Query 003096
Match_columns 848
No_of_seqs 233 out of 440
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 13:10:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003096.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003096hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fo9_A E3 SUMO-protein ligase 100.0 2.1E-53 7.3E-58 458.5 22.3 282 140-481 13-323 (360)
2 3i2d_A E3 SUMO-protein ligase 100.0 3.1E-48 1.1E-52 419.5 22.1 259 152-467 67-341 (371)
3 2rno_A Putative DNA-binding pr 99.8 3.6E-21 1.2E-25 174.3 7.5 85 3-88 8-109 (110)
4 1v66_A Protein inhibitor of ac 99.7 1.7E-18 6E-23 145.8 5.6 60 3-62 2-64 (65)
5 2rsd_A E3 SUMO-protein ligase 98.9 7.5E-10 2.6E-14 94.0 3.6 65 92-157 4-68 (68)
6 1wew_A DNA-binding family prot 98.7 8.8E-09 3E-13 89.6 4.2 69 90-158 8-76 (78)
7 2rnn_A E3 SUMO-protein ligase 98.3 1.1E-06 3.9E-11 82.0 6.7 47 3-49 28-74 (114)
8 3o7a_A PHD finger protein 13 v 97.8 7.7E-06 2.6E-10 66.0 2.1 47 98-152 4-50 (52)
9 3o70_A PHD finger protein 13; 97.8 1.3E-05 4.5E-10 68.4 3.5 52 95-154 16-67 (68)
10 2lv9_A Histone-lysine N-methyl 97.8 2.1E-05 7.1E-10 71.3 4.9 53 95-155 25-77 (98)
11 2do1_A Nuclear protein HCC-1; 97.7 1.9E-05 6.5E-10 65.4 3.5 38 12-49 10-47 (55)
12 1zrj_A E1B-55KDA-associated pr 97.6 5E-05 1.7E-09 61.8 4.8 38 12-49 10-47 (50)
13 1wee_A PHD finger family prote 97.6 2.4E-05 8.4E-10 66.8 3.0 53 96-155 14-67 (72)
14 1wem_A Death associated transc 97.5 6.7E-06 2.3E-10 70.8 -1.6 57 97-155 15-71 (76)
15 1h1j_S THO1 protein; SAP domai 97.5 7.6E-05 2.6E-09 60.9 3.9 37 12-48 5-41 (51)
16 2kvu_A MKL/myocardin-like prot 97.5 7.4E-05 2.5E-09 65.4 3.8 39 11-49 25-63 (75)
17 3kqi_A GRC5, PHD finger protei 97.4 3E-05 1E-09 66.8 1.0 54 96-155 8-62 (75)
18 1wep_A PHF8; structural genomi 97.4 6.1E-05 2.1E-09 65.4 2.3 54 96-155 10-64 (79)
19 1we9_A PHD finger family prote 97.2 0.00018 6.1E-09 59.8 3.6 53 97-155 5-59 (64)
20 1jjr_A KU70, thyroid autoantig 97.1 0.00025 8.7E-09 69.3 4.1 40 10-49 59-98 (151)
21 1weu_A Inhibitor of growth fam 97.0 0.00078 2.7E-08 60.8 5.6 55 93-155 31-86 (91)
22 3htk_C E3 SUMO-protein ligase 96.7 0.0006 2.1E-08 71.9 2.8 67 334-435 170-245 (267)
23 1wen_A Inhibitor of growth fam 96.1 0.0053 1.8E-07 52.8 4.8 53 95-155 13-66 (71)
24 2g6q_A Inhibitor of growth pro 96.1 0.0017 5.7E-08 54.5 1.6 53 95-155 8-61 (62)
25 3kv5_D JMJC domain-containing 96.1 0.00098 3.3E-08 75.4 0.2 54 96-155 35-89 (488)
26 3c6w_A P28ING5, inhibitor of g 96.1 0.0017 5.9E-08 53.9 1.5 53 95-155 6-59 (59)
27 3kv4_A PHD finger protein 8; e 95.9 0.00077 2.6E-08 75.6 -1.7 53 97-155 4-57 (447)
28 2k16_A Transcription initiatio 95.9 0.0029 1E-07 54.0 2.2 51 97-154 17-68 (75)
29 1x4i_A Inhibitor of growth pro 95.8 0.0034 1.2E-07 53.8 2.1 52 95-154 3-55 (70)
30 2ri7_A Nucleosome-remodeling f 95.8 0.0012 4.1E-08 64.2 -1.0 54 96-155 6-60 (174)
31 2vnf_A ING 4, P29ING4, inhibit 95.7 0.0031 1E-07 52.5 1.4 53 95-155 7-60 (60)
32 2kgg_A Histone demethylase jar 95.3 0.0031 1.1E-07 50.8 -0.0 46 101-152 6-52 (52)
33 2jmi_A Protein YNG1, ING1 homo 94.5 0.019 6.6E-07 51.7 3.1 50 95-152 23-74 (90)
34 2jx3_A Protein DEK; alpha heli 92.6 0.12 4E-06 49.5 5.0 45 6-50 66-110 (131)
35 3lqh_A Histone-lysine N-methyl 92.6 0.019 6.4E-07 57.6 -0.5 59 100-161 4-69 (183)
36 3pur_A Lysine-specific demethy 91.2 0.052 1.8E-06 62.1 1.0 40 109-154 55-94 (528)
37 2xb1_A Pygopus homolog 2, B-ce 90.9 0.038 1.3E-06 50.6 -0.4 53 102-155 8-62 (105)
38 2vpb_A Hpygo1, pygopus homolog 85.3 0.089 3E-06 44.5 -1.7 50 102-152 13-64 (65)
39 2ku3_A Bromodomain-containing 80.7 0.44 1.5E-05 40.9 0.8 49 101-158 20-70 (71)
40 2ku7_A MLL1 PHD3-CYP33 RRM chi 79.8 0.23 7.8E-06 44.9 -1.3 42 111-154 1-44 (140)
41 3rsn_A SET1/ASH2 histone methy 79.3 1.1 3.7E-05 44.9 3.3 48 98-152 5-57 (177)
42 1f62_A Transcription factor WS 79.1 1.2 4.1E-05 35.1 2.8 45 102-153 5-49 (51)
43 2l43_A N-teminal domain from h 77.7 0.57 1.9E-05 41.6 0.6 53 100-161 28-82 (88)
44 1kcf_A Hypothetical 30.2 KD pr 72.1 2.5 8.4E-05 44.4 3.8 33 13-45 2-34 (258)
45 2do5_A Splicing factor 3B subu 69.6 4.5 0.00015 33.3 3.9 32 16-47 12-43 (58)
46 2l5u_A Chromodomain-helicase-D 67.8 4 0.00014 33.7 3.4 47 98-154 11-58 (61)
47 3asl_A E3 ubiquitin-protein li 64.4 3.8 0.00013 34.9 2.7 47 102-154 23-69 (70)
48 2e6r_A Jumonji/ARID domain-con 63.5 2.5 8.6E-05 37.7 1.5 48 100-154 18-66 (92)
49 2e6s_A E3 ubiquitin-protein li 62.3 6.1 0.00021 34.3 3.7 45 102-152 31-75 (77)
50 3ask_A E3 ubiquitin-protein li 58.8 6.5 0.00022 40.8 3.7 46 102-153 179-224 (226)
51 1a62_A RHO; transcription term 58.3 10 0.00036 35.9 4.8 34 12-45 6-41 (130)
52 2riq_A Poly [ADP-ribose] polym 57.4 16 0.00053 36.1 6.0 43 4-46 30-73 (160)
53 3shb_A E3 ubiquitin-protein li 54.2 7.1 0.00024 34.0 2.7 45 102-152 31-75 (77)
54 1xwh_A Autoimmune regulator; P 52.3 8.5 0.00029 32.1 2.8 44 102-155 13-56 (66)
55 1zbh_A 3'-5' exonuclease ERI1; 51.6 16 0.00054 38.3 5.3 47 3-49 17-63 (299)
56 2yt5_A Metal-response element- 51.5 5 0.00017 33.0 1.3 50 102-155 11-62 (66)
57 2ysm_A Myeloid/lymphoid or mix 50.7 11 0.00036 34.1 3.4 47 102-155 59-105 (111)
58 2puy_A PHD finger protein 21A; 49.7 12 0.0004 30.5 3.2 43 102-154 10-52 (60)
59 1mm2_A MI2-beta; PHD, zinc fin 49.7 17 0.0006 29.8 4.2 43 102-154 14-56 (61)
60 2lri_C Autoimmune regulator; Z 47.4 18 0.00062 30.4 4.1 45 100-154 14-59 (66)
61 2yql_A PHD finger protein 21A; 47.0 14 0.00048 29.7 3.2 41 102-152 14-54 (56)
62 4bbq_A Lysine-specific demethy 41.6 14 0.00046 33.5 2.6 42 110-154 73-114 (117)
63 2kwj_A Zinc finger protein DPF 41.0 15 0.00051 33.6 2.8 46 102-154 63-108 (114)
64 1wev_A Riken cDNA 1110020M19; 39.5 12 0.0004 33.1 1.8 51 102-155 21-73 (88)
65 1y02_A CARP2, FYVE-ring finger 38.3 46 0.0016 31.2 5.7 38 9-46 73-112 (120)
66 4gne_A Histone-lysine N-methyl 38.1 22 0.00076 32.7 3.4 38 108-152 23-60 (107)
67 3o36_A Transcription intermedi 38.0 28 0.00097 33.9 4.4 40 109-155 13-52 (184)
68 3u5n_A E3 ubiquitin-protein li 34.0 20 0.00069 35.7 2.7 40 109-155 16-55 (207)
69 2kqs_B Death domain-associated 29.6 17 0.00059 26.1 0.9 14 589-602 11-24 (26)
70 3v43_A Histone acetyltransfera 28.5 50 0.0017 30.0 4.1 46 102-154 66-112 (112)
71 2ro1_A Transcription intermedi 24.6 54 0.0019 32.4 3.9 39 109-154 11-49 (189)
72 1fp0_A KAP-1 corepressor; PHD 22.2 86 0.0029 28.1 4.3 39 109-154 34-72 (88)
No 1
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=100.00 E-value=2.1e-53 Score=458.51 Aligned_cols=282 Identities=25% Similarity=0.343 Sum_probs=207.6
Q ss_pred cCCCCcccccccccccCCchhhhhhhccCceEeeeccCCCCCCCCCceeEEEEEeCHhhHHhhcC---------CCcE--
Q 003096 140 RLLPPLFFCETCRIKRADPFWITVAHLVSPMKLVASNIPTDGTNPLQKAEAAFHLTKAHSDLLQN---------TEYD-- 208 (848)
Q Consensus 140 pvhPdvFyCe~CRLKr~dPFy~~i~~Ll~P~~L~~s~i~~dG~~~~Q~~e~~F~LT~~q~~lL~~---------~~y~-- 208 (848)
++||++ +||+ +|||+++++|++|+.|.+++ ++++|+..+.|+||++|+..+.. .+|+
T Consensus 13 ~~~~~~------~~k~-lPFy~v~~~l~~Pt~L~~~~-----~~~~~~~~f~f~lt~~q~~~i~~~~~~~~~~~~~~~vq 80 (360)
T 4fo9_A 13 NLYFQG------QLKN-LPFYDVLDVLIKPTSLVQSS-----IQRFQEKFFIFALTPQQVREICISRDFLPGGRRDYTVQ 80 (360)
T ss_dssp ----CC------CBCC-CTTEEEEEEEEEEEECCCCS-----SCSEEEEEEEECCCHHHHHHHHTCEEECTTSCEEESEE
T ss_pred ccCCCc------eecC-CCchHhHhhhcCceeccccc-----CcccccceeEEEcCHHHHHHHhhccccccccccceeEE
Confidence 689999 8995 99999999999999998754 35899999999999999987753 3454
Q ss_pred EEEEEEecCCCccccccCCCceEEEEcCeEeeeccC-CCcccCC-CCCCCCCCc-ccccccCc---ccEEEEEEe-e-cc
Q 003096 209 VQAWCILLNDKVSFRMQWPLHAELQVNGLLVRTVNR-PGTQLLG-SNGRDDGAL-ITLYIGEG---VNQISLSGC-D-IR 280 (848)
Q Consensus 209 vQlrCi~l~d~v~~~~~wP~~~el~VNg~~v~~~~R-Pg~~~~g-~ngR~d~pi-IT~~i~~g---~N~I~is~~-d-~r 280 (848)
||+|-+.+++.+++++.||.+++|+|||+.|+.... |. ...| +++|.++|+ ||.+++.+ .|+|+|+|. + .+
T Consensus 81 vqlRfC~~~~~~~q~~~fP~~i~lkVNg~~v~lp~~~p~-~k~g~~~kr~~~PidIT~~lr~~~~~~N~I~vt~~~~~~~ 159 (360)
T 4fo9_A 81 VQLRLCLAETSCPQEDNYPNSLCIKVNGKLFPLPGYAPP-PKNGIEQKRPGRPLNITSLVRLSSAVPNQISISWASEIGK 159 (360)
T ss_dssp EEEEEEEC-C-CCBCCBCCTTCEEEETTEEECCCC---------CCCCCBCCCEECGGGSCCCSSSCEEEEEEEECBTTB
T ss_pred EEEEEEEccCCCcccccCCCceEEEECCEEccCCCCCCC-cccccccCCCCCceechhhhccCCCCCcEEEEEEecCCCc
Confidence 455534447889999999999999999999995421 21 2223 345677888 99999988 599999996 3 68
Q ss_pred eEEEEEEEEeecCHHHHHHhcccCCCCCChHHHHHHHHHhhCCccCCCCCCCCCceeeeeceEEEecCCCCccccccccc
Q 003096 281 NFCFGVRLVKRQTVAQVLSLVPKETAGEVFEDALTRVRRCFGGVATGNEDGDSDLEIIADSIIVNLRCPKVFSEENSDVL 360 (848)
Q Consensus 281 ~y~~~V~LVk~~t~eqll~~I~~~~~g~~~edal~rIkr~l~~~~~~n~d~D~DlEIv~~s~~VSL~CP~~~~~~~~~~~ 360 (848)
.|+|+|||||++|+++|+++|+++ .....++++++||+.+.. |+|+||++++++|||+||
T Consensus 160 ~y~l~V~lV~~~s~~~Llq~l~~k-~~~~~e~t~~~Ik~~l~~--------d~DddI~~~~~~vSL~CP----------- 219 (360)
T 4fo9_A 160 NYSMSVYLVRQLTSAMLLQRLKMK-GIRNPDHSRALIKEKLTA--------DPDSEIATTSLRVSLMCP----------- 219 (360)
T ss_dssp CEEEEEEEEEECCHHHHHHHHHTC--CBCHHHHHHHHHHHHC-----------------CCEEEESBCT-----------
T ss_pred eEEEEEEEEEeCCHHHHHHHHHhc-CCCCHHHHHHHHHHHhcc--------CCccceeeeeeEEeeeCC-----------
Confidence 999999999999999999999873 345677899999998852 234479999999999999
Q ss_pred ccCcCcccccchhhccccccccccceeccccccCcCcccccCHHHHHHHhcCCCCceee-------cchhhhhhhHHHHH
Q 003096 361 LFGIPFDCTFHWLFLTCNWQMSGSRIRVAGRFKPCVHTGCFDLETFVELNQRTRKASYS-------FILLFLSMFRIFKL 433 (848)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~lS~~RI~vP~Rg~~C~HlQCFDLetFL~mNer~~tW~C~-------~~~L~l~ID~yf~~ 433 (848)
||++||++||||+.|.|+|||||++||+||++.++|+|| +++|+ ||+||++
T Consensus 220 --------------------lS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~--ID~~~~~ 277 (360)
T 4fo9_A 220 --------------------LGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLI--LDGLFME 277 (360)
