGEFEERLK 279 (848)
Q Consensus 218 ~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~------------------~~~~g~~~~~l~ 279 (848)
+.-++++|++|+||||++..||..+... +.++..+++..+..+ .....+....+.
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~-------G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~ 172 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKR-------GYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAK 172 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTT-------TCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHC-------CCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHH
Confidence 3456789999999999999999988753 566766665433110 011123334445
Q ss_pred HHHHHHHhCCCeEEEEcccchh
Q 003094 280 KLMEEIKQSDEIILFIDEVHTL 301 (848)
Q Consensus 280 ~l~~~~~~~~~~IL~IDEid~l 301 (848)
..+..++..+.=+++||....+
T Consensus 173 ~al~~a~~~~~DvVIIDTaGrl 194 (443)
T 3dm5_A 173 EGVDYFKSKGVDIIIVDTAGRH 194 (443)
T ss_dssp HHHHHHHHTTCSEEEEECCCCS
T ss_pred HHHHHHHhCCCCEEEEECCCcc
Confidence 5666666543448899988654
No 213
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.35 E-value=0.0007 Score=78.49 Aligned_cols=148 Identities=17% Similarity=0.162 Sum_probs=83.1
Q ss_pred cCChHHHHHHHHHhccC---CCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCccc--c--------
Q 003094 200 VGRQPQIERVVQILGRR---TKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLV--A-------- 266 (848)
Q Consensus 200 iG~~~~~~~l~~~l~~~---~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~--~-------- 266 (848)
+|++.++++|.+.|... ...-+.|+|++|+|||++|+.+++.... .+.... ..+++++++... .
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~-~~~~~F--~~~~wv~vs~~~~~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQ-LIGINY--DSIVWLKDSGTAPKSTFDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSS-TBTTTB--SEEEEEECCCCSTTHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhH-HHhccC--CcEEEEEECCCCCCCHHHHHHHH
Confidence 69999999999988654 3345679999999999999999962100 011111 134555655421 0
Q ss_pred ----ccc---------ccchHHHHHHHHHHHHHhCC-CeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCCceEEEEee
Q 003094 267 ----GTK---------YRGEFEERLKKLMEEIKQSD-EIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGAT 332 (848)
Q Consensus 267 ----~~~---------~~g~~~~~l~~l~~~~~~~~-~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~at 332 (848)
+.. ..+.. ..+...+...-... +++|+||+++... .. .+.. ..+..||.||
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~-~~l~~~l~~~L~~~kr~LlVLDdv~~~~----------~~-~~~~---~~gs~ilvTT 272 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTS-VVLKRMICNALIDRPNTLFVFDDVVQEE----------TI-RWAQ---ELRLRCLVTT 272 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCH-HHHHHHHHHHHTTSTTEEEEEEEECCHH----------HH-HHHH---HTTCEEEEEE
T ss_pred HHHHhcCcccccccccccccH-HHHHHHHHHHHcCCCcEEEEEECCCCch----------hh-cccc---cCCCEEEEEc
Confidence 000 00011 11222222222343 8999999998742 11 1111 1456677777
Q ss_pred ChHHHHhhhhcChhhhcccCCCcCCCCCHHHHHHHHHHH
Q 003094 333 TLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGL 371 (848)
Q Consensus 333 n~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~Il~~~ 371 (848)
...... ..+..--..+.++..+.++-.+++...
T Consensus 273 R~~~v~------~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 305 (549)
T 2a5y_B 273 RDVEIS------NAASQTCEFIEVTSLEIDECYDFLEAY 305 (549)
T ss_dssp SBGGGG------GGCCSCEEEEECCCCCHHHHHHHHHHT
T ss_pred CCHHHH------HHcCCCCeEEECCCCCHHHHHHHHHHH
Confidence 654321 111000125788999999988887754
No 214
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.29 E-value=0.00047 Score=78.00 Aligned_cols=113 Identities=20% Similarity=0.331 Sum_probs=63.4
Q ss_pred ChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHhcCCCC-ceEEeccccc----------ccc
Q 003094 535 GQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEE-AMIRLDMSEF----------MER 603 (848)
Q Consensus 535 gq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~-~~i~i~~~~~----------~~~ 603 (848)
+|..++..+...+... . .++++.|++|||||+++..++..+...+. .++.+-...- ...
T Consensus 29 ~Q~~av~~~~~~i~~~-------~---~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~~~~~~ 98 (459)
T 3upu_A 29 GQKNAFNIVMKAIKEK-------K---HHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKLSGKEA 98 (459)
T ss_dssp HHHHHHHHHHHHHHSS-------S---CEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHHHSSCE
T ss_pred HHHHHHHHHHHHHhcC-------C---CEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHhhhccch
Confidence 5777777776666521 1 25899999999999999999988754443 2322211100 000
Q ss_pred cchhcccCCCCCCcccccccch--hHHHHcCCCeEEEEcCCCcCChHHHHHHHhhhcC
Q 003094 604 HTVSKLIGSPPGYVGYTEGGQL--TEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILED 659 (848)
Q Consensus 604 ~~~~~l~g~~~g~~g~~~~~~l--~~~~~~~~~~Vl~lDEid~l~~~~~~~Ll~~le~ 659 (848)
.++..+++..+...+ ....+ ..........+|++||+..+++..+..|+..+..
T Consensus 99 ~T~h~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~iiiDE~~~~~~~~~~~l~~~~~~ 154 (459)
T 3upu_A 99 STIHSILKINPVTYE--ENVLFEQKEVPDLAKCRVLICDEVSMYDRKLFKILLSTIPP 154 (459)
T ss_dssp EEHHHHHTEEEEECS--SCEEEEECSCCCCSSCSEEEESCGGGCCHHHHHHHHHHSCT
T ss_pred hhHHHHhccCccccc--ccchhcccccccccCCCEEEEECchhCCHHHHHHHHHhccC
Confidence 111112221000000 00000 0000112357999999999999999999999863
No 215
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.28 E-value=7.6e-05 Score=73.34 Aligned_cols=24 Identities=17% Similarity=0.070 Sum_probs=19.6
Q ss_pred CcEEECCCCCcHHHHHHHHHHHhh
Q 003094 220 NPCLIGEPGVGKTAIAEGLAQRIA 243 (848)
Q Consensus 220 ~iLL~GppGtGKT~la~~la~~l~ 243 (848)
-.+++||+|+||||++..++..+.
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~ 28 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYK 28 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 357899999999999977776654
No 216
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.26 E-value=0.00053 Score=68.90 Aligned_cols=38 Identities=29% Similarity=0.228 Sum_probs=28.6
Q ss_pred CCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCc
Q 003094 216 RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGL 263 (848)
Q Consensus 216 ~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~ 263 (848)
+...-++|+||||+|||+++..++. . . +..+++++...
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~-~-~--------~~~v~~i~~~~ 55 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGL-L-S--------GKKVAYVDTEG 55 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHH-H-H--------CSEEEEEESSC
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH-H-c--------CCcEEEEECCC
Confidence 3444568999999999999999998 2 1 45677777543
No 217
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.23 E-value=0.00061 Score=69.05 Aligned_cols=112 Identities=21% Similarity=0.158 Sum_probs=62.7
Q ss_pred CCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccc---------cc------------------
Q 003094 216 RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVA---------GT------------------ 268 (848)
Q Consensus 216 ~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~---------~~------------------ 268 (848)
+....++|+||+|+|||++++.++..+... +..+++++...... +.
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (235)
T 2w0m_A 21 PQGFFIALTGEPGTGKTIFSLHFIAKGLRD-------GDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEKKLIIIDALMK 93 (235)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHHHHHHH-------TCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTTTEEEEECCC-
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHHHHC-------CCeEEEEEcccCHHHHHHHHHHhcchHHHHhhCCEEEEecccc
Confidence 344567899999999999999999765421 22344443221000 00
Q ss_pred ----cc---cchHHHHHHHHHHHHHhCCCe--EEEEcccchhhhCCCCCchHHHHHHHhhhhcCCceEEEEeeChH
Q 003094 269 ----KY---RGEFEERLKKLMEEIKQSDEI--ILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATTLD 335 (848)
Q Consensus 269 ----~~---~g~~~~~l~~l~~~~~~~~~~--IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~atn~~ 335 (848)
.+ ..........+...+...+|- +|+|||...+... +......+.+.|+.+....++.+|.++...
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~-d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 94 EKEDQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLD-KPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp ---CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSS-CGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred ccCceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcC-CHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 00 002223333344444445677 9999999987532 122234566777776655566777766544
No 218
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.21 E-value=0.0049 Score=71.45 Aligned_cols=134 Identities=16% Similarity=0.196 Sum_probs=70.9
Q ss_pred HHHHHHHHHHH-HHHHHhCCCCcCHHHHHHHHhhCCCchHHHHHHHcCCChHHHHHHHHHHhccccccccC-C-C-CC-C
Q 003094 97 EKAIKVIMLAQ-EEARRLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRTQVIRMVGESTEAVGA-G-V-GG-G 171 (848)
Q Consensus 97 ~~a~~~l~~A~-~~A~~~~~~~i~~eHlLlall~~~~~~a~~iL~~~gv~~~~l~~~~~~~~~~~~~~~~~-~-~-~~-~ 171 (848)
.+.+-++..+. .+|...||.++..+.|+-...+ + ++++.+.+...+..++....-.... . . +. .
T Consensus 72 ~R~~a~~~~~l~~~~~~~Ght~~~~~~l~~~~~~--------~---l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (574)
T 3e1s_A 72 RRLTAAAVYALQLAGTQAGHSFLPRSRAEKGVVH--------Y---TRVTPGQARLAVETAVELGRLSEDDSPLFAAEAA 140 (574)
T ss_dssp HHHHHHHHHHHHHHHHHTCCSCEEHHHHHHHHHH--------H---HCCCHHHHHHHHHHHHHHTSSEEECCCCSCC---
T ss_pred HHHHHHHHHHHHHHHHHCCCEeecHHHHHHHHHH--------H---hCCCHHHHHHHHHHHHhCCCEEEEeccccccccc
Confidence 45566666776 6778899999999977755432 2 3678887777777655432111100 0 0 00 0
Q ss_pred CCCCCccchHHh---hhh----hhhhhhc--------CC---CCCc--cCChHHHHHHHHHhccCCCCCcEEECCCCCcH
Q 003094 172 SSGNKMPTLEEY---GTN----LTKLAEE--------GK---LDPV--VGRQPQIERVVQILGRRTKNNPCLIGEPGVGK 231 (848)
Q Consensus 172 ~~~~~~~~l~~~---~~~----l~~~~~~--------~~---ld~i--iG~~~~~~~l~~~l~~~~~~~iLL~GppGtGK 231 (848)
......=.+..| -.. +...... .. ++.+ .-.+.+.+.+...+. ...++|.|||||||
T Consensus 141 ~~~~~~~yl~~~~~~E~~ia~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~Q~~Av~~~~~---~~~~~I~G~pGTGK 217 (574)
T 3e1s_A 141 ATGEGRIYLPHVLRAEKKLASLIRTLLATPPADGAGNDDWAVPKKARKGLSEEQASVLDQLAG---HRLVVLTGGPGTGK 217 (574)
T ss_dssp CCSCCEEECHHHHHHHHHHHHHHHHHHHSCCCC-CCCCCCCCCTTTTTTCCHHHHHHHHHHTT---CSEEEEECCTTSCH
T ss_pred cCCCcEEEcHHHHHHHHHHHHHHHHHhccCCccCCChhhHHHHHhhcCCCCHHHHHHHHHHHh---CCEEEEEcCCCCCH
Confidence 000011111111 111 1111110 01 1211 112345555555443 46788999999999
Q ss_pred HHHHHHHHHHhhC
Q 003094 232 TAIAEGLAQRIAS 244 (848)
Q Consensus 232 T~la~~la~~l~~ 244 (848)
|+++..++..+..
T Consensus 218 Tt~i~~l~~~l~~ 230 (574)
T 3e1s_A 218 STTTKAVADLAES 230 (574)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988764
No 219
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.07 E-value=0.0019 Score=65.87 Aligned_cols=88 Identities=19% Similarity=0.117 Sum_probs=50.1
Q ss_pred CCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccc-----------ccc--------------c
Q 003094 216 RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVA-----------GTK--------------Y 270 (848)
Q Consensus 216 ~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~-----------~~~--------------~ 270 (848)
+...-++|+||||+|||+++..++........ ....+..+++++...... +.. .
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~-~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 100 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAVTCQLPID-RGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFN 100 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHTTSCGG-GTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHHHHhCchh-cCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecCC
Confidence 34455789999999999999999986421100 000134577776544100 000 0
Q ss_pred cchHHHHHHHHHHHHHhCCCeEEEEcccchhhhC
Q 003094 271 RGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGA 304 (848)
Q Consensus 271 ~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~ 304 (848)
..+....+..+.+.+....+.+|+|||+..+...
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~ 134 (243)
T 1n0w_A 101 TDHQTQLLYQASAMMVESRYALLIVDSATALYRT 134 (243)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHH
Confidence 0111122333444455567889999999988743
No 220
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.03 E-value=0.0012 Score=66.52 Aligned_cols=100 Identities=16% Similarity=0.108 Sum_probs=55.3
Q ss_pred cEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCc-------ccc--cccccchHHHHHHHHHHHHHh----
Q 003094 221 PCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGL-------LVA--GTKYRGEFEERLKKLMEEIKQ---- 287 (848)
Q Consensus 221 iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~-------l~~--~~~~~g~~~~~l~~l~~~~~~---- 287 (848)
++++||+|+||||++..++.++... +.+++.+.... +.. |.............+++.+..
T Consensus 15 ~litG~mGsGKTT~ll~~~~r~~~~-------g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~ 87 (223)
T 2b8t_A 15 EFITGPMFAGKTAELIRRLHRLEYA-------DVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFN 87 (223)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHT-------TCCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSC
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhc-------CCEEEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHHHHHHhhC
Confidence 4678999999999999999887642 33444442111 100 000000000011234444443
Q ss_pred CCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCCceEEEEeeChHH
Q 003094 288 SDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATTLDE 336 (848)
Q Consensus 288 ~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~atn~~~ 336 (848)
..+-+|+|||+..+. .+..+.+..+... ++.||.++-..+
T Consensus 88 ~~~dvViIDEaQ~l~--------~~~ve~l~~L~~~-gi~Vil~Gl~~d 127 (223)
T 2b8t_A 88 DETKVIGIDEVQFFD--------DRICEVANILAEN-GFVVIISGLDKN 127 (223)
T ss_dssp TTCCEEEECSGGGSC--------THHHHHHHHHHHT-TCEEEEECCSBC
T ss_pred CCCCEEEEecCccCc--------HHHHHHHHHHHhC-CCeEEEEecccc
Confidence 335699999999863 2355555554443 677887776444
No 221
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.96 E-value=0.0011 Score=65.25 Aligned_cols=95 Identities=16% Similarity=0.193 Sum_probs=51.7
Q ss_pred EEEeecCCcchHHHHHHHHHHHhcCCCCceEEeccc--c-cccccchhcccCCCCCCcccccccchhHHHHcCCCeEEEE
Q 003094 563 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMS--E-FMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLF 639 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~--~-~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~Vl~l 639 (848)
-.+++||.|+|||+.+..++..+...+.....+... . +......++ +|.............+.+.+. .+..+|+|
T Consensus 10 i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s~-~g~~~~a~~~~~~~~i~~~~~-~~~dvViI 87 (191)
T 1xx6_A 10 VEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSH-MGEKEQAVAIKNSREILKYFE-EDTEVIAI 87 (191)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEECT-TSCEEECEEESSSTHHHHHCC-TTCSEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHhh-cCCceeeEeeCCHHHHHHHHh-ccCCEEEE
Confidence 467899999999988877776654445554444311 1 111111111 121100011111122333322 24679999
Q ss_pred cCCCcCChHHHHHHHhhhcC
Q 003094 640 DEIEKAHPDVFNMMLQILED 659 (848)
Q Consensus 640 DEid~l~~~~~~~Ll~~le~ 659 (848)
||++.++++.++.+..+.+.
T Consensus 88 DEaqfl~~~~v~~l~~l~~~ 107 (191)
T 1xx6_A 88 DEVQFFDDEIVEIVNKIAES 107 (191)
T ss_dssp CSGGGSCTHHHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHHHHhC
Confidence 99999998888877666554
No 222
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=96.95 E-value=0.00063 Score=65.57 Aligned_cols=65 Identities=12% Similarity=0.219 Sum_probs=49.4
Q ss_pred HhhHHHHHHHHHHHHHHH-HhCCCCcCHHHHHHHHhhCCCch-HHHHHH-HcCCChHHHHHHHHHHhc
Q 003094 94 RFTEKAIKVIMLAQEEAR-RLGHNYIGSEHLLLGLLREGEGV-AARVLE-NLGADPSNIRTQVIRMVG 158 (848)
Q Consensus 94 ~~t~~a~~~l~~A~~~A~-~~~~~~i~~eHlLlall~~~~~~-a~~iL~-~~gv~~~~l~~~~~~~~~ 158 (848)
.||+.++++++.|..+|+ ++|++||++||||+||++++... ...+-. -..++.+.++..+.....
T Consensus 98 ~~S~~l~~vL~~A~~~A~l~~gd~~I~teHLLLALl~~~~~~~~~~~~~~l~~i~~~~L~~~~~~~~~ 165 (171)
T 3zri_A 98 AFSPLLVELLQEAWLLSSTELEQAELRSGAIFLAALTRADRYLSFKLISLFEGINRENLKKHFAMILS 165 (171)
T ss_dssp EECHHHHHHHHHHHHHHHTTTCCSSBCHHHHHHHHHHTHHHHSCHHHHHHTTTSCHHHHHHTHHHHTT
T ss_pred CcCHHHHHHHHHHHHHHHHHcCCCEEcHHHHHHHHHhChhhhHHHHhhHHHHcCCHHHHHHHHHHHHh
Confidence 479999999999999999 99999999999999999886211 112222 246777887776654443
No 223
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=96.94 E-value=0.0033 Score=76.08 Aligned_cols=43 Identities=28% Similarity=0.234 Sum_probs=36.0
Q ss_pred ccCChHHHHHHHHHhcc-CCCCCcEEECCCCCcHHHHHHHHHHH
Q 003094 199 VVGRQPQIERVVQILGR-RTKNNPCLIGEPGVGKTAIAEGLAQR 241 (848)
Q Consensus 199 iiG~~~~~~~l~~~l~~-~~~~~iLL~GppGtGKT~la~~la~~ 241 (848)
.+||+.++++|.+.|.. ...+-+.|+|++|+|||++|+.+++.
T Consensus 130 ~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHh
Confidence 49999999999998875 33445679999999999999999863
No 224
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.88 E-value=0.0011 Score=71.87 Aligned_cols=97 Identities=21% Similarity=0.294 Sum_probs=52.3
Q ss_pred eEEEeecCCcchHHHHHHHHHHHhcCC-CCceEEe-cccccccccchhcccCCCCCCcccccccchhHHHHcCCCeEEEE
Q 003094 562 ASFIFSGPTGVGKSELAKALAAYYFGS-EEAMIRL-DMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLF 639 (848)
Q Consensus 562 ~~lLl~Gp~GtGKT~lA~~la~~l~~~-~~~~i~i-~~~~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~Vl~l 639 (848)
+.+++.||+|+||||+.++++..+... +..++.+ |-.++........+.....+....+-...+..+++ ..+.+|++
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~-~~Pdvill 202 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALR-EDPDIILV 202 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTT-SCCSEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhh-hCcCEEec
Confidence 468999999999999999999887322 2333322 11111111000000000000000000112334444 34579999
Q ss_pred cCCCcCChHHHHHHHhhhcCcE
Q 003094 640 DEIEKAHPDVFNMMLQILEDGR 661 (848)
Q Consensus 640 DEid~l~~~~~~~Ll~~le~g~ 661 (848)
||+- +++....++++.+.|.
T Consensus 203 DEp~--d~e~~~~~~~~~~~G~ 222 (356)
T 3jvv_A 203 GEMR--DLETIRLALTAAETGH 222 (356)
T ss_dssp SCCC--SHHHHHHHHHHHHTTC
T ss_pred CCCC--CHHHHHHHHHHHhcCC
Confidence 9997 6778888888877654
No 225
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.78 E-value=0.0043 Score=67.53 Aligned_cols=81 Identities=15% Similarity=0.154 Sum_probs=49.8
Q ss_pred CCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCccccc-------cc-------ccchHHHHHHHH
Q 003094 216 RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAG-------TK-------YRGEFEERLKKL 281 (848)
Q Consensus 216 ~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~-------~~-------~~g~~~~~l~~l 281 (848)
+...-++|+||||+|||+++..++..+... +.++++++....... .. .....+..+..+
T Consensus 72 ~~G~li~I~G~pGsGKTtlal~la~~~~~~-------g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l 144 (366)
T 1xp8_A 72 PRGRITEIYGPESGGKTTLALAIVAQAQKA-------GGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIM 144 (366)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHT-------TCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred cCCcEEEEEcCCCCChHHHHHHHHHHHHHC-------CCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHH
Confidence 344557899999999999999998876532 456778876532110 00 001122222222
Q ss_pred HHHHHhCCCeEEEEcccchhhh
Q 003094 282 MEEIKQSDEIILFIDEVHTLIG 303 (848)
Q Consensus 282 ~~~~~~~~~~IL~IDEid~l~~ 303 (848)
...++...+.+||||.+..+.+
T Consensus 145 ~~l~~~~~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 145 ELLVRSGAIDVVVVDSVAALTP 166 (366)
T ss_dssp HHHHTTTCCSEEEEECTTTCCC
T ss_pred HHHHhcCCCCEEEEeChHHhcc
Confidence 2222345577999999999974
No 226
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.77 E-value=0.0032 Score=64.30 Aligned_cols=28 Identities=29% Similarity=0.349 Sum_probs=22.5
Q ss_pred CCCCCcEEECCCCCcHHHHHHHHHHHhh
Q 003094 216 RTKNNPCLIGEPGVGKTAIAEGLAQRIA 243 (848)
Q Consensus 216 ~~~~~iLL~GppGtGKT~la~~la~~l~ 243 (848)
+....++|+||||+|||+++..++..+.
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~~~ 48 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWNGL 48 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3455678999999999999988876654
No 227
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.75 E-value=0.0066 Score=60.84 Aligned_cols=39 Identities=26% Similarity=0.210 Sum_probs=30.5
Q ss_pred CCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCC
Q 003094 217 TKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMG 262 (848)
Q Consensus 217 ~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~ 262 (848)
.+-++++.|+||||||+++-.+|..+... |.+++.++..
T Consensus 5 g~l~I~~~~kgGvGKTt~a~~la~~l~~~-------G~~V~v~d~D 43 (228)
T 2r8r_A 5 GRLKVFLGAAPGVGKTYAMLQAAHAQLRQ-------GVRVMAGVVE 43 (228)
T ss_dssp CCEEEEEESSTTSSHHHHHHHHHHHHHHT-------TCCEEEEECC
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHC-------CCCEEEEEeC
Confidence 45578999999999999999999988653 5566666653
No 228
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=96.73 E-value=0.0054 Score=70.96 Aligned_cols=44 Identities=16% Similarity=0.194 Sum_probs=34.8
Q ss_pred cChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHH
Q 003094 534 IGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAA 583 (848)
Q Consensus 534 igq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~ 583 (848)
+|.+..++.|.+.+.... ......+.++|+.|+|||+||+.+++
T Consensus 131 ~GR~~~~~~l~~~L~~~~------~~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC------DLDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT------TSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhccc------CCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 599999999988885431 11234588999999999999999996
No 229
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.69 E-value=0.0018 Score=74.98 Aligned_cols=90 Identities=21% Similarity=0.327 Sum_probs=53.9
Q ss_pred EEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccc-----c-----ccccchhcccCCCCCCcccccccchhHHHHcC
Q 003094 563 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSE-----F-----MERHTVSKLIGSPPGYVGYTEGGQLTEAVRRR 632 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~-----~-----~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~ 632 (848)
.+++.||||||||+++..++..+...+.++..+-... + ....++..+++..+. ++... .-...
T Consensus 206 ~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~~--~~~~~-----~~~~~ 278 (574)
T 3e1s_A 206 LVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGPQ--GFRHN-----HLEPA 278 (574)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEETT--EESCS-----SSSCC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCcc--hhhhh-----hcccc
Confidence 4889999999999999999987754444444321110 0 011122233322110 10000 00112
Q ss_pred CCeEEEEcCCCcCChHHHHHHHhhhcC
Q 003094 633 PYTVVLFDEIEKAHPDVFNMMLQILED 659 (848)
Q Consensus 633 ~~~Vl~lDEid~l~~~~~~~Ll~~le~ 659 (848)
+..+|++||+..++...+..|++.+..
T Consensus 279 ~~dvlIIDEasml~~~~~~~Ll~~~~~ 305 (574)
T 3e1s_A 279 PYDLLIVDEVSMMGDALMLSLLAAVPP 305 (574)
T ss_dssp SCSEEEECCGGGCCHHHHHHHHTTSCT
T ss_pred cCCEEEEcCccCCCHHHHHHHHHhCcC
Confidence 457999999999999999999988764
No 230
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.65 E-value=0.0046 Score=63.25 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=21.5
Q ss_pred CCCCCcEEECCCCCcHHHHHHHHHH
Q 003094 216 RTKNNPCLIGEPGVGKTAIAEGLAQ 240 (848)
Q Consensus 216 ~~~~~iLL~GppGtGKT~la~~la~ 240 (848)
+...-+.|+||+|+||||+++.++.
