Query 003099
Match_columns 848
No_of_seqs 230 out of 345
Neff 3.3
Searched_HMMs 46136
Date Thu Mar 28 17:00:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003099.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003099hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0431 Auxilin-like protein a 100.0 1.9E-40 4.1E-45 364.3 9.9 145 703-847 304-452 (453)
2 smart00271 DnaJ DnaJ molecular 98.7 3.3E-08 7.1E-13 79.8 5.3 58 785-848 3-60 (60)
3 KOG0713 Molecular chaperone (D 98.6 2.1E-08 4.5E-13 108.4 4.4 63 779-848 12-74 (336)
4 cd06257 DnaJ DnaJ domain or J- 98.6 7.4E-08 1.6E-12 76.4 5.0 53 786-845 3-55 (55)
5 COG0484 DnaJ DnaJ-class molecu 98.6 4.4E-08 9.5E-13 107.4 4.6 57 784-847 5-61 (371)
6 PF00226 DnaJ: DnaJ domain; I 98.5 1.1E-07 2.3E-12 78.3 4.0 56 786-847 3-58 (64)
7 PRK14288 chaperone protein Dna 98.4 2E-07 4.3E-12 101.6 4.6 57 784-847 4-60 (369)
8 PRK14296 chaperone protein Dna 98.3 3.5E-07 7.6E-12 99.9 4.5 56 784-847 5-60 (372)
9 PRK09430 djlA Dna-J like membr 98.3 5.8E-07 1.3E-11 94.6 5.8 64 783-846 200-263 (267)
10 PRK14279 chaperone protein Dna 98.3 5.5E-07 1.2E-11 99.0 4.9 57 784-847 10-66 (392)
11 PRK14285 chaperone protein Dna 98.3 6.4E-07 1.4E-11 97.6 4.8 57 784-847 4-60 (365)
12 KOG0718 Molecular chaperone (D 98.2 9.8E-07 2.1E-11 98.9 4.6 63 780-846 6-68 (546)
13 KOG0691 Molecular chaperone (D 98.2 1.4E-06 3.1E-11 93.4 5.2 55 786-847 8-62 (296)
14 PRK14299 chaperone protein Dna 98.2 1.2E-06 2.6E-11 92.6 4.3 56 784-847 5-60 (291)
15 PRK14286 chaperone protein Dna 98.2 1.2E-06 2.7E-11 95.6 4.4 57 784-847 5-61 (372)
16 PRK14295 chaperone protein Dna 98.2 1.4E-06 3.1E-11 95.7 4.8 58 783-847 9-66 (389)
17 PRK14278 chaperone protein Dna 98.2 1.4E-06 3.1E-11 95.3 4.7 56 784-847 4-59 (378)
18 PRK09510 tolA cell envelope in 98.2 0.00035 7.6E-09 77.8 23.0 21 519-539 90-110 (387)
19 PRK14277 chaperone protein Dna 98.2 1.4E-06 3E-11 95.5 4.4 57 784-847 6-62 (386)
20 PRK10266 curved DNA-binding pr 98.2 1.6E-06 3.5E-11 92.2 4.5 56 784-847 5-60 (306)
21 PRK14294 chaperone protein Dna 98.2 1.6E-06 3.4E-11 94.4 4.4 57 784-847 5-61 (366)
22 PRK14283 chaperone protein Dna 98.1 1.7E-06 3.7E-11 94.5 4.7 56 784-847 6-61 (378)
23 PRK14291 chaperone protein Dna 98.1 1.7E-06 3.6E-11 94.8 4.5 56 784-847 4-59 (382)
24 PRK10767 chaperone protein Dna 98.1 1.8E-06 3.9E-11 93.9 4.6 57 784-847 5-61 (371)
25 PTZ00037 DnaJ_C chaperone prot 98.1 1.6E-06 3.5E-11 96.5 4.2 53 784-847 29-81 (421)
26 PRK14280 chaperone protein Dna 98.1 1.9E-06 4.1E-11 94.2 4.6 56 784-847 5-60 (376)
27 PRK14276 chaperone protein Dna 98.1 1.9E-06 4.2E-11 94.3 4.6 56 784-847 5-60 (380)
28 PRK14287 chaperone protein Dna 98.1 1.8E-06 3.9E-11 94.3 4.3 56 784-847 5-60 (371)
29 PRK14282 chaperone protein Dna 98.1 2.2E-06 4.7E-11 93.4 4.7 58 784-847 5-62 (369)
30 PRK14281 chaperone protein Dna 98.1 2.6E-06 5.7E-11 93.8 4.9 57 784-847 4-60 (397)
31 PRK14301 chaperone protein Dna 98.1 2.9E-06 6.3E-11 92.7 4.7 57 784-847 5-61 (373)
32 PRK14297 chaperone protein Dna 98.1 2.9E-06 6.3E-11 92.8 4.5 57 784-847 5-61 (380)
33 PRK14298 chaperone protein Dna 98.1 2.8E-06 6.1E-11 93.1 4.3 56 784-847 6-61 (377)
34 PRK14300 chaperone protein Dna 98.1 3.4E-06 7.4E-11 92.1 4.9 57 783-847 3-59 (372)
35 KOG0717 Molecular chaperone (D 98.1 2.9E-06 6.3E-11 95.1 4.2 57 784-846 9-65 (508)
36 PRK14293 chaperone protein Dna 98.0 5.4E-06 1.2E-10 90.6 5.2 56 784-847 4-59 (374)
37 PRK14290 chaperone protein Dna 98.0 6E-06 1.3E-10 90.0 5.2 59 783-847 3-61 (365)
38 KOG0719 Molecular chaperone (D 98.0 6.3E-06 1.4E-10 86.3 4.1 60 784-848 15-74 (264)
39 COG2214 CbpA DnaJ-class molecu 97.9 1.2E-05 2.6E-10 76.0 4.7 57 785-847 8-64 (237)
40 KOG0716 Molecular chaperone (D 97.9 1.2E-05 2.5E-10 85.6 5.0 55 785-846 33-87 (279)
41 PHA03102 Small T antigen; Revi 97.9 1.4E-05 3E-10 79.0 4.9 47 789-846 11-59 (153)
42 PRK14289 chaperone protein Dna 97.9 1.1E-05 2.5E-10 88.3 4.5 57 784-847 6-62 (386)
43 PRK05014 hscB co-chaperone Hsc 97.8 3.3E-05 7.1E-10 76.9 6.2 57 788-846 6-64 (171)
44 PTZ00341 Ring-infected erythro 97.8 1.8E-05 3.9E-10 95.3 4.7 56 784-847 574-629 (1136)
45 KOG0715 Molecular chaperone (D 97.7 3.2E-05 7E-10 82.6 4.9 63 778-848 38-100 (288)
46 KOG1150 Predicted molecular ch 97.7 3.2E-05 7E-10 79.8 4.5 55 786-846 56-110 (250)
47 COG3064 TolA Membrane protein 97.7 0.0071 1.5E-07 66.2 21.4 10 654-663 259-268 (387)
48 KOG0720 Molecular chaperone (D 97.6 5.4E-05 1.2E-09 85.2 5.3 74 766-847 218-291 (490)
49 PRK01356 hscB co-chaperone Hsc 97.6 6.8E-05 1.5E-09 74.5 5.2 57 786-846 5-63 (166)
50 PRK00294 hscB co-chaperone Hsc 97.6 9.5E-05 2.1E-09 74.1 6.1 53 792-846 15-67 (173)
51 KOG0721 Molecular chaperone (D 97.6 6.7E-05 1.4E-09 78.1 5.0 57 784-847 100-156 (230)
52 PRK03578 hscB co-chaperone Hsc 97.6 0.0001 2.3E-09 73.9 6.2 60 785-846 8-69 (176)
53 TIGR00714 hscB Fe-S protein as 97.6 0.0001 2.2E-09 72.5 5.4 50 795-846 3-52 (157)
54 PTZ00100 DnaJ chaperone protei 97.5 7.4E-05 1.6E-09 71.2 4.0 50 784-844 66-115 (116)
55 COG5407 SEC63 Preprotein trans 97.0 0.00081 1.8E-08 76.1 5.2 73 769-846 87-159 (610)
56 PHA02624 large T antigen; Prov 97.0 0.00056 1.2E-08 80.0 3.8 49 787-846 15-65 (647)
57 KOG0550 Molecular chaperone (D 97.0 0.0013 2.8E-08 74.1 6.4 95 746-846 329-430 (486)
58 KOG0714 Molecular chaperone (D 96.7 0.00099 2.2E-08 66.5 2.8 56 786-847 6-61 (306)
59 KOG0712 Molecular chaperone (D 96.7 0.0012 2.5E-08 72.7 3.1 38 781-818 2-39 (337)
60 PRK09510 tolA cell envelope in 96.6 0.22 4.9E-06 56.1 20.7 11 653-663 256-266 (387)
61 TIGR02794 tolA_full TolA prote 96.4 0.31 6.7E-06 54.1 19.8 41 772-814 285-325 (346)
62 PRK14284 chaperone protein Dna 96.4 0.0025 5.4E-08 70.6 3.5 34 785-818 3-36 (391)
63 PRK01773 hscB co-chaperone Hsc 96.1 0.011 2.3E-07 59.7 6.2 50 794-845 15-64 (173)
64 TIGR02349 DnaJ_bact chaperone 96.0 0.0058 1.2E-07 66.5 4.0 32 786-817 3-34 (354)
65 KOG0722 Molecular chaperone (D 95.9 0.0038 8.3E-08 66.9 1.9 55 785-847 35-89 (329)
66 PRK14292 chaperone protein Dna 95.8 0.0078 1.7E-07 66.1 3.7 33 785-817 4-36 (371)
67 KOG0624 dsRNA-activated protei 95.7 0.01 2.2E-07 66.2 4.3 61 783-847 394-454 (504)
68 KOG1789 Endocytosis protein RM 95.6 0.015 3.3E-07 71.3 5.3 39 797-845 1299-1337(2235)
69 KOG0723 Molecular chaperone (D 93.7 0.11 2.3E-06 49.8 5.0 46 789-845 62-107 (112)
70 TIGR02794 tolA_full TolA prote 93.3 6.6 0.00014 43.9 18.8 17 519-535 78-94 (346)
71 COG5269 ZUO1 Ribosome-associat 93.0 0.1 2.2E-06 56.8 4.1 47 795-846 58-104 (379)
72 TIGR03835 termin_org_DnaJ term 93.0 0.12 2.6E-06 62.4 5.1 34 785-818 4-37 (871)
73 COG3064 TolA Membrane protein 92.6 17 0.00037 41.0 20.2 13 521-533 100-112 (387)
74 COG1076 DjlA DnaJ-domain-conta 87.8 0.58 1.3E-05 46.9 3.9 60 784-843 114-173 (174)
75 KOG4364 Chromatin assembly fac 77.7 1.9E+02 0.0041 35.9 19.4 30 744-773 646-675 (811)
76 KOG1029 Endocytic adaptor prot 62.1 1.2E+02 0.0027 38.0 13.5 13 511-523 312-324 (1118)
77 PF08628 Nexin_C: Sorting nexi 60.4 11 0.00025 34.9 3.9 72 765-838 36-110 (113)
78 PF06637 PV-1: PV-1 protein (P 57.2 3.8E+02 0.0083 31.5 15.7 8 195-202 111-118 (442)
79 PF14687 DUF4460: Domain of un 53.6 25 0.00054 33.8 5.0 47 795-844 6-52 (112)
80 KOG0568 Molecular chaperone (D 50.5 24 0.00053 38.4 4.9 65 767-841 30-97 (342)
81 KOG1144 Translation initiation 49.5 1.4E+02 0.0031 37.6 11.3 8 766-773 470-477 (1064)
82 PF05262 Borrelia_P83: Borreli 47.2 4.6E+02 0.0099 31.5 14.7 12 367-378 108-119 (489)
83 KOG1029 Endocytic adaptor prot 46.7 6.3E+02 0.014 32.4 15.9 13 794-806 647-659 (1118)
84 PF05262 Borrelia_P83: Borreli 40.5 7.3E+02 0.016 29.9 16.2 8 686-693 391-398 (489)
85 PRK06569 F0F1 ATP synthase sub 38.3 2.2E+02 0.0047 29.2 9.2 23 626-648 80-102 (155)
86 KOG0163 Myosin class VI heavy 38.3 6.5E+02 0.014 32.3 14.3 15 804-818 1180-1194(1259)
87 PF11600 CAF-1_p150: Chromatin 34.4 5.7E+02 0.012 26.8 15.6 6 656-661 182-187 (216)
88 COG1076 DjlA DnaJ-domain-conta 33.0 55 0.0012 33.0 4.1 46 798-845 18-63 (174)
89 KOG0163 Myosin class VI heavy 31.3 5.4E+02 0.012 32.9 12.2 15 114-128 479-493 (1259)
90 KOG2412 Nuclear-export-signal 28.5 2E+02 0.0043 34.9 8.0 17 773-789 451-467 (591)
91 KOG4661 Hsp27-ERE-TATA-binding 27.2 8.6E+02 0.019 30.3 12.7 9 704-712 795-803 (940)
92 KOG3192 Mitochondrial J-type c 25.6 1.1E+02 0.0024 31.9 4.7 52 792-845 19-70 (168)
93 PRK12472 hypothetical protein; 24.7 7.4E+02 0.016 30.0 11.6 69 580-653 253-321 (508)
94 PF00769 ERM: Ezrin/radixin/mo 24.0 9.3E+02 0.02 26.0 17.9 23 749-771 208-230 (246)
95 PRK12472 hypothetical protein; 23.9 1.4E+03 0.03 27.9 14.6 13 764-776 435-447 (508)
96 PF09738 DUF2051: Double stran 23.6 7.7E+02 0.017 27.8 11.1 11 613-623 1-11 (302)
97 KOG4661 Hsp27-ERE-TATA-binding 21.9 1.5E+03 0.033 28.3 13.4 8 657-664 740-747 (940)
98 PF11600 CAF-1_p150: Chromatin 21.3 9.7E+02 0.021 25.2 19.4 7 658-664 180-186 (216)
99 PF03656 Pam16: Pam16; InterP 20.4 1.2E+02 0.0025 30.2 3.6 39 789-834 64-102 (127)
No 1
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=100.00 E-value=1.9e-40 Score=364.33 Aligned_cols=145 Identities=55% Similarity=0.886 Sum_probs=139.6
Q ss_pred CCCCCcHHHhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH----HHhHHhhHHHHhhhhcCCCccHHHHHhhccc
Q 003099 703 GIEGESAQRCKARLERHRRTAERAAKALAEKNMRDLLAQREQAER----NRLAETLDADVKRWSSGKEGNLRALLSTLQY 778 (848)
Q Consensus 703 ~~~ge~~~R~kar~er~~rt~er~akalaEKn~rdl~~qkeqaER----~~l~d~Id~kI~~Wa~GKe~NIRaLLSTL~~ 778 (848)
..-|...+++..+..+++++..+...++..+.-+|+.-+++++++ .++++.||.+|..|+.||++|||||||||||
T Consensus 304 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~k~~~~~ae~~~e~~r~~e~~d~~I~~W~~GKE~NIRALLSTLh~ 383 (453)
T KOG0431|consen 304 TERGKRAESSSTRTKKQMDTFSDLLNPQGFKSTSDEKRPREIAEMRKELSRLMEPLDEEIRRWSEGKEGNIRALLSTLHY 383 (453)
T ss_pred ccccccccccccccchhhhhhhhhhccccccchhhhhhHHHHHHHHHHHHhhcchHHHHHHHhcccccccHHHHHHHHhH
Confidence 445888889999999999999999999999999999999999999 8999999999999999999999999999999
