Query 003095
Match_columns 848
No_of_seqs 359 out of 1850
Neff 6.2
Searched_HMMs 46136
Date Thu Mar 28 16:55:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003095.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003095hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03059 beta-galactosidase; P 100.0 4E-217 9E-222 1884.0 78.1 809 23-848 26-840 (840)
2 KOG0496 Beta-galactosidase [Ca 100.0 1E-151 2E-156 1284.2 42.5 627 24-746 17-649 (649)
3 PF01301 Glyco_hydro_35: Glyco 100.0 4E-89 8.7E-94 748.5 19.8 297 33-338 1-318 (319)
4 COG1874 LacA Beta-galactosidas 100.0 5.6E-39 1.2E-43 374.8 7.8 289 27-324 1-332 (673)
5 PF02449 Glyco_hydro_42: Beta- 99.8 8.5E-21 1.8E-25 213.6 12.8 261 48-340 2-372 (374)
6 PF02140 Gal_Lectin: Galactose 99.8 5.1E-20 1.1E-24 162.8 6.4 76 770-847 1-80 (80)
7 KOG4729 Galactoside-binding le 99.8 4.1E-19 8.8E-24 183.9 8.0 86 761-848 39-130 (265)
8 PF02836 Glyco_hydro_2_C: Glyc 99.2 4.1E-10 8.8E-15 123.3 18.0 150 27-217 1-156 (298)
9 PRK10150 beta-D-glucuronidase; 99.0 2.9E-08 6.2E-13 119.1 25.1 158 25-217 276-447 (604)
10 PF13364 BetaGal_dom4_5: Beta- 98.9 1.7E-09 3.7E-14 101.8 6.8 69 622-718 33-104 (111)
11 PF00150 Cellulase: Cellulase 98.9 1.9E-08 4.2E-13 107.6 14.1 159 37-217 4-170 (281)
12 PRK09525 lacZ beta-D-galactosi 98.8 1.5E-07 3.2E-12 118.6 18.8 148 25-217 334-487 (1027)
13 PRK10340 ebgA cryptic beta-D-g 98.8 1.5E-07 3.2E-12 118.6 18.2 187 25-254 318-514 (1021)
14 COG3250 LacZ Beta-galactosidas 98.6 5.8E-07 1.3E-11 109.7 14.8 135 25-206 284-424 (808)
15 PF13364 BetaGal_dom4_5: Beta- 98.4 1.4E-06 3.1E-11 82.0 10.1 84 466-556 24-110 (111)
16 smart00633 Glyco_10 Glycosyl h 98.1 1E-05 2.2E-10 87.0 8.6 116 79-219 3-125 (254)
17 PF02837 Glyco_hydro_2_N: Glyc 98.1 3.2E-05 6.9E-10 77.2 11.2 99 473-577 64-164 (167)
18 PF03198 Glyco_hydro_72: Gluca 97.9 9.3E-05 2E-09 80.8 12.9 156 21-215 5-179 (314)
19 PLN02705 beta-amylase 97.8 4.1E-05 8.8E-10 88.8 8.5 82 54-139 266-357 (681)
20 PLN02905 beta-amylase 97.8 5.6E-05 1.2E-09 87.9 8.7 81 55-139 285-375 (702)
21 TIGR03356 BGL beta-galactosida 97.8 5.2E-05 1.1E-09 87.5 8.0 109 56-185 54-163 (427)
22 PLN02801 beta-amylase 97.8 6.9E-05 1.5E-09 85.8 8.7 81 54-138 35-125 (517)
23 PLN02803 beta-amylase 97.7 8.2E-05 1.8E-09 85.6 8.8 81 55-139 106-196 (548)
24 PLN00197 beta-amylase; Provisi 97.7 8.4E-05 1.8E-09 85.7 8.9 82 54-139 125-216 (573)
25 PLN02161 beta-amylase 97.7 0.00016 3.4E-09 82.9 9.5 82 55-140 116-207 (531)
26 PF13204 DUF4038: Protein of u 97.4 0.00085 1.8E-08 73.7 10.3 226 31-285 2-274 (289)
27 PF01373 Glyco_hydro_14: Glyco 97.4 0.00023 5E-09 80.2 5.8 115 57-181 17-153 (402)
28 PF00331 Glyco_hydro_10: Glyco 97.0 0.001 2.2E-08 74.1 6.3 158 43-220 11-179 (320)
29 PF14488 DUF4434: Domain of un 96.9 0.011 2.3E-07 60.0 11.8 135 51-216 15-158 (166)
30 COG3693 XynA Beta-1,4-xylanase 96.7 0.0083 1.8E-07 65.7 9.9 133 65-220 55-194 (345)
31 PF02837 Glyco_hydro_2_N: Glyc 96.6 0.0035 7.6E-08 62.5 5.7 66 623-718 67-136 (167)
32 PF00232 Glyco_hydro_1: Glycos 96.5 0.0018 3.9E-08 75.5 4.0 109 56-185 58-168 (455)
33 COG2730 BglC Endoglucanase [Ca 96.5 0.0065 1.4E-07 69.9 8.4 118 54-186 66-193 (407)
34 PF07745 Glyco_hydro_53: Glyco 96.5 0.0065 1.4E-07 67.9 7.4 104 59-186 27-137 (332)
35 PRK10150 beta-D-glucuronidase; 96.3 0.024 5.3E-07 68.5 11.9 100 474-579 62-179 (604)
36 PLN02998 beta-glucosidase 96.0 0.0053 1.2E-07 72.3 4.2 100 55-162 81-182 (497)
37 PLN02849 beta-glucosidase 96.0 0.0096 2.1E-07 70.2 6.0 101 55-163 78-180 (503)
38 PRK10340 ebgA cryptic beta-D-g 95.9 0.034 7.4E-07 71.0 10.7 95 476-579 108-206 (1021)
39 PRK15014 6-phospho-beta-glucos 95.9 0.022 4.7E-07 66.9 8.3 97 55-163 68-167 (477)
40 PRK09852 cryptic 6-phospho-bet 95.8 0.02 4.3E-07 67.2 7.8 97 55-163 70-169 (474)
41 PRK09593 arb 6-phospho-beta-gl 95.8 0.0097 2.1E-07 69.9 5.2 100 56-163 73-175 (478)
42 PLN02814 beta-glucosidase 95.8 0.0073 1.6E-07 71.2 4.2 110 55-185 76-187 (504)
43 PRK09525 lacZ beta-D-galactosi 95.7 0.057 1.2E-06 69.0 11.9 96 476-579 119-218 (1027)
44 PRK13511 6-phospho-beta-galact 95.5 0.038 8.3E-07 64.8 8.3 95 56-162 54-149 (469)
45 PRK09589 celA 6-phospho-beta-g 95.3 0.017 3.6E-07 67.9 4.7 101 55-163 66-169 (476)
46 TIGR01233 lacG 6-phospho-beta- 95.2 0.055 1.2E-06 63.5 8.4 96 55-162 52-148 (467)
47 COG3867 Arabinogalactan endo-1 95.1 0.094 2E-06 56.9 9.0 116 58-186 65-183 (403)
48 PF14871 GHL6: Hypothetical gl 94.6 0.17 3.7E-06 49.4 8.8 98 60-162 4-123 (132)
49 COG3934 Endo-beta-mannanase [C 94.3 0.031 6.7E-07 64.0 3.1 158 33-208 3-169 (587)
50 COG2723 BglB Beta-glucosidase/ 93.6 0.071 1.5E-06 61.7 4.4 101 55-163 58-161 (460)
51 PF01229 Glyco_hydro_39: Glyco 92.6 0.48 1E-05 55.9 9.5 140 45-207 28-188 (486)
52 PRK09936 hypothetical protein; 92.3 0.35 7.5E-06 52.8 7.2 58 51-114 33-91 (296)
53 PF02638 DUF187: Glycosyl hydr 92.1 0.5 1.1E-05 52.6 8.3 117 54-182 17-162 (311)
54 TIGR01515 branching_enzym alph 91.3 2.7 5.9E-05 51.2 14.2 70 46-115 142-226 (613)
55 PF02055 Glyco_hydro_30: O-Gly 91.0 0.86 1.9E-05 54.0 9.3 333 39-401 74-490 (496)
56 smart00642 Aamy Alpha-amylase 90.8 0.56 1.2E-05 47.5 6.5 62 56-117 19-92 (166)
57 COG1649 Uncharacterized protei 89.9 2.2 4.7E-05 49.3 10.8 122 54-185 62-210 (418)
58 PRK14706 glycogen branching en 88.9 5.6 0.00012 48.7 14.1 53 63-115 175-237 (639)
59 PF11875 DUF3395: Domain of un 88.8 0.6 1.3E-05 46.6 4.8 64 782-847 55-133 (151)
60 TIGR00542 hxl6Piso_put hexulos 88.2 5.7 0.00012 43.0 12.4 127 55-213 15-149 (279)
61 PLN02447 1,4-alpha-glucan-bran 88.2 8.3 0.00018 48.0 14.8 59 56-115 251-320 (758)
62 PRK05402 glycogen branching en 87.5 5.1 0.00011 49.9 12.7 53 63-115 273-335 (726)
63 PRK12568 glycogen branching en 87.0 9.2 0.0002 47.4 14.3 54 61-116 275-340 (730)
64 PRK09441 cytoplasmic alpha-amy 86.7 0.96 2.1E-05 53.3 5.7 68 48-115 7-101 (479)
65 PRK14705 glycogen branching en 85.0 14 0.00029 48.5 14.9 54 62-115 772-835 (1224)
66 PRK01060 endonuclease IV; Prov 84.8 12 0.00025 40.5 12.5 93 58-179 14-109 (281)
67 PLN00196 alpha-amylase; Provis 84.0 3.4 7.3E-05 48.2 8.3 57 59-115 47-112 (428)
68 PRK13210 putative L-xylulose 5 84.0 7.6 0.00016 41.9 10.6 131 56-213 16-149 (284)
69 cd00019 AP2Ec AP endonuclease 83.0 9.1 0.0002 41.4 10.8 98 56-182 10-108 (279)
70 PF05913 DUF871: Bacterial pro 82.5 1.9 4.1E-05 49.1 5.3 71 44-120 2-72 (357)
71 PF01261 AP_endonuc_2: Xylose 80.4 2.9 6.2E-05 42.3 5.4 124 62-213 1-128 (213)
72 KOG2230 Predicted beta-mannosi 78.7 6.6 0.00014 46.5 7.9 113 31-183 327-444 (867)
73 PF13200 DUF4015: Putative gly 78.7 6.1 0.00013 44.2 7.6 111 54-165 11-136 (316)
74 TIGR03234 OH-pyruv-isom hydrox 78.3 21 0.00046 38.0 11.5 43 57-113 15-57 (254)
75 PF00128 Alpha-amylase: Alpha 78.1 2.2 4.7E-05 45.9 3.8 57 59-115 7-72 (316)
76 TIGR02402 trehalose_TreZ malto 78.0 3.5 7.6E-05 49.5 5.9 53 60-115 115-180 (542)
77 smart00812 Alpha_L_fucos Alpha 77.8 83 0.0018 36.3 16.6 243 48-343 76-334 (384)
78 TIGR01531 glyc_debranch glycog 77.7 6.2 0.00014 51.6 8.1 112 33-150 104-235 (1464)
79 cd06593 GH31_xylosidase_YicI Y 77.2 4.2 9.1E-05 45.0 5.9 67 54-120 22-91 (308)
80 PF14307 Glyco_tran_WbsX: Glyc 77.2 20 0.00044 40.5 11.4 134 54-217 56-195 (345)
81 PRK13209 L-xylulose 5-phosphat 77.0 26 0.00057 37.8 11.9 125 57-213 22-154 (283)
82 PRK09856 fructoselysine 3-epim 75.9 29 0.00063 37.2 11.8 131 56-213 13-145 (275)
83 PF02065 Melibiase: Melibiase; 74.0 18 0.00038 41.9 9.9 112 48-159 50-179 (394)
84 TIGR02631 xylA_Arthro xylose i 73.5 42 0.00092 38.6 12.8 91 54-163 30-125 (382)
85 PRK10785 maltodextrin glucosid 71.8 7.1 0.00015 47.5 6.4 57 59-115 182-246 (598)
86 PRK12313 glycogen branching en 71.1 7 0.00015 47.8 6.2 54 62-115 177-240 (633)
87 PF10731 Anophelin: Thrombin i 71.0 3.4 7.4E-05 34.6 2.3 47 1-49 1-51 (65)
88 TIGR02403 trehalose_treC alpha 70.7 6 0.00013 47.5 5.4 59 57-115 28-95 (543)
89 PRK09989 hypothetical protein; 70.6 41 0.0009 36.0 11.4 43 57-113 16-58 (258)
90 PLN02960 alpha-amylase 70.5 7.9 0.00017 48.6 6.4 56 60-115 421-486 (897)
91 PRK09505 malS alpha-amylase; R 70.4 7.6 0.00016 47.9 6.2 58 58-115 232-312 (683)
92 PRK09997 hydroxypyruvate isome 69.9 52 0.0011 35.2 11.9 42 58-113 17-58 (258)
93 cd06602 GH31_MGAM_SI_GAA This 69.6 35 0.00075 38.5 10.9 74 48-122 13-93 (339)
94 PF14683 CBM-like: Polysacchar 68.8 3.8 8.3E-05 41.6 2.7 63 647-722 91-153 (167)
95 PF03659 Glyco_hydro_71: Glyco 68.2 19 0.00041 41.5 8.5 54 53-115 14-67 (386)
96 PF02679 ComA: (2R)-phospho-3- 68.2 7.3 0.00016 42.0 4.8 52 55-116 83-134 (244)
97 PF13199 Glyco_hydro_66: Glyco 68.0 78 0.0017 38.4 13.8 158 56-219 118-308 (559)
98 PRK10933 trehalose-6-phosphate 67.9 9.6 0.00021 45.9 6.3 55 58-115 35-101 (551)
99 PF06832 BiPBP_C: Penicillin-B 67.8 9.9 0.00021 34.1 4.9 50 500-557 34-84 (89)
100 cd06589 GH31 The enzymes of gl 67.8 15 0.00033 39.8 7.3 71 48-119 13-90 (265)
101 PF07172 GRP: Glycine rich pro 67.7 3.5 7.5E-05 38.1 2.0 17 1-17 1-17 (95)
102 COG3623 SgaU Putative L-xylulo 67.2 11 0.00023 40.3 5.6 111 55-178 17-191 (287)
103 TIGR02104 pulA_typeI pullulana 66.8 9.3 0.0002 46.5 6.0 55 60-115 168-249 (605)
104 PF14587 Glyco_hydr_30_2: O-Gl 65.7 30 0.00065 39.7 9.2 122 84-220 93-227 (384)
105 cd06592 GH31_glucosidase_KIAA1 65.4 14 0.0003 41.0 6.6 68 51-121 25-96 (303)
106 smart00518 AP2Ec AP endonuclea 65.1 43 0.00093 36.0 10.1 92 58-179 12-104 (273)
107 TIGR02456 treS_nterm trehalose 64.2 9 0.00019 46.0 5.1 59 56-114 28-95 (539)
108 cd06591 GH31_xylosidase_XylS X 64.1 11 0.00024 42.1 5.5 71 48-119 13-90 (319)
109 cd04908 ACT_Bt0572_1 N-termina 62.4 25 0.00054 29.4 6.1 55 55-113 12-66 (66)
110 PF11324 DUF3126: Protein of u 61.8 14 0.00031 31.5 4.4 24 506-529 25-48 (63)
111 PF08531 Bac_rhamnosid_N: Alph 61.4 28 0.0006 35.4 7.3 55 500-555 6-67 (172)
112 PRK13398 3-deoxy-7-phosphohept 59.6 34 0.00074 37.4 8.1 75 34-115 21-98 (266)
113 PF01791 DeoC: DeoC/LacD famil 59.1 4.2 9E-05 43.3 1.0 53 59-114 79-131 (236)
114 cd06598 GH31_transferase_CtsZ 58.8 17 0.00037 40.5 5.8 67 54-120 22-95 (317)
115 cd06601 GH31_lyase_GLase GLase 58.3 48 0.0011 37.4 9.3 72 48-120 13-89 (332)
116 TIGR02401 trehalose_TreY malto 57.6 19 0.00041 45.3 6.3 62 54-115 14-85 (825)
117 KOG0626 Beta-glucosidase, lact 57.0 17 0.00038 43.0 5.6 113 57-179 92-208 (524)
118 PLN02361 alpha-amylase 56.9 22 0.00047 41.3 6.3 57 59-115 32-96 (401)
119 TIGR03849 arch_ComA phosphosul 56.7 19 0.00041 38.7 5.4 54 54-117 69-122 (237)
120 cd06603 GH31_GANC_GANAB_alpha 56.4 18 0.00039 40.7 5.5 74 48-122 13-91 (339)
121 COG3589 Uncharacterized conser 56.0 24 0.00052 39.7 6.1 72 44-122 4-76 (360)
122 TIGR00677 fadh2_euk methylenet 55.1 35 0.00076 37.6 7.3 109 42-164 130-251 (281)
123 cd06600 GH31_MGAM-like This fa 54.8 20 0.00042 40.1 5.4 72 48-120 13-89 (317)
124 COG3915 Uncharacterized protei 54.6 56 0.0012 32.2 7.6 47 61-113 39-87 (155)
125 PRK14511 maltooligosyl trehalo 54.0 24 0.00051 44.7 6.4 60 54-117 18-91 (879)
126 COG0296 GlgB 1,4-alpha-glucan 53.6 24 0.00051 43.1 6.1 58 55-114 164-233 (628)
127 cd06599 GH31_glycosidase_Aec37 53.2 27 0.00059 39.0 6.2 73 48-120 13-98 (317)
128 cd06595 GH31_xylosidase_XylS-l 52.8 27 0.00058 38.6 6.0 70 48-117 14-96 (292)
129 KOG0718 Molecular chaperone (D 51.9 20 0.00044 41.7 4.9 19 828-846 498-518 (546)
130 KOG2024 Beta-Glucuronidase GUS 51.0 27 0.00057 38.1 5.3 57 463-520 71-130 (297)
131 PRK14510 putative bifunctional 51.0 21 0.00046 47.1 5.6 56 60-115 191-267 (1221)
132 cd06564 GH20_DspB_LnbB-like Gl 50.9 33 0.00071 38.4 6.4 62 49-115 12-102 (326)
133 PF01055 Glyco_hydro_31: Glyco 50.8 21 0.00046 41.4 5.1 70 54-124 41-112 (441)
134 cd06604 GH31_glucosidase_II_Ma 50.3 27 0.00059 39.3 5.7 72 48-120 13-89 (339)
135 TIGR02100 glgX_debranch glycog 50.2 23 0.00049 43.9 5.4 55 61-115 189-265 (688)
136 PF08308 PEGA: PEGA domain; I 50.2 18 0.00039 30.8 3.3 39 501-549 3-41 (71)
137 PF01261 AP_endonuc_2: Xylose 49.4 77 0.0017 31.8 8.4 102 56-186 27-136 (213)
138 PF14307 Glyco_tran_WbsX: Glyc 49.2 1.3E+02 0.0028 34.1 10.8 44 30-75 150-194 (345)
139 KOG0496 Beta-galactosidase [Ca 48.5 4.4 9.5E-05 48.8 -1.0 77 739-830 313-389 (649)
140 PRK14507 putative bifunctional 48.3 31 0.00068 46.6 6.5 59 54-116 756-828 (1693)
141 cd06565 GH20_GcnA-like Glycosy 47.8 84 0.0018 34.9 8.9 66 54-122 15-87 (301)
142 PRK03705 glycogen debranching 46.3 31 0.00066 42.6 5.6 55 61-115 184-262 (658)
143 TIGR02102 pullulan_Gpos pullul 45.9 32 0.00069 44.9 5.9 21 95-115 555-575 (1111)
144 KOG4729 Galactoside-binding le 45.7 25 0.00054 38.1 4.1 85 762-848 139-231 (265)
145 PRK12677 xylose isomerase; Pro 45.7 1.9E+02 0.004 33.4 11.5 89 57-163 32-124 (384)
146 cd06563 GH20_chitobiase-like T 44.1 71 0.0015 36.3 7.8 60 53-115 15-106 (357)
147 PRK09267 flavodoxin FldA; Vali 43.8 1.2E+02 0.0025 30.3 8.6 74 36-112 44-117 (169)
148 COG1306 Uncharacterized conser 43.7 35 0.00077 37.7 4.9 59 54-115 75-144 (400)
149 KOG0259 Tyrosine aminotransfer 42.8 30 0.00066 39.5 4.4 88 23-114 149-238 (447)
150 PF12876 Cellulase-like: Sugar 42.6 33 0.0007 30.8 3.9 48 170-217 6-62 (88)
151 KOG1065 Maltase glucoamylase a 42.5 39 0.00084 42.2 5.6 69 48-121 300-377 (805)
152 PF08531 Bac_rhamnosid_N: Alph 42.4 25 0.00054 35.7 3.5 23 642-664 7-29 (172)
153 PF02228 Gag_p19: Major core p 42.2 11 0.00024 33.4 0.7 39 54-109 20-58 (92)
154 PRK14582 pgaB outer membrane N 42.1 1.3E+02 0.0028 37.4 10.0 110 56-184 334-468 (671)
155 cd06568 GH20_SpHex_like A subg 41.0 44 0.00096 37.6 5.5 75 31-115 3-95 (329)
156 TIGR00676 fadh2 5,10-methylene 40.7 92 0.002 34.0 7.8 108 41-163 125-246 (272)
157 cd06562 GH20_HexA_HexB-like Be 39.8 1E+02 0.0022 34.9 8.3 74 32-115 4-90 (348)
158 KOG3833 Uncharacterized conser 39.4 29 0.00063 38.6 3.5 53 57-115 444-499 (505)
159 cd06570 GH20_chitobiase-like_1 39.0 93 0.002 34.8 7.6 60 53-115 15-88 (311)
160 COG0366 AmyA Glycosidases [Car 38.9 37 0.00079 39.6 4.6 55 60-114 33-96 (505)
161 TIGR00433 bioB biotin syntheta 38.5 45 0.00098 36.3 5.0 52 59-113 123-176 (296)
162 PRK08673 3-deoxy-7-phosphohept 37.7 75 0.0016 36.0 6.6 76 33-115 86-164 (335)
163 cd06597 GH31_transferase_CtsY 37.5 60 0.0013 36.7 5.9 73 48-120 13-110 (340)
164 PLN03059 beta-galactosidase; P 36.7 1.3E+02 0.0029 38.1 8.9 43 622-664 468-517 (840)
165 cd02742 GH20_hexosaminidase Be 36.4 96 0.0021 34.4 7.2 60 53-115 13-92 (303)
166 cd06416 GH25_Lys1-like Lys-1 i 36.1 72 0.0016 32.8 5.8 87 46-135 56-157 (196)
167 cd06418 GH25_BacA-like BacA is 36.0 1.2E+02 0.0027 32.0 7.5 90 53-164 49-139 (212)
168 PRK00042 tpiA triosephosphate 35.9 63 0.0014 35.1 5.5 49 62-116 79-127 (250)
169 TIGR02103 pullul_strch alpha-1 35.4 56 0.0012 41.8 5.6 21 95-115 404-424 (898)
170 cd02875 GH18_chitobiase Chitob 34.8 2.6E+02 0.0057 31.8 10.5 78 39-167 36-113 (358)
171 KOG1412 Aspartate aminotransfe 34.5 1.5E+02 0.0033 33.4 7.9 48 54-110 131-178 (410)
172 PF14701 hDGE_amylase: glucano 34.4 1.5E+02 0.0034 34.6 8.5 98 47-153 11-130 (423)
173 PLN02877 alpha-amylase/limit d 33.9 67 0.0014 41.3 5.9 21 95-115 466-486 (970)
174 PF00728 Glyco_hydro_20: Glyco 33.7 53 0.0012 36.6 4.7 59 54-115 16-93 (351)
175 PRK13791 lysozyme inhibitor; P 33.4 82 0.0018 30.1 5.1 19 1-19 2-20 (113)
176 cd00311 TIM Triosephosphate is 33.1 78 0.0017 34.2 5.6 49 62-116 77-125 (242)
177 PF08924 DUF1906: Domain of un 33.0 1.2E+02 0.0025 29.8 6.3 89 54-164 36-127 (136)
178 smart00481 POLIIIAc DNA polyme 32.1 1.5E+02 0.0033 24.7 6.2 45 57-114 16-60 (67)
179 PF04914 DltD_C: DltD C-termin 32.0 37 0.00081 33.2 2.7 50 96-164 37-87 (130)
180 COG1735 Php Predicted metal-de 31.8 1.9E+02 0.0042 32.4 8.3 118 60-217 52-170 (316)
181 PLN02784 alpha-amylase 31.6 91 0.002 39.5 6.4 57 59-115 524-588 (894)
182 PLN02763 hydrolase, hydrolyzin 31.5 99 0.0021 39.9 6.9 74 48-122 190-268 (978)
183 PRK10076 pyruvate formate lyas 30.7 2.1E+02 0.0044 30.3 8.2 127 55-213 53-209 (213)
184 PRK09432 metF 5,10-methylenete 30.1 1.1E+02 0.0024 33.9 6.4 88 61-164 168-266 (296)
185 PRK08645 bifunctional homocyst 30.0 1.4E+02 0.0031 36.6 7.8 109 39-163 461-578 (612)
186 PRK09856 fructoselysine 3-epim 30.0 59 0.0013 34.9 4.1 56 56-115 90-149 (275)
187 PRK13209 L-xylulose 5-phosphat 29.7 2.2E+02 0.0047 30.7 8.5 103 53-185 54-161 (283)
188 TIGR00587 nfo apurinic endonuc 29.6 3.2E+02 0.0069 29.7 9.7 93 59-179 14-108 (274)
189 cd01299 Met_dep_hydrolase_A Me 29.5 92 0.002 34.5 5.7 61 54-115 118-180 (342)
190 PLN02389 biotin synthase 28.9 68 0.0015 36.9 4.5 53 57-112 176-230 (379)
191 PRK12331 oxaloacetate decarbox 28.9 1E+02 0.0022 36.3 6.1 55 48-114 88-142 (448)
192 PF07691 PA14: PA14 domain; I 28.6 3.1E+02 0.0068 25.9 8.6 70 478-555 47-122 (145)
193 TIGR00419 tim triosephosphate 28.5 1.1E+02 0.0023 32.3 5.6 44 62-115 74-117 (205)
194 cd06545 GH18_3CO4_chitinase Th 27.8 2.1E+02 0.0045 30.6 7.8 96 86-210 36-132 (253)
195 cd08560 GDPD_EcGlpQ_like_1 Gly 27.4 1.9E+02 0.0042 33.1 7.7 53 57-115 246-298 (356)
196 COG1891 Uncharacterized protei 27.2 20 0.00044 36.6 -0.1 66 41-114 116-186 (235)
197 PRK11372 lysozyme inhibitor; P 27.2 1.3E+02 0.0028 28.6 5.3 18 1-18 1-18 (109)
198 PRK06703 flavodoxin; Provision 27.2 2.8E+02 0.006 27.0 8.0 101 36-163 46-148 (151)
199 COG1523 PulA Type II secretory 26.9 88 0.0019 38.9 5.2 55 61-115 205-285 (697)
200 TIGR02455 TreS_stutzeri trehal 26.3 1.4E+02 0.0031 36.7 6.7 75 54-132 76-175 (688)
201 PRK10426 alpha-glucosidase; Pr 25.5 4.1E+02 0.009 32.8 10.6 64 57-120 222-294 (635)
202 TIGR01698 PUNP purine nucleoti 25.5 95 0.0021 33.5 4.6 41 35-75 47-88 (237)
203 PLN02429 triosephosphate isome 25.1 1.2E+02 0.0027 34.0 5.5 44 63-116 141-188 (315)
204 cd07937 DRE_TIM_PC_TC_5S Pyruv 24.8 1.5E+02 0.0032 32.4 6.1 49 53-113 88-136 (275)
205 PRK10658 putative alpha-glucos 24.7 1.5E+02 0.0032 36.8 6.6 65 55-121 282-351 (665)
206 PF13380 CoA_binding_2: CoA bi 24.6 1.1E+02 0.0024 28.9 4.4 44 53-112 63-106 (116)
207 COG2884 FtsE Predicted ATPase 24.3 56 0.0012 34.4 2.5 16 649-664 55-70 (223)
208 PLN02229 alpha-galactosidase 24.2 1.4E+02 0.003 35.1 5.9 73 47-121 71-156 (427)
209 cd06594 GH31_glucosidase_YihQ 24.0 1.8E+02 0.004 32.4 6.8 67 54-120 21-96 (317)
210 cd06547 GH85_ENGase Endo-beta- 23.9 91 0.002 35.4 4.3 95 99-216 50-147 (339)
211 PRK13210 putative L-xylulose 5 23.8 96 0.0021 33.3 4.4 59 56-115 94-153 (284)
212 PRK14565 triosephosphate isome 23.5 1.4E+02 0.0031 32.1 5.5 49 62-116 78-126 (237)
213 PRK07094 biotin synthase; Prov 23.4 70 0.0015 35.5 3.3 50 59-111 129-181 (323)
214 cd04882 ACT_Bt0572_2 C-termina 23.3 1.6E+02 0.0034 23.8 4.7 55 55-111 10-64 (65)
215 PRK09997 hydroxypyruvate isome 23.3 94 0.002 33.2 4.2 59 56-115 85-144 (258)
216 PF01120 Alpha_L_fucos: Alpha- 23.2 1.1E+03 0.024 26.6 14.9 53 265-342 288-340 (346)
217 PTZ00372 endonuclease 4-like p 23.0 3.9E+02 0.0085 31.3 9.2 89 59-179 144-238 (413)
218 PRK05265 pyridoxine 5'-phospha 22.9 1.4E+02 0.0031 32.1 5.3 48 56-121 113-161 (239)
219 KOG3625 Alpha amylase [Carbohy 22.9 69 0.0015 40.5 3.2 56 54-112 140-214 (1521)
220 TIGR03700 mena_SCO4494 putativ 22.8 65 0.0014 36.5 2.9 51 58-111 149-204 (351)
221 PRK15492 triosephosphate isome 22.7 1.5E+02 0.0033 32.4 5.5 48 63-116 88-135 (260)
222 cd06415 GH25_Cpl1-like Cpl-1 l 22.6 2.9E+02 0.0062 28.5 7.4 43 95-137 108-157 (196)
223 PF08194 DIM: DIM protein; In 22.5 1.1E+02 0.0023 23.5 2.9 6 34-39 26-31 (36)
224 PTZ00333 triosephosphate isome 22.5 1.6E+02 0.0034 32.2 5.6 48 63-116 83-130 (255)
225 PLN02561 triosephosphate isome 22.3 1.5E+02 0.0033 32.2 5.5 49 62-116 81-129 (253)
226 PRK12858 tagatose 1,6-diphosph 22.1 1E+02 0.0022 35.0 4.3 66 47-115 98-163 (340)
227 PRK14040 oxaloacetate decarbox 21.8 1.3E+02 0.0028 36.8 5.3 53 48-112 89-141 (593)
228 PRK01904 hypothetical protein; 21.6 81 0.0017 33.5 3.1 38 1-41 1-40 (219)
229 PRK10966 exonuclease subunit S 21.3 4.7E+02 0.01 30.4 9.5 64 40-115 41-108 (407)
230 cd06569 GH20_Sm-chitobiase-lik 21.2 1.7E+02 0.0037 34.5 5.9 73 30-115 6-117 (445)
231 TIGR03551 F420_cofH 7,8-dideme 20.9 76 0.0017 35.8 3.0 49 59-111 141-195 (343)
232 cd03789 GT1_LPS_heptosyltransf 20.6 1.2E+02 0.0026 32.6 4.3 81 38-121 121-213 (279)
233 PF08306 Glyco_hydro_98M: Glyc 20.5 64 0.0014 36.1 2.1 91 42-157 104-202 (324)
234 KOG0622 Ornithine decarboxylas 20.3 1.3E+02 0.0028 35.0 4.5 67 53-129 190-257 (448)
235 PRK14566 triosephosphate isome 20.2 1.8E+02 0.0039 31.8 5.5 48 63-116 89-136 (260)
236 KOG0805 Carbon-nitrogen hydrol 20.1 2.8E+02 0.006 30.2 6.6 53 96-156 38-90 (337)
No 1
>PLN03059 beta-galactosidase; Provisional
Probab=100.00 E-value=4.3e-217 Score=1883.96 Aligned_cols=809 Identities=59% Similarity=1.096 Sum_probs=746.4
Q ss_pred CCeeEEEecceEEECCEEeEEEEEEeeCCCCCcccHHHHHHHHHhCCCCEEEEccccCccCCcCceeeecCcchHHHHHH
Q 003095 23 FGANVTYDHRAVVIGGKRRVLISGSIHYPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVK 102 (848)
Q Consensus 23 ~~~~v~~d~~~f~~dG~p~~~~sG~~Hy~R~~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~ 102 (848)
...+|++|+++|+|||||++|+||||||||+||++|+|+|+||||+|||||+||||||+|||+||+|||+|++||++||+
T Consensus 26 ~~~~v~~d~~~f~idG~p~~i~sG~iHY~R~~p~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~~G~~dF~G~~DL~~Fl~ 105 (840)
T PLN03059 26 GSASVSYDHRAFIINGQRRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGNYYFEDRYDLVKFIK 105 (840)
T ss_pred ceeEEEEeCCEEEECCEEEEEEEeCcccCcCCHHHHHHHHHHHHHcCCCeEEEEecccccCCCCCeeeccchHHHHHHHH
Confidence 56689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCcEEEEecCcccccccCCCCCCcccCcCCCeeeecCChhhHHHHHHHHHHHHHHHhhcccccccCCceEeecccc
Q 003095 103 LVAEAGLYAHLRIGPYVCAEWNFGGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIEN 182 (848)
Q Consensus 103 la~~~GL~VilrpGPYicaEw~~GG~P~WL~~~p~~~~Rt~d~~y~~~v~~~~~~l~~~l~~~~~~~~~gGpII~~QiEN 182 (848)
+|+|+||+|||||||||||||++||+|.||+++|+|++||+||+|+++|++|+++|+++++++++++++||||||+||||
T Consensus 106 la~e~GLyvilRpGPYIcAEw~~GGlP~WL~~~~~i~~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQIEN 185 (840)
T PLN03059 106 VVQAAGLYVHLRIGPYICAEWNFGGFPVWLKYVPGIEFRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQIEN 185 (840)
T ss_pred HHHHcCCEEEecCCcceeeeecCCCCchhhhcCCCcccccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999998899999999999999999
Q ss_pred cccccccccCcccHHHHHHHHHHHhhcCCCcceEEecCCCCCCccccCCCCcccCccCCCCCCCCeeeeecccccccccC
Q 003095 183 EYGNIDSAYGAAGKSYIKWAAGMALSLDTGVPWVMCQQSDAPDPIINTCNGFYCDQFTPNSNNKPKMWTENWSGWFLSFG 262 (848)
Q Consensus 183 Eyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~~~~~~~~~~~~~~ng~~~~~~~~~~p~~P~~~~E~~~Gwf~~wG 262 (848)
|||++...++.+|++||+||+++++++|++|||+||++.++++++++||||.+|+.|.+.++.+|+|+||||+|||++||
T Consensus 186 EYGs~~~~~~~~d~~Yl~~l~~~~~~~Gi~VPl~t~dg~~~~~~v~~t~Ng~~~~~f~~~~~~~P~m~tE~w~GWf~~wG 265 (840)
T PLN03059 186 EYGPVEWEIGAPGKAYTKWAADMAVKLGTGVPWVMCKQEDAPDPVIDTCNGFYCENFKPNKDYKPKMWTEAWTGWYTEFG 265 (840)
T ss_pred cccceecccCcchHHHHHHHHHHHHHcCCCcceEECCCCCCCccceecCCCchhhhcccCCCCCCcEEeccCchhHhhcC
Confidence 99987656667899999999999999999999999999888889999999999999988778899999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCeeeeeeeeeccCCCCCCCCCCCccccccCCCCCCCCCCCCChhhHHHHHHHHHHHhh
Q 003095 263 GAVPYRPVEDLAFAVARFFQRGGTFQNYYMYHGGTNFDRTSGGPFISTSYDYDAPLDEYGLIRQPKWGHLKDLHKAIKLC 342 (848)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~Ga~~~~TSYDYdApl~E~G~~~t~Ky~~lr~l~~~~~~~ 342 (848)
+++++|+++|++.+++++|++|+|++|||||||||||||||||++++|||||||||+|+|++++|||.+||++|++++.+
T Consensus 266 ~~~~~r~~~d~a~~~~~~l~~g~S~~N~YMfhGGTNFG~~~Ga~~~~TSYDYdAPL~E~G~~t~pKy~~lr~l~~~~~~~ 345 (840)
T PLN03059 266 GAVPNRPAEDLAFSVARFIQNGGSFINYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLPREPKWGHLRDLHKAIKLC 345 (840)
T ss_pred CCCCcCCHHHHHHHHHHHHHcCCeeEEeeeccCcCCcccccCCCccccccccCCccccccCcchhHHHHHHHHHHHHHhc
Confidence 99999999999999999999999988999999999999999999999999999999999999667999999999999988
Q ss_pred hhcccCCCCCCCCCCCCcceeEeecCCCceeeeeeccCCCcceEEEecCeeeecCCcceeecCCCcceeeccceeccccc
Q 003095 343 EAALVATDPTYPSLGPNLEATVYKTGSGLCSAFLANIGTNSDVTVKFNGNSYLLPAWSVSILPDCKNVVFNTAKINSVTL 422 (848)
Q Consensus 343 ~~~~~~~~p~~~~~~~~~~~~~y~~~~~~~~~fl~n~~~~~~~~v~~~~~~~~l~~~sv~il~~~~~v~~~t~~v~~~~~ 422 (848)
++.++..+|....+|+.+++.+|...+ .|++|+.|.+.+.+.+|+|++++|.||+|||+|||||+.++|+|++++.|+.
T Consensus 346 ~~~l~~~~p~~~~lg~~~ea~~y~~~~-~caaFl~n~~~~~~~~v~f~g~~y~lp~~Svsilpd~~~~lfnta~v~~q~~ 424 (840)
T PLN03059 346 EPALVSVDPTVTSLGSNQEAHVFKSKS-ACAAFLANYDTKYSVKVTFGNGQYDLPPWSVSILPDCKTAVFNTARLGAQSS 424 (840)
T ss_pred CccccCCCCceeccCCceeEEEccCcc-chhhheeccCCCCceeEEECCcccccCccceeecccccceeeeccccccccc
Confidence 887777777777889999999998665 7999999999899999999999999999999999999999999999988875
Q ss_pred cccccccccccccccccccCCCccccccc-cccCCCCCCCCCcchhhhcCCCCCcceEEEEEEEecCCCCccccCCCceE
Q 003095 423 VPSFSRQSLQVAADSSDAIGSGWSYINEP-VGISKDDAFTKPGLLEQINTTADQSDYLWYSLSTNIKADEPLLEDGSKTV 501 (848)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~~~~~~~~~~~~~~~Eql~~t~d~~Gyl~Y~t~i~~~~~~~~~~~~~~~~ 501 (848)
.+++.+. ...+.|+++.|+ ++...+.+++...++||+++|+|.+||+||+|+|....++...+++.+++
T Consensus 425 ~~~~~~~----------~~~~~w~~~~e~~~~~~~~~~~~~e~l~e~~n~t~d~~dYlwY~t~i~~~~~~~~~~~~~~~~ 494 (840)
T PLN03059 425 QMKMNPV----------GSTFSWQSYNEETASAYTDDTTTMDGLWEQINVTRDATDYLWYMTEVHIDPDEGFLKTGQYPV 494 (840)
T ss_pred eeecccc----------cccccceeecccccccccCCCcchhhHHHhhcccCCCCceEEEEEEEeecCCccccccCCCce
Confidence 4432211 245689999999 44445567777888899999999999999999998876654446677889
Q ss_pred EEeCCcceEEEEEECCEEEEEEeccCCCCeeEEeeeeccCCCCcEEEEEEeccCcccccCCccccCCccccceEEcccCC
Q 003095 502 LHVQSLGHALHAFINGKLVGSGYGSSSNAKVTVDFPIALAPGKNTFDLLSLTVGLQNYGAFYEKTGAGITGPVQLKGSGN 581 (848)
Q Consensus 502 L~i~~~~D~a~Vfvng~~vG~~~~~~~~~~~~~~~~i~l~~g~~~L~ILven~Gr~NyG~~~~~~~kGI~g~V~l~g~~~ 581 (848)
|+|.+++|++||||||+++|++++...+..++++.+++++.|.|+|+||||||||+|||++|+++.|||+|+|+|+|.+.
T Consensus 495 L~v~~~~d~~~vFVNg~~~Gt~~~~~~~~~~~~~~~v~l~~g~n~L~iLse~vG~~NyG~~le~~~kGI~g~V~i~g~~~ 574 (840)
T PLN03059 495 LTIFSAGHALHVFINGQLAGTVYGELSNPKLTFSQNVKLTVGINKISLLSVAVGLPNVGLHFETWNAGVLGPVTLKGLNE 574 (840)
T ss_pred EEEcccCcEEEEEECCEEEEEEEeecCCcceEEecccccCCCceEEEEEEEeCCCCccCcccccccccccccEEEecccC
Confidence 99999999999999999999999887777788888888989999999999999999999999989999999999999877
Q ss_pred CcccccccCCcEEEcCCCCccccCCC---CCCCCcCCCCCCCCCCCceEEEEEEECCCCCCCeEEeeCCCceEEEEECCe
Q 003095 582 GTNIDLSSQQWTYQTGLKGEELNFPS---GSSTQWDSKSTLPKLQPLVWYKTTFDAPAGSEPVAIDFTGMGKGEAWVNGQ 658 (848)
Q Consensus 582 ~~~~dl~~~~W~~~~~l~ge~~~l~~---~~~~~w~~~~~~~~~~~~~~Yk~~F~~p~~~d~~~Ld~~g~gKG~vwVNG~ 658 (848)
+ .+||+++.|.|+++|+||.++|.. ...+.|.+.+..+...+|+|||++|++|++.|||||||+|||||+|||||+
T Consensus 575 g-~~dls~~~W~y~lgL~GE~~~i~~~~~~~~~~W~~~~~~~~~~p~twYK~~Fd~p~g~Dpv~LDm~gmGKG~aWVNG~ 653 (840)
T PLN03059 575 G-TRDLSGWKWSYKIGLKGEALSLHTITGSSSVEWVEGSLLAQKQPLTWYKTTFDAPGGNDPLALDMSSMGKGQIWINGQ 653 (840)
T ss_pred C-ceecccCccccccCccceeccccccCCCCCccccccccccCCCCceEEEEEEeCCCCCCCEEEecccCCCeeEEECCc
Confidence 6 788998889999999999987733 456789776544445679999999999999999999999999999999999
Q ss_pred eeeecccccccCCCCCCCCCCcCCCcCccccccCCCCCcceeeccCccccccCCceEEEEEecCCCCccEEEEeeecccc
Q 003095 659 SIGRYWPTYVSQNGGCTDSCNYRGAYSSNKCLKNCGKPSQSLYHVPRSWLKSSGNTLVLFEEIGGDPTKISFVTKQLGSS 738 (848)
Q Consensus 659 nlGRYW~~~~g~~~g~~~~c~y~g~~~~~~c~~~c~gPqqtlYhVP~~~Lk~g~N~lvvfE~~g~~p~~i~l~~~~~~~~ 738 (848)
||||||+. .++.+|| +.|||||+|+++||+|||+||||+|||||++|||+|+|+||||||+|++|..|+|.++.+++
T Consensus 654 nIGRYW~~-~a~~~gC-~~c~y~g~~~~~kc~~~cggP~q~lYHVPr~~Lk~g~N~lViFEe~gg~p~~I~~~~~~~~~- 730 (840)
T PLN03059 654 SIGRHWPA-YTAHGSC-NGCNYAGTFDDKKCRTNCGEPSQRWYHVPRSWLKPSGNLLIVFEEWGGNPAGISLVKRTTDS- 730 (840)
T ss_pred cccccccc-ccccCCC-ccccccccccchhhhccCCCceeEEEeCcHHHhccCCceEEEEEecCCCCCceEEEEeecCc-
Confidence 99999986 4555799 88999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCCcccccccCcCC-CCCCCceeeecCCCCceEEEEeeeecCCCCCCCCCCCCCcccCCchHHHHHHHccC
Q 003095 739 LCSHVTDSHPLPVDMWGSDSKIQ-RKPGPVLSLECPNPNQVISSIKFASFGTPLGTCGSFSRGRCSSARSLSVVRQACVG 817 (848)
Q Consensus 739 ic~~v~~~~~~~~~~~~~~~~~~-~ce~~~~~L~C~~~g~~I~~I~~A~YGr~~~~C~~~~~~~C~~~~s~~~V~~~C~G 817 (848)
||++++|+|| +|++|++.+... .-....++|+|+ .|++|++|.+|+|||+.++|+++++++|++++|+++|+++|+|
T Consensus 731 ~c~~~~e~~p-~~~~w~~~~~~~~~~~~~~~~L~C~-~G~~Is~I~fAsYGrp~gtC~~~~~g~C~a~~S~~vV~kaC~G 808 (840)
T PLN03059 731 VCADIFEGQP-ALKNWQIIASGKVNSLQPKAHLWCP-PGQKISKIKFASFGVPQGTCGSFREGSCHAHKSYDAFERNCIG 808 (840)
T ss_pred ccccccccCC-ccccccccccccccccCCcEEEECC-CCceEEEEEEecCCCCCCCCCCCCCCCEeCCcHHHHHHHHCCC
Confidence 9999999994 699999955543 345678999999 9999977999999999999999999999999999999999999
Q ss_pred CCceEEeecCCcCC-CCCCCCcceEEEEEEeC
Q 003095 818 SKSCSIGVSVNTFG-DPCKGVMKSLAVEASCT 848 (848)
Q Consensus 818 k~~C~v~~~~~~Fg-DPCpgt~KyL~V~Y~C~ 848 (848)
|++|+|.+++++|| ||||||+|||+|+|+|+
T Consensus 809 k~~CsV~asn~~FggDPC~gt~KyL~V~~~Cs 840 (840)
T PLN03059 809 KQSCSVTVAPEVFGGDPCPDSMKKLSVEAVCS 840 (840)
T ss_pred CCceEEEeccceecCCCCCCceeEEEEEEEeC
Confidence 99999999999996 99999999999999996
No 2
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-151 Score=1284.16 Aligned_cols=627 Identities=60% Similarity=1.087 Sum_probs=572.0
Q ss_pred CeeEEEecceEEECCEEeEEEEEEeeCCCCCcccHHHHHHHHHhCCCCEEEEccccCccCCcCceeeecCcchHHHHHHH
Q 003095 24 GANVTYDHRAVVIGGKRRVLISGSIHYPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKL 103 (848)
Q Consensus 24 ~~~v~~d~~~f~~dG~p~~~~sG~~Hy~R~~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~l 103 (848)
++.|++|+++|++||+|++++||++||+|++|++|+|+|+|||++|+|+|+||||||.|||+||+|||+|+.||++||++
T Consensus 17 ~~~v~yd~~~~~idG~r~~~isGsIHY~R~~pe~W~~~i~k~k~~Gln~IqtYVfWn~Hep~~g~y~FsG~~DlvkFikl 96 (649)
T KOG0496|consen 17 SFNVTYDKRSLLIDGQRFILISGSIHYPRSTPEMWPDLIKKAKAGGLNVIQTYVFWNLHEPSPGKYDFSGRYDLVKFIKL 96 (649)
T ss_pred eeEEeccccceeecCCeeEEEEeccccccCChhhhHHHHHHHHhcCCceeeeeeecccccCCCCcccccchhHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCcEEEEecCcccccccCCCCCCcccCcCCCeeeecCChhhHHHHHHHHHHHHHHHhhcccccccCCceEeeccccc
Q 003095 104 VAEAGLYAHLRIGPYVCAEWNFGGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENE 183 (848)
Q Consensus 104 a~~~GL~VilrpGPYicaEw~~GG~P~WL~~~p~~~~Rt~d~~y~~~v~~~~~~l~~~l~~~~~~~~~gGpII~~QiENE 183 (848)
|++.||+||||+||||||||++||+|.||...|++.+||+|++|+++|++|+++|++++| +|+++|||||||+|||||
T Consensus 97 ~~~~GLyv~LRiGPyIcaEw~~GG~P~wL~~~pg~~~Rt~nepfk~~~~~~~~~iv~~mk--~L~~~qGGPIIl~QIENE 174 (649)
T KOG0496|consen 97 IHKAGLYVILRIGPYICAEWNFGGLPWWLRNVPGIVFRTDNEPFKAEMERWTTKIVPMMK--KLFASQGGPIILVQIENE 174 (649)
T ss_pred HHHCCeEEEecCCCeEEecccCCCcchhhhhCCceEEecCChHHHHHHHHHHHHHHHHHH--HHHhhcCCCEEEEEeech
Confidence 999999999999999999999999999998999999999999999999999999999999 899999999999999999
Q ss_pred ccccccccCcccHHHHHHHHHHHhhcCCCcceEEecCCCCCCccccCCCCccc-CccC-CCCCCCCeeeeeccccccccc
Q 003095 184 YGNIDSAYGAAGKSYIKWAAGMALSLDTGVPWVMCQQSDAPDPIINTCNGFYC-DQFT-PNSNNKPKMWTENWSGWFLSF 261 (848)
Q Consensus 184 yg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~~~~~~~~~~~~~~ng~~~-~~~~-~~~p~~P~~~~E~~~Gwf~~w 261 (848)
||.+...|++..++|++|-..|+...+.+|||+||.+.++|+.++++|||.+| +.|. +++|++|+||||||+|||++|
T Consensus 175 YG~~~~~~~~~~k~y~~w~a~m~~~l~~gvpw~mCk~~dapd~~in~cng~~c~~~f~~pn~~~kP~~wtE~wtgwf~~w 254 (649)
T KOG0496|consen 175 YGNYLRALGAEGKSYLKWAAVLATSLGTGVPWVMCKQDDAPDPGINTCNGFYCGDTFKRPNSPNKPLVWTENWTGWFTHW 254 (649)
T ss_pred hhHHHHHHHHHHHHhhccceEEEEecCCCCceeEecCCCCCCccccccCCccchhhhccCCCCCCCceecccccchhhhh
Confidence 99877677788899999999999999999999999999999999999999999 8888 899999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCeeeeeeeeeccCCCCCCCCCCCccccccCCCCCCCCCCCCChhhHHHHHHHHHHHh
Q 003095 262 GGAVPYRPVEDLAFAVARFFQRGGTFQNYYMYHGGTNFDRTSGGPFISTSYDYDAPLDEYGLIRQPKWGHLKDLHKAIKL 341 (848)
Q Consensus 262 G~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~Ga~~~~TSYDYdApl~E~G~~~t~Ky~~lr~l~~~~~~ 341 (848)
|++++.|++|+++..+++++++|+|++||||||||||||++|| ++.+|||||||||+ |..++|||.++|.+|..+..
T Consensus 255 Gg~~~~R~~e~ia~~va~fls~ggs~vNyYM~hGGTNFGrt~G-~~~atsy~~dap~d--gl~~~pk~ghlk~~hts~d~ 331 (649)
T KOG0496|consen 255 GGPHPCRPVEDIALSVARFLSKGGSSVNYYMYHGGTNFGRTNG-PFIATSYDYDAPLD--GLLRQPKYGHLKPLHTSYDY 331 (649)
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCccceEEEEeecccCCCcccC-cccccccccccccc--hhhcCCCccccccchhhhhh
Confidence 9999999999999999999999999999999999999999998 89999999999999 99999999999999999999
Q ss_pred hhhcccCCCCCCCCCCCCcceeEeecCCCceeeeeeccCCCcceEEEecCeeeecCCcceeecCCCcceeeccceecccc
Q 003095 342 CEAALVATDPTYPSLGPNLEATVYKTGSGLCSAFLANIGTNSDVTVKFNGNSYLLPAWSVSILPDCKNVVFNTAKINSVT 421 (848)
Q Consensus 342 ~~~~~~~~~p~~~~~~~~~~~~~y~~~~~~~~~fl~n~~~~~~~~v~~~~~~~~l~~~sv~il~~~~~v~~~t~~v~~~~ 421 (848)
+++.+..+++....+++ ..+.|+.|+.|.+......+.|++..+.+|+++|+|+++|++++|+|+++.++
T Consensus 332 ~ep~lv~gd~~~~kyg~---------~~~~C~~Fl~n~~~~~~~~v~f~~~~y~~~~~slsilpdck~~~~nta~~~~~- 401 (649)
T KOG0496|consen 332 CEPALVAGDITTAKYGN---------LREACAAFLSNNNGAPAAPVPFNKPKYRLPPWSLSILPDCKTVVYNTAKVMAQ- 401 (649)
T ss_pred cCccccccCcccccccc---------hhhHHHHHHhcCCCCCCCccccCCCccccCceeEEechhhcchhhhccccccc-
Confidence 88887766655444433 33459999999999888999999999999999999999999999999866432
Q ss_pred ccccccccccccccccccccCCCccccccccccCCCCCCCCCcchhhhcCCCCCcceEEEEEEEecCCCCccccCCCceE
Q 003095 422 LVPSFSRQSLQVAADSSDAIGSGWSYINEPVGISKDDAFTKPGLLEQINTTADQSDYLWYSLSTNIKADEPLLEDGSKTV 501 (848)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~Eql~~t~d~~Gyl~Y~t~i~~~~~~~~~~~~~~~~ 501 (848)
|....||++ +|..++ .+||++|+|.++.+.+++ ..
T Consensus 402 -----------------------~~~~~e~~~------------~~~~~~---~~~~ll~~~~~t~d~sd~-------t~ 436 (649)
T KOG0496|consen 402 -----------------------WISFTEPIP------------SEAVGQ---SFGGLLEQTNLTKDKSDT-------TS 436 (649)
T ss_pred -----------------------cccccCCCc------------cccccC---cceEEEEEEeeccccCCC-------ce
Confidence 444445443 666654 688999999998665542 56
Q ss_pred EEeC-CcceEEEEEECCEEEEEEeccCCCCeeEEeeeeccCCCCcEEEEEEeccCcccccCCccccCCccccceEEcccC
Q 003095 502 LHVQ-SLGHALHAFINGKLVGSGYGSSSNAKVTVDFPIALAPGKNTFDLLSLTVGLQNYGAFYEKTGAGITGPVQLKGSG 580 (848)
Q Consensus 502 L~i~-~~~D~a~Vfvng~~vG~~~~~~~~~~~~~~~~i~l~~g~~~L~ILven~Gr~NyG~~~~~~~kGI~g~V~l~g~~ 580 (848)
|+|. +++|++||||||+++|++++......+.+..++.|..|.|+|+|||||+||+||| +++++.|||+|+|+|+|+
T Consensus 437 ~~i~ls~g~~~hVfvNg~~~G~~~g~~~~~~~~~~~~~~l~~g~n~l~iL~~~~G~~n~G-~~e~~~~Gi~g~v~l~g~- 514 (649)
T KOG0496|consen 437 LKIPLSLGHALHVFVNGEFAGSLHGNNEKIKLNLSQPVGLKAGENKLALLSENVGLPNYG-HFENDFKGILGPVYLNGL- 514 (649)
T ss_pred EeecccccceEEEEECCEEeeeEeccccceeEEeecccccccCcceEEEEEEecCCCCcC-cccccccccccceEEeee-
Confidence 8888 9999999999999999999987666777888888999999999999999999999 889999999999999996
Q ss_pred CCcccccccCCcEEEcCCCCccccC---CCCCCCCcCCCCCCCCCCCceEEEEEEECCCCCCCeEEeeCCCceEEEEECC
Q 003095 581 NGTNIDLSSQQWTYQTGLKGEELNF---PSGSSTQWDSKSTLPKLQPLVWYKTTFDAPAGSEPVAIDFTGMGKGEAWVNG 657 (848)
Q Consensus 581 ~~~~~dl~~~~W~~~~~l~ge~~~l---~~~~~~~w~~~~~~~~~~~~~~Yk~~F~~p~~~d~~~Ld~~g~gKG~vwVNG 657 (848)
+|++++.|.++++|.||.+.+ .+..+++|......+...|.+||+ +|++|++.+||+|||.|||||+|||||
T Consensus 515 ----~~l~~~~w~~~~gl~ge~~~~~~~~~~~~v~w~~~~~~~~k~P~~w~k-~f~~p~g~~~t~Ldm~g~GKG~vwVNG 589 (649)
T KOG0496|consen 515 ----IDLTWTKWPYKVGLKGEKLGLHTEEGSSKVKWKKLSNTATKQPLTWYK-TFDIPSGSEPTALDMNGWGKGQVWVNG 589 (649)
T ss_pred ----eccceeecceecccccchhhccccccccccceeeccCcccCCCeEEEE-EecCCCCCCCeEEecCCCcceEEEECC
Confidence 467767899999999999876 235678998776544346789999 999999999999999999999999999
Q ss_pred eeeeecccccccCCCCCCCCCCcCCCcCccccccCCCCCcceeeccCccccccCCceEEEEEecCCCCccEEEEeeeccc
Q 003095 658 QSIGRYWPTYVSQNGGCTDSCNYRGAYSSNKCLKNCGKPSQSLYHVPRSWLKSSGNTLVLFEEIGGDPTKISFVTKQLGS 737 (848)
Q Consensus 658 ~nlGRYW~~~~g~~~g~~~~c~y~g~~~~~~c~~~c~gPqqtlYhVP~~~Lk~g~N~lvvfE~~g~~p~~i~l~~~~~~~ 737 (848)
+|||||||+ .|||++|| ||++|||++.|+||||||+|++|..|+|+++++..