T ss_dssp --------------------TTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEE--EBHHHHH
T ss_pred --------------------CccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeE--EcHHHHH
Confidence 999999999999999999999999999999999999985 66788 9999999
Q ss_pred HHhhhhhcCCCCeeEEEEccCCcEEE-eecCCC--CCCCCccCCCCccccc
Q 003096 434 IKVGKMRNFADDLTEIEVKHDGSWRV-KCKGEN--NNLAEWHSPDGSTYAA 481 (848)
Q Consensus 434 IL~s~l~~~~~dv~eIev~~DGSW~v-~~~~E~--~~~~~w~~pdg~~~~~ 481 (848)
|| +++ +|+++|+|++||+|++ ..++|. ....+|...||...++
T Consensus 278 IL----~~~-~~v~~I~v~~DGsW~p~~~k~e~~~~~~~~~~~~~~~~~~~ 323 (360)
T 4fo9_A 278 IL----NDC-SDVDEIKFQEDGSWCPMRPKKEAMKVSSQPCTKIESSSVLS 323 (360)
T ss_dssp HH----TTC-SSCCEEEECC-CCEEC-------------------------
T ss_pred HH----HhC-CCCCEEEECCCCceecCCCCcccccccCCCCCCcccccccc
Confidence 99 455 4999999999999994 456664 4457777788766554
No 2
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-48 Score=419.45 Aligned_cols=259 Identities=20% Similarity=0.318 Sum_probs=208.0
Q ss_pred ccccCCchhhhhhhccCceE-eeeccCCCCCCCCCceeEEEEEeCHhhHHhhc--CCCcEEEEEEEecCCC---cccccc
Q 003096 152 RIKRADPFWITVAHLVSPMK-LVASNIPTDGTNPLQKAEAAFHLTKAHSDLLQ--NTEYDVQAWCILLNDK---VSFRMQ 225 (848)
Q Consensus 152 RLKr~dPFy~~i~~Ll~P~~-L~~s~i~~dG~~~~Q~~e~~F~LT~~q~~lL~--~~~y~vQlrCi~l~d~---v~~~~~ 225 (848)
+|| .+|||+.+. +|..+. .... .. ....+.+.|.||++++++|+ +++|+|+|||+.+++- ..++++
T Consensus 67 ~Fk-~SPFY~i~~-~i~~~~~~~~~---~~---~R~~~~~~F~Ls~~~~~~L~~~~~~~rl~L~C~~~~~~~~~~~~~i~ 138 (371)
T 3i2d_A 67 HFK-ESPFYKIQR-LIPELVMNVEV---TG---GRGMCSAKFKLSKADYNLLSNPNSKHRLYLFSGMINPLGSRGNEPIQ 138 (371)
T ss_dssp CBC-CBTTEEEEE-EEEEEEEEECC---EE---EEEEEEEEECCCHHHHHHHHSTTCCEEEEEEEEESSCSSCGGGBCCC
T ss_pred eec-CCCCceeee-ecCCccccccc---cC---CCCEEEEEEEECHHHHHHHhcCCCCceEEEEeeecCCCCCCCCcCee
Confidence 588 599998554 443332 2211 11 23467889999999999998 4789999999998752 245789
Q ss_pred CCCceEEEEcCeEeeeccCCCcccCCCCCCCCCCcccccccCc--ccEEEEEEe-ecceEEEEEEEEeecCHHHHHHhcc
Q 003096 226 WPLHAELQVNGLLVRTVNRPGTQLLGSNGRDDGALITLYIGEG--VNQISLSGC-DIRNFCFGVRLVKRQTVAQVLSLVP 302 (848)
Q Consensus 226 wP~~~el~VNg~~v~~~~RPg~~~~g~ngR~d~piIT~~i~~g--~N~I~is~~-d~r~y~~~V~LVk~~t~eqll~~I~ 302 (848)
||..++|+|||..|+...|+ +++++|+..+..||.+++.+ .|+|+|+|. +.+.|+|+|||||++++++|++.|.
T Consensus 139 fP~~~eI~VNg~~vk~n~rG---lKnk~Gt~~PvDIT~~lr~~~~~N~I~i~y~~~~~~Y~i~v~lVk~~s~e~Ll~~I~ 215 (371)
T 3i2d_A 139 FPFPNELRCNNVQIKDNIRG---FKSKPGTAKPADLTPHLKPYTQQNNVELIYAFTTKEYKLFGYIVEMITPEQLLEKVL 215 (371)
T ss_dssp CCSSEEEEETTEECCSCCSS---CTTSCGGGSCEECGGGCCCSSSCEEEEEEEEEESSCEEEEEEEEEECCHHHHHHHHH
T ss_pred cCCceEEEECCEEecccccc---CCCCCCCcCCCCchhhhccCCCCcEEEEEEecccceEEEEEEEEEecCHHHHHHHHH
Confidence 99999999999999975564 34677875544499999986 899999994 7889999999999999999999998
Q ss_pred cCCCCCChHHHHHHHHHhhCCccCCCCCCCCCceeeeeceEEEecCCCCcccccccccccCcCcccccchhhcccccccc
Q 003096 303 KETAGEVFEDALTRVRRCFGGVATGNEDGDSDLEIIADSIIVNLRCPKVFSEENSDVLLFGIPFDCTFHWLFLTCNWQMS 382 (848)
Q Consensus 303 ~~~~g~~~edal~rIkr~l~~~~~~n~d~D~DlEIv~~s~~VSL~CP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS 382 (848)
++ ..+..++++++||+++.. | +|+||+++++.|||+|| ||
T Consensus 216 ~~-~~i~~e~tl~~Ik~~ls~------d--~DdDIv~~s~~vSL~CP-------------------------------lS 255 (371)
T 3i2d_A 216 QH-PKIIKQATLLYLKKTLRE------D--EEMGLTTTSTIMSLQCP-------------------------------IS 255 (371)
T ss_dssp TS-CCBCHHHHHHHHHHHHHS------C--C------CEEEEESBCT-------------------------------TT
T ss_pred hc-CCCCHHHHHHHHHHHhcc------C--CCCceeeeeeEEeecCC-------------------------------Cc
Confidence 75 346778899999998852 2 33468899999999999 99
Q ss_pred ccceeccccccCcCcccccCHHHHHHHhcCCCCceee-------cchhhhhhhHHHHHHHhhhhhcCCCCeeEEEEccCC
Q 003096 383 GSRIRVAGRFKPCVHTGCFDLETFVELNQRTRKASYS-------FILLFLSMFRIFKLIKVGKMRNFADDLTEIEVKHDG 455 (848)
Q Consensus 383 ~~RI~vP~Rg~~C~HlQCFDLetFL~mNer~~tW~C~-------~~~L~l~ID~yf~~IL~s~l~~~~~dv~eIev~~DG 455 (848)
++||++|+||+.|.|+|||||++||+||++.++|+|| +++|+ ||+||++|| +++++|+++|+|++||
T Consensus 256 ~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~--ID~~~~~IL----~~~~~dve~V~v~~DG 329 (371)
T 3i2d_A 256 YTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLA--ISEFVDDIL----QNCQKNVEQVELTSDG 329 (371)
T ss_dssp SSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEE--EBHHHHHHH----TTSCTTCCEEEEETTS
T ss_pred cccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHee--EcHHHHHHH----HhccCCccEEEECCCC
Confidence 9999999999999999999999999999999999995 56788 999999999 6778999999999999
Q ss_pred cEEEeecCCCCC
Q 003096 456 SWRVKCKGENNN 467 (848)
Q Consensus 456 SW~v~~~~E~~~ 467 (848)
+|+++.++++.+
T Consensus 330 sW~p~~e~~~d~ 341 (371)
T 3i2d_A 330 KWTAILEDDDDS 341 (371)
T ss_dssp CEEECC------
T ss_pred CEEeccCCcCCC
Confidence 999988776544
No 3
>2rno_A Putative DNA-binding protein; SUMO ligase, sumoylation, metal-BI zinc-finger, ligase; NMR {Oryza sativa subsp}
Probab=99.83 E-value=3.6e-21 Score=174.35 Aligned_cols=85 Identities=56% Similarity=0.792 Sum_probs=77.9
Q ss_pred hhHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCHHHHHHHHHHhcCchh-----------------HHHHHHHHHHhhccc
Q 003096 3 IHVLNLQGKLVNFRMKELKDVLTKLGLPKQGKKQDLVDRIFHQLSDEG-----------------VARIIDDTYRKMQIS 65 (848)
Q Consensus 3 ~~~~~lk~ml~sFRV~ELk~lL~~lGl~KsGrKqEL~dRil~lL~~~~-----------------v~~~I~elYrk~q~~ 65 (848)
.-+..||.+|.+|||+|||++|+.|||+|+||||||+|||+.+|.+++ |+++|+|+|||||++
T Consensus 8 dl~~~Ck~kl~~frikelkdvl~~lgl~kqgkKqdL~Dril~llsd~q~~~~~~~~~K~~v~kE~vaKIVDDtYRKMqvS 87 (110)
T 2rno_A 8 DLVSSCKDKLAYFRIKELKDILNQLGLPKQGKKQDLIDRVLALLTDEQGQRHHGWGRKNSLTKEAVAKIVDDTYRKMQIQ 87 (110)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHTCCSCCCHHHHHHHHHHHHHSSCCTTSCCCSTTGGGSHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhCCcccCccHHHHHHHHHHcCHHHhcccccccccccccHHHHHHHHHHHHHHHhcc
Confidence 345789999999999999999999999999999999999999999862 789999999999999
Q ss_pred cchhhhhhcCCCCCccccccccc
Q 003096 66 EAADLAIMGQSGLDICNVKVEME 88 (848)
Q Consensus 66 ~~~~~a~~~q~~~~~s~v~~~~~ 88 (848)
+++++|+.+|++++++ +++..+
T Consensus 88 gAtDLASk~q~~sd~s-~k~k~E 109 (110)
T 2rno_A 88 CAPDLATRSHSGSDFS-FRPIEE 109 (110)
T ss_dssp TCCCSCTTCSSCSSSC-SCCCTT
T ss_pred CCccccccCccccCcc-cccCCC
Confidence 9999999999999987 777544
No 4
>1v66_A Protein inhibitor of activated STAT protein 1; four helix bundle, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=99.73 E-value=1.7e-18 Score=145.84 Aligned_cols=60 Identities=27% Similarity=0.445 Sum_probs=56.5
Q ss_pred hhHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCHHHHHHHHHHhcCchh---HHHHHHHHHHhh
Q 003096 3 IHVLNLQGKLVNFRMKELKDVLTKLGLPKQGKKQDLVDRIFHQLSDEG---VARIIDDTYRKM 62 (848)
Q Consensus 3 ~~~~~lk~ml~sFRV~ELk~lL~~lGl~KsGrKqEL~dRil~lL~~~~---v~~~I~elYrk~ 62 (848)
+++.++++||++|||+|||.||+++|++|+|||+||+.|+++||+..+ ++.||+|+|+++
T Consensus 2 ~~~~el~~Mv~sfRVsELq~LLg~~gr~KsGrK~eL~~RaL~LL~~~~s~~v~~KIrELy~~r 64 (65)
T 1v66_A 2 ADSAELKQMVMSLRVSELQVLLGYAGRNKHGRKHELLTKALHLLKAGCSPAVQMKIKELYRRR 64 (65)
T ss_dssp CCTTHHHHHHTTCCHHHHHHHHHTTCCCCCSCHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHhHHHHHHHHHHcCCCCcCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc
Confidence 567889999999999999999999999999999999999999999874 889999999986
No 5
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=98.88 E-value=7.5e-10 Score=94.04 Aligned_cols=65 Identities=48% Similarity=1.016 Sum_probs=53.8
Q ss_pred ccCCCCccccCCCCCCCCCCceeeCCCccccccccccccCCCCccccccCCCCcccccccccccCC
Q 003096 92 SLNLGGKIFCPCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKRAD 157 (848)
Q Consensus 92 ~~~~~~~vRCiCGSSl~s~~mIQC~~~~C~v~QH~sCv~Ip~Kp~~~ipvhPdvFyCe~CRLKr~d 157 (848)
..++...++|+|+.....+.||+|++..|..|||..|+++..++... ...|+.|||+.||++|+|
T Consensus 4 ~~~~e~~v~C~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~-~~~p~~~~C~~Cr~~r~D 68 (68)
T 2rsd_A 4 SFQPEAKVRCICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGES-AEVPPVFYCELCRLSRAD 68 (68)
T ss_dssp CCCSSCEECCTTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSC-CCCCSSCCCHHHHHHHTC
T ss_pred CcCCCCCEEeECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccc-cCCCCcEECcCccCcccC
Confidence 44667789999998877889999997679999999999997655433 245889999999999865
No 6
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=98.69 E-value=8.8e-09 Score=89.59 Aligned_cols=69 Identities=48% Similarity=0.962 Sum_probs=55.7
Q ss_pred ccccCCCCccccCCCCCCCCCCceeeCCCccccccccccccCCCCccccccCCCCcccccccccccCCc
Q 003096 90 EDSLNLGGKIFCPCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKRADP 158 (848)
Q Consensus 90 ~~~~~~~~~vRCiCGSSl~s~~mIQC~~~~C~v~QH~sCv~Ip~Kp~~~ipvhPdvFyCe~CRLKr~dP 158 (848)
.+...+...++|+|+.....+.||+|+++.|..|||..|++++.++....+..|+.|||+.|+-++..|
T Consensus 8 dd~~~~~~~~~CiC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~~~~ 76 (78)
T 1wew_A 8 EDPFQPEIKVRCVCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTSGPS 76 (78)
T ss_dssp CCSSSCCCCCCCSSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCCSCC
T ss_pred ccccCCCCCEEeECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcccCCC
Confidence 344566788999999987788999999666999999999999876544334568999999999886443
No 7
>2rnn_A E3 SUMO-protein ligase SIZ1; SUMO ligase, DNA binding, sumoylation, metal-binding, nucLeu phosphoprotein, UBL conjugation pathway; NMR {Saccharomyces cerevisiae}
Probab=98.26 E-value=1.1e-06 Score=82.04 Aligned_cols=47 Identities=26% Similarity=0.317 Sum_probs=43.8
Q ss_pred hhHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCHHHHHHHHHHhcCch
Q 003096 3 IHVLNLQGKLVNFRMKELKDVLTKLGLPKQGKKQDLVDRIFHQLSDE 49 (848)
Q Consensus 3 ~~~~~lk~ml~sFRV~ELk~lL~~lGl~KsGrKqEL~dRil~lL~~~ 49 (848)
.|+......|..++|.|||++|++.||+.+|+|+||++||.++|+..