Q ss_pred ccCCCCCCcccCccccCChhhHHHHHHhhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhhc
Q 003099 779 ILGPDSGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSEE 847 (848)
Q Consensus 779 VLWp~~gWkpVgmtdL~tpaqVKKAYRKAiLkvHPDKl~q~gas~EqK~IAe~VF~~LneAwe~F~deE 847 (848)
||||+|||+||+|+|||||++|||+||||||||||||++|+|++++|||||+.||++|++||+.|+..+
T Consensus 384 VLW~es~WqpVsltDLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~f~~~~ 452 (453)
T KOG0431|consen 384 VLWPESGWQPVSLTDLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNKFNQQE 452 (453)
T ss_pred hhcCccCcccCchhhccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHhhhccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999765
No 2
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=98.67 E-value=3.3e-08 Score=79.84 Aligned_cols=58 Identities=29% Similarity=0.398 Sum_probs=50.5
Q ss_pred CCcccCccccCChhhHHHHHHhhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhhcC
Q 003099 785 GWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSEER 848 (848)
Q Consensus 785 gWkpVgmtdL~tpaqVKKAYRKAiLkvHPDKl~q~gas~EqK~IAe~VF~~LneAwe~F~deEr 848 (848)
-|.-|||...++..+||++|+++++.+|||++++. ...+...|..|+.||++|++..|
T Consensus 3 ~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~------~~~~~~~~~~l~~Ay~~L~~~~~ 60 (60)
T smart00271 3 YYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGD------KEEAEEKFKEINEAYEVLSDPEK 60 (60)
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc------hHHHHHHHHHHHHHHHHHcCCCC
Confidence 36778898889999999999999999999998742 35688999999999999998754
No 3
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=2.1e-08 Score=108.41 Aligned_cols=63 Identities=24% Similarity=0.382 Sum_probs=55.0
Q ss_pred ccCCCCCCcccCccccCChhhHHHHHHhhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhhcC
Q 003099 779 ILGPDSGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSEER 848 (848)
Q Consensus 779 VLWp~~gWkpVgmtdL~tpaqVKKAYRKAiLkvHPDKl~q~gas~EqK~IAe~VF~~LneAwe~F~deEr 848 (848)
|+-.-+-|+-||+...++..+||+||||++|++||||++.+. -|...|..|+-||++|+|++.
T Consensus 12 v~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp-------~A~e~F~~in~AYEVLsDpek 74 (336)
T KOG0713|consen 12 VLAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDP-------NANEKFKEINAAYEVLSDPEK 74 (336)
T ss_pred hhcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCH-------HHHHHHHHHHHHHHHhcCHHH
Confidence 343346788899999999999999999999999999999632 489999999999999999873
No 4
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=98.58 E-value=7.4e-08 Score=76.37 Aligned_cols=53 Identities=28% Similarity=0.426 Sum_probs=47.2
Q ss_pred CcccCccccCChhhHHHHHHhhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhh
Q 003099 786 WHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNS 845 (848)
Q Consensus 786 WkpVgmtdL~tpaqVKKAYRKAiLkvHPDKl~q~gas~EqK~IAe~VF~~LneAwe~F~d 845 (848)
|.-+|+...+++.+||++|+++++.+|||+.++. ..+...|..|+.||++|++
T Consensus 3 y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~-------~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 3 YDILGVPPDASDEEIKKAYRKLALKYHPDKNPDD-------PEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-------HHHHHHHHHHHHHHHHhcC
Confidence 5668888999999999999999999999998742 4688999999999999975
No 5
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=4.4e-08 Score=107.43 Aligned_cols=57 Identities=25% Similarity=0.367 Sum_probs=51.2
Q ss_pred CCCcccCccccCChhhHHHHHHhhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhhc
Q 003099 784 SGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSEE 847 (848)
Q Consensus 784 ~gWkpVgmtdL~tpaqVKKAYRKAiLkvHPDKl~q~gas~EqK~IAe~VF~~LneAwe~F~deE 847 (848)
+.|.-|+|+.-+|+..|||||||+++++|||+++.. .-|+..|..|++||++|+|.+
T Consensus 5 dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~-------~~AeeKFKEI~eAYEVLsD~e 61 (371)
T COG0484 5 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGD-------KEAEEKFKEINEAYEVLSDPE 61 (371)
T ss_pred chhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-------HHHHHHHHHHHHHHHHhCCHH
Confidence 457889999999999999999999999999999842 148999999999999999976
No 6
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=98.49 E-value=1.1e-07 Score=78.33 Aligned_cols=56 Identities=27% Similarity=0.392 Sum_probs=49.2
Q ss_pred CcccCccccCChhhHHHHHHhhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhhc
Q 003099 786 WHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSEE 847 (848)
Q Consensus 786 WkpVgmtdL~tpaqVKKAYRKAiLkvHPDKl~q~gas~EqK~IAe~VF~~LneAwe~F~deE 847 (848)
|.-|||..-++...|+++|++++..+|||++++.. -.+...|..|+.||++|++..
T Consensus 3 y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~------~~~~~~~~~i~~Ay~~L~~~~ 58 (64)
T PF00226_consen 3 YEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDE------AEAEEKFARINEAYEILSDPE 58 (64)
T ss_dssp HHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTH------HHHHHHHHHHHHHHHHHHSHH
T ss_pred HHHCCCCCCCCHHHHHHHHHhhhhccccccchhhh------hhhhHHHHHHHHHHHHhCCHH
Confidence 45689999999999999999999999999997532 468899999999999999864
No 7
>PRK14288 chaperone protein DnaJ; Provisional
Probab=98.41 E-value=2e-07 Score=101.58 Aligned_cols=57 Identities=28% Similarity=0.445 Sum_probs=50.2
Q ss_pred CCCcccCccccCChhhHHHHHHhhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhhc
Q 003099 784 SGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSEE 847 (848)
Q Consensus 784 ~gWkpVgmtdL~tpaqVKKAYRKAiLkvHPDKl~q~gas~EqK~IAe~VF~~LneAwe~F~deE 847 (848)
.-|+-|+|...+|+.+||+||||+++++||||++.. . -|+..|..|++||++|+|.+
T Consensus 4 dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~---~----~a~~~f~~i~~AYevLsd~~ 60 (369)
T PRK14288 4 SYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGD---K----EAEEKFKLINEAYGVLSDEK 60 (369)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc---c----HHHHHHHHHHHHHHHhccHH
Confidence 457889999999999999999999999999998632 1 37889999999999999875
No 8
>PRK14296 chaperone protein DnaJ; Provisional
Probab=98.34 E-value=3.5e-07 Score=99.88 Aligned_cols=56 Identities=16% Similarity=0.239 Sum_probs=49.5
Q ss_pred CCCcccCccccCChhhHHHHHHhhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhhc
Q 003099 784 SGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSEE 847 (848)
Q Consensus 784 ~gWkpVgmtdL~tpaqVKKAYRKAiLkvHPDKl~q~gas~EqK~IAe~VF~~LneAwe~F~deE 847 (848)
.-|.-|+|...+++.+||+||||+++++|||+++. . -|...|..|++||++|+|.+
T Consensus 5 dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~-~-------~a~~~F~~i~~AyevLsD~~ 60 (372)
T PRK14296 5 DYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKS-P-------DAHDKMVEINEAADVLLDKD 60 (372)
T ss_pred CHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-c-------hHHHHHHHHHHHHHHhcCHH
Confidence 34788999999999999999999999999999863 1 27789999999999999976
No 9
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=98.33 E-value=5.8e-07 Score=94.56 Aligned_cols=64 Identities=20% Similarity=0.352 Sum_probs=57.4
Q ss_pred CCCCcccCccccCChhhHHHHHHhhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhh
Q 003099 783 DSGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSE 846 (848)
Q Consensus 783 ~~gWkpVgmtdL~tpaqVKKAYRKAiLkvHPDKl~q~gas~EqK~IAe~VF~~LneAwe~F~de 846 (848)
..-++-|+++.-+|+.+||++||++++.+||||+...+.+++....|...|..|++||++++..
T Consensus 200 ~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~~ 263 (267)
T PRK09430 200 EDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKKQ 263 (267)
T ss_pred HhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHh
Confidence 3456788999999999999999999999999999887778887788999999999999999864
No 10
>PRK14279 chaperone protein DnaJ; Provisional
Probab=98.30 E-value=5.5e-07 Score=98.98 Aligned_cols=57 Identities=23% Similarity=0.334 Sum_probs=50.3
Q ss_pred CCCcccCccccCChhhHHHHHHhhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhhc
Q 003099 784 SGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSEE 847 (848)
Q Consensus 784 ~gWkpVgmtdL~tpaqVKKAYRKAiLkvHPDKl~q~gas~EqK~IAe~VF~~LneAwe~F~deE 847 (848)
.-|.-|+|..-+++.+||+||||+++++||||++.. . -|...|..|++||++|+|.+
T Consensus 10 Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~---~----~a~~~f~~i~~Ay~vLsD~~ 66 (392)
T PRK14279 10 DFYKELGVSSDASAEEIKKAYRKLARELHPDANPGD---P----AAEERFKAVSEAHDVLSDPA 66 (392)
T ss_pred CHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC---h----HHHHHHHHHHHHHHHhcchh
Confidence 457889999999999999999999999999998632 1 37789999999999999976
No 11
>PRK14285 chaperone protein DnaJ; Provisional
Probab=98.28 E-value=6.4e-07 Score=97.56 Aligned_cols=57 Identities=26% Similarity=0.398 Sum_probs=49.7
Q ss_pred CCCcccCccccCChhhHHHHHHhhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhhc
Q 003099 784 SGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSEE 847 (848)
Q Consensus 784 ~gWkpVgmtdL~tpaqVKKAYRKAiLkvHPDKl~q~gas~EqK~IAe~VF~~LneAwe~F~deE 847 (848)
.-|.-|+|...+|+.+||+|||++++.+||||++.. . -|...|..|++||++|+|.+
T Consensus 4 d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~---~----~a~~~f~~i~~Ay~vL~d~~ 60 (365)
T PRK14285 4 DYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGN---K----EAESIFKEATEAYEVLIDDN 60 (365)
T ss_pred CHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC---H----HHHHHHHHHHHHHHHHcCcc
Confidence 347789999999999999999999999999998632 1 37789999999999999875
No 12
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=9.8e-07 Score=98.95 Aligned_cols=63 Identities=27% Similarity=0.376 Sum_probs=56.1
Q ss_pred cCCCCCCcccCccccCChhhHHHHHHhhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhh
Q 003099 780 LGPDSGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSE 846 (848)
Q Consensus 780 LWp~~gWkpVgmtdL~tpaqVKKAYRKAiLkvHPDKl~q~gas~EqK~IAe~VF~~LneAwe~F~de 846 (848)
+|.-.-|--|++..-+|+.+||+|||+.++.+||||+. ++++|-.|+.+|..|..||++|+|.