T Consensus 590 ~niGRYW~~---------------------------~G~Q~~yh-vPr~~Lk~~~N~lvvfEee~~~p~~i~~~~~~~~~ 641 (649)
T KOG0496|consen 590 QNIGRYWPS---------------------------FGPQRTYH-VPRSWLKPSGNLLVVFEEEGGDPNGISFVTRPVLS 641 (649)
T ss_pred cccccccCC---------------------------CCCceEEE-CcHHHhCcCCceEEEEEeccCCCccceEEEeEeee
Confidence 999999986 47976666 99999999999999999999999999999999996
Q ss_pred ccccccccC
Q 003095 738 SLCSHVTDS 746 (848)
Q Consensus 738 ~ic~~v~~~ 746 (848)
+|..+.|+
T Consensus 642 -~~~~v~~~ 649 (649)
T KOG0496|consen 642 -TCAYVREH 649 (649)
T ss_pred -EeeecccC
Confidence 99988763
No 3
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=100.00 E-value=4e-89 Score=748.51 Aligned_cols=297 Identities=42% Similarity=0.809 Sum_probs=229.8
Q ss_pred eEEECCEEeEEEEEEeeCCCCCcccHHHHHHHHHhCCCCEEEEccccCccCCcCceeeecCcchHHHHHHHHHHcCcEEE
Q 003095 33 AVVIGGKRRVLISGSIHYPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAH 112 (848)
Q Consensus 33 ~f~~dG~p~~~~sG~~Hy~R~~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~Vi 112 (848)
+|+|||||++|+|||+||||+|+++|+|+|+||||+|+|||+|||+||+|||+||+|||+|++||++||++|+|+||+||
T Consensus 1 ~~~~~g~~~~~~~Ge~hy~r~p~~~W~~~l~k~ka~G~n~v~~yv~W~~he~~~g~~df~g~~dl~~f~~~a~~~gl~vi 80 (319)
T PF01301_consen 1 SFLIDGKPFFILSGEFHYFRIPPEYWRDRLQKMKAAGLNTVSTYVPWNLHEPEEGQFDFTGNRDLDRFLDLAQENGLYVI 80 (319)
T ss_dssp CEEETTEEE-EEEEEE-GGGS-GGGHHHHHHHHHHTT-SEEEEE--HHHHSSBTTB---SGGG-HHHHHHHHHHTT-EEE
T ss_pred CeEECCEEEEEEEeeeccccCChhHHHHHHHHHHhCCcceEEEeccccccCCCCCcccccchhhHHHHHHHHHHcCcEEE
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCcccccccCCCCCCcccCcCCCeeeecCChhhHHHHHHHHHHHHHHHhhcccccccCCceEeecccccccccccccC
Q 003095 113 LRIGPYVCAEWNFGGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGNIDSAYG 192 (848)
Q Consensus 113 lrpGPYicaEw~~GG~P~WL~~~p~~~~Rt~d~~y~~~v~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~ 192 (848)
|||||||||||++||+|.||++++++++||+||.|+++|++|+++|+++++ ++|+++||||||+|||||||. ++
T Consensus 81 lrpGpyi~aE~~~gG~P~Wl~~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~--~~~~~~GGpII~vQvENEyg~----~~ 154 (319)
T PF01301_consen 81 LRPGPYICAEWDNGGLPAWLLRKPDIRLRTNDPPFLEAVERWYRALAKIIK--PLQYTNGGPIIMVQVENEYGS----YG 154 (319)
T ss_dssp EEEES---TTBGGGG--GGGGGSTTS-SSSS-HHHHHHHHHHHHHHHHHHG--GGBGGGTSSEEEEEESSSGGC----TS
T ss_pred ecccceecccccchhhhhhhhccccccccccchhHHHHHHHHHHHHHHHHH--hhhhcCCCceehhhhhhhhCC----Cc
Confidence 999999999999999999999999999999999999999999999999999 789999999999999999993 33
Q ss_pred cccHHHHHHHHHHHhhcCCC-cceEEecCCC--------CCCccccCCCCcccCc-----c---CCCCCCCCeeeeeccc
Q 003095 193 AAGKSYIKWAAGMALSLDTG-VPWVMCQQSD--------APDPIINTCNGFYCDQ-----F---TPNSNNKPKMWTENWS 255 (848)
Q Consensus 193 ~~~~~y~~~l~~~~~~~g~~-vp~~~~~~~~--------~~~~~~~~~ng~~~~~-----~---~~~~p~~P~~~~E~~~ 255 (848)
++++||+.|++++++.+++ ++.++++... .++..+.+++++.+.. | ...+|++|+|++|||+
T Consensus 155 -~~~~Y~~~l~~~~~~~g~~~~~~~t~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~p~~P~~~~E~~~ 233 (319)
T PF01301_consen 155 -TDRAYMEALKDAYRDWGIDPVLLYTTDGPWGSWLPDGGLPGADIYATDNFPPGDNPDEYFGDQRSFQPNQPLMCTEFWG 233 (319)
T ss_dssp -S-HHHHHHHHHHHHHTT-SSSBEEEEESSSHCCHCCC-TTTGSCEEEEEETTTSSHHHHHHHHHHHHTTS--EEEEEES
T ss_pred -ccHhHHHHHHHHHHHhhCccceeeccCCCcccccccCCCCcceEEeccccCCCchHHHHHhhhhhcCCCCCeEEEEecc
Confidence 7899999999999999988 6677765421 2222233333444421 1 2557889999999999
Q ss_pred ccccccCCCCCCCCHHHHHHHHHHHHHcCCeeeeeeeeeccCCCCCCCCCCCc----cccccCCCCCCCCCCCCChhhHH
Q 003095 256 GWFLSFGGAVPYRPVEDLAFAVARFFQRGGTFQNYYMYHGGTNFDRTSGGPFI----STSYDYDAPLDEYGLIRQPKWGH 331 (848)
Q Consensus 256 Gwf~~wG~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~Ga~~~----~TSYDYdApl~E~G~~~t~Ky~~ 331 (848)
|||++||++++.+++++++..+++++++|.+ +||||||||||||+++|++.. +|||||+|||+|+|++ ||||.+
T Consensus 234 Gwf~~WG~~~~~~~~~~~~~~l~~~l~~g~~-~nyYM~hGGTNfG~~~ga~~~~~p~~TSYDY~ApI~E~G~~-~~Ky~~ 311 (319)
T PF01301_consen 234 GWFDHWGGPHYTRPAEDVAADLARMLSKGNS-LNYYMFHGGTNFGFWAGANYYGQPDITSYDYDAPIDEYGQL-TPKYYE 311 (319)
T ss_dssp S---BTTS--HHHHHHHHHHHHHHHHHHCSE-EEEEECE--B--TT-B-EETTTEEB-SB--TT-SB-TTS-B--HHHHH
T ss_pred ccccccCCCCccCCHHHHHHHHHHHHHhhcc-cceeeccccCCccccccCCCCCCCCcccCCcCCccCcCCCc-CHHHHH
Confidence 9999999999999999999999999999966 799999999999999887654 5999999999999999 699999
Q ss_pred HHHHHHH
Q 003095 332 LKDLHKA 338 (848)
Q Consensus 332 lr~l~~~ 338 (848)
||+||.+
T Consensus 312 lr~l~~~ 318 (319)
T PF01301_consen 312 LRRLHQK 318 (319)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 9999875
No 4
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.6e-39 Score=374.78 Aligned_cols=289 Identities=22% Similarity=0.314 Sum_probs=215.8
Q ss_pred EEEecceEEECCEEeEEEEEEeeCCCCCcccHHHHHHHHHhCCCCEEEE-ccccCccCCcCceeeecCcchHHHHHHHHH
Q 003095 27 VTYDHRAVVIGGKRRVLISGSIHYPRSTPEMWPDLIQKSKDGGLDVIET-YVFWNLHEPVRNQYNFEGRYDLVKFVKLVA 105 (848)
Q Consensus 27 v~~d~~~f~~dG~p~~~~sG~~Hy~R~~~~~W~d~l~k~ka~GlNtV~~-yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~ 105 (848)
|.+++..|++||+|++++||++||+|+|++.|.|||+|||++|+|+|++ |++||.|||++|+|||+ .+|.. ||++|+
T Consensus 1 ~~~~~~~~~~dg~~~~l~gG~y~p~~~p~~~w~ddl~~mk~~G~N~V~ig~faW~~~eP~eG~fdf~-~~D~~-~l~~a~ 78 (673)
T COG1874 1 VSYDGYSFIRDGRRILLYGGDYYPERWPRETWMDDLRKMKALGLNTVRIGYFAWNLHEPEEGKFDFT-WLDEI-FLERAY 78 (673)
T ss_pred CcccccceeeCCceeEEeccccChHHCCHHHHHHHHHHHHHhCCCeeEeeeEEeeccCccccccCcc-cchHH-HHHHHH
Confidence 3568889999999999999999999999999999999999999999999 99999999999999999 88888 999999
Q ss_pred HcCcEEEEecCc-ccccccCCCCCCcccCcCCCeeee---------cCChhhHHHHHHHHHHHHHHHhhcccccccCCce
Q 003095 106 EAGLYAHLRIGP-YVCAEWNFGGFPLWLHFIPGIQFR---------TDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPI 175 (848)
Q Consensus 106 ~~GL~VilrpGP-YicaEw~~GG~P~WL~~~p~~~~R---------t~d~~y~~~v~~~~~~l~~~l~~~~~~~~~gGpI 175 (848)
+.||+||||||| ..|.+|..+++|.||..++.-..| .++|.|++++++.+.+|.++ .+++|++|
T Consensus 79 ~~Gl~vil~t~P~g~~P~Wl~~~~PeiL~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer------~~~~~~~v 152 (673)
T COG1874 79 KAGLYVILRTGPTGAPPAWLAKKYPEILAVDENGRVRSDGARENICPVSPVYREYLDRILQQIRER------LYGNGPAV 152 (673)
T ss_pred hcCceEEEecCCCCCCchHHhcCChhheEecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHH------HhccCCce
Confidence 999999999999 999999999999999876653333 34667888877755544444 35899999
Q ss_pred EeecccccccccccccCcccHHHHHHHHHHHhhc-CCCcceEEec-CCCCC-CccccCCC-----Cccc--CccCCCCCC
Q 003095 176 ILSQIENEYGNIDSAYGAAGKSYIKWAAGMALSL-DTGVPWVMCQ-QSDAP-DPIINTCN-----GFYC--DQFTPNSNN 245 (848)
Q Consensus 176 I~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~-g~~vp~~~~~-~~~~~-~~~~~~~n-----g~~~--~~~~~~~p~ 245 (848)
|+||++||||++.+.+..|...+..||++.+-.+ ..+-+|=+.. ..+.. -..+.+.+ +... -+|......
T Consensus 153 ~~w~~dneY~~~~~~~~~~~~~f~~wLk~~yg~l~~ln~~w~t~~ws~t~~~~~~i~~p~~~~e~~~~~~~ld~~~f~~e 232 (673)
T COG1874 153 ITWQNDNEYGGHPCYCDYCQAAFRLWLKKGYGSLDNLNEAWGTSFWSHTYKDFDEIMSPNPFGELPLPGLYLDYRRFESE 232 (673)
T ss_pred eEEEccCccCCccccccccHHHHHHHHHhCcchHHhhhhhhhhhhcccccccHHhhcCCCCccccCCccchhhHhhhhhh
Confidence 9999999999865445567889999999887321 1222322111 00000 00011111 1110 122222233
Q ss_pred C----Ceeeeecccccc-cccCCCCCCCC-HHHHHHHHHHHHHcCCeeeeeeeeeccCCCC------CCCCCC---C---
Q 003095 246 K----PKMWTENWSGWF-LSFGGAVPYRP-VEDLAFAVARFFQRGGTFQNYYMYHGGTNFD------RTSGGP---F--- 307 (848)
Q Consensus 246 ~----P~~~~E~~~Gwf-~~wG~~~~~~~-~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG------~~~Ga~---~--- 307 (848)
+ +....|.+-+|| +.|..+.-... .+.-...+++.|..+.. -||||||+|++|+ +++|+. +
T Consensus 233 ~~~~~~~~~~~~~~~~~P~~pvt~nl~~~~~~~~~~~~~~~ld~~sw-dny~~~~~~~~~~~~~h~l~r~~~~~~~~~~m 311 (673)
T COG1874 233 QILEFVREEGEAIKAYFPNRPVTPNLLAAFKKFDAYKWEKVLDFASW-DNYPAWHRGRDFTKFIHDLFRNGKQGQPFWLM 311 (673)
T ss_pred hhHHHHHHHHHHHHHhCCCCCCChhHhhhhhhcchHHHHHhcChhhh-hhhhhhccccchhhhhHHHHHhhccCCceeec
Confidence 3 556677788888 77776655444 34445566777777666 6999999999999 776664 2
Q ss_pred ----ccccccCCCCCCCCCCC
Q 003095 308 ----ISTSYDYDAPLDEYGLI 324 (848)
Q Consensus 308 ----~~TSYDYdApl~E~G~~ 324 (848)
..|+|++++.+.+.|.+
T Consensus 312 e~~P~~vn~~~~n~~~~~G~~ 332 (673)
T COG1874 312 EQLPSVVNWALYNKLKRPGAL 332 (673)
T ss_pred cCCcchhhhhhccCCCCCccc
Confidence 58999999999999984
No 5
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.84 E-value=8.5e-21 Score=213.56 Aligned_cols=261 Identities=20% Similarity=0.277 Sum_probs=160.1
Q ss_pred eeCCCCCcccHHHHHHHHHhCCCCEEEE-ccccCccCCcCceeeecCcchHHHHHHHHHHcCcEEEEecCcccccccCCC
Q 003095 48 IHYPRSTPEMWPDLIQKSKDGGLDVIET-YVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFG 126 (848)
Q Consensus 48 ~Hy~R~~~~~W~d~l~k~ka~GlNtV~~-yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~VilrpGPYicaEw~~G 126 (848)
+++.++|++.|+++|++||++|+|+|++ .+.|+..||+||+|||+ .|+++|++|+++||+|||+.. .+
T Consensus 2 y~pe~~~~e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~---~lD~~l~~a~~~Gi~viL~~~--------~~ 70 (374)
T PF02449_consen 2 YYPEQWPEEEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFS---WLDRVLDLAAKHGIKVILGTP--------TA 70 (374)
T ss_dssp --GGGS-CCHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---H---HHHHHHHHHHCTT-EEEEEEC--------TT
T ss_pred CCcccCCHHHHHHHHHHHHHcCCCEEEEEEechhhccCCCCeeecH---HHHHHHHHHHhccCeEEEEec--------cc
Confidence 5678899999999999999999999996 67899999999999999 899999999999999999975 56
Q ss_pred CCCcccCc-CCCeee----------------ecCChhhHHHHHHHHHHHHHHHhhcccccccCCceEeeccccccccccc
Q 003095 127 GFPLWLHF-IPGIQF----------------RTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGNIDS 189 (848)
Q Consensus 127 G~P~WL~~-~p~~~~----------------Rt~d~~y~~~v~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~ 189 (848)
..|.||.+ +|++.. ..++|.|++++++++++|++++++ .+.||+|||+||++...
T Consensus 71 ~~P~Wl~~~~Pe~~~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~-------~p~vi~~~i~NE~~~~~- 142 (374)
T PF02449_consen 71 APPAWLYDKYPEILPVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGD-------HPAVIGWQIDNEPGYHR- 142 (374)
T ss_dssp TS-HHHHCCSGCCC-B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTT-------TTTEEEEEECCSTTCTS-
T ss_pred ccccchhhhcccccccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccc-------cceEEEEEeccccCcCc-
Confidence 78999975 676532 134789999999999999888874 45799999999998742
Q ss_pred ccC-cccHHHHHHHHHHHhhc-------CCC-------------cceEEecCC------C--------------------
Q 003095 190 AYG-AAGKSYIKWAAGMALSL-------DTG-------------VPWVMCQQS------D-------------------- 222 (848)
Q Consensus 190 ~~~-~~~~~y~~~l~~~~~~~-------g~~-------------vp~~~~~~~------~-------------------- 222 (848)
.|. .+.++|.+||++++... |.. .|..+.... |
T Consensus 143 ~~~~~~~~~f~~wLk~kY~ti~~LN~aWgt~~ws~~~~~f~~v~~P~~~~~~~~~~~~~D~~rF~~~~~~~~~~~~~~~i 222 (374)
T PF02449_consen 143 CYSPACQAAFRQWLKEKYGTIEALNRAWGTAFWSQRYSSFDEVPPPRPTSSPENPAQWLDWYRFQSDRVAEFFRWQADII 222 (374)
T ss_dssp --SHHHHHHHHHHHHHHHSSHHHHHHHHTTTGGG---SSGGG---S-S-SS---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHhCCHHHHHHHHcCCcccCccCcHHhcCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233 36678999999998631 111 121111000 0
Q ss_pred ---CCCccccCCC--C-----cc-------cC-----cc----------------------CCCCCCCCeeeeecccccc
Q 003095 223 ---APDPIINTCN--G-----FY-------CD-----QF----------------------TPNSNNKPKMWTENWSGWF 258 (848)
Q Consensus 223 ---~~~~~~~~~n--g-----~~-------~~-----~~----------------------~~~~p~~P~~~~E~~~Gwf 258 (848)
.|. ...+.| + .+ +| .+ +...+.+|.+++|.++| -
T Consensus 223 r~~~p~-~~vt~n~~~~~~~~~d~~~~a~~~D~~~~d~Y~~~~~~~~~~~~~~~a~~~dl~R~~~~~kpf~v~E~~~g-~ 300 (374)
T PF02449_consen 223 REYDPD-HPVTTNFMGSWFNGIDYFKWAKYLDVVSWDSYPDGSFDFYDDDPYSLAFNHDLMRSLAKGKPFWVMEQQPG-P 300 (374)
T ss_dssp HHHSTT--EEE-EE-TT---SS-HHHHGGGSSSEEEEE-HHHHHTTTT--TTHHHHHHHHHHHHTTT--EEEEEE--S--
T ss_pred HHhCCC-ceEEeCccccccCcCCHHHHHhhCCcceeccccCcccCCCCCCHHHHHHHHHHHHhhcCCCceEeecCCCC-C
Confidence 010 000111 0 00 00 00 01246799999999999 5
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHcCCeeeeeeeeeccCCCCCCCCCCCccccccCCCCCCCCC-CCCChhhHHHHHHHH
Q 003095 259 LSFGGAVPYRPVEDLAFAVARFFQRGGTFQNYYMYHGGTNFDRTSGGPFISTSYDYDAPLDEYG-LIRQPKWGHLKDLHK 337 (848)
Q Consensus 259 ~~wG~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~Ga~~~~TSYDYdApl~E~G-~~~t~Ky~~lr~l~~ 337 (848)
..|+.......+..+....-.-++.|+..+.|+-+ ...-+|.-.. ..+.|+-+| .+ +++|.+++++..
T Consensus 301 ~~~~~~~~~~~pg~~~~~~~~~~A~Ga~~i~~~~w-r~~~~g~E~~---------~~g~~~~dg~~~-~~~~~e~~~~~~ 369 (374)
T PF02449_consen 301 VNWRPYNRPPRPGELRLWSWQAIAHGADGILFWQW-RQSRFGAEQF---------HGGLVDHDGREP-TRRYREVAQLGR 369 (374)
T ss_dssp -SSSSS-----TTHHHHHHHHHHHTT-S-EEEC-S-B--SSSTTTT---------S--SB-TTS--B--HHHHHHHHHHH
T ss_pred CCCccCCCCCCCCHHHHHHHHHHHHhCCeeEeeec-cCCCCCchhh---------hcccCCccCCCC-CcHHHHHHHHHH
Confidence 66766555555566665555668899998777755 3334453221 125788889 55 899999999988
Q ss_pred HHH
Q 003095 338 AIK 340 (848)
Q Consensus 338 ~~~ 340 (848)
.|+
T Consensus 370 ~l~ 372 (374)
T PF02449_consen 370 ELK 372 (374)
T ss_dssp HHH
T ss_pred HHh
Confidence 775
No 6
>PF02140 Gal_Lectin: Galactose binding lectin domain; InterPro: IPR000922 The D-galactoside binding lectin purified from sea urchin (Anthocidaris crassispina) eggs exists as a disulphide-linked homodimer of two subunits; the dimeric form is essential for hemagglutination activity []. The sea urchin egg lectin (SUEL) forms a new class of lectins. Although SUEL was first isolated as a D-galactoside binding lectin, it was latter shown that it bind to L-rhamnose preferentially [, ]. L-rhamnose and D-galactose share the same hydroxyl group orientation at C2 and C4 of the pyranose ring structure. A cysteine-rich domain homologous to the SUEL protein has been identified in the following proteins [, , ]: Plant beta-galactosidases (3.2.1.23 from EC) (lactases). Mammalian latrophilin, the calcium independent receptor of alpha-latrotoxin (CIRL). The galactose-binding lectin domain is not required for alpha-latratoxin binding []. Human lectomedin-1. Rhamnose-binding lectin (SAL) from catfish (Silurus asotus, Namazu) eggs. This protein is composed of three tandem repeat domains homologous to the SUEL lectin domain. All cysteine positions of each domain are completely conserved []. The hypothetical B0457.1, F32A7.3A and F32A7.3B proteins from Caenorhabditis elegans. The human KIAA0821 protein. ; GO: 0005529 sugar binding; PDB: 2JXA_A 2JX9_A 2ZX2_A 2ZX3_B 2ZX0_B 2ZX1_B 2ZX4_B.
Probab=99.80 E-value=5.1e-20 Score=162.82 Aligned_cols=76 Identities=43% Similarity=0.842 Sum_probs=61.7
Q ss_pred eecCCCCceEEEEeeeecCCCC-CCCCCC---CCCcccCCchHHHHHHHccCCCceEEeecCCcCCCCCCCCcceEEEEE
Q 003095 770 LECPNPNQVISSIKFASFGTPL-GTCGSF---SRGRCSSARSLSVVRQACVGSKSCSIGVSVNTFGDPCKGVMKSLAVEA 845 (848)
Q Consensus 770 L~C~~~g~~I~~I~~A~YGr~~-~~C~~~---~~~~C~~~~s~~~V~~~C~Gk~~C~v~~~~~~FgDPCpgt~KyL~V~Y 845 (848)
|+|+ .|++| +|.+|+|||+. .+|+.. ...+|.+++++.+|+++|+||++|+|.+++++||||||++.|||+|+|
T Consensus 1 L~C~-~g~~I-~I~~A~YGR~~~~~C~~~~~~~~~~C~~~~~~~~v~~~C~g~~~C~v~~~~~~f~dpC~~~~KyL~V~Y 78 (80)
T PF02140_consen 1 LSCP-PGKVI-SIDSAFYGRTSSSICPSSSSGSNTNCSAPDALSIVKERCNGKQSCSVPADNSVFGDPCPGTSKYLEVTY 78 (80)
T ss_dssp EE-S-TTEEE-EEEEEEEEBSSSSTT--GGGCS-TTB--TTHHHHHHHHHTTBSEEEEESSHHHH--SSTTS--EEEEEE
T ss_pred CCCc-CCCEE-EEEEeecCCCCCCCCcCCCcCCCCccccccccchhHHhCCCCCccEEEeccCccCCCCCCCCeEEEEEE
Confidence 8999 99999 59999999994 589842 457899999999999999999999999999999999999999999999
Q ss_pred Ee
Q 003095 846 SC 847 (848)
Q Consensus 846 ~C 847 (848)
+|
T Consensus 79 ~C 80 (80)
T PF02140_consen 79 TC 80 (80)
T ss_dssp EE
T ss_pred EC
Confidence 99
No 7
>KOG4729 consensus Galactoside-binding lectin [General function prediction only]
Probab=99.77 E-value=4.1e-19 Score=183.85 Aligned_cols=86 Identities=30% Similarity=0.620 Sum_probs=79.8
Q ss_pred CCCCCCceeeecCCCCceEEEEeeeecCCC-CCCCCCC----CCCcccCCchHHHHHHHccCCCceEEeecCCcCC-CCC
Q 003095 761 QRKPGPVLSLECPNPNQVISSIKFASFGTP-LGTCGSF----SRGRCSSARSLSVVRQACVGSKSCSIGVSVNTFG-DPC 834 (848)
Q Consensus 761 ~~ce~~~~~L~C~~~g~~I~~I~~A~YGr~-~~~C~~~----~~~~C~~~~s~~~V~~~C~Gk~~C~v~~~~~~Fg-DPC 834 (848)
-+|||+.++|+|| .+.+|+ |++|+|||. ..+|.+. ...+|..++++.++.++|+++++|.|.|+.++|| |||
T Consensus 39 ~aCdG~~i~L~CP-~~dvIs-v~sanYGR~~~~iC~pd~~~~~Si~C~~p~s~~i~~~rCnnr~~C~vvv~s~~F~~DPC 116 (265)
T KOG4729|consen 39 YACDGERITLSCP-RGDVIS-VQSANYGRFSDKICDPDPGREESINCYLPKSFSILSSRCNNRRQCTVVVDSDVFGDDPC 116 (265)
T ss_pred EeecCceEEEEcC-CCCEEE-EEecccCcccccccCCccccccchhccChHHHHHHHHhcCCCceEEEEecCCccCCCCC
Confidence 3699999999999 999995 999999998 5689752 3579999999999999999999999999999999 999
Q ss_pred CCCcceEEEEEEeC
Q 003095 835 KGVMKSLAVEASCT 848 (848)
Q Consensus 835 pgt~KyL~V~Y~C~ 848 (848)
|||+|||+|+|.|.
T Consensus 117 PgT~KYLev~Y~Cv 130 (265)
T KOG4729|consen 117 PGTSKYLEVQYGCV 130 (265)
T ss_pred CCchhheEEEeccC
Confidence 99999999999994
No 8
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=99.21 E-value=4.1e-10 Score=123.26 Aligned_cols=150 Identities=21% Similarity=0.304 Sum_probs=107.7
Q ss_pred EEEecceEEECCEEeEEEEEEeeCCC------CCcccHHHHHHHHHhCCCCEEEEccccCccCCcCceeeecCcchHHHH
Q 003095 27 VTYDHRAVVIGGKRRVLISGSIHYPR------STPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKF 100 (848)
Q Consensus 27 v~~d~~~f~~dG~p~~~~sG~~Hy~R------~~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~ydF~g~~dl~~f 100 (848)
|.+.++.|+|||||+++-+...|... ++++.|+.+|++||++|+|+|++ .|-|. -.+|
T Consensus 1 vev~~~~~~lNGk~~~l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~-----~h~p~-----------~~~~ 64 (298)
T PF02836_consen 1 VEVKDGGFYLNGKPIFLRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRT-----HHYPP-----------SPRF 64 (298)
T ss_dssp EEEETTEEEETTEEE-EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEE-----TTS-------------SHHH
T ss_pred CEEECCEEEECCEEEEEEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEc-----ccccC-----------cHHH
Confidence 67899999999999999999999743 47899999999999999999999 55553 2789
Q ss_pred HHHHHHcCcEEEEecCcccccccCCCCCCcccCcCCCeeeecCChhhHHHHHHHHHHHHHHHhhcccccccCCceEeecc
Q 003095 101 VKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQI 180 (848)
Q Consensus 101 l~la~~~GL~VilrpGPYicaEw~~GG~P~WL~~~p~~~~Rt~d~~y~~~v~~~~~~l~~~l~~~~~~~~~gGpII~~Qi 180 (848)
+++|.++||.|+.-+ | ..+.-.|-... .......||.+.+.+.+-+++++.+.+.| +.||+|=+
T Consensus 65 ~~~cD~~GilV~~e~-~-------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~NH-------PSIi~W~~ 128 (298)
T PF02836_consen 65 YDLCDELGILVWQEI-P-------LEGHGSWQDFG-NCNYDADDPEFRENAEQELREMVRRDRNH-------PSIIMWSL 128 (298)
T ss_dssp HHHHHHHT-EEEEE--S--------BSCTSSSSTS-CTSCTTTSGGHHHHHHHHHHHHHHHHTT--------TTEEEEEE
T ss_pred HHHHhhcCCEEEEec-c-------ccccCccccCC-ccccCCCCHHHHHHHHHHHHHHHHcCcCc-------Cchheeec
Confidence 999999999998754 2 11221222111 01234578999999988888888887755 47999999
Q ss_pred cccccccccccCcccHHHHHHHHHHHhhcCCCcceEE
Q 003095 181 ENEYGNIDSAYGAAGKSYIKWAAGMALSLDTGVPWVM 217 (848)
Q Consensus 181 ENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~ 217 (848)
-||-. ...+++.|.+++++..-+-|...
T Consensus 129 gNE~~---------~~~~~~~l~~~~k~~DptRpv~~ 156 (298)
T PF02836_consen 129 GNESD---------YREFLKELYDLVKKLDPTRPVTY 156 (298)
T ss_dssp EESSH---------HHHHHHHHHHHHHHH-TTSEEEE
T ss_pred CccCc---------cccchhHHHHHHHhcCCCCceee
Confidence 99993 35788889999998776666544
No 9
>PRK10150 beta-D-glucuronidase; Provisional
Probab=99.04 E-value=2.9e-08 Score=119.06 Aligned_cols=158 Identities=15% Similarity=0.065 Sum_probs=111.7
Q ss_pred eeEEEecceEEECCEEeEEEEEEeeCCC------CCcccHHHHHHHHHhCCCCEEEEccccCccCCcCceeeecCcchHH
Q 003095 25 ANVTYDHRAVVIGGKRRVLISGSIHYPR------STPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLV 98 (848)
Q Consensus 25 ~~v~~d~~~f~~dG~p~~~~sG~~Hy~R------~~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~ydF~g~~dl~ 98 (848)
.+|++++..|+|||+|+++-+...|... ++++.|+.+|+.||++|+|+|++ .|-|. =.
T Consensus 276 R~i~~~~~~f~lNG~pv~lrG~~~h~~~~~~G~a~~~~~~~~d~~l~K~~G~N~vR~-----sh~p~-----------~~ 339 (604)
T PRK10150 276 RSVAVKGGQFLINGKPFYFKGFGKHEDADIRGKGLDEVLNVHDHNLMKWIGANSFRT-----SHYPY-----------SE 339 (604)
T ss_pred EEEEEeCCEEEECCEEEEEEeeeccCCCCccCCcCCHHHHHHHHHHHHHCCCCEEEe-----ccCCC-----------CH
Confidence 4588899999999999999999998532 46788999999999999999999 35442 16
Q ss_pred HHHHHHHHcCcEEEEecCcccccccCCCCCCcccC-------c-CCCeeeecCChhhHHHHHHHHHHHHHHHhhcccccc
Q 003095 99 KFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLH-------F-IPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYAS 170 (848)
Q Consensus 99 ~fl~la~~~GL~VilrpGPYicaEw~~GG~P~WL~-------~-~p~~~~Rt~d~~y~~~v~~~~~~l~~~l~~~~~~~~ 170 (848)
+|+++|.++||+|+-... .-|+..|+. + .+.......+|.+.++..+-+++++.+.+
T Consensus 340 ~~~~~cD~~GllV~~E~p--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mv~r~~------- 404 (604)
T PRK10150 340 EMLDLADRHGIVVIDETP--------AVGLNLSFGAGLEAGNKPKETYSEEAVNGETQQAHLQAIRELIARDK------- 404 (604)
T ss_pred HHHHHHHhcCcEEEEecc--------cccccccccccccccccccccccccccchhHHHHHHHHHHHHHHhcc-------
Confidence 899999999999997642 112222221 1 11111112456777776666777766655
Q ss_pred cCCceEeecccccccccccccCcccHHHHHHHHHHHhhcCCCcceEE
Q 003095 171 QGGPIILSQIENEYGNIDSAYGAAGKSYIKWAAGMALSLDTGVPWVM 217 (848)
Q Consensus 171 ~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~ 217 (848)
|...||||-|-||.... ......|++.|.+.+|+..-+-|...
T Consensus 405 NHPSIi~Ws~gNE~~~~----~~~~~~~~~~l~~~~k~~DptR~vt~ 447 (604)
T PRK10150 405 NHPSVVMWSIANEPASR----EQGAREYFAPLAELTRKLDPTRPVTC 447 (604)
T ss_pred CCceEEEEeeccCCCcc----chhHHHHHHHHHHHHHhhCCCCceEE
Confidence 44579999999997531 11345778888888888776666544
No 10
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=98.93 E-value=1.7e-09 Score=101.79 Aligned_cols=69 Identities=29% Similarity=0.636 Sum_probs=49.7
Q ss_pred CCCceEEEEEEECCCCCCCeE-Eee--CCCceEEEEECCeeeeecccccccCCCCCCCCCCcCCCcCccccccCCCCCcc
Q 003095 622 LQPLVWYKTTFDAPAGSEPVA-IDF--TGMGKGEAWVNGQSIGRYWPTYVSQNGGCTDSCNYRGAYSSNKCLKNCGKPSQ 698 (848)
Q Consensus 622 ~~~~~~Yk~~F~~p~~~d~~~-Ld~--~g~gKG~vwVNG~nlGRYW~~~~g~~~g~~~~c~y~g~~~~~~c~~~c~gPqq 698 (848)
..+..|||++|........+. |+. ....+.+|||||++|||||+. +|||+
T Consensus 33 ~~g~~~Yrg~F~~~~~~~~~~~l~~~~g~~~~~~vwVNG~~~G~~~~~---------------------------~g~q~ 85 (111)
T PF13364_consen 33 HAGYLWYRGTFTGTGQDTSLTPLNIQGGNAFRASVWVNGWFLGSYWPG---------------------------IGPQT 85 (111)
T ss_dssp SSCEEEEEEEEETTTEEEEEE-EEECSSTTEEEEEEETTEEEEEEETT---------------------------TECCE
T ss_pred CCCCEEEEEEEeCCCcceeEEEEeccCCCceEEEEEECCEEeeeecCC---------------------------CCccE
Confidence 347899999996422111223 333 457899999999999999963 67999
Q ss_pred eeeccCccccccCCceEEEE
Q 003095 699 SLYHVPRSWLKSSGNTLVLF 718 (848)
Q Consensus 699 tlYhVP~~~Lk~g~N~lvvf 718 (848)
+++ ||+.+|+.++|.|+|+
T Consensus 86 tf~-~p~~il~~~n~v~~vl 104 (111)
T PF13364_consen 86 TFS-VPAGILKYGNNVLVVL 104 (111)
T ss_dssp EEE-E-BTTBTTCEEEEEEE
T ss_pred EEE-eCceeecCCCEEEEEE
Confidence 999 9999999875554443
No 11
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=98.89 E-value=1.9e-08 Score=107.61 Aligned_cols=159 Identities=18% Similarity=0.208 Sum_probs=107.7
Q ss_pred CCEEeEEEEEEeeCCCCCcccHHHHHHHHHhCCCCEEEEccccCccC-CcCce-eeecCcchHHHHHHHHHHcCcEEEEe
Q 003095 37 GGKRRVLISGSIHYPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHE-PVRNQ-YNFEGRYDLVKFVKLVAEAGLYAHLR 114 (848)
Q Consensus 37 dG~p~~~~sG~~Hy~R~~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hE-p~~G~-ydF~g~~dl~~fl~la~~~GL~Vilr 114 (848)
+|+++.+.+-+.|+.. +..-++.|++||++|+|+||+.|.|...+ +.|+. ++=+.-..|+++|+.|+++||+|||-
T Consensus 4 ~G~~v~~~G~n~~w~~--~~~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild 81 (281)
T PF00150_consen 4 NGKPVNWRGFNTHWYN--PSITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILD 81 (281)
T ss_dssp TSEBEEEEEEEETTSG--GGSHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEE
T ss_pred CCCeEEeeeeecccCC--CCCHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 7999999999999322 12789999999999999999999995444 67764 66666679999999999999999986
Q ss_pred cCcccccccCCCCCCcccCcCCCeeeecCChhhHHHHHHHHHHHHHHHhhcccccccCCceEeecccccccccccc--cC
Q 003095 115 IGPYVCAEWNFGGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGNIDSA--YG 192 (848)
Q Consensus 115 pGPYicaEw~~GG~P~WL~~~p~~~~Rt~d~~y~~~v~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~--~~ 192 (848)
+= ..|.|...... -...+...+...++++.|+.+++ +..+|++++|-||....... +.
T Consensus 82 ~h----------~~~~w~~~~~~---~~~~~~~~~~~~~~~~~la~~y~-------~~~~v~~~el~NEP~~~~~~~~w~ 141 (281)
T PF00150_consen 82 LH----------NAPGWANGGDG---YGNNDTAQAWFKSFWRALAKRYK-------DNPPVVGWELWNEPNGGNDDANWN 141 (281)
T ss_dssp EE----------ESTTCSSSTST---TTTHHHHHHHHHHHHHHHHHHHT-------TTTTTEEEESSSSGCSTTSTTTTS
T ss_pred ec----------cCccccccccc---cccchhhHHHHHhhhhhhccccC-------CCCcEEEEEecCCccccCCccccc
Confidence 52 12777433211 11223334444555666666654 34579999999999864211 10
Q ss_pred ----cccHHHHHHHHHHHhhcCCCcceEE
Q 003095 193 ----AAGKSYIKWAAGMALSLDTGVPWVM 217 (848)
Q Consensus 193 ----~~~~~y~~~l~~~~~~~g~~vp~~~ 217 (848)
..-..+++.+.+.+|+.+.+.+++.
T Consensus 142 ~~~~~~~~~~~~~~~~~Ir~~~~~~~i~~ 170 (281)
T PF00150_consen 142 AQNPADWQDWYQRAIDAIRAADPNHLIIV 170 (281)
T ss_dssp HHHTHHHHHHHHHHHHHHHHTTSSSEEEE
T ss_pred cccchhhhhHHHHHHHHHHhcCCcceeec
Confidence 0113455566666777777766554
No 12
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=98.78 E-value=1.5e-07 Score=118.59 Aligned_cols=148 Identities=19% Similarity=0.190 Sum_probs=104.7
Q ss_pred eeEEEecceEEECCEEeEEEEEEeeCC------CCCcccHHHHHHHHHhCCCCEEEEccccCccCCcCceeeecCcchHH
Q 003095 25 ANVTYDHRAVVIGGKRRVLISGSIHYP------RSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLV 98 (848)
Q Consensus 25 ~~v~~d~~~f~~dG~p~~~~sG~~Hy~------R~~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~ydF~g~~dl~ 98 (848)
.+|++++..|+|||+|+++-+...|-. +++++.|+++|+.||++|+|+|++ .|-|. =.
T Consensus 334 R~iei~~~~f~LNGkpi~lrGvn~h~~~p~~G~a~t~e~~~~di~lmK~~g~NaVR~-----sHyP~-----------~p 397 (1027)
T PRK09525 334 RKVEIENGLLKLNGKPLLIRGVNRHEHHPEHGQVMDEETMVQDILLMKQHNFNAVRC-----SHYPN-----------HP 397 (1027)
T ss_pred EEEEEECCEEEECCEEEEEEEeEccccCcccCccCCHHHHHHHHHHHHHCCCCEEEe-----cCCCC-----------CH
Confidence 347778889999999999999999842 358899999999999999999999 35443 27
Q ss_pred HHHHHHHHcCcEEEEecCcccccccCCCCCCcccCcCCCeeeecCChhhHHHHHHHHHHHHHHHhhcccccccCCceEee
Q 003095 99 KFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILS 178 (848)
Q Consensus 99 ~fl~la~~~GL~VilrpGPYicaEw~~GG~P~WL~~~p~~~~Rt~d~~y~~~v~~~~~~l~~~l~~~~~~~~~gGpII~~ 178 (848)
+|+++|.|+||+|+--.. . |. .|-.|. .. + .+||.|.+++.+=+++++.+.+ |...||||
T Consensus 398 ~fydlcDe~GilV~dE~~-~---e~-hg~~~~---~~----~-~~dp~~~~~~~~~~~~mV~Rdr-------NHPSIi~W 457 (1027)
T PRK09525 398 LWYELCDRYGLYVVDEAN-I---ET-HGMVPM---NR----L-SDDPRWLPAMSERVTRMVQRDR-------NHPSIIIW 457 (1027)
T ss_pred HHHHHHHHcCCEEEEecC-c---cc-cCCccc---cC----C-CCCHHHHHHHHHHHHHHHHhCC-------CCCEEEEE
Confidence 899999999999997642 1 10 111111 00 1 3678887776665666666555 45689999
Q ss_pred cccccccccccccCcccHHHHHHHHHHHhhcCCCcceEE
Q 003095 179 QIENEYGNIDSAYGAAGKSYIKWAAGMALSLDTGVPWVM 217 (848)
Q Consensus 179 QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~ 217 (848)
=+-||-+. + ...+.+.+.+|+..-+-|...
T Consensus 458 SlgNE~~~-----g----~~~~~l~~~~k~~DptRpV~y 487 (1027)
T PRK09525 458 SLGNESGH-----G----ANHDALYRWIKSNDPSRPVQY 487 (1027)
T ss_pred eCccCCCc-----C----hhHHHHHHHHHhhCCCCcEEE
Confidence 99999762 2 123556667776655556444
No 13
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=98.76 E-value=1.5e-07 Score=118.62 Aligned_cols=187 Identities=18% Similarity=0.125 Sum_probs=119.6
Q ss_pred eeEEEecceEEECCEEeEEEEEEeeCCC------CCcccHHHHHHHHHhCCCCEEEEccccCccCCcCceeeecCcchHH
Q 003095 25 ANVTYDHRAVVIGGKRRVLISGSIHYPR------STPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLV 98 (848)
Q Consensus 25 ~~v~~d~~~f~~dG~p~~~~sG~~Hy~R------~~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~ydF~g~~dl~ 98 (848)
.+|++++..|+|||+|+++-+...|-.. ++++.|+.+|+.||++|+|+|++ .|-|. =.
T Consensus 318 R~iei~~~~f~lNGkpi~lrGvnrh~~~p~~G~a~~~e~~~~dl~lmK~~g~NavR~-----sHyP~-----------~~ 381 (1021)
T PRK10340 318 RDIKVRDGLFWINNRYVKLHGVNRHDNDHRKGRAVGMDRVEKDIQLMKQHNINSVRT-----AHYPN-----------DP 381 (1021)
T ss_pred EEEEEECCEEEECCEEEEEEEeecCCCCcccCccCCHHHHHHHHHHHHHCCCCEEEe-----cCCCC-----------CH
Confidence 3477888999999999999999988432 47889999999999999999998 25443 26
Q ss_pred HHHHHHHHcCcEEEEecCcccccccCCCCCCcccCcCCCeeeecCChhhHHHHHHHHHHHHHHHhhcccccccCCceEee
Q 003095 99 KFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILS 178 (848)
Q Consensus 99 ~fl~la~~~GL~VilrpGPYicaEw~~GG~P~WL~~~p~~~~Rt~d~~y~~~v~~~~~~l~~~l~~~~~~~~~gGpII~~ 178 (848)
+|+++|.|+||+|+--. |..|..|.. .. +...-+++|.|.++..+=+++++.+.+ |...||+|
T Consensus 382 ~fydlcDe~GllV~dE~-~~e~~g~~~-------~~--~~~~~~~~p~~~~~~~~~~~~mV~Rdr-------NHPSIi~W 444 (1021)
T PRK10340 382 RFYELCDIYGLFVMAET-DVESHGFAN-------VG--DISRITDDPQWEKVYVDRIVRHIHAQK-------NHPSIIIW 444 (1021)
T ss_pred HHHHHHHHCCCEEEECC-cccccCccc-------cc--ccccccCCHHHHHHHHHHHHHHHHhCC-------CCCEEEEE
Confidence 89999999999999764 322221211 00 011124677776655555556655555 45689999
Q ss_pred cccccccccccccCcccHHHHHHHHHHHhhcCCCcceEEecCCCC--CCccccCCCCcc--cCccCCCCCCCCeeeeecc
Q 003095 179 QIENEYGNIDSAYGAAGKSYIKWAAGMALSLDTGVPWVMCQQSDA--PDPIINTCNGFY--CDQFTPNSNNKPKMWTENW 254 (848)
Q Consensus 179 QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~~~~~~--~~~~~~~~ng~~--~~~~~~~~p~~P~~~~E~~ 254 (848)
=+-||-+. + . .++.+.+.+|+..-+-|+ +..+... ..+++...-+.. ...+....+++|++.+||-
T Consensus 445 slGNE~~~-----g---~-~~~~~~~~~k~~DptR~v-~~~~~~~~~~~Dv~~~~Y~~~~~~~~~~~~~~~kP~i~~Ey~ 514 (1021)
T PRK10340 445 SLGNESGY-----G---C-NIRAMYHAAKALDDTRLV-HYEEDRDAEVVDVISTMYTRVELMNEFGEYPHPKPRILCEYA 514 (1021)
T ss_pred ECccCccc-----c---H-HHHHHHHHHHHhCCCceE-EeCCCcCccccceeccccCCHHHHHHHHhCCCCCcEEEEchH
Confidence 99999762 2 2 235677777777655554 3332111 111221110000 0122233457999999994
No 14
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=98.57 E-value=5.8e-07 Score=109.69 Aligned_cols=135 Identities=19% Similarity=0.275 Sum_probs=104.6
Q ss_pred eeEEEecceEEECCEEeEEEEEEeeCCC-----C-CcccHHHHHHHHHhCCCCEEEEccccCccCCcCceeeecCcchHH
Q 003095 25 ANVTYDHRAVVIGGKRRVLISGSIHYPR-----S-TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLV 98 (848)
Q Consensus 25 ~~v~~d~~~f~~dG~p~~~~sG~~Hy~R-----~-~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~ydF~g~~dl~ 98 (848)
.+|++++..|.|||||+++-+..-|.+- . ..+.-+++|++||++|+|+|+| | |-|+ =.
T Consensus 284 R~iei~~~~~~iNGkpvf~kGvnrHe~~~~~G~~~~~~~~~~dl~lmk~~n~N~vRt---s--HyP~-----------~~ 347 (808)
T COG3250 284 RTVEIKDGLLLINGKPVFIRGVNRHEDDPILGRVTDEDAMERDLKLMKEANMNSVRT---S--HYPN-----------SE 347 (808)
T ss_pred EEEEEECCeEEECCeEEEEeeeecccCCCccccccCHHHHHHHHHHHHHcCCCEEEe---c--CCCC-----------CH
Confidence 4588999999999999999999999754 2 4555899999999999999999 5 6665 38
Q ss_pred HHHHHHHHcCcEEEEecCcccccccCCCCCCcccCcCCCeeeecCChhhHHHHHHHHHHHHHHHhhcccccccCCceEee
Q 003095 99 KFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILS 178 (848)
Q Consensus 99 ~fl~la~~~GL~VilrpGPYicaEw~~GG~P~WL~~~p~~~~Rt~d~~y~~~v~~~~~~l~~~l~~~~~~~~~gGpII~~ 178 (848)
+|++||.+.||+||--+ ..||-. +| +||.|++.+..=+++++++.+.| +.||||
T Consensus 348 ~~ydLcDelGllV~~Ea----~~~~~~--~~-------------~~~~~~k~~~~~i~~mver~knH-------PSIiiW 401 (808)
T COG3250 348 EFYDLCDELGLLVIDEA----MIETHG--MP-------------DDPEWRKEVSEEVRRMVERDRNH-------PSIIIW 401 (808)
T ss_pred HHHHHHHHhCcEEEEec----chhhcC--CC-------------CCcchhHHHHHHHHHHHHhccCC-------CcEEEE
Confidence 89999999999999874 223321 11 78889999988888888888755 479999
Q ss_pred cccccccccccccCcccHHHHHHHHHHH
Q 003095 179 QIENEYGNIDSAYGAAGKSYIKWAAGMA 206 (848)
Q Consensus 179 QiENEyg~~~~~~~~~~~~y~~~l~~~~ 206 (848)
=+.||-|. ++....-..|.++.-
T Consensus 402 s~gNE~~~-----g~~~~~~~~~~k~~d 424 (808)
T COG3250 402 SLGNESGH-----GSNHWALYRWFKASD 424 (808)
T ss_pred eccccccC-----ccccHHHHHHHhhcC
Confidence 99999883 333344444444443
No 15
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=98.42 E-value=1.4e-06 Score=82.03 Aligned_cols=84 Identities=20% Similarity=0.321 Sum_probs=58.7
Q ss_pred hhhhcCCCCCcceEEEEEEEecCCCCccccCCCceE-EEeC-CcceEEEEEECCEEEEEEeccCCCCeeEEeeeec-cCC
Q 003095 466 LEQINTTADQSDYLWYSLSTNIKADEPLLEDGSKTV-LHVQ-SLGHALHAFINGKLVGSGYGSSSNAKVTVDFPIA-LAP 542 (848)
Q Consensus 466 ~Eql~~t~d~~Gyl~Y~t~i~~~~~~~~~~~~~~~~-L~i~-~~~D~a~Vfvng~~vG~~~~~~~~~~~~~~~~i~-l~~ 542 (848)
.+..+.++++.|++|||++|...+.+. ... |.+. +.+.+++|||||+++|...... .++.+|.+|.. |+.
T Consensus 24 ~l~~~~~g~~~g~~~Yrg~F~~~~~~~------~~~~l~~~~g~~~~~~vwVNG~~~G~~~~~~-g~q~tf~~p~~il~~ 96 (111)
T PF13364_consen 24 VLYASDYGFHAGYLWYRGTFTGTGQDT------SLTPLNIQGGNAFRASVWVNGWFLGSYWPGI-GPQTTFSVPAGILKY 96 (111)
T ss_dssp STCCGCGTSSSCEEEEEEEEETTTEEE------EEE-EEECSSTTEEEEEEETTEEEEEEETTT-ECCEEEEE-BTTBTT
T ss_pred eeccCccccCCCCEEEEEEEeCCCcce------eEEEEeccCCCceEEEEEECCEEeeeecCCC-CccEEEEeCceeecC
Confidence 455566677999999999997543321 234 4554 6899999999999999987332 23355666653 555
Q ss_pred CCcEEEEEEeccCc
Q 003095 543 GKNTFDLLSLTVGL 556 (848)
Q Consensus 543 g~~~L~ILven~Gr 556 (848)
+.++|.+|+.+||.
T Consensus 97 ~n~v~~vl~~~~g~ 110 (111)
T PF13364_consen 97 GNNVLVVLWDNMGH 110 (111)
T ss_dssp CEEEEEEEEE-STT
T ss_pred CCEEEEEEEeCCCC
Confidence 67788999999995
No 16
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=98.07 E-value=1e-05 Score=87.00 Aligned_cols=116 Identities=25% Similarity=0.401 Sum_probs=86.2
Q ss_pred cCccCCcCceeeecCcchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCcccCcCCCeeeecCChhhHHHHHHHHHHH
Q 003095 79 WNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKI 158 (848)
Q Consensus 79 Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~VilrpGPYicaEw~~GG~P~WL~~~p~~~~Rt~d~~y~~~v~~~~~~l 158 (848)
|...||+||+|||+ .++++++.|+++||.| |..+-+ |.. ..|.|+...+ .+..++++++|++.+
T Consensus 3 W~~~ep~~G~~n~~---~~D~~~~~a~~~gi~v--~gH~l~---W~~-~~P~W~~~~~-------~~~~~~~~~~~i~~v 66 (254)
T smart00633 3 WDSTEPSRGQFNFS---GADAIVNFAKENGIKV--RGHTLV---WHS-QTPDWVFNLS-------KETLLARLENHIKTV 66 (254)
T ss_pred cccccCCCCccChH---HHHHHHHHHHHCCCEE--EEEEEe---ecc-cCCHhhhcCC-------HHHHHHHHHHHHHHH
Confidence 89999999999999 8999999999999998 332222 433 6899987432 335677888888888
Q ss_pred HHHHhhcccccccCCceEeeccccccccccc------cc-CcccHHHHHHHHHHHhhcCCCcceEEec
Q 003095 159 VDMMKQEKLYASQGGPIILSQIENEYGNIDS------AY-GAAGKSYIKWAAGMALSLDTGVPWVMCQ 219 (848)
Q Consensus 159 ~~~l~~~~~~~~~gGpII~~QiENEyg~~~~------~~-~~~~~~y~~~l~~~~~~~g~~vp~~~~~ 219 (848)
+.+++ |.|..|+|-||.-+... .| ...+.+|+...-+.+|+..-++.++.++
T Consensus 67 ~~ry~---------g~i~~wdV~NE~~~~~~~~~~~~~w~~~~G~~~i~~af~~ar~~~P~a~l~~Nd 125 (254)
T smart00633 67 VGRYK---------GKIYAWDVVNEALHDNGSGLRRSVWYQILGEDYIEKAFRYAREADPDAKLFYND 125 (254)
T ss_pred HHHhC---------CcceEEEEeeecccCCCcccccchHHHhcChHHHHHHHHHHHHhCCCCEEEEec
Confidence 87764 56999999999643210 11 1134578888888888887777777765
No 17
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=98.05 E-value=3.2e-05 Score=77.20 Aligned_cols=99 Identities=30% Similarity=0.371 Sum_probs=70.2
Q ss_pred CCCcceEEEEEEEecCCCCccccCCCceEEEeCCcceEEEEEECCEEEEEEeccCCCCeeEEeeeeccCCCC-cEEEEEE
Q 003095 473 ADQSDYLWYSLSTNIKADEPLLEDGSKTVLHVQSLGHALHAFINGKLVGSGYGSSSNAKVTVDFPIALAPGK-NTFDLLS 551 (848)
Q Consensus 473 ~d~~Gyl~Y~t~i~~~~~~~~~~~~~~~~L~i~~~~D~a~Vfvng~~vG~~~~~~~~~~~~~~~~i~l~~g~-~~L~ILv 551 (848)
....|+.|||++|.++... ++....|.+.++.+.+.|||||+++|...+.. ..+.++++--++.|. |+|.|.|
T Consensus 64 ~~~~~~~wYr~~f~lp~~~----~~~~~~L~f~gv~~~a~v~vNG~~vg~~~~~~--~~~~~dIt~~l~~g~~N~l~V~v 137 (167)
T PF02837_consen 64 WDYSGYAWYRRTFTLPADW----KGKRVFLRFEGVDYAAEVYVNGKLVGSHEGGY--TPFEFDITDYLKPGEENTLAVRV 137 (167)
T ss_dssp STCCSEEEEEEEEEESGGG----TTSEEEEEESEEESEEEEEETTEEEEEEESTT--S-EEEECGGGSSSEEEEEEEEEE
T ss_pred cccCceEEEEEEEEeCchh----cCceEEEEeccceEeeEEEeCCeEEeeeCCCc--CCeEEeChhhccCCCCEEEEEEE
Confidence 4478999999999886432 34567899999999999999999999986543 235556554577887 9999999
Q ss_pred eccCcccccCCc-cccCCccccceEEc
Q 003095 552 LTVGLQNYGAFY-EKTGAGITGPVQLK 577 (848)
Q Consensus 552 en~Gr~NyG~~~-~~~~kGI~g~V~l~ 577 (848)
.+...-.+-+.+ .-...||.++|.|-
T Consensus 138 ~~~~~~~~~~~~~~~~~~GI~r~V~L~ 164 (167)
T PF02837_consen 138 DNWPDGSTIPGFDYFNYAGIWRPVWLE 164 (167)
T ss_dssp ESSSGGGCGBSSSEEE--EEESEEEEE
T ss_pred eecCCCceeecCcCCccCccccEEEEE
Confidence 865544331111 12468999998873
No 18
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=97.94 E-value=9.3e-05 Score=80.79 Aligned_cols=156 Identities=16% Similarity=0.169 Sum_probs=84.1
Q ss_pred ccCCeeEEEecceEE--ECCEEeEEEEEEeeCCCC-----------CcccHHHHHHHHHhCCCCEEEEccccCccCCcCc
Q 003095 21 TSFGANVTYDHRAVV--IGGKRRVLISGSIHYPRS-----------TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRN 87 (848)
Q Consensus 21 ~~~~~~v~~d~~~f~--~dG~p~~~~sG~~Hy~R~-----------~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G 87 (848)
++.-..|++.++.|. .+|++|+|.+-.+.+--. .++.|++++..||++|+|||++|-
T Consensus 5 ~~~~~pI~ikG~kff~~~~g~~F~ikGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY~---------- 74 (314)
T PF03198_consen 5 AAAVPPIEIKGNKFFYSKNGTRFFIKGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVYS---------- 74 (314)
T ss_dssp STTS--EEEETTEEEETTT--B--EEEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES-----------
T ss_pred hccCCCEEEECCEeEECCCCCEEEEeeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEEE----------
Confidence 344566899999999 799999999887776322 467899999999999999999962
Q ss_pred eeeecCcchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCcccCcCCCeeeecCCh--hhHH-HHHHHHHHHHHHHhh
Q 003095 88 QYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLHFIPGIQFRTDNE--PFKA-EMQRFTAKIVDMMKQ 164 (848)
Q Consensus 88 ~ydF~g~~dl~~fl~la~~~GL~VilrpGPYicaEw~~GG~P~WL~~~p~~~~Rt~d~--~y~~-~v~~~~~~l~~~l~~ 164 (848)
-+-..|-++++++.+++|+||||-.+. |...+-..+| .|-. ..++|+ +++..+++
T Consensus 75 ---vdp~~nHd~CM~~~~~aGIYvi~Dl~~------------------p~~sI~r~~P~~sw~~~l~~~~~-~vid~fa~ 132 (314)
T PF03198_consen 75 ---VDPSKNHDECMSAFADAGIYVILDLNT------------------PNGSINRSDPAPSWNTDLLDRYF-AVIDAFAK 132 (314)
T ss_dssp -----TTS--HHHHHHHHHTT-EEEEES-B------------------TTBS--TTS------HHHHHHHH-HHHHHHTT
T ss_pred ---eCCCCCHHHHHHHHHhCCCEEEEecCC------------------CCccccCCCCcCCCCHHHHHHHH-HHHHHhcc
Confidence 233358899999999999999998642 2222222445 4422 233333 34455554
Q ss_pred cccccccCCceEeecccccccccccccC--cccHHHHHHHHHHHhhcCC-Ccce
Q 003095 165 EKLYASQGGPIILSQIENEYGNIDSAYG--AAGKSYIKWAAGMALSLDT-GVPW 215 (848)
Q Consensus 165 ~~~~~~~gGpII~~QiENEyg~~~~~~~--~~~~~y~~~l~~~~~~~g~-~vp~ 215 (848)
+ .+++++=+-||--....... +.-|+.++-+|+-.++.+. .+|+
T Consensus 133 Y-------~N~LgFf~GNEVin~~~~t~aap~vKAavRD~K~Yi~~~~~R~IPV 179 (314)
T PF03198_consen 133 Y-------DNTLGFFAGNEVINDASNTNAAPYVKAAVRDMKAYIKSKGYRSIPV 179 (314)
T ss_dssp --------TTEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS----E
T ss_pred C-------CceEEEEecceeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCce
Confidence 4 37999999999864211101 1234444555555555554 4553
No 19
>PLN02705 beta-amylase
Probab=97.84 E-value=4.1e-05 Score=88.77 Aligned_cols=82 Identities=17% Similarity=0.264 Sum_probs=63.2
Q ss_pred CcccHHHHHHHHHhCCCCEEEEccccCccCC-cCceeeecCcchHHHHHHHHHHcCcEEEEecCcccccccCCC-----C
Q 003095 54 TPEMWPDLIQKSKDGGLDVIETYVFWNLHEP-VRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFG-----G 127 (848)
Q Consensus 54 ~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp-~~G~ydF~g~~dl~~fl~la~~~GL~VilrpGPYicaEw~~G-----G 127 (848)
.++.-+..|+++|++|+..|.+-|.|.+.|. .|++|||+| ..++++++++.||++.+-..=--|+- +-| -
T Consensus 266 ~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~YdWsg---Y~~L~~mvr~~GLKlqvVmSFHqCGG-NVGD~~~IP 341 (681)
T PLN02705 266 DPEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYVWSG---YRELFNIIREFKLKLQVVMAFHEYGG-NASGNVMIS 341 (681)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEeeccCC-CCCCccccc
Confidence 3455788999999999999999999999998 699999996 67779999999999643332233443 112 2
Q ss_pred CCcccCc----CCCee
Q 003095 128 FPLWLHF----IPGIQ 139 (848)
Q Consensus 128 ~P~WL~~----~p~~~ 139 (848)
||.|+.. +|+|-
T Consensus 342 LP~WV~e~g~~nPDif 357 (681)
T PLN02705 342 LPQWVLEIGKDNQDIF 357 (681)
T ss_pred CCHHHHHhcccCCCce
Confidence 8999975 56763
No 20
>PLN02905 beta-amylase
Probab=97.79 E-value=5.6e-05 Score=87.90 Aligned_cols=81 Identities=22% Similarity=0.445 Sum_probs=62.4
Q ss_pred cccHHHHHHHHHhCCCCEEEEccccCccCC-cCceeeecCcchHHHHHHHHHHcCcEEEEecCcccccccCCC-----CC
Q 003095 55 PEMWPDLIQKSKDGGLDVIETYVFWNLHEP-VRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFG-----GF 128 (848)
Q Consensus 55 ~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp-~~G~ydF~g~~dl~~fl~la~~~GL~VilrpGPYicaEw~~G-----G~ 128 (848)
++.-+..|+++|++|+..|.+-|.|.+.|. .|++|||+| ..++++++++.||++.+-..=--|+- +-| -|
T Consensus 285 ~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~YdWsg---Y~~L~~mvr~~GLKlqvVMSFHqCGG-NVGD~~~IPL 360 (702)
T PLN02905 285 PDGLLKQLRILKSINVDGVKVDCWWGIVEAHAPQEYNWNG---YKRLFQMVRELKLKLQVVMSFHECGG-NVGDDVCIPL 360 (702)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeeeeeeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCC-CCCCcccccC
Confidence 344678999999999999999999999998 799999996 67779999999999654332233433 112 28
Q ss_pred CcccCc----CCCee
Q 003095 129 PLWLHF----IPGIQ 139 (848)
Q Consensus 129 P~WL~~----~p~~~ 139 (848)
|.|+.. +|+|.
T Consensus 361 P~WV~e~g~~nPDif 375 (702)
T PLN02905 361 PHWVAEIGRSNPDIF 375 (702)
T ss_pred CHHHHHhhhcCCCce
Confidence 999875 57763
No 21
>TIGR03356 BGL beta-galactosidase.
Probab=97.77 E-value=5.2e-05 Score=87.54 Aligned_cols=109 Identities=17% Similarity=0.106 Sum_probs=86.2
Q ss_pred ccHHHHHHHHHhCCCCEEEEccccCccCCc-CceeeecCcchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCcccCc
Q 003095 56 EMWPDLIQKSKDGGLDVIETYVFWNLHEPV-RNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLHF 134 (848)
Q Consensus 56 ~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~-~G~ydF~g~~dl~~fl~la~~~GL~VilrpGPYicaEw~~GG~P~WL~~ 134 (848)
..|+++|+.||++|+|++++-|.|...+|. +|++|.+|-...+++|+.+.++||.+|+-.=. =.+|.||.+
T Consensus 54 ~~y~eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~H--------fd~P~~l~~ 125 (427)
T TIGR03356 54 HRYEEDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLYH--------WDLPQALED 125 (427)
T ss_pred HhHHHHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeecc--------CCccHHHHh
Confidence 568999999999999999999999999999 79999988889999999999999998865411 247999976
Q ss_pred CCCeeeecCChhhHHHHHHHHHHHHHHHhhcccccccCCceEeeccccccc
Q 003095 135 IPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYG 185 (848)
Q Consensus 135 ~p~~~~Rt~d~~y~~~v~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg 185 (848)
..+- .++...++..+|.+.+++++++ .|-.|-.=||..