T Consensus 28 ~e~~~~~~~l~kLtVaELK~~cr~~GL~~sGkKaeLi~RI~~yl~~~ 74 (114)
T 2rnn_A 28 NEVEETITLMELLKVSELKDICRSVSFPVSGRKAVLQDLIRNFLQNA 74 (114)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHhhHHHHHHHHHHcCCCcCCcHHHHHHHHHHHHHhc
Confidence 46788889999999999999999999999999999999999998864
No 8
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=97.77 E-value=7.7e-06 Score=66.01 Aligned_cols=47 Identities=30% Similarity=0.788 Sum_probs=40.0
Q ss_pred ccccCCCCCCCCCCceeeCCCccccccccccccCCCCccccccCCCCcccccccc
Q 003096 98 KIFCPCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCR 152 (848)
Q Consensus 98 ~vRCiCGSSl~s~~mIQC~~~~C~v~QH~sCv~Ip~Kp~~~ipvhPdvFyCe~CR 152 (848)
.++|+|+....++.||+|+. |..|+|..|+++...+ .|+.|+|+.|+
T Consensus 4 ~~~C~C~~~~~~~~MI~Cd~--C~~W~H~~Cvgi~~~~------~~~~~~C~~C~ 50 (52)
T 3o7a_A 4 LVTCFCMKPFAGRPMIECNE--CHTWIHLSCAKIRKSN------VPEVFVCQKCR 50 (52)
T ss_dssp CBCSTTCCBCTTCCEEECTT--TCCEEETTTTTCCGGG------CCSSCCCHHHH
T ss_pred CeEEEeCCcCCCCCEEEcCC--CCccccccccCCCccc------CCCcEECcCCC
Confidence 57899998766779999998 9999999999997532 36899999996
No 9
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=97.76 E-value=1.3e-05 Score=68.35 Aligned_cols=52 Identities=29% Similarity=0.737 Sum_probs=43.2
Q ss_pred CCCccccCCCCCCCCCCceeeCCCccccccccccccCCCCccccccCCCCcccccccccc
Q 003096 95 LGGKIFCPCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIK 154 (848)
Q Consensus 95 ~~~~vRCiCGSSl~s~~mIQC~~~~C~v~QH~sCv~Ip~Kp~~~ipvhPdvFyCe~CRLK 154 (848)
....++|+|+.......||+|+. |..|+|..|+++...+ .|+.|+|+.|+-.
T Consensus 16 ~~~~~~CiC~~~~~~~~MIqCd~--C~~WfH~~Cvgi~~~~------~~~~~~C~~C~~s 67 (68)
T 3o70_A 16 FQGLVTCFCMKPFAGRPMIECNE--CHTWIHLSCAKIRKSN------VPEVFVCQKCRDS 67 (68)
T ss_dssp TTTCCCSTTCCCCTTCCEEECTT--TCCEEETTTTTCCTTS------CCSSCCCHHHHTC
T ss_pred CCCceEeECCCcCCCCCEEECCC--CCccccccccCcCccc------CCCcEECCCCCCC
Confidence 35578999998766778999998 9999999999997542 3689999999743
No 10
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=97.76 E-value=2.1e-05 Score=71.25 Aligned_cols=53 Identities=30% Similarity=0.627 Sum_probs=44.7
Q ss_pred CCCccccCCCCCCCCCCceeeCCCccccccccccccCCCCccccccCCCCccccccccccc
Q 003096 95 LGGKIFCPCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKR 155 (848)
Q Consensus 95 ~~~~vRCiCGSSl~s~~mIQC~~~~C~v~QH~sCv~Ip~Kp~~~ipvhPdvFyCe~CRLKr 155 (848)
....++|+|+.....+.||+|+. |..|+|..|++++... .|+.|+|+.|+-++
T Consensus 25 ~~d~vrCiC~~~~~~~~mi~Cd~--C~~w~H~~C~~~~~~~------~p~~w~C~~C~~~~ 77 (98)
T 2lv9_A 25 GTDVTRCICGFTHDDGYMICCDK--CSVWQHIDCMGIDRQH------IPDTYLCERCQPRN 77 (98)
T ss_dssp CCCBCCCTTSCCSCSSCEEEBTT--TCBEEETTTTTCCTTS------CCSSBCCTTTSSSC
T ss_pred CCCCEEeECCCccCCCcEEEcCC--CCCcCcCcCCCCCccC------CCCCEECCCCcCCC
Confidence 34578999998888899999998 9999999999986432 46789999998764
No 11
>2do1_A Nuclear protein HCC-1; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=97.71 E-value=1.9e-05 Score=65.38 Aligned_cols=38 Identities=34% Similarity=0.512 Sum_probs=35.1
Q ss_pred HhhcCHHHHHHHHHHcCCCCCCCHHHHHHHHHHhcCch
Q 003096 12 LVNFRMKELKDVLTKLGLPKQGKKQDLVDRIFHQLSDE 49 (848)
Q Consensus 12 l~sFRV~ELk~lL~~lGl~KsGrKqEL~dRil~lL~~~ 49 (848)
+..++|.|||..|...||+.+|+|+||++|+..+|..+
T Consensus 10 l~klkV~eLK~~L~~rGL~~~G~KaeLieRL~~~l~~~ 47 (55)
T 2do1_A 10 LHKLKLAELKQECLARGLETKGIKQDLIHRLQAYLEEH 47 (55)
T ss_dssp TTTSCHHHHHHHHHHHTCCCCSCHHHHHHHHHHHHHHT
T ss_pred HHHCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcC
Confidence 56899999999999999999999999999999988653
No 12
>1zrj_A E1B-55KDA-associated protein 5 isoform C; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=97.63 E-value=5e-05 Score=61.78 Aligned_cols=38 Identities=29% Similarity=0.536 Sum_probs=35.2
Q ss_pred HhhcCHHHHHHHHHHcCCCCCCCHHHHHHHHHHhcCch
Q 003096 12 LVNFRMKELKDVLTKLGLPKQGKKQDLVDRIFHQLSDE 49 (848)
Q Consensus 12 l~sFRV~ELk~lL~~lGl~KsGrKqEL~dRil~lL~~~ 49 (848)
+..++|.|||..|..-||+.+|+|+||++|+...+..+
T Consensus 10 ~~klkV~eLK~eLk~RgL~~~G~Ka~Li~RL~~~~~~e 47 (50)
T 1zrj_A 10 VRRLKVNELREELQRRGLDTRGLKAELAERLQAALSGP 47 (50)
T ss_dssp GGGSCHHHHHHHHHHTTCCCCSCHHHHHHHHHHHHCCC
T ss_pred HHHCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcc
Confidence 56899999999999999999999999999999988753
No 13
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.61 E-value=2.4e-05 Score=66.82 Aligned_cols=53 Identities=32% Similarity=0.599 Sum_probs=43.1
Q ss_pred CCccccCCCCCCC-CCCceeeCCCccccccccccccCCCCccccccCCCCccccccccccc
Q 003096 96 GGKIFCPCGTSLP-SESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKR 155 (848)
Q Consensus 96 ~~~vRCiCGSSl~-s~~mIQC~~~~C~v~QH~sCv~Ip~Kp~~~ipvhPdvFyCe~CRLKr 155 (848)
...++|+|+.... ...||+|+. |..|+|..|+++.... ..|..|+|+.|+-++
T Consensus 14 ~~~~~C~C~~~~~~g~~mI~Cd~--C~~W~H~~Cvg~~~~~-----~~~~~~~C~~C~~~~ 67 (72)
T 1wee_A 14 NWKVDCKCGTKDDDGERMLACDG--CGVWHHTRCIGINNAD-----ALPSKFLCFRCIELS 67 (72)
T ss_dssp SSEECCTTCCCSCCSSCEEECSS--SCEEEETTTTTCCTTS-----CCCSCCCCHHHHHHC
T ss_pred CcceEeeCCCccCCCCcEEECCC--CCCccCCeeeccCccc-----cCCCcEECCCccCCC
Confidence 4578999998754 457999998 9999999999997532 247899999998764
No 14
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=97.54 E-value=6.7e-06 Score=70.80 Aligned_cols=57 Identities=23% Similarity=0.405 Sum_probs=44.4
Q ss_pred CccccCCCCCCCCCCceeeCCCccccccccccccCCCCccccccCCCCccccccccccc
Q 003096 97 GKIFCPCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKR 155 (848)
Q Consensus 97 ~~vRCiCGSSl~s~~mIQC~~~~C~v~QH~sCv~Ip~Kp~~~ipvhPdvFyCe~CRLKr 155 (848)
..++|+|+.......||+|+. |..|+|..|+++...+.+.+...+..|+|+.|+-++
T Consensus 15 ~~~~C~C~~~~~~~~MI~Cd~--C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 15 NALYCICRQPHNNRFMICCDR--CEEWFHGDCVGISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp TCCCSTTCCCCCSSCEEECSS--SCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred CCCEEECCCccCCCCEEEeCC--CCCcEeCeEEccchhhhhhccCCCCeEECcCCcCcc
Confidence 368999998776779999998 999999999999754322222246899999998763
No 15
>1h1j_S THO1 protein; SAP domain, DNA binding; NMR {Saccharomyces cerevisiae} SCOP: a.140.2.1 PDB: 2wqg_A
Probab=97.47 E-value=7.6e-05 Score=60.93 Aligned_cols=37 Identities=32% Similarity=0.495 Sum_probs=33.9
Q ss_pred HhhcCHHHHHHHHHHcCCCCCCCHHHHHHHHHHhcCc
Q 003096 12 LVNFRMKELKDVLTKLGLPKQGKKQDLVDRIFHQLSD 48 (848)
Q Consensus 12 l~sFRV~ELk~lL~~lGl~KsGrKqEL~dRil~lL~~ 48 (848)
+..++|.|||..|..-||+.+|+|+||++|+......
T Consensus 5 ~~kltV~eLK~~Lk~RGL~~~G~KadLieRL~~~~~~ 41 (51)
T 1h1j_S 5 YSSLTVVQLKDLLTKRNLSVGGLKNELVQRLIKDDEE 41 (51)
T ss_dssp GGGCCHHHHHHHHHHTTCCCCSSHHHHHHHHHHHHHH
T ss_pred HHHCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHh
Confidence 5789999999999999999999999999999887654
No 16
>2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A
Probab=97.45 E-value=7.4e-05 Score=65.40 Aligned_cols=39 Identities=28% Similarity=0.437 Sum_probs=35.6
Q ss_pred HHhhcCHHHHHHHHHHcCCCCCCCHHHHHHHHHHhcCch
Q 003096 11 KLVNFRMKELKDVLTKLGLPKQGKKQDLVDRIFHQLSDE 49 (848)
Q Consensus 11 ml~sFRV~ELk~lL~~lGl~KsGrKqEL~dRil~lL~~~ 49 (848)
.+..++|.|||+.|..-||+.+|+|+||++|+..++..+
T Consensus 25 ~l~klkVaeLK~eLk~RGL~~sG~KaeLIeRL~~~~~~~ 63 (75)
T 2kvu_A 25 NLDDMKVAELKQELKLRSLPVSGTKTELIERLRAYQDQI 63 (75)
T ss_dssp TTTTSCHHHHHHHHHHTTCCCCSCHHHHHHHHHHHHHTT
T ss_pred HHHHCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcc
Confidence 467899999999999999999999999999999887653
No 17
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=97.42 E-value=3e-05 Score=66.82 Aligned_cols=54 Identities=22% Similarity=0.476 Sum_probs=43.3
Q ss_pred CCccccCCCCCCC-CCCceeeCCCccccccccccccCCCCccccccCCCCccccccccccc
Q 003096 96 GGKIFCPCGTSLP-SESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKR 155 (848)
Q Consensus 96 ~~~vRCiCGSSl~-s~~mIQC~~~~C~v~QH~sCv~Ip~Kp~~~ipvhPdvFyCe~CRLKr 155 (848)
...++|+|+.... .+.||+|+. |..|+|..|+++...+.+ .++.|+|+.|+-+.