T Consensus 6 ~~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~----dpd~K~~AE~~F~~i~~AyEVLsDp 68 (546)
T KOG0718|consen 6 LDEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHT----DPDQKKAAEEKFQRIQRAYEVLSDP 68 (546)
T ss_pred cchhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccC----ChhHHHHHHHHHHHHHHHHHHhcCh
Confidence 44335566789999999999999999999999999986 5789999999999999999999985
No 13
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=1.4e-06 Score=93.45 Aligned_cols=55 Identities=38% Similarity=0.536 Sum_probs=49.1
Q ss_pred CcccCccccCChhhHHHHHHhhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhhc
Q 003099 786 WHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSEE 847 (848)
Q Consensus 786 WkpVgmtdL~tpaqVKKAYRKAiLkvHPDKl~q~gas~EqK~IAe~VF~~LneAwe~F~deE 847 (848)
+.-|||...+|+.+|+|+|++-+|.|||||+|. +|+ |..-|..|.+||.+|.|++
T Consensus 8 Y~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~---dP~----A~ekFq~L~eAy~VL~D~~ 62 (296)
T KOG0691|consen 8 YDLLGISEDATDAEIKKAYRKKALQYHPDKNPG---DPQ----AAEKFQELSEAYEVLSDEE 62 (296)
T ss_pred HHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCC---ChH----HHHHHHHHHHHHHHhcCHH
Confidence 456899999999999999999999999999985 333 8899999999999999864
No 14
>PRK14299 chaperone protein DnaJ; Provisional
Probab=98.19 E-value=1.2e-06 Score=92.63 Aligned_cols=56 Identities=21% Similarity=0.319 Sum_probs=48.8
Q ss_pred CCCcccCccccCChhhHHHHHHhhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhhc
Q 003099 784 SGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSEE 847 (848)
Q Consensus 784 ~gWkpVgmtdL~tpaqVKKAYRKAiLkvHPDKl~q~gas~EqK~IAe~VF~~LneAwe~F~deE 847 (848)
.-|.-|+|..-+|+.+||+|||++++.+|||+++.. -|+..|..|++||++|++.+
T Consensus 5 d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~--------~~~~~f~~i~~Ay~~L~d~~ 60 (291)
T PRK14299 5 DYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSP--------GAEEKFKEINEAYTVLSDPE 60 (291)
T ss_pred CHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCh--------hHHHHHHHHHHHHHHhcCHH
Confidence 446788999999999999999999999999998631 26788999999999999864
No 15
>PRK14286 chaperone protein DnaJ; Provisional
Probab=98.18 E-value=1.2e-06 Score=95.62 Aligned_cols=57 Identities=25% Similarity=0.361 Sum_probs=49.5
Q ss_pred CCCcccCccccCChhhHHHHHHhhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhhc
Q 003099 784 SGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSEE 847 (848)
Q Consensus 784 ~gWkpVgmtdL~tpaqVKKAYRKAiLkvHPDKl~q~gas~EqK~IAe~VF~~LneAwe~F~deE 847 (848)
.-|.-|+|..-+|..+||+|||++++++|||+++.. . .|...|..|++||++|+|.+
T Consensus 5 d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~---~----~a~~~f~~i~~Ay~vL~d~~ 61 (372)
T PRK14286 5 SYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGN---K----ESEEKFKEATEAYEILRDPK 61 (372)
T ss_pred CHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc---h----HHHHHHHHHHHHHHHhccHH
Confidence 346788999999999999999999999999998631 1 37789999999999999865
No 16
>PRK14295 chaperone protein DnaJ; Provisional
Probab=98.18 E-value=1.4e-06 Score=95.69 Aligned_cols=58 Identities=28% Similarity=0.385 Sum_probs=51.0
Q ss_pred CCCCcccCccccCChhhHHHHHHhhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhhc
Q 003099 783 DSGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSEE 847 (848)
Q Consensus 783 ~~gWkpVgmtdL~tpaqVKKAYRKAiLkvHPDKl~q~gas~EqK~IAe~VF~~LneAwe~F~deE 847 (848)
..-|.-|+|..-+++.+||+|||++++.+|||+++.. ..|+..|..|++||++|+|.+
T Consensus 9 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~-------~~a~~~f~~i~~Ay~vL~d~~ 66 (389)
T PRK14295 9 KDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGD-------AKAEERFKEISEAYDVLSDEK 66 (389)
T ss_pred cCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCc-------hhHHHHHHHHHHHHHHHCchh
Confidence 3568899999999999999999999999999998642 137889999999999999875
No 17
>PRK14278 chaperone protein DnaJ; Provisional
Probab=98.17 E-value=1.4e-06 Score=95.28 Aligned_cols=56 Identities=21% Similarity=0.328 Sum_probs=49.5
Q ss_pred CCCcccCccccCChhhHHHHHHhhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhhc
Q 003099 784 SGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSEE 847 (848)
Q Consensus 784 ~gWkpVgmtdL~tpaqVKKAYRKAiLkvHPDKl~q~gas~EqK~IAe~VF~~LneAwe~F~deE 847 (848)
.-|.-|+|...+++.+||+|||++++++|||+++. . -|...|..|++||++|+|.+
T Consensus 4 d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~----~----~a~~~f~~i~~Ay~vL~d~~ 59 (378)
T PRK14278 4 DYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPD----E----EAQEKFKEISVAYEVLSDPE 59 (378)
T ss_pred CcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCc----H----HHHHHHHHHHHHHHHhchhh
Confidence 45788999999999999999999999999999862 1 37789999999999999875
No 18
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=98.17 E-value=0.00035 Score=77.84 Aligned_cols=21 Identities=38% Similarity=0.710 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 003099 519 ERVKRQRELEIERLRRIEEER 539 (848)
Q Consensus 519 e~~ererE~eKe~~r~~~E~~ 539 (848)
+.+..++..+-++++++++++
T Consensus 90 eel~~~~~~eq~rlk~le~er 110 (387)
T PRK09510 90 EELQQKQAAEQERLKQLEKER 110 (387)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555544443
No 19
>PRK14277 chaperone protein DnaJ; Provisional
Probab=98.17 E-value=1.4e-06 Score=95.54 Aligned_cols=57 Identities=23% Similarity=0.321 Sum_probs=50.1
Q ss_pred CCCcccCccccCChhhHHHHHHhhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhhc
Q 003099 784 SGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSEE 847 (848)
Q Consensus 784 ~gWkpVgmtdL~tpaqVKKAYRKAiLkvHPDKl~q~gas~EqK~IAe~VF~~LneAwe~F~deE 847 (848)
.-|.-|+|..-++..+||+|||++++.+|||+++.. . .|+..|..|++||++|+|..
T Consensus 6 d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~---~----~a~~~f~~i~~Ay~vL~d~~ 62 (386)
T PRK14277 6 DYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGD---K----EAEQKFKEINEAYEILSDPQ 62 (386)
T ss_pred CHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCc---h----HHHHHHHHHHHHHHHhCCHH
Confidence 557889999999999999999999999999998632 1 37789999999999999864
No 20
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=98.15 E-value=1.6e-06 Score=92.17 Aligned_cols=56 Identities=23% Similarity=0.358 Sum_probs=49.1
Q ss_pred CCCcccCccccCChhhHHHHHHhhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhhc
Q 003099 784 SGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSEE 847 (848)
Q Consensus 784 ~gWkpVgmtdL~tpaqVKKAYRKAiLkvHPDKl~q~gas~EqK~IAe~VF~~LneAwe~F~deE 847 (848)
.-|.-|+|...++..+||+|||++++++|||+++.. .|+..|..|++||++|++..
T Consensus 5 d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~--------~~~~~f~~i~~Ay~~L~~~~ 60 (306)
T PRK10266 5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEP--------DAEARFKEVAEAWEVLSDEQ 60 (306)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc--------cHHHHHHHHHHHHHHhhhHH
Confidence 447788999999999999999999999999996521 47899999999999999864
No 21
>PRK14294 chaperone protein DnaJ; Provisional
Probab=98.15 E-value=1.6e-06 Score=94.39 Aligned_cols=57 Identities=23% Similarity=0.365 Sum_probs=49.6
Q ss_pred CCCcccCccccCChhhHHHHHHhhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhhc
Q 003099 784 SGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSEE 847 (848)
Q Consensus 784 ~gWkpVgmtdL~tpaqVKKAYRKAiLkvHPDKl~q~gas~EqK~IAe~VF~~LneAwe~F~deE 847 (848)
.-|.-|+|..-++..+||+|||++++++|||+++.. . .|+..|..|++||++|+|..
T Consensus 5 d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~---~----~~~~~f~~~~~Ay~vL~d~~ 61 (366)
T PRK14294 5 DYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGD---K----EAEELFKEAAEAYEVLSDPK 61 (366)
T ss_pred ChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc---h----HHHHHHHHHHHHHHHhccHH
Confidence 457788999999999999999999999999998642 1 36789999999999999864
No 22
>PRK14283 chaperone protein DnaJ; Provisional
Probab=98.15 E-value=1.7e-06 Score=94.50 Aligned_cols=56 Identities=25% Similarity=0.376 Sum_probs=49.9
Q ss_pred CCCcccCccccCChhhHHHHHHhhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhhc
Q 003099 784 SGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSEE 847 (848)
Q Consensus 784 ~gWkpVgmtdL~tpaqVKKAYRKAiLkvHPDKl~q~gas~EqK~IAe~VF~~LneAwe~F~deE 847 (848)
.-|.-|+|...+++.+||+|||++++++|||+++.. -|...|..|++||++|+|..
T Consensus 6 d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~--------~a~~~f~~i~~Ay~~Lsd~~ 61 (378)
T PRK14283 6 DYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEE--------GAEEKFKEISEAYAVLSDDE 61 (378)
T ss_pred ChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc--------cHHHHHHHHHHHHHHhchhH
Confidence 457889999999999999999999999999998631 27889999999999999865
No 23
>PRK14291 chaperone protein DnaJ; Provisional
Probab=98.15 E-value=1.7e-06 Score=94.81 Aligned_cols=56 Identities=25% Similarity=0.367 Sum_probs=49.1
Q ss_pred CCCcccCccccCChhhHHHHHHhhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhhc
Q 003099 784 SGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSEE 847 (848)
Q Consensus 784 ~gWkpVgmtdL~tpaqVKKAYRKAiLkvHPDKl~q~gas~EqK~IAe~VF~~LneAwe~F~deE 847 (848)
.-|.-|+|...++..+||+|||++++.+|||+++.. -|...|..|++||++|+|..
T Consensus 4 d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~--------~~~~~f~~i~~Ay~vLsd~~ 59 (382)
T PRK14291 4 DYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNP--------EAEEKFKEINEAYQVLSDPE 59 (382)
T ss_pred CHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc--------cHHHHHHHHHHHHHHhcCHH
Confidence 346789999999999999999999999999998631 26788999999999999865
No 24
>PRK10767 chaperone protein DnaJ; Provisional
Probab=98.14 E-value=1.8e-06 Score=93.89 Aligned_cols=57 Identities=25% Similarity=0.401 Sum_probs=49.7
Q ss_pred CCCcccCccccCChhhHHHHHHhhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhhc
Q 003099 784 SGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSEE 847 (848)
Q Consensus 784 ~gWkpVgmtdL~tpaqVKKAYRKAiLkvHPDKl~q~gas~EqK~IAe~VF~~LneAwe~F~deE 847 (848)
.-|.-|+|..-++..+||+|||++++.+|||+++.. ..|...|..|++||++|++..
T Consensus 5 d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~-------~~a~~~f~~i~~Ay~~L~d~~ 61 (371)
T PRK10767 5 DYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGD-------KEAEEKFKEIKEAYEVLSDPQ 61 (371)
T ss_pred ChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc-------HHHHHHHHHHHHHHHHhcchh
Confidence 457889999999999999999999999999998631 137889999999999999864
No 25
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=98.14 E-value=1.6e-06 Score=96.52 Aligned_cols=53 Identities=28% Similarity=0.437 Sum_probs=46.9
Q ss_pred CCCcccCccccCChhhHHHHHHhhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhhc
Q 003099 784 SGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSEE 847 (848)
Q Consensus 784 ~gWkpVgmtdL~tpaqVKKAYRKAiLkvHPDKl~q~gas~EqK~IAe~VF~~LneAwe~F~deE 847 (848)
.-|.-|||+..+|+.+||+||||+++++||||++. ...|..|++||++|+|.+
T Consensus 29 d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~-----------~e~F~~i~~AYevLsD~~ 81 (421)
T PTZ00037 29 KLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD-----------PEKFKEISRAYEVLSDPE 81 (421)
T ss_pred hHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCch-----------HHHHHHHHHHHHHhccHH
Confidence 34788999999999999999999999999999741 258999999999999875
No 26
>PRK14280 chaperone protein DnaJ; Provisional
Probab=98.13 E-value=1.9e-06 Score=94.24 Aligned_cols=56 Identities=21% Similarity=0.394 Sum_probs=49.3
Q ss_pred CCCcccCccccCChhhHHHHHHhhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhhc
Q 003099 784 SGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSEE 847 (848)
Q Consensus 784 ~gWkpVgmtdL~tpaqVKKAYRKAiLkvHPDKl~q~gas~EqK~IAe~VF~~LneAwe~F~deE 847 (848)
.-|.-|+|+..+++.+||+|||++++.+|||+++.. -|+..|..|++||++|+|..
