BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003098
(848 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CXK|A Chain A, Crystal Structure Of The Tig Domain Of Human Calmodulin-
Binding Transcription Activator 1 (Camta1)
pdb|2CXK|B Chain B, Crystal Structure Of The Tig Domain Of Human Calmodulin-
Binding Transcription Activator 1 (Camta1)
pdb|2CXK|C Chain C, Crystal Structure Of The Tig Domain Of Human Calmodulin-
Binding Transcription Activator 1 (Camta1)
pdb|2CXK|D Chain D, Crystal Structure Of The Tig Domain Of Human Calmodulin-
Binding Transcription Activator 1 (Camta1)
pdb|2CXK|E Chain E, Crystal Structure Of The Tig Domain Of Human Calmodulin-
Binding Transcription Activator 1 (Camta1)
Length = 95
Score = 63.2 bits (152), Expect = 6e-10, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 51/88 (57%), Gaps = 6/88 (6%)
Query: 298 ITDVSPAWAFSNEKTKILVTGFFHKDCLHLSKSNMFCVCGEVRVPAEFVQAGVYRCFLPP 357
+TD SP W++ K+L+TG + + + +N C+ ++ VPA +Q GV RC+ P
Sbjct: 9 VTDYSPEWSYPEGGVKVLITGPWQE-----ASNNYSCLFDQISVPASLIQPGVLRCYCPA 63
Query: 358 HSPGLFLLYMSLDGHKPISQVLNFEYRS 385
H GL L ++ + ++ IS + FEY+S
Sbjct: 64 HDTGLVTLQVAFN-NQIISNSVVFEYKS 90
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 6/107 (5%)
Query: 490 EGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKM 549
+G+ D G+ +HL A G+ + L G + +D G T LH AA G +++
Sbjct: 59 QGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEV 118
Query: 550 VVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQA 596
V LLS GA PN +D + P D+A + G + + L +Q
Sbjct: 119 VKLLLSQGADPN-TSDSDGRTP-----LDLAREHGNEEVVKLLEKQG 159
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 35/71 (49%)
Query: 491 GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMV 550
G+ D G+ +HL A G+ + L G + +D G T LH AA G +++V
Sbjct: 27 GADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVV 86
Query: 551 VDLLSAGAKPN 561
LLS GA PN
Sbjct: 87 KLLLSQGADPN 97
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 54/116 (46%), Gaps = 6/116 (5%)
Query: 481 KEWLLERVVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHW 540
KE + + +G+ D G+ +H A G+ + L G + +D G T LH+
Sbjct: 50 KEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHY 109
Query: 541 AAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQA 596
AA G +++V LLS GA PN +D + P D+A + G + + L +Q
Sbjct: 110 AAENGHKEIVKLLLSKGADPN-TSDSDGRTP-----LDLAREHGNEEIVKLLEKQG 159
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 40/81 (49%)
Query: 481 KEWLLERVVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHW 540
K+ + + + G+ D G+ +H A G+ + L G + +D G T LH+
Sbjct: 17 KDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHY 76
Query: 541 AAYYGREKMVVDLLSAGAKPN 561
AA G +++V LLS GA PN
Sbjct: 77 AAENGHKEIVKLLLSKGADPN 97
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 45.8 bits (107), Expect = 1e-04, Method: Composition-based stats.
Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 6/102 (5%)
Query: 491 GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMV 550
G+ D G +HL A G+ + + G ++ D+ GWT LH AA G+ ++V
Sbjct: 62 GADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIV 121
Query: 551 VDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFL 592
LL GA D +Q+ GL A DI+ +G + LA L
Sbjct: 122 EVLLKHGA------DVNAQDALGLTAFDISINQGQEDLAEIL 157
>pdb|2IX7|C Chain C, Structure Of Apo-Calmodulin Bound To Unconventional Myosin
V
Length = 58
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/49 (46%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 696 KKMAAAARIQHRFRSWKVRKEFLNMRRQAIKIQAAFRGFQVRKQYGKIL 744
K AA RIQ R W +RK +L M+R AI +Q RG+Q R Y K L
Sbjct: 3 KLRAACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRGYQAR-CYAKFL 50
>pdb|2DFS|A Chain A, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|M Chain M, 3-D Structure Of Myosin-V Inhibited State
Length = 1080
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 24/39 (61%)
Query: 699 AAAARIQHRFRSWKVRKEFLNMRRQAIKIQAAFRGFQVR 737
AA RIQ R W +RK+++ MRR AI IQ RG Q R
Sbjct: 769 AACIRIQKTIRGWLMRKKYMRMRRAAITIQRYVRGHQAR 807
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 681 AALKIQHAFRNFEVR------KKMAAAARIQHRFRSWKVRKEFLNMRRQAIKIQAAFRGF 734
AA+ IQ R + R ++ AA IQ R + VRK + MR I +QA RG+
Sbjct: 793 AAITIQRYVRGHQARCYATFLRRTRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGY 852
Query: 735 QVRKQYGKIL 744
VR +Y +L
Sbjct: 853 LVRNKYQMML 862
Score = 34.3 bits (77), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 7/101 (6%)
Query: 681 AALKIQHAFRNFEVRKKMA----AAARIQHRFRSWKVRKEFLNMRRQ--AIKIQAAFRGF 734
AA+ IQ R + VRK+ A +Q R + VR ++ M R+ +I IQ RG+
Sbjct: 818 AAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGW 877
Query: 735 QVRKQYGKILWSVGVLEKAILRWRLKRKGFRGLQVDRVEVE 775
R Y + L ++ L+ R KR+ + L+++ VE
Sbjct: 878 LARVHYHRTLKAIVYLQCCYRRMMAKRE-LKKLKIEARSVE 917
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 44.3 bits (103), Expect = 3e-04, Method: Composition-based stats.
Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 6/106 (5%)
Query: 491 GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMV 550
G+ D G +HL A G+ + + +G ++ +DK G+T LH AA G ++V
Sbjct: 58 GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIV 117
Query: 551 VDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQA 596
LL AGA D +Q+ G D+A ++G + +A L + A
Sbjct: 118 EVLLKAGA------DVNAQDKFGKTPFDLAIREGHEDIAEVLQKAA 157
Score = 38.9 bits (89), Expect = 0.014, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 488 VVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGRE 547
+ G+ D G +HL A G+ + + +G ++ +DK G+T LH AA G
Sbjct: 22 MANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHL 81
Query: 548 KMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKG 584
++V LL AGA D +++ G +A+++G
Sbjct: 82 EIVEVLLKAGA------DVNAKDKDGYTPLHLAAREG 112
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 44.3 bits (103), Expect = 3e-04, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 6/97 (6%)
Query: 488 VVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGRE 547
+ G+ +D G +HL A +G+ + + G ++ RD GWT LH AA G
Sbjct: 34 MANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAADNGHL 93
Query: 548 KMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKG 584
++V LL GA D +Q+ GL +A+ +G
Sbjct: 94 EIVEVLLKYGA------DVNAQDAYGLTPLHLAADRG 124
Score = 39.7 bits (91), Expect = 0.008, Method: Composition-based stats.
Identities = 32/104 (30%), Positives = 47/104 (45%), Gaps = 6/104 (5%)
Query: 491 GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMV 550
G+ D G +HL A G+ + + G ++ +D YG T LH AA G ++V
Sbjct: 70 GADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIV 129
Query: 551 VDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSE 594
LL GA D +Q+ G A DI+ G + LA L +
Sbjct: 130 EVLLKHGA------DVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 6/102 (5%)
Query: 491 GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMV 550
G+ D +G +HL A LG+ + + G ++ +D G T L+ AAY+G ++V
Sbjct: 58 GADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIV 117
Query: 551 VDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFL 592
LL GA D +Q+ G A DI+ G + LA L
Sbjct: 118 EVLLKHGA------DVNAQDKFGKTAFDISIDIGNEDLAEIL 153
Score = 38.5 bits (88), Expect = 0.014, Method: Composition-based stats.
Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 8/106 (7%)
Query: 488 VVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGRE 547
+ G+ YD +G+ +H+ A +G+ + + +G ++ D G T LH AA G
Sbjct: 22 MANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLGHL 81
Query: 548 KMVVDLLSAGAKPNLVTDPTSQNP-------GGLNAADIASKKGFD 586
++V LL GA N D T P G L ++ K G D
Sbjct: 82 EIVEVLLKYGADVN-AKDATGITPLYLAAYWGHLEIVEVLLKHGAD 126
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 43.9 bits (102), Expect = 4e-04, Method: Composition-based stats.
Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 6/104 (5%)
Query: 491 GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMV 550
G+ YD G +HL A G+ + + +G ++ +D G T LH AA G ++V
Sbjct: 70 GADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIV 129
Query: 551 VDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSE 594
LL GA D +Q+ G A DI+ G + LA L +
Sbjct: 130 EVLLKYGA------DVNAQDKFGKTAFDISINNGNEDLAEILQK 167
Score = 38.5 bits (88), Expect = 0.018, Method: Composition-based stats.
Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 6/97 (6%)
Query: 488 VVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGRE 547
+ G+ DV G +HL A G+ + + +G ++ D G T LH AA++G
Sbjct: 34 MANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHL 93
Query: 548 KMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKG 584
++V LL GA D +++ G+ +A+ +G
Sbjct: 94 EIVEVLLKNGA------DVNAKDDNGITPLHLAANRG 124
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 43.5 bits (101), Expect = 5e-04, Method: Composition-based stats.
Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 6/104 (5%)
Query: 491 GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMV 550
G+ D G +HL A+ G+ + + +G ++ D YG+T LH AA G ++V
Sbjct: 70 GADVNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIV 129
Query: 551 VDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSE 594
LL GA D +Q+ G A DI+ G + LA L +
Sbjct: 130 EVLLKYGA------DVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 38.1 bits (87), Expect = 0.023, Method: Composition-based stats.
Identities = 32/106 (30%), Positives = 46/106 (43%), Gaps = 8/106 (7%)
Query: 488 VVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGRE 547
+ G+ D G+ +HL A+ G+ + + G ++ DK G T LH AA YG
Sbjct: 34 MANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYGHL 93
Query: 548 KMVVDLLSAGAKPNLVTDPTSQNP-------GGLNAADIASKKGFD 586
++V LL GA N TD P G L ++ K G D
Sbjct: 94 EIVEVLLKNGADVN-ATDTYGFTPLHLAADAGHLEIVEVLLKYGAD 138
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 43.5 bits (101), Expect = 5e-04, Method: Composition-based stats.
Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 6/102 (5%)
Query: 491 GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMV 550
G+ D G +HL A G+ + + +G ++ +DK G+T LH AA G ++V
Sbjct: 70 GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIV 129
Query: 551 VDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFL 592
LL AGA D +Q+ G A DI+ G + LA L
Sbjct: 130 EVLLKAGA------DVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 38.5 bits (88), Expect = 0.014, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 488 VVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGRE 547
+ G+ D G +HL A G+ + + +G ++ +DK G+T LH AA G
Sbjct: 34 MANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHL 93
Query: 548 KMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKG 584
++V LL AGA D +++ G +A+++G
Sbjct: 94 EIVEVLLKAGA------DVNAKDKDGYTPLHLAAREG 124
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 43.5 bits (101), Expect = 5e-04, Method: Composition-based stats.
Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 6/104 (5%)
Query: 491 GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMV 550
G+ D+ G +HL A++G+ + + G ++ D +G T LH AA G ++V
Sbjct: 70 GADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIV 129
Query: 551 VDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSE 594
LL GA D +Q+ G A DI+ G + LA L +
Sbjct: 130 EVLLKHGA------DVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 33/76 (43%)
Query: 488 VVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGRE 547
+ G+ D G +HL A G+ + + G ++ D G T LH AA G
Sbjct: 34 MANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAALIGHL 93
Query: 548 KMVVDLLSAGAKPNLV 563
++V LL GA N V
Sbjct: 94 EIVEVLLKHGADVNAV 109
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 43.1 bits (100), Expect = 6e-04, Method: Composition-based stats.
Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 6/104 (5%)
Query: 491 GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMV 550
G+ D+ G +HL A++G+ + + G ++ D +G T LH AA G ++V
Sbjct: 70 GADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIV 129
Query: 551 VDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSE 594
LL GA D +Q+ G A DI+ G + LA L +
Sbjct: 130 EVLLKHGA------DVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 32.3 bits (72), Expect = 1.2, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 33/76 (43%)
Query: 488 VVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGRE 547
+ G+ D G +HL A G+ + + G ++ D G T LH AA G
Sbjct: 34 MANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAALIGHL 93
Query: 548 KMVVDLLSAGAKPNLV 563
++V LL GA N V
Sbjct: 94 EIVEVLLKHGADVNAV 109
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 52/121 (42%), Gaps = 6/121 (4%)
Query: 474 LTLKSKLKEWLLERVVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKY 533
L KL+E + + S T D + +H G+T + G+ ++ +D
Sbjct: 14 LAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA 73
Query: 534 GWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLS 593
GW+ LH AA GR+++V LL GA+ N V N G A+ K +A L
Sbjct: 74 GWSPLHIAASAGRDEIVKALLGKGAQVNAV------NQNGCTPLHYAASKNRHEIAVMLL 127
Query: 594 E 594
E
Sbjct: 128 E 128
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 478 SKLKEWLLERVVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTA 537
+++ E+LL+ G + D G +H+ A G + G ++ ++ G T
Sbjct: 54 TEIVEFLLQL---GVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTP 110
Query: 538 LHWAAYYGREKMVVDLLSAGAKPN 561
LH+AA R ++ V LL GA P+
Sbjct: 111 LHYAASKNRHEIAVMLLEGGANPD 134
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 52/121 (42%), Gaps = 6/121 (4%)
Query: 474 LTLKSKLKEWLLERVVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKY 533
L KL+E + + S T D + +H G+T + G+ ++ +D
Sbjct: 13 LAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA 72
Query: 534 GWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLS 593
GW+ LH AA GR+++V LL GA+ N V N G A+ K +A L
Sbjct: 73 GWSPLHIAASAGRDEIVKALLGKGAQVNAV------NQNGCTPLHYAASKNRHEIAVMLL 126
Query: 594 E 594
E
Sbjct: 127 E 127
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 478 SKLKEWLLERVVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTA 537
+++ E+LL+ G + D G +H+ A G + G ++ ++ G T
Sbjct: 53 TEIVEFLLQL---GVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTP 109
Query: 538 LHWAAYYGREKMVVDLLSAGAKPN 561
LH+AA R ++ V LL GA P+
Sbjct: 110 LHYAASKNRHEIAVMLLEGGANPD 133
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 43.1 bits (100), Expect = 7e-04, Method: Composition-based stats.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 6/104 (5%)
Query: 491 GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMV 550
G+ +D +G +HL A G+ + + G ++ +D G+T LH AAY G ++V
Sbjct: 70 GADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIV 129
Query: 551 VDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSE 594
LL GA D +Q+ G A DI+ G + LA L +
Sbjct: 130 EVLLKYGA------DVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 32.7 bits (73), Expect = 0.90, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 33/74 (44%)
Query: 488 VVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGRE 547
+ G+ D G +HL A G+ + + G ++ D YG T LH AA G
Sbjct: 34 MANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNGHL 93
Query: 548 KMVVDLLSAGAKPN 561
++V LL GA N
Sbjct: 94 EIVEVLLKHGADVN 107
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 42.7 bits (99), Expect = 8e-04, Method: Composition-based stats.
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 6/98 (6%)
Query: 488 VVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGRE 547
+ G+ D G +HL A G+ + + G +D D +G+T LH AAY+G
Sbjct: 34 MANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAYWGHL 93
Query: 548 KMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGF 585
++V LL GA D + + G+ +A+K G+
Sbjct: 94 EIVEVLLKNGA------DVNAMDSDGMTPLHLAAKWGY 125
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 6/104 (5%)
Query: 491 GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMV 550
G+ DV G +HL A G+ + + +G ++ D G T LH AA +G ++V
Sbjct: 70 GADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIV 129
Query: 551 VDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSE 594
LL GA D +Q+ G A DI+ G + LA L +
Sbjct: 130 EVLLKHGA------DVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 42.7 bits (99), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 54/125 (43%), Gaps = 8/125 (6%)
Query: 471 FFELTLKSKLKEWLLERVV-EGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDF 529
L KL E L ER++ + S T D + +H G+T + G+ ++
Sbjct: 10 ICNLAYSGKLDE-LKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND 68
Query: 530 RDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLA 589
+D GW+ LH AA GR+++V LL GA N V N G A+ K +A
Sbjct: 69 KDDAGWSPLHIAASAGRDEIVKALLVKGAHVNAV------NQNGCTPLHYAASKNRHEIA 122
Query: 590 AFLSE 594
L E
Sbjct: 123 VMLLE 127
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 478 SKLKEWLLERVVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTA 537
+++ E+LL+ G + D G +H+ A G + G ++ ++ G T
Sbjct: 53 TEIVEFLLQL---GVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTP 109
Query: 538 LHWAAYYGREKMVVDLLSAGAKPN 561
LH+AA R ++ V LL GA P+
Sbjct: 110 LHYAASKNRHEIAVMLLEGGANPD 133
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
Query: 488 VVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGRE 547
+V+G+ + +G +H A ++ G + D +D Y TA+H AA G
Sbjct: 93 LVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNL 152
Query: 548 KMVVDLLSAGAKPNLVTDPTSQNP 571
KMV LL A N + D P
Sbjct: 153 KMVHILLFYKASTN-IQDTEGNTP 175
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 6/106 (5%)
Query: 491 GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMV 550
G+ D G +HL A G+ + + +G ++ +DK G+T LH AA G ++V
Sbjct: 58 GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIV 117
Query: 551 VDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQA 596
LL AGA D +Q+ G D+A G + +A L + A
Sbjct: 118 EVLLKAGA------DVNAQDKFGKTPFDLAIDNGNEDIAEVLQKAA 157
Score = 38.9 bits (89), Expect = 0.013, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 488 VVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGRE 547
+ G+ D G +HL A G+ + + +G ++ +DK G+T LH AA G
Sbjct: 22 MANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHL 81
Query: 548 KMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKG 584
++V LL AGA D +++ G +A+++G
Sbjct: 82 EIVEVLLKAGA------DVNAKDKDGYTPLHLAAREG 112
