BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003100
(848 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SQW|A Chain A, Structure Of Mss116p (Nte Deletion) Bound To Ssrna And
Amp-Pnp
Length = 579
Score = 181 bits (459), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 119/350 (34%), Positives = 192/350 (54%), Gaps = 24/350 (6%)
Query: 392 KALTAAGYIQMTRVQEATLSACL--EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSST 449
KA+T + +T VQ+ T+ L E D + +AKTGTGK+ AFL+P + ++ S
Sbjct: 34 KAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQ 93
Query: 450 TQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGI---GVLTLVGGTRFKVDQRRLESD 506
+ +I+ PTR+LA QI AE + + G+ ++LVGGT F+ ++
Sbjct: 94 YM----VKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKL 149
Query: 507 PCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRR 566
I++ATPGRL+D +E S R + K VLDEAD LL++GFR D+E I L +
Sbjct: 150 RPNIVIATPGRLIDVLEKYSNKFFRFVDYK--VLDEADRLLEIGFRDDLETISGILNEKN 207
Query: 567 -------QSLLFSATMPKEVRRISQLVL-KREHTYIDTVGLGSVETPVKIKQSCLVAPHE 618
++LLFSAT+ +V++++ ++ K+E ++DTV E +I QS +++
Sbjct: 208 SKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKF 267
Query: 619 LH--FQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLR-EMKMN--VREMYSRKPQ 673
+ F + H+ K+ +YK I+F T TS L +L+ E K + + E + + Q
Sbjct: 268 ANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQ 327
Query: 674 LYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIH 723
R + + F+ + ILV +DV ARGMD+P+V V+Q+G+P + YIH
Sbjct: 328 NKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIH 377
>pdb|3I5X|A Chain A, Structure Of Mss116p Bound To Ssrna And Amp-Pnp
pdb|3I5Y|A Chain A, Structure Of Mss116p Bound To Ssrna Containing A Single
5-Bru And Amp- Pnp
pdb|3I61|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-beryllium
Fluoride
pdb|3I62|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-aluminum
Fluoride
Length = 563
Score = 179 bits (454), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 119/350 (34%), Positives = 192/350 (54%), Gaps = 24/350 (6%)
Query: 392 KALTAAGYIQMTRVQEATLSACL--EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSST 449
KA+T + +T VQ+ T+ L E D + +AKTGTGK+ AFL+P + ++ S
Sbjct: 85 KAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQ 144
Query: 450 TQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGI---GVLTLVGGTRFKVDQRRLESD 506
+ +I+ PTR+LA QI AE + + G+ ++LVGGT F+ ++
Sbjct: 145 YM----VKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKL 200
Query: 507 PCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRR 566
I++ATPGRL+D +E S R + K VLDEAD LL++GFR D+E I L +
Sbjct: 201 RPNIVIATPGRLIDVLEKYSNKFFRFVDYK--VLDEADRLLEIGFRDDLETISGILNEKN 258
Query: 567 -------QSLLFSATMPKEVRRISQLVL-KREHTYIDTVGLGSVETPVKIKQSCLVAPHE 618
++LLFSAT+ +V++++ ++ K+E ++DTV E +I QS +++
Sbjct: 259 SKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKF 318
Query: 619 LH--FQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLR-EMKMN--VREMYSRKPQ 673
+ F + H+ K+ +YK I+F T TS L +L+ E K + + E + + Q
Sbjct: 319 ANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQ 378
Query: 674 LYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIH 723
R + + F+ + ILV +DV ARGMD+P+V V+Q+G+P + YIH
Sbjct: 379 NKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIH 428
>pdb|3SQX|A Chain A, Structure Of Mss116p (Nte And C-Tail Double Deletion)
Bound To Ssrna And Amp-Pnp
Length = 512
Score = 177 bits (450), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 119/350 (34%), Positives = 192/350 (54%), Gaps = 24/350 (6%)
Query: 392 KALTAAGYIQMTRVQEATLSACL--EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSST 449
KA+T + +T VQ+ T+ L E D + +AKTGTGK+ AFL+P + ++ S
Sbjct: 34 KAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQ 93
Query: 450 TQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGI---GVLTLVGGTRFKVDQRRLESD 506
+ +I+ PTR+LA QI AE + + G+ ++LVGGT F+ ++
Sbjct: 94 YM----VKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKL 149
Query: 507 PCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRR 566
I++ATPGRL+D +E S R + K VLDEAD LL++GFR D+E I L +
Sbjct: 150 RPNIVIATPGRLIDVLEKYSNKFFRFVDYK--VLDEADRLLEIGFRDDLETISGILNEKN 207
Query: 567 -------QSLLFSATMPKEVRRISQLVL-KREHTYIDTVGLGSVETPVKIKQSCLVAPHE 618
++LLFSAT+ +V++++ ++ K+E ++DTV E +I QS +++
Sbjct: 208 SKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKF 267
Query: 619 LH--FQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLR-EMKMN--VREMYSRKPQ 673
+ F + H+ K+ +YK I+F T TS L +L+ E K + + E + + Q
Sbjct: 268 ANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQ 327
Query: 674 LYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIH 723
R + + F+ + ILV +DV ARGMD+P+V V+Q+G+P + YIH
Sbjct: 328 NKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIH 377
>pdb|2VSO|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSO|B Chain B, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|B Chain B, Crystal Structure Of A Translation Initiation Complex
Length = 395
Score = 152 bits (384), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 111/353 (31%), Positives = 181/353 (51%), Gaps = 38/353 (10%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+FD+ + ++ + G+ + + +Q+ + +EG D + +A++GTGK+ F + A++
Sbjct: 23 KFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQ 82
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+ TS Q L+L PTRELA QI +AL + D I V +GGT F D
Sbjct: 83 RI--DTSVKAPQ------ALMLAPTRELALQIQKVVMALAFHMD-IKVHACIGGTSFVED 133
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
L QI+V TPGR+ D+I+ + R +KM +LDEAD +L GF++ + I
Sbjct: 134 AEGLRD--AQIVVGTPGRVFDNIQRRR---FRTDKIKMFILDEADEMLSSGFKEQIYQIF 188
Query: 560 DCLPRRRQSLLFSATMPKEVRRIS--------QLVLKREHTYIDTVGLGSVETPVKIKQS 611
LP Q +L SATMP +V ++ ++++K++ ++ IKQ
Sbjct: 189 TLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLE-----------GIKQF 237
Query: 612 CL-VAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSR 670
+ V E ++ L L + I T + ++FC+T L LR K V +YS
Sbjct: 238 YVNVEEEEYKYECLTDLY-DSISVT---QAVIFCNTRRKVEELTTKLRNDKFTVSAIYSD 293
Query: 671 KPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIH 723
PQ RD I +EFR+ IL+++D+ ARG+D V+ V+ +P ++E YIH
Sbjct: 294 LPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIH 346
>pdb|2J0Q|A Chain A, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0Q|B Chain B, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0S|A Chain A, The Crystal Structure Of The Exon Junction Complex At 2.2
A Resolution
Length = 410
Score = 151 bits (381), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 103/352 (29%), Positives = 179/352 (50%), Gaps = 37/352 (10%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
FD G+ ++ + A G+ + + +Q+ + ++G+D + ++++GTGK+ F + ++
Sbjct: 39 FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQC 98
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ TQ LIL PTRELA QI +AL ++ + +GGT D
Sbjct: 99 L--DIQVRETQ------ALILAPTRELAVQIQKGLLAL-GDYMNVQCHACIGGTNVGEDI 149
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
R+L+ ++ TPGR+ D I +S +R +KMLVLDEAD +L+ GF++ + ++
Sbjct: 150 RKLDYGQ-HVVAGTPGRVFDMIRRRS---LRTRAIKMLVLDEADEMLNKGFKEQIYDVYR 205
Query: 561 CLPRRRQSLLFSATMPKEVRRIS--------QLVLKREHTYIDTVGLGSVETPVKIKQSC 612
LP Q +L SAT+P E+ ++ ++++KR+ ++ IKQ
Sbjct: 206 YLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLE-----------GIKQFF 254
Query: 613 L-VAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRK 671
+ V E F L L + + ++FC+T L +RE V M+
Sbjct: 255 VAVEREEWKFDTLCDLYDTLTIT----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDM 310
Query: 672 PQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIH 723
PQ R+ I +EFR+ +L+++DV ARG+D P V+ ++ +P +RE YIH
Sbjct: 311 PQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIH 362
>pdb|2XB2|A Chain A, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
pdb|2XB2|X Chain X, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
Length = 411
Score = 151 bits (381), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 103/352 (29%), Positives = 179/352 (50%), Gaps = 37/352 (10%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
FD G+ ++ + A G+ + + +Q+ + ++G+D + ++++GTGK+ F + ++
Sbjct: 40 FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQC 99
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ TQ LIL PTRELA QI +AL ++ + +GGT D
Sbjct: 100 L--DIQVRETQ------ALILAPTRELAVQIQKGLLAL-GDYMNVQCHACIGGTNVGEDI 150
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
R+L+ ++ TPGR+ D I +S +R +KMLVLDEAD +L+ GF++ + ++
Sbjct: 151 RKLDYGQ-HVVAGTPGRVFDMIRRRS---LRTRAIKMLVLDEADEMLNKGFKEQIYDVYR 206
Query: 561 CLPRRRQSLLFSATMPKEVRRIS--------QLVLKREHTYIDTVGLGSVETPVKIKQSC 612
LP Q +L SAT+P E+ ++ ++++KR+ ++ IKQ
Sbjct: 207 YLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLE-----------GIKQFF 255
Query: 613 L-VAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRK 671
+ V E F L L + + ++FC+T L +RE V M+
Sbjct: 256 VAVEREEWKFDTLCDLYDTLTIT----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDM 311
Query: 672 PQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIH 723
PQ R+ I +EFR+ +L+++DV ARG+D P V+ ++ +P +RE YIH
Sbjct: 312 PQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIH 363
>pdb|2HYI|C Chain C, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|2HYI|I Chain I, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|3EX7|C Chain C, The Crystal Structure Of Ejc In Its Transition State
pdb|3EX7|H Chain H, The Crystal Structure Of Ejc In Its Transition State
Length = 413
Score = 150 bits (380), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 103/352 (29%), Positives = 179/352 (50%), Gaps = 37/352 (10%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
FD G+ ++ + A G+ + + +Q+ + ++G+D + ++++GTGK+ F + ++
Sbjct: 40 FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQC 99