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 4556678999999999999999984
No 231
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.60 E-value=0.005 Score=61.21 Aligned_cols=95 Identities=16% Similarity=0.126 Sum_probs=50.0
Q ss_pred EEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccc---cccccchhcccCCCCCCcccccccchhHHHHcCCCeEEEE
Q 003094 563 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSE---FMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLF 639 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~---~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~Vl~l 639 (848)
-.+++||.|+|||+.+-.++.-+...+...+.+.... +.+....+++ |......+......+.+.+. .+..+|+|
T Consensus 30 l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d~R~ge~~i~s~~-g~~~~a~~~~~~~~~~~~~~-~~~dvViI 107 (214)
T 2j9r_A 30 IEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDNRYSEEDVVSHN-GLKVKAVPVSASKDIFKHIT-EEMDVIAI 107 (214)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC------------------CCEEECSSGGGGGGGCC-SSCCEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCCcchHHHHHhhc-CCeeEEeecCCHHHHHHHHh-cCCCEEEE
Confidence 3568999999999888777766544555555443221 1111112222 32211111111122332222 24679999
Q ss_pred cCCCcCChHHHHHHHhhhcC
Q 003094 640 DEIEKAHPDVFNMMLQILED 659 (848)
Q Consensus 640 DEid~l~~~~~~~Ll~~le~ 659 (848)
||++-++++.++.|..+.+.
T Consensus 108 DEaQF~~~~~V~~l~~l~~~ 127 (214)
T 2j9r_A 108 DEVQFFDGDIVEVVQVLANR 127 (214)
T ss_dssp CCGGGSCTTHHHHHHHHHHT
T ss_pred ECcccCCHHHHHHHHHHhhC
Confidence 99999998888776665544
No 232
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.57 E-value=0.0061 Score=61.45 Aligned_cols=27 Identities=37% Similarity=0.439 Sum_probs=22.3
Q ss_pred CCCCcEEECCCCCcHHHHHHHHHHHhh
Q 003094 217 TKNNPCLIGEPGVGKTAIAEGLAQRIA 243 (848)
Q Consensus 217 ~~~~iLL~GppGtGKT~la~~la~~l~ 243 (848)
...-+.|+||+|+||||+++.++..+.
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 344578999999999999999998653
No 233
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.54 E-value=0.0089 Score=64.59 Aligned_cols=88 Identities=16% Similarity=0.135 Sum_probs=52.9
Q ss_pred HHHHhc-c--CCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCccccc-------c-------ccc
Q 003094 209 VVQILG-R--RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAG-------T-------KYR 271 (848)
Q Consensus 209 l~~~l~-~--~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~-------~-------~~~ 271 (848)
|-.+|. . +...-++|+||||+|||+++..++..+... +..+++++....... . ...
T Consensus 49 LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~-------gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~ 121 (356)
T 3hr8_A 49 IDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKM-------GGVAAFIDAEHALDPVYAKNLGVDLKSLLISQP 121 (356)
T ss_dssp HHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHT-------TCCEEEEESSCCCCHHHHHHHTCCGGGCEEECC
T ss_pred HHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhc-------CCeEEEEecccccchHHHHHcCCchhhhhhhhc
Confidence 344455 2 334457899999999999999999887532 445777776542110 0 001
Q ss_pred chHHHHHHHHHHHHHhCCCeEEEEcccchhhh
Q 003094 272 GEFEERLKKLMEEIKQSDEIILFIDEVHTLIG 303 (848)
Q Consensus 272 g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~ 303 (848)
...+..+..+...++...+.+++||.+..+++
T Consensus 122 ~~~e~~l~~~~~l~~~~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 122 DHGEQALEIVDELVRSGVVDLIVVDSVAALVP 153 (356)
T ss_dssp SSHHHHHHHHHHHHHTSCCSEEEEECTTTCCC
T ss_pred cCHHHHHHHHHHHhhhcCCCeEEehHhhhhcC
Confidence 12233333333333445677999999988874
No 234
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.53 E-value=0.0032 Score=61.56 Aligned_cols=25 Identities=20% Similarity=0.348 Sum_probs=22.1
Q ss_pred CCcEEECCCCCcHHHHHHHHHHHhh
Q 003094 219 NNPCLIGEPGVGKTAIAEGLAQRIA 243 (848)
Q Consensus 219 ~~iLL~GppGtGKT~la~~la~~l~ 243 (848)
+.|+|+||+|+||||+++.|.....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 4589999999999999999988763
No 235
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.53 E-value=0.0032 Score=68.24 Aligned_cols=80 Identities=19% Similarity=0.167 Sum_probs=49.1
Q ss_pred CCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccc-------cccc-------cchHHHHHHHH
Q 003094 216 RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVA-------GTKY-------RGEFEERLKKL 281 (848)
Q Consensus 216 ~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~-------~~~~-------~g~~~~~l~~l 281 (848)
+...-++|+||||+|||+++..++..+... +..+++++...... |... ....+..+..+
T Consensus 59 ~~G~iv~I~G~pGsGKTtLal~la~~~~~~-------g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~ 131 (349)
T 2zr9_A 59 PRGRVIEIYGPESSGKTTVALHAVANAQAA-------GGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIA 131 (349)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHT-------TCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhC-------CCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 344557899999999999999999776532 45577777653211 0000 00122222222
Q ss_pred HHHHHhCCCeEEEEcccchhh
Q 003094 282 MEEIKQSDEIILFIDEVHTLI 302 (848)
Q Consensus 282 ~~~~~~~~~~IL~IDEid~l~ 302 (848)
...+....+.+|+||++..+.
T Consensus 132 ~~l~~~~~~~lIVIDsl~~l~ 152 (349)
T 2zr9_A 132 DMLVRSGALDIIVIDSVAALV 152 (349)
T ss_dssp HHHHTTTCCSEEEEECGGGCC
T ss_pred HHHHhcCCCCEEEEcChHhhc
Confidence 223334567899999999987
No 236
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=96.52 E-value=0.01 Score=69.23 Aligned_cols=46 Identities=22% Similarity=0.265 Sum_probs=35.2
Q ss_pred ccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHH
Q 003094 531 KRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAA 583 (848)
Q Consensus 531 ~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~ 583 (848)
..++|.+..++.|...+... ......++++||+|+|||++|..+++
T Consensus 124 ~~~vGR~~~l~~L~~~L~~~-------~~~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 124 VVFVTRKKLVNAIQQKLSKL-------KGEPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp SSCCCCHHHHHHHHHHHTTS-------TTSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred CeecccHHHHHHHHHHHhcc-------cCCCceEEEEcCCCCCHHHHHHHHHh
Confidence 46899999988888877531 11124588999999999999998863
No 237
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.52 E-value=0.0043 Score=60.64 Aligned_cols=92 Identities=14% Similarity=0.164 Sum_probs=51.2
Q ss_pred EEEeecCCcchHH-HHHHHHHHHhcCCCCceEEeccc---ccccccchhcccCCCCCCcccccccchhHHHHcCCCeEEE
Q 003094 563 SFIFSGPTGVGKS-ELAKALAAYYFGSEEAMIRLDMS---EFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVL 638 (848)
Q Consensus 563 ~lLl~Gp~GtGKT-~lA~~la~~l~~~~~~~i~i~~~---~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~Vl~ 638 (848)
-++++||.|+||| .|.+++.++... +...+.+... .+. ...++.+ |.............+.+..+. ..||+
T Consensus 22 l~fiyG~MgsGKTt~Ll~~i~n~~~~-~~kvl~~kp~~D~R~~-~~i~S~~-g~~~~A~~~~~~~d~~~~~~~--~DvIl 96 (195)
T 1w4r_A 22 IQVILGPMFSGKSTELMRRVRRFQIA-QYKCLVIKYAKDTRYS-SSFCTHD-RNTMEALPACLLRDVAQEALG--VAVIG 96 (195)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHT-TCCEEEEEETTCCCGG-GSCCHHH-HHHSEEEEESSGGGGHHHHHT--CSEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHc-CCeEEEEccccCccch-hhhhhcc-CCcccceecCCHHHHHHhccC--CCEEE
Confidence 3668999999999 999999988754 3444444321 121 1112221 110000001122334444333 46999
Q ss_pred EcCCCcCChHHHHHHHhhhcCc
Q 003094 639 FDEIEKAHPDVFNMMLQILEDG 660 (848)
Q Consensus 639 lDEid~l~~~~~~~Ll~~le~g 660 (848)
|||++-+ ++..+.+..+.+.|
T Consensus 97 IDEaQFf-k~~ve~~~~L~~~g 117 (195)
T 1w4r_A 97 IDEGQFF-PDIVEFCEAMANAG 117 (195)
T ss_dssp ESSGGGC-TTHHHHHHHHHHTT
T ss_pred EEchhhh-HHHHHHHHHHHHCC
Confidence 9999999 77666665555543
No 238
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.51 E-value=0.0075 Score=66.39 Aligned_cols=115 Identities=18% Similarity=0.163 Sum_probs=61.9
Q ss_pred CCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCC--CCceEEEEeCCcccccc------------------------c
Q 003094 216 RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTI--EGKKVITLDMGLLVAGT------------------------K 269 (848)
Q Consensus 216 ~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l--~~~~v~~~~~~~l~~~~------------------------~ 269 (848)
....-++|+||||+|||+++..++-.... |... .+..+++++........ .
T Consensus 176 ~~Gei~~I~G~sGsGKTTLl~~la~~~~~---p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~ 252 (400)
T 3lda_A 176 ETGSITELFGEFRTGKSQLCHTLAVTCQI---PLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARA 252 (400)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTS---CGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEEC
T ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhcc---CcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEecc
Confidence 44555789999999999999988754321 1100 13567777765421100 0
Q ss_pred ccc-hHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCCC-c---h-----HHHHHHHhhhhcCCceEEEEeeC
Q 003094 270 YRG-EFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAE-G---A-----IDAANILKPSLARGELQCIGATT 333 (848)
Q Consensus 270 ~~g-~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~~-~---~-----~~~~~~L~~~l~~~~v~vI~atn 333 (848)
+.. .....+..+...+....+.+|+||++-.++...... + . ..+...|+.+....++.+|.++.
T Consensus 253 ~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~H 326 (400)
T 3lda_A 253 YNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQ 326 (400)
T ss_dssp CSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEE
T ss_pred CChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEe
Confidence 000 111223333444445678899999999887532211 1 1 23445555555554566666554
No 239
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.51 E-value=0.0011 Score=64.67 Aligned_cols=25 Identities=40% Similarity=0.488 Sum_probs=23.4
Q ss_pred CCCcEEECCCCCcHHHHHHHHHHHh
Q 003094 218 KNNPCLIGEPGVGKTAIAEGLAQRI 242 (848)
Q Consensus 218 ~~~iLL~GppGtGKT~la~~la~~l 242 (848)
+.+++|+||||+||||+++.|++.+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 5678999999999999999999998
No 240
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.50 E-value=0.019 Score=62.17 Aligned_cols=28 Identities=36% Similarity=0.402 Sum_probs=23.4
Q ss_pred cCCCCCcEEECCCCCcHHHHHHHHHHHh
Q 003094 215 RRTKNNPCLIGEPGVGKTAIAEGLAQRI 242 (848)
Q Consensus 215 ~~~~~~iLL~GppGtGKT~la~~la~~l 242 (848)
.+...-+.|+||||+|||++++.++..+
T Consensus 128 i~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 128 IETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444557899999999999999999876
No 241
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.49 E-value=0.0051 Score=66.02 Aligned_cols=87 Identities=17% Similarity=0.193 Sum_probs=51.7
Q ss_pred CCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccc-----------cccc-----------cch
Q 003094 216 RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVA-----------GTKY-----------RGE 273 (848)
Q Consensus 216 ~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~-----------~~~~-----------~g~ 273 (848)
+...-++|+||||+|||+++..++........ ....+..+++++...... +... ...
T Consensus 105 ~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~-~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~~ 183 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPE-KGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAIN 183 (324)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGG-GTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCCcEEEEECCCCCCHhHHHHHHHHHHhcccc-cCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCCC
Confidence 44556789999999999999999987532100 000135678887654210 0000 001
Q ss_pred HH---HHHHHHHHHHHh-CCCeEEEEcccchhhh
Q 003094 274 FE---ERLKKLMEEIKQ-SDEIILFIDEVHTLIG 303 (848)
Q Consensus 274 ~~---~~l~~l~~~~~~-~~~~IL~IDEid~l~~ 303 (848)
.+ ..+..+...+++ .++.+|+||.+..+..
T Consensus 184 ~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~ 217 (324)
T 2z43_A 184 TDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFR 217 (324)
T ss_dssp HHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhh
Confidence 11 223344444555 6678999999999874
No 242
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.48 E-value=0.0053 Score=66.56 Aligned_cols=81 Identities=14% Similarity=0.174 Sum_probs=49.9
Q ss_pred CCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccccc-------c------ccchHHHHHHHHH
Q 003094 216 RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGT-------K------YRGEFEERLKKLM 282 (848)
Q Consensus 216 ~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~-------~------~~g~~~~~l~~l~ 282 (848)
+....++|+||||+|||+++..++..+... +..+++++........ . ........+..++
T Consensus 61 ~~G~ii~I~G~pGsGKTtLal~la~~~~~~-------g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~ 133 (356)
T 1u94_A 61 PMGRIVEIYGPESSGKTTLTLQVIAAAQRE-------GKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEIC 133 (356)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHHHT-------TCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHC-------CCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHH
Confidence 445567899999999999999999876532 4567788764321100 0 0000112223333
Q ss_pred HHH-HhCCCeEEEEcccchhhh
Q 003094 283 EEI-KQSDEIILFIDEVHTLIG 303 (848)
Q Consensus 283 ~~~-~~~~~~IL~IDEid~l~~ 303 (848)
..+ +...+.+|+||.+..+..
T Consensus 134 ~~l~~~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 134 DALARSGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HHHHHHTCCSEEEEECGGGCCC
T ss_pred HHHHhccCCCEEEEcCHHHhcc
Confidence 332 345677999999999873
No 243
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.45 E-value=0.016 Score=59.49 Aligned_cols=25 Identities=24% Similarity=0.490 Sum_probs=21.1
Q ss_pred CCCCcEEECCCCCcHHHHHHHHHHH
Q 003094 217 TKNNPCLIGEPGVGKTAIAEGLAQR 241 (848)
Q Consensus 217 ~~~~iLL~GppGtGKT~la~~la~~ 241 (848)
...+|+|+|.||+|||++++.|...
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTS
T ss_pred CceEEEEECCCCCcHHHHHHHHhCC
Confidence 3457899999999999999998753
No 244
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.44 E-value=0.015 Score=62.95 Aligned_cols=95 Identities=19% Similarity=0.180 Sum_probs=54.2
Q ss_pred HHHHhc--cCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCccccc-----------cc------
Q 003094 209 VVQILG--RRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAG-----------TK------ 269 (848)
Q Consensus 209 l~~~l~--~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~-----------~~------ 269 (848)
|-.+|. .+...-++|+||||+|||+++..++........ ..-.+..+++++....... ..
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~-~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~ 189 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGA-GGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLD 189 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBT-TTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccc-cCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHh
Confidence 344453 234445689999999999999999987432100 0002457888876542110 00
Q ss_pred --------ccchHHHHHHHHHHHHHh--CCCeEEEEcccchhhhC
Q 003094 270 --------YRGEFEERLKKLMEEIKQ--SDEIILFIDEVHTLIGA 304 (848)
Q Consensus 270 --------~~g~~~~~l~~l~~~~~~--~~~~IL~IDEid~l~~~ 304 (848)
...+....+..+...+.. .++.+|+||.+..+...
T Consensus 190 ~l~~~~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~ 234 (343)
T 1v5w_A 190 NVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRV 234 (343)
T ss_dssp TEEEEECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHH
T ss_pred ceeEeecCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHH
Confidence 011111222333344455 56789999999998753
No 245
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.43 E-value=0.025 Score=64.57 Aligned_cols=141 Identities=18% Similarity=0.226 Sum_probs=85.8
Q ss_pred CCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcc--c--cc-----ccccc--------------hH
Q 003094 218 KNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLL--V--AG-----TKYRG--------------EF 274 (848)
Q Consensus 218 ~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l--~--~~-----~~~~g--------------~~ 274 (848)
..|+|+.|.+|+|||++++.+...+.....|+ ..+++-+|.... . .+ ..... +.
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~---ev~lilIDpKg~eLs~~~~lPHl~~~Vvtd~~~a~~~L~~lv~EM 290 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILFKSTPS---EARLIMIDPKMLELSIYEGIPHLLCPVVTDMKEAANALRWSVAEM 290 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHTTCCTT---TEEEEEECSSSHHHHTTTTCTTBSSSCBCCHHHHHHHHHHHHHHH
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHHhCCCc---ceEEEEeCCChhhhHhhcCCCcccceeeCCHHHHHHHHHHHHHHH
Confidence 58999999999999999999888776443332 456777876531 0 00 00011 11
Q ss_pred HHHHHHHHHHH------------H---------------------------hCCCeEEEEcccchhhhCCCCCchHHHHH
Q 003094 275 EERLKKLMEEI------------K---------------------------QSDEIILFIDEVHTLIGAGAAEGAIDAAN 315 (848)
Q Consensus 275 ~~~l~~l~~~~------------~---------------------------~~~~~IL~IDEid~l~~~~~~~~~~~~~~ 315 (848)
+.+.. ++... . .-.+.+|+|||++.++... ..++..
T Consensus 291 erR~~-ll~~~gvrni~~Yn~~~~~~~~~G~~~~dp~~~~~~~~~~~~~~~~lP~ivvVIDE~~~L~~~~----~~~~~~ 365 (574)
T 2iut_A 291 ERRYR-LMAAMGVRNLAGFNRKVKDAEEAGTPLTDPLFRRESPDDEPPQLSTLPTIVVVVDEFADMMMIV----GKKVEE 365 (574)
T ss_dssp HHHHH-HHHHHTCSSHHHHHHHHHHHHHTTCCCBCTTCCCCSTTCCCCBCCCCCEEEEEESCCTTHHHHT----CHHHHH
T ss_pred HHHHH-HHHHcCCccHHHHHHHHHHHhhcccccccccccccccccccccccCCCcEEEEEeCHHHHhhhh----hHHHHH
Confidence 11111 11110 0 0113789999999887532 123444
Q ss_pred HHhhhhc---CCceEEEEeeChHHHHhhhhcChhhhcccC-CCcCCCCCHHHHHHHHH
Q 003094 316 ILKPSLA---RGELQCIGATTLDEYRKHIEKDPALERRFQ-PVKVPEPSVDETIQILK 369 (848)
Q Consensus 316 ~L~~~l~---~~~v~vI~atn~~~~~~~~~~d~al~~Rf~-~i~~~~p~~~e~~~Il~ 369 (848)
.|..+.. .-++.+|.+|..+... .++..+++.|. .|.+...+..+...|+.
T Consensus 366 ~L~~Iar~GRa~GIhLIlaTQRPs~d---~I~~~Iran~~~RI~lrv~s~~Dsr~ILd 420 (574)
T 2iut_A 366 LIARIAQKARAAGIHLILATQRPSVD---VITGLIKANIPTRIAFQVSSKIDSRTILD 420 (574)
T ss_dssp HHHHHHHHCTTTTEEEEEEESCCCTT---TSCHHHHHTCCEEEEECCSCHHHHHHHHS
T ss_pred HHHHHHHHHhhCCeEEEEEecCcccc---cccHHHHhhhccEEEEEcCCHHHHHHhcC
Confidence 4544443 4468888888776521 46778888886 78888888887766653
No 246
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.40 E-value=0.024 Score=62.84 Aligned_cols=87 Identities=10% Similarity=0.072 Sum_probs=51.2
Q ss_pred ceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEeccccccccc-----chhcccCCCC--CCcccccccchhH---HHH
Q 003094 561 IASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH-----TVSKLIGSPP--GYVGYTEGGQLTE---AVR 630 (848)
Q Consensus 561 ~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~-----~~~~l~g~~~--g~~g~~~~~~l~~---~~~ 630 (848)
...++|+|++|+||||++..||..+...+.....+++..+.... ......|.+. .+.+.+....+.. .++
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~ 179 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFK 179 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHH
Confidence 45689999999999999999999887666677667766543210 0111112110 0111111111222 333
Q ss_pred cCCCeEEEEcCCCcCCh
Q 003094 631 RRPYTVVLFDEIEKAHP 647 (848)
Q Consensus 631 ~~~~~Vl~lDEid~l~~ 647 (848)
...+.++++|....++.
T Consensus 180 ~~~~DvVIIDTaGrl~~ 196 (443)
T 3dm5_A 180 SKGVDIIIVDTAGRHKE 196 (443)
T ss_dssp HTTCSEEEEECCCCSSC
T ss_pred hCCCCEEEEECCCcccc
Confidence 44578999999987763
No 247
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.37 E-value=0.0056 Score=63.43 Aligned_cols=24 Identities=33% Similarity=0.631 Sum_probs=22.0
Q ss_pred eEEEeecCCcchHHHHHHHHHHHh
Q 003094 562 ASFIFSGPTGVGKSELAKALAAYY 585 (848)
Q Consensus 562 ~~lLl~Gp~GtGKT~lA~~la~~l 585 (848)
..+++.||+|+||||+.++|+..+
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHHhC
Confidence 458899999999999999999886
No 248
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.37 E-value=0.0025 Score=61.68 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=22.6
Q ss_pred CCCcEEECCCCCcHHHHHHHHHHHh
Q 003094 218 KNNPCLIGEPGVGKTAIAEGLAQRI 242 (848)
Q Consensus 218 ~~~iLL~GppGtGKT~la~~la~~l 242 (848)
+..++|+|+||+||||+++.|++.+
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3457899999999999999999998
No 249
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.33 E-value=0.0017 Score=64.29 Aligned_cols=27 Identities=26% Similarity=0.434 Sum_probs=24.0
Q ss_pred CCCCCcEEECCCCCcHHHHHHHHHHHh
Q 003094 216 RTKNNPCLIGEPGVGKTAIAEGLAQRI 242 (848)
Q Consensus 216 ~~~~~iLL~GppGtGKT~la~~la~~l 242 (848)
.+...++|+||||+||||+++.|++.+
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 345689999999999999999999998
No 250
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.31 E-value=0.013 Score=59.80 Aligned_cols=36 Identities=22% Similarity=0.303 Sum_probs=26.1
Q ss_pred HHHHHHHHHhccCCCCCcEEECCCCCcHHHHHHHHHHHh
Q 003094 204 PQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRI 242 (848)
Q Consensus 204 ~~~~~l~~~l~~~~~~~iLL~GppGtGKT~la~~la~~l 242 (848)
.+.+.+..++.. .+++++||+|+|||.++..++..+
T Consensus 97 ~Q~~ai~~~~~~---~~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 97 YQEKALERWLVD---KRGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp HHHHHHHHHTTT---SEEEEEESSSTTHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhC---CCEEEEeCCCCCHHHHHHHHHHHc
Confidence 344444444432 459999999999999998888765
No 251
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.27 E-value=0.018 Score=60.64 Aligned_cols=31 Identities=23% Similarity=0.312 Sum_probs=25.6
Q ss_pred hccCCCCCcEEECCCCCcHHHHHHHHHHHhh
Q 003094 213 LGRRTKNNPCLIGEPGVGKTAIAEGLAQRIA 243 (848)
Q Consensus 213 l~~~~~~~iLL~GppGtGKT~la~~la~~l~ 243 (848)
+..+...-++|+||||+||||+++.++..+.
T Consensus 30 ~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~ 60 (296)
T 1cr0_A 30 LGARGGEVIMVTSGSGMGKSTFVRQQALQWG 60 (296)
T ss_dssp CSBCTTCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cCCCCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 3445556678999999999999999998875
No 252
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.27 E-value=0.019 Score=60.06 Aligned_cols=29 Identities=34% Similarity=0.483 Sum_probs=24.4
Q ss_pred CCCCcEEECCCCCcHHHHHHHHHHHhhCC
Q 003094 217 TKNNPCLIGEPGVGKTAIAEGLAQRIASG 245 (848)
Q Consensus 217 ~~~~iLL~GppGtGKT~la~~la~~l~~~ 245 (848)
...-++|+||+|+||||++..++..+..+
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~~g 57 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQIAGG 57 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHTC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHhcC
Confidence 44567899999999999999999877654
No 253
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.27 E-value=0.0021 Score=62.21 Aligned_cols=35 Identities=20% Similarity=0.435 Sum_probs=28.2
Q ss_pred EEEeecCCcchHHHHHHHHHHHhcCCCCceEEeccccc
Q 003094 563 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEF 600 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~ 600 (848)
.++|.|+||+||||+|+.|++.+ +.+++.++...+
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~l---~~~~~~~~~D~~ 39 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSVL---PEPWLAFGVDSL 39 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHS---SSCEEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc---CCCeEEeccchH
Confidence 48899999999999999999987 456776555443
No 254
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.25 E-value=0.0027 Score=61.87 Aligned_cols=30 Identities=20% Similarity=0.336 Sum_probs=25.4
Q ss_pred EEEeecCCcchHHHHHHHHHHHhcCCCCceEEe
Q 003094 563 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIRL 595 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i 595 (848)
.++|+||+|+|||++|+.||+.+ +.+++..