T Consensus 8 ~~~~yCiC~~~~~~~~~MI~Cd~--C~~WfH~~Cvg~~~~~~~----~~~~~~C~~C~~~~ 62 (75)
T 3kqi_A 8 TVPVYCVCRLPYDVTRFMIECDA--CKDWFHGSCVGVEEEEAP----DIDIYHCPNCEKTH 62 (75)
T ss_dssp CCCEETTTTEECCTTSCEEECTT--TCCEEEHHHHTCCTTTGG----GBSSCCCHHHHHHH
T ss_pred CCeeEEECCCcCCCCCCEEEcCC--CCCCEecccccccccccC----CCCEEECCCCcccC
Confidence 4578999987543 679999998 999999999999765422 24789999998774
No 18
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=97.37 E-value=6.1e-05 Score=65.45 Aligned_cols=54 Identities=24% Similarity=0.421 Sum_probs=43.6
Q ss_pred CCccccCCCCCCC-CCCceeeCCCccccccccccccCCCCccccccCCCCccccccccccc
Q 003096 96 GGKIFCPCGTSLP-SESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKR 155 (848)
Q Consensus 96 ~~~vRCiCGSSl~-s~~mIQC~~~~C~v~QH~sCv~Ip~Kp~~~ipvhPdvFyCe~CRLKr 155 (848)
...++|+|+.... .+.||+|+. |..|+|..|+++...+. ..++.|+|+.|+-++
T Consensus 10 ~~~~~C~C~~~~d~~~~MIqCd~--C~~WfH~~Cvgl~~~~~----~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 10 LVPVYCLCRQPYNVNHFMIECGL--CQDWFHGSCVGIEEENA----VDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCCSTTSCSCCSSSCEEEBTT--TCCEEEHHHHTCCHHHH----TTCSBBCCTTTTTTS
T ss_pred CCccEEEcCCccCCCCceEEcCC--CCCcEEeeecCcccccc----cCCCeEECCCccccc
Confidence 4578999987653 789999998 99999999999964321 236899999999875
No 19
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.23 E-value=0.00018 Score=59.80 Aligned_cols=53 Identities=30% Similarity=0.463 Sum_probs=42.1
Q ss_pred Ccccc-CCCCCCC-CCCceeeCCCccccccccccccCCCCccccccCCCCccccccccccc
Q 003096 97 GKIFC-PCGTSLP-SESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKR 155 (848)
Q Consensus 97 ~~vRC-iCGSSl~-s~~mIQC~~~~C~v~QH~sCv~Ip~Kp~~~ipvhPdvFyCe~CRLKr 155 (848)
...+| +|+.... .+.||+|+. |..|+|..|+++...+.+ .++.|+|+.|+-|+
T Consensus 5 e~~~C~~C~~~~~~~~~mI~Cd~--C~~WfH~~Cvgl~~~~~~----~~~~~~C~~C~~k~ 59 (64)
T 1we9_A 5 SSGQCGACGESYAADEFWICCDL--CEMWFHGKCVKITPARAE----HIKQYKCPSCSNKS 59 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECSS--SCCEEETTTTTCCTTGGG----GCSSCCCHHHHTTT
T ss_pred CCCCCCCCCCccCCCCCEEEccC--CCCCCCccccCcChhHhc----CCCcEECCCCcCcC
Confidence 35678 8987643 688999997 999999999999765422 35799999998875
No 20
>1jjr_A KU70, thyroid autoantigen; DNA repair protein, protein-DNA interaction, solution structure, DNA binding protein; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=97.14 E-value=0.00025 Score=69.26 Aligned_cols=40 Identities=30% Similarity=0.474 Sum_probs=36.8
Q ss_pred HHHhhcCHHHHHHHHHHcCCCCCCCHHHHHHHHHHhcCch
Q 003096 10 GKLVNFRMKELKDVLTKLGLPKQGKKQDLVDRIFHQLSDE 49 (848)
Q Consensus 10 ~ml~sFRV~ELk~lL~~lGl~KsGrKqEL~dRil~lL~~~ 49 (848)
..|..|+|.|||++|.+-||+.+|||+||++||.++|...
T Consensus 59 g~L~kltV~eLK~~l~~~gL~~~GkKadLI~Ri~~~l~~K 98 (151)
T 1jjr_A 59 GTLGKFTVPMLKEACRAYGLKSGLKKQELLEALTKHFQDK 98 (151)
T ss_dssp TCTTSSCHHHHHHHHHHHTCCCCSSSHHHHHHHHHTTCC-
T ss_pred CcHHhccHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhhh
Confidence 5678899999999999999999999999999999998865
No 21
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=97.00 E-value=0.00078 Score=60.79 Aligned_cols=55 Identities=25% Similarity=0.607 Sum_probs=43.0
Q ss_pred cCCCCccccCCCCCCCCCCceeeCCCccc-cccccccccCCCCccccccCCCCccccccccccc
Q 003096 93 LNLGGKIFCPCGTSLPSESKIQCVDPRCL-VQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKR 155 (848)
Q Consensus 93 ~~~~~~vRCiCGSSl~s~~mIQC~~~~C~-v~QH~sCv~Ip~Kp~~~ipvhPdvFyCe~CRLKr 155 (848)
..+.....|+|+... .+.||+|++..|. .|.|..|+++...+ +..|||+.|+-++
T Consensus 31 ~d~~e~~yCiC~~~~-~g~MI~CD~~dC~~~WfH~~CVgl~~~p-------~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 31 VDPNEPTYCLCHQVS-YGEMIGCDNPDCSIEWFHFACVGLTTKP-------RGKWFCPRCSQES 86 (91)
T ss_dssp CCSCCCBCSTTCCBC-CSCCCCCSCSSCSCCCCCSTTTTCSSCC-------CSSCCCTTTCCCC
T ss_pred cCCCCCcEEECCCCC-CCCEeEecCCCCCCCCEecccCCcCcCC-------CCCEECcCccCcC
Confidence 345667899998754 4689999996677 69999999986543 3689999998764
No 22
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=96.71 E-value=0.0006 Score=71.93 Aligned_cols=67 Identities=15% Similarity=0.169 Sum_probs=56.2
Q ss_pred CceeeeeceEEEecCCCCcccccccccccCcCcccccchhhccccccccccceeccccccCcCcccccCHHHHHHHhcCC
Q 003096 334 DLEIIADSIIVNLRCPKVFSEENSDVLLFGIPFDCTFHWLFLTCNWQMSGSRIRVAGRFKPCVHTGCFDLETFVELNQRT 413 (848)
Q Consensus 334 DlEIv~~s~~VSL~CP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~~RI~vP~Rg~~C~HlQCFDLetFL~mNer~ 413 (848)
|.||+.....++|+|| |++..|+-|++.+.|.|. |+-....++-+..
T Consensus 170 DDDI~v~~~~~el~CP-------------------------------Icl~~f~DPVts~~CGHs--FcR~cI~~~~~~~ 216 (267)
T 3htk_C 170 EDDLQIEGGKIELTCP-------------------------------ITCKPYEAPLISRKCNHV--FDRDGIQNYLQGY 216 (267)
T ss_dssp SSCCCCCSSBCCSBCT-------------------------------TTSSBCSSEEEESSSCCE--EEHHHHHHHSTTC
T ss_pred CccceecCCceeeECc-------------------------------CccCcccCCeeeCCCCCc--ccHHHHHHHHHhC
Confidence 3367778899999999 999999999999999995 9998888888777
Q ss_pred CCceeec---------chhhhhhhHHHHHHH
Q 003096 414 RKASYSF---------ILLFLSMFRIFKLIK 435 (848)
Q Consensus 414 ~tW~C~~---------~~L~l~ID~yf~~IL 435 (848)
.+|.||. .+|+ .|..+..++
T Consensus 217 ~~~~CPvtGCr~~l~~~dL~--pN~~L~~lv 245 (267)
T 3htk_C 217 TTRDCPQAACSQVVSMRDFV--RDPIMELRC 245 (267)
T ss_dssp SCEECSGGGCSCEECGGGEE--ECHHHHHHH
T ss_pred CCCCCCcccccCcCchhhCC--cCHHHHHHH
Confidence 8899975 3466 788877766
No 23
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=96.13 E-value=0.0053 Score=52.77 Aligned_cols=53 Identities=26% Similarity=0.605 Sum_probs=41.2
Q ss_pred CCCccccCCCCCCCCCCceeeCCCccc-cccccccccCCCCccccccCCCCccccccccccc
Q 003096 95 LGGKIFCPCGTSLPSESKIQCVDPRCL-VQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKR 155 (848)
Q Consensus 95 ~~~~vRCiCGSSl~s~~mIQC~~~~C~-v~QH~sCv~Ip~Kp~~~ipvhPdvFyCe~CRLKr 155 (848)
+.....|+|+... .+.||+|++..|. .|.|..|+++...+ +..|||+.|+-++
T Consensus 13 ~~~~~~C~C~~~~-~g~MI~CD~~~C~~~wfH~~Cvgl~~~p-------~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 13 PNEPTYCLCHQVS-YGEMIGCDNPDCSIEWFHFACVGLTTKP-------RGKWFCPRCSQES 66 (71)
T ss_dssp TTSCCCSTTCCCS-CSSEECCSCSSCSCCCEETTTTTCSSCC-------SSCCCCTTTSSCS
T ss_pred CCCCCEEECCCCC-CCCEeEeeCCCCCCccEecccCCcCcCC-------CCCEECCCCCccc
Confidence 4557789998754 3689999986677 69999999986432 3679999997663
No 24
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=96.11 E-value=0.0017 Score=54.53 Aligned_cols=53 Identities=26% Similarity=0.588 Sum_probs=40.1
Q ss_pred CCCccccCCCCCCCCCCceeeCCCccc-cccccccccCCCCccccccCCCCccccccccccc
Q 003096 95 LGGKIFCPCGTSLPSESKIQCVDPRCL-VQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKR 155 (848)
Q Consensus 95 ~~~~vRCiCGSSl~s~~mIQC~~~~C~-v~QH~sCv~Ip~Kp~~~ipvhPdvFyCe~CRLKr 155 (848)
+.....|+|+... .+.||+|++..|. .|.|..|+++...+ ...|||+.|+-+|
T Consensus 8 ~~e~~yC~C~~~~-~g~MI~CD~c~C~~~WfH~~Cvgl~~~p-------~~~w~Cp~C~~~r 61 (62)
T 2g6q_A 8 PNEPTYCLCNQVS-YGEMIGCDNEQCPIEWFHFSCVSLTYKP-------KGKWYCPKCRGDN 61 (62)
T ss_dssp --CCEETTTTEEC-CSEEEECSCTTCSSCEEETGGGTCSSCC-------SSCCCCHHHHTCC
T ss_pred CCCCcEEECCCCC-CCCeeeeeCCCCCcccEecccCCcCcCC-------CCCEECcCcccCC
Confidence 4557899998753 4689999995555 89999999986532 4689999998764
No 25
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=96.11 E-value=0.00098 Score=75.44 Aligned_cols=54 Identities=24% Similarity=0.486 Sum_probs=43.0
Q ss_pred CCccccCCCCCC-CCCCceeeCCCccccccccccccCCCCccccccCCCCccccccccccc
Q 003096 96 GGKIFCPCGTSL-PSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKR 155 (848)
Q Consensus 96 ~~~vRCiCGSSl-~s~~mIQC~~~~C~v~QH~sCv~Ip~Kp~~~ipvhPdvFyCe~CRLKr 155 (848)
....+|+|+... ..+.||+|+. |..|+|..|+++...+. ..++.|+|+.|+-+.