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ TQ LIL PTRELA QI +AL ++ + +GGT D
Sbjct: 100 L--DIQVRETQ------ALILAPTRELAVQIQKGLLAL-GDYMNVQCHACIGGTNVGEDI 150
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
R+L+ ++ TPGR+ D I +S +R +KMLVLDEAD +L+ GF++ + ++
Sbjct: 151 RKLDYGQ-HVVAGTPGRVFDMIRRRS---LRTRAIKMLVLDEADEMLNKGFKEQIYDVYR 206
Query: 561 CLPRRRQSLLFSATMPKEVRRIS--------QLVLKREHTYIDTVGLGSVETPVKIKQSC 612
LP Q +L SAT+P E+ ++ ++++KR+ ++ IKQ
Sbjct: 207 YLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLE-----------GIKQFF 255
Query: 613 L-VAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRK 671
+ V E F L L + + ++FC+T L +RE V M+
Sbjct: 256 VAVEREEWKFDTLCDLYDTLTIT----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDM 311
Query: 672 PQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIH 723
PQ R+ I +EFR+ +L+++DV ARG+D P V+ ++ +P +RE YIH
Sbjct: 312 PQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIH 363
>pdb|2HXY|A Chain A, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|B Chain B, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|C Chain C, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|D Chain D, Crystal Structure Of Human Apo-Eif4aiii
Length = 391
Score = 150 bits (380), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 103/352 (29%), Positives = 179/352 (50%), Gaps = 37/352 (10%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
FD G+ ++ + A G+ + + +Q+ + ++G+D + ++++GTGK+ F + ++
Sbjct: 18 FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQC 77
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ TQ LIL PTRELA QI +AL ++ + +GGT D
Sbjct: 78 L--DIQVRETQ------ALILAPTRELAVQIQKGLLAL-GDYMNVQCHACIGGTNVGEDI 128
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
R+L+ ++ TPGR+ D I +S +R +KMLVLDEAD +L+ GF++ + ++
Sbjct: 129 RKLDYGQ-HVVAGTPGRVFDMIRRRS---LRTRAIKMLVLDEADEMLNKGFKEQIYDVYR 184
Query: 561 CLPRRRQSLLFSATMPKEVRRIS--------QLVLKREHTYIDTVGLGSVETPVKIKQSC 612
LP Q +L SAT+P E+ ++ ++++KR+ ++ IKQ
Sbjct: 185 YLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLE-----------GIKQFF 233
Query: 613 L-VAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRK 671
+ V E F L L + + ++FC+T L +RE V M+
Sbjct: 234 VAVEREEWKFDTLCDLYDTLTIT----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDM 289
Query: 672 PQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIH 723
PQ R+ I +EFR+ +L+++DV ARG+D P V+ ++ +P +RE YIH
Sbjct: 290 PQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIH 341
>pdb|2J0U|B Chain B, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
A Resolution
Length = 374
Score = 150 bits (379), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 103/355 (29%), Positives = 181/355 (50%), Gaps = 43/355 (12%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAF---LLPA 437
FD G+ ++ + A G+ + + +Q+ + ++G+D + ++++GTGK+ F +L
Sbjct: 3 FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQC 62
Query: 438 IEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFK 497
++ ++ T + LIL PTRELA Q+ +AL ++ + +GGT
Sbjct: 63 LDIQVRETQA-----------LILAPTRELAVQVQKGLLAL-GDYMNVQSHACIGGTNVG 110
Query: 498 VDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVEN 557
D R+L+ ++ TPGR+ D I +S +R +KMLVLDEAD +L+ GF++ + +
Sbjct: 111 EDIRKLDYGQ-HVVAGTPGRVFDMIRRRS---LRTRAIKMLVLDEADEMLNKGFKEQIYD 166
Query: 558 IVDCLPRRRQSLLFSATMPKEVRRIS--------QLVLKREHTYIDTVGLGSVETPVKIK 609
+ LP Q +L SAT+P EV ++ ++++KR+ ++ IK
Sbjct: 167 VYRYLPPATQVVLISATLPHEVLEMTNKFMTDPIRILVKRDELTLE-----------GIK 215
Query: 610 QSCL-VAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMY 668
Q + V E F L L + + ++FC+T L +RE V M+
Sbjct: 216 QFFVAVEREEWKFDTLCDLYDTLTIT----QAVIFCNTKRKVDWLTEKMREANFTVSSMH 271
Query: 669 SRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIH 723
PQ R+ I +EFR+ +L+++DV ARG+D P V+ ++ +P +RE YIH
Sbjct: 272 GDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIH 326
>pdb|2J0U|A Chain A, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
A Resolution
Length = 374
Score = 150 bits (378), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 102/355 (28%), Positives = 181/355 (50%), Gaps = 43/355 (12%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAF---LLPA 437
FD G+ ++ + A G+ + + +Q+ + ++G+D + ++++GTGK+ F +L
Sbjct: 3 FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQC 62
Query: 438 IEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFK 497
++ ++ T + LIL PTRELA Q+ +AL ++ + +GGT
Sbjct: 63 LDIQVRETQA-----------LILAPTRELAVQVQKGLLAL-GDYMNVQCHACIGGTNVG 110
Query: 498 VDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVEN 557
D R+L+ ++ TPGR+ D I +S +R +KMLVLDEAD +L+ GF++ + +
Sbjct: 111 EDIRKLDYGQ-HVVAGTPGRVFDMIRRRS---LRTRAIKMLVLDEADEMLNKGFKEQIYD 166
Query: 558 IVDCLPRRRQSLLFSATMPKEVRRIS--------QLVLKREHTYIDTVGLGSVETPVKIK 609
+ LP Q +L SAT+P E+ ++ ++++KR+ ++ IK
Sbjct: 167 VYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLE-----------GIK 215
Query: 610 QSCL-VAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMY 668
Q + V E F L L + + ++FC+T L +RE V M+
Sbjct: 216 QFFVAVEREEWKFDTLCDLYDTLTIT----QAVIFCNTKRKVDWLTEKMREANFTVSSMH 271
Query: 669 SRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIH 723
PQ R+ I +EFR+ +L+++DV ARG+D P V+ ++ +P +RE YIH
Sbjct: 272 GDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIH 326
>pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
pdb|1HV8|B Chain B, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
Length = 367
Score = 149 bits (377), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 106/344 (30%), Positives = 172/344 (50%), Gaps = 28/344 (8%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGK-DAVVKAKTGTGKSIAFLLPAIE 439
F+E +S + A+ G+ + T +Q + L + + V +A+TG+GK+ +F +P IE
Sbjct: 8 FNELNLSDNILNAIRNKGFEKPTDIQXKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIE 67
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
V + I +IL PTRELA Q+A E I LK + + + + GG
Sbjct: 68 LVNENNG---------IEAIILTPTRELAIQVADE-IESLKGNKNLKIAKIYGGKAIYPQ 117
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
+ L++ I+V TPGR+LDHI N+ L+ L +K +LDEAD L+ GF KDVE I+
Sbjct: 118 IKALKN--ANIVVGTPGRILDHI-NRGTLN--LKNVKYFILDEADEXLNXGFIKDVEKIL 172
Query: 560 DCLPRRRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIKQSCLVAPHEL 619
+ + ++ LLFSAT P+E+ +++ Y + I+QS +
Sbjct: 173 NACNKDKRILLFSATXPREILNLAK-------KYXGDYSFIKAKINANIEQSYVEVNENE 225
Query: 620 HFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRI 679
F+ L LLK ++ +VFC T T L LR++ ++ Q R+++
Sbjct: 226 RFEALCRLLK-----NKEFYGLVFCKTKRDTKELASXLRDIGFKAGAIHGDLSQSQREKV 280
Query: 680 SEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIH 723
F+ K IL+ +DV +RG+D D+ V+ +P + E Y H
Sbjct: 281 IRLFKQKKIRILIATDVXSRGIDVNDLNCVINYHLPQNPESYXH 324
>pdb|2PL3|A Chain A, Human Dead-Box Rna Helicase Ddx10, Dead Domain In Complex
With Adp
Length = 236
Score = 147 bits (371), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 89/216 (41%), Positives = 133/216 (61%), Gaps = 10/216 (4%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
RF + +S T+K L A Y +T +Q+ T+ L+GKD + AKTG+GK++AFL+P +E
Sbjct: 26 RFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLE 85
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
A+ + +ST L VLI+ PTRELA Q + KNHD L ++GG K +
Sbjct: 86 ALYRLQWTSTDGL----GVLIISPTRELAYQTFEVLRKVGKNHDFSAGL-IIGGKDLKHE 140
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
R+ + ILV TPGRLL H++ +S L+MLVLDEAD +LD+GF + ++
Sbjct: 141 AERINN--INILVCTPGRLLQHMDET--VSFHATDLQMLVLDEADRILDMGFADTMNAVI 196
Query: 560 DCLPRRRQSLLFSATMPKEVRRISQLVLKR-EHTYI 594
+ LP++RQ+LLFSAT K V+ +++L LK E+ ++
Sbjct: 197 ENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWV 232
>pdb|3LY5|A Chain A, Ddx18 Dead-Domain
pdb|3LY5|B Chain B, Ddx18 Dead-Domain
Length = 262
Score = 147 bits (370), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 82/207 (39%), Positives = 131/207 (63%), Gaps = 12/207 (5%)
Query: 390 TIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSST 449
T+KA+ G+ MT +Q ++ LEG+D + AKTG+GK++AFL+PA+E ++K
Sbjct: 65 TLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKL----- 119
Query: 450 TQLVP--PIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDP 507
+ +P VLIL PTRELA Q L+ +H L ++GG+ + ++L +
Sbjct: 120 -RFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGL-IMGGSNRSAEAQKL-GNG 176
Query: 508 CQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQ 567
I+VATPGRLLDH++N G + L+ LV+DEAD +LD+GF ++++ I+ LP RRQ
Sbjct: 177 INIIVATPGRLLDHMQNTPGFMYK--NLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQ 234
Query: 568 SLLFSATMPKEVRRISQLVLKREHTYI 594
++LFSAT ++V ++++ LK+E Y+
Sbjct: 235 TMLFSATQTRKVEDLARISLKKEPLYV 261
>pdb|1FUU|A Chain A, Yeast Initiation Factor 4a
pdb|1FUU|B Chain B, Yeast Initiation Factor 4a
Length = 394
Score = 147 bits (370), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 108/353 (30%), Positives = 176/353 (49%), Gaps = 38/353 (10%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+FD+ + ++ + G+ + + +Q+ + +EG D + +A++GTGK+ F + A++
Sbjct: 22 KFDDXELDENLLRGVFGYGFEEPSAIQQRAIXPIIEGHDVLAQAQSGTGKTGTFSIAALQ 81
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+ TS Q L L PTRELA QI + + L H I V +GGT F D
Sbjct: 82 RI--DTSVKAPQ------ALXLAPTRELALQIQ-KVVXALAFHXDIKVHACIGGTSFVED 132
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
L QI+V TPGR+ D+I+ + R +K +LDEAD L GF++ + I
Sbjct: 133 AEGLRD--AQIVVGTPGRVFDNIQRRR---FRTDKIKXFILDEADEXLSSGFKEQIYQIF 187
Query: 560 DCLPRRRQSLLFSATMPKEVRRIS--------QLVLKREHTYIDTVGLGSVETPVKIKQS 611
LP Q +L SAT P +V ++ ++++K++ ++ IKQ
Sbjct: 188 TLLPPTTQVVLLSATXPNDVLEVTTKFXRNPVRILVKKDELTLE-----------GIKQF 236
Query: 612 CL-VAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSR 670
+ V E ++ L L + I T + ++FC+T L LR K V +YS
Sbjct: 237 YVNVEEEEYKYECLTDLY-DSISVT---QAVIFCNTRRKVEELTTKLRNDKFTVSAIYSD 292
Query: 671 KPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIH 723