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 32/107 (29%), Positives = 48/107 (44%), Gaps = 6/107 (5%)
Query: 488 VVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGRE 547
+ G+ D G +HL A LG+ + + G ++ D +G T LH AA G
Sbjct: 34 MANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRGHL 93
Query: 548 KMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSE 594
++V LL GA D +Q+ G A DI+ G + LA L +
Sbjct: 94 EIVEVLLKHGA------DVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 34/109 (31%), Positives = 52/109 (47%), Gaps = 7/109 (6%)
Query: 475 TLKSKLKEWLLERVVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRD-KY 533
T K E L +++E D +G+ + A LG + L + +G LD RD +
Sbjct: 50 TAARKADEQALSQLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRG 109
Query: 534 GWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASK 582
G TALH AA Y R ++V L+ GA D ++ GL A ++A +
Sbjct: 110 GLTALHMAAGYVRPEVVEALVELGA------DIEVEDERGLTALELARE 152
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 34/107 (31%), Positives = 51/107 (47%), Gaps = 7/107 (6%)
Query: 475 TLKSKLKEWLLERVVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRD-KY 533
T K E L +++E D +G+ + A LG + L + +G LD RD +
Sbjct: 51 TAARKADEQALSQLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRG 110
Query: 534 GWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIA 580
G TALH AA Y R ++V L+ GA D ++ GL A ++A
Sbjct: 111 GLTALHMAAGYVRPEVVEALVELGA------DIEVEDERGLTALELA 151
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 32/102 (31%), Positives = 46/102 (45%), Gaps = 6/102 (5%)
Query: 491 GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMV 550
G+ D+ G +HL A G+ + + G ++ D G T LH AA YG ++V
Sbjct: 70 GADVNASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIV 129
Query: 551 VDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFL 592
LL GA D +Q+ G A DI+ G + LA L
Sbjct: 130 EVLLKHGA------DVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 29.6 bits (65), Expect = 6.7, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 33/74 (44%)
Query: 488 VVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGRE 547
+ G+ D G +HL A G+ + + +G ++ D G T LH AA G
Sbjct: 34 MANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGHL 93
Query: 548 KMVVDLLSAGAKPN 561
++V LL GA N
Sbjct: 94 EIVEVLLKHGADVN 107
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 491 GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMV 550
G+ D +G+ +HL A G+ + L +G ++ +DK G T LH AA G ++V
Sbjct: 25 GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVV 84
Query: 551 VDLLSAGAKPNLVTDPTSQNPGGLNA 576
LL AGA N D + P L A
Sbjct: 85 KLLLEAGADVN-AKDKNGRTPLHLAA 109
Score = 38.5 bits (88), Expect = 0.017, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 36/68 (52%)
Query: 491 GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMV 550
G+ D +G+ +HL A G+ + L +G ++ +DK G T LH AA G ++V
Sbjct: 58 GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVV 117
Query: 551 VDLLSAGA 558
LL AGA
Sbjct: 118 KLLLEAGA 125
Score = 37.4 bits (85), Expect = 0.037, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 500 HGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAK 559
+G+ +HL A G+ + L +G ++ +DK G T LH AA G ++V LL AGA
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 560 PNLVTDPTSQNPGGLNA 576
N D + P L A
Sbjct: 61 VN-AKDKNGRTPLHLAA 76
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 40.0 bits (92), Expect = 0.006, Method: Composition-based stats.
Identities = 32/107 (29%), Positives = 48/107 (44%), Gaps = 6/107 (5%)
Query: 488 VVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGRE 547
+ G+ D G +HL A G+ + + G ++ RD +G T LH AA G
Sbjct: 34 MANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHL 93
Query: 548 KMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSE 594
++V LL GA D +Q+ G A DI+ G + LA L +
Sbjct: 94 EIVEVLLEYGA------DVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 53/125 (42%), Gaps = 8/125 (6%)
Query: 471 FFELTLKSKLKEWLLERVV-EGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDF 529
L KL E L ER++ + S T D + +H G+T + G+ ++
Sbjct: 10 ICNLAYSGKLDE-LKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND 68
Query: 530 RDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLA 589
+D GW+ LH AA G +++V LL GA N V N G A+ K +A
Sbjct: 69 KDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAV------NQNGCTPLHYAASKNRHEIA 122
Query: 590 AFLSE 594
L E
Sbjct: 123 VMLLE 127
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 478 SKLKEWLLERVVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTA 537
+++ E+LL+ G + D G +H+ A G + G ++ ++ G T
Sbjct: 53 TEIVEFLLQL---GVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTP 109
Query: 538 LHWAAYYGREKMVVDLLSAGAKPN 561
LH+AA R ++ V LL GA P+
Sbjct: 110 LHYAASKNRHEIAVMLLEGGANPD 133
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
Query: 488 VVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGRE 547
+V+G+ + +G +H A ++ G + D +D Y TA+H AA G
Sbjct: 93 LVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNL 152
Query: 548 KMVVDLLSAGAKPNLVTDPTSQNP 571
KMV LL A N + D P
Sbjct: 153 KMVHILLFYKASTN-IQDTEGNTP 175
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 6/98 (6%)
Query: 501 GQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKP 560
G +H+ A GYT + L + ++ +D GWT LH AA++G+E+ L+
Sbjct: 199 GGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVE----- 253
Query: 561 NLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALV 598
NL D + N G A D+A + L +Q L+
Sbjct: 254 NL-CDMEAVNKVGQTAFDVADEDILGYLEELQKKQNLL 290
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 46/105 (43%), Gaps = 9/105 (8%)
Query: 459 DKRTSLPEAKDSFFELTLKSKLKEWLLERVVEGSKTTEYDVHGQGVIHLCAMLG-YTWAI 517
D+RT L EA ++ +K +K G+ D G +HL A G Y
Sbjct: 43 DQRTPLMEAAENNHLEAVKYLIKA--------GALVDPKDAEGSTCLHLAAKKGHYEVVQ 94
Query: 518 LLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNL 562
L S + ++ +D GWT + WA Y +V LLS G+ N+
Sbjct: 95 YLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINI 139
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 39.3 bits (90), Expect = 0.008, Method: Composition-based stats.
Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 6/104 (5%)
Query: 491 GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMV 550
G+ D G +HL A G+ + + +G ++ D +G+T LH AA G ++V
Sbjct: 70 GADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIV 129
Query: 551 VDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSE 594
LL GA D +Q+ G A DI+ G + LA L +
Sbjct: 130 EVLLKNGA------DVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 36.2 bits (82), Expect = 0.081, Method: Composition-based stats.
Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 6/97 (6%)
Query: 488 VVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGRE 547
+ G+ D G +HL A G+ + + +G ++ +D G T LH AA G
Sbjct: 34 MANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHL 93
Query: 548 KMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKG 584
++V LL GA D + + G +A+K+G
Sbjct: 94 EIVEVLLKNGA------DVNASDSHGFTPLHLAAKRG 124
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 39.3 bits (90), Expect = 0.010, Method: Composition-based stats.
Identities = 32/99 (32%), Positives = 46/99 (46%), Gaps = 6/99 (6%)
Query: 491 GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMV 550
G+ DV+G +HL AM G+ + + G ++ D G T LH AA G ++V
Sbjct: 70 GADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIV 129
Query: 551 VDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLA 589
LL GA D +Q+ G A DI+ G + LA
Sbjct: 130 EVLLKYGA------DVNAQDKFGKTAFDISIDNGNEDLA 162
Score = 38.9 bits (89), Expect = 0.012, Method: Composition-based stats.
Identities = 32/106 (30%), Positives = 45/106 (42%), Gaps = 8/106 (7%)
Query: 488 VVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGRE 547
+ G+ D G +HL A+ G+ + + G +D D YG+T LH AA G
Sbjct: 34 IANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTGHL 93
Query: 548 KMVVDLLSAGAKPNLVTDPTSQNP-------GGLNAADIASKKGFD 586
++V LL GA N D T P G L ++ K G D
Sbjct: 94 EIVEVLLKYGADVN-AFDMTGSTPLHLAADEGHLEIVEVLLKYGAD 138
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 38.9 bits (89), Expect = 0.013, Method: Composition-based stats.
Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 6/104 (5%)
Query: 491 GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMV 550
G+ D G +HL AMLG+ + + +G ++ G T LH AA+ ++V
Sbjct: 37 GADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIV 96
Query: 551 VDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSE 594
LL GA D +Q+ G A DI+ G + LA L +
Sbjct: 97 EVLLKHGA------DVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 38.5 bits (88), Expect = 0.016, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 36/68 (52%)
Query: 491 GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMV 550
G+ D +G+ +HL A G+ + L +G ++ +DK G T LH AA G ++V
Sbjct: 25 GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVV 84
Query: 551 VDLLSAGA 558
LL AGA
Sbjct: 85 KLLLEAGA 92
Score = 37.4 bits (85), Expect = 0.036, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 500 HGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAK 559
+G+ +HL A G+ + L +G ++ +DK G T LH AA G ++V LL AGA
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 560 PNLVTDPTSQNPGGLNA 576
N D + P L A
Sbjct: 61 VN-AKDKNGRTPLHLAA 76
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 38.5 bits (88), Expect = 0.016, Method: Composition-based stats.
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Query: 523 SGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASK 582
+G ++ +DK G+T LH AA G ++V LL AGA D +Q+ G A DI+
Sbjct: 24 NGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA------DVNAQDKFGKTAFDISID 77
Query: 583 KGFDGLAAFLSEQA 596
G + LA L + A
Sbjct: 78 NGNEDLAEILQKAA 91
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 38.1 bits (87), Expect = 0.022, Method: Composition-based stats.
Identities = 31/107 (28%), Positives = 47/107 (43%), Gaps = 6/107 (5%)
Query: 488 VVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGRE 547
+ G+ D G +HL A G+ + + G ++ D +G T LH AA G
Sbjct: 34 MANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHL 93
Query: 548 KMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSE 594
++V LL GA D +Q+ G A DI+ G + LA L +
Sbjct: 94 EIVEVLLEYGA------DVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 37.4 bits (85), Expect = 0.038, Method: Composition-based stats.
Identities = 31/107 (28%), Positives = 47/107 (43%), Gaps = 6/107 (5%)
Query: 488 VVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGRE 547
+ G+ D G +HL A G+ + + G ++ D +G T LH AA G
Sbjct: 34 MANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHL 93
Query: 548 KMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSE 594
++V LL GA D +Q+ G A DI+ G + LA L +
Sbjct: 94 EIVEVLLEYGA------DVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 37.4 bits (85), Expect = 0.039, Method: Composition-based stats.
Identities = 31/107 (28%), Positives = 47/107 (43%), Gaps = 6/107 (5%)
Query: 488 VVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGRE 547
+ G+ D G +HL AM + + + +G ++ D G T LH A YG
Sbjct: 34 MANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYGHL 93
Query: 548 KMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSE 594
++V LL GA D +Q+ G A DI+ G + LA L +
Sbjct: 94 EIVEVLLKHGA------DVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 37.4 bits (85), Expect = 0.040, Method: Composition-based stats.
Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 6/104 (5%)
Query: 491 GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMV 550
G+ D G +HL A G+ + + +G ++ D G+T LH AA G ++V
Sbjct: 70 GADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIV 129
Query: 551 VDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSE 594
LL GA D +Q+ G A DI+ G + LA L +
Sbjct: 130 EVLLKHGA------DVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 35.4 bits (80), Expect = 0.13, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 23/39 (58%)
Query: 523 SGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPN 561
+G ++ D GWT LH AAY+G ++V LL GA N
Sbjct: 36 NGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVN 74
Score = 30.4 bits (67), Expect = 4.4, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 33/74 (44%)
Query: 488 VVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGRE 547
+ G+ D G +HL A G+ + + +G ++ D G T LH AA G
Sbjct: 34 MANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADRGHL 93
Query: 548 KMVVDLLSAGAKPN 561
++V LL GA N
Sbjct: 94 EVVEVLLKNGADVN 107
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 37.0 bits (84), Expect = 0.048, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 44/102 (43%), Gaps = 6/102 (5%)
Query: 491 GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMV 550
G+ D G +HL A G+ + + G ++ D G T LH AA G ++V
Sbjct: 70 GADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIV 129
Query: 551 VDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFL 592
LL GA D +Q+ G A DI+ G + LA L
Sbjct: 130 EVLLKYGA------DVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 33.1 bits (74), Expect = 0.60, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 35/74 (47%)
Query: 488 VVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGRE 547
+ G+ D +G +HL A +G+ + + +G ++ D G T LH AA G
Sbjct: 34 MANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAKRGHL 93
Query: 548 KMVVDLLSAGAKPN 561
++V LL GA N
Sbjct: 94 EIVEVLLKYGADVN 107
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 36.6 bits (83), Expect = 0.062, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
Query: 488 VVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGRE 547
+ G+ D G +HL G+ I + ++ DK GWT LH AAY G
Sbjct: 34 MANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRGHL 93
Query: 548 KMVVDLLSAGAKPNLVTDPTSQNPGGLNAAD 578
++V LL GA N + D P L A D
Sbjct: 94 EIVEVLLKYGADVNAM-DYQGYTPLHLAAED 123
Score = 35.8 bits (81), Expect = 0.11, Method: Composition-based stats.
Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 6/97 (6%)
Query: 498 DVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAG 557
D G +HL A G+ + + G ++ D G+T LH AA G ++V LL G
Sbjct: 77 DKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYG 136
Query: 558 AKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSE 594
A D +Q+ G A DI+ G + LA L +
Sbjct: 137 A------DVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 36.2 bits (82), Expect = 0.075, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 25/53 (47%)
Query: 491 GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAY 543
G+ + D G IHL A G+T + G +D D+ G T L WAAY
Sbjct: 99 GADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAY 151
Score = 33.9 bits (76), Expect = 0.35, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 536 TALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFL 592
T LHWA G MVV L+ GA P+L+ + G + +A++ G + A+L
Sbjct: 78 TPLHWATRQGHLSMVVQLMKYGADPSLI------DGEGCSCIHLAAQFGHTSIVAYL 128
Score = 33.5 bits (75), Expect = 0.47, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 7/60 (11%)
Query: 525 LSLDFRDKYGW-TALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKK 583
+S++ DKY TALHWA G ++ LL AGA + +QN G +A D+A ++
Sbjct: 167 VSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVD------AQNIKGESALDLAKQR 220
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 35.8 bits (81), Expect = 0.099, Method: Composition-based stats.
Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 6/107 (5%)
Query: 488 VVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGRE 547
+ G+ D G +HL A + + + G ++ D G T LH AA +G
Sbjct: 34 MANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAALFGHL 93
Query: 548 KMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSE 594
++V LL GA D +Q+ G A DI+ G + LA L +
Sbjct: 94 EIVEVLLKHGA------DVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 35.4 bits (80), Expect = 0.13, Method: Composition-based stats.
Identities = 28/107 (26%), Positives = 48/107 (44%), Gaps = 6/107 (5%)
Query: 488 VVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGRE 547
+ G+ D +G ++L G+ + + +G ++ D G+T LH AA+ G
Sbjct: 34 MANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHL 93
Query: 548 KMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSE 594
++ LL GA D +Q+ G A DI+ G + LA L +
Sbjct: 94 EIAEVLLKHGA------DVNAQDKFGKTAFDISIGNGNEDLAEILQK 134
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%)
Query: 505 IHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPN 561
+HL A G+ + G+ +D + G+T LH A++YG K+V LL A N
Sbjct: 282 LHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVN 338
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 10/114 (8%)
Query: 484 LLERVVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAY 543
LL+R G+ +V + +H+ A G+T + ++ + K T LH AA
Sbjct: 33 LLQR---GASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAAR 89
Query: 544 YGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKG-FDGLAAFLSEQA 596
G MV LL A PNL T G IA+++G + + A L ++A
Sbjct: 90 IGHTNMVKLLLENNANPNLATT------AGHTPLHIAAREGHVETVLALLEKEA 137
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 28/61 (45%)
Query: 501 GQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKP 560
G +H+ A G+ +L S K G+T LH AA YG+ ++ LL A P
Sbjct: 113 GHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHP 172
Query: 561 N 561
N
Sbjct: 173 N 173
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 527 LDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVT 564
++ + K G++ LH AA G +V LL GA PN V+
Sbjct: 337 VNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVS 374
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 507 LCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNL---- 562
L A+ G + LF G ++ D YG+TA AA YG+ K + L GA NL
Sbjct: 98 LAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKT 157
Query: 563 VTDPTSQNPGGLNAADIASKKG 584
D GG A A++KG
Sbjct: 158 KEDQERLRKGGATALMDAAEKG 179
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 524 GLSLDFRDKYG-WTALHWAAYYGREKMVVDLLSAGAKPNL 562
G +++F+++ G WT LH A RE +V LL GA P L
Sbjct: 48 GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVL 87
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 507 LCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNL---- 562
L A+ G + LF G ++ D YG+TA AA YG+ K + L GA NL
Sbjct: 78 LAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKT 137
Query: 563 VTDPTSQNPGGLNAADIASKKG 584
D GG A A++KG
Sbjct: 138 KEDQERLRKGGATALMDAAEKG 159
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 523 SGLSLDFRDKYG-WTALHWAAYYGREKMVVDLLSAGAKPNL 562
G +++F+++ G WT LH A RE +V LL GA P L
Sbjct: 27 GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVL 67
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 33.5 bits (75), Expect = 0.45, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 523 SGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASK 582
+G + +DK G T LH AA G ++V LL AGA D +Q+ G A DI+
Sbjct: 28 NGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGA------DVNAQDKFGKTAFDISID 81
Query: 583 KGFDGLAAFL 592
G + LA L
Sbjct: 82 NGNEDLAEIL 91
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 33.5 bits (75), Expect = 0.47, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 523 SGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASK 582
+G + +DK G T LH AA G ++V LL AGA D +Q+ G A DI+
Sbjct: 46 NGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGA------DVXAQDKFGKTAFDISID 99
Query: 583 KGFDGLAAFL 592
G + LA L
Sbjct: 100 NGNEDLAEIL 109
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 33.5 bits (75), Expect = 0.47, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
Query: 523 SGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNP-------GGLN 575
+G ++ D GWT LH AA+ G ++V LL GA N V D P G L
Sbjct: 36 NGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAV-DHAGMTPLRLAALFGHLE 94
Query: 576 AADIASKKGFD 586
++ K G D
Sbjct: 95 IVEVLLKNGAD 105
Score = 30.8 bits (68), Expect = 3.5, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 29/59 (49%)
Query: 491 GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKM 549
G+ D+ G +HL AM G+ + + +G ++ +DK+G TA + G E +
Sbjct: 103 GADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDL 161
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 33.5 bits (75), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
Query: 527 LDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFD 586
++ D+ G+T L WAA +G+ +V LL GA P L+ G +A +A KG+