T Consensus 5 ~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~--------~a~~~f~~i~~Ay~vL~d~~ 60 (376)
T PRK14280 5 DYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEE--------GADEKFKEISEAYEVLSDDQ 60 (376)
T ss_pred ChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc--------cHHHHHHHHHHHHHHhccHh
Confidence 457789999999999999999999999999998632 26789999999999999865
No 27
>PRK14276 chaperone protein DnaJ; Provisional
Probab=98.13 E-value=1.9e-06 Score=94.27 Aligned_cols=56 Identities=21% Similarity=0.367 Sum_probs=49.2
Q ss_pred CCCcccCccccCChhhHHHHHHhhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhhc
Q 003099 784 SGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSEE 847 (848)
Q Consensus 784 ~gWkpVgmtdL~tpaqVKKAYRKAiLkvHPDKl~q~gas~EqK~IAe~VF~~LneAwe~F~deE 847 (848)
.-|.-|+|...+|..+||+|||++++.+|||+++.. -|...|..|++||++|+|.+
T Consensus 5 d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~--------~a~~~f~~i~~Ay~vL~d~~ 60 (380)
T PRK14276 5 EYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEP--------GAEEKYKEVQEAYETLSDPQ 60 (380)
T ss_pred CHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc--------CHHHHHHHHHHHHHHhcCHh
Confidence 457789999999999999999999999999998632 26778999999999999865
No 28
>PRK14287 chaperone protein DnaJ; Provisional
Probab=98.13 E-value=1.8e-06 Score=94.32 Aligned_cols=56 Identities=27% Similarity=0.363 Sum_probs=49.0
Q ss_pred CCCcccCccccCChhhHHHHHHhhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhhc
Q 003099 784 SGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSEE 847 (848)
Q Consensus 784 ~gWkpVgmtdL~tpaqVKKAYRKAiLkvHPDKl~q~gas~EqK~IAe~VF~~LneAwe~F~deE 847 (848)
.-|.-|+|..-++..+||+|||++++.+|||+++.. -|+..|..|++||++|+|.+
T Consensus 5 d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~--------~~~~~f~~i~~Ay~~L~d~~ 60 (371)
T PRK14287 5 DYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAP--------DAEDKFKEVKEAYDTLSDPQ 60 (371)
T ss_pred CHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCh--------hHHHHHHHHHHHHHHhCcHh
Confidence 347789999999999999999999999999997521 26789999999999999875
No 29
>PRK14282 chaperone protein DnaJ; Provisional
Probab=98.12 E-value=2.2e-06 Score=93.45 Aligned_cols=58 Identities=19% Similarity=0.371 Sum_probs=50.4
Q ss_pred CCCcccCccccCChhhHHHHHHhhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhhc
Q 003099 784 SGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSEE 847 (848)
Q Consensus 784 ~gWkpVgmtdL~tpaqVKKAYRKAiLkvHPDKl~q~gas~EqK~IAe~VF~~LneAwe~F~deE 847 (848)
.-|+-|+|+..+|+.+||+|||++++++|||+++.. .-.|+..|..|++||++|+|.+
T Consensus 5 d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~------~~~a~~~f~~i~~Ay~vL~d~~ 62 (369)
T PRK14282 5 DYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPEN------RKEAEQKFKEIQEAYEVLSDPQ 62 (369)
T ss_pred ChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccc------hhHHHHHHHHHHHHHHHhcChh
Confidence 457889999999999999999999999999998631 1137889999999999999875
No 30
>PRK14281 chaperone protein DnaJ; Provisional
Probab=98.10 E-value=2.6e-06 Score=93.81 Aligned_cols=57 Identities=26% Similarity=0.428 Sum_probs=49.3
Q ss_pred CCCcccCccccCChhhHHHHHHhhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhhc
Q 003099 784 SGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSEE 847 (848)
Q Consensus 784 ~gWkpVgmtdL~tpaqVKKAYRKAiLkvHPDKl~q~gas~EqK~IAe~VF~~LneAwe~F~deE 847 (848)
.-|.-|+|+.-++..+||+|||++++.+|||+++.. ..|...|..|++||++|+|..
T Consensus 4 d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~-------~~a~~~f~~i~~Ay~vL~d~~ 60 (397)
T PRK14281 4 DYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDN-------KEAEEHFKEVNEAYEVLSNDD 60 (397)
T ss_pred ChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCc-------hHHHHHHHHHHHHHHHhhhhh
Confidence 346788999999999999999999999999998632 136789999999999999864
No 31
>PRK14301 chaperone protein DnaJ; Provisional
Probab=98.08 E-value=2.9e-06 Score=92.75 Aligned_cols=57 Identities=26% Similarity=0.391 Sum_probs=49.2
Q ss_pred CCCcccCccccCChhhHHHHHHhhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhhc
Q 003099 784 SGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSEE 847 (848)
Q Consensus 784 ~gWkpVgmtdL~tpaqVKKAYRKAiLkvHPDKl~q~gas~EqK~IAe~VF~~LneAwe~F~deE 847 (848)
.-|.-|+|..-+|..+||+|||++++.+||||++... -|+..|..|++||++|++..
T Consensus 5 ~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~-------~a~~~f~~i~~Ay~vL~d~~ 61 (373)
T PRK14301 5 DYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNP-------EAEQKFKEAAEAYEVLRDAE 61 (373)
T ss_pred ChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCCh-------HHHHHHHHHHHHHHHhcchh
Confidence 4477889999999999999999999999999986421 36778999999999999865
No 32
>PRK14297 chaperone protein DnaJ; Provisional
Probab=98.07 E-value=2.9e-06 Score=92.82 Aligned_cols=57 Identities=25% Similarity=0.390 Sum_probs=49.8
Q ss_pred CCCcccCccccCChhhHHHHHHhhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhhc
Q 003099 784 SGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSEE 847 (848)
Q Consensus 784 ~gWkpVgmtdL~tpaqVKKAYRKAiLkvHPDKl~q~gas~EqK~IAe~VF~~LneAwe~F~deE 847 (848)
.-|.-|+|+.-+|..+||+|||++++.+|||+++.. ..|+..|..|++||++|+|.+
T Consensus 5 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~-------~~a~~~f~~i~~Ay~vL~d~~ 61 (380)
T PRK14297 5 DYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGN-------KEAEEKFKEINEAYQVLSDPQ 61 (380)
T ss_pred ChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-------HHHHHHHHHHHHHHHHhcCHh
Confidence 457889999999999999999999999999998642 137789999999999999864
No 33
>PRK14298 chaperone protein DnaJ; Provisional
Probab=98.07 E-value=2.8e-06 Score=93.10 Aligned_cols=56 Identities=29% Similarity=0.430 Sum_probs=49.3
Q ss_pred CCCcccCccccCChhhHHHHHHhhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhhc
Q 003099 784 SGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSEE 847 (848)
Q Consensus 784 ~gWkpVgmtdL~tpaqVKKAYRKAiLkvHPDKl~q~gas~EqK~IAe~VF~~LneAwe~F~deE 847 (848)
.-|.-|+|..-++..+||+|||++++++|||+++.. -|+..|..|++||++|+|.+
T Consensus 6 d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~--------~~~~~f~~i~~Ay~vL~d~~ 61 (377)
T PRK14298 6 DYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEP--------DAEEKFKEISEAYAVLSDAE 61 (377)
T ss_pred CHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCCh--------hHHHHHHHHHHHHHHhcchH
Confidence 457889999999999999999999999999998621 26789999999999999875
No 34
>PRK14300 chaperone protein DnaJ; Provisional
Probab=98.07 E-value=3.4e-06 Score=92.11 Aligned_cols=57 Identities=25% Similarity=0.378 Sum_probs=49.7
Q ss_pred CCCCcccCccccCChhhHHHHHHhhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhhc
Q 003099 783 DSGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSEE 847 (848)
Q Consensus 783 ~~gWkpVgmtdL~tpaqVKKAYRKAiLkvHPDKl~q~gas~EqK~IAe~VF~~LneAwe~F~deE 847 (848)
..-|+-|+|..-+|+.+||+|||++++.+|||+++. . .|+..|..|++||++|++..
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~-~-------~~~~~f~~i~~Ay~~L~d~~ 59 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDA-K-------DAEKKFKEINAAYDVLKDEQ 59 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-c-------CHHHHHHHHHHHHHHhhhHh
Confidence 356888999999999999999999999999999862 1 26678999999999999864
No 35
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=2.9e-06 Score=95.10 Aligned_cols=57 Identities=23% Similarity=0.353 Sum_probs=50.3
Q ss_pred CCCcccCccccCChhhHHHHHHhhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhh
Q 003099 784 SGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSE 846 (848)
Q Consensus 784 ~gWkpVgmtdL~tpaqVKKAYRKAiLkvHPDKl~q~gas~EqK~IAe~VF~~LneAwe~F~de 846 (848)
|.|.-|+|..-+++..||++|||++|.+||||++. . ..-|...|..|+.||++|+|-
T Consensus 9 c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd---~---ieeat~~F~~i~aAYeVLSdp 65 (508)
T KOG0717|consen 9 CYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPD---R---IEEATQQFQLIQAAYEVLSDP 65 (508)
T ss_pred HHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCc---c---HHHHHHHHHHHHHHHHHhcCh
Confidence 66788999999999999999999999999999863 2 235889999999999999873
No 36
>PRK14293 chaperone protein DnaJ; Provisional
Probab=98.01 E-value=5.4e-06 Score=90.57 Aligned_cols=56 Identities=20% Similarity=0.316 Sum_probs=49.5
Q ss_pred CCCcccCccccCChhhHHHHHHhhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhhc
Q 003099 784 SGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSEE 847 (848)
Q Consensus 784 ~gWkpVgmtdL~tpaqVKKAYRKAiLkvHPDKl~q~gas~EqK~IAe~VF~~LneAwe~F~deE 847 (848)
+-|.-|+|+..+++.+||+|||++++.+|||+++.. .|...|..|++||++|++..
T Consensus 4 d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~--------~a~~~f~~i~~Ay~vL~~~~ 59 (374)
T PRK14293 4 DYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEP--------GAEDRFKEINRAYEVLSDPE 59 (374)
T ss_pred ChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc--------CHHHHHHHHHHHHHHHhchH
Confidence 457889999999999999999999999999998632 26789999999999999875
No 37
>PRK14290 chaperone protein DnaJ; Provisional
Probab=98.00 E-value=6e-06 Score=89.97 Aligned_cols=59 Identities=20% Similarity=0.298 Sum_probs=50.9
Q ss_pred CCCCcccCccccCChhhHHHHHHhhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhhc
Q 003099 783 DSGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSEE 847 (848)
Q Consensus 783 ~~gWkpVgmtdL~tpaqVKKAYRKAiLkvHPDKl~q~gas~EqK~IAe~VF~~LneAwe~F~deE 847 (848)
-+-|.-|+|+..+|..+||+|||++++.+|||+++.. ...|...|..|++||++|+|..
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~------~~~a~~~f~~i~~Ay~~L~d~~ 61 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGN------KAEAEEKFKEISEAYEVLSDPQ 61 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc------hhHHHHHHHHHHHHHHHhcChh
Confidence 3567889999999999999999999999999997631 1248899999999999999875
No 38
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=6.3e-06 Score=86.35 Aligned_cols=60 Identities=27% Similarity=0.430 Sum_probs=54.1
Q ss_pred CCCcccCccccCChhhHHHHHHhhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhhcC
Q 003099 784 SGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSEER 848 (848)
Q Consensus 784 ~gWkpVgmtdL~tpaqVKKAYRKAiLkvHPDKl~q~gas~EqK~IAe~VF~~LneAwe~F~deEr 848 (848)
+-|.-|||..-+++..|++||+|..|.+|||+++ -+++--|.--|+.|+.||.+|+|+++
T Consensus 15 d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~-----eed~~ea~~kFq~l~k~y~iLsDeek 74 (264)
T KOG0719|consen 15 DLYEVLGVERDATDKEIRKAYHKLALRLHPDKNH-----EEDKVEATEKFQQLQKAYQILSDEEK 74 (264)
T ss_pred CHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcch-----hhhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 5577889999999999999999999999999986 35677889999999999999999874
No 39
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=1.2e-05 Score=76.01 Aligned_cols=57 Identities=26% Similarity=0.415 Sum_probs=48.9
Q ss_pred CCcccCccccCChhhHHHHHHhhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhhc
Q 003099 785 GWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSEE 847 (848)
Q Consensus 785 gWkpVgmtdL~tpaqVKKAYRKAiLkvHPDKl~q~gas~EqK~IAe~VF~~LneAwe~F~deE 847 (848)
.|.-|+|...++...|+++||++++.+|||+++... . .|...|..+++||.+|++..