T Consensus 7 ~i~l~G~~GsGKst~a~~La~~l---~~~~i~~ 36 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVGSQLAKLT---KRILYDS 36 (185)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH---CCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCCEEEC
Confidence 58999999999999999999988 5555543
No 255
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.22 E-value=0.0028 Score=61.54 Aligned_cols=26 Identities=42% Similarity=0.603 Sum_probs=23.8
Q ss_pred CCCCcEEECCCCCcHHHHHHHHHHHh
Q 003094 217 TKNNPCLIGEPGVGKTAIAEGLAQRI 242 (848)
Q Consensus 217 ~~~~iLL~GppGtGKT~la~~la~~l 242 (848)
.+.+++|+|+||+||||+++.|++.+
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999999988
No 256
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.22 E-value=0.0069 Score=63.72 Aligned_cols=36 Identities=28% Similarity=0.521 Sum_probs=27.7
Q ss_pred eEEEeecCCcchHHHHHHHHHHHhcCCCCceEEeccccc
Q 003094 562 ASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEF 600 (848)
Q Consensus 562 ~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~ 600 (848)
..++|.||||+||||+|+.|++.+ +..++.+++..+
T Consensus 34 ~livl~G~sGsGKSTla~~L~~~~---~~~~~~Is~D~~ 69 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFEET---QGNVIVIDNDTF 69 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHT---TTCCEEECTHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechHh
Confidence 358899999999999999999876 234566665443
No 257
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.19 E-value=0.0087 Score=61.68 Aligned_cols=36 Identities=17% Similarity=0.477 Sum_probs=28.1
Q ss_pred eEEEeecCCcchHHHHHHHHHHHhcCCCCceEEeccccc
Q 003094 562 ASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEF 600 (848)
Q Consensus 562 ~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~ 600 (848)
..++|.|+||+||||+|+.|++.+ +...+.+|...+
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~~l---~~~~~~~~~D~~ 68 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQKEF---QGNIVIIDGDSF 68 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHHHT---TTCCEEECGGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc---CCCcEEEecHHH
Confidence 458999999999999999999987 334555565554
No 258
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.19 E-value=0.0024 Score=62.34 Aligned_cols=26 Identities=38% Similarity=0.535 Sum_probs=23.3
Q ss_pred CCCCCcEEECCCCCcHHHHHHHHHHH
Q 003094 216 RTKNNPCLIGEPGVGKTAIAEGLAQR 241 (848)
Q Consensus 216 ~~~~~iLL~GppGtGKT~la~~la~~ 241 (848)
+.+.+++|+|+||+||||+++.|++.
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 34567899999999999999999998
No 259
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.14 E-value=0.011 Score=62.73 Aligned_cols=33 Identities=30% Similarity=0.436 Sum_probs=27.5
Q ss_pred CCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeC
Q 003094 219 NNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDM 261 (848)
Q Consensus 219 ~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~ 261 (848)
..++|+||+|+|||+++..||+.+ +..++..|.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l----------~~~iis~Ds 38 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL----------PCELISVDS 38 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS----------CEEEEEECT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc----------CCcEEeccc
Confidence 467899999999999999999988 456666653
No 260
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.13 E-value=0.032 Score=61.81 Aligned_cols=38 Identities=32% Similarity=0.227 Sum_probs=28.7
Q ss_pred CCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCC
Q 003094 218 KNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMG 262 (848)
Q Consensus 218 ~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~ 262 (848)
+.-++++||+|+||||++..||..+... +.++..+++.
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~-------G~kVllv~~D 134 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKR-------GYKVGLVAAD 134 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHT-------TCCEEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc-------CCeEEEEecC
Confidence 3446788999999999999999988642 4556655543
No 261
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.12 E-value=0.073 Score=59.15 Aligned_cols=42 Identities=21% Similarity=0.278 Sum_probs=32.4
Q ss_pred CCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcc
Q 003094 217 TKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLL 264 (848)
Q Consensus 217 ~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l 264 (848)
.+..++++|++|+||||++..||..+... .|.++..+++...
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~------~G~kVllvd~D~~ 140 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREK------HKKKVLVVSADVY 140 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHT------SCCCEEEEECCCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHh------cCCeEEEEecCCC
Confidence 34567889999999999999999988642 1567777777643
No 262
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.11 E-value=0.01 Score=64.84 Aligned_cols=88 Identities=19% Similarity=0.291 Sum_probs=48.5
Q ss_pred eEEEeecCCcchHHHHHHHHHHHhcCC-CCceEEecccccccccchhcccCCCCCCccc-----c---cccchhHHHHcC
Q 003094 562 ASFIFSGPTGVGKSELAKALAAYYFGS-EEAMIRLDMSEFMERHTVSKLIGSPPGYVGY-----T---EGGQLTEAVRRR 632 (848)
Q Consensus 562 ~~lLl~Gp~GtGKT~lA~~la~~l~~~-~~~~i~i~~~~~~~~~~~~~l~g~~~g~~g~-----~---~~~~l~~~~~~~ 632 (848)
..+++.||+|+||||+.++|+..+... ...++.++-. .. ......-+++.. . -...+...++.
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~-~e------~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~- 208 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP-IE------YVFKHKKSIVNQREVGEDTKSFADALRAALRE- 208 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESS-CC------SCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTS-
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEeccc-Hh------hhhccCceEEEeeecCCCHHHHHHHHHHHhhh-
Confidence 468999999999999999999987322 2334333211 10 000011111111 1 11234444554
Q ss_pred CCeEEEEcCCCcCChHHHHHHHhhhcC
Q 003094 633 PYTVVLFDEIEKAHPDVFNMMLQILED 659 (848)
Q Consensus 633 ~~~Vl~lDEid~l~~~~~~~Ll~~le~ 659 (848)
.+.+|++||+- +++....+++....
T Consensus 209 ~pd~illdE~~--d~e~~~~~l~~~~~ 233 (372)
T 2ewv_A 209 DPDVIFVGEMR--DLETVETALRAAET 233 (372)
T ss_dssp CCSEEEESCCC--SHHHHHHHHHHHTT
T ss_pred CcCEEEECCCC--CHHHHHHHHHHHhc
Confidence 46799999997 45555555555544
No 263
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.07 E-value=0.014 Score=59.44 Aligned_cols=93 Identities=17% Similarity=0.209 Sum_probs=48.7
Q ss_pred EEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccc--cc--------hhcccCCCCC--CcccccccchhHHHH-
Q 003094 564 FIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMER--HT--------VSKLIGSPPG--YVGYTEGGQLTEAVR- 630 (848)
Q Consensus 564 lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~--~~--------~~~l~g~~~g--~~g~~~~~~l~~~~~- 630 (848)
++++||+|+|||.+|..++..+ ....++.+....+... .. +..+.|.... .+-....+.+.....
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~~--~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g~~~~~~~i~v~T~~~l~~~~~~ 188 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINEL--STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIKELKPLTVSTYDSAYVNAEK 188 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHHS--CSCEEEEESSHHHHHHHHHHHGGGCGGGEEEESSSCBCCCSEEEEEHHHHHHTHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHc--CCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeCCCCCcCCEEEEeHHHHHhhHHH
Confidence 7899999999999998888765 2233333333222211 00 1111111000 000000011111111
Q ss_pred -cCCCeEEEEcCCCcCChHHHHHHHhhhc
Q 003094 631 -RRPYTVVLFDEIEKAHPDVFNMMLQILE 658 (848)
Q Consensus 631 -~~~~~Vl~lDEid~l~~~~~~~Ll~~le 658 (848)
.....+|+|||++.++......++..+.
T Consensus 189 ~~~~~~llIiDEaH~l~~~~~~~i~~~~~ 217 (237)
T 2fz4_A 189 LGNRFMLLIFDEVHHLPAESYVQIAQMSI 217 (237)
T ss_dssp HTTTCSEEEEECSSCCCTTTHHHHHHTCC
T ss_pred hcccCCEEEEECCccCCChHHHHHHHhcc
Confidence 1346899999999998776666666654
No 264
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.06 E-value=0.0038 Score=61.81 Aligned_cols=29 Identities=31% Similarity=0.489 Sum_probs=24.9
Q ss_pred EEEeecCCcchHHHHHHHHHHHhcCCCCceEE
Q 003094 563 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIR 594 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~ 594 (848)
.++|.||+|+||||+++.|++.+ +.+++.
T Consensus 27 ~i~l~G~~GsGKsTl~~~La~~l---~~~~i~ 55 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLGKAFARKL---NVPFID 55 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH---TCCEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc---CCCEEc
Confidence 58999999999999999999988 555543
No 265
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.05 E-value=0.0045 Score=61.29 Aligned_cols=34 Identities=26% Similarity=0.364 Sum_probs=26.3
Q ss_pred CCCCceEEEeecCCcchHHHHHHHHHHHhcCCCCceEE
Q 003094 557 PNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIR 594 (848)
Q Consensus 557 ~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~ 594 (848)
+..|. .++|.|+||+||||+|+.|++.+ +.+++.
T Consensus 17 ~~~~~-~I~l~G~~GsGKST~a~~La~~l---~~~~i~ 50 (201)
T 2cdn_A 17 RGSHM-RVLLLGPPGAGKGTQAVKLAEKL---GIPQIS 50 (201)
T ss_dssp CCSCC-EEEEECCTTSSHHHHHHHHHHHH---TCCEEE
T ss_pred CCCCe-EEEEECCCCCCHHHHHHHHHHHh---CCcEEe
Confidence 34443 48899999999999999999987 444443
No 266
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.05 E-value=0.0027 Score=60.80 Aligned_cols=26 Identities=31% Similarity=0.455 Sum_probs=23.0
Q ss_pred CCCCcEEECCCCCcHHHHHHHHHHHh
Q 003094 217 TKNNPCLIGEPGVGKTAIAEGLAQRI 242 (848)
Q Consensus 217 ~~~~iLL~GppGtGKT~la~~la~~l 242 (848)
...+++|.|+||+||||+++.|++.+
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHh
Confidence 45688999999999999999999998
No 267
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.04 E-value=0.0065 Score=61.25 Aligned_cols=34 Identities=18% Similarity=0.264 Sum_probs=24.7
Q ss_pred EEEeecCCcchHHHHHHHHHHHhcCCCCceEEec
Q 003094 563 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLD 596 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~ 596 (848)
.++++||+|+|||++++.++..+...+..++.++
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 4789999999999999999966532233444443
No 268
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.04 E-value=0.0034 Score=60.64 Aligned_cols=24 Identities=38% Similarity=0.588 Sum_probs=22.5
Q ss_pred CCcEEECCCCCcHHHHHHHHHHHh
Q 003094 219 NNPCLIGEPGVGKTAIAEGLAQRI 242 (848)
Q Consensus 219 ~~iLL~GppGtGKT~la~~la~~l 242 (848)
.+++|.|+||+||||+++.|++.+
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 468999999999999999999998
No 269
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.03 E-value=0.026 Score=62.57 Aligned_cols=40 Identities=20% Similarity=0.227 Sum_probs=30.8
Q ss_pred ceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEeccccc
Q 003094 561 IASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEF 600 (848)
Q Consensus 561 ~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~ 600 (848)
...++|.||+|+||||++..||..+...+.....+++..+
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~ 136 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVY 136 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCcc
Confidence 4568899999999999999999888555556655555543
No 270
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.02 E-value=0.012 Score=68.67 Aligned_cols=27 Identities=19% Similarity=0.313 Sum_probs=22.5
Q ss_pred CCeEEEEcCCCcCChHHHHHHHhhhcC
Q 003094 633 PYTVVLFDEIEKAHPDVFNMMLQILED 659 (848)
Q Consensus 633 ~~~Vl~lDEid~l~~~~~~~Ll~~le~ 659 (848)
+..+|++||++.++...+..|++.+..
T Consensus 262 ~~d~lIIDEAsml~~~~~~~Ll~~l~~ 288 (608)
T 1w36_D 262 HLDVLVVDEASMIDLPMMSRLIDALPD 288 (608)
T ss_dssp SCSEEEECSGGGCBHHHHHHHHHTCCT
T ss_pred CCCEEEEechhhCCHHHHHHHHHhCCC
Confidence 356999999999998888888887743
No 271
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.02 E-value=0.018 Score=62.29 Aligned_cols=84 Identities=19% Similarity=0.173 Sum_probs=48.2
Q ss_pred EEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhcccCCCCCC--cc-cccccc----hhHHHHcCCCe
Q 003094 563 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGY--VG-YTEGGQ----LTEAVRRRPYT 635 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~--~g-~~~~~~----l~~~~~~~~~~ 635 (848)
.++++||||+|||+++..++..+...+..++.++.......... .-+|..... +. ...... +...++.....
T Consensus 63 i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra-~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~~~~d 141 (356)
T 3hr8_A 63 IVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYA-KNLGVDLKSLLISQPDHGEQALEIVDELVRSGVVD 141 (356)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHH-HHHTCCGGGCEEECCSSHHHHHHHHHHHHHTSCCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHH-HHcCCchhhhhhhhccCHHHHHHHHHHHhhhcCCC
Confidence 57899999999999999999876444556666665543222111 112221110 00 001111 22233345678
Q ss_pred EEEEcCCCcCCh
Q 003094 636 VVLFDEIEKAHP 647 (848)
Q Consensus 636 Vl~lDEid~l~~ 647 (848)
+++||.+..+.+
T Consensus 142 lvVIDSi~~l~~ 153 (356)
T 3hr8_A 142 LIVVDSVAALVP 153 (356)
T ss_dssp EEEEECTTTCCC
T ss_pred eEEehHhhhhcC
Confidence 999999998765
No 272
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.00 E-value=0.0026 Score=62.47 Aligned_cols=23 Identities=30% Similarity=0.566 Sum_probs=21.2
Q ss_pred EEeecCCcchHHHHHHHHHHHhc
Q 003094 564 FIFSGPTGVGKSELAKALAAYYF 586 (848)
Q Consensus 564 lLl~Gp~GtGKT~lA~~la~~l~ 586 (848)
+.|.||+|+||||+.+.|+..+.
T Consensus 4 i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 4 VFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp EEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHHhhcc
Confidence 78999999999999999998874
No 273
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.00 E-value=0.0037 Score=59.85 Aligned_cols=23 Identities=22% Similarity=0.180 Sum_probs=21.6
Q ss_pred CcEEECCCCCcHHHHHHHHHHHh
Q 003094 220 NPCLIGEPGVGKTAIAEGLAQRI 242 (848)
Q Consensus 220 ~iLL~GppGtGKT~la~~la~~l 242 (848)
.++|.|+||+||||+++.|++.+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999988
No 274
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.97 E-value=0.0047 Score=59.17 Aligned_cols=29 Identities=28% Similarity=0.355 Sum_probs=24.2
Q ss_pred EEEeecCCcchHHHHHHHHHHHhcCCCCceEE
Q 003094 563 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIR 594 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~ 594 (848)
.++|.||+|+||||+++.|++.+ +.+++.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l---~~~~i~ 31 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL---KYPIIK 31 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH---CCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCeeec
Confidence 37899999999999999999987 445543
No 275
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.97 E-value=0.0036 Score=60.94 Aligned_cols=24 Identities=38% Similarity=0.697 Sum_probs=22.4
Q ss_pred CCcEEECCCCCcHHHHHHHHHHHh
Q 003094 219 NNPCLIGEPGVGKTAIAEGLAQRI 242 (848)
Q Consensus 219 ~~iLL~GppGtGKT~la~~la~~l 242 (848)
..|+|+|+||+||||+++.|++.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 458899999999999999999988
No 276
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.96 E-value=0.015 Score=63.01 Aligned_cols=103 Identities=12% Similarity=0.193 Sum_probs=57.5
Q ss_pred CCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeC-Cccccc-------ccccchHHHHHHHHHHHHHh
Q 003094 216 RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDM-GLLVAG-------TKYRGEFEERLKKLMEEIKQ 287 (848)
Q Consensus 216 ~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~-~~l~~~-------~~~~g~~~~~l~~l~~~~~~ 287 (848)
.+...++++||+|+||||+.++++..+.... +..++.+.- -.+... ....+.....+...+..+-.
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~------~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~ 194 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYLNNTK------YHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALR 194 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHHHHHC------CCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccCCC------CcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhh
Confidence 3444788999999999999999999886310 122333221 000000 00001000123345566666
Q ss_pred CCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCCceEEEEeeChH
Q 003094 288 SDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATTLD 335 (848)
Q Consensus 288 ~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~atn~~ 335 (848)
.+|-+|++||.-. .+....+......|.. ++.++...
T Consensus 195 ~~PdvillDEp~d----------~e~~~~~~~~~~~G~~-vl~t~H~~ 231 (356)
T 3jvv_A 195 EDPDIILVGEMRD----------LETIRLALTAAETGHL-VFGTLHTT 231 (356)
T ss_dssp SCCSEEEESCCCS----------HHHHHHHHHHHHTTCE-EEEEESCS
T ss_pred hCcCEEecCCCCC----------HHHHHHHHHHHhcCCE-EEEEEccC
Confidence 7788999999952 3345555555556554 56666543
No 277
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.94 E-value=0.059 Score=57.33 Aligned_cols=39 Identities=23% Similarity=0.309 Sum_probs=29.5
Q ss_pred CCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeC
Q 003094 216 RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDM 261 (848)
Q Consensus 216 ~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~ 261 (848)
++..-++|.|+||+|||+++..+|...... +.+++++++
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a~~-------g~~vl~~sl 104 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNMSDN-------DDVVNLHSL 104 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHHTT-------TCEEEEEES
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHc-------CCeEEEEEC
Confidence 444557899999999999999999776532 356777765
No 278
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.93 E-value=0.0072 Score=64.42 Aligned_cols=24 Identities=29% Similarity=0.488 Sum_probs=22.0
Q ss_pred CCcEEECCCCCcHHHHHHHHHHHh
Q 003094 219 NNPCLIGEPGVGKTAIAEGLAQRI 242 (848)
Q Consensus 219 ~~iLL~GppGtGKT~la~~la~~l 242 (848)
..++|+||+|+|||+++..||+.+
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHC
Confidence 457899999999999999999988
No 279
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.91 E-value=0.0059 Score=58.62 Aligned_cols=25 Identities=44% Similarity=0.675 Sum_probs=22.8
Q ss_pred CCCcEEECCCCCcHHHHHHHHHHHh
Q 003094 218 KNNPCLIGEPGVGKTAIAEGLAQRI 242 (848)
Q Consensus 218 ~~~iLL~GppGtGKT~la~~la~~l 242 (848)
+..++|+||+|+||||+++.|+..+
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3568899999999999999999987
No 280
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.86 E-value=0.047 Score=53.39 Aligned_cols=34 Identities=24% Similarity=0.162 Sum_probs=27.6
Q ss_pred eEEEeecCCcchHHHHHHHHHHHhcCCCCceEEe
Q 003094 562 ASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRL 595 (848)
Q Consensus 562 ~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i 595 (848)
+.+++++++|.|||++|-.+|-...+.+..+..+
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~v 62 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVV 62 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 4588999999999999999997776666666555
No 281
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=95.84 E-value=0.033 Score=63.03 Aligned_cols=72 Identities=13% Similarity=0.136 Sum_probs=47.4
Q ss_pred eEEEEcccchhhhCCCCCchHHHHHHHhhhhc---CCceEEEEeeChHHHHhhhhcChhhhcccC-CCcCCCCCHHHHHH
Q 003094 291 IILFIDEVHTLIGAGAAEGAIDAANILKPSLA---RGELQCIGATTLDEYRKHIEKDPALERRFQ-PVKVPEPSVDETIQ 366 (848)
Q Consensus 291 ~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~---~~~v~vI~atn~~~~~~~~~~d~al~~Rf~-~i~~~~p~~~e~~~ 366 (848)
.+++|||++.++... ..++.+.+..+.. .-++.+|.+|..+... .++..+.+.|. .|.|...+..+...
T Consensus 299 ivlvIDE~~~ll~~~----~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~d---vl~~~i~~n~~~RI~lrv~s~~dsr~ 371 (512)
T 2ius_A 299 IVVLVDEFADLMMTV----GKKVEELIARLAQKARAAGIHLVLATQRPSVD---VITGLIKANIPTRIAFTVSSKIDSRT 371 (512)
T ss_dssp EEEEEETHHHHHHHH----HHHHHHHHHHHHHHCGGGTEEEEEEESCCCTT---TSCHHHHHHCCEEEEECCSSHHHHHH
T ss_pred EEEEEeCHHHHHhhh----hHHHHHHHHHHHHHhhhCCcEEEEEecCCccc---cccHHHHhhcCCeEEEEcCCHHHHHH
Confidence 589999999887421 1234444444433 3367888888776421 36777888886 78888888888776
Q ss_pred HHH
Q 003094 367 ILK 369 (848)
Q Consensus 367 Il~ 369 (848)
|+.
T Consensus 372 ilg 374 (512)
T 2ius_A 372 ILD 374 (512)
T ss_dssp HHS
T ss_pred hcC
Confidence 664
No 282
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.82 E-value=0.0054 Score=58.69 Aligned_cols=30 Identities=27% Similarity=0.406 Sum_probs=25.6
Q ss_pred eEEEeecCCcchHHHHHHHHHHHhcCCCCceEE
Q 003094 562 ASFIFSGPTGVGKSELAKALAAYYFGSEEAMIR 594 (848)
Q Consensus 562 ~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~ 594 (848)
.+++|.|++|+||||+++.||+.+ +.+++.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l---g~~~id 37 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL---KLEVLD 37 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH---TCCEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh---CCCEEE
Confidence 468999999999999999999987 555543
No 283
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.80 E-value=0.014 Score=63.17 Aligned_cols=83 Identities=17% Similarity=0.209 Sum_probs=46.7
Q ss_pred EEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhcccCCCCCCc---ccccccch----hHHHHcCCCe
Q 003094 563 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYV---GYTEGGQL----TEAVRRRPYT 635 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~~---g~~~~~~l----~~~~~~~~~~ 635 (848)
.++++||||+|||+++..++......+...+.++...-.... ....+|...... .......+ ...++.....
T Consensus 63 iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~-~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~~~~~ 141 (349)
T 2zr9_A 63 VIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPE-YAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGALD 141 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH-HHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHH-HHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhcCCCC
Confidence 478999999999999999987654445556666654322211 111122211000 00011112 2233345678
Q ss_pred EEEEcCCCcCC
Q 003094 636 VVLFDEIEKAH 646 (848)
Q Consensus 636 Vl~lDEid~l~ 646 (848)
+||||++..+.
T Consensus 142 lIVIDsl~~l~ 152 (349)
T 2zr9_A 142 IIVIDSVAALV 152 (349)
T ss_dssp EEEEECGGGCC
T ss_pred EEEEcChHhhc
Confidence 99999999886
No 284
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.80 E-value=0.0048 Score=59.53 Aligned_cols=22 Identities=50% Similarity=0.662 Sum_probs=21.2
Q ss_pred EEeecCCcchHHHHHHHHHHHh
Q 003094 564 FIFSGPTGVGKSELAKALAAYY 585 (848)
Q Consensus 564 lLl~Gp~GtGKT~lA~~la~~l 585 (848)
++|.||||+|||++|+.||+.+
T Consensus 7 i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 7 IVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHc
Confidence 8899999999999999999987
No 285
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.80 E-value=0.008 Score=60.08 Aligned_cols=34 Identities=24% Similarity=0.233 Sum_probs=26.2
Q ss_pred EEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccc
Q 003094 563 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSE 599 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~ 599 (848)
.++++||||+|||++++.++. . .+.+.+.++...
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~-~--~~~~v~~i~~~~ 55 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL-L--SGKKVAYVDTEG 55 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH-H--HCSEEEEEESSC
T ss_pred EEEEECCCCCCHHHHHHHHHH-H--cCCcEEEEECCC
Confidence 478999999999999999997 2 245566666543
No 286
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.80 E-value=0.0047 Score=62.12 Aligned_cols=26 Identities=38% Similarity=0.570 Sum_probs=23.5
Q ss_pred CCCCcEEECCCCCcHHHHHHHHHHHh
Q 003094 217 TKNNPCLIGEPGVGKTAIAEGLAQRI 242 (848)
Q Consensus 217 ~~~~iLL~GppGtGKT~la~~la~~l 242 (848)
++..|+|.|+||+||||+++.|++.+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45678999999999999999999988
No 287
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.79 E-value=0.016 Score=63.11 Aligned_cols=83 Identities=22% Similarity=0.223 Sum_probs=46.4
Q ss_pred EEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhcccCCCCC--Cc-ccccccch----hHHHHcCCCe
Q 003094 563 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPG--YV-GYTEGGQL----TEAVRRRPYT 635 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g--~~-g~~~~~~l----~~~~~~~~~~ 635 (848)
.++++||||+|||++|..++......+.+++.++...-.+... ..-+|.... ++ .......+ ...++.....
T Consensus 76 li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~-a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~~~~~ 154 (366)
T 1xp8_A 76 ITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVY-ARALGVNTDELLVSQPDNGEQALEIMELLVRSGAID 154 (366)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHH-HHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCS
T ss_pred EEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHH-HHHcCCCHHHceeecCCcHHHHHHHHHHHHhcCCCC
Confidence 4788999999999999988876543455666666543222111 111221110 00 00011122 2223345678
Q ss_pred EEEEcCCCcCC
Q 003094 636 VVLFDEIEKAH 646 (848)
Q Consensus 636 Vl~lDEid~l~ 646 (848)
+||||.+..+.
T Consensus 155 lVVIDsl~~l~ 165 (366)
T 1xp8_A 155 VVVVDSVAALT 165 (366)
T ss_dssp EEEEECTTTCC
T ss_pred EEEEeChHHhc
Confidence 99999999875
No 288
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.79 E-value=0.008 Score=58.78 Aligned_cols=95 Identities=12% Similarity=0.045 Sum_probs=51.3
Q ss_pred cEEECCCCCcHH-HHHHHHHHHhhCCCCCCCCCCceEEEEeCC---cccccccc-cch-----HHHHHHHHHHHHHhCCC
Q 003094 221 PCLIGEPGVGKT-AIAEGLAQRIASGDVPDTIEGKKVITLDMG---LLVAGTKY-RGE-----FEERLKKLMEEIKQSDE 290 (848)
Q Consensus 221 iLL~GppGtGKT-~la~~la~~l~~~~~~~~l~~~~v~~~~~~---~l~~~~~~-~g~-----~~~~l~~l~~~~~~~~~ 290 (848)
.+++||.|+||| .|.+.+.+.... +.+++.+... .+..+... .|. .......+++..+..