PQ RD I +EFR+ IL+++D+ ARG+D V+ V+ +P ++E YIH
Sbjct: 293 LPQQERDTIXKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIH 345
>pdb|3EIQ|A Chain A, Crystal Structure Of Pdcd4-eif4a
pdb|3EIQ|D Chain D, Crystal Structure Of Pdcd4-eif4a
Length = 414
Score = 146 bits (369), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 105/355 (29%), Positives = 177/355 (49%), Gaps = 42/355 (11%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAF---LLPA 437
FD+ +S ++ + A G+ + + +Q+ + C++G D + +A++GTGK+ F +L
Sbjct: 42 FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQ 101
Query: 438 IEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFK 497
IE LKAT + L+L PTRELA QI +AL ++ G +GGT +
Sbjct: 102 IELDLKATQA-----------LVLAPTRELAQQIQKVVMAL-GDYMGASCHACIGGTNVR 149
Query: 498 VDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVEN 557
+ ++L+ + I+V TPGR+ D + N+ LS + +KM VLDEAD +L GF+ + +
Sbjct: 150 AEVQKLQMEAPHIIVGTPGRVFDML-NRRYLSPKY--IKMFVLDEADEMLSRGFKDQIYD 206
Query: 558 IVDCLPRRRQSLLFSATMPKEVRRISQ--------LVLKREHTYIDTVGLGSVETPVKIK 609
I L Q +L SATMP +V +++ +++K+E ++ I+
Sbjct: 207 IFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLE-----------GIR 255
Query: 610 QSCL-VAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMY 668
Q + V E L L + + + ++F +T L + V M+
Sbjct: 256 QFYINVEREEWKLDTLCDLYETLTIT----QAVIFINTRRKVDWLTEKMHARDFTVSAMH 311
Query: 669 SRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIH 723
Q RD I EFR+ +L+T+D+ ARG+D V+ V+ +P +RE YIH
Sbjct: 312 GDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIH 366
>pdb|2ZU6|A Chain A, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|C Chain C, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|D Chain D, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|F Chain F, Crystal Structure Of The Eif4a-Pdcd4 Complex
Length = 388
Score = 145 bits (365), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 105/355 (29%), Positives = 177/355 (49%), Gaps = 42/355 (11%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAF---LLPA 437
FD+ +S ++ + A G+ + + +Q+ + C++G D + +A++GTGK+ F +L
Sbjct: 16 FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQ 75
Query: 438 IEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFK 497
IE LKAT + L+L PTRELA QI +AL ++ G +GGT +
Sbjct: 76 IELDLKATQA-----------LVLAPTRELAQQIQKVVMAL-GDYMGASCHACIGGTNVR 123
Query: 498 VDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVEN 557
+ ++L+ + I+V TPGR+ D + N+ LS + +KM VLDEAD +L GF+ + +
Sbjct: 124 AEVQKLQMEAPHIIVGTPGRVFDML-NRRYLSPKY--IKMFVLDEADEMLSRGFKDQIYD 180
Query: 558 IVDCLPRRRQSLLFSATMPKEVRRISQ--------LVLKREHTYIDTVGLGSVETPVKIK 609
I L Q +L SATMP +V +++ +++K+E ++ I+
Sbjct: 181 IFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLE-----------GIR 229
Query: 610 QSCL-VAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMY 668
Q + V E L L + + + ++F +T L + V M+
Sbjct: 230 QFYINVEREEWKLDTLCDLYETLTIT----QAVIFINTRRKVDWLTEKMHARDFTVSAMH 285
Query: 669 SRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIH 723
Q RD I EFR+ +L+T+D+ ARG+D V+ V+ +P +RE YIH
Sbjct: 286 GDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIH 340
>pdb|1S2M|A Chain A, Crystal Structure Of The Dead Box Protein Dhh1p
Length = 400
Score = 140 bits (352), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 104/332 (31%), Positives = 160/332 (48%), Gaps = 31/332 (9%)
Query: 397 AGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPI 456
AG+ + + +QE + + G+D + +AK GTGK+ AF++P +E V + I
Sbjct: 39 AGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNK--------I 90
Query: 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPG 516
LI+ PTRELA Q ++ + L H GI + GGT + D RL ++ ILV TPG
Sbjct: 91 QALIMVPTRELALQ-TSQVVRTLGKHCGISCMVTTGGTNLRDDILRL-NETVHILVGTPG 148
Query: 517 RLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMP 576
R+LD K L + ++DEAD +L F+ +E I+ LP QSLLFSAT P
Sbjct: 149 RVLDLASRKVA---DLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFP 205
Query: 577 KEVRRISQLVLKREHTYIDTVGLGSVETPVKIKQSCLVAPHELHFQILHHLLKEHILGTP 636
V+ + ++K H + + L T I Q ++ + K H L T
Sbjct: 206 LTVK---EFMVKHLHKPYE-INLMEELTLKGITQ---------YYAFVEERQKLHCLNTL 252
Query: 637 DYKV-----IVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLIL 691
K+ I+FC++ LL + ++ + ++R Q R+++ EFR K L
Sbjct: 253 FSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTL 312
Query: 692 VTSDVSARGMDYPDVTSVVQVGIPPDREQYIH 723
V SD+ RG+D V V+ P E Y+H
Sbjct: 313 VCSDLLTRGIDIQAVNVVINFDFPKTAETYLH 344
>pdb|2DB3|A Chain A, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|B Chain B, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|C Chain C, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|D Chain D, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
Length = 434
Score = 137 bits (344), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 103/349 (29%), Positives = 176/349 (50%), Gaps = 22/349 (6%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
+ F + + I + +GY T +Q+ ++ G+D + A+TG+GK+ AFLLP +
Sbjct: 56 QHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPIL 115
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIAL-LKNHDGIGVLTLVGGTRFK 497
+L+ +L P V+I+ PTRELA QI EA +++ IG+ + GGT F+
Sbjct: 116 SKLLE--DPHELELGRP-QVVIVSPTRELAIQIFNEARKFAFESYLKIGI--VYGGTSFR 170
Query: 498 VDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVEN 557
Q + C +++ATPGRLLD ++ + + +VLDEAD +LD+GF +D+
Sbjct: 171 -HQNECITRGCHVVIATPGRLLDFVDRT---FITFEDTRFVVLDEADRMLDMGFSEDMRR 226
Query: 558 IVDCLPRR--RQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVK-IKQSCLV 614
I+ + R Q+L+FSAT P+E++R++ LK Y+ V +G V +KQ+
Sbjct: 227 IMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLK---NYV-FVAIGIVGGACSDVKQTIYE 282
Query: 615 APHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQL 674
L +L E GT IVF T L L E + ++ + Q
Sbjct: 283 VNKYAKRSKLIEILSEQADGT-----IVFVETKRGADFLASFLSEKEFPTTSIHGDRLQS 337
Query: 675 YRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIH 723
R++ +F+ +L+ + V++RG+D ++ V+ +P + Y+H
Sbjct: 338 QREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVH 386
>pdb|2Z0M|A Chain A, Crystal Structure Of Hypothetical Atp-Dependent Rna
Helicase From Sulfolobus Tokodaii
Length = 337
Score = 136 bits (342), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 103/333 (30%), Positives = 168/333 (50%), Gaps = 38/333 (11%)
Query: 392 KALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQ 451
+A+ G+ T VQ T+ L+GK+ VV+AKTG+GK+ A+ +P +E +K+
Sbjct: 7 QAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILELGMKS------- 59
Query: 452 LVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQIL 511
L++ PTREL Q+A+ + + D V + GG +K R+ + I+
Sbjct: 60 -------LVVTPTRELTRQVASHIRDIGRYMD-TKVAEVYGGMPYKAQINRVRN--ADIV 109
Query: 512 VATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLF 571
VATPGRLLD S + L +++++DEAD + ++GF D++ I+ R+ + LF
Sbjct: 110 VATPGRLLDLW---SKGVIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQTSNRKITGLF 166
Query: 572 SATMPKEVRRISQLVLKREHTYIDTVGLGSVETP-VKIKQSCLVAPHELHFQILHHLLKE 630
SAT+P+E+R++ + + +GL +VE V +K ++ L+E
Sbjct: 167 SATIPEEIRKVVKDFITNYEEIEACIGLANVEHKFVHVKDD---------WRSKVQALRE 217
Query: 631 HILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLI 690
+ D VIVF T + L L N E+ PQ R+R + FR + +
Sbjct: 218 N----KDKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDM 269
Query: 691 LVTSDVSARGMDYPDVTSVVQVGIPPDREQYIH 723
L+T+DV++RG+D P V V+ P D YIH
Sbjct: 270 LITTDVASRGLDIPLVEKVINFDAPQDLRTYIH 302
>pdb|3BER|A Chain A, Human Dead-Box Rna-Helicase Ddx47, Conserved Domain I In
Complex With Amp
Length = 249
Score = 134 bits (337), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 79/218 (36%), Positives = 128/218 (58%), Gaps = 15/218 (6%)
Query: 374 PILSQ---KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKS 430
PI+ + K F + G++ + +A G+ + T++Q + L+G+D + A+TG+GK+
Sbjct: 35 PIVEEEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKT 94
Query: 431 IAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTL 490
AF LP + A+L+ ++ L+L PTRELA QI+ E L + G+ +
Sbjct: 95 GAFALPILNALLETPQR--------LFALVLTPTRELAFQIS-EQFEALGSSIGVQSAVI 145
Query: 491 VGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLG 550
VGG L P I++ATPGRL+DH+EN G ++R LK LV+DEAD +L++
Sbjct: 146 VGGIDSMSQSLALAKKP-HIIIATPGRLIDHLENTKGFNLR--ALKYLVMDEADRILNMD 202
Query: 551 FRKDVENIVDCLPRRRQSLLFSATMPKEVRRISQLVLK 588
F +V+ I+ +PR R++ LFSATM K+V+++ + LK
Sbjct: 203 FETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALK 240
>pdb|2I4I|A Chain A, Crystal Structure Of Human Dead-Box Rna Helicase Ddx3x
Length = 417
Score = 129 bits (324), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 111/359 (30%), Positives = 167/359 (46%), Gaps = 29/359 (8%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + + + + + Y + T VQ+ + E +D + A+TG+GK+ AFLLP +
Sbjct: 17 FSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQ 76
Query: 441 V-----------LKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLT 489
+ +K + PI L+L PTRELA QI EA +
Sbjct: 77 IYSDGPGEALRAMKENGRYGRRKQYPI-SLVLAPTRELAVQIYEEARKF-SYRSRVRPCV 134
Query: 490 LVGGTRFKVDQRRLESDPCQILVATPGRLLDHIE-NKSGLSVRLMGLKMLVLDEADHLLD 548
+ GG R LE C +LVATPGRL+D +E K GL K LVLDEAD +LD
Sbjct: 135 VYGGADIGQQIRDLERG-CHLLVATPGRLVDMMERGKIGLDF----CKYLVLDEADRMLD 189
Query: 549 LGFRKDVENIV--DCLPRR--RQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVET 604
+GF + IV D +P + R +++FSAT PKE++ +++ L E+ ++ +GS T
Sbjct: 190 MGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLD-EYIFLAVGRVGS--T 246
Query: 605 PVKIKQSCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNV 664
I Q + L LL D +VF T L L
Sbjct: 247 SENITQKVVWVEESDKRSFLLDLLNA---TGKDSLTLVFVETKKGADSLEDFLYHEGYAC 303
Query: 665 REMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIH 723
++ + Q R+ +FR+ K ILV + V+ARG+D +V V+ +P D E+Y+H