T Consensus 35 ~~~~yC~C~~~~d~~~~MIqCd~--C~~WfH~~Cvgl~~~~~----~~~~~~~C~~C~~~~ 89 (488)
T 3kv5_D 35 PPPVYCVCRQPYDVNRFMIECDI--CKDWFHGSCVGVEEHHA----VDIDLYHCPNCAVLH 89 (488)
T ss_dssp CCCEETTTTEECCTTSCEEEBTT--TCCEEEHHHHTCCGGGG----GGEEEBCCHHHHHHH
T ss_pred CCCeEEeCCCcCCCCCCeEEccC--CCCceeeeecCcCcccc----cCCCEEECCCCcCCc
Confidence 457899998753 4789999998 99999999999975432 235789999998663
No 26
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=96.08 E-value=0.0017 Score=53.89 Aligned_cols=53 Identities=26% Similarity=0.618 Sum_probs=39.6
Q ss_pred CCCccccCCCCCCCCCCceeeCCCccc-cccccccccCCCCccccccCCCCccccccccccc
Q 003096 95 LGGKIFCPCGTSLPSESKIQCVDPRCL-VQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKR 155 (848)
Q Consensus 95 ~~~~vRCiCGSSl~s~~mIQC~~~~C~-v~QH~sCv~Ip~Kp~~~ipvhPdvFyCe~CRLKr 155 (848)
+.....|+|+... .+.||+|++..|. .|.|..|+++...+ ...|||+.|+-+|
T Consensus 6 ~~e~~yC~C~~~~-~g~mi~CD~~~C~~~wfH~~Cvgl~~~p-------~~~w~Cp~C~~~r 59 (59)
T 3c6w_A 6 SNEPTYCLCHQVS-YGEMIGCDNPDCPIEWFHFACVDLTTKP-------KGKWFCPRCVQEK 59 (59)
T ss_dssp --CCEETTTTEEC-CSEEEECSCTTCSSCEEETGGGTCSSCC-------SSCCCCHHHHCC-
T ss_pred CCCCcEEECCCCC-CCCeeEeeCCCCCCCCEecccCCcccCC-------CCCEECcCccCcC
Confidence 3456789998754 4689999997777 59999999986543 2679999997653
No 27
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=95.93 E-value=0.00077 Score=75.58 Aligned_cols=53 Identities=25% Similarity=0.489 Sum_probs=42.1
Q ss_pred CccccCCCCCC-CCCCceeeCCCccccccccccccCCCCccccccCCCCccccccccccc
Q 003096 97 GKIFCPCGTSL-PSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKR 155 (848)
Q Consensus 97 ~~vRCiCGSSl-~s~~mIQC~~~~C~v~QH~sCv~Ip~Kp~~~ipvhPdvFyCe~CRLKr 155 (848)
..++|+|+... ..+.||+|+. |..|+|..|+++...+. ..++.|+|+.|+-++
T Consensus 4 ~~~yCiC~~~~d~~~~MIqCD~--C~~WfH~~CVgi~~~~~----~~~~~y~C~~C~~~~ 57 (447)
T 3kv4_A 4 VPVYCLCRLPYDVTRFMIECDM--CQDWFHGSCVGVEEEKA----ADIDLYHCPNCEVLH 57 (447)
T ss_dssp CCEETTTTEECCTTSCEEECTT--TCCEEEHHHHTCCHHHH----TTEEECCCHHHHHHH
T ss_pred CCeEEeCCCcCCCCCCeEEcCC--CCcccccccCCcCcccc----cCCCEEECCCCcccc
Confidence 46799998753 4789999998 99999999999964321 234789999998764
No 28
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=95.91 E-value=0.0029 Score=54.00 Aligned_cols=51 Identities=29% Similarity=0.504 Sum_probs=40.2
Q ss_pred Ccccc-CCCCCCCCCCceeeCCCccccccccccccCCCCccccccCCCCcccccccccc
Q 003096 97 GKIFC-PCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIK 154 (848)
Q Consensus 97 ~~vRC-iCGSSl~s~~mIQC~~~~C~v~QH~sCv~Ip~Kp~~~ipvhPdvFyCe~CRLK 154 (848)
....| +|+.......||+|+. |..|+|..|++++..+ .....|||+.|+-+
T Consensus 17 ~~~~C~~C~~~~~~~~mi~CD~--C~~wfH~~Cv~~~~~~-----~~~~~w~C~~C~~~ 68 (75)
T 2k16_A 17 QIWICPGCNKPDDGSPMIGCDD--CDDWYHWPCVGIMAAP-----PEEMQWFCPKCANK 68 (75)
T ss_dssp EEECBTTTTBCCSSCCEEECSS--SSSEEEHHHHTCSSCC-----CSSSCCCCTTTHHH
T ss_pred CCcCCCCCCCCCCCCCEEEcCC--CCcccccccCCCCccC-----CCCCCEEChhccCc
Confidence 34578 8987766678999998 9999999999987543 12368999999765
No 29
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.78 E-value=0.0034 Score=53.83 Aligned_cols=52 Identities=23% Similarity=0.604 Sum_probs=39.9
Q ss_pred CCCccccCCCCCCCCCCceeeCCCcc-ccccccccccCCCCccccccCCCCcccccccccc
Q 003096 95 LGGKIFCPCGTSLPSESKIQCVDPRC-LVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIK 154 (848)
Q Consensus 95 ~~~~vRCiCGSSl~s~~mIQC~~~~C-~v~QH~sCv~Ip~Kp~~~ipvhPdvFyCe~CRLK 154 (848)
+.....|+|.... .+.||+|++-.| ..|.|..|+++...+ ...|||+.|+-+
T Consensus 3 ~~~~~yC~C~~~~-~g~MI~CD~cdC~~~WfH~~Cvgl~~~p-------~~~w~Cp~C~~~ 55 (70)
T 1x4i_A 3 SGSSGYCICNQVS-YGEMVGCDNQDCPIEWFHYGCVGLTEAP-------KGKWYCPQCTAA 55 (70)
T ss_dssp CSCCCCSTTSCCC-CSSEECCSCTTCSCCCEEHHHHTCSSCC-------SSCCCCHHHHHH
T ss_pred CCCCeEEEcCCCC-CCCEeEeCCCCCCccCCcccccccCcCC-------CCCEECCCCCcc
Confidence 4567899998764 468999999333 379999999986532 478999999765
No 30
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=95.76 E-value=0.0012 Score=64.21 Aligned_cols=54 Identities=28% Similarity=0.490 Sum_probs=41.9
Q ss_pred CCccccCCCCCC-CCCCceeeCCCccccccccccccCCCCccccccCCCCccccccccccc
Q 003096 96 GGKIFCPCGTSL-PSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKR 155 (848)
Q Consensus 96 ~~~vRCiCGSSl-~s~~mIQC~~~~C~v~QH~sCv~Ip~Kp~~~ipvhPdvFyCe~CRLKr 155 (848)
....+|+|+... ..+.||+|+. |..|+|..|+++...+ ...++.|+|+.|+-++
T Consensus 6 ~~~~~C~C~~~~~~~~~mi~Cd~--C~~WfH~~Cv~~~~~~----~~~~~~~~C~~C~~~~ 60 (174)
T 2ri7_A 6 DTKLYCICKTPEDESKFYIGCDR--CQNWYHGRCVGILQSE----AELIDEYVCPQCQSTE 60 (174)
T ss_dssp -CCEETTTTEECCTTSCEEECTT--TCCEEEHHHHTCCHHH----HTTCSSCCCHHHHHHH
T ss_pred CCCcEeeCCCCCCCCCCEeECCC--CCchhChhhcCCchhh----ccCccCeecCCCcchh
Confidence 356789998754 3688999998 9999999999886322 1246899999998763
No 31
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=95.70 E-value=0.0031 Score=52.45 Aligned_cols=53 Identities=28% Similarity=0.636 Sum_probs=38.6
Q ss_pred CCCccccCCCCCCCCCCceeeCCCccc-cccccccccCCCCccccccCCCCccccccccccc
Q 003096 95 LGGKIFCPCGTSLPSESKIQCVDPRCL-VQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKR 155 (848)
Q Consensus 95 ~~~~vRCiCGSSl~s~~mIQC~~~~C~-v~QH~sCv~Ip~Kp~~~ipvhPdvFyCe~CRLKr 155 (848)
+.....|+|+... .+.||+|++..|. .|.|..|+++...+ ...|||+.|+-+|
T Consensus 7 ~~e~~~C~C~~~~-~g~mi~CD~cdC~~~wfH~~Cvgl~~~p-------~g~w~C~~C~~~r 60 (60)
T 2vnf_A 7 PNEPTYCLCHQVS-YGEMIGCDNPDCSIEWFHFACVGLTTKP-------RGKWFCPRCSQER 60 (60)
T ss_dssp --CCEETTTTEEC-CSEEEECSCTTCSSCEEETGGGTCSSCC-------SSCCCCHHHHC--
T ss_pred CCCCCEEECCCcC-CCCEEEeCCCCCCCceEehhcCCCCcCC-------CCCEECcCccCcC
Confidence 3457789998754 4789999985566 79999999986532 3679999997654
No 32
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=95.27 E-value=0.0031 Score=50.83 Aligned_cols=46 Identities=20% Similarity=0.341 Sum_probs=32.9
Q ss_pred cCCCCCC-CCCCceeeCCCccccccccccccCCCCccccccCCCCcccccccc
Q 003096 101 CPCGTSL-PSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCR 152 (848)
Q Consensus 101 CiCGSSl-~s~~mIQC~~~~C~v~QH~sCv~Ip~Kp~~~ipvhPdvFyCe~CR 152 (848)
|+|.... ....||+|++ .|+.|+|..|+++...+. .+..|+|+.|+
T Consensus 6 c~C~~p~~~~~~mI~Cd~-~C~~WfH~~Cvgl~~~~~-----~~~~~~C~~C~ 52 (52)
T 2kgg_A 6 QNCQRPCKDKVDWVQCDG-GCDEWFHQVCVGVSPEMA-----ENEDYICINCA 52 (52)
T ss_dssp TTCCCCCCTTCCEEECTT-TTCCEEETTTTTCCHHHH-----HHSCCCCSCC-
T ss_pred CCCcCccCCCCcEEEeCC-CCCccCcccccCCCcccc-----CCCCEECCCCC
Confidence 4565443 2578999994 499999999999964321 23789999985
No 33
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=94.51 E-value=0.019 Score=51.67 Aligned_cols=50 Identities=22% Similarity=0.638 Sum_probs=37.4
Q ss_pred CCCccccCCCCCCCCCCceeeCCCccc-cccccccccCCCCccccccCCCCcccccc-cc
Q 003096 95 LGGKIFCPCGTSLPSESKIQCVDPRCL-VQQHISCVIIPEKPMEEIRLLPPLFFCET-CR 152 (848)
Q Consensus 95 ~~~~vRCiCGSSl~s~~mIQC~~~~C~-v~QH~sCv~Ip~Kp~~~ipvhPdvFyCe~-CR 152 (848)
......|+|+.... +.||.|++-.|. .|.|..|+++...+ ...|||+. |+
T Consensus 23 ~~~~~yCiC~~~~~-g~MI~CD~c~C~~eWfH~~CVgl~~~p-------~~~W~Cp~cC~ 74 (90)
T 2jmi_A 23 NQEEVYCFCRNVSY-GPMVACDNPACPFEWFHYGCVGLKQAP-------KGKWYCSKDCK 74 (90)
T ss_dssp -CCSCCSTTTCCCS-SSEECCCSSSCSCSCEETTTSSCSSCT-------TSCCCSSHHHH
T ss_pred CCCCcEEEeCCCCC-CCEEEecCCCCccccCcCccCCCCcCC-------CCCccCChhhc
Confidence 34578999986443 579999994444 79999999986532 25899999 85
No 34
>2jx3_A Protein DEK; alpha helix, SAF/SAP motif, DNA binding, chromosomal rearrangement, DNA-binding, nucleus, phosphorylation, proto oncogene; NMR {Homo sapiens}
Probab=92.58 E-value=0.12 Score=49.46 Aligned_cols=45 Identities=29% Similarity=0.383 Sum_probs=41.5
Q ss_pred HHHHHHHhhcCHHHHHHHHHHcCCCCCCCHHHHHHHHHHhcCchh
Q 003096 6 LNLQGKLVNFRMKELKDVLTKLGLPKQGKKQDLVDRIFHQLSDEG 50 (848)
Q Consensus 6 ~~lk~ml~sFRV~ELk~lL~~lGl~KsGrKqEL~dRil~lL~~~~ 50 (848)
...+++|..+...+|+++|.-|+++.+|.|.||++||+++|..+.