T Consensus 8 ~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~---~---~a~~~f~~i~~Ay~vLsd~~ 64 (237)
T COG2214 8 YYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDP---K---VAEEKFKEINEAYEILSDPE 64 (237)
T ss_pred HHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCch---h---HHHHHHHHHHHHHHHhhCHH
Confidence 355678888999999999999999999999998522 1 68899999999999998854
No 40
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=1.2e-05 Score=85.59 Aligned_cols=55 Identities=27% Similarity=0.372 Sum_probs=46.6
Q ss_pred CCcccCccccCChhhHHHHHHhhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhh
Q 003099 785 GWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSE 846 (848)
Q Consensus 785 gWkpVgmtdL~tpaqVKKAYRKAiLkvHPDKl~q~gas~EqK~IAe~VF~~LneAwe~F~de 846 (848)
-+.-||+...+|..+|||+||++++++||||.+.. + -+...|+.||.||++|+|-
T Consensus 33 LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~---P----~~~dkf~eIN~Ay~ILsD~ 87 (279)
T KOG0716|consen 33 LYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDN---P----EATDKFKEINTAYAILSDP 87 (279)
T ss_pred HHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCC---c----hhHHHHHHHHHHHHHhcCh
Confidence 35567888899999999999999999999999752 2 2568899999999999873
No 41
>PHA03102 Small T antigen; Reviewed
Probab=97.88 E-value=1.4e-05 Score=79.01 Aligned_cols=47 Identities=28% Similarity=0.413 Sum_probs=38.9
Q ss_pred cCccccC--ChhhHHHHHHhhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhh
Q 003099 789 IPLTEVI--TSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSE 846 (848)
Q Consensus 789 VgmtdL~--tpaqVKKAYRKAiLkvHPDKl~q~gas~EqK~IAe~VF~~LneAwe~F~de 846 (848)
|||...+ |..+||+|||++++.+||||.+ + ...|..||+||.+|++.
T Consensus 11 LGl~~~A~~s~~eIKkAYr~la~~~HPDkgg----~-------~e~~k~in~Ay~~L~d~ 59 (153)
T PHA03102 11 LGLPRSAWGNLPLMRKAYLRKCLEFHPDKGG----D-------EEKMKELNTLYKKFRES 59 (153)
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHCcCCCc----h-------hHHHHHHHHHHHHHhhH
Confidence 3455556 8999999999999999999953 2 25899999999999875
No 42
>PRK14289 chaperone protein DnaJ; Provisional
Probab=97.87 E-value=1.1e-05 Score=88.29 Aligned_cols=57 Identities=26% Similarity=0.396 Sum_probs=49.7
Q ss_pred CCCcccCccccCChhhHHHHHHhhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhhc
Q 003099 784 SGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSEE 847 (848)
Q Consensus 784 ~gWkpVgmtdL~tpaqVKKAYRKAiLkvHPDKl~q~gas~EqK~IAe~VF~~LneAwe~F~deE 847 (848)
.-|.-|+|..-+|..+||+|||++++.+|||+++.. . .|...|..|++||++|++..
T Consensus 6 ~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~---~----~a~~~f~~i~~Ay~~L~d~~ 62 (386)
T PRK14289 6 DYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGD---K----EAEEKFKEAAEAYDVLSDPD 62 (386)
T ss_pred CHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC---h----HHHHHHHHHHHHHHHhcCHH
Confidence 457788999999999999999999999999998742 1 37789999999999999875
No 43
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=97.81 E-value=3.3e-05 Score=76.89 Aligned_cols=57 Identities=18% Similarity=0.312 Sum_probs=46.8
Q ss_pred ccCccc--cCChhhHHHHHHhhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhh
Q 003099 788 PIPLTE--VITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSE 846 (848)
Q Consensus 788 pVgmtd--L~tpaqVKKAYRKAiLkvHPDKl~q~gas~EqK~IAe~VF~~LneAwe~F~de 846 (848)
-+||.. -+++..|+++|+++...+|||+... .+...+.+|...|..||+||.+|++-
T Consensus 6 llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~--~~~~~~~~a~~~s~~iN~AY~~L~dp 64 (171)
T PRK05014 6 LFGLPARYDIDTQLLASRYQELQRQFHPDKFAN--ASERERLLAVQQAATINDAYQTLKHP 64 (171)
T ss_pred HCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCC--CcHHHHHHHHHHHHHHHHHHHHHCCh
Confidence 345555 4788999999999999999999874 34456677888999999999999874
No 44
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=97.79 E-value=1.8e-05 Score=95.25 Aligned_cols=56 Identities=13% Similarity=0.069 Sum_probs=49.6
Q ss_pred CCCcccCccccCChhhHHHHHHhhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhhc
Q 003099 784 SGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSEE 847 (848)
Q Consensus 784 ~gWkpVgmtdL~tpaqVKKAYRKAiLkvHPDKl~q~gas~EqK~IAe~VF~~LneAwe~F~deE 847 (848)
.-+.-||+...+|+..||+||||+++.+||||++.. .|...|..|++||.+|+|..
T Consensus 574 dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~--------~A~ekFq~I~EAYeVLSDp~ 629 (1136)
T PTZ00341 574 LFYDILGVGVNADMKEISERYFKLAENYYPPKRSGN--------EGFHKFKKINEAYQILGDID 629 (1136)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--------hHHHHHHHHHHHHHHhCCHH
Confidence 457789999999999999999999999999998631 26779999999999999875
No 45
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=3.2e-05 Score=82.60 Aligned_cols=63 Identities=24% Similarity=0.390 Sum_probs=56.2
Q ss_pred cccCCCCCCcccCccccCChhhHHHHHHhhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhhcC
Q 003099 778 YILGPDSGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSEER 848 (848)
Q Consensus 778 ~VLWp~~gWkpVgmtdL~tpaqVKKAYRKAiLkvHPDKl~q~gas~EqK~IAe~VF~~LneAwe~F~deEr 848 (848)
.++|....+.-||+..-+|..+||+||++++.++|||-+... .|...|..|.+||++|+++++
T Consensus 38 ~~~~~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~--------~a~~kF~eI~~AYEiLsd~eK 100 (288)
T KOG0715|consen 38 RIISKEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDK--------EASKKFKEISEAYEILSDEEK 100 (288)
T ss_pred ccCCCcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCc--------chhhHHHHHHHHHHHhcCHHH
Confidence 356666788899999999999999999999999999998753 589999999999999999874
No 46
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=3.2e-05 Score=79.82 Aligned_cols=55 Identities=29% Similarity=0.558 Sum_probs=46.7
Q ss_pred CcccCccccCChhhHHHHHHhhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhh
Q 003099 786 WHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSE 846 (848)
Q Consensus 786 WkpVgmtdL~tpaqVKKAYRKAiLkvHPDKl~q~gas~EqK~IAe~VF~~LneAwe~F~de 846 (848)
|.-|.|..-++..+||+-||++.|.|||||++.+ ..-|+..|++|..||..|-+.
T Consensus 56 feVLqIdpev~~edikkryRklSilVHPDKN~Dd------~~rAqkAFdivkKA~k~l~n~ 110 (250)
T KOG1150|consen 56 FEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDD------AERAQKAFDIVKKAYKLLEND 110 (250)
T ss_pred HHHHhcCCCCCHHHHHHHHHhhheeecCCCCccc------HHHHHHHHHHHHHHHHHHhCH
Confidence 4556777888999999999999999999999842 236999999999999988653
No 47
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=97.66 E-value=0.0071 Score=66.25 Aligned_cols=10 Identities=10% Similarity=0.252 Sum_probs=6.6
Q ss_pred hhhhhhcccc
Q 003099 654 RIFSEKFSAS 663 (848)
Q Consensus 654 ~~~~~~f~~~ 663 (848)
..+.|+|++.
T Consensus 259 aaldD~fg~l 268 (387)
T COG3064 259 AALDDIFGGL 268 (387)
T ss_pred hhHHHHhccc
Confidence 3567888754
No 48
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=5.4e-05 Score=85.21 Aligned_cols=74 Identities=26% Similarity=0.328 Sum_probs=58.4
Q ss_pred CccHHHHHhhcccccCCCCCCcccCccccCChhhHHHHHHhhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhh
Q 003099 766 EGNLRALLSTLQYILGPDSGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNS 845 (848)
Q Consensus 766 e~NIRaLLSTL~~VLWp~~gWkpVgmtdL~tpaqVKKAYRKAiLkvHPDKl~q~gas~EqK~IAe~VF~~LneAwe~F~d 845 (848)
..|.+-+---|-.++=.-..|--+||..-+++++|||.|||.+..|||||+.+. .|+.+|..|.-||+++.+
T Consensus 218 a~n~t~~adrl~re~~~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~--------~A~Eafk~Lq~Afevig~ 289 (490)
T KOG0720|consen 218 ATNATSFADRLSRELNILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIP--------RAEEAFKKLQVAFEVIGD 289 (490)
T ss_pred ccchhhHHHhhhhhhcCCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCCh--------hHHHHHHHHHHHHHHhcc
Confidence 345555444455544223467889999999999999999999999999999853 489999999999999987
Q ss_pred hc
Q 003099 846 EE 847 (848)
Q Consensus 846 eE 847 (848)
.+
T Consensus 290 ~~ 291 (490)
T KOG0720|consen 290 SV 291 (490)
T ss_pred hh
Confidence 53
No 49
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=97.62 E-value=6.8e-05 Score=74.50 Aligned_cols=57 Identities=21% Similarity=0.303 Sum_probs=45.4
Q ss_pred CcccCcccc--CChhhHHHHHHhhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhh
Q 003099 786 WHPIPLTEV--ITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSE 846 (848)
Q Consensus 786 WkpVgmtdL--~tpaqVKKAYRKAiLkvHPDKl~q~gas~EqK~IAe~VF~~LneAwe~F~de 846 (848)
|.-+||..- ++...|+++|+++.+.+||||..+ ...+..+-..|..||+||.+|++-
T Consensus 5 f~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~----~~~k~~~~~~s~~in~AY~~L~dp 63 (166)
T PRK01356 5 FQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKT----LQEKEQNLIIASELNNAYSTLKDA 63 (166)
T ss_pred HHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC----HHHHHHHHHHHHHHHHHHHHhCCH
Confidence 344566654 788999999999999999999752 344556667899999999999874
No 50
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=97.61 E-value=9.5e-05 Score=74.10 Aligned_cols=53 Identities=21% Similarity=0.312 Sum_probs=44.4
Q ss_pred cccCChhhHHHHHHhhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhh
Q 003099 792 TEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSE 846 (848)
Q Consensus 792 tdL~tpaqVKKAYRKAiLkvHPDKl~q~gas~EqK~IAe~VF~~LneAwe~F~de 846 (848)
.--+++.+|+++||++...+|||+..+ .+...+.+|...|..||+||.+|++.
T Consensus 15 ~f~id~~~L~~~Yr~Lq~~~HPDk~~~--~~~~e~~~a~~~s~~IN~AY~~L~~p 67 (173)
T PRK00294 15 SFRLDLDQLATRYRELAREVHPDRFAD--APEREQRLALERSASLNEAYQTLKSP 67 (173)
T ss_pred CCCCCHHHHHHHHHHHHHHHCcCCCCC--CcHHHHHHHHHHHHHHHHHHHHhCCh
Confidence 334789999999999999999999864 34445667888899999999999874
No 51
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=6.7e-05 Score=78.08 Aligned_cols=57 Identities=23% Similarity=0.437 Sum_probs=48.2
Q ss_pred CCCcccCccccCChhhHHHHHHhhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhhc
Q 003099 784 SGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSEE 847 (848)
Q Consensus 784 ~gWkpVgmtdL~tpaqVKKAYRKAiLkvHPDKl~q~gas~EqK~IAe~VF~~LneAwe~F~deE 847 (848)
+-+.-|||+..++..+|||+||++.+++||||++..+. -+.-|..|+.||..|.|..
T Consensus 100 DPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~-------~e~~~~~I~KAY~aLTD~~ 156 (230)
T KOG0721|consen 100 DPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEG-------DEEFFEAIAKAYQALTDKK 156 (230)
T ss_pred CcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcch-------hHHHHHHHHHHHHHhcchh
Confidence 34667899999999999999999999999999874222 3577999999999998864
No 52
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=97.60 E-value=0.0001 Score=73.89 Aligned_cols=60 Identities=23% Similarity=0.341 Sum_probs=48.1
Q ss_pred CCcccCccc--cCChhhHHHHHHhhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhh
Q 003099 785 GWHPIPLTE--VITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSE 846 (848)
Q Consensus 785 gWkpVgmtd--L~tpaqVKKAYRKAiLkvHPDKl~q~gas~EqK~IAe~VF~~LneAwe~F~de 846 (848)
.|.-+||.. -+++.+|+++|+++...+|||+.++ .+...+.+|...|..||+||.+|++-
T Consensus 8 yf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~--~~~~e~~~a~~~s~~iN~AY~tL~~p 69 (176)
T PRK03578 8 HFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAA--AGDAEKRVAMQWATRANEAYQTLRDP 69 (176)
T ss_pred HHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--CCHHHHHHHHHHHHHHHHHHHHhCCh
Confidence 344455555 4789999999999999999999974 34455667888899999999999874
No 53
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=97.56 E-value=0.0001 Score=72.54 Aligned_cols=50 Identities=20% Similarity=0.326 Sum_probs=42.5
Q ss_pred CChhhHHHHHHhhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhh
Q 003099 795 ITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSE 846 (848)
Q Consensus 795 ~tpaqVKKAYRKAiLkvHPDKl~q~gas~EqK~IAe~VF~~LneAwe~F~de 846 (848)
|++..|+++|+++...+|||+.++. +...+.+|...|..||+||.+|++.