T Consensus 23 ~fiyG~MgsGKTt~Ll~~i~n~~~~--------~~kvl~~kp~~D~R~~~~i~S~~g~~~~A~~~~~~~d~~~~~~~~-- 92 (195)
T 1w4r_A 23 QVILGPMFSGKSTELMRRVRRFQIA--------QYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQEALGV-- 92 (195)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHT--------TCCEEEEEETTCCCGGGSCCHHHHHHSEEEEESSGGGGHHHHHTC--
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHc--------CCeEEEEccccCccchhhhhhccCCcccceecCCHHHHHHhccCC--
Confidence 468999999999 788888887754 4566666532 11100000 000 000011222333333
Q ss_pred eEEEEcccchhhhCCCCCchHHHHHHHhhhhcCCceEEEEeeChH
Q 003094 291 IILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATTLD 335 (848)
Q Consensus 291 ~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~atn~~ 335 (848)
-+|+|||+.-+ +. ..+.+..+.+. ++.||.++=..
T Consensus 93 DvIlIDEaQFf-k~--------~ve~~~~L~~~-gk~VI~~GL~~ 127 (195)
T 1w4r_A 93 AVIGIDEGQFF-PD--------IVEFCEAMANA-GKTVIVAALDG 127 (195)
T ss_dssp SEEEESSGGGC-TT--------HHHHHHHHHHT-TCEEEEEEESB
T ss_pred CEEEEEchhhh-HH--------HHHHHHHHHHC-CCeEEEEeccc
Confidence 28999999998 33 44455444444 45666665433
No 289
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.76 E-value=0.0052 Score=59.99 Aligned_cols=38 Identities=21% Similarity=0.226 Sum_probs=29.1
Q ss_pred EEEeecCCcchHHHHHHHHHHHhcCCCCceEEeccccc
Q 003094 563 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEF 600 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~ 600 (848)
.++|.|+||+||||+++.|++.+...+.++..++.+++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~ 40 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDF 40 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChH
Confidence 37899999999999999999988544445665554443
No 290
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.75 E-value=0.0036 Score=61.31 Aligned_cols=25 Identities=28% Similarity=0.480 Sum_probs=22.6
Q ss_pred CCCcEEECCCCCcHHHHHHHHHHHh
Q 003094 218 KNNPCLIGEPGVGKTAIAEGLAQRI 242 (848)
Q Consensus 218 ~~~iLL~GppGtGKT~la~~la~~l 242 (848)
+..++|.|+||+||||+++.|++.+
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4467899999999999999999988
No 291
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.75 E-value=0.027 Score=56.50 Aligned_cols=92 Identities=9% Similarity=-0.043 Sum_probs=46.2
Q ss_pred EEEeecCCcchHHHHHHHHHHHhcCCCCceEEec--ccccccccchhcccCCCCCCcccccccchhHHHHcCCCeEEEEc
Q 003094 563 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLD--MSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFD 640 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~--~~~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~Vl~lD 640 (848)
-.+++||.|+|||+.+-..+.-+.+.+...+.+. ...-......+++ |......+......+.+.+ .+..+|+||
T Consensus 21 l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~Ryg~~i~sr~-G~~~~a~~i~~~~di~~~~--~~~dvViID 97 (234)
T 2orv_A 21 IQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHD-RNTMEALPACLLRDVAQEA--LGVAVIGID 97 (234)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCCC------------CEEEEESSGGGGHHHH--TTCSEEEES
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCccchHHHHhhc-CCeeEEEecCCHHHHHHHh--ccCCEEEEE
Confidence 3568999999999665554444434555554443 2111111112222 3221111111112344444 346799999
Q ss_pred CCCcCChHHHHHHHhhhcC
Q 003094 641 EIEKAHPDVFNMMLQILED 659 (848)
Q Consensus 641 Eid~l~~~~~~~Ll~~le~ 659 (848)
|++-+.. ...+.+.+++
T Consensus 98 EaQF~~~--v~el~~~l~~ 114 (234)
T 2orv_A 98 EGQFFPD--IVEFCEAMAN 114 (234)
T ss_dssp SGGGCTT--HHHHHHHHHH
T ss_pred chhhhhh--HHHHHHHHHh
Confidence 9999975 5566666654
No 292
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.74 E-value=0.0057 Score=58.68 Aligned_cols=24 Identities=25% Similarity=0.506 Sum_probs=22.4
Q ss_pred CCcEEECCCCCcHHHHHHHHHHHh
Q 003094 219 NNPCLIGEPGVGKTAIAEGLAQRI 242 (848)
Q Consensus 219 ~~iLL~GppGtGKT~la~~la~~l 242 (848)
..++|.|+||+||||+++.|++.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999988
No 293
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.70 E-value=0.0057 Score=63.09 Aligned_cols=23 Identities=30% Similarity=0.300 Sum_probs=21.4
Q ss_pred CcEEECCCCCcHHHHHHHHHHHh
Q 003094 220 NPCLIGEPGVGKTAIAEGLAQRI 242 (848)
Q Consensus 220 ~iLL~GppGtGKT~la~~la~~l 242 (848)
.++|+||||+||||+++.||+.+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 46899999999999999999988
No 294
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.69 E-value=0.0055 Score=60.62 Aligned_cols=27 Identities=33% Similarity=0.538 Sum_probs=23.5
Q ss_pred CCCCCcEEECCCCCcHHHHHHHHHHHh
Q 003094 216 RTKNNPCLIGEPGVGKTAIAEGLAQRI 242 (848)
Q Consensus 216 ~~~~~iLL~GppGtGKT~la~~la~~l 242 (848)
..+..|+|+|+||+||||+++.|++.+
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 334468899999999999999999988
No 295
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.69 E-value=0.006 Score=59.29 Aligned_cols=28 Identities=25% Similarity=0.430 Sum_probs=24.0
Q ss_pred EEeecCCcchHHHHHHHHHHHhcCCCCceEE
Q 003094 564 FIFSGPTGVGKSELAKALAAYYFGSEEAMIR 594 (848)
Q Consensus 564 lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~ 594 (848)
++|.|+||+|||++|+.|++.+ +.+++.
T Consensus 5 I~l~G~~GsGKsT~a~~La~~l---g~~~id 32 (184)
T 2iyv_A 5 AVLVGLPGSGKSTIGRRLAKAL---GVGLLD 32 (184)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH---TCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHc---CCCEEe
Confidence 8899999999999999999987 455543
No 296
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.65 E-value=0.0069 Score=62.47 Aligned_cols=32 Identities=28% Similarity=0.387 Sum_probs=26.1
Q ss_pred EEEeecCCcchHHHHHHHHHHHhcCCCCceEEecc
Q 003094 563 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDM 597 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~ 597 (848)
.+++.||||+|||++|+.||+.+ +..++..|-
T Consensus 3 li~I~G~~GSGKSTla~~La~~~---~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET---GWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH---CCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcC---CCeEEeccH
Confidence 37899999999999999999987 455655543
No 297
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.64 E-value=0.026 Score=57.34 Aligned_cols=25 Identities=28% Similarity=0.529 Sum_probs=21.5
Q ss_pred CCCCcEEECCCCCcHHHHHHHHHHH
Q 003094 217 TKNNPCLIGEPGVGKTAIAEGLAQR 241 (848)
Q Consensus 217 ~~~~iLL~GppGtGKT~la~~la~~ 241 (848)
....++|+|++|+|||++++.|...
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHcCC
Confidence 3457899999999999999998864
No 298
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.64 E-value=0.0054 Score=60.15 Aligned_cols=26 Identities=31% Similarity=0.510 Sum_probs=23.3
Q ss_pred CCCCcEEECCCCCcHHHHHHHHHHHh
Q 003094 217 TKNNPCLIGEPGVGKTAIAEGLAQRI 242 (848)
Q Consensus 217 ~~~~iLL~GppGtGKT~la~~la~~l 242 (848)
.+..++|.|+||+||||+++.|++.+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 34568899999999999999999988
No 299
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=95.64 E-value=0.02 Score=56.77 Aligned_cols=95 Identities=15% Similarity=0.232 Sum_probs=49.4
Q ss_pred EEeecCCcchHHH-HHHHHHHHhcCCCCceEEecc--cccccccchhcccCCCCCCcccccccchhHHHHcCCCeEEEEc
Q 003094 564 FIFSGPTGVGKSE-LAKALAAYYFGSEEAMIRLDM--SEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFD 640 (848)
Q Consensus 564 lLl~Gp~GtGKT~-lA~~la~~l~~~~~~~i~i~~--~~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~Vl~lD 640 (848)
.+++||-|+|||+ +.+.+.++.. .+...+.+.. ..-.....+..-+|......-......+.+.+ ..+..+|+||
T Consensus 31 ~vitG~M~sGKTT~Llr~~~r~~~-~g~kvli~kp~~D~R~~~~~I~Sr~G~~~~a~~v~~~~di~~~i-~~~~dvV~ID 108 (219)
T 3e2i_A 31 ECITGSMFSGKSEELIRRLRRGIY-AKQKVVVFKPAIDDRYHKEKVVSHNGNAIEAINISKASEIMTHD-LTNVDVIGID 108 (219)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHH-TTCCEEEEEEC-----------CBTTBCCEEEEESSGGGGGGSC-CTTCSEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-cCCceEEEEeccCCcchhhhHHHhcCCceeeEEeCCHHHHHHHH-hcCCCEEEEe
Confidence 5789999999998 6666655543 2333333322 11111111211122111111011112222222 2355699999
Q ss_pred CCCcCChHHHHHHHhhhcCc
Q 003094 641 EIEKAHPDVFNMMLQILEDG 660 (848)
Q Consensus 641 Eid~l~~~~~~~Ll~~le~g 660 (848)
|++-+++++.+.+..+.+.|
T Consensus 109 EaQFf~~~~v~~l~~la~~g 128 (219)
T 3e2i_A 109 EVQFFDDEIVSIVEKLSADG 128 (219)
T ss_dssp CGGGSCTHHHHHHHHHHHTT
T ss_pred chhcCCHHHHHHHHHHHHCC
Confidence 99999999999888887553
No 300
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.62 E-value=0.029 Score=54.93 Aligned_cols=109 Identities=17% Similarity=0.126 Sum_probs=60.2
Q ss_pred CCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCc---------ccc-----------cccccc----
Q 003094 217 TKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGL---------LVA-----------GTKYRG---- 272 (848)
Q Consensus 217 ~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~---------l~~-----------~~~~~g---- 272 (848)
.+.++++++++|.||||+|-++|.+.... |.+|..+..-. +.. +-.+..
T Consensus 27 ~~g~i~v~tG~GkGKTTaA~GlalRA~g~-------G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~ 99 (196)
T 1g5t_A 27 ERGIIIVFTGNGKGKTTAAFGTAARAVGH-------GKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNRE 99 (196)
T ss_dssp CCCCEEEEESSSSCHHHHHHHHHHHHHHT-------TCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHH
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHHC-------CCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcH
Confidence 46788999999999999999999887653 45566553211 000 000000
Q ss_pred hHHHHHHHHHHHHH----hCCCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCCceEEEEeeChH
Q 003094 273 EFEERLKKLMEEIK----QSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATTLD 335 (848)
Q Consensus 273 ~~~~~l~~l~~~~~----~~~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~atn~~ 335 (848)
+-+......+..++ ....-+|+|||+.....-+-- ...++.++|..- ....-+|.|++..
T Consensus 100 ~~~~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l-~~~ev~~~l~~R--p~~~~vIlTGr~a 163 (196)
T 1g5t_A 100 ADTAACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYL-PLEEVISALNAR--PGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSS-CHHHHHHHHHTS--CTTCEEEEECSSC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCC-CHHHHHHHHHhC--cCCCEEEEECCCC
Confidence 01122233333333 233459999999876543211 122344444322 3456778888754
No 301
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.62 E-value=0.031 Score=62.80 Aligned_cols=41 Identities=27% Similarity=0.379 Sum_probs=29.9
Q ss_pred cCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeC
Q 003094 215 RRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDM 261 (848)
Q Consensus 215 ~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~ 261 (848)
-++..-++|.|+||+|||+++..++..+... .+.++++++.
T Consensus 200 l~~G~liiI~G~pG~GKTtl~l~ia~~~~~~------~g~~Vl~~s~ 240 (454)
T 2r6a_A 200 FQRSDLIIVAARPSVGKTAFALNIAQNVATK------TNENVAIFSL 240 (454)
T ss_dssp BCTTCEEEEECCTTSCHHHHHHHHHHHHHHH------SSCCEEEEES
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHh------CCCcEEEEEC
Confidence 3445557899999999999999999877531 1345666664
No 302
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.61 E-value=0.0062 Score=59.02 Aligned_cols=23 Identities=39% Similarity=0.687 Sum_probs=21.7
Q ss_pred EEEeecCCcchHHHHHHHHHHHh
Q 003094 563 SFIFSGPTGVGKSELAKALAAYY 585 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l 585 (848)
.++|+|+||+|||++++.|++.+
T Consensus 13 ~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 13 NILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999987
No 303
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.60 E-value=0.0071 Score=59.87 Aligned_cols=25 Identities=24% Similarity=0.513 Sum_probs=22.9
Q ss_pred CCCcEEECCCCCcHHHHHHHHHHHh
Q 003094 218 KNNPCLIGEPGVGKTAIAEGLAQRI 242 (848)
Q Consensus 218 ~~~iLL~GppGtGKT~la~~la~~l 242 (848)
+..++|+|++|+||||+++.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4568899999999999999999988
No 304
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.60 E-value=0.011 Score=63.58 Aligned_cols=91 Identities=19% Similarity=0.285 Sum_probs=48.3
Q ss_pred EEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhcccCCCCCCcccccccchhHHHHcCCCeEEEEcCC
Q 003094 563 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEI 642 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEi 642 (848)
.+++.||+|+||||+.++|+..+. .....+.++-............++--.+ .|......+..++. ..+.+|++||.
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~~-~~~g~i~i~~~~e~~~~~~~~~i~~~~g-gg~~~r~~la~aL~-~~p~ilildE~ 249 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFIP-KEERIISIEDTEEIVFKHHKNYTQLFFG-GNITSADCLKSCLR-MRPDRIILGEL 249 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGSC-TTSCEEEEESSCCCCCSSCSSEEEEECB-TTBCHHHHHHHHTT-SCCSEEEECCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc-CCCcEEEECCeeccccccchhEEEEEeC-CChhHHHHHHHHhh-hCCCEEEEcCC
Confidence 489999999999999999998763 3344555543221000000000000000 12211122333444 34579999998
Q ss_pred CcCChHHHHHHHhhhcC
Q 003094 643 EKAHPDVFNMMLQILED 659 (848)
Q Consensus 643 d~l~~~~~~~Ll~~le~ 659 (848)
-. .++.+.| +.+..
T Consensus 250 ~~--~e~~~~l-~~~~~ 263 (330)
T 2pt7_A 250 RS--SEAYDFY-NVLCS 263 (330)
T ss_dssp CS--THHHHHH-HHHHT
T ss_pred Ch--HHHHHHH-HHHhc
Confidence 86 4565544 44444
No 305
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.60 E-value=0.027 Score=57.30 Aligned_cols=110 Identities=17% Similarity=0.128 Sum_probs=59.8
Q ss_pred CCCCCcEEECCCCCcHHHHHHHHHHHh-hCCCCCCCCCCceEEEEeCCcccc---------cc-----------------
Q 003094 216 RTKNNPCLIGEPGVGKTAIAEGLAQRI-ASGDVPDTIEGKKVITLDMGLLVA---------GT----------------- 268 (848)
Q Consensus 216 ~~~~~iLL~GppGtGKT~la~~la~~l-~~~~~~~~l~~~~v~~~~~~~l~~---------~~----------------- 268 (848)
++..-++|+|+||+|||+++..++... ..+ +..+++++...-.. +.
T Consensus 28 ~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~-------~~~v~~~s~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 100 (251)
T 2zts_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKGAEEY-------GEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGV 100 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHHHHHH-------CCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC--
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhc-------CCCceeecccCCHHHHHHHHHHcCCChHHHHhcCcchhhhhH
Confidence 344557899999999999998877542 221 23455554321000 00
Q ss_pred --------------cccchHHHHHHHHHHHHHhCCCeEEEEcccchhhhCCCC-CchHHHHHHHhhhhcCCceEEEEee
Q 003094 269 --------------KYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAA-EGAIDAANILKPSLARGELQCIGAT 332 (848)
Q Consensus 269 --------------~~~g~~~~~l~~l~~~~~~~~~~IL~IDEid~l~~~~~~-~~~~~~~~~L~~~l~~~~v~vI~at 332 (848)
.........+..+...+...++.+++||.+..+...... .........|+.+...-++.++.++
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~ 179 (251)
T 2zts_A 101 SSVVGLPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTT 179 (251)
T ss_dssp -----------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEE
T ss_pred HHHhhcccchhccccccccHHHHHHHHHHHHHhcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEE
Confidence 000011222333444455566778999999888643222 2233455566666655556666554
No 306
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.55 E-value=0.0057 Score=58.56 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=19.7
Q ss_pred CcEEECCCCCcHHHHHHHHHHHh
Q 003094 220 NPCLIGEPGVGKTAIAEGLAQRI 242 (848)
Q Consensus 220 ~iLL~GppGtGKT~la~~la~~l 242 (848)
.++|+||||+||||+++.| +.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHT
T ss_pred EEEEECCCCCCHHHHHHHH-HHC
Confidence 5789999999999999999 665
No 307
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.55 E-value=0.0065 Score=58.30 Aligned_cols=23 Identities=35% Similarity=0.673 Sum_probs=21.4
Q ss_pred EEEeecCCcchHHHHHHHHHHHh
Q 003094 563 SFIFSGPTGVGKSELAKALAAYY 585 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l 585 (848)
.+.|.||+|+||||+++.|+..+
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 38899999999999999999986
No 308
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=95.55 E-value=0.089 Score=59.97 Aligned_cols=38 Identities=26% Similarity=0.316 Sum_probs=28.7
Q ss_pred eEEEeecCCcchHHHHHHHHHHHhcCC----CCceEEecccc
Q 003094 562 ASFIFSGPTGVGKSELAKALAAYYFGS----EEAMIRLDMSE 599 (848)
Q Consensus 562 ~~lLl~Gp~GtGKT~lA~~la~~l~~~----~~~~i~i~~~~ 599 (848)
.|+|+.|.||+|||.+.+.|...+... ...|+.+|...
T Consensus 215 pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpKg 256 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKM 256 (574)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSSS
T ss_pred CeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCCh
Confidence 479999999999999999876654221 34578888764
No 309
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.55 E-value=0.0087 Score=58.50 Aligned_cols=29 Identities=28% Similarity=0.428 Sum_probs=24.3
Q ss_pred EEEeecCCcchHHHHHHHHHHHhcCCCCceEE
Q 003094 563 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIR 594 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~ 594 (848)
.++|.|+||+||||+++.|++.+ +.+++.
T Consensus 7 ~I~l~G~~GsGKST~~~~L~~~l---~~~~i~ 35 (193)
T 2rhm_A 7 LIIVTGHPATGKTTLSQALATGL---RLPLLS 35 (193)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH---TCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHc---CCeEec
Confidence 48899999999999999999987 444544
No 310
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.53 E-value=0.0086 Score=58.37 Aligned_cols=29 Identities=38% Similarity=0.438 Sum_probs=24.5
Q ss_pred CCCCCcEEECCCCCcHHHHHHHHHHHhhC
Q 003094 216 RTKNNPCLIGEPGVGKTAIAEGLAQRIAS 244 (848)
Q Consensus 216 ~~~~~iLL~GppGtGKT~la~~la~~l~~ 244 (848)
..+..++|+|+||+||||+++.|+..+..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 34456789999999999999999999864
No 311
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.53 E-value=0.015 Score=58.58 Aligned_cols=23 Identities=35% Similarity=0.377 Sum_probs=20.8
Q ss_pred EEEeecCCcchHHHHHHHHHHHh
Q 003094 563 SFIFSGPTGVGKSELAKALAAYY 585 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l 585 (848)
.+.|.||+|+|||++++.|+..+
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999864
No 312
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.52 E-value=0.0072 Score=58.91 Aligned_cols=36 Identities=11% Similarity=0.147 Sum_probs=26.4
Q ss_pred EEEeecCCcchHHHHHHHHHHHhcCCCCceEEeccc
Q 003094 563 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMS 598 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~ 598 (848)
.++|.|+||+||||+++.|++.+...+.++..++.+
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~ 40 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFG 40 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehH
Confidence 488999999999999999999874333223344443
No 313
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.49 E-value=0.032 Score=59.57 Aligned_cols=88 Identities=17% Similarity=0.204 Sum_probs=50.0
Q ss_pred CCCCCcEEECCCCCcHHHHHHHHHHHhhCCC-----CCCCCCC----ceEEEEeCCcccc-----------cccc-----
Q 003094 216 RTKNNPCLIGEPGVGKTAIAEGLAQRIASGD-----VPDTIEG----KKVITLDMGLLVA-----------GTKY----- 270 (848)
Q Consensus 216 ~~~~~iLL~GppGtGKT~la~~la~~l~~~~-----~~~~l~~----~~v~~~~~~~l~~-----------~~~~----- 270 (848)
+...-++|+||||+|||+++..++....... +...-.+ ..+++++...... +...
T Consensus 96 ~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~~~ 175 (322)
T 2i1q_A 96 ESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTVLD 175 (322)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHHHhc
Confidence 3445578999999999999999997642100 0000012 5788888764310 0000
Q ss_pred -----c-chHH---HHHHHHHHHHHh-CCCeEEEEcccchhhh
Q 003094 271 -----R-GEFE---ERLKKLMEEIKQ-SDEIILFIDEVHTLIG 303 (848)
Q Consensus 271 -----~-g~~~---~~l~~l~~~~~~-~~~~IL~IDEid~l~~ 303 (848)
. ...+ ..+..+...+++ .++.+|+||.+..+..
T Consensus 176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~ 218 (322)
T 2i1q_A 176 NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFR 218 (322)
T ss_dssp TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHH
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHH
Confidence 0 0111 122233344444 5677999999999874
No 314
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.47 E-value=0.013 Score=56.46 Aligned_cols=24 Identities=29% Similarity=0.502 Sum_probs=21.9
Q ss_pred eEEEeecCCcchHHHHHHHHHHHh
Q 003094 562 ASFIFSGPTGVGKSELAKALAAYY 585 (848)
Q Consensus 562 ~~lLl~Gp~GtGKT~lA~~la~~l 585 (848)
..++|.||+|+|||++++.|+..+
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhh
Confidence 458899999999999999999886
No 315
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.45 E-value=0.0087 Score=60.11 Aligned_cols=23 Identities=30% Similarity=0.621 Sum_probs=21.7
Q ss_pred EEEeecCCcchHHHHHHHHHHHh
Q 003094 563 SFIFSGPTGVGKSELAKALAAYY 585 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l 585 (848)
.++|.|+||+||||+++.|++.+
T Consensus 6 ~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 6 RMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999987
No 316
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.44 E-value=0.0091 Score=64.04 Aligned_cols=42 Identities=36% Similarity=0.516 Sum_probs=30.8
Q ss_pred ChHHHHHHHHHh----ccCCCCCcEEECCCCCcHHHHHHHHHHHhh
Q 003094 202 RQPQIERVVQIL----GRRTKNNPCLIGEPGVGKTAIAEGLAQRIA 243 (848)
Q Consensus 202 ~~~~~~~l~~~l----~~~~~~~iLL~GppGtGKT~la~~la~~l~ 243 (848)
.+..++.+...+ ......+++|+||+|+||||+++.|+..+.
T Consensus 4 ~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 4 THKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 344444444443 344556799999999999999999999884
No 317
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=95.44 E-value=0.066 Score=62.47 Aligned_cols=37 Identities=24% Similarity=0.279 Sum_probs=27.5
Q ss_pred HHHHHHHHHhccCCCCCcEEECCCCCcHHHHHHHHHHHhh
Q 003094 204 PQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIA 243 (848)
Q Consensus 204 ~~~~~l~~~l~~~~~~~iLL~GppGtGKT~la~~la~~l~ 243 (848)
.+...+...+. .+.+++.|+||||||+++..+...+.
T Consensus 153 ~Q~~Ai~~~l~---~~~~vi~G~pGTGKTt~l~~ll~~l~ 189 (608)
T 1w36_D 153 WQKVAAAVALT---RRISVISGGPGTGKTTTVAKLLAALI 189 (608)
T ss_dssp HHHHHHHHHHT---BSEEEEECCTTSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc---CCCEEEEeCCCCCHHHHHHHHHHHHH
Confidence 34444444442 46789999999999999998887775
No 318
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.44 E-value=0.006 Score=61.25 Aligned_cols=25 Identities=40% Similarity=0.567 Sum_probs=22.9
Q ss_pred CCCcEEECCCCCcHHHHHHHHHHHh
Q 003094 218 KNNPCLIGEPGVGKTAIAEGLAQRI 242 (848)
Q Consensus 218 ~~~iLL~GppGtGKT~la~~la~~l 242 (848)
...|+|.|+||+||||+++.|++.+
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3568899999999999999999998
No 319
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.44 E-value=0.017 Score=62.57 Aligned_cols=84 Identities=17% Similarity=0.213 Sum_probs=48.0
Q ss_pred EEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhcccCCCCCC--ccc-ccccch----hHHHHcCCCe
Q 003094 563 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGY--VGY-TEGGQL----TEAVRRRPYT 635 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~--~g~-~~~~~l----~~~~~~~~~~ 635 (848)
.++++||||+|||++|..++......+.+.+.++...-.+.... .-+|..... +.. .....+ ...++.....