T Consensus 66 ~k~~e~l~K~~~~~L~~~c~iL~l~~~g~keelv~ril~FL~~P~ 110 (131)
T 2jx3_A 66 KKKEEMLKKFRNAMLKSICEVLDLERSGVNSELVKRILNFLMHPK 110 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTCCSCSCHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHccCHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHhCcc
Confidence 346788889999999999999999999999999999999999875
No 35
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=92.57 E-value=0.019 Score=57.57 Aligned_cols=59 Identities=24% Similarity=0.560 Sum_probs=39.3
Q ss_pred cc-CCCCCCC-C---CCceeeCCCccccccccccccCCCCccccccCCC--CcccccccccccCCchhh
Q 003096 100 FC-PCGTSLP-S---ESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLP--PLFFCETCRIKRADPFWI 161 (848)
Q Consensus 100 RC-iCGSSl~-s---~~mIQC~~~~C~v~QH~sCv~Ip~Kp~~~ipvhP--dvFyCe~CRLKr~dPFy~ 161 (848)
.| +|+.... . ..||+|+. |..|.|..|+++.....+.+...| ..|+|+.|+-+. .|-|+
T Consensus 4 ~CpiC~k~Y~~~~~~~~MIqCd~--C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~-~~~~~ 69 (183)
T 3lqh_A 4 FCPLCDKCYDDDDYESKMMQCGK--CDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH-PAEWR 69 (183)
T ss_dssp BCTTTCCBCTTCCTTCCEEECTT--TCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS-SCHHH
T ss_pred cCCCCcCccCCcccCCCeEECCC--CCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC-CHHHH
Confidence 35 4765433 2 35999998 999999999999642222221123 379999999884 55554
No 36
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=91.20 E-value=0.052 Score=62.08 Aligned_cols=40 Identities=25% Similarity=0.418 Sum_probs=32.2
Q ss_pred CCCceeeCCCccccccccccccCCCCccccccCCCCcccccccccc
Q 003096 109 SESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIK 154 (848)
Q Consensus 109 s~~mIQC~~~~C~v~QH~sCv~Ip~Kp~~~ipvhPdvFyCe~CRLK 154 (848)
...||+|+. |..|+|..|+++.....+ ..+.|+|+.|+-+
T Consensus 55 ~~~mI~CD~--C~~WfH~~CVgi~~~~a~----~~~~y~Cp~C~~~ 94 (528)
T 3pur_A 55 DFQWIGCDS--CQTWYHFLCSGLEQFEYY----LYEKFFCPKCVPH 94 (528)
T ss_dssp TTSEEECTT--TCCEEEGGGTTCCGGGTT----TEEECCCTTTHHH
T ss_pred CCCEEECCC--CCcCCCCcCCCCChhHhc----CCCeEECcCCcCC
Confidence 468999998 999999999999754322 3488999999754
No 37
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=90.87 E-value=0.038 Score=50.63 Aligned_cols=53 Identities=17% Similarity=0.436 Sum_probs=36.8
Q ss_pred CCCCCC-CCCCceeeCCCccccccccccccCCCCccccc-cCCCCccccccccccc
Q 003096 102 PCGTSL-PSESKIQCVDPRCLVQQHISCVIIPEKPMEEI-RLLPPLFFCETCRIKR 155 (848)
Q Consensus 102 iCGSSl-~s~~mIQC~~~~C~v~QH~sCv~Ip~Kp~~~i-pvhPdvFyCe~CRLKr 155 (848)
+|.... ..+.||+|++ .|..|.|..|+++.....+.+ +.....|+|+.|+-++
T Consensus 8 iC~~p~~~~~~mi~Cdd-~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 8 ACRSEVNDDQDAILCEA-SCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp TTCSBCCTTSCEEECTT-TTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred CCCCccCCCCCEEEecC-CcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 354432 3567999982 399999999999975433333 1234789999998874
No 38
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=85.28 E-value=0.089 Score=44.51 Aligned_cols=50 Identities=20% Similarity=0.395 Sum_probs=32.7
Q ss_pred CCCCC-CCCCCceeeCCCccccccccccccCCCCcccccc-CCCCcccccccc
Q 003096 102 PCGTS-LPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIR-LLPPLFFCETCR 152 (848)
Q Consensus 102 iCGSS-l~s~~mIQC~~~~C~v~QH~sCv~Ip~Kp~~~ip-vhPdvFyCe~CR 152 (848)
.|... .....||+|+. .|..|.|..|+++.....+.+. ..-..|+|+.|+
T Consensus 13 ~C~~p~~~~~~mI~CD~-~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 13 ICTNEVNDDQDAILCEA-SCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCM 64 (65)
T ss_dssp TTCSBCCTTSCEEEBTT-TTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHH
T ss_pred cCCCccCCCCCeEeccc-CccccCchhccCCCHHHHHHhhccCCCcEECcCcc
Confidence 45443 23578999992 3999999999999754332221 112378888874
No 39
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=80.71 E-value=0.44 Score=40.90 Aligned_cols=49 Identities=27% Similarity=0.508 Sum_probs=36.6
Q ss_pred cCCCCC--CCCCCceeeCCCccccccccccccCCCCccccccCCCCcccccccccccCCc
Q 003096 101 CPCGTS--LPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKRADP 158 (848)
Q Consensus 101 CiCGSS--l~s~~mIQC~~~~C~v~QH~sCv~Ip~Kp~~~ipvhPdvFyCe~CRLKr~dP 158 (848)
.+|+.. ...+.||.|+. |..+.|..|++++. +| ...+||+.|+.++.-|
T Consensus 20 ~vC~~~~s~~~~~ll~CD~--C~~~~H~~Cl~~~~-----vP--~g~W~C~~C~~~~~~p 70 (71)
T 2ku3_A 20 SICMDGESQNSNVILFCDM--CNLAVHQECYGVPY-----IP--EGQWLCRHCLQSRARP 70 (71)
T ss_dssp SSSCCCCCCSSSCEEECSS--SCCEEEHHHHTCSS-----CC--SSCCCCHHHHHHHHTT
T ss_pred CCCCCCCCCCCCCEEECCC--CCCccccccCCCCc-----CC--CCCcCCccCcCcCccC
Confidence 356544 35678999998 99999999999863 22 2578999998876443
No 40
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=79.81 E-value=0.23 Score=44.94 Aligned_cols=42 Identities=21% Similarity=0.406 Sum_probs=27.5
Q ss_pred CceeeCCCccccccccccccCCCCccccccC--CCCcccccccccc
Q 003096 111 SKIQCVDPRCLVQQHISCVIIPEKPMEEIRL--LPPLFFCETCRIK 154 (848)
Q Consensus 111 ~mIQC~~~~C~v~QH~sCv~Ip~Kp~~~ipv--hPdvFyCe~CRLK 154 (848)
.||+|+. |..|.|..|+.++..-..-+.. ....+.|+.|.-+
T Consensus 1 ~mi~c~~--c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~~ 44 (140)
T 2ku7_A 1 SMMQCGK--CDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTER 44 (140)
T ss_dssp CCCCCSC--CSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTTT
T ss_pred Ccccccc--CCCccCCcccccCHHHHHHHhhccccceeeCcccccc
Confidence 4899999 9999999999886311111111 1235778888544
No 41
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=79.33 E-value=1.1 Score=44.95 Aligned_cols=48 Identities=19% Similarity=0.247 Sum_probs=30.7
Q ss_pred ccccCCCCCCC-CCCceeeCCCccccccccccccCCCCccccccCCC-Cccc---ccccc
Q 003096 98 KIFCPCGTSLP-SESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLP-PLFF---CETCR 152 (848)
Q Consensus 98 ~vRCiCGSSl~-s~~mIQC~~~~C~v~QH~sCv~Ip~Kp~~~ipvhP-dvFy---Ce~CR 152 (848)
...|.||.--. ...|+||.. |..|.|..|+.....++ .| +.|| |..|.
T Consensus 5 ~~yCYCG~~~~~~~~mLqC~~--C~qWFH~~Cl~~~~~~~-----lp~~~fY~F~C~~C~ 57 (177)
T 3rsn_A 5 AGSVDEENGRQLGEVELQCGI--CTKWFTADTFGIDTSSC-----LPFMTNYSFHCNVCH 57 (177)
T ss_dssp ------CTTCCTTSCEEECTT--TCCEEEGGGGTCCCTTC-----CTTCCSEEEECTTTS
T ss_pred eeEEEcCCCCCCCceeEeecc--ccceecHHHhcccccCc-----cccceeEEEEccccC
Confidence 45799987433 678999998 99999999998654433 23 4444 88884
No 42
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=79.08 E-value=1.2 Score=35.10 Aligned_cols=45 Identities=20% Similarity=0.418 Sum_probs=32.9
Q ss_pred CCCCCCCCCCceeeCCCccccccccccccCCCCccccccCCCCccccccccc
Q 003096 102 PCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRI 153 (848)
Q Consensus 102 iCGSSl~s~~mIQC~~~~C~v~QH~sCv~Ip~Kp~~~ipvhPdvFyCe~CRL 153 (848)
+|+.....+.||.|+. |..+.|..|+.++.. .+| ...++|+.|+-
T Consensus 5 vC~~~~~~~~ll~Cd~--C~~~~H~~Cl~p~l~---~~P--~g~W~C~~C~~ 49 (51)
T 1f62_A 5 VCRKKGEDDKLILCDE--CNKAFHLFCLRPALY---EVP--DGEWQCPACQP 49 (51)
T ss_dssp TTCCSSCCSCCEECTT--TCCEECHHHHCTTCC---SCC--SSCCSCTTTSC
T ss_pred CCCCCCCCCCEEECCC--CChhhCcccCCCCcC---CCC--CCcEECcCccc
Confidence 4555545678999998 999999999976532 222 24788999964
No 43
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=77.74 E-value=0.57 Score=41.63 Aligned_cols=53 Identities=25% Similarity=0.421 Sum_probs=38.4
Q ss_pred ccCCCCCC--CCCCceeeCCCccccccccccccCCCCccccccCCCCcccccccccccCCchhh
Q 003096 100 FCPCGTSL--PSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKRADPFWI 161 (848)
Q Consensus 100 RCiCGSSl--~s~~mIQC~~~~C~v~QH~sCv~Ip~Kp~~~ipvhPdvFyCe~CRLKr~dPFy~ 161 (848)
-++|+... ..+.||.|+. |..+.|..|++++. +| ...+||+.|+.+...+|.+
T Consensus 28 C~vC~~~~s~~~~~ll~CD~--C~~~fH~~Cl~p~~-----vP--~g~W~C~~C~~~~~~~~~~ 82 (88)
T 2l43_A 28 CSICMDGESQNSNVILFCDM--CNLAVHQECYGVPY-----IP--EGQWLCRHCLQSRARPALE 82 (88)
T ss_dssp CSSCCSSSSCSEEEEEECSS--SCCCCCHHHHTCSS-----CC--SSCCCCHHHHHHTTSCC--
T ss_pred CCcCCCCCCCCCCCEEECCC--CCchhhcccCCCCc-----cC--CCceECccccCccchhhhh
Confidence 34676543 4568999998 99999999999863 22 2578999999887666554
No 44
>1kcf_A Hypothetical 30.2 KD protein C25G10.02 in chromosome I; beta-alpha-beta motif, RUVC resolvase family, hydrolase; 2.30A {Schizosaccharomyces pombe} SCOP: a.140.2.1 c.55.3.7
Probab=72.11 E-value=2.5 Score=44.44 Aligned_cols=33 Identities=24% Similarity=0.521 Sum_probs=30.4
Q ss_pred hhcCHHHHHHHHHHcCCCCCCCHHHHHHHHHHh
Q 003096 13 VNFRMKELKDVLTKLGLPKQGKKQDLVDRIFHQ 45 (848)
Q Consensus 13 ~sFRV~ELk~lL~~lGl~KsGrKqEL~dRil~l 45 (848)
..++++.||.|+...|++.+|+|.+|++|+.+.
T Consensus 2 ~~lk~~~L~~l~~~~G~~~sg~K~~l~~rl~~~ 34 (258)
T 1kcf_A 2 ATVKLSFLQHICKLTGLSRSGRKDELLRRIVDS 34 (258)
T ss_dssp -CCCHHHHHHHHHHTTCCCCSCTTHHHHHHHHC
T ss_pred CCCcHHHHHHHHHHhCCCCCCcHHHHHHHHHhc
Confidence 467899999999999999999999999999986
No 45
>2do5_A Splicing factor 3B subunit 2; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=69.57 E-value=4.5 Score=33.30 Aligned_cols=32 Identities=31% Similarity=0.580 Sum_probs=28.2
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHhcC
Q 003096 16 RMKELKDVLTKLGLPKQGKKQDLVDRIFHQLS 47 (848)
Q Consensus 16 RV~ELk~lL~~lGl~KsGrKqEL~dRil~lL~ 47 (848)
.-.|||.-|..+|-+.+|.+.||++|+..+..
T Consensus 12 ~~~ELQaKLaE~GAPi~g~REElvdRLk~Y~~ 43 (58)
T 2do5_A 12 AAQELQAKLAEIGAPIQGNREELVERLQSYTR 43 (58)
T ss_dssp CHHHHHHHHHHHTCCCCSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHhCCcccccHHHHHHHHHHHhh
Confidence 34799999999999999999999999887643
No 46
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=67.77 E-value=4 Score=33.66 Aligned_cols=47 Identities=19% Similarity=0.481 Sum_probs=34.3
Q ss_pred cccc-CCCCCCCCCCceeeCCCccccccccccccCCCCccccccCCCCcccccccccc
Q 003096 98 KIFC-PCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIK 154 (848)
Q Consensus 98 ~vRC-iCGSSl~s~~mIQC~~~~C~v~QH~sCv~Ip~Kp~~~ipvhPdvFyCe~CRLK 154 (848)
...| +|+. .+.||.|+. |..+.|..|+.++.. .+| ...++|+.|+-+
T Consensus 11 ~~~C~vC~~---~g~ll~CD~--C~~~fH~~Cl~p~l~---~~p--~g~W~C~~C~~~ 58 (61)
T 2l5u_A 11 QDYCEVCQQ---GGEIILCDT--CPRAYHMVCLDPDME---KAP--EGKWSCPHCEKE 58 (61)
T ss_dssp CSSCTTTSC---CSSEEECSS--SSCEEEHHHHCTTCC---SCC--CSSCCCTTGGGG
T ss_pred CCCCccCCC---CCcEEECCC--CChhhhhhccCCCCC---CCC--CCceECcccccc
Confidence 3456 4765 468999997 999999999998632 222 357899999754
No 47
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=64.37 E-value=3.8 Score=34.86 Aligned_cols=47 Identities=23% Similarity=0.610 Sum_probs=34.6
Q ss_pred CCCCCCCCCCceeeCCCccccccccccccCCCCccccccCCCCcccccccccc
Q 003096 102 PCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIK 154 (848)
Q Consensus 102 iCGSSl~s~~mIQC~~~~C~v~QH~sCv~Ip~Kp~~~ipvhPdvFyCe~CRLK 154 (848)
+|+.....+.||.|+. |..+.|..|+..|.. .+|. ...++|+.|+-+
T Consensus 23 ~C~~~~~~~~ll~CD~--C~~~yH~~Cl~Ppl~---~~P~-g~~W~C~~C~~~ 69 (70)
T 3asl_A 23 LCGGRQDPDKQLMCDE--CDMAFHIYCLDPPLS---SVPS-EDEWYCPECRND 69 (70)
T ss_dssp TTCCCSCGGGEEECTT--TCCEEEGGGSSSCCS---SCCS-SSCCCCTTTSCC
T ss_pred CCCCcCCCCCEEEcCC--CCCceecccCCCCcC---CCCC-CCCcCCcCccCc
Confidence 5666666788999998 999999999987533 2321 127889999754
No 48
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=63.51 E-value=2.5 Score=37.70 Aligned_cols=48 Identities=25% Similarity=0.604 Sum_probs=36.0
Q ss_pred cc-CCCCCCCCCCceeeCCCccccccccccccCCCCccccccCCCCcccccccccc
Q 003096 100 FC-PCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIK 154 (848)
Q Consensus 100 RC-iCGSSl~s~~mIQC~~~~C~v~QH~sCv~Ip~Kp~~~ipvhPdvFyCe~CRLK 154 (848)
.| +|+.......||.|+. |..+.|..|+.+|.. .+| ...+||+.|+.+
T Consensus 18 ~C~vC~~~~~~~~ll~CD~--C~~~~H~~Cl~Ppl~---~~P--~g~W~C~~C~~~ 66 (92)
T 2e6r_A 18 ICQVCSRGDEDDKLLFCDG--CDDNYHIFCLLPPLP---EIP--RGIWRCPKCILA 66 (92)
T ss_dssp CCSSSCCSGGGGGCEECTT--TCCEECSSSSSSCCS---SCC--SSCCCCHHHHHH
T ss_pred CCccCCCcCCCCCEEEcCC--CCchhccccCCCCcc---cCC--CCCcCCccCcCc
Confidence 45 6776554567999998 999999999987542 232 257899999775
No 49
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=62.33 E-value=6.1 Score=34.30 Aligned_cols=45 Identities=24% Similarity=0.690 Sum_probs=33.4
Q ss_pred CCCCCCCCCCceeeCCCccccccccccccCCCCccccccCCCCcccccccc
Q 003096 102 PCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCR 152 (848)
Q Consensus 102 iCGSSl~s~~mIQC~~~~C~v~QH~sCv~Ip~Kp~~~ipvhPdvFyCe~CR 152 (848)
+|+.....+.||.|+. |....|..|+.+|.. .+|. ...++|+.|+
T Consensus 31 vC~~~~~~~~ll~CD~--C~~~yH~~Cl~Ppl~---~~P~-g~~W~C~~C~ 75 (77)
T 2e6s_A 31 VCGGKHEPNMQLLCDE--CNVAYHIYCLNPPLD---KVPE-EEYWYCPSCK 75 (77)
T ss_dssp SSCCCCCSTTEEECSS--SCCEEETTSSSSCCS---SCCC-SSCCCCTTTC
T ss_pred CcCCcCCCCCEEEcCC--CCccccccccCCCcc---CCCC-CCCcCCcCcc
Confidence 4776666789999998 999999999987532 2221 1268899986
No 50
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=58.80 E-value=6.5 Score=40.75 Aligned_cols=46 Identities=24% Similarity=0.620 Sum_probs=30.1
Q ss_pred CCCCCCCCCCceeeCCCccccccccccccCCCCccccccCCCCccccccccc
Q 003096 102 PCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRI 153 (848)
Q Consensus 102 iCGSSl~s~~mIQC~~~~C~v~QH~sCv~Ip~Kp~~~ipvhPdvFyCe~CRL 153 (848)
+|+.....+.|+.|+. |....|..|+.+|.. .+|. ...++|+.|+-
T Consensus 179 vC~~~~~~~~lL~CD~--C~~~yH~~CL~PPL~---~vP~-G~~W~Cp~C~~ 224 (226)
T 3ask_A 179 LCGGRQDPDKQLMCDE--CDMAFHIYCLDPPLS---SVPS-EDEWYCPECRN 224 (226)
T ss_dssp SSCCCCC--CCEECSS--SCCEECSCC--CCCC---SCCS-SSCCCCGGGC-
T ss_pred CCCCCCCCCCeEEcCC--CCcceeCccCCCCcc---cCCC-CCCCCCcCCcC
Confidence 4666656788999998 999999999987643 2221 12689999964
No 51
>1a62_A RHO; transcription termination, termination, RNA binding domain, transcription regulation, OB fold, F1-ATPase; 1.55A {Escherichia coli BL21} SCOP: a.140.3.1 b.40.4.5 PDB: 1a63_A 2a8v_A 1a8v_A
Probab=58.33 E-value=10 Score=35.86 Aligned_cols=34 Identities=32% Similarity=0.435 Sum_probs=29.9
Q ss_pred HhhcCHHHHHHHHHHcCCCCCC--CHHHHHHHHHHh
Q 003096 12 LVNFRMKELKDVLTKLGLPKQG--KKQDLVDRIFHQ 45 (848)
Q Consensus 12 l~sFRV~ELk~lL~~lGl~KsG--rKqEL~dRil~l 45 (848)
|....+.||+.+...+|+.... ||+||+.+|+..