T Consensus 126 ~gGw----~~~~~~~~f~~ya~~~~~~~~d---------~v~~w~t~NEp~ 163 (427)
T TIGR03356 126 RGGW----LNRDTAEWFAEYAAVVAERLGD---------RVKHWITLNEPW 163 (427)
T ss_pred cCCC----CChHHHHHHHHHHHHHHHHhCC---------cCCEEEEecCcc
Confidence 5442 3466667777777777776652 345556667765
No 22
>PLN02801 beta-amylase
Probab=97.76 E-value=6.9e-05 Score=85.84 Aligned_cols=81 Identities=25% Similarity=0.458 Sum_probs=62.9
Q ss_pred CcccHHHHHHHHHhCCCCEEEEccccCccCC-cCceeeecCcchHHHHHHHHHHcCcEEEEecCcccccccCCC-----C
Q 003095 54 TPEMWPDLIQKSKDGGLDVIETYVFWNLHEP-VRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFG-----G 127 (848)
Q Consensus 54 ~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp-~~G~ydF~g~~dl~~fl~la~~~GL~VilrpGPYicaEw~~G-----G 127 (848)
.++.-+..|+++|++|+..|.+.|.|.+.|. .|++|||+| ..+++++++++||++.+-..=--|+- +-| -
T Consensus 35 ~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGG-NVGD~~~Ip 110 (517)
T PLN02801 35 DEEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYDWSA---YRSLFELVQSFGLKIQAIMSFHQCGG-NVGDAVNIP 110 (517)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccCcHH---HHHHHHHHHHcCCeEEEEEEecccCC-CCCCccccc
Confidence 4556789999999999999999999999998 599999996 67779999999999643332233432 111 2
Q ss_pred CCcccCc----CCCe
Q 003095 128 FPLWLHF----IPGI 138 (848)
Q Consensus 128 ~P~WL~~----~p~~ 138 (848)
||.|+.+ +|++
T Consensus 111 LP~WV~~~g~~~pDi 125 (517)
T PLN02801 111 IPQWVRDVGDSDPDI 125 (517)
T ss_pred CCHHHHHhhccCCCc
Confidence 8999874 5666
No 23
>PLN02803 beta-amylase
Probab=97.74 E-value=8.2e-05 Score=85.61 Aligned_cols=81 Identities=23% Similarity=0.486 Sum_probs=62.3
Q ss_pred cccHHHHHHHHHhCCCCEEEEccccCccCC-cCceeeecCcchHHHHHHHHHHcCcEEEEecCcccccccCCC-----CC
Q 003095 55 PEMWPDLIQKSKDGGLDVIETYVFWNLHEP-VRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFG-----GF 128 (848)
Q Consensus 55 ~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp-~~G~ydF~g~~dl~~fl~la~~~GL~VilrpGPYicaEw~~G-----G~ 128 (848)
++.-+..|+++|++|+..|.+.|.|.+.|. .|++|||+| ..+++++++++||++.+-..=--|+- +-| -|
T Consensus 106 ~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGG-NVGD~~~IpL 181 (548)
T PLN02803 106 PRAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYNWEG---YAELVQMVQKHGLKLQVVMSFHQCGG-NVGDSCSIPL 181 (548)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCC-CCCCcccccC
Confidence 344677999999999999999999999998 599999996 67779999999999654332233433 111 28
Q ss_pred CcccCc----CCCee
Q 003095 129 PLWLHF----IPGIQ 139 (848)
Q Consensus 129 P~WL~~----~p~~~ 139 (848)
|.|+.+ +|+|.
T Consensus 182 P~WV~e~~~~~pDi~ 196 (548)
T PLN02803 182 PPWVLEEMSKNPDLV 196 (548)
T ss_pred CHHHHHhhhcCCCce
Confidence 999875 57764
No 24
>PLN00197 beta-amylase; Provisional
Probab=97.74 E-value=8.4e-05 Score=85.74 Aligned_cols=82 Identities=23% Similarity=0.430 Sum_probs=63.7
Q ss_pred CcccHHHHHHHHHhCCCCEEEEccccCccCC-cCceeeecCcchHHHHHHHHHHcCcEEEEecCcccccccCCC-----C
Q 003095 54 TPEMWPDLIQKSKDGGLDVIETYVFWNLHEP-VRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFG-----G 127 (848)
Q Consensus 54 ~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp-~~G~ydF~g~~dl~~fl~la~~~GL~VilrpGPYicaEw~~G-----G 127 (848)
.++.-+..|+++|++|+..|.+.|.|.+.|. .|++|||+| ..+++++++++||++.+-..=--|+- +-| -
T Consensus 125 ~~~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~YdWsg---Y~~L~~mvr~~GLKlq~VmSFHqCGG-NVGD~~~Ip 200 (573)
T PLN00197 125 RRKAMKASLQALKSAGVEGIMMDVWWGLVERESPGVYNWGG---YNELLEMAKRHGLKVQAVMSFHQCGG-NVGDSCTIP 200 (573)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCC-CCCCccccc
Confidence 4556789999999999999999999999998 799999996 67779999999999654332233433 112 2
Q ss_pred CCcccCc----CCCee
Q 003095 128 FPLWLHF----IPGIQ 139 (848)
Q Consensus 128 ~P~WL~~----~p~~~ 139 (848)
||.|+.. +|++-
T Consensus 201 LP~WV~~~g~~dpDif 216 (573)
T PLN00197 201 LPKWVVEEVDKDPDLA 216 (573)
T ss_pred CCHHHHHhhccCCCce
Confidence 8999875 57763
No 25
>PLN02161 beta-amylase
Probab=97.66 E-value=0.00016 Score=82.88 Aligned_cols=82 Identities=22% Similarity=0.387 Sum_probs=62.7
Q ss_pred cccHHHHHHHHHhCCCCEEEEccccCccCC-cCceeeecCcchHHHHHHHHHHcCcEEEEecCcccccccCCC-----CC
Q 003095 55 PEMWPDLIQKSKDGGLDVIETYVFWNLHEP-VRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFG-----GF 128 (848)
Q Consensus 55 ~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp-~~G~ydF~g~~dl~~fl~la~~~GL~VilrpGPYicaEw~~G-----G~ 128 (848)
++.-+..|+++|++|+..|.+.|.|.+.|. .|++|||+| ..++++++++.||++.+-..=--|+- +-| -|
T Consensus 116 ~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGG-NvGd~~~IpL 191 (531)
T PLN02161 116 LKALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFKWSL---YEELFRLISEAGLKLHVALCFHSNMH-LFGGKGGISL 191 (531)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCC-CCCCccCccC
Confidence 445677999999999999999999999998 799999996 67779999999999654332233332 111 27
Q ss_pred CcccCc----CCCeee
Q 003095 129 PLWLHF----IPGIQF 140 (848)
Q Consensus 129 P~WL~~----~p~~~~ 140 (848)
|.|+.+ +|+|.+
T Consensus 192 P~WV~~~g~~~pDi~f 207 (531)
T PLN02161 192 PLWIREIGDVNKDIYY 207 (531)
T ss_pred CHHHHhhhccCCCceE
Confidence 999875 577643
No 26
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=97.37 E-value=0.00085 Score=73.67 Aligned_cols=226 Identities=20% Similarity=0.236 Sum_probs=110.2
Q ss_pred cceEE-ECCEEeEEEEEEee--CCCCCcccHHHHHHHHHhCCCCEEEEccc--cCcc--------CC----cCceeeecC
Q 003095 31 HRAVV-IGGKRRVLISGSIH--YPRSTPEMWPDLIQKSKDGGLDVIETYVF--WNLH--------EP----VRNQYNFEG 93 (848)
Q Consensus 31 ~~~f~-~dG~p~~~~sG~~H--y~R~~~~~W~d~l~k~ka~GlNtV~~yv~--Wn~h--------Ep----~~G~ydF~g 93 (848)
++.|. -||+||+.++=... ..|...+.|+.-|+..|+-|||+|++=++ |.-+ .| .++.+||+.
T Consensus 2 ~r~f~~~dG~Pff~lgdT~W~~~~~~~~~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~ 81 (289)
T PF13204_consen 2 GRHFVYADGTPFFWLGDTAWSLFHRLTREEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTR 81 (289)
T ss_dssp SSSEEETTS-B--EEEEE-TTHHHH--HHHHHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT
T ss_pred CceEecCCCCEEeehhHHHHHHhhCCCHHHHHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCC
Confidence 45566 79999999984433 23578899999999999999999998766 3322 11 223377775
Q ss_pred c-----chHHHHHHHHHHcCcEEEEec---CcccccccCCCCCCcccCcCCCeeeecCChhhHHHHHHHHHHHHHHHhhc
Q 003095 94 R-----YDLVKFVKLVAEAGLYAHLRI---GPYVCAEWNFGGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQE 165 (848)
Q Consensus 94 ~-----~dl~~fl~la~~~GL~Vilrp---GPYicaEw~~GG~P~WL~~~p~~~~Rt~d~~y~~~v~~~~~~l~~~l~~~ 165 (848)
- ..+++.|+.|.+.||.+-|-| +||+-+-|-+| ...| =.+.+++|.+.|+++++.+
T Consensus 82 ~N~~YF~~~d~~i~~a~~~Gi~~~lv~~wg~~~~~~~Wg~~--------~~~m--------~~e~~~~Y~~yv~~Ry~~~ 145 (289)
T PF13204_consen 82 PNPAYFDHLDRRIEKANELGIEAALVPFWGCPYVPGTWGFG--------PNIM--------PPENAERYGRYVVARYGAY 145 (289)
T ss_dssp ----HHHHHHHHHHHHHHTT-EEEEESS-HHHHH---------------TTSS---------HHHHHHHHHHHHHHHTT-
T ss_pred CCHHHHHHHHHHHHHHHHCCCeEEEEEEECCcccccccccc--------ccCC--------CHHHHHHHHHHHHHHHhcC
Confidence 4 489999999999999975533 23333334332 1111 1367889999999999865
Q ss_pred ccccccCCceEeecccccccccccccCcccHHHHHHHHHHHhhcCCCcc-eEEecCC-CCC-----C-----ccccCCCC
Q 003095 166 KLYASQGGPIILSQIENEYGNIDSAYGAAGKSYIKWAAGMALSLDTGVP-WVMCQQS-DAP-----D-----PIINTCNG 233 (848)
Q Consensus 166 ~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp-~~~~~~~-~~~-----~-----~~~~~~ng 233 (848)
+ +|| |=|-||+. ......++.+.+.+.+++..-.-+ .++..+. ..+ . ..+.+.+.
T Consensus 146 ~-------Nvi-W~l~gd~~-----~~~~~~~~w~~~~~~i~~~dp~~L~T~H~~~~~~~~~~~~~~~Wldf~~~Qsgh~ 212 (289)
T PF13204_consen 146 P-------NVI-WILGGDYF-----DTEKTRADWDAMARGIKENDPYQLITIHPCGRTSSPDWFHDEPWLDFNMYQSGHN 212 (289)
T ss_dssp S-------SEE-EEEESSS-------TTSSHHHHHHHHHHHHHH--SS-EEEEE-BTEBTHHHHTT-TT--SEEEB--S-
T ss_pred C-------CCE-EEecCccC-----CCCcCHHHHHHHHHHHHhhCCCCcEEEeCCCCCCcchhhcCCCcceEEEeecCCC
Confidence 3 466 55899991 123567777788887777532212 2222211 010 0 01111111
Q ss_pred ccc-Cc-------cC-CCCCCCCeeeeec-ccccccccCCCCCCCCHHHHHHHHHHHHHcCC
Q 003095 234 FYC-DQ-------FT-PNSNNKPKMWTEN-WSGWFLSFGGAVPYRPVEDLAFAVARFFQRGG 285 (848)
Q Consensus 234 ~~~-~~-------~~-~~~p~~P~~~~E~-~~Gwf~~wG~~~~~~~~~~~~~~~~~~l~~g~ 285 (848)
... +. .. ...|.+|.++.|- |.|--..+.......+++++...+=.-+-+|+
T Consensus 213 ~~~~~~~~~~~~~~~~~~~p~KPvin~Ep~YEg~~~~~~~~~~~~~~~dvrr~aw~svlaGa 274 (289)
T PF13204_consen 213 RYDQDNWYYLPEEFDYRRKPVKPVINGEPCYEGIPYSRWGYNGRFSAEDVRRRAWWSVLAGA 274 (289)
T ss_dssp -TT--THHHH--HHHHTSSS---EEESS---BT-BTTSS-TS-B--HHHHHHHHHHHHHCT-
T ss_pred cccchHHHHHhhhhhhhhCCCCCEEcCcccccCCCCCcCcccCCCCHHHHHHHHHHHHhcCC
Confidence 111 11 11 4568999999997 34433332223345577777665444444455
No 27
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=97.36 E-value=0.00023 Score=80.21 Aligned_cols=115 Identities=19% Similarity=0.303 Sum_probs=73.1
Q ss_pred cHHHHHHHHHhCCCCEEEEccccCccCCc-CceeeecCcchHHHHHHHHHHcCcEEEEecCcccccc----cCCCCCCcc
Q 003095 57 MWPDLIQKSKDGGLDVIETYVFWNLHEPV-RNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAE----WNFGGFPLW 131 (848)
Q Consensus 57 ~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~-~G~ydF~g~~dl~~fl~la~~~GL~VilrpGPYicaE----w~~GG~P~W 131 (848)
.-+..|+++|++|+..|.+.|.|.+.|.+ |++|||+| .+++++++++.||++.+-..=--|+- .-+=-||.|
T Consensus 17 ~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~ydWs~---Y~~l~~~vr~~GLk~~~vmsfH~cGgNvgD~~~IpLP~W 93 (402)
T PF01373_consen 17 ALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQQYDWSG---YRELFEMVRDAGLKLQVVMSFHQCGGNVGDDCNIPLPSW 93 (402)
T ss_dssp HHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB---HH---HHHHHHHHHHTT-EEEEEEE-S-BSSSTTSSSEB-S-HH
T ss_pred HHHHHHHHHHHcCCcEEEEEeEeeeeccCCCCccCcHH---HHHHHHHHHHcCCeEEEEEeeecCCCCCCCccCCcCCHH
Confidence 45778999999999999999999999997 99999995 77889999999999754332223321 111137999
Q ss_pred cCc---CCCeeeec--------------CChhhHHHHHHHHHHHHHHHhhcccccccCCceEeeccc
Q 003095 132 LHF---IPGIQFRT--------------DNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIE 181 (848)
Q Consensus 132 L~~---~p~~~~Rt--------------~d~~y~~~v~~~~~~l~~~l~~~~~~~~~gGpII~~QiE 181 (848)
+.. ..+|.... .... ++.-+.|++.....++ +++ +.|..+||-
T Consensus 94 v~~~~~~~di~ytd~~G~rn~E~lSp~~~grt-~~~Y~dfm~sF~~~f~--~~~----~~I~~I~vg 153 (402)
T PF01373_consen 94 VWEIGKKDDIFYTDRSGNRNKEYLSPVLDGRT-LQCYSDFMRSFRDNFS--DYL----STITEIQVG 153 (402)
T ss_dssp HHHHHHHSGGEEE-TTS-EEEEEE-CTBTTBC-HHHHHHHHHHHHHHCH--HHH----TGEEEEEE-
T ss_pred HHhccccCCcEEECCCCCcCcceeecccCCch-HHHHHHHHHHHHHHHH--HHH----hhheEEEec
Confidence 973 22542211 0112 5666666666666666 332 678888863
No 28
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=97.01 E-value=0.001 Score=74.09 Aligned_cols=158 Identities=18% Similarity=0.257 Sum_probs=108.1
Q ss_pred EEEEEeeCCCCCcccHHHHHHHHHhCCCCEEEEc--cccCccCCcCceeeecCcchHHHHHHHHHHcCcEEEEecCcccc
Q 003095 43 LISGSIHYPRSTPEMWPDLIQKSKDGGLDVIETY--VFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVC 120 (848)
Q Consensus 43 ~~sG~~Hy~R~~~~~W~d~l~k~ka~GlNtV~~y--v~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~VilrpGPYic 120 (848)
.+|.+++..++..+. ..+.+-..-+|.|..- .-|...||++|+|||+ ..+++++.|+++||.|--.+ -+
T Consensus 11 ~~G~av~~~~~~~~~---~~~~~~~~~Fn~~t~eN~~Kw~~~e~~~g~~~~~---~~D~~~~~a~~~g~~vrGH~--Lv- 81 (320)
T PF00331_consen 11 PFGAAVNAQQLEDDP---RYRELFAKHFNSVTPENEMKWGSIEPEPGRFNFE---SADAILDWARENGIKVRGHT--LV- 81 (320)
T ss_dssp EEEEEEBGGGHTHHH---HHHHHHHHH-SEEEESSTTSHHHHESBTTBEE-H---HHHHHHHHHHHTT-EEEEEE--EE-
T ss_pred CEEEEechhHcCCcH---HHHHHHHHhCCeeeeccccchhhhcCCCCccCcc---chhHHHHHHHhcCcceeeee--EE-
Confidence 688999987765442 3444445568888874 6699999999999999 89999999999999975332 11
Q ss_pred cccCCCCCCcccCcCCCeeeecCChhhHHHHHHHHHHHHHHHhhcccccccCCceEeeccccccccccc---------cc
Q 003095 121 AEWNFGGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGNIDS---------AY 191 (848)
Q Consensus 121 aEw~~GG~P~WL~~~p~~~~Rt~d~~y~~~v~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~---------~~ 191 (848)
|.. ..|.|+...+... ....+...+.++++++.++.++++ -|.|.+|-|=||-=.... .+
T Consensus 82 --W~~-~~P~w~~~~~~~~-~~~~~~~~~~l~~~I~~v~~~y~~-------~g~i~~WDVvNE~i~~~~~~~~~r~~~~~ 150 (320)
T PF00331_consen 82 --WHS-QTPDWVFNLANGS-PDEKEELRARLENHIKTVVTRYKD-------KGRIYAWDVVNEAIDDDGNPGGLRDSPWY 150 (320)
T ss_dssp --ESS-SS-HHHHTSTTSS-BHHHHHHHHHHHHHHHHHHHHTTT-------TTTESEEEEEES-B-TTSSSSSBCTSHHH
T ss_pred --Ecc-cccceeeeccCCC-cccHHHHHHHHHHHHHHHHhHhcc-------ccceEEEEEeeecccCCCccccccCChhh
Confidence 544 7899998651100 000124788899999999888762 189999999999743211 11
Q ss_pred CcccHHHHHHHHHHHhhcCCCcceEEecC
Q 003095 192 GAAGKSYIKWAAGMALSLDTGVPWVMCQQ 220 (848)
Q Consensus 192 ~~~~~~y~~~l~~~~~~~g~~vp~~~~~~ 220 (848)
...+.+|+...-+.+++...++.+|.++-
T Consensus 151 ~~lG~~yi~~aF~~A~~~~P~a~L~~NDy 179 (320)
T PF00331_consen 151 DALGPDYIADAFRAAREADPNAKLFYNDY 179 (320)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTSEEEEEES
T ss_pred hcccHhHHHHHHHHHHHhCCCcEEEeccc
Confidence 12346789888888888877888888774
No 29
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=96.88 E-value=0.011 Score=59.95 Aligned_cols=135 Identities=11% Similarity=0.148 Sum_probs=81.6
Q ss_pred CCCCcccHHHHHHHHHhCCCCEEEEccccCccC-----Cc---CceeeecCcchHHHHHHHHHHcCcEEEEecCcccccc
Q 003095 51 PRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHE-----PV---RNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAE 122 (848)
Q Consensus 51 ~R~~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hE-----p~---~G~ydF~g~~dl~~fl~la~~~GL~VilrpGPYicaE 122 (848)
..++++.|+.+|+.||++|+++|=+- |...+ |. ++.|.-....-|+.+|++|++.||+|.+..+ -
T Consensus 15 ~~~~~~~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~--~--- 87 (166)
T PF14488_consen 15 QNWTPAQWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLY--F--- 87 (166)
T ss_pred cCCCHHHHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCC--C---
Confidence 47899999999999999999998421 22111 11 2233334455899999999999999998753 1
Q ss_pred cCCCCCCcccCcCCCeeeecCChhhH-HHHHHHHHHHHHHHhhcccccccCCceEeecccccccccccccCcccHHHHHH
Q 003095 123 WNFGGFPLWLHFIPGIQFRTDNEPFK-AEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGNIDSAYGAAGKSYIKW 201 (848)
Q Consensus 123 w~~GG~P~WL~~~p~~~~Rt~d~~y~-~~v~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~ 201 (848)
-|.|..+ .|+... +.-++..++|..+ |++....-+|=|-.|..... + ...++.+.
T Consensus 88 -----~~~~w~~--------~~~~~~~~~~~~v~~el~~~-------yg~h~sf~GWYip~E~~~~~--~--~~~~~~~~ 143 (166)
T PF14488_consen 88 -----DPDYWDQ--------GDLDWEAERNKQVADELWQR-------YGHHPSFYGWYIPYEIDDYN--W--NAPERFAL 143 (166)
T ss_pred -----Cchhhhc--------cCHHHHHHHHHHHHHHHHHH-------HcCCCCCceEEEecccCCcc--c--chHHHHHH
Confidence 2333331 222221 1112233333333 34445777888888887531 2 34667777
Q ss_pred HHHHHhhcCCCcceE
Q 003095 202 AAGMALSLDTGVPWV 216 (848)
Q Consensus 202 l~~~~~~~g~~vp~~ 216 (848)
|.+.+++.--+-|++
T Consensus 144 l~~~lk~~s~~~Pv~ 158 (166)
T PF14488_consen 144 LGKYLKQISPGKPVM 158 (166)
T ss_pred HHHHHHHhCCCCCeE
Confidence 777776643344543
No 30
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=96.70 E-value=0.0083 Score=65.74 Aligned_cols=133 Identities=21% Similarity=0.291 Sum_probs=98.7
Q ss_pred HHhCCCCEEEEccccCccCCcCceeeecCcchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCcccCcCCCeeeecCC
Q 003095 65 SKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLHFIPGIQFRTDN 144 (848)
Q Consensus 65 ~ka~GlNtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~VilrpGPYicaEw~~GG~P~WL~~~p~~~~Rt~d 144 (848)
.|+.+.=|-+.-.=|+..||++|.|+|+ --++..+.|+++||.+ |-=+.| |-+ -.|.|+..+. -+-
T Consensus 55 ~re~n~iTpenemKwe~i~p~~G~f~Fe---~AD~ia~FAr~h~m~l--hGHtLv---W~~-q~P~W~~~~e-----~~~ 120 (345)
T COG3693 55 ARECNQITPENEMKWEAIEPERGRFNFE---AADAIANFARKHNMPL--HGHTLV---WHS-QVPDWLFGDE-----LSK 120 (345)
T ss_pred HhhhcccccccccccccccCCCCccCcc---chHHHHHHHHHcCCee--ccceee---ecc-cCCchhhccc-----cCh
Confidence 4555555555666699999999999999 5789999999999964 322233 444 5889997643 245
Q ss_pred hhhHHHHHHHHHHHHHHHhhcccccccCCceEeecccccccccc----c---ccCcccHHHHHHHHHHHhhcCCCcceEE
Q 003095 145 EPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGNID----S---AYGAAGKSYIKWAAGMALSLDTGVPWVM 217 (848)
Q Consensus 145 ~~y~~~v~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~----~---~~~~~~~~y~~~l~~~~~~~g~~vp~~~ 217 (848)
++.++.+++++..++.+.+ |-|+.|-|=||-=... . ..+..+.+|+++.-+.+|+.+-+--++.
T Consensus 121 ~~~~~~~e~hI~tV~~rYk---------g~~~sWDVVNE~vdd~g~~R~s~w~~~~~gpd~I~~aF~~AreadP~AkL~~ 191 (345)
T COG3693 121 EALAKMVEEHIKTVVGRYK---------GSVASWDVVNEAVDDQGSLRRSAWYDGGTGPDYIKLAFHIAREADPDAKLVI 191 (345)
T ss_pred HHHHHHHHHHHHHHHHhcc---------CceeEEEecccccCCCchhhhhhhhccCCccHHHHHHHHHHHhhCCCceEEe
Confidence 7789999999999999987 4599999999974321 1 1113567999999999999776666777
Q ss_pred ecC
Q 003095 218 CQQ 220 (848)
Q Consensus 218 ~~~ 220 (848)
++-
T Consensus 192 NDY 194 (345)
T COG3693 192 NDY 194 (345)
T ss_pred ecc
Confidence 664
No 31
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=96.57 E-value=0.0035 Score=62.51 Aligned_cols=66 Identities=29% Similarity=0.486 Sum_probs=49.6
Q ss_pred CCceEEEEEEECCCCC--CCeEEeeCCC-ceEEEEECCeeeeecccccccCCCCCCCCCCcCCCcCccccccCCCCCcce
Q 003095 623 QPLVWYKTTFDAPAGS--EPVAIDFTGM-GKGEAWVNGQSIGRYWPTYVSQNGGCTDSCNYRGAYSSNKCLKNCGKPSQS 699 (848)
Q Consensus 623 ~~~~~Yk~~F~~p~~~--d~~~Ld~~g~-gKG~vwVNG~nlGRYW~~~~g~~~g~~~~c~y~g~~~~~~c~~~c~gPqqt 699 (848)
.+..|||++|++|+.. ..++|.+.|. ....|||||+.+|+-.. +-...
T Consensus 67 ~~~~wYr~~f~lp~~~~~~~~~L~f~gv~~~a~v~vNG~~vg~~~~-----------------------------~~~~~ 117 (167)
T PF02837_consen 67 SGYAWYRRTFTLPADWKGKRVFLRFEGVDYAAEVYVNGKLVGSHEG-----------------------------GYTPF 117 (167)
T ss_dssp CSEEEEEEEEEESGGGTTSEEEEEESEEESEEEEEETTEEEEEEES-----------------------------TTS-E
T ss_pred CceEEEEEEEEeCchhcCceEEEEeccceEeeEEEeCCeEEeeeCC-----------------------------CcCCe
Confidence 4679999999999642 4689999987 58999999999999652 11223
Q ss_pred eeccCccccccCC-ceEEEE
Q 003095 700 LYHVPRSWLKSSG-NTLVLF 718 (848)
Q Consensus 700 lYhVP~~~Lk~g~-N~lvvf 718 (848)
-+-|+. .|+.|. |+|.|.
T Consensus 118 ~~dIt~-~l~~g~~N~l~V~ 136 (167)
T PF02837_consen 118 EFDITD-YLKPGEENTLAVR 136 (167)
T ss_dssp EEECGG-GSSSEEEEEEEEE
T ss_pred EEeChh-hccCCCCEEEEEE
Confidence 344765 788888 988873
No 32
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=96.55 E-value=0.0018 Score=75.51 Aligned_cols=109 Identities=17% Similarity=0.188 Sum_probs=78.8
Q ss_pred ccHHHHHHHHHhCCCCEEEEccccCccCCc--CceeeecCcchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCcccC
Q 003095 56 EMWPDLIQKSKDGGLDVIETYVFWNLHEPV--RNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLH 133 (848)
Q Consensus 56 ~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~--~G~ydF~g~~dl~~fl~la~~~GL~VilrpGPYicaEw~~GG~P~WL~ 133 (848)
..|+++|+.||++|+|+.++-|.|.-.+|. +|++|-.|....+++|+.++++||..|+-. ---.+|.||.
T Consensus 58 ~~y~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL--------~H~~~P~~l~ 129 (455)
T PF00232_consen 58 HRYKEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTL--------YHFDLPLWLE 129 (455)
T ss_dssp HHHHHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEE--------ESS--BHHHH
T ss_pred hhhhHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeee--------eeccccccee
Confidence 469999999999999999999999999999 699999999999999999999999976543 1345899998
Q ss_pred cCCCeeeecCChhhHHHHHHHHHHHHHHHhhcccccccCCceEeeccccccc
Q 003095 134 FIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYG 185 (848)
Q Consensus 134 ~~p~~~~Rt~d~~y~~~v~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg 185 (848)
+.-+- .++...+...+|.+.+++++.+ -|-.|-.=||..
T Consensus 130 ~~ggw----~~~~~~~~F~~Ya~~~~~~~gd---------~V~~w~T~NEp~ 168 (455)
T PF00232_consen 130 DYGGW----LNRETVDWFARYAEFVFERFGD---------RVKYWITFNEPN 168 (455)
T ss_dssp HHTGG----GSTHHHHHHHHHHHHHHHHHTT---------TBSEEEEEETHH
T ss_pred ecccc----cCHHHHHHHHHHHHHHHHHhCC---------CcceEEeccccc
Confidence 74442 2466667777777777777753 144444556654
No 33
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=96.54 E-value=0.0065 Score=69.93 Aligned_cols=118 Identities=11% Similarity=0.067 Sum_probs=72.0
Q ss_pred CcccH-----HHHHHHHHhCCCCEEEEccccCccCCc----CceeeecCcchHHHHHHHHHHcCcEEEEecCcccccccC
Q 003095 54 TPEMW-----PDLIQKSKDGGLDVIETYVFWNLHEPV----RNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWN 124 (848)
Q Consensus 54 ~~~~W-----~d~l~k~ka~GlNtV~~yv~Wn~hEp~----~G~ydF~g~~dl~~fl~la~~~GL~VilrpGPYicaEw~ 124 (848)
....| ++.+..||.+|||+||+++.|..+++. |...+=+--..|++.|+.|++.||+|+|-.-=| +.-
T Consensus 66 ~~~~w~~~~~~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~---~~~ 142 (407)
T COG2730 66 LESHWGNFITEEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGY---PGG 142 (407)
T ss_pred chhccchhhhhhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEeccc---CCC
Confidence 56668 999999999999999999994444553 333312212378999999999999999863110 000
Q ss_pred -CCCCCcccCcCCCeeeecCChhhHHHHHHHHHHHHHHHhhcccccccCCceEeecccccccc
Q 003095 125 -FGGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGN 186 (848)
Q Consensus 125 -~GG~P~WL~~~p~~~~Rt~d~~y~~~v~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~ 186 (848)
++--..|.... . ......+++..+-+..|+.+.+ +.-.||++|+=||.-.
T Consensus 143 ~~~~~~s~~~~~--~---~~~~~~~~~~~~~w~~ia~~f~-------~~~~VIg~~~~NEP~~ 193 (407)
T COG2730 143 NNGHEHSGYTSD--Y---KEENENVEATIDIWKFIANRFK-------NYDTVIGFELINEPNG 193 (407)
T ss_pred CCCcCccccccc--c---cccchhHHHHHHHHHHHHHhcc-------CCCceeeeeeecCCcc
Confidence 01111232211 0 0112233444444445544444 4568999999999974
No 34
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=96.45 E-value=0.0065 Score=67.87 Aligned_cols=104 Identities=26% Similarity=0.467 Sum_probs=65.1
Q ss_pred HHHHHHHHhCCCCEEEEccccCccCCcC-ceeeecCcchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCcccCcCCC
Q 003095 59 PDLIQKSKDGGLDVIETYVFWNLHEPVR-NQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLHFIPG 137 (848)
Q Consensus 59 ~d~l~k~ka~GlNtV~~yv~Wn~hEp~~-G~ydF~g~~dl~~fl~la~~~GL~VilrpGPYicaEw~~GG~P~WL~~~p~ 137 (848)
+|.|+-||+.|+|.||.=| |+ .|.. |..|.+ +..+..+-|+++||.|+|-+- |. -.|- +|+
T Consensus 27 ~d~~~ilk~~G~N~vRlRv-wv--~P~~~g~~~~~---~~~~~akrak~~Gm~vlldfH-YS---------D~Wa--DPg 88 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV-WV--NPYDGGYNDLE---DVIALAKRAKAAGMKVLLDFH-YS---------DFWA--DPG 88 (332)
T ss_dssp --HHHHHHHTT--EEEEEE--S--S-TTTTTTSHH---HHHHHHHHHHHTT-EEEEEE--SS---------SS----BTT
T ss_pred CCHHHHHHhcCCCeEEEEe-cc--CCcccccCCHH---HHHHHHHHHHHCCCeEEEeec-cc---------CCCC--CCC
Confidence 6899999999999999988 54 4544 544444 555556666789999998763 32 1232 122
Q ss_pred ee-----eec-CChhhHHHHHHHHHHHHHHHhhcccccccCCceEeecccccccc
Q 003095 138 IQ-----FRT-DNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGN 186 (848)
Q Consensus 138 ~~-----~Rt-~d~~y~~~v~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~ 186 (848)
-. .+. +-..-.++|..|.+.++..|++ +|=.+=||||-||...
T Consensus 89 ~Q~~P~aW~~~~~~~l~~~v~~yT~~vl~~l~~------~G~~pd~VQVGNEin~ 137 (332)
T PF07745_consen 89 KQNKPAAWANLSFDQLAKAVYDYTKDVLQALKA------AGVTPDMVQVGNEINN 137 (332)
T ss_dssp B-B--TTCTSSSHHHHHHHHHHHHHHHHHHHHH------TT--ESEEEESSSGGG
T ss_pred CCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHH------CCCCccEEEeCccccc
Confidence 11 111 3355678999999999999984 4567889999999864
No 35
>PRK10150 beta-D-glucuronidase; Provisional
Probab=96.32 E-value=0.024 Score=68.49 Aligned_cols=100 Identities=23% Similarity=0.237 Sum_probs=67.6
Q ss_pred CCcceEEEEEEEecCCCCccccCCCceEEEeCCcceEEEEEECCEEEEEEeccCCCCeeEEeeeeccCCCC-cEEEEEEe
Q 003095 474 DQSDYLWYSLSTNIKADEPLLEDGSKTVLHVQSLGHALHAFINGKLVGSGYGSSSNAKVTVDFPIALAPGK-NTFDLLSL 552 (848)
Q Consensus 474 d~~Gyl~Y~t~i~~~~~~~~~~~~~~~~L~i~~~~D~a~Vfvng~~vG~~~~~~~~~~~~~~~~i~l~~g~-~~L~ILve 552 (848)
+..|..|||++|.++... .+....|.+.++.-.+.|||||++||...+.. ..+.+++.--++.|. |+|.|.|.
T Consensus 62 ~~~G~~WYrr~f~lp~~~----~gk~v~L~Fegv~~~a~V~lNG~~vg~~~~~~--~~f~~DIT~~l~~G~~n~L~V~v~ 135 (604)
T PRK10150 62 NYVGDVWYQREVFIPKGW----AGQRIVLRFGSVTHYAKVWVNGQEVMEHKGGY--TPFEADITPYVYAGKSVRITVCVN 135 (604)
T ss_pred CCcccEEEEEEEECCccc----CCCEEEEEECcccceEEEEECCEEeeeEcCCc--cceEEeCchhccCCCceEEEEEEe
Confidence 357899999999886431 24568899999999999999999999876532 234455443466674 49999997
Q ss_pred ccCcc---cccCCcc--------------ccCCccccceEEccc
Q 003095 553 TVGLQ---NYGAFYE--------------KTGAGITGPVQLKGS 579 (848)
Q Consensus 553 n~Gr~---NyG~~~~--------------~~~kGI~g~V~l~g~ 579 (848)
|.-+. ..|...+ -...||..+|.|.-.
T Consensus 136 n~~~~~~~p~g~~~~~~~~~~k~~~~~d~~~~~GI~r~V~L~~~ 179 (604)
T PRK10150 136 NELNWQTLPPGNVIEDGNGKKKQKYNFDFFNYAGIHRPVMLYTT 179 (604)
T ss_pred cCCCcccCCCCccccCCccccccccccccccccCCCceEEEEEc
Confidence 74221 0111000 135899999998543
No 36
>PLN02998 beta-glucosidase
Probab=96.04 E-value=0.0053 Score=72.28 Aligned_cols=100 Identities=16% Similarity=0.183 Sum_probs=72.8
Q ss_pred cccHHHHHHHHHhCCCCEEEEccccCccCCc-CceeeecCcchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCcccC
Q 003095 55 PEMWPDLIQKSKDGGLDVIETYVFWNLHEPV-RNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLH 133 (848)
Q Consensus 55 ~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~-~G~ydF~g~~dl~~fl~la~~~GL~VilrpGPYicaEw~~GG~P~WL~ 133 (848)
-..|+++++.||++|+|+-++-|.|+-.+|. .|.+|-+|...-+++|+.+.++||..++-.= =| -+|.||.
T Consensus 81 Yhry~EDi~lmk~lG~~~YRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~-----H~---dlP~~L~ 152 (497)
T PLN02998 81 YHKYKEDVKLMADMGLEAYRFSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLH-----HF---DLPQALE 152 (497)
T ss_pred HHhhHHHHHHHHHcCCCeEEeeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEec-----CC---CCCHHHH
Confidence 3568999999999999999999999999996 6788989999999999999999998665430 13 3699997
Q ss_pred cC-CCeeeecCChhhHHHHHHHHHHHHHHH
Q 003095 134 FI-PGIQFRTDNEPFKAEMQRFTAKIVDMM 162 (848)
Q Consensus 134 ~~-p~~~~Rt~d~~y~~~v~~~~~~l~~~l 162 (848)
.. -+-.=|..=..|.++++..++++..++
T Consensus 153 ~~yGGW~n~~~v~~F~~YA~~~~~~fgdrV 182 (497)
T PLN02998 153 DEYGGWLSQEIVRDFTAYADTCFKEFGDRV 182 (497)
T ss_pred HhhCCcCCchHHHHHHHHHHHHHHHhcCcC
Confidence 63 553112112334555555555444444
No 37
>PLN02849 beta-glucosidase
Probab=95.98 E-value=0.0096 Score=70.24 Aligned_cols=101 Identities=18% Similarity=0.217 Sum_probs=73.4
Q ss_pred cccHHHHHHHHHhCCCCEEEEccccCccCCc-CceeeecCcchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCcccC
Q 003095 55 PEMWPDLIQKSKDGGLDVIETYVFWNLHEPV-RNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLH 133 (848)
Q Consensus 55 ~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~-~G~ydF~g~~dl~~fl~la~~~GL~VilrpGPYicaEw~~GG~P~WL~ 133 (848)
...|+++++.||++|+|+-++-|.|.-.+|. .|.+|=.|...-+++|+.+.++||.-++-.= =| -+|.||.
T Consensus 78 YhrY~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~-----H~---dlP~~L~ 149 (503)
T PLN02849 78 YHKYKEDVKLMVETGLDAFRFSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLF-----HY---DHPQYLE 149 (503)
T ss_pred HHhHHHHHHHHHHcCCCeEEEeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeec-----CC---CCcHHHH
Confidence 3468999999999999999999999999996 4778888999999999999999999665420 13 3799997
Q ss_pred cC-CCeeeecCChhhHHHHHHHHHHHHHHHh
Q 003095 134 FI-PGIQFRTDNEPFKAEMQRFTAKIVDMMK 163 (848)
Q Consensus 134 ~~-p~~~~Rt~d~~y~~~v~~~~~~l~~~l~ 163 (848)
+. -+-.=|..=..|.++++..++++..+++
T Consensus 150 ~~yGGW~nr~~v~~F~~YA~~~f~~fgDrVk 180 (503)
T PLN02849 150 DDYGGWINRRIIKDFTAYADVCFREFGNHVK 180 (503)
T ss_pred HhcCCcCCchHHHHHHHHHHHHHHHhcCcCC
Confidence 63 4421121123455555555555544443
No 38
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=95.88 E-value=0.034 Score=71.05 Aligned_cols=95 Identities=20% Similarity=0.286 Sum_probs=66.8
Q ss_pred cceEEEEEEEecCCCCccccCCCceEEEeCCcceEEEEEECCEEEEEEeccCCCCeeEEeeeeccCCCCcEEEEEEeccC
Q 003095 476 SDYLWYSLSTNIKADEPLLEDGSKTVLHVQSLGHALHAFINGKLVGSGYGSSSNAKVTVDFPIALAPGKNTFDLLSLTVG 555 (848)
Q Consensus 476 ~Gyl~Y~t~i~~~~~~~~~~~~~~~~L~i~~~~D~a~Vfvng~~vG~~~~~~~~~~~~~~~~i~l~~g~~~L~ILven~G 555 (848)
.|-.|||++|.++..- .+....|.+.++...+.|||||++||...+.. ..+.+++.--++.|.|+|.|.|.+..
T Consensus 108 n~~g~Yrr~F~lp~~~----~gkrv~L~FeGV~s~a~VwvNG~~VG~~~g~~--~pfefDIT~~l~~G~N~LaV~V~~~~ 181 (1021)
T PRK10340 108 NPTGAYQRTFTLSDGW----QGKQTIIKFDGVETYFEVYVNGQYVGFSKGSR--LTAEFDISAMVKTGDNLLCVRVMQWA 181 (1021)
T ss_pred CCeEEEEEEEEeCccc----ccCcEEEEECccceEEEEEECCEEeccccCCC--ccEEEEcchhhCCCccEEEEEEEecC
Confidence 3567999999886432 24467899999999999999999999865432 23455544346778899999886432
Q ss_pred cccccCCccc----cCCccccceEEccc
Q 003095 556 LQNYGAFYEK----TGAGITGPVQLKGS 579 (848)
Q Consensus 556 r~NyG~~~~~----~~kGI~g~V~l~g~ 579 (848)
.|..++. ...||..+|.|--.
T Consensus 182 ---d~s~le~qd~w~~sGI~R~V~L~~~ 206 (1021)
T PRK10340 182 ---DSTYLEDQDMWWLAGIFRDVYLVGK 206 (1021)
T ss_pred ---CCCccccCCccccccccceEEEEEe
Confidence 2333332 23799999998543
No 39
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=95.88 E-value=0.022 Score=66.92 Aligned_cols=97 Identities=16% Similarity=0.129 Sum_probs=75.4
Q ss_pred cccHHHHHHHHHhCCCCEEEEccccCccCCc--CceeeecCcchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCccc
Q 003095 55 PEMWPDLIQKSKDGGLDVIETYVFWNLHEPV--RNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWL 132 (848)
Q Consensus 55 ~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~--~G~ydF~g~~dl~~fl~la~~~GL~VilrpGPYicaEw~~GG~P~WL 132 (848)
...|+++++.||++|+|+-++-|.|.-..|. +|++|-.|....+++|+.+.++||..++-. .- =.+|.||
T Consensus 68 Yhry~EDI~Lm~elG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL-------~H-~dlP~~L 139 (477)
T PRK15014 68 YGHYKEDIKLFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITL-------SH-FEMPLHL 139 (477)
T ss_pred ccccHHHHHHHHHcCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe-------eC-CCCCHHH
Confidence 3468999999999999999999999999997 567888899999999999999999977643 11 2479999
Q ss_pred CcC-CCeeeecCChhhHHHHHHHHHHHHHHHh
Q 003095 133 HFI-PGIQFRTDNEPFKAEMQRFTAKIVDMMK 163 (848)
Q Consensus 133 ~~~-p~~~~Rt~d~~y~~~v~~~~~~l~~~l~ 163 (848)
... -+- .++...++-.+|.+.++++++
T Consensus 140 ~~~yGGW----~n~~~~~~F~~Ya~~~f~~fg 167 (477)
T PRK15014 140 VQQYGSW----TNRKVVDFFVRFAEVVFERYK 167 (477)
T ss_pred HHhcCCC----CChHHHHHHHHHHHHHHHHhc
Confidence 753 442 345555666666666666654
No 40
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=95.85 E-value=0.02 Score=67.15 Aligned_cols=97 Identities=13% Similarity=0.125 Sum_probs=72.8
Q ss_pred cccHHHHHHHHHhCCCCEEEEccccCccCCc--CceeeecCcchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCccc
Q 003095 55 PEMWPDLIQKSKDGGLDVIETYVFWNLHEPV--RNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWL 132 (848)
Q Consensus 55 ~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~--~G~ydF~g~~dl~~fl~la~~~GL~VilrpGPYicaEw~~GG~P~WL 132 (848)
-..|+++++.||++|+|+.++-+.|.-.+|. ++++|-+|-...+++|+.+.++||.+++-. --=.+|.||
T Consensus 70 Yhry~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL--------~H~~~P~~l 141 (474)
T PRK09852 70 YHRYKEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTL--------CHFDVPMHL 141 (474)
T ss_pred hhhhHHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------eCCCCCHHH
Confidence 3457999999999999999999999999997 566788888899999999999999976543 122489998
Q ss_pred CcC-CCeeeecCChhhHHHHHHHHHHHHHHHh
Q 003095 133 HFI-PGIQFRTDNEPFKAEMQRFTAKIVDMMK 163 (848)
Q Consensus 133 ~~~-p~~~~Rt~d~~y~~~v~~~~~~l~~~l~ 163 (848)
... -+- .++...++..+|.+.++++++
T Consensus 142 ~~~~GGW----~~~~~~~~F~~ya~~~~~~fg 169 (474)
T PRK09852 142 VTEYGSW----RNRKMVEFFSRYARTCFEAFD 169 (474)
T ss_pred HHhcCCC----CCHHHHHHHHHHHHHHHHHhc
Confidence 753 442 244444555555555555544
No 41
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=95.84 E-value=0.0097 Score=69.87 Aligned_cols=100 Identities=14% Similarity=0.128 Sum_probs=74.3
Q ss_pred ccHHHHHHHHHhCCCCEEEEccccCccCCc--CceeeecCcchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCcccC
Q 003095 56 EMWPDLIQKSKDGGLDVIETYVFWNLHEPV--RNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLH 133 (848)
Q Consensus 56 ~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~--~G~ydF~g~~dl~~fl~la~~~GL~VilrpGPYicaEw~~GG~P~WL~ 133 (848)
..|+++++.||++|+|+-++-|.|+-.+|. +|++|=.|-..-+++|+.+.++||..++-. . =| -+|.||.
T Consensus 73 hry~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL---~--H~---dlP~~L~ 144 (478)
T PRK09593 73 HHYKEDIALFAEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTI---T--HF---DCPMHLI 144 (478)
T ss_pred HhhHHHHHHHHHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe---c--cc---CCCHHHH
Confidence 568999999999999999999999999997 667888888999999999999999866542 0 13 3799997
Q ss_pred cC-CCeeeecCChhhHHHHHHHHHHHHHHHh
Q 003095 134 FI-PGIQFRTDNEPFKAEMQRFTAKIVDMMK 163 (848)
Q Consensus 134 ~~-p~~~~Rt~d~~y~~~v~~~~~~l~~~l~ 163 (848)
.. -+-.=|..=..|.++++..++++..+++
T Consensus 145 ~~~GGW~n~~~v~~F~~YA~~~~~~fgdrVk 175 (478)
T PRK09593 145 EEYGGWRNRKMVGFYERLCRTLFTRYKGLVK 175 (478)
T ss_pred hhcCCCCChHHHHHHHHHHHHHHHHhcCcCC
Confidence 53 4531121123455556555666555554
No 42
>PLN02814 beta-glucosidase
Probab=95.84 E-value=0.0073 Score=71.25 Aligned_cols=110 Identities=16% Similarity=0.199 Sum_probs=79.6
Q ss_pred cccHHHHHHHHHhCCCCEEEEccccCccCCc-CceeeecCcchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCcccC
Q 003095 55 PEMWPDLIQKSKDGGLDVIETYVFWNLHEPV-RNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLH 133 (848)
Q Consensus 55 ~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~-~G~ydF~g~~dl~~fl~la~~~GL~VilrpGPYicaEw~~GG~P~WL~ 133 (848)
...|+++++.||++|+|+-++-|.|.-.+|. +|.+|-+|...-+++|+.+.++||..++-. . =|+ +|.||.
T Consensus 76 Yhry~EDI~L~k~lG~~ayRfSIsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL---~--H~d---lP~~L~ 147 (504)
T PLN02814 76 YHKYKEDVKLMAEMGLESFRFSISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTL---Y--HYD---LPQSLE 147 (504)
T ss_pred HHhhHHHHHHHHHcCCCEEEEeccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEe---c--CCC---CCHHHH
Confidence 3568999999999999999999999999996 688999999999999999999999866543 0 143 699998
Q ss_pred cC-CCeeeecCChhhHHHHHHHHHHHHHHHhhcccccccCCceEeeccccccc
Q 003095 134 FI-PGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYG 185 (848)
Q Consensus 134 ~~-p~~~~Rt~d~~y~~~v~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg 185 (848)
+. -+- .++...++-.+|.+.+++++. +-|-.|--=||..
T Consensus 148 ~~yGGW----~n~~~i~~F~~YA~~~f~~fg---------drVk~WiT~NEP~ 187 (504)
T PLN02814 148 DEYGGW----INRKIIEDFTAFADVCFREFG---------EDVKLWTTINEAT 187 (504)
T ss_pred HhcCCc----CChhHHHHHHHHHHHHHHHhC---------CcCCEEEeccccc
Confidence 63 442 233344444444444444443 2344555567765
No 43
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=95.75 E-value=0.057 Score=69.03 Aligned_cols=96 Identities=24% Similarity=0.352 Sum_probs=64.8
Q ss_pred cceEEEEEEEecCCCCccccCCCceEEEeCCcceEEEEEECCEEEEEEeccCCCCeeEEeeeeccCCCCcEEEEEEeccC
Q 003095 476 SDYLWYSLSTNIKADEPLLEDGSKTVLHVQSLGHALHAFINGKLVGSGYGSSSNAKVTVDFPIALAPGKNTFDLLSLTVG 555 (848)
Q Consensus 476 ~Gyl~Y~t~i~~~~~~~~~~~~~~~~L~i~~~~D~a~Vfvng~~vG~~~~~~~~~~~~~~~~i~l~~g~~~L~ILven~G 555 (848)
.+-.|||++|.++.+ |..+ .+..|.+.++.-.+.|||||+++|...+.. ..+.+++.--++.|.|+|.|.|..-
T Consensus 119 n~~gwYrr~F~vp~~--w~~~-~rv~L~FeGV~~~a~VwvNG~~VG~~~g~~--~pfefDIT~~l~~G~N~L~V~V~~~- 192 (1027)
T PRK09525 119 NPTGCYSLTFTVDES--WLQS-GQTRIIFDGVNSAFHLWCNGRWVGYSQDSR--LPAEFDLSPFLRAGENRLAVMVLRW- 192 (1027)
T ss_pred CCeEEEEEEEEeChh--hcCC-CeEEEEECeeccEEEEEECCEEEEeecCCC--ceEEEEChhhhcCCccEEEEEEEec-
Confidence 467899999988643 1111 147899999999999999999999865432 2345554434677889999987421
Q ss_pred cccccCCccc----cCCccccceEEccc
Q 003095 556 LQNYGAFYEK----TGAGITGPVQLKGS 579 (848)
Q Consensus 556 r~NyG~~~~~----~~kGI~g~V~l~g~ 579 (848)
.-|..+++ ...||..+|.|--.
T Consensus 193 --sdgs~~e~qd~w~~sGI~R~V~L~~~ 218 (1027)
T PRK09525 193 --SDGSYLEDQDMWRMSGIFRDVSLLHK 218 (1027)
T ss_pred --CCCCccccCCceeeccccceEEEEEc
Confidence 12222322 23699999988443
No 44
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=95.48 E-value=0.038 Score=64.80 Aligned_cols=95 Identities=13% Similarity=0.141 Sum_probs=72.2
Q ss_pred ccHHHHHHHHHhCCCCEEEEccccCccCCc-CceeeecCcchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCcccCc
Q 003095 56 EMWPDLIQKSKDGGLDVIETYVFWNLHEPV-RNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLHF 134 (848)
Q Consensus 56 ~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~-~G~ydF~g~~dl~~fl~la~~~GL~VilrpGPYicaEw~~GG~P~WL~~ 134 (848)
..|+++++.||++|+|+-++-|.|+-.+|. .|.+|-.|...-+++|+.+.++||.-++-.= =| .+|.||.+
T Consensus 54 ~ry~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~-----H~---dlP~~L~~ 125 (469)
T PRK13511 54 HRYPEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLH-----HF---DTPEALHS 125 (469)
T ss_pred hhhHHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEec-----CC---CCcHHHHH
Confidence 458999999999999999999999999996 5788889999999999999999998665430 12 47999986
Q ss_pred CCCeeeecCChhhHHHHHHHHHHHHHHH
Q 003095 135 IPGIQFRTDNEPFKAEMQRFTAKIVDMM 162 (848)
Q Consensus 135 ~p~~~~Rt~d~~y~~~v~~~~~~l~~~l 162 (848)
.-+- .++...++..+|.+.+++++
T Consensus 126 ~GGW----~n~~~v~~F~~YA~~~~~~f 149 (469)
T PRK13511 126 NGDW----LNRENIDHFVRYAEFCFEEF 149 (469)
T ss_pred cCCC----CCHHHHHHHHHHHHHHHHHh
Confidence 5442 34444444455555554444
No 45
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=95.32 E-value=0.017 Score=67.87 Aligned_cols=101 Identities=16% Similarity=0.129 Sum_probs=73.5
Q ss_pred cccHHHHHHHHHhCCCCEEEEccccCccCCc--CceeeecCcchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCccc
Q 003095 55 PEMWPDLIQKSKDGGLDVIETYVFWNLHEPV--RNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWL 132 (848)
Q Consensus 55 ~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~--~G~ydF~g~~dl~~fl~la~~~GL~VilrpGPYicaEw~~GG~P~WL 132 (848)
-..|+++++.||++|+|+-++-|.|.-.+|. +|++|=.|-..-+++|+.+.++||..++-.= =| -+|.||
T Consensus 66 Yhry~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~-----H~---dlP~~L 137 (476)
T PRK09589 66 YHRYKEDIALFAEMGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLS-----HF---EMPYHL 137 (476)
T ss_pred HHhhHHHHHHHHHcCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEec-----CC---CCCHHH
Confidence 3568999999999999999999999999997 5678888889999999999999998665430 13 379999
Q ss_pred CcC-CCeeeecCChhhHHHHHHHHHHHHHHHh
Q 003095 133 HFI-PGIQFRTDNEPFKAEMQRFTAKIVDMMK 163 (848)
Q Consensus 133 ~~~-p~~~~Rt~d~~y~~~v~~~~~~l~~~l~ 163 (848)
... -+-.=|..=..|.++++..++++..+++
T Consensus 138 ~~~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk 169 (476)
T PRK09589 138 VTEYGGWRNRKLIDFFVRFAEVVFTRYKDKVK 169 (476)
T ss_pred HHhcCCcCChHHHHHHHHHHHHHHHHhcCCCC
Confidence 753 4531121123455555555555554444
No 46
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=95.20 E-value=0.055 Score=63.47 Aligned_cols=96 Identities=14% Similarity=0.116 Sum_probs=73.0
Q ss_pred cccHHHHHHHHHhCCCCEEEEccccCccCCc-CceeeecCcchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCcccC
Q 003095 55 PEMWPDLIQKSKDGGLDVIETYVFWNLHEPV-RNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLH 133 (848)
Q Consensus 55 ~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~-~G~ydF~g~~dl~~fl~la~~~GL~VilrpGPYicaEw~~GG~P~WL~ 133 (848)
-..|+++++.||++|+|+-++-|.|.-.+|. +|.+|=+|...-+++|+.+.++||..++-.= + | -+|.||.
T Consensus 52 yhry~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~---H--~---dlP~~L~ 123 (467)
T TIGR01233 52 YHKYPVDLELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLH---H--F---DTPEALH 123 (467)
T ss_pred hhhHHHHHHHHHHcCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEecc---C--C---CCcHHHH
Confidence 3468999999999999999999999999996 6788888999999999999999999766431 1 3 3799998
Q ss_pred cCCCeeeecCChhhHHHHHHHHHHHHHHH
Q 003095 134 FIPGIQFRTDNEPFKAEMQRFTAKIVDMM 162 (848)
Q Consensus 134 ~~p~~~~Rt~d~~y~~~v~~~~~~l~~~l 162 (848)
+.-+- .++...++-.+|.+.+++++
T Consensus 124 ~~GGW----~n~~~v~~F~~YA~~~f~~f 148 (467)
T TIGR01233 124 SNGDF----LNRENIEHFIDYAAFCFEEF 148 (467)
T ss_pred HcCCC----CCHHHHHHHHHHHHHHHHHh
Confidence 65442 24444444455555554444
No 47
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=95.09 E-value=0.094 Score=56.90 Aligned_cols=116 Identities=22% Similarity=0.238 Sum_probs=76.8
Q ss_pred HHHHHHHHHhCCCCEEEEccccCccCCcCceeeecCcchHHHHHHHHH---HcCcEEEEecCcccccccCCCCCCcccCc
Q 003095 58 WPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVA---EAGLYAHLRIGPYVCAEWNFGGFPLWLHF 134 (848)
Q Consensus 58 W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~---~~GL~VilrpGPYicaEw~~GG~P~WL~~ 134 (848)
=+|.|+-+|+.|+|.|+.-| ||.---.-|.=-=.|+.|+.+.+++|+ ..||+|++-.= |. .| =.-|+-- +
T Consensus 65 ~qD~~~iLK~~GvNyvRlRv-wndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFH-YS--Df--waDPakQ-~ 137 (403)
T COG3867 65 RQDALQILKNHGVNYVRLRV-WNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFH-YS--DF--WADPAKQ-K 137 (403)
T ss_pred HHHHHHHHHHcCcCeEEEEE-ecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeecc-ch--hh--ccChhhc-C
Confidence 47899999999999999865 665544445444457889999999986 46999999751 11 11 0011100 0
Q ss_pred CCCeeeecCChhhHHHHHHHHHHHHHHHhhcccccccCCceEeecccccccc
Q 003095 135 IPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGN 186 (848)
Q Consensus 135 ~p~~~~Rt~d~~y~~~v~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~ 186 (848)
.|.--..-+-..-.+++-.|.+..+..++++ |=-+=||||.||-.+
T Consensus 138 kPkaW~~l~fe~lk~avy~yTk~~l~~m~~e------Gi~pdmVQVGNEtn~ 183 (403)
T COG3867 138 KPKAWENLNFEQLKKAVYSYTKYVLTTMKKE------GILPDMVQVGNETNG 183 (403)
T ss_pred CcHHhhhcCHHHHHHHHHHHHHHHHHHHHHc------CCCccceEeccccCC
Confidence 1221111233455678888899998888854 556779999999864
No 48
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=94.62 E-value=0.17 Score=49.36 Aligned_cols=98 Identities=14% Similarity=0.121 Sum_probs=64.2
Q ss_pred HHHHHHHhCCCCEEEEccc----c-----CccCCcCceeeecCcchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCc
Q 003095 60 DLIQKSKDGGLDVIETYVF----W-----NLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPL 130 (848)
Q Consensus 60 d~l~k~ka~GlNtV~~yv~----W-----n~hEp~~G~ydF~g~~dl~~fl~la~~~GL~VilrpGPYicaEw~~GG~P~ 130 (848)
+-++.+|++|+|+|.++.- | ..|.+.|+- +..-|.++++.|++.||.|++|...- --|+..--.|.
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L----~~Dllge~v~a~h~~Girv~ay~~~~-~d~~~~~~HPe 78 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGL----KRDLLGEQVEACHERGIRVPAYFDFS-WDEDAAERHPE 78 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCC----CcCHHHHHHHHHHHCCCEEEEEEeee-cChHHHHhCCc
Confidence 3467889999999998432 2 244445544 12256999999999999999997654 33333445699
Q ss_pred ccCcCCCee-------------eecCChhhHHHHHHHHHHHHHHH
Q 003095 131 WLHFIPGIQ-------------FRTDNEPFKAEMQRFTAKIVDMM 162 (848)
Q Consensus 131 WL~~~p~~~-------------~Rt~d~~y~~~v~~~~~~l~~~l 162 (848)
|+..+++-+ .-..+..|++.+.+-+++++.+.