T Consensus 65 ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a-~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~~~~~ 143 (356)
T 1u94_A 65 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYA-RKLGVDIDNLLCSQPDTGEQALEICDALARSGAVD 143 (356)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHH-HHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHH-HHcCCChhheeeeCCCCHHHHHHHHHHHHhccCCC
Confidence 47899999999999999998776444556766776432221111 111211100 000 011112 2233456678
Q ss_pred EEEEcCCCcCCh
Q 003094 636 VVLFDEIEKAHP 647 (848)
Q Consensus 636 Vl~lDEid~l~~ 647 (848)
+||||.+..+.+
T Consensus 144 lVVIDsl~~l~~ 155 (356)
T 1u94_A 144 VIVVDSVAALTP 155 (356)
T ss_dssp EEEEECGGGCCC
T ss_pred EEEEcCHHHhcc
Confidence 999999998863
No 320
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.44 E-value=0.0061 Score=59.53 Aligned_cols=25 Identities=24% Similarity=0.473 Sum_probs=22.5
Q ss_pred CCCcEEECCCCCcHHHHHHHHHHHh
Q 003094 218 KNNPCLIGEPGVGKTAIAEGLAQRI 242 (848)
Q Consensus 218 ~~~iLL~GppGtGKT~la~~la~~l 242 (848)
+..++|.|+||+||||+++.|++.+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3457899999999999999999988
No 321
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.43 E-value=0.0064 Score=59.46 Aligned_cols=25 Identities=20% Similarity=0.399 Sum_probs=22.4
Q ss_pred CCCcEEECCCCCcHHHHHHHHHHHh
Q 003094 218 KNNPCLIGEPGVGKTAIAEGLAQRI 242 (848)
Q Consensus 218 ~~~iLL~GppGtGKT~la~~la~~l 242 (848)
+..|+|.|+||+||||+++.|++.+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3457899999999999999999988
No 322
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.43 E-value=0.0095 Score=61.00 Aligned_cols=26 Identities=23% Similarity=0.392 Sum_probs=23.3
Q ss_pred CCCCcEEECCCCCcHHHHHHHHHHHh
Q 003094 217 TKNNPCLIGEPGVGKTAIAEGLAQRI 242 (848)
Q Consensus 217 ~~~~iLL~GppGtGKT~la~~la~~l 242 (848)
.+..++|+||||+||||+++.|++.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 44568899999999999999999988
No 323
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.43 E-value=0.0081 Score=57.58 Aligned_cols=22 Identities=23% Similarity=0.472 Sum_probs=21.1
Q ss_pred EEeecCCcchHHHHHHHHHHHh
Q 003094 564 FIFSGPTGVGKSELAKALAAYY 585 (848)
Q Consensus 564 lLl~Gp~GtGKT~lA~~la~~l 585 (848)
++|.|++|+|||++|+.|++.+
T Consensus 5 I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 5 IFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8899999999999999999987
No 324
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.43 E-value=0.0092 Score=58.16 Aligned_cols=35 Identities=23% Similarity=0.488 Sum_probs=26.7
Q ss_pred EEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccc
Q 003094 563 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFM 601 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~ 601 (848)
.++|+|++|+|||++++.|++.++ + +..+|+..+.
T Consensus 12 ~I~l~G~~GsGKSTv~~~La~~l~--g--~~~id~d~~~ 46 (184)
T 1y63_A 12 NILITGTPGTGKTSMAEMIAAELD--G--FQHLEVGKLV 46 (184)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHST--T--EEEEEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC--C--CEEeeHHHHH
Confidence 589999999999999999999832 3 4445555543
No 325
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.41 E-value=0.023 Score=59.77 Aligned_cols=84 Identities=18% Similarity=0.243 Sum_probs=46.6
Q ss_pred eEEEeecCCcchHHHHHHHHHHHhcC--CCCceEEecccccccccchhcccCCCCC--Ccc-cccccch-hHH------H
Q 003094 562 ASFIFSGPTGVGKSELAKALAAYYFG--SEEAMIRLDMSEFMERHTVSKLIGSPPG--YVG-YTEGGQL-TEA------V 629 (848)
Q Consensus 562 ~~lLl~Gp~GtGKT~lA~~la~~l~~--~~~~~i~i~~~~~~~~~~~~~l~g~~~g--~~g-~~~~~~l-~~~------~ 629 (848)
+.++++||||+|||+|+-.++..... .+..++.+|...-....... -+|.... ++- ......+ .+. +
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~-~lGvd~d~llv~~~~~~E~~~l~i~~~l~~i 107 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLR-SMGVDPERVIHTPVQSLEQLRIDMVNQLDAI 107 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHH-HTTCCGGGEEEEECSBHHHHHHHHHHHHHTC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHH-HhCCCHHHeEEEcCCCHHHHHHHHHHHHHHh
Confidence 34799999999999998776655432 25567777765432221111 1222111 000 0111122 222 3
Q ss_pred HcCCCeEEEEcCCCcCC
Q 003094 630 RRRPYTVVLFDEIEKAH 646 (848)
Q Consensus 630 ~~~~~~Vl~lDEid~l~ 646 (848)
+...+.+|++|-|..+.
T Consensus 108 ~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 108 ERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp CTTCCEEEEEECSTTCB
T ss_pred hccCceEEEEecccccc
Confidence 45567899999999884
No 326
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.40 E-value=0.021 Score=58.10 Aligned_cols=35 Identities=20% Similarity=0.270 Sum_probs=25.4
Q ss_pred EEEeecCCcchHHHHHHHHHHHhcCCCCceEEecc
Q 003094 563 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDM 597 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~ 597 (848)
.++++||||+|||+++..++......+.+.+.++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 47899999999999998887655333445555443
No 327
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.39 E-value=0.011 Score=62.28 Aligned_cols=23 Identities=35% Similarity=0.495 Sum_probs=21.0
Q ss_pred CcEEECCCCCcHHHHHHHHHHHh
Q 003094 220 NPCLIGEPGVGKTAIAEGLAQRI 242 (848)
Q Consensus 220 ~iLL~GppGtGKT~la~~la~~l 242 (848)
-++|.||+|+|||+++..||+.+
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTT
T ss_pred EEEEECCCcCCHHHHHHHHHHhC
Confidence 46789999999999999999987
No 328
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.37 E-value=0.01 Score=58.72 Aligned_cols=23 Identities=35% Similarity=0.544 Sum_probs=21.6
Q ss_pred EEEeecCCcchHHHHHHHHHHHh
Q 003094 563 SFIFSGPTGVGKSELAKALAAYY 585 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l 585 (848)
.++|.|++|+||||+|+.|++.+
T Consensus 20 ~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999987
No 329
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.36 E-value=0.019 Score=62.71 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=21.3
Q ss_pred CcEEECCCCCcHHHHHHHHHHHh
Q 003094 220 NPCLIGEPGVGKTAIAEGLAQRI 242 (848)
Q Consensus 220 ~iLL~GppGtGKT~la~~la~~l 242 (848)
-++|.||+|+|||+++..||+.+
T Consensus 4 ~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHH
T ss_pred EEEEECcchhhHHHHHHHHHHHC
Confidence 46789999999999999999998
No 330
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.35 E-value=0.014 Score=57.31 Aligned_cols=99 Identities=16% Similarity=0.153 Sum_probs=51.9
Q ss_pred cEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCC--------cccc--cccccchHHHHHHHHHHHHHhCCC
Q 003094 221 PCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMG--------LLVA--GTKYRGEFEERLKKLMEEIKQSDE 290 (848)
Q Consensus 221 iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~--------~l~~--~~~~~g~~~~~l~~l~~~~~~~~~ 290 (848)
.+++||.|+||||.+..++++.... +.+++.+... .+.+ |.............+++.+.. ..
T Consensus 11 ~v~~G~mgsGKTT~ll~~a~r~~~~-------g~kV~v~k~~~d~r~~~~~i~s~~g~~~~a~~~~~~~~i~~~~~~-~~ 82 (191)
T 1xx6_A 11 EVIVGPMYSGKSEELIRRIRRAKIA-------KQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKNSREILKYFEE-DT 82 (191)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHT-------TCCEEEEEEC-------CEEECTTSCEEECEEESSSTHHHHHCCT-TC
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHC-------CCEEEEEEeccCccchHHHHHhhcCCceeeEeeCCHHHHHHHHhc-cC
Confidence 4688999999999998888887532 2333333200 0000 000000000001133433332 22
Q ss_pred eEEEEcccchhhhCCCCCchHHHHHHHhhhhcCCceEEEEeeChHH
Q 003094 291 IILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATTLDE 336 (848)
Q Consensus 291 ~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~atn~~~ 336 (848)
-+|+|||++.+. .+..+.+..+.+. ++.||.++-..+
T Consensus 83 dvViIDEaqfl~--------~~~v~~l~~l~~~-~~~Vi~~Gl~~d 119 (191)
T 1xx6_A 83 EVIAIDEVQFFD--------DEIVEIVNKIAES-GRRVICAGLDMD 119 (191)
T ss_dssp SEEEECSGGGSC--------THHHHHHHHHHHT-TCEEEEEECSBC
T ss_pred CEEEEECCCCCC--------HHHHHHHHHHHhC-CCEEEEEecccc
Confidence 389999999873 2245666665554 567777765443
No 331
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.35 E-value=0.0083 Score=58.49 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=23.2
Q ss_pred CCcEEECCCCCcHHHHHHHHHHHhhC
Q 003094 219 NNPCLIGEPGVGKTAIAEGLAQRIAS 244 (848)
Q Consensus 219 ~~iLL~GppGtGKT~la~~la~~l~~ 244 (848)
..++|.|+||+||||+++.|++.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45789999999999999999998853
No 332
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.35 E-value=0.012 Score=59.62 Aligned_cols=25 Identities=36% Similarity=0.559 Sum_probs=23.1
Q ss_pred CCCcEEECCCCCcHHHHHHHHHHHh
Q 003094 218 KNNPCLIGEPGVGKTAIAEGLAQRI 242 (848)
Q Consensus 218 ~~~iLL~GppGtGKT~la~~la~~l 242 (848)
+.+|+|.|+||+||||+++.|++.+
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999999998
No 333
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.34 E-value=0.0087 Score=59.17 Aligned_cols=28 Identities=32% Similarity=0.542 Sum_probs=23.5
Q ss_pred cCCCCCcEEECCCCCcHHHHHHHHHHHh
Q 003094 215 RRTKNNPCLIGEPGVGKTAIAEGLAQRI 242 (848)
Q Consensus 215 ~~~~~~iLL~GppGtGKT~la~~la~~l 242 (848)
.+.+..++|+||+|+||||+++.|+..+
T Consensus 26 ~~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 26 GEPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 3455678899999999999999999987
No 334
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.33 E-value=0.057 Score=60.49 Aligned_cols=47 Identities=30% Similarity=0.355 Sum_probs=31.9
Q ss_pred HHHHhcc-CCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeC
Q 003094 209 VVQILGR-RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDM 261 (848)
Q Consensus 209 l~~~l~~-~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~ 261 (848)
|-.+++. ++..-++|.|+||+|||+++..+|...... .+.+++++++
T Consensus 190 LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~------~g~~vl~~sl 237 (444)
T 2q6t_A 190 LDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALK------EGVGVGIYSL 237 (444)
T ss_dssp HHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHT------TCCCEEEEES
T ss_pred hhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh------CCCeEEEEEC
Confidence 3444432 333446789999999999999999877532 1345666665
No 335
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.32 E-value=0.0068 Score=61.25 Aligned_cols=25 Identities=20% Similarity=0.512 Sum_probs=22.8
Q ss_pred CCCcEEECCCCCcHHHHHHHHHHHh
Q 003094 218 KNNPCLIGEPGVGKTAIAEGLAQRI 242 (848)
Q Consensus 218 ~~~iLL~GppGtGKT~la~~la~~l 242 (848)
+..++|.|+||+||||+++.|++.+
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4568999999999999999999987
No 336
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.31 E-value=0.0064 Score=60.85 Aligned_cols=23 Identities=35% Similarity=0.627 Sum_probs=21.4
Q ss_pred CcEEECCCCCcHHHHHHHHHHHh
Q 003094 220 NPCLIGEPGVGKTAIAEGLAQRI 242 (848)
Q Consensus 220 ~iLL~GppGtGKT~la~~la~~l 242 (848)
+++|+||||+||||+++.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999987
No 337
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.31 E-value=0.022 Score=58.91 Aligned_cols=26 Identities=35% Similarity=0.498 Sum_probs=22.8
Q ss_pred CCCcEEECCCCCcHHHHHHHHHHHhh
Q 003094 218 KNNPCLIGEPGVGKTAIAEGLAQRIA 243 (848)
Q Consensus 218 ~~~iLL~GppGtGKT~la~~la~~l~ 243 (848)
+..|+|+|+||+||||+++.|++.+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 34578999999999999999999864
No 338
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.30 E-value=0.011 Score=57.98 Aligned_cols=23 Identities=22% Similarity=0.410 Sum_probs=21.6
Q ss_pred EEEeecCCcchHHHHHHHHHHHh
Q 003094 563 SFIFSGPTGVGKSELAKALAAYY 585 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l 585 (848)
.++|.|+||+||||+++.|++.+
T Consensus 11 ~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 11 IIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999987
No 339
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.30 E-value=0.011 Score=56.44 Aligned_cols=27 Identities=19% Similarity=0.185 Sum_probs=23.5
Q ss_pred EEeecCCcchHHHHHHHHHHHhcCCCCceE
Q 003094 564 FIFSGPTGVGKSELAKALAAYYFGSEEAMI 593 (848)
Q Consensus 564 lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i 593 (848)
++|.|++|+|||++|+.|++.+ +.+++
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~l---~~~~i 29 (168)
T 2pt5_A 3 IYLIGFMCSGKSTVGSLLSRSL---NIPFY 29 (168)
T ss_dssp EEEESCTTSCHHHHHHHHHHHH---TCCEE
T ss_pred EEEECCCCCCHHHHHHHHHHHh---CCCEE
Confidence 7899999999999999999987 44554
No 340
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.28 E-value=0.0073 Score=60.40 Aligned_cols=23 Identities=39% Similarity=0.637 Sum_probs=21.4
Q ss_pred CcEEECCCCCcHHHHHHHHHHHh
Q 003094 220 NPCLIGEPGVGKTAIAEGLAQRI 242 (848)
Q Consensus 220 ~iLL~GppGtGKT~la~~la~~l 242 (848)
.|+|.||||+||||+++.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999988
No 341
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.28 E-value=0.0079 Score=59.13 Aligned_cols=25 Identities=32% Similarity=0.478 Sum_probs=22.8
Q ss_pred CCCcEEECCCCCcHHHHHHHHHHHh
Q 003094 218 KNNPCLIGEPGVGKTAIAEGLAQRI 242 (848)
Q Consensus 218 ~~~iLL~GppGtGKT~la~~la~~l 242 (848)
+..++|.|+||+||||+++.|++.+
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3568899999999999999999988
No 342
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.28 E-value=0.012 Score=57.19 Aligned_cols=24 Identities=38% Similarity=0.612 Sum_probs=22.0
Q ss_pred CCcEEECCCCCcHHHHHHHHHHHh
Q 003094 219 NNPCLIGEPGVGKTAIAEGLAQRI 242 (848)
Q Consensus 219 ~~iLL~GppGtGKT~la~~la~~l 242 (848)
..++|+|+||+||||+++.|++.+
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999999999987
No 343
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.24 E-value=0.042 Score=56.78 Aligned_cols=29 Identities=21% Similarity=0.300 Sum_probs=24.6
Q ss_pred cCCCCCcEEECCCCCcHHHHHHHHHHHhh
Q 003094 215 RRTKNNPCLIGEPGVGKTAIAEGLAQRIA 243 (848)
Q Consensus 215 ~~~~~~iLL~GppGtGKT~la~~la~~l~ 243 (848)
..+...++|+||+|+||||+++.++..+.
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~~ 50 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYIN 50 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhCC
Confidence 44555678999999999999999998874
No 344
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.24 E-value=0.0088 Score=57.07 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=21.6
Q ss_pred CcEEECCCCCcHHHHHHHHHHHh
Q 003094 220 NPCLIGEPGVGKTAIAEGLAQRI 242 (848)
Q Consensus 220 ~iLL~GppGtGKT~la~~la~~l 242 (848)
.|+|.|+||+||||+++.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999988
No 345
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.24 E-value=0.0098 Score=59.84 Aligned_cols=26 Identities=19% Similarity=0.267 Sum_probs=23.6
Q ss_pred CCCCcEEECCCCCcHHHHHHHHHHHh
Q 003094 217 TKNNPCLIGEPGVGKTAIAEGLAQRI 242 (848)
Q Consensus 217 ~~~~iLL~GppGtGKT~la~~la~~l 242 (848)
.+..|+|.||||+||||+++.|++.+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34678999999999999999999988
No 346
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.23 E-value=0.021 Score=62.24 Aligned_cols=35 Identities=34% Similarity=0.550 Sum_probs=27.2
Q ss_pred EEEeecCCcchHHHHHHHHHHHhcCCCCceEEeccccc
Q 003094 563 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEF 600 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~ 600 (848)
.+++.||+|+|||++|..||+.+ +..++..|...+
T Consensus 4 ~i~i~GptgsGKttla~~La~~~---~~~iis~Ds~Qv 38 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQKF---NGEVINSDSMQV 38 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHH---TEEEEECCTTTT
T ss_pred EEEEECcchhhHHHHHHHHHHHC---CCeEeecCccce
Confidence 47899999999999999999987 344555554333
No 347
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.22 E-value=0.032 Score=58.67 Aligned_cols=79 Identities=14% Similarity=0.197 Sum_probs=47.3
Q ss_pred CcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCcccc-------ccc-------ccchHHHHHHHHHHH-
Q 003094 220 NPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVA-------GTK-------YRGEFEERLKKLMEE- 284 (848)
Q Consensus 220 ~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~-------~~~-------~~g~~~~~l~~l~~~- 284 (848)
-++|+||||+|||+++..++....... .+..+++++...-.. |.. .....+...-.+.+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g-----~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l 104 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQY-----PDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQL 104 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHC-----TTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcC-----CCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence 367899999999999888877664310 145677887643221 000 001122220222233
Q ss_pred --HHhCCCeEEEEcccchhhh
Q 003094 285 --IKQSDEIILFIDEVHTLIG 303 (848)
Q Consensus 285 --~~~~~~~IL~IDEid~l~~ 303 (848)
+++..+.+++||=+..+.+
T Consensus 105 ~~i~~~~~~lvVIDSI~aL~~ 125 (333)
T 3io5_A 105 DAIERGEKVVVFIDSLGNLAS 125 (333)
T ss_dssp HTCCTTCCEEEEEECSTTCBC
T ss_pred HHhhccCceEEEEeccccccc
Confidence 3556789999999999974
No 348
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.22 E-value=0.0092 Score=57.05 Aligned_cols=22 Identities=41% Similarity=0.551 Sum_probs=19.5
Q ss_pred EEEeecCCcchHHHHHHHHHHHh
Q 003094 563 SFIFSGPTGVGKSELAKALAAYY 585 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l 585 (848)
.++|.||||+||||+|+.| +.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHT
T ss_pred EEEEECCCCCCHHHHHHHH-HHC
Confidence 3789999999999999999 654
No 349
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.21 E-value=0.0096 Score=57.87 Aligned_cols=23 Identities=43% Similarity=0.653 Sum_probs=21.4
Q ss_pred EEEeecCCcchHHHHHHHHHHHh
Q 003094 563 SFIFSGPTGVGKSELAKALAAYY 585 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l 585 (848)
.++|.|+||+||||+++.|++.+
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999887
No 350
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.21 E-value=0.01 Score=57.94 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=21.4
Q ss_pred EEEeecCCcchHHHHHHHHHHHh
Q 003094 563 SFIFSGPTGVGKSELAKALAAYY 585 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l 585 (848)
.++|.|+||+||||+|+.|++.+
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999987
No 351
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.20 E-value=0.0081 Score=57.93 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=20.4
Q ss_pred CCcEEECCCCCcHHHHHHHHHHH
Q 003094 219 NNPCLIGEPGVGKTAIAEGLAQR 241 (848)
Q Consensus 219 ~~iLL~GppGtGKT~la~~la~~ 241 (848)
..++|.|+||+||||+++.|++.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~ 25 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHhh
Confidence 35789999999999999999983
No 352
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.19 E-value=0.0091 Score=59.04 Aligned_cols=30 Identities=23% Similarity=0.214 Sum_probs=25.4
Q ss_pred ccCCCCCcEEECCCCCcHHHHHHHHHHHhh
Q 003094 214 GRRTKNNPCLIGEPGVGKTAIAEGLAQRIA 243 (848)
Q Consensus 214 ~~~~~~~iLL~GppGtGKT~la~~la~~l~ 243 (848)
....+..+.|+||+|+||||+++.|+..+.
T Consensus 21 ~~~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 21 LDQKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp HTSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 334556678999999999999999999885
No 353
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.19 E-value=0.014 Score=58.07 Aligned_cols=23 Identities=35% Similarity=0.527 Sum_probs=21.3
Q ss_pred CcEEECCCCCcHHHHHHHHHHHh
Q 003094 220 NPCLIGEPGVGKTAIAEGLAQRI 242 (848)
Q Consensus 220 ~iLL~GppGtGKT~la~~la~~l 242 (848)
.++|.||||+||+|.|+.|++.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 36889999999999999999988
No 354
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.18 E-value=0.0085 Score=59.24 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=22.3
Q ss_pred CCCcEEECCCCCcHHHHHHHHHHHh
Q 003094 218 KNNPCLIGEPGVGKTAIAEGLAQRI 242 (848)
Q Consensus 218 ~~~iLL~GppGtGKT~la~~la~~l 242 (848)
+..|+|.|+||+||||+++.|++.+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3457899999999999999999987
No 355
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.18 E-value=0.0077 Score=58.35 Aligned_cols=26 Identities=35% Similarity=0.391 Sum_probs=18.9
Q ss_pred CCCcEEECCCCCcHHHHHHHHHHHhh
Q 003094 218 KNNPCLIGEPGVGKTAIAEGLAQRIA 243 (848)
Q Consensus 218 ~~~iLL~GppGtGKT~la~~la~~l~ 243 (848)
+..++|.|+||+||||+++.|++.+.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 34678999999999999999999873
No 356
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.17 E-value=0.0089 Score=58.30 Aligned_cols=25 Identities=24% Similarity=0.454 Sum_probs=22.7
Q ss_pred CcEEECCCCCcHHHHHHHHHHHhhC
Q 003094 220 NPCLIGEPGVGKTAIAEGLAQRIAS 244 (848)
Q Consensus 220 ~iLL~GppGtGKT~la~~la~~l~~ 244 (848)
.|+|.|+||+||||+++.|++.+..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4789999999999999999999863
No 357
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.15 E-value=0.013 Score=59.46 Aligned_cols=23 Identities=35% Similarity=0.596 Sum_probs=21.8
Q ss_pred EEEeecCCcchHHHHHHHHHHHh
Q 003094 563 SFIFSGPTGVGKSELAKALAAYY 585 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l 585 (848)
.++|.|+||+||||+|+.|++.+
T Consensus 18 ~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 18 RAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999987
No 358
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.13 E-value=0.034 Score=58.08 Aligned_cols=23 Identities=43% Similarity=0.408 Sum_probs=20.7
Q ss_pred EEEeecCCcchHHHHHHHHHHHh
Q 003094 563 SFIFSGPTGVGKSELAKALAAYY 585 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l 585 (848)
.++++||+|+|||++++.++..+
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998765
No 359
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.12 E-value=0.013 Score=58.59 Aligned_cols=22 Identities=27% Similarity=0.537 Sum_probs=20.8
Q ss_pred EEeecCCcchHHHHHHHHHHHh
Q 003094 564 FIFSGPTGVGKSELAKALAAYY 585 (848)
Q Consensus 564 lLl~Gp~GtGKT~lA~~la~~l 585 (848)
++|.||||+||||+|+.|++.+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999887
No 360
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.11 E-value=0.015 Score=56.00 Aligned_cols=24 Identities=33% Similarity=0.567 Sum_probs=21.7
Q ss_pred CCcEEECCCCCcHHHHHHHHHHHh
Q 003094 219 NNPCLIGEPGVGKTAIAEGLAQRI 242 (848)
Q Consensus 219 ~~iLL~GppGtGKT~la~~la~~l 242 (848)
..++|+||+|+||||+++.|+..+
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhh
Confidence 457899999999999999999987
No 361
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.10 E-value=0.01 Score=57.48 Aligned_cols=28 Identities=29% Similarity=0.491 Sum_probs=19.9
Q ss_pred EEEeecCCcchHHHHHHHHHHHhcCCCCceE
Q 003094 563 SFIFSGPTGVGKSELAKALAAYYFGSEEAMI 593 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i 593 (848)
.++|.|+||+||||+|+.|++.+ +.+++
T Consensus 7 ~I~l~G~~GsGKST~a~~La~~l---~~~~i 34 (183)
T 2vli_A 7 IIWINGPFGVGKTHTAHTLHERL---PGSFV 34 (183)
T ss_dssp EEEEECCC----CHHHHHHHHHS---TTCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhc---CCCEE
Confidence 48899999999999999999987 44554
No 362
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.10 E-value=0.03 Score=60.08 Aligned_cols=99 Identities=12% Similarity=0.122 Sum_probs=54.1
Q ss_pred CCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCc-cccc--cc---ccchHHHHHHHHHHHHHhCC
Q 003094 216 RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGL-LVAG--TK---YRGEFEERLKKLMEEIKQSD 289 (848)
Q Consensus 216 ~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~-l~~~--~~---~~g~~~~~l~~l~~~~~~~~ 289 (848)
.....++|+||+|+||||+++.|+..+... ...+.++... +... .. +......+.+..+..+-...
T Consensus 169 ~~g~~v~i~G~~GsGKTTll~~l~g~~~~~--------~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~ 240 (330)
T 2pt7_A 169 AIGKNVIVCGGTGSGKTTYIKSIMEFIPKE--------ERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMR 240 (330)
T ss_dssp HHTCCEEEEESTTSCHHHHHHHGGGGSCTT--------SCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCcCC--------CcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhC
Confidence 345789999999999999999999876421 1123333211 1000 00 11000112344455555567
Q ss_pred CeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCCceEEEEeeC
Q 003094 290 EIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATT 333 (848)
Q Consensus 290 ~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~atn 333 (848)
|-+|++||.-. .++.+.|..+. .++..+|.++.