T Consensus 6 Lk~~~~~eL~eiAk~LgI~~~s~mrKqeLI~~IL~~ 41 (130)
T 1a62_A 6 LKNTPVSELITLGENMGLENLARMRKQDIIFAILKQ 41 (130)
T ss_dssp HHTSCHHHHHHHHHTTTCCCCTTSCHHHHHHHHHHH
T ss_pred HhhCCHHHHHHHHHHcCCCCccccCHHHHHHHHHHH
Confidence 4677999999999999999887 999999888763
No 52
>2riq_A Poly [ADP-ribose] polymerase 1; Zn-binding domain, Zn ribbon, Zn finger, ADP-ribosylation, D damage, DNA repair, DNA-binding, glycosyltransferase; 1.70A {Homo sapiens} PDB: 2jvn_A
Probab=57.37 E-value=16 Score=36.14 Aligned_cols=43 Identities=16% Similarity=0.283 Sum_probs=37.3
Q ss_pred hHHHHHHHHhh-cCHHHHHHHHHHcCCCCCCCHHHHHHHHHHhc
Q 003096 4 HVLNLQGKLVN-FRMKELKDVLTKLGLPKQGKKQDLVDRIFHQL 46 (848)
Q Consensus 4 ~~~~lk~ml~s-FRV~ELk~lL~~lGl~KsGrKqEL~dRil~lL 46 (848)
.+-++|+.|.. +...||+.+|..-+...+|-+.+|++|+...+
T Consensus 30 ~lw~~rD~L~~~ls~~eLk~lL~~N~q~~~g~~~~ll~r~ADgm 73 (160)
T 2riq_A 30 LIWNIKDELKKVCSTNDLKELLIFNKQQVPSGESAILDRVADGM 73 (160)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHTTCCCCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 45578899976 99999999999999988899999999987654
No 53
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=54.17 E-value=7.1 Score=33.96 Aligned_cols=45 Identities=24% Similarity=0.654 Sum_probs=32.5
Q ss_pred CCCCCCCCCCceeeCCCccccccccccccCCCCccccccCCCCcccccccc
Q 003096 102 PCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCR 152 (848)
Q Consensus 102 iCGSSl~s~~mIQC~~~~C~v~QH~sCv~Ip~Kp~~~ipvhPdvFyCe~CR 152 (848)
+|+.....+.||.|+. |....|..|+..|.. .+|. .+.++|+.|+
T Consensus 31 vC~~~~d~~~ll~CD~--C~~~yH~~Cl~PpL~---~~P~-g~~W~C~~C~ 75 (77)
T 3shb_A 31 LCGGRQDPDKQLMCDE--CDMAFHIYCLDPPLS---SVPS-EDEWYCPECR 75 (77)
T ss_dssp TTCCCSCGGGEEECTT--TCCEEETTTSSSCCS---SCCS-SSCCCCTTTC
T ss_pred ccCCCCCCcceeEeCC--CCCccCcccCCCccc---CCCC-CCceECcCcc
Confidence 3555555678999998 999999999987633 2322 2338899986
No 54
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=52.30 E-value=8.5 Score=32.07 Aligned_cols=44 Identities=25% Similarity=0.546 Sum_probs=32.9
Q ss_pred CCCCCCCCCCceeeCCCccccccccccccCCCCccccccCCCCccccccccccc
Q 003096 102 PCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKR 155 (848)
Q Consensus 102 iCGSSl~s~~mIQC~~~~C~v~QH~sCv~Ip~Kp~~~ipvhPdvFyCe~CRLKr 155 (848)
+|+. .+.||.|+. |..+.|..|+.++.. .+| ...++|+.|.-++
T Consensus 13 vC~~---~g~ll~CD~--C~~~fH~~Cl~ppl~---~~P--~g~W~C~~C~~~~ 56 (66)
T 1xwh_A 13 VCRD---GGELICCDG--CPRAFHLACLSPPLR---EIP--SGTWRCSSCLQAT 56 (66)
T ss_dssp SSSC---CSSCEECSS--CCCEECTTTSSSCCS---SCC--SSCCCCHHHHHTC
T ss_pred cCCC---CCCEEEcCC--CChhhcccccCCCcC---cCC--CCCeECccccCcc
Confidence 4664 367999998 999999999987533 222 2578999997664
No 55
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=51.59 E-value=16 Score=38.28 Aligned_cols=47 Identities=19% Similarity=0.275 Sum_probs=40.3
Q ss_pred hhHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCHHHHHHHHHHhcCch
Q 003096 3 IHVLNLQGKLVNFRMKELKDVLTKLGLPKQGKKQDLVDRIFHQLSDE 49 (848)
Q Consensus 3 ~~~~~lk~ml~sFRV~ELk~lL~~lGl~KsGrKqEL~dRil~lL~~~ 49 (848)
.+++.+..+++.+.+.||+..|..+|++..|.|..|..|+..+.+..
T Consensus 17 ~~~~~~~~~~~~m~~~~l~~~l~~~~l~~~g~~~~l~~~l~~~~~~~ 63 (299)
T 1zbh_A 17 KEIAITNGCINRMSKEELRAKLSEFKLETRGVKDVLKKRLKNYYKKQ 63 (299)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHTTCCCCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhhchhhhccHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHh
Confidence 35667888899999999999999999999999999999877665543
No 56
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=51.53 E-value=5 Score=33.03 Aligned_cols=50 Identities=16% Similarity=0.323 Sum_probs=35.0
Q ss_pred CCCCC--CCCCCceeeCCCccccccccccccCCCCccccccCCCCccccccccccc
Q 003096 102 PCGTS--LPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKR 155 (848)
Q Consensus 102 iCGSS--l~s~~mIQC~~~~C~v~QH~sCv~Ip~Kp~~~ipvhPdvFyCe~CRLKr 155 (848)
+|+.. ...+.||.|+. |....|..|+.++... +.++ ....+||..|+.+.
T Consensus 11 vC~~~~~~~~~~ll~Cd~--C~~~~H~~C~~p~l~~-~~~~-p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 11 ICQEEYSEAPNEMVICDK--CGQGYHQLCHTPHIDS-SVID-SDEKWLCRQCVFAT 62 (66)
T ss_dssp SSCCCCCBTTBCEEECSS--SCCEEETTTSSSCCCH-HHHH-SSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCEEECCC--CChHHHhhhCCCcccc-cccC-CCCCEECCCCcCcc
Confidence 56654 33588999998 9999999999986431 1121 12578899998763
No 57
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=50.70 E-value=11 Score=34.11 Aligned_cols=47 Identities=23% Similarity=0.386 Sum_probs=35.3
Q ss_pred CCCCCCCCCCceeeCCCccccccccccccCCCCccccccCCCCccccccccccc
Q 003096 102 PCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKR 155 (848)
Q Consensus 102 iCGSSl~s~~mIQC~~~~C~v~QH~sCv~Ip~Kp~~~ipvhPdvFyCe~CRLKr 155 (848)
+|+.......|+.|+. |..+.|..|+..+.+ .+|. ..++|+.|+-.+
T Consensus 59 ~C~~~~~~~~ll~Cd~--C~~~yH~~Cl~ppl~---~~P~--g~W~C~~C~~c~ 105 (111)
T 2ysm_A 59 NCKQSGEDSKMLVCDT--CDKGYHTFCLQPVMK---SVPT--NGWKCKNCRICI 105 (111)
T ss_dssp TTCCCSCCTTEEECSS--SCCEEEGGGSSSCCS---SCCS--SCCCCHHHHCCS
T ss_pred ccCccCCCCCeeECCC--CCcHHhHHhcCCccc---cCCC--CCcCCcCCcCcC
Confidence 4666555567999998 999999999987533 2332 578999998764
No 58
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=49.70 E-value=12 Score=30.50 Aligned_cols=43 Identities=26% Similarity=0.596 Sum_probs=31.8
Q ss_pred CCCCCCCCCCceeeCCCccccccccccccCCCCccccccCCCCcccccccccc
Q 003096 102 PCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIK 154 (848)
Q Consensus 102 iCGSSl~s~~mIQC~~~~C~v~QH~sCv~Ip~Kp~~~ipvhPdvFyCe~CRLK 154 (848)
+|+. .+.||.|+. |..+.|..|+.++.+ .+| ...++|+.|+-+
T Consensus 10 vC~~---~g~ll~Cd~--C~~~fH~~Cl~ppl~---~~p--~g~W~C~~C~~~ 52 (60)
T 2puy_A 10 VCRK---SGQLLMCDT--CSRVYHLDCLDPPLK---TIP--KGMWICPRCQDQ 52 (60)
T ss_dssp TTCC---CSSCEECSS--SSCEECGGGSSSCCS---SCC--CSCCCCHHHHHH
T ss_pred CCCC---CCcEEEcCC--CCcCEECCcCCCCcC---CCC--CCceEChhccCh
Confidence 4654 368999997 999999999997543 222 257889999654
No 59
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=49.68 E-value=17 Score=29.81 Aligned_cols=43 Identities=26% Similarity=0.553 Sum_probs=32.4
Q ss_pred CCCCCCCCCCceeeCCCccccccccccccCCCCccccccCCCCcccccccccc
Q 003096 102 PCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIK 154 (848)
Q Consensus 102 iCGSSl~s~~mIQC~~~~C~v~QH~sCv~Ip~Kp~~~ipvhPdvFyCe~CRLK 154 (848)
+|+. .+.||.|+. |....|..|+.++.. .+| ...+||+.|+-+
T Consensus 14 vC~~---~g~ll~Cd~--C~~~fH~~Cl~ppl~---~~p--~g~W~C~~C~~~ 56 (61)
T 1mm2_A 14 VCKD---GGELLCCDT--CPSSYHIHCLNPPLP---EIP--NGEWLCPRCTCP 56 (61)
T ss_dssp TTCC---CSSCBCCSS--SCCCBCSSSSSSCCS---SCC--SSCCCCTTTTTT
T ss_pred CCCC---CCCEEEcCC--CCHHHcccccCCCcC---cCC--CCccCChhhcCc
Confidence 4653 467999998 999999999987532 232 257899999766
No 60
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=47.43 E-value=18 Score=30.44 Aligned_cols=45 Identities=20% Similarity=0.517 Sum_probs=33.2
Q ss_pred cc-CCCCCCCCCCceeeCCCccccccccccccCCCCccccccCCCCcccccccccc
Q 003096 100 FC-PCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIK 154 (848)
Q Consensus 100 RC-iCGSSl~s~~mIQC~~~~C~v~QH~sCv~Ip~Kp~~~ipvhPdvFyCe~CRLK 154 (848)
+| +|+. .+.||.|+. |..+.|..|+..+.+. +| ...+||..|+-.