Sbjct: 304 TSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVH 362
>pdb|1XTK|A Chain A, Structure Of Decd To Dead Mutation Of Human Uap56
Length = 390
Score = 122 bits (307), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 102/349 (29%), Positives = 164/349 (46%), Gaps = 28/349 (8%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + + P ++A+ G+ + VQ + + G D + +AK+G GK+ F+L A
Sbjct: 9 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVL----A 64
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
L+ T Q + VL++C TRELA QI+ E K + V GG K D+
Sbjct: 65 TLQQLEPVTGQ----VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDE 120
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLD-LGFRKDVENIV 559
L+ + I+V TPGR+L NK S+ L +K +LDEAD +L+ L R+DV+ I
Sbjct: 121 EVLKKNCPHIVVGTPGRILALARNK---SLNLKHIKHFILDEADKMLEQLDMRRDVQEIF 177
Query: 560 DCLPRRRQSLLFSATMPKEVRRISQLVLK--REHTYIDTVGL---GSVETPVKIKQSCLV 614
P +Q ++FSAT+ KE+R + + ++ E D L G + VK+K +
Sbjct: 178 RMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDN--- 234
Query: 615 APHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQL 674
+ F +L L +V++F + L LL E ++ PQ
Sbjct: 235 EKNRKLFDLLDVL--------EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQE 286
Query: 675 YRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIH 723
R ++F+ +R ILV +++ RGMD V +P D + Y+H
Sbjct: 287 ERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLH 335
>pdb|1XTI|A Chain A, Structure Of Wildtype Human Uap56
Length = 391
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 101/349 (28%), Positives = 163/349 (46%), Gaps = 28/349 (8%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + + P ++A+ G+ + VQ + + G D + +AK+G GK+ F+L A
Sbjct: 10 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVL----A 65
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
L+ T Q + VL++C TRELA QI+ E K + V GG K D+
Sbjct: 66 TLQQLEPVTGQ----VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDE 121
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLD-LGFRKDVENIV 559
L+ + I+V TPGR+L NK S+ L +K +LDE D +L+ L R+DV+ I
Sbjct: 122 EVLKKNCPHIVVGTPGRILALARNK---SLNLKHIKHFILDECDKMLEQLDMRRDVQEIF 178
Query: 560 DCLPRRRQSLLFSATMPKEVRRISQLVLK--REHTYIDTVGL---GSVETPVKIKQSCLV 614
P +Q ++FSAT+ KE+R + + ++ E D L G + VK+K +
Sbjct: 179 RMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDN--- 235
Query: 615 APHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQL 674
+ F +L L +V++F + L LL E ++ PQ
Sbjct: 236 EKNRKLFDLLDVL--------EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQE 287
Query: 675 YRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIH 723
R ++F+ +R ILV +++ RGMD V +P D + Y+H
Sbjct: 288 ERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLH 336
>pdb|1XTJ|A Chain A, Structure Of Human Uap56 In Complex With Adp
Length = 386
Score = 120 bits (302), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 101/349 (28%), Positives = 163/349 (46%), Gaps = 28/349 (8%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + + P ++A+ G+ + VQ + + G D + +AK+G GK+ F+L A
Sbjct: 10 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVL----A 65
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
L+ T Q + VL++C TRELA QI+ E K + V GG K D+
Sbjct: 66 TLQQLEPVTGQ----VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDE 121
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLD-LGFRKDVENIV 559
L+ + I+V TPGR+L NK S+ L +K +LDE D +L+ L R+DV+ I
Sbjct: 122 EVLKKNCPHIVVGTPGRILALARNK---SLNLKHIKHFILDECDKMLEQLDMRRDVQEIF 178
Query: 560 DCLPRRRQSLLFSATMPKEVRRISQLVLK--REHTYIDTVGL---GSVETPVKIKQSCLV 614
P +Q ++FSAT+ KE+R + + ++ E D L G + VK+K +
Sbjct: 179 RMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDN--- 235
Query: 615 APHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQL 674
+ F +L L +V++F + L LL E ++ PQ
Sbjct: 236 EKNRKLFDLLDVL--------EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQE 287
Query: 675 YRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIH 723
R ++F+ +R ILV +++ RGMD V +P D + Y+H
Sbjct: 288 ERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLH 336
>pdb|2GXQ|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 1
pdb|2GXS|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 2
pdb|2GXS|B Chain B, Hera N-Terminal Domain In Complex With Amp, Crystal Form 2
pdb|2GXU|A Chain A, Hera N-Terminal Domain In Complex With Orthophosphate,
Crystal Form 1
Length = 207
Score = 116 bits (290), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 75/208 (36%), Positives = 119/208 (57%), Gaps = 12/208 (5%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + + P ++AL G T +Q A L LEGKD + +A+TGTGK++AF LP E
Sbjct: 3 FKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAER 62
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ + L+L PTRELA Q+A+E A+ + + V+ + GGT + +
Sbjct: 63 LAPSQERGRKP-----RALVLTPTRELALQVASELTAVAPH---LKVVAVYGGTGYGKQK 114
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L +VATPGR LD++ + G+ + L +++ VLDEAD +L +GF ++VE ++
Sbjct: 115 EALLRG-ADAVVATPGRALDYL--RQGV-LDLSRVEVAVLDEADEMLSMGFEEEVEALLS 170
Query: 561 CLPRRRQSLLFSATMPKEVRRISQLVLK 588
P RQ+LLFSAT+P +R+++ +K
Sbjct: 171 ATPPSRQTLLFSATLPSWAKRLAERYMK 198
>pdb|1VEC|A Chain A, Crystal Structure Of The N-Terminal Domain Of RckP54, A
Human Dead-Box Protein
pdb|1VEC|B Chain B, Crystal Structure Of The N-Terminal Domain Of RckP54, A
Human Dead-Box Protein
Length = 206
Score = 115 bits (287), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 71/185 (38%), Positives = 114/185 (61%), Gaps = 14/185 (7%)
Query: 398 GYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAV-LKATSSSTTQLVPPI 456
G+ + + +QE ++ L G+D + +AK GTGKS A+L+P +E + LK + I
Sbjct: 22 GWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDN---------I 72
Query: 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPG 516
+++ PTRELA Q++ I + K+ G V+ GGT + D RL+ D +++ATPG
Sbjct: 73 QAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLD-DTVHVVIATPG 131
Query: 517 RLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMP 576
R+LD I K G++ ++ ++M+VLDEAD LL F + +E+I+ LP+ RQ LL+SAT P
Sbjct: 132 RILDLI--KKGVA-KVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFP 188
Query: 577 KEVRR 581
V++
Sbjct: 189 LSVQK 193
>pdb|3MWJ|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form
pdb|3MWJ|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form
pdb|3MWK|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Complex
With 8-Oxo- Amp
pdb|3MWK|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Complex
With 8-Oxo- Amp
pdb|3MWL|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain In Complex
With 8- Oxoadenosine
pdb|3MWL|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain In Complex
With 8- Oxoadenosine
pdb|3NBF|A Chain A, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|B Chain B, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|C Chain C, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|D Chain D, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NEJ|A Chain A, Q28e Mutant Of Hera Rna Helicase N-Terminal Domain -
Perfectly Twinned Hexagonal Form
pdb|3NEJ|B Chain B, Q28e Mutant Of Hera Rna Helicase N-Terminal Domain -
Perfectly Twinned Hexagonal Form
Length = 207
Score = 114 bits (286), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/208 (35%), Positives = 119/208 (57%), Gaps = 12/208 (5%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + + P ++AL G T ++ A L LEGKD + +A+TGTGK++AF LP E
Sbjct: 3 FKDFPLKPEILEALHGRGLTTPTPIEAAALPLALEGKDLIGQARTGTGKTLAFALPIAER 62
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ + L+L PTRELA Q+A+E A+ + + V+ + GGT + +
Sbjct: 63 LAPSQERGRKP-----RALVLTPTRELALQVASELTAVAPH---LKVVAVYGGTGYGKQK 114
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L +VATPGR LD++ + G+ + L +++ VLDEAD +L +GF ++VE ++
Sbjct: 115 EALLRG-ADAVVATPGRALDYL--RQGV-LDLSRVEVAVLDEADEMLSMGFEEEVEALLS 170
Query: 561 CLPRRRQSLLFSATMPKEVRRISQLVLK 588
P RQ+LLFSAT+P +R+++ +K
Sbjct: 171 ATPPSRQTLLFSATLPSWAKRLAERYMK 198
>pdb|3PEW|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3
pdb|3RRM|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Nup159, Gle1 H337r, Ip6
And Adp
pdb|3RRN|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Gle1 H337r And Ip6
Length = 395
Score = 112 bits (281), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 102/356 (28%), Positives = 171/356 (48%), Gaps = 36/356 (10%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEG--KDAVVKAKTGTGKSIAFLLP 436
K FDE G++P +K + A + + +++QE L L ++ + ++++GTGK+ AF L
Sbjct: 5 KSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLT 64
Query: 437 AIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRF 496
+ V +S + L P+RELA Q E + + I +V +
Sbjct: 65 MLTRVNPEDASPQA--------ICLAPSRELARQ-TLEVVQEMGKFTKITSQLIVPDSFE 115
Query: 497 KVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDL-GFRKDV 555
K Q Q++V TPG +LD + K ++L +K+ VLDEAD++LD G
Sbjct: 116 KNKQIN-----AQVIVGTPGTVLDLMRRKL---MQLQKIKIFVLDEADNMLDQQGLGDQC 167
Query: 556 ENIVDCLPRRRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPV-KIKQSCLV 614
+ LP+ Q +LFSAT VR+ ++ ++ +T + L + E V IKQ +
Sbjct: 168 IRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANT----LELQTNEVNVDAIKQLYMD 223
Query: 615 APHEL-HFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQ 673
+E F +L L +G+ I+F +T ++LY L+ V ++
Sbjct: 224 CKNEADKFDVLTELYGVMTIGSS----IIFVATKKTANVLYGKLKSEGHEVSILHGDLQT 279
Query: 674 LYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIP------PDREQYIH 723
RDR+ ++FR + +L+T++V ARG+D P V+ VV +P D YIH
Sbjct: 280 QERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIH 335
>pdb|3PEY|A Chain A, S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3
Length = 395
Score = 112 bits (280), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 102/356 (28%), Positives = 171/356 (48%), Gaps = 36/356 (10%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEG--KDAVVKAKTGTGKSIAFLLP 436