T Consensus 79 W~~~~~~G~~~~~~~~~~~~~~~~c~ns~Y~e~~~~~i~Ei~~~y 123 (132)
T PF14871_consen 79 WFVRDADGRPMRGERFGYPGWYTCCLNSPYREFLLEQIREILDRY 123 (132)
T ss_pred eeeECCCCCCcCCCCcCCCCceecCCCccHHHHHHHHHHHHHHcC
Confidence 997644321 11234568877777777766544
No 49
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=94.27 E-value=0.031 Score=63.99 Aligned_cols=158 Identities=14% Similarity=0.135 Sum_probs=113.7
Q ss_pred eEEECCEEeEEEEEEeeCCCCCcccHHHHHHHHHhCCCCEEEEccccCcc-CC---cCceeee-cCcchHHHHHHHHHHc
Q 003095 33 AVVIGGKRRVLISGSIHYPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLH-EP---VRNQYNF-EGRYDLVKFVKLVAEA 107 (848)
Q Consensus 33 ~f~~dG~p~~~~sG~~Hy~R~~~~~W~d~l~k~ka~GlNtV~~yv~Wn~h-Ep---~~G~ydF-~g~~dl~~fl~la~~~ 107 (848)
.|.++++++..++..--+.++-.++-+++|+-|+-+|+++++. |-+- |+ ++|.-+- ++..-++.|++.|.++
T Consensus 3 ~F~Lg~n~wprIanikmw~~~~~~ei~~dle~a~~vg~k~lR~---fiLDgEdc~d~~G~~na~s~~~y~~~fla~a~~l 79 (587)
T COG3934 3 VFALGLNRWPRIANIKMWPAIGNREIKADLEPAGFVGVKDLRL---FILDGEDCRDKEGYRNAGSNVWYAAWFLAPAGYL 79 (587)
T ss_pred eEEeccccchhhhhhhHHHHhhhhhhhcccccccCccceeEEE---EEecCcchhhhhceecccccHHHHHHHhhhcccC
Confidence 4788888888888777778887778889999999999999999 4455 66 3343222 2345789999999999
Q ss_pred CcEEEEecCcccccccCCCCCC---cccCc-CCCeeeecCChhhHHHHHHHHHHHHHHHhhcccccccCCceEeeccccc
Q 003095 108 GLYAHLRIGPYVCAEWNFGGFP---LWLHF-IPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENE 183 (848)
Q Consensus 108 GL~VilrpGPYicaEw~~GG~P---~WL~~-~p~~~~Rt~d~~y~~~v~~~~~~l~~~l~~~~~~~~~gGpII~~QiENE 183 (848)
+|+|+++. |.+-=.+||.- .|.-. .|+-.+ .|+.++..-++|+..+++-.+ ....|.+|-+-||
T Consensus 80 ~lkvlitl---ivg~~hmgg~Nw~Ipwag~~~pdn~i--yD~k~~~~~kkyvedlVk~yk-------~~ptI~gw~l~Ne 147 (587)
T COG3934 80 DLKVLITL---IVGLKHMGGTNWRIPWAGEQSPDNVI--YDPKFRGPGKKYVEDLVKPYK-------LDPTIAGWALRNE 147 (587)
T ss_pred cceEEEEE---eecccccCcceeEeecCCCCCccccc--cchhhcccHHHHHHHHhhhhc-------cChHHHHHHhcCC
Confidence 99998874 66555677764 35532 344222 377777777888888766443 4568999999999
Q ss_pred ccccccccCcccHHHHHHHHHHHhh
Q 003095 184 YGNIDSAYGAAGKSYIKWAAGMALS 208 (848)
Q Consensus 184 yg~~~~~~~~~~~~y~~~l~~~~~~ 208 (848)
.-. .-...+..+++|+++|+.-
T Consensus 148 ~lv---~~p~s~N~f~~w~~emy~y 169 (587)
T COG3934 148 PLV---EAPISVNNFWDWSGEMYAY 169 (587)
T ss_pred ccc---cccCChhHHHHHHHHHHHH
Confidence 332 1123578999999999754
No 50
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=93.59 E-value=0.071 Score=61.67 Aligned_cols=101 Identities=19% Similarity=0.280 Sum_probs=72.1
Q ss_pred cccHHHHHHHHHhCCCCEEEEccccCccCCcCce--eeecCcchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCccc
Q 003095 55 PEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQ--YNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWL 132 (848)
Q Consensus 55 ~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~--ydF~g~~dl~~fl~la~~~GL~VilrpGPYicaEw~~GG~P~WL 132 (848)
-..++++++.||+||+|+.++-|.|+-.-|..+. .+=.|-...+++++.|.++|+.-++-.= =|+ +|.||
T Consensus 58 YhrYkeDi~L~~emG~~~~R~SI~WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL~-----Hfd---~P~~L 129 (460)
T COG2723 58 YHRYKEDIALAKEMGLNAFRTSIEWSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTLY-----HFD---LPLWL 129 (460)
T ss_pred hhhhHHHHHHHHHcCCCEEEeeeeEEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEec-----ccC---CcHHH
Confidence 3458999999999999999999999999996554 8888999999999999999999665431 133 59999
Q ss_pred CcC-CCeeeecCChhhHHHHHHHHHHHHHHHh
Q 003095 133 HFI-PGIQFRTDNEPFKAEMQRFTAKIVDMMK 163 (848)
Q Consensus 133 ~~~-p~~~~Rt~d~~y~~~v~~~~~~l~~~l~ 163 (848)
.+. -+=.=|..=..|.++.+-.|+++..+++
T Consensus 130 ~~~ygGW~nR~~i~~F~~ya~~vf~~f~dkVk 161 (460)
T COG2723 130 QKPYGGWENRETVDAFARYAATVFERFGDKVK 161 (460)
T ss_pred hhccCCccCHHHHHHHHHHHHHHHHHhcCcce
Confidence 875 3432222223344444444444444443
No 51
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=92.58 E-value=0.48 Score=55.92 Aligned_cols=140 Identities=21% Similarity=0.252 Sum_probs=73.7
Q ss_pred EEEeeCCCCCcccHHHHHHHHH-hCCCCEEEEccccCcc--------C-CcCc--eeeecCcchHHHHHHHHHHcCcEEE
Q 003095 45 SGSIHYPRSTPEMWPDLIQKSK-DGGLDVIETYVFWNLH--------E-PVRN--QYNFEGRYDLVKFVKLVAEAGLYAH 112 (848)
Q Consensus 45 sG~~Hy~R~~~~~W~d~l~k~k-a~GlNtV~~yv~Wn~h--------E-p~~G--~ydF~g~~dl~~fl~la~~~GL~Vi 112 (848)
-|+-|....-++.|+..|+.++ +.||..|++ |++. | ...| .|||+ .||.++|...+.||+-.
T Consensus 28 ~~~g~a~~~l~~~~q~~l~~~~~~~gf~yvR~---h~l~~ddm~~~~~~~~~~~~~Ynf~---~lD~i~D~l~~~g~~P~ 101 (486)
T PF01229_consen 28 VGSGRANLLLRADWQEQLRELQEELGFRYVRF---HGLFSDDMMVYSESDEDGIPPYNFT---YLDQILDFLLENGLKPF 101 (486)
T ss_dssp EEES-GGGGGBHHHHHHHHHHHCCS--SEEEE---S-TTSTTTT-EEEEETTEEEEE--H---HHHHHHHHHHHCT-EEE
T ss_pred cCCCchHHHhhHHHHHHHHHHHhccCceEEEE---EeeccCchhhccccccCCCCcCChH---HHHHHHHHHHHcCCEEE
Confidence 3444555567888999999997 679999998 5544 1 1233 39999 99999999999999987
Q ss_pred EecCcccccccCCCCCCcccCcCCCeeee--------cCChhhHHHHHHHHHHHHHHHhhcccccccCCceEeecccccc
Q 003095 113 LRIGPYVCAEWNFGGFPLWLHFIPGIQFR--------TDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEY 184 (848)
Q Consensus 113 lrpGPYicaEw~~GG~P~WL~~~p~~~~R--------t~d~~y~~~v~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEy 184 (848)
+..| =.|.++...+...+. .+...|.+.|+.+++++..+.....+ . --.++|.||.
T Consensus 102 vel~----------f~p~~~~~~~~~~~~~~~~~~pp~~~~~W~~lv~~~~~h~~~RYG~~ev--~----~W~fEiWNEP 165 (486)
T PF01229_consen 102 VELG----------FMPMALASGYQTVFWYKGNISPPKDYEKWRDLVRAFARHYIDRYGIEEV--S----TWYFEIWNEP 165 (486)
T ss_dssp EEE-----------SB-GGGBSS--EETTTTEE-S-BS-HHHHHHHHHHHHHHHHHHHHHHHH--T----TSEEEESS-T
T ss_pred EEEE----------echhhhcCCCCccccccCCcCCcccHHHHHHHHHHHHHHHHhhcCCccc--c----ceeEEeCcCC
Confidence 7664 245555432221111 12234555555555555444321110 0 0146899998
Q ss_pred cccccccC-cccHHHHHHHHHHHh
Q 003095 185 GNIDSAYG-AAGKSYIKWAAGMAL 207 (848)
Q Consensus 185 g~~~~~~~-~~~~~y~~~l~~~~~ 207 (848)
.... .+. ....+|.+.-+..++
T Consensus 166 d~~~-f~~~~~~~ey~~ly~~~~~ 188 (486)
T PF01229_consen 166 DLKD-FWWDGTPEEYFELYDATAR 188 (486)
T ss_dssp TSTT-TSGGG-HHHHHHHHHHHHH
T ss_pred Cccc-ccCCCCHHHHHHHHHHHHH
Confidence 7531 121 123457765554443
No 52
>PRK09936 hypothetical protein; Provisional
Probab=92.34 E-value=0.35 Score=52.84 Aligned_cols=58 Identities=22% Similarity=0.334 Sum_probs=47.2
Q ss_pred CCCCcccHHHHHHHHHhCCCCEEEEccccCccCCcCceeeecCc-chHHHHHHHHHHcCcEEEEe
Q 003095 51 PRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGR-YDLVKFVKLVAEAGLYAHLR 114 (848)
Q Consensus 51 ~R~~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~ydF~g~-~dl~~fl~la~~~GL~Vilr 114 (848)
.+++++.|+.+++.+|+.|++|+=+ =|.-- |.=||.|. -.|.+.++.|++.||.|++.
T Consensus 33 ~~~~~~qWq~~~~~~~~~G~~tLiv--QWt~y----G~~~fg~~~g~La~~l~~A~~~Gl~v~vG 91 (296)
T PRK09936 33 SQVTDTQWQGLWSQLRLQGFDTLVV--QWTRY----GDADFGGQRGWLAKRLAAAQQAGLKLVVG 91 (296)
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEE--Eeeec----cCCCcccchHHHHHHHHHHHHcCCEEEEc
Confidence 4689999999999999999999754 46543 11188765 48999999999999999885
No 53
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=92.07 E-value=0.5 Score=52.63 Aligned_cols=117 Identities=16% Similarity=0.210 Sum_probs=70.2
Q ss_pred CcccHHHHHHHHHhCCCCEEEEccccC-------ccCC-------cCcee-eecCcchHHHHHHHHHHcCcEEEEecCcc
Q 003095 54 TPEMWPDLIQKSKDGGLDVIETYVFWN-------LHEP-------VRNQY-NFEGRYDLVKFVKLVAEAGLYAHLRIGPY 118 (848)
Q Consensus 54 ~~~~W~d~l~k~ka~GlNtV~~yv~Wn-------~hEp-------~~G~y-dF~g~~dl~~fl~la~~~GL~VilrpGPY 118 (848)
.++.-++.|++++++|||+|=.-|-+. -.+| .+|.- .|+ -|+.+|+.|++.||.|..+. .+
T Consensus 17 ~~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~D---pL~~~I~eaHkrGlevHAW~-~~ 92 (311)
T PF02638_consen 17 SKEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFD---PLEFMIEEAHKRGLEVHAWF-RV 92 (311)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCcc---HHHHHHHHHHHcCCEEEEEE-Ee
Confidence 567788999999999999997554432 1112 11210 133 79999999999999998765 11
Q ss_pred cccccCC----CCCCcccC-cCCCeeeec----C-----ChhhHHHHHHHHHHHHHHHhhcccccccCCceEeecccc
Q 003095 119 VCAEWNF----GGFPLWLH-FIPGIQFRT----D-----NEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIEN 182 (848)
Q Consensus 119 icaEw~~----GG~P~WL~-~~p~~~~Rt----~-----d~~y~~~v~~~~~~l~~~l~~~~~~~~~gGpII~~QiEN 182 (848)
-...-.. -..|.|+. +.++..... . || -..+|++|+..++..|.+ .+ +|=++|++-
T Consensus 93 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP-~~PeVr~~i~~~v~Eiv~-~Y------dvDGIhlDd 162 (311)
T PF02638_consen 93 GFNAPDVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNP-GHPEVRDYIIDIVKEIVK-NY------DVDGIHLDD 162 (311)
T ss_pred ecCCCchhhhhhcCchhheecCCCceeecccCCCCceEECC-CCHHHHHHHHHHHHHHHh-cC------CCCeEEecc
Confidence 1110111 12478876 355532222 1 22 236788887777766542 12 366788773
No 54
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=91.34 E-value=2.7 Score=51.17 Aligned_cols=70 Identities=20% Similarity=0.142 Sum_probs=45.4
Q ss_pred EEeeCCCCCc-ccHH---HHH-HHHHhCCCCEEEE-ccccCccCC----cCc-----eeeecCcchHHHHHHHHHHcCcE
Q 003095 46 GSIHYPRSTP-EMWP---DLI-QKSKDGGLDVIET-YVFWNLHEP----VRN-----QYNFEGRYDLVKFVKLVAEAGLY 110 (848)
Q Consensus 46 G~~Hy~R~~~-~~W~---d~l-~k~ka~GlNtV~~-yv~Wn~hEp----~~G-----~ydF~g~~dl~~fl~la~~~GL~ 110 (848)
=|+|..-..+ --++ ++| .-+|++|+|+|+. .|+.+-... .+- .-.|.+..||.+|++.|+++||.
T Consensus 142 Ye~hv~~~~~~g~~~~i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~ 221 (613)
T TIGR01515 142 YELHLGSWRHGLSYRELADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIG 221 (613)
T ss_pred EEEehhhccCCCCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHCCCE
Confidence 4666533322 2243 354 6779999999997 676532111 000 11355567999999999999999
Q ss_pred EEEec
Q 003095 111 AHLRI 115 (848)
Q Consensus 111 Vilrp 115 (848)
|||-.
T Consensus 222 VilD~ 226 (613)
T TIGR01515 222 VILDW 226 (613)
T ss_pred EEEEe
Confidence 99874
No 55
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=91.04 E-value=0.86 Score=53.95 Aligned_cols=333 Identities=18% Similarity=0.281 Sum_probs=154.2
Q ss_pred EEeEEEEEEeeC------CCCCcccHHHHHHHH---HhCCCCEEEEccc--------cCccCCcCcee---eecCc----
Q 003095 39 KRRVLISGSIHY------PRSTPEMWPDLIQKS---KDGGLDVIETYVF--------WNLHEPVRNQY---NFEGR---- 94 (848)
Q Consensus 39 ~p~~~~sG~~Hy------~R~~~~~W~d~l~k~---ka~GlNtV~~yv~--------Wn~hEp~~G~y---dF~g~---- 94 (848)
|.+.=++|++=- .+.+++.=++.|+.+ +-+|++.+|+.|- +.+-+ .|+-| +|+=.
T Consensus 74 Q~i~GFGga~Tdasa~~l~~l~~~~r~~ll~~~F~~~G~g~s~~R~pIgssDfs~~~Yty~d-~~~D~~l~~Fs~~~~d~ 152 (496)
T PF02055_consen 74 QTIDGFGGAFTDASAYNLQKLSEEQRDELLRSLFSEDGIGYSLLRVPIGSSDFSTRPYTYDD-VPGDFNLSNFSIAREDK 152 (496)
T ss_dssp EE--EEEEE--HHHHHHHHTS-HHHHHHHHHHHHSTTTT---EEEEEES--SSSSS---ST--STTHTTTTT---HHHHH
T ss_pred eEEEEEeeeHHHHHHHHHHhCCHHHHHHHHHHHhhcCCceEEEEEeeccCcCCcCCcccccC-CCCCCccccCCccccch
Confidence 555667887732 234443323333333 4589999998876 33322 22322 12211
Q ss_pred chHHHHHHHHHHc--CcEEEEecCcccccccCCCCCCcccCcCCCe----eeec-CChhhHHHHHHHHHHHHHHHhhccc
Q 003095 95 YDLVKFVKLVAEA--GLYAHLRIGPYVCAEWNFGGFPLWLHFIPGI----QFRT-DNEPFKAEMQRFTAKIVDMMKQEKL 167 (848)
Q Consensus 95 ~dl~~fl~la~~~--GL~VilrpGPYicaEw~~GG~P~WL~~~p~~----~~Rt-~d~~y~~~v~~~~~~l~~~l~~~~~ 167 (848)
..+-.+|+.|++. +|+++.-| |. .|+|+.....+ .++. ..+.|.++..+||.+.++.++++
T Consensus 153 ~~~ip~ik~a~~~~~~lki~aSp-------WS---pP~WMKtn~~~~g~g~l~g~~~~~y~~~yA~Y~vkfi~aY~~~-- 220 (496)
T PF02055_consen 153 KYKIPLIKEALAINPNLKIFASP-------WS---PPAWMKTNGSMNGGGSLKGSLGDEYYQAYADYFVKFIQAYKKE-- 220 (496)
T ss_dssp TTHHHHHHHHHHHHTT-EEEEEE-------S------GGGBTTSSSCSS-BBSCGTTSHHHHHHHHHHHHHHHHHHCT--
T ss_pred hhHHHHHHHHHHhCCCcEEEEec-------CC---CCHHHccCCcCcCCCccCCCCCchhHHHHHHHHHHHHHHHHHC--
Confidence 1234578877764 57777665 42 79999763322 2442 35679899999999998888844
Q ss_pred ccccCCceEeecccccccccc---cccC-----c-ccHHHHH-HHHHHHhhcCC--CcceEEecCC--CCCC---cccc-
Q 003095 168 YASQGGPIILSQIENEYGNID---SAYG-----A-AGKSYIK-WAAGMALSLDT--GVPWVMCQQS--DAPD---PIIN- 229 (848)
Q Consensus 168 ~~~~gGpII~~QiENEyg~~~---~~~~-----~-~~~~y~~-~l~~~~~~~g~--~vp~~~~~~~--~~~~---~~~~- 229 (848)
|=+|-++-+.||..... ..|. + ..++|++ .|..++++.++ ++-++..+.. ..++ .++.
T Consensus 221 ----GI~i~aiT~QNEP~~~~~~~~~~~s~~~t~~~~~~Fi~~~LgP~l~~~~~g~d~kI~~~D~n~~~~~~~~~~il~d 296 (496)
T PF02055_consen 221 ----GIPIWAITPQNEPDNGSDPNYPWPSMGWTPEEQADFIKNYLGPALRKAGLGKDVKILIYDHNRDNLPDYADTILND 296 (496)
T ss_dssp ----T--ESEEESSSSCCGGGSTT-SSC--B--HHHHHHHHHHTHHHHHHTSTT-TTSEEEEEEEEGGGTTHHHHHHHTS
T ss_pred ----CCCeEEEeccCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCCcccchhhhhhhcC
Confidence 55899999999997421 0122 1 2467776 48889998876 6766655531 1221 1111
Q ss_pred -----CCC--Cccc---Cc-------cCCCCCCCCeeeeecccccccccCCCCCC---CCHHHHHHHHHHHHHcCCeeee
Q 003095 230 -----TCN--GFYC---DQ-------FTPNSNNKPKMWTENWSGWFLSFGGAVPY---RPVEDLAFAVARFFQRGGTFQN 289 (848)
Q Consensus 230 -----~~n--g~~~---~~-------~~~~~p~~P~~~~E~~~Gwf~~wG~~~~~---~~~~~~~~~~~~~l~~g~s~~n 289 (848)
.+. ++++ +. .....|++.++.||-..|.- .|+..... ..++..+..+..-|..+++ +
T Consensus 297 ~~A~~yv~GiA~HwY~g~~~~~~l~~~h~~~P~k~l~~TE~~~g~~-~~~~~~~~g~w~~~~~y~~~ii~~lnn~~~--g 373 (496)
T PF02055_consen 297 PEAAKYVDGIAFHWYGGDPSPQALDQVHNKFPDKFLLFTEACCGSW-NWDTSVDLGSWDRAERYAHDIIGDLNNWVS--G 373 (496)
T ss_dssp HHHHTTEEEEEEEETTCS-HCHHHHHHHHHSTTSEEEEEEEESS-S-TTS-SS-TTHHHHHHHHHHHHHHHHHTTEE--E
T ss_pred hhhHhheeEEEEECCCCCchhhHHHHHHHHCCCcEEEeeccccCCC-CcccccccccHHHHHHHHHHHHHHHHhhce--e
Confidence 011 1122 11 11346889999999976531 12211111 1233444444444566643 2
Q ss_pred eeee------eccCCCCCC-CCCCCccccccCCCCCCCCCCCCChhhHHHHHHHHHHHhhhhcccCCCCCCCCCCCCcce
Q 003095 290 YYMY------HGGTNFDRT-SGGPFISTSYDYDAPLDEYGLIRQPKWGHLKDLHKAIKLCEAALVATDPTYPSLGPNLEA 362 (848)
Q Consensus 290 ~YM~------hGGTNfG~~-~Ga~~~~TSYDYdApl~E~G~~~t~Ky~~lr~l~~~~~~~~~~~~~~~p~~~~~~~~~~~ 362 (848)
+-++ .||-|++.- ..++..+.. +. +|. ..+|.|+.|..+.+|++.-+.-+. .. ........+.
T Consensus 374 w~~WNl~LD~~GGP~~~~n~~d~~iivd~-~~----~~~--~~~p~yY~~gHfSKFV~PGa~RI~-st--~~~~~~~l~~ 443 (496)
T PF02055_consen 374 WIDWNLALDENGGPNWVGNFCDAPIIVDS-DT----GEF--YKQPEYYAMGHFSKFVRPGAVRIG-ST--SSSSDSGLEA 443 (496)
T ss_dssp EEEEESEBETTS---TT---B--SEEEEG-GG----TEE--EE-HHHHHHHHHHTTS-TT-EEEE-EE--ESSSTTTEEE
T ss_pred eeeeeeecCCCCCCcccCCCCCceeEEEc-CC----CeE--EEcHHHHHHHHHhcccCCCCEEEE-ee--ccCCCCceeE
Confidence 2222 588887532 122221111 11 121 236899999988777653211110 00 0000112344
Q ss_pred eEeecCCCceeeeeeccCCCc-ceEEEecC-------eeeecCCcce
Q 003095 363 TVYKTGSGLCSAFLANIGTNS-DVTVKFNG-------NSYLLPAWSV 401 (848)
Q Consensus 363 ~~y~~~~~~~~~fl~n~~~~~-~~~v~~~~-------~~~~l~~~sv 401 (848)
..|...++..+..+.|..+.. .++|++++ ..+.||+.++
T Consensus 444 vAF~nPDGs~vvVv~N~~~~~~~~~v~v~~~~~~~~~~~~~lp~~s~ 490 (496)
T PF02055_consen 444 VAFLNPDGSIVVVVLNRGDSDQNFSVTVKDGSKGNNHFNVTLPPRSI 490 (496)
T ss_dssp EEEEETTSEEEEEEEE-SSS-EEEEEEEECTTTEE--EEEEEE-TTE
T ss_pred EEEECCCCCEEEEEEcCCCCccceEEEEecCCcceeEEEEEeCCCce
Confidence 555555556666666654433 23465542 2456666553
No 56
>smart00642 Aamy Alpha-amylase domain.
Probab=90.83 E-value=0.56 Score=47.47 Aligned_cols=62 Identities=16% Similarity=0.110 Sum_probs=43.3
Q ss_pred ccHHHHHHHHHhCCCCEEEEccccCcc-------CCcCcee-----eecCcchHHHHHHHHHHcCcEEEEecCc
Q 003095 56 EMWPDLIQKSKDGGLDVIETYVFWNLH-------EPVRNQY-----NFEGRYDLVKFVKLVAEAGLYAHLRIGP 117 (848)
Q Consensus 56 ~~W~d~l~k~ka~GlNtV~~yv~Wn~h-------Ep~~G~y-----dF~g~~dl~~fl~la~~~GL~VilrpGP 117 (848)
+-+.+.|.-+|++|+|+|.+-=++..- .-.+..| .|....++.+|++.|+++||.||+-.=|
T Consensus 19 ~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~ 92 (166)
T smart00642 19 QGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVI 92 (166)
T ss_pred HHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECC
Confidence 345667777999999999874332211 1122222 4566689999999999999999987643
No 57
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.86 E-value=2.2 Score=49.27 Aligned_cols=122 Identities=19% Similarity=0.245 Sum_probs=79.8
Q ss_pred CcccHHHHHHHHHhCCCCEEEEcc-------------ccCccCCcCceee-ecCcchHHHHHHHHHHcCcEEEEecCccc
Q 003095 54 TPEMWPDLIQKSKDGGLDVIETYV-------------FWNLHEPVRNQYN-FEGRYDLVKFVKLVAEAGLYAHLRIGPYV 119 (848)
Q Consensus 54 ~~~~W~d~l~k~ka~GlNtV~~yv-------------~Wn~hEp~~G~yd-F~g~~dl~~fl~la~~~GL~VilrpGPYi 119 (848)
.+.+-.+.|.+++++|+|||-.-| +|..-- ||+.- =.|..-|...|++|++.||.|+.+.=||.
T Consensus 62 ~~~el~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~--~~~~~~~~g~DpLa~~I~~AHkr~l~v~aWf~~~~ 139 (418)
T COG1649 62 QRQELKDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGL--PGVLGVDPGYDPLAFVIAEAHKRGLEVHAWFNPYR 139 (418)
T ss_pred cHHHHHHHHHHHHHcCCceeEEEEecCccccccccccccccCc--CcccCCCCCCChHHHHHHHHHhcCCeeeechhhcc
Confidence 677889999999999999997432 244332 44432 22444788899999999999999988877
Q ss_pred ccccCCCC---CCcccCcC-CCeee-ecCC-------hhhHHHHHHHHHHHHH-HHhhcccccccCCceEeeccccccc
Q 003095 120 CAEWNFGG---FPLWLHFI-PGIQF-RTDN-------EPFKAEMQRFTAKIVD-MMKQEKLYASQGGPIILSQIENEYG 185 (848)
Q Consensus 120 caEw~~GG---~P~WL~~~-p~~~~-Rt~d-------~~y~~~v~~~~~~l~~-~l~~~~~~~~~gGpII~~QiENEyg 185 (848)
-|--..-. -|.|+... |+... +... .+..-+|+.|+..+.. .+++| .|=++|.+-=++
T Consensus 140 ~a~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ldPg~Pevq~~i~~lv~evV~~Y--------dvDGIQfDd~fy 210 (418)
T COG1649 140 MAPPTSPLTKRHPHWLTTKRPGWVYVRHQGWGKRVWLDPGIPEVQDFITSLVVEVVRNY--------DVDGIQFDDYFY 210 (418)
T ss_pred cCCCCChhHhhCCCCcccCCCCeEEEecCCceeeeEeCCCChHHHHHHHHHHHHHHhCC--------CCCceecceeec
Confidence 65422221 37788763 55333 3221 1345678888777764 44433 466788766554
No 58
>PRK14706 glycogen branching enzyme; Provisional
Probab=88.90 E-value=5.6 Score=48.72 Aligned_cols=53 Identities=15% Similarity=0.121 Sum_probs=35.6
Q ss_pred HHHHhCCCCEEEE-ccc-------cCccCCc--CceeeecCcchHHHHHHHHHHcCcEEEEec
Q 003095 63 QKSKDGGLDVIET-YVF-------WNLHEPV--RNQYNFEGRYDLVKFVKLVAEAGLYAHLRI 115 (848)
Q Consensus 63 ~k~ka~GlNtV~~-yv~-------Wn~hEp~--~G~ydF~g~~dl~~fl~la~~~GL~Vilrp 115 (848)
.-+|++|+|+|+. .|. |.+.-.- .=.=.|.+..||.+|++.|+++||.|||-.
T Consensus 175 ~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~VilD~ 237 (639)
T PRK14706 175 EYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTSRLGTPEDFKYLVNHLHGLGIGVILDW 237 (639)
T ss_pred HHHHHcCCCEEEccchhcCCCCCCCCcCcccccccccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 5689999999995 231 3321100 001123455799999999999999999864
No 59
>PF11875 DUF3395: Domain of unknown function (DUF3395); InterPro: IPR024586 Chaperone DnaJ was originally characterised from Escherichia coli as a 41 kDa heat shock protein. DnaJ has a modular structure consisting of a J-domain, a proximal G/F-domain, and a distal zinc finger domain, followed by less conserved C-terminal sequences. Since then, a large number of DnaJ-related proteins containing a J-domain have been characterised from a variety of different organisms. In the genome of Arabidopsis thaliana a total of 89 J-domain proteins have been identified []. This entry represents a C-terminal domain found in some eukaryotic DnaJ-like proteins, including member 11 from the subfamily C1 and protein DnaJ 13 from Arabidopsis. This domain is typically between 147 to 176 amino acids in length.
Probab=88.76 E-value=0.6 Score=46.62 Aligned_cols=64 Identities=20% Similarity=0.096 Sum_probs=37.8
Q ss_pred EeeeecCCCCC--CCCCC-----CCCcccCCchHHHHHHHccCCCceEEeec----CCcCC--CCCC--CCcceEEEEEE
Q 003095 782 IKFASFGTPLG--TCGSF-----SRGRCSSARSLSVVRQACVGSKSCSIGVS----VNTFG--DPCK--GVMKSLAVEAS 846 (848)
Q Consensus 782 I~~A~YGr~~~--~C~~~-----~~~~C~~~~s~~~V~~~C~Gk~~C~v~~~----~~~Fg--DPCp--gt~KyL~V~Y~ 846 (848)
|..|.||.... .+... ....+..-+++-.+. |.=+.++-.-.. ..+.| |||| |..|.|.|.|+
T Consensus 55 I~~A~YG~~~~~~~~~~~~~~~~~~~~~~~iDVTipLq--~lV~dS~L~l~~~~sKs~L~GF~DP~p~~ge~K~L~V~Y~ 132 (151)
T PF11875_consen 55 ILKAWYGNLPAKSDESNNDEPEDPDLDPPVIDVTIPLQ--ALVKDSQLILPEGVSKSGLPGFYDPCPFLGEPKQLRVRYR 132 (151)
T ss_pred EEEEEcCCcccccccccccccccccccCcEEEEhhhhh--hEeecCEEEEcCCCchhhCCCCCCCccccCCccEEEEEEE
Confidence 88999999732 33221 112233445544444 433444433222 24556 9999 88999999997
Q ss_pred e
Q 003095 847 C 847 (848)
Q Consensus 847 C 847 (848)
.
T Consensus 133 f 133 (151)
T PF11875_consen 133 F 133 (151)
T ss_pred E
Confidence 5
No 60
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=88.22 E-value=5.7 Score=43.03 Aligned_cols=127 Identities=17% Similarity=0.270 Sum_probs=75.8
Q ss_pred cccHHHHHHHHHhCCCCEEEEccccCccCCcCceeeecCcchHHHHHHHHHHcCcEEE-EecCcccccccCCCCCCcccC
Q 003095 55 PEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAH-LRIGPYVCAEWNFGGFPLWLH 133 (848)
Q Consensus 55 ~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~Vi-lrpGPYicaEw~~GG~P~WL~ 133 (848)
..-|++.|+.++++|++.|++-+. .. +..+...+++ ..++.++.+++++.||.|. +.+++ .+.+|
T Consensus 15 ~~~~~e~l~~~~~~G~~~VEl~~~-~~-~~~~~~~~~~-~~~~~~~~~~l~~~gl~i~~~~~~~-------~~~~~---- 80 (279)
T TIGR00542 15 GECWLERLQLAKTCGFDFVEMSVD-ET-DDRLSRLDWS-REQRLALVNAIIETGVRIPSMCLSA-------HRRFP---- 80 (279)
T ss_pred CCCHHHHHHHHHHcCCCEEEEecC-Cc-cchhhccCCC-HHHHHHHHHHHHHcCCCceeeecCC-------CccCc----
Confidence 467999999999999999999432 22 2223444554 3478899999999999975 43321 01111
Q ss_pred cCCCeeeecCChhhHHHHHHHHHHHHHHHhhcccccccCCceEeecccccccccccccCcc-------cHHHHHHHHHHH
Q 003095 134 FIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGNIDSAYGAA-------GKSYIKWAAGMA 206 (848)
Q Consensus 134 ~~p~~~~Rt~d~~y~~~v~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~-------~~~y~~~l~~~~ 206 (848)
+-+.|+.-+++..+.+++.++..+ .+ |.++|.+- ..++. ++.. -.+.++.|.+.+
T Consensus 81 ------l~~~~~~~r~~~~~~~~~~i~~a~--~l----G~~~v~~~-~~~~~-----~~~~~~~~~~~~~~~l~~l~~~A 142 (279)
T TIGR00542 81 ------LGSKDKAVRQQGLEIMEKAIQLAR--DL----GIRTIQLA-GYDVY-----YEEHDEETRRRFREGLKEAVELA 142 (279)
T ss_pred ------CCCcCHHHHHHHHHHHHHHHHHHH--Hh----CCCEEEec-Ccccc-----cCcCCHHHHHHHHHHHHHHHHHH
Confidence 122356666666677777777666 23 66776552 11110 1111 124555666667
Q ss_pred hhcCCCc
Q 003095 207 LSLDTGV 213 (848)
Q Consensus 207 ~~~g~~v 213 (848)
++.|+.+
T Consensus 143 ~~~Gv~l 149 (279)
T TIGR00542 143 ARAQVTL 149 (279)
T ss_pred HHcCCEE
Confidence 7777654
No 61
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=88.16 E-value=8.3 Score=47.98 Aligned_cols=59 Identities=15% Similarity=0.205 Sum_probs=43.2
Q ss_pred ccHHHHHHHHHhCCCCEEEE-ccc-------cCccCC---cCceeeecCcchHHHHHHHHHHcCcEEEEec
Q 003095 56 EMWPDLIQKSKDGGLDVIET-YVF-------WNLHEP---VRNQYNFEGRYDLVKFVKLVAEAGLYAHLRI 115 (848)
Q Consensus 56 ~~W~d~l~k~ka~GlNtV~~-yv~-------Wn~hEp---~~G~ydF~g~~dl~~fl~la~~~GL~Vilrp 115 (848)
+.|++.|..+|++|+|+|+. .|+ |.++-. .+ .-.|.+..+|.+|++.|+++||.|||-.
T Consensus 251 ~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~-~~~~Gtp~dlk~LVd~aH~~GI~VilDv 320 (758)
T PLN02447 251 EFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAV-SSRSGTPEDLKYLIDKAHSLGLRVLMDV 320 (758)
T ss_pred HHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCccc-ccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 34788999999999999995 232 443311 01 1135556799999999999999999875
No 62
>PRK05402 glycogen branching enzyme; Provisional
Probab=87.50 E-value=5.1 Score=49.88 Aligned_cols=53 Identities=19% Similarity=0.107 Sum_probs=36.6
Q ss_pred HHHHhCCCCEEEE-ccccC----ccCCcCce-----eeecCcchHHHHHHHHHHcCcEEEEec
Q 003095 63 QKSKDGGLDVIET-YVFWN----LHEPVRNQ-----YNFEGRYDLVKFVKLVAEAGLYAHLRI 115 (848)
Q Consensus 63 ~k~ka~GlNtV~~-yv~Wn----~hEp~~G~-----ydF~g~~dl~~fl~la~~~GL~Vilrp 115 (848)
.-+|++|+|+|.. .|+=. -|--.+.- =.|.+..||.+|++.|+++||.|||-.
T Consensus 273 ~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~Gt~~dfk~lV~~~H~~Gi~VilD~ 335 (726)
T PRK05402 273 PYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRFGTPDDFRYFVDACHQAGIGVILDW 335 (726)
T ss_pred HHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 6679999999996 45310 01111111 134566799999999999999999874
No 63
>PRK12568 glycogen branching enzyme; Provisional
Probab=87.02 E-value=9.2 Score=47.42 Aligned_cols=54 Identities=22% Similarity=0.289 Sum_probs=38.6
Q ss_pred HHHHHHhCCCCEEEE-ccc-------cCccCCcCcee----eecCcchHHHHHHHHHHcCcEEEEecC
Q 003095 61 LIQKSKDGGLDVIET-YVF-------WNLHEPVRNQY----NFEGRYDLVKFVKLVAEAGLYAHLRIG 116 (848)
Q Consensus 61 ~l~k~ka~GlNtV~~-yv~-------Wn~hEp~~G~y----dF~g~~dl~~fl~la~~~GL~VilrpG 116 (848)
.|.-+|++|+|+|+. .|+ |.+.- -|-| .|.+..++.+|++.|+++||.|||-.=
T Consensus 275 ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~--~~~~a~~~~~G~~~dfk~lV~~~H~~Gi~VIlD~V 340 (730)
T PRK12568 275 LIPYVQQLGFTHIELLPITEHPFGGSWGYQP--LGLYAPTARHGSPDGFAQFVDACHRAGIGVILDWV 340 (730)
T ss_pred HHHHHHHcCCCEEEECccccCCCCCCCCCCC--CcCCccCcccCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 357789999999985 342 43211 0111 355667999999999999999998753
No 64
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=86.71 E-value=0.96 Score=53.30 Aligned_cols=68 Identities=9% Similarity=0.211 Sum_probs=46.8
Q ss_pred eeCCCCC----cccHH---HHHHHHHhCCCCEEEE-ccccCc-----cCCcCce-e-------------eecCcchHHHH
Q 003095 48 IHYPRST----PEMWP---DLIQKSKDGGLDVIET-YVFWNL-----HEPVRNQ-Y-------------NFEGRYDLVKF 100 (848)
Q Consensus 48 ~Hy~R~~----~~~W~---d~l~k~ka~GlNtV~~-yv~Wn~-----hEp~~G~-y-------------dF~g~~dl~~f 100 (848)
+|.|-|+ .+.|+ +.|.-+|++|+++|-+ .++-+. |--.+-- | .|....||.++
T Consensus 7 ~q~f~w~~~~~~~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~L 86 (479)
T PRK09441 7 MQYFEWYLPNDGKLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNA 86 (479)
T ss_pred EEEEEeccCCCccHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHH
Confidence 4555554 35575 5677789999999986 455442 3222222 2 34456799999
Q ss_pred HHHHHHcCcEEEEec
Q 003095 101 VKLVAEAGLYAHLRI 115 (848)
Q Consensus 101 l~la~~~GL~Vilrp 115 (848)
++.|++.||+||+-.
T Consensus 87 i~~~H~~Gi~vi~D~ 101 (479)
T PRK09441 87 IDALHENGIKVYADV 101 (479)
T ss_pred HHHHHHCCCEEEEEE
Confidence 999999999999875
No 65
>PRK14705 glycogen branching enzyme; Provisional
Probab=85.02 E-value=14 Score=48.50 Aligned_cols=54 Identities=19% Similarity=0.164 Sum_probs=37.9
Q ss_pred HHHHHhCCCCEEEE-ccc-------cCccC--CcCceeeecCcchHHHHHHHHHHcCcEEEEec
Q 003095 62 IQKSKDGGLDVIET-YVF-------WNLHE--PVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRI 115 (848)
Q Consensus 62 l~k~ka~GlNtV~~-yv~-------Wn~hE--p~~G~ydF~g~~dl~~fl~la~~~GL~Vilrp 115 (848)
|.-+|++|+|+|+. .|+ |.+.- ...=.=.|.+..||.+|++.|+++||.|||-.
T Consensus 772 ldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~~ryGt~~dfk~lVd~~H~~GI~VILD~ 835 (1224)
T PRK14705 772 VDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPTSRFGHPDEFRFLVDSLHQAGIGVLLDW 835 (1224)
T ss_pred HHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 67889999999995 342 43211 00001134556799999999999999999863
No 66
>PRK01060 endonuclease IV; Provisional
Probab=84.80 E-value=12 Score=40.52 Aligned_cols=93 Identities=13% Similarity=0.244 Sum_probs=61.5
Q ss_pred HHHHHHHHHhCCCCEEEEccccCccCCcCceeeecCcchHHHHHHHHHHcCcEE---EEecCcccccccCCCCCCcccCc
Q 003095 58 WPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYA---HLRIGPYVCAEWNFGGFPLWLHF 134 (848)
Q Consensus 58 W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~V---ilrpGPYicaEw~~GG~P~WL~~ 134 (848)
+++.|++++++|++.|+..+. +-|.-.++.++- .++.++-+++++.||.+ .+ -+||.
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~-~p~~~~~~~~~~---~~~~~lk~~~~~~gl~~~~~~~-h~~~~--------------- 73 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTG-NPQQWKRKPLEE---LNIEAFKAACEKYGISPEDILV-HAPYL--------------- 73 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECC-CCCCCcCCCCCH---HHHHHHHHHHHHcCCCCCceEE-ecceE---------------
Confidence 899999999999999999653 112212222322 26888999999999973 33 23331
Q ss_pred CCCeeeecCChhhHHHHHHHHHHHHHHHhhcccccccCCceEeec
Q 003095 135 IPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQ 179 (848)
Q Consensus 135 ~p~~~~Rt~d~~y~~~v~~~~~~l~~~l~~~~~~~~~gGpII~~Q 179 (848)
+.+-+.|+..+++..+.+++.++..+ .+ |.++|-+.
T Consensus 74 ---~nl~~~d~~~r~~s~~~~~~~i~~A~--~l----ga~~vv~h 109 (281)
T PRK01060 74 ---INLGNPNKEILEKSRDFLIQEIERCA--AL----GAKLLVFH 109 (281)
T ss_pred ---ecCCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEEc
Confidence 12334677888888888888877766 33 55566654
No 67
>PLN00196 alpha-amylase; Provisional
Probab=84.03 E-value=3.4 Score=48.19 Aligned_cols=57 Identities=9% Similarity=0.140 Sum_probs=40.2
Q ss_pred HHHHHHHHhCCCCEEEEc-cccCc--cCCcCce-ee-----ecCcchHHHHHHHHHHcCcEEEEec
Q 003095 59 PDLIQKSKDGGLDVIETY-VFWNL--HEPVRNQ-YN-----FEGRYDLVKFVKLVAEAGLYAHLRI 115 (848)
Q Consensus 59 ~d~l~k~ka~GlNtV~~y-v~Wn~--hEp~~G~-yd-----F~g~~dl~~fl~la~~~GL~Vilrp 115 (848)
.+.|.-+|++|+++|-+- ++-+. |--.+.. |+ |....+|.++++.|++.||+||+-.
T Consensus 47 ~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDv 112 (428)
T PLN00196 47 MGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADI 112 (428)
T ss_pred HHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 467888899999999875 43221 2222221 22 3445699999999999999999874
No 68
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=84.00 E-value=7.6 Score=41.88 Aligned_cols=131 Identities=16% Similarity=0.220 Sum_probs=74.5
Q ss_pred ccHHHHHHHHHhCCCCEEEEccccCccCCcCceeeecCcchHHHHHHHHHHcCcEEE-EecCcccccccCCCCCCcccCc
Q 003095 56 EMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAH-LRIGPYVCAEWNFGGFPLWLHF 134 (848)
Q Consensus 56 ~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~Vi-lrpGPYicaEw~~GG~P~WL~~ 134 (848)
-.|++.|+.++++|+..|+..+. ..|+ .....+|+ ..++.++-++++++||.|. +.++ +.-.+
T Consensus 16 ~~~~e~~~~~~~~G~~~iEl~~~-~~~~-~~~~~~~~-~~~~~~l~~~l~~~Gl~i~~~~~~----------~~~~~--- 79 (284)
T PRK13210 16 LSWEERLVFAKELGFDFVEMSVD-ESDE-RLARLDWS-KEERLSLVKAIYETGVRIPSMCLS----------GHRRF--- 79 (284)
T ss_pred CCHHHHHHHHHHcCCCeEEEecC-Cccc-ccccccCC-HHHHHHHHHHHHHcCCCceEEecc----------cccCc---
Confidence 46999999999999999999532 2222 11122333 3478999999999999875 3221 11001
Q ss_pred CCCeeeecCChhhHHHHHHHHHHHHHHHhhcccccccCCceEeecccccccccc--cccCcccHHHHHHHHHHHhhcCCC
Q 003095 135 IPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGNID--SAYGAAGKSYIKWAAGMALSLDTG 212 (848)
Q Consensus 135 ~p~~~~Rt~d~~y~~~v~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~--~~~~~~~~~y~~~l~~~~~~~g~~ 212 (848)
.+.+.|+..+++..+.++++++..+ -+ |.+.|.+---..+.... ..+ ..-.+.++.|.+++++.|+.
T Consensus 80 ----~~~~~d~~~r~~~~~~~~~~i~~a~--~l----G~~~v~~~~~~~~~~~~~~~~~-~~~~~~l~~l~~~a~~~gv~ 148 (284)
T PRK13210 80 ----PFGSRDPATRERALEIMKKAIRLAQ--DL----GIRTIQLAGYDVYYEEKSEETR-QRFIEGLAWAVEQAAAAQVM 148 (284)
T ss_pred ----CCCCCCHHHHHHHHHHHHHHHHHHH--Hh----CCCEEEECCcccccccccHHHH-HHHHHHHHHHHHHHHHhCCE
Confidence 1223566666666666777766665 23 55666542110000000 000 01235677777788888875
Q ss_pred c
Q 003095 213 V 213 (848)
Q Consensus 213 v 213 (848)
+
T Consensus 149 l 149 (284)
T PRK13210 149 L 149 (284)
T ss_pred E
Confidence 4
No 69
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=83.02 E-value=9.1 Score=41.42 Aligned_cols=98 Identities=10% Similarity=0.153 Sum_probs=59.9
Q ss_pred ccHHHHHHHHHhCCCCEEEEccccCccCCcCceeeecCcchHHHHHHHHHHc-CcEEEEecCcccccccCCCCCCcccCc
Q 003095 56 EMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEA-GLYAHLRIGPYVCAEWNFGGFPLWLHF 134 (848)
Q Consensus 56 ~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~-GL~VilrpGPYicaEw~~GG~P~WL~~ 134 (848)
.-|++.|+.+|++|++.|++-+....-... ......+++++.++++++ ++.+.+- +||. +
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~i~~~-~~~~------------~-- 70 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSWLS----RPLKKERAEKFKAIAEEGPSICLSVH-APYL------------I-- 70 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCccCC----CCCCHHHHHHHHHHHHHcCCCcEEEE-cCce------------e--
Confidence 679999999999999999987643211111 111346899999999999 7666543 2331 1
Q ss_pred CCCeeeecCChhhHHHHHHHHHHHHHHHhhcccccccCCceEeecccc
Q 003095 135 IPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIEN 182 (848)
Q Consensus 135 ~p~~~~Rt~d~~y~~~v~~~~~~l~~~l~~~~~~~~~gGpII~~QiEN 182 (848)
.+.+.++.-+++..+.+++.++..+. + |-+.|.+...+
T Consensus 71 ----~~~~~~~~~r~~~~~~~~~~i~~A~~--l----G~~~v~~~~g~ 108 (279)
T cd00019 71 ----NLASPDKEKREKSIERLKDEIERCEE--L----GIRLLVFHPGS 108 (279)
T ss_pred ----ccCCCCHHHHHHHHHHHHHHHHHHHH--c----CCCEEEECCCC
Confidence 12233444455555556666665552 2 45666665443
No 70
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=82.50 E-value=1.9 Score=49.06 Aligned_cols=71 Identities=27% Similarity=0.271 Sum_probs=48.2
Q ss_pred EEEEeeCCCCCcccHHHHHHHHHhCCCCEEEEccccCccCCcCceeeecCcchHHHHHHHHHHcCcEEEEecCcccc
Q 003095 44 ISGSIHYPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVC 120 (848)
Q Consensus 44 ~sG~~Hy~R~~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~VilrpGPYic 120 (848)
+|=++++...+.+.....|++|+++|+..|=| ++|.|+...=+.- ..+..++++|+++||.|++-+.|=+.
T Consensus 2 lGiSvY~~~~~~~~~~~yi~~a~~~Gf~~iFT----SL~ipe~~~~~~~--~~~~~l~~~a~~~~~~v~~Disp~~l 72 (357)
T PF05913_consen 2 LGISVYPGQSSFEENKAYIEKAAKYGFKRIFT----SLHIPEDDPEDYL--ERLKELLKLAKELGMEVIADISPKVL 72 (357)
T ss_dssp EEEEE-CCCS-HHHHHHHHHHHHCTTEEEEEE----EE---------HH--HHHHHHHHHHHHCT-EEEEEE-CCHH
T ss_pred cEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEC----CCCcCCCCHHHHH--HHHHHHHHHHHHCCCEEEEECCHHHH
Confidence 55677777778899999999999999987766 7999985432211 37899999999999999999877443
No 71
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=80.37 E-value=2.9 Score=42.33 Aligned_cols=124 Identities=15% Similarity=0.174 Sum_probs=72.5
Q ss_pred HHHHHhCCCCEEEEccccCccCCcCceeeecCcchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCcccCcCCCeeee
Q 003095 62 IQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLHFIPGIQFR 141 (848)
Q Consensus 62 l~k~ka~GlNtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~VilrpGPYicaEw~~GG~P~WL~~~p~~~~R 141 (848)
|+.++++|+..|+....+....... ...++++.++++++||.+..--.+.. + .. +....+
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~~-------~~~~~~~~~~~~~~gl~i~~~~~~~~---~--------~~--~~~~~~ 60 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDEK-------DDEAEELRRLLEDYGLKIASLHPPTN---F--------WS--PDEENG 60 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTHH-------HHHHHHHHHHHHHTTCEEEEEEEEES---S--------SC--TGTTST
T ss_pred ChHHHHcCCCEEEEecCCCcccccc-------hHHHHHHHHHHHHcCCeEEEEecccc---c--------cc--cccccc
Confidence 6789999999999976543333222 24799999999999999663221110 0 00 100123
Q ss_pred cCChhhHHHHHHHHHHHHHHHhhcccccccCCceEeeccc--ccccccc--cccCcccHHHHHHHHHHHhhcCCCc
Q 003095 142 TDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIE--NEYGNID--SAYGAAGKSYIKWAAGMALSLDTGV 213 (848)
Q Consensus 142 t~d~~y~~~v~~~~~~l~~~l~~~~~~~~~gGpII~~QiE--NEyg~~~--~~~~~~~~~y~~~l~~~~~~~g~~v 213 (848)
+..+. ++...+.+.+.++..+. + |.+.|.+..- +...... ..+ ..-.+.++.|.+.+++.|+.+
T Consensus 61 ~~~~~-r~~~~~~~~~~i~~a~~--l----g~~~i~~~~g~~~~~~~~~~~~~~-~~~~~~l~~l~~~a~~~gv~i 128 (213)
T PF01261_consen 61 SANDE-REEALEYLKKAIDLAKR--L----GAKYIVVHSGRYPSGPEDDTEENW-ERLAENLRELAEIAEEYGVRI 128 (213)
T ss_dssp TSSSH-HHHHHHHHHHHHHHHHH--H----TBSEEEEECTTESSSTTSSHHHHH-HHHHHHHHHHHHHHHHHTSEE
T ss_pred Ccchh-hHHHHHHHHHHHHHHHH--h----CCCceeecCcccccccCCCHHHHH-HHHHHHHHHHHhhhhhhcceE
Confidence 34444 77777788888887773 3 6677777744 2222110 000 122356667777777778654
No 72
>KOG2230 consensus Predicted beta-mannosidase [Carbohydrate transport and metabolism]
Probab=78.68 E-value=6.6 Score=46.45 Aligned_cols=113 Identities=16% Similarity=0.233 Sum_probs=78.5
Q ss_pred cceEEECCEEeEEEEEEeeC-----CCCCcccHHHHHHHHHhCCCCEEEEccccCccCCcCceeeecCcchHHHHHHHHH
Q 003095 31 HRAVVIGGKRRVLISGSIHY-----PRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVA 105 (848)
Q Consensus 31 ~~~f~~dG~p~~~~sG~~Hy-----~R~~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~ 105 (848)
+-.|.|+|.|.++-+++--+ .|..-+.-+-.|+-++++|+|++++ |.- |...-++|-++|.
T Consensus 327 nfyfkin~~pvflkg~nwip~s~f~dr~t~~~~~~LL~Sv~e~~MN~lRV---WGG-----------GvYEsd~FY~lad 392 (867)
T KOG2230|consen 327 NFYFKINDEPVFLKGTNWIPVSMFRDRENIAKTEFLLDSVAEVGMNMLRV---WGG-----------GVYESDYFYQLAD 392 (867)
T ss_pred eeEEEEcCcEEEeecCCccChHHHHhhHHHHHHHHHHHHHHHhCcceEEE---ecC-----------ccccchhHHHHhh
Confidence 35688999999988887554 2234444566789999999999999 542 2334689999999
Q ss_pred HcCcEEEEecCcccccccCCCCCCcccCcCCCeeeecCChhhHHHHHHHHHHHHHHHhhcccccccCCceEeeccccc
Q 003095 106 EAGLYAHLRIGPYVCAEWNFGGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENE 183 (848)
Q Consensus 106 ~~GL~VilrpGPYicaEw~~GG~P~WL~~~p~~~~Rt~d~~y~~~v~~~~~~l~~~l~~~~~~~~~gGpII~~QiENE 183 (848)
+.||.|---. =|.|| +-..|..|++.|+.=++.=+.+|+.|| .||.+-=.||
T Consensus 393 ~lGilVWQD~-MFACA------------------lYPt~~eFl~sv~eEV~yn~~Rls~Hp-------SviIfsgNNE 444 (867)
T KOG2230|consen 393 SLGILVWQDM-MFACA------------------LYPTNDEFLSSVREEVRYNAMRLSHHP-------SVIIFSGNNE 444 (867)
T ss_pred hccceehhhh-HHHhh------------------cccCcHHHHHHHHHHHHHHHHhhccCC-------eEEEEeCCCc
Confidence 9999774211 12232 223577899999988888888887654 4666654444
No 73
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=78.67 E-value=6.1 Score=44.24 Aligned_cols=111 Identities=21% Similarity=0.300 Sum_probs=69.2
Q ss_pred CcccHHHHHHHHHhCCCCEEEEcc-------ccCccCCcCceeeec-C-cchHHHHHHHHHHcCcEEEEecCcccccccC
Q 003095 54 TPEMWPDLIQKSKDGGLDVIETYV-------FWNLHEPVRNQYNFE-G-RYDLVKFVKLVAEAGLYAHLRIGPYVCAEWN 124 (848)
Q Consensus 54 ~~~~W~d~l~k~ka~GlNtV~~yv-------~Wn~hEp~~G~ydF~-g-~~dl~~fl~la~~~GL~VilrpGPYicaEw~ 124 (848)
.++.-+..|+.+|+.|+|+|-+-| .+....|..-+..-. . ..|+.++++.++++|+++|.|+=-|--..-
T Consensus 11 ~~~~~~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~IARIv~FkD~~l- 89 (316)
T PF13200_consen 11 SPERLDKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEHGIYPIARIVVFKDPVL- 89 (316)
T ss_pred CHHHHHHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhcccccccccCHHHHHHHHHHCCCEEEEEEEEecChHH-
Confidence 345678899999999999997543 354433332222111 1 369999999999999999999732221000
Q ss_pred CCCCCcccCc-CCCeeeecCC-----hhhHHHHHHHHHHHHHHHhhc
Q 003095 125 FGGFPLWLHF-IPGIQFRTDN-----EPFKAEMQRFTAKIVDMMKQE 165 (848)
Q Consensus 125 ~GG~P~WL~~-~p~~~~Rt~d-----~~y~~~v~~~~~~l~~~l~~~ 165 (848)
..--|.|-.+ ..+-..|... .+|.+.|.+|.-.|+..+++.
T Consensus 90 a~~~pe~av~~~~G~~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa~~ 136 (316)
T PF13200_consen 90 AEAHPEWAVKTKDGSVWRDNEGEAWVNPYSKEVWDYNIDIAKEAAKL 136 (316)
T ss_pred hhhChhhEEECCCCCcccCCCCCccCCCCCHHHHHHHHHHHHHHHHc
Confidence 0013555542 1121122111 258899999999999988854
No 74
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=78.27 E-value=21 Score=37.95 Aligned_cols=43 Identities=19% Similarity=0.245 Sum_probs=35.7
Q ss_pred cHHHHHHHHHhCCCCEEEEccccCccCCcCceeeecCcchHHHHHHHHHHcCcEEEE
Q 003095 57 MWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHL 113 (848)
Q Consensus 57 ~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~Vil 113 (848)
-+++.|++++++|++.|+...++ ..++.++.++++++||.|..
T Consensus 15 ~l~e~~~~~~e~G~~~vEl~~~~--------------~~~~~~l~~~l~~~gl~v~~ 57 (254)
T TIGR03234 15 PFLERFAAAAQAGFTGVEYLFPY--------------DWDAEALKARLAAAGLEQVL 57 (254)
T ss_pred CHHHHHHHHHHcCCCEEEecCCc--------------cCCHHHHHHHHHHcCCeEEE
Confidence 48999999999999999984322 13688999999999999864
No 75
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=78.08 E-value=2.2 Score=45.90 Aligned_cols=57 Identities=19% Similarity=0.215 Sum_probs=39.0
Q ss_pred HHHHHHHHhCCCCEEEEccccCcc----CCcCcee-----eecCcchHHHHHHHHHHcCcEEEEec
Q 003095 59 PDLIQKSKDGGLDVIETYVFWNLH----EPVRNQY-----NFEGRYDLVKFVKLVAEAGLYAHLRI 115 (848)
Q Consensus 59 ~d~l~k~ka~GlNtV~~yv~Wn~h----Ep~~G~y-----dF~g~~dl~~fl~la~~~GL~Vilrp 115 (848)
.+.|.-+|++|+|+|.+-=++.-. --.+--| .|.+..+|.+|++.|++.||+|||-.
T Consensus 7 ~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~ 72 (316)
T PF00128_consen 7 IDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDV 72 (316)
T ss_dssp HHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEee
Confidence 457888999999999974333321 1111111 13345699999999999999999864
No 76
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=78.03 E-value=3.5 Score=49.48 Aligned_cols=53 Identities=26% Similarity=0.381 Sum_probs=39.1
Q ss_pred HHHHHHHhCCCCEEEE-ccc-------cCcc-----CCcCceeeecCcchHHHHHHHHHHcCcEEEEec
Q 003095 60 DLIQKSKDGGLDVIET-YVF-------WNLH-----EPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRI 115 (848)
Q Consensus 60 d~l~k~ka~GlNtV~~-yv~-------Wn~h-----Ep~~G~ydF~g~~dl~~fl~la~~~GL~Vilrp 115 (848)
++|.-+|++|+|+|.. .|+ |.+. .+.+ .|.+..+|.+|++.|+++||.|||-.
T Consensus 115 ~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~---~~G~~~e~k~lV~~aH~~Gi~VilD~ 180 (542)
T TIGR02402 115 EKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHN---AYGGPDDLKALVDAAHGLGLGVILDV 180 (542)
T ss_pred HhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCcccccc---ccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 4688899999999985 342 4322 1111 34566799999999999999999874
No 77
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=77.82 E-value=83 Score=36.31 Aligned_cols=243 Identities=16% Similarity=0.176 Sum_probs=121.5
Q ss_pred eeCCCCCcccHHHHHHHHHhCCCCEEEE-------ccccCccCCcCceeeec-CcchHHHHHHHHHHcCcEEEEecCccc
Q 003095 48 IHYPRSTPEMWPDLIQKSKDGGLDVIET-------YVFWNLHEPVRNQYNFE-GRYDLVKFVKLVAEAGLYAHLRIGPYV 119 (848)
Q Consensus 48 ~Hy~R~~~~~W~d~l~k~ka~GlNtV~~-------yv~Wn~hEp~~G~ydF~-g~~dl~~fl~la~~~GL~VilrpGPYi 119 (848)
+.+.+..++.|.+ .+|++|+.-|-. +-.|.-....-..-+-. ++--|.+|.+.|+++||++-+ |.