T Consensus 14 ~C~vC~~---~~~ll~Cd~--C~~~~H~~Cl~P~l~~---~P--~g~W~C~~C~~~ 59 (66)
T 2lri_C 14 RCGVCGD---GTDVLRCTH--CAAAFHWRCHFPAGTS---RP--GTGLRCRSCSGD 59 (66)
T ss_dssp CCTTTSC---CTTCEECSS--SCCEECHHHHCTTTCC---CC--SSSCCCTTTTTC
T ss_pred CcCCCCC---CCeEEECCC--CCCceecccCCCccCc---CC--CCCEECccccCC
Confidence 44 5653 467999998 9999999999876432 22 256899999865
No 61
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.99 E-value=14 Score=29.72 Aligned_cols=41 Identities=27% Similarity=0.645 Sum_probs=30.3
Q ss_pred CCCCCCCCCCceeeCCCccccccccccccCCCCccccccCCCCcccccccc
Q 003096 102 PCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCR 152 (848)
Q Consensus 102 iCGSSl~s~~mIQC~~~~C~v~QH~sCv~Ip~Kp~~~ipvhPdvFyCe~CR 152 (848)
+|+. .+.||.|+. |..+.|..|+.++.+. +| ...++|+.|+
T Consensus 14 vC~~---~g~ll~Cd~--C~~~~H~~Cl~ppl~~---~p--~g~W~C~~C~ 54 (56)
T 2yql_A 14 VCRK---SGQLLMCDT--CSRVYHLDCLDPPLKT---IP--KGMWICPRCQ 54 (56)
T ss_dssp SSCC---SSCCEECSS--SSCEECSSSSSSCCCS---CC--CSSCCCHHHH
T ss_pred cCCC---CCeEEEcCC--CCcceECccCCCCcCC---CC--CCceEChhhh
Confidence 4654 368999997 9999999999875432 22 2578898885
No 62
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=41.57 E-value=14 Score=33.49 Aligned_cols=42 Identities=19% Similarity=0.458 Sum_probs=30.0
Q ss_pred CCceeeCCCccccccccccccCCCCccccccCCCCcccccccccc
Q 003096 110 ESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIK 154 (848)
Q Consensus 110 ~~mIQC~~~~C~v~QH~sCv~Ip~Kp~~~ipvhPdvFyCe~CRLK 154 (848)
..|++|.. |..|.|..|+.++...+.. ...|+.|.|+.|+=+
T Consensus 73 ~~m~~C~~--C~~~~H~~C~~~~~~~~~~-~~~~~~~~C~~C~~~ 114 (117)
T 4bbq_A 73 KKLMECCI--CNEIVHPGCLQMDGEGLLN-EELPNCWECPKCYQE 114 (117)
T ss_dssp GSCEEETT--TCCEECGGGCCSCCCCEEC-SSSSSEEECTTTC--
T ss_pred cceEEeee--cCCeEECCCCCCCcccccc-ccCCCCeECCCCcCC
Confidence 55899998 9999999999886432110 235678999999754
No 63
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=40.98 E-value=15 Score=33.61 Aligned_cols=46 Identities=28% Similarity=0.467 Sum_probs=34.7
Q ss_pred CCCCCCCCCCceeeCCCccccccccccccCCCCccccccCCCCcccccccccc
Q 003096 102 PCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIK 154 (848)
Q Consensus 102 iCGSSl~s~~mIQC~~~~C~v~QH~sCv~Ip~Kp~~~ipvhPdvFyCe~CRLK 154 (848)
+|+.....+.||.|+. |..+.|..|+..|.. .+|. ..++|+.|+-+
T Consensus 63 ~C~~~~~~~~ll~Cd~--C~~~yH~~Cl~ppl~---~~P~--g~W~C~~C~~~ 108 (114)
T 2kwj_A 63 LCGTSENDDQLLFCDD--CDRGYHMYCLNPPVA---EPPE--GSWSCHLCWEL 108 (114)
T ss_dssp TTTCCTTTTTEEECSS--SCCEEETTTSSSCCS---SCCS--SCCCCHHHHHH
T ss_pred cccccCCCCceEEcCC--CCccccccccCCCcc---CCCC--CCeECccccch
Confidence 5777666788999998 999999999987532 2332 46889999654
No 64
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=39.55 E-value=12 Score=33.05 Aligned_cols=51 Identities=16% Similarity=0.398 Sum_probs=35.1
Q ss_pred CCCCCC--CCCCceeeCCCccccccccccccCCCCccccccCCCCccccccccccc
Q 003096 102 PCGTSL--PSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKR 155 (848)
Q Consensus 102 iCGSSl--~s~~mIQC~~~~C~v~QH~sCv~Ip~Kp~~~ipvhPdvFyCe~CRLKr 155 (848)
+|+... ..+.+|.|+. |....|..|+.++...+ .+.+....+||..|+.+.
T Consensus 21 vC~~~~~~~~~~ll~CD~--C~~~yH~~Cl~Ppl~~~-~~~~p~g~W~C~~C~~~~ 73 (88)
T 1wev_A 21 VCRQMTVASGNQLVECQE--CHNLYHQDCHKPQVTDK-EVNDPRLVWYCARCTRQM 73 (88)
T ss_dssp SSCCCCCCTTCCEEECSS--SCCEEETTTSSSCCCHH-HHHCTTCCCCCHHHHHHH
T ss_pred CCCCCCCCCCCceEECCC--CCCeEcCccCCCccccc-ccCCCCCCeeCccccchh
Confidence 565443 2478999998 99999999998864321 011223578899998763
No 65
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=38.34 E-value=46 Score=31.23 Aligned_cols=38 Identities=24% Similarity=0.425 Sum_probs=33.9
Q ss_pred HHHHhhcCHHHHHHHHHHcCCCCCC--CHHHHHHHHHHhc
Q 003096 9 QGKLVNFRMKELKDVLTKLGLPKQG--KKQDLVDRIFHQL 46 (848)
Q Consensus 9 k~ml~sFRV~ELk~lL~~lGl~KsG--rKqEL~dRil~lL 46 (848)
+..|+.++|++|++-|..-+++..| .|.||++=||...
T Consensus 73 ~~~l~~lkvkdL~~yL~~~~I~~~~c~EKedLv~lvl~~~ 112 (120)
T 1y02_A 73 REELMKMKVKDLRDYLSLHDISTEMCREKEELVLLVLGQQ 112 (120)
T ss_dssp HHHHHTSCHHHHHHHHHHTTCCCTTCCSHHHHHHHHHHTC
T ss_pred HHHHhcccHHHHHHHHHhCCCCcccceeHHHHHHHHHhcC
Confidence 4678999999999999999999999 6999999887765
No 66
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=38.12 E-value=22 Score=32.75 Aligned_cols=38 Identities=16% Similarity=0.372 Sum_probs=28.2
Q ss_pred CCCCceeeCCCccccccccccccCCCCccccccCCCCcccccccc
Q 003096 108 PSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCR 152 (848)
Q Consensus 108 ~s~~mIQC~~~~C~v~QH~sCv~Ip~Kp~~~ipvhPdvFyCe~CR 152 (848)
.++.||.|++..|..+.|..|+++...| ...+||+.|+
T Consensus 23 ~~G~ll~CD~~~Cp~~fH~~Cl~L~~~P-------~g~W~Cp~c~ 60 (107)
T 4gne_A 23 DGGELVMCDKKDCPKAYHLLCLNLTQPP-------YGKWECPWHQ 60 (107)
T ss_dssp CCSEEEECCSTTCCCEECTGGGTCSSCC-------SSCCCCGGGB
T ss_pred CCCcEeEECCCCCCcccccccCcCCcCC-------CCCEECCCCC
Confidence 3578999996569999999999864322 2467888764
No 67
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=37.98 E-value=28 Score=33.87 Aligned_cols=40 Identities=20% Similarity=0.425 Sum_probs=30.6
Q ss_pred CCCceeeCCCccccccccccccCCCCccccccCCCCccccccccccc
Q 003096 109 SESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKR 155 (848)
Q Consensus 109 s~~mIQC~~~~C~v~QH~sCv~Ip~Kp~~~ipvhPdvFyCe~CRLKr 155 (848)
++.++.|+. |..+.|..|+..+.. .+| ...++|+.|+-+.
T Consensus 13 ~g~ll~Cd~--C~~~~H~~C~~p~l~---~~p--~~~W~C~~C~~~~ 52 (184)
T 3o36_A 13 GGELLCCEK--CPKVFHLSCHVPTLT---NFP--SGEWICTFCRDLS 52 (184)
T ss_dssp CSSCEECSS--SSCEECTTTSSSCCS---SCC--SSCCCCTTTSCSS
T ss_pred CCeeeecCC--CCcccCccccCCCCC---CCC--CCCEECccccCcc
Confidence 366999998 999999999977532 222 2468999998773
No 68
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=33.98 E-value=20 Score=35.68 Aligned_cols=40 Identities=18% Similarity=0.381 Sum_probs=30.5
Q ss_pred CCCceeeCCCccccccccccccCCCCccccccCCCCccccccccccc
Q 003096 109 SESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKR 155 (848)
Q Consensus 109 s~~mIQC~~~~C~v~QH~sCv~Ip~Kp~~~ipvhPdvFyCe~CRLKr 155 (848)
++.++-|+. |..+.|..|+.++.. .+| ...++|+.|+-+.
T Consensus 16 ~g~ll~Cd~--C~~~~H~~Cl~p~l~---~~p--~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 16 GGDLLCCEK--CPKVFHLTCHVPTLL---SFP--SGDWICTFCRDIG 55 (207)
T ss_dssp CEEEEECSS--SSCEECTTTSSSCCS---SCC--SSCCCCTTTSCSS
T ss_pred CCceEEcCC--CCCccCCccCCCCCC---CCC--CCCEEeCceeCcc
Confidence 356999998 999999999987532 222 2568999998763
No 69
>2kqs_B Death domain-associated protein 6; SUMO, SIM, DAXX, nucleus, phosphoprotein, UBL conjugation PA apoptosis, transcription, transcription regulation; NMR {Homo sapiens}
Probab=29.62 E-value=17 Score=26.07 Aligned_cols=14 Identities=50% Similarity=0.719 Sum_probs=11.0
Q ss_pred CCccEEEecCCCcc
Q 003096 589 GDTDIIVLSDSEED 602 (848)
Q Consensus 589 ~~~~~ivlsds~~~ 602 (848)
.--+|||||||+..
T Consensus 11 dP~evivlsds~~~ 24 (26)
T 2kqs_B 11 DPEEIIVLSDSDXX 24 (26)
T ss_pred CcceEEEccccccc
Confidence 44579999999864
No 70
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=28.52 E-value=50 Score=29.98 Aligned_cols=46 Identities=20% Similarity=0.551 Sum_probs=32.2
Q ss_pred CCCCC-CCCCCceeeCCCccccccccccccCCCCccccccCCCCcccccccccc
Q 003096 102 PCGTS-LPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIK 154 (848)
Q Consensus 102 iCGSS-l~s~~mIQC~~~~C~v~QH~sCv~Ip~Kp~~~ipvhPdvFyCe~CRLK 154 (848)
+|+.. ...+.++.|+. |....|..|+..+.. .+|. ..++|+.|+-|
T Consensus 66 vC~~~~~~~~~ll~Cd~--C~~~yH~~Cl~p~l~---~~P~--~~W~C~~C~~k 112 (112)
T 3v43_A 66 SCRDQGKNADNMLFCDS--CDRGFHMECCDPPLT---RMPK--GMWICQICRPR 112 (112)
T ss_dssp TTCCCCCTTCCCEECTT--TCCEECGGGCSSCCS---SCCS--SCCCCTTTSCC
T ss_pred cccCcCCCccceEEcCC--CCCeeecccCCCCCC---CCCC--CCeECCCCCCc
Confidence 45543 23467999998 999999999976532 2332 46889999743
No 71
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=24.63 E-value=54 Score=32.43 Aligned_cols=39 Identities=15% Similarity=0.483 Sum_probs=29.9
Q ss_pred CCCceeeCCCccccccccccccCCCCccccccCCCCcccccccccc
Q 003096 109 SESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIK 154 (848)
Q Consensus 109 s~~mIQC~~~~C~v~QH~sCv~Ip~Kp~~~ipvhPdvFyCe~CRLK 154 (848)
++.++.|+. |....|..|+..+.+ .+| ...++|..|+-+
T Consensus 11 ~g~ll~Cd~--C~~~~H~~Cl~p~l~---~~p--~g~W~C~~C~~~ 49 (189)
T 2ro1_A 11 PGDLVMCNQ--CEFCFHLDCHLPALQ---DVP--GEEWSCSLCHVL 49 (189)
T ss_dssp CSSCCCCTT--TCCBCCSTTSTTCCS---SCC--CTTCCTTTTSCS
T ss_pred CCceeECCC--CCchhccccCCCCcc---cCC--CCCCCCcCccCC
Confidence 456899998 999999999976533 222 356889999877
No 72
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=22.17 E-value=86 Score=28.06 Aligned_cols=39 Identities=15% Similarity=0.483 Sum_probs=29.8
Q ss_pred CCCceeeCCCccccccccccccCCCCccccccCCCCcccccccccc
Q 003096 109 SESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIK 154 (848)
Q Consensus 109 s~~mIQC~~~~C~v~QH~sCv~Ip~Kp~~~ipvhPdvFyCe~CRLK 154 (848)
++.++.|+. |....|..|+.++.. .+| ...++|+.|+..
T Consensus 34 ~g~LL~CD~--C~~~fH~~Cl~PpL~---~~P--~g~W~C~~C~~~ 72 (88)
T 1fp0_A 34 PGDLVMCNQ--CEFCFHLDCHLPALQ---DVP--GEEWSCSLCHVL 72 (88)
T ss_dssp SSCCEECTT--SSCEECTTSSSTTCC---CCC--SSSCCCCSCCCC
T ss_pred CCCEEECCC--CCCceecccCCCCCC---CCc--CCCcCCccccCC
Confidence 367999998 999999999976532 232 257889999865
Done!