T Consensus 241 p~ilildE~~~----------~e~~~~l~~~~-~g~~tvi~t~H 273 (330)
T 2pt7_A 241 PDRIILGELRS----------SEAYDFYNVLC-SGHKGTLTTLH 273 (330)
T ss_dssp CSEEEECCCCS----------THHHHHHHHHH-TTCCCEEEEEE
T ss_pred CCEEEEcCCCh----------HHHHHHHHHHh-cCCCEEEEEEc
Confidence 88999999864 12455554443 44443454543
No 363
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.10 E-value=0.012 Score=58.91 Aligned_cols=22 Identities=23% Similarity=0.531 Sum_probs=20.7
Q ss_pred EEeecCCcchHHHHHHHHHHHh
Q 003094 564 FIFSGPTGVGKSELAKALAAYY 585 (848)
Q Consensus 564 lLl~Gp~GtGKT~lA~~la~~l 585 (848)
++|.||||+||||+|+.|++.+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999886
No 364
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.08 E-value=0.011 Score=57.85 Aligned_cols=35 Identities=29% Similarity=0.460 Sum_probs=27.0
Q ss_pred EEEeecCCcchHHHHHHHHHHHhcCCCCceEEeccccc
Q 003094 563 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEF 600 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~ 600 (848)
.+.|.||+|+||||+++.|+..+ +...+.++...+
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~~---~~g~i~i~~d~~ 45 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANLP---GVPKVHFHSDDL 45 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTCS---SSCEEEECTTHH
T ss_pred EEEEECCCCCCHHHHHHHHHhcc---CCCeEEEcccch
Confidence 48899999999999999999763 345566665443
No 365
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.05 E-value=0.012 Score=58.25 Aligned_cols=26 Identities=19% Similarity=0.314 Sum_probs=22.8
Q ss_pred CCCCcEEECCCCCcHHHHHHHHHHHh
Q 003094 217 TKNNPCLIGEPGVGKTAIAEGLAQRI 242 (848)
Q Consensus 217 ~~~~iLL~GppGtGKT~la~~la~~l 242 (848)
.+..++|+||||+||||+++.|++.+
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34567899999999999999999987
No 366
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.05 E-value=0.012 Score=57.88 Aligned_cols=23 Identities=26% Similarity=0.432 Sum_probs=21.6
Q ss_pred EEEeecCCcchHHHHHHHHHHHh
Q 003094 563 SFIFSGPTGVGKSELAKALAAYY 585 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l 585 (848)
.++|.|+||+||||+|+.|++.+
T Consensus 14 ~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999987
No 367
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.04 E-value=0.034 Score=60.64 Aligned_cols=23 Identities=39% Similarity=0.670 Sum_probs=21.5
Q ss_pred EEEeecCCcchHHHHHHHHHHHh
Q 003094 563 SFIFSGPTGVGKSELAKALAAYY 585 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l 585 (848)
.++|+||+|+|||+++++|+..+
T Consensus 171 ~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 171 YWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 58899999999999999999876
No 368
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.01 E-value=0.016 Score=57.32 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=21.4
Q ss_pred EEEeecCCcchHHHHHHHHHHHh
Q 003094 563 SFIFSGPTGVGKSELAKALAAYY 585 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l 585 (848)
.++|.|++|+|||++++.|++.+
T Consensus 17 ~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999999886
No 369
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.00 E-value=0.017 Score=56.98 Aligned_cols=39 Identities=28% Similarity=0.335 Sum_probs=27.9
Q ss_pred eEEEeecCCcchHHHHHHHHHHHhcCCCCceEEeccccc
Q 003094 562 ASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEF 600 (848)
Q Consensus 562 ~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~ 600 (848)
..+.|.||+|+||||+++.|+..+...+...+.+|...+
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 357899999999999999999988522333235554433
No 370
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.00 E-value=0.021 Score=57.95 Aligned_cols=37 Identities=19% Similarity=0.170 Sum_probs=27.3
Q ss_pred EEEeecCCcchHHHHHHHHHHHhcC------CCCceEEecccc
Q 003094 563 SFIFSGPTGVGKSELAKALAAYYFG------SEEAMIRLDMSE 599 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l~~------~~~~~i~i~~~~ 599 (848)
.++|+||||+|||++++.++..... .+...+.++...
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred EEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 4789999999999999999985311 134566666544
No 371
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.00 E-value=0.036 Score=56.61 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=21.5
Q ss_pred EEEeecCCcchHHHHHHHHHHHh
Q 003094 563 SFIFSGPTGVGKSELAKALAAYY 585 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l 585 (848)
.++|.||||+||||+|+.|++.+
T Consensus 31 ~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 31 RYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999887
No 372
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.98 E-value=0.12 Score=54.28 Aligned_cols=41 Identities=24% Similarity=0.253 Sum_probs=30.4
Q ss_pred CCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCc
Q 003094 217 TKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGL 263 (848)
Q Consensus 217 ~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~ 263 (848)
.+..++|+||+|+||||++..||..+... .|.++..++...
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~------~G~~V~lv~~D~ 144 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLE------KHKKIAFITTDT 144 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHT------TCCCEEEEECCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHh------cCCEEEEEecCc
Confidence 34567899999999999999999988521 145566666543
No 373
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.98 E-value=0.049 Score=57.20 Aligned_cols=24 Identities=33% Similarity=0.432 Sum_probs=21.5
Q ss_pred CCcEEECCCCCcHHHHHHHHHHHh
Q 003094 219 NNPCLIGEPGVGKTAIAEGLAQRI 242 (848)
Q Consensus 219 ~~iLL~GppGtGKT~la~~la~~l 242 (848)
.-++|+||+|+|||+++..||+.+
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCccCHHHHHHHHHHhC
Confidence 346789999999999999999987
No 374
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.97 E-value=0.014 Score=58.58 Aligned_cols=25 Identities=32% Similarity=0.525 Sum_probs=22.0
Q ss_pred CCCcEEECCCCCcHHHHHHHHHHHh
Q 003094 218 KNNPCLIGEPGVGKTAIAEGLAQRI 242 (848)
Q Consensus 218 ~~~iLL~GppGtGKT~la~~la~~l 242 (848)
++-|+|.||||+||+|.|+.|++.+
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3446788999999999999999988
No 375
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.95 E-value=0.014 Score=58.58 Aligned_cols=23 Identities=26% Similarity=0.504 Sum_probs=21.7
Q ss_pred EEEeecCCcchHHHHHHHHHHHh
Q 003094 563 SFIFSGPTGVGKSELAKALAAYY 585 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l 585 (848)
.++|.|+||+||||+|+.|++.+
T Consensus 7 ~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 7 NLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999987
No 376
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.92 E-value=0.014 Score=56.98 Aligned_cols=23 Identities=17% Similarity=0.316 Sum_probs=21.5
Q ss_pred EEEeecCCcchHHHHHHHHHHHh
Q 003094 563 SFIFSGPTGVGKSELAKALAAYY 585 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l 585 (848)
.++|.|+||+||||+++.|++.+
T Consensus 8 ~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999987
No 377
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.91 E-value=0.0089 Score=61.61 Aligned_cols=26 Identities=27% Similarity=0.252 Sum_probs=22.7
Q ss_pred CCCcEEECCCCCcHHHHHHHHHHHhh
Q 003094 218 KNNPCLIGEPGVGKTAIAEGLAQRIA 243 (848)
Q Consensus 218 ~~~iLL~GppGtGKT~la~~la~~l~ 243 (848)
+..++|+|+||+||||+++.|++.+.
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 34578999999999999999999873
No 378
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.88 E-value=0.011 Score=62.05 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=22.0
Q ss_pred CCCcEEECCCCCcHHHHHHHHHHHh
Q 003094 218 KNNPCLIGEPGVGKTAIAEGLAQRI 242 (848)
Q Consensus 218 ~~~iLL~GppGtGKT~la~~la~~l 242 (848)
+..++|+||||+||||+++.|++.+
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3457889999999999999999987
No 379
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.88 E-value=0.17 Score=54.06 Aligned_cols=26 Identities=27% Similarity=0.358 Sum_probs=22.8
Q ss_pred ceEEEeecCCcchHHHHHHHHHHHhc
Q 003094 561 IASFIFSGPTGVGKSELAKALAAYYF 586 (848)
Q Consensus 561 ~~~lLl~Gp~GtGKT~lA~~la~~l~ 586 (848)
...+.|.||+|+||||+++.|+..+.
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag~l~ 154 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLANWLK 154 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34688999999999999999998874
No 380
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.88 E-value=0.012 Score=59.35 Aligned_cols=23 Identities=17% Similarity=0.468 Sum_probs=21.5
Q ss_pred EEEeecCCcchHHHHHHHHHHHh
Q 003094 563 SFIFSGPTGVGKSELAKALAAYY 585 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l 585 (848)
.++|.|+||+||||+++.|++.+
T Consensus 9 ~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 9 RAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999986
No 381
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.88 E-value=0.017 Score=57.39 Aligned_cols=40 Identities=28% Similarity=0.462 Sum_probs=29.3
Q ss_pred HHHHHHHHHhccC--CCCCcEEECCCCCcHHHHHHHHHHHhh
Q 003094 204 PQIERVVQILGRR--TKNNPCLIGEPGVGKTAIAEGLAQRIA 243 (848)
Q Consensus 204 ~~~~~l~~~l~~~--~~~~iLL~GppGtGKT~la~~la~~l~ 243 (848)
+.+++|.+.+... ...-+.|.||+|+||||+++.|+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3455565555432 333456999999999999999999885
No 382
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.85 E-value=0.049 Score=57.62 Aligned_cols=38 Identities=26% Similarity=0.314 Sum_probs=28.6
Q ss_pred CCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCC
Q 003094 218 KNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMG 262 (848)
Q Consensus 218 ~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~ 262 (848)
+.-++|+||+|+||||++..||..+... +.++..++..
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~-------g~kV~lv~~D 141 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVDE-------GKSVVLAAAD 141 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHT-------TCCEEEEEEC
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHhc-------CCEEEEEccc
Confidence 3446799999999999999999988542 4456655543
No 383
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.85 E-value=0.01 Score=59.32 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=21.6
Q ss_pred CcEEECCCCCcHHHHHHHHHHHh
Q 003094 220 NPCLIGEPGVGKTAIAEGLAQRI 242 (848)
Q Consensus 220 ~iLL~GppGtGKT~la~~la~~l 242 (848)
+++|.|+||+||||+++.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999988
No 384
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.82 E-value=0.014 Score=60.45 Aligned_cols=37 Identities=32% Similarity=0.388 Sum_probs=28.1
Q ss_pred EEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccc
Q 003094 563 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSE 599 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~ 599 (848)
.++|.|+||+|||++|+.|++.+...+.+++.++...
T Consensus 6 lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~ 42 (260)
T 3a4m_A 6 LIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDL 42 (260)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchH
Confidence 4889999999999999999998533355565455443
No 385
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.78 E-value=0.017 Score=57.66 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=21.0
Q ss_pred EEeecCCcchHHHHHHHHHHHh
Q 003094 564 FIFSGPTGVGKSELAKALAAYY 585 (848)
Q Consensus 564 lLl~Gp~GtGKT~lA~~la~~l 585 (848)
++|.|+||+||||+|+.|++.+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999987
No 386
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.77 E-value=0.012 Score=59.18 Aligned_cols=23 Identities=22% Similarity=0.437 Sum_probs=21.6
Q ss_pred EEEeecCCcchHHHHHHHHHHHh
Q 003094 563 SFIFSGPTGVGKSELAKALAAYY 585 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l 585 (848)
.++|.||||+||||+++.|++.+
T Consensus 7 ~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 7 KVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999999987
No 387
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.76 E-value=0.027 Score=59.25 Aligned_cols=34 Identities=29% Similarity=0.360 Sum_probs=26.4
Q ss_pred EEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccc
Q 003094 563 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSE 599 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~ 599 (848)
.+++.||+|+|||++|..||+.+ +..++..|...
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~---~~~iis~Ds~Q 38 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRL---NGEVISGDSMQ 38 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTT---TEEEEECCGGG
T ss_pred EEEEECCCcCCHHHHHHHHHHhC---ccceeecCccc
Confidence 37889999999999999999976 44555555443
No 388
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.76 E-value=0.025 Score=55.05 Aligned_cols=37 Identities=24% Similarity=0.245 Sum_probs=28.3
Q ss_pred eEEEeecCCcchHHHHHHHHHHHhcCCCCceEEeccc
Q 003094 562 ASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMS 598 (848)
Q Consensus 562 ~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~ 598 (848)
..++|.|++|+|||++++.|+..+...+..+..+|..
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d 50 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGD 50 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHH
Confidence 3588999999999999999999885444445555543
No 389
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.75 E-value=0.02 Score=56.90 Aligned_cols=32 Identities=31% Similarity=0.608 Sum_probs=25.9
Q ss_pred EEeecCCcchHHHHHHHHHHHhcCCCCceEEeccccc
Q 003094 564 FIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEF 600 (848)
Q Consensus 564 lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~ 600 (848)
++|.||||+||+|.|+.|++.+ .+..+..+++
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~-----g~~~istGdl 34 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEK-----GFVHISTGDI 34 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH-----CCEEEEHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH-----CCeEEcHHHH
Confidence 7899999999999999999987 3455555544
No 390
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.73 E-value=0.012 Score=57.54 Aligned_cols=26 Identities=46% Similarity=0.540 Sum_probs=22.0
Q ss_pred CCCCcEEECCCCCcHHHHHHHHHHHh
Q 003094 217 TKNNPCLIGEPGVGKTAIAEGLAQRI 242 (848)
Q Consensus 217 ~~~~iLL~GppGtGKT~la~~la~~l 242 (848)
....++|+||||+||||+++.|+...
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcc
Confidence 34567899999999999999998753
No 391
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.73 E-value=0.016 Score=56.16 Aligned_cols=25 Identities=28% Similarity=0.494 Sum_probs=21.8
Q ss_pred CCcEEECCCCCcHHHHHHHHHHHhh
Q 003094 219 NNPCLIGEPGVGKTAIAEGLAQRIA 243 (848)
Q Consensus 219 ~~iLL~GppGtGKT~la~~la~~l~ 243 (848)
.-++|+||+|+||||+++.|+..+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4567999999999999999998763
No 392
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.72 E-value=0.13 Score=58.19 Aligned_cols=37 Identities=27% Similarity=0.266 Sum_probs=28.2
Q ss_pred CCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeC
Q 003094 218 KNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDM 261 (848)
Q Consensus 218 ~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~ 261 (848)
+..++|+|++|+||||++..||..+... +.++..+++
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~-------G~kVllVd~ 137 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRK-------GWKTCLICA 137 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHT-------TCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC-------CCeEEEEec
Confidence 3457899999999999999999888642 445655555
No 393
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.72 E-value=0.022 Score=55.53 Aligned_cols=25 Identities=28% Similarity=0.279 Sum_probs=22.2
Q ss_pred CcEEECCCCCcHHHHHHHHHHHhhC
Q 003094 220 NPCLIGEPGVGKTAIAEGLAQRIAS 244 (848)
Q Consensus 220 ~iLL~GppGtGKT~la~~la~~l~~ 244 (848)
.++|.|++|+||||+++.|++.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQ 26 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3679999999999999999998853
No 394
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.69 E-value=0.018 Score=57.69 Aligned_cols=33 Identities=18% Similarity=0.337 Sum_probs=26.2
Q ss_pred EEEeecCCcchHHHHHHHHHHHhcCCCCceEEeccccc
Q 003094 563 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEF 600 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~ 600 (848)
.++|.||||+||+|.|+.|++.+ .+..+...++
T Consensus 31 iI~llGpPGsGKgTqa~~L~~~~-----g~~hIstGdl 63 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLVQKF-----HFNHLSSGDL 63 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHH-----CCEEECHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-----CCceEcHHHH
Confidence 47789999999999999999987 3555555544
No 395
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.67 E-value=0.016 Score=57.43 Aligned_cols=25 Identities=28% Similarity=0.217 Sum_probs=22.6
Q ss_pred CCcEEECCCCCcHHHHHHHHHHHhh
Q 003094 219 NNPCLIGEPGVGKTAIAEGLAQRIA 243 (848)
Q Consensus 219 ~~iLL~GppGtGKT~la~~la~~l~ 243 (848)
..|+|.|+||+||||+++.|++.+.
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 3578999999999999999999985
No 396
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.67 E-value=0.022 Score=55.08 Aligned_cols=36 Identities=31% Similarity=0.414 Sum_probs=27.8
Q ss_pred CCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEe
Q 003094 218 KNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLD 260 (848)
Q Consensus 218 ~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~ 260 (848)
...++|+|++|+||||+++.|+..+... +.+++.++
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~~-------g~~~i~~d 40 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVCH-------GIPCYTLD 40 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHT-------TCCEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhC-------CCcEEEEC
Confidence 4457899999999999999999987431 44566665
No 397
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.67 E-value=0.017 Score=61.26 Aligned_cols=32 Identities=38% Similarity=0.568 Sum_probs=26.4
Q ss_pred EEEeecCCcchHHHHHHHHHHHhcCCCCceEEecc
Q 003094 563 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDM 597 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~ 597 (848)
.++++||+|+|||++|+.||+.+ +..++..|.
T Consensus 7 ~i~i~GptGsGKTtla~~La~~l---~~~iis~Ds 38 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADAL---PCELISVDS 38 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS---CEEEEEECT
T ss_pred EEEEECCCCCCHHHHHHHHHHHc---CCcEEeccc
Confidence 48899999999999999999987 455655553
No 398
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.66 E-value=0.018 Score=56.09 Aligned_cols=33 Identities=27% Similarity=0.291 Sum_probs=25.8
Q ss_pred EEeecCCcchHHHHHHHHHHHhcCCCCceEEec
Q 003094 564 FIFSGPTGVGKSELAKALAAYYFGSEEAMIRLD 596 (848)
Q Consensus 564 lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~ 596 (848)
+.|.|++|+||||+++.|++.+...+.+++..|
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 789999999999999999998733344555443
No 399
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.66 E-value=0.023 Score=54.91 Aligned_cols=36 Identities=25% Similarity=0.384 Sum_probs=28.4
Q ss_pred EEEeecCCcchHHHHHHHHHHHhcCCCCceEEeccc
Q 003094 563 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMS 598 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~ 598 (848)
.+.|.|++|+||||+++.|+..+...+.+++.+|..
T Consensus 7 ~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~ 42 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGD 42 (179)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECCh
Confidence 478999999999999999999874335567666643
No 400
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.65 E-value=0.15 Score=54.47 Aligned_cols=39 Identities=13% Similarity=0.252 Sum_probs=29.9
Q ss_pred CCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeC
Q 003094 216 RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDM 261 (848)
Q Consensus 216 ~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~ 261 (848)
.+..-++|.|+||+|||+++..+|..+.. .+.++.++++
T Consensus 44 ~~G~LiiIaG~pG~GKTt~al~ia~~~a~-------~g~~Vl~fSl 82 (338)
T 4a1f_A 44 NKGSLVIIGARPSMGKTSLMMNMVLSALN-------DDRGVAVFSL 82 (338)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHH-------TTCEEEEEES
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHH-------cCCeEEEEeC
Confidence 44445788999999999999999988754 2566777765
No 401
>1qzm_A ATP-dependent protease LA; oligomerization domain, AAA+ protein, hydrolase; 1.90A {Escherichia coli} SCOP: c.37.1.20
Probab=94.64 E-value=0.15 Score=43.20 Aligned_cols=69 Identities=25% Similarity=0.261 Sum_probs=54.9
Q ss_pred CCCCHHHHHHHHHHHHH-HHHHHHhcCCCeEeecHHHHHHHHHccCCCCCCchHHHHHHHHHHHHHHHHHH
Q 003094 738 RQLTKLEVKEIADIMLK-EVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSMAEKM 807 (848)
Q Consensus 738 ~~l~~~el~~I~~~~l~-~~~~~~~~~~~~l~i~~~a~~~l~~~~~~~~~g~r~L~~~i~~~l~~~l~~~~ 807 (848)
+.||.+|...|+..+|- +..++.......+.|+++++..|... |....|.|.|++.|..++.....+.+
T Consensus 1 sGYt~~EK~~IAk~~LiPkql~~~GL~~~~~~i~d~al~~iI~~-YTREaGVRnLer~i~~i~RK~a~~i~ 70 (94)
T 1qzm_A 1 SGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRY-YTREAGVRGLEREISKLCRKAVKQLL 70 (94)
T ss_dssp CCCCHHHHHHHHHHTHHHHHHHHTTCCTTTEEECHHHHHHHHHH-HCCCSSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhccHHHHHHhCCChhhceECHHHHHHHHHH-hcccccchHHHHHHHHHHHHHHHHHH
Confidence 35899999999977664 33333344455789999999999985 99999999999999999998777664
No 402
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.62 E-value=0.031 Score=55.17 Aligned_cols=41 Identities=20% Similarity=0.205 Sum_probs=29.5
Q ss_pred hHHHHHHHHHhccC---CCCCcEEECCCCCcHHHHHHHHHHHhh
Q 003094 203 QPQIERVVQILGRR---TKNNPCLIGEPGVGKTAIAEGLAQRIA 243 (848)
Q Consensus 203 ~~~~~~l~~~l~~~---~~~~iLL~GppGtGKT~la~~la~~l~ 243 (848)
++.++.+.+.+... .+.-+.|.|++|+||||+++.|+..+.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 4 RDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp HHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 44566666655432 223356899999999999999999874
No 403
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.61 E-value=0.024 Score=55.93 Aligned_cols=33 Identities=21% Similarity=0.353 Sum_probs=25.9
Q ss_pred EEEeecCCcchHHHHHHHHHHHhcCCCCceEEeccccc
Q 003094 563 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEF 600 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~ 600 (848)
.+.|.||+|+||||+++.|+..+ + .+.++...+
T Consensus 31 ~i~l~G~~GsGKSTl~~~L~~~~---g--~~~i~~d~~ 63 (200)
T 4eun_A 31 HVVVMGVSGSGKTTIAHGVADET---G--LEFAEADAF 63 (200)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH---C--CEEEEGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHhh---C--CeEEccccc
Confidence 47899999999999999999987 3 344554444
No 404
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.60 E-value=0.026 Score=57.92 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=23.6
Q ss_pred CCCcEEECCCCCcHHHHHHHHHHHh
Q 003094 218 KNNPCLIGEPGVGKTAIAEGLAQRI 242 (848)
Q Consensus 218 ~~~iLL~GppGtGKT~la~~la~~l 242 (848)
...+.|+|++|+||||+++.|+..+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5789999999999999999999988
No 405
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.59 E-value=0.024 Score=57.00 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=21.4
Q ss_pred CcEEECCCCCcHHHHHHHHHHHh
Q 003094 220 NPCLIGEPGVGKTAIAEGLAQRI 242 (848)
Q Consensus 220 ~iLL~GppGtGKT~la~~la~~l 242 (848)
.++|.|+||+||||+++.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999988
No 406
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.59 E-value=0.016 Score=55.88 Aligned_cols=22 Identities=32% Similarity=0.380 Sum_probs=20.1
Q ss_pred EEEeecCCcchHHHHHHHHHHH
Q 003094 563 SFIFSGPTGVGKSELAKALAAY 584 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~ 584 (848)
.++|.|+||+||||+|+.|++.
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~~ 25 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIAK 25 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHhh
Confidence 3789999999999999999983
No 407
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.58 E-value=0.069 Score=59.05 Aligned_cols=47 Identities=15% Similarity=0.197 Sum_probs=31.3
Q ss_pred CCCccCChHHHHHHHHHhccCCCCCcEEECCCCCcHHHHHHHHHHHhh
Q 003094 196 LDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIA 243 (848)
Q Consensus 196 ld~iiG~~~~~~~l~~~l~~~~~~~iLL~GppGtGKT~la~~la~~l~ 243 (848)
++++.-.......+..++ ..+...++|+||+|+||||+.++++..+.
T Consensus 146 l~~Lg~~~~~~~~L~~l~-~~~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 146 LHSLGMTAHNHDNFRRLI-KRPHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp GGGSCCCHHHHHHHHHHH-TSSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred HHHcCCCHHHHHHHHHHH-HhcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 334332333334444444 34444578999999999999999999885
No 408
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.56 E-value=0.017 Score=57.40 Aligned_cols=27 Identities=19% Similarity=0.217 Sum_probs=23.7
Q ss_pred CCCcEEECCCCCcHHHHHHHHHHHhhC
Q 003094 218 KNNPCLIGEPGVGKTAIAEGLAQRIAS 244 (848)
Q Consensus 218 ~~~iLL~GppGtGKT~la~~la~~l~~ 244 (848)
+..|+|.|+||+||||+++.|++.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 456789999999999999999998854
No 409
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.54 E-value=0.018 Score=56.65 Aligned_cols=24 Identities=21% Similarity=0.577 Sum_probs=21.9
Q ss_pred CcEEECCCCCcHHHHHHHHHHHhh
Q 003094 220 NPCLIGEPGVGKTAIAEGLAQRIA 243 (848)
Q Consensus 220 ~iLL~GppGtGKT~la~~la~~l~ 243 (848)
.++|.|++|+||||+++.|++.+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 478999999999999999999983
No 410
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.53 E-value=0.016 Score=57.51 Aligned_cols=27 Identities=15% Similarity=0.121 Sum_probs=23.4
Q ss_pred CCCcEEECCCCCcHHHHHHHHHHHhhC
Q 003094 218 KNNPCLIGEPGVGKTAIAEGLAQRIAS 244 (848)
Q Consensus 218 ~~~iLL~GppGtGKT~la~~la~~l~~ 244 (848)
+..|+|.|+||+||||+++.|++.+..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 345789999999999999999998854
No 411
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.50 E-value=0.07 Score=56.96 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=21.5
Q ss_pred CcEEECCCCCcHHHHHHHHHHHh
Q 003094 220 NPCLIGEPGVGKTAIAEGLAQRI 242 (848)
Q Consensus 220 ~iLL~GppGtGKT~la~~la~~l 242 (848)
-++|.||+|+|||+++..|++.+
T Consensus 9 lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCcCcHHHHHHHHHHHc
Confidence 46799999999999999999988
No 412
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.50 E-value=0.12 Score=55.98 Aligned_cols=39 Identities=23% Similarity=0.372 Sum_probs=28.1
Q ss_pred HHHHHHHhc--cCCCCCcEEECCCCCcHHHHHHHHHHHhhC
Q 003094 206 IERVVQILG--RRTKNNPCLIGEPGVGKTAIAEGLAQRIAS 244 (848)
Q Consensus 206 ~~~l~~~l~--~~~~~~iLL~GppGtGKT~la~~la~~l~~ 244 (848)
...+...+. .+....+.|+|+||+||||++..|+..+..