T Consensus 76 F~p~~fD~~~Wa~---~~k~AGakY~vlTaKHHDGF~lw~S~~t~~n~~~~~pkrDiv~el~~A~rk~Glk~G~----Y~ 148 (384)
T smart00812 76 FTAEKFDPEEWAD---LFKKAGAKYVVLTAKHHDGFCLWDSKYSNWNAVDTGPKRDLVGELADAVRKRGLKFGL----YH 148 (384)
T ss_pred CCchhCCHHHHHH---HHHHcCCCeEEeeeeecCCccccCCCCCCCcccCCCCCcchHHHHHHHHHHcCCeEEE----Ec
Confidence 4445567777765 577888875542 11244332211111111 223467889999999997766 43
Q ss_pred c-cccCCCCCCcccCcCCCeeeecCChhhHHHHHHHHHHHHHHHhhcccccccCCceEeecccccccccccccCcccHHH
Q 003095 120 C-AEWNFGGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGNIDSAYGAAGKSY 198 (848)
Q Consensus 120 c-aEw~~GG~P~WL~~~p~~~~Rt~d~~y~~~v~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y 198 (848)
- -+|.. |.|....+.-..+.+.+.|.++++.|+.+|-+.+.++ ||-++|- +-..+.. ...--
T Consensus 149 S~~DW~~---p~y~~~~~~~~~~~~~~~~~~y~~~~~~Ql~ELit~Y-------gpd~lWf-D~~~~~~------~~~~~ 211 (384)
T smart00812 149 SLFDWFN---PLYAGPTSSDEDPDNWPRFQEFVDDWLPQLRELVTRY-------KPDLLWF-DGGWEAP------DDYWR 211 (384)
T ss_pred CHHHhCC---CccccccccccccccchhHHHHHHHHHHHHHHHHhcC-------CCceEEE-eCCCCCc------cchhc
Confidence 3 36754 4443221111123356788898988888888887643 3344442 1111110 11112
Q ss_pred HHHHHHHHhhcCCCc-ceEEecCCCCCCccccCCCCcc--c-CccCCC-CCCCCeee-eecccccccccCC-CCCCCCHH
Q 003095 199 IKWAAGMALSLDTGV-PWVMCQQSDAPDPIINTCNGFY--C-DQFTPN-SNNKPKMW-TENWSGWFLSFGG-AVPYRPVE 271 (848)
Q Consensus 199 ~~~l~~~~~~~g~~v-p~~~~~~~~~~~~~~~~~ng~~--~-~~~~~~-~p~~P~~~-~E~~~Gwf~~wG~-~~~~~~~~ 271 (848)
++.|.++++++.-+. -.+.++... . .. ...|.+ + +...+. ....|.-. +=.-.+|+-+-++ ....++++
T Consensus 212 ~~~l~~~~~~~qP~~~~vvvn~R~~--~-~~-~~~g~~~~~~e~~~p~~~~~~pwE~~~ti~~sWgy~~~~~~~~~ks~~ 287 (384)
T smart00812 212 SKEFLAWLYNLSPVKDTVVVNDRWG--G-TG-CKHGGFYTDEERGAPGKLLPHPWETCTTIGKSWGYRRNESDSDYKSPK 287 (384)
T ss_pred HHHHHHHHHHhCCCCceEEEEcccc--c-cC-CCCCCcccCcccCCCCCCCCCCcccccccCCCCCcCCCCCcccCCCHH
Confidence 344666666654332 112233211 0 00 000110 0 111100 00112111 0011356555544 34467899
Q ss_pred HHHHHHHHHHHcCCeeeeeeeeeccCCCCCCCCCCCccccccCCCCCCCCCCCCChhhHHHHHHHHHHHhhh
Q 003095 272 DLAFAVARFFQRGGTFQNYYMYHGGTNFDRTSGGPFISTSYDYDAPLDEYGLIRQPKWGHLKDLHKAIKLCE 343 (848)
Q Consensus 272 ~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~Ga~~~~TSYDYdApl~E~G~~~t~Ky~~lr~l~~~~~~~~ 343 (848)
++...+.+.+++|++++ + |- +-+.+|.+....-..|+++...++...
T Consensus 288 ~li~~l~~~Vsk~GnlL---L-----NV-----------------gP~~dG~ip~~~~~~L~~iG~Wl~~ng 334 (384)
T smart00812 288 ELIRDLVDIVSKGGNLL---L-----NV-----------------GPKADGTIPEEEEERLLEIGKWLKVNG 334 (384)
T ss_pred HHHHHHhhhcCCCceEE---E-----cc-----------------CCCCCCCCCHHHHHHHHHHHHHHHhCC
Confidence 99999999999998742 1 11 233567776666778889988887543
No 78
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=77.67 E-value=6.2 Score=51.63 Aligned_cols=112 Identities=15% Similarity=0.253 Sum_probs=66.3
Q ss_pred eEEECCEEeEEE---EEEeeCCCC--CcccHHHHHHHHHhCCCCEEEE-ccc-cC---ccCCcCceee----e----cCc
Q 003095 33 AVVIGGKRRVLI---SGSIHYPRS--TPEMWPDLIQKSKDGGLDVIET-YVF-WN---LHEPVRNQYN----F----EGR 94 (848)
Q Consensus 33 ~f~~dG~p~~~~---sG~~Hy~R~--~~~~W~d~l~k~ka~GlNtV~~-yv~-Wn---~hEp~~G~yd----F----~g~ 94 (848)
.+.|+|+.++.+ +=.-..+++ +-+.|++.|+.+|++|.|+|-. .|+ =. ..=.....+. | .|.
T Consensus 104 ~L~i~~~~~lPl~~i~iqTvlsK~mG~~~~w~~~L~~ik~lGyN~IhftPI~~~G~SnS~Ysi~Dyl~idP~~~~~~~~~ 183 (1464)
T TIGR01531 104 MLYINADKFLPLDSIALQTVLAKLLGPLSEWEPRLRVAKEKGYNMIHFTPLQELGGSNSCYSLYDQLQLNQHFKSQKDGK 183 (1464)
T ss_pred eeEECCCcccCcCceeeeeehhhhcCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCccccchhhcChhhcccCCcH
Confidence 455666333332 223334554 5578999999999999999984 444 11 0001112221 3 356
Q ss_pred chHHHHHHHHHHc-CcEEEEecCcccccccCCCCC-CcccCcCCCeeeecCChhhHHH
Q 003095 95 YDLVKFVKLVAEA-GLYAHLRIGPYVCAEWNFGGF-PLWLHFIPGIQFRTDNEPFKAE 150 (848)
Q Consensus 95 ~dl~~fl~la~~~-GL~VilrpGPYicaEw~~GG~-P~WL~~~p~~~~Rt~d~~y~~~ 150 (848)
.|+.++++.+++. ||++|+-. | |+--+. =.||.++|+.-.-..+.+||++
T Consensus 184 ~d~~~lV~~~h~~~Gm~~ilDv---V---~NHTa~ds~Wl~eHPEa~Yn~~~sP~L~~ 235 (1464)
T TIGR01531 184 NDVQALVEKLHRDWNVLSITDI---V---FNHTANNSPWLLEHPEAAYNCITSPHLRP 235 (1464)
T ss_pred HHHHHHHHHHHHhcCCEEEEEe---e---ecccccCCHHHHhChHhhcCCCCCchhhh
Confidence 7999999999996 99999863 1 222222 2588877764333334445444
No 79
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=77.24 E-value=4.2 Score=45.00 Aligned_cols=67 Identities=15% Similarity=0.182 Sum_probs=49.1
Q ss_pred CcccHHHHHHHHHhCCCCEEEEccccCccCCc-CceeeecCc--chHHHHHHHHHHcCcEEEEecCcccc
Q 003095 54 TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPV-RNQYNFEGR--YDLVKFVKLVAEAGLYAHLRIGPYVC 120 (848)
Q Consensus 54 ~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~-~G~ydF~g~--~dl~~fl~la~~~GL~VilrpGPYic 120 (848)
..+..++.++++|+.||..=.+++-..++... -+.|.|.-. -|..++++..+++|++|++..=|+|+
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P~i~ 91 (308)
T cd06593 22 DEEEVNEFADGMRERNLPCDVIHLDCFWMKEFQWCDFEFDPDRFPDPEGMLSRLKEKGFKVCLWINPYIA 91 (308)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEecccccCCcceeeEECcccCCCHHHHHHHHHHCCCeEEEEecCCCC
Confidence 66778999999999997664444443333322 246666533 38999999999999999998877775
No 80
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=77.20 E-value=20 Score=40.46 Aligned_cols=134 Identities=17% Similarity=0.256 Sum_probs=87.1
Q ss_pred CcccHHHHHHHHHhCCCCEEEEccccCccCCcCceeeecCcchHHHHHHHHH---HcCcEEEEecCcccccccCCCCC-C
Q 003095 54 TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVA---EAGLYAHLRIGPYVCAEWNFGGF-P 129 (848)
Q Consensus 54 ~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~---~~GL~VilrpGPYicaEw~~GG~-P 129 (848)
.++..+.-++.+|+.||+.--.|-.| |.|.+-|++-++..- +.+|..-|. |.+.-- =
T Consensus 56 ~p~v~~~Q~~lA~~~GI~gF~~~~Yw-----------f~gk~lLe~p~~~~l~~~~~d~pFcl~--------WAN~~w~~ 116 (345)
T PF14307_consen 56 DPEVMEKQAELAKEYGIDGFCFYHYW-----------FNGKRLLEKPLENLLASKEPDFPFCLC--------WANENWTR 116 (345)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEeee-----------cCCchHHHHHHHHHHhcCCCCCcEEEE--------ECCChhhh
Confidence 56778889999999999999998777 557777777776554 345554444 333210 1
Q ss_pred cccCcCCCeeeecCChhhH--HHHHHHHHHHHHHHhhcccccccCCceEeecccccccccccccCcccHHHHHHHHHHHh
Q 003095 130 LWLHFIPGIQFRTDNEPFK--AEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGNIDSAYGAAGKSYIKWAAGMAL 207 (848)
Q Consensus 130 ~WL~~~p~~~~Rt~d~~y~--~~v~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~ 207 (848)
.|-.....+.+ .+.|. +..++.++.|++.+++..++--+|-||+++=--.+. ..-+++++.+++.++
T Consensus 117 ~w~g~~~~~l~---~q~y~~~~d~~~~~~~l~~~F~D~rYikVdGKPv~~Iy~p~~~--------pd~~~~~~~wr~~a~ 185 (345)
T PF14307_consen 117 RWDGRNNEILI---EQKYSGEDDWKEHFRYLLPYFKDPRYIKVDGKPVFLIYRPGDI--------PDIKEMIERWREEAK 185 (345)
T ss_pred ccCCCCccccc---cccCCchhHHHHHHHHHHHHhCCCCceeECCEEEEEEECcccc--------cCHHHHHHHHHHHHH
Confidence 23332222222 12232 234677788888888766655689999998433222 145789999999999
Q ss_pred hcCCCcceEE
Q 003095 208 SLDTGVPWVM 217 (848)
Q Consensus 208 ~~g~~vp~~~ 217 (848)
++|+.-+.+.
T Consensus 186 ~~G~~giyii 195 (345)
T PF14307_consen 186 EAGLPGIYII 195 (345)
T ss_pred HcCCCceEEE
Confidence 9998866554
No 81
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=77.01 E-value=26 Score=37.81 Aligned_cols=125 Identities=18% Similarity=0.284 Sum_probs=73.1
Q ss_pred cHHHHHHHHHhCCCCEEEEccccCccCCcCceeeecCcchHHHHHHHHHHcCcEEE-EecCcccccccCCCCCCcccCcC
Q 003095 57 MWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAH-LRIGPYVCAEWNFGGFPLWLHFI 135 (848)
Q Consensus 57 ~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~Vi-lrpGPYicaEw~~GG~P~WL~~~ 135 (848)
-|.+.++.++++|+..|+..+. ..++ ....++++ ..+++++.++++++||.|. +.++.. ..++
T Consensus 22 ~~~e~~~~~~~~G~~~iEl~~~-~~~~-~~~~~~~~-~~~~~~l~~~l~~~gl~i~~~~~~~~-------~~~~------ 85 (283)
T PRK13209 22 CWLEKLAIAKTAGFDFVEMSVD-ESDE-RLARLDWS-REQRLALVNALVETGFRVNSMCLSAH-------RRFP------ 85 (283)
T ss_pred CHHHHHHHHHHcCCCeEEEecC-cccc-chhccCCC-HHHHHHHHHHHHHcCCceeEEecccc-------cccC------
Confidence 6999999999999999999532 1111 01122333 2368899999999999875 332110 0010
Q ss_pred CCeeeecCChhhHHHHHHHHHHHHHHHhhcccccccCCceEeecccccccccccccCc-------ccHHHHHHHHHHHhh
Q 003095 136 PGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGNIDSAYGA-------AGKSYIKWAAGMALS 208 (848)
Q Consensus 136 p~~~~Rt~d~~y~~~v~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~-------~~~~y~~~l~~~~~~ 208 (848)
+-+.|+.-++...+.+++.++..+ .+ |.++|.+. |... .++. .-.+.++.|.+.+++
T Consensus 86 ----~~~~~~~~r~~~~~~~~~~i~~a~--~l----G~~~i~~~-----~~~~-~~~~~~~~~~~~~~~~l~~l~~~A~~ 149 (283)
T PRK13209 86 ----LGSEDDAVRAQALEIMRKAIQLAQ--DL----GIRVIQLA-----GYDV-YYEQANNETRRRFIDGLKESVELASR 149 (283)
T ss_pred ----CCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEEC-----Cccc-cccccHHHHHHHHHHHHHHHHHHHHH
Confidence 113466666777777777777776 23 66777653 1100 0111 113456667777777
Q ss_pred cCCCc
Q 003095 209 LDTGV 213 (848)
Q Consensus 209 ~g~~v 213 (848)
.|+.+
T Consensus 150 ~GV~i 154 (283)
T PRK13209 150 ASVTL 154 (283)
T ss_pred hCCEE
Confidence 77654
No 82
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=75.86 E-value=29 Score=37.25 Aligned_cols=131 Identities=12% Similarity=0.072 Sum_probs=70.0
Q ss_pred ccHHHHHHHHHhCCCCEEEEccccCccCCcCceeeecCcchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCcccCcC
Q 003095 56 EMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLHFI 135 (848)
Q Consensus 56 ~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~VilrpGPYicaEw~~GG~P~WL~~~ 135 (848)
.-|++.|+.++++|++.|++.... .|+-.+ +++ ..+++++-++++++||.|.. .+|. .+++|..+.
T Consensus 13 ~~l~~~l~~~~~~G~~~vEl~~~~-~~~~~~---~~~-~~~~~~l~~~~~~~gl~v~s-~~~~------~~~~~~~~~-- 78 (275)
T PRK09856 13 LPIEHAFRDASELGYDGIEIWGGR-PHAFAP---DLK-AGGIKQIKALAQTYQMPIIG-YTPE------TNGYPYNMM-- 78 (275)
T ss_pred CCHHHHHHHHHHcCCCEEEEccCC-cccccc---ccC-chHHHHHHHHHHHcCCeEEE-ecCc------ccCcCcccc--
Confidence 359999999999999999983211 011111 121 24788999999999999763 2221 123333222
Q ss_pred CCeeeecCChhhHHHHHHHHHHHHHHHhhcccccccCCceEeecccccc-c-ccccccCcccHHHHHHHHHHHhhcCCCc
Q 003095 136 PGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEY-G-NIDSAYGAAGKSYIKWAAGMALSLDTGV 213 (848)
Q Consensus 136 p~~~~Rt~d~~y~~~v~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEy-g-~~~~~~~~~~~~y~~~l~~~~~~~g~~v 213 (848)
..++..+++..+.+++.++.-+ .+ |.+.|.+-.-..- . .....+ ..-.+.++.|.+.+++.|+.+
T Consensus 79 ------~~~~~~r~~~~~~~~~~i~~a~--~l----Ga~~i~~~~~~~~~~~~~~~~~-~~~~~~l~~l~~~a~~~gv~l 145 (275)
T PRK09856 79 ------LGDEHMRRESLDMIKLAMDMAK--EM----NAGYTLISAAHAGYLTPPNVIW-GRLAENLSELCEYAENIGMDL 145 (275)
T ss_pred ------CCCHHHHHHHHHHHHHHHHHHH--Hh----CCCEEEEcCCCCCCCCCHHHHH-HHHHHHHHHHHHHHHHcCCEE
Confidence 1234444555555555555554 22 5556555321110 0 000001 122346777777787777643
No 83
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=74.02 E-value=18 Score=41.88 Aligned_cols=112 Identities=14% Similarity=0.167 Sum_probs=70.3
Q ss_pred eeCCCCCcccHHHHHHHHHhCCCCEEEEccccCccCCcC----ceeeecCc---chHHHHHHHHHHcCcEEEEecCcccc
Q 003095 48 IHYPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVR----NQYNFEGR---YDLVKFVKLVAEAGLYAHLRIGPYVC 120 (848)
Q Consensus 48 ~Hy~R~~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~----G~ydF~g~---~dl~~fl~la~~~GL~VilrpGPYic 120 (848)
.+|+.+..+.-.+.+++++++|++.+.+-=-|....... |.|.-+-. .-|..+.+.+++.||+.=|+..|.+.
T Consensus 50 ~~~~d~~e~~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~~~kFP~Gl~~l~~~i~~~Gmk~GlW~ePe~v 129 (394)
T PF02065_consen 50 AYYFDITEEKILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEPDPKKFPNGLKPLADYIHSLGMKFGLWFEPEMV 129 (394)
T ss_dssp HHTTG--HHHHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECBBTTTSTTHHHHHHHHHHHTT-EEEEEEETTEE
T ss_pred ccCcCCCHHHHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeEChhhhCCcHHHHHHHHHHCCCeEEEEeccccc
Confidence 456778888888999999999999998888887542222 44432211 13999999999999999988888765
Q ss_pred cccC--CCCCCcccCcCCCee---ee------cCChhhHHHHHHHHHHHH
Q 003095 121 AEWN--FGGFPLWLHFIPGIQ---FR------TDNEPFKAEMQRFTAKIV 159 (848)
Q Consensus 121 aEw~--~GG~P~WL~~~p~~~---~R------t~d~~y~~~v~~~~~~l~ 159 (848)
++-. +-..|.|+...++.. -| .++|...+++.+.+.+++
T Consensus 130 ~~~S~l~~~hPdw~l~~~~~~~~~~r~~~vLD~~~pev~~~l~~~i~~ll 179 (394)
T PF02065_consen 130 SPDSDLYREHPDWVLRDPGRPPTLGRNQYVLDLSNPEVRDYLFEVIDRLL 179 (394)
T ss_dssp ESSSCHCCSSBGGBTCCTTSE-ECBTTBEEB-TTSHHHHHHHHHHHHHHH
T ss_pred cchhHHHHhCccceeecCCCCCcCcccceEEcCCCHHHHHHHHHHHHHHH
Confidence 4321 224799998765421 12 235555555555554443
No 84
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=73.51 E-value=42 Score=38.61 Aligned_cols=91 Identities=13% Similarity=0.113 Sum_probs=53.4
Q ss_pred CcccHHHHHHHHHhCCCCEEEEc----cccCccCCcCceeeecCcchHHHHHHHHHHcCcEEEE-ecCcccccccCCCCC
Q 003095 54 TPEMWPDLIQKSKDGGLDVIETY----VFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHL-RIGPYVCAEWNFGGF 128 (848)
Q Consensus 54 ~~~~W~d~l~k~ka~GlNtV~~y----v~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~Vil-rpGPYicaEw~~GG~ 128 (848)
++....+++++++++|+..|+.. ++|..-+.+ -..++.++-+++++.||.|.. -++-+....|..|
T Consensus 30 ~~~~~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~e-------~~~~~~~lk~~L~~~GL~v~~v~~nl~~~~~~~~g-- 100 (382)
T TIGR02631 30 TALDPVEAVHKLAELGAYGVTFHDDDLIPFGAPPQE-------RDQIVRRFKKALDETGLKVPMVTTNLFSHPVFKDG-- 100 (382)
T ss_pred CCcCHHHHHHHHHHhCCCEEEecccccCCCCCChhH-------HHHHHHHHHHHHHHhCCeEEEeeccccCCccccCC--
Confidence 44567899999999999999963 222111100 023578899999999999763 3321111111111
Q ss_pred CcccCcCCCeeeecCChhhHHHHHHHHHHHHHHHh
Q 003095 129 PLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMK 163 (848)
Q Consensus 129 P~WL~~~p~~~~Rt~d~~y~~~v~~~~~~l~~~l~ 163 (848)
.+=+.|+..+++.-+.+++.+..-+
T Consensus 101 ----------~las~d~~vR~~ai~~~kraId~A~ 125 (382)
T TIGR02631 101 ----------GFTSNDRSVRRYALRKVLRNMDLGA 125 (382)
T ss_pred ----------CCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 1334577666665555666666555
No 85
>PRK10785 maltodextrin glucosidase; Provisional
Probab=71.76 E-value=7.1 Score=47.50 Aligned_cols=57 Identities=16% Similarity=0.234 Sum_probs=40.9
Q ss_pred HHHHHHHHhCCCCEEEE-ccccC--ccCCcCcee-----eecCcchHHHHHHHHHHcCcEEEEec
Q 003095 59 PDLIQKSKDGGLDVIET-YVFWN--LHEPVRNQY-----NFEGRYDLVKFVKLVAEAGLYAHLRI 115 (848)
Q Consensus 59 ~d~l~k~ka~GlNtV~~-yv~Wn--~hEp~~G~y-----dF~g~~dl~~fl~la~~~GL~Vilrp 115 (848)
.+.|.-+|++|+|+|-. .||=+ .|---..-| .|.+..||.+|++.|++.||+|||-.
T Consensus 182 ~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~ 246 (598)
T PRK10785 182 SEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDG 246 (598)
T ss_pred HHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 56788889999999996 56632 221111111 24566799999999999999999863
No 86
>PRK12313 glycogen branching enzyme; Provisional
Probab=71.14 E-value=7 Score=47.83 Aligned_cols=54 Identities=17% Similarity=0.232 Sum_probs=37.8
Q ss_pred HHHHHhCCCCEEEE-ccc-------cCccCCc--CceeeecCcchHHHHHHHHHHcCcEEEEec
Q 003095 62 IQKSKDGGLDVIET-YVF-------WNLHEPV--RNQYNFEGRYDLVKFVKLVAEAGLYAHLRI 115 (848)
Q Consensus 62 l~k~ka~GlNtV~~-yv~-------Wn~hEp~--~G~ydF~g~~dl~~fl~la~~~GL~Vilrp 115 (848)
|.-+|++|+|+|.. .|+ |.+.-.. .=.-.|.+..||.+|++.|+++||.|||-.
T Consensus 177 l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~Gt~~d~k~lv~~~H~~Gi~VilD~ 240 (633)
T PRK12313 177 IPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRYGTPEDFMYLVDALHQNGIGVILDW 240 (633)
T ss_pred HHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 58889999999995 453 3211100 001135567799999999999999999874
No 87
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=71.03 E-value=3.4 Score=34.57 Aligned_cols=47 Identities=30% Similarity=0.400 Sum_probs=30.6
Q ss_pred CCcchhHHHHHHHHHHHHHhcc----CCeeEEEecceEEECCEEeEEEEEEee
Q 003095 1 MASKEILLLVLCWGFVVLATTS----FGANVTYDHRAVVIGGKRRVLISGSIH 49 (848)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~d~~~f~~dG~p~~~~sG~~H 49 (848)
||+|.+++-||+++|++-+-+| ++..=+||.+.+ |..|+..-+.+.|
T Consensus 1 MA~Kl~vialLC~aLva~vQ~APQYa~GeeP~YDEdd~--dde~l~phsss~~ 51 (65)
T PF10731_consen 1 MASKLIVIALLCVALVAIVQSAPQYAPGEEPSYDEDDD--DDEPLKPHSSSIT 51 (65)
T ss_pred CcchhhHHHHHHHHHHHHHhcCcccCCCCCCCcCcccC--cccccccCCCCCC
Confidence 9999999999999987744333 555567776543 3444444444443
No 88
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=70.72 E-value=6 Score=47.51 Aligned_cols=59 Identities=15% Similarity=0.084 Sum_probs=41.2
Q ss_pred cHHHHHHHHHhCCCCEEEE-ccccCc---cCCcCcee-----eecCcchHHHHHHHHHHcCcEEEEec
Q 003095 57 MWPDLIQKSKDGGLDVIET-YVFWNL---HEPVRNQY-----NFEGRYDLVKFVKLVAEAGLYAHLRI 115 (848)
Q Consensus 57 ~W~d~l~k~ka~GlNtV~~-yv~Wn~---hEp~~G~y-----dF~g~~dl~~fl~la~~~GL~Vilrp 115 (848)
-+.++|.-+|++|+|+|-+ .++-+- |--.+.-| .|.+..||.+|++.|+++||+|||-.
T Consensus 28 gi~~~l~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~ 95 (543)
T TIGR02403 28 GIIEKLDYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDM 95 (543)
T ss_pred HHHHhHHHHHHcCCCEEEECCcccCCCCCCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 4667888999999999986 344321 10011111 14456799999999999999999864
No 89
>PRK09989 hypothetical protein; Provisional
Probab=70.64 E-value=41 Score=35.95 Aligned_cols=43 Identities=16% Similarity=0.328 Sum_probs=34.6
Q ss_pred cHHHHHHHHHhCCCCEEEEccccCccCCcCceeeecCcchHHHHHHHHHHcCcEEEE
Q 003095 57 MWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHL 113 (848)
Q Consensus 57 ~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~Vil 113 (848)
-.+++|++++++|+..|++..+|. .+.+++.++.+++||.|..
T Consensus 16 ~l~~~l~~~~~~Gfd~VEl~~~~~--------------~~~~~~~~~l~~~Gl~v~~ 58 (258)
T PRK09989 16 PFIERFAAARKAGFDAVEFLFPYD--------------YSTLQIQKQLEQNHLTLAL 58 (258)
T ss_pred CHHHHHHHHHHcCCCEEEECCccc--------------CCHHHHHHHHHHcCCcEEE
Confidence 478999999999999999943321 2467888889999999874
No 90
>PLN02960 alpha-amylase
Probab=70.52 E-value=7.9 Score=48.61 Aligned_cols=56 Identities=20% Similarity=0.221 Sum_probs=39.4
Q ss_pred HHHHHHHhCCCCEEEE-ccc-------cCccCCc--CceeeecCcchHHHHHHHHHHcCcEEEEec
Q 003095 60 DLIQKSKDGGLDVIET-YVF-------WNLHEPV--RNQYNFEGRYDLVKFVKLVAEAGLYAHLRI 115 (848)
Q Consensus 60 d~l~k~ka~GlNtV~~-yv~-------Wn~hEp~--~G~ydF~g~~dl~~fl~la~~~GL~Vilrp 115 (848)
+.|.-+|++|+|+|+. .|+ |.+.-.- .=.-.|.+..+|.+|++.|+++||.|||-.
T Consensus 421 ~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~yGtp~dfk~LVd~aH~~GI~VILDv 486 (897)
T PLN02960 421 KVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRFGTPDDFKRLVDEAHGLGLLVFLDI 486 (897)
T ss_pred HHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 4688999999999996 343 4322110 001124455799999999999999999875
No 91
>PRK09505 malS alpha-amylase; Reviewed
Probab=70.43 E-value=7.6 Score=47.93 Aligned_cols=58 Identities=14% Similarity=0.178 Sum_probs=42.5
Q ss_pred HHHHHHHHHhCCCCEEEE-ccccCccCCc----Cc------------------eeeecCcchHHHHHHHHHHcCcEEEEe
Q 003095 58 WPDLIQKSKDGGLDVIET-YVFWNLHEPV----RN------------------QYNFEGRYDLVKFVKLVAEAGLYAHLR 114 (848)
Q Consensus 58 W~d~l~k~ka~GlNtV~~-yv~Wn~hEp~----~G------------------~ydF~g~~dl~~fl~la~~~GL~Vilr 114 (848)
+.+.|.-+|++|+|+|-+ .++=+.|... .| .-.|....+|++|++.|+++||+|||-
T Consensus 232 i~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD 311 (683)
T PRK09505 232 LTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFD 311 (683)
T ss_pred HHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 567888999999999985 4554443221 11 123455679999999999999999987
Q ss_pred c
Q 003095 115 I 115 (848)
Q Consensus 115 p 115 (848)
.
T Consensus 312 ~ 312 (683)
T PRK09505 312 V 312 (683)
T ss_pred E
Confidence 4
No 92
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=69.90 E-value=52 Score=35.17 Aligned_cols=42 Identities=24% Similarity=0.400 Sum_probs=34.8
Q ss_pred HHHHHHHHHhCCCCEEEEccccCccCCcCceeeecCcchHHHHHHHHHHcCcEEEE
Q 003095 58 WPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHL 113 (848)
Q Consensus 58 W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~Vil 113 (848)
++++|++++++|++.|+. |. + + ..+++++.++++++||.+..
T Consensus 17 l~~~l~~~a~~Gf~~VEl---~~---~----~----~~~~~~~~~~l~~~gl~~~~ 58 (258)
T PRK09997 17 FLARFEKAAQCGFRGVEF---MF---P----Y----DYDIEELKQVLASNKLEHTL 58 (258)
T ss_pred HHHHHHHHHHhCCCEEEE---cC---C----C----CCCHHHHHHHHHHcCCcEEE
Confidence 788999999999999998 32 1 1 13799999999999999854
No 93
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=69.60 E-value=35 Score=38.55 Aligned_cols=74 Identities=14% Similarity=0.218 Sum_probs=56.5
Q ss_pred eeCCCC---CcccHHHHHHHHHhCCCCEEEEccccCccCCcCceeeecCcc--hH--HHHHHHHHHcCcEEEEecCcccc
Q 003095 48 IHYPRS---TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRY--DL--VKFVKLVAEAGLYAHLRIGPYVC 120 (848)
Q Consensus 48 ~Hy~R~---~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~ydF~g~~--dl--~~fl~la~~~GL~VilrpGPYic 120 (848)
+|..|+ ..+..++.++++++.||..=.+.+-+.+++. .+.|.|...+ |. .++++..++.|++|++..=|+|+
T Consensus 13 ~~~s~~~y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~-~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~v~ 91 (339)
T cd06602 13 FHLCRWGYKNVDEVKEVVENMRAAGIPLDVQWNDIDYMDR-RRDFTLDPVRFPGLKMPEFVDELHANGQHYVPILDPAIS 91 (339)
T ss_pred hHhcCCCCCCHHHHHHHHHHHHHhCCCcceEEECcccccC-ccceecccccCCCccHHHHHHHHHHCCCEEEEEEeCccc
Confidence 455664 4667889999999999986665555444433 4677776543 77 99999999999999999999998
Q ss_pred cc
Q 003095 121 AE 122 (848)
Q Consensus 121 aE 122 (848)
.+
T Consensus 92 ~~ 93 (339)
T cd06602 92 AN 93 (339)
T ss_pred cC
Confidence 54
No 94
>PF14683 CBM-like: Polysaccharide lyase family 4, domain III; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=68.82 E-value=3.8 Score=41.62 Aligned_cols=63 Identities=27% Similarity=0.345 Sum_probs=28.2
Q ss_pred CCceEEEEECCeeeeecccccccCCCCCCCCCCcCCCcCccccccCCCCCcceeeccCccccccCCceEEEEEecC
Q 003095 647 GMGKGEAWVNGQSIGRYWPTYVSQNGGCTDSCNYRGAYSSNKCLKNCGKPSQSLYHVPRSWLKSSGNTLVLFEEIG 722 (848)
Q Consensus 647 g~gKG~vwVNG~nlGRYW~~~~g~~~g~~~~c~y~g~~~~~~c~~~c~gPqqtlYhVP~~~Lk~g~N~lvvfE~~g 722 (848)
.-++=+|.||| ..+..+....+ .++|-+|+.- -++-.+.--+.||+..|++|.|+|.|=-..|
T Consensus 91 ~~~~~~V~vNg-~~~~~~~~~~~-----~d~~~~r~g~-------~~G~~~~~~~~ipa~~L~~G~Nti~lt~~~g 153 (167)
T PF14683_consen 91 AGGRLQVSVNG-WSGPFPSAPFG-----NDNAIYRSGI-------HRGNYRLYEFDIPASLLKAGENTITLTVPSG 153 (167)
T ss_dssp TT-EEEEEETT-EE----------------S--GGGT----------S---EEEEEE-TTSS-SEEEEEEEEEE-S
T ss_pred CCCCEEEEEcC-ccCCccccccC-----CCCceeeCce-------ecccEEEEEEEEcHHHEEeccEEEEEEEccC
Confidence 34677999999 77776632222 1345554441 1111333445599999999999987643333
No 95
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=68.22 E-value=19 Score=41.49 Aligned_cols=54 Identities=15% Similarity=0.243 Sum_probs=43.1
Q ss_pred CCcccHHHHHHHHHhCCCCEEEEccccCccCCcCceeeecCcchHHHHHHHHHHcCcEEEEec
Q 003095 53 STPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRI 115 (848)
Q Consensus 53 ~~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~Vilrp 115 (848)
...+.|+++++.+|++||+....-+- ....+..+ .|...++.|++.|+++.|-+
T Consensus 14 yt~~dw~~di~~A~~~GIDgFaLNig------~~d~~~~~---~l~~a~~AA~~~gFKlf~Sf 67 (386)
T PF03659_consen 14 YTQEDWEADIRLAQAAGIDGFALNIG------SSDSWQPD---QLADAYQAAEAVGFKLFFSF 67 (386)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecc------cCCcccHH---HHHHHHHHHHhcCCEEEEEe
Confidence 37889999999999999999888554 22223333 78899999999999999875
No 96
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=68.21 E-value=7.3 Score=42.03 Aligned_cols=52 Identities=15% Similarity=0.369 Sum_probs=39.4
Q ss_pred cccHHHHHHHHHhCCCCEEEEccccCccCCcCceeeecCcchHHHHHHHHHHcCcEEEEecC
Q 003095 55 PEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIG 116 (848)
Q Consensus 55 ~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~VilrpG 116 (848)
+...++-|+.+|++||++|++ ..|..+.+ ..+..++|+.|+++|+.|+--.|
T Consensus 83 q~~~~~yl~~~k~lGf~~IEi---------SdGti~l~-~~~r~~~I~~~~~~Gf~v~~EvG 134 (244)
T PF02679_consen 83 QGKFDEYLEECKELGFDAIEI---------SDGTIDLP-EEERLRLIRKAKEEGFKVLSEVG 134 (244)
T ss_dssp TT-HHHHHHHHHHCT-SEEEE-----------SSS----HHHHHHHHHHHCCTTSEEEEEES
T ss_pred cChHHHHHHHHHHcCCCEEEe---------cCCceeCC-HHHHHHHHHHHHHCCCEEeeccc
Confidence 677899999999999999998 44555544 34778999999999999999887
No 97
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=68.04 E-value=78 Score=38.36 Aligned_cols=158 Identities=15% Similarity=0.144 Sum_probs=78.6
Q ss_pred ccHHHHHHHHHhCCCCEEEEc-cccCccCCcCcee--------eecCc----chHHHHHHHHHHcCcEEEEecCcccccc
Q 003095 56 EMWPDLIQKSKDGGLDVIETY-VFWNLHEPVRNQY--------NFEGR----YDLVKFVKLVAEAGLYAHLRIGPYVCAE 122 (848)
Q Consensus 56 ~~W~d~l~k~ka~GlNtV~~y-v~Wn~hEp~~G~y--------dF~g~----~dl~~fl~la~~~GL~VilrpGPYicaE 122 (848)
+.=+++|.+|+..-||.|+.| ..|.+|.|-|+.= |+.|+ .-+...|+.|++.|+.++.=--=|-.-+
T Consensus 118 ~~~~~~i~~L~~yHIN~~QFYDW~~rH~~Pl~~~~~~~~~~w~D~~~r~i~~~~Vk~yI~~ah~~Gmkam~Ynmiyaa~~ 197 (559)
T PF13199_consen 118 EDIEAEIDQLNRYHINGLQFYDWMYRHHKPLPGTNGQPDQTWTDWANRQISTSTVKDYINAAHKYGMKAMAYNMIYAANN 197 (559)
T ss_dssp HHHHHHHHHHHHTT--EEEETS--SBTTB-S-SSS-EEE-TT-TTT--EEEHHHHHHHHHHHHHTT-EEEEEEESSEEET
T ss_pred hhHHHHHHHHHhhCcCeEEEEeeccccCCcCCCCCCchhhhhhhhcCCEehHHHHHHHHHHHHHcCcceehhHhhhcccc
Confidence 456789999999999999999 8899999977533 23332 2578999999999999885432222222
Q ss_pred c--CCCCCCcccCc-CCCe------ee--------e---cCChhhHHHHHHHHHHHHHHHhhcccccccCCceEeecccc
Q 003095 123 W--NFGGFPLWLHF-IPGI------QF--------R---TDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIEN 182 (848)
Q Consensus 123 w--~~GG~P~WL~~-~p~~------~~--------R---t~d~~y~~~v~~~~~~l~~~l~~~~~~~~~gGpII~~QiEN 182 (848)
. ..|=.|.|.+- +++- .+ . ..++.|+++...=+.+.++.+.=..++.++=|+.--+ .+
T Consensus 198 ~~~~~gv~~eW~ly~d~~~~~~~~~~l~~~w~s~lyl~dP~N~~WQ~yI~~q~~~~~~~~gFDG~hlDq~G~~~~~--~d 275 (559)
T PF13199_consen 198 NYEEDGVSPEWGLYKDDSHSNQDTYDLPDGWPSDLYLMDPGNPEWQNYIINQMNKAIQNFGFDGWHLDQLGNRGTV--YD 275 (559)
T ss_dssp T--S--SS-GGBEEESSSBTSB-EEEETT-E--EEEEB-TT-HHHHHHHHHHHHHHHHHHT--EEEEE-S--EEEE--GG
T ss_pred CcccccCCchhhhhhccCCCccceeecCcccccceEEecCCCHHHHHHHHHHHHHHHHccCCceEeeeccCCCCcc--cc
Confidence 2 35667888753 3221 11 1 1245566655554555444443112223333333333 22
Q ss_pred cccccccccCcccHHHHHHHHHHHhhcCCCcceEEec
Q 003095 183 EYGNIDSAYGAAGKSYIKWAAGMALSLDTGVPWVMCQ 219 (848)
Q Consensus 183 Eyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~~ 219 (848)
.-|... + .-...|..+|.++-+.. -+.+++++.
T Consensus 276 ~~G~~i--~-~l~~~y~~Fi~~~K~~~-~~k~lv~N~ 308 (559)
T PF13199_consen 276 YDGNKI--Y-DLSDGYASFINAMKEAL-PDKYLVFNA 308 (559)
T ss_dssp TT---G--G-ECHHHHHHHHHHHHHHS-TTSEEEEB-
T ss_pred CCCCCc--h-hhHHHHHHHHHHHHHhC-CCCceeeec
Confidence 222110 0 12456777777766554 344566543
No 98
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=67.88 E-value=9.6 Score=45.90 Aligned_cols=55 Identities=18% Similarity=0.227 Sum_probs=40.5
Q ss_pred HHHHHHHHHhCCCCEEEE-ccccCccCCcC-cee----------eecCcchHHHHHHHHHHcCcEEEEec
Q 003095 58 WPDLIQKSKDGGLDVIET-YVFWNLHEPVR-NQY----------NFEGRYDLVKFVKLVAEAGLYAHLRI 115 (848)
Q Consensus 58 W~d~l~k~ka~GlNtV~~-yv~Wn~hEp~~-G~y----------dF~g~~dl~~fl~la~~~GL~Vilrp 115 (848)
+.++|.-+|++|+++|-+ .|+-+ |.. .-| +|....||.+|++.|+++||+|||-.
T Consensus 35 i~~~ldyl~~lGv~~i~l~P~~~~---~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~ 101 (551)
T PRK10933 35 VTQRLDYLQKLGVDAIWLTPFYVS---PQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDM 101 (551)
T ss_pred HHHhhHHHHhCCCCEEEECCCCCC---CCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 567889999999999986 45422 111 112 24456799999999999999999864
No 99
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=67.79 E-value=9.9 Score=34.10 Aligned_cols=50 Identities=18% Similarity=0.254 Sum_probs=33.9
Q ss_pred eEEEeCCcceEEEEEECCEEEEEEeccCCCCeeEEeeeecc-CCCCcEEEEEEeccCcc
Q 003095 500 TVLHVQSLGHALHAFINGKLVGSGYGSSSNAKVTVDFPIAL-APGKNTFDLLSLTVGLQ 557 (848)
Q Consensus 500 ~~L~i~~~~D~a~Vfvng~~vG~~~~~~~~~~~~~~~~i~l-~~g~~~L~ILven~Gr~ 557 (848)
..|++.+-....+-||||+++|...... .+. ..+ ..|.++|.+ +...|+.
T Consensus 34 l~l~a~~~~~~~~W~vdg~~~g~~~~~~---~~~----~~~~~~G~h~l~v-vD~~G~~ 84 (89)
T PF06832_consen 34 LVLKAAGGRGPVYWFVDGEPLGTTQPGH---QLF----WQPDRPGEHTLTV-VDAQGRS 84 (89)
T ss_pred EEEEEeCCCCcEEEEECCEEcccCCCCC---eEE----eCCCCCeeEEEEE-EcCCCCE
Confidence 4566554466999999999998764321 222 234 678899987 7777764
No 100
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=67.77 E-value=15 Score=39.81 Aligned_cols=71 Identities=10% Similarity=0.196 Sum_probs=53.1
Q ss_pred eeCCCC---CcccHHHHHHHHHhCCCCEEEEccccCccCCcCcee--eecC--cchHHHHHHHHHHcCcEEEEecCccc
Q 003095 48 IHYPRS---TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQY--NFEG--RYDLVKFVKLVAEAGLYAHLRIGPYV 119 (848)
Q Consensus 48 ~Hy~R~---~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~y--dF~g--~~dl~~fl~la~~~GL~VilrpGPYi 119 (848)
+|..|. ..+..++.++++++.||..=.+.+-+.+.+. .+.| +|+. --|..++++..++.|++|++..=|+|
T Consensus 13 ~~~~~~~~~~~~~v~~~~~~~~~~~iP~d~~~lD~~~~~~-~~~f~~~~d~~~Fpdp~~~i~~l~~~g~~~~~~~~P~v 90 (265)
T cd06589 13 YWLSRYGYGDQDKVLEVIDGMRENDIPLDGFVLDDDYTDG-YGDFTFDWDAGKFPNPKSMIDELHDNGVKLVLWIDPYI 90 (265)
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHcCCCccEEEECcccccC-CceeeeecChhhCCCHHHHHHHHHHCCCEEEEEeChhH
Confidence 344444 6677889999999999986666666555543 4556 5542 23899999999999999999988877
No 101
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=67.72 E-value=3.5 Score=38.10 Aligned_cols=17 Identities=47% Similarity=0.499 Sum_probs=12.2
Q ss_pred CCcchhHHHHHHHHHHH
Q 003095 1 MASKEILLLVLCWGFVV 17 (848)
Q Consensus 1 ~~~~~~~~~~~~~~~~~ 17 (848)
|++|.+|||.|++|++|
T Consensus 1 MaSK~~llL~l~LA~lL 17 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALL 17 (95)
T ss_pred CchhHHHHHHHHHHHHH
Confidence 99999877766655444
No 102
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=67.22 E-value=11 Score=40.31 Aligned_cols=111 Identities=14% Similarity=0.280 Sum_probs=69.7
Q ss_pred cccHHHHHHHHHhCCCCEEEEccc----------cCccCC--------------------cCceeeecCc---------c
Q 003095 55 PEMWPDLIQKSKDGGLDVIETYVF----------WNLHEP--------------------VRNQYNFEGR---------Y 95 (848)
Q Consensus 55 ~~~W~d~l~k~ka~GlNtV~~yv~----------Wn~hEp--------------------~~G~ydF~g~---------~ 95 (848)
.-.|+++|.-+|++||+.|+.-|. |.--|. .--+|-|... .
T Consensus 17 ~~sW~erl~~AK~~GFDFvEmSvDEsDeRLaRLDWs~~er~~l~~ai~etgv~ipSmClSaHRRfPfGS~D~~~r~~ale 96 (287)
T COG3623 17 GFSWLERLALAKELGFDFVEMSVDESDERLARLDWSKEERLALVNAIQETGVRIPSMCLSAHRRFPFGSKDEATRQQALE 96 (287)
T ss_pred CCCHHHHHHHHHHcCCCeEEEeccchHHHHHhcCCCHHHHHHHHHHHHHhCCCccchhhhhhccCCCCCCCHHHHHHHHH
Confidence 345999999999999999998775 765541 1135555432 2
Q ss_pred hHHHHHHHHHHcCcEEEEecCcccccccCCCCCCcccC-cCCCee----------------------eecCChhhHHHHH
Q 003095 96 DLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLH-FIPGIQ----------------------FRTDNEPFKAEMQ 152 (848)
Q Consensus 96 dl~~fl~la~~~GL~VilrpGPYicaEw~~GG~P~WL~-~~p~~~----------------------~Rt~d~~y~~~v~ 152 (848)
-..+-|+||++.|+++|=-.| +=.+.- .+++.+ +-..|.+|+....
T Consensus 97 iM~KaI~LA~dLGIRtIQLAG-----------YDVYYE~~d~eT~~rFi~g~~~a~~lA~~aqV~lAvEiMDtpfm~sIs 165 (287)
T COG3623 97 IMEKAIQLAQDLGIRTIQLAG-----------YDVYYEEADEETRQRFIEGLKWAVELAARAQVMLAVEIMDTPFMNSIS 165 (287)
T ss_pred HHHHHHHHHHHhCceeEeecc-----------ceeeeccCCHHHHHHHHHHHHHHHHHHHhhccEEEeeecccHHHHHHH
Confidence 356789999999999995533 332322 233321 1235888998888
Q ss_pred HHHHHHHHHHhhcccc--cccCCceEee
Q 003095 153 RFTAKIVDMMKQEKLY--ASQGGPIILS 178 (848)
Q Consensus 153 ~~~~~l~~~l~~~~~~--~~~gGpII~~ 178 (848)
||..-. ++|.. |++ |.+=|++-+|
T Consensus 166 k~~~~~-~~I~s-P~f~vYPDiGNlsaw 191 (287)
T COG3623 166 KWLKYD-KYINS-PWFTVYPDIGNLSAW 191 (287)
T ss_pred HHHHHH-HHhCC-CcEEecCCcccHhhh
Confidence 887643 34432 433 4455555444
No 103
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=66.80 E-value=9.3 Score=46.53 Aligned_cols=55 Identities=18% Similarity=0.365 Sum_probs=37.3
Q ss_pred HHHHHHHhCCCCEEEE-ccc---------------cCccC-----CcCceee----ec--CcchHHHHHHHHHHcCcEEE
Q 003095 60 DLIQKSKDGGLDVIET-YVF---------------WNLHE-----PVRNQYN----FE--GRYDLVKFVKLVAEAGLYAH 112 (848)
Q Consensus 60 d~l~k~ka~GlNtV~~-yv~---------------Wn~hE-----p~~G~yd----F~--g~~dl~~fl~la~~~GL~Vi 112 (848)
+.|.-+|++|+|+|+. .|+ |.+.- |+ +.|- |. ...+|.+|++.|+++||.||
T Consensus 168 ~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~-~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~Vi 246 (605)
T TIGR02104 168 TGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPE-GSYSTNPYDPATRIRELKQMIQALHENGIRVI 246 (605)
T ss_pred hHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcC-hhhhcCCCccchHHHHHHHHHHHHHHCCCEEE
Confidence 4589999999999996 343 33221 11 0110 11 12689999999999999999
Q ss_pred Eec
Q 003095 113 LRI 115 (848)
Q Consensus 113 lrp 115 (848)
|-.
T Consensus 247 lDv 249 (605)
T TIGR02104 247 MDV 249 (605)
T ss_pred EEE
Confidence 874
No 104
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=65.66 E-value=30 Score=39.73 Aligned_cols=122 Identities=13% Similarity=0.094 Sum_probs=67.2
Q ss_pred CcCceeeecCcchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCcccCcCCCe----eeecC-ChhhHHHHHHHHHHH
Q 003095 84 PVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLHFIPGI----QFRTD-NEPFKAEMQRFTAKI 158 (848)
Q Consensus 84 p~~G~ydF~g~~dl~~fl~la~~~GL~VilrpGPYicaEw~~GG~P~WL~~~p~~----~~Rt~-d~~y~~~v~~~~~~l 158 (848)
+..|.|||+....=..||+.|++.|+..++-. .=-.|.|+...-.. ...++ -+...++...|+..+
T Consensus 93 ~~dg~yDW~~D~gQrwfL~~Ak~rGV~~f~aF---------SNSPP~~MT~NG~~~g~~~~~~NLk~d~y~~FA~YLa~V 163 (384)
T PF14587_consen 93 PADGSYDWDADAGQRWFLKAAKERGVNIFEAF---------SNSPPWWMTKNGSASGGDDGSDNLKPDNYDAFADYLADV 163 (384)
T ss_dssp -TTS-B-TTSSHHHHHHHHHHHHTT---EEEE----------SSS-GGGSSSSSSB-S-SSS-SS-TT-HHHHHHHHHHH
T ss_pred CCCCCcCCCCCHHHHHHHHHHHHcCCCeEEEe---------ecCCCHHHhcCCCCCCCCccccccChhHHHHHHHHHHHH
Confidence 46799999987777789999999999987754 13478888752210 00111 245567777788888
Q ss_pred HHHHhhcccccccCCceEeecccccccccc-------cccC-cccHHHHHHHHHHHhhcCCCcceEEecC
Q 003095 159 VDMMKQEKLYASQGGPIILSQIENEYGNID-------SAYG-AAGKSYIKWAAGMALSLDTGVPWVMCQQ 220 (848)
Q Consensus 159 ~~~l~~~~~~~~~gGpII~~QiENEyg~~~-------~~~~-~~~~~y~~~l~~~~~~~g~~vp~~~~~~ 220 (848)
+++++.+ |=+|=-+-.=||....= +.+. +.....++.|...+++.|+..-+..|+.
T Consensus 164 v~~~~~~------GI~f~~IsP~NEP~~~W~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~t~I~~~Ea 227 (384)
T PF14587_consen 164 VKHYKKW------GINFDYISPFNEPQWNWAGGSQEGCHFTNEEQADVIRALDKALKKRGLSTKISACEA 227 (384)
T ss_dssp HHHHHCT------T--EEEEE--S-TTS-GG--SS-B----HHHHHHHHHHHHHHHHHHT-S-EEEEEEE
T ss_pred HHHHHhc------CCccceeCCcCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEecch
Confidence 8777533 33566666679986420 1111 1245788889999999998876665554
No 105
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=65.39 E-value=14 Score=40.97 Aligned_cols=68 Identities=18% Similarity=0.308 Sum_probs=52.7
Q ss_pred CCCCcccHHHHHHHHHhCCCC--EEEEccccCccCCcCceeeecC--cchHHHHHHHHHHcCcEEEEecCccccc
Q 003095 51 PRSTPEMWPDLIQKSKDGGLD--VIETYVFWNLHEPVRNQYNFEG--RYDLVKFVKLVAEAGLYAHLRIGPYVCA 121 (848)
Q Consensus 51 ~R~~~~~W~d~l~k~ka~GlN--tV~~yv~Wn~hEp~~G~ydF~g--~~dl~~fl~la~~~GL~VilrpGPYica 121 (848)
.....+.-++.++++++.||. +|-+-..|- ..-|.|.|.- --|..++++..++.|+++++..=|||..
T Consensus 25 ~~~s~~~v~~~~~~~~~~~iP~d~i~iD~~w~---~~~g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~ 96 (303)
T cd06592 25 ADINQETVLNYAQEIIDNGFPNGQIEIDDNWE---TCYGDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINT 96 (303)
T ss_pred cCcCHHHHHHHHHHHHHcCCCCCeEEeCCCcc---ccCCccccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCC
Confidence 456788889999999999965 666666663 3457676653 2489999999999999999988787753
No 106
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=65.07 E-value=43 Score=35.97 Aligned_cols=92 Identities=13% Similarity=0.169 Sum_probs=60.9
Q ss_pred HHHHHHHHHhCCCCEEEEccccCccCCcCcee-eecCcchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCcccCcCC
Q 003095 58 WPDLIQKSKDGGLDVIETYVFWNLHEPVRNQY-NFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLHFIP 136 (848)
Q Consensus 58 W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~y-dF~g~~dl~~fl~la~~~GL~VilrpGPYicaEw~~GG~P~WL~~~p 136 (848)
-++.|+++.++|++.|+.. ..+|+.-.- +++ ..+++++.++++++||.+.+. +||.
T Consensus 12 ~~~~~~~~~~~G~~~vel~----~~~~~~~~~~~~~-~~~~~~l~~~~~~~gl~ls~h-~p~~----------------- 68 (273)
T smart00518 12 LYKAFIEAVDIGARSFQLF----LGNPRSWKGVRLS-EETAEKFKEALKENNIDVSVH-APYL----------------- 68 (273)
T ss_pred HhHHHHHHHHcCCCEEEEE----CCCCCCCCCCCCC-HHHHHHHHHHHHHcCCCEEEE-CCce-----------------
Confidence 3578999999999999983 333322110 222 236899999999999987653 3432
Q ss_pred CeeeecCChhhHHHHHHHHHHHHHHHhhcccccccCCceEeec
Q 003095 137 GIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQ 179 (848)
Q Consensus 137 ~~~~Rt~d~~y~~~v~~~~~~l~~~l~~~~~~~~~gGpII~~Q 179 (848)
+.+.+.|+..+++..+++++.++..+ .+ |.++|.+.
T Consensus 69 -~nl~s~d~~~r~~~~~~l~~~i~~A~--~l----Ga~~vv~h 104 (273)
T smart00518 69 -INLASPDKEKVEKSIERLIDEIKRCE--EL----GIKALVFH 104 (273)
T ss_pred -ecCCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEEc
Confidence 12345677777887788888887766 23 56666654
No 107
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=64.24 E-value=9 Score=45.97 Aligned_cols=59 Identities=17% Similarity=0.103 Sum_probs=40.7
Q ss_pred ccHHHHHHHHHhCCCCEEEE-ccccC---ccCCcCcee-----eecCcchHHHHHHHHHHcCcEEEEe
Q 003095 56 EMWPDLIQKSKDGGLDVIET-YVFWN---LHEPVRNQY-----NFEGRYDLVKFVKLVAEAGLYAHLR 114 (848)
Q Consensus 56 ~~W~d~l~k~ka~GlNtV~~-yv~Wn---~hEp~~G~y-----dF~g~~dl~~fl~la~~~GL~Vilr 114 (848)
.-+.+.|.-+|++|+|+|-. .|+=+ -|--.+-.| .|.+..|+.++++.|+++||+|||-
T Consensus 28 ~gi~~~Ldyl~~LGv~~i~L~Pi~~~~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD 95 (539)
T TIGR02456 28 PGLTSKLDYLKWLGVDALWLLPFFQSPLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIID 95 (539)
T ss_pred HHHHHhHHHHHHCCCCEEEECCCcCCCCCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEE
Confidence 34677899999999999986 34411 010000011 2455679999999999999999985
No 108
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=64.08 E-value=11 Score=42.10 Aligned_cols=71 Identities=15% Similarity=0.205 Sum_probs=52.3
Q ss_pred eeCCCC---CcccHHHHHHHHHhCCCCEEEEccccCccCCcCc--eeeecCcc--hHHHHHHHHHHcCcEEEEecCccc
Q 003095 48 IHYPRS---TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRN--QYNFEGRY--DLVKFVKLVAEAGLYAHLRIGPYV 119 (848)
Q Consensus 48 ~Hy~R~---~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G--~ydF~g~~--dl~~fl~la~~~GL~VilrpGPYi 119 (848)
+|..|+ ..+.-++.++++++.||..=.+.+-|.... ..+ .|+|+-.+ |..+||+..++.|++|++..=|+|
T Consensus 13 ~~~sr~~y~~~~ev~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~~~f~~d~~~FPdp~~mi~~L~~~G~kv~~~i~P~v 90 (319)
T cd06591 13 FWQSKERYKTQEELLDVAKEYRKRGIPLDVIVQDWFYWP-KQGWGEWKFDPERFPDPKAMVRELHEMNAELMISIWPTF 90 (319)
T ss_pred HHHhcccCCCHHHHHHHHHHHHHhCCCccEEEEechhhc-CCCceeEEEChhhCCCHHHHHHHHHHCCCEEEEEecCCc
Confidence 344554 556678899999999888766666655443 234 77776543 899999999999999998776666
No 109
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=62.42 E-value=25 Score=29.44 Aligned_cols=55 Identities=15% Similarity=0.108 Sum_probs=43.5
Q ss_pred cccHHHHHHHHHhCCCCEEEEccccCccCCcCceeeecCcchHHHHHHHHHHcCcEEEE
Q 003095 55 PEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHL 113 (848)
Q Consensus 55 ~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~Vil 113 (848)
|..-.+.++-+.+.|+|...+|++= ++. ++.+.+.. .|.++..+..+++|..|.|
T Consensus 12 pG~La~v~~~l~~~~inI~~i~~~~--~~~-~~~~rl~~-~~~~~~~~~L~~~G~~v~~ 66 (66)
T cd04908 12 PGRLAAVTEILSEAGINIRALSIAD--TSE-FGILRLIV-SDPDKAKEALKEAGFAVKL 66 (66)
T ss_pred CChHHHHHHHHHHCCCCEEEEEEEe--cCC-CCEEEEEE-CCHHHHHHHHHHCCCEEEC
Confidence 4566788999999999999999732 333 58887765 5778999999999988754
No 110
>PF11324 DUF3126: Protein of unknown function (DUF3126); InterPro: IPR021473 This family of proteins with unknown function appear to be restricted to Alphaproteobacteria.
Probab=61.82 E-value=14 Score=31.54 Aligned_cols=24 Identities=13% Similarity=0.346 Sum_probs=20.2
Q ss_pred CcceEEEEEECCEEEEEEeccCCC
Q 003095 506 SLGHALHAFINGKLVGSGYGSSSN 529 (848)
Q Consensus 506 ~~~D~a~Vfvng~~vG~~~~~~~~ 529 (848)
...|.|.||++++|+|+++++...
T Consensus 25 k~~dsaEV~~g~EfiGvi~~Dede 48 (63)
T PF11324_consen 25 KKDDSAEVYIGDEFIGVIYRDEDE 48 (63)
T ss_pred CCCCceEEEeCCEEEEEEEeecCC
Confidence 457899999999999999986543
No 111
>PF08531 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal domain; InterPro: IPR013737 This domain is found in bacterial rhamnosidase A and B enzymes and is probably involved in substrate recognition. ; PDB: 2OKX_B.
Probab=61.41 E-value=28 Score=35.37 Aligned_cols=55 Identities=27% Similarity=0.384 Sum_probs=30.3
Q ss_pred eEEEeCCcceEEEEEECCEEEEEEe--ccCC--CCee---EEeeeeccCCCCcEEEEEEeccC
Q 003095 500 TVLHVQSLGHALHAFINGKLVGSGY--GSSS--NAKV---TVDFPIALAPGKNTFDLLSLTVG 555 (848)
Q Consensus 500 ~~L~i~~~~D~a~Vfvng~~vG~~~--~~~~--~~~~---~~~~~i~l~~g~~~L~ILven~G 555 (848)
..|.|.... +..+||||+.||.-. .... .+.. ++++.--|+.|.|+|.+++-+..
T Consensus 6 A~l~isa~g-~Y~l~vNG~~V~~~~l~P~~t~y~~~~~Y~tyDVt~~L~~G~N~iav~lg~gw 67 (172)
T PF08531_consen 6 ARLYISALG-RYELYVNGERVGDGPLAPGWTDYDKRVYYQTYDVTPYLRPGENVIAVWLGNGW 67 (172)
T ss_dssp -EEEEEEES-EEEEEETTEEEEEE--------BTTEEEEEEEE-TTT--TTEEEEEEEEEE--
T ss_pred EEEEEEeCe-eEEEEECCEEeeCCccccccccCCCceEEEEEeChHHhCCCCCEEEEEEeCCc
Confidence 456665443 568999999998643 1111 1122 34433337789999999997644
No 112
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=59.65 E-value=34 Score=37.43 Aligned_cols=75 Identities=23% Similarity=0.362 Sum_probs=58.0
Q ss_pred EEECCEEeEEEEEEeeCCCC-CcccHHHHHHHHHhCCCCEEEEccccCccCCcCceeeec--CcchHHHHHHHHHHcCcE
Q 003095 34 VVIGGKRRVLISGSIHYPRS-TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFE--GRYDLVKFVKLVAEAGLY 110 (848)
Q Consensus 34 f~~dG~p~~~~sG~~Hy~R~-~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~ydF~--g~~dl~~fl~la~~~GL~ 110 (848)
+.+.+.+++++.|=- -+ +++.-.+.-+++|++|+..++.|.+=+-.. -+.|. |...+..+-+.+++.||.