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~--~~~~~~~a~~~s~~iN~AY~~L~~p 52 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASG--SAQEQLAAVQQSTTLNQAYQTLKDP 52 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCC--ChhhhHHHHHHHHHHHHHHHHhCCh
Confidence 6789999999999999999998753 3344567888999999999999874
No 54
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=97.54 E-value=7.4e-05 Score=71.15 Aligned_cols=50 Identities=18% Similarity=0.282 Sum_probs=42.8
Q ss_pred CCCcccCccccCChhhHHHHHHhhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhh
Q 003099 784 SGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFN 844 (848)
Q Consensus 784 ~gWkpVgmtdL~tpaqVKKAYRKAiLkvHPDKl~q~gas~EqK~IAe~VF~~LneAwe~F~ 844 (848)
.-++-||+...+|..+|+++||++++.+|||+. | ++ ..|..|++||++|.
T Consensus 66 eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkg---G-s~-------~~~~kIneAyevL~ 115 (116)
T PTZ00100 66 EAYKILNISPTASKERIREAHKQLMLRNHPDNG---G-ST-------YIASKVNEAKDLLL 115 (116)
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCC---C-CH-------HHHHHHHHHHHHHh
Confidence 456788999999999999999999999999983 2 32 47889999999985
No 55
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=96.99 E-value=0.00081 Score=76.11 Aligned_cols=73 Identities=16% Similarity=0.235 Sum_probs=59.7
Q ss_pred HHHHHhhcccccCCCCCCcccCccccCChhhHHHHHHhhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhh
Q 003099 769 LRALLSTLQYILGPDSGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSE 846 (848)
Q Consensus 769 IRaLLSTL~~VLWp~~gWkpVgmtdL~tpaqVKKAYRKAiLkvHPDKl~q~gas~EqK~IAe~VF~~LneAwe~F~de 846 (848)
||. |+-+-.=+| +-+.-||++.-.+..+||++||++..++||||++. ...+.+..-+.-+..++.||..|.|+
T Consensus 87 I~~-~k~~~~~~f--DPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~--mvn~~rse~Ee~y~~ItkAY~~lTd~ 159 (610)
T COG5407 87 IRT-LKIEYRRGF--DPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPP--MVNELRSEYEEKYKTITKAYGLLTDK 159 (610)
T ss_pred HHH-HHHHHHcCC--ChHHhhcccCCCcHHHHHHHHHhheeecChhhcCC--CChhHHHHHHHHHHHHHHHHHhhhhH
Confidence 444 333444455 44667899999999999999999999999999984 56778888899999999999999876
No 56
>PHA02624 large T antigen; Provisional
Probab=96.97 E-value=0.00056 Score=80.04 Aligned_cols=49 Identities=22% Similarity=0.293 Sum_probs=40.2
Q ss_pred cccCccccC--ChhhHHHHHHhhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhh
Q 003099 787 HPIPLTEVI--TSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSE 846 (848)
Q Consensus 787 kpVgmtdL~--tpaqVKKAYRKAiLkvHPDKl~q~gas~EqK~IAe~VF~~LneAwe~F~de 846 (848)
.-|||...+ +...||++||++++.+||||.. + ...|..|+.||++|++.
T Consensus 15 elLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgG----d-------eekfk~Ln~AYevL~d~ 65 (647)
T PHA02624 15 DLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGG----D-------EEKMKRLNSLYKKLQEG 65 (647)
T ss_pred HHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCC----c-------HHHHHHHHHHHHHHhcH
Confidence 445566666 8999999999999999999942 2 35799999999999874
No 57
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.0013 Score=74.11 Aligned_cols=95 Identities=24% Similarity=0.320 Sum_probs=70.4
Q ss_pred HHHHhHHhhHHHHhhhh----cCCCccHHHHHhhcccccC---CCCCCcccCccccCChhhHHHHHHhhhhhcCCCcccc
Q 003099 746 ERNRLAETLDADVKRWS----SGKEGNLRALLSTLQYILG---PDSGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQ 818 (848)
Q Consensus 746 ER~~l~d~Id~kI~~Wa----~GKe~NIRaLLSTL~~VLW---p~~gWkpVgmtdL~tpaqVKKAYRKAiLkvHPDKl~q 818 (848)
.=+.+.+.+..-|.... .-+.-+||.+|-..+.-|- .-.-++-||+..+++...||++|||..|.+|||++..
T Consensus 329 ~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~ag 408 (486)
T KOG0550|consen 329 NCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAG 408 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcc
Confidence 33444455554444443 1233568888777665552 1234678999999999999999999999999999874
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHhhhh
Q 003099 819 RGASIQQKYICEKVFDLLKEAWNKFNSE 846 (848)
Q Consensus 819 ~gas~EqK~IAe~VF~~LneAwe~F~de 846 (848)
+ ++-|+..|..+-+||.+++|-
T Consensus 409 ---s---q~eaE~kFkevgeAy~il~d~ 430 (486)
T KOG0550|consen 409 ---S---QKEAEAKFKEVGEAYTILSDP 430 (486)
T ss_pred ---h---hHHHHHHHHHHHHHHHHhcCH
Confidence 2 678999999999999999873
No 58
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.00099 Score=66.53 Aligned_cols=56 Identities=29% Similarity=0.466 Sum_probs=44.2
Q ss_pred CcccCccccCChhhHHHHHHhhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhhc
Q 003099 786 WHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSEE 847 (848)
Q Consensus 786 WkpVgmtdL~tpaqVKKAYRKAiLkvHPDKl~q~gas~EqK~IAe~VF~~LneAwe~F~deE 847 (848)
++-+++..-+++.+|++||+++++.+||||++. . +..|...|..+++||++|++..
T Consensus 6 ~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~-----~-~~~~~~~~~~~~ea~~~ls~~~ 61 (306)
T KOG0714|consen 6 YKILGIARSASEEDIKKAYRKLALKYHPDKNPS-----P-KEVAEAKFKEIAEAYEVLSDPK 61 (306)
T ss_pred HHHhCccccccHHHHHHHHHHHHHhhCCCCCCC-----c-hhhHHHHHhhhhccccccCCHH
Confidence 344566666677799999999999999999653 2 4456669999999999988753
No 59
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.66 E-value=0.0012 Score=72.69 Aligned_cols=38 Identities=29% Similarity=0.386 Sum_probs=32.9
Q ss_pred CCCCCCcccCccccCChhhHHHHHHhhhhhcCCCcccc
Q 003099 781 GPDSGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQ 818 (848)
Q Consensus 781 Wp~~gWkpVgmtdL~tpaqVKKAYRKAiLkvHPDKl~q 818 (848)
|+-.-+.-|+++..+|+..|||||||+++++||||++.
T Consensus 2 ~~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~ 39 (337)
T KOG0712|consen 2 KNTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD 39 (337)
T ss_pred cccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc
Confidence 33445667889999999999999999999999999985
No 60
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=96.64 E-value=0.22 Score=56.15 Aligned_cols=11 Identities=9% Similarity=0.105 Sum_probs=7.3
Q ss_pred hhhhhhhcccc
Q 003099 653 DRIFSEKFSAS 663 (848)
Q Consensus 653 ~~~~~~~f~~~ 663 (848)
...|.|+|++.
T Consensus 256 e~~~dd~~~gl 266 (387)
T PRK09510 256 AAEVDDLFGGL 266 (387)
T ss_pred HHHHHHHhhcc
Confidence 44678888654
No 61
>TIGR02794 tolA_full TolA protein. TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB.
Probab=96.42 E-value=0.31 Score=54.11 Aligned_cols=41 Identities=22% Similarity=0.156 Sum_probs=18.5
Q ss_pred HHhhcccccCCCCCCcccCccccCChhhHHHHHHhhhhhcCCC
Q 003099 772 LLSTLQYILGPDSGWHPIPLTEVITSAAVKKAYRKATLCVHPD 814 (848)
Q Consensus 772 LLSTL~~VLWp~~gWkpVgmtdL~tpaqVKKAYRKAiLkvHPD 814 (848)
+-+.|+-.|-|+ | ..++|....-+..+-.+-..||..+-|-
T Consensus 285 ~~v~V~I~L~pd-G-~V~~I~~sSGd~~lD~AAl~AV~ka~p~ 325 (346)
T TIGR02794 285 KTCRLRIRLAPD-G-TLLSVTKSSGDPALCQAALAAVAKAAKL 325 (346)
T ss_pred CEEEEEEEECCC-C-CEEeeccCCCCHHHHHHHHHHHHHhCCC
Confidence 344555444442 2 2223332223345556666666655544
No 62
>PRK14284 chaperone protein DnaJ; Provisional
Probab=96.37 E-value=0.0025 Score=70.56 Aligned_cols=34 Identities=29% Similarity=0.454 Sum_probs=31.2
Q ss_pred CCcccCccccCChhhHHHHHHhhhhhcCCCcccc
Q 003099 785 GWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQ 818 (848)
Q Consensus 785 gWkpVgmtdL~tpaqVKKAYRKAiLkvHPDKl~q 818 (848)
-|.-|+|..-+|+.+||+|||++++++|||+++.
T Consensus 3 ~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~ 36 (391)
T PRK14284 3 YYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPG 36 (391)
T ss_pred HHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC
Confidence 3677899999999999999999999999999874
No 63
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=96.13 E-value=0.011 Score=59.69 Aligned_cols=50 Identities=16% Similarity=0.282 Sum_probs=44.2
Q ss_pred cCChhhHHHHHHhhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhh
Q 003099 794 VITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNS 845 (848)
Q Consensus 794 L~tpaqVKKAYRKAiLkvHPDKl~q~gas~EqK~IAe~VF~~LneAwe~F~d 845 (848)
-+++..+++.|+.+...+|||+..+ .+...+.+|...=..||+||.+|++
T Consensus 15 ~iD~~~L~~~y~~Lq~~~HPD~f~~--~~~~eq~~a~~~ss~iN~AY~tLkd 64 (173)
T PRK01773 15 QLDNALLSERYLALQKSLHPDNFAN--SSAQEQRLAMQKSAEVNDALQILKD 64 (173)
T ss_pred CCCHHHHHHHHHHHHHHhCcCcccC--CCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 3889999999999999999999975 4566777888899999999999986
No 64
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=96.02 E-value=0.0058 Score=66.53 Aligned_cols=32 Identities=28% Similarity=0.481 Sum_probs=29.6
Q ss_pred CcccCccccCChhhHHHHHHhhhhhcCCCccc
Q 003099 786 WHPIPLTEVITSAAVKKAYRKATLCVHPDKLQ 817 (848)
Q Consensus 786 WkpVgmtdL~tpaqVKKAYRKAiLkvHPDKl~ 817 (848)
|.-|+|..-++..+||+|||++++.+|||+++
T Consensus 3 y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~ 34 (354)
T TIGR02349 3 YEILGVSKDASEEEIKKAYRKLAKKYHPDRNK 34 (354)
T ss_pred HHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCC
Confidence 56788999999999999999999999999986
No 65
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.89 E-value=0.0038 Score=66.88 Aligned_cols=55 Identities=20% Similarity=0.388 Sum_probs=47.8
Q ss_pred CCcccCccccCChhhHHHHHHhhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhhc
Q 003099 785 GWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSEE 847 (848)
Q Consensus 785 gWkpVgmtdL~tpaqVKKAYRKAiLkvHPDKl~q~gas~EqK~IAe~VF~~LneAwe~F~deE 847 (848)
-+.-||++.-.+..+|.+|||++++.+|||+++.. + +...|..|..||+++.|.+
T Consensus 35 CYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~----e----~k~~F~~iAtayeilkd~e 89 (329)
T KOG0722|consen 35 CYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDP----E----SKKLFVKIATAYEILKDNE 89 (329)
T ss_pred HHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCc----h----hhhhhhhhhcccccccchh
Confidence 46678999999999999999999999999999742 2 3489999999999998865
No 66
>PRK14292 chaperone protein DnaJ; Provisional
Probab=95.77 E-value=0.0078 Score=66.08 Aligned_cols=33 Identities=27% Similarity=0.487 Sum_probs=30.4
Q ss_pred CCcccCccccCChhhHHHHHHhhhhhcCCCccc
Q 003099 785 GWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQ 817 (848)
Q Consensus 785 gWkpVgmtdL~tpaqVKKAYRKAiLkvHPDKl~ 817 (848)
-|.-|+|...+|+.+||+|||++++.+|||+++
T Consensus 4 ~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~ 36 (371)
T PRK14292 4 YYELLGVSRTASADEIKSAYRKLALKYHPDRNK 36 (371)
T ss_pred hHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCC
Confidence 467789999999999999999999999999986
No 67
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=95.70 E-value=0.01 Score=66.22 Aligned_cols=61 Identities=25% Similarity=0.291 Sum_probs=55.8
Q ss_pred CCCCcccCccccCChhhHHHHHHhhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhhc
Q 003099 783 DSGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSEE 847 (848)
Q Consensus 783 ~~gWkpVgmtdL~tpaqVKKAYRKAiLkvHPDKl~q~gas~EqK~IAe~VF~~LneAwe~F~deE 847 (848)
-+.|+-||+-.-++--.|-|||||++.++|||--+ +.+.+-.|++.|.-|.-|-++|+|+|
T Consensus 394 RDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFq----dEeEKKkAEKKFIDIAAAKEVLsd~E 454 (504)
T KOG0624|consen 394 RDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQ----DEEEKKKAEKKFIDIAAAKEVLSDPE 454 (504)
T ss_pred chHHHHhhhcccccHHHHHHHHHHHHHhcCCcccc----CHHHHHHHHHhhhhHHHHHHhhcCHH
Confidence 46789999999999999999999999999999986 35678899999999999999999987
No 68
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=95.57 E-value=0.015 Score=71.26 Aligned_cols=39 Identities=26% Similarity=0.489 Sum_probs=35.2
Q ss_pred hhhHHHHHHhhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhh
Q 003099 797 SAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNS 845 (848)
Q Consensus 797 paqVKKAYRKAiLkvHPDKl~q~gas~EqK~IAe~VF~~LneAwe~F~d 845 (848)
|..|+++|+|++.++||||+|- ....|..+|.||+.|+.