Sbjct: 45 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL------GKGRESALSLACSKGYT 98
Query: 587 GLAAFL 592
+ L
Sbjct: 99 DIVKML 104
Score = 33.1 bits (74), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 512 GYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNP 571
GYT + + G+ ++ D G T L +A + K V LL +GA DPT +
Sbjct: 96 GYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA------DPTIETD 149
Query: 572 GGLNAADIASKKGF 585
G N+ D+A G+
Sbjct: 150 SGYNSMDLAVALGY 163
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 33.1 bits (74), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 28/61 (45%)
Query: 501 GQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKP 560
G +HL A G+ + +G+S D R K T LH AA G +V LL GA
Sbjct: 34 GTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADV 93
Query: 561 N 561
N
Sbjct: 94 N 94
Score = 32.7 bits (73), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 505 IHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVT 564
+H+ A G+ + + G ++ +D TALHWA + +++V L+ GA
Sbjct: 71 LHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGA------ 124
Query: 565 DPTSQNPGGLNAADIASKKGFDGLAAFL 592
D +Q+ A DI+ G + LA L
Sbjct: 125 DVHTQSKFCKTAFDISIDNGNEDLAEIL 152
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 33.1 bits (74), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
Query: 527 LDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFD 586
++ D+ G+T L WAA +G+ +V LL GA P L+ G +A +A KG+
Sbjct: 27 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL------GKGRESALSLACSKGYT 80
Query: 587 GLAAFL 592
+ L
Sbjct: 81 DIVKML 86
Score = 32.7 bits (73), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 512 GYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNP 571
GYT + + G+ ++ D G T L +A + K V LL +GA DPT +
Sbjct: 78 GYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA------DPTIETD 131
Query: 572 GGLNAADIASKKGF 585
G N+ D+A G+
Sbjct: 132 SGYNSMDLAVALGY 145
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 33.1 bits (74), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
Query: 527 LDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFD 586
++ D+ G+T L WAA +G+ +V LL GA P L+ G +A +A KG+
Sbjct: 29 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL------GKGRESALSLACSKGYT 82
Query: 587 GLAAFL 592
+ L
Sbjct: 83 DIVKML 88
Score = 32.7 bits (73), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 512 GYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNP 571
GYT + + G+ ++ D G T L +A + K V LL +GA DPT +
Sbjct: 80 GYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA------DPTIETD 133
Query: 572 GGLNAADIASKKGF 585
G N+ D+A G+
Sbjct: 134 SGYNSMDLAVALGY 147
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%)
Query: 501 GQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKP 560
G+ ++H+ ++ G ++ +G + +D GWT LH A +G K+V LL A
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV 69
Query: 561 N 561
N
Sbjct: 70 N 70
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 32.7 bits (73), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query: 477 KSKLKEWLLERVVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWT 536
+ ++ E LL + G+ E + +H+ A + + + G ++ D G T
Sbjct: 226 RKQVAELLLRK---GANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQT 282
Query: 537 ALHWAAYYGREKMVVDLLSAGAKPNLVT 564
ALH AA G + LLS G+ P++++
Sbjct: 283 ALHRAALAGHLQTCRLLLSYGSDPSIIS 310
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 46/100 (46%), Gaps = 13/100 (13%)
Query: 487 RVVEGSKTTEYDVHGQ---GVIHL---CAMLGYTWAILLFSWSGLSLDFRDKYGWTALHW 540
R+V+ DVH + G++ L C+ Y LL G ++ D + +T LH
Sbjct: 72 RIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKH-GACVNAMDLWQFTPLHE 130
Query: 541 AAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIA 580
AA R ++ LLS GA P LV N G +A D+A
Sbjct: 131 AASKNRVEVCSLLLSHGADPTLV------NCHGKSAVDMA 164
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 32.3 bits (72), Expect = 1.2, Method: Composition-based stats.
Identities = 26/66 (39%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 520 FSWSGLSL-DFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAAD 578
F + G SL + D+ G TALH AA Y R LL A A N + D + P L+AA
Sbjct: 42 FIYQGASLHNQTDRTGATALHLAAAYSRSDAAKRLLEASADAN-IQDNMGRTP--LHAAV 98
Query: 579 IASKKG 584
A +G
Sbjct: 99 SADAQG 104
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 28/44 (63%)
Query: 519 LFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNL 562
LF+ + L+ ++K G TALH AA+ G +V LL+ GA+ +L
Sbjct: 125 LFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDL 168
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 11/79 (13%)
Query: 520 FSWSGLSLDFR------DKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGG 573
SW LD R DK G TAL+WA + G + +V L + +PN+ + QN G
Sbjct: 86 LSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFT---QPNI--ELNQQNKLG 140
Query: 574 LNAADIASKKGFDGLAAFL 592
A A+ KG+ + L
Sbjct: 141 DTALHAAAWKGYADIVQLL 159
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 26/66 (39%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 520 FSWSGLSL-DFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAAD 578
F + G SL + D+ G TALH AA Y R LL A A N + D + P L+AA
Sbjct: 42 FIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAN-IQDNMGRTP--LHAAV 98
Query: 579 IASKKG 584
A +G
Sbjct: 99 SADAQG 104
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 26/66 (39%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 520 FSWSGLSL-DFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAAD 578
F + G SL + D+ G TALH AA Y R LL A A N + D + P L+AA
Sbjct: 43 FIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAN-IQDNMGRTP--LHAAV 99
Query: 579 IASKKG 584
A +G
Sbjct: 100 SADAQG 105
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Query: 482 EWLLERVVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWA 541
E+LL+ G+ + D G+G +H +LG+T LF G L RD G L A
Sbjct: 252 EFLLQ---NGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIA 308
Query: 542 AYYGREKMVVDL 553
+V L
Sbjct: 309 METANADIVTLL 320
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 6/87 (6%)
Query: 490 EGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKM 549
+GS D G+ + + GY+ G +++ R+ G T L A+ YGR ++
Sbjct: 90 KGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEI 149
Query: 550 VVDLLSAGAKPNLVTDPTSQNPGGLNA 576
V LL GA D ++++ GL A
Sbjct: 150 VKKLLELGA------DISARDLTGLTA 170
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 32.0 bits (71), Expect = 1.6, Method: Composition-based stats.