T Consensus 21 ~~~g~~~~~~iaGPC---sie~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs----~~s~~G~g~~gl~~l~~~~~~~Gl~ 93 (266)
T PRK13398 21 VVIGGEEKIIIAGPC---AVESEEQMVKVAEKLKELGVHMLRGGAFKPRTS----PYSFQGLGEEGLKILKEVGDKYNLP 93 (266)
T ss_pred EEEcCCCEEEEEeCC---cCCCHHHHHHHHHHHHHcCCCEEEEeeecCCCC----CCccCCcHHHHHHHHHHHHHHcCCC
Confidence 667767888998822 22 567778888999999999999998874333 33555 577899999999999999
Q ss_pred EEEec
Q 003095 111 AHLRI 115 (848)
Q Consensus 111 Vilrp 115 (848)
++-.|
T Consensus 94 ~~te~ 98 (266)
T PRK13398 94 VVTEV 98 (266)
T ss_pred EEEee
Confidence 88764
No 113
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=59.12 E-value=4.2 Score=43.26 Aligned_cols=53 Identities=13% Similarity=0.152 Sum_probs=44.3
Q ss_pred HHHHHHHHhCCCCEEEEccccCccCCcCceeeecCcchHHHHHHHHHHcCcEEEEe
Q 003095 59 PDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLR 114 (848)
Q Consensus 59 ~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~Vilr 114 (848)
-...+++.++|.+.|.+.++|....+..-.+... ++.++.+.|++.||.||+.
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~~~~~~~~~~~---~i~~v~~~~~~~gl~vIlE 131 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGALGSGNEDEVIE---EIAAVVEECHKYGLKVILE 131 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHHHTTHHHHHHH---HHHHHHHHHHTSEEEEEEE
T ss_pred HHHHHHHHHcCCceeeeeccccccccccHHHHHH---HHHHHHHHHhcCCcEEEEE
Confidence 5678899999999999999998776655445555 8999999999999999998
No 114
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=58.78 E-value=17 Score=40.55 Aligned_cols=67 Identities=10% Similarity=0.121 Sum_probs=48.9
Q ss_pred CcccHHHHHHHHHhCCCCEEEEccccCccCC-----cCceeeecCc--chHHHHHHHHHHcCcEEEEecCcccc
Q 003095 54 TPEMWPDLIQKSKDGGLDVIETYVFWNLHEP-----VRNQYNFEGR--YDLVKFVKLVAEAGLYAHLRIGPYVC 120 (848)
Q Consensus 54 ~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp-----~~G~ydF~g~--~dl~~fl~la~~~GL~VilrpGPYic 120 (848)
..+..++.++++++.||..=.+.+-+.++.. .-|.|+|+-. -|..++++..+++|++|++..=|+|+
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~ 95 (317)
T cd06598 22 NWQEVDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVL 95 (317)
T ss_pred CHHHHHHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCccc
Confidence 4566789999999999876555554333332 2356776543 38999999999999999998766663
No 115
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=58.26 E-value=48 Score=37.39 Aligned_cols=72 Identities=11% Similarity=0.153 Sum_probs=56.2
Q ss_pred eeCCCC---CcccHHHHHHHHHhCCCCEEEEccccCccCCcCceeeecCcc--hHHHHHHHHHHcCcEEEEecCcccc
Q 003095 48 IHYPRS---TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRY--DLVKFVKLVAEAGLYAHLRIGPYVC 120 (848)
Q Consensus 48 ~Hy~R~---~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~ydF~g~~--dl~~fl~la~~~GL~VilrpGPYic 120 (848)
+|..|+ ..+..++..+++++.+|-.=.+++-|.+++ .-+.|.|...+ |..++++..++.|+++++..=|+|.
T Consensus 13 ~~qsr~~Y~~~~ev~~v~~~~r~~~IP~D~i~lDidy~~-~~~~Ft~d~~~FPdp~~mv~~L~~~G~klv~~i~P~i~ 89 (332)
T cd06601 13 FHQGCYGYSNRSDLEEVVEGYRDNNIPLDGLHVDVDFQD-NYRTFTTNGGGFPNPKEMFDNLHNKGLKCSTNITPVIS 89 (332)
T ss_pred hhhCCCCCCCHHHHHHHHHHHHHcCCCCceEEEcCchhc-CCCceeecCCCCCCHHHHHHHHHHCCCeEEEEecCcee
Confidence 566665 567788899999999988666666665554 34677776543 8899999999999999998889887
No 116
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=57.64 E-value=19 Score=45.32 Aligned_cols=62 Identities=16% Similarity=0.061 Sum_probs=44.2
Q ss_pred CcccHHHHHHHHHhCCCCEEEE-ccccC----ccCCcC-----ceeeecCcchHHHHHHHHHHcCcEEEEec
Q 003095 54 TPEMWPDLIQKSKDGGLDVIET-YVFWN----LHEPVR-----NQYNFEGRYDLVKFVKLVAEAGLYAHLRI 115 (848)
Q Consensus 54 ~~~~W~d~l~k~ka~GlNtV~~-yv~Wn----~hEp~~-----G~ydF~g~~dl~~fl~la~~~GL~Vilrp 115 (848)
+-+.|.+.|.-++++|+++|-+ .|+=+ .|--.. =.-.|.+..++.+|++.|+++||.||+-.
T Consensus 14 tf~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDi 85 (825)
T TIGR02401 14 TFDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDI 85 (825)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 3456889999999999999975 34311 111100 01235578899999999999999999875
No 117
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=57.01 E-value=17 Score=43.04 Aligned_cols=113 Identities=14% Similarity=0.167 Sum_probs=80.5
Q ss_pred cHHHHHHHHHhCCCCEEEEccccCccCCc---CceeeecCcchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCcccC
Q 003095 57 MWPDLIQKSKDGGLDVIETYVFWNLHEPV---RNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLH 133 (848)
Q Consensus 57 ~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~---~G~ydF~g~~dl~~fl~la~~~GL~VilrpGPYicaEw~~GG~P~WL~ 133 (848)
.++++++.||++|++.-+.-|.|+-.=|. .+.-+-.|......+|+...++||...+-. | =| .+|.||.
T Consensus 92 ~ykeDv~Lmk~lgv~afRFSIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTL--f---Hw---DlPq~Le 163 (524)
T KOG0626|consen 92 RYKEDVKLMKELGVDAFRFSISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTL--F---HW---DLPQALE 163 (524)
T ss_pred hhHHHHHHHHHcCCCeEEEEeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEE--e---cC---CCCHHHH
Confidence 58999999999999999999999987774 356788888888999999999999966543 1 13 3688887
Q ss_pred c-CCCeeeecCChhhHHHHHHHHHHHHHHHhhcccccccCCceEeec
Q 003095 134 F-IPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQ 179 (848)
Q Consensus 134 ~-~p~~~~Rt~d~~y~~~v~~~~~~l~~~l~~~~~~~~~gGpII~~Q 179 (848)
. +-+-.-+..=..|+++++--|+++..++| .+..=|...|..++
T Consensus 164 DeYgGwLn~~ivedF~~yA~~CF~~fGDrVK--~WiT~NEP~v~s~~ 208 (524)
T KOG0626|consen 164 DEYGGWLNPEIVEDFRDYADLCFQEFGDRVK--HWITFNEPNVFSIG 208 (524)
T ss_pred HHhccccCHHHHHHHHHHHHHHHHHhcccce--eeEEecccceeeee
Confidence 5 44422222234577777777888777776 33333445554444
No 118
>PLN02361 alpha-amylase
Probab=56.90 E-value=22 Score=41.26 Aligned_cols=57 Identities=9% Similarity=0.023 Sum_probs=39.5
Q ss_pred HHHHHHHHhCCCCEEEEccccC---ccCCcCce-e----eecCcchHHHHHHHHHHcCcEEEEec
Q 003095 59 PDLIQKSKDGGLDVIETYVFWN---LHEPVRNQ-Y----NFEGRYDLVKFVKLVAEAGLYAHLRI 115 (848)
Q Consensus 59 ~d~l~k~ka~GlNtV~~yv~Wn---~hEp~~G~-y----dF~g~~dl~~fl~la~~~GL~Vilrp 115 (848)
.+.|.-++++|+++|-+.=+.. .|--.+.. | .|....+|.++++.|++.||+||+-.
T Consensus 32 ~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~ 96 (401)
T PLN02361 32 EGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADI 96 (401)
T ss_pred HHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEE
Confidence 4566778999999998753322 22222222 2 24556799999999999999999864
No 119
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=56.72 E-value=19 Score=38.73 Aligned_cols=54 Identities=7% Similarity=0.268 Sum_probs=43.9
Q ss_pred CcccHHHHHHHHHhCCCCEEEEccccCccCCcCceeeecCcchHHHHHHHHHHcCcEEEEecCc
Q 003095 54 TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGP 117 (848)
Q Consensus 54 ~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~VilrpGP 117 (848)
.....++-|+..|+.||++|++ ..|..+++ ..+..++|+.+++.||+|+--.|.
T Consensus 69 ~q~~~~~Yl~~~k~lGf~~IEi---------S~G~~~i~-~~~~~rlI~~~~~~g~~v~~EvG~ 122 (237)
T TIGR03849 69 SKGKFDEYLNECDELGFEAVEI---------SDGSMEIS-LEERCNLIERAKDNGFMVLSEVGK 122 (237)
T ss_pred HhhhHHHHHHHHHHcCCCEEEE---------cCCccCCC-HHHHHHHHHHHHhCCCeEeccccc
Confidence 3367788888999999999998 45666655 347889999999999999987763
No 120
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=56.39 E-value=18 Score=40.75 Aligned_cols=74 Identities=11% Similarity=0.059 Sum_probs=54.2
Q ss_pred eeCCCC---CcccHHHHHHHHHhCCCCEEEEccccCccCCcCceeeecCcc--hHHHHHHHHHHcCcEEEEecCcccccc
Q 003095 48 IHYPRS---TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRY--DLVKFVKLVAEAGLYAHLRIGPYVCAE 122 (848)
Q Consensus 48 ~Hy~R~---~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~ydF~g~~--dl~~fl~la~~~GL~VilrpGPYicaE 122 (848)
+|..|. ..++-++.++++++.||..=.+.+-+.+. ...+.|+|+-.+ |..+|++..++.|++|++..=|+|+.+
T Consensus 13 ~~~sr~~y~~~~ev~~~~~~~~~~~iP~d~i~lD~~~~-~~~~~f~~d~~~FPdp~~mi~~L~~~G~k~~~~~~P~v~~~ 91 (339)
T cd06603 13 YHQCRWNYKDQEDVKEVDAGFDEHDIPYDVIWLDIEHT-DGKRYFTWDKKKFPDPEKMQEKLASKGRKLVTIVDPHIKRD 91 (339)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHcCCCceEEEEChHHh-CCCCceEeCcccCCCHHHHHHHHHHCCCEEEEEecCceecC
Confidence 455554 45667888999999998865555543322 345677776433 899999999999999999988888743
No 121
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=56.03 E-value=24 Score=39.67 Aligned_cols=72 Identities=24% Similarity=0.258 Sum_probs=57.6
Q ss_pred EEEEeeCCCCCcccHHHHHHHHHhCCCCEEEEccccCccCCcCce-eeecCcchHHHHHHHHHHcCcEEEEecCcccccc
Q 003095 44 ISGSIHYPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQ-YNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAE 122 (848)
Q Consensus 44 ~sG~~Hy~R~~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~-ydF~g~~dl~~fl~la~~~GL~VilrpGPYicaE 122 (848)
++=++.+.|.+.+.=..-|++|...|+..|=| ++|.|++.. --|. -+.++++.|++.||+||+-.-|=|.-|
T Consensus 4 ~GfSifp~~~~~~~~~~Yi~~~~~~Gf~~IFt----sl~~~~~~~~~~~~---~~~ell~~Anklg~~vivDvnPsil~~ 76 (360)
T COG3589 4 LGFSIFPNRSPKEKDIAYIDRMHKYGFKRIFT----SLLIPEEDAELYFH---RFKELLKEANKLGLRVIVDVNPSILKE 76 (360)
T ss_pred eeEEeccCCCcchhHHHHHHHHHHcCccceee----ecccCCchHHHHHH---HHHHHHHHHHhcCcEEEEEcCHHHHhh
Confidence 55678888888888888999999999988766 778877652 1233 688999999999999999988876554
No 122
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=55.07 E-value=35 Score=37.56 Aligned_cols=109 Identities=17% Similarity=0.220 Sum_probs=69.9
Q ss_pred EEEEEEeeCCCCCcc-cHH---HHHHHHHhCCCCEEEEccccCccCCcCceeeecCcchHHHHHHHHHHcCcEEEEecCc
Q 003095 42 VLISGSIHYPRSTPE-MWP---DLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGP 117 (848)
Q Consensus 42 ~~~sG~~Hy~R~~~~-~W~---d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~VilrpGP 117 (848)
+-+++..|++.-|.. ..+ ++|++-.++|.+.+-|-.+ ||.+ .+.+|++.|++.|+.+=+.||.
T Consensus 130 f~igva~~Pe~Hp~~~~~~~d~~~L~~Ki~aGA~f~iTQ~~----------Fd~~---~~~~f~~~~~~~gi~~PIi~GI 196 (281)
T TIGR00677 130 FCIGVAGYPEGHPEAESVELDLKYLKEKVDAGADFIITQLF----------YDVD---NFLKFVNDCRAIGIDCPIVPGI 196 (281)
T ss_pred eEEEEEECCCCCCCCCCHHHHHHHHHHHHHcCCCEeeccce----------ecHH---HHHHHHHHHHHcCCCCCEEeec
Confidence 468888888764322 222 3454444699999999544 4544 7899999999997765445554
Q ss_pred ccc---------cccCCCCCCcccCcCCCeeeecCChhhHHHHHHHHHHHHHHHhh
Q 003095 118 YVC---------AEWNFGGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQ 164 (848)
Q Consensus 118 Yic---------aEw~~GG~P~WL~~~p~~~~Rt~d~~y~~~v~~~~~~l~~~l~~ 164 (848)
..+ +||..--+|.|+.+.=. ....+++...+.--++..++++.+.+
T Consensus 197 ~pi~s~~~~~~~~~~~Gi~vP~~l~~~l~-~~~~~~~~~~~~gi~~a~~~~~~l~~ 251 (281)
T TIGR00677 197 MPINNYASFLRRAKWSKTKIPQEIMSRLE-PIKDDDEAVRDYGIELIVEMCQKLLA 251 (281)
T ss_pred cccCCHHHHHHHHhcCCCCCCHHHHHHHH-hccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 333 57877778999975100 01223345566677777778777763
No 123
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=54.75 E-value=20 Score=40.11 Aligned_cols=72 Identities=7% Similarity=0.111 Sum_probs=52.6
Q ss_pred eeCCCC---CcccHHHHHHHHHhCCCCEEEEccccCccCCcCceeeecCc--chHHHHHHHHHHcCcEEEEecCcccc
Q 003095 48 IHYPRS---TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGR--YDLVKFVKLVAEAGLYAHLRIGPYVC 120 (848)
Q Consensus 48 ~Hy~R~---~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~ydF~g~--~dl~~fl~la~~~GL~VilrpGPYic 120 (848)
+|..|+ ..+..++.++++++.+|..=.+.+-+.+.. .-+.|+|+.. -|..+|++..++.|++|++..=|+|.
T Consensus 13 ~~~sr~~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~f~~d~~~FPdp~~~i~~l~~~g~k~~~~~~P~i~ 89 (317)
T cd06600 13 YHISRYSYYPQDKVVEVVDIMQKEGFPYDVVFLDIHYMD-SYRLFTWDPYRFPEPKKLIDELHKRNVKLVTIVDPGIR 89 (317)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHcCCCcceEEEChhhhC-CCCceeechhcCCCHHHHHHHHHHCCCEEEEEeecccc
Confidence 455554 566778999999999987655544433222 3466777543 38999999999999999998877775
No 124
>COG3915 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.62 E-value=56 Score=32.16 Aligned_cols=47 Identities=19% Similarity=0.269 Sum_probs=35.6
Q ss_pred HHHHHHhCCCCEEEEccccCccCCcCceeeecCcc--hHHHHHHHHHHcCcEEEE
Q 003095 61 LIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRY--DLVKFVKLVAEAGLYAHL 113 (848)
Q Consensus 61 ~l~k~ka~GlNtV~~yv~Wn~hEp~~G~ydF~g~~--dl~~fl~la~~~GL~Vil 113 (848)
.++.+.|.+--||+|-.+|- .|.-.|+|.+ +|-+.+. |+...+.||.
T Consensus 39 t~qeLeal~~~T~ete~Pw~-----~gn~rf~Gvsls~Ll~~l~-ak~tslt~iA 87 (155)
T COG3915 39 TLQELEALPDETIETETPWT-----QGNTRFKGVSLSALLAWLG-AKQTSLTVIA 87 (155)
T ss_pred cHHHHhcCCcceEEEecCcc-----cCceeecceeHHHHHHHhh-ccCcceEEEE
Confidence 35678889999999999995 4667788863 6666666 6666777775
No 125
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=53.97 E-value=24 Score=44.70 Aligned_cols=60 Identities=17% Similarity=0.177 Sum_probs=44.8
Q ss_pred CcccHHHHHHHHHhCCCCEEEEc-cccCccCCcCce------e-------eecCcchHHHHHHHHHHcCcEEEEecCc
Q 003095 54 TPEMWPDLIQKSKDGGLDVIETY-VFWNLHEPVRNQ------Y-------NFEGRYDLVKFVKLVAEAGLYAHLRIGP 117 (848)
Q Consensus 54 ~~~~W~d~l~k~ka~GlNtV~~y-v~Wn~hEp~~G~------y-------dF~g~~dl~~fl~la~~~GL~VilrpGP 117 (848)
+-+-|.+.|.-++++|+|+|-.- ++ +..+|. . .|.+..++.+|++.|+++||.|||-.=|
T Consensus 18 tf~~~~~~l~YL~~LGis~IyLsPi~----~a~~gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV~ 91 (879)
T PRK14511 18 TFDDAAELVPYFADLGVSHLYLSPIL----AARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIVP 91 (879)
T ss_pred CHHHHHHHhHHHHHcCCCEEEECcCc----cCCCCCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 45568999999999999999863 33 112221 1 2456789999999999999999987644
No 126
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=53.62 E-value=24 Score=43.13 Aligned_cols=58 Identities=24% Similarity=0.323 Sum_probs=41.1
Q ss_pred cccHHHHHHHHHhCCCCEEEE-ccc-------cCccCCcCcee----eecCcchHHHHHHHHHHcCcEEEEe
Q 003095 55 PEMWPDLIQKSKDGGLDVIET-YVF-------WNLHEPVRNQY----NFEGRYDLVKFVKLVAEAGLYAHLR 114 (848)
Q Consensus 55 ~~~W~d~l~k~ka~GlNtV~~-yv~-------Wn~hEp~~G~y----dF~g~~dl~~fl~la~~~GL~Vilr 114 (848)
.+.=.+.|--+|+||+++|+. .|. |.+.-. |-| .|..-.||.+||+.|+++||-|||-
T Consensus 164 ~e~a~~llpYl~elG~T~IELMPv~e~p~~~sWGYq~~--g~yAp~sryGtPedfk~fVD~aH~~GIgViLD 233 (628)
T COG0296 164 FELAIELLPYLKELGITHIELMPVAEHPGDRSWGYQGT--GYYAPTSRYGTPEDFKALVDAAHQAGIGVILD 233 (628)
T ss_pred HHHHHHHhHHHHHhCCCEEEEcccccCCCCCCCCCCcc--eeccccccCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 444566888899999999996 232 543210 111 2334469999999999999999985
No 127
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=53.17 E-value=27 Score=38.95 Aligned_cols=73 Identities=16% Similarity=0.129 Sum_probs=51.6
Q ss_pred eeCCCCC--------cccHHHHHHHHHhCCCCEEEEccccCccCC---cCceeeecCc--chHHHHHHHHHHcCcEEEEe
Q 003095 48 IHYPRST--------PEMWPDLIQKSKDGGLDVIETYVFWNLHEP---VRNQYNFEGR--YDLVKFVKLVAEAGLYAHLR 114 (848)
Q Consensus 48 ~Hy~R~~--------~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp---~~G~ydF~g~--~dl~~fl~la~~~GL~Vilr 114 (848)
+|..|+. .+.-.+.++++++.||..=.+.+-+.+..- ....|+|.-. -|..++++..+++|++|++.
T Consensus 13 ~~~sr~~Y~~~~~~~q~~v~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~~~~ 92 (317)
T cd06599 13 YSGSTMYYTELDPDAQEALLEFIDKCREHDIPCDSFHLSSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRLAPN 92 (317)
T ss_pred HHhcCCCCCCCCccHHHHHHHHHHHHHHcCCCeeEEEEeccccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEEEEE
Confidence 5666652 345678899999999987666554333322 2334666533 38999999999999999998
Q ss_pred cCcccc
Q 003095 115 IGPYVC 120 (848)
Q Consensus 115 pGPYic 120 (848)
.=|+|+
T Consensus 93 i~P~i~ 98 (317)
T cd06599 93 IKPGLL 98 (317)
T ss_pred eCCccc
Confidence 877764
No 128
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=52.85 E-value=27 Score=38.55 Aligned_cols=70 Identities=17% Similarity=0.253 Sum_probs=50.0
Q ss_pred eeCCCC---CcccHHHHHHHHHhCCCCEEEEccccCccCC--------cCceeeecCc--chHHHHHHHHHHcCcEEEEe
Q 003095 48 IHYPRS---TPEMWPDLIQKSKDGGLDVIETYVFWNLHEP--------VRNQYNFEGR--YDLVKFVKLVAEAGLYAHLR 114 (848)
Q Consensus 48 ~Hy~R~---~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp--------~~G~ydF~g~--~dl~~fl~la~~~GL~Vilr 114 (848)
+|..|. +.+.-++.++++|+.||..=.+++-..+|.- .-+.|.|+-. -|..++++..++.|++|++.
T Consensus 14 ~~qsr~~y~s~~ev~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~ 93 (292)
T cd06595 14 NWWSRYWPYSDEEYLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLN 93 (292)
T ss_pred hHhhCCcCCCHHHHHHHHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEE
Confidence 344553 5667789999999999986666554333331 2356777643 39999999999999999987
Q ss_pred cCc
Q 003095 115 IGP 117 (848)
Q Consensus 115 pGP 117 (848)
+=|
T Consensus 94 v~P 96 (292)
T cd06595 94 LHP 96 (292)
T ss_pred eCC
Confidence 644
No 129
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=51.89 E-value=20 Score=41.73 Aligned_cols=19 Identities=37% Similarity=0.620 Sum_probs=16.4
Q ss_pred CcCC--CCCCCCcceEEEEEE
Q 003095 828 NTFG--DPCKGVMKSLAVEAS 846 (848)
Q Consensus 828 ~~Fg--DPCpgt~KyL~V~Y~ 846 (848)
.+-| |||||.-|-|+|.|+
T Consensus 498 ~lpGFydpc~ge~K~L~I~Yt 518 (546)
T KOG0718|consen 498 GLPGFYDPCPGEPKELEIVYT 518 (546)
T ss_pred cCCcccCCCCCCccEEEEEEE
Confidence 3445 999999999999997
No 130
>KOG2024 consensus Beta-Glucuronidase GUSB (glycosylhydrolase superfamily 2) [Carbohydrate transport and metabolism]
Probab=50.99 E-value=27 Score=38.06 Aligned_cols=57 Identities=19% Similarity=0.348 Sum_probs=41.9
Q ss_pred CcchhhhcCC---CCCcceEEEEEEEecCCCCccccCCCceEEEeCCcceEEEEEECCEEE
Q 003095 463 PGLLEQINTT---ADQSDYLWYSLSTNIKADEPLLEDGSKTVLHVQSLGHALHAFINGKLV 520 (848)
Q Consensus 463 ~~~~Eql~~t---~d~~Gyl~Y~t~i~~~~~~~~~~~~~~~~L~i~~~~D~a~Vfvng~~v 520 (848)
|.++-++++. .|..|.+||+.++.++.+.. .-.++...|++.+.+-.|.|+|||.-+
T Consensus 71 pss~nDi~~d~~lrdfv~~~wyer~v~vpe~w~-~~~~~r~vlr~~s~H~~Aivwvng~~~ 130 (297)
T KOG2024|consen 71 PSSFNDIGQDWRLRDFVGLVWYERTVTVPESWT-QDLGKRVVLRIGSAHSYAIVWVNGVDA 130 (297)
T ss_pred ccchhccccCCccccceeeeEEEEEEEcchhhh-hhcCCeEEEEeecccceeEEEEcceee
Confidence 4556666654 46789999999998765431 112345789999999999999998764
No 131
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=50.95 E-value=21 Score=47.06 Aligned_cols=56 Identities=21% Similarity=0.347 Sum_probs=38.8
Q ss_pred HHHHHHHhCCCCEEEE-ccccCccCCc---Cce-----e----------eec--CcchHHHHHHHHHHcCcEEEEec
Q 003095 60 DLIQKSKDGGLDVIET-YVFWNLHEPV---RNQ-----Y----------NFE--GRYDLVKFVKLVAEAGLYAHLRI 115 (848)
Q Consensus 60 d~l~k~ka~GlNtV~~-yv~Wn~hEp~---~G~-----y----------dF~--g~~dl~~fl~la~~~GL~Vilrp 115 (848)
+.|.-+|++|+|+|+. .|+=+..|.. .|. | .|. +..++.++++.|+++||.|||-.
T Consensus 191 ~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VILDv 267 (1221)
T PRK14510 191 EAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVILDV 267 (1221)
T ss_pred hhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEEEEEE
Confidence 4566899999999996 4553322211 110 2 123 56799999999999999999874
No 132
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=50.93 E-value=33 Score=38.42 Aligned_cols=62 Identities=10% Similarity=0.164 Sum_probs=45.2
Q ss_pred eCCCCCcccHHHHHHHHHhCCCCEEEEccc--cCcc---CC------------------------cCceeeecCcchHHH
Q 003095 49 HYPRSTPEMWPDLIQKSKDGGLDVIETYVF--WNLH---EP------------------------VRNQYNFEGRYDLVK 99 (848)
Q Consensus 49 Hy~R~~~~~W~d~l~k~ka~GlNtV~~yv~--Wn~h---Ep------------------------~~G~ydF~g~~dl~~ 99 (848)
||+ +.+..++.|+.|-..++|++..++- |.+- .| ..|.|. ..|+.+
T Consensus 12 ~~~--~~~~ik~~id~ma~~K~N~lhlHltD~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT---~~di~e 86 (326)
T cd06564 12 KYY--SMDFLKDIIKTMSWYKMNDLQLHLNDNLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYT---KEEFKE 86 (326)
T ss_pred CCC--CHHHHHHHHHHHHHcCCceEEEeecCCcccccCCCchhhhhhhhhccccccccccCCCCCCCCccc---HHHHHH
Confidence 553 7889999999999999999997543 2221 11 122232 349999
Q ss_pred HHHHHHHcCcEEEEec
Q 003095 100 FVKLVAEAGLYAHLRI 115 (848)
Q Consensus 100 fl~la~~~GL~Vilrp 115 (848)
+++.|++.|+.||.-+
T Consensus 87 iv~yA~~rgI~vIPEI 102 (326)
T cd06564 87 LIAYAKDRGVNIIPEI 102 (326)
T ss_pred HHHHHHHcCCeEeccC
Confidence 9999999999998643
No 133
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=50.83 E-value=21 Score=41.41 Aligned_cols=70 Identities=10% Similarity=0.263 Sum_probs=47.9
Q ss_pred CcccHHHHHHHHHhCCCCEEEEccccCccCCcCceeeecCc--chHHHHHHHHHHcCcEEEEecCcccccccC
Q 003095 54 TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGR--YDLVKFVKLVAEAGLYAHLRIGPYVCAEWN 124 (848)
Q Consensus 54 ~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~ydF~g~--~dl~~fl~la~~~GL~VilrpGPYicaEw~ 124 (848)
..+...+.++.+++.||-.=...+...+.. ..+.|.|+.. -|...+++..++.|++|++..-|+|.-+-.
T Consensus 41 ~~~~v~~~i~~~~~~~iP~d~~~iD~~~~~-~~~~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~~~ 112 (441)
T PF01055_consen 41 NQDEVREVIDRYRSNGIPLDVIWIDDDYQD-GYGDFTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSNDSP 112 (441)
T ss_dssp SHHHHHHHHHHHHHTT--EEEEEE-GGGSB-TTBTT-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEETTTT
T ss_pred CHHHHHHHHHHHHHcCCCccceeccccccc-cccccccccccccchHHHHHhHhhCCcEEEEEeecccCCCCC
Confidence 466678999999999998766665544333 4446666543 289999999999999999998888865543
No 134
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=50.28 E-value=27 Score=39.25 Aligned_cols=72 Identities=14% Similarity=0.160 Sum_probs=51.7
Q ss_pred eeCCCC---CcccHHHHHHHHHhCCCCEEEEccccCccCCcCceeeecCc--chHHHHHHHHHHcCcEEEEecCcccc
Q 003095 48 IHYPRS---TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGR--YDLVKFVKLVAEAGLYAHLRIGPYVC 120 (848)
Q Consensus 48 ~Hy~R~---~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~ydF~g~--~dl~~fl~la~~~GL~VilrpGPYic 120 (848)
+|..|. ..+..++.++++++.||..=.+.+-+.+.. .-+.|+|.-. -|..+|++..++.|++|++..=|+|+
T Consensus 13 ~~~s~~~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~f~~d~~~fPdp~~m~~~l~~~g~~~~~~~~P~v~ 89 (339)
T cd06604 13 YQQSRWSYYPEEEVREIADEFRERDIPCDAIYLDIDYMD-GYRVFTWDKERFPDPKELIKELHEQGFKVVTIIDPGVK 89 (339)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHhCCCcceEEECchhhC-CCCceeeccccCCCHHHHHHHHHHCCCEEEEEEeCcee
Confidence 455554 456678899999999987544444433333 3455766543 37899999999999999988877775
No 135
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=50.23 E-value=23 Score=43.94 Aligned_cols=55 Identities=18% Similarity=0.295 Sum_probs=36.6
Q ss_pred HHHHHHhCCCCEEEE-ccccCccC---CcCc-----ee---e-------e---cCcchHHHHHHHHHHcCcEEEEec
Q 003095 61 LIQKSKDGGLDVIET-YVFWNLHE---PVRN-----QY---N-------F---EGRYDLVKFVKLVAEAGLYAHLRI 115 (848)
Q Consensus 61 ~l~k~ka~GlNtV~~-yv~Wn~hE---p~~G-----~y---d-------F---~g~~dl~~fl~la~~~GL~Vilrp 115 (848)
.|.-+|++|+|+|.. .|+=...+ ...| -| | | ....+|.+|++.|+++||.|||-.
T Consensus 189 ~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDv 265 (688)
T TIGR02100 189 MIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDV 265 (688)
T ss_pred hhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 377899999999995 45411111 1111 01 1 1 124689999999999999999874
No 136
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=50.16 E-value=18 Score=30.83 Aligned_cols=39 Identities=28% Similarity=0.548 Sum_probs=23.7
Q ss_pred EEEeCCcceEEEEEECCEEEEEEeccCCCCeeEEeeeeccCCCCcEEEE
Q 003095 501 VLHVQSLGHALHAFINGKLVGSGYGSSSNAKVTVDFPIALAPGKNTFDL 549 (848)
Q Consensus 501 ~L~i~~~~D~a~Vfvng~~vG~~~~~~~~~~~~~~~~i~l~~g~~~L~I 549 (848)
.|.|...=..|.|||||+++|... ..+. .++.|.++|.|
T Consensus 3 ~l~V~s~p~gA~V~vdg~~~G~tp-------~~~~---~l~~G~~~v~v 41 (71)
T PF08308_consen 3 TLRVTSNPSGAEVYVDGKYIGTTP-------LTLK---DLPPGEHTVTV 41 (71)
T ss_pred EEEEEEECCCCEEEECCEEeccCc-------ceee---ecCCccEEEEE
Confidence 345544444689999999999432 1111 25567766655
No 137
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=49.40 E-value=77 Score=31.80 Aligned_cols=102 Identities=17% Similarity=0.141 Sum_probs=61.8
Q ss_pred ccHHHHHHHHHhCCCCEEEEccc--cCccC-----CcCceeeecCcchHHHHHHHHHHcCcEEE-EecCcccccccCCCC
Q 003095 56 EMWPDLIQKSKDGGLDVIETYVF--WNLHE-----PVRNQYNFEGRYDLVKFVKLVAEAGLYAH-LRIGPYVCAEWNFGG 127 (848)
Q Consensus 56 ~~W~d~l~k~ka~GlNtV~~yv~--Wn~hE-----p~~G~ydF~g~~dl~~fl~la~~~GL~Vi-lrpGPYicaEw~~GG 127 (848)
...++..+.+++.|+..+....+ |.... +.+. .-.....+.+.+++|++.|...+ +.+|.
T Consensus 27 ~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~--r~~~~~~~~~~i~~a~~lg~~~i~~~~g~---------- 94 (213)
T PF01261_consen 27 DEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDE--REEALEYLKKAIDLAKRLGAKYIVVHSGR---------- 94 (213)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSH--HHHHHHHHHHHHHHHHHHTBSEEEEECTT----------
T ss_pred HHHHHHHHHHHHcCCeEEEEecccccccccccccCcchh--hHHHHHHHHHHHHHHHHhCCCceeecCcc----------
Confidence 34566777888999997665444 44321 1111 11123489999999999999865 54442
Q ss_pred CCcccCcCCCeeeecCChhhHHHHHHHHHHHHHHHhhcccccccCCceEeecccccccc
Q 003095 128 FPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGN 186 (848)
Q Consensus 128 ~P~WL~~~p~~~~Rt~d~~y~~~v~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~ 186 (848)
|-.. + ......-++.+.+.+++++++.+++ | +.+-+||..+.
T Consensus 95 ---~~~~-~----~~~~~~~~~~~~~~l~~l~~~a~~~-------g--v~i~lE~~~~~ 136 (213)
T PF01261_consen 95 ---YPSG-P----EDDTEENWERLAENLRELAEIAEEY-------G--VRIALENHPGP 136 (213)
T ss_dssp ---ESSS-T----TSSHHHHHHHHHHHHHHHHHHHHHH-------T--SEEEEE-SSSS
T ss_pred ---cccc-c----CCCHHHHHHHHHHHHHHHHhhhhhh-------c--ceEEEecccCc
Confidence 1000 1 1123356677888888998888743 2 44667888874
No 138
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=49.22 E-value=1.3e+02 Score=34.10 Aligned_cols=44 Identities=23% Similarity=0.216 Sum_probs=28.4
Q ss_pred ecceEEECCEEeEEEEEEeeCCCCCcccHHHHH-HHHHhCCCCEEEE
Q 003095 30 DHRAVVIGGKRRVLISGSIHYPRSTPEMWPDLI-QKSKDGGLDVIET 75 (848)
Q Consensus 30 d~~~f~~dG~p~~~~sG~~Hy~R~~~~~W~d~l-~k~ka~GlNtV~~ 75 (848)
|.+.+.|||||+++|=..-.- .....+-+.+ +.+|++|+.-|-+
T Consensus 150 D~rYikVdGKPv~~Iy~p~~~--pd~~~~~~~wr~~a~~~G~~giyi 194 (345)
T PF14307_consen 150 DPRYIKVDGKPVFLIYRPGDI--PDIKEMIERWREEAKEAGLPGIYI 194 (345)
T ss_pred CCCceeECCEEEEEEECcccc--cCHHHHHHHHHHHHHHcCCCceEE
Confidence 788899999999988554222 1222333333 4568899985544
No 139
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=48.50 E-value=4.4 Score=48.81 Aligned_cols=77 Identities=16% Similarity=0.181 Sum_probs=60.5
Q ss_pred cccccccCCCCCcccccccCcCCCCCCCceeeecCCCCceEEEEeeeecCCCCCCCCCCCCCcccCCchHHHHHHHccCC
Q 003095 739 LCSHVTDSHPLPVDMWGSDSKIQRKPGPVLSLECPNPNQVISSIKFASFGTPLGTCGSFSRGRCSSARSLSVVRQACVGS 818 (848)
Q Consensus 739 ic~~v~~~~~~~~~~~~~~~~~~~ce~~~~~L~C~~~g~~I~~I~~A~YGr~~~~C~~~~~~~C~~~~s~~~V~~~C~Gk 818 (848)
+|.+..+.|..++ ...+.|.+++.++.+|..|.||..++.|+.+....|.++++...+...|-.+
T Consensus 313 l~~~pk~ghlk~~---------------hts~d~~ep~lv~gd~~~~kyg~~~~~C~~Fl~n~~~~~~~~v~f~~~~y~~ 377 (649)
T KOG0496|consen 313 LLRQPKYGHLKPL---------------HTSYDYCEPALVAGDITTAKYGNLREACAAFLSNNNGAPAAPVPFNKPKYRL 377 (649)
T ss_pred hhcCCCccccccc---------------hhhhhhcCccccccCcccccccchhhHHHHHHhcCCCCCCCccccCCCcccc
Confidence 6776666666432 1223333367788889999999998899999889999999999999999999
Q ss_pred CceEEeecCCcC
Q 003095 819 KSCSIGVSVNTF 830 (848)
Q Consensus 819 ~~C~v~~~~~~F 830 (848)
..|+|....+.+
T Consensus 378 ~~~slsilpdck 389 (649)
T KOG0496|consen 378 PPWSLSILPDCK 389 (649)
T ss_pred CceeEEechhhc
Confidence 999999876544
No 140
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=48.31 E-value=31 Score=46.63 Aligned_cols=59 Identities=15% Similarity=0.170 Sum_probs=45.2
Q ss_pred CcccHHHHHHHHHhCCCCEEEEc-cccCccCCcCce---e----------eecCcchHHHHHHHHHHcCcEEEEecC
Q 003095 54 TPEMWPDLIQKSKDGGLDVIETY-VFWNLHEPVRNQ---Y----------NFEGRYDLVKFVKLVAEAGLYAHLRIG 116 (848)
Q Consensus 54 ~~~~W~d~l~k~ka~GlNtV~~y-v~Wn~hEp~~G~---y----------dF~g~~dl~~fl~la~~~GL~VilrpG 116 (848)
+-+-|.+.|.-+|++|+|+|-.- |+ +..+|. | .|.+..++.+|++.|+++||.|||-.=
T Consensus 756 tf~~~~~~l~Yl~~LGv~~i~lsPi~----~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDiV 828 (1693)
T PRK14507 756 TFADAEAILPYLAALGISHVYASPIL----KARPGSTHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDIV 828 (1693)
T ss_pred CHHHHHHHhHHHHHcCCCEEEECCCc----CCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 55679999999999999999863 33 222221 1 245778999999999999999998753
No 141
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=47.76 E-value=84 Score=34.88 Aligned_cols=66 Identities=17% Similarity=0.100 Sum_probs=46.6
Q ss_pred CcccHHHHHHHHHhCCCCEEEEccc----cCcc-CC--cCceeeecCcchHHHHHHHHHHcCcEEEEecCcccccc
Q 003095 54 TPEMWPDLIQKSKDGGLDVIETYVF----WNLH-EP--VRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAE 122 (848)
Q Consensus 54 ~~~~W~d~l~k~ka~GlNtV~~yv~----Wn~h-Ep--~~G~ydF~g~~dl~~fl~la~~~GL~VilrpGPYicaE 122 (848)
+.++-++.++.|...|+|.+..|+- +.-+ |- .+|.|.= .++.++++.|++.|+.||.-+--.-+.|
T Consensus 15 ~~~~lk~~id~ma~~k~N~l~lhl~D~f~~~~~p~~~~~~~~yT~---~ei~ei~~yA~~~gI~vIPeid~pGH~~ 87 (301)
T cd06565 15 KVSYLKKLLRLLALLGANGLLLYYEDTFPYEGEPEVGRMRGAYTK---EEIREIDDYAAELGIEVIPLIQTLGHLE 87 (301)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEecceecCCCcccccCCCCcCH---HHHHHHHHHHHHcCCEEEecCCCHHHHH
Confidence 4577899999999999999998753 3211 11 1334433 4999999999999999997653333433
No 142
>PRK03705 glycogen debranching enzyme; Provisional
Probab=46.28 E-value=31 Score=42.62 Aligned_cols=55 Identities=25% Similarity=0.302 Sum_probs=36.4
Q ss_pred HHHHHHhCCCCEEEE-ccccCccCCcC---c-----eee----------ecCc-----chHHHHHHHHHHcCcEEEEec
Q 003095 61 LIQKSKDGGLDVIET-YVFWNLHEPVR---N-----QYN----------FEGR-----YDLVKFVKLVAEAGLYAHLRI 115 (848)
Q Consensus 61 ~l~k~ka~GlNtV~~-yv~Wn~hEp~~---G-----~yd----------F~g~-----~dl~~fl~la~~~GL~Vilrp 115 (848)
.|.-+|++|+|+|+. .|+=...++.. | -|| |... .++.++++.|+++||.|||-.
T Consensus 184 ~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~ygt~~~~~~~efk~LV~~~H~~GI~VIlDv 262 (658)
T PRK03705 184 MIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAYASGPETALDEFRDAVKALHKAGIEVILDV 262 (658)
T ss_pred chHHHHHcCCCEEEecCcccCCCcccccccccccccCcccccccccccccCCCCcchHHHHHHHHHHHHHCCCEEEEEE
Confidence 488899999999995 44422111110 1 011 2221 479999999999999999874
No 143
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=45.94 E-value=32 Score=44.86 Aligned_cols=21 Identities=10% Similarity=0.283 Sum_probs=19.3
Q ss_pred chHHHHHHHHHHcCcEEEEec
Q 003095 95 YDLVKFVKLVAEAGLYAHLRI 115 (848)
Q Consensus 95 ~dl~~fl~la~~~GL~Vilrp 115 (848)
.+|.++++.|+++||.|||-.
T Consensus 555 ~EfK~LV~alH~~GI~VILDV 575 (1111)
T TIGR02102 555 AEFKNLINEIHKRGMGVILDV 575 (1111)
T ss_pred HHHHHHHHHHHHCCCEEEEec
Confidence 589999999999999999874
No 144
>KOG4729 consensus Galactoside-binding lectin [General function prediction only]
Probab=45.67 E-value=25 Score=38.07 Aligned_cols=85 Identities=6% Similarity=-0.107 Sum_probs=61.7
Q ss_pred CCCCCceeeecCCCCceEEEEeeeecCCCC---CCCCCC----CCCcccCCchHHHHHHHccCCCceEEeecCCcCCCCC
Q 003095 762 RKPGPVLSLECPNPNQVISSIKFASFGTPL---GTCGSF----SRGRCSSARSLSVVRQACVGSKSCSIGVSVNTFGDPC 834 (848)
Q Consensus 762 ~ce~~~~~L~C~~~g~~I~~I~~A~YGr~~---~~C~~~----~~~~C~~~~s~~~V~~~C~Gk~~C~v~~~~~~FgDPC 834 (848)
.|..+.+...|+ ....+ .+..+.+++.+ ..|..- ..-.|.....+..+...|.+++.|++..++.-++-+|
T Consensus 139 ~~~p~~~~~~~~-~~~~~-~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ct~~~~~~~~~~~~ 216 (265)
T KOG4729|consen 139 FCTPSPTDPPRS-EIRLE-CREGRRLAVYSAVMKTSPQKDPETEIRHECVSSVLPQLLRQCHAKEGCTLKSDGIKGHCRH 216 (265)
T ss_pred EecCCCCCCccC-cccch-hhhcccccccccccccCCCCcccCCCCceeecccchhhhhcccccCCceeecCCccccccc
Confidence 477777888888 77666 58888888863 345431 1223334566778889999999999999998888888
Q ss_pred CCC-cceEEEEEEeC
Q 003095 835 KGV-MKSLAVEASCT 848 (848)
Q Consensus 835 pgt-~KyL~V~Y~C~ 848 (848)
-.. -+|+-|.+.|+
T Consensus 217 ~~~~~~~~~~n~e~~ 231 (265)
T KOG4729|consen 217 GHLHKVYVTVTEEIF 231 (265)
T ss_pred cceeEEEEEeccccc
Confidence 544 57888888764
No 145
>PRK12677 xylose isomerase; Provisional
Probab=45.66 E-value=1.9e+02 Score=33.45 Aligned_cols=89 Identities=12% Similarity=0.136 Sum_probs=54.2
Q ss_pred cHHHHHHHHHhCCCCEEEEccccCccCCcCceeeec---CcchHHHHHHHHHHcCcEEE-EecCcccccccCCCCCCccc
Q 003095 57 MWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFE---GRYDLVKFVKLVAEAGLYAH-LRIGPYVCAEWNFGGFPLWL 132 (848)
Q Consensus 57 ~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~ydF~---g~~dl~~fl~la~~~GL~Vi-lrpGPYicaEw~~GG~P~WL 132 (848)
-+.+.+++++++|+..|+.. .+..--|+.+ -...++++.+++++.||.|. +-|.-|.+..+..|
T Consensus 32 ~~~E~v~~~a~~Gf~gVElh------~~~l~p~~~~~~~~~~~~~~lk~~l~~~GL~v~~v~~n~f~~p~~~~g------ 99 (384)
T PRK12677 32 DPVEAVHKLAELGAYGVTFH------DDDLVPFGATDAERDRIIKRFKKALDETGLVVPMVTTNLFTHPVFKDG------ 99 (384)
T ss_pred CHHHHHHHHHHhCCCEEEec------ccccCCCCCChhhhHHHHHHHHHHHHHcCCeeEEEecCCCCCccccCC------
Confidence 47899999999999999883 1111112221 11258999999999999976 43321111111122
Q ss_pred CcCCCeeeecCChhhHHHHHHHHHHHHHHHh
Q 003095 133 HFIPGIQFRTDNEPFKAEMQRFTAKIVDMMK 163 (848)
Q Consensus 133 ~~~p~~~~Rt~d~~y~~~v~~~~~~l~~~l~ 163 (848)
.+-+.|+..++...+.+.+.++.-+
T Consensus 100 ------~lts~d~~~R~~Ai~~~~r~IdlA~ 124 (384)
T PRK12677 100 ------AFTSNDRDVRRYALRKVLRNIDLAA 124 (384)
T ss_pred ------cCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 1334577777776666666666555
No 146
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=44.08 E-value=71 Score=36.28 Aligned_cols=60 Identities=18% Similarity=0.194 Sum_probs=45.6
Q ss_pred CCcccHHHHHHHHHhCCCCEEEEccc----cCccC----------------------------CcCceeeecCcchHHHH
Q 003095 53 STPEMWPDLIQKSKDGGLDVIETYVF----WNLHE----------------------------PVRNQYNFEGRYDLVKF 100 (848)
Q Consensus 53 ~~~~~W~d~l~k~ka~GlNtV~~yv~----Wn~hE----------------------------p~~G~ydF~g~~dl~~f 100 (848)
.+.+..++.++.|...++|+...++. |.+-- +..|.|-- .|+.++
T Consensus 15 ~~~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~~~YT~---~di~ei 91 (357)
T cd06563 15 FPVDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYGGFYTQ---EEIREI 91 (357)
T ss_pred cCHHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccCceECH---HHHHHH
Confidence 36888999999999999999998763 43221 11234433 499999
Q ss_pred HHHHHHcCcEEEEec
Q 003095 101 VKLVAEAGLYAHLRI 115 (848)
Q Consensus 101 l~la~~~GL~Vilrp 115 (848)
++.|++.|+.||.-+
T Consensus 92 v~yA~~rgI~VIPEI 106 (357)
T cd06563 92 VAYAAERGITVIPEI 106 (357)
T ss_pred HHHHHHcCCEEEEec
Confidence 999999999999754
No 147
>PRK09267 flavodoxin FldA; Validated
Probab=43.75 E-value=1.2e+02 Score=30.28 Aligned_cols=74 Identities=9% Similarity=0.048 Sum_probs=49.1
Q ss_pred ECCEEeEEEEEEeeCCCCCcccHHHHHHHHHhCCCCEEEEccccCccCCcCceeeecCcchHHHHHHHHHHcCcEEE
Q 003095 36 IGGKRRVLISGSIHYPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAH 112 (848)
Q Consensus 36 ~dG~p~~~~sG~~Hy~R~~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~Vi 112 (848)
+..-..++++...|....++..|.+-|++++...++-..+.+|= ......-.-.|. .-+..+-++.++.|..++
T Consensus 44 l~~~d~vi~g~pt~~~G~~~~~~~~fl~~~~~~~l~~k~vaifg-~g~~~~~~~~~~--~~~~~l~~~l~~~g~~~v 117 (169)
T PRK09267 44 FEAYDLLILGIPTWGYGELQCDWDDFLPELEEIDFSGKKVALFG-LGDQEDYAEYFC--DAMGTLYDIVEPRGATIV 117 (169)
T ss_pred HhhCCEEEEEecCcCCCCCCHHHHHHHHHHhcCCCCCCEEEEEe-cCCCCcchHHHH--HHHHHHHHHHHHCCCEEE
Confidence 44556789999999878888999999998888777777777772 221111111122 235667777888896654
No 148
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=43.75 E-value=35 Score=37.74 Aligned_cols=59 Identities=24% Similarity=0.324 Sum_probs=42.4
Q ss_pred CcccHHHHHHHHHhCCCCEEEEccccCc---cCCcCc--------eeeecCcchHHHHHHHHHHcCcEEEEec
Q 003095 54 TPEMWPDLIQKSKDGGLDVIETYVFWNL---HEPVRN--------QYNFEGRYDLVKFVKLVAEAGLYAHLRI 115 (848)
Q Consensus 54 ~~~~W~d~l~k~ka~GlNtV~~yv~Wn~---hEp~~G--------~ydF~g~~dl~~fl~la~~~GL~Vilrp 115 (848)
.+..-.++++.+|..|+|++-+-+==.+ .-|... +=.|- |+..||+.|+|.|||+|.|.
T Consensus 75 ~kk~~de~fk~ikdn~~Na~ViD~Kdd~G~lty~s~d~~~~~~~sv~~f~---Di~~~iKkaKe~giY~IARi 144 (400)
T COG1306 75 LKKRLDELFKLIKDNNINAFVIDVKDDYGELTYPSSDEINKYTKSVNKFK---DIEPVIKKAKENGIYAIARI 144 (400)
T ss_pred ChhHHHHHHHHHHhCCCCEEEEEecCCCccEeccccchhhhhhhcccccc---ccHHHHHHHHhcCeEEEEEE
Confidence 5666788999999999999876443111 111111 11243 99999999999999999996
No 149
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=42.82 E-value=30 Score=39.54 Aligned_cols=88 Identities=16% Similarity=0.198 Sum_probs=67.9
Q ss_pred CCeeEEEecceEEECCEEeEEEEEEeeCCC-CCcccHHHHHHHHHhC-CCCEEEEccccCccCCcCceeeecCcchHHHH
Q 003095 23 FGANVTYDHRAVVIGGKRRVLISGSIHYPR-STPEMWPDLIQKSKDG-GLDVIETYVFWNLHEPVRNQYNFEGRYDLVKF 100 (848)
Q Consensus 23 ~~~~v~~d~~~f~~dG~p~~~~sG~~Hy~R-~~~~~W~d~l~k~ka~-GlNtV~~yv~Wn~hEp~~G~ydF~g~~dl~~f 100 (848)
+...|-+-+-+|-+...+-....=|+.|+- .|.+.|+-+|..+.++ -=||+..-| =|=+.|--++|.-. .|.+.
T Consensus 149 p~aNILlPrPGfp~Y~~~a~~~~lEVR~ydlLPe~~weIDL~~veal~DENT~Aivv-iNP~NPcGnVys~~---HL~ki 224 (447)
T KOG0259|consen 149 PGANILLPRPGFPLYDTRAIYSGLEVRYYDLLPEKDWEIDLDGVEALADENTVAIVV-INPNNPCGNVYSED---HLKKI 224 (447)
T ss_pred CCCceecCCCCCchHHHhhhhcCceeEeecccCcccceechHHHHHhhccCeeEEEE-eCCCCCCcccccHH---HHHHH
Confidence 445565555566665555555555666555 5889999999999987 789998855 47888888999887 99999
Q ss_pred HHHHHHcCcEEEEe
Q 003095 101 VKLVAEAGLYAHLR 114 (848)
Q Consensus 101 l~la~~~GL~Vilr 114 (848)
+++|+++|+-||.-
T Consensus 225 ae~A~klgi~vIaD 238 (447)
T KOG0259|consen 225 AETAKKLGIMVIAD 238 (447)
T ss_pred HHHHHHhCCeEEeh
Confidence 99999999988863
No 150
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=42.65 E-value=33 Score=30.78 Aligned_cols=48 Identities=19% Similarity=0.270 Sum_probs=25.7
Q ss_pred ccCCceEeeccccc-ccccccccC----c-ccHHHHHHHHHHHh---hcCCCcceEE
Q 003095 170 SQGGPIILSQIENE-YGNIDSAYG----A-AGKSYIKWAAGMAL---SLDTGVPWVM 217 (848)
Q Consensus 170 ~~gGpII~~QiENE-yg~~~~~~~----~-~~~~y~~~l~~~~~---~~g~~vp~~~ 217 (848)
++...|.+|+|-|| .+.....+. . ....|.+||+++++ +.+-..|+..
T Consensus 6 ~~~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP~~pvt~ 62 (88)
T PF12876_consen 6 GYDPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDPSQPVTS 62 (88)
T ss_dssp T-GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-TTS-EE-
T ss_pred cCCCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCCCCcEEe
Confidence 34568999999999 662211111 1 24567777776654 4566677543
No 151
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=42.49 E-value=39 Score=42.15 Aligned_cols=69 Identities=20% Similarity=0.274 Sum_probs=48.7
Q ss_pred eeCCCC---CcccHHHHHHHHHhCCCC--EEEEccccCccCCcCceeeecC----cchHHHHHHHHHHcCcEEEEecCcc
Q 003095 48 IHYPRS---TPEMWPDLIQKSKDGGLD--VIETYVFWNLHEPVRNQYNFEG----RYDLVKFVKLVAEAGLYAHLRIGPY 118 (848)
Q Consensus 48 ~Hy~R~---~~~~W~d~l~k~ka~GlN--tV~~yv~Wn~hEp~~G~ydF~g----~~dl~~fl~la~~~GL~VilrpGPY 118 (848)
+|+.|+ .-+.-+|+.+.+++|||. ++-+-+.|. .+.=||+= -.++..|++-.++.|+++|+.+=|+
T Consensus 300 f~~~RwgY~nls~~~dvv~~~~~agiPld~~~~DiDyM-----d~ykDFTvd~~~fp~~~~fv~~Lh~~G~kyvliidP~ 374 (805)
T KOG1065|consen 300 FQLCRWGYKNLSVVRDVVENYRAAGIPLDVIVIDIDYM-----DGYKDFTVDKVWFPDLKDFVDDLHARGFKYVLIIDPF 374 (805)
T ss_pred ceecccccccHHHHHHHHHHHHHcCCCcceeeeehhhh-----hcccceeeccccCcchHHHHHHHHhCCCeEEEEeCCc
Confidence 444554 334458899999999998 666666664 22223431 1368999999999999999988888
Q ss_pred ccc
Q 003095 119 VCA 121 (848)
Q Consensus 119 ica 121 (848)
|..
T Consensus 375 is~ 377 (805)
T KOG1065|consen 375 IST 377 (805)
T ss_pred ccc
Confidence 753
No 152
>PF08531 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal domain; InterPro: IPR013737 This domain is found in bacterial rhamnosidase A and B enzymes and is probably involved in substrate recognition. ; PDB: 2OKX_B.
Probab=42.41 E-value=25 Score=35.68 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=19.2
Q ss_pred EEeeCCCceEEEEECCeeeeecc
Q 003095 642 AIDFTGMGKGEAWVNGQSIGRYW 664 (848)
Q Consensus 642 ~Ld~~g~gKG~vwVNG~nlGRYW 664 (848)
.|..++.|+=.+||||+.+|+--
T Consensus 7 ~l~isa~g~Y~l~vNG~~V~~~~ 29 (172)
T PF08531_consen 7 RLYISALGRYELYVNGERVGDGP 29 (172)
T ss_dssp EEEEEEESEEEEEETTEEEEEE-
T ss_pred EEEEEeCeeEEEEECCEEeeCCc
Confidence 57778888999999999999753
No 153
>PF02228 Gag_p19: Major core protein p19; InterPro: IPR003139 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from delta-retroviruses such as Human T-lymphotropic virus 1 and Human T-cell leukemia virus 2 (HTLV-2), both members of the human oncovirus subclass of retroviruses [, ].; GO: 0005198 structural molecule activity, 0019013 viral nucleocapsid; PDB: 1JVR_A.
Probab=42.24 E-value=11 Score=33.36 Aligned_cols=39 Identities=21% Similarity=0.515 Sum_probs=27.8
Q ss_pred CcccHHHHHHHHHhCCCCEEEEccccCccCCcCceeeecCcchHHHHHHHHHHcCc
Q 003095 54 TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGL 109 (848)
Q Consensus 54 ~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL 109 (848)
....|-.-|+.+-. .||.|..|||. +|.+||++|.|.-+
T Consensus 20 s~hhWLNflQaAyR--------------L~PgPS~~DF~---qLr~flk~alkTpv 58 (92)
T PF02228_consen 20 STHHWLNFLQAAYR--------------LQPGPSSFDFH---QLRNFLKLALKTPV 58 (92)
T ss_dssp THHHHHHHHHHHHH--------------SS---STTTHH---HHHHHHHHHHT-TT
T ss_pred CHHHHHHHHHHHHh--------------cCCCCCcccHH---HHHHHHHHHHcCCe
Confidence 44568777776654 48999999999 99999999988544
No 154
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=42.13 E-value=1.3e+02 Score=37.37 Aligned_cols=110 Identities=15% Similarity=0.098 Sum_probs=67.8
Q ss_pred ccHHHHHHHHHhCCCCEEE---------------EccccCccCCcCceee-ecCcchHHHHHHHHHHcCcEEEEecCccc
Q 003095 56 EMWPDLIQKSKDGGLDVIE---------------TYVFWNLHEPVRNQYN-FEGRYDLVKFVKLVAEAGLYAHLRIGPYV 119 (848)
Q Consensus 56 ~~W~d~l~k~ka~GlNtV~---------------~yv~Wn~hEp~~G~yd-F~g~~dl~~fl~la~~~GL~VilrpGPYi 119 (848)
+.-...|+.+|++|+|||= .|++| -|= ||+-| |+ -| ...++.+.|+.|-.+..||-
T Consensus 334 ~~L~~lLdrlk~~G~ntV~lqafadp~gd~~~~s~yfP~-~~l--p~r~d~f~---~~--aw~l~~r~~v~v~AWmp~~~ 405 (671)
T PRK14582 334 RNIDVLIQRVKDMQISTVYLQAFADPDGDGLVKELYFPN-RLL--PMRADLFN---RV--AWQLRTRAGVNVYAWMPVLS 405 (671)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeccCCCCCccccccccCc-ccc--ccccCCcC---HH--HHHHHHhhCCEEEEecccee
Confidence 4567799999999999996 46667 333 34443 22 12 35568999999999999985
Q ss_pred cc---------ccCCCCCCcccCcCCCeeeecCChhhHHHHHHHHHHHHHHHhhcccccccCCceEeecccccc
Q 003095 120 CA---------EWNFGGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEY 184 (848)
Q Consensus 120 ca---------Ew~~GG~P~WL~~~p~~~~Rt~d~~y~~~v~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEy 184 (848)
.. +++..+-|.... |+--.| -.+|..+|++|+..|.+-|+++ .+|=++|...+-
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~r--l~P~~pe~r~~i~~i~~dla~~-------~~~dGilf~Dd~ 468 (671)
T PRK14582 406 FDLDPTLPRVKRLDTGEGKAQIH--PEQYRR--LSPFDDRVRAQVGMLYEDLAGH-------AAFDGILFHDDA 468 (671)
T ss_pred eccCCCcchhhhccccCCccccC--CCCCcC--CCCCCHHHHHHHHHHHHHHHHh-------CCCceEEecccc
Confidence 31 122122221111 110012 2347788999999999988853 256666655544
No 155
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=40.97 E-value=44 Score=37.62 Aligned_cols=75 Identities=17% Similarity=0.152 Sum_probs=53.1
Q ss_pred cceEEECCEEeEEEEEEeeCCCCCcccHHHHHHHHHhCCCCEEEEccc----cCccCC------cCceee--------ec
Q 003095 31 HRAVVIGGKRRVLISGSIHYPRSTPEMWPDLIQKSKDGGLDVIETYVF----WNLHEP------VRNQYN--------FE 92 (848)
Q Consensus 31 ~~~f~~dG~p~~~~sG~~Hy~R~~~~~W~d~l~k~ka~GlNtV~~yv~----Wn~hEp------~~G~yd--------F~ 92 (848)
-++|+||=-| ||+ +.+..++.|+.|-..++|+...++- |.+.-+ ..|.+. |=
T Consensus 3 ~RG~mlD~aR--------~f~--~~~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~Y 72 (329)
T cd06568 3 YRGLMLDVAR--------HFF--TVAEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYY 72 (329)
T ss_pred ccceeeeccC--------CCc--CHHHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcC
Confidence 3556666444 443 7889999999999999999998874 654322 123221 11
Q ss_pred CcchHHHHHHHHHHcCcEEEEec
Q 003095 93 GRYDLVKFVKLVAEAGLYAHLRI 115 (848)
Q Consensus 93 g~~dl~~fl~la~~~GL~Vilrp 115 (848)
-..|+.++++.|++.|+.||.-+
T Consensus 73 T~~di~elv~yA~~rgI~vIPEi 95 (329)
T cd06568 73 TQEDYKDIVAYAAERHITVVPEI 95 (329)
T ss_pred CHHHHHHHHHHHHHcCCEEEEec
Confidence 13499999999999999999754
No 156
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=40.69 E-value=92 Score=34.02 Aligned_cols=108 Identities=19% Similarity=0.235 Sum_probs=67.9
Q ss_pred eEEEEEEeeCCCCCccc-H---HHHHHHHHhCCCCEEEEccccCccCCcCceeeecCcchHHHHHHHHHHcCcEE--EEe
Q 003095 41 RVLISGSIHYPRSTPEM-W---PDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYA--HLR 114 (848)
Q Consensus 41 ~~~~sG~~Hy~R~~~~~-W---~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~V--ilr 114 (848)
.+.+++..|+.+-|... - .++|++-.++|.+.+-|-.+ ||.+ .+.+|++.|++.|+.+ ++.