K FDE G++P +K + A + + +++QE L L ++ + ++++GTGK+ AF L
Sbjct: 5 KSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLT 64
Query: 437 AIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRF 496
+ V +S + L P+RELA Q E + + I +V +
Sbjct: 65 MLTRVNPEDASPQA--------ICLAPSRELARQ-TLEVVQEMGKFTKITSQLIVPDSFE 115
Query: 497 KVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDL-GFRKDV 555
K Q Q++V TPG +LD + K ++L +K+ VLDEAD++LD G
Sbjct: 116 KNKQIN-----AQVIVGTPGTVLDLMRRKL---MQLQKIKIFVLDEADNMLDQQGLGDQC 167
Query: 556 ENIVDCLPRRRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPV-KIKQSCLV 614
+ LP+ Q +LFSAT VR+ ++ ++ +T + L + E V IKQ +
Sbjct: 168 IRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANT----LELQTNEVNVDAIKQLYMD 223
Query: 615 APHEL-HFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQ 673
+E F +L L +G+ I+F +T ++LY L+ V ++
Sbjct: 224 CKNEADKFDVLTELYGLMTIGSS----IIFVATKKTANVLYGKLKSEGHEVSILHGDLQT 279
Query: 674 LYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIP------PDREQYIH 723
RDR+ ++FR + +L+T++V ARG+D P V+ VV +P D YIH
Sbjct: 280 QERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIH 335
>pdb|1WRB|A Chain A, Crystal Structure Of The N-Terminal Reca-Like Domain Of
Djvlgb, A Pranarian Vasa-Like Rna Helicase
pdb|1WRB|B Chain B, Crystal Structure Of The N-Terminal Reca-Like Domain Of
Djvlgb, A Pranarian Vasa-Like Rna Helicase
Length = 253
Score = 111 bits (278), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 84/237 (35%), Positives = 127/237 (53%), Gaps = 17/237 (7%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
+ FDE + P + A Y + T +Q+ + A LE +D + A+TG+GK+ AFL+P I
Sbjct: 23 ENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPII 82
Query: 439 EAVL--KATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRF 496
++ ++ P LIL PTRELA QI +E+ N + + GG
Sbjct: 83 NHLVCQDLNQQRYSKTAYP-KCLILAPTRELAIQILSESQKFSLN-TPLRSCVVYGGADT 140
Query: 497 KVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVE 556
R ++ C +LVATPGRL+D IE + L K +VLDEAD +LD+GF +
Sbjct: 141 HSQIREVQMG-CHLLVATPGRLVDFIEKN---KISLEFCKYIVLDEADRMLDMGFEPQIR 196
Query: 557 NIVD--CLPR--RRQSLLFSATMPKEVRRISQLVLKREHTYI-DTVG-LGSVETPVK 607
I++ +P RQ+L+FSAT PKE+++++ L + YI TVG +GS +K
Sbjct: 197 KIIEESNMPSGINRQTLMFSATFPKEIQKLAADFL---YNYIFMTVGRVGSTSDSIK 250
>pdb|3FMP|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|D Chain D, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 479
Score = 110 bits (274), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 103/367 (28%), Positives = 163/367 (44%), Gaps = 45/367 (12%)
Query: 374 PILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEG--KDAVVKAKTGTGKSI 431
P+ S K F+E + P ++ + A G+ + +++QE L L ++ + ++++GTGK+
Sbjct: 87 PLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTA 146
Query: 432 AFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLV 491
AF+L + V A L L PT ELA Q + K + + + V
Sbjct: 147 AFVLAMLSQVEPANKYPQ--------CLCLSPTYELALQTGKVIEQMGKFYPELKLAYAV 198
Query: 492 GGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDL-G 550
G + + Q+ E QI++ TPG +LD + + +K+ VLDEAD ++ G
Sbjct: 199 RGNKLERGQKISE----QIVIGTPGTVLDWCSKLKFIDPK--KIKVFVLDEADVMIATQG 252
Query: 551 FRKDVENIVDCLPRRRQSLLFSATMPKEVRRISQLV--------LKREHTYIDTVGLGSV 602
+ I LPR Q LLFSAT V + +Q V LKRE +DT+ V
Sbjct: 253 HQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYV 312
Query: 603 ETPVKIKQSCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKM 662
L + + FQ L +L + + ++FC T S L L +
Sbjct: 313 ----------LCSSRDEKFQALCNLYGAITIA----QAMIFCHTRKTASWLAAELSKEGH 358
Query: 663 NVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIP------P 716
V + R + E FR K +LVT++V ARG+D V+ V+ +P P
Sbjct: 359 QVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNP 418
Query: 717 DREQYIH 723
D E Y+H
Sbjct: 419 DNETYLH 425
>pdb|3G0H|A Chain A, Human Dead-box Rna Helicase Ddx19, In Complex With An
Atp-analogue And Rna
Length = 424
Score = 110 bits (274), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 103/367 (28%), Positives = 163/367 (44%), Gaps = 45/367 (12%)
Query: 374 PILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEG--KDAVVKAKTGTGKSI 431
P+ S K F+E + P ++ + A G+ + +++QE L L ++ + ++++GTGK+
Sbjct: 36 PLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTA 95
Query: 432 AFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLV 491
AF+L + V A L L PT ELA Q + K + + + V
Sbjct: 96 AFVLAMLSQVEPANKYPQC--------LCLSPTYELALQTGKVIEQMGKFYPELKLAYAV 147
Query: 492 GGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDL-G 550
G + + Q+ E QI++ TPG +LD + + +K+ VLDEAD ++ G
Sbjct: 148 RGNKLERGQKISE----QIVIGTPGTVLDWCSKLKFIDPK--KIKVFVLDEADVMIATQG 201
Query: 551 FRKDVENIVDCLPRRRQSLLFSATMPKEVRRISQLV--------LKREHTYIDTVGLGSV 602
+ I LPR Q LLFSAT V + +Q V LKRE +DT+ V
Sbjct: 202 HQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYV 261
Query: 603 ETPVKIKQSCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKM 662
L + + FQ L +L + + ++FC T S L L +
Sbjct: 262 ----------LCSSRDEKFQALCNLYGAITIA----QAMIFCHTRKTASWLAAELSKEGH 307
Query: 663 NVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIP------P 716
V + R + E FR K +LVT++V ARG+D V+ V+ +P P
Sbjct: 308 QVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNP 367
Query: 717 DREQYIH 723
D E Y+H
Sbjct: 368 DNETYLH 374
>pdb|3FHT|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
pdb|3FHT|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
Length = 412
Score = 110 bits (274), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 103/367 (28%), Positives = 163/367 (44%), Gaps = 45/367 (12%)
Query: 374 PILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEG--KDAVVKAKTGTGKSI 431
P+ S K F+E + P ++ + A G+ + +++QE L L ++ + ++++GTGK+
Sbjct: 20 PLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTA 79
Query: 432 AFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLV 491
AF+L + V A L L PT ELA Q + K + + + V
Sbjct: 80 AFVLAMLSQVEPANKYPQC--------LCLSPTYELALQTGKVIEQMGKFYPELKLAYAV 131
Query: 492 GGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDL-G 550
G + + Q+ E QI++ TPG +LD + + +K+ VLDEAD ++ G
Sbjct: 132 RGNKLERGQKISE----QIVIGTPGTVLDWCSKLKFIDPK--KIKVFVLDEADVMIATQG 185
Query: 551 FRKDVENIVDCLPRRRQSLLFSATMPKEVRRISQLV--------LKREHTYIDTVGLGSV 602
+ I LPR Q LLFSAT V + +Q V LKRE +DT+ V
Sbjct: 186 HQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYV 245
Query: 603 ETPVKIKQSCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKM 662
L + + FQ L +L + + ++FC T S L L +
Sbjct: 246 ----------LCSSRDEKFQALCNLYGAITIA----QAMIFCHTRKTASWLAAELSKEGH 291
Query: 663 NVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIP------P 716
V + R + E FR K +LVT++V ARG+D V+ V+ +P P
Sbjct: 292 QVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNP 351
Query: 717 DREQYIH 723
D E Y+H
Sbjct: 352 DNETYLH 358
>pdb|3EWS|A Chain A, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
pdb|3EWS|B Chain B, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
Length = 445
Score = 110 bits (274), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 103/367 (28%), Positives = 163/367 (44%), Gaps = 45/367 (12%)
Query: 374 PILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEG--KDAVVKAKTGTGKSI 431
P+ S K F+E + P ++ + A G+ + +++QE L L ++ + ++++GTGK+
Sbjct: 57 PLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTA 116
Query: 432 AFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLV 491
AF+L + V A L L PT ELA Q + K + + + V
Sbjct: 117 AFVLAMLSQVEPANKYPQC--------LCLSPTYELALQTGKVIEQMGKFYPELKLAYAV 168
Query: 492 GGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDL-G 550
G + + Q+ E QI++ TPG +LD + + +K+ VLDEAD ++ G
Sbjct: 169 RGNKLERGQKISE----QIVIGTPGTVLDWCSKLKFIDPK--KIKVFVLDEADVMIATQG 222
Query: 551 FRKDVENIVDCLPRRRQSLLFSATMPKEVRRISQLV--------LKREHTYIDTVGLGSV 602
+ I LPR Q LLFSAT V + +Q V LKRE +DT+ V
Sbjct: 223 HQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYV 282
Query: 603 ETPVKIKQSCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKM 662
L + + FQ L +L + + ++FC T S L L +
Sbjct: 283 ----------LCSSRDEKFQALCNLYGAITIA----QAMIFCHTRKTASWLAAELSKEGH 328
Query: 663 NVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIP------P 716
V + R + E FR K +LVT++V ARG+D V+ V+ +P P
Sbjct: 329 QVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNP 388
Query: 717 DREQYIH 723
D E Y+H
Sbjct: 389 DNETYLH 395
>pdb|1QVA|A Chain A, Yeast Initiation Factor 4a N-Terminal Domain
Length = 223
Score = 107 bits (268), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 110/204 (53%), Gaps = 14/204 (6%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+FD+ + ++ + G+ + + +Q+ + +EG D + +A++GTGK+ F + A++
Sbjct: 22 KFDDMELDEQLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQ 81
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+ TS Q L+L PTRELA QI +AL + D I V +GGT F D
Sbjct: 82 RI--DTSVKAPQ------ALMLAPTRELALQIQKVVMALAFHMD-IKVHACIGGTSFVED 132
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
L QI+V TPGR+ D+I+ + R +KM +LDEAD +L GF++ + I
Sbjct: 133 AEGLRD--AQIVVGTPGRVFDNIQRRR---FRTDKIKMFILDEADEMLSSGFKEQIYQIF 187
Query: 560 DCLPRRRQSLLFSATMPKEVRRIS 583
LP Q +L SATMP +V ++
Sbjct: 188 TLLPPTTQVVLLSATMPNDVLEVT 211
>pdb|1QDE|A Chain A, Crystal Structure Of The Atpase Domain Of Translation
Initiation Factor 4a From Saccharomyces Cerevisiae-The
Prototype Of The Dead Box Protein Family
Length = 224
Score = 107 bits (267), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 110/204 (53%), Gaps = 14/204 (6%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+FD+ + ++ + G+ + + +Q+ + +EG D + +A++GTGK+ F + A++
Sbjct: 15 KFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQ 74
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+ TS Q L+L PTRELA QI +AL + D I V +GGT F D