T Consensus 1299 ~~KirrqY~kLA~kYHPDKNPE----------GRemFe~VnKAYE~L~~ 1337 (2235)
T KOG1789|consen 1299 PAKIRRQYYKLAAKYHPDKNPE----------GREMFERVNKAYELLSS 1337 (2235)
T ss_pred HHHHHHHHHHHHHHhCCCCCch----------HHHHHHHHHHHHHHHHH
Confidence 5899999999999999999983 36899999999999874
No 69
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=93.67 E-value=0.11 Score=49.80 Aligned_cols=46 Identities=28% Similarity=0.446 Sum_probs=38.6
Q ss_pred cCccccCChhhHHHHHHhhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhh
Q 003099 789 IPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNS 845 (848)
Q Consensus 789 VgmtdL~tpaqVKKAYRKAiLkvHPDKl~q~gas~EqK~IAe~VF~~LneAwe~F~d 845 (848)
|+++..++...||.++|++.+.-|||+.. |+ |+|.+ ||+|++.|..
T Consensus 62 L~v~~s~~k~KikeaHrriM~~NHPD~GG----SP---YlAsK----INEAKdlLe~ 107 (112)
T KOG0723|consen 62 LGVTPSLDKDKIKEAHRRIMLANHPDRGG----SP---YLASK----INEAKDLLEG 107 (112)
T ss_pred hCCCccccHHHHHHHHHHHHHcCCCcCCC----CH---HHHHH----HHHHHHHHhc
Confidence 67888999999999999999999999964 43 67764 6999988753
No 70
>TIGR02794 tolA_full TolA protein. TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB.
Probab=93.32 E-value=6.6 Score=43.92 Aligned_cols=17 Identities=29% Similarity=0.489 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003099 519 ERVKRQRELEIERLRRI 535 (848)
Q Consensus 519 e~~ererE~eKe~~r~~ 535 (848)
+.+...+..+..+++++
T Consensus 78 ~~~~~~~~~eq~r~~~l 94 (346)
T TIGR02794 78 EEAEKQRAAEQARQKEL 94 (346)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444455445554444
No 71
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=92.99 E-value=0.1 Score=56.81 Aligned_cols=47 Identities=26% Similarity=0.441 Sum_probs=39.5
Q ss_pred CChhhHHHHHHhhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhh
Q 003099 795 ITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSE 846 (848)
Q Consensus 795 ~tpaqVKKAYRKAiLkvHPDKl~q~gas~EqK~IAe~VF~~LneAwe~F~de 846 (848)
.+|.+|.++.++-++.+||||... |++. -|...|..|+.||++|.|-
T Consensus 58 a~~~qi~kah~kkv~kyHPDk~aa-~g~~----~~d~fFk~iqkA~evL~D~ 104 (379)
T COG5269 58 AIPPQILKAHKKKVYKYHPDKTAA-GGNK----GCDEFFKLIQKAREVLGDR 104 (379)
T ss_pred CCcHHHHHHHHHHHHHhCccchhc-cCCC----CcHHHHHHHHHHHHHhccH
Confidence 357899999999999999999854 4443 3789999999999999874
No 72
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=92.98 E-value=0.12 Score=62.42 Aligned_cols=34 Identities=24% Similarity=0.364 Sum_probs=30.4
Q ss_pred CCcccCccccCChhhHHHHHHhhhhhcCCCcccc
Q 003099 785 GWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQ 818 (848)
Q Consensus 785 gWkpVgmtdL~tpaqVKKAYRKAiLkvHPDKl~q 818 (848)
.|.-|||...++..+||++||++++.+|||++..
T Consensus 4 YYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~ 37 (871)
T TIGR03835 4 YYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKA 37 (871)
T ss_pred hhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC
Confidence 3567889999999999999999999999999863
No 73
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=92.64 E-value=17 Score=40.99 Aligned_cols=13 Identities=46% Similarity=0.710 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHH
Q 003099 521 VKRQRELEIERLR 533 (848)
Q Consensus 521 ~ererE~eKe~~r 533 (848)
-+|-+.++++++.
T Consensus 100 qErlkQle~er~~ 112 (387)
T COG3064 100 QERLKQLEKERLK 112 (387)
T ss_pred HHHHHHHHHHHHH
Confidence 3455555555553
No 74
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=87.83 E-value=0.58 Score=46.85 Aligned_cols=60 Identities=23% Similarity=0.317 Sum_probs=52.3
Q ss_pred CCCcccCccccCChhhHHHHHHhhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHh
Q 003099 784 SGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKF 843 (848)
Q Consensus 784 ~gWkpVgmtdL~tpaqVKKAYRKAiLkvHPDKl~q~gas~EqK~IAe~VF~~LneAwe~F 843 (848)
....-+++..-.+...|+++|++++-..|||+....+..++--.++...+..|+.||..+
T Consensus 114 ~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 114 DALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred hHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 345666777777889999999999999999999998888888889999999999999754
No 75
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=77.68 E-value=1.9e+02 Score=35.89 Aligned_cols=30 Identities=17% Similarity=0.231 Sum_probs=23.1
Q ss_pred HHHHHHhHHhhHHHHhhhhcCCCccHHHHH
Q 003099 744 QAERNRLAETLDADVKRWSSGKEGNLRALL 773 (848)
Q Consensus 744 qaER~~l~d~Id~kI~~Wa~GKe~NIRaLL 773 (848)
|-.++.+.+.|-..+-.|..|..+-|-.|+
T Consensus 646 qpve~~~d~alm~ql~pl~hgn~ns~~~ii 675 (811)
T KOG4364|consen 646 QPVEQICDRALMVQLFPLSHGNENSINDII 675 (811)
T ss_pred cchHHHHHHHHHHHHhhhhcccccchHHHH
Confidence 446778888888999999988877665554
No 76
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=62.09 E-value=1.2e+02 Score=38.03 Aligned_cols=13 Identities=31% Similarity=0.427 Sum_probs=7.8
Q ss_pred chhhhhhHHHHHH
Q 003099 511 LTSKDKDAERVKR 523 (848)
Q Consensus 511 ~~~e~~~~e~~er 523 (848)
.+-|+|.++..+|
T Consensus 312 ~TFEDKrkeNy~k 324 (1118)
T KOG1029|consen 312 VTFEDKRKENYEK 324 (1118)
T ss_pred cchhhhhHHhHhh
Confidence 3457777765554
No 77
>PF08628 Nexin_C: Sorting nexin C terminal; InterPro: IPR013937 This region is found at the C terminus of proteins belonging to the nexin family. It is found on proteins which also contain IPR001683 from INTERPRO.
Probab=60.44 E-value=11 Score=34.94 Aligned_cols=72 Identities=19% Similarity=0.262 Sum_probs=47.5
Q ss_pred CCccHHHHHhhcccccCCCCCCcccCccccCChhhHHH---HHHhhhhhcCCCccccCCCChhHHHHHHHHHHHHHH
Q 003099 765 KEGNLRALLSTLQYILGPDSGWHPIPLTEVITSAAVKK---AYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKE 838 (848)
Q Consensus 765 Ke~NIRaLLSTL~~VLWp~~gWkpVgmtdL~tpaqVKK---AYRKAiLkvHPDKl~q~gas~EqK~IAe~VF~~Lne 838 (848)
.+.++=.+|..|+..|||+..|.+.+. --|+.+-.. .=+..++..=||-+..-=+..-...-+..||..|+.
T Consensus 36 se~~v~~~i~~l~~~lwP~g~~~~~~~--~Rt~~ek~~tr~~A~~~L~~~~P~~l~~vvG~~~~~~g~~~if~~LQ~ 110 (113)
T PF08628_consen 36 SEEQVARYIQLLRESLWPNGKLAEPPP--PRTEEEKLRTRQEARELLLSLLPDTLKKVVGSENSRRGARRIFEMLQN 110 (113)
T ss_pred CHHHHHHHHHHHHHhhCCCCCCCCCCC--CCCHHHHHHHHHHHHHHHHHhcHHHHHHccCHHHHHHHHHHHHHHHCC
Confidence 455788899999999999887776555 223332222 222344677799887533344467778888988864
No 78
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=57.21 E-value=3.8e+02 Score=31.48 Aligned_cols=8 Identities=25% Similarity=0.235 Sum_probs=3.3
Q ss_pred HHHhhhhh
Q 003099 195 ETRKSLGQ 202 (848)
Q Consensus 195 ~~qk~l~q 202 (848)
+|-..++|
T Consensus 111 rinasfrQ 118 (442)
T PF06637_consen 111 RINASFRQ 118 (442)
T ss_pred HHHHHHHH
Confidence 33344444
No 79
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=53.56 E-value=25 Score=33.84 Aligned_cols=47 Identities=26% Similarity=0.427 Sum_probs=38.2
Q ss_pred CChhhHHHHHHhhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhh
Q 003099 795 ITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFN 844 (848)
Q Consensus 795 ~tpaqVKKAYRKAiLkvHPDKl~q~gas~EqK~IAe~VF~~LneAwe~F~ 844 (848)
++..+++.+.|+-.+.||||-..+ .++++.+=+.-+..||.-.+.+.
T Consensus 6 ~~~~~l~~aLr~Fy~~VHPDlF~~---~P~~k~~Ne~SLk~Ln~~Ld~l~ 52 (112)
T PF14687_consen 6 LSSPDLRSALRPFYFAVHPDLFGQ---HPEEKQVNEESLKLLNSYLDSLK 52 (112)
T ss_pred hhhHHHHHHHHHHHHHhCCccccc---ChHHHHhhHHHHHHHHHHHHHHh
Confidence 456789999999999999999874 46677788888888887766654
No 80
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=50.49 E-value=24 Score=38.44 Aligned_cols=65 Identities=23% Similarity=0.301 Sum_probs=47.8
Q ss_pred ccHHHHHhhccc---ccCCCCCCcccCccccCChhhHHHHHHhhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHH
Q 003099 767 GNLRALLSTLQY---ILGPDSGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWN 841 (848)
Q Consensus 767 ~NIRaLLSTL~~---VLWp~~gWkpVgmtdL~tpaqVKKAYRKAiLkvHPDKl~q~gas~EqK~IAe~VF~~LneAwe 841 (848)
|=||.-|-+||. ++- --+.-||+.+.++.+.|.-+|.+++-.||||-... .++ ..-|..+-+||-
T Consensus 30 giirnrll~~~kske~~~--e~fril~v~e~~~adevr~af~~lakq~hpdsgs~-~ad-------aa~f~qideafr 97 (342)
T KOG0568|consen 30 GIIRNRLLHLHKSKEKIM--ECFRILGVEEGADADEVREAFHDLAKQVHPDSGSE-EAD-------AARFIQIDEAFR 97 (342)
T ss_pred hhHHHHHHHHhhhHHHHH--HHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCc-ccc-------HHHHHHHHHHHH
Confidence 346666666664 111 13567899999999999999999999999998753 222 356888888887
No 81
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=49.46 E-value=1.4e+02 Score=37.64 Aligned_cols=8 Identities=38% Similarity=0.551 Sum_probs=3.9
Q ss_pred CccHHHHH
Q 003099 766 EGNLRALL 773 (848)
Q Consensus 766 e~NIRaLL 773 (848)
..|||.-+
T Consensus 470 ~~~lRSPI 477 (1064)
T KOG1144|consen 470 TENLRSPI 477 (1064)
T ss_pred chhcCCce
Confidence 34566543
No 82
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=47.21 E-value=4.6e+02 Score=31.46 Aligned_cols=12 Identities=8% Similarity=-0.313 Sum_probs=8.3
Q ss_pred cccccCccccch
Q 003099 367 FGLAHGNLKQEE 378 (848)
Q Consensus 367 ~~~~~g~~~~~~ 378 (848)
.-++.|||.|.+
T Consensus 108 ~fit~YNAv~R~ 119 (489)
T PF05262_consen 108 TFITIYNAVYRG 119 (489)
T ss_pred HHHHHHHHHHcC
Confidence 345677778877
No 83
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=46.71 E-value=6.3e+02 Score=32.37 Aligned_cols=13 Identities=15% Similarity=0.115 Sum_probs=5.6
Q ss_pred cCChhhHHHHHHh
Q 003099 794 VITSAAVKKAYRK 806 (848)
Q Consensus 794 L~tpaqVKKAYRK 806 (848)
+-++..|++--..