T Consensus 125 ~f~ig~a~~Peghp~~~~~~~~~~~L~~K~~aGA~f~iTQ~~----------fd~~---~~~~~~~~~~~~gi~~PIi~G 191 (272)
T TIGR00676 125 DFDIGVAAYPEKHPEAPNLEEDIENLKRKVDAGADYAITQLF----------FDND---DYYRFVDRCRAAGIDVPIIPG 191 (272)
T ss_pred CeeEEEEeCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeeccc----------cCHH---HHHHHHHHHHHcCCCCCEecc
Confidence 46788999887643322 1 24566667889999888443 5555 7899999999997664 444
Q ss_pred cCcccc-------cccCCCCCCcccCcCCCeeeecCC-hhhHHHHHHHHHHHHHHHh
Q 003095 115 IGPYVC-------AEWNFGGFPLWLHFIPGIQFRTDN-EPFKAEMQRFTAKIVDMMK 163 (848)
Q Consensus 115 pGPYic-------aEw~~GG~P~WL~~~p~~~~Rt~d-~~y~~~v~~~~~~l~~~l~ 163 (848)
.-|-.. .+|..-.+|.|+.+.=. +.. ++ ...+++--++..+++..+.
T Consensus 192 i~p~~s~k~~~~~~~~~Gv~vP~~~~~~l~-~~~-~~~~~~~~~gi~~~~~~~~~l~ 246 (272)
T TIGR00676 192 IMPITNFKQLLRFAERCGAEIPAWLVKRLE-KYD-DDPEEVRAVGIEYATDQCEDLI 246 (272)
T ss_pred cCCcCCHHHHHHHHhccCCCCCHHHHHHHH-hcC-CCHHHHHHHHHHHHHHHHHHHH
Confidence 444222 23666678888875100 011 33 3455666667777777765
No 157
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=39.81 E-value=1e+02 Score=34.90 Aligned_cols=74 Identities=18% Similarity=0.274 Sum_probs=52.3
Q ss_pred ceEEECCEEeEEEEEEeeCCCCCcccHHHHHHHHHhCCCCEEEEccc----cCccCC------cCceeeec---CcchHH
Q 003095 32 RAVVIGGKRRVLISGSIHYPRSTPEMWPDLIQKSKDGGLDVIETYVF----WNLHEP------VRNQYNFE---GRYDLV 98 (848)
Q Consensus 32 ~~f~~dG~p~~~~sG~~Hy~R~~~~~W~d~l~k~ka~GlNtV~~yv~----Wn~hEp------~~G~ydF~---g~~dl~ 98 (848)
++|+||=-| || .+.+..++.|+.|-..++|+...++- |.+--+ +.|.|.=. -..|+.
T Consensus 4 RG~mlDvaR--------~f--~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~Lt~~ga~~~~~~YT~~di~ 73 (348)
T cd06562 4 RGLLLDTSR--------HF--LSVDSIKRTIDAMAYNKLNVLHWHITDSQSFPLESPSYPELSKKGAYSPSEVYTPEDVK 73 (348)
T ss_pred cceeeeccc--------cC--CCHHHHHHHHHHHHHhCCcEEEEeEEcCCCceEeeCCCchhhhccCcCCCceECHHHHH
Confidence 456666444 54 36789999999999999999998764 555332 12332211 124999
Q ss_pred HHHHHHHHcCcEEEEec
Q 003095 99 KFVKLVAEAGLYAHLRI 115 (848)
Q Consensus 99 ~fl~la~~~GL~Vilrp 115 (848)
++++.|++.|+.||.-+
T Consensus 74 eiv~yA~~rgI~vIPEI 90 (348)
T cd06562 74 EIVEYARLRGIRVIPEI 90 (348)
T ss_pred HHHHHHHHcCCEEEEec
Confidence 99999999999999753
No 158
>KOG3833 consensus Uncharacterized conserved protein, contains RtcB domain [Function unknown]
Probab=39.40 E-value=29 Score=38.59 Aligned_cols=53 Identities=23% Similarity=0.290 Sum_probs=46.8
Q ss_pred cHHHHHHHHHhCCCCEEEEccccCccCCcCceeeecCcchHHHHHHHHHHcCcE--EE-Eec
Q 003095 57 MWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLY--AH-LRI 115 (848)
Q Consensus 57 ~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~--Vi-lrp 115 (848)
.|++.+.+++..|| .|+..-+--..|..|+.|. |+.+.+++|...||- +| |||
T Consensus 444 ~~~sV~D~L~~~~I-~iR~aSpklvmEEAPesYK-----dVtdVVdtc~~aGiskK~~klrP 499 (505)
T KOG3833|consen 444 THESVLDKLRSRGI-AIRVASPKLVMEEAPESYK-----DVTDVVDTCDAAGISKKAIKLRP 499 (505)
T ss_pred cHHHHHHHHHhCCe-EEEeCCccchhhhCchhhh-----hHHHHhhhhhhcccchhhhcccc
Confidence 49999999999998 6788888899999999996 899999999999986 44 676
No 159
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=38.99 E-value=93 Score=34.82 Aligned_cols=60 Identities=12% Similarity=0.167 Sum_probs=46.5
Q ss_pred CCcccHHHHHHHHHhCCCCEEEEcc----ccCccC---Cc---Cc----eeeecCcchHHHHHHHHHHcCcEEEEec
Q 003095 53 STPEMWPDLIQKSKDGGLDVIETYV----FWNLHE---PV---RN----QYNFEGRYDLVKFVKLVAEAGLYAHLRI 115 (848)
Q Consensus 53 ~~~~~W~d~l~k~ka~GlNtV~~yv----~Wn~hE---p~---~G----~ydF~g~~dl~~fl~la~~~GL~Vilrp 115 (848)
++.+..++.|+.|...++|+...++ -|.+-- |+ .| .|. ..|+.++++.|++.|+.||.-+
T Consensus 15 ~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~~~~~yT---~~di~elv~yA~~rgI~vIPEI 88 (311)
T cd06570 15 IPVAVIKRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKASDGLYYT---QEQIREVVAYARDRGIRVVPEI 88 (311)
T ss_pred cCHHHHHHHHHHHHHhCCeEEEEEEecCCCceeecCCCccccccCCCCCccC---HHHHHHHHHHHHHcCCEEEEee
Confidence 5688999999999999999999987 475421 11 22 232 3499999999999999999753
No 160
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=38.93 E-value=37 Score=39.59 Aligned_cols=55 Identities=22% Similarity=0.261 Sum_probs=39.5
Q ss_pred HHHHHHHhCCCCEEEE-ccc---cCccCCcCcee-----eecCcchHHHHHHHHHHcCcEEEEe
Q 003095 60 DLIQKSKDGGLDVIET-YVF---WNLHEPVRNQY-----NFEGRYDLVKFVKLVAEAGLYAHLR 114 (848)
Q Consensus 60 d~l~k~ka~GlNtV~~-yv~---Wn~hEp~~G~y-----dF~g~~dl~~fl~la~~~GL~Vilr 114 (848)
+.|.-+|.+|+++|-+ .++ -..|--..-.| .|.+..|+.++++.|++.||+||+-
T Consensus 33 ~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~~~Gt~~d~~~li~~~H~~gi~vi~D 96 (505)
T COG0366 33 EKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPHFGTEEDFKELVEEAHKRGIKVILD 96 (505)
T ss_pred HhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCcccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 7888899999999953 233 12222111000 6777889999999999999999975
No 161
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=38.48 E-value=45 Score=36.34 Aligned_cols=52 Identities=21% Similarity=0.292 Sum_probs=35.9
Q ss_pred HHHHHHHHhCCCCEEEEccccC--ccCCcCceeeecCcchHHHHHHHHHHcCcEEEE
Q 003095 59 PDLIQKSKDGGLDVIETYVFWN--LHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHL 113 (848)
Q Consensus 59 ~d~l~k~ka~GlNtV~~yv~Wn--~hEp~~G~ydF~g~~dl~~fl~la~~~GL~Vil 113 (848)
++.+++||++|++.|...+--+ .++...+..+|+ +..+.++.++++|+.|..
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i~~~~s~~---~~~~ai~~l~~~Gi~v~~ 176 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNLDTSQEFYSNIISTHTYD---DRVDTLENAKKAGLKVCS 176 (296)
T ss_pred HHHHHHHHHcCCCEEEEcccCCHHHHhhccCCCCHH---HHHHHHHHHHHcCCEEEE
Confidence 6789999999999998876511 112222223444 667789999999998653
No 162
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=37.72 E-value=75 Score=36.01 Aligned_cols=76 Identities=25% Similarity=0.395 Sum_probs=57.1
Q ss_pred eEEECCEEeEEEEEEeeCCCC-CcccHHHHHHHHHhCCCCEEEEccccCccCCcCceeeecC--cchHHHHHHHHHHcCc
Q 003095 33 AVVIGGKRRVLISGSIHYPRS-TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEG--RYDLVKFVKLVAEAGL 109 (848)
Q Consensus 33 ~f~~dG~p~~~~sG~~Hy~R~-~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~ydF~g--~~dl~~fl~la~~~GL 109 (848)
.+.+.|.+++++.| +=-+ +++.-.+.-+.+|++|.+.++.|+|= |+---|.|.| ..-|..+.+.+++.||
T Consensus 86 ~~~ig~~~~~~IAG---PCsiEs~e~~~~~A~~lk~~ga~~~r~~~fK----pRTsp~sf~G~g~~gL~~L~~~~~~~Gl 158 (335)
T PRK08673 86 DVEIGGGKPVVIAG---PCSVESEEQILEIARAVKEAGAQILRGGAFK----PRTSPYSFQGLGEEGLKLLAEAREETGL 158 (335)
T ss_pred CEEECCCceEEEEe---cCccCCHHHHHHHHHHHHHhchhhccCcEec----CCCCCcccccccHHHHHHHHHHHHHcCC
Confidence 36777788888988 2223 56667777888899999999999995 4444467765 5667777778899999
Q ss_pred EEEEec
Q 003095 110 YAHLRI 115 (848)
Q Consensus 110 ~Vilrp 115 (848)
.++-.+
T Consensus 159 ~v~tev 164 (335)
T PRK08673 159 PIVTEV 164 (335)
T ss_pred cEEEee
Confidence 888764
No 163
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=37.52 E-value=60 Score=36.69 Aligned_cols=73 Identities=12% Similarity=0.146 Sum_probs=50.2
Q ss_pred eeCCCC---CcccHHHHHHHHHhCCCCEEEEcc----------ccCccCCc---------CceeeecC---cchHHHHHH
Q 003095 48 IHYPRS---TPEMWPDLIQKSKDGGLDVIETYV----------FWNLHEPV---------RNQYNFEG---RYDLVKFVK 102 (848)
Q Consensus 48 ~Hy~R~---~~~~W~d~l~k~ka~GlNtV~~yv----------~Wn~hEp~---------~G~ydF~g---~~dl~~fl~ 102 (848)
+|..|. ..+.-++.++++++.||..=.+++ .|+-..-. -+.++|.. --|..+||+
T Consensus 13 ~~~sr~~Y~~~~ev~~v~~~~~~~~iP~d~i~lD~W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~FPdp~~mi~ 92 (340)
T cd06597 13 LWMSANEWDTQAEVMRQMDAHEEHGIPVTVVVIEQWSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRWPNPKGMID 92 (340)
T ss_pred hhhhccCCCCHHHHHHHHHHHHHcCCCeeEEEEecccCcceeeeeccchhcccccCCcceecccccCccccCCCHHHHHH
Confidence 566664 456678899999999998666544 24422211 13334431 128999999
Q ss_pred HHHHcCcEEEEecCcccc
Q 003095 103 LVAEAGLYAHLRIGPYVC 120 (848)
Q Consensus 103 la~~~GL~VilrpGPYic 120 (848)
..++.|++|+|..=|+|.
T Consensus 93 ~Lh~~G~kv~l~v~P~i~ 110 (340)
T cd06597 93 ELHEQGVKVLLWQIPIIK 110 (340)
T ss_pred HHHHCCCEEEEEecCccc
Confidence 999999999998877774
No 164
>PLN03059 beta-galactosidase; Provisional
Probab=36.67 E-value=1.3e+02 Score=38.09 Aligned_cols=43 Identities=19% Similarity=0.364 Sum_probs=31.9
Q ss_pred CCCceEEEEEEECCCCCC------CeEEeeCCCc-eEEEEECCeeeeecc
Q 003095 622 LQPLVWYKTTFDAPAGSE------PVAIDFTGMG-KGEAWVNGQSIGRYW 664 (848)
Q Consensus 622 ~~~~~~Yk~~F~~p~~~d------~~~Ld~~g~g-KG~vwVNG~nlGRYW 664 (848)
..+..||+++|+++.... ...|.+.+.+ .-+|||||+-+|.-+
T Consensus 468 ~~dYlwY~t~i~~~~~~~~~~~~~~~~L~v~~~~d~~~vFVNg~~~Gt~~ 517 (840)
T PLN03059 468 ATDYLWYMTEVHIDPDEGFLKTGQYPVLTIFSAGHALHVFINGQLAGTVY 517 (840)
T ss_pred CCceEEEEEEEeecCCccccccCCCceEEEcccCcEEEEEECCEEEEEEE
Confidence 346899999999865321 1237777664 589999999999876
No 165
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=36.44 E-value=96 Score=34.36 Aligned_cols=60 Identities=13% Similarity=0.195 Sum_probs=47.3
Q ss_pred CCcccHHHHHHHHHhCCCCEEEEccc----cCccCC----------------cCceeeecCcchHHHHHHHHHHcCcEEE
Q 003095 53 STPEMWPDLIQKSKDGGLDVIETYVF----WNLHEP----------------VRNQYNFEGRYDLVKFVKLVAEAGLYAH 112 (848)
Q Consensus 53 ~~~~~W~d~l~k~ka~GlNtV~~yv~----Wn~hEp----------------~~G~ydF~g~~dl~~fl~la~~~GL~Vi 112 (848)
.+.+..++.|+.|-..++|++..++- |.+--+ ..|.|.-+ |+.++++.|++.|+.||
T Consensus 13 ~~~~~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~---di~elv~yA~~rgI~vi 89 (303)
T cd02742 13 LSVESIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTYA---QLKDIIEYAAARGIEVI 89 (303)
T ss_pred cCHHHHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECHH---HHHHHHHHHHHcCCEEE
Confidence 36788999999999999999999887 755321 12344434 99999999999999999
Q ss_pred Eec
Q 003095 113 LRI 115 (848)
Q Consensus 113 lrp 115 (848)
.-+
T Consensus 90 PEi 92 (303)
T cd02742 90 PEI 92 (303)
T ss_pred Eec
Confidence 754
No 166
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=36.12 E-value=72 Score=32.84 Aligned_cols=87 Identities=20% Similarity=0.266 Sum_probs=54.5
Q ss_pred EEeeCCCCC-----cccHHHHHHHHHhCCCCEEEEccccCccCCcCceeee--cC-cchHHHHHHHHHHcCcEEEEecCc
Q 003095 46 GSIHYPRST-----PEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNF--EG-RYDLVKFVKLVAEAGLYAHLRIGP 117 (848)
Q Consensus 46 G~~Hy~R~~-----~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~ydF--~g-~~dl~~fl~la~~~GL~VilrpGP 117 (848)
|.+||+|.. .++.+.-|+.++..++..= ..|--.|..++.+.- +- ...+.+|+++.+++|.++++-.++
T Consensus 56 G~Yhf~~~~~~~~~~~Qa~~f~~~~~~~~~~~~---~i~lDiE~~~~~~~~~~~~~~~~~~~f~~~~~~~G~~~~iYt~~ 132 (196)
T cd06416 56 DVYFFPCINCCGSAAGQVQTFLQYLKANGIKYG---TVWIDIEQNPCQWSSDVASNCQFLQELVSAAKALGLKVGIYSSQ 132 (196)
T ss_pred ceEEEecCCCCCCHHHHHHHHHHHHHhCCCcee---EEEEEEecCCCCCcCCHHHHHHHHHHHHHHHHHhCCeEEEEcCc
Confidence 999998753 5667778888887654321 113333333343321 11 136889999999999999998887
Q ss_pred ccccc----c---CCCCCCcccCcC
Q 003095 118 YVCAE----W---NFGGFPLWLHFI 135 (848)
Q Consensus 118 YicaE----w---~~GG~P~WL~~~ 135 (848)
+--.. . ++...|.|+-..
T Consensus 133 ~~w~~~~~~~~~~~~~~ypLWiA~Y 157 (196)
T cd06416 133 YDWSQIFGSSYTCNFSSLPLWYAHY 157 (196)
T ss_pred chhccccCCCcCCCcCCCceEecCC
Confidence 52211 1 145678898764
No 167
>cd06418 GH25_BacA-like BacA is a bacterial lysin from Enterococcus faecalis that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. BacA is homologous to the YbfG and YkuG lysins of Bacillus subtilis. BacA has a C-terminal catalytic glycosyl hydrolase family 25 (GH25) domain and an N-terminal peptidoglycan-binding domain comprised of three alpha helices which is similar to a domain found in matrixins.
Probab=35.99 E-value=1.2e+02 Score=31.99 Aligned_cols=90 Identities=12% Similarity=0.140 Sum_probs=63.3
Q ss_pred CCcccHHHHHHHHHhCCCCEEEEccccCccCCcCceeeec-CcchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCcc
Q 003095 53 STPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFE-GRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLW 131 (848)
Q Consensus 53 ~~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~ydF~-g~~dl~~fl~la~~~GL~VilrpGPYicaEw~~GG~P~W 131 (848)
..+..+++.++.++++|+..+.+|..... ....+..+ |..|=..-+++|+++|+. +|- |-+
T Consensus 49 ~~k~lt~~e~~~i~~~Gl~~~pIyq~~~~---~~~~~~~~~G~~dA~~A~~~A~~lG~p----~gs-----------~IY 110 (212)
T cd06418 49 LSKNLTATELETITAAGLKVFPIYQGGGY---SLDYFGYEQGVKDARDAVAAARALGFP----PGT-----------IIY 110 (212)
T ss_pred CCCCCCHHHHHHHHHCCCEEEEEEECCCc---cccccCHHHHHHHHHHHHHHHHHcCCC----CCC-----------EEE
Confidence 36889999999999999999999988765 22233333 678999999999999983 232 222
Q ss_pred cCcCCCeeeecCChhhHHHHHHHHHHHHHHHhh
Q 003095 132 LHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQ 164 (848)
Q Consensus 132 L~~~p~~~~Rt~d~~y~~~v~~~~~~l~~~l~~ 164 (848)
+.-+.+. .+..+...+..||+.+...|+.
T Consensus 111 favD~d~----~~~~~~~~v~~Y~~a~~~~l~~ 139 (212)
T cd06418 111 FAVDFDA----LDDEVTEVILPYFRGWNDALHE 139 (212)
T ss_pred EEeecCC----CcchhHHHHHHHHHHHHHHHHh
Confidence 2212221 2333778888899888888874
No 168
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=35.89 E-value=63 Score=35.05 Aligned_cols=49 Identities=27% Similarity=0.217 Sum_probs=36.1
Q ss_pred HHHHHhCCCCEEEEccccCccCCcCceeeecCcchHHHHHHHHHHcCcEEEEecC
Q 003095 62 IQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIG 116 (848)
Q Consensus 62 l~k~ka~GlNtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~VilrpG 116 (848)
..++|++|++.|-+ -|..++-.|.-+ +..+.+=++.|.++||.+|+..|
T Consensus 79 ~~mLkd~G~~~vii-----GHSERR~~f~Et-d~~v~~K~~~a~~~gl~pIvCiG 127 (250)
T PRK00042 79 AEMLKDLGVKYVII-----GHSERRQYFGET-DELVNKKVKAALKAGLTPILCVG 127 (250)
T ss_pred HHHHHHCCCCEEEe-----CcccccCccCcC-HHHHHHHHHHHHHCCCEEEEEcC
Confidence 35799999999988 676676666533 23344444459999999999987
No 169
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=35.43 E-value=56 Score=41.75 Aligned_cols=21 Identities=14% Similarity=0.371 Sum_probs=18.6
Q ss_pred chHHHHHHHHHHcCcEEEEec
Q 003095 95 YDLVKFVKLVAEAGLYAHLRI 115 (848)
Q Consensus 95 ~dl~~fl~la~~~GL~Vilrp 115 (848)
.++.++++.|+++||.|||-.
T Consensus 404 ~Efk~mV~alH~~Gi~VIlDV 424 (898)
T TIGR02103 404 KEFREMVQALNKTGLNVVMDV 424 (898)
T ss_pred HHHHHHHHHHHHCCCEEEEEe
Confidence 479999999999999999864
No 170
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=34.78 E-value=2.6e+02 Score=31.81 Aligned_cols=78 Identities=14% Similarity=0.288 Sum_probs=46.4
Q ss_pred EEeEEEEEEeeCCCCCcccHHHHHHHHHhCCCCEEEEccccCccCCcCceeeecCcchHHHHHHHHHHcCcEEEEecCcc
Q 003095 39 KRRVLISGSIHYPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPY 118 (848)
Q Consensus 39 ~p~~~~sG~~Hy~R~~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~VilrpGPY 118 (848)
|.++.++. -...++.-.|.. +.||..+ |.+| .+++..|+++|++|++-
T Consensus 36 ~~~~~~~~--~~~~~~~~~~~~---------~tti~~~----------~~~~-------~~~~~~A~~~~v~v~~~---- 83 (358)
T cd02875 36 FEFLVFSV--NSTNYPNYDWSK---------VTTIAIF----------GDID-------DELLCYAHSKGVRLVLK---- 83 (358)
T ss_pred eEEEEEEe--CCCcCccccccc---------ceEEEec----------CCCC-------HHHHHHHHHcCCEEEEE----
Confidence 44454442 235555555653 6777775 3332 68899999999999863
Q ss_pred cccccCCCCCCcccCcCCCeeeecCChhhHHHHHHHHHHHHHHHhhccc
Q 003095 119 VCAEWNFGGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKL 167 (848)
Q Consensus 119 icaEw~~GG~P~WL~~~p~~~~Rt~d~~y~~~v~~~~~~l~~~l~~~~~ 167 (848)
|+.|. +. + .||.. -++|++.++..++++.+
T Consensus 84 -------~~~~~-----~~--l--~~~~~---R~~fi~siv~~~~~~gf 113 (358)
T cd02875 84 -------GDVPL-----EQ--I--SNPTY---RTQWIQQKVELAKSQFM 113 (358)
T ss_pred -------CccCH-----HH--c--CCHHH---HHHHHHHHHHHHHHhCC
Confidence 23331 11 1 24433 35677888888886544
No 171
>KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism]
Probab=34.49 E-value=1.5e+02 Score=33.36 Aligned_cols=48 Identities=19% Similarity=0.384 Sum_probs=39.6
Q ss_pred CcccHHHHHHHHHhCCCCEEEEccccCccCCcCceeeecCcchHHHHHHHHHHcCcE
Q 003095 54 TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLY 110 (848)
Q Consensus 54 ~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~ 110 (848)
....|+.--.-.+++||.+|.+|-+|+.-+.. .|++.||.-.+.+--.
T Consensus 131 SnPTW~nH~~if~~aGf~tv~~Y~yWd~~~k~---------~d~e~~Lsdl~~APe~ 178 (410)
T KOG1412|consen 131 SNPTWENHHAIFEKAGFTTVATYPYWDAENKC---------VDLEGFLSDLESAPEG 178 (410)
T ss_pred cCCchhHHHHHHHHcCCceeeeeeeecCCCce---------ecHHHHHHHHhhCCCC
Confidence 56689999999999999999999999976543 4788888888776555
No 172
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=34.36 E-value=1.5e+02 Score=34.60 Aligned_cols=98 Identities=17% Similarity=0.263 Sum_probs=57.7
Q ss_pred EeeCCCC--CcccHHHHHHHHHhCCCCEEEEc-cc-----------cCccCCcC------ceeeecCcchHHHHHHHHH-
Q 003095 47 SIHYPRS--TPEMWPDLIQKSKDGGLDVIETY-VF-----------WNLHEPVR------NQYNFEGRYDLVKFVKLVA- 105 (848)
Q Consensus 47 ~~Hy~R~--~~~~W~d~l~k~ka~GlNtV~~y-v~-----------Wn~hEp~~------G~ydF~g~~dl~~fl~la~- 105 (848)
+-+.+++ +-+.|+++|+.++++|.|+|..- +- =++.+-.| ....| .++.+|+..++
T Consensus 11 QTvlsk~~G~~~~W~~~l~~~~~~GYNmIHftPlq~~G~S~S~YSI~Dql~~~~~~~~~~~~~~~---~~v~~~v~~~~~ 87 (423)
T PF14701_consen 11 QTVLSKWMGPFSDWEKHLKVISEKGYNMIHFTPLQERGESNSPYSIYDQLKFDPDFFPPGKESTF---EDVKEFVKEAEK 87 (423)
T ss_pred EEEhhhhcCCHhHHHHHHHHHHHcCCcEEEecccccCCCCCCCccccchhhcChhhcCCCccccH---HHHHHHHHHHHH
Confidence 3344554 56799999999999999999741 11 11111111 11222 39999999985
Q ss_pred HcCcEEEEecCcccccccCCCCC-CcccCcCCCeeeecCChhhHHHHHH
Q 003095 106 EAGLYAHLRIGPYVCAEWNFGGF-PLWLHFIPGIQFRTDNEPFKAEMQR 153 (848)
Q Consensus 106 ~~GL~VilrpGPYicaEw~~GG~-P~WL~~~p~~~~Rt~d~~y~~~v~~ 153 (848)
+.||.++.-. + |+--.. =.||..+|+.-.--.+.++|+.+-.
T Consensus 88 ~~~ll~~~Dv---V---~NHtA~nS~Wl~eHPEagYN~~nsPHL~pA~e 130 (423)
T PF14701_consen 88 KYGLLSMTDV---V---LNHTANNSPWLREHPEAGYNLENSPHLRPAYE 130 (423)
T ss_pred HcCceEEEEE---e---eccCcCCChHHHhCcccccCCCCCcchhhHHH
Confidence 7899976543 1 222221 3699998875333334455554433
No 173
>PLN02877 alpha-amylase/limit dextrinase
Probab=33.89 E-value=67 Score=41.31 Aligned_cols=21 Identities=24% Similarity=0.403 Sum_probs=18.8
Q ss_pred chHHHHHHHHHHcCcEEEEec
Q 003095 95 YDLVKFVKLVAEAGLYAHLRI 115 (848)
Q Consensus 95 ~dl~~fl~la~~~GL~Vilrp 115 (848)
+++.++++.|+++||.|||-.
T Consensus 466 ~efk~mV~~lH~~GI~VImDV 486 (970)
T PLN02877 466 IEFRKMVQALNRIGLRVVLDV 486 (970)
T ss_pred HHHHHHHHHHHHCCCEEEEEE
Confidence 369999999999999999874
No 174
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=33.72 E-value=53 Score=36.64 Aligned_cols=59 Identities=19% Similarity=0.222 Sum_probs=42.3
Q ss_pred CcccHHHHHHHHHhCCCCEEEEccc----cCccCC------cCc---------eeeecCcchHHHHHHHHHHcCcEEEEe
Q 003095 54 TPEMWPDLIQKSKDGGLDVIETYVF----WNLHEP------VRN---------QYNFEGRYDLVKFVKLVAEAGLYAHLR 114 (848)
Q Consensus 54 ~~~~W~d~l~k~ka~GlNtV~~yv~----Wn~hEp------~~G---------~ydF~g~~dl~~fl~la~~~GL~Vilr 114 (848)
+.+.-++.|+.|-..++|++..++- |.+.-+ +.| .|.- .|+.++++.|++.|+.||.-
T Consensus 16 ~~~~ik~~id~ma~~k~N~lhlhl~D~~~~~~~~~~~p~l~~~ga~~~~~~~~~yT~---~di~~lv~yA~~~gI~VIPe 92 (351)
T PF00728_consen 16 SVDTIKRLIDQMAYYKLNVLHLHLSDDQGFRLESKSYPELTEKGAYRPSDAGGYYTK---EDIRELVAYAKERGIEVIPE 92 (351)
T ss_dssp -HHHHHHHHHHHHHTT-SEEEEEEESSTCB-BEBSTSTHHHHTTTESTTCTESEBEH---HHHHHHHHHHHHTT-EEEEE
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEEecCCCCccccCCCccccccCccccccccccCCH---HHHHHHHHHHHHcCCceeee
Confidence 6778899999999999999998875 443321 122 3333 49999999999999999975
Q ss_pred c
Q 003095 115 I 115 (848)
Q Consensus 115 p 115 (848)
+
T Consensus 93 i 93 (351)
T PF00728_consen 93 I 93 (351)
T ss_dssp E
T ss_pred c
Confidence 4
No 175
>PRK13791 lysozyme inhibitor; Provisional
Probab=33.39 E-value=82 Score=30.14 Aligned_cols=19 Identities=16% Similarity=0.095 Sum_probs=12.8
Q ss_pred CCcchhHHHHHHHHHHHHH
Q 003095 1 MASKEILLLVLCWGFVVLA 19 (848)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~ 19 (848)
|++|.++++.++++|+.++
T Consensus 2 ~~mk~~~~~~~~~~ls~~~ 20 (113)
T PRK13791 2 MKRKLIPFTLFLAALSAST 20 (113)
T ss_pred chHHHHHHHHHHHHHhhhh
Confidence 5677777777777766644
No 176
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=33.09 E-value=78 Score=34.20 Aligned_cols=49 Identities=31% Similarity=0.321 Sum_probs=39.6
Q ss_pred HHHHHhCCCCEEEEccccCccCCcCceeeecCcchHHHHHHHHHHcCcEEEEecC
Q 003095 62 IQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIG 116 (848)
Q Consensus 62 l~k~ka~GlNtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~VilrpG 116 (848)
..++|++|++.|-+ -|..++--|.-+ +.++.+=++.|.++||.+|+..|
T Consensus 77 ~~mL~d~G~~~vii-----GHSERR~~f~Et-~~~i~~Kv~~a~~~gl~pIvCiG 125 (242)
T cd00311 77 AEMLKDAGAKYVII-----GHSERRQYFGET-DEDVAKKVKAALEAGLTPILCVG 125 (242)
T ss_pred HHHHHHcCCCEEEe-----CcccccCcCCCC-cHHHHHHHHHHHHCCCEEEEEeC
Confidence 34699999999988 566666555544 56888999999999999999987
No 177
>PF08924 DUF1906: Domain of unknown function (DUF1906); InterPro: IPR015020 This entry represents a family of uncharacterised hypothetical bacterial proteins. ; PDB: 1SFS_A.
Probab=33.01 E-value=1.2e+02 Score=29.83 Aligned_cols=89 Identities=11% Similarity=0.178 Sum_probs=44.8
Q ss_pred CcccHHHHHHHHHhCCCCEEEEccccCccCCcCceeeec---CcchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCc
Q 003095 54 TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFE---GRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPL 130 (848)
Q Consensus 54 ~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~ydF~---g~~dl~~fl~la~~~GL~VilrpGPYicaEw~~GG~P~ 130 (848)
.+.+.++.++.|+++|+..+.+|.....+ ...|... |..|=..-+..|++.|+. .| -|-
T Consensus 36 ~k~Lt~~e~~~i~~~Gl~i~pIyq~~~~~---~~~~~~~~~~G~~dA~~A~~~A~~lG~p----~g-----------t~I 97 (136)
T PF08924_consen 36 QKNLTAGEVQDIRAAGLRIFPIYQGGGRE---TSDFTYGYAQGVADARDAVAAARALGFP----AG-----------TPI 97 (136)
T ss_dssp --B--HHHHHHHHHTT-EEEEEE-----------S-B--HHHHHHHHHHHHHHHHHTT------SS------------EE
T ss_pred cCCCCHHHHHHHHHCCCEEEEEEeccccc---ccccccHHHHHHHHHHHHHHHHHHcCCC----CC-----------CEE
Confidence 57889999999999999999998877222 2222222 567888999999999984 22 222
Q ss_pred ccCcCCCeeeecCChhhHHHHHHHHHHHHHHHhh
Q 003095 131 WLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQ 164 (848)
Q Consensus 131 WL~~~p~~~~Rt~d~~y~~~v~~~~~~l~~~l~~ 164 (848)
++--+-+ ..+..+.+.+..||+.+...|..
T Consensus 98 YfavD~d----~~~~~~~~~i~~Y~~g~~~~l~~ 127 (136)
T PF08924_consen 98 YFAVDYD----ATDAECDSAILPYFRGWNSALGA 127 (136)
T ss_dssp EEE--TS-----B-HH-------HHHHHHHHHGG
T ss_pred EEEeecC----CCchhhhhHHHHHHHHHHHHHhh
Confidence 2221111 24667778888888888888874
No 178
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=32.12 E-value=1.5e+02 Score=24.72 Aligned_cols=45 Identities=27% Similarity=0.370 Sum_probs=33.6
Q ss_pred cHHHHHHHHHhCCCCEEEEccccCccCCcCceeeecCcchHHHHHHHHHHcCcEEEEe
Q 003095 57 MWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLR 114 (848)
Q Consensus 57 ~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~Vilr 114 (848)
..++.++++|+.|++.|.+ .-|. ++. ...+|.+++++.||.||..
T Consensus 16 ~~~~~~~~a~~~g~~~v~i----TDh~------~~~---~~~~~~~~~~~~gi~~i~G 60 (67)
T smart00481 16 SPEELVKRAKELGLKAIAI----TDHG------NLF---GAVEFYKAAKKAGIKPIIG 60 (67)
T ss_pred CHHHHHHHHHHcCCCEEEE----eeCC------ccc---CHHHHHHHHHHcCCeEEEE
Confidence 4688999999999999976 1121 233 4678889999999988753
No 179
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=32.01 E-value=37 Score=33.18 Aligned_cols=50 Identities=28% Similarity=0.474 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHcCcEEEEecCcccccccC-CCCCCcccCcCCCeeeecCChhhHHHHHHHHHHHHHHHhh
Q 003095 96 DLVKFVKLVAEAGLYAHLRIGPYVCAEWN-FGGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQ 164 (848)
Q Consensus 96 dl~~fl~la~~~GL~VilrpGPYicaEw~-~GG~P~WL~~~p~~~~Rt~d~~y~~~v~~~~~~l~~~l~~ 164 (848)
||..||++|++.|+.|++-.-| |++.|- .-|+| .+.-+.++++|-.++++
T Consensus 37 Dl~l~L~~~k~~g~~~lfVi~P-vNg~wydytG~~------------------~~~r~~~y~kI~~~~~~ 87 (130)
T PF04914_consen 37 DLQLLLDVCKELGIDVLFVIQP-VNGKWYDYTGLS------------------KEMRQEYYKKIKYQLKS 87 (130)
T ss_dssp HHHHHHHHHHHTT-EEEEEE-----HHHHHHTT--------------------HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCceEEEecC-CcHHHHHHhCCC------------------HHHHHHHHHHHHHHHHH
Confidence 9999999999999998866645 444441 11111 23345677777777764
No 180
>COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=31.76 E-value=1.9e+02 Score=32.35 Aligned_cols=118 Identities=19% Similarity=0.179 Sum_probs=71.8
Q ss_pred HHHHHHHhCCCCEEEEccccCccCCcCceeeecCcchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCcccCcCCCee
Q 003095 60 DLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLHFIPGIQ 139 (848)
Q Consensus 60 d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~VilrpGPYicaEw~~GG~P~WL~~~p~~~ 139 (848)
.+++..++.|.+||-.--. - .=.||..+..+.+++.||.+|...|+|.-+.|+ .|+...|
T Consensus 52 ~e~~~~~a~Gg~TIVD~T~----------~--~~GRdv~~m~~vs~atglnIV~~TGfy~~~~~p-----~~~~~~~--- 111 (316)
T COG1735 52 AELKRLMARGGQTIVDATN----------I--GIGRDVLKMRRVAEATGLNIVAATGFYKAAFHP-----EYFALRP--- 111 (316)
T ss_pred HHHHHHHHcCCCeEeeCCc----------c--ccCcCHHHHHHHHHHhCCcEEEeccccccccch-----hHHhhCC---
Confidence 3666777889998864110 0 112799999999999999999999999988875 6665322
Q ss_pred eecCChhhHHHHHHHHHHHHHHHhhcccccccCCceEeecccccccccccccCcccHHHHHHHHHHHhhc-CCCcceEE
Q 003095 140 FRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGNIDSAYGAAGKSYIKWAAGMALSL-DTGVPWVM 217 (848)
Q Consensus 140 ~Rt~d~~y~~~v~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~-g~~vp~~~ 217 (848)
++.+.+-+...++ +.+ .|+=|..=|=-|-|.+. .=.+.=.+.|+..+++. ..++|+.+
T Consensus 112 -----------i~~~ae~~v~ei~-~Gi----~gT~ikAGiIk~~~~~~----~iTp~Eek~lrAaA~A~~~Tg~Pi~t 170 (316)
T COG1735 112 -----------IEELAEFVVKEIE-EGI----AGTGIKAGIIKEAGGSP----AITPLEEKSLRAAARAHKETGAPIST 170 (316)
T ss_pred -----------HHHHHHHHHHHHH-hcc----cCCccccceeeeccCcc----cCCHHHHHHHHHHHHHhhhcCCCeEE
Confidence 3444444444554 121 23333333334555432 12233445566666663 45788765
No 181
>PLN02784 alpha-amylase
Probab=31.57 E-value=91 Score=39.54 Aligned_cols=57 Identities=18% Similarity=0.132 Sum_probs=38.8
Q ss_pred HHHHHHHHhCCCCEEEEccccCccCC---cCce-ee----ecCcchHHHHHHHHHHcCcEEEEec
Q 003095 59 PDLIQKSKDGGLDVIETYVFWNLHEP---VRNQ-YN----FEGRYDLVKFVKLVAEAGLYAHLRI 115 (848)
Q Consensus 59 ~d~l~k~ka~GlNtV~~yv~Wn~hEp---~~G~-yd----F~g~~dl~~fl~la~~~GL~Vilrp 115 (848)
.++|..++++|+++|-+.=+.....+ .+.. |+ |....+|.++++.|+++||.||+-.
T Consensus 524 ~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDi 588 (894)
T PLN02784 524 GEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDA 588 (894)
T ss_pred HHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 45777889999999987533221111 1111 11 3345699999999999999999864
No 182
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=31.47 E-value=99 Score=39.89 Aligned_cols=74 Identities=11% Similarity=0.104 Sum_probs=54.9
Q ss_pred eeCCCC---CcccHHHHHHHHHhCCCCEEEEccccCccCCcCceeeecCc--chHHHHHHHHHHcCcEEEEecCcccccc
Q 003095 48 IHYPRS---TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGR--YDLVKFVKLVAEAGLYAHLRIGPYVCAE 122 (848)
Q Consensus 48 ~Hy~R~---~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~ydF~g~--~dl~~fl~la~~~GL~VilrpGPYicaE 122 (848)
+|..|+ +.+..++.++++++.||-.=.+++-|.+..- -+.|.|+-. -|..+|++..++.|+++++-.-|+|.+|
T Consensus 190 y~qSR~~Y~sq~eV~eva~~fre~~IP~DvIwlDidYm~g-~~~FTwD~~rFPdP~~mv~~Lh~~G~kvv~iidPgI~~d 268 (978)
T PLN02763 190 YQQCRWSYESAKRVAEIARTFREKKIPCDVVWMDIDYMDG-FRCFTFDKERFPDPKGLADDLHSIGFKAIWMLDPGIKAE 268 (978)
T ss_pred eeeccCCCCCHHHHHHHHHHHHHcCCCceEEEEehhhhcC-CCceeECcccCCCHHHHHHHHHHCCCEEEEEEcCCCccC
Confidence 455554 3455788999999999987777766665542 335666543 3889999999999999988878888754
No 183
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=30.71 E-value=2.1e+02 Score=30.29 Aligned_cols=127 Identities=16% Similarity=0.168 Sum_probs=72.7
Q ss_pred cccHHHHHHHHHhCCCCE-EEE--ccccCccCC---cCc--eeee-----------cC--cchHHHHHHHHHHcCcEEEE
Q 003095 55 PEMWPDLIQKSKDGGLDV-IET--YVFWNLHEP---VRN--QYNF-----------EG--RYDLVKFVKLVAEAGLYAHL 113 (848)
Q Consensus 55 ~~~W~d~l~k~ka~GlNt-V~~--yv~Wn~hEp---~~G--~ydF-----------~g--~~dl~~fl~la~~~GL~Vil 113 (848)
++.-.+.++++|+.|+.+ |+| |++|...+. .-. -+|+ +| +..+-+.|+.+.+.|..+.+
T Consensus 53 ~~fl~~l~~~~k~~gi~~~leTnG~~~~~~~~~l~~~~D~~l~DiK~~d~~~~~~~tG~~~~~il~nl~~l~~~g~~v~i 132 (213)
T PRK10076 53 AEFATRFLQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRVLENLRLLVSEGVNVIP 132 (213)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHhcCEEEEeeccCCHHHHHHHHCCCHHHHHHHHHHHHhCCCcEEE
Confidence 466678999999999874 444 455532221 111 1233 22 23455667778888999988
Q ss_pred ecCcccccccCCCCCCcccCcCCCeeeecCChhhHHHHHHHHHHHHHHHhhcccccccCCceEeecc---------cccc
Q 003095 114 RIGPYVCAEWNFGGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQI---------ENEY 184 (848)
Q Consensus 114 rpGPYicaEw~~GG~P~WL~~~p~~~~Rt~d~~y~~~v~~~~~~l~~~l~~~~~~~~~gGpII~~Qi---------ENEy 184 (848)
|. |. +|++ ++++.-++++.+|+..+. +. ++ .++-++- .=+|
T Consensus 133 R~-~v----------------IPg~---nd~~e~i~~ia~~l~~l~--~~--~~------~llpyh~~g~~Ky~~lg~~y 182 (213)
T PRK10076 133 RL-PL----------------IPGF---TLSRENMQQALDVLIPLG--IK--QI------HLLPFHQYGEPKYRLLGKTW 182 (213)
T ss_pred EE-EE----------------ECCC---CCCHHHHHHHHHHHHHcC--Cc--eE------EEecCCccchhHHHHcCCcC
Confidence 86 22 3654 356667777777776541 11 11 0111111 0022
Q ss_pred cccccccCcccHHHHHHHHHHHhhcCCCc
Q 003095 185 GNIDSAYGAAGKSYIKWAAGMALSLDTGV 213 (848)
Q Consensus 185 g~~~~~~~~~~~~y~~~l~~~~~~~g~~v 213 (848)
-.. .....+.+.|+.+++.+++.|+.+
T Consensus 183 ~~~--~~~~~~~~~l~~~~~~~~~~gl~~ 209 (213)
T PRK10076 183 SMK--EVPAPSSADVATMREMAERAGFQV 209 (213)
T ss_pred ccC--CCCCcCHHHHHHHHHHHHHcCCeE
Confidence 110 122467899999999999998875
No 184
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=30.12 E-value=1.1e+02 Score=33.91 Aligned_cols=88 Identities=19% Similarity=0.308 Sum_probs=58.7
Q ss_pred HHHHHHhCCCCEEEEccccCccCCcCceeeecCcchHHHHHHHHHHcCcE--EEEecCc--------ccccccCCCCCCc
Q 003095 61 LIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLY--AHLRIGP--------YVCAEWNFGGFPL 130 (848)
Q Consensus 61 ~l~k~ka~GlNtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~--VilrpGP--------YicaEw~~GG~P~ 130 (848)
+|++-.++|.+.+-|-.| ||.+ .+.+|++.|++.|+. |++.+-| ++ ++...-.+|.
T Consensus 168 ~Lk~K~~aGA~~~iTQ~~----------Fd~~---~~~~f~~~~~~~Gi~vPIi~GI~pi~s~~~~~~~-~~~~Gv~vP~ 233 (296)
T PRK09432 168 NLKRKVDAGANRAITQFF----------FDVE---SYLRFRDRCVSAGIDVEIVPGILPVSNFKQLKKF-ADMTNVRIPA 233 (296)
T ss_pred HHHHHHHcCCCeeecccc----------cchH---HHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHH-HHccCCCCCH
Confidence 466666789988888443 5555 899999999999954 5555555 24 6777778999
Q ss_pred ccCcCCCeeeecCC-hhhHHHHHHHHHHHHHHHhh
Q 003095 131 WLHFIPGIQFRTDN-EPFKAEMQRFTAKIVDMMKQ 164 (848)
Q Consensus 131 WL~~~p~~~~Rt~d-~~y~~~v~~~~~~l~~~l~~ 164 (848)
|+.+.=. +. .+| ...+++--++..++++.|.+
T Consensus 234 ~l~~~l~-~~-~d~~~~~~~~Gi~~a~e~i~~L~~ 266 (296)
T PRK09432 234 WMAKMFD-GL-DDDAETRKLVGASIAMDMVKILSR 266 (296)
T ss_pred HHHHHHH-hc-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9975211 01 134 33556666777777777663
No 185
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=30.04 E-value=1.4e+02 Score=36.58 Aligned_cols=109 Identities=17% Similarity=0.160 Sum_probs=74.2
Q ss_pred EEeEEEEEEeeCCCCCcccHHHHHHHHHhCCCCEEEEccccCccCCcCceeeecCcchHHHHHHHHHHcCcEEEEecCcc
Q 003095 39 KRRVLISGSIHYPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPY 118 (848)
Q Consensus 39 ~p~~~~sG~~Hy~R~~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~VilrpGPY 118 (848)
++-+.+++..|+++.+.+.=-++|++-.++|.+.+-|-.+++. + .+.+|++.+++.++.+|..+-|.
T Consensus 461 ~~~f~ig~A~~P~~~~~~~d~~~L~~Ki~aGAdf~iTQ~~fd~----------~---~~~~~~~~~~~~~vpIi~GImPi 527 (612)
T PRK08645 461 KTNFSIGGAFNPNVRNLDKEVKRLEKKIEAGADYFITQPVYDE----------E---LIEELLEATKHLGVPIFIGIMPL 527 (612)
T ss_pred CCceeeeEEeCCCCCChHHHHHHHHHHHHcCCCEEEecccCCH----------H---HHHHHHHHHhcCCCCEEEEeeec
Confidence 4557889999887665444445666667899999999665443 3 78889998887788888877773
Q ss_pred cc--------cccCCCCCCcccCcC-CCeeeecCChhhHHHHHHHHHHHHHHHh
Q 003095 119 VC--------AEWNFGGFPLWLHFI-PGIQFRTDNEPFKAEMQRFTAKIVDMMK 163 (848)
Q Consensus 119 ic--------aEw~~GG~P~WL~~~-p~~~~Rt~d~~y~~~v~~~~~~l~~~l~ 163 (848)
.. .+|..-=+|.|+.+. .. .. +....+++--++..++++.+.
T Consensus 528 ~s~k~~~~~~~~~~Gv~vP~~l~~~l~~--~~-d~~~~~~~gv~~a~e~i~~l~ 578 (612)
T PRK08645 528 VSYRNAEFLHNEVPGITLPEEIRERMRA--VE-DKEEAREEGVAIARELIDAAR 578 (612)
T ss_pred CCHHHHHHHHhCCCCCCCCHHHHHHHHh--cC-CchHHHHHHHHHHHHHHHHHH
Confidence 33 235445568888751 11 11 223567777777777777776
No 186
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=30.03 E-value=59 Score=34.91 Aligned_cols=56 Identities=11% Similarity=0.025 Sum_probs=38.3
Q ss_pred ccHHHHHHHHHhCCCCEEEEccccCccCCc----CceeeecCcchHHHHHHHHHHcCcEEEEec
Q 003095 56 EMWPDLIQKSKDGGLDVIETYVFWNLHEPV----RNQYNFEGRYDLVKFVKLVAEAGLYAHLRI 115 (848)
Q Consensus 56 ~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~----~G~ydF~g~~dl~~fl~la~~~GL~Vilrp 115 (848)
+.+++.++.++++|..+|.+ |..+... .-.|... ...|.++.++|+++|+.+.+.+
T Consensus 90 ~~~~~~i~~a~~lGa~~i~~---~~~~~~~~~~~~~~~~~~-~~~l~~l~~~a~~~gv~l~iE~ 149 (275)
T PRK09856 90 DMIKLAMDMAKEMNAGYTLI---SAAHAGYLTPPNVIWGRL-AENLSELCEYAENIGMDLILEP 149 (275)
T ss_pred HHHHHHHHHHHHhCCCEEEE---cCCCCCCCCCHHHHHHHH-HHHHHHHHHHHHHcCCEEEEec
Confidence 35667788999999999966 3223211 1122221 1368999999999999999886
No 187
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=29.70 E-value=2.2e+02 Score=30.67 Aligned_cols=103 Identities=12% Similarity=0.118 Sum_probs=55.8
Q ss_pred CCcccHHHHHHHHHhCCCCEEEEccccCccCCc-Cceee---e-cCcchHHHHHHHHHHcCcEEEEecCcccccccCCCC
Q 003095 53 STPEMWPDLIQKSKDGGLDVIETYVFWNLHEPV-RNQYN---F-EGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGG 127 (848)
Q Consensus 53 ~~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~-~G~yd---F-~g~~dl~~fl~la~~~GL~VilrpGPYicaEw~~GG 127 (848)
+.++.-+..-+.+++.|+..+..-. ..|.+. ++.-| . .....+++.|++|++.|..+|.-+|
T Consensus 54 ~~~~~~~~l~~~l~~~gl~i~~~~~--~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lG~~~i~~~~----------- 120 (283)
T PRK13209 54 WSREQRLALVNALVETGFRVNSMCL--SAHRRFPLGSEDDAVRAQALEIMRKAIQLAQDLGIRVIQLAG----------- 120 (283)
T ss_pred CCHHHHHHHHHHHHHcCCceeEEec--ccccccCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECC-----------
Confidence 4566666677778899998766421 112111 11100 0 0112578899999999999775321
Q ss_pred CCcccCcCCCeeeecCChhhHHHHHHHHHHHHHHHhhcccccccCCceEeeccccccc
Q 003095 128 FPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYG 185 (848)
Q Consensus 128 ~P~WL~~~p~~~~Rt~d~~y~~~v~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg 185 (848)
.+.|.. ..++...+.+...++++++..+++ | |-+.+||-.+
T Consensus 121 ~~~~~~--------~~~~~~~~~~~~~l~~l~~~A~~~-------G--V~i~iE~~~~ 161 (283)
T PRK13209 121 YDVYYE--------QANNETRRRFIDGLKESVELASRA-------S--VTLAFEIMDT 161 (283)
T ss_pred cccccc--------ccHHHHHHHHHHHHHHHHHHHHHh-------C--CEEEEeecCC
Confidence 122211 122344455556677777776633 3 3455677543
No 188
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=29.55 E-value=3.2e+02 Score=29.68 Aligned_cols=93 Identities=10% Similarity=0.020 Sum_probs=57.6
Q ss_pred HHHHHHHHhCCCCEEEEccccCccCCcCceeeecCcchHHHHHHHHHHcCcEE--EEecCcccccccCCCCCCcccCcCC
Q 003095 59 PDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYA--HLRIGPYVCAEWNFGGFPLWLHFIP 136 (848)
Q Consensus 59 ~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~V--ilrpGPYicaEw~~GG~P~WL~~~p 136 (848)
.+.++.+++.|+++|++++-.. +--....-...+.++|-+.++++++.+ +.-=+||.
T Consensus 14 ~~a~~~~~~~G~~~~qif~~~P----~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Hapy~----------------- 72 (274)
T TIGR00587 14 QAAYNRAAEIGATAFMFFLKSP----RWWRRPMLEEEVIDWFKAALETNKNLSQIVLVHAPYL----------------- 72 (274)
T ss_pred HHHHHHHHHhCCCEEEEEecCc----cccCCCCCCHHHHHHHHHHHHHcCCCCcceeccCCee-----------------
Confidence 5689999999999999965421 111111112237888888899998863 33334543
Q ss_pred CeeeecCChhhHHHHHHHHHHHHHHHhhcccccccCCceEeec
Q 003095 137 GIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQ 179 (848)
Q Consensus 137 ~~~~Rt~d~~y~~~v~~~~~~l~~~l~~~~~~~~~gGpII~~Q 179 (848)
+.+-+.|+..++...+.+.+.++.-+ .+ |.+++.+.
T Consensus 73 -iNlas~~~~~r~~sv~~~~~~i~~A~--~l----ga~~vv~H 108 (274)
T TIGR00587 73 -INLASPDEEKEEKSLDVLDEELKRCE--LL----GIMLYNFH 108 (274)
T ss_pred -eecCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEEC
Confidence 12335577777777777777776655 23 44455554
No 189
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=29.51 E-value=92 Score=34.47 Aligned_cols=61 Identities=20% Similarity=0.209 Sum_probs=43.7
Q ss_pred CcccHHHHHHHHHhCCCCEEEEccccCccCC--cCceeeecCcchHHHHHHHHHHcCcEEEEec
Q 003095 54 TPEMWPDLIQKSKDGGLDVIETYVFWNLHEP--VRNQYNFEGRYDLVKFVKLVAEAGLYAHLRI 115 (848)
Q Consensus 54 ~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp--~~G~ydF~g~~dl~~fl~la~~~GL~Vilrp 115 (848)
.++..++.++++++.|.+.|-+|.-+..-.+ .++.-.++ ...+.+++++|++.|+.|.+..
T Consensus 118 ~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~-~e~l~~~~~~A~~~g~~v~~H~ 180 (342)
T cd01299 118 GVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFS-EEELRAIVDEAHKAGLYVAAHA 180 (342)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcC-HHHHHHHHHHHHHcCCEEEEEe
Confidence 3677899999999999999999975432111 12211122 2378899999999999988874
No 190
>PLN02389 biotin synthase
Probab=28.91 E-value=68 Score=36.93 Aligned_cols=53 Identities=17% Similarity=0.219 Sum_probs=34.7
Q ss_pred cHHHHHHHHHhCCCCEEEEccc--cCccCCcCceeeecCcchHHHHHHHHHHcCcEEE
Q 003095 57 MWPDLIQKSKDGGLDVIETYVF--WNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAH 112 (848)
Q Consensus 57 ~W~d~l~k~ka~GlNtV~~yv~--Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~Vi 112 (848)
.=++.++++|++|++.+..-+- ..++...-..-+|+ +..+.++.|++.||.|-
T Consensus 176 l~~E~l~~LkeAGld~~~~~LeTs~~~y~~i~~~~s~e---~rl~ti~~a~~~Gi~v~ 230 (379)
T PLN02389 176 LEKEQAAQLKEAGLTAYNHNLDTSREYYPNVITTRSYD---DRLETLEAVREAGISVC 230 (379)
T ss_pred CCHHHHHHHHHcCCCEEEeeecCChHHhCCcCCCCCHH---HHHHHHHHHHHcCCeEe
Confidence 3478999999999998876322 22222111112444 67788999999999873
No 191
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=28.90 E-value=1e+02 Score=36.30 Aligned_cols=55 Identities=25% Similarity=0.332 Sum_probs=45.9
Q ss_pred eeCCCCCcccHHHHHHHHHhCCCCEEEEccccCccCCcCceeeecCcchHHHHHHHHHHcCcEEEEe
Q 003095 48 IHYPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLR 114 (848)
Q Consensus 48 ~Hy~R~~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~Vilr 114 (848)
.-|.+.|.+.-++.++++.+.|+..|+++.+-|.. +++...++.|+++|+.|.+.
T Consensus 88 ~G~~~~pddvv~~~v~~A~~~Gvd~irif~~lnd~------------~n~~~~v~~ak~~G~~v~~~ 142 (448)
T PRK12331 88 LGYRNYADDVVESFVQKSVENGIDIIRIFDALNDV------------RNLETAVKATKKAGGHAQVA 142 (448)
T ss_pred cccccCchhhHHHHHHHHHHCCCCEEEEEEecCcH------------HHHHHHHHHHHHcCCeEEEE
Confidence 44667788888899999999999999998876654 25888999999999988655
No 192
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=28.61 E-value=3.1e+02 Score=25.94 Aligned_cols=70 Identities=14% Similarity=0.220 Sum_probs=40.8
Q ss_pred eEEEEEEEecCCCCccccCCCceEEEeCCcceEEEEEECCEEEEEEeccCC-----CCeeEEeeeeccCCC-CcEEEEEE
Q 003095 478 YLWYSLSTNIKADEPLLEDGSKTVLHVQSLGHALHAFINGKLVGSGYGSSS-----NAKVTVDFPIALAPG-KNTFDLLS 551 (848)
Q Consensus 478 yl~Y~t~i~~~~~~~~~~~~~~~~L~i~~~~D~a~Vfvng~~vG~~~~~~~-----~~~~~~~~~i~l~~g-~~~L~ILv 551 (848)
.+.|++.|..+.++. -++.+. ..|.+.+||||+.+-...+... .........+.+.+| .+.|.|..
T Consensus 47 ~~~~~G~~~~~~~G~-------y~f~~~-~~d~~~l~idg~~vid~~~~~~~~~~~~~~~~~~~~v~l~~g~~y~i~i~y 118 (145)
T PF07691_consen 47 SVRWTGYFKPPETGT-------YTFSLT-SDDGARLWIDGKLVIDNWGNQGGGFFNSGPSSTSGTVTLEAGGKYPIRIEY 118 (145)
T ss_dssp EEEEEEEEEESSSEE-------EEEEEE-ESSEEEEEETTEEEEECSCTTTSTTTTTSBCCEEEEEEE-TT-EEEEEEEE
T ss_pred EEEEEEEEecccCce-------EEEEEE-ecccEEEEECCEEEEcCCccccccccccccceEEEEEEeeCCeeEEEEEEE
Confidence 456888887665542 234443 6789999999999976654321 001112223445554 67888766
Q ss_pred eccC
Q 003095 552 LTVG 555 (848)
Q Consensus 552 en~G 555 (848)
.+.+
T Consensus 119 ~~~~ 122 (145)
T PF07691_consen 119 FNRG 122 (145)
T ss_dssp EECS
T ss_pred EECC
Confidence 5544
No 193
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=28.50 E-value=1.1e+02 Score=32.31 Aligned_cols=44 Identities=23% Similarity=0.184 Sum_probs=35.2
Q ss_pred HHHHHhCCCCEEEEccccCccCCcCceeeecCcchHHHHHHHHHHcCcEEEEec
Q 003095 62 IQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRI 115 (848)
Q Consensus 62 l~k~ka~GlNtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~Vilrp 115 (848)
..++|++|++.|-+ -|..++ |..+ |+.+=++.|.++||.+|+..