Sbjct: 75 RI--DTSVKAPQ------ALMLAPTRELALQIQKVVMALAFHMD-IKVHACIGGTSFVED 125
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
L QI+V TPGR+ D+I+ + R +KM +LDEAD +L GF++ + I
Sbjct: 126 AEGLRD--AQIVVGTPGRVFDNIQRRR---FRTDKIKMFILDEADEMLSSGFKEQIYQIF 180
Query: 560 DCLPRRRQSLLFSATMPKEVRRIS 583
LP Q +L SATMP +V ++
Sbjct: 181 TLLPPTTQVVLLSATMPNDVLEVT 204
>pdb|3BOR|A Chain A, Crystal Structure Of The Deadc Domain Of Human Translation
Initiation Factor 4a-2
Length = 237
Score = 107 bits (267), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 66/207 (31%), Positives = 113/207 (54%), Gaps = 18/207 (8%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAF---LLPA 437
FD+ + ++ + A G+ + + +Q+ + C++G D + +A++GTGK+ F +L
Sbjct: 32 FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQ 91
Query: 438 IEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFK 497
+E K T + L+L PTRELA QI + I L ++ G +GGT +
Sbjct: 92 LEIEFKETQA-----------LVLAPTRELAQQIQ-KVILALGDYMGATCHACIGGTNVR 139
Query: 498 VDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVEN 557
+ ++L+++ I+V TPGR+ D + N+ LS + +KM VLDEAD +L GF+ +
Sbjct: 140 NEMQKLQAEAPHIVVGTPGRVFDML-NRRYLSPKW--IKMFVLDEADEMLSRGFKDQIYE 196
Query: 558 IVDCLPRRRQSLLFSATMPKEVRRISQ 584
I L Q +L SATMP +V +++
Sbjct: 197 IFQKLNTSIQVVLLSATMPTDVLEVTK 223
>pdb|1T6N|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Uap56
pdb|1T6N|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human Uap56
Length = 220
Score = 106 bits (264), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 105/200 (52%), Gaps = 12/200 (6%)
Query: 386 ISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKAT 445
+ P ++A+ G+ + VQ + + G D + +AK+G GK+ F+L A L+
Sbjct: 21 LKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVL----ATLQQL 76
Query: 446 SSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLES 505
T Q + VL++C TRELA QI+ E K + V GG K D+ L+
Sbjct: 77 EPVTGQ----VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKK 132
Query: 506 DPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLD-LGFRKDVENIVDCLPR 564
+ I+V TPGR+L NK S+ L +K +LDE D +L+ L R+DV+ I P
Sbjct: 133 NCPHIVVGTPGRILALARNK---SLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPH 189
Query: 565 RRQSLLFSATMPKEVRRISQ 584
+Q ++FSAT+ KE+R + +
Sbjct: 190 EKQVMMFSATLSKEIRPVCR 209
>pdb|2G9N|A Chain A, Structure Of The Dead Domain Of Human Eukaryotic
Initiation Factor 4a, Eif4a
pdb|2G9N|B Chain B, Structure Of The Dead Domain Of Human Eukaryotic
Initiation Factor 4a, Eif4a
Length = 221
Score = 105 bits (261), Expect = 1e-22, Method: Composition-based stats.
Identities = 67/211 (31%), Positives = 109/211 (51%), Gaps = 18/211 (8%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAF---LLPA 437
FD+ +S ++ + A G+ + +Q+ + C+ G D + +A++GTG + F +L
Sbjct: 17 FDDMNLSESLLRGIYAYGFEXPSAIQQRAILPCIXGYDVIAQAQSGTGXTATFAISILQQ 76
Query: 438 IEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFK 497
IE L AT + L+L PTRELA QI +AL ++ G +GGT +
Sbjct: 77 IELDLXATQA-----------LVLAPTRELAQQIQXVVMAL-GDYMGASCHACIGGTNVR 124
Query: 498 VDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVEN 557
+ + L+ + I+V TPGR+ D + N+ LS + M VLDEAD +L GF + +
Sbjct: 125 AEVQXLQMEAPHIIVGTPGRVFDML-NRRYLSPXY--IXMFVLDEADEMLSRGFXDQIYD 181
Query: 558 IVDCLPRRRQSLLFSATMPKEVRRISQLVLK 588
I L Q +L SATMP +V ++ ++
Sbjct: 182 IFQXLNSNTQVVLLSATMPSDVLEVTXXFMR 212
>pdb|1Q0U|A Chain A, Crystal Structure Of The Bstdead N-Terminal Domain
pdb|1Q0U|B Chain B, Crystal Structure Of The Bstdead N-Terminal Domain
Length = 219
Score = 100 bits (248), Expect = 5e-21, Method: Composition-based stats.
Identities = 66/207 (31%), Positives = 108/207 (52%), Gaps = 15/207 (7%)
Query: 377 SQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLP 436
++ +F P I+A+ + + T +QE + L G+ V +++TGTGK+ A+LLP
Sbjct: 2 AETQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESXVGQSQTGTGKTHAYLLP 61
Query: 437 AIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLK---NHDGIGVLTLVGG 493
E + + + +I PTRELA+QI E + + K I L+GG
Sbjct: 62 IXEKIKPERAE--------VQAVITAPTRELATQIYHETLKITKFCPKDRXIVARCLIGG 113
Query: 494 TRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRK 553
T + +L P I++ TPGR+ D I + ++ + +LV+DEAD LD GF
Sbjct: 114 TDKQKALEKLNVQP-HIVIGTPGRINDFIREQ---ALDVHTAHILVVDEADLXLDXGFIT 169
Query: 554 DVENIVDCLPRRRQSLLFSATMPKEVR 580
DV+ I P+ Q L+FSAT+P++++
Sbjct: 170 DVDQIAARXPKDLQXLVFSATIPEKLK 196
>pdb|4A4D|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Human
Dead-Box Rna Helicase Ddx5 (P68)
Length = 253
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/215 (34%), Positives = 108/215 (50%), Gaps = 11/215 (5%)
Query: 374 PILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAF 433
P+L+ F E + + + + T +Q L G D V A+TG+GK++++
Sbjct: 41 PVLN---FYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSY 97
Query: 434 LLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGG 493
LLPAI + PI L+L PTRELA Q+ A + + + GG
Sbjct: 98 LLPAIVHINHQPFLERGD--GPI-CLVLAPTRELAQQVQQVAAEYCRACR-LKSTCIYGG 153
Query: 494 TRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRK 553
R LE +I +ATPGRL+D +E L LVLDEAD +LD+GF
Sbjct: 154 APKGPQIRDLERG-VEICIATPGRLIDFLECGK---TNLRRTTYLVLDEADRMLDMGFEP 209
Query: 554 DVENIVDCLPRRRQSLLFSATMPKEVRRISQLVLK 588
+ IVD + RQ+L++SAT PKEVR++++ LK
Sbjct: 210 QIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLK 244
>pdb|3FE2|A Chain A, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I
In Complex With Adp
pdb|3FE2|B Chain B, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I
In Complex With Adp
Length = 242
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 78/230 (33%), Positives = 116/230 (50%), Gaps = 15/230 (6%)
Query: 374 PILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAF 433
P+L+ F E + + + + T +Q L G D V A+TG+GK++++
Sbjct: 27 PVLN---FYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSY 83
Query: 434 LLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGG 493
LLPAI + PI L+L PTRELA Q+ A + + + GG
Sbjct: 84 LLPAIVHINHQPFLERGD--GPI-CLVLAPTRELAQQVQQVAAEYCRACR-LKSTCIYGG 139
Query: 494 TRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRK 553
R LE +I +ATPGRL+D +E L LVLDEAD +LD+GF
Sbjct: 140 APKGPQIRDLERG-VEICIATPGRLIDFLECGK---TNLRRTTYLVLDEADRMLDMGFEP 195
Query: 554 DVENIVDCLPRRRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVE 603
+ IVD + RQ+L++SAT PKEVR++++ LK YI + +G++E
Sbjct: 196 QIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLK---DYIH-INIGALE 241
>pdb|3IUY|A Chain A, Crystal Structure Of Ddx53 Dead-Box Domain
pdb|3IUY|B Chain B, Crystal Structure Of Ddx53 Dead-Box Domain
Length = 228
Score = 91.7 bits (226), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/201 (34%), Positives = 108/201 (53%), Gaps = 8/201 (3%)
Query: 388 PLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSS 447
P +K++ G ++ T +Q L+G D +V A+TGTGK++++L+P L +
Sbjct: 29 PDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIH-LDSQPI 87
Query: 448 STTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDP 507
S Q P +L+L PTRELA + AE ++ G+ + + GG R + Q S
Sbjct: 88 SREQRNGP-GMLVLTPTRELALHVEAECSKY--SYKGLKSICIYGG-RNRNGQIEDISKG 143
Query: 508 CQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQ 567
I++ATPGRL D N S V L + LV+DEAD +LD+ F + I+ + RQ
Sbjct: 144 VDIIIATPGRLNDLQMNNS---VNLRSITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQ 200
Query: 568 SLLFSATMPKEVRRISQLVLK 588
+++ SAT P VR+++ LK
Sbjct: 201 TVMTSATWPDTVRQLALSYLK 221
>pdb|2OXC|A Chain A, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex
With Adp
pdb|2OXC|B Chain B, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex
With Adp
pdb|3B7G|A Chain A, Human Dead-Box Rna Helicase Ddx20, Conserved Domain I
(Dead) In Complex With Amppnp
(Adenosine-(Beta,Gamma)-Imidotriphosphate)
pdb|3B7G|B Chain B, Human Dead-Box Rna Helicase Ddx20, Conserved Domain I
(Dead) In Complex With Amppnp
(Adenosine-(Beta,Gamma)-Imidotriphosphate)
Length = 230
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 106/203 (52%), Gaps = 24/203 (11%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F+ +S ++ L AAG+ + + VQ + G D +V+AK+GTGK+ F A+++
Sbjct: 26 FESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDS 85
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
++ S+ +LIL PTRE+A QI + A+ +G+ +GGT D+
Sbjct: 86 LVLENLSTQ--------ILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDK 137
Query: 501 RRLESDPCQILVATPGRL-----LDHIENKSGLSVRLMGLKMLVLDEADHLLDLG-FRKD 554
RL+ C I V +PGR+ LD++ S +++ +LDEAD LL+ G F++
Sbjct: 138 TRLKK--CHIAVGSPGRIKQLIELDYLNPGS--------IRLFILDEADKLLEEGSFQEQ 187
Query: 555 VENIVDCLPRRRQSLLFSATMPK 577
+ I LP +Q L SAT P+
Sbjct: 188 INWIYSSLPASKQMLAVSATYPE 210
>pdb|3FHO|A Chain A, Structure Of S. Pombe Dbp5
pdb|3FHO|B Chain B, Structure Of S. Pombe Dbp5
Length = 508
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 95/338 (28%), Positives = 150/338 (44%), Gaps = 50/338 (14%)
Query: 404 RVQEATLSACLEG--KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLIL 461
++QE L L ++ + ++++GTGK+ AF L + V + VP + L
Sbjct: 144 KIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDAS--------VPKPQAICL 195
Query: 462 CPTRELASQIAAEAIALLKNHDGIGVLTLVGG-TRFKVDQRRLESDP------CQILVAT 514
P+RELA QI + V+T +G T K +S P QI++ T
Sbjct: 196 APSRELARQI-------------MDVVTEMGKYTEVKTAFGIKDSVPKGAKIDAQIVIGT 242
Query: 515 PGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDL-GFRKDVENIVDCLPRRRQSLLFSA 573
PG ++D ++ + L R +K+ VLDEAD++LD G I LPR Q +LFSA
Sbjct: 243 PGTVMDLMKRRQ-LDAR--DIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSA 299
Query: 574 TMPKEVRRISQLVLKREHTYIDTVGLGSVETPVK-IKQSCLVAPHELH-FQILHHLLKEH 631
T + V + ++ R + + L + E V+ IKQ + E H + +L L
Sbjct: 300 TFSERVEKYAE----RFAPNANEIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVELYGLL 355
Query: 632 ILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLIL 691