Identities = 26/66 (39%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 520 FSWSGLSL-DFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAAD 578
F + G SL + D+ G TALH AA Y R LL A A N + D + P L+AA
Sbjct: 10 FIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAN-IQDNMGRTP--LHAAV 66
Query: 579 IASKKG 584
A +G
Sbjct: 67 SADAQG 72
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Query: 482 EWLLERVVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWA 541
E+LL+ G+ + D G+G +H +LG+T LF G L RD G L A
Sbjct: 252 EFLLQ---NGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIA 308
Query: 542 AYYGREKMVVDL 553
+V L
Sbjct: 309 METANADIVTLL 320
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Query: 482 EWLLERVVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWA 541
E+LL+ G+ + D G+G +H +LG+T LF G L RD G L A
Sbjct: 252 EFLLQ---NGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIA 308
Query: 542 AYYGREKMVVDL 553
+V L
Sbjct: 309 METANADIVTLL 320
>pdb|1OE9|A Chain A, Crystal Structure Of Myosin V Motor With Essential Light
Chain - Nucleotide-Free
pdb|1W7I|A Chain A, Crystal Structure Of Myosin V Motor Without Nucleotide
Soaked In 10 Mm Mgadp
pdb|1W7J|A Chain A, Crystal Structure Of Myosin V Motor With Essential Light
Chain + Adp-Befx - Near Rigor
Length = 795
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 696 KKMAAAARIQHRFRSWKVRKEFLNMRR 722
K AA RIQ R W +RK+++ MRR
Sbjct: 766 KLRAACIRIQKTIRGWLMRKKYMRMRR 792
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 531 DKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVT 564
D +G++ LHWA GR +V L+ GA+ N++
Sbjct: 36 DDHGFSPLHWACREGRSAVVEMLIMRGARINVMN 69
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 30.8 bits (68), Expect = 3.7, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 531 DKYGWTALHWAAYYGREKMVVDLLSAGAKPNLV 563
D +G++ LHWA GR +V L+ GA+ N++
Sbjct: 31 DDHGFSPLHWACREGRSAVVEMLIMRGARINVM 63
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 9/83 (10%)
Query: 504 VIHLCAMLGYTWAILLFSW---SGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKP 560
V+HL + ++ L + +G LD + G TALH+AA Y + + LL A
Sbjct: 193 VLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALV 252
Query: 561 NLVTDPTSQNPGGLNAADIASKK 583
V N G A DIA KK
Sbjct: 253 GTV------NEAGETALDIARKK 269
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 30.0 bits (66), Expect = 6.1, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 22/42 (52%)
Query: 517 ILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGA 558
+L FS LD ++ G TALH AA G V L +AGA
Sbjct: 28 LLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGA 69
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 30.0 bits (66), Expect = 6.1, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 22/42 (52%)
Query: 517 ILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGA 558
+L FS LD ++ G TALH AA G V L +AGA
Sbjct: 28 LLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGA 69
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 42/101 (41%), Gaps = 10/101 (9%)
Query: 504 VIHLCAMLGYTWAILLFSW---SGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKP 560
V+HL + ++ L + +G LD + G TALH+AA Y + + LL A
Sbjct: 174 VLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALV 233
Query: 561 NLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQF 601
V N G A DIA KK L EQA F
Sbjct: 234 GTV------NEAGETALDIARKKHHKECEELL-EQAQAGTF 267
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 531 DKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAA 590
D+ G+T L WA+ +G + V LL GA P+++ +A +AS G+ +
Sbjct: 33 DERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERE------SALSLASTGGYTDIVG 86
Query: 591 FLSEQ 595
L E+
Sbjct: 87 LLLER 91
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 29.6 bits (65), Expect = 6.9, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 45/120 (37%), Gaps = 6/120 (5%)
Query: 469 DSFFELTLKSKLKEWLLERVVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLD 528
D F LK+ + + + V +G G+ +H A G + G ++
Sbjct: 3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN 62
Query: 529 FRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGL 588
DK+ T L A Y G V LLS GA D T + P GL A + + L
Sbjct: 63 APDKHHITPLLSAVYEGHVSCVKLLLSKGA------DKTVKGPDGLTALEATDNQAIKAL 116
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 531 DKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAA 590
D+ G+T L WA+ +G + V LL GA P+++ +A +AS G+ +
Sbjct: 33 DERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERE------SALSLASTGGYTDIVG 86
Query: 591 FLSEQ 595
L E+
Sbjct: 87 LLLER 91
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 29.6 bits (65), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Query: 528 DFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDG 587
D+ D GWT H A G ++V L KP+L T+Q G+ +A K +
Sbjct: 66 DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDL-NKITNQ---GVTCLHLAVGKKWFE 121
Query: 588 LAAFLSEQALVAQFND 603
++ FL E + D
Sbjct: 122 VSQFLIENGASVRIKD 137
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 29.3 bits (64), Expect = 8.5, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 45/120 (37%), Gaps = 6/120 (5%)
Query: 469 DSFFELTLKSKLKEWLLERVVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLD 528
D F LK+ + + + V +G G+ +H A G + G ++
Sbjct: 8 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN 67
Query: 529 FRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGL 588
DK+ T L A Y G V LLS GA D T + P GL A + + L
Sbjct: 68 APDKHHITPLLSAVYEGHVSCVKLLLSKGA------DKTVKGPDGLTAFEATDNQAIKAL 121
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 29.3 bits (64), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Query: 528 DFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDG 587
D+ D GWT H A G ++V L KP+L T+Q G+ +A K +
Sbjct: 66 DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDL-NKITNQ---GVTCLHLAVGKKWFE 121
Query: 588 LAAFLSEQALVAQFND 603
++ FL E + D
Sbjct: 122 VSQFLIENGASVRIKD 137
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 29.3 bits (64), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Query: 528 DFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDG 587
D+ D GWT H A G ++V L KP+L T+Q G+ +A K +
Sbjct: 66 DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDL-NKITNQ---GVTCLHLAVGKKWFE 121
Query: 588 LAAFLSEQALVAQFND 603
++ FL E + D
Sbjct: 122 VSQFLIENGASVRIKD 137
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,292,802
Number of Sequences: 62578
Number of extensions: 1043217
Number of successful extensions: 2448
Number of sequences better than 100.0: 82
Number of HSP's better than 100.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 2242
Number of HSP's gapped (non-prelim): 175
length of query: 848
length of database: 14,973,337
effective HSP length: 107
effective length of query: 741
effective length of database: 8,277,491
effective search space: 6133620831
effective search space used: 6133620831
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)