T Consensus 647 ~~~~eavq~~d~~ 659 (1118)
T KOG1029|consen 647 FKKTEAVQRFDAD 659 (1118)
T ss_pred cccHHHHhhhccc
Confidence 3344445444333
No 84
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=40.53 E-value=7.3e+02 Score=29.87 Aligned_cols=8 Identities=13% Similarity=-0.151 Sum_probs=3.1
Q ss_pred CCCCCCcc
Q 003099 686 YPYSSGYV 693 (848)
Q Consensus 686 ~~~s~i~g 693 (848)
+|+..|.|
T Consensus 391 S~~~~Ir~ 398 (489)
T PF05262_consen 391 SPVNGIRG 398 (489)
T ss_pred cccceecc
Confidence 33333433
No 85
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=38.34 E-value=2.2e+02 Score=29.24 Aligned_cols=23 Identities=9% Similarity=0.177 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHhhcchhh
Q 003099 626 RATVEARERAAEKAMAERGAFDA 648 (848)
Q Consensus 626 rA~aEAR~rA~ekA~~eraaaea 648 (848)
+..+++|.++...+..++++.++
T Consensus 80 ~I~~e~~~~~~a~~~~~~~~~ea 102 (155)
T PRK06569 80 RLKKEKIDSLESEFLIKKKNLEQ 102 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555555555444444444
No 86
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=38.32 E-value=6.5e+02 Score=32.27 Aligned_cols=15 Identities=27% Similarity=0.432 Sum_probs=11.1
Q ss_pred HHhhhhhcCCCcccc
Q 003099 804 YRKATLCVHPDKLQQ 818 (848)
Q Consensus 804 YRKAiLkvHPDKl~q 818 (848)
|-..-+.+||||-|+
T Consensus 1180 ~I~RQm~l~~~kpP~ 1194 (1259)
T KOG0163|consen 1180 WIARQMELHPDKPPI 1194 (1259)
T ss_pred HHHhhheecCCCCCe
Confidence 445567899999875
No 87
>PF11600 CAF-1_p150: Chromatin assembly factor 1 complex p150 subunit, N-terminal; InterPro: IPR021644 P150 is a polypeptide subunit of CAF-1, which functions in depositing newly synthesised and acetylated histones H3/H4 into chromatin during DNA replication and repair [].P150 is the HP1 interaction site of CAF-1 and lies within the N-terminal region of the protein [].
Probab=34.36 E-value=5.7e+02 Score=26.84 Aligned_cols=6 Identities=17% Similarity=0.362 Sum_probs=2.9
Q ss_pred hhhhcc
Q 003099 656 FSEKFS 661 (848)
Q Consensus 656 ~~~~f~ 661 (848)
+..||.
T Consensus 182 ~~~FF~ 187 (216)
T PF11600_consen 182 ITSFFK 187 (216)
T ss_pred HHHHhC
Confidence 344554
No 88
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=32.95 E-value=55 Score=33.02 Aligned_cols=46 Identities=22% Similarity=0.317 Sum_probs=37.0
Q ss_pred hhHHHHHHhhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhh
Q 003099 798 AAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNS 845 (848)
Q Consensus 798 aqVKKAYRKAiLkvHPDKl~q~gas~EqK~IAe~VF~~LneAwe~F~d 845 (848)
...+..|+.+...+|||.... ++......+-..|..+|.||.+|.+
T Consensus 18 ~~l~~~~~~~~~~~~~dr~~~--~~~~~~~~~l~~~~~~~~a~~tLk~ 63 (174)
T COG1076 18 DALKLQYRELQRAYHPDRFGK--ASEAEQRKALQQSAEVNPAYQTLKD 63 (174)
T ss_pred hHhhhhHHHHHHhhCcccccc--cchHHHHHHHHHHHHhcchHHHHHH
Confidence 467889999999999999874 3444555567789999999999875
No 89
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=31.28 E-value=5.4e+02 Score=32.93 Aligned_cols=15 Identities=33% Similarity=0.220 Sum_probs=9.6
Q ss_pred HhhHHHHhHHHHHHH
Q 003099 114 EANEREENMRKVKEA 128 (848)
Q Consensus 114 e~~eQ~en~r~lKEa 128 (848)
|-++++=|.+-||+-
T Consensus 479 EKLQ~FFNerILkeE 493 (1259)
T KOG0163|consen 479 EKLQKFFNERILKEE 493 (1259)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555666677777653
No 90
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=28.53 E-value=2e+02 Score=34.93 Aligned_cols=17 Identities=12% Similarity=0.225 Sum_probs=10.3
Q ss_pred HhhcccccCCCCCCccc
Q 003099 773 LSTLQYILGPDSGWHPI 789 (848)
Q Consensus 773 LSTL~~VLWp~~gWkpV 789 (848)
+-+|+|=+|....|..-
T Consensus 451 ~k~mGyk~~d~nk~Eqn 467 (591)
T KOG2412|consen 451 QKMMGYKAWDSNKWEQN 467 (591)
T ss_pred HHhhccccccccccccc
Confidence 44566777765566653
No 91
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=27.20 E-value=8.6e+02 Score=30.26 Aligned_cols=9 Identities=22% Similarity=0.590 Sum_probs=4.8
Q ss_pred CCCCcHHHh
Q 003099 704 IEGESAQRC 712 (848)
Q Consensus 704 ~~ge~~~R~ 712 (848)
|+|-+++|.
T Consensus 795 ~hGGp~erH 803 (940)
T KOG4661|consen 795 VHGGPSERH 803 (940)
T ss_pred cCCCchhhc
Confidence 456666443
No 92
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=25.64 E-value=1.1e+02 Score=31.87 Aligned_cols=52 Identities=17% Similarity=0.208 Sum_probs=35.4
Q ss_pred cccCChhhHHHHHHhhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhh
Q 003099 792 TEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNS 845 (848)
Q Consensus 792 tdL~tpaqVKKAYRKAiLkvHPDKl~q~gas~EqK~IAe~VF~~LneAwe~F~d 845 (848)
..-+.|..++.-|----..+|||+...... -+.-.|..--..||+||++|.+
T Consensus 19 ~~~~~p~~l~~~~~~~skkL~~d~~~~~~~--~~~d~a~eqSa~lnkAY~TLk~ 70 (168)
T KOG3192|consen 19 SFKIDPDKLKEKYTDISKKLHPDRPGLSFA--GDTDQASEQSAELNKAYDTLKD 70 (168)
T ss_pred CCCCCcchhhHHHHHHHHhhCccccccccc--ccchhHHHHHHHHHHHHHHHHh
Confidence 344556666666777777889998653221 1122677778899999999976
No 93
>PRK12472 hypothetical protein; Provisional
Probab=24.68 E-value=7.4e+02 Score=30.01 Aligned_cols=69 Identities=32% Similarity=0.322 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhh
Q 003099 580 TAEFRQRALAEARERLEKACAEAKEKSLAEKTSMEARLRAERAAVERATVEARERAAEKAMAERGAFDARERVD 653 (848)
Q Consensus 580 ~aEARera~aEAreraEkaa~ea~ek~a~era~~EAr~kAEraAvErA~aEAR~rA~ekA~~eraaaeare~~~ 653 (848)
+-+|+.+|+ +++.+++..++++..+....++.+++++.+--++.+.+.+- ++.++.+.+++-+++-+++
T Consensus 253 ~d~~~~~a~-~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~a~~~a----~~~~~~~~~~a~~a~l~~~ 321 (508)
T PRK12472 253 TDEAKARAE-ERQQKAAQQAAEAATQLDTAKADAEAKRAAAAATKEAAKAA----AAKKAETAKAATDAKLALE 321 (508)
T ss_pred cchhhhhHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH----HHhhhHHHHHHHHHHhhcC
Confidence 444555554 36666666777776666666666666665544444443322 2233334455555555543
No 94
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=24.04 E-value=9.3e+02 Score=26.00 Aligned_cols=23 Identities=22% Similarity=0.195 Sum_probs=9.0
Q ss_pred HhHHhhHHHHhhhhcCCCccHHH
Q 003099 749 RLAETLDADVKRWSSGKEGNLRA 771 (848)
Q Consensus 749 ~l~d~Id~kI~~Wa~GKe~NIRa 771 (848)
.-.|.|+..=..--..|+.-||.
T Consensus 208 T~~D~~h~en~~~g~~ky~tl~~ 230 (246)
T PF00769_consen 208 TQLDIIHAENVRAGRDKYKTLRQ 230 (246)
T ss_dssp -HHHHHHHHHHHTT--HHHHHHH
T ss_pred chhHHHHHHHHHhchhHHHHHHH
Confidence 33455554432222335555543
No 95
>PRK12472 hypothetical protein; Provisional
Probab=23.86 E-value=1.4e+03 Score=27.89 Aligned_cols=13 Identities=23% Similarity=0.189 Sum_probs=6.1
Q ss_pred CCCccHHHHHhhc
Q 003099 764 GKEGNLRALLSTL 776 (848)
Q Consensus 764 GKe~NIRaLLSTL 776 (848)
|+...+=+|||+-
T Consensus 435 ~~~tefv~~~~~~ 447 (508)
T PRK12472 435 NYRTEFVAVLSDQ 447 (508)
T ss_pred CCcceEEEEecCC
Confidence 3444444455544
No 96
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=23.61 E-value=7.7e+02 Score=27.79 Aligned_cols=11 Identities=73% Similarity=0.803 Sum_probs=6.6
Q ss_pred HHHHHHHHHHH
Q 003099 613 MEARLRAERAA 623 (848)
Q Consensus 613 ~EAr~kAEraA 623 (848)
||||+.|-|+|
T Consensus 1 AEarlaakR~a 11 (302)
T PF09738_consen 1 AEARLAAKRAA 11 (302)
T ss_pred ChhhHHHHHHh
Confidence 36666666655
No 97
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=21.89 E-value=1.5e+03 Score=28.31 Aligned_cols=8 Identities=13% Similarity=0.393 Sum_probs=4.0
Q ss_pred hhhccccc
Q 003099 657 SEKFSASS 664 (848)
Q Consensus 657 ~~~f~~~~ 664 (848)
.+.|++.|
T Consensus 740 ~drY~sdf 747 (940)
T KOG4661|consen 740 LDRYSSDF 747 (940)
T ss_pred hhhhhccc
Confidence 44555544
No 98
>PF11600 CAF-1_p150: Chromatin assembly factor 1 complex p150 subunit, N-terminal; InterPro: IPR021644 P150 is a polypeptide subunit of CAF-1, which functions in depositing newly synthesised and acetylated histones H3/H4 into chromatin during DNA replication and repair [].P150 is the HP1 interaction site of CAF-1 and lies within the N-terminal region of the protein [].
Probab=21.32 E-value=9.7e+02 Score=25.17 Aligned_cols=7 Identities=0% Similarity=0.036 Sum_probs=2.9
Q ss_pred hhccccc
Q 003099 658 EKFSASS 664 (848)
Q Consensus 658 ~~f~~~~ 664 (848)
..|++-|
T Consensus 180 ~~~~~FF 186 (216)
T PF11600_consen 180 ARITSFF 186 (216)
T ss_pred HHHHHHh
Confidence 3444333
No 99
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=20.40 E-value=1.2e+02 Score=30.16 Aligned_cols=39 Identities=26% Similarity=0.408 Sum_probs=27.6
Q ss_pred cCccccCChhhHHHHHHhhhhhcCCCccccCCCChhHHHHHHHHHH
Q 003099 789 IPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFD 834 (848)
Q Consensus 789 VgmtdL~tpaqVKKAYRKAiLkvHPDKl~q~gas~EqK~IAe~VF~ 834 (848)
|+|.+.+++..|.+.|.+++-.-+|+|.. | -||-.+||.
T Consensus 64 Lnv~~~~~~eeI~k~y~~Lf~~Nd~~kGG----S---fYLQSKV~r 102 (127)
T PF03656_consen 64 LNVKEELSREEIQKRYKHLFKANDPSKGG----S---FYLQSKVFR 102 (127)
T ss_dssp HT--G--SHHHHHHHHHHHHHHT-CCCTS--------HHHHHHHHH
T ss_pred cCCCCccCHHHHHHHHHHHHhccCCCcCC----C---HHHHHHHHH
Confidence 45556788999999999999999999853 3 488888875
Done!