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~ 105 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIE 105 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 334444443 233445789999999999999999988754
No 413
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=94.49 E-value=0.17 Score=64.19 Aligned_cols=47 Identities=23% Similarity=0.235 Sum_probs=35.9
Q ss_pred ccccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHH
Q 003094 531 KRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAY 584 (848)
Q Consensus 531 ~~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~ 584 (848)
..++|.+..++.|.+.+... ......+.++|+.|+|||+||+.+++.
T Consensus 124 ~~~vgR~~~~~~l~~~l~~~-------~~~~~~v~i~G~gG~GKTtLa~~~~~~ 170 (1249)
T 3sfz_A 124 VIFVTRKKLVHAIQQKLWKL-------NGEPGWVTIYGMAGCGKSVLAAEAVRD 170 (1249)
T ss_dssp SSCCCCHHHHHHHHHHHHTT-------TTSCEEEEEECSTTSSHHHHHHHHTCC
T ss_pred ceeccHHHHHHHHHHHHhhc-------cCCCCEEEEEeCCCCCHHHHHHHHhcC
Confidence 45899999999888887532 112245789999999999999888754
No 414
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.47 E-value=0.02 Score=57.62 Aligned_cols=22 Identities=27% Similarity=0.572 Sum_probs=21.0
Q ss_pred EEeecCCcchHHHHHHHHHHHh
Q 003094 564 FIFSGPTGVGKSELAKALAAYY 585 (848)
Q Consensus 564 lLl~Gp~GtGKT~lA~~la~~l 585 (848)
++|.|+||+||||+++.|++.+
T Consensus 3 I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999987
No 415
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.45 E-value=0.017 Score=57.48 Aligned_cols=26 Identities=27% Similarity=0.296 Sum_probs=22.3
Q ss_pred CCCcEEECCCCCcHHHHHHHHHHHhh
Q 003094 218 KNNPCLIGEPGVGKTAIAEGLAQRIA 243 (848)
Q Consensus 218 ~~~iLL~GppGtGKT~la~~la~~l~ 243 (848)
+.-++|+||+|+||||+++.|+..+.
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 44577999999999999999998763
No 416
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.44 E-value=0.028 Score=55.63 Aligned_cols=24 Identities=33% Similarity=0.412 Sum_probs=22.0
Q ss_pred EEEeecCCcchHHHHHHHHHHHhc
Q 003094 563 SFIFSGPTGVGKSELAKALAAYYF 586 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l~ 586 (848)
.++|.|+||+||||+++.|++.+.
T Consensus 6 ~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHh
Confidence 488999999999999999999873
No 417
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.42 E-value=0.018 Score=56.83 Aligned_cols=25 Identities=20% Similarity=0.146 Sum_probs=22.4
Q ss_pred CCCcEEECCCCCcHHHHHHHHHHHh
Q 003094 218 KNNPCLIGEPGVGKTAIAEGLAQRI 242 (848)
Q Consensus 218 ~~~iLL~GppGtGKT~la~~la~~l 242 (848)
+..|+|.|++|+||||+++.|++.+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3567899999999999999999976
No 418
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.41 E-value=0.042 Score=61.18 Aligned_cols=27 Identities=37% Similarity=0.533 Sum_probs=22.8
Q ss_pred CCCCcEEECCCCCcHHHHHHHHHHHhh
Q 003094 217 TKNNPCLIGEPGVGKTAIAEGLAQRIA 243 (848)
Q Consensus 217 ~~~~iLL~GppGtGKT~la~~la~~l~ 243 (848)
....++|+||+|+|||++++.++....
T Consensus 150 kGq~~~i~G~sGvGKTtL~~~l~~~~~ 176 (473)
T 1sky_E 150 KGGKIGLFGGAGVGKTVLIQELIHNIA 176 (473)
T ss_dssp TTCEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCccHHHHHHHhhhh
Confidence 344689999999999999999988764
No 419
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.39 E-value=0.025 Score=61.78 Aligned_cols=29 Identities=21% Similarity=0.300 Sum_probs=24.9
Q ss_pred cCCCCCcEEECCCCCcHHHHHHHHHHHhh
Q 003094 215 RRTKNNPCLIGEPGVGKTAIAEGLAQRIA 243 (848)
Q Consensus 215 ~~~~~~iLL~GppGtGKT~la~~la~~l~ 243 (848)
..+...++|+||+|+||||+++.++..+.
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 44556688999999999999999999875
No 420
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.38 E-value=0.021 Score=58.34 Aligned_cols=25 Identities=28% Similarity=0.577 Sum_probs=22.9
Q ss_pred CCCcEEECCCCCcHHHHHHHHHHHh
Q 003094 218 KNNPCLIGEPGVGKTAIAEGLAQRI 242 (848)
Q Consensus 218 ~~~iLL~GppGtGKT~la~~la~~l 242 (848)
+..++|+||+|+||||+++.|++.+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4678899999999999999999987
No 421
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=94.38 E-value=0.33 Score=47.54 Aligned_cols=24 Identities=25% Similarity=0.264 Sum_probs=18.4
Q ss_pred CCcEEECCCCCcHHHHH-HHHHHHh
Q 003094 219 NNPCLIGEPGVGKTAIA-EGLAQRI 242 (848)
Q Consensus 219 ~~iLL~GppGtGKT~la-~~la~~l 242 (848)
+++++.+|+|+|||..+ ..+...+
T Consensus 39 ~~~li~~~TGsGKT~~~~~~~~~~l 63 (207)
T 2gxq_A 39 KDLIGQARTGTGKTLAFALPIAERL 63 (207)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHC
T ss_pred CCEEEECCCCChHHHHHHHHHHHHH
Confidence 68999999999999864 3444444
No 422
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.37 E-value=0.021 Score=56.38 Aligned_cols=26 Identities=23% Similarity=0.263 Sum_probs=22.5
Q ss_pred CCCCcEEECCCCCcHHHHHHHHHHHh
Q 003094 217 TKNNPCLIGEPGVGKTAIAEGLAQRI 242 (848)
Q Consensus 217 ~~~~iLL~GppGtGKT~la~~la~~l 242 (848)
.+..+.|+||+|+||||+++.|+..+
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 44567899999999999999999876
No 423
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.37 E-value=0.032 Score=56.01 Aligned_cols=24 Identities=21% Similarity=0.410 Sum_probs=21.9
Q ss_pred CCcEEECCCCCcHHHHHHHHHHHh
Q 003094 219 NNPCLIGEPGVGKTAIAEGLAQRI 242 (848)
Q Consensus 219 ~~iLL~GppGtGKT~la~~la~~l 242 (848)
..+.|+||+|+||||+++.|++.+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999999999999987
No 424
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.33 E-value=0.019 Score=61.18 Aligned_cols=34 Identities=35% Similarity=0.496 Sum_probs=27.3
Q ss_pred EEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccc
Q 003094 563 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSE 599 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~ 599 (848)
.+++.||+|+|||+|+..||+.+ +..++..|--.
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~l---~~eiIs~Ds~q 75 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAHF---PLEVINSDKMQ 75 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTS---CEEEEECCSST
T ss_pred eEEEECCCCCCHHHHHHHHHHHC---CCcEEcccccc
Confidence 48899999999999999999976 45566555443
No 425
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.32 E-value=0.032 Score=56.50 Aligned_cols=25 Identities=28% Similarity=0.512 Sum_probs=22.6
Q ss_pred CCCcEEECCCCCcHHHHHHHHHHHh
Q 003094 218 KNNPCLIGEPGVGKTAIAEGLAQRI 242 (848)
Q Consensus 218 ~~~iLL~GppGtGKT~la~~la~~l 242 (848)
+..+.|.||||+||||+++.|++.+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4467899999999999999999988
No 426
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.29 E-value=0.018 Score=56.86 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=20.4
Q ss_pred CcEEECCCCCcHHHHHHHHHHHh
Q 003094 220 NPCLIGEPGVGKTAIAEGLAQRI 242 (848)
Q Consensus 220 ~iLL~GppGtGKT~la~~la~~l 242 (848)
.+.|+|++|+||||+++.|+. +
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-L 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-T
T ss_pred EEEEECCCCcCHHHHHHHHHH-C
Confidence 478999999999999999998 6
No 427
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.29 E-value=0.024 Score=56.45 Aligned_cols=31 Identities=23% Similarity=0.308 Sum_probs=25.9
Q ss_pred hccCCCCCcEEECCCCCcHHHHHHHHHHHhh
Q 003094 213 LGRRTKNNPCLIGEPGVGKTAIAEGLAQRIA 243 (848)
Q Consensus 213 l~~~~~~~iLL~GppGtGKT~la~~la~~l~ 243 (848)
+....+..++|.|++|+||||+++.|++.+.
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3344556788999999999999999999885
No 428
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.25 E-value=0.05 Score=58.35 Aligned_cols=24 Identities=33% Similarity=0.545 Sum_probs=22.2
Q ss_pred eEEEeecCCcchHHHHHHHHHHHh
Q 003094 562 ASFIFSGPTGVGKSELAKALAAYY 585 (848)
Q Consensus 562 ~~lLl~Gp~GtGKT~lA~~la~~l 585 (848)
.+++|+||+|+|||+++++||..+
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHh
Confidence 468999999999999999999987
No 429
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.24 E-value=0.025 Score=55.74 Aligned_cols=26 Identities=27% Similarity=0.382 Sum_probs=22.3
Q ss_pred CCCcEEECCCCCcHHHHHHHHHHHhh
Q 003094 218 KNNPCLIGEPGVGKTAIAEGLAQRIA 243 (848)
Q Consensus 218 ~~~iLL~GppGtGKT~la~~la~~l~ 243 (848)
...+.|+||+|+||||+++.|+..+.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 45678999999999999999998763
No 430
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.21 E-value=0.029 Score=55.19 Aligned_cols=22 Identities=23% Similarity=0.434 Sum_probs=21.1
Q ss_pred EEeecCCcchHHHHHHHHHHHh
Q 003094 564 FIFSGPTGVGKSELAKALAAYY 585 (848)
Q Consensus 564 lLl~Gp~GtGKT~lA~~la~~l 585 (848)
++|.|++|+||||+++.|++.+
T Consensus 3 I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 3 IAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCccCHHHHHHHHHHhc
Confidence 7899999999999999999987
No 431
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.17 E-value=0.024 Score=55.42 Aligned_cols=24 Identities=29% Similarity=0.303 Sum_probs=21.8
Q ss_pred cEEECCCCCcHHHHHHHHHHHhhC
Q 003094 221 PCLIGEPGVGKTAIAEGLAQRIAS 244 (848)
Q Consensus 221 iLL~GppGtGKT~la~~la~~l~~ 244 (848)
|.|.|++|+||||+++.|++.+..
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 678999999999999999998854
No 432
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.16 E-value=0.059 Score=53.13 Aligned_cols=38 Identities=18% Similarity=0.212 Sum_probs=27.7
Q ss_pred eEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccc
Q 003094 562 ASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSE 599 (848)
Q Consensus 562 ~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~ 599 (848)
..+.+.||+|+||||+++.|+..+...+..++..+...
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD 60 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCc
Confidence 35789999999999999999988733344455444433
No 433
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.15 E-value=0.027 Score=55.44 Aligned_cols=28 Identities=29% Similarity=0.526 Sum_probs=23.6
Q ss_pred CCCCCcEEECCCCCcHHHHHHHHHHHhh
Q 003094 216 RTKNNPCLIGEPGVGKTAIAEGLAQRIA 243 (848)
Q Consensus 216 ~~~~~iLL~GppGtGKT~la~~la~~l~ 243 (848)
....-++|+||+|+||||+++.|+....
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3455678999999999999999998763
No 434
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.09 E-value=0.43 Score=44.33 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=20.3
Q ss_pred CCcEEECCCCCcHHHHHHHHHHH
Q 003094 219 NNPCLIGEPGVGKTAIAEGLAQR 241 (848)
Q Consensus 219 ~~iLL~GppGtGKT~la~~la~~ 241 (848)
-+++++|++|+|||++++.+...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999998864
No 435
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.09 E-value=0.024 Score=55.27 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=20.1
Q ss_pred CcEEECCCCCcHHHHHHHHHHHh
Q 003094 220 NPCLIGEPGVGKTAIAEGLAQRI 242 (848)
Q Consensus 220 ~iLL~GppGtGKT~la~~la~~l 242 (848)
.++|+||+|+||||+++.|+...
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~ 26 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQL 26 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHhccc
Confidence 36799999999999999999744
No 436
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.07 E-value=0.03 Score=56.28 Aligned_cols=23 Identities=39% Similarity=0.674 Sum_probs=21.4
Q ss_pred EEEeecCCcchHHHHHHHHHHHh
Q 003094 563 SFIFSGPTGVGKSELAKALAAYY 585 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l 585 (848)
.+.|.||+|+||||+++.|++.+
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999986
No 437
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.07 E-value=0.039 Score=58.00 Aligned_cols=35 Identities=29% Similarity=0.443 Sum_probs=27.6
Q ss_pred EEEeecCCcchHHHHHHHHHHHhcCCCCceEEeccccc
Q 003094 563 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEF 600 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~ 600 (848)
.+++.||+|+|||++|..||+.+ +..++..|...+
T Consensus 12 ~i~i~GptgsGKt~la~~La~~~---~~~iis~Ds~qv 46 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIELRKIL---PVELISVDSALI 46 (316)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS---CEEEEECCTTTT
T ss_pred EEEEECCCccCHHHHHHHHHHhC---CCcEEecccccc
Confidence 47889999999999999999987 455666554443
No 438
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.07 E-value=0.026 Score=55.69 Aligned_cols=22 Identities=27% Similarity=0.452 Sum_probs=20.3
Q ss_pred EEEeecCCcchHHHHHHHHHHHh
Q 003094 563 SFIFSGPTGVGKSELAKALAAYY 585 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l 585 (848)
.+.+.|++|+||||+++.|++ +
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-L 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-T
T ss_pred EEEEECCCCcCHHHHHHHHHH-C
Confidence 378999999999999999998 5
No 439
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.06 E-value=0.034 Score=55.37 Aligned_cols=27 Identities=19% Similarity=0.199 Sum_probs=23.2
Q ss_pred CCCCCcEEECCCCCcHHHHHHHHHHHh
Q 003094 216 RTKNNPCLIGEPGVGKTAIAEGLAQRI 242 (848)
Q Consensus 216 ~~~~~iLL~GppGtGKT~la~~la~~l 242 (848)
....+++|+|++|+|||+++..+....
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345679999999999999999998754
No 440
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=94.04 E-value=0.062 Score=62.57 Aligned_cols=40 Identities=18% Similarity=0.204 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHHHh
Q 003094 536 QDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYY 585 (848)
Q Consensus 536 q~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l 585 (848)
|..++..+...+... ...+++++|+|+|||.++-.++..+
T Consensus 183 Q~~ai~~~~~~~~~~----------~~~~ll~~~TGsGKT~~~~~~~~~l 222 (590)
T 3h1t_A 183 QQIAINRAVQSVLQG----------KKRSLITMATGTGKTVVAFQISWKL 222 (590)
T ss_dssp HHHHHHHHHHHHHTT----------CSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC----------CCceEEEecCCCChHHHHHHHHHHH
Confidence 556666665555321 1247899999999999987777665
No 441
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.04 E-value=0.03 Score=54.72 Aligned_cols=30 Identities=33% Similarity=0.461 Sum_probs=23.8
Q ss_pred EEeecCCcchHHHHHHHHHHHhcCCCCceE
Q 003094 564 FIFSGPTGVGKSELAKALAAYYFGSEEAMI 593 (848)
Q Consensus 564 lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i 593 (848)
+.|.|++|+||||+++.|++.+...+.+++
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~ 32 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVI 32 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 789999999999999999998743344444
No 442
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.02 E-value=0.028 Score=55.21 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.9
Q ss_pred CcEEECCCCCcHHHHHHHHHHHh
Q 003094 220 NPCLIGEPGVGKTAIAEGLAQRI 242 (848)
Q Consensus 220 ~iLL~GppGtGKT~la~~la~~l 242 (848)
.+.|+|++|+||||+++.|++.+
T Consensus 14 iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 36689999999999999999987
No 443
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.99 E-value=0.029 Score=55.30 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=21.2
Q ss_pred CCcEEECCCCCcHHHHHHHHHHHh
Q 003094 219 NNPCLIGEPGVGKTAIAEGLAQRI 242 (848)
Q Consensus 219 ~~iLL~GppGtGKT~la~~la~~l 242 (848)
.-+.|+||+|+||||+++.|+..+
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 446799999999999999999875
No 444
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=93.98 E-value=0.19 Score=46.98 Aligned_cols=24 Identities=25% Similarity=0.213 Sum_probs=20.7
Q ss_pred CcEEECCCCCcHHHHHHHHHHHhh
Q 003094 220 NPCLIGEPGVGKTAIAEGLAQRIA 243 (848)
Q Consensus 220 ~iLL~GppGtGKT~la~~la~~l~ 243 (848)
+++++|++|+|||++++.+...-.
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~ 25 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEI 25 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHcCCc
Confidence 478999999999999999986543
No 445
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=93.90 E-value=0.12 Score=49.96 Aligned_cols=24 Identities=25% Similarity=0.263 Sum_probs=20.9
Q ss_pred CCCcEEECCCCCcHHHHHHHHHHH
Q 003094 218 KNNPCLIGEPGVGKTAIAEGLAQR 241 (848)
Q Consensus 218 ~~~iLL~GppGtGKT~la~~la~~ 241 (848)
..+++++|++|+|||++++.+...
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcC
Confidence 356899999999999999999864
No 446
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.90 E-value=0.038 Score=56.74 Aligned_cols=47 Identities=17% Similarity=0.238 Sum_probs=31.6
Q ss_pred CCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCccc
Q 003094 217 TKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLV 265 (848)
Q Consensus 217 ~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~ 265 (848)
.+..|.|.|++|+||||+++.|++.+....+. ..+..+..++...+.
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d--~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVD--YRQKQVVILSQDSFY 67 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSC--GGGCSEEEEEGGGGB
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhhhhccc--ccCCceEEEecCccc
Confidence 34457799999999999999999987421000 112345667776665
No 447
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.90 E-value=0.031 Score=54.43 Aligned_cols=24 Identities=21% Similarity=0.358 Sum_probs=21.4
Q ss_pred CcEEECCCCCcHHHHHHHHHHHhh
Q 003094 220 NPCLIGEPGVGKTAIAEGLAQRIA 243 (848)
Q Consensus 220 ~iLL~GppGtGKT~la~~la~~l~ 243 (848)
-+.|+||+|+||||+++.|+..+.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 467999999999999999998774
No 448
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=93.87 E-value=0.23 Score=60.38 Aligned_cols=44 Identities=18% Similarity=0.283 Sum_probs=34.2
Q ss_pred cccChHHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCcchHHHHHHHHHH
Q 003094 532 RVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAA 583 (848)
Q Consensus 532 ~vigq~~~~~~l~~~~~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~ 583 (848)
..+|.+..++.|.+.+... .+...+.++||.|+|||+||+.+++
T Consensus 129 ~~VGRe~eLeeL~elL~~~--------d~~RVV~IvGmGGIGKTTLAk~Vy~ 172 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLEL--------RPAKNVLIDGVLGSGKTWVALDVCL 172 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHC--------CSSCEEEECCSTTSSHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhcc--------CCCeEEEEEcCCCccHHHHHHHHHH
Confidence 3488888888888887631 1123578999999999999999885
No 449
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=93.84 E-value=0.053 Score=59.61 Aligned_cols=37 Identities=24% Similarity=0.191 Sum_probs=26.2
Q ss_pred EEEeecCCcchHHHHHHHHHHHhcC------CCCceEEecccc
Q 003094 563 SFIFSGPTGVGKSELAKALAAYYFG------SEEAMIRLDMSE 599 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l~~------~~~~~i~i~~~~ 599 (848)
.++|+||||+|||+|++.++-.... .+...+.++...
T Consensus 180 i~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred EEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 4789999999999999977644311 234566666544
No 450
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=93.83 E-value=0.12 Score=49.96 Aligned_cols=25 Identities=28% Similarity=0.543 Sum_probs=21.4
Q ss_pred CCCCcEEECCCCCcHHHHHHHHHHH
Q 003094 217 TKNNPCLIGEPGVGKTAIAEGLAQR 241 (848)
Q Consensus 217 ~~~~iLL~GppGtGKT~la~~la~~ 241 (848)
....++++|++|+|||++++.+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcC
Confidence 4457899999999999999998764
No 451
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=93.82 E-value=0.16 Score=54.91 Aligned_cols=33 Identities=24% Similarity=0.291 Sum_probs=27.4
Q ss_pred HhccCCCCCcEEECCCCCcHHHHHHHHHHHhhC
Q 003094 212 ILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIAS 244 (848)
Q Consensus 212 ~l~~~~~~~iLL~GppGtGKT~la~~la~~l~~ 244 (848)
.+.......++|+||+|+|||++++.|++.+..
T Consensus 168 ~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~ 200 (422)
T 3ice_A 168 ASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAY 200 (422)
T ss_dssp HSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHH
T ss_pred eeeecCCcEEEEecCCCCChhHHHHHHHHHHhh
Confidence 344566678899999999999999999988754
No 452
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=93.80 E-value=0.13 Score=56.93 Aligned_cols=91 Identities=13% Similarity=0.192 Sum_probs=50.8
Q ss_pred eEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccccccccchhcccCCCCCCcc--cccccchhHHHHcCC------
Q 003094 562 ASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVG--YTEGGQLTEAVRRRP------ 633 (848)
Q Consensus 562 ~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~g~~g--~~~~~~l~~~~~~~~------ 633 (848)
...++.|+||||||++...++.. ...++..-..+.. ....+-+... +... ......+..++.+..
T Consensus 162 ~v~~I~G~aGsGKTt~I~~~~~~----~~~lVlTpT~~aa--~~l~~kl~~~-~~~~~~~~~V~T~dsfL~~~~~~~~~~ 234 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEILSRVNF----EEDLILVPGRQAA--EMIRRRANAS-GIIVATKDNVRTVDSFLMNYGKGARCQ 234 (446)
T ss_dssp EEEEEEECTTSCHHHHHHHHCCT----TTCEEEESCHHHH--HHHHHHHTTT-SCCCCCTTTEEEHHHHHHTTTSSCCCC
T ss_pred cEEEEEcCCCCCHHHHHHHHhcc----CCeEEEeCCHHHH--HHHHHHhhhc-CccccccceEEEeHHhhcCCCCCCCCc
Confidence 34688999999999998776642 2222222222211 1111111110 0000 011234555554332
Q ss_pred CeEEEEcCCCcCChHHHHHHHhhhcC
Q 003094 634 YTVVLFDEIEKAHPDVFNMMLQILED 659 (848)
Q Consensus 634 ~~Vl~lDEid~l~~~~~~~Ll~~le~ 659 (848)
..+|+|||+-++++..+..++..+..
T Consensus 235 ~d~liiDE~sm~~~~~l~~l~~~~~~ 260 (446)
T 3vkw_A 235 FKRLFIDEGLMLHTGCVNFLVEMSLC 260 (446)
T ss_dssp CSEEEEETGGGSCHHHHHHHHHHTTC
T ss_pred CCEEEEeCcccCCHHHHHHHHHhCCC
Confidence 57999999999999999988887643
No 453
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.80 E-value=0.088 Score=50.80 Aligned_cols=34 Identities=21% Similarity=0.307 Sum_probs=26.9
Q ss_pred HHHHHHHhccCCCCCcEEECCCCCcHHHHHHHHHH
Q 003094 206 IERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQ 240 (848)
Q Consensus 206 ~~~l~~~l~~~~~~~iLL~GppGtGKT~la~~la~ 240 (848)
+..+.+ +..+....++++|++|+|||++++.+..
T Consensus 5 ~~~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 5 FTRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp HHHHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred HHHHHH-hcCCCccEEEEECCCCCCHHHHHHHHhc
Confidence 444555 4456677899999999999999999884
No 454
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.76 E-value=0.054 Score=60.10 Aligned_cols=25 Identities=20% Similarity=0.303 Sum_probs=21.6
Q ss_pred CCCcEEECCCCCcHHHHHHHHHHHh
Q 003094 218 KNNPCLIGEPGVGKTAIAEGLAQRI 242 (848)
Q Consensus 218 ~~~iLL~GppGtGKT~la~~la~~l 242 (848)
+.-++|+|+||+||||+++.|++.+
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhc
Confidence 3446789999999999999999876
No 455
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.75 E-value=0.028 Score=55.62 Aligned_cols=23 Identities=35% Similarity=0.748 Sum_probs=21.1
Q ss_pred EEEeecCCcchHHHHHHHHHHHh
Q 003094 563 SFIFSGPTGVGKSELAKALAAYY 585 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l 585 (848)
.++|.||||+||||+++.|++.+
T Consensus 14 ~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 14 PLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 37899999999999999999876
No 456
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.73 E-value=0.042 Score=54.41 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=21.5
Q ss_pred EEEeecCCcchHHHHHHHHHHHh
Q 003094 563 SFIFSGPTGVGKSELAKALAAYY 585 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l 585 (848)
.++|.|++|+||||+++.|++.+
T Consensus 12 ~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 12 FIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 48899999999999999999986
No 457
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=93.73 E-value=0.034 Score=57.05 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=21.7
Q ss_pred EEEeecCCcchHHHHHHHHHHHh
Q 003094 563 SFIFSGPTGVGKSELAKALAAYY 585 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l 585 (848)
.+.|.|++|+||||+++.||+.+
T Consensus 50 ~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 50 SMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 38999999999999999999987
No 458
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.68 E-value=0.041 Score=53.98 Aligned_cols=33 Identities=21% Similarity=0.371 Sum_probs=26.0
Q ss_pred EEEeecCCcchHHHHHHHHHHHhcCCCCceEEeccccc
Q 003094 563 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEF 600 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~ 600 (848)
.+.++|++|+||||+++.+++.+ +.+ .+|+..+
T Consensus 14 iIgltG~~GSGKSTva~~L~~~l---g~~--vid~D~~ 46 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKY---GAH--VVNVDRI 46 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH---CCE--EEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc---CCE--EEECcHH
Confidence 47799999999999999999986 444 4555554
No 459
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=93.66 E-value=0.04 Score=54.84 Aligned_cols=37 Identities=27% Similarity=0.319 Sum_probs=28.2
Q ss_pred EEEeecCCcchHHHHHHHHHHHhc-CCCCceEEecccc
Q 003094 563 SFIFSGPTGVGKSELAKALAAYYF-GSEEAMIRLDMSE 599 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l~-~~~~~~i~i~~~~ 599 (848)
.++|.|++|+||||+++.|++.+. ..+.+++.+|...