T Consensus 74 ~~mLkd~G~~~vii-----GHSERR--f~Et---di~~Kv~~a~~~gl~~IvCi 117 (205)
T TIGR00419 74 AEMLKDIGAKGTLI-----NHSERR--MKLA---DIEKKIARLKELGLTSVVCT 117 (205)
T ss_pred HHHHHHcCCCEEEE-----CcccCC--CCcc---HHHHHHHHHHHCCCEEEEEE
Confidence 34689999998887 444444 6555 69999999999999999986
No 194
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=27.81 E-value=2.1e+02 Score=30.64 Aligned_cols=96 Identities=9% Similarity=0.011 Sum_probs=53.3
Q ss_pred Cceeeec-CcchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCcccCcCCCeeeecCChhhHHHHHHHHHHHHHHHhh
Q 003095 86 RNQYNFE-GRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQ 164 (848)
Q Consensus 86 ~G~ydF~-g~~dl~~fl~la~~~GL~VilrpGPYicaEw~~GG~P~WL~~~p~~~~Rt~d~~y~~~v~~~~~~l~~~l~~ 164 (848)
.|...+. +..++..+++.|++.|++|++..|= |..+. +. .+ ..++.- -+++.+.+...+++
T Consensus 36 ~G~l~~~~~~~~~~~~~~~~~~~~~kvl~sigg-----~~~~~---~~----~~---~~~~~~---r~~fi~~lv~~~~~ 97 (253)
T cd06545 36 NGTLNANPVRSELNSVVNAAHAHNVKILISLAG-----GSPPE---FT----AA---LNDPAK---RKALVDKIINYVVS 97 (253)
T ss_pred CCeEEecCcHHHHHHHHHHHHhCCCEEEEEEcC-----CCCCc---ch----hh---hcCHHH---HHHHHHHHHHHHHH
Confidence 4666664 3457889999999999999998861 22111 11 01 123432 34677788888876
Q ss_pred cccccccCCceEeecccccccccccccCcccHHHHHHHHHHHhhcC
Q 003095 165 EKLYASQGGPIILSQIENEYGNIDSAYGAAGKSYIKWAAGMALSLD 210 (848)
Q Consensus 165 ~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g 210 (848)
+++ =++.|+=|+... . ...=..+++.|++.+++.|
T Consensus 98 ~~~--------DGIdiDwE~~~~--~-~~~~~~fv~~Lr~~l~~~~ 132 (253)
T cd06545 98 YNL--------DGIDVDLEGPDV--T-FGDYLVFIRALYAALKKEG 132 (253)
T ss_pred hCC--------CceeEEeeccCc--c-HhHHHHHHHHHHHHHhhcC
Confidence 543 245555566421 0 1111234455555555444
No 195
>cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and their hypothetical homologs. Members in this subfamily show high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=27.36 E-value=1.9e+02 Score=33.05 Aligned_cols=53 Identities=15% Similarity=0.230 Sum_probs=36.7
Q ss_pred cHHHHHHHHHhCCCCEEEEccccCccCCcCceeeecCcchHHHHHHHHHHcCcEEEEec
Q 003095 57 MWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRI 115 (848)
Q Consensus 57 ~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~Vilrp 115 (848)
.|...|+++++.|++.|..+...-.-... .+.+ -...+++.|+++||.|+.++
T Consensus 246 ~~~~~l~~i~a~~a~~i~P~~~~l~~~~~--~~~~----~~~~~v~~Ah~~GL~V~~WT 298 (356)
T cd08560 246 TWSPSMDELKARGVNIIAPPIWMLVDPDE--NGKI----VPSEYAKAAKAAGLDIITWT 298 (356)
T ss_pred cHHHHHHHHHhCCccEecCchhhcccccc--cccc----CCHHHHHHHHHcCCEEEEEE
Confidence 48888999999999988765432222211 1112 24688999999999999764
No 196
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=27.21 E-value=20 Score=36.64 Aligned_cols=66 Identities=26% Similarity=0.403 Sum_probs=45.6
Q ss_pred eEEEEEEeeCCCC---CcccHHHHHHHHHhCCCCEEEEccccCccCCcCc--eeeecCcchHHHHHHHHHHcCcEEEEe
Q 003095 41 RVLISGSIHYPRS---TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRN--QYNFEGRYDLVKFVKLVAEAGLYAHLR 114 (848)
Q Consensus 41 ~~~~sG~~Hy~R~---~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G--~ydF~g~~dl~~fl~la~~~GL~Vilr 114 (848)
...-+|--.|.|+ .|-.-++ -+.++|.+.+-.-- --..| -|||-...+|.+|+++|+++||.+-|-
T Consensus 116 ~VVAaGYaDa~Rvgsv~Pl~~P~---vaa~ag~DvaMvDT-----aiKDGkslFdfm~~e~l~eFvd~Ah~hGL~~AlA 186 (235)
T COG1891 116 KVVAAGYADAHRVGSVSPLLLPE---VAAEAGADVAMVDT-----AIKDGKSLFDFMDEEELEEFVDLAHEHGLEVALA 186 (235)
T ss_pred eEEeccccchhhccCcCccccHH---HHHhcCCCEEEEec-----ccccchhHHhhhcHHHHHHHHHHHHHcchHHHhc
Confidence 3456777777785 3444443 46678888654421 12334 589988889999999999999998764
No 197
>PRK11372 lysozyme inhibitor; Provisional
Probab=27.20 E-value=1.3e+02 Score=28.56 Aligned_cols=18 Identities=22% Similarity=0.222 Sum_probs=11.2
Q ss_pred CCcchhHHHHHHHHHHHH
Q 003095 1 MASKEILLLVLCWGFVVL 18 (848)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~ 18 (848)
|.||.++.+.++++|+.+
T Consensus 1 ~~mk~ll~~~~~~lL~gC 18 (109)
T PRK11372 1 MSMKKLLIICLPVLLTGC 18 (109)
T ss_pred CchHHHHHHHHHHHHHHh
Confidence 778886655555555443
No 198
>PRK06703 flavodoxin; Provisional
Probab=27.18 E-value=2.8e+02 Score=27.00 Aligned_cols=101 Identities=10% Similarity=0.051 Sum_probs=60.1
Q ss_pred ECCEEeEEEEEEeeCCCCCcccHHHHHHHHHhCCCCEEEEccccCccCCcCceeeecCcchHHHHHHHHHHcCcEEEEec
Q 003095 36 IGGKRRVLISGSIHYPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRI 115 (848)
Q Consensus 36 ~dG~p~~~~sG~~Hy~R~~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~Vilrp 115 (848)
+..-..++++...+-.-.+|+.+++-+..+++.-++...+.+|-...-. |.. .....+.+-+..++.|..++.++
T Consensus 46 l~~~d~viigspt~~~g~~p~~~~~f~~~l~~~~l~~k~~~vfg~g~~~----y~~-~~~a~~~l~~~l~~~G~~~~~~~ 120 (151)
T PRK06703 46 LLAYDGIILGSYTWGDGDLPYEAEDFHEDLENIDLSGKKVAVFGSGDTA----YPL-FCEAVTIFEERLVERGAELVQEG 120 (151)
T ss_pred HhcCCcEEEEECCCCCCcCcHHHHHHHHHHhcCCCCCCEEEEEccCCCC----hHH-HHHHHHHHHHHHHHCCCEEcccC
Confidence 4444556665555533445667787788887766665555555221000 110 12345667777789999887763
Q ss_pred CcccccccCCCCCCcccCcCCCeeeec--CChhhHHHHHHHHHHHHHHHh
Q 003095 116 GPYVCAEWNFGGFPLWLHFIPGIQFRT--DNEPFKAEMQRFTAKIVDMMK 163 (848)
Q Consensus 116 GPYicaEw~~GG~P~WL~~~p~~~~Rt--~d~~y~~~v~~~~~~l~~~l~ 163 (848)
+++.. ++..-++++++|.++|++.++
T Consensus 121 ----------------------~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 148 (151)
T PRK06703 121 ----------------------LKIELAPETDEDVEKCSNFAIAFAEKFA 148 (151)
T ss_pred ----------------------eEEecCCCchhHHHHHHHHHHHHHHHHH
Confidence 12221 234677888999999887765
No 199
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=26.85 E-value=88 Score=38.91 Aligned_cols=55 Identities=27% Similarity=0.339 Sum_probs=40.4
Q ss_pred HHHHHHhCCCCEEEE-ccccCccCCcC---c-eeee----------------cC-----cchHHHHHHHHHHcCcEEEEe
Q 003095 61 LIQKSKDGGLDVIET-YVFWNLHEPVR---N-QYNF----------------EG-----RYDLVKFVKLVAEAGLYAHLR 114 (848)
Q Consensus 61 ~l~k~ka~GlNtV~~-yv~Wn~hEp~~---G-~ydF----------------~g-----~~dl~~fl~la~~~GL~Vilr 114 (848)
.|.-+|.+|+++|+. .|+.-..|+.. | .|+| ++ .+.+..+|+.++++||-|||-
T Consensus 205 ~i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILD 284 (697)
T COG1523 205 IIDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILD 284 (697)
T ss_pred HHHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEE
Confidence 388999999999995 67765555543 2 1222 22 247888899999999999997
Q ss_pred c
Q 003095 115 I 115 (848)
Q Consensus 115 p 115 (848)
.
T Consensus 285 V 285 (697)
T COG1523 285 V 285 (697)
T ss_pred E
Confidence 5
No 200
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=26.34 E-value=1.4e+02 Score=36.68 Aligned_cols=75 Identities=13% Similarity=0.249 Sum_probs=51.8
Q ss_pred CcccHHHHHHHHHhCCCCEEEEc-cc-----cC--ccCCcCceeee---------cCcchHHHHHHHHHHcCcEEEEecC
Q 003095 54 TPEMWPDLIQKSKDGGLDVIETY-VF-----WN--LHEPVRNQYNF---------EGRYDLVKFVKLVAEAGLYAHLRIG 116 (848)
Q Consensus 54 ~~~~W~d~l~k~ka~GlNtV~~y-v~-----Wn--~hEp~~G~ydF---------~g~~dl~~fl~la~~~GL~VilrpG 116 (848)
.+..|+ .++.+|+++|-+- ++ |. +.--.-|-||- ....|++++++.|++.||+||+-.=
T Consensus 76 ~~~~wd----yL~~LGV~~iwl~P~~~SGgi~g~~~tP~~D~gyDi~d~~Idp~~GT~eDf~~L~~~Ah~~G~~vi~DlV 151 (688)
T TIGR02455 76 DDALWK----ALSEIGVQGIHNGPIKLSGGIRGREFTPSIDGNFDRISFDIDPLLGSEEELIQLSRMAAAHNAITIDDII 151 (688)
T ss_pred ChHHHH----HHHHhCCCEEEeCcceecccccccCCCCCCCCCCCcccCccCcccCCHHHHHHHHHHHHHCCCEEEEEeC
Confidence 566676 6889999999752 32 33 22223455653 3346999999999999999996542
Q ss_pred --------cccccccCCCCCCccc
Q 003095 117 --------PYVCAEWNFGGFPLWL 132 (848)
Q Consensus 117 --------PYicaEw~~GG~P~WL 132 (848)
||.-||.+.+-+|.|.
T Consensus 152 pnHTs~ghdF~lAr~~~~~Y~g~Y 175 (688)
T TIGR02455 152 PAHTGKGADFRLAELAHGDYPGLY 175 (688)
T ss_pred CCCCCCCcchHHHhhcCCCCCCce
Confidence 3677777777777766
No 201
>PRK10426 alpha-glucosidase; Provisional
Probab=25.49 E-value=4.1e+02 Score=32.81 Aligned_cols=64 Identities=17% Similarity=0.307 Sum_probs=43.0
Q ss_pred cHHHHHHHHHhCCCCEEEEcc-ccCccCCc----Cc--eeeecCc--chHHHHHHHHHHcCcEEEEecCcccc
Q 003095 57 MWPDLIQKSKDGGLDVIETYV-FWNLHEPV----RN--QYNFEGR--YDLVKFVKLVAEAGLYAHLRIGPYVC 120 (848)
Q Consensus 57 ~W~d~l~k~ka~GlNtV~~yv-~Wn~hEp~----~G--~ydF~g~--~dl~~fl~la~~~GL~VilrpGPYic 120 (848)
..++.++++|+.||.+=.+++ .|...... .. .|.|+-. -|.+++++..++.|++|++..=|||+
T Consensus 222 ~v~~v~~~~r~~~IP~d~i~lddw~~~~~~~~g~~~~~~~~~d~~~FPdp~~mi~~L~~~G~k~v~~i~P~v~ 294 (635)
T PRK10426 222 VVQKKLDTMRNAGVKVNGIWAQDWSGIRMTSFGKRLMWNWKWDSERYPQLDSRIKQLNEEGIQFLGYINPYLA 294 (635)
T ss_pred HHHHHHHHHHHcCCCeeEEEEecccccccccccccccccceEChhhCCCHHHHHHHHHHCCCEEEEEEcCccC
Confidence 456789999999987655544 35422211 11 1333322 38999999999999999998877764
No 202
>TIGR01698 PUNP purine nucleotide phosphorylase. methylthioadenosine.
Probab=25.47 E-value=95 Score=33.48 Aligned_cols=41 Identities=12% Similarity=0.217 Sum_probs=32.6
Q ss_pred EECCEEeEEEEEEeeCCCC-CcccHHHHHHHHHhCCCCEEEE
Q 003095 35 VIGGKRRVLISGSIHYPRS-TPEMWPDLIQKSKDGGLDVIET 75 (848)
Q Consensus 35 ~~dG~p~~~~sG~~Hy~R~-~~~~W~d~l~k~ka~GlNtV~~ 75 (848)
.+.|+++..++|.+|+... ...+-+--++.||++|+..|=.
T Consensus 47 ~l~g~~V~~l~Gr~H~yeg~~~~~v~~~i~al~~lGv~~ii~ 88 (237)
T TIGR01698 47 RIGDGPVLVLGGRTHAYEGGDARAVVHPVRTARATGAETLIL 88 (237)
T ss_pred EECCEEEEEEcCCCcccCCCcHHHhHHHHHHHHHcCCCEEEE
Confidence 4689999999999997664 4444478899999999987643
No 203
>PLN02429 triosephosphate isomerase
Probab=25.06 E-value=1.2e+02 Score=34.02 Aligned_cols=44 Identities=23% Similarity=0.179 Sum_probs=33.2
Q ss_pred HHHHhCCCCEEEEccccCccCCcCceeeecCcchHHHHHHH----HHHcCcEEEEecC
Q 003095 63 QKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKL----VAEAGLYAHLRIG 116 (848)
Q Consensus 63 ~k~ka~GlNtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~l----a~~~GL~VilrpG 116 (848)
.++|++|++.|-+ -|..++-.|.-+ ++++.. |.++||.+|+..|
T Consensus 141 ~mLkd~Gv~~Vii-----GHSERR~~f~Et-----d~~V~~Kv~~al~~GL~pIvCIG 188 (315)
T PLN02429 141 EQLKDLGCKWVIL-----GHSERRHVIGEK-----DEFIGKKAAYALSEGLGVIACIG 188 (315)
T ss_pred HHHHHcCCCEEEe-----CccccCCCCCcC-----HHHHHHHHHHHHHCcCEEEEEcC
Confidence 4689999998888 565566555533 555555 9999999999987
No 204
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=24.76 E-value=1.5e+02 Score=32.44 Aligned_cols=49 Identities=18% Similarity=0.205 Sum_probs=40.9
Q ss_pred CCcccHHHHHHHHHhCCCCEEEEccccCccCCcCceeeecCcchHHHHHHHHHHcCcEEEE
Q 003095 53 STPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHL 113 (848)
Q Consensus 53 ~~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~Vil 113 (848)
.|.+.=++++++..+.|+..|+++++.|.. ..+...++.|++.|+.|..
T Consensus 88 ~p~~~~~~di~~~~~~g~~~iri~~~~~~~------------~~~~~~i~~ak~~G~~v~~ 136 (275)
T cd07937 88 YPDDVVELFVEKAAKNGIDIFRIFDALNDV------------RNLEVAIKAVKKAGKHVEG 136 (275)
T ss_pred CCcHHHHHHHHHHHHcCCCEEEEeecCChH------------HHHHHHHHHHHHCCCeEEE
Confidence 455567889999999999999998886652 2789999999999998775
No 205
>PRK10658 putative alpha-glucosidase; Provisional
Probab=24.69 E-value=1.5e+02 Score=36.85 Aligned_cols=65 Identities=18% Similarity=0.339 Sum_probs=46.6
Q ss_pred cccHHHHHHHHHhCCCCE--EEEccccCccCC-cCceeeecCc--chHHHHHHHHHHcCcEEEEecCccccc
Q 003095 55 PEMWPDLIQKSKDGGLDV--IETYVFWNLHEP-VRNQYNFEGR--YDLVKFVKLVAEAGLYAHLRIGPYVCA 121 (848)
Q Consensus 55 ~~~W~d~l~k~ka~GlNt--V~~yv~Wn~hEp-~~G~ydF~g~--~dl~~fl~la~~~GL~VilrpGPYica 121 (848)
.+...+.++++|+.||-. |..-.+|- +. .-+.|.|+-. -|.+++++..++.|++|++..=|||..
T Consensus 282 e~~v~~~~~~~r~~~iP~d~i~lD~~w~--~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~i~P~i~~ 351 (665)
T PRK10658 282 EATVNSFIDGMAERDLPLHVFHFDCFWM--KEFQWCDFEWDPRTFPDPEGMLKRLKAKGLKICVWINPYIAQ 351 (665)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEchhhh--cCCceeeeEEChhhCCCHHHHHHHHHHCCCEEEEeccCCcCC
Confidence 344577889999999874 44444553 22 2346666533 288999999999999999999888853
No 206
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=24.57 E-value=1.1e+02 Score=28.93 Aligned_cols=44 Identities=14% Similarity=0.288 Sum_probs=31.7
Q ss_pred CCcccHHHHHHHHHhCCCCEEEEccccCccCCcCceeeecCcchHHHHHHHHHHcCcEEE
Q 003095 53 STPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAH 112 (848)
Q Consensus 53 ~~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~Vi 112 (848)
.+++...+.++.+++.|+..|=.. +| ..-++++++|+++||.++
T Consensus 63 ~~~~~~~~~v~~~~~~g~~~v~~~---------~g-------~~~~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 63 VPPDKVPEIVDEAAALGVKAVWLQ---------PG-------AESEELIEAAREAGIRVI 106 (116)
T ss_dssp S-HHHHHHHHHHHHHHT-SEEEE----------TT-------S--HHHHHHHHHTT-EEE
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEE---------cc-------hHHHHHHHHHHHcCCEEE
Confidence 378899999999999998877552 22 256889999999999966
No 207
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=24.31 E-value=56 Score=34.37 Aligned_cols=16 Identities=31% Similarity=0.580 Sum_probs=14.5
Q ss_pred ceEEEEECCeeeeecc
Q 003095 649 GKGEAWVNGQSIGRYW 664 (848)
Q Consensus 649 gKG~vwVNG~nlGRYW 664 (848)
.+|.|||||++|.|.=
T Consensus 55 t~G~i~~~~~dl~~l~ 70 (223)
T COG2884 55 TRGKILVNGHDLSRLK 70 (223)
T ss_pred CCceEEECCeeccccc
Confidence 6799999999999983
No 208
>PLN02229 alpha-galactosidase
Probab=24.19 E-value=1.4e+02 Score=35.07 Aligned_cols=73 Identities=14% Similarity=0.177 Sum_probs=49.8
Q ss_pred EeeCCCCCcccHHHHHHHH-----HhCCCCEEEEccccCccCC-cCcee-----eecCcchHHHHHHHHHHcCcEE--EE
Q 003095 47 SIHYPRSTPEMWPDLIQKS-----KDGGLDVIETYVFWNLHEP-VRNQY-----NFEGRYDLVKFVKLVAEAGLYA--HL 113 (848)
Q Consensus 47 ~~Hy~R~~~~~W~d~l~k~-----ka~GlNtV~~yv~Wn~hEp-~~G~y-----dF~g~~dl~~fl~la~~~GL~V--il 113 (848)
+..++.+..+.-++..+.| |++|.+.|-+---|...+. .-|.+ .|- .-+..+.+..++.||+. -.
T Consensus 71 n~~~~~i~E~~i~~~ad~~v~~Gl~~~Gy~yv~iDDgW~~~~rd~~G~l~~d~~rFP--~G~k~ladyiH~~GlKfGIy~ 148 (427)
T PLN02229 71 NFFACNINETVIKETADALVSTGLADLGYIHVNIDDCWSNLKRDSKGQLVPDPKTFP--SGIKLLADYVHSKGLKLGIYS 148 (427)
T ss_pred hhhCcccCHHHHHHHHHHHHHhHHHhCCCEEEEEcCCcCCCCcCCCCCEEEChhhcC--CcHHHHHHHHHHCCCceEEec
Confidence 3344556666667777764 9999999999999975432 23433 232 12888899999999984 36
Q ss_pred ecCccccc
Q 003095 114 RIGPYVCA 121 (848)
Q Consensus 114 rpGPYica 121 (848)
-+|...|+
T Consensus 149 d~G~~TC~ 156 (427)
T PLN02229 149 DAGVFTCQ 156 (427)
T ss_pred cCCCcccC
Confidence 67777774
No 209
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=23.99 E-value=1.8e+02 Score=32.44 Aligned_cols=67 Identities=15% Similarity=0.356 Sum_probs=48.3
Q ss_pred CcccHHHHHHHHHhCCCCEEEEccc-cCc-cCCcCc-----eeeecCc--chHHHHHHHHHHcCcEEEEecCcccc
Q 003095 54 TPEMWPDLIQKSKDGGLDVIETYVF-WNL-HEPVRN-----QYNFEGR--YDLVKFVKLVAEAGLYAHLRIGPYVC 120 (848)
Q Consensus 54 ~~~~W~d~l~k~ka~GlNtV~~yv~-Wn~-hEp~~G-----~ydF~g~--~dl~~fl~la~~~GL~VilrpGPYic 120 (848)
+.+.-++.++++++.||-.=.+++- |.. ++..-| .|+|+-. -|..++++..++.|++|++..=|+|+
T Consensus 21 s~~~v~~~~~~~~~~~iP~d~i~lddw~~~~~~~~g~~~~~~f~~d~~~FPdp~~mi~~Lh~~G~~~~~~i~P~v~ 96 (317)
T cd06594 21 GTDKVLEALEKARAAGVKVAGLWLQDWTGRRETSFGDRLWWNWEWDPERYPGLDELIEELKARGIRVLTYINPYLA 96 (317)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEccccCcccccccceeeeeeEEChhhCCCHHHHHHHHHHCCCEEEEEecCcee
Confidence 6777899999999999987666554 632 232223 2344432 38999999999999999988766664
No 210
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=23.89 E-value=91 Score=35.35 Aligned_cols=95 Identities=18% Similarity=0.295 Sum_probs=0.0
Q ss_pred HHHHHHHHcCcEEEEecCcccccccCCCCCCcccCcCCCeeeecCChhhHHHHHHHHHHHHHHHhhcccccccCCceEee
Q 003095 99 KFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILS 178 (848)
Q Consensus 99 ~fl~la~~~GL~VilrpGPYicaEw~~GG~P~WL~~~p~~~~Rt~d~~y~~~v~~~~~~l~~~l~~~~~~~~~gGpII~~ 178 (848)
..++.|+++|+.|+-- |.-||+ +-+.|+. .+-.++ -+...++.++|++..+.+.+ .| +.+
T Consensus 50 ~~idaAHknGV~Vlgt----i~~e~~--~~~~~~~-----~lL~~~---~~~~~~~a~kLv~lak~yGf----DG--w~i 109 (339)
T cd06547 50 DWINAAHRNGVPVLGT----FIFEWT--GQVEWLE-----DFLKKD---EDGSFPVADKLVEVAKYYGF----DG--WLI 109 (339)
T ss_pred HHHHHHHhcCCeEEEE----EEecCC--CchHHHH-----HHhccC---cccchHHHHHHHHHHHHhCC----Cc--eEe
Q ss_pred cccccc-cccccccCcccHHHHHHHHHHHhhc--CCCcceE
Q 003095 179 QIENEY-GNIDSAYGAAGKSYIKWAAGMALSL--DTGVPWV 216 (848)
Q Consensus 179 QiENEy-g~~~~~~~~~~~~y~~~l~~~~~~~--g~~vp~~ 216 (848)
-+||.. .. .....-.+|++.|++.+++. +..|-|+
T Consensus 110 N~E~~~~~~---~~~~~l~~F~~~L~~~~~~~~~~~~v~WY 147 (339)
T cd06547 110 NIETELGDA---EKAKRLIAFLRYLKAKLHENVPGSLVIWY 147 (339)
T ss_pred eeeccCCcH---HHHHHHHHHHHHHHHHHhhcCCCcEEEEE
No 211
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=23.76 E-value=96 Score=33.30 Aligned_cols=59 Identities=19% Similarity=0.071 Sum_probs=37.8
Q ss_pred ccHHHHHHHHHhCCCCEEEEccccCccCCcC-ceeeecCcchHHHHHHHHHHcCcEEEEec
Q 003095 56 EMWPDLIQKSKDGGLDVIETYVFWNLHEPVR-NQYNFEGRYDLVKFVKLVAEAGLYAHLRI 115 (848)
Q Consensus 56 ~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~-G~ydF~g~~dl~~fl~la~~~GL~Vilrp 115 (848)
+++++.++.++++|.+.|.+.-+-...++.. -.++. -...|.++.++|+++|+.+.+.+
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~-~~~~l~~l~~~a~~~gv~l~lE~ 153 (284)
T PRK13210 94 EIMKKAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQR-FIEGLAWAVEQAAAAQVMLAVEI 153 (284)
T ss_pred HHHHHHHHHHHHhCCCEEEECCcccccccccHHHHHH-HHHHHHHHHHHHHHhCCEEEEEe
Confidence 4578888999999999998631100001111 11111 01368888999999999998886
No 212
>PRK14565 triosephosphate isomerase; Provisional
Probab=23.55 E-value=1.4e+02 Score=32.13 Aligned_cols=49 Identities=18% Similarity=0.215 Sum_probs=35.5
Q ss_pred HHHHHhCCCCEEEEccccCccCCcCceeeecCcchHHHHHHHHHHcCcEEEEecC
Q 003095 62 IQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIG 116 (848)
Q Consensus 62 l~k~ka~GlNtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~VilrpG 116 (848)
.+++|++|++.|-+ -|..++-.|+-+ +..+.+=++.|.++||.+|++.|
T Consensus 78 ~~mLkd~G~~~vii-----GHSERR~~f~Et-d~~V~~Kv~~al~~gl~pIvCiG 126 (237)
T PRK14565 78 AKMLKECGCSYVIL-----GHSERRSTFHET-DSDIRLKAESAIESGLIPIICVG 126 (237)
T ss_pred HHHHHHcCCCEEEE-----CcccccCcCCcC-HHHHHHHHHHHHHCCCEEEEEcC
Confidence 35789999999888 566666555533 22333334899999999999987
No 213
>PRK07094 biotin synthase; Provisional
Probab=23.40 E-value=70 Score=35.52 Aligned_cols=50 Identities=18% Similarity=0.115 Sum_probs=32.5
Q ss_pred HHHHHHHHhCCCCEEEEccc---cCccCCcCceeeecCcchHHHHHHHHHHcCcEE
Q 003095 59 PDLIQKSKDGGLDVIETYVF---WNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYA 111 (848)
Q Consensus 59 ~d~l~k~ka~GlNtV~~yv~---Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~V 111 (848)
++.+++||++|++.|...+- -..++.......++ +..+.++.+++.|+.|
T Consensus 129 ~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~~~~s~~---~~~~~i~~l~~~Gi~v 181 (323)
T PRK07094 129 YEEYKAWKEAGADRYLLRHETADKELYAKLHPGMSFE---NRIACLKDLKELGYEV 181 (323)
T ss_pred HHHHHHHHHcCCCEEEeccccCCHHHHHHhCCCCCHH---HHHHHHHHHHHcCCee
Confidence 57788888888888876432 22222221234444 7778899999999864
No 214
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=23.29 E-value=1.6e+02 Score=23.78 Aligned_cols=55 Identities=16% Similarity=0.297 Sum_probs=39.1
Q ss_pred cccHHHHHHHHHhCCCCEEEEccccCccCCcCceeeecCcchHHHHHHHHHHcCcEE
Q 003095 55 PEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYA 111 (848)
Q Consensus 55 ~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~V 111 (848)
|..-.+.+.-+.+.|+|.+.++. +...+.....+-|.-+ +.++.++..+++|..|
T Consensus 10 pG~L~~i~~~l~~~~~nI~~i~~-~~~~~~~~~~v~~~ve-~~~~~~~~L~~~G~~v 64 (65)
T cd04882 10 PGGLHEILQILSEEGINIEYMYA-FVEKKGGKALLIFRTE-DIEKAIEVLQERGVEL 64 (65)
T ss_pred CcHHHHHHHHHHHCCCChhheEE-EccCCCCeEEEEEEeC-CHHHHHHHHHHCCceE
Confidence 34456788889999999988876 3333234455555433 4889999999999765
No 215
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=23.27 E-value=94 Score=33.19 Aligned_cols=59 Identities=10% Similarity=-0.059 Sum_probs=38.8
Q ss_pred ccHHHHHHHHHhCCCCEEEEccccCccCCcCce-eeecCcchHHHHHHHHHHcCcEEEEec
Q 003095 56 EMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQ-YNFEGRYDLVKFVKLVAEAGLYAHLRI 115 (848)
Q Consensus 56 ~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~-ydF~g~~dl~~fl~la~~~GL~Vilrp 115 (848)
+..++.++.++++|..+|.+...+.--...+.+ ++ .-...|.++.++|++.|+.+.+.|
T Consensus 85 ~~~~~~i~~a~~lga~~i~~~~g~~~~~~~~~~~~~-~~~~~l~~l~~~a~~~Gv~l~lE~ 144 (258)
T PRK09997 85 DGVAAAIRYARALGNKKINCLVGKTPAGFSSEQIHA-TLVENLRYAANMLMKEDILLLIEP 144 (258)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCCCCCHHHHHH-HHHHHHHHHHHHHHHcCCEEEEEe
Confidence 446788889999999999874433211111111 11 112467888889999999999987
No 216
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=23.22 E-value=1.1e+03 Score=26.58 Aligned_cols=53 Identities=19% Similarity=0.328 Sum_probs=33.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeeeeeeeeeccCCCCCCCCCCCccccccCCCCCCCCCCCCChhhHHHHHHHHHHHhh
Q 003095 265 VPYRPVEDLAFAVARFFQRGGTFQNYYMYHGGTNFDRTSGGPFISTSYDYDAPLDEYGLIRQPKWGHLKDLHKAIKLC 342 (848)
Q Consensus 265 ~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~Ga~~~~TSYDYdApl~E~G~~~t~Ky~~lr~l~~~~~~~ 342 (848)
...++++.+...+.+..++|+++ =+=-| .+.+|.+..+--..||++...++..
T Consensus 288 ~~~ks~~~li~~l~~~vs~ngnl---LLNig----------------------P~~dG~ip~~~~~~L~e~G~Wl~~n 340 (346)
T PF01120_consen 288 EKYKSADELIDILVDSVSRNGNL---LLNIG----------------------PDPDGTIPEEQVERLREIGDWLKVN 340 (346)
T ss_dssp CGS--HHHHHHHHHHHHTBTEEE---EEEE-------------------------TTSS--HHHHHHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHhccCceE---EEecC----------------------CCCCCCcCHHHHHHHHHHHHHHHhc
Confidence 34568888888888888998764 22222 3356666667778899999888754
No 217
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=23.03 E-value=3.9e+02 Score=31.28 Aligned_cols=89 Identities=11% Similarity=0.085 Sum_probs=58.3
Q ss_pred HHHHHHHHhCCCCEEEEccc----cCccCCcCceeeecCcchHHHHHHHHHHcCcEE--EEecCcccccccCCCCCCccc
Q 003095 59 PDLIQKSKDGGLDVIETYVF----WNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYA--HLRIGPYVCAEWNFGGFPLWL 132 (848)
Q Consensus 59 ~d~l~k~ka~GlNtV~~yv~----Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~V--ilrpGPYicaEw~~GG~P~WL 132 (848)
...++.+.+.|.|++++++- |..-... ..++++|.++++++||.+ ++-=+||.
T Consensus 144 ~~a~~~a~~~g~~afqiF~~npr~w~~~~~~--------~~~~~~f~~~~~~~gi~~~~i~~HapYl------------- 202 (413)
T PTZ00372 144 DNSPINAYNIAGQAFALFLKNQRTWNSPPLS--------DETIDKFKENCKKYNYDPKFILPHGSYL------------- 202 (413)
T ss_pred HHHHHHHHHcCCCEEEEEcCCCccCCCCCCC--------HHHHHHHHHHHHHcCCCcceEEeecCce-------------
Confidence 34778899999999999864 5433322 238999999999998852 33345663
Q ss_pred CcCCCeeeecCChhhHHHHHHHHHHHHHHHhhcccccccCCceEeec
Q 003095 133 HFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQ 179 (848)
Q Consensus 133 ~~~p~~~~Rt~d~~y~~~v~~~~~~l~~~l~~~~~~~~~gGpII~~Q 179 (848)
+.+-+.|+..++...+.|.+-+.+-. .+ |-+.+-++
T Consensus 203 -----INLASpd~e~rekSv~~~~~eL~rA~--~L----Ga~~VV~H 238 (413)
T PTZ00372 203 -----INLANPDKEKREKSYDAFLDDLQRCE--QL----GIKLYNFH 238 (413)
T ss_pred -----ecCCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEEC
Confidence 22344567666666666666666655 23 44566665
No 218
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=22.90 E-value=1.4e+02 Score=32.15 Aligned_cols=48 Identities=27% Similarity=0.467 Sum_probs=37.0
Q ss_pred ccHHHHHHHHHhCCCCEEEEccccCccCCcCceeeecCcchHHHHHHHHHHcCcEEE-EecCccccc
Q 003095 56 EMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAH-LRIGPYVCA 121 (848)
Q Consensus 56 ~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~Vi-lrpGPYica 121 (848)
+.-++.++++|++|+ -|+.+| +|. .+-++.|++.|...| |-+|||..+
T Consensus 113 ~~l~~~i~~L~~~gI-rVSLFi-----dP~------------~~qi~~A~~~GAd~VELhTG~yA~a 161 (239)
T PRK05265 113 DKLKPAIARLKDAGI-RVSLFI-----DPD------------PEQIEAAAEVGADRIELHTGPYADA 161 (239)
T ss_pred HHHHHHHHHHHHCCC-EEEEEe-----CCC------------HHHHHHHHHhCcCEEEEechhhhcC
Confidence 445778888899998 667755 454 456889999999876 999999875
No 219
>KOG3625 consensus Alpha amylase [Carbohydrate transport and metabolism]
Probab=22.90 E-value=69 Score=40.50 Aligned_cols=56 Identities=20% Similarity=0.409 Sum_probs=41.6
Q ss_pred CcccHHHHHHHHHhCCCCEEEE------------ccccCccCC-----c-CceeeecCcchHHHHHHHHHHc-CcEEE
Q 003095 54 TPEMWPDLIQKSKDGGLDVIET------------YVFWNLHEP-----V-RNQYNFEGRYDLVKFVKLVAEA-GLYAH 112 (848)
Q Consensus 54 ~~~~W~d~l~k~ka~GlNtV~~------------yv~Wn~hEp-----~-~G~ydF~g~~dl~~fl~la~~~-GL~Vi 112 (848)
|-+.|+.+|+++|+.|.|+|.. |-.-++||- + -++|.|+ |+..+++-+++. ++.-|
T Consensus 140 pl~eWeprL~va~e~gYNmIHfTPlqelG~S~S~YSl~dql~~~~~~~~~~~k~s~e---DV~~lV~~l~rewnvlsi 214 (1521)
T KOG3625|consen 140 PLDEWEPRLRVAKESGYNMIHFTPLQELGLSRSCYSLADQLELNPDFSRPNRKYSFE---DVGQLVEKLKREWNVLSI 214 (1521)
T ss_pred ChhhhhHHHHHHHHcCCceEeeeeHHHhccCCCccchHhhhhcChhhhccCCCCCHH---HHHHHHHHHHhhcCeeee
Confidence 6799999999999999999973 333344442 2 3568888 999999988753 65544
No 220
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=22.81 E-value=65 Score=36.51 Aligned_cols=51 Identities=16% Similarity=0.227 Sum_probs=32.6
Q ss_pred HHHHHHHHHhCCCCEEE-----EccccCccCCcCceeeecCcchHHHHHHHHHHcCcEE
Q 003095 58 WPDLIQKSKDGGLDVIE-----TYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYA 111 (848)
Q Consensus 58 W~d~l~k~ka~GlNtV~-----~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~V 111 (848)
-++.|+++|++|++.+- ++..--++.-.|+....+ +..+.++.|++.|+.+
T Consensus 149 ~~e~l~~LkeAGld~~~~~g~E~~~~~v~~~i~~~~~~~~---~~l~~i~~a~~~Gi~~ 204 (351)
T TIGR03700 149 TEEVLDELKEAGLDSMPGGGAEIFAEEVRQQICPEKISAE---RWLEIHRTAHELGLKT 204 (351)
T ss_pred HHHHHHHHHHcCCCcCCCCcccccCHHHHhhcCCCCCCHH---HHHHHHHHHHHcCCCc
Confidence 46679999999987554 222222233334543333 5568899999999986
No 221
>PRK15492 triosephosphate isomerase; Provisional
Probab=22.69 E-value=1.5e+02 Score=32.41 Aligned_cols=48 Identities=15% Similarity=0.105 Sum_probs=38.2
Q ss_pred HHHHhCCCCEEEEccccCccCCcCceeeecCcchHHHHHHHHHHcCcEEEEecC
Q 003095 63 QKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIG 116 (848)
Q Consensus 63 ~k~ka~GlNtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~VilrpG 116 (848)
.++|++|++.|-+ -|..++-.|.-+ +..+.+=++.|.++||.+|+..|
T Consensus 88 ~mLkd~G~~~vii-----GHSERR~~f~Et-d~~v~~Kv~~a~~~gl~pIvCiG 135 (260)
T PRK15492 88 LMLKEIGTQLVMI-----GHSERRHKFGET-DQEENAKVLAALKHDFTTLLCVG 135 (260)
T ss_pred HHHHHcCCCEEEE-----CccccccccCcc-hHHHHHHHHHHHHCCCEEEEEcC
Confidence 4699999999988 566666666533 45667788899999999999987
No 222
>cd06415 GH25_Cpl1-like Cpl-1 lysin (also known as Cpl-9 lysozyme / muramidase) is a bacterial cell wall endolysin encoded by the pneumococcal bacteriophage Cp-1, which cleaves the glycosidic N-acetylmuramoyl-(beta1,4)-N-acetylglucosamine bonds of the pneumococcal glycan chain, thus acting as an enzymatic antimicrobial agent (an enzybiotic) against streptococcal infections. Cpl-1 belongs to the CP family of lysozymes (CPL lysozymes) which includes the Cpl-7 lysin. Cpl-1 has a glycosyl hydrolase family 25 (GH25) catalytic domain with an irregular (beta/alpha)5-beta3 barrel and a C-terminal cell wall-anchoring module formed by six similar choline-binding repeats (ChBr's). The ChBr's facilitate the anchoring of Cpl-1 to the choline-containing teichoic acid of the pneumococcal cell wall. Other members of this domain family have an N-terminal CHAP (cysteine, histidine-dependent amidohydrolases/peptidases) domain similar to that of the firmicute CHAP lysins and associated with endopeptidase
Probab=22.61 E-value=2.9e+02 Score=28.47 Aligned_cols=43 Identities=16% Similarity=0.175 Sum_probs=28.1
Q ss_pred chHHHHHHHHHHcCcEEEEecCcccccccCC-----C--CCCcccCcCCC
Q 003095 95 YDLVKFVKLVAEAGLYAHLRIGPYVCAEWNF-----G--GFPLWLHFIPG 137 (848)
Q Consensus 95 ~dl~~fl~la~~~GL~VilrpGPYicaEw~~-----G--G~P~WL~~~p~ 137 (848)
..+.+|++..++.|.+++|=.+++.....-. . ..|.|+-+++.
T Consensus 108 ~~~~~f~~~v~~~G~~~~iYt~~~~~~~~~~~~~~~~~~~~~lWiA~Y~~ 157 (196)
T cd06415 108 SAILAFMDTIKDAGYKPMLYSYKPLLLNNVDYSQIIAKYPNSLWVAAYPT 157 (196)
T ss_pred HHHHHHHHHHHHhCCCcEEEecHHHHHhccCHHHHHhhCCCCeEEEcCCC
Confidence 3578899999999998888777654333211 1 13578877654
No 223
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=22.49 E-value=1.1e+02 Score=23.53 Aligned_cols=6 Identities=67% Similarity=1.149 Sum_probs=2.7
Q ss_pred EEECCE
Q 003095 34 VVIGGK 39 (848)
Q Consensus 34 f~~dG~ 39 (848)
..|||+
T Consensus 26 ViING~ 31 (36)
T PF08194_consen 26 VIINGK 31 (36)
T ss_pred EEECce
Confidence 344443
No 224
>PTZ00333 triosephosphate isomerase; Provisional
Probab=22.48 E-value=1.6e+02 Score=32.17 Aligned_cols=48 Identities=27% Similarity=0.204 Sum_probs=39.9
Q ss_pred HHHHhCCCCEEEEccccCccCCcCceeeecCcchHHHHHHHHHHcCcEEEEecC
Q 003095 63 QKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIG 116 (848)
Q Consensus 63 ~k~ka~GlNtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~VilrpG 116 (848)
.++|++|++.|-+ -|..++-.|.-+ +..+.+=++.|.++||.+|+..|
T Consensus 83 ~mL~d~G~~~vii-----GHSERR~~f~Et-d~~I~~Kv~~al~~gl~pIlCvG 130 (255)
T PTZ00333 83 EMLKDLGINWTIL-----GHSERRQYFGET-NEIVAQKVKNALENGLKVILCIG 130 (255)
T ss_pred HHHHHcCCCEEEE-----CcccccCcCCCC-cHHHHHHHHHHHHCCCEEEEEcC
Confidence 5789999999998 677677666533 56888999999999999999987
No 225
>PLN02561 triosephosphate isomerase
Probab=22.29 E-value=1.5e+02 Score=32.23 Aligned_cols=49 Identities=14% Similarity=0.009 Sum_probs=38.9
Q ss_pred HHHHHhCCCCEEEEccccCccCCcCceeeecCcchHHHHHHHHHHcCcEEEEecC
Q 003095 62 IQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIG 116 (848)
Q Consensus 62 l~k~ka~GlNtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~VilrpG 116 (848)
..++|++|++.|-+ -|..++..|.-+ +..+.+=++.|.++||.+|+..|
T Consensus 81 ~~mL~d~G~~~vii-----GHSERR~~f~Et-d~~v~~Kv~~al~~gl~pIvCvG 129 (253)
T PLN02561 81 AEMLVNLGIPWVIL-----GHSERRALLGES-NEFVGDKVAYALSQGLKVIACVG 129 (253)
T ss_pred HHHHHHcCCCEEEE-----CcccccCccCCC-hHHHHHHHHHHHHCcCEEEEEcC
Confidence 34689999999988 566666666544 55777788889999999999987
No 226
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=22.14 E-value=1e+02 Score=35.01 Aligned_cols=66 Identities=11% Similarity=0.027 Sum_probs=45.0
Q ss_pred EeeCCCCCcccHHHHHHHHHhCCCCEEEEccccCccCCcCceeeecCcchHHHHHHHHHHcCcEEEEec
Q 003095 47 SIHYPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRI 115 (848)
Q Consensus 47 ~~Hy~R~~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~Vilrp 115 (848)
+-++ |.+...=.-..+.++++|-++|.+.++|.-.++. .-+-.-..+|.++.+.|+++||-+++-+
T Consensus 98 t~~g-r~~~~~~~~sve~a~~~GAdAVk~lv~~~~d~~~--~~~~~~~~~l~rv~~ec~~~giPlllE~ 163 (340)
T PRK12858 98 TAPG-RLPDLLDNWSVRRIKEAGADAVKLLLYYRPDEDD--AINDRKHAFVERVGAECRANDIPFFLEP 163 (340)
T ss_pred CCCC-CCccccccccHHHHHHcCCCEEEEEEEeCCCcch--HHHHHHHHHHHHHHHHHHHcCCceEEEE
Confidence 3444 5544333333677999999999999999954331 0011122389999999999999988853
No 227
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=21.82 E-value=1.3e+02 Score=36.82 Aligned_cols=53 Identities=19% Similarity=0.310 Sum_probs=44.6
Q ss_pred eeCCCCCcccHHHHHHHHHhCCCCEEEEccccCccCCcCceeeecCcchHHHHHHHHHHcCcEEE
Q 003095 48 IHYPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAH 112 (848)
Q Consensus 48 ~Hy~R~~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~Vi 112 (848)
+=|.|.|.+.-+..++++++.|+..|+++...|.. +++...++.|+++|+.+.
T Consensus 89 vg~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd~------------~~~~~ai~~ak~~G~~~~ 141 (593)
T PRK14040 89 LGYRHYADDVVERFVERAVKNGMDVFRVFDAMNDP------------RNLETALKAVRKVGAHAQ 141 (593)
T ss_pred eccccCcHHHHHHHHHHHHhcCCCEEEEeeeCCcH------------HHHHHHHHHHHHcCCeEE
Confidence 45667787888889999999999999998776653 378899999999999864
No 228
>PRK01904 hypothetical protein; Provisional
Probab=21.61 E-value=81 Score=33.50 Aligned_cols=38 Identities=18% Similarity=0.128 Sum_probs=23.6
Q ss_pred CCcchhHHHHHHHHHHHHHhccCCeeEEEec--ceEEECCEEe
Q 003095 1 MASKEILLLVLCWGFVVLATTSFGANVTYDH--RAVVIGGKRR 41 (848)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~--~~f~~dG~p~ 41 (848)
|+++.+++++++++++..+.|+ +++... .-+.+||+..
T Consensus 1 MK~~~~~~~~~~l~~s~~a~A~---tL~lp~~i~lL~vnG~kv 40 (219)
T PRK01904 1 MKLRKAALAVATLLTSTASFAG---MVTTSSNIDFLAIDGQKA 40 (219)
T ss_pred CchhHHHHHHHHHHHhHHhhHh---eeeCCCceEEEEECCEEC
Confidence 8888877777766655533332 344433 4567799883
No 229
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=21.35 E-value=4.7e+02 Score=30.45 Aligned_cols=64 Identities=14% Similarity=0.149 Sum_probs=38.2
Q ss_pred EeEEEEEEeeCCCCCcccH----HHHHHHHHhCCCCEEEEccccCccCCcCceeeecCcchHHHHHHHHHHcCcEEEEec
Q 003095 40 RRVLISGSIHYPRSTPEMW----PDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRI 115 (848)
Q Consensus 40 p~~~~sG~~Hy~R~~~~~W----~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~Vilrp 115 (848)
.+++++|.+.-...|+... .+.+++++..++.+ |+. +|.-|+.. .+....++.++.|++|+-.+
T Consensus 41 D~viIaGDifD~~~p~~~a~~~~~~~l~~L~~~~~~v---~~I-------~GNHD~~~--~l~~~~~~l~~~gi~vl~~~ 108 (407)
T PRK10966 41 DAIIVAGDIFDTGSPPSYARELYNRFVVNLQQTGCQL---VVL-------AGNHDSVA--TLNESRDLLAFLNTTVIASA 108 (407)
T ss_pred CEEEECCccccCCCCcHHHHHHHHHHHHHHHhcCCcE---EEE-------cCCCCChh--hhhhHHHHHHHCCcEEEecc
Confidence 3578899886444444433 34456777777653 433 34444332 25556677789999988543
No 230
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=21.17 E-value=1.7e+02 Score=34.50 Aligned_cols=73 Identities=18% Similarity=0.288 Sum_probs=52.0
Q ss_pred ecceEEECCEEeEEEEEEeeCCCCCcccHHHHHHHHHhCCCCEEEEccc----cCccC---C------------------
Q 003095 30 DHRAVVIGGKRRVLISGSIHYPRSTPEMWPDLIQKSKDGGLDVIETYVF----WNLHE---P------------------ 84 (848)
Q Consensus 30 d~~~f~~dG~p~~~~sG~~Hy~R~~~~~W~d~l~k~ka~GlNtV~~yv~----Wn~hE---p------------------ 84 (848)
.-++|+||=-| |++ +.+.-++.|+.|-..++|....++- |-+-- |
T Consensus 6 ~~RGlmLDvaR--------~f~--~~~~ik~~Id~ma~~K~N~lHlHLtDdqgwriei~~~P~Lt~~ga~r~~~~~~~~~ 75 (445)
T cd06569 6 EYRGMHLDVAR--------NFH--SKETVLKLLDQMAAYKLNKLHLHLTDDEGWRLEIPGLPELTEVGAKRCHDLSETTC 75 (445)
T ss_pred cccceeeeccC--------CCC--CHHHHHHHHHHHHHhCCceEEEEeecCCCcceeccCCchhhhcccccccccccccc
Confidence 34566666444 544 7889999999999999999998873 53211 0
Q ss_pred --------------cCceeeecCcchHHHHHHHHHHcCcEEEEec
Q 003095 85 --------------VRNQYNFEGRYDLVKFVKLVAEAGLYAHLRI 115 (848)
Q Consensus 85 --------------~~G~ydF~g~~dl~~fl~la~~~GL~Vilrp 115 (848)
..|.|. ..|+.++++.|++.|+.||.-+
T Consensus 76 ~~~~~~~~~~~~~~~~g~YT---~~di~eiv~yA~~rgI~VIPEI 117 (445)
T cd06569 76 LLPQLGSGPDTNNSGSGYYS---RADYIEILKYAKARHIEVIPEI 117 (445)
T ss_pred cccccccCcccCcccCCccC---HHHHHHHHHHHHHcCCEEEEcc
Confidence 012222 3499999999999999999654
No 231
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=20.90 E-value=76 Score=35.76 Aligned_cols=49 Identities=12% Similarity=0.266 Sum_probs=31.4
Q ss_pred HHHHHHHHhCCCCEEEEccccCcc------CCcCceeeecCcchHHHHHHHHHHcCcEE
Q 003095 59 PDLIQKSKDGGLDVIETYVFWNLH------EPVRNQYNFEGRYDLVKFVKLVAEAGLYA 111 (848)
Q Consensus 59 ~d~l~k~ka~GlNtV~~yv~Wn~h------Ep~~G~ydF~g~~dl~~fl~la~~~GL~V 111 (848)
++.|++||++|++.+-. .-.... .-.|+...++ +..+.++.|+++||.|
T Consensus 141 ~e~l~~LkeAGl~~i~~-~~~E~~~~~v~~~i~~~~~~~~---~~~~~i~~a~~~Gi~v 195 (343)
T TIGR03551 141 EEALKRLKEAGLDSMPG-TAAEILDDEVRKVICPDKLSTA---EWIEIIKTAHKLGIPT 195 (343)
T ss_pred HHHHHHHHHhCcccccC-cchhhcCHHHHHhcCCCCCCHH---HHHHHHHHHHHcCCcc
Confidence 67899999999998740 001111 1123333333 5678999999999976
No 232
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=20.62 E-value=1.2e+02 Score=32.64 Aligned_cols=81 Identities=23% Similarity=0.203 Sum_probs=57.8
Q ss_pred CEEeEEEEEEeeCCC-CCcccHHHHHHHHHhCCCCEEEEccccCccCC-----------cCceeeecCcchHHHHHHHHH
Q 003095 38 GKRRVLISGSIHYPR-STPEMWPDLIQKSKDGGLDVIETYVFWNLHEP-----------VRNQYNFEGRYDLVKFVKLVA 105 (848)
Q Consensus 38 G~p~~~~sG~~Hy~R-~~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp-----------~~G~ydF~g~~dl~~fl~la~ 105 (848)
++-+.+..|+-+..| |+.+.|.+.++++++.|++.|-+. .-.|. .+...++.|..+|.+++.+.+
T Consensus 121 ~~~i~i~~~~~~~~k~w~~~~~~~l~~~l~~~~~~ivl~g---~~~e~~~~~~i~~~~~~~~~~~~~~~~~l~e~~~li~ 197 (279)
T cd03789 121 KPVVVLPPGASGPAKRWPAERFAALADRLLARGARVVLTG---GPAERELAEEIAAALGGPRVVNLAGKTSLRELAALLA 197 (279)
T ss_pred CCEEEECCCCCCccccCCHHHHHHHHHHHHHCCCEEEEEe---chhhHHHHHHHHHhcCCCccccCcCCCCHHHHHHHHH
Confidence 334445555555555 799999999999998888776443 22221 245578888889999999999
Q ss_pred HcCcEEEEecCccccc
Q 003095 106 EAGLYAHLRIGPYVCA 121 (848)
Q Consensus 106 ~~GL~VilrpGPYica 121 (848)
+..+.|-...||.--|
T Consensus 198 ~~~l~I~~Dsg~~HlA 213 (279)
T cd03789 198 RADLVVTNDSGPMHLA 213 (279)
T ss_pred hCCEEEeeCCHHHHHH
Confidence 9999888877775443
No 233
>PF08306 Glyco_hydro_98M: Glycosyl hydrolase family 98; InterPro: IPR013191 This domain is the putative catalytic domain of glycosyl hydrolase family 98 proteins.; PDB: 2VNO_B 2VNR_A 2VNG_B 2WMH_A 2WMG_A 2WMF_A 2WMK_A 2WMJ_B 2WMI_B.
Probab=20.47 E-value=64 Score=36.12 Aligned_cols=91 Identities=20% Similarity=0.402 Sum_probs=52.2
Q ss_pred EEEEEEee------CCCCCcccHHHHHHHHHhC-CCCEEEEccccCccCCcCceeeecCcchHHHHHHHHHHcCcEEEEe
Q 003095 42 VLISGSIH------YPRSTPEMWPDLIQKSKDG-GLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLR 114 (848)
Q Consensus 42 ~~~sG~~H------y~R~~~~~W~d~l~k~ka~-GlNtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~Vilr 114 (848)
++.||. | +.+++.+-|++-+++--.. |+|-++-| |.+-++.. ....++|++|++.|-+.|--
T Consensus 104 q~~sgG-~~~~y~~~~~~~~~~~~e~fr~Ypnf~G~n~~Eqf--Wgf~~~~~--------~~~A~lLkl~akYGGy~iWs 172 (324)
T PF08306_consen 104 QPSSGG-HFPDYSAYHDIENTWYEEFFRDYPNFQGFNYAEQF--WGFDDPGS--------EHFADLLKLCAKYGGYFIWS 172 (324)
T ss_dssp EEEECC-G-TTT-GCCG--HHHHHHHHHH-TTEEEEEEE--T--TS--TTHH--------HHHHHHHHHHHHTT-EEEEE
T ss_pred EecCCC-CCCCccccccCChHHHHHHHHhCccccccccHhhh--eecCCchh--------HHHHHHHHHHHHhCceEEee
Confidence 456777 8 3445666677777777665 99988885 55555543 37889999999999988422
Q ss_pred cCcccccccCCC-CCCcccCcCCCeeeecCChhhHHHHHHHHHH
Q 003095 115 IGPYVCAEWNFG-GFPLWLHFIPGIQFRTDNEPFKAEMQRFTAK 157 (848)
Q Consensus 115 pGPYicaEw~~G-G~P~WL~~~p~~~~Rt~d~~y~~~v~~~~~~ 157 (848)
+-.++ .+-.|+-. ..++.|++++++|-+.
T Consensus 173 -------~~~N~~am~k~~~~-------~~~~~~~~A~~~y~en 202 (324)
T PF08306_consen 173 -------DQNNPIAMEKWFGE-------QRNPEFKDACEKYSEN 202 (324)
T ss_dssp ----------GGGHHHHHCCC-------CCSHHHHHHHHHHGGG
T ss_pred -------cCCChHHHHHhhhh-------ccCHHHHHHHHHhhhh
Confidence 22121 12234431 1578888888776543
No 234
>KOG0622 consensus Ornithine decarboxylase [Amino acid transport and metabolism]
Probab=20.29 E-value=1.3e+02 Score=34.98 Aligned_cols=67 Identities=24% Similarity=0.277 Sum_probs=45.8
Q ss_pred CCcccHHHHHHHHHhCCCCEEEEccccCccCCcCceeeecCcchHHHHHHHHHHcCcEE-EEecCcccccccCCCCCC
Q 003095 53 STPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYA-HLRIGPYVCAEWNFGGFP 129 (848)
Q Consensus 53 ~~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~V-ilrpGPYicaEw~~GG~P 129 (848)
...+.-+..|+.+|+.|+|.|-+++.=.---+.+-.|.= -..|-...++++.+.|..+ +|-.| ||+|
T Consensus 190 ~~~~~~~~lLd~ak~l~lnvvGvsfHvGSgc~d~~~y~~-Ai~dAr~vfd~g~e~Gf~m~~LdiG---------GGf~ 257 (448)
T KOG0622|consen 190 CSLDNCRHLLDMAKELELNVVGVSFHVGSGCTDLQAYRD-AISDARNVFDMGAELGFEMDILDIG---------GGFP 257 (448)
T ss_pred CCHHHHHHHHHHHHHcCceEEEEEEEecCCCCCHHHHHH-HHHHHHHHHHHHHhcCceEEEeecC---------CCCC
Confidence 456677889999999999999997653322222222221 1246666778888999984 68776 8886
No 235
>PRK14566 triosephosphate isomerase; Provisional
Probab=20.23 E-value=1.8e+02 Score=31.84 Aligned_cols=48 Identities=23% Similarity=0.211 Sum_probs=37.8
Q ss_pred HHHHhCCCCEEEEccccCccCCcCceeeecCcchHHHHHHHHHHcCcEEEEecC
Q 003095 63 QKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIG 116 (848)
Q Consensus 63 ~k~ka~GlNtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~VilrpG 116 (848)
.++|++|++.|-+ -|..++..|.-+ +..+.+=++.|.++||.+|+..|
T Consensus 89 ~mL~d~G~~~vii-----GHSERR~~f~Et-d~~v~~Kv~~al~~gl~pIvCvG 136 (260)
T PRK14566 89 QMLKDAGCRYVII-----GHSERRRMYGET-SNIVAEKFAAAQKHGLTPILCVG 136 (260)
T ss_pred HHHHHcCCCEEEE-----CcccccCCCCcC-HHHHHHHHHHHHHCCCEEEEEcC
Confidence 4699999999988 566666666533 45667788899999999999987
No 236
>KOG0805 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=20.08 E-value=2.8e+02 Score=30.24 Aligned_cols=53 Identities=26% Similarity=0.380 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHcCcEEEEecCcccccccCCCCCCcccCcCCCeeeecCChhhHHHHHHHHH
Q 003095 96 DLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLHFIPGIQFRTDNEPFKAEMQRFTA 156 (848)
Q Consensus 96 dl~~fl~la~~~GL~VilrpGPYicaEw~~GG~P~WL~~~p~~~~Rt~d~~y~~~v~~~~~ 156 (848)
...+++..|++.|-..+|-| |--.||+|.|..- ++.+-+.++.=+++.++|+.
T Consensus 38 K~~~~~~Eaa~~Ga~LV~fP------EAfiGGYPrg~~F--g~~~G~r~~eGR~ef~kY~a 90 (337)
T KOG0805|consen 38 KAEKYIVEAASKGAELVLFP------EAFIGGYPRGFRF--GLAVGVRNEEGRDEFRKYHA 90 (337)
T ss_pred HHHHHHHHHhcCCceEEEee------hHhccCCCCccee--eEEEeecchhhhHHHHHHHH
Confidence 56788999999999999988 5556999999874 23333334444455555543
Done!