+G + I+FC + + V + RD I + FR +L
Sbjct: 356 TIG----QSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVL 411
Query: 692 VTSDVSARGMDYPDVTSVVQVGIP------PDREQYIH 723
VT++V ARG+D V VV +P PD + Y+H
Sbjct: 412 VTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLH 449
>pdb|2KBE|A Chain A, Solution Structure Of Amino-Terminal Domain Of Dbp5p
Length = 226
Score = 79.7 bits (195), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 110/222 (49%), Gaps = 20/222 (9%)
Query: 374 PILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEG--KDAVVKAKTGTGKSI 431
P+ S K FDE G++P +K + A + + +++QE L L ++ + ++++GTGK+
Sbjct: 17 PLYSAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTA 76
Query: 432 AFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLV 491
AF L + V +S + L P+RELA Q E + + I +V
Sbjct: 77 AFSLTMLTRVNPEDASPQA--------ICLAPSRELARQ-TLEVVQEMGKFTKITSQLIV 127
Query: 492 GGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLD-LG 550
+ K Q Q++V TPG +LD + K ++L +K+ VLDEAD++LD G
Sbjct: 128 PDSFEKNKQIN-----AQVIVGTPGTVLDLMRRK---LMQLQKIKIFVLDEADNMLDQQG 179
Query: 551 FRKDVENIVDCLPRRRQSLLFSATMPKEVRRISQLVLKREHT 592
+ LP+ Q +LFSAT VR+ ++ ++ +T
Sbjct: 180 LGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANT 221
>pdb|3FHC|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Nup214
Length = 235
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 104/217 (47%), Gaps = 17/217 (7%)
Query: 374 PILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLE--GKDAVVKAKTGTGKSI 431
P+ S K F+E + P ++ + A G+ + +++QE L L ++ + ++++GTGK+
Sbjct: 20 PLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTA 79
Query: 432 AFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLV 491
AF+L + V A L L PT ELA Q + K + + + V
Sbjct: 80 AFVLAMLSQVEPANKYPQC--------LCLSPTYELALQTGKVIEQMGKFYPELKLAYAV 131
Query: 492 GGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDL-G 550
G + + Q+ E QI++ TPG +LD + + +K+ VLDEAD ++ G
Sbjct: 132 RGNKLERGQKISE----QIVIGTPGTVLDWCSKLKFIDPK--KIKVFVLDEADVMIATQG 185
Query: 551 FRKDVENIVDCLPRRRQSLLFSATMPKEVRRISQLVL 587
+ I LPR Q LLFSAT V + +Q V+
Sbjct: 186 HQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVV 222
>pdb|3FMO|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 300
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 104/217 (47%), Gaps = 17/217 (7%)
Query: 374 PILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEG--KDAVVKAKTGTGKSI 431
P+ S K F+E + P ++ + A G+ + +++QE L L ++ + ++++GTGK+
Sbjct: 87 PLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTA 146
Query: 432 AFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLV 491
AF+L + V A L L PT ELA Q + K + + + V
Sbjct: 147 AFVLAMLSQVEPANKYPQ--------CLCLSPTYELALQTGKVIEQMGKFYPELKLAYAV 198
Query: 492 GGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDL-G 550
G + + Q+ E QI++ TPG +LD + + +K+ VLDEAD ++ G
Sbjct: 199 RGNKLERGQKISE----QIVIGTPGTVLDWCSKLKFIDPK--KIKVFVLDEADVMIATQG 252
Query: 551 FRKDVENIVDCLPRRRQSLLFSATMPKEVRRISQLVL 587
+ I LPR Q LLFSAT V + +Q V+
Sbjct: 253 HQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVV 289
>pdb|3DKP|A Chain A, Human Dead-Box Rna-Helicase Ddx52, Conserved Domain I In
Complex With Adp
Length = 245
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/225 (28%), Positives = 108/225 (48%), Gaps = 26/225 (11%)
Query: 374 PILSQKRFD-ECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIA 432
PI + ++ D E I+ ++ + AG+ T +Q + L G++ + A TG+GK++A
Sbjct: 23 PIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLA 82
Query: 433 FLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVL---- 488
F +P + + + + LI+ PTRELASQI E L+K +G G
Sbjct: 83 FSIPILMQLKQPANKG-------FRALIISPTRELASQIHRE---LIKISEGTGFRIHMI 132
Query: 489 --TLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHL 546
V +F S ILV TP RL+ ++ + + L ++ LV+DE+D L
Sbjct: 133 HKAAVAAKKFGPK----SSKKFDILVTTPNRLI-YLLKQDPPGIDLASVEWLVVDESDKL 187
Query: 547 LD---LGFRKDVENI-VDCLPRRRQSLLFSATMPKEVRRISQLVL 587
+ GFR + +I + C + + +FSAT +V + +L L
Sbjct: 188 FEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNL 232
>pdb|1FUK|A Chain A, Crystal Structure Of The Carboxy Terminal Domain Of Yeast
Eif4a
Length = 165
Score = 65.9 bits (159), Expect = 9e-11, Method: Composition-based stats.
Identities = 32/85 (37%), Positives = 49/85 (57%)
Query: 639 KVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSA 698
+ ++FC+T L LR K V +YS PQ RD I +EFR+ IL+++D+ A
Sbjct: 32 QAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLA 91
Query: 699 RGMDYPDVTSVVQVGIPPDREQYIH 723
RG+D V+ V+ +P ++E YIH
Sbjct: 92 RGIDVQQVSLVINYDLPANKENYIH 116
>pdb|4DB4|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To A Chimaeric
Rna-Dna Duplex
pdb|4DB4|B Chain B, Mss116p Dead-Box Helicase Domain 2 Bound To A Chimaeric
Rna-Dna Duplex
Length = 256
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 59/106 (55%), Gaps = 3/106 (2%)
Query: 621 FQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLR-EMK--MNVREMYSRKPQLYRD 677
F + H+ K+ +YK I+F T TS L +L+ E K + + E + + Q R
Sbjct: 17 FAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRT 76
Query: 678 RISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIH 723
+ + F+ + ILV +DV ARGMD+P+V V+Q+G+P + YIH
Sbjct: 77 SLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIH 122
>pdb|4DB2|C Chain C, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
pdb|4DB2|D Chain D, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
Length = 257
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 59/106 (55%), Gaps = 3/106 (2%)
Query: 621 FQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLR-EMK--MNVREMYSRKPQLYRD 677
F + H+ K+ +YK I+F T TS L +L+ E K + + E + + Q R
Sbjct: 17 FAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRT 76
Query: 678 RISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIH 723
+ + F+ + ILV +DV ARGMD+P+V V+Q+G+P + YIH
Sbjct: 77 SLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIH 122
>pdb|4DB2|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
pdb|4DB2|B Chain B, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
Length = 257
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 59/106 (55%), Gaps = 3/106 (2%)
Query: 621 FQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLR-EMK--MNVREMYSRKPQLYRD 677
F + H+ K+ +YK I+F T TS L +L+ E K + + E + + Q R
Sbjct: 17 FAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRT 76
Query: 678 RISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIH 723
+ + F+ + ILV +DV ARGMD+P+V V+Q+G+P + YIH
Sbjct: 77 SLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIH 122
>pdb|3EAQ|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase Hera
Form 2, Complete Dimer, Symmetric
pdb|3EAQ|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase Hera
Form 2, Complete Dimer, Symmetric
pdb|3EAR|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Partial Dimer
pdb|3EAR|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Partial Dimer
pdb|3EAS|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Complete Dimer, Asymmetric
pdb|3EAS|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Complete Dimer, Asymmetric
Length = 212
Score = 51.6 bits (122), Expect = 2e-06, Method: Composition-based stats.
Identities = 40/143 (27%), Positives = 63/143 (44%), Gaps = 4/143 (2%)
Query: 603 ETPVKIKQSCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKM 662
+ PV ++ + AP ++L LL + +PD + +VF T T + L +
Sbjct: 1 DEPVTYEEEAVPAPVRGRLEVLSDLL---YVASPD-RAMVFTRTKAETEEIAQGLLRLGH 56
Query: 663 NVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYI 722
+ ++ Q R+R+ FR + +LV +DV+ARG+D P V VV +P E Y
Sbjct: 57 PAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQ 116
Query: 723 HXXXXXXXXXXXXXXVLLLAPWE 745
H VLL P E
Sbjct: 117 HRSGRTGRAGRGGRVVLLYGPRE 139
>pdb|3I32|A Chain A, Dimeric Structure Of A Hera Helicase Fragment Including
The C-Terminal Reca Domain, The Dimerization Domain, And
The Rna Binding Domain
Length = 300
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 61/140 (43%), Gaps = 4/140 (2%)
Query: 606 VKIKQSCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVR 665
V ++ + AP ++L LL + +PD + +VF T T + L + +
Sbjct: 1 VTYEEEAVPAPVRGRLEVLSDLL---YVASPD-RAMVFTRTKAETEEIAQGLLRLGHPAQ 56
Query: 666 EMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHXX 725
++ Q R+R+ FR + +LV +DV+ARG+D P V VV +P E Y H
Sbjct: 57 ALHGDMSQGERERVMGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRS 116
Query: 726 XXXXXXXXXXXXVLLLAPWE 745
VLL P E
Sbjct: 117 GRTGRAGRGGRVVLLYGPRE 136
>pdb|2KBF|A Chain A, Solution Structure Of Carboxyl-Terminal Domain Of Dbp5p
Length = 187
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 59/123 (47%), Gaps = 11/123 (8%)
Query: 608 IKQSCLVAPHELH-FQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVRE 666
IKQ + +E F +L L +G+ I+F +T ++LY L+ V
Sbjct: 9 IKQLYMDCKNEADKFDVLTELYGLMTIGSS----IIFVATKKTANVLYGKLKSEGHEVSI 64
Query: 667 MYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIP------PDREQ 720
++ RDR+ ++FR + +L+T++V ARG+D P V+ VV +P D
Sbjct: 65 LHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPAT 124
Query: 721 YIH 723
YIH
Sbjct: 125 YIH 127
>pdb|2P6N|A Chain A, Human Dead-box Rna Helicase Ddx41, Helicase Domain
pdb|2P6N|B Chain B, Human Dead-box Rna Helicase Ddx41, Helicase Domain
Length = 191
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 654 YLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVG 713
YLLL+ + ++ K Q R + E FR K+ +LV +DV+++G+D+P + V+
Sbjct: 73 YLLLK--GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYD 130
Query: 714 IPPDREQYIH 723
+P + E Y+H
Sbjct: 131 MPEEIENYVH 140
>pdb|3PEU|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1
H337r And Ip6
pdb|3PEV|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1
And Ip6
Length = 188
Score = 49.7 bits (117), Expect = 7e-06, Method: Composition-based stats.
Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 10/109 (9%)
Query: 621 FQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRIS 680
F +L L +G+ I+F +T ++LY L+ V ++ RDR+
Sbjct: 24 FDVLTELYGVXTIGSS----IIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLI 79
Query: 681 EEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIP------PDREQYIH 723
++FR + +L+T++V ARG+D P V+ VV +P D YIH
Sbjct: 80 DDFREGRSKVLITTNVLARGIDIPTVSXVVNYDLPTLANGQADPATYIH 128
>pdb|3GFP|A Chain A, Structure Of The C-Terminal Domain Of The Dead-Box Protein
Dbp5
Length = 189
Score = 49.7 bits (117), Expect = 7e-06, Method: Composition-based stats.
Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 10/109 (9%)
Query: 621 FQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRIS 680
F +L L +G+ I+F +T ++LY L+ V ++ RDR+
Sbjct: 25 FDVLTELYGLXTIGSS----IIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLI 80
Query: 681 EEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIP------PDREQYIH 723
++FR + +L+T++V ARG+D P V+ VV +P D YIH
Sbjct: 81 DDFREGRSKVLITTNVLARGIDIPTVSXVVNYDLPTLANGQADPATYIH 129
>pdb|2JGN|A Chain A, Ddx3 Helicase Domain
pdb|2JGN|B Chain B, Ddx3 Helicase Domain
pdb|2JGN|C Chain C, Ddx3 Helicase Domain
Length = 185
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 41/87 (47%)
Query: 637 DYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDV 696
D +VF T L L ++ + Q R+ +FR+ K ILV + V
Sbjct: 46 DSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAV 105
Query: 697 SARGMDYPDVTSVVQVGIPPDREQYIH 723
+ARG+D +V V+ +P D E+Y+H
Sbjct: 106 AARGLDISNVKHVINFDLPSDIEEYVH 132
>pdb|2HJV|A Chain A, Structure Of The Second Domain (Residues 207-368) Of The
Bacillus Subtilis Yxin Protein
pdb|2HJV|B Chain B, Structure Of The Second Domain (Residues 207-368) Of The
Bacillus Subtilis Yxin Protein
Length = 163
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 58/120 (48%), Gaps = 4/120 (3%)
Query: 604 TPVKIKQSCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMN 663
T I+ + + E F +L +L + PD I+FC T + L L ++
Sbjct: 6 TTRNIEHAVIQVREENKFSLLKDVL---MTENPD-SCIIFCRTKEHVNQLTDELDDLGYP 61
Query: 664 VREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIH 723
+++ Q R + EF+ + LV +DV+ARG+D +++ V+ +P ++E Y+H
Sbjct: 62 CDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVH 121
>pdb|2RB4|A Chain A, Crystal Structure Of The Helicase Domain Of Human Ddx25
Rna Helicase
pdb|2RB4|B Chain B, Crystal Structure Of The Helicase Domain Of Human Ddx25
Rna Helicase
Length = 175
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 6/91 (6%)
Query: 639 KVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSA 698
+ I+FC T L + + + V + R I + FR K +L+T++V A
Sbjct: 36 QAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCA 95
Query: 699 RGMDYPDVTSVVQVGIP------PDREQYIH 723
RG+D VT VV +P PD E Y+H
Sbjct: 96 RGIDVKQVTIVVNFDLPVKQGEEPDYETYLH 126
>pdb|2WAX|A Chain A, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAX|C Chain C, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAY|A Chain A, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAY|C Chain C, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
Length = 193
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 42/83 (50%)
Query: 641 IVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARG 700
I+FC++ LL + ++ + ++++ Q +R+R+ +FR LV +D+ RG
Sbjct: 48 IIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRG 107
Query: 701 MDYPDVTSVVQVGIPPDREQYIH 723
+D V V+ P E Y+H
Sbjct: 108 IDIQAVNVVINFDFPKLAETYLH 130
>pdb|2YJT|D Chain D, Crystal Structure Of E. Coli Dead-Box Protein Srmb Bound
To Regulator Of Ribonuclease Activity A (Rraa)
Length = 170
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Query: 631 HILGTPD-YKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRL 689
H+L P+ + IVF L LRE +N + Q R+ + +
Sbjct: 23 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 82
Query: 690 ILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIH 723
+LV +DV+ARG+D PDV+ V +P + Y+H
Sbjct: 83 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLH 116
>pdb|4F91|B Chain B, Brr2 Helicase Region
Length = 1724
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 67/151 (44%), Gaps = 8/151 (5%)
Query: 398 GYIQMTRVQEATLSACLE-GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPI 456
G+ + R+Q A LE ++ ++ A TG GK+ L+ + + K + T V
Sbjct: 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDF 135
Query: 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPG 516
++ + P R L ++ L + GI V L G + + E QI+V TP
Sbjct: 136 KIIYIAPMRSLVQEMVGSFGKRLATY-GITVAELTGDHQLCKE----EISATQIIVCTPE 190
Query: 517 RLLDHIENKSGLSVRLMGLKMLVLDEADHLL 547
+ D I K G +++++LDE HLL
Sbjct: 191 K-WDIITRKGGERTYTQLVRLIILDEI-HLL 219
>pdb|4F92|B Chain B, Brr2 Helicase Region S1087l
pdb|4F93|B Chain B, Brr2 Helicase Region S1087l, Mg-Atp
Length = 1724
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 67/151 (44%), Gaps = 8/151 (5%)
Query: 398 GYIQMTRVQEATLSACLE-GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPI 456
G+ + R+Q A LE ++ ++ A TG GK+ L+ + + K + T V
Sbjct: 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDF 135
Query: 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPG 516
++ + P R L ++ L + GI V L G + + E QI+V TP
Sbjct: 136 KIIYIAPMRSLVQEMVGSFGKRLATY-GITVAELTGDHQLCKE----EISATQIIVCTPE 190
Query: 517 RLLDHIENKSGLSVRLMGLKMLVLDEADHLL 547
+ D I K G +++++LDE HLL
Sbjct: 191 K-WDIITRKGGERTYTQLVRLIILDEI-HLL 219
>pdb|1T5I|A Chain A, Crystal Structure Of The C-Terminal Domain Of Uap56
Length = 172
Score = 37.4 bits (85), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 39/85 (45%)
Query: 639 KVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSA 698
+V++F + L LL E ++ PQ R ++F+ +R ILV +++
Sbjct: 33 QVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFG 92
Query: 699 RGMDYPDVTSVVQVGIPPDREQYIH 723
RGMD V +P D + Y+H
Sbjct: 93 RGMDIERVNIAFNYDMPEDSDTYLH 117
>pdb|1OYW|A Chain A, Structure Of The Recq Catalytic Core
Length = 523
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 398 GYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
GY Q QE + L G+D +V TG GKS+ + +PA+
Sbjct: 22 GYQQFRPGQEEIIDTVLSGRDCLVVXPTGGGKSLCYQIPAL 62
>pdb|1OYY|A Chain A, Structure Of The Recq Catalytic Core Bound To Atp-Gamma-S
Length = 523
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 10/80 (12%)
Query: 398 GYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIY 457
GY Q QE + L G+D +V TG GKS+ + +PA+ + T +V P+
Sbjct: 22 GYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPAL------LLNGLTVVVSPLI 75
Query: 458 VLILCPTRELASQIAAEAIA 477
L+ ++ Q+ A +A
Sbjct: 76 SLM----KDQVDQLQANGVA 91
>pdb|4GL2|A Chain A, Structural Basis For Dsrna Duplex Backbone Recognition By
Mda5
pdb|4GL2|B Chain B, Structural Basis For Dsrna Duplex Backbone Recognition By
Mda5
Length = 699
Score = 33.1 bits (74), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 65/150 (43%), Gaps = 12/150 (8%)
Query: 400 IQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVL 459
+Q+ Q LEGK+ ++ TG GK+ + A + + K +S P V+
Sbjct: 6 LQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKAS-----EPGKVI 60
Query: 460 ILCPTRELASQIA-AEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRL 518
+L L Q+ E LK V+ L G T+ K+ + C I+++T L
Sbjct: 61 VLVNKVLLVEQLFRKEFQPFLKK--WYRVIGLSGDTQLKISFPEV-VKSCDIIISTAQIL 117
Query: 519 ---LDHIENKSGLSVRLMGLKMLVLDEADH 545
L ++EN V+L ++++DE H
Sbjct: 118 ENSLLNLENGEDAGVQLSDFSLIIIDECHH 147
>pdb|3B6E|A Chain A, Crystal Structure Of Human Dech-Box Rna Helicase Mda5
(Melanoma Differentiation-Associated Protein 5),
Dech-Domain
Length = 216
Score = 32.7 bits (73), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 66/150 (44%), Gaps = 12/150 (8%)
Query: 400 IQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVL 459
+Q+ Q LEGK+ ++ TG+GK+ + A + + K +S P V+
Sbjct: 32 LQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASE-----PGKVI 86
Query: 460 ILCPTRELASQIA-AEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRL 518
+L L Q+ E LK V+ L G T+ K+ + C I+++T L
Sbjct: 87 VLVNKVLLVEQLFRKEFQPFLKKW--YRVIGLSGDTQLKISFPEVVKS-CDIIISTAQIL 143
Query: 519 ---LDHIENKSGLSVRLMGLKMLVLDEADH 545
L ++EN V+L ++++DE H
Sbjct: 144 ENSLLNLENGEDAGVQLSDFSLIIIDECHH 173
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,040,167
Number of Sequences: 62578
Number of extensions: 767168
Number of successful extensions: 1891
Number of sequences better than 100.0: 77
Number of HSP's better than 100.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1615
Number of HSP's gapped (non-prelim): 86
length of query: 848
length of database: 14,973,337
effective HSP length: 107
effective length of query: 741
effective length of database: 8,277,491
effective search space: 6133620831
effective search space used: 6133620831
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)