T Consensus 27 ~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 27 TIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 64 (211)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence 478999999999999999999873 2234466666433
No 460
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.66 E-value=0.14 Score=57.30 Aligned_cols=32 Identities=22% Similarity=0.357 Sum_probs=25.0
Q ss_pred eEEEeecCCcchHHHHHHHHHHHhcCCCCceE
Q 003094 562 ASFIFSGPTGVGKSELAKALAAYYFGSEEAMI 593 (848)
Q Consensus 562 ~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i 593 (848)
..++|.||+|+||||+++.|+..+...+..+.
T Consensus 294 eVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~ 325 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIGKLARQFEQQGKSVM 325 (503)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred eEEEEECCCcccHHHHHHHHHHHhhhcCCeEE
Confidence 46889999999999999999988743333333
No 461
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=93.65 E-value=0.038 Score=60.21 Aligned_cols=30 Identities=23% Similarity=0.170 Sum_probs=25.9
Q ss_pred hccCCCCCcEEECCCCCcHHHHHHHHHHHh
Q 003094 213 LGRRTKNNPCLIGEPGVGKTAIAEGLAQRI 242 (848)
Q Consensus 213 l~~~~~~~iLL~GppGtGKT~la~~la~~l 242 (848)
+..+.+..++|+||||+||||+++.++..+
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 355666788999999999999999999876
No 462
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=93.63 E-value=0.043 Score=54.12 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=21.5
Q ss_pred EEEeecCCcchHHHHHHHHHHHh
Q 003094 563 SFIFSGPTGVGKSELAKALAAYY 585 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l 585 (848)
.+.+.|++|+|||++++.|++.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 47899999999999999999987
No 463
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=93.60 E-value=0.35 Score=51.55 Aligned_cols=29 Identities=24% Similarity=0.283 Sum_probs=24.0
Q ss_pred CCCCCcEEECCCCCcHHHHHHHHHHHhhC
Q 003094 216 RTKNNPCLIGEPGVGKTAIAEGLAQRIAS 244 (848)
Q Consensus 216 ~~~~~iLL~GppGtGKT~la~~la~~l~~ 244 (848)
+++.-+.|+||+|+||||+++.|+..+..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~ 155 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKN 155 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 34445679999999999999999998753
No 464
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=93.60 E-value=0.33 Score=55.13 Aligned_cols=40 Identities=15% Similarity=0.070 Sum_probs=29.3
Q ss_pred CCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCC
Q 003094 217 TKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMG 262 (848)
Q Consensus 217 ~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~ 262 (848)
+..-++|.|+||+|||+++..+|..+... .+.++++++..
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~------~g~~vl~~s~E 280 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTA------MGKKVGLAMLE 280 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTT------SCCCEEEEESS
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHh------cCCcEEEEecc
Confidence 33446789999999999999999887532 14456766653
No 465
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.59 E-value=0.032 Score=54.04 Aligned_cols=23 Identities=22% Similarity=0.521 Sum_probs=21.0
Q ss_pred EEEeecCCcchHHHHHHHHHHHh
Q 003094 563 SFIFSGPTGVGKSELAKALAAYY 585 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l 585 (848)
.+.|.||+|+||||+++.|+..+
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 47899999999999999999875
No 466
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=93.56 E-value=0.043 Score=55.54 Aligned_cols=33 Identities=30% Similarity=0.472 Sum_probs=26.1
Q ss_pred EEEeecCCcchHHHHHHHHHHHhcCCCCceEEeccccc
Q 003094 563 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEF 600 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~ 600 (848)
.+.+.||+|+|||++++.|++.+ + +..+|...+
T Consensus 11 ~i~i~G~~GsGKsTla~~la~~l---g--~~~~d~g~~ 43 (233)
T 3r20_A 11 VVAVDGPAGTGKSSVSRGLARAL---G--ARYLDTGAM 43 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH---T--CEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---C--CCcccCCcH
Confidence 48899999999999999999987 3 334555444
No 467
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.53 E-value=0.035 Score=54.89 Aligned_cols=21 Identities=24% Similarity=0.408 Sum_probs=19.4
Q ss_pred EEEeecCCcchHHHHHHHHHH
Q 003094 563 SFIFSGPTGVGKSELAKALAA 583 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~ 583 (848)
.+.|.||+|+||||+++.|+.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999997
No 468
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=93.52 E-value=0.59 Score=52.08 Aligned_cols=47 Identities=19% Similarity=0.230 Sum_probs=32.7
Q ss_pred HHHHHhc-cCCCCCcEEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeC
Q 003094 208 RVVQILG-RRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDM 261 (848)
Q Consensus 208 ~l~~~l~-~~~~~~iLL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~ 261 (848)
.|-.+++ -.+..-++|.|+||+|||+++..+|...... +.+++++++
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~-------g~~vl~fSl 233 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN-------DDVVNLHSL 233 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT-------TCEEEEECS
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc-------CCEEEEEEC
Confidence 3444444 3334457889999999999999999887542 456777764
No 469
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=93.49 E-value=0.45 Score=48.08 Aligned_cols=24 Identities=17% Similarity=0.123 Sum_probs=17.8
Q ss_pred CCcEEECCCCCcHHHHH-HHHHHHh
Q 003094 219 NNPCLIGEPGVGKTAIA-EGLAQRI 242 (848)
Q Consensus 219 ~~iLL~GppGtGKT~la-~~la~~l 242 (848)
.++++.+|+|+|||..+ -.+...+
T Consensus 67 ~~~l~~a~TGsGKT~~~~l~~l~~l 91 (245)
T 3dkp_A 67 RELLASAPTGSGKTLAFSIPILMQL 91 (245)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEECCCCCcHHHHHHHHHHHHH
Confidence 67999999999999864 3333444
No 470
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=93.49 E-value=0.13 Score=60.68 Aligned_cols=39 Identities=26% Similarity=0.368 Sum_probs=26.4
Q ss_pred ChHHHHHHHHHhccCCCCCcEEECCCCCcHHHHHHHHHHHh
Q 003094 202 RQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRI 242 (848)
Q Consensus 202 ~~~~~~~l~~~l~~~~~~~iLL~GppGtGKT~la~~la~~l 242 (848)
.+.+.+.|...|..+ .-.|+.||||||||+++-.+...+
T Consensus 191 N~~Q~~AV~~al~~~--~~~lI~GPPGTGKT~ti~~~I~~l 229 (646)
T 4b3f_X 191 DTSQKEAVLFALSQK--ELAIIHGPPGTGKTTTVVEIILQA 229 (646)
T ss_dssp CHHHHHHHHHHHHCS--SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcCC--CceEEECCCCCCHHHHHHHHHHHH
Confidence 346677777777532 345889999999997555444444
No 471
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.45 E-value=0.039 Score=56.33 Aligned_cols=23 Identities=26% Similarity=0.600 Sum_probs=21.5
Q ss_pred EEEeecCCcchHHHHHHHHHHHh
Q 003094 563 SFIFSGPTGVGKSELAKALAAYY 585 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l 585 (848)
.++|.||+|+||||+++.|++.+
T Consensus 29 ~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 29 RAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999887
No 472
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.44 E-value=0.043 Score=54.99 Aligned_cols=28 Identities=21% Similarity=0.322 Sum_probs=23.1
Q ss_pred cCCCCCcEEECCCCCcHHHHHHHHHHHh
Q 003094 215 RRTKNNPCLIGEPGVGKTAIAEGLAQRI 242 (848)
Q Consensus 215 ~~~~~~iLL~GppGtGKT~la~~la~~l 242 (848)
.+...-+.|+||+|+||||+++.|+..+
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3455667899999999999999999866
No 473
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.44 E-value=0.057 Score=55.44 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=22.4
Q ss_pred CCCcEEECCCCCcHHHHHHHHHHHh
Q 003094 218 KNNPCLIGEPGVGKTAIAEGLAQRI 242 (848)
Q Consensus 218 ~~~iLL~GppGtGKT~la~~la~~l 242 (848)
...+.|.||+|+||||+++.|++.+
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhc
Confidence 3457799999999999999999988
No 474
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.40 E-value=0.038 Score=54.36 Aligned_cols=32 Identities=16% Similarity=0.272 Sum_probs=25.1
Q ss_pred EEEeecCCcchHHHHHHHHHHHhcCCCCceEEec
Q 003094 563 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLD 596 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~ 596 (848)
.+.|.|++|+||||+++.|++.+ .+.+++.++
T Consensus 6 ~I~l~G~~GsGKsT~~~~L~~~l--~g~~~~~~~ 37 (204)
T 2v54_A 6 LIVFEGLDKSGKTTQCMNIMESI--PANTIKYLN 37 (204)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTS--CGGGEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH--CCCceEEEe
Confidence 48899999999999999999976 234455443
No 475
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.38 E-value=0.041 Score=58.78 Aligned_cols=23 Identities=35% Similarity=0.622 Sum_probs=21.5
Q ss_pred EEEeecCCcchHHHHHHHHHHHh
Q 003094 563 SFIFSGPTGVGKSELAKALAAYY 585 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l 585 (848)
.+++.||+|+|||++|+.||+.+
T Consensus 9 lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCcCcHHHHHHHHHHHc
Confidence 47899999999999999999987
No 476
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=93.38 E-value=0.15 Score=54.24 Aligned_cols=40 Identities=20% Similarity=0.342 Sum_probs=30.9
Q ss_pred CceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccc
Q 003094 560 PIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSE 599 (848)
Q Consensus 560 p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~ 599 (848)
+...++|.||+|+||||++..||..+...+.....+|+..
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~ 143 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADT 143 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 3456889999999999999999988754455666666554
No 477
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=93.37 E-value=1.1 Score=44.43 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=18.3
Q ss_pred CCcEEECCCCCcHHHH-HHHHHHHh
Q 003094 219 NNPCLIGEPGVGKTAI-AEGLAQRI 242 (848)
Q Consensus 219 ~~iLL~GppGtGKT~l-a~~la~~l 242 (848)
.++++.+|+|+|||.. +-.+.+.+
T Consensus 52 ~~~lv~~pTGsGKT~~~~~~~l~~l 76 (224)
T 1qde_A 52 HDVLAQAQSGTGKTGTFSIAALQRI 76 (224)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCEEEECCCCCcHHHHHHHHHHHHH
Confidence 6899999999999976 34444444
No 478
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=93.33 E-value=0.37 Score=48.76 Aligned_cols=18 Identities=22% Similarity=0.145 Sum_probs=15.7
Q ss_pred CCcEEECCCCCcHHHHHH
Q 003094 219 NNPCLIGEPGVGKTAIAE 236 (848)
Q Consensus 219 ~~iLL~GppGtGKT~la~ 236 (848)
.++++.+|+|+|||....
T Consensus 67 ~~~l~~apTGsGKT~~~~ 84 (242)
T 3fe2_A 67 LDMVGVAQTGSGKTLSYL 84 (242)
T ss_dssp CCEEEEECTTSCHHHHHH
T ss_pred CCEEEECCCcCHHHHHHH
Confidence 689999999999997643
No 479
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.33 E-value=0.038 Score=53.80 Aligned_cols=23 Identities=52% Similarity=0.798 Sum_probs=20.3
Q ss_pred EEEeecCCcchHHHHHHHHHHHh
Q 003094 563 SFIFSGPTGVGKSELAKALAAYY 585 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l 585 (848)
.+.|.||+|+||||+++.|+..+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~ 26 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQL 26 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHhccc
Confidence 37899999999999999999753
No 480
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.32 E-value=0.2 Score=55.64 Aligned_cols=43 Identities=16% Similarity=0.354 Sum_probs=33.5
Q ss_pred CCceEEEeecCCcchHHHHHHHHHHHhcCC-CCceEEecccccc
Q 003094 559 RPIASFIFSGPTGVGKSELAKALAAYYFGS-EEAMIRLDMSEFM 601 (848)
Q Consensus 559 ~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~-~~~~i~i~~~~~~ 601 (848)
++...++|+|++|+||||++-.||..+... +.....+|+..+.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r 141 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYR 141 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 334568899999999999999999888655 6677777776543
No 481
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=93.32 E-value=0.055 Score=53.34 Aligned_cols=23 Identities=22% Similarity=0.341 Sum_probs=21.5
Q ss_pred CcEEECCCCCcHHHHHHHHHHHh
Q 003094 220 NPCLIGEPGVGKTAIAEGLAQRI 242 (848)
Q Consensus 220 ~iLL~GppGtGKT~la~~la~~l 242 (848)
.+.|.|++|+||||+++.|++.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 57799999999999999999988
No 482
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=93.31 E-value=0.073 Score=60.20 Aligned_cols=46 Identities=7% Similarity=-0.044 Sum_probs=33.5
Q ss_pred CccCChHHHHHHHHHhc--cCCCCCcEEECCCCCcHHHHHHHHHHHhh
Q 003094 198 PVVGRQPQIERVVQILG--RRTKNNPCLIGEPGVGKTAIAEGLAQRIA 243 (848)
Q Consensus 198 ~iiG~~~~~~~l~~~l~--~~~~~~iLL~GppGtGKT~la~~la~~l~ 243 (848)
+..-+.++.+.+.+... .+...+|+|.|.+|+||||++++|++.+.
T Consensus 373 ~~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 373 EWFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp TTTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred ccccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHH
Confidence 34455555555655542 23445678999999999999999999996
No 483
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.31 E-value=0.032 Score=55.70 Aligned_cols=42 Identities=24% Similarity=0.295 Sum_probs=32.7
Q ss_pred ChHHHHHHHHHhccCCCCCcEEECCCCCcHHHHHHHHHHHhh
Q 003094 202 RQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIA 243 (848)
Q Consensus 202 ~~~~~~~l~~~l~~~~~~~iLL~GppGtGKT~la~~la~~l~ 243 (848)
.++..+.+...+.......++|+|++|+||||++..++..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 14 NKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 445555566666555667889999999999999999998863
No 484
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.28 E-value=0.056 Score=53.56 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=21.5
Q ss_pred EEEeecCCcchHHHHHHHHHHHh
Q 003094 563 SFIFSGPTGVGKSELAKALAAYY 585 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l 585 (848)
.++|.|++|+||||+++.|++.+
T Consensus 11 ~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 11 LIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 48899999999999999999987
No 485
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=93.27 E-value=0.056 Score=52.50 Aligned_cols=26 Identities=27% Similarity=0.394 Sum_probs=22.2
Q ss_pred CCCCCcEEECCCCCcHHHHHHHHHHH
Q 003094 216 RTKNNPCLIGEPGVGKTAIAEGLAQR 241 (848)
Q Consensus 216 ~~~~~iLL~GppGtGKT~la~~la~~ 241 (848)
.....++++|++|+|||++++.+...
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34577999999999999999998753
No 486
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.26 E-value=0.049 Score=53.44 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=20.8
Q ss_pred eEEEeecCCcchHHHHHHHHHHH
Q 003094 562 ASFIFSGPTGVGKSELAKALAAY 584 (848)
Q Consensus 562 ~~lLl~Gp~GtGKT~lA~~la~~ 584 (848)
..+.+.|++|+|||++++.|++.
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC
Confidence 35889999999999999999985
No 487
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.25 E-value=0.039 Score=54.83 Aligned_cols=23 Identities=35% Similarity=0.580 Sum_probs=21.0
Q ss_pred EEEeecCCcchHHHHHHHHHHHh
Q 003094 563 SFIFSGPTGVGKSELAKALAAYY 585 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l 585 (848)
.+.|.||+|+||||+++.|+..+
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHST
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 47899999999999999999875
No 488
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=93.18 E-value=0.052 Score=53.86 Aligned_cols=25 Identities=40% Similarity=0.477 Sum_probs=22.4
Q ss_pred eEEEeecCCcchHHHHHHHHHHHhc
Q 003094 562 ASFIFSGPTGVGKSELAKALAAYYF 586 (848)
Q Consensus 562 ~~lLl~Gp~GtGKT~lA~~la~~l~ 586 (848)
..+.+.||+|+||||+++.|+..+.
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4578999999999999999999873
No 489
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=93.18 E-value=0.2 Score=49.68 Aligned_cols=95 Identities=18% Similarity=0.216 Sum_probs=50.7
Q ss_pred EEECCCCCcHHHHHHHHHHHhhCCCCCCCCCCceEEEEeCCccccccccc-chHHHHH------------HHHHHHHHhC
Q 003094 222 CLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYR-GEFEERL------------KKLMEEIKQS 288 (848)
Q Consensus 222 LL~GppGtGKT~la~~la~~l~~~~~~~~l~~~~v~~~~~~~l~~~~~~~-g~~~~~l------------~~l~~~~~~~ 288 (848)
+++||.|+||||.+..++.+.... +.+++.+....- ..+. +.....+ ..+++.+. .
T Consensus 32 vitG~MgsGKTT~lL~~a~r~~~~-------g~kVli~k~~~d---~R~ge~~i~s~~g~~~~a~~~~~~~~~~~~~~-~ 100 (214)
T 2j9r_A 32 VICGSMFSGKSEELIRRVRRTQFA-------KQHAIVFKPCID---NRYSEEDVVSHNGLKVKAVPVSASKDIFKHIT-E 100 (214)
T ss_dssp EEECSTTSCHHHHHHHHHHHHHHT-------TCCEEEEECC--------------------CCEEECSSGGGGGGGCC-S
T ss_pred EEECCCCCcHHHHHHHHHHHHHHC-------CCEEEEEEeccC---CcchHHHHHhhcCCeeEEeecCCHHHHHHHHh-c
Confidence 478999999999888888877542 444554432110 0000 0000000 11222222 1
Q ss_pred CCeEEEEcccchhhhCCCCCchHHHHHHHhhhhcCCceEEEEeeChHH
Q 003094 289 DEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATTLDE 336 (848)
Q Consensus 289 ~~~IL~IDEid~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~atn~~~ 336 (848)
..-+++|||+..+-+ +..+.+..+.+. ++.||.++-..+
T Consensus 101 ~~dvViIDEaQF~~~--------~~V~~l~~l~~~-~~~Vi~~Gl~~D 139 (214)
T 2j9r_A 101 EMDVIAIDEVQFFDG--------DIVEVVQVLANR-GYRVIVAGLDQD 139 (214)
T ss_dssp SCCEEEECCGGGSCT--------THHHHHHHHHHT-TCEEEEEECSBC
T ss_pred CCCEEEEECcccCCH--------HHHHHHHHHhhC-CCEEEEEecccc
Confidence 234899999998732 245666555444 677887776444
No 490
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=93.15 E-value=0.3 Score=49.98 Aligned_cols=25 Identities=24% Similarity=0.513 Sum_probs=21.4
Q ss_pred CCCCcEEECCCCCcHHHHHHHHHHH
Q 003094 217 TKNNPCLIGEPGVGKTAIAEGLAQR 241 (848)
Q Consensus 217 ~~~~iLL~GppGtGKT~la~~la~~ 241 (848)
...+|+|+|++|+|||++++.+...
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHhCC
Confidence 3457899999999999999998753
No 491
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.14 E-value=0.062 Score=55.09 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=21.4
Q ss_pred EEEeecCCcchHHHHHHHHHHHh
Q 003094 563 SFIFSGPTGVGKSELAKALAAYY 585 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l 585 (848)
.+.+.|++|+|||++|+.|++.+
T Consensus 24 iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999986
No 492
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.13 E-value=0.069 Score=52.81 Aligned_cols=36 Identities=28% Similarity=0.253 Sum_probs=26.6
Q ss_pred ceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEeccccc
Q 003094 561 IASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEF 600 (848)
Q Consensus 561 ~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~ 600 (848)
...+.+.|++|+||||+++.|++.+. .+..++...+
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~~----~~~~i~~D~~ 56 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHLP----NCSVISQDDF 56 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTST----TEEEEEGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC----CcEEEeCCcc
Confidence 34578999999999999999997641 3445555544
No 493
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.08 E-value=0.05 Score=51.55 Aligned_cols=28 Identities=32% Similarity=0.463 Sum_probs=23.9
Q ss_pred CCCCCcEEECCCCCcHHHHHHHHHHHhh
Q 003094 216 RTKNNPCLIGEPGVGKTAIAEGLAQRIA 243 (848)
Q Consensus 216 ~~~~~iLL~GppGtGKT~la~~la~~l~ 243 (848)
+...-+.|.||.|+||||+++.|+..+.
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l~ 58 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhCC
Confidence 4445578999999999999999999873
No 494
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=93.07 E-value=0.4 Score=54.16 Aligned_cols=38 Identities=21% Similarity=0.323 Sum_probs=27.6
Q ss_pred eEEEeecCCcchHHHHHHHHHHH-hcC---CCCceEEecccc
Q 003094 562 ASFIFSGPTGVGKSELAKALAAY-YFG---SEEAMIRLDMSE 599 (848)
Q Consensus 562 ~~lLl~Gp~GtGKT~lA~~la~~-l~~---~~~~~i~i~~~~ 599 (848)
.|+|+.|++|+|||++.+.|... ++. ....++-+|...
T Consensus 168 pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~ 209 (512)
T 2ius_A 168 PHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKM 209 (512)
T ss_dssp CSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCch
Confidence 46999999999999999988753 332 134566777654
No 495
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.06 E-value=0.043 Score=54.05 Aligned_cols=23 Identities=43% Similarity=0.733 Sum_probs=20.9
Q ss_pred EEEeecCCcchHHHHHHHHHHHh
Q 003094 563 SFIFSGPTGVGKSELAKALAAYY 585 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l 585 (848)
.+.|.||+|+||||+++.|+..+
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 47899999999999999999874
No 496
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=93.05 E-value=0.76 Score=47.12 Aligned_cols=19 Identities=21% Similarity=0.086 Sum_probs=16.0
Q ss_pred CCcEEECCCCCcHHHHHHH
Q 003094 219 NNPCLIGEPGVGKTAIAEG 237 (848)
Q Consensus 219 ~~iLL~GppGtGKT~la~~ 237 (848)
+++++.+|+|+|||..+..
T Consensus 92 ~~~lv~a~TGsGKT~~~~l 110 (262)
T 3ly5_A 92 RDLLAAAKTGSGKTLAFLI 110 (262)
T ss_dssp CCCEECCCTTSCHHHHHHH
T ss_pred CcEEEEccCCCCchHHHHH
Confidence 6899999999999986443
No 497
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=93.04 E-value=0.14 Score=53.69 Aligned_cols=24 Identities=33% Similarity=0.427 Sum_probs=21.8
Q ss_pred eEEEeecCCcchHHHHHHHHHHHh
Q 003094 562 ASFIFSGPTGVGKSELAKALAAYY 585 (848)
Q Consensus 562 ~~lLl~Gp~GtGKT~lA~~la~~l 585 (848)
..+.+.||+|+||||+++.|+..+
T Consensus 32 ~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 347899999999999999999987
No 498
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=93.03 E-value=0.067 Score=61.30 Aligned_cols=42 Identities=21% Similarity=0.322 Sum_probs=30.0
Q ss_pred hHHHHHHHHHh--ccCCCCCcEEECCCCCcHHHHHHHHHHHhhC
Q 003094 203 QPQIERVVQIL--GRRTKNNPCLIGEPGVGKTAIAEGLAQRIAS 244 (848)
Q Consensus 203 ~~~~~~l~~~l--~~~~~~~iLL~GppGtGKT~la~~la~~l~~ 244 (848)
....+.+.... .......+.|+|++|+||||+++.|+..+..
T Consensus 352 peV~~vLR~~~~~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 352 PEVLAELHRQTPPRERQGFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp HHHHHHHHHHSCCGGGSCEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred cchhhhhhhhcccccccceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 34444444433 2234456789999999999999999999863
No 499
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=93.01 E-value=0.24 Score=52.20 Aligned_cols=39 Identities=15% Similarity=0.260 Sum_probs=29.2
Q ss_pred ceEEEeecCCcchHHHHHHHHHHHhcCCCCceEEecccc
Q 003094 561 IASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSE 599 (848)
Q Consensus 561 ~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~ 599 (848)
...++|.||+|+||||++..||..+-..+..+..+++..
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~ 142 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADT 142 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECT
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccc
Confidence 346889999999999999999988743444555555543
No 500
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=92.99 E-value=0.044 Score=53.98 Aligned_cols=23 Identities=35% Similarity=0.586 Sum_probs=21.1
Q ss_pred EEEeecCCcchHHHHHHHHHHHh
Q 003094 563 SFIFSGPTGVGKSELAKALAAYY 585 (848)
Q Consensus 563 ~lLl~Gp~GtGKT~lA~~la~~l 585 (848)
.+.|.||+|+||||+++.|+..+
T Consensus 8 ~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 47899999999999999999